Index of /kundaje/marinovg/oak/papers/2018-ENCODE-enhancers/2016-10-31-hg20-migration-K562-HepG2

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]ERANGE2016-11-04 09:00 246  
[TXT]HepG2-DNAse-UW-Rep1-vs-Rep2-Rout.txt2016-11-04 08:16 1.1K 
[ ]HepG2-DNAse-UW-Rep1-vs-Rep2-em.sav2016-11-04 08:16 5.5M 
[TXT]HepG2-DNAse-UW-Rep1-vs-Rep2-npeaks-aboveIDR.txt2016-11-04 08:16 5.1K 
[TXT]HepG2-DNAse-UW-Rep1-vs-Rep2-overlapped-peaks.txt2016-11-04 08:16 5.3M 
[ ]HepG2-DNAse-UW-Rep1-vs-Rep2-plot.ps2016-11-04 08:20 20K 
[ ]HepG2-DNAse-UW-Rep1-vs-Rep2-uri.sav2016-11-04 08:15 7.7M 
[ ]HepG2-DNAse.pooled.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:56 1.7M 
[ ]HepG2-DNAse.pooled.sorted.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:56 2.0M 
[ ]HepG2-DNAse.pooled.sorted.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:56 1.2M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:48 1.8M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 09:15 1.6M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:48 2.1M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:48 1.2M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:48 1.8M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 09:15 1.6M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:48 2.1M 
[ ]HepG2-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:48 1.2M 
[ ]HepG2-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_model.r2016-11-04 07:57 76K 
[ ]HepG2-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:00 2.1M 
[ ]HepG2-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:00 2.5M 
[ ]HepG2-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:01 1.5M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_model.r2016-11-04 07:55 76K 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 07:57 2.1M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 08:15 1.4M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 07:57 2.5M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 07:57 1.6M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_model.r2016-11-04 07:55 76K 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 07:57 2.1M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 08:15 1.4M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 07:57 2.5M 
[ ]HepG2-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 07:57 1.5M 
[TXT]IDR-HepG2-DNAse.pooled.sorted.pseudoRep-Rout.txt2016-11-04 10:18 1.2K 
[ ]IDR-HepG2-DNAse.pooled.sorted.pseudoRep-em.sav2016-11-04 10:18 7.7M 
[TXT]IDR-HepG2-DNAse.pooled.sorted.pseudoRep-npeaks-aboveIDR.txt2016-11-04 10:18 4.8K 
[TXT]IDR-HepG2-DNAse.pooled.sorted.pseudoRep-overlapped-peaks.txt2016-11-04 10:18 7.5M 
[ ]IDR-HepG2-DNAse.pooled.sorted.pseudoRep-plot.ps2016-11-04 10:22 21K 
[ ]IDR-HepG2-DNAse.pooled.sorted.pseudoRep-uri.sav2016-11-04 10:14 7.3M 
[TXT]IDR-HepG2-H3K27ac-Broad-Rep1-vs-Rep2-Rout.txt2016-11-04 08:01 1.2K 
[ ]IDR-HepG2-H3K27ac-Broad-Rep1-vs-Rep2-em.sav2016-11-04 08:01 5.1M 
[TXT]IDR-HepG2-H3K27ac-Broad-Rep1-vs-Rep2-npeaks-aboveIDR.txt2016-11-04 08:01 5.3K 
[TXT]IDR-HepG2-H3K27ac-Broad-Rep1-vs-Rep2-overlapped-peaks.txt2016-11-04 08:01 5.0M 
[ ]IDR-HepG2-H3K27ac-Broad-Rep1-vs-Rep2-plot.ps2016-11-04 08:18 20K 
