******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= mm10.Random_Elements.liftOver.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:93642725-93643326 1.0000 601 chr10:80930116-80930840 1.0000 724 chr10:81072192-81072934 1.0000 742 chr10:80940445-80941162 1.0000 717 chr10:45311444-45312243 1.0000 799 chr11:75538249-75538877 1.0000 628 chr11:59311790-59312990 1.0000 1200 chr11:61038023-61038954 1.0000 931 chr11:6481396-6482367 1.0000 971 chr11:59307629-59308768 1.0000 1139 chr11:98671678-98672393 1.0000 715 chr11:90275464-90276273 1.0000 809 chr11:54331278-54332036 1.0000 758 chr11:95533718-95534393 1.0000 675 chr11:67074879-67075569 1.0000 690 chr11:67081014-67081680 1.0000 666 chr11:61062370-61063082 1.0000 712 chr12:52671351-52671937 1.0000 586 chr12:17746987-17747690 1.0000 703 chr12:112617839-11261859 1.0000 754 chr12:27390261-27391004 1.0000 743 chr13:48227498-48228346 1.0000 848 chr13:62855904-62856806 1.0000 902 chr13:37130560-37131151 1.0000 591 chr13:41545980-41546746 1.0000 766 chr13:113262600-11326331 1.0000 717 chr13:99210768-99211374 1.0000 606 chr13:81690312-81691137 1.0000 825 chr13:99323556-99324231 1.0000 675 chr14:46950823-46951599 1.0000 776 chr15:97811911-97812695 1.0000 784 chr15:68194220-68194869 1.0000 649 chr15:66883318-66884276 1.0000 958 chr15:34795064-34795760 1.0000 696 chr15:66891763-66893113 1.0000 1350 chr15:56692195-56692841 1.0000 646 chr15:28133135-28133948 1.0000 813 chr15:75757872-75758579 1.0000 707 chr15:77888063-77888703 1.0000 640 chr15:25915728-25916468 1.0000 740 chr15:66885900-66886633 1.0000 733 chr15:85698553-85699119 1.0000 566 chr15:66877758-66878823 1.0000 1065 chr15:58986361-58987006 1.0000 645 chr16:33940969-33942007 1.0000 1038 chr16:30063016-30064679 1.0000 1663 chr19:42016673-42017472 1.0000 799 chr19:56939731-56940324 1.0000 593 chr1:39449099-39449934 1.0000 835 chr1:91413901-91414660 1.0000 759 chr1:87203702-87204348 1.0000 646 chr1:91407699-91408223 1.0000 524 chr1:91956233-91956817 1.0000 584 chr1:170655330-170656359 1.0000 1029 chr1:36469598-36470779 1.0000 1181 chr1:177441252-177442123 1.0000 871 chr1:92787053-92787745 1.0000 692 chr1:132370626-132371282 1.0000 656 chr2:26502150-26502692 1.0000 542 chr2:26487449-26488199 1.0000 750 chr2:26484919-26485755 1.0000 836 chr2:69673558-69674376 1.0000 818 chr2:160872202-160873163 1.0000 961 chr2:114087212-114087846 1.0000 634 chr3:37128117-37128837 1.0000 720 chr3:87982114-87984371 1.0000 2257 chr3:99254691-99255387 1.0000 696 chr3:88150177-88151021 1.0000 844 chr3:88138276-88138625 1.0000 349 chr3:145654797-145655492 1.0000 695 chr4:43038998-43039732 1.0000 734 chr4:135765567-135766186 1.0000 619 chr4:74251643-74252226 1.0000 583 chr4:141423232-141423917 1.0000 685 chr5:125110919-125111688 1.0000 769 chr5:125056732-125057346 1.0000 614 chr6:72383040-72383702 1.0000 662 chr6:108668244-108668804 1.0000 560 chr6:108668244-108668981 1.0000 737 chr7:63956821-63957364 1.0000 543 chr7:46370884-46371930 1.0000 1046 chr7:45460723-45461396 1.0000 673 chr8:122636472-122637392 1.0000 920 chr8:34679746-34680516 1.0000 770 chr8:111710934-111711702 1.0000 768 chr8:120265441-120266019 1.0000 578 chr8:126583914-126584586 1.0000 672 chr8:118249154-118249839 1.0000 685 chr9:21751868-21752893 1.0000 1025 chr9:44078766-44079440 1.0000 674 chr9:94670098-94670696 1.0000 598 chr9:57831107-57831838 1.0000 731 chrX:93288108-93288864 1.0000 756 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme mm10.Random_Elements.liftOver.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o mm10.Random_Elements.liftOver.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 93 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 72335 N= 93 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.233 C 0.264 G 0.273 T 0.230 Background letter frequencies (from dataset with add-one prior applied): A 0.233 C 0.264 G 0.273 T 0.230 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 10 sites = 93 llr = 785 E-value = 6.5e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 43:9::::11 pos.-specific C 11a:1a::44 probability G 56::9::a21 matrix T 11:1::a:34 bits 2.1 * 1.9 * ** 1.7 ** *** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.2 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ********** 0.0 ---------- Multilevel GGCAGCTGCC consensus AA TT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chr1:91956233-91956817 273 1.10e-06 CGTCACAAAG GGCAGCTGTT CTCAAGCTGT chr7:63956821-63957364 277 4.55e-06 AGCAGGTGCT GGCAGCTGCT ACAGGCCTTA chr1:170655330-170656359 326 4.55e-06 CAGGATGCTC AGCAGCTGTT TAGTTGGGGG chr15:66891763-66893113 584 4.55e-06 TGAGCTGCTG GGCAGCTGCT GAGTCTGAGG chr13:62855904-62856806 413 4.55e-06 CTCCTATGTA AGCAGCTGTT GCTGGGGCAT chr10:93642725-93643326 335 4.55e-06 TCTGGCCACA GGCAGCTGCT GCGCCCGCTA chr9:57831107-57831838 222 8.15e-06 GCAGCCACGG GGCAGCTGCC ATACAGAATG chr9:94670098-94670696 336 8.15e-06 CTGACCACAG AGCAGCTGTC ACAGTGACAG chr8:118249154-118249839 341 8.15e-06 TTACAGTGGG AGCAGCTGCT AAGTGCTCGT chr8:111710934-111711702 330 8.15e-06 GTAGAAGAGC AGCAGCTGTC GGTCTGAAGG chr5:125110919-125111688 388 8.15e-06 GGGCCAAGAC AGCAGCTGCT GGCAGCCATG chr3:87982114-87984371 1687 8.15e-06 AAAGGTTGCC AGCAGCTGTC TCTGAGCCCA chr1:132370626-132371282 292 8.15e-06 GCATGGCAGA AGCAGCTGTC ACCACCGGCC chr16:30063016-30064679 1139 8.15e-06 GCTCGAGCAC AGCAGCTGCT ATTTACCTTC chr15:66885900-66886633 289 8.15e-06 GCAGCTGTGA AGCAGCTGCT CACTGTTCCT chr13:41545980-41546746 397 8.15e-06 CAACCCCGCG AGCAGCTGCT GTAAGCTGCA chr12:112617839-11261859 409 8.15e-06 CCCCAAACTT AGCAGCTGCT ACACTGCCCA chr10:81072192-81072934 262 8.15e-06 GATCAGTGCC AGCAGCTGCT AGTGCCACTG chr10:80930116-80930840 358 8.15e-06 GCCGCGGTGG AGCAGCTGCT GGTGGCCGCG chr5:125056732-125057346 370 9.38e-06 CCGCGCCAGC AGCAGCTGCC ACTTCCAGAA chr1:36469598-36470779 722 9.38e-06 CATTTCCACA AGCAGCTGCC TCAGCTGGCC chr3:88150177-88151021 481 1.46e-05 GGAGGAGGGT GACAGCTGTC TTCAGTGCAG chr3:99254691-99255387 116 1.46e-05 AGCCCGGGGG AACAGCTGTT GTCAAAATCC chr14:46950823-46951599 421 1.46e-05 CAGCACACAC GGCAGCTGGT CTGAAGAACA chr11:67081014-67081680 345 1.46e-05 CTCAGCGCTG GACAGCTGCT TCTACATAGA chr11:54331278-54332036 365 1.46e-05 AGCAGGAAGG GACAGCTGTC AGTATCCAGT chr11:98671678-98672393 382 1.46e-05 CAGTAACTGG GGCAGCTGGT GCTGAGTCAC chr10:45311444-45312243 305 1.46e-05 CTGTGAGGCA GGCAGCTGGT GGATGAATCA chrX:93288108-93288864 370 2.02e-05 GCCGGCTCCC AACAGCTGCT TGGCGGGGGA chr4:74251643-74252226 328 2.02e-05 GTGCGCAGCG AACAGCTGTC ACCCAGTGCG chr4:135765567-135766186 289 2.02e-05 ACAGAGCAAG GACAGCTGCC TGAGAGTCTC chr3:88138276-88138625 175 2.02e-05 TGACGTCAAT AGCAGCTGGT GGAGTTTGGG chr2:26487449-26488199 447 2.02e-05 CTGTGGAGGG GACAGCTGCC CCTGCTGGGC chr15:34795064-34795760 335 2.02e-05 GCATCAGATA GGCAGCTGGC AGGGGTGGGG chr13:81690312-81691137 422 2.02e-05 CCGACTGTGT AACAGCTGTC CCCACAAGCA chr4:43038998-43039732 336 2.26e-05 GGGGATGGGC AGCAGCTGGC ATTAAACAGC chr2:26484919-26485755 526 2.35e-05 AAGGCTCCGC TGCAGCTGTT GACAGACATG chr12:27390261-27391004 455 2.35e-05 AGGACAGCTC TGCAGCTGTT GCTCTGCATA chr11:61038023-61038954 445 2.35e-05 CACCTTCAGC TGCAGCTGTT TTGAGGGAAT chr8:120265441-120266019 287 2.67e-05 GGTCACCCTC TGCAGCTGTC CTCCTTGGCT chr15:56692195-56692841 256 2.67e-05 AGCGTTTCTG TGCAGCTGCT ACAGAGACTC chr15:68194220-68194869 283 2.67e-05 GCTCAGATAC TGCAGCTGCT AAGCAGCTCC chr8:122636472-122637392 569 3.02e-05 AGATCTGTGC GACAGCTGGC GTTTATTTTT chr15:25915728-25916468 289 3.02e-05 GCACTAATCC TGCAGCTGCC CAGATCCCTC chr11:59311790-59312990 504 3.02e-05 CGGACGGGGA GACAGCTGGC CTAATCTTGC chr7:45460723-45461396 370 3.74e-05 TGTGTGGTCA GGCAGCTGTA CGGCTCTGGA chr4:141423232-141423917 649 3.74e-05 TCCCCCAGCT GGCAGCTGAT GGCACAGTCA chr9:21751868-21752893 450 4.39e-05 AATGGCAGGC AGCAGCTGAT TTCTGACACA chr1:92787053-92787745 354 4.39e-05 GGCCGGGCTG GGCAGCTGAC TTCACGCCAC chr1:91413901-91414660 301 4.39e-05 CGTGACAGTT GGCAGCTGCA GCCGCTTCCG chr3:37128117-37128837 306 6.36e-05 GAAAGCTACC AACAGCTGTG GTGCACTTTC chr2:26502150-26502692 258 6.36e-05 GGGAAAAAGC GACAGCTGCG GAGCCCGCCA chr1:177441252-177442123 606 6.36e-05 CCCCTCCCCG CGCAGCTGTC GCCGCCGCCT chr1:39449099-39449934 449 6.36e-05 CTGAGCCAGG GACAGCTGCG GACTCGGGTC chr16:33940969-33942007 507 6.36e-05 CTTGCTGGAT AACAGCTGTG TCATCATTGG chr15:85698553-85699119 270 6.36e-05 GAGTTATCCG GACAGCTGTA GTTGCACACG chr13:113262600-11326331 392 6.36e-05 CCTGGAGTCT GACAGCTGCG TTTGGAGTGC chr12:52671351-52671937 245 6.36e-05 CCTTTTCAGT CGCAGCTGCT GCCTTCTCAT chr11:6481396-6482367 415 6.36e-05 CTCGGCTGAA GCCAGCTGTT GTGTCCACAA chr19:56939731-56940324 156 7.87e-05 AAAATGCCAT GTCAGCTGCT TCCCTACCAG chr19:42016673-42017472 388 7.87e-05 TTCAGTCTGG AGCAGCTGGG GAGGAGCAGC chr15:66877758-66878823 530 7.87e-05 CCATTGCTCA GGCAGCTGGA GAGAATTTGA chr15:28133135-28133948 494 7.87e-05 TGCTTCTGCA GACAGCTGCA GTGTTTGTGC chr13:99323556-99324231 649 7.87e-05 CCCAGTGAAT GTCAGCTGTC TCTTCCTTAT chr11:95533718-95534393 289 7.87e-05 GGACTTGCAC GCCAGCTGTC CACTGCCTCT chr15:58986361-58987006 300 8.92e-05 GCAGCTAAGC AACAGCTGCA AAGGCTGTGT chr13:37130560-37131151 211 8.92e-05 TTTTGCAAAG AACAGCTGCA AAGCAATTTC chr13:48227498-48228346 444 8.92e-05 GAGCCAATGA ATCAGCTGTC GGGGGAGGGA chr8:126583914-126584586 329 1.12e-04 ATTTTAGCGC CGCAGCTGGC GCGGGGCGCC chr1:91407699-91408223 346 1.12e-04 AGGAATGTTG GCCAGCTGGT CACAGCCTCA chr11:61062370-61063082 399 1.12e-04 TCACACTCTC CACAGCTGCC TGGGGGTGGC chr7:46370884-46371930 444 1.18e-04 TATATATAAA GGCTGCTGTT TCCCCATGGT chr11:59307629-59308768 1031 1.18e-04 TTAAGTACAG GTCAGCTGGC TCCCAAGCAG chr11:75538249-75538877 286 1.27e-04 ACTTCATGGT GGCACCTGTT TAATAAACAG chr15:75757872-75758579 298 1.37e-04 CTCGATCCAT GGCACCTGTC GTGGGGCTAA chr2:69673558-69674376 360 1.58e-04 GAGCGACAAG TCCAGCTGTC CCGGGTGCTG chr15:77888063-77888703 353 1.58e-04 CACCCTAGCC TCCAGCTGTC TGCCATGTGC chr3:145654797-145655492 348 1.75e-04 GAGCAGAAAG GACAGCTGAG TGTCTGCTAG chr15:97811911-97812695 333 1.75e-04 GCCTACGCCA GCCAGCTGTG GGCCTGGTCT chr12:17746987-17747690 368 1.75e-04 GAGTGAGCGG GACAGCTGAG GTGGTTTCTT chr6:108668244-108668981 432 1.98e-04 AATAGGGCCT GGCTGCTGGC AAGGCCGCGG chr6:108668244-108668804 432 1.98e-04 AATAGGGCCT GGCTGCTGGC AAGGCCGCGG chr6:72383040-72383702 431 1.98e-04 ACTCCCTCAG AACAGCTGAG ATCCAGGCCT chr11:90275464-90276273 407 1.98e-04 CTAGCTCCAA GGCTGCTGGC ATTCGCACCC chr11:67074879-67075569 339 2.27e-04 GCGGGTGGGG AGCACCTGGC CTCCTGGCCC chr15:66883318-66884276 593 2.44e-04 CTGGGCATGC TGCAGCTGAG GTTTGAGGCT chr9:44078766-44079440 404 2.66e-04 GATCCACCCC CCCAGCTGCT CTGTGGCCAG chr8:34679746-34680516 565 3.43e-04 CCCGGATGTT TGCTGCTGGC CGAGTGACGC chr13:99210768-99211374 250 4.64e-04 ACAGTGTTCC ATCACCTGTC ACTGTCATTC chr1:87203702-87204348 281 4.79e-04 CGGCCTTTGC AACAGGTGGT GGCAAGAGAA chr2:114087212-114087846 470 6.09e-04 GTTTTACTAA TGCAGCAGCC AGGTCTTCAG chr10:80940445-80941162 547 8.36e-04 CAGCCTAGAT GACAGGTGGA CCTGGGGAGG chr2:160872202-160873163 584 1.15e-03 TCGGCGGGCG CTCACCTGGC GGCGGCGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:91956233-91956817 1.1e-06 272_[+1]_302 chr7:63956821-63957364 4.6e-06 276_[+1]_257 chr1:170655330-170656359 4.6e-06 325_[+1]_694 chr15:66891763-66893113 4.6e-06 583_[+1]_757 chr13:62855904-62856806 4.6e-06 412_[+1]_480 chr10:93642725-93643326 4.6e-06 334_[+1]_257 chr9:57831107-57831838 8.1e-06 221_[+1]_500 chr9:94670098-94670696 8.1e-06 335_[+1]_253 chr8:118249154-118249839 8.1e-06 340_[+1]_335 chr8:111710934-111711702 8.1e-06 329_[+1]_429 chr5:125110919-125111688 8.1e-06 387_[+1]_372 chr3:87982114-87984371 8.1e-06 1686_[+1]_561 chr1:132370626-132371282 8.1e-06 291_[+1]_355 chr16:30063016-30064679 8.1e-06 1138_[+1]_515 chr15:66885900-66886633 8.1e-06 288_[+1]_435 chr13:41545980-41546746 8.1e-06 396_[+1]_360 chr12:112617839-11261859 8.1e-06 408_[+1]_336 chr10:81072192-81072934 8.1e-06 261_[+1]_471 chr10:80930116-80930840 8.1e-06 357_[+1]_357 chr5:125056732-125057346 9.4e-06 369_[+1]_235 chr1:36469598-36470779 9.4e-06 721_[+1]_450 chr3:88150177-88151021 1.5e-05 480_[+1]_354 chr3:99254691-99255387 1.5e-05 115_[+1]_571 chr14:46950823-46951599 1.5e-05 420_[+1]_346 chr11:67081014-67081680 1.5e-05 344_[+1]_312 chr11:54331278-54332036 1.5e-05 364_[+1]_384 chr11:98671678-98672393 1.5e-05 381_[+1]_324 chr10:45311444-45312243 1.5e-05 304_[+1]_485 chrX:93288108-93288864 2e-05 369_[+1]_377 chr4:74251643-74252226 2e-05 327_[+1]_246 chr4:135765567-135766186 2e-05 288_[+1]_321 chr3:88138276-88138625 2e-05 174_[+1]_165 chr2:26487449-26488199 2e-05 446_[+1]_294 chr15:34795064-34795760 2e-05 334_[+1]_352 chr13:81690312-81691137 2e-05 421_[+1]_394 chr4:43038998-43039732 