## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[breast_epithelium-ENCSR654UYP-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=breast_epithelium-ENCSR654UYP-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=breast_epithelium-ENCSR654UYP-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	70521530	0	0	8795943	7430734	0.124727	1436709548

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.114914
2.0	2.176423
3.0	3.187086
4.0	4.149338
5.0	5.065497
6.0	5.937773
7.0	6.768266
8.0	7.558978
9.0	8.311815
10.0	9.028592
11.0	9.711034
12.0	10.360787
13.0	10.979417
14.0	11.568414
15.0	12.129198
16.0	12.663121
17.0	13.171468
18.0	13.655466
19.0	14.11628
20.0	14.555021
21.0	14.972746
22.0	15.370462
23.0	15.749127
24.0	16.109654
25.0	16.452912
26.0	16.779728
27.0	17.090889
28.0	17.387145
29.0	17.669211
30.0	17.937766
31.0	18.193456
32.0	18.4369
33.0	18.668682
34.0	18.889362
35.0	19.099471
36.0	19.299516
37.0	19.489978
38.0	19.671318
39.0	19.843971
40.0	20.008354
41.0	20.164863
42.0	20.313876
43.0	20.45575
44.0	20.590829
45.0	20.719438
46.0	20.841886
47.0	20.958469
48.0	21.069467
49.0	21.175149
50.0	21.275768
51.0	21.371568
52.0	21.462779
53.0	21.549621
54.0	21.632303
55.0	21.711025
56.0	21.785975
57.0	21.857336
58.0	21.925279
59.0	21.989967
60.0	22.051556
61.0	22.110196
62.0	22.166026
63.0	22.219182
64.0	22.269792
65.0	22.317978
66.0	22.363856
67.0	22.407536
68.0	22.449124
69.0	22.488719
70.0	22.526418
71.0	22.562312
72.0	22.596486
73.0	22.629023
74.0	22.660001
75.0	22.689496
76.0	22.717578
77.0	22.744315
78.0	22.769771
79.0	22.794007
80.0	22.817083
81.0	22.839054
82.0	22.859972
83.0	22.879888
84.0	22.89885
85.0	22.916903
86.0	22.934092
87.0	22.950458
88.0	22.96604
89.0	22.980875
90.0	22.995
91.0	23.008448
92.0	23.021252
93.0	23.033443
94.0	23.04505
95.0	23.0561
96.0	23.066622
97.0	23.076639
98.0	23.086177
99.0	23.095258
100.0	23.103903