## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Peyers_patch-ENCSR017RQC-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=Peyers_patch-ENCSR017RQC-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=Peyers_patch-ENCSR017RQC-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	52138193	0	0	2909324	2258975	0.0558	1896107421

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.044669
2.0	2.061004
3.0	3.049773
4.0	4.011723
5.0	4.947583
6.0	5.85806
7.0	6.743842
8.0	7.605598
9.0	8.443982
10.0	9.259626
11.0	10.053148
12.0	10.825147
13.0	11.576207
14.0	12.306896
15.0	13.017767
16.0	13.709357
17.0	14.382189
18.0	15.036772
19.0	15.6736
20.0	16.293156
21.0	16.895908
22.0	17.482312
23.0	18.052811
24.0	18.607836
25.0	19.147807
26.0	19.673133
27.0	20.18421
28.0	20.681425
29.0	21.165155
30.0	21.635764
31.0	22.093609
32.0	22.539036
33.0	22.972382
34.0	23.393974
35.0	23.804132
36.0	24.203164
37.0	24.591374
38.0	24.969055
39.0	25.336491
40.0	25.693962
41.0	26.041737
42.0	26.38008
43.0	26.709245
44.0	27.029483
45.0	27.341035
46.0	27.644137
47.0	27.939017
48.0	28.2259
49.0	28.505002
50.0	28.776533
51.0	29.0407
52.0	29.297702
53.0	29.547734
54.0	29.790983
55.0	30.027635
56.0	30.257869
57.0	30.481858
58.0	30.699771
59.0	30.911774
60.0	31.118027
61.0	31.318686
62.0	31.513903
63.0	31.703824
64.0	31.888595
65.0	32.068354
66.0	32.243237
67.0	32.413377
68.0	32.578902
69.0	32.739938
70.0	32.896606
71.0	33.049024
72.0	33.197309
73.0	33.341572
74.0	33.481922
75.0	33.618465
76.0	33.751305
77.0	33.880542
78.0	34.006273
79.0	34.128595
80.0	34.247598
81.0	34.363374
82.0	34.47601
83.0	34.58559
84.0	34.692199
85.0	34.795916
86.0	34.89682
87.0	34.994987
88.0	35.090492
89.0	35.183406
90.0	35.2738
91.0	35.361742
92.0	35.4473
93.0	35.530536
94.0	35.611515
95.0	35.690298
96.0	35.766943
97.0	35.84151
98.0	35.914055
99.0	35.984631
100.0	36.053294