## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.EstimateLibraryComplexity INPUT=[adrenal_gland-ENCSR113MBR-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam] OUTPUT=adrenal_gland-ENCSR113MBR-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.est_lib_complex_metrics.txt MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Mon Nov 25 00:19:17 PST 2019 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown 0 54290027 0 0 4808 1807 0.000089 491020029213 ## HISTOGRAM java.lang.Integer duplication_group_count Unknown 1 54281987 2 2545 3 365 4 129 5 78 6 39 7 17 8 17 9 14 10 8 11 6 12 8 13 2 14 1 15 1 16 2 17 2 24 1 37 1 62 1