Index of /kundaje/marinovg/oak/papers/2019_NComm_CTCF-screen/2017-10-06-CRISPR-RNA-seq-repeats

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]2017-07-14-13004-rep1-S1-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13004-rep2-S2-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13006-rep1-S3-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13006-rep2-S4-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13189-rep1-JT_CTCFvalidationRNAseq_170303_S9-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13189-rep2-JT_CTCFvalidationRNAseq_170303_S10-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13190-rep1-JT_CTCFvalidationRNAseq_170303_S11-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-13190-rep2-JT_CTCFvalidationRNAseq_170303_S12-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-15171-rep1-JT_CTCFvalidationRNAseq_170303_S5-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-15171-rep2-JT_CTCFvalidationRNAseq_170303_S6-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-15173-rep1-JT_CTCFvalidationRNAseq_170303_S7-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-15173-rep2-JT_CTCFvalidationRNAseq_170303_S8-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-N4293-rep1-JT_CTCFvalidationRNAseq_170303_S1-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-N4293-rep1-S5-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-08 01:04 -  
[DIR]2017-07-14-N4293-rep2-JT_CTCFvalidationRNAseq_170303_S2-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-N4371-rep1-JT_CTCFvalidationRNAseq_170303_S3-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-N4371-rep1-S7-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-N4371-rep2-JT_CTCFvalidationRNAseq_170303_S4-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-07-14-N4371-rep2-S8-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-12040-GH549_1_CTCFvalidationRNAseq_170812_S1-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-12040-GH549_2_CTCFvalidationRNAseq_170812_S2-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-12042-GH550_1_CTCFvalidationRNAseq_170812_S3-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-12042-GH550_2_CTCFvalidationRNAseq_170812_S4-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-13004_1_CTCFvalidationRNAseq_170812_S9-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-13004_2_CTCFvalidationRNAseq_170812_S10-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-13006_1_CTCFvalidationRNAseq_170812_S11-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-13006_2_CTCFvalidationRNAseq_170812_S12-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-14376-GH551_1_CTCFvalidationRNAseq_170812_S5-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-14376-GH551_2_CTCFvalidationRNAseq_170812_S6-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-14377-GH552_1_CTCFvalidationRNAseq_170812_S7-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-14377-GH552_2_CTCFvalidationRNAseq_170812_S8-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-N4293_1_CTCFvalidationRNAseq_170812_S13-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-N4293_2_CTCFvalidationRNAseq_170812_S14-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-N4871_1_CTCFvalidationRNAseq_170812_S15-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]2017-08-14-N4871_2_CTCFvalidationRNAseq_170812_S16-2x50mers-STAR2.5.3a-GENCODEV19-outFilterMultimapNmax_1e9/2017-10-10 16:56 -  
[DIR]DESeq2-STAR/2017-10-09 05:52 -  
[DIR]DESeq2-eXpress/2017-10-10 16:56 -  
[TXT]STAR.sh2017-10-07 18:08 35K 
[TXT]bedRPKMfromBAM.sh2017-10-08 01:33 16K 
[TXT]bedRawReadCountsBAM.sh2017-10-09 02:05 14K 
[DIR]clustering/2017-10-10 15:06 -  
[TXT]eXpress-humrep-SE.sh2017-10-08 01:12 15K 
[TXT]eXpress-humrep.sh2017-10-08 00:23 15K 
[ ]eXpress.condor2017-10-09 01:28 16K 
[DIR]express-1.5.1-2017-07-14-13004-rep1-S1-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:10 -  
[DIR]express-1.5.1-2017-07-14-13004-rep2-S2-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:10 -  
[DIR]express-1.5.1-2017-07-14-13006-rep1-S3-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:10 -  
