## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[breast_epithelium-ENCSR955JSO-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=breast_epithelium-ENCSR955JSO-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=breast_epithelium-ENCSR955JSO-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:25 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	60693687	0	0	7933608	6502146	0.130716	1007633019

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.116411
2.0	2.167561
3.0	3.157266
4.0	4.089117
5.0	4.966495
6.0	5.792586
7.0	6.570387
8.0	7.302721
9.0	7.992246
10.0	8.641465
11.0	9.252733
12.0	9.828268
13.0	10.370161
14.0	10.880376
15.0	11.360767
16.0	11.813076
17.0	12.238945
18.0	12.639919
19.0	13.017454
20.0	13.37292
21.0	13.707607
22.0	14.02273
23.0	14.319432
24.0	14.59879
25.0	14.861818
26.0	15.10947
27.0	15.342646
28.0	15.562191
29.0	15.768903
30.0	15.963531
31.0	16.146782
32.0	16.319321
33.0	16.481774
34.0	16.634731
35.0	16.778746
36.0	16.914343
37.0	17.042014
38.0	17.162221
39.0	17.275402
40.0	17.381967
41.0	17.482302
42.0	17.576772
43.0	17.66572
44.0	17.749468
45.0	17.828321
46.0	17.902564
47.0	17.972468
48.0	18.038285
49.0	18.100254
50.0	18.158602
51.0	18.213538
52.0	18.265263
53.0	18.313965
54.0	18.35982
55.0	18.402994
56.0	18.443644
57.0	18.481918
58.0	18.517955
59.0	18.551885
60.0	18.583832
61.0	18.613912
62.0	18.642233
63.0	18.668898
64.0	18.694005
65.0	18.717644
66.0	18.739901
67.0	18.760858
68.0	18.780589
69.0	18.799167
70.0	18.816658
71.0	18.833128
72.0	18.848634
73.0	18.863234
74.0	18.876981
75.0	18.889924
76.0	18.902111
77.0	18.913585
78.0	18.924388
79.0	18.93456
80.0	18.944138
81.0	18.953155
82.0	18.961645
83.0	18.969639
84.0	18.977166
85.0	18.984253
86.0	18.990925
87.0	18.997208
88.0	19.003123
89.0	19.008692
90.0	19.013936
91.0	19.018873
92.0	19.023522
93.0	19.027899
94.0	19.03202
95.0	19.0359
96.0	19.039554
97.0	19.042994
98.0	19.046232
99.0	19.049282
100.0	19.052153