## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[esophagus_muscularis_mucosa-ENCSR609GST-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=esophagus_muscularis_mucosa-ENCSR609GST-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=esophagus_muscularis_mucosa-ENCSR609GST-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	30766481	0	0	633335	214757	0.020585	1104767461

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.006932
2.0	1.986209
3.0	2.93859
4.0	3.864815
5.0	4.765601
6.0	5.641647
7.0	6.493633
8.0	7.32222
9.0	8.12805
10.0	8.911748
11.0	9.673922
12.0	10.415163
13.0	11.136047
14.0	11.837131
15.0	12.518961
16.0	13.182064
17.0	13.826955
18.0	14.454135
19.0	15.064089
20.0	15.657292
21.0	16.234202
22.0	16.795268
23.0	17.340924
24.0	17.871594
25.0	18.387689
26.0	18.88961
27.0	19.377745
28.0	19.852475
29.0	20.314166
30.0	20.763177
31.0	21.199856
32.0	21.624542
33.0	22.037563
34.0	22.439242
35.0	22.829888
36.0	23.209806
37.0	23.579289
38.0	23.938625
39.0	24.288091
40.0	24.62796
41.0	24.958494
42.0	25.27995
43.0	25.592578
44.0	25.896619
45.0	26.19231
46.0	26.47988
47.0	26.759552
48.0	27.031542
49.0	27.296063
50.0	27.553319
51.0	27.803509
52.0	28.046828
53.0	28.283464
54.0	28.513601
55.0	28.737418
56.0	28.955087
57.0	29.166778
58.0	29.372656
59.0	29.572878
60.0	29.767602
61.0	29.956978
62.0	30.141153
63.0	30.320269
64.0	30.494466
65.0	30.663879
66.0	30.828639
67.0	30.988874
68.0	31.144708
69.0	31.296262
70.0	31.443654
71.0	31.586997
72.0	31.726404
73.0	31.861982
74.0	31.993837
75.0	32.12207
76.0	32.246781
77.0	32.368067
78.0	32.486022
79.0	32.600737
80.0	32.712302
81.0	32.820803
82.0	32.926324
83.0	33.028947
84.0	33.128751
85.0	33.225814
86.0	33.320211
87.0	33.412016
88.0	33.501299
89.0	33.58813
90.0	33.672577
91.0	33.754704
92.0	33.834576
93.0	33.912254
94.0	33.987798
95.0	34.061268
96.0	34.13272
97.0	34.202209
98.0	34.26979
99.0	34.335515
100.0	34.399435