[ ]IDR-HepG2-H3K27ac-Broad-Rep1-vs-Rep2-uri.sav2016-11-04 07:59 6.7M 
[TXT]IDR-HepG2-H3K27ac.pooled.sorted.pseudoRep-Rout.txt2016-11-04 08:27 1.2K 
[ ]IDR-HepG2-H3K27ac.pooled.sorted.pseudoRep-em.sav2016-11-04 08:27 5.4M 
[TXT]IDR-HepG2-H3K27ac.pooled.sorted.pseudoRep-npeaks-aboveIDR.txt2016-11-04 08:27 4.9K 
[TXT]IDR-HepG2-H3K27ac.pooled.sorted.pseudoRep-overlapped-peaks.txt2016-11-04 08:27 5.3M 
[ ]IDR-HepG2-H3K27ac.pooled.sorted.pseudoRep-plot.ps2016-11-04 08:35 20K 
[ ]IDR-HepG2-H3K27ac.pooled.sorted.pseudoRep-uri.sav2016-11-04 08:27 6.7M 
[ ]IDR-HepG2-K562-npeaks-aboveIDR.files2016-11-04 10:22 692  
[ ]IDR-HepG2-K562-npeaks-aboveIDR.table2016-11-04 10:23 1.5K 
[TXT]IDR-K562-DNAse.pooled.sorted.pseudoRep-Rout.txt2016-11-04 10:12 1.1K 
[ ]IDR-K562-DNAse.pooled.sorted.pseudoRep-em.sav2016-11-04 10:12 9.5M 
[TXT]IDR-K562-DNAse.pooled.sorted.pseudoRep-npeaks-aboveIDR.txt2016-11-04 10:12 4.7K 
[TXT]IDR-K562-DNAse.pooled.sorted.pseudoRep-overlapped-peaks.txt2016-11-04 10:12 9.3M 
[ ]IDR-K562-DNAse.pooled.sorted.pseudoRep-plot.ps2016-11-04 10:22 21K 
[ ]IDR-K562-DNAse.pooled.sorted.pseudoRep-uri.sav2016-11-04 10:12 7.3M 
[TXT]IDR-K562-H3K27ac-Broad-Rep1-vs-Rep2-Rout.txt2016-11-04 08:14 1.2K 
[ ]IDR-K562-H3K27ac-Broad-Rep1-vs-Rep2-em.sav2016-11-04 08:14 4.8M 
[TXT]IDR-K562-H3K27ac-Broad-Rep1-vs-Rep2-npeaks-aboveIDR.txt2016-11-04 08:14 5.4K 
[TXT]IDR-K562-H3K27ac-Broad-Rep1-vs-Rep2-overlapped-peaks.txt2016-11-04 08:14 4.6M 
[ ]IDR-K562-H3K27ac-Broad-Rep1-vs-Rep2-plot.ps2016-11-04 08:18 19K 
[ ]IDR-K562-H3K27ac-Broad-Rep1-vs-Rep2-uri.sav2016-11-04 08:13 7.4M 
[TXT]IDR-K562-H3K27ac.pooled.sorted.pseudoRep-Rout.txt2016-11-04 08:28 1.2K 
[ ]IDR-K562-H3K27ac.pooled.sorted.pseudoRep-em.sav2016-11-04 08:28 6.1M 
[TXT]IDR-K562-H3K27ac.pooled.sorted.pseudoRep-npeaks-aboveIDR.txt2016-11-04 08:28 4.8K 
[TXT]IDR-K562-H3K27ac.pooled.sorted.pseudoRep-overlapped-peaks.txt2016-11-04 08:28 6.1M 
[ ]IDR-K562-H3K27ac.pooled.sorted.pseudoRep-plot.ps2016-11-04 08:35 20K 
[ ]IDR-K562-H3K27ac.pooled.sorted.pseudoRep-uri.sav2016-11-04 08:27 7.0M 
[ ]IDR-MACS-DNAse-pseudoreps.condor2016-11-03 07:38 882  
[ ]IDR-MACS-DNAse.condor2016-11-03 07:39 857  
[ ]IDR-MACS-H3K27ac-pseudoreps.condor2016-11-04 09:00 900  
[ ]IDR-MACS-H3K27ac.condor2016-11-04 08:59 901  
[TXT]K562-DNAse-UW-Rep1-vs-Rep2-Rout.txt2016-11-04 08:12 1.1K 
[ ]K562-DNAse-UW-Rep1-vs-Rep2-em.sav2016-11-04 08:12 9.5M 
[TXT]K562-DNAse-UW-Rep1-vs-Rep2-npeaks-aboveIDR.txt2016-11-04 08:12 5.1K 
[TXT]K562-DNAse-UW-Rep1-vs-Rep2-overlapped-peaks.txt2016-11-04 08:12 9.2M 
[ ]K562-DNAse-UW-Rep1-vs-Rep2-plot.ps2016-11-04 08:20 21K 
[ ]K562-DNAse-UW-Rep1-vs-Rep2-uri.sav2016-11-04 08:07 7.3M 
[ ]K562-DNAse.pooled.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 09:11 2.4M 
[ ]K562-DNAse.pooled.sorted.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 09:11 2.9M 
[ ]K562-DNAse.pooled.sorted.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 09:11 1.6M 
[ ]K562-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:55 2.4M 
[ ]K562-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 09:15 1.8M 
[ ]K562-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:55 2.8M 