2.3e-05 335_[+1]_389 chr2:26484919-26485755 2.4e-05 525_[+1]_301 chr12:27390261-27391004 2.4e-05 454_[+1]_279 chr11:61038023-61038954 2.4e-05 444_[+1]_477 chr8:120265441-120266019 2.7e-05 286_[+1]_282 chr15:56692195-56692841 2.7e-05 255_[+1]_381 chr15:68194220-68194869 2.7e-05 282_[+1]_357 chr8:122636472-122637392 3e-05 568_[+1]_342 chr15:25915728-25916468 3e-05 288_[+1]_442 chr11:59311790-59312990 3e-05 503_[+1]_687 chr7:45460723-45461396 3.7e-05 369_[+1]_294 chr4:141423232-141423917 3.7e-05 648_[+1]_27 chr9:21751868-21752893 4.4e-05 449_[+1]_566 chr1:92787053-92787745 4.4e-05 353_[+1]_329 chr1:91413901-91414660 4.4e-05 300_[+1]_449 chr3:37128117-37128837 6.4e-05 305_[+1]_405 chr2:26502150-26502692 6.4e-05 257_[+1]_275 chr1:177441252-177442123 6.4e-05 605_[+1]_256 chr1:39449099-39449934 6.4e-05 448_[+1]_377 chr16:33940969-33942007 6.4e-05 506_[+1]_522 chr15:85698553-85699119 6.4e-05 269_[+1]_287 chr13:113262600-11326331 6.4e-05 391_[+1]_316 chr12:52671351-52671937 6.4e-05 244_[+1]_332 chr11:6481396-6482367 6.4e-05 414_[+1]_547 chr19:56939731-56940324 7.9e-05 155_[+1]_428 chr19:42016673-42017472 7.9e-05 387_[+1]_402 chr15:66877758-66878823 7.9e-05 529_[+1]_526 chr15:28133135-28133948 7.9e-05 493_[+1]_310 chr13:99323556-99324231 7.9e-05 648_[+1]_17 chr11:95533718-95534393 7.9e-05 288_[+1]_377 chr15:58986361-58987006 8.9e-05 299_[+1]_336 chr13:37130560-37131151 8.9e-05 210_[+1]_371 chr13:48227498-48228346 8.9e-05 443_[+1]_395 chr8:126583914-126584586 0.00011 328_[+1]_334 chr1:91407699-91408223 0.00011 345_[+1]_169 chr11:61062370-61063082 0.00011 398_[+1]_304 chr7:46370884-46371930 0.00012 443_[+1]_593 chr11:59307629-59308768 0.00012 1030_[+1]_99 chr11:75538249-75538877 0.00013 285_[+1]_333 chr15:75757872-75758579 0.00014 297_[+1]_400 chr2:69673558-69674376 0.00016 359_[+1]_449 chr15:77888063-77888703 0.00016 352_[+1]_278 chr3:145654797-145655492 0.00017 347_[+1]_338 chr15:97811911-97812695 0.00017 332_[+1]_442 chr12:17746987-17747690 0.00017 367_[+1]_326 chr6:108668244-108668981 0.0002 431_[+1]_296 chr6:108668244-108668804 0.0002 431_[+1]_119 chr6:72383040-72383702 0.0002 430_[+1]_222 chr11:90275464-90276273 0.0002 406_[+1]_393 chr11:67074879-67075569 0.00023 338_[+1]_342 chr15:66883318-66884276 0.00024 592_[+1]_356 chr9:44078766-44079440 0.00027 403_[+1]_261 chr8:34679746-34680516 0.00034 564_[+1]_196 chr13:99210768-99211374 0.00046 249_[+1]_347 chr1:87203702-87204348 0.00048 280_[+1]_356 chr2:114087212-114087846 0.00061 469_[+1]_155 chr10:80940445-80941162 0.00084 546_[+1]_161 chr2:160872202-160873163 0.0012 583_[+1]_368 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=10 seqs=93 chr1:91956233-91956817 ( 273) GGCAGCTGTT 1 chr7:63956821-63957364 ( 277) GGCAGCTGCT 1 chr1:170655330-170656359 ( 326) AGCAGCTGTT 1 chr15:66891763-66893113 ( 584) GGCAGCTGCT 1 chr13:62855904-62856806 ( 413) AGCAGCTGTT 1 chr10:93642725-93643326 ( 335) GGCAGCTGCT 1 chr9:57831107-57831838 ( 222) GGCAGCTGCC 1 chr9:94670098-94670696 ( 336) AGCAGCTGTC 1 chr8:118249154-118249839 ( 341) AGCAGCTGCT 1 chr8:111710934-111711702 ( 330) AGCAGCTGTC 1 chr5:125110919-125111688 ( 388) AGCAGCTGCT 1 chr3:87982114-87984371 ( 1687) AGCAGCTGTC 1 chr1:132370626-132371282 ( 292) AGCAGCTGTC 1 chr16:30063016-30064679 ( 1139) AGCAGCTGCT 1 chr15:66885900-66886633 ( 289) AGCAGCTGCT 1 chr13:41545980-41546746 ( 397) AGCAGCTGCT 1 chr12:112617839-11261859 ( 409) AGCAGCTGCT 1 chr10:81072192-81072934 ( 262) AGCAGCTGCT 1 chr10:80930116-80930840 ( 358) AGCAGCTGCT 1 chr5:125056732-125057346 ( 370) AGCAGCTGCC 1 chr1:36469598-36470779 ( 722) AGCAGCTGCC 1 chr3:88150177-88151021 ( 481) GACAGCTGTC 1 chr3:99254691-99255387 ( 116) AACAGCTGTT 1 chr14:46950823-46951599 ( 421) GGCAGCTGGT 1 chr11:67081014-67081680 ( 345) GACAGCTGCT 1 chr11:54331278-54332036 ( 365) GACAGCTGTC 1 chr11:98671678-98672393 ( 382) GGCAGCTGGT 1 chr10:45311444-45312243 ( 305) GGCAGCTGGT 1 chrX:93288108-93288864 ( 370) AACAGCTGCT 1 chr4:74251643-74252226 ( 328) AACAGCTGTC 1 chr4:135765567-135766186 ( 289) GACAGCTGCC 1 chr3:88138276-88138625 ( 175) AGCAGCTGGT 1 chr2:26487449-26488199 ( 447) GACAGCTGCC 1 chr15:34795064-34795760 ( 335) GGCAGCTGGC 1 chr13:81690312-81691137 ( 422) AACAGCTGTC 1 chr4:43038998-43039732 ( 336) AGCAGCTGGC 1 chr2:26484919-26485755 ( 526) TGCAGCTGTT 1 chr12:27390261-27391004 ( 455) TGCAGCTGTT 1 chr11:61038023-61038954 ( 445) TGCAGCTGTT 1 chr8:120265441-120266019 ( 287) TGCAGCTGTC 1 chr15:56692195-56692841 ( 256) TGCAGCTGCT 1 chr15:68194220-68194869 ( 283) TGCAGCTGCT 1 chr8:122636472-122637392 ( 569) GACAGCTGGC 1 chr15:25915728-25916468 ( 289) TGCAGCTGCC 1 chr11:59311790-59312990 ( 504) GACAGCTGGC 1 chr7:45460723-45461396 ( 370) GGCAGCTGTA 1 chr4:141423232-141423917 ( 649) GGCAGCTGAT 1 chr9:21751868-21752893 ( 450) AGCAGCTGAT 1 chr1:92787053-92787745 ( 354) GGCAGCTGAC 1 chr1:91413901-91414660 ( 301) GGCAGCTGCA 1 chr3:37128117-37128837 ( 306) AACAGCTGTG 1 chr2:26502150-26502692 ( 258) GACAGCTGCG 1 chr1:177441252-177442123 ( 606) CGCAGCTGTC 1 chr1:39449099-39449934 ( 449) GACAGCTGCG 1 chr16:33940969-33942007 ( 507) AACAGCTGTG 1 chr15:85698553-85699119 ( 270) GACAGCTGTA 1 chr13:113262600-11326331 ( 392) GACAGCTGCG 1 chr12:52671351-52671937 ( 245) CGCAGCTGCT 1 chr11:6481396-6482367 ( 415) GCCAGCTGTT 1 chr19:56939731-56940324 ( 156) GTCAGCTGCT 1 chr19:42016673-42017472 ( 388) AGCAGCTGGG 1 chr15:66877758-66878823 ( 530) GGCAGCTGGA 1 chr15:28133135-28133948 ( 494) GACAGCTGCA 1 chr13:99323556-99324231 ( 649) GTCAGCTGTC 1 chr11:95533718-95534393 ( 289) GCCAGCTGTC 1 chr15:58986361-58987006 ( 300) AACAGCTGCA 1 chr13:37130560-37131151 ( 211) AACAGCTGCA 1 chr13:48227498-48228346 ( 444) ATCAGCTGTC 1 chr8:126583914-126584586 ( 329) CGCAGCTGGC 1 chr1:91407699-91408223 ( 346) GCCAGCTGGT 1 chr11:61062370-61063082 ( 399) CACAGCTGCC 1 chr7:46370884-46371930 ( 444) GGCTGCTGTT 1 chr11:59307629-59308768 ( 1031) GTCAGCTGGC 1 chr11:75538249-75538877 ( 286) GGCACCTGTT 1 chr15:75757872-75758579 ( 298) GGCACCTGTC 1 chr2:69673558-69674376 ( 360) TCCAGCTGTC 1 chr15:77888063-77888703 ( 353) TCCAGCTGTC 1 chr3:145654797-145655492 ( 348) GACAGCTGAG 1 chr15:97811911-97812695 ( 333) GCCAGCTGTG 1 chr12:17746987-17747690 ( 368) GACAGCTGAG 1 chr6:108668244-108668981 ( 432) GGCTGCTGGC 1 chr6:108668244-108668804 ( 432) GGCTGCTGGC 1 chr6:72383040-72383702 ( 431) AACAGCTGAG 1 chr11:90275464-90276273 ( 407) GGCTGCTGGC 1 chr11:67074879-67075569 ( 339) AGCACCTGGC 1 chr15:66883318-66884276 ( 593) TGCAGCTGAG 1 chr9:44078766-44079440 ( 404) CCCAGCTGCT 1 chr8:34679746-34680516 ( 565) TGCTGCTGGC 1 chr13:99210768-99211374 ( 250) ATCACCTGTC 1 chr1:87203702-87204348 ( 281) AACAGGTGGT 1 chr2:114087212-114087846 ( 470) TGCAGCAGCC 1 chr10:80940445-80941162 ( 547) GACAGGTGGA 1 chr2:160872202-160873163 ( 584) CTCACCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 71498 bayes= 9.99905 E= 6.5e-049 61 -203 73 -83 26 -181 109 -183 -1318 192 -1318 -1318 202 -1318 -1318 -210 -1318 -230 179 -1318 -1318 189 -366 -1318 -443 -1318 -1318 210 -1318 -1318 187 -1318 -163 43 -27 58 -144 63 -121 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 93 E= 6.5e-049 0.354839 0.064516 0.451613 0.129032 0.279570 0.075269 0.580645 0.064516 0.000000 1.000000 0.000000 0.000000 0.946237 0.000000 0.000000 0.053763 0.000000 0.053763 0.946237 0.000000 0.000000 0.978495 0.021505 0.000000 0.010753 0.000000 0.000000 0.989247 0.000000 0.000000 1.000000 0.000000 0.075269 0.354839 0.225806 0.344086 0.086022 0.408602 0.118280 0.387097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GA][GA]CAGCTG[CTG][CT] -------------------------------------------------------------------------------- Time 161.63 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 15 sites = 93 llr = 771 E-value = 5.9e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 3142117:1354413 pos.-specific C :::::4::::12::1 probability G 394784:99644396 matrix T 41111131:1::2:: bits 2.1 1.9 1.7 1.5 * * Relative 1.3 * * * Entropy 1.1 * * *** * (12.0 bits) 0.8 * ** *** * 0.6 **** **** * 0.4 ***** ********* 0.2 *************** 0.0 --------------- Multilevel TGGGGCAGGGAGAGG consensus G AA GT AGAG A sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr8:122636472-122637392 695 8.56e-08 TCCATGGTGT GGGGGCAGGGAAAGG CCTCTGTTGA chr3:87982114-87984371 1557 1.06e-07 GTGTGTGGGG GGGGGCAGGGAGAGG GCTAAATTCT chr15:28133135-28133948 135 1.44e-07 GGCGCTGCCC AGAGGCAGGGGAAGG TTGCACTGAC chr3:88150177-88151021 81 2.86e-07 AGCTGCTGTC TGGGGGAGGGGATGG TGGGACTTGG chr2:26502150-26502692 210 8.31e-07 GGGGACCGCA GGAGGGAGGGGGTGG CCACACTCAG chr7:46370884-46371930 903 9.98e-07 AGAGAGGGAA GGAGGGAGGGAGGGA GGGAGGGAGG chr4:135765567-135766186 144 2.28e-06 GGTAAGCCCT TGGGGCTGGAGATGG AGTCCTTGCT chr2:26487449-26488199 492 2.66e-06 CACCAGCGGG TGGGGCAGGAGCTGG GAAGCTGGTG chr16:30063016-30064679 150 3.08e-06 CCATCACAAA GGGGGGTGGGGGGGG CTTGCCCAAG chr9:44078766-44079440 563 3.56e-06 TCTTCCACAC AGAGGCAGGGACTGA GTCGTGTCCC chr3:99254691-99255387 294 3.56e-06 CTACACGGCT TGGGGGTGGGGGGGA AGAGTCAGGC chr13:48227498-48228346 65 3.56e-06 GGAGGAGGGG GGAAGGAGGAGGAGG AGGAGGAGGA chr11:90275464-90276273 769 3.56e-06 ACATGTGGTG AGAGGGAGGTGAAGG CGTGCAGCAA chr11:98671678-98672393 698 4.12e-06 AAAGCATTAG AGTGGAAGGGAAAGG CAC chr10:80940445-80941162 583 4.12e-06 ATATAGGACA AGAGGAAGGAGAGGG GGAGGGAGAA chr4:141423232-141423917 264 4.77e-06 GGGCTGCTCG TGGGGGAGGGCAGGG GCCCTGATGT chr4:43038998-43039732 473 4.77e-06 TGTTAGACCT GGGAGGTGGGAGAGG TTGTGGTACA chr1:92787053-92787745 211 4.77e-06 GCAGGGGCTG TGGGGAAGGGACAGA TGTGCAACAA chr5:125056732-125057346 298 5.48e-06 CTCAAGGACA GGAGGCAGGGAGGGC CAGGGCTCAG chr2:114087212-114087846 64 5.48e-06 AGCAGTTTAA TGAGGGAGAAAAGGG TCATTGAAGA chr8:111710934-111711702 466 7.26e-06 TTCAGCTGTG GGAGGCAGGACAAGG TTAGGCTCTC chr5:125110919-125111688 219 7.26e-06 GGGGGGGTGG GGAGGTAGGGGGAGA CAGGAGTAGT chr8:126583914-126584586 497 8.35e-06 TGGAGGCTCG TGGAGCAGGAACAGA GTAGGACAGG chr19:42016673-42017472 588 1.08e-05 CAGGCTGAGT GGAGTCAGGAAGAGG GAAAAGTGAA chr15:58986361-58987006 338 1.08e-05 TGCAGGCAGC AGGGGGAGGGCAAGA AAGTGACCTT chr15:66891763-66893113 432 1.08e-05 TGCACCTTCC AGAGACAGGGAAGGA GACACGTGGC chr11:61062370-61063082 80 1.08e-05 AACTCTGCCT GGGAGGTGGAGAAGG TGACAACATC chr2:160872202-160873163 417 1.23e-05 CGGGACATCG GGGGGAAGGGGCGGG GCCGCTCGGA chr15:34795064-34795760 656 1.23e-05 TCTTCAGTGG GGAGGTAGGAAGTGA TGAATTCTCG chr15:66883318-66884276 892 1.23e-05 CACAAGCCAC TTAGGGAGGAAGGGG TTCATTTCAC chr1:91413901-91414660 737 1.40e-05 GGAAGACCTT TGAGGAAGGGAAAGT ACAAGCAG chr7:63956821-63957364 182 1.58e-05 CGTCACAGTA TTGGGGAGGGGGGGG GTGACACCAT chr6:108668244-108668981 504 1.58e-05 GAGCGCAGGG TGGGGTAGGAGCTGG GTTTAGGCAG chr6:108668244-108668804 504 1.58e-05 GAGCGCAGGG TGGGGTAGGAGCTGG GTTTAGGCAG chr16:33940969-33942007 824 1.58e-05 GAGAGACAAG ATAGGCAGGGAGTGG CCAGGCACCA chr11:6481396-6482367 285 1.58e-05 AAGAGACAGG TGTGGGAGGTGAGGG GAAGGGTGCA chr15:75757872-75758579 153 1.78e-05 TGGGTGTGTT TGGAGCAGAGGAAGG TGGGTGGGGC chr13:81690312-81691137 114 2.01e-05 AAGACGAGCG GGAAGCAGGTGGAGG TGTGTGAGCT chr19:56939731-56940324 573 2.26e-05 CTGATCATGT AGAGTCAGGAGAGGG AGGAGG chr11:67074879-67075569 76 2.26e-05 GTTTCGTCTC AGAAACAGGGAATGG TTTGGGACTA chr11:59311790-59312990 34 2.26e-05 AACCAAGAGG TGGGTGAGGGGAGGA GAGCTCCCTG chr6:72383040-72383702 29 2.83e-05 CAGAATGGGC TGGGGGTGAAGAGGG TAGGCTCACT chr12:112617839-11261859 451 2.83e-05 GGGCTCACTG AGGGGGTGGGGGTGC TAATTCCGGC chr11:67081014-67081680 300 2.83e-05 CCCAAAGCAG GGAAGGTGGTAAAGG AAGTAGGATG chr15:97811911-97812695 558 3.15e-05 GAGGTGGCCC TATGGAAGGGAAAGG ATGAGAATAC chr13:37130560-37131151 528 3.15e-05 GAGCGGGGCA GGGGGCAGAGGGGGA GAATCATGTA chr11:95533718-95534393 397 3.15e-05 GTCGAAGAGA TGAGGCTGGGTCAGG AGCCTGTCAA chr10:80930116-80930840 590 3.90e-05 ATTTTTTTTG GGGAGGAGGAAAGAG AGTCGCTGCA chr12:17746987-17747690 258 4.33e-05 CTGCCTAGAT GGAGGCAGTAAGTGG CCTCCCATTT chr11:61038023-61038954 849 4.33e-05 GTATCTGAAC TTAGGCTGGGAGGGA GGGGTCCTGT chr7:45460723-45461396 622 4.80e-05 ACTGGGGGAT TGAGGGTGGAACAAA AGACCAAGTC chr1:132370626-132371282 83 4.80e-05 TCATCTGGAG TGAAGCTGAGAGTGG CAAGAAGCCA chr15:68194220-68194869 534 4.80e-05 CAACAGATGC AGTGGCAGGGCCAGG CCCTCTCGAT chr13:62855904-62856806 425 4.80e-05 CAGCTGTTGC TGGGGCATGAAGAGC TGAGCAAATG chr12:27390261-27391004 3 4.80e-05 GT TGTAACAGGGAGGGG AAGACTCATC chr3:145654797-145655492 292 5.87e-05 CGCTCAGGTC TGATGAAGGAGCAGG CACGTGAGTT chr3:88138276-88138625 215 5.87e-05 GAAGTTGGGA TGGGGGTTGGGGGGA GCGGAGCAAG chr1:36469598-36470779 106 5.87e-05 CTGGGTTGTC AAAGACAGGGAGGGG GCAATTGCCC chr12:52671351-52671937 136 5.87e-05 ATGGGAAATG TGTGGCTGGAGAGGC CGTCACACAC