is.broadpeak FALSE 
[1] "Fix 2 stops\n"
read C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-uri.sav 
EM is done

EM is saved at: IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-em.sav 
EM estimation for the following files
C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.62952

$rho1
[1] 0.9121653

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 20454.76

$x.mean2
[1] 43684.29

$y.mean1
[1] 20687.3

$y.mean2
[1] 43289.52

$x.sd1
[1] 13849.53

$x.sd2
[1] 9707.358

$y.sd1
[1] 14349.27

$y.sd2
[1] 9402.305