[DIR]express-1.5.1-2017-07-14-13006-rep2-S4-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-13189-rep1-JT_CTCFvalidationRNAseq_170303_S9-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-13189-rep2-JT_CTCFvalidationRNAseq_170303_S10-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-13190-rep1-JT_CTCFvalidationRNAseq_170303_S11-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-13190-rep2-JT_CTCFvalidationRNAseq_170303_S12-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-15171-rep1-JT_CTCFvalidationRNAseq_170303_S5-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-15171-rep2-JT_CTCFvalidationRNAseq_170303_S6-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-15173-rep1-JT_CTCFvalidationRNAseq_170303_S7-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-15173-rep2-JT_CTCFvalidationRNAseq_170303_S8-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-N4293-rep1-JT_CTCFvalidationRNAseq_170303_S1-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:11 -  
[DIR]express-1.5.1-2017-07-14-N4293-rep1-S5-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-07-14-N4293-rep2-JT_CTCFvalidationRNAseq_170303_S2-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-07-14-N4371-rep1-JT_CTCFvalidationRNAseq_170303_S3-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-07-14-N4371-rep1-S7-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-07-14-N4371-rep2-JT_CTCFvalidationRNAseq_170303_S4-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-07-14-N4371-rep2-S8-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-08-14-12040-GH549_1_CTCFvalidationRNAseq_170812_S1-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-08-14-12040-GH549_2_CTCFvalidationRNAseq_170812_S2-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-08-14-12042-GH550_1_CTCFvalidationRNAseq_170812_S3-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:09 -  
[DIR]express-1.5.1-2017-08-14-12042-GH550_2_CTCFvalidationRNAseq_170812_S4-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:09 -  
[DIR]express-1.5.1-2017-08-14-13004_1_CTCFvalidationRNAseq_170812_S9-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-08-14-13004_2_CTCFvalidationRNAseq_170812_S10-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:12 -  
[DIR]express-1.5.1-2017-08-14-13006_1_CTCFvalidationRNAseq_170812_S11-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[DIR]express-1.5.1-2017-08-14-13006_2_CTCFvalidationRNAseq_170812_S12-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[DIR]express-1.5.1-2017-08-14-14376-GH551_1_CTCFvalidationRNAseq_170812_S5-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[DIR]express-1.5.1-2017-08-14-14376-GH551_2_CTCFvalidationRNAseq_170812_S6-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:10 -  
[DIR]express-1.5.1-2017-08-14-14377-GH552_1_CTCFvalidationRNAseq_170812_S7-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[DIR]express-1.5.1-2017-08-14-14377-GH552_2_CTCFvalidationRNAseq_170812_S8-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[DIR]express-1.5.1-2017-08-14-N4293_1_CTCFvalidationRNAseq_170812_S13-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
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[DIR]express-1.5.1-2017-08-14-N4871_1_CTCFvalidationRNAseq_170812_S15-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[DIR]express-1.5.1-2017-08-14-N4871_2_CTCFvalidationRNAseq_170812_S16-2x50mers.GENCODEV25+humrep_RepBase16.03/2017-10-10 14:13 -  
[ ]express-1.5.1.GENCODEV25+humrep_RepBase16.TPM.files2017-10-10 14:16 4.8K 
[ ]express-1.5.1.GENCODEV25+humrep_RepBase16.TPM.humrep.log2FPKM+1.table2017-10-10 15:01 274K 
[ ]express-1.5.1.GENCODEV25+humrep_RepBase16.TPM.humrep.normalizedToMean.table2017-10-10 15:01 291K 
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[TXT]gzip.sh2017-10-07 11:41 5.0K 
[ ]map-eXpress-SE.condor2017-10-09 01:31 24K 
[TXT]map-eXpress-humrep-SE.sh2017-10-08 01:11 25K 
[TXT]map-eXpress-humrep.sh2017-10-08 00:09 28K 
[ ]map-eXpress.condor2017-10-09 01:28 27K 
[ ]repeatMasker.RPKM.class.log2FPKM+1.table2017-10-09 04:28 35  
[ ]repeatMasker.RPKM.class.normalizedToMean.table2017-10-08 06:15 30K 
[ ]repeatMasker.RPKM.class.table2017-10-08 06:11 27K 
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[ ]repeatMasker.RPKM.repeat.log2FPKM+1.table2017-10-08 06:14 551K 
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[ ]repeatMasker.RPKM.repeat.table2017-10-08 06:07 551K 
[ ]repeatMasker.RPKM.table.bz22017-10-08 05:56 160M 
[ ]repeatMasker.rawCounts.class.table2017-10-09 04:14 21K 
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[ ]repeatMasker.rawCounts.repeat.table2017-10-09 04:10 358K 
[ ]repeatMasker.rawCounts.table.bz22017-10-09 03:58 138M 
[TXT]samtools-index.sh2017-10-08 01:05 7.6K 
[TXT]trim-paired.sh2017-10-07 11:39 60K 
[ ]z2017-10-10 16:56 34  
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