chrX:93288108-93288864 149 6.48e-05 AAGAAAAATA AGGGGGTGCGAAAGG AGTACTACAA chr1:39449099-39449934 387 6.48e-05 CAGATAAAAC AGGATGAGGGACAGG AAGGTACCTC chr15:56692195-56692841 127 6.48e-05 TCTGGCTGGG GAGGGGAGGGGGAGC TTCCTAGCCA chr1:91407699-91408223 126 7.14e-05 TTCACACATA GGAAAGAGGGGATGA CTCACAAATG chr4:74251643-74252226 549 7.86e-05 CAGTCAGCTG GGAGGGAGGAGGCGG CCCTGACAGT chr15:77888063-77888703 552 7.86e-05 CCTGTCAGCT GGGAGGAGGATGTGG GAAGGCTTCC chr11:75538249-75538877 432 8.65e-05 TCTGTGGCCA AGTGGGAGGAGAGAA GACAGGAGCA chr15:66877758-66878823 360 9.50e-05 TGCTCCTTCC TGTAGGAGGGAGTGT TTCAAGTTAA chr10:81072192-81072934 658 1.04e-04 TTTTCTGGTG AGAGGCTGGTCAGGG TGAAGCCCCA chr15:25915728-25916468 550 1.14e-04 GGCTGTGGTA AAATGGAGGGACAGG GCTGTGCTGA chr9:94670098-94670696 113 1.25e-04 GCTTCTTGCA TGAGACTGGAGGGGC GATGGTGTAT chr8:120265441-120266019 165 1.25e-04 CTGAGACGCC TGTGGCTGGGAAAAC CAGGCCCCCA chr2:26484919-26485755 77 1.25e-04 TCAGATAGTT TGGGGTTGAAAAGGA CCAGAGTTCC chr13:41545980-41546746 667 1.25e-04 AGGGAAAAAA TGGTGTAGGGAGAAG GCCACAGCAG chr10:93642725-93643326 205 1.25e-04 GGAGCAATCA AGAGGTTGGGAATAA AGAGCACTGG chr8:118249154-118249839 103 1.49e-04 TTGGTCTTGA AGGGGGATGAAGAAA TTTAGGGCTA chr1:170655330-170656359 340 1.49e-04 GCTGTTTAGT TGGGGGAGGATTTGG AGCAGCAGCT chr13:99323556-99324231 391 2.25e-04 AAAATTCTGT TGGGGGTGGGTGGGT TATGTAAGTT chr10:45311444-45312243 509 2.25e-04 GCCATGCTCA GGGTGGAGAGACAGA GCCTGGTAGC chr11:59307629-59308768 684 2.44e-04 GGGCAAGAGG GAGGGCTGAGGATGG CCGTCTGGCC chr13:99210768-99211374 288 2.85e-04 GGGCAGGCAG TGGGTTTGGGAGAAG AGGTTCATGG chr9:21751868-21752893 832 3.08e-04 CCTTGTAGGG AGTGTGTGGGAGAAG CTTGGAGCTT chr3:37128117-37128837 283 3.32e-04 CAGTTTCTTA AGATGCTTGGGGAGA AAGCTACCAA chr15:66885900-66886633 79 3.85e-04 GCACTACCTC TGAGGCAGTTAGTGC GGGTGCCTAA chr1:87203702-87204348 563 4.45e-04 TTGAGGCGAG GGAAGGGGGGACGGG ACTAGAGGAA chr1:91956233-91956817 110 5.12e-04 TCCTGACTTC AGTGAAAGGGATAGA TGGGGTTAGG chr9:57831107-57831838 452 5.49e-04 CTGCCAAGGC GGGGGCAGCAGCAGC CTCGGGCCTG chr15:85698553-85699119 161 5.87e-04 AACACAGTAC TGTTGAATGGGGTGG GGACTTGAAC chr1:177441252-177442123 57 8.14e-04 GTTAGGCACA AAGAACAGGTAAGGA AGAAGTTTAT chr14:46950823-46951599 665 8.14e-04 ATAAACATAA AAGGAAAGGAAAAGT TGTGATGAAT chr8:34679746-34680516 181 1.04e-03 GAAAAAAAAA GGGTGCTTGTGGTGG TCATGGAACA chr11:54331278-54332036 455 1.04e-03 GGCAGCATTC ATAGGCAGGGCTGGA AAACTGGTTG chr2:69673558-69674376 687 1.39e-03 ACTTTAGGAT TATAGCTGTAAAAGA TCTTCATTCA chr13:113262600-11326331 103 2.70e-03 ATGCCTATTT GGAAAATTGAAATAG CTGCATGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:122636472-122637392 8.6e-08 694_[+2]_211 chr3:87982114-87984371 1.1e-07 1556_[+2]_686 chr15:28133135-28133948 1.4e-07 134_[+2]_664 chr3:88150177-88151021 2.9e-07 80_[+2]_749 chr2:26502150-26502692 8.3e-07 209_[+2]_318 chr7:46370884-46371930 1e-06 902_[+2]_129 chr4:135765567-135766186 2.3e-06 143_[+2]_461 chr2:26487449-26488199 2.7e-06 491_[+2]_244 chr16:30063016-30064679 3.1e-06 149_[+2]_1499 chr9:44078766-44079440 3.6e-06 562_[+2]_97 chr3:99254691-99255387 3.6e-06 293_[+2]_388 chr13:48227498-48228346 3.6e-06 64_[+2]_769 chr11:90275464-90276273 3.6e-06 768_[+2]_26 chr11:98671678-98672393 4.1e-06 697_[+2]_3 chr10:80940445-80941162 4.1e-06 582_[+2]_120 chr4:141423232-141423917 4.8e-06 263_[+2]_407 chr4:43038998-43039732 4.8e-06 472_[+2]_247 chr1:92787053-92787745 4.8e-06 210_[+2]_467 chr5:125056732-125057346 5.5e-06 297_[+2]_302 chr2:114087212-114087846 5.5e-06 63_[+2]_556 chr8:111710934-111711702 7.3e-06 465_[+2]_288 chr5:125110919-125111688 7.3e-06 218_[+2]_536 chr8:126583914-126584586 8.3e-06 496_[+2]_161 chr19:42016673-42017472 1.1e-05 587_[+2]_197 chr15:58986361-58987006 1.1e-05 337_[+2]_293 chr15:66891763-66893113 1.1e-05 431_[+2]_904 chr11:61062370-61063082 1.1e-05 79_[+2]_618 chr2:160872202-160873163 1.2e-05 416_[+2]_530 chr15:34795064-34795760 1.2e-05 655_[+2]_26 chr15:66883318-66884276 1.2e-05 891_[+2]_52 chr1:91413901-91414660 1.4e-05 736_[+2]_8 chr7:63956821-63957364 1.6e-05 181_[+2]_347 chr6:108668244-108668981 1.6e-05 503_[+2]_219 chr6:108668244-108668804 1.6e-05 503_[+2]_42 chr16:33940969-33942007 1.6e-05 823_[+2]_200 chr11:6481396-6482367 1.6e-05 284_[+2]_672 chr15:75757872-75758579 1.8e-05 152_[+2]_540 chr13:81690312-81691137 2e-05 113_[+2]_697 chr19:56939731-56940324 2.3e-05 572_[+2]_6 chr11:67074879-67075569 2.3e-05 75_[+2]_600 chr11:59311790-59312990 2.3e-05 33_[+2]_1152 chr6:72383040-72383702 2.8e-05 28_[+2]_619 chr12:112617839-11261859 2.8e-05 450_[+2]_289 chr11:67081014-67081680 2.8e-05 299_[+2]_352 chr15:97811911-97812695 3.2e-05 557_[+2]_212 chr13:37130560-37131151 3.2e-05 527_[+2]_49 chr11:95533718-95534393 3.2e-05 396_[+2]_264 chr10:80930116-80930840 3.9e-05 589_[+2]_120 chr12:17746987-17747690 4.3e-05 257_[+2]_431 chr11:61038023-61038954 4.3e-05 848_[+2]_68 chr7:45460723-45461396 4.8e-05 621_[+2]_37 chr1:132370626-132371282 4.8e-05 82_[+2]_559 chr15:68194220-68194869 4.8e-05 533_[+2]_101 chr13:62855904-62856806 4.8e-05 424_[+2]_463 chr12:27390261-27391004 4.8e-05 2_[+2]_726 chr3:145654797-145655492 5.9e-05 291_[+2]_389 chr3:88138276-88138625 5.9e-05 214_[+2]_120 chr1:36469598-36470779 5.9e-05 105_[+2]_1061 chr12:52671351-52671937 5.9e-05 135_[+2]_436 chrX:93288108-93288864 6.5e-05 148_[+2]_593 chr1:39449099-39449934 6.5e-05 386_[+2]_434 chr15:56692195-56692841 6.5e-05 126_[+2]_505 chr1:91407699-91408223 7.1e-05 125_[+2]_384 chr4:74251643-74252226 7.9e-05 548_[+2]_20 chr15:77888063-77888703 7.9e-05 551_[+2]_74 chr11:75538249-75538877 8.6e-05 431_[+2]_182 chr15:66877758-66878823 9.5e-05 359_[+2]_691 chr10:81072192-81072934 0.0001 657_[+2]_70 chr15:25915728-25916468 0.00011 549_[+2]_176 chr9:94670098-94670696 0.00012 112_[+2]_471 chr8:120265441-120266019 0.00012 164_[+2]_399 chr2:26484919-26485755 0.00012 76_[+2]_745 chr13:41545980-41546746 0.00012 666_[+2]_85 chr10:93642725-93643326 0.00012 204_[+2]_382 chr8:118249154-118249839 0.00015 102_[+2]_568 chr1:170655330-170656359 0.00015 339_[+2]_675 chr13:99323556-99324231 0.00023 390_[+2]_270 chr10:45311444-45312243 0.00023 508_[+2]_276 chr11:59307629-59308768 0.00024 683_[+2]_441 chr13:99210768-99211374 0.00029 287_[+2]_304 chr9:21751868-21752893 0.00031 831_[+2]_179 chr3:37128117-37128837 0.00033 282_[+2]_423 chr15:66885900-66886633 0.00039 78_[+2]_640 chr1:87203702-87204348 0.00044 562_[+2]_69 chr1:91956233-91956817 0.00051 109_[+2]_460 chr9:57831107-57831838 0.00055 451_[+2]_265 chr15:85698553-85699119 0.00059 160_[+2]_391 chr1:177441252-177442123 0.00081 56_[+2]_800 chr14:46950823-46951599 0.00081 664_[+2]_97 chr8:34679746-34680516 0.001 180_[+2]_575 chr11:54331278-54332036 0.001 454_[+2]_289 chr2:69673558-69674376 0.0014 686_[+2]_117 chr13:113262600-11326331 0.0027 102_[+2]_600 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=15 seqs=93 chr8:122636472-122637392 ( 695) GGGGGCAGGGAAAGG 1 chr3:87982114-87984371 ( 1557) GGGGGCAGGGAGAGG 1 chr15:28133135-28133948 ( 135) AGAGGCAGGGGAAGG 1 chr3:88150177-88151021 ( 81) TGGGGGAGGGGATGG 1 chr2:26502150-26502692 ( 210) GGAGGGAGGGGGTGG 1 chr7:46370884-46371930 ( 903) GGAGGGAGGGAGGGA 1 chr4:135765567-135766186 ( 144) TGGGGCTGGAGATGG 1 chr2:26487449-26488199 ( 492) TGGGGCAGGAGCTGG 1 chr16:30063016-30064679 ( 150) GGGGGGTGGGGGGGG 1 chr9:44078766-44079440 ( 563) AGAGGCAGGGACTGA 1 chr3:99254691-99255387 ( 294) TGGGGGTGGGGGGGA 1 chr13:48227498-48228346 ( 65) GGAAGGAGGAGGAGG 1 chr11:90275464-90276273 ( 769) AGAGGGAGGTGAAGG 1 chr11:98671678-98672393 ( 698) AGTGGAAGGGAAAGG 1 chr10:80940445-80941162 ( 583) AGAGGAAGGAGAGGG 1 chr4:141423232-141423917 ( 264) TGGGGGAGGGCAGGG 1 chr4:43038998-43039732 ( 473) GGGAGGTGGGAGAGG 1 chr1:92787053-92787745 ( 211) TGGGGAAGGGACAGA 1 chr5:125056732-125057346 ( 298) GGAGGCAGGGAGGGC 1 chr2:114087212-114087846 ( 64) TGAGGGAGAAAAGGG 1 chr8:111710934-111711702 ( 466) GGAGGCAGGACAAGG 1 chr5:125110919-125111688 ( 219) GGAGGTAGGGGGAGA 1 chr8:126583914-126584586 ( 497) TGGAGCAGGAACAGA 1 chr19:42016673-42017472 ( 588) GGAGTCAGGAAGAGG 1 chr15:58986361-58987006 ( 338) AGGGGGAGGGCAAGA 1 chr15:66891763-66893113 ( 432) AGAGACAGGGAAGGA 1 chr11:61062370-61063082 ( 80) GGGAGGTGGAGAAGG 1 chr2:160872202-160873163 ( 417) GGGGGAAGGGGCGGG 1 chr15:34795064-34795760 ( 656) GGAGGTAGGAAGTGA 1 chr15:66883318-66884276 ( 892) TTAGGGAGGAAGGGG 1 chr1:91413901-91414660 ( 737) TGAGGAAGGGAAAGT 1 chr7:63956821-63957364 ( 182) TTGGGGAGGGGGGGG 1 chr6:108668244-108668981 ( 504) TGGGGTAGGAGCTGG 1 chr6:108668244-108668804 ( 504) TGGGGTAGGAGCTGG 1 chr16:33940969-33942007 ( 824) ATAGGCAGGGAGTGG 1 chr11:6481396-6482367 ( 285) TGTGGGAGGTGAGGG 1 chr15:75757872-75758579 ( 153) TGGAGCAGAGGAAGG 1 chr13:81690312-81691137 ( 114) GGAAGCAGGTGGAGG 1 chr19:56939731-56940324 ( 573) AGAGTCAGGAGAGGG 1 chr11:67074879-67075569 ( 76) AGAAACAGGGAATGG 1 chr11:59311790-59312990 ( 34) TGGGTGAGGGGAGGA 1 chr6:72383040-72383702 ( 29) TGGGGGTGAAGAGGG 1 chr12:112617839-11261859 ( 451) AGGGGGTGGGGGTGC 1 chr11:67081014-67081680 ( 300) GGAAGGTGGTAAAGG 1 chr15:97811911-97812695 ( 558) TATGGAAGGGAAAGG 1 chr13:37130560-37131151 ( 528) GGGGGCAGAGGGGGA 1 chr11:95533718-95534393 ( 397) TGAGGCTGGGTCAGG 1 chr10:80930116-80930840 ( 590) GGGAGGAGGAAAGAG 1 chr12:17746987-17747690 ( 258) GGAGGCAGTAAGTGG 1 chr11:61038023-61038954 ( 849) TTAGGCTGGGAGGGA 1 chr7:45460723-45461396 ( 622) TGAGGGTGGAACAAA 1 chr1:132370626-132371282 ( 83) TGAAGCTGAGAGTGG 1 chr15:68194220-68194869 ( 534) AGTGGCAGGGCCAGG 1 chr13:62855904-62856806 ( 425) TGGGGCATGAAGAGC 1 chr12:27390261-27391004 ( 3) TGTAACAGGGAGGGG 1 chr3:145654797-145655492 ( 292) TGATGAAGGAGCAGG 1 chr3:88138276-88138625 ( 215) TGGGGGTTGGGGGGA 1 chr1:36469598-36470779 ( 106) AAAGACAGGGAGGGG 1 chr12:52671351-52671937 ( 136) TGTGGCTGGAGAGGC 1 chrX:93288108-93288864 ( 149) AGGGGGTGCGAAAGG 1 chr1:39449099-39449934 ( 387) AGGATGAGGGACAGG 1 chr15:56692195-56692841 ( 127) GAGGGGAGGGGGAGC 1 chr1:91407699-91408223 ( 126) GGAAAGAGGGGATGA 1 chr4:74251643-74252226 ( 549) GGAGGGAGGAGGCGG 1 chr15:77888063-77888703 ( 552) GGGAGGAGGATGTGG 1 chr11:75538249-75538877 ( 432) AGTGGGAGGAGAGAA 1 chr15:66877758-66878823 ( 360) TGTAGGAGGGAGTGT 1 chr10:81072192-81072934 ( 658) AGAGGCTGGTCAGGG 1 chr15:25915728-25916468 ( 550) AAATGGAGGGACAGG 1 chr9:94670098-94670696 ( 113) TGAGACTGGAGGGGC 1 chr8:120265441-120266019 ( 165) TGTGGCTGGGAAAAC 1 chr2:26484919-26485755 ( 77) TGGGGTTGAAAAGGA 1 chr13:41545980-41546746 ( 667) TGGTGTAGGGAGAAG 1 chr10:93642725-93643326 ( 205) AGAGGTTGGGAATAA 1 chr8:118249154-118249839 ( 103) AGGGGGATGAAGAAA 1 chr1:170655330-170656359 ( 340) TGGGGGAGGATTTGG 1 chr13:99323556-99324231 ( 391) TGGGGGTGGGTGGGT 1 chr10:45311444-45312243 ( 509) GGGTGGAGAGACAGA 1 chr11:59307629-59308768 ( 684) GAGGGCTGAGGATGG 1 chr13:99210768-99211374 ( 288) TGGGTTTGGGAGAAG 1 chr9:21751868-21752893 ( 832) AGTGTGTGGGAGAAG 1 chr3:37128117-37128837 ( 283) AGATGCTTGGGGAGA 1 chr15:66885900-66886633 ( 79) TGAGGCAGTTAGTGC 1 chr1:87203702-87204348 ( 563) GGAAGGGGGGACGGG 1 chr1:91956233-91956817 ( 110) AGTGAAAGGGATAGA 1 chr9:57831107-57831838 ( 452) GGGGGCAGCAGCAGC 1 chr15:85698553-85699119 ( 161) TGTTGAATGGGGTGG 1 chr1:177441252-177442123 ( 57) AAGAACAGGTAAGGA 1 chr14:46950823-46951599 ( 665) AAGGAAAGGAAAAGT 1 chr8:34679746-34680516 ( 181) GGGTGCTTGTGGTGG 1 chr11:54331278-54332036 ( 455) ATAGGCAGGGCTGGA 1 chr2:69673558-69674376 ( 687) TATAGCTGTAAAAGA 1 chr13:113262600-11326331 ( 103) GGAAAATTGAAATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 71033 bayes= 9.98963 E= 5.9e-025 26 -1318 19 83 -144 -1318 166 -210 85 -1318 69 -72 -19 -1318 140 -161 -112 -1318 160 -183 -98 59 54 -142 156 -1318 -466 39 -1318 -1318 176 -161 -144 -362 166 -283 56 -1318 106 -142 109 -203 54 -242 73 -62 58 -283 85 -461 24 10 -112 -1318 171 -1318 21 -145 112 -242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 93 E= 5.9e-025 0.279570 0.000000 0.311828 0.408602 0.086022 0.000000 0.860215 0.053763 0.419355 0.000000 0.440860 0.139785 0.204301 0.000000 0.720430 0.075269 0.107527 0.000000 0.827957 0.064516 0.118280 0.397849 0.397849 0.086022 0.688172 0.000000 0.010753 0.301075 0.000000 0.000000 0.924731 0.075269 0.086022 0.021505 0.860215 0.032258 0.344086 0.000000 0.569892 0.086022 0.494624 0.064516 0.397849 0.043011 0.387097 0.172043 0.408602 0.032258 0.419355 0.010753 0.322581 0.247312 0.107527 0.000000 0.892473 0.000000 0.268817 0.096774 0.591398 0.043011 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TGA]G[GA][GA]G[CG][AT]GG[GA][AG][GA][AGT]G[GA] -------------------------------------------------------------------------------- Time 320.59 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 25 sites = 93 llr = 838 E-value = 4.9e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 11:2:1151:::2:311:2:1:314 pos.