[ ]K562-DNAse.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:55 1.6M 
[ ]K562-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:56 2.4M 
[ ]K562-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 09:16 1.8M 
[ ]K562-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:55 2.8M 
[ ]K562-DNAse.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:56 1.6M 
[ ]K562-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_model.r2016-11-04 08:00 76K 
[ ]K562-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:05 2.9M 
[ ]K562-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:05 3.5M 
[ ]K562-H3K27ac.pooled.sorted.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:05 2.1M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_model.r2016-11-04 07:58 76K 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:02 3.4M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 08:15 1.5M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:02 4.0M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:03 2.5M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_model.r2016-11-04 07:58 76K 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-11-04 08:02 3.4M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-11-04 08:15 1.5M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.xls.bz22016-11-04 08:02 4.0M 
[ ]K562-H3K27ac.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_summits.bed.bz22016-11-04 08:03 2.5M 
[ ]MACS2.1.0-DNAse-pseudoreps.condor2016-11-03 07:37 1.5K 
[ ]MACS2.1.0-DNAse.condor2016-11-03 07:29 1.2K 
[ ]MACS2.1.0-H3K27ac-pseudoreps.condor2016-11-04 08:59 1.6K 
[ ]MACS2.1.0-H3K27ac.condor2016-11-04 08:59 1.3K 
[ ]NA_peaks.encodePeak2016-11-03 07:30 40  
[TXT]README.txt2016-11-03 07:30 7.5K 
[ ]Rscript.condor2016-11-04 08:58 2.5K 
[ ]SAMstats-HepG2-Control-Rep1-Broad2016-11-02 20:40 154  
[ ]SAMstats-HepG2-Control-Rep2-Broad2016-11-02 20:51 154  
[ ]SAMstats-HepG2-DNAse-Rep1-UW2016-11-02 21:47 155  
[ ]SAMstats-HepG2-DNAse-Rep2-UW2016-11-02 21:26 154  
[ ]SAMstats-HepG2-H3K27ac-Rep1-Broad2016-11-02 20:58 154  
[ ]SAMstats-HepG2-H3K27ac-Rep2-Broad2016-11-02 21:13 154  
[ ]SAMstats-K562-Control-Rep1-Broad2016-11-02 21:39 155  
[ ]SAMstats-K562-DNAse-Rep1-UW2016-11-02 21:52 155  
[ ]SAMstats-K562-DNAse-Rep2-UW2016-11-02 21:46 155  
[ ]SAMstats-K562-H3K27ac-Rep1-Broad2016-11-02 21:14 155  
[ ]SAMstats-K562-H3K27ac-Rep2-Broad2016-11-02 21:14 154  
[ ]SAMstats.files2016-11-04 08:58 599  
[ ]SAMstats.table2016-11-04 08:58 703  
[ ]batch-consistency-analysis.r2016-11-03 07:30 5.6K 
[ ]batch-consistency-plot-merged2.r2016-11-03 07:30 8.2K 
[ ]batch-consistency-plot.r2016-11-03 07:30 2.5K 
[ ]findall.log2016-11-03 07:42 4.3K 
[ ]functions-all-clayton-12-13.r2016-11-03 07:30 94K 
[TXT]genome_table.txt2016-11-03 07:30 376  
[TXT]idrOverlap2npk.sh2016-11-03 07:30 1.3K 
[ ]map.condor2016-11-04 08:59 7.7K 
[DIR]pdf/2016-11-04 09:27 -  
[TXT]peakCallingPipelineForIdr.txt2016-11-03 07:30 349  
[TXT]submit.idrmerge.lsf.sh2016-11-03 07:30 2.5K 
[TXT]submit.idrpair.lsf.sh2016-11-03 07:30 2.8K 
[ ]z2016-11-04 09:01 6.9K 
[ ]zz-region-stats-ERANGE2016-11-04 08:58 326  
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