Index of /kundaje/marinovg/oak/papers/2018-ENCODE-enhancers/tex_files

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[PARENTDIR]Parent Directory  -  
[ ]2016-09-07-Thesis - Anthony Kirilusha - 2014.pdf2021-01-31 06:50 1.9M 
[TXT]2016-09-09-Superenhancers.txt2021-01-31 06:49 516  
[DIR]2017-08-28-Figs/2021-01-31 06:49 -  
[DIR]2017-08-31-Figs/2021-01-31 06:50 -  
[DIR]2017-09-08-Gigio-V7edit/2021-01-31 06:50 -  
[ ]2017-ENCODE-enhancer_Figures.pdf2021-01-31 06:50 69M 
[TXT]2017-ENCODE-enhancer_V1.tex2021-01-31 06:50 25K 
[TXT]2017-ENCODE-enhancer_V2.tex2021-01-31 06:49 25K 
[TXT]2017-ENCODE-enhancer_V3-eLife.tex2021-01-31 06:50 31K 
[TXT]2017-ENCODE-enhancer_V4-eLife.tex2021-01-31 06:50 38K 
[TXT]2017-ENCODE-enhancer_V5-eLife.tex2021-01-31 06:50 49K 
[TXT]2017-ENCODE-enhancer_V6-eLife.tex2021-01-31 06:50 49K 
[TXT]2017-ENCODE-enhancer_V7.tex2021-01-31 06:50 71K 
[TXT]2017-ENCODE-enhancer_V8.tex2021-01-31 06:50 73K 
[ ]2017-ENCODE-enhancer_V9.pdf2021-01-31 06:49 70M 
[TXT]2017-ENCODE-enhancer_V9.tex2021-01-31 06:50 86K 
[TXT]2017-ENCODE-enhancer_V10.tex2021-01-31 06:50 92K 
[ ]Fig1-cartoon-V2.ai2021-01-31 06:49 398K 
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[ ]Fig1-cartoon-V3.ai2021-01-31 06:49 376K 
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[ ]Fig1-cartoon-V3.pptx2021-01-31 06:50 71K 
[ ]Fig1-cartoon.ai2021-01-31 06:50 391K 
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[ ]Fig1-cartoon.pptx2021-01-31 06:50 70K 
[ ]Fig1V2.ai2021-01-31 06:50 10M 
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[ ]Fig2-DNAse-H3K27ac.ai2021-01-31 06:49 3.2M 
[IMG]Fig2-DNAse-H3K27ac.png2021-01-31 06:50 771K 
[ ]Fig3-TAL1-GATA-heatmaps.ai2021-01-31 06:50 28M 
[IMG]Fig3-TAL1-GATA-heatmaps.png2021-01-31 06:50 7.9M 
[IMG]Fig3.png2021-01-31 06:50 279K 
[ ]Fig3Final.ai2021-01-31 06:50 418K 
[ ]Fig4.ai2021-01-31 06:50 301K 
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[ ]Fig6-G1E-funcassay.ai2021-01-31 06:50 1.1M 
[IMG]Fig6-G1E-funcassay.png2021-01-31 06:49 532K 
[ ]Fig7-predictivity-V2.ai2021-01-31 06:49 474K 
[IMG]Fig7-predictivity-V2.png2021-01-31 06:49 94K 
[ ]Fig7-predictivity-V3.ai2021-01-31 06:49 702K 
[IMG]Fig7-predictivity-V3.png2021-01-31 06:49 226K 
[ ]Fig7-predictivity.ai2021-01-31 06:49 387K 
[IMG]Fig7-predictivity.png2021-01-31 06:50 122K 
[ ]FigS1-region-CNE-length.ai2021-01-31 06:50 465K 
[IMG]FigS1-region-CNE-length.png2021-01-31 06:50 570K 
[ ]FigS1-region-CNE-length.xlsx2021-01-31 06:49 12K 
[ ]FigS1-region-CNE-length.zip2021-01-31 06:50 85K 
[ ]FigS2-G1E-activity-vs-RPM-conservation.ai2021-01-31 06:49 422K 
[IMG]FigS2-G1E-activity-vs-RPM-conservation.png2021-01-31 06:49 240K 
[ ]FigS2-G1E-activity-vs-RPM-conservation.zip2021-01-31 06:49 55K 
[ ]FigS3-G1E-activity-vs-RPM-TF-binding.ai2021-01-31 06:50 491K 
[IMG]FigS3-G1E-activity-vs-RPM-TF-binding.png2021-01-31 06:49 409K 
[ ]FigS3-G1E-activity-vs-RPM-TF-binding.zip2021-01-31 06:50 70K 
[ ]datasets_stats_ChIP.xls2021-01-31 06:50 134K 
[ ]datasets_stats_RNA.xls2021-01-31 06:50 50K 
[ ]debug.log2021-01-31 06:49 304  
[ ]eLifeFig1-cartoon-V2.ai2021-01-31 06:50 439K 
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[ ]eLifeFig1-cartoon-V2.pptx2021-01-31 06:50 46K 
[ ]eLifeFig1-cartoon-V3.ai2021-01-31 06:50 427K 
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[ ]eLifeFig1-cartoon.ai2021-01-31 06:50 377K 
[IMG]eLifeFig1-cartoon.png2021-01-31 06:49 405K 
[ ]eLifeFig2-C2C12-DNAse-H3K27ac-overlaps.xlsx2021-01-31 06:49 13K 
[ ]eLifeFig2-C2C12-DNAse-H3K27ac.ai2021-01-31 06:50 7.3M 
[IMG]eLifeFig2-C2C12-DNAse-H3K27ac.png2021-01-31 06:49 1.6M 
[ ]eLifeFig3-C2C12-funcassay-V2.zip2021-01-31 06:49 56K 
[ ]eLifeFig3a-C2C12-funcassay-locus-V2.ai2021-01-31 06:49 1.1M 
[IMG]eLifeFig3a-C2C12-funcassay-locus-V2.png2021-01-31 06:50 331K 
[ ]eLifeFig3a-C2C12-funcassay-locus.ai2021-01-31 06:50 1.1M 
[ ]eLifeFig3a-C2C12-funcassay.zip2021-01-31 06:49 62K 
[ ]eLifeFig3b-C2C12-funcassay-random-V2.ai2021-01-31 06:49 1.2M 
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[ ]eLifeFig3b-C2C12-funcassay-random.ai2021-01-31 06:49 1.2M 
[ ]eLifeFig4-C2C12-plots-AUROC-corr-V2.xlsx2021-01-31 06:50 11K 
[ ]eLifeFig4-C2C12-plots-AUROC-corr.xlsx2021-01-31 06:49 11K 
[ ]eLifeFig4-C2C12-plots-V2.zip2021-01-31 06:49 45K 
[ ]eLifeFig4-C2C12-plots.zip2021-01-31 06:49 55K 
[ ]eLifeFig4-C2C12-predictivity-V2.ai2021-01-31 06:49 1.6M 
[IMG]eLifeFig4-C2C12-predictivity-V2.png2021-01-31 06:49 688K 
[ ]eLifeFig4-C2C12-predictivity.ai2021-01-31 06:50 1.7M 
[ ]eLifeFig5-G1E-DNAse-H3K27ac-overlaps.xlsx2021-01-31 06:49 13K 
[ ]eLifeFig5-G1E-DNAse-H3K27ac.ai2021-01-31 06:50 6.1M 
[IMG]eLifeFig5-G1E-DNAse-H3K27ac.png2021-01-31 06:50 1.6M 
[ ]eLifeFig6-G1E-funcassay.ai2021-01-31 06:50 1.1M 
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[ ]eLifeFig7-G1E-plots-AUROC-corr.xlsx2021-01-31 06:49 11K 
[ ]eLifeFig7-G1E-plots.zip2021-01-31 06:50 26K 
[ ]eLifeFig7-G1E-predictivity.ai2021-01-31 06:49 968K 
[IMG]eLifeFig7-G1E-predictivity.png2021-01-31 06:49 472K 
[ ]eLifeFig8-K562_HepG2-DNAse-H3K27ac.ai2021-01-31 06:50 5.7M 
[IMG]eLifeFig8-K562_HepG2-DNAse-H3K27ac.png2021-01-31 06:49 1.5M 
[ ]eLifeFig8-K562_HepG2-DNAse-H3K27ac.pptx2021-01-31 06:50 97K 
[ ]eLifeFig9-2017-01-18-HEPG2_Data.xlsx2021-01-31 06:50 27K 
[ ]eLifeFig9-2017-01-18-K562_Data_for_Georgi.xlsx2021-01-31 06:49 51K 
[ ]eLifeFig9-K562_HepG2-funcassay.ai2021-01-31 06:49 598K 
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[ ]eLifeFig9-K562_HepG2-funcassay.zip2021-01-31 06:50 16K 
[ ]eLifeFig10-K562-HepG2-A549-plots-AUROC-corr.xlsx2021-01-31 06:49 12K 
[ ]eLifeFig10-K562-HepG2-A549-plots-AUROC-corr_old_data_only.xlsx2021-01-31 06:50 12K 
[ ]eLifeFig10-K562-HepG2-A549-plots.ai2021-01-31 06:50 1.0M 
[IMG]eLifeFig10-K562-HepG2-A549-plots.png2021-01-31 06:49 548K 
[ ]eLifeFig10-K562-HepG2-A549-plots.zip2021-01-31 06:49 52K 
[ ]eLifeFig10-K562-HepG2-A549-plots_old_data_only.zip2021-01-31 06:50 31K 
[ ]eLifeFig11-predictivity-V2.ai2021-01-31 06:49 793K 
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[ ]eLifeFig11-predictivity-V2.zip2021-01-31 06:49 113K 
[ ]eLifeFig11-predictivity.ai2021-01-31 06:50 793K 
[IMG]eLifeFig11-predictivity.png2021-01-31 06:49 296K 
[ ]eLifeFig11-predictivity.xlsx2021-01-31 06:50 34K 
[ ]eLifeFig11-predictivity.zip2021-01-31 06:49 113K 
[ ]eLifeFig12-predictivity-vs-signal.ai2021-01-31 06:49 738K 
[IMG]eLifeFig12-predictivity-vs-signal.png2021-01-31 06:50 361K 
[ ]eLifeFig12-predictivity-vs-signal.xlsx2021-01-31 06:49 12K 
[ ]eLifeFig12-predictivity-vs-signal.zip2021-01-31 06:50 50K 
[ ]eLifeFigApp1-CNE-length.ai2021-01-31 06:49 432K 
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[ ]eLifeFigApp2-contruct-length.ai2021-01-31 06:50 380K 
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[ ]eLifeFigApp3a-C2C12-heatmaps-MyoD-V2.ai2021-01-31 06:50 12M 
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[ ]eLifeFigApp3b-C2C12-heatmaps-myogenin-only-V2.ai2021-01-31 06:49 9.5M 
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[ ]eLifeFigApp3c-C2C12-heatmaps-MEF2-only-V2.ai2021-01-31 06:50 8.3M 
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[IMG]eLifeFigApp3c-C2C12-heatmaps-MEF2-only.png2021-01-31 06:49 10M 
[ ]eLifeFigApp4c-C2C12-funcassay-negative-controls-V2.ai2021-01-31 06:50 629K 
[IMG]eLifeFigApp4c-C2C12-funcassay-negative-controls-V2.png2021-01-31 06:49 265K 
[ ]eLifeFigApp4c-C2C12-funcassay-negative-controls.ai2021-01-31 06:49 646K 
[ ]eLifeFigApp5-G1E-TAL1-GATA-heatmaps-V2.ai2021-01-31 06:49 72M 
[IMG]eLifeFigApp5-G1E-TAL1-GATA-heatmaps-V2.png2021-01-31 06:49 14M 
[ ]eLifeFigApp5-G1E-TAL1-GATA-heatmaps.ai2021-01-31 06:50 28M 
[IMG]eLifeFigApp5-G1E-TAL1-GATA-heatmaps.png2021-01-31 06:50 7.9M 
[ ]eLifeFigApp6-A549-heatmaps-V2.ai2021-01-31 06:50 17M 
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[ ]eLifeFigApp6-A549-heatmaps.ai2021-01-31 06:50 6.5M 
[IMG]eLifeFigApp6-A549-heatmaps.png2021-01-31 06:49 7.7M 
[ ]eLifeFigApp7-C2C12-G1E-HepG2-K562-overlaps.ai2021-01-31 06:50 474K 
[IMG]eLifeFigApp7-C2C12-G1E-HepG2-K562-overlaps.png2021-01-31 06:49 355K 
[ ]eLifeFigApp7-C2C12-G1E-HepG2-K562-overlaps.xlsx2021-01-31 06:50 17K 
[ ]eLifeFigApp8-A549-STARR-seq-activity-peaks.xlsx2021-01-31 06:50 23K 
[ ]eLifeFigApp8-A549-STARR-seq-activity.ai2021-01-31 06:49 732K 
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[ ]eLifeFigApp8-A549-STARR-seq-activity.zip2021-01-31 06:50 9.4K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-Dex-V2.xlsx2021-01-31 06:49 279K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-Dex.xlsx2021-01-31 06:50 285K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-EtOH-V2.xlsx2021-01-31 06:50 166K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-EtOH.xlsx2021-01-31 06:49 171K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-TSS.zip2021-01-31 06:50 12K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-V2.ai2021-01-31 06:50 744K 
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[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-V2.zip2021-01-31 06:50 158K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus-prelim-plots.pdf2021-01-31 06:50 258K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus.ai2021-01-31 06:50 744K 
[ ]eLifeFigApp9-A549-STARR-seq-plus-minus.heatmap.xlsx2021-01-31 06:49 10K 
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[ ]eLifeFigApp9-A549-STARR-seq-plus-minus.zip2021-01-31 06:50 157K 
[TXT]references.tex2021-01-31 06:49 26K 
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