Index of /kundaje/marinovg/oak/papers/2018-ENCODE-enhancers/2016-10-22-ChIP-seq

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]17871.lines2016-10-22 01:30 9  
[ ]17872.lines2016-10-22 01:30 9  
[ ]17873.lines2016-10-21 18:32 9  
[ ]17874.lines2016-10-21 18:32 9  
[ ]17875.lines2016-10-21 18:32 9  
[ ]17876.lines2016-10-21 18:32 9  
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.MACS-2.1.0.p1e-1_model.r2016-10-22 19:16 76K 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 19:25 1.9M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 19:25 2.3M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 19:25 1.3M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_model.r2016-10-22 19:14 76K 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 19:22 2.5M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 20:16 1.5M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 19:22 3.0M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 19:23 1.8M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_model.r2016-10-22 19:14 76K 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 19:22 2.5M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 20:16 1.5M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 19:22 3.0M 
[ ]C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 19:22 1.8M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_5403-5933_IP_F2-17873.mm10.36mers.unique.MACS-2.1.0.p1e-1_model.r2016-10-22 13:57 77K 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_5403-5933_IP_F2-17873.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 14:16 53M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_5403-5933_IP_F2-17873.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 14:13 65M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_5403-5933_IP_F2-17873.mm10.36mers.unique.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 14:18 46M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_model.r2016-10-22 13:56 76K 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 14:08 2.4M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 15:10 1.5M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 14:08 2.8M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 14:08 1.6M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_model.r2016-10-22 13:57 76K 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 14:10 1.8M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 15:10 1.5M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 14:10 2.1M 
[ ]C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 14:10 1.2M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.MACS-2.1.0.p1e-1_model.r2016-10-22 19:17 76K 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 19:26 2.1M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 19:26 2.5M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 19:26 1.4M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_model.r2016-10-22 19:14 76K 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 19:22 2.5M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 20:16 1.6M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 19:22 2.9M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep1.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 19:22 1.7M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_model.r2016-10-22 19:27 76K 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 19:32 2.4M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 20:16 1.6M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 19:32 2.9M 
[ ]C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep2.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 19:32 1.7M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_3367-5933_IP_C3-17876.mm10.36mers.unique.MACS-2.1.0.p1e-1_model.r2016-10-22 14:20 76K 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_3367-5933_IP_C3-17876.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 14:34 2.5M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_3367-5933_IP_C3-17876.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 14:34 3.0M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_3367-5933_IP_C3-17876.mm10.36mers.unique.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 14:34 1.7M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_model.r2016-10-22 14:18 76K 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 14:31 2.3M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 15:10 1.6M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 14:31 2.7M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_B3-17875.mm10.36mers.unique.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 14:32 1.5M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_model.r2016-10-22 14:04 76K 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.bz22016-10-22 14:15 1.9M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort.bz22016-10-22 15:10 1.6M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.xls.bz22016-10-22 14:14 2.3M 
[ ]C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_G2-17874.mm10.36mers.unique.MACS-2.1.0.p1e-1_summits.bed.bz22016-10-22 14:15 1.3M 