-specific C 5582348:24674445553546362 probability G 1:::31::5111:3111111:1:21 matrix T 3426441525325433335552413 bits 2.1 1.9 1.7 1.5 Relative 1.3 Entropy 1.1 * ** (13.0 bits) 0.8 ** ** 0.6 *** ** ** * * * 0.4 **** ** ***** * ******* 0.2 ************************* 0.0 ------------------------- Multilevel CCCTTTCAGTCCTCCCCCTCTCTCA consensus TT ACC TTCT CTATTTCTCTC T sequence G GT A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr9:44078766-44079440 464 1.07e-08 GCGCACTTGC CCCTCCCAGGCCTCACCTCCTCTCC CCAAGAAGAG chr3:88150177-88151021 300 1.32e-08 CCTCACTGGC CCCTTTCTGTCTTCTTCCTCTGTCT GTGCATCTGT chr15:66877758-66878823 918 1.62e-08 GCCTTCCTGA GTCTCTCTTCCCTCTCCCCTTCACT CCCGGCAGGG chr1:91413901-91414660 215 1.97e-08 TACCCCCAGT CCCTCTCAGCTCCTCCCCCTTCTAT TCTTGGTTCC chr11:61038023-61038954 469 4.25e-08 GGGAATACAG CTTAGCCAGTCCCTACCCTCTTTCA GCTTGTTAGG chr4:43038998-43039732 513 5.11e-08 AACACCTAGG CTCATTCTATCCTTCCCTTCACTCT CAAGACACCC chr11:59307629-59308768 906 1.46e-07 TGTAATGCCT CCCATCCATCCCTCTCTCTCACCCT CGCTTAGCTG chr15:68194220-68194869 48 1.72e-07 AATGCTGTGA CCCTTTCATTTCATACAGTTCCTCA TGTTGCGGTG chr19:42016673-42017472 441 3.26e-07 GGAGACCGAT CCCTCTCTGCTCTCCTGCTCACTCC CGTCTTGGAG chr15:85698553-85699119 368 5.98e-07 TGATAAGGAC TCCTCTCAGTTTCCACTCTGTCACA GCCCTGCCCT chr12:52671351-52671937 359 5.98e-07 CCTCCTTGCA CCCTCCCTGCCCCCTCCCGTCCCCG TCCCCCAGCC chr8:126583914-126584586 126 6.93e-07 TTCACAAATC CCCCTCCTTCCCCCAACCTCCCCCC CTCCCCCAGC chr3:87982114-87984371 2052 6.93e-07 GAACCCCAGG TCCTGGCACTTCTTCTTCCCTTTCA GAGTCCCCTT chr13:113262600-11326331 131 6.93e-07 CATGCCTGTT TCCTTTCTATCCATTCTCATTTCCT TTCTAGGCTC chr10:80940445-80941162 623 6.93e-07 GTGAAGGTGC CTCTCTCAGACCCTCTGCTCTCTCC AGCCTGCCTG chr10:45311444-45312243 385 9.24e-07 CATCACCTGC TCCTGTCAGTTCCCCCTCTTCTAAT AAACTGCATC chr13:41545980-41546746 442 1.06e-06 TCTCTGCAAA CCCAGACTGCCCTTTTCCTCTCTTC TCTTCAAGAA chr9:21751868-21752893 269 1.22e-06 GTCAGGGTCC CCTTTTCTGCTCTCCCGTCTTCTTT GCCTGCAGTT chr3:88138276-88138625 27 1.61e-06 GTCTCTGCAA TTCTTCCTGTTCCTATAGTTTCTAA CACCCCACTT chr11:6481396-6482367 618 1.61e-06 TTCCTGGAGA TTCTGTCTCCCCTGAACCTTCCAGA AGGCCTGTTG chr11:75538249-75538877 175 1.84e-06 CCCTTCCGGG CTCTGGCAGCCGAGTCCTCTTCTCA GCACACTGGC chr6:72383040-72383702 158 2.72e-06 CCACATTTTT GACTCTCAACCCATCCCTTTCCTCA CATGCTCCCA chr12:17746987-17747690 482 3.09e-06 CCCGACCACT TCCTTCCTGTGGTCATCCCCCTCCA GAAATCTGGA chr2:160872202-160873163 34 3.51e-06 AGCCCCACAC CCCACCCACTCCCCAATCACTTCCA ACAGGTTTCT chr1:92787053-92787745 58 3.51e-06 ACCAAGGTCA TCCTGCCAGCCTCTTCCTTCTGACG CTTTGAGGCC chr15:66891763-66893113 363 3.51e-06 CCTCCATGGT CTGTTCCTGTCCTGCCATTTCCAGA AGGCATCTGG chr5:125056732-125057346 55 3.98e-06 CTACATGGCT TTGAGTCAGTCTTGCCCCTCCCCCA CACCCTGGTC chr1:177441252-177442123 820 3.98e-06 GGTCGAGCTG CCCCGTCAGTCCCGCCGCTTCTCCG CCCTCCCGGA chr1:170655330-170656359 779 3.98e-06 TATCCCAGGA TCCTTTCTTTCCAGCCTGCCTCAGC CATACCATCC chr8:34679746-34680516 119 4.50e-06 GGGAGCGAGC TTCATTTATCTTTTATCCCCCCTCA CAATAGCCCA chr5:125110919-125111688 573 4.50e-06 CCACTTGTCC CCTTCGCTCTCCCTGTCCACTCTCA GCCCAGTACT chr13:62855904-62856806 230 4.50e-06 TGACGGCGTC CCCTCCCACTTTACTCCCATCCAGA ATTTGATGTA chr9:94670098-94670696 460 5.73e-06 TGGCAATGCA GTCAGTCAGCGCAGCCTCTTCCACA GGCAGCCAGA chr15:75757872-75758579 109 5.73e-06 CTGGGGCTCT GCCTGTCTGCTCTGTCTGCTTGTCT CTTCTCCAGT chr8:120265441-120266019 17 6.46e-06 TTCCAGAATC ATCCTCCTGTTCCCCACTTTCTCCA GCTTCCTCAC chr3:99254691-99255387 608 7.26e-06 GGAGATTTAT TTCATCCATCCACGACTTTCTCTCT TTGGGAGCAA chr12:112617839-11261859 120 8.16e-06 GGACGGAGAG CACTGCCTCCCCAGCCTTCCTCCCC ATTGCTTTCT chr3:145654797-145655492 106 1.03e-05 AGCACTATTT ACTTGACAGTCGTCCCCCCCTCACA TATTGATATA chr16:33940969-33942007 936 1.03e-05 CCCCAAGGCT TCCAGCCAGTGTTGCTCCCTTCTGC TGCTCAGGGC chr15:34795064-34795760 489 1.03e-05 CCTGGCTTAA CCCTCACTGTCCTCCTGTACTTTGC CTGAGGGACA chr11:61062370-61063082 320 1.03e-05 ATCTGTGCCA CTCATCCAACCCCGCCCCCTGTACT CATTCATTCA chr15:97811911-97812695 169 1.15e-05 GGGCCTCCCA CACCCTCAGCTGCCACTCTCTCCCT CCCATTTTCT chr12:27390261-27391004 280 1.15e-05 TGTGGCTATA CTTGCCCTGCCCTGCCCTTCCCTGA CACCTGCCCT chr15:66883318-66884276 408 1.28e-05 GCCAAGCCAT ATCTGGCTCCTCCTAGCCTTCCTCA CATCTACTTC chr11:59311790-59312990 315 1.43e-05 CCAAGCCCAG CCCCCGCACCCTCCCCCCCCCCAGA CTAGGATGCA chr8:118249154-118249839 529 1.60e-05 CATGTCATCT TCCCCTCAGGTCTCTGTCATCCTCT GTAGTTACAG chr2:69673558-69674376 445 1.60e-05 TGCATAGACA CCCTGTCTTTCCCCAGTGTCCCAAA AGTATTAAGA chr8:122636472-122637392 843 1.78e-05 TGTCGCTGTG CCCACCCATGGCTGCCCCACTCATA CTCCTTGGAC chr4:135765567-135766186 161 1.78e-05 GGAGATGGAG TCCTTGCTCTCCCGCCATTTCTCTT GGAGTTCTGG chr15:56692195-56692841 610 1.78e-05 CGCCTCTGTC GCCACGAAGTTCTCACCCTTACACA GACCCTCCTT chr13:48227498-48228346 529 1.78e-05 ACTCCGCTGG CTCCTCCAGCCCTTGCCGCCCGCCC GGCTCCTTGA chr1:87203702-87204348 529 1.98e-05 CAGTGTAGCA CACTTTCTCTTCTCTTCCAGACTCT TGAGGCGAGG chr15:58986361-58987006 417 2.19e-05 GGGGTAGGGT CTCTGCCTCTACTCTTCCATCCTAT ATAGCAAGTC chr15:66885900-66886633 204 2.19e-05 GCTTTCATCT ACCTCTCTGTCCATCTTTCCCGAGT TCCCTAGAAC chr13:99210768-99211374 64 2.19e-05 GATGTAAACA TCTTTTCATCGGCTATTCTCTTTCT AATTTTATGT chr10:80930116-80930840 29 2.19e-05 TTTTGCAATC TTCTTTTTACCCCTACTTTTTTCTT GGGAAGGGAA chr9:57831107-57831838 705 2.70e-05 CAAGTGATCT GTCTCCCAGTACCTTCTCTGCTTCA AA chr1:36469598-36470779 309 2.70e-05 ATTAAGTCAG CCTCTGCTACCCAGCCTCCCCCACA ACACTGCATG chr16:30063016-30064679 1576 2.70e-05 GCTATCAAAG CCCCCCTTGTTCATTTTTTTTTTCG TTTGAAATTC chr4:141423232-141423917 401 2.99e-05 CTTATTGAGC CCCACCCAGCCCCATCCTATACCCA GCTTCCCTGG chr13:37130560-37131151 463 3.65e-05 CTATTGTAGT TTCTTTCACTTCTGCCAGAATTTCA AATGTTTGCT chr11:95533718-95534393 472 3.65e-05 TCACAGCCAG GTCTCTCTGGCTCTTCCTGCTCTGC AGTCTTTGCC chr11:67081014-67081680 585 4.43e-05 GCTACAGTGC CTCTCTCATTCTCTGTTGTTTCCGG TCAGCCCTGC chr1:132370626-132371282 589 5.37e-05 AATAAAACAA ATCATGCTATTTACTTTTTTTCTCT CTTAAAAATA chr15:77888063-77888703 166 5.37e-05 GCCAAGCAGC TTTATCCTGACCCGACTCCCCTCCC CCAACCTCTG chr10:93642725-93643326 55 5.90e-05 GTCCACACTC CCCCTACTTTTCATAAACCTTTCCC TTTTCAAGTC chr1:39449099-39449934 32 7.77e-05 AACCCTAGGG TCTTTCAACTCTCCCTCCATACACA CCTCACATGA chr11:98671678-98672393 593 7.77e-05 TTCTTATTGT TCTATTTACCTCTTATTTTCTCAGT GATCCAGGCA chr7:46370884-46371930 288 8.50e-05 CCGTGGTTTC ATCCTCCAGTCCTTCAGCCCCCTAG ACCCAAGCCA chr11:54331278-54332036 624 9.30e-05 CGTGTTGTGC CTCTTGCATTCATCCTCTTGTCAGC ATGTCACCCA chr19:56939731-56940324 28 1.02e-04 GCCCCTTGGG GTCTCTTATCTCAGCTACTCACTCC TAAGCTCCAT chr2:26502150-26502692 154 1.11e-04 CAGCAAAGCC CCCCGACAAGCCTCCACCCTTGCCT CAGTTCAAAC chr6:108668244-108668981 567 1.21e-04 GGATAGACAA GCTTCCCACGGCTCATCCCTCCCTA ATGCAGGTCT chr14:46950823-46951599 213 1.21e-04 CTCCTGTTCT TCCTTCCTTCCTGGAAGCCTTCTCA ATCCCCAAAG chr7:45460723-45461396 647 1.32e-04 AGACCAAGTC CCCTTAAAATGGCTTCCTCTTCCCT TC chr4:74251643-74252226 8 1.32e-04 CCTTCTG CTTCGTCAGTGTTTTTCCTCCTTTG AGAAAGAAGA chr15:28133135-28133948 572 1.32e-04 CAGGAATCTC CTCCCCAATCCTCCTTCGCTACTCT GCATTCCTGG chrX:93288108-93288864 418 1.43e-04 GCGCTGACCA CTTTTCCTTGCCCGCAGGCTCCCCC AAGAGCAGCA chr10:81072192-81072934 31 1.43e-04 GGTGGCAGCC CCTTTTCTTTTCCTTGCCAGCCCAT CTTCAGGGCC chr15:25915728-25916468 517 1.56e-04 TCCTGTGAGA TCCATCATTTCTTTCTCTCCTGTGG CTGTGGTAAA chr6:108668244-108668804 236 1.69e-04 CCGGGATGGT CTCACCCAGCGCTGACCTGCCGCGC CTGTTGACAA chr8:111710934-111711702 149 3.42e-04 CATCAGCTGC CTTTGCCTGCCGTGACAGTGTGTCC CCAATGAACA chr2:26484919-26485755 252 3.42e-04 AGTTCACAAC CTCCTATAGCCCTTACCTGACCACC CTGGTGGGCA chr2:26487449-26488199 233 3.68e-04 TCCAAGCTTG CTCACATTCCTCTTCCCTCCGGCCA TGGGCTGTGT chr13:81690312-81691137 450 4.26e-04 CAGAGCACGT GCGTGGCAGCTCATGCACATTCACA TGAGAATGAG chr11:67074879-67075569 24 4.26e-04 AAGAGCTTTG GACTCTCTTTGCTTGAATTCCTTCC TGGCTCAGGG chr3:37128117-37128837 135 4.57e-04 TGGGCTCAAC ATCTCTATTTCTCCAGCTGTTTCCA TTAGAGAAAT chr11:90275464-90276273 469 4.91e-04 TGGCTACCCT CTTGGTTTGGCCTCTGCTTCTCCCT CGGGCACCGC chr2:114087212-114087846 291 5.26e-04 TGATGCAGAT GCCTGCCTCGCCTCCCTCTTGGCTG GTGGCAGTCA chr13:99323556-99324231 150 5.26e-04 CACAGAGTGC CCCACCCTGGCCTCGCGGCTTTCAG ATGTATCTGC chr7:63956821-63957364 51 6.47e-04 CTTAAAGTAC GTGTTTCTTTCCTCTCCTAAGCTTA CAATCACTGT chr1:91407699-91408223 256 1.02e-03 ACTCTGACTG CACAGCAAGGCGTCACACCCTCAGC CACTGGTGGC chr1:91956233-91956817 326 1.46e-03 CATATCAGAG TTCCTGCATATCAGATATTTACATT ACGATTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:44078766-44079440 1.1e-08 463_[+3]_186 chr3:88150177-88151021 1.3e-08 299_[+3]_520 chr15:66877758-66878823 1.6e-08 917_[+3]_123 chr1:91413901-91414660 2e-08 214_[+3]_520 chr11:61038023-61038954 4.3e-08 468_[+3]_438 chr4:43038998-43039732 5.1e-08 512_[+3]_197 chr11:59307629-59308768 1.5e-07 905_[+3]_209 chr15:68194220-68194869 1.7e-07 47_[+3]_577 chr19:42016673-42017472 3.3e-07 440_[+3]_334 chr15:85698553-85699119 6e-07 367_[+3]_174 chr12:52671351-52671937 6e-07 358_[+3]_203 chr8:126583914-126584586 6.9e-07 125_[+3]_522 chr3:87982114-87984371 6.9e-07 2051_[+3]_181 chr13:113262600-11326331 6.9e-07 130_[+3]_562 chr10:80940445-80941162 6.9e-07 622_[+3]_70 chr10:45311444-45312243 9.2e-07 384_[+3]_390 chr13:41545980-41546746 1.1e-06 441_[+3]_300 chr9:21751868-21752893 1.2e-06 268_[+3]_732 chr3:88138276-88138625 1.6e-06 26_[+3]_298 chr11:6481396-6482367 1.6e-06 617_[+3]_329 chr11:75538249-75538877 1.8e-06 174_[+3]_429 chr6:72383040-72383702 2.7e-06 157_[+3]_480 chr12:17746987-17747690 3.1e-06 481_[+3]_197 chr2:160872202-160873163 3.5e-06 33_[+3]_903 chr1:92787053-92787745 3.5e-06 57_[+3]_610 chr15:66891763-66893113 3.5e-06 362_[+3]_963 chr5:125056732-125057346 4e-06 54_[+3]_535 chr1:177441252-177442123 4e-06 819_[+3]_27 chr1:170655330-170656359 4e-06 778_[+3]_226 chr8:34679746-34680516 4.5e-06 118_[+3]_627 chr5:125110919-125111688 4.5e-06 572_[+3]_172 chr13:62855904-62856806 4.5e-06 229_[+3]_648 chr9:94670098-94670696 5.7e-06 459_[+3]_114 chr15:75757872-75758579 5.7e-06 108_[+3]_574 chr8:120265441-120266019 6.5e-06 16_[+3]_537 chr3:99254691-99255387 7.3e-06 607_[+3]_64 chr12:112617839-11261859 8.2e-06 119_[+3]_610 chr3:145654797-145655492 1e-05 105_[+3]_565 chr16:33940969-33942007 1e-05 935_[+3]_78 chr15:34795064-34795760 1e-05 488_[+3]_183 chr11:61062370-61063082 1e-05 319_[+3]_368 chr15:97811911-97812695 1.1e-05 168_[+3]_591 chr12:27390261-27391004 1.1e-05 279_[+3]_439 chr15:66883318-66884276 1.3e-05 407_[+3]_526 chr11:59311790-59312990 1.4e-05 314_[+3]_861 chr8:118249154-118249839 1.6e-05 528_[+3]_132 chr2:69673558-69674376 1.6e-05 444_[+3]_349 chr8:122636472-122637392 1.8e-05 842_[+3]_53 chr4:135765567-135766186 1.8e-05 160_[+3]_434 chr15:56692195-56692841 1.8e-05 609_[+3]_12 chr13:48227498-48228346 1.8e-05 528_[+3]_295 chr1:87203702-87204348 2e-05 528_[+3]_93 chr15:58986361-58987006 2.2e-05 416_[+3]_204 chr15:66885900-66886633 2.2e-05 203_[+3]_505 chr13:99210768-99211374 2.2e-05 63_[+3]_518 chr10:80930116-80930840 2.2e-05 28_[+3]_671 chr9:57831107-57831838 2.7e-05 704_[+3]_2 chr1:36469598-36470779 2.7e-05 308_[+3]_848 chr16:30063016-30064679 2.7e-05 1575_[+3]_63 chr4:141423232-141423917 3e-05 400_[+3]_260 chr13:37130560-37131151 3.6e-05 462_[+3]_104 chr11:95533718-95534393 3.6e-05 471_[+3]_179 chr11:67081014-67081680 4.4e-05 584_[+3]_57 chr1:132370626-132371282 5.4e-05 588_[+3]_43 chr15:77888063-77888703 5.4e-05 165_[+3]_450 chr10:93642725-93643326 5.9e-05 54_[+3]_522 chr1:39449099-39449934 7.8e-05 31_[+3]_779 chr11:98671678-98672393 7.8e-05 592_[+3]_98 chr7:46370884-46371930 8.5e-05 287_[+3]_734 chr11:54331278-54332036 9.3e-05 623_[+3]_110 chr19:56939731-56940324 0.0001 27_[+3]_541 chr2:26502150-26502692 0.00011 153_[+3]_364 chr6:108668244-108668981 0.00012 566_[+3]_146 chr14:46950823-46951599 0.00012 212_[+3]_539 chr7:45460723-45461396 0.00013 646_[+3]_2 chr4:74251643-74252226 0.00013 7_[+3]_551 chr15:28133135-28133948 0.00013 571_[+3]_217 chrX:93288108-93288864 0.00014 417_[+3]_314 chr10:81072192-81072934 0.00014 30_[+3]_687 chr15:25915728-25916468 0.00016 516_[+3]_199 chr6:108668244-108668804 0.00017 235_[+3]_300 chr8:111710934-111711702 0.00034 148_[+3]_595 chr2:26484919-26485755 0.00034 251_[+3]_560 chr2:26487449-26488199 0.00037 232_[+3]_493 chr13:81690312-81691137 0.00043 449_[+3]_351 chr11:67074879-67075569 0.00043 23_[+3]_642 chr3:37128117-37128837 0.00046 134_[+3]_561 chr11:90275464-90276273 0.00049 468_[+3]_316 chr2:114087212-114087846 0.00053 290_[+3]_319 chr13:99323556-99324231 0.00053 149_[+3]_501 chr7:63956821-63957364 0.00065 50_[+3]_468 chr1:91407699-91408223 0.001 255_[+3]_244 chr1:91956233-91956817 0.0015 325_[+3]_234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=25 seqs=93 chr9:44078766-44079440 ( 464) CCCTCCCAGGCCTCACCTCCTCTCC 1 chr3:88150177-88151021 ( 300) CCCTTTCTGTCTTCTTCCTCTGTCT 1 chr15:66877758-66878823 ( 918) GTCTCTCTTCCCTCTCCCCTTCACT 1 chr1:91413901-91414660 ( 215) CCCTCTCAGCTCCTCCCCCTTCTAT 1 chr11:61038023-61038954 ( 469) CTTAGCCAGTCCCTACCCTCTTTCA 1 chr4:43038998-43039732 ( 513) CTCATTCTATCCTTCCCTTCACTCT 1 chr11:59307629-59308768 ( 906) CCCATCCATCCCTCTCTCTCACCCT 1 chr15:68194220-68194869 ( 48) CCCTTTCATTTCATACAGTTCCTCA 1 chr19:42016673-42017472 ( 441) CCCTCTCTGCTCTCCTGCTCACTCC 1 chr15:85698553-85699119 ( 368) TCCTCTCAGTTTCCACTCTGTCACA 1 chr12:52671351-52671937 ( 359) CCCTCCCTGCCCCCTCCCGTCCCCG 1 chr8:126583914-126584586 ( 126) CCCCTCCTTCCCCCAACCTCCCCCC 1 chr3:87982114-87984371 ( 2052) TCCTGGCACTTCTTCTTCCCTTTCA 1 chr13:113262600-11326331 ( 131) TCCTTTCTATCCATTCTCATTTCCT 1 chr10:80940445-80941162 ( 623) CTCTCTCAGACCCTCTGCTCTCTCC 1 chr10:45311444-45312243 ( 385) TCCTGTCAGTTCCCCCTCTTCTAAT 1 chr13:41545980-41546746 ( 442) CCCAGACTGCCCTTTTCCTCTCTTC 1 chr9:21751868-21752893 ( 269) CCTTTTCTGCTCTCCCGTCTTCTTT 1 chr3:88138276-88138625 ( 27) TTCTTCCTGTTCCTATAGTTTCTAA 1 chr11:6481396-6482367 ( 618) TTCTGTCTCCCCTGAACCTTCCAGA 1 chr11:75538249-75538877 ( 175) CTCTGGCAGCCGAGTCCTCTTCTCA 1 chr6:72383040-72383702 ( 158) GACTCTCAACCCATCCCTTTCCTCA 1 chr12:17746987-17747690 ( 482) TCCTTCCTGTGGTCATCCCCCTCCA 1 chr2:160872202-160873163 ( 34) CCCACCCACTCCCCAATCACTTCCA 1 chr1:92787053-92787745 ( 58) TCCTGCCAGCCTCTTCCTTCTGACG 1 chr15:66891763-66893113 ( 363) CTGTTCCTGTCCTGCCATTTCCAGA 1 chr5:125056732-125057346 ( 55) TTGAGTCAGTCTTGCCCCTCCCCCA 1 chr1:177441252-177442123 ( 820) CCCCGTCAGTCCCGCCGCTTCTCCG 1 chr1:170655330-170656359 ( 779) TCCTTTCTTTCCAGCCTGCCTCAGC 1 chr8:34679746-34680516 ( 119) TTCATTTATCTTTTATCCCCCCTCA 1 chr5:125110919-125111688 ( 573) CCTTCGCTCTCCCTGTCCACTCTCA 1 chr13:62855904-62856806 ( 230) CCCTCCCACTTTACTCCCATCCAGA 1 chr9:94670098-94670696 ( 460) GTCAGTCAGCGCAGCCTCTTCCACA 1 chr15:75757872-75758579 ( 109) GCCTGTCTGCTCTGTCTGCTTGTCT 1 chr8:120265441-120266019 ( 17) ATCCTCCTGTTCCCCACTTTCTCCA 1 chr3:99254691-99255387 ( 608) TTCATCCATCCACGACTTTCTCTCT 1 chr12:112617839-11261859 ( 120) CACTGCCTCCCCAGCCTTCCTCCCC 1 chr3:145654797-145655492 ( 106) ACTTGACAGTCGTCCCCCCCTCACA 1 chr16:33940969-33942007 ( 936) TCCAGCCAGTGTTGCTCCCTTCTGC 1 chr15:34795064-34795760 ( 489) CCCTCACTGTCCTCCTGTACTTTGC 1 chr11:61062370-61063082 ( 320) CTCATCCAACCCCGCCCCCTGTACT 1 chr15:97811911-97812695 ( 169) CACCCTCAGCTGCCACTCTCTCCCT 1 chr12:27390261-27391004 ( 280) CTTGCCCTGCCCTGCCCTTCCCTGA 1 chr15:66883318-66884276 ( 408) ATCTGGCTCCTCCTAGCCTTCCTCA 1 chr11:59311790-59312990 ( 315) CCCCCGCACCCTCCCCCCCCCCAGA 1 chr8:118249154-118249839 ( 529) TCCCCTCAGGTCTCTGTCATCCTCT 1 chr2:69673558-69674376 ( 445) CCCTGTCTTTCCCCAGTGTCCCAAA 1 chr8:122636472-122637392 ( 843) CCCACCCATGGCTGCCCCACTCATA 1 chr4:135765567-135766186 ( 161) TCCTTGCTCTCCCGCCATTTCTCTT 1 chr15:56692195-56692841 ( 610) GCCACGAAGTTCTCACCCTTACACA 1 chr13:48227498-48228346 ( 529) CTCCTCCAGCCCTTGCCGCCCGCCC 1 chr1:87203702-87204348 ( 529) CACTTTCTCTTCTCTTCCAGACTCT 1 chr15:58986361-58987006 ( 417) CTCTGCCTCTACTCTTCCATCCTAT 1 chr15:66885900-66886633 ( 204) ACCTCTCTGTCCATCTTTCCCGAGT 1 chr13:99210768-99211374 ( 64) TCTTTTCATCGGCTATTCTCTTTCT 1 chr10:80930116-80930840 ( 29) TTCTTTTTACCCCTACTTTTTTCTT 1 chr9:57831107-57831838 ( 705) GTCTCCCAGTACCTTCTCTGCTTCA 1 chr1:36469598-36470779 ( 309) CCTCTGCTACCCAGCCTCCCCCACA 1 chr16:30063016-30064679 ( 1576) CCCCCCTTGTTCATTTTTTTTTTCG 1 chr4:141423232-141423917 ( 401) CCCACCCAGCCCCATCCTATACCCA 1 chr13:37130560-37131151 ( 463) TTCTTTCACTTCTGCCAGAATTTCA 1 chr11:95533718-95534393 ( 472) GTCTCTCTGGCTCTTCCTGCTCTGC 1 chr11:67081014-67081680 ( 585) CTCTCTCATTCTCTGTTGTTTCCGG 1 chr1:132370626-132371282 ( 589) ATCATGCTATTTACTTTTTTTCTCT 1 chr15:77888063-77888703 ( 166) TTTATCCTGACCCGACTCCCCTCCC 1 chr10:93642725-93643326 ( 55) CCCCTACTTTTCATAAACCTTTCCC 1 chr1:39449099-39449934 ( 32) TCTTTCAACTCTCCCTCCATACACA 1 chr11:98671678-98672393 ( 593) TCTATTTACCTCTTATTTTCTCAGT 1 chr7:46370884-46371930 ( 288) ATCCTCCAGTCCTTCAGCCCCCTAG 1 chr11:54331278-54332036 ( 624) CTCTTGCATTCATCCTCTTGTCAGC 1 chr19:56939731-56940324 ( 28) GTCTCTTATCTCAGCTACTCACTCC 1 chr2:26502150-26502692 ( 154) CCCCGACAAGCCTCCACCCTTGCCT 1 chr6:108668244-108668981 ( 567) GCTTCCCACGGCTCATCCCTCCCTA 1 chr14:46950823-46951599 ( 213) TCCTTCCTTCCTGGAAGCCTTCTCA 1 chr7:45460723-45461396 ( 647) CCCTTAAAATGGCTTCCTCTTCCCT 1 chr4:74251643-74252226 ( 8) CTTCGTCAGTGTTTTTCCTCCTTTG 1 chr15:28133135-28133948 ( 572) CTCCCCAATCCTCCTTCGCTACTCT 1 chrX:93288108-93288864 ( 418) CTTTTCCTTGCCCGCAGGCTCCCCC 1 chr10:81072192-81072934 ( 31) CCTTTTCTTTTCCTTGCCAGCCCAT 1 chr15:25915728-25916468 ( 517) TCCATCATTTCTTTCTCTCCTGTGG 1 chr6:108668244-108668804 ( 236) CTCACCCAGCGCTGACCTGCCGCGC 1 chr8:111710934-111711702 ( 149) CTTTGCCTGCCGTGACAGTGTGTCC 1 chr2:26484919-26485755 ( 252) CTCCTATAGCCCTTACCTGACCACC 1 chr2:26487449-26488199 ( 233) CTCACATTCCTCTTCCCTCCGGCCA 1 chr13:81690312-81691137 ( 450) GCGTGGCAGCTCATGCACATTCACA 1 chr11:67074879-67075569 ( 24) GACTCTCTTTGCTTGAATTCCTTCC 1 chr3:37128117-37128837 ( 135) ATCTCTATTTCTCCAGCTGTTTCCA 1 chr11:90275464-90276273 ( 469) CTTGGTTTGGCCTCTGCTTCTCCCT 1 chr2:114087212-114087846 ( 291) GCCTGCCTCGCCTCCCTCTTGGCTG 1 chr13:99323556-99324231 ( 150) CCCACCCTGGCCTCGCGGCTTTCAG 1 chr7:63956821-63957364 ( 51) GTGTTTCTTTCCTCTCCTAAGCTTA 1 chr1:91407699-91408223 ( 256) CACAGCAAGGCGTCACACCCTCAGC 1 chr1:91956233-91956817 ( 326) TTCCTGCATATCAGATATTTACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 70103 bayes= 9.9706 E= 4.9e-027 -163 100 -97 17 -185 97 -1318 87 -1318 157 -266 -42 2 -62 -366 131 -1318 38 -8 79 -144 55 -108 79 -163 167 -1318 -142 115 -1318 -1318 107 -127 -53 79 10 -285 55 -121 101 -344 114 -134 34 -344 143 -167 -33 -44 43 -466 101 -443 51 -8 63 37 51 -208 17 -112 103 -208 34 -85 94 -150 22 -1318 103 -108 54 -53 34 -234 97 -285 77 -208 97 -112 47 -266 107 -1318 129 -121 4 15 24 -1318 90 -144 126 -67 -110 69 -23 -134 34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 93 E= 4.9e-027 0.075269 0.526882 0.139785 0.258065 0.064516 0.516129 0.000000 0.419355 0.000000 0.784946 0.043011 0.172043 0.236559 0.172043 0.021505 0.569892 0.000000 0.344086 0.258065 0.397849 0.086022 0.387097 0.129032 0.397849 0.075269 0.838710 0.000000 0.086022 0.516129 0.000000 0.000000 0.483871 0.096774 0.182796 0.473118 0.247312 0.032258 0.387097 0.118280 0.462366 0.021505 0.580645 0.107527 0.290323 0.021505 0.709677 0.086022 0.182796 0.172043 0.354839 0.010753 0.462366 0.010753 0.376344 0.258065 0.354839 0.301075 0.376344 0.064516 0.258065 0.107527 0.537634 0.064516 0.290323 0.129032 0.505376 0.096774 0.268817 0.000000 0.537634 0.129032 0.333333 0.161290 0.333333 0.053763 0.451613 0.032258 0.451613 0.064516 0.451613 0.107527 0.365591 0.043011 0.483871 0.000000 0.645161 0.118280 0.236559 0.258065 0.311828 0.000000 0.430108 0.086022 0.634409 0.172043 0.107527 0.376344 0.225806 0.107527 0.290323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CT][CT]C[TA][TCG][TC]C[AT][GT][TC][CT]C[TC][CTG][CAT][CT][CT][CT][TC][CT][TC][CT][TCA]C[ATC] -------------------------------------------------------------------------------- Time 476.08 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 21 sites = 26 llr = 368 E-value = 8.5e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 877375a77567987697957 pos.-specific C 2::2:2:::11:1:1::::11 probability G :::211:2:233::13:1:2: matrix T :33323:132:::211:2:22 bits 2.1 1.9 * 1.7 * * * 1.5 * ** * * Relative 1.3 ** * * *** * * Entropy 1.1 *** *** *** * * (20.4 bits) 0.8 *** *** *** **** * 0.6 *** * *** ********* * 0.4 *** * *************** 0.2 ********************* 0.0 --------------------- Multilevel AAATAAAAAAAAAAAAAAAAA consensus TTATT T GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr1:36469598-36470779 1081 1.03e-13 ACCTTGTCTC AAAAAAAAAAAAAAAAAAAAA CAAACAAAAA chr13:62855904-62856806 53 1.03e-13 AAGGGGTGGC AAAAAAAAAAAAAAAAAAAAA AAAAAAAAAG chr15:66883318-66884276 223 1.69e-11 TGCTCTTGCC AAATTAAAAAAAAAAAAAAAT CCTATCTGCA chr10:93642725-93643326 411 2.03e-11 TTTGACGTGG AATTAAAAAAGAAAAGAAAAA TAATGCCCGA chrX:93288108-93288864 271 2.29e-10 AGAAAAAATG AATCAGAAAAAAAAAAAAAAA GAATCCGGAA chr13:81690312-81691137 48 2.00e-09 TTCATGAAAA AAATTAATAACAAAAAAAAAA TTTAAGTGGC chr7:46370884-46371930 963 2.94e-09 AGGAAGGAAG AAAGAAAGAAAGAAAGAAAGA AAGAAAGAAA chr2:26484919-26485755 752 1.93e-08 AACCTCACCT CAATAAAAAAGAAATAATAAT GACTGTTAAT chr12:27390261-27391004 113 2.96e-08 TGGTGGTGAT AAATAAAATGGAAAAGAAATC TGGAGATATT chr13:37130560-37131151 159 4.46e-08 TGTCATTAGG AATCTTAAATGGAAAAAAATA AGACCGTATT chr1:132370626-132371282 614 8.05e-08 TTTTTTCTCT CTTAAAAATAAAATAAATAGA GTTGGGCATA chr15:77888063-77888703 132 2.40e-07 AGATAGATAG ATAGATAGATAGATAGATAAA ATAGCCAAGC chr12:17746987-17747690 65 3.09e-07 GAAAGTTGGC AAAAATATAGGACAAAAAAGT CACTGAAGGC chr11:6481396-6482367 191 4.30e-07 TTGGATACAT ATTTGTTGAAGAAAAAAAAAA GCTGAAACTT chr3:99254691-99255387 584 4.67e-07 TAGTCGATGA AAAGAAAATTAAAAGGAGATT TATTTCATCC chr3:145654797-145655492 136 1.09e-06 TCACATATTG ATATAAAATCAGATCTATAAA CCAAAAGACT chr2:69673558-69674376 720 1.17e-06 CATCTCTGTA AATTTTAAACAAAACATGAAA CATTGAGAAC chr11:90275464-90276273 580 1.17e-06 TCGAGACAGC CTTAACAAAAAAAAAAATCTT GCTTTTGACT chr10:45311444-45312243 126 1.26e-06 TTTAAGAGAA AAACTGAATAAACTGGAAAAA ACTGGATGAC chr8:34679746-34680516 476 1.46e-06 ATGGGCTTGG CTATAAAAAGCAAATTAAACA GCCATTGTTC chr11:98671678-98672393 259 1.46e-06 CAGTTCCAAT AAAAACAATAGGATGGAGAGA TCTGTAGACA chr11:59307629-59308768 452 1.68e-06 GGTGTATCCT GTTCTCAAAGAAAATAAAATA TTTTCATGGG chr13:48227498-48228346 226 2.07e-06 GGAAAGCAGG AAAGCTAAAGAGAAAGAAACC CAGCCGGCGT chr6:72383040-72383702 475 2.54e-06 AAAAGCAAGG ATAGACAAAAGACAAACAGAA CAACCCACAA chr13:99323556-99324231 471 2.71e-06 CACCCATTTT TAAAACAGACCAAACAAAAGA GAGCCCCCAT chr8:122636472-122637392 102 2.90e-06 TTCTTGCATC ATAAGTAGTTAGAAAGAAAAG CCCCAAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:36469598-36470779 1e-13 1080_[+4]_80 chr13:62855904-62856806 1e-13 52_[+4]_829 chr15:66883318-66884276 1.7e-11 222_[+4]_715 chr10:93642725-93643326 2e-11 410_[+4]_170 chrX:93288108-93288864 2.3e-10 270_[+4]_465 chr13:81690312-81691137 2e-09 47_[+4]_757 chr7:46370884-46371930 2.9e-09 962_[+4]_63 chr2:26484919-26485755 1.9e-08 751_[+4]_64 chr12:27390261-27391004 3e-08 112_[+4]_610 chr13:37130560-37131151 4.5e-08 158_[+4]_412 chr1:132370626-132371282 8e-08 613_[+4]_22 chr15:77888063-77888703 2.4e-07 131_[+4]_488 chr12:17746987-17747690 3.1e-07 64_[+4]_618 chr11:6481396-6482367 4.3e-07 190_[+4]_760 chr3:99254691-99255387 4.7e-07 583_[+4]_92 chr3:145654797-145655492 1.1e-06 135_[+4]_539 chr2:69673558-69674376 1.2e-06 719_[+4]_78 chr11:90275464-90276273 1.2e-06 579_[+4]_209 chr10:45311444-45312243 1.3e-06 125_[+4]_653 chr8:34679746-34680516 1.5e-06 475_[+4]_274 chr11:98671678-98672393 1.5e-06 258_[+4]_436 chr11:59307629-59308768 1.7e-06 451_[+4]_667 chr13:48227498-48228346 2.1e-06 225_[+4]_602 chr6:72383040-72383702 2.5e-06 474_[+4]_167 chr13:99323556-99324231 2.7e-06 470_[+4]_184 chr8:122636472-122637392 2.9e-06 101_[+4]_798 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=21 seqs=26 chr1:36469598-36470779 ( 1081) AAAAAAAAAAAAAAAAAAAAA 1 chr13:62855904-62856806 ( 53) AAAAAAAAAAAAAAAAAAAAA 1 chr15:66883318-66884276 ( 223) AAATTAAAAAAAAAAAAAAAT 1 chr10:93642725-93643326 ( 411) AATTAAAAAAGAAAAGAAAAA 1 chrX:93288108-93288864 ( 271) AATCAGAAAAAAAAAAAAAAA 1 chr13:81690312-81691137 ( 48) AAATTAATAACAAAAAAAAAA 1 chr7:46370884-46371930 ( 963) AAAGAAAGAAAGAAAGAAAGA 1 chr2:26484919-26485755 ( 752) CAATAAAAAAGAAATAATAAT 1 chr12:27390261-27391004 ( 113) AAATAAAATGGAAAAGAAATC 1 chr13:37130560-37131151 ( 159) AATCTTAAATGGAAAAAAATA 1 chr1:132370626-132371282 ( 614) CTTAAAAATAAAATAAATAGA 1 chr15:77888063-77888703 ( 132) ATAGATAGATAGATAGATAAA 1 chr12:17746987-17747690 ( 65) AAAAATATAGGACAAAAAAGT 1 chr11:6481396-6482367 ( 191) ATTTGTTGAAGAAAAAAAAAA 1 chr3:99254691-99255387 ( 584) AAAGAAAATTAAAAGGAGATT 1 chr3:145654797-145655492 ( 136) ATATAAAATCAGATCTATAAA 1 chr2:69673558-69674376 ( 720) AATTTTAAACAAAACATGAAA 1 chr11:90275464-90276273 ( 580) CTTAACAAAAAAAAAAATCTT 1 chr10:45311444-45312243 ( 126) AAACTGAATAAACTGGAAAAA 1 chr8:34679746-34680516 ( 476) CTATAAAAAGCAAATTAAACA 1 chr11:98671678-98672393 ( 259) AAAAACAATAGGATGGAGAGA 1 chr11:59307629-59308768 ( 452) GTTCTCAAAGAAAATAAAATA 1 chr13:48227498-48228346 ( 226) AAAGCTAAAGAGAAAGAAACC 1 chr6:72383040-72383702 ( 475) ATAGACAAAAGACAAACAGAA 1 chr13:99323556-99324231 ( 471) TAAAACAGACCAAACAAAAGA 1 chr8:122636472-122637392 ( 102) ATAAGTAGTTAGAAAGAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 70475 bayes= 12.5685 E= 8.5e-015 172 -78 -282 -258 149 -1134 -1134 59 157 -1134 -1134 42 40 -78 -50 59 149 -278 -183 0 99 -46 -183 23 204 -1134 -1134 -258 165 -1134 -50 -158 165 -1134 -1134 23 121 -119 -50 -58 131 -119 17 -1134 165 -1134 -2 -1134 192 -119 -1134 -1134 179 -1134 -1134 -26 149 -119 -124 -99 131 -1134 34 -158 199 -278 -1134 -258 157 -1134 -124 -26 199 -278 -282 -1134 121 -178 -50 -26 157 -178 -282 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 26 E= 8.5e-015 0.769231 0.153846 0.038462 0.038462 0.653846 0.000000 0.000000 0.346154 0.692308 0.000000 0.000000 0.307692 0.307692 0.153846 0.192308 0.346154 0.653846 0.038462 0.076923 0.230769 0.461538 0.192308 0.076923 0.269231 0.961538 0.000000 0.000000 0.038462 0.730769 0.000000 0.192308 0.076923 0.730769 0.000000 0.000000 0.269231 0.538462 0.115385 0.192308 0.153846 0.576923 0.115385 0.307692 0.000000 0.730769 0.000000 0.269231 0.000000 0.884615 0.115385 0.000000 0.000000 0.807692 0.000000 0.000000 0.192308 0.653846 0.115385 0.115385 0.115385 0.576923 0.000000 0.346154 0.076923 0.923077 0.038462 0.000000 0.038462 0.692308 0.000000 0.115385 0.192308 0.923077 0.038462 0.038462 0.000000 0.538462 0.076923 0.192308 0.192308 0.692308 0.076923 0.038462 0.192308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- A[AT][AT][TA][AT][AT]AA[AT]A[AG][AG]AAA[AG]AAAAA -------------------------------------------------------------------------------- Time 627.32 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 25 sites = 22 llr = 329 E-value = 1.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 4:::::223:12:23:112313643 pos.-specific C 1:41::::::::2:2:3232:42:: probability G :5111222:3::1:134:1::2::: matrix T 5558986677987847275591257 bits 2.1 1.9 1.7 * 1.5 * * * Relative 1.3 ** ** * * * Entropy 1.1 * *** * **** * * * (21.6 bits) 0.8 * *** ****** * * * *** 0.6 ** *********** * * ** *** 0.4 ************** * * ** *** 0.2 ************************* 0.0 ------------------------- Multilevel TTTTTTTTTTTTTTTTGTTTTCATT consensus AGC GAAAG A AGCCCA A AA sequence C T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr13:99210768-99211374 118 3.91e-14 GGTATATGTG TTTTTTTTTTTTTTATGTATTCATT CTATCCAATT chr19:42016673-42017472 49 1.35e-11 ATTTCAAAAC TGCTTTTTTTTTTTTTTTTTAAATT TAATGTTCTA chr1:132370626-132371282 557 1.15e-09 TTTCTTTAAG ATTTTTGTTTTTCTCTGCCTTAAAT AAAACAAATC chr2:69673558-69674376 601 2.38e-09 GTTTTGTATT TGCTTTTGTTTATTTTATTTTTATA AGCCAAGTAG chr15:77888063-77888703 232 2.67e-09 GGTTGTTTTG TTTTGTTTTGTTTTGTCTTATCCTT TTCAGAATTC chr15:66885900-66886633 678 5.30e-09 CAGAACAGGC ATCTTTTTTTTTTCCTGCTATAAAA GGTGAAAGAA chr11:90275464-90276273 88 1.12e-08 TGGTCTTAGA TTTTTTTTTTAACATTGTAATCAAT GTCTAGTTGA chr10:80930116-80930840 637 1.87e-08 CGCAAGTTTG AGGTTTTGTGTTTTTTGTTTTGACA AGGCAACCCC chr1:91407699-91408223 92 3.69e-08 CGCAAACAGG TGTTTTGTTGTTGTTGTTGTTGAAT TCACACATAG chr11:54331278-54332036 27 9.10e-08 GGTTTCAGGA TTTTTTAAACTATATTTTATTAAAT TCTTTCAGAA chr9:94670098-94670696 38 9.92e-08 TGGAGCTACT CGCGTTTAATTTTTTGCTCATCCTT ACCATTTTAA chr3:145654797-145655492 162 9.92e-08 ATAAACCAAA AGACTGTTTTTTTAATTTTCTAAAT GCCAGGTTTA chr11:59307629-59308768 492 1.51e-07 GAAATTTTCC CTTTGTGTTTTTCTTTCTCCTCCTT TCTCCTCCGT chr15:28133135-28133948 184 1.78e-07 TTCCAAGGTT TGGTTTAATGAATTAGATTTTCATT AGAGCCCTGA chr11:6481396-6482367 110 2.27e-07 TAGAAAGAAA ATTGTTATTTTTTTAGCTAATGTTG AGTTTTGAGA chr7:46370884-46371930 810 2.87e-07 TTTATTTCGG TTTTTGTTATTTGTGTGCTTGCTTT GCTTTGCTTT chr16:33940969-33942007 288 2.87e-07 CGAGCGTGGG GGCTTTGGATTTTTCTGCTCTATTT ATACTGATAA chr1:87203702-87204348 158 3.10e-07 ACAGATCGAC TTCTTGTTGTTATTAGTTGATTAAT GAAGCCTGGC chr13:41545980-41546746 29 3.34e-07 TTCTGTGTGT TGGGTTTAAGTTTTCTGACATCTTT TCTTGAACAA chr11:67074879-67075569 604 4.52e-07 TAACGAGAAA ATTCTGAGATTTTTCTCTTTAGATA GACACCTTAA chr9:21751868-21752893 14 6.97e-07 CCTGGGCTTC AGCTTTTATTTTCAAGGCCCTGCAA AGCCAAGTGT chr15:58986361-58987006 133 7.47e-07 TGAAAAGGAA ATCTTGATTGCTTTGTCACTTCAAA TTCCGACATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:99210768-99211374 3.9e-14 117_[+5]_464 chr19:42016673-42017472 1.3e-11 48_[+5]_726 chr1:132370626-132371282 1.1e-09 556_[+5]_75 chr2:69673558-69674376 2.4e-09 600_[+5]_193 chr15:77888063-77888703 2.7e-09 231_[+5]_384 chr15:66885900-66886633 5.3e-09 677_[+5]_31 chr11:90275464-90276273 1.1e-08 87_[+5]_697 chr10:80930116-80930840 1.9e-08 636_[+5]_63 chr1:91407699-91408223 3.7e-08 91_[+5]_408 chr11:54331278-54332036 9.1e-08 26_[+5]_707 chr9:94670098-94670696 9.9e-08 37_[+5]_536 chr3:145654797-145655492 9.9e-08 161_[+5]_509 chr11:59307629-59308768 1.5e-07 491_[+5]_623 chr15:28133135-28133948 1.8e-07 183_[+5]_605 chr11:6481396-6482367 2.3e-07 109_[+5]_837 chr7:46370884-46371930 2.9e-07 809_[+5]_212 chr16:33940969-33942007 2.9e-07 287_[+5]_726 chr1:87203702-87204348 3.1e-07 157_[+5]_464 chr13:41545980-41546746 3.3e-07 28_[+5]_713 chr11:67074879-67075569 4.5e-07 603_[+5]_62 chr9:21751868-21752893 7e-07 13_[+5]_987 chr15:58986361-58987006 7.5e-07 132_[+5]_488 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=25 seqs=22 chr13:99210768-99211374 ( 118) TTTTTTTTTTTTTTATGTATTCATT 1 chr19:42016673-42017472 ( 49) TGCTTTTTTTTTTTTTTTTTAAATT 1 chr1:132370626-132371282 ( 557) ATTTTTGTTTTTCTCTGCCTTAAAT 1 chr2:69673558-69674376 ( 601) TGCTTTTGTTTATTTTATTTTTATA 1 chr15:77888063-77888703 ( 232) TTTTGTTTTGTTTTGTCTTATCCTT 1 chr15:66885900-66886633 ( 678) ATCTTTTTTTTTTCCTGCTATAAAA 1 chr11:90275464-90276273 ( 88) TTTTTTTTTTAACATTGTAATCAAT 1 chr10:80930116-80930840 ( 637) AGGTTTTGTGTTTTTTGTTTTGACA 1 chr1:91407699-91408223 ( 92) TGTTTTGTTGTTGTTGTTGTTGAAT 1 chr11:54331278-54332036 ( 27) TTTTTTAAACTATATTTTATTAAAT 1 chr9:94670098-94670696 ( 38) CGCGTTTAATTTTTTGCTCATCCTT 1 chr3:145654797-145655492 ( 162) AGACTGTTTTTTTAATTTTCTAAAT 1 chr11:59307629-59308768 ( 492) CTTTGTGTTTTTCTTTCTCCTCCTT 1 chr15:28133135-28133948 ( 184) TGGTTTAATGAATTAGATTTTCATT 1 chr11:6481396-6482367 ( 110) ATTGTTATTTTTTTAGCTAATGTTG 1 chr7:46370884-46371930 ( 810) TTTTTGTTATTTGTGTGCTTGCTTT 1 chr16:33940969-33942007 ( 288) GGCTTTGGATTTTTCTGCTCTATTT 1 chr1:87203702-87204348 ( 158) TTCTTGTTGTTATTAGTTGATTAAT 1 chr13:41545980-41546746 ( 29) TGGGTTTAAGTTTTCTGACATCTTT 1 chr11:67074879-67075569 ( 604) ATTCTGAGATTTTTCTCTTTAGATA 1 chr9:21751868-21752893 ( 14) AGCTTTTATTTTCAAGGCCCTGCAA 1 chr15:58986361-58987006 ( 133) ATCTTGATTGCTTTGTCACTTCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 70103 bayes= 13.5121 E= 1.2e-005 64 -154 -258 112 -1110 -1110 74 125 -235 46 -100 98 -1110 -154 -100 175 -1110 -1110 -158 198 -1110 -1110 -26 175 -4 -1110 -59 136 -4 -1110 -59 136 23 -1110 -258 157 -1110 -254 0 157 -136 -254 -1110 191 -4 -1110 -1110 175 -1110 -54 -158 166 -36 -254 -1110 175 23 -22 -100 66 -1110 -1110 0 166 -136 5 58 -2 -136 -22 -1110 157 -36 5 -158 98 45 -54 -1110 112 -136 -1110 -258 191 23 63 -26 -134 145 -54 -1110 -34 81 -254 -1110 125 23 -1110 -258 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 22 E= 1.2e-005 0.363636 0.090909 0.045455 0.500000 0.000000 0.000000 0.454545 0.545455 0.045455 0.363636 0.136364 0.454545 0.000000 0.090909 0.136364 0.772727 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.227273 0.772727 0.227273 0.000000 0.181818 0.590909 0.227273 0.000000 0.181818 0.590909 0.272727 0.000000 0.045455 0.681818 0.000000 0.045455 0.272727 0.681818 0.090909 0.045455 0.000000 0.863636 0.227273 0.000000 0.000000 0.772727 0.000000 0.181818 0.090909 0.727273 0.181818 0.045455 0.000000 0.772727 0.272727 0.227273 0.136364 0.363636 0.000000 0.000000 0.272727 0.727273 0.090909 0.272727 0.409091 0.227273 0.090909 0.227273 0.000000 0.681818 0.181818 0.272727 0.090909 0.454545 0.318182 0.181818 0.000000 0.500000 0.090909 0.000000 0.045455 0.863636 0.272727 0.409091 0.227273 0.090909 0.636364 0.181818 0.000000 0.181818 0.409091 0.045455 0.000000 0.545455 0.272727 0.000000 0.045455 0.681818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- [TA][TG][TC]TT[TG][TA][TA][TA][TG]T[TA]TT[TAC][TG][GCT][TC][TC][TA]T[CAG]A[TA][TA] -------------------------------------------------------------------------------- Time 777.03 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 11 sites = 93 llr = 698 E-value = 6.3e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :724538::18 pos.-specific C 9:12:3::891 probability G 1:73442a2:: matrix T :3:1:1::1:2 bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 * ** ** Entropy 1.1 ** ** ** (10.8 bits) 0.8 *** ***** 0.6 *** * ***** 0.4 *** * ***** 0.2 *********** 0.0 ----------- Multilevel CAGAAGAGCCA consensus TAGGAG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr11:61062370-61063082 27 4.77e-07 CAATCCCAGC CAGAAAAGCCA GTGTGACAAA chr11:98671678-98672393 50 4.77e-07 TTTGTGTTTT CAGAAAAGCCA GGAGAAGGGA chr19:42016673-42017472 188 7.25e-07 GTTTTCTTGC CAGAACAGCCA CACAGTCTAG chr9:94670098-94670696 491 1.33e-06 CACAGGCAGC CAGAGGAGCCA GGCAAAGTTA chr9:21751868-21752893 877 3.95e-06 GTCTCTTACT CAGCAGAGCCA CTGGCTGTCT chr15:66891763-66893113 1154 3.95e-06 GAATTGGTGA CAGGGGAGCCA GCATCAGAGT chr4:135765567-135766186 363 6.47e-06 CTGGAGCCCC CTGGAGAGCCA GCCCTTGTAA chr2:26484919-26485755 52 6.47e-06 GGTCCTGGAA CAGGGCAGCCA AAAATCAGAT chr16:33940969-33942007 529 6.47e-06 ATCATTGGAG CTGAGGAGCCA GGCAGGCAGC chr11:54331278-54332036 677 6.47e-06 CTCGATGTCA CAGCACAGCCA CATGCTTTCT chr15:97811911-97812695 496 1.07e-05 GCTGGCCAGG CTGAGCAGCCA GGGATGCAGA chr15:66885900-66886633 345 1.21e-05 GCTGCCAAGT CAAAGCAGCCA GAAGCCAAGA chr4:141423232-141423917 304 1.42e-05 CTCAGGGTGC CTGGGGAGCCA GAGGGCACAG chr1:177441252-177442123 423 1.42e-05 GCGAGCACCG CAGGAGGGCCA GACCCAGCGG chr11:61038023-61038954 245 1.42e-05 AGGCATAGAG CAGGAGGGCCA TTCTCTGTTG chr7:45460723-45461396 184 1.64e-05 TAAGATGGGT CAAGGGAGCCA CGCGGAGCAG chr12:112617839-11261859 382 1.64e-05 GGTCACACAG CTGCAAAGCCA GACTCCCCCC chr1:91956233-91956817 162 1.77e-05 GCTGCTATGT CAACAAAGCCA TCTGAGTAAT chr5:125110919-125111688 495 2.09e-05 CAACTGCAGC CTGGGCAGCCA GGTGCCCCCA chr15:25915728-25916468 214 2.09e-05 CATTTGATTT GAGAAGAGCCA CTGATCCGAA chr8:118249154-118249839 629 2.40e-05 GATCCCATTG GAGAAAAGCCA GTCATGTGGA chr5:125056732-125057346 248 2.71e-05 CTACAGTGAC CACAAGAGCCA CGTGGCTCCA chr3:87982114-87984371 351 2.71e-05 AGACCGGACA CAGGACAGGCA TGTCCCAGGG chr2:26487449-26488199 683 2.71e-05 GCTGGAGGAC CAGCAGGGCCA CTTGGATGGG chr15:68194220-68194869 619 2.71e-05 GGTTCTTGTT CTGAAGAGGCA AGTCTCTGTT chr13:81690312-81691137 317 2.71e-05 GGACGGTTCA CTAAGAAGCCA AGAAAAGCTA chr8:120265441-120266019 113 3.13e-05 AGGCTCATGG GAGAACAGCCA AGCCTTTGTG chr6:72383040-72383702 462 3.13e-05 TATAAAGACC CAGAAAAGCAA GGATAGACAA chr11:95533718-95534393 552 3.44e-05 CTCGAAGAAG CTGAAAAGCCT TGTGAGCTGT chr1:92787053-92787745 320 3.95e-05 TGGAGGCTCC CAAAATAGCCA GGGTGCGGCT chr15:75757872-75758579 232 3.95e-05 CCCAGGCTAG CAGGGAAGGCA GGTCGGCTGA chr7:46370884-46371930 587 4.46e-05 AGGGGGAAAT CAAAGGGGCCA CCTATGGCGG chr15:28133135-28133948 273 4.46e-05 AACCAAAGAC CTAGGGAGCCA ACTACAGGGT chr11:6481396-6482367 755 4.46e-05 TACTGAGCAC GAGGAAAGCCA TGTGGCAAGG chr11:59311790-59312990 978 4.46e-05 TCTCTGTAGT CAGGGAAGCCT CTGGCATGAA chr1:87203702-87204348 243 4.96e-05 CCCTTGGGTG CTGAGGAGGCA TCACTGGTTA chr16:30063016-30064679 413 4.96e-05 GGGTGGAGGC CAGGGCAGGCA GGAGGGAGGC chr1:39449099-39449934 428 5.69e-05 ACAGAGCAGA CAGAGAAGCAA CTGAGCCAGG chr9:44078766-44079440 491 6.32e-05 TCCTCTCCCC AAGAAGAGCCA CGGGTTGGCC chr13:41545980-41546746 316 6.32e-05 AGGGTATTAA CTGTGAAGCCA ACAGTGGATT chr6:108668244-108668981 78 7.09e-05 CAGTTGGGGA CAAAGAAGCCT CTGTTTAAAA chr6:108668244-108668804 78 7.09e-05 CAGTTGGGGA CAAAGAAGCCT CTGTTTAAAA chr13:48227498-48228346 600 7.09e-05 CCCTGGCTTC CTGCAGGGCCA CGAGCTGGGG chr12:27390261-27391004 394 7.09e-05 CTCTGGTGTC CTGCAGGGCCA GGGTGGCCTC chr9:57831107-57831838 208 7.91e-05 GAGCACTGAG CTGTGCAGCCA CGGGGCAGCT chr13:99323556-99324231 618 7.91e-05 GTTTGTCATT CAAAAGAGCAA GCCAAGCCTC chr15:66883318-66884276 873 8.74e-05 TGTCATAAAA CACCAGAGCCA CAAGCCACTT chrX:93288108-93288864 636 9.81e-05 CCACCACCAG CTGCACGGCCA GGGGAGCGTC chr15:66877758-66878823 959 9.81e-05 AGGGGCCAAG CAGAGAGGGCA ATCCAGGCTC chr10:81072192-81072934 592 9.81e-05 CTTACACTTC CAGGAGGGCCT TTGCCAAAGC chr15:34795064-34795760 456 1.19e-04 AAGAGAGAAG GAAGAAAGCCA GGCCCAGAGG chr13:99210768-99211374 276 1.19e-04 ATTCAAACAA CTGGGCAGGCA GTGGGTTTGG chr11:59307629-59308768 1114 1.33e-04 CTCTCTGTTG CAGAGGACCCA TTAAGGAAAG chr8:111710934-111711702 602 1.62e-04 TGGGAGTGCA CAGGAAAGACA GCATCACCAG chr15:56692195-56692841 215 1.62e-04 AATGCAATCC CAGCCCAGCCA CGTGGGTTGA chr8:34679746-34680516 402 1.77e-04 CTCCACAGAG CAGATGGGCCA GCCCTCAGGG chr3:88150177-88151021 493 1.77e-04 CAGCTGTCTT CAGTGCAGCCT GCCTTCCCGA chr3:99254691-99255387 100 1.77e-04 TTCAACAGTG CAAAACAGCCC GGGGGAACAG chr13:62855904-62856806 76 1.77e-04 AAAAAAAAAA AAAAAAAGCCA TTTGCCCTCT chr4:74251643-74252226 534 1.95e-04 CTCCGCGGTG CAAAGCAGTCA GCTGGGAGGG chr15:58986361-58987006 563 1.95e-04 CAGCCAATTA CAAAAGACCCA CAATCCAATT chr10:80940445-80941162 139 1.95e-04 AAGCTCTGTG CAGGGCAGCCC CCTCTCCTAC chr11:67081014-67081680 53 2.14e-04 TGAGAAGCGG CAAGAGAGCCC ACGGCCCAAG chr8:126583914-126584586 228 2.34e-04 CCCCCCTCGC CAGACAAGCCT TTGACTTTAT chr12:17746987-17747690 164 2.34e-04 GCTTGCACAC CAGAGAGGTCA CTATGGCCAG chr2:160872202-160873163 87 2.56e-04 AAACCCCAAA CTGGAGAGGCT TCCCAGGTCC chr10:45311444-45312243 626 2.56e-04 GCATGCCCTC CAGACCAGGCA TTTTTAAGCA chr4:43038998-43039732 402 2.79e-04 AACATGCCGA GAGCAAGGCCA GCAAAAACAA chr3:145654797-145655492 393 2.79e-04 GGGACAAAGG CAGTAGGGCCT TGGCCAAGTA chr2:114087212-114087846 351 2.79e-04 TGAGTCAGCA CTGGGCAGTCA TTCATCCTTT chr1:36469598-36470779 802 2.79e-04 ACAACTATTA CTACACAGGCA AAGACTATTC chr13:37130560-37131151 125 2.79e-04 CAGCTCAGTT CACTGAAGCCA ACTGACTTGG chr19:56939731-56940324 77 3.06e-04 CTAGATGACC CAAGGCAGTCA TGCAAACTTC chr13:113262600-11326331 613 3.06e-04 CTAGGTGTAA CAGGATAGTCA CCCCATCATT chr1:91413901-91414660 334 3.33e-04 AGAAAAGCGG CAGGCCGGCCA GGAGCGACAG chr11:75538249-75538877 134 3.33e-04 GATTTTGTTT GTGAGGGGCCA ACAGTACAGG chr7:63956821-63957364 393 3.60e-04 TGCCAGATCA CAACAAAGCCC GGGAGAGCCG chr1:91407699-91408223 430 3.60e-04 AGAGCCAGGC CAGAAGACCCT GGTGGGGAGG chr2:26502150-26502692 311 3.91e-04 GCCCGGGAAT CAGAGCGGCCC ATTGTCGCGC chr3:37128117-37128837 102 4.25e-04 CTTTTCCACA CAGTGGGGCCT TTGATGTCCT chr12:52671351-52671937 515 4.25e-04 TCTTAGCTAT CACCATAGCCA ATGGCTTTAT chr10:80930116-80930840 251 4.25e-04 GAAGTGAGTA CAACAGAGGCT GAGGTCTTCT chr1:132370626-132371282 355 5.82e-04 TGTCTAGCCT CAGCTTAGCCA CACAGAGCTA chr11:90275464-90276273 334 5.82e-04 CTACAGATGG CTGAGCAGGAA TTTCCTCTTG chr14:46950823-46951599 400 6.28e-04 TGGGACTTTA CCAGAGAGCCA CAGCACACAC chr11:67074879-67075569 552 6.75e-04 AATTCCACGG CTAAAGAGCAT CCAGTTTGCC chr10:93642725-93643326 191 6.75e-04 CAACCACCAC CACGGGAGCAA TCAAGAGGTT chr15:77888063-77888703 483 9.00e-04 GCCTCATTGT CTGAAAGGGAA GCTCACTATA chr8:122636472-122637392 634 9.62e-04 TGACCCGGCT GTGGTGAGCCA GACACTGTCA chr3:88138276-88138625 332 9.62e-04 CCTAGGCTGG GAATAGAGGCA AGAAAAT chr2:69673558-69674376 434 1.52e-03 ACTGTGACCC CTGCATAGACA CCCTGTCTTT chr1:170655330-170656359 857 1.62e-03 GCTTCTATGA CTGTAAGGGCT ATTCAGCATC chr15:85698553-85699119 230 1.93e-03 CTTAGGAATT AACAGAGGCCA CCACACCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:61062370-61063082 4.8e-07 26_[+6]_675 chr11:98671678-98672393 4.8e-07 49_[+6]_655 chr19:42016673-42017472 7.3e-07 187_[+6]_601 chr9:94670098-94670696 1.3e-06 490_[+6]_97 chr9:21751868-21752893 3.9e-06 876_[+6]_138 chr15:66891763-66893113 3.9e-06 1153_[+6]_186 chr4:135765567-135766186 6.5e-06 362_[+6]_246 chr2:26484919-26485755 6.5e-06 51_[+6]_774 chr16:33940969-33942007 6.5e-06 528_[+6]_499 chr11:54331278-54332036 6.5e-06 676_[+6]_71 chr15:97811911-97812695 1.1e-05 495_[+6]_278 chr15:66885900-66886633 1.2e-05 344_[+6]_378 chr4:141423232-141423917 1.4e-05 303_[+6]_371 chr1:177441252-177442123 1.4e-05 422_[+6]_438 chr11:61038023-61038954 1.4e-05 244_[+6]_676 chr7:45460723-45461396 1.6e-05 183_[+6]_479 chr12:112617839-11261859 1.6e-05 381_[+6]_362 chr1:91956233-91956817 1.8e-05 161_[+6]_412 chr5:125110919-125111688 2.1e-05 494_[+6]_264 chr15:25915728-25916468 2.1e-05 213_[+6]_516 chr8:118249154-118249839 2.4e-05 628_[+6]_46 chr5:125056732-125057346 2.7e-05 247_[+6]_356 chr3:87982114-87984371 2.7e-05 350_[+6]_1896 chr2:26487449-26488199 2.7e-05 682_[+6]_57 chr15:68194220-68194869 2.7e-05 618_[+6]_20 chr13:81690312-81691137 2.7e-05 316_[+6]_498 chr8:120265441-120266019 3.1e-05 112_[+6]_455 chr6:72383040-72383702 3.1e-05 461_[+6]_190 chr11:95533718-95534393 3.4e-05 551_[+6]_113 chr1:92787053-92787745 4e-05 319_[+6]_362 chr15:75757872-75758579 4e-05 231_[+6]_465 chr7:46370884-46371930 4.5e-05 586_[+6]_449 chr15:28133135-28133948 4.5e-05 272_[+6]_530 chr11:6481396-6482367 4.5e-05 754_[+6]_206 chr11:59311790-59312990 4.5e-05 977_[+6]_212 chr1:87203702-87204348 5e-05 242_[+6]_393 chr16:30063016-30064679 5e-05 412_[+6]_1240 chr1:39449099-39449934 5.7e-05 427_[+6]_397 chr9:44078766-44079440 6.3e-05 490_[+6]_173 chr13:41545980-41546746 6.3e-05 315_[+6]_440 chr6:108668244-108668981 7.1e-05 77_[+6]_649 chr6:108668244-108668804 7.1e-05 77_[+6]_472 chr13:48227498-48228346 7.1e-05 599_[+6]_238 chr12:27390261-27391004 7.1e-05 393_[+6]_339 chr9:57831107-57831838 7.9e-05 207_[+6]_513 chr13:99323556-99324231 7.9e-05 617_[+6]_47 chr15:66883318-66884276 8.7e-05 872_[+6]_75 chrX:93288108-93288864 9.8e-05 635_[+6]_110 chr15:66877758-66878823 9.8e-05 958_[+6]_96 chr10:81072192-81072934 9.8e-05 591_[+6]_140 chr15:34795064-34795760 0.00012 455_[+6]_230 chr13:99210768-99211374 0.00012 275_[+6]_320 chr11:59307629-59308768 0.00013 1113_[+6]_15 chr8:111710934-111711702 0.00016 601_[+6]_156 chr15:56692195-56692841 0.00016 214_[+6]_421 chr8:34679746-34680516 0.00018 401_[+6]_358 chr3:88150177-88151021 0.00018 492_[+6]_341 chr3:99254691-99255387 0.00018 99_[+6]_586 chr13:62855904-62856806 0.00018 75_[+6]_816 chr4:74251643-74252226 0.00019 533_[+6]_39 chr15:58986361-58987006 0.00019 562_[+6]_72 chr10:80940445-80941162 0.00019 138_[+6]_568 chr11:67081014-67081680 0.00021 52_[+6]_603 chr8:126583914-126584586 0.00023 227_[+6]_434 chr12:17746987-17747690 0.00023 163_[+6]_529 chr2:160872202-160873163 0.00026 86_[+6]_864 chr10:45311444-45312243 0.00026 625_[+6]_163 chr4:43038998-43039732 0.00028 401_[+6]_322 chr3:145654797-145655492 0.00028 392_[+6]_292 chr2:114087212-114087846 0.00028 350_[+6]_273 chr1:36469598-36470779 0.00028 801_[+6]_369 chr13:37130560-37131151 0.00028 124_[+6]_456 chr19:56939731-56940324 0.00031 76_[+6]_506 chr13:113262600-11326331 0.00031 612_[+6]_94 chr1:91413901-91414660 0.00033 333_[+6]_415 chr11:75538249-75538877 0.00033 133_[+6]_484 chr7:63956821-63957364 0.00036 392_[+6]_140 chr1:91407699-91408223 0.00036 429_[+6]_84 chr2:26502150-26502692 0.00039 310_[+6]_221 chr3:37128117-37128837 0.00042 101_[+6]_608 chr12:52671351-52671937 0.00042 514_[+6]_61 chr10:80930116-80930840 0.00042 250_[+6]_463 chr1:132370626-132371282 0.00058 354_[+6]_291 chr11:90275464-90276273 0.00058 333_[+6]_465 chr14:46950823-46951599 0.00063 399_[+6]_366 chr11:67074879-67075569 0.00067 551_[+6]_128 chr10:93642725-93643326 0.00067 190_[+6]_400 chr15:77888063-77888703 0.0009 482_[+6]_147 chr8:122636472-122637392 0.00096 633_[+6]_276 chr3:88138276-88138625 0.00096 331_[+6]_7 chr2:69673558-69674376 0.0015 433_[+6]_374 chr1:170655330-170656359 0.0016 856_[+6]_162 chr15:85698553-85699119 0.0019 229_[+6]_326 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=11 seqs=93 chr11:61062370-61063082 ( 27) CAGAAAAGCCA 1 chr11:98671678-98672393 ( 50) CAGAAAAGCCA 1 chr19:42016673-42017472 ( 188) CAGAACAGCCA 1 chr9:94670098-94670696 ( 491) CAGAGGAGCCA 1 chr9:21751868-21752893 ( 877) CAGCAGAGCCA 1 chr15:66891763-66893113 ( 1154) CAGGGGAGCCA 1 chr4:135765567-135766186 ( 363) CTGGAGAGCCA 1 chr2:26484919-26485755 ( 52) CAGGGCAGCCA 1 chr16:33940969-33942007 ( 529) CTGAGGAGCCA 1 chr11:54331278-54332036 ( 677) CAGCACAGCCA 1 chr15:97811911-97812695 ( 496) CTGAGCAGCCA 1 chr15:66885900-66886633 ( 345) CAAAGCAGCCA 1 chr4:141423232-141423917 ( 304) CTGGGGAGCCA 1 chr1:177441252-177442123 ( 423) CAGGAGGGCCA 1 chr11:61038023-61038954 ( 245) CAGGAGGGCCA 1 chr7:45460723-45461396 ( 184) CAAGGGAGCCA 1 chr12:112617839-11261859 ( 382) CTGCAAAGCCA 1 chr1:91956233-91956817 ( 162) CAACAAAGCCA 1 chr5:125110919-125111688 ( 495) CTGGGCAGCCA 1 chr15:25915728-25916468 ( 214) GAGAAGAGCCA 1 chr8:118249154-118249839 ( 629) GAGAAAAGCCA 1 chr5:125056732-125057346 ( 248) CACAAGAGCCA 1 chr3:87982114-87984371 ( 351) CAGGACAGGCA 1 chr2:26487449-26488199 ( 683) CAGCAGGGCCA 1 chr15:68194220-68194869 ( 619) CTGAAGAGGCA 1 chr13:81690312-81691137 ( 317) CTAAGAAGCCA 1 chr8:120265441-120266019 ( 113) GAGAACAGCCA 1 chr6:72383040-72383702 ( 462) CAGAAAAGCAA 1 chr11:95533718-95534393 ( 552) CTGAAAAGCCT 1 chr1:92787053-92787745 ( 320) CAAAATAGCCA 1 chr15:75757872-75758579 ( 232) CAGGGAAGGCA 1 chr7:46370884-46371930 ( 587) CAAAGGGGCCA 1 chr15:28133135-28133948 ( 273) CTAGGGAGCCA 1 chr11:6481396-6482367 ( 755) GAGGAAAGCCA 1 chr11:59311790-59312990 ( 978) CAGGGAAGCCT 1 chr1:87203702-87204348 ( 243) CTGAGGAGGCA 1 chr16:30063016-30064679 ( 413) CAGGGCAGGCA 1 chr1:39449099-39449934 ( 428) CAGAGAAGCAA 1 chr9:44078766-44079440 ( 491) AAGAAGAGCCA 1 chr13:41545980-41546746 ( 316) CTGTGAAGCCA 1 chr6:108668244-108668981 ( 78) CAAAGAAGCCT 1 chr6:108668244-108668804 ( 78) CAAAGAAGCCT 1 chr13:48227498-48228346 ( 600) CTGCAGGGCCA 1 chr12:27390261-27391004 ( 394) CTGCAGGGCCA 1 chr9:57831107-57831838 ( 208) CTGTGCAGCCA 1 chr13:99323556-99324231 ( 618) CAAAAGAGCAA 1 chr15:66883318-66884276 ( 873) CACCAGAGCCA 1 chrX:93288108-93288864 ( 636) CTGCACGGCCA 1 chr15:66877758-66878823 ( 959) CAGAGAGGGCA 1 chr10:81072192-81072934 ( 592) CAGGAGGGCCT 1 chr15:34795064-34795760 ( 456) GAAGAAAGCCA 1 chr13:99210768-99211374 ( 276) CTGGGCAGGCA 1 chr11:59307629-59308768 ( 1114) CAGAGGACCCA 1 chr8:111710934-111711702 ( 602) CAGGAAAGACA 1 chr15:56692195-56692841 ( 215) CAGCCCAGCCA 1 chr8:34679746-34680516 ( 402) CAGATGGGCCA 1 chr3:88150177-88151021 ( 493) CAGTGCAGCCT 1 chr3:99254691-99255387 ( 100) CAAAACAGCCC 1 chr13:62855904-62856806 ( 76) AAAAAAAGCCA 1 chr4:74251643-74252226 ( 534) CAAAGCAGTCA 1 chr15:58986361-58987006 ( 563) CAAAAGACCCA 1 chr10:80940445-80941162 ( 139) CAGGGCAGCCC 1 chr11:67081014-67081680 ( 53) CAAGAGAGCCC 1 chr8:126583914-126584586 ( 228) CAGACAAGCCT 1 chr12:17746987-17747690 ( 164) CAGAGAGGTCA 1 chr2:160872202-160873163 ( 87) CTGGAGAGGCT 1 chr10:45311444-45312243 ( 626) CAGACCAGGCA 1 chr4:43038998-43039732 ( 402) GAGCAAGGCCA 1 chr3:145654797-145655492 ( 393) CAGTAGGGCCT 1 chr2:114087212-114087846 ( 351) CTGGGCAGTCA 1 chr1:36469598-36470779 ( 802) CTACACAGGCA 1 chr13:37130560-37131151 ( 125) CACTGAAGCCA 1 chr19:56939731-56940324 ( 77) CAAGGCAGTCA 1 chr13:113262600-11326331 ( 613) CAGGATAGTCA 1 chr1:91413901-91414660 ( 334) CAGGCCGGCCA 1 chr11:75538249-75538877 ( 134) GTGAGGGGCCA 1 chr7:63956821-63957364 ( 393) CAACAAAGCCC 1 chr1:91407699-91408223 ( 430) CAGAAGACCCT 1 chr2:26502150-26502692 ( 311) CAGAGCGGCCC 1 chr3:37128117-37128837 ( 102) CAGTGGGGCCT 1 chr12:52671351-52671937 ( 515) CACCATAGCCA 1 chr10:80930116-80930840 ( 251) CAACAGAGGCT 1 chr1:132370626-132371282 ( 355) CAGCTTAGCCA 1 chr11:90275464-90276273 ( 334) CTGAGCAGGAA 1 chr14:46950823-46951599 ( 400) CCAGAGAGCCA 1 chr11:67074879-67075569 ( 552) CTAAAGAGCAT 1 chr10:93642725-93643326 ( 191) CACGGGAGCAA 1 chr15:77888063-77888703 ( 483) CTGAAAGGGAA 1 chr8:122636472-122637392 ( 634) GTGGTGAGCCA 1 chr3:88138276-88138625 ( 332) GAATAGAGGCA 1 chr2:69673558-69674376 ( 434) CTGCATAGACA 1 chr1:170655330-170656359 ( 857) CTGTAAGGGCT 1 chr15:85698553-85699119 ( 230) AACAGAGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 71405 bayes= 9.5827 E= 6.3e-006 -285 172 -150 -1318 159 -461 -1318 34 9 -203 133 -1318 88 -53 14 -142 118 -262 54 -283 32 -3 54 -210 175 -1318 -34 -1318 -1318 -303 183 -1318 -344 153 -76 -210 -163 181 -1318 -1318 177 -230 -1318 -61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 93 E= 6.3e-006 0.032258 0.870968 0.096774 0.000000 0.698925 0.010753 0.000000 0.290323 0.247312 0.064516 0.688172 0.000000 0.430108 0.182796 0.301075 0.086022 0.526882 0.043011 0.397849 0.032258 0.290323 0.258065 0.397849 0.053763 0.784946 0.000000 0.215054 0.000000 0.000000 0.032258 0.967742 0.000000 0.021505 0.763441 0.161290 0.053763 0.075269 0.924731 0.000000 0.000000 0.795699 0.053763 0.000000 0.150538 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- C[AT][GA][AG][AG][GAC][AG]GCCA -------------------------------------------------------------------------------- Time 924.06 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 15 sites = 23 llr = 286 E-value = 1.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A 21:::2::4:2:::8 pos.-specific C 5666a7aa19899a1 probability G :3:::1::2:::::: matrix T 3:44::::21::1:: bits 2.1 1.9 * * * 1.7 * ** * 1.5 * ** * * Relative 1.3 * ** ****** Entropy 1.1 ** ** ****** (18.0 bits) 0.8 ****** ****** 0.6 ******** ****** 0.4 ******** ****** 0.2 *************** 0.0 --------------- Multilevel CCCCCCCCACCCCCA consensus TGTT G sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr12:17746987-17747690 549 4.51e-09 AATCTGCAAG CCTCCCCCACCCCCA CTCGAGGAGA chr8:126583914-126584586 26 1.64e-08 TAACCCCCCT CGCCCCCCACCCCCA CCCTCACCCC chr16:33940969-33942007 899 2.91e-08 TGGCCAAGGG TCTTCCCCACCCCCA AGGGTCTCCA chr9:44078766-44079440 600 5.70e-08 CTTCTCCCCC CCTCCCCCCCCCCCA CGTCCGACCT chr15:97811911-97812695 596 1.60e-07 AGAGGGGGGA ACTCCCCCCCCCCCA GAGGCCTTCC chr5:125110919-125111688 427 2.03e-07 AGTCTGCGGC TGCTCCCCGCCCCCA CACAGCTGCA chr8:120265441-120266019 85 3.75e-07 CCCCAGAGGC CCCTCCCCCCACCCA GCAAGGCTCA chr3:87982114-87984371 198 4.15e-07 CACCGCCCTG TCCCCCCCTCCCCCC CAGTTCTGCT chr2:160872202-160873163 854 5.01e-07 GGCTCGACCC CACCCCCCACCCCCC GCCCGGGTCG chr10:80930116-80930840 694 5.46e-07 CTATGTGCTT CCTCCCCCACCGCCA TCAGTATTTG chr3:88150177-88151021 409 8.80e-07 GATTGGATTG TCGCCCCCTCCCCCA GCGCATGCTG chr1:92787053-92787745 149 9.65e-07 TGCCAGGCAC AGCTCCCCACCCTCA GGCAGGACCA chr1:91413901-91414660 189 9.65e-07 GTCCCCTTAG AGTCCCCCATCCCCA CTACCCCCAG chr13:62855904-62856806 584 9.65e-07 AGCCCCTGTC TCCTCCCCACCCCCG TGGCTGCTCT chr1:177441252-177442123 551 1.14e-06 CGGACTCGCT CGCTCCACACCCCCA GAGCGCGCTT chr2:26502150-26502692 426 1.61e-06 CCAGGGGCAG CCCCCGCCGCACCCA GGGAGGGGGT chr15:66883318-66884276 362 1.61e-06 AGCTGCCTGA CATCCCCCAACCCCA CTATGCACTC chr2:26484919-26485755 556 2.02e-06 TAGGGCAGTC AGCTCCCCGCCCTCA TCTCTCATGG chr5:125056732-125057346 115 2.18e-06 GAAGGTTTCT CACCCACCTCACCCA GCTCAGGAGT chr19:42016673-42017472 96 2.34e-06 CCCTTTAGTT TCCTCACCTTCCCCA GCTCAGCTAG chrX:93288108-93288864 617 3.36e-06 TGGAGAGGTT CCTCCACCGCCACCA CCAGCTGCAC chr3:37128117-37128837 550 4.70e-06 ACTACTGAGA ACTCCACCTCCCACA AGAGTTTCTT chr15:77888063-77888703 529 8.22e-06 GCTGTGCACC CCCTCGCCGCACCCC TGTCAGCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:17746987-17747690 4.5e-09 548_[+7]_140 chr8:126583914-126584586 1.6e-08 25_[+7]_632 chr16:33940969-33942007 2.9e-08 898_[+7]_125 chr9:44078766-44079440 5.7e-08 599_[+7]_60 chr15:97811911-97812695 1.6e-07 595_[+7]_174 chr5:125110919-125111688 2e-07 426_[+7]_328 chr8:120265441-120266019 3.7e-07 84_[+7]_479 chr3:87982114-87984371 4.1e-07 197_[+7]_2045 chr2:160872202-160873163 5e-07 853_[+7]_93 chr10:80930116-80930840 5.5e-07 693_[+7]_16 chr3:88150177-88151021 8.8e-07 408_[+7]_421 chr1:92787053-92787745 9.7e-07 148_[+7]_529 chr1:91413901-91414660 9.7e-07 188_[+7]_556 chr13:62855904-62856806 9.7e-07 583_[+7]_304 chr1:177441252-177442123 1.1e-06 550_[+7]_306 chr2:26502150-26502692 1.6e-06 425_[+7]_102 chr15:66883318-66884276 1.6e-06 361_[+7]_582 chr2:26484919-26485755 2e-06 555_[+7]_266 chr5:125056732-125057346 2.2e-06 114_[+7]_485 chr19:42016673-42017472 2.3e-06 95_[+7]_689 chrX:93288108-93288864 3.4e-06 616_[+7]_125 chr3:37128117-37128837 4.7e-06 549_[+7]_156 chr15:77888063-77888703 8.2e-06 528_[+7]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=15 seqs=23 chr12:17746987-17747690 ( 549) CCTCCCCCACCCCCA 1 chr8:126583914-126584586 ( 26) CGCCCCCCACCCCCA 1 chr16:33940969-33942007 ( 899) TCTTCCCCACCCCCA 1 chr9:44078766-44079440 ( 600) CCTCCCCCCCCCCCA 1 chr15:97811911-97812695 ( 596) ACTCCCCCCCCCCCA 1 chr5:125110919-125111688 ( 427) TGCTCCCCGCCCCCA 1 chr8:120265441-120266019 ( 85) CCCTCCCCCCACCCA 1 chr3:87982114-87984371 ( 198) TCCCCCCCTCCCCCC 1 chr2:160872202-160873163 ( 854) CACCCCCCACCCCCC 1 chr10:80930116-80930840 ( 694) CCTCCCCCACCGCCA 1 chr3:88150177-88151021 ( 409) TCGCCCCCTCCCCCA 1 chr1:92787053-92787745 ( 149) AGCTCCCCACCCTCA 1 chr1:91413901-91414660 ( 189) AGTCCCCCATCCCCA 1 chr13:62855904-62856806 ( 584) TCCTCCCCACCCCCG 1 chr1:177441252-177442123 ( 551) CGCTCCACACCCCCA 1 chr2:26502150-26502692 ( 426) CCCCCGCCGCACCCA 1 chr15:66883318-66884276 ( 362) CATCCCCCAACCCCA 1 chr2:26484919-26485755 ( 556) AGCTCCCCGCCCTCA 1 chr5:125056732-125057346 ( 115) CACCCACCTCACCCA 1 chr19:42016673-42017472 ( 96) TCCTCACCTTCCCCA 1 chrX:93288108-93288864 ( 617) CCTCCACCGCCACCA 1 chr3:37128117-37128837 ( 550) ACTCCACCTCCCACA 1 chr15:77888063-77888703 ( 529) CCCTCGCCGCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 71033 bayes= 12.6565 E= 1.9e-004 -10 98 -1117 18 -84 120 -7 -1117 -1117 110 -265 77 -1117 120 -1117 77 -1117 192 -1117 -1117 -42 148 -165 -1117 -242 186 -1117 -1117 -1117 192 -1117 -1117 90 -102 -33 -8 -242 172 -1117 -140 -42 164 -1117 -1117 -242 179 -265 -1117 -242 172 -1117 -140 -1117 192 -1117 -1117 183 -102 -265 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 23 E= 1.9e-004 0.217391 0.521739 0.000000 0.260870 0.130435 0.608696 0.260870 0.000000 0.000000 0.565217 0.043478 0.391304 0.000000 0.608696 0.000000 0.391304 0.000000 1.000000 0.000000 0.000000 0.173913 0.739130 0.086957 0.000000 0.043478 0.956522 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.434783 0.130435 0.217391 0.217391 0.043478 0.869565 0.000000 0.086957 0.173913 0.826087 0.000000 0.000000 0.043478 0.913043 0.043478 0.000000 0.043478 0.869565 0.000000 0.086957 0.000000 1.000000 0.000000 0.000000 0.826087 0.130435 0.043478 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- [CTA][CG][CT][CT]CCCC[AGT]CCCCCA -------------------------------------------------------------------------------- Time 1067.28 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 25 sites = 6 llr = 149 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A 2:2:2:3:2:2:5:7:5:5:7:7:5 pos.-specific C :::::::::::::::::::2::::: probability G :a:a:a:a282a:a:8:a:8:a:a: matrix T 8:8:8:7:727:5:325:5:3:3:5 bits 2.1 1.9 * * * * * * * * * 1.7 * * * * * * * * * 1.5 ****** * * * * * * Relative 1.3 ******** * * *** * ***** Entropy 1.1 ******** * ************** (35.9 bits) 0.8 ************************* 0.6 ************************* 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel TGTGTGTGTGTGAGAGAGAGAGAGA consensus A T T T T T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr6:108668244-108668981 104 1.47e-14 TAAAAGGGGG TGTGTGTGTGTGAGAGAGAGAGAGA GCCAGCCACG chr6:108668244-108668804 104 1.47e-14 TAAAAGGGGG TGTGTGTGTGTGAGAGAGAGAGAGA GCCAGCCACG chr1:36469598-36470779 180 4.86e-13 GGCCTCACTC TGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT chr1:91413901-91414660 484 4.86e-13 GCGGGAGGGG TGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT chr7:46370884-46371930 865 7.62e-11 GTTTGAGATA AGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGG chr10:93642725-93643326 469 7.62e-11 GCTGCAAGGC TGTGTGAGGTGGTGATTGTCAGAGT GTGAAATCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:108668244-108668981 1.5e-14 103_[+8]_609 chr6:108668244-108668804 1.5e-14 103_[+8]_432 chr1:36469598-36470779 4.9e-13 179_[+8]_977 chr1:91413901-91414660 4.9e-13 483_[+8]_251 chr7:46370884-46371930 7.6e-11 864_[+8]_157 chr10:93642725-93643326 7.6e-11 468_[+8]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=25 seqs=6 chr6:108668244-108668981 ( 104) TGTGTGTGTGTGAGAGAGAGAGAGA 1 chr6:108668244-108668804 ( 104) TGTGTGTGTGTGAGAGAGAGAGAGA 1 chr1:36469598-36470779 ( 180) TGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:91413901-91414660 ( 484) TGTGTGTGTGTGTGTGTGTGTGTGT 1 chr7:46370884-46371930 ( 865) AGAGAGAGAGAGAGAGAGAGAGAGA 1 chr10:93642725-93643326 ( 469) TGTGTGAGGTGGTGATTGTCAGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 70103 bayes= 14.6117 E= 1.5e+000 -48 -923 -923 186 -923 -923 187 -923 -48 -923 -923 186 -923 -923 187 -923 -48 -923 -923 186 -923 -923 187 -923 52 -923 -923 153 -923 -923 187 -923 -48 -923 -71 153 -923 -923 161 -46 -48 -923 -71 153 -923 -923 187 -923 110 -923 -923 112 -923 -923 187 -923 152 -923 -923 53 -923 -923 161 -46 110 -923 -923 112 -923 -923 187 -923 110 -923 -923 112 -923 -66 161 -923 152 -923 -923 53 -923 -923 187 -923 152 -923 -923 53 -923 -923 187 -923 110 -923 -923 112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 6 E= 1.5e+000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.166667 0.666667 0.000000 0.000000 0.833333 0.166667 0.166667 0.000000 0.166667 0.666667 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.833333 0.166667 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.166667 0.833333 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- TGTGTG[TA]GTGTG[AT]G[AT]G[AT]G[AT]G[AT]G[AT]G[AT] -------------------------------------------------------------------------------- Time 1209.92 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 15 sites = 60 llr = 547 E-value = 2.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A 53:::5:33341321 pos.-specific C ::77a:::27165:3 probability G 373:::a76::2:37 matrix T 3::3:5::::5125: bits 2.1 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 **** * * (13.2 bits) 0.8 ******* * 0.6 *********** * 0.4 *********** *** 0.2 *************** 0.0 --------------- Multilevel AGCCCTGGGCTCCTG consensus GAGT A AAAAGAGC sequence T TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr11:67074879-67075569 414 1.40e-08 GGATAAATGA AGCCCTGGGCTCCGG CTGTGGGGAT chr4:141423232-141423917 469 1.80e-08 CCCTCTGCAC AGCCCTGGGATCCTG GGCACCCCAA chr15:85698553-85699119 397 2.43e-07 GTCACAGCCC TGCCCTGGACTCATG TGGACAGTCC chr15:66885900-66886633 443 6.43e-07 AGTATTTCAG AGCCCAGAGCTCAGG AGCCCCAGCA chr16:33940969-33942007 961 7.98e-07 TCCCTTCTGC TGCTCAGGGCACATG AGGCTCATGC chr11:67081014-67081680 567 1.79e-06 TGTGGGCACT AGCCCAGGGCTACAG TGCCTCTCTC chr10:81072192-81072934 727 2.15e-06 TCACAGGATA AACTCTGGGATCATG G chr6:108668244-108668981 178 3.06e-06 AGGAGCTCAG AGGCCTGGGATCTGG CGGCCTTCAG chr6:108668244-108668804 178 3.06e-06 AGGAGCTCAG AGGCCTGGGATCTGG CGGCCTTCAG chr5:125110919-125111688 107 3.62e-06 TCATCTAGAT AGCCCTGGGCTCCAA TCCCAGCCCC chr15:66883318-66884276 1 3.62e-06 . AGCTCTGGAATCTGG ATGTGAAGCT chr3:88138276-88138625 85 4.26e-06 TCCAGTAACA GGCCCTGAGCTACTG GCCCTTTAAG chr15:56692195-56692841 107 5.81e-06 TAAGTGTATA AACTCTGGACTCTGG CTGGGGAGGG chr3:87982114-87984371 1469 6.73e-06 GAGCCCACCC AGCCCAGAAAACCAG AGAAGACTCT chr11:61038023-61038954 334 6.73e-06 CCAGCTCCAC TGGCCTGGGCTCCGC AGGGAAGGCT chr1:177441252-177442123 453 7.79e-06 GCCCCAGGCT GGCCCTGGCCAGCTG CGGCCCCGCG chr3:145654797-145655492 245 1.17e-05 GGTGACATAA AACCCAGGACTTTTG ACACTGAATT chr1:91413901-91414660 641 1.17e-05 CTCCATCCTT AGGCCTGGACACCAC TAAGCACTTC chr11:59307629-59308768 847 1.17e-05 CTGGCCTTGT GGCCCTGGGATTCAG AACCTACAGG chr15:28133135-28133948 340 1.33e-05 GAACTGAGAA AACCCAGGACTGTGG GTAACCTAGT chr13:99210768-99211374 481 1.33e-05 ACCTTTATCA AGGCCAGAGCATCTG GATGATTTTA chr3:88150177-88151021 712 1.50e-05 CAGGACACAG TGCTCAGGGCAGAAG GGAGTGAGGG chr9:44078766-44079440 508 1.69e-05 GCCACGGGTT GGCCCAGGGCCCTTC CAAGCATAGT chr15:68194220-68194869 328 1.69e-05 CACTCAGACA GGCCCAGGCCATCTG TGCTTAAGGC chr8:34679746-34680516 256 1.90e-05 CTTAGAAAGG AGCCCTGACAACCTC CCTGCACCCG chr7:63956821-63957364 243 1.90e-05 ACACGGCGGG AACCCAGGACAACAG CGGGTTGGGA chr8:120265441-120266019 249 2.13e-05 AAAGGCAGGG AGGCCAGGGAAGTGG CCTTCTGGTC chr7:46370884-46371930 699 2.13e-05 ACAATGCCTC AGCCCAGAGCCAATG GCACGCTCCA chr15:97811911-97812695 235 2.13e-05 CCAGACATAG AGCCCAGAGCTCACG ATCAGCCCTA chr12:52671351-52671937 33 2.13e-05 GGGGAACGTT GACTCTGAGCTCTGG GGAGGGCTGC chr15:66877758-66878823 822 2.37e-05 TGTGCTTTGA AGCTCTGGGCCAAGG CTAGAGGGAA chr10:45311444-45312243 15 2.37e-05 AGATAAGCAC AACTCTGGGCTAATC TTCATCAGCG chr5:125056732-125057346 218 2.64e-05 AGGTGCGGGA TAGCCAGGCCACCTG CTGGCCTACA chr11:59311790-59312990 743 2.64e-05 CTCCCGGGGA GGCCCTGAACCCCAG AGGGTGATGA chr3:37128117-37128837 493 2.93e-05 CTAGAGATGC TGCCCGGGGAACCTG TCACCTGTTG chr2:26484919-26485755 214 2.93e-05 AGGGTCCTTG GGCCCAGGCCTAAGG GTCCCAACCG chr19:42016673-42017472 567 3.57e-05 ATGGTCACAC TGGTCAGGCCTCAGG CTGAGTGGAG chr15:77888063-77888703 600 3.57e-05 ACATAGGCCG AGCCCAGAACAGAGC TCCAGGTAGA chr1:91956233-91956817 79 4.30e-05 GAGTCTGAGT AACTCTGAGCACATA GTGTAGTCCT chr15:75757872-75758579 485 4.30e-05 TGTTGACTGG AGCTCAGTGCTCCTC AGCTCCACTC chr15:66891763-66893113 120 4.30e-05 ACCCTGGACT GGCCCTGTGATCTTG GGTGGGTCAC chr13:48227498-48228346 511 4.30e-05 CCGCCCGCCC GGGCCAGAACTCCGC TGGCTCCTCC chr2:160872202-160873163 344 4.71e-05 CGACCACCCA GACCCTGGACTCCCG GGCGTGGAGC chr13:62855904-62856806 558 5.13e-05 GCACTGGACA AGGCCAGGGTACCTG CAGCCCCTGT chr15:25915728-25916468 479 5.59e-05 GTTGCACCAT GGCTCTGGAAATCTC TTCGGATTTG chr11:75538249-75538877 266 5.59e-05 TAGCCCGGGC TGCTCTGACCACTTC ATGGTGGCAC chr8:122636472-122637392 723 6.07e-05 CTGTTGACCC TGCTCTGGGACCCTA TTGGCