Index of /kundaje/marinovg/oak/papers/2018-ENCODE-enhancers/2017-01-20-STARR-seq
Name
Last modified
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Description
Parent Directory
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ChIP-reporter_input_pool1-GSM2095198.2x25mers.unique.bam
2021-01-31 06:55
0
ChIP-reporter_input_pool1-GSM2095198.2x25mers.unique.bam.bai
2021-01-31 06:55
0
ChIP-reporter_input_pool2-GSM2095199.2x25mers.unique.bam
2021-01-31 06:55
0
ChIP-reporter_input_pool2-GSM2095199.2x25mers.unique.bam.bai
2021-01-31 06:55
0
ChIP-reporter_input_pool3-GSM2095200.2x25mers.unique.bam
2021-01-31 06:55
0
ChIP-reporter_input_pool3-GSM2095200.2x25mers.unique.bam.bai
2021-01-31 06:55
0
ChIP-reporter_input_pool4-GSM2095201.2x25mers.unique.bam
2021-01-31 06:55
0
ChIP-reporter_input_pool4-GSM2095201.2x25mers.unique.bam.bai
2021-01-31 06:55
0
DESeq-regions/
2017-04-17 02:29
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DESeq/
2017-04-17 22:15
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DESeq2-regions-200bp.ReadPass.ChIP-RPM.sfr.0h-3h.lfc-only.table
2017-09-04 04:24
400K
DESeq2-regions-200bp.ReadPass.ChIP-RPM.sfr.0h-3h.peak-calls-only.table
2017-09-04 04:27
293K
DESeq2-regions-200bp.ReadPass.ChIP-RPM.sfr.0h-3h.table
2017-09-04 04:22
498K
DESeq2-regions-200bp.ReadPass.ChIP-RPM.sfr.table
2017-09-04 04:21
1.0M
DESeq2-regions-200bp.ReadPass.ChIP-RPM.table
2017-09-04 04:19
1.0M
DESeq2-regions-200bp.active.ChIP-RPM.files
2017-09-04 04:33
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DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.lfc-only.mat-cdt
2017-09-04 05:11
118K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.lfc-only.table
2017-09-04 05:47
66K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.mat-cdt
2017-09-04 05:53
106K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table
2017-09-04 05:52
53K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table.Dex-only
2017-09-04 05:58
23K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table.Dex-only-multi-hist
2017-09-04 05:59
127
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table.EtOH-only
2017-09-04 05:58
2.0K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table.EtOH-only-multi-hist
2017-09-04 05:59
114
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table.common
2017-09-04 05:58
28K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.peak-calls-only.table.common-multi-hist
2017-09-04 05:59
126
DESeq2-regions-200bp.active.ChIP-RPM.sfr.0h-3h.table
2017-09-04 04:35
84K
DESeq2-regions-200bp.active.ChIP-RPM.sfr.table
2017-09-04 04:34
188K
DESeq2-regions-200bp.active.ChIP-RPM.table
2017-09-04 04:33
188K
DESeq2-regions-200bp.active.files
2017-09-04 04:32
448
DESeq2-regions-200bp.active.table
2017-09-04 04:32
66K
DESeq2-regions-200bp/
2017-09-03 19:42
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DESeq2-regions/
2017-04-17 21:21
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DEX1_GR_chip_seq_library_STARRseq-GSM2095202.2x25mers.unique.bam
2021-01-31 06:55
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DEX1_GR_chip_seq_library_STARRseq-GSM2095202.2x25mers.unique.bam.bai
2021-01-31 06:55
0
DEX2_GR_chip_seq_library_STARRseq-GSM2095203.2x25mers.unique.bam
2021-01-31 06:55
0
DEX2_GR_chip_seq_library_STARRseq-GSM2095203.2x25mers.unique.bam.bai
2021-01-31 06:55
0
DEX3_GR_chip_seq_library_STARRseq-GSM2095204.2x25mers.unique.bam
2021-01-31 06:55
0
DEX3_GR_chip_seq_library_STARRseq-GSM2095204.2x25mers.unique.bam.bai
2021-01-31 06:55
0
Dex-PM_log2ratio_0-1
2017-02-14 07:57
142K
Dex-PM_log2ratio_0-1-vs-CTCF-intersection1
2017-02-14 08:21
12K
Dex-PM_log2ratio_0-1-vs-CTCF-outersection1
2017-02-14 08:21
129K
Dex-PM_log2ratio_0-1.TSS-dist-hist
2017-02-14 08:04
129
Dex-PM_log2ratio_1-2
2017-02-14 07:56
131K
Dex-PM_log2ratio_1-2-vs-CTCF-intersection1
2017-02-14 08:21
7.9K
Dex-PM_log2ratio_1-2-vs-CTCF-outersection1
2017-02-14 08:21
122K
Dex-PM_log2ratio_1-2.TSS-dist-hist
2017-02-14 08:04
130
Dex-PM_log2ratio_geq_2
2017-02-14 07:56
86K
Dex-PM_log2ratio_geq_2-vs-CTCF-intersection1
2017-02-14 08:21
5.8K
Dex-PM_log2ratio_geq_2-vs-CTCF-outersection1
2017-02-14 08:21
79K
Dex-PM_log2ratio_geq_2.TSS-dist-hist
2017-02-14 08:04
129
ETOH1_GR_chip_seq_library_STARRseq-GSM2095205.2x25mers.unique.bam
2021-01-31 06:55
0
ETOH1_GR_chip_seq_library_STARRseq-GSM2095205.2x25mers.unique.bam.bai
2021-01-31 06:55
0
ETOH2_GR_chip_seq_library_STARRseq-GSM2095206.2x25mers.unique.bam
2021-01-31 06:55
0
ETOH2_GR_chip_seq_library_STARRseq-GSM2095206.2x25mers.unique.bam.bai
2021-01-31 06:55
0
ETOH3_GR_chip_seq_library_STARRseq-GSM2095207.2x25mers.unique.bam
2021-01-31 06:55
0
ETOH3_GR_chip_seq_library_STARRseq-GSM2095207.2x25mers.unique.bam.bai
2021-01-31 06:55
0
EtOH-PM_log2ratio_0-1
2017-02-14 08:00
38K
EtOH-PM_log2ratio_0-1-vs-CTCF-intersection1
2017-02-14 08:21
4.3K
EtOH-PM_log2ratio_0-1-vs-CTCF-outersection1
2017-02-14 08:21
32K
EtOH-PM_log2ratio_0-1.TSS-dist-hist
2017-02-14 08:04
127
EtOH-PM_log2ratio_1-2
2017-02-14 08:00
66K
EtOH-PM_log2ratio_1-2-vs-CTCF-intersection1
2017-02-14 08:21
9.0K
EtOH-PM_log2ratio_1-2-vs-CTCF-outersection1
2017-02-14 08:21
56K
EtOH-PM_log2ratio_1-2.TSS-dist-hist
2017-02-14 08:04
129
EtOH-PM_log2ratio_geq_2
2017-02-14 07:59
71K
EtOH-PM_log2ratio_geq_2-vs-CTCF-intersection1
2017-02-14 08:21
4.7K
EtOH-PM_log2ratio_geq_2-vs-CTCF-outersection1
2017-02-14 08:21
65K
EtOH-PM_log2ratio_geq_2.TSS-dist-hist
2017-02-14 08:04
128
GR-IDR_0.05.ChIP-reporter_input_pool1-GSM2095198.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool1-GSM2095198.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool2-GSM2095199.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool2-GSM2095199.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool3-GSM2095200.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool3-GSM2095200.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool4-GSM2095201.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.ChIP-reporter_input_pool4-GSM2095201.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:49
1.3M
GR-IDR_0.05.DEX1_GR_chip_seq_library_STARRseq-GSM2095202.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:50
1.3M
GR-IDR_0.05.DEX1_GR_chip_seq_library_STARRseq-GSM2095202.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:50
1.3M
GR-IDR_0.05.DEX2_GR_chip_seq_library_STARRseq-GSM2095203.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:52
1.4M
GR-IDR_0.05.DEX2_GR_chip_seq_library_STARRseq-GSM2095203.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:50
1.4M
GR-IDR_0.05.DEX3_GR_chip_seq_library_STARRseq-GSM2095204.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:50
1.4M
GR-IDR_0.05.DEX3_GR_chip_seq_library_STARRseq-GSM2095204.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:50
1.4M
GR-IDR_0.05.ETOH1_GR_chip_seq_library_STARRseq-GSM2095205.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:51
1.4M
GR-IDR_0.05.ETOH1_GR_chip_seq_library_STARRseq-GSM2095205.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:51
1.4M
GR-IDR_0.05.ETOH2_GR_chip_seq_library_STARRseq-GSM2095206.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:51
1.4M
GR-IDR_0.05.ETOH2_GR_chip_seq_library_STARRseq-GSM2095206.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:51
1.4M
GR-IDR_0.05.ETOH3_GR_chip_seq_library_STARRseq-GSM2095207.2x25mers.unique.minus.end1only.RPM
2017-02-14 06:51
1.4M
GR-IDR_0.05.ETOH3_GR_chip_seq_library_STARRseq-GSM2095207.2x25mers.unique.plus.end1only.RPM
2017-02-14 06:51
1.4M
GR-IDR_0.05.plus-minus.RPM.files
2017-02-14 06:49
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GR-IDR_0.05.plus-minus.RPM.renamed.min2RPM-subtable
2017-02-14 07:47
1.2M
GR-IDR_0.05.plus-minus.RPM.renamed.min2RPM-subtable.gencode.v25.nearestTSS
2017-02-14 07:50
1.3M
GR-IDR_0.05.plus-minus.RPM.table
2017-02-14 06:53
4.3M
IDR-0.05-A549-GR.200bp-radius.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up.pv0.05.overlap.files
2017-04-21 02:18
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IDR-0.05-A549-GR.200bp-radius.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up.pv0.05.overlap.table
2017-04-21 02:18
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IDR-0.05-A549-GR.200bp-radius.combined_end1_50K.SFR.readCounts.table
2017-04-20 23:25
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IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.final_results
2017-06-06 15:41
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IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.final_results.bed
2017-08-29 22:30
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IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up
2017-06-06 20:21
180K
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up.pv0.05
2017-04-21 02:11
21K
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up.pv0.05.bed
2017-04-21 02:13
21K
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.first_pass_params
2017-06-06 14:39
3.1M
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.final_results
2017-06-06 16:43
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IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.final_results.bed
2017-08-29 22:31
1.8M
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up
2017-06-06 20:21
103K
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up.pv0.05
2017-04-21 02:11
16K
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.final_results.p-adj-0.05-up.pv0.05.bed
2017-04-21 02:16
16K
IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.first_pass_params
2017-06-06 15:43
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IDR-0.05-A549-GR.200bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.table
2017-04-19 21:00
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IDR-0.05-A549-GR.200bp-radius.complement-50K_chunks.SFR.end1.readCounts.files
2017-04-19 20:58
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IDR-0.05-A549-GR.200bp-radius.complement-50K_chunks.SFR.end1.readCounts.table
2017-04-19 23:42
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IDR-0.05-A549-GR.200bp-radius.complement.SFR.end1.minus.readCounts.files
2017-04-19 20:57
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IDR-0.05-A549-GR.200bp-radius.complement.SFR.end1.minus.readCounts.table
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IDR-0.05-A549-GR.200bp-radius.complement.SFR.end1.plus.readCounts.files
2017-04-19 20:57
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IDR-0.05-A549-GR.200bp-radius.complement.SFR.end1.plus.readCounts.table
2017-04-19 20:59
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IDR-0.05-A549-GR.200bp-radius.complement.SFR.end1.readCounts.files
2017-04-19 23:37
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IDR-0.05-A549-GR.200bp-radius.complement.SFR.end1.readCounts.table
2017-04-19 23:46
1.1M
IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.Dex.STARRseq-strand-lds.final_results
2017-06-06 14:27
1.9M
IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.Dex.STARRseq-strand-lds.final_results.p-adj-0.05-up
2017-06-06 20:22
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.Dex.STARRseq-strand-lds.first_pass_params
2017-06-06 12:09
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.Dex.STARRseq-strand-mmr.final_results
2017-06-06 12:37
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.Dex.STARRseq-strand-mmr.final_results.p-adj-0.05-up
2017-06-06 20:22
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.Dex.STARRseq-strand-mmr.first_pass_params
2017-06-06 10:52
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.EtOH.STARRseq-strand-lds.final_results
2017-06-06 14:23
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.EtOH.STARRseq-strand-lds.final_results.p-adj-0.05-up
2017-06-06 20:22
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2017-06-06 12:09
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2017-06-06 13:55
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2017-06-06 20:22
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IDR-0.05-A549-GR.200bp.combined_end1_plus_minus_50K.EtOH.STARRseq-strand-mmr.first_pass_params
2017-06-06 12:09
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IDR-0.05-A549-GR.500bp-radius.SFR.readCounts.files
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IDR-0.05-A549-GR.500bp-radius.combined.SFR.readCounts.table
2017-04-17 02:08
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IDR-0.05-A549-GR.500bp-radius.combined_10K.SFR.readCounts.table
2017-04-17 02:08
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IDR-0.05-A549-GR.500bp-radius.combined_20K.SFR.readCounts.table
2017-04-17 02:08
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2017-04-17 02:08
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IDR-0.05-A549-GR.500bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.Dex.STARRseq-strand-analysis-regions.final_results
2017-06-06 17:50
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2017-06-06 16:45
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IDR-0.05-A549-GR.500bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.final_results
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IDR-0.05-A549-GR.500bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.EtOH.STARRseq-strand-analysis-regions.first_pass_params
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IDR-0.05-A549-GR.500bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.STARRseq-strand-analysis-regions.first_pass_params
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IDR-0.05-A549-GR.500bp-radius.combined_end1_plus_minus_50K.SFR.readCounts.table
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2017-04-17 02:02
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2017-04-17 02:03
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IDR-0.05-A549-GR.500bp-radius.complement-50K_chunks.SFR.end1.readCounts.files
2017-04-17 21:04
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IDR-0.05-A549-GR.500bp-radius.complement-50K_chunks.SFR.end1.readCounts.table
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IDR-0.05-A549-GR.500bp-radius.complement.readCounts.table
2017-04-17 01:00
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2017-04-17 01:00
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2017-04-17 01:10
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IDR-0.05-A549-GR.500bp-radius.readCounts.table
2017-04-17 01:00
1.1M
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2017-08-29 23:05
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NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.Dex.STARRseq-strand-analysis-regions
2017-08-29 22:35
3.0M
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2017-06-22 19:11
32K
NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.Dex.STARRseq-strand-analysis-regions.p-adj-0.05-up.pv0.05-hist
2017-04-21 02:32
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9.9K
NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.Dex.STARRseq-strand-analysis-regions.p-adj-0.05-up.pv0.05.peak_calls.table
2017-06-23 08:07
46K
NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.Dex.STARRseq-strand-analysis-regions.peak_calls.files
2017-08-29 22:52
8.6K
NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.Dex.STARRseq-strand-analysis-regions.peak_calls.table
2017-08-29 22:55
4.4M
NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.EtOH.STARRseq-strand-analysis-regions
2017-08-29 22:35
3.0M
NearestTSS-gencode.v25-IDR-0.05-A549-GR.200bp-radius.EtOH.STARRseq-strand-analysis-regions.p-adj-0.05-up.pv0.05
2017-06-22 19:11
25K
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2017-04-21 02:32
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2017-06-23 08:05
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2017-06-23 08:07
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2017-08-29 22:53
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2017-08-29 22:55
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2017-02-14 08:04
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2017-02-14 08:05
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2017-08-29 22:52
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2017-04-19 20:27
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2017-04-19 20:27
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2017-04-17 00:40
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2017-04-17 01:45
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2017-04-17 01:45
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2017-04-17 01:45
1.7M
SPP-300K-IDR-A549-EtOH-GR-Rep1-GSM2095220-vs-GSM2095221-Pooled.IDR_0.05.500bp-radius.complement.bed
2017-04-17 00:40
423K
SPP-300K-IDR-A549-EtOH-GR-Rep1-GSM2095220-vs-GSM2095221-Pooled.IDR_0.05.narrowPeak.regionLen-hist
2017-04-17 00:31
3.0K
STARRseeker.test.EtOH.first_pass_params
2017-04-16 22:19
10M
STARRseq-strand-analysis-regions-200bp-rerun.condor
2017-06-06 01:06
1.7K
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2017-06-06 01:06
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STARRseq-strand-analysis-regions.condor
2017-06-06 10:43
1.3K
clustering/
2017-09-04 22:36
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fragmentCounts.Dex
2017-01-23 04:52
73M
fragmentCounts.Dex.SFC
2017-02-14 05:09
73M
fragmentCounts.Dex.chr14-103070601-103072820
2017-01-23 06:27
3.6K
fragmentCounts.EtOH
2017-01-22 10:56
73M
fragmentCounts.EtOH.1per-sample
2017-04-18 00:35
778K
fragmentCounts.EtOH.SFC
2017-02-14 05:09
73M
fragmentCounts.EtOH.regionLen-hist
2017-04-18 00:35
7.4K
fragmentCounts.EtOH.test.SFC
2017-04-16 18:46
3.8M
readcounts/
2017-04-21 01:39
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z
2017-08-29 22:54
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2017-08-29 22:54
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