[ ]ERANGE2016-10-22 02:01 601  
[ ]IDR-C2C12-H3K27ac-npeaks-aboveIDR.files2016-10-22 22:12 480  
[ ]IDR-C2C12-H3K27ac-npeaks-aboveIDR.table2016-10-22 22:12 895  
[TXT]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-Rout.txt2016-10-22 21:36 1.4K 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-em.sav.bz22016-10-22 21:36 5.3M 
[TXT]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-npeaks-aboveIDR.txt2016-10-22 21:36 7.2K 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-overlapped-peaks.txt.bz22016-10-22 21:36 1.8M 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-plot.ps2016-10-22 22:09 20K 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-uri.sav.bz22016-10-22 21:35 7.1M 
[TXT]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep-Rout.txt2016-10-22 21:28 1.3K 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep-em.sav.bz22016-10-22 21:28 5.3M 
[TXT]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep-npeaks-aboveIDR.txt2016-10-22 21:28 6.0K 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep-overlapped-peaks.txt.bz22016-10-22 21:28 1.8M 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep-plot.ps2016-10-22 22:09 20K 
[ ]IDR-C2C12-myoblast-H3K27ac-17871-vs-17872.pooled.sorted.pseudoRep-uri.sav.bz22016-10-22 21:26 7.1M 
[TXT]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-Rout.txt2016-10-22 21:37 1.4K 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-em.sav.bz22016-10-22 21:37 6.8M 
[TXT]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-npeaks-aboveIDR.txt2016-10-22 21:37 7.2K 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-overlapped-peaks.txt.bz22016-10-22 21:37 2.3M 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-plot.ps2016-10-22 22:09 20K 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875-uri.sav.bz22016-10-22 21:35 6.9M 
[TXT]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep-Rout.txt2016-10-22 21:35 1.3K 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep-em.sav.bz22016-10-22 21:35 6.8M 
[TXT]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep-npeaks-aboveIDR.txt2016-10-22 21:35 6.0K 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep-overlapped-peaks.txt.bz22016-10-22 21:35 2.3M 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep-plot.ps2016-10-22 22:09 20K 
[ ]IDR-C2C12-myocyte-H3K27ac-17874-vs-17875.pooled.sorted.pseudoRep-uri.sav.bz22016-10-22 21:35 6.9M 
[ ]IDR-MACS-H3K27ac-pseudoreps.0.log2016-10-22 23:05 101  
[ ]IDR-MACS-H3K27ac-pseudoreps.1.log2016-10-22 23:05 101  
[ ]IDR-MACS-H3K27ac-pseudoreps.condor2016-10-22 13:52 1.0K 
[ ]IDR-MACS-H3K27ac.0.log2016-10-22 23:05 101  
[ ]IDR-MACS-H3K27ac.1.log2016-10-22 23:05 101  
[ ]MACS2.1.0-IDR-pseudoreps.condor2016-10-22 13:47 2.6K 
[ ]MACS2.1.0-IDR.condor2016-10-22 13:47 3.8K 
[ ]MACS2.1.0.condor2016-10-22 03:30 4.5K 
[ ]NA_peaks.encodePeak2016-10-22 13:50 40  
[TXT]README.txt2016-10-22 13:50 7.5K 
[ ]Rscript.condor2016-10-21 03:17 3.6K 
[ ]SAMstats-C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_5403-5933_IP_F2-17873.mm10.36mers2016-10-22 01:04 155  
[ ]SAMstats-C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_5403-5933_IP_F2-17873.mm10.50mers2016-10-22 00:59 155  
[ ]SAMstats-C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers2016-10-22 00:58 155  
[ ]SAMstats-C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.50mers2016-10-22 00:59 155  
[ ]SAMstats-C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers2016-10-22 01:02 155  
[ ]SAMstats-C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.50mers2016-10-22 01:05 155  
[ ]SAMstats-C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_3367-5933_IP_F2-17876.mm10.36mers2016-10-22 01:16 155  
[ ]SAMstats-C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_3367-5933_IP_F2-17876.mm10.50mers2016-10-22 01:11 155  
[ ]SAMstats-C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_F2-17875.mm10.36mers2016-10-22 01:08 155  
[ ]SAMstats-C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5158-5933_IP_F2-17875.mm10.50mers2016-10-22 01:02 155  
[ ]SAMstats-C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_F2-17874.mm10.36mers2016-10-22 01:03 155  
[ ]SAMstats-C2C12-myocyte-H3K27ac-AM_39113_31814008-RT_Fix_5199-5933_IP_F2-17874.mm10.50mers2016-10-22 01:04 155  
[ ]SAMstats.files2016-10-21 03:19 2.0K 
[ ]SAMstats.table2016-10-22 01:19 1.4K 
[ ]batch-consistency-analysis.r2016-10-22 13:50 5.6K 
[ ]batch-consistency-plot-merged2.r2016-10-22 13:50 8.2K 
[ ]batch-consistency-plot.r2016-10-22 13:50 2.5K 
[ ]findall.log2016-10-22 02:00 10K 
[ ]functions-all-clayton-12-13.r2016-10-22 13:50 94K 
[TXT]genome_table.txt2016-10-22 13:50 376  
[TXT]idrOverlap2npk.sh2016-10-22 13:50 1.3K 
[ ]map.condor2016-10-21 03:12 7.2K 
[DIR]pdf/2016-10-22 01:58 -  
[TXT]peakCallingPipelineForIdr.txt2016-10-22 13:50 349  
[TXT]submit.idrmerge.lsf.sh2016-10-22 13:50 2.5K 
[TXT]submit.idrpair.lsf.sh2016-10-22 13:50 2.8K 
[ ]z2016-10-22 01:58 2.3K 
[ ]zz-region-stats-ERANGE2016-10-22 02:01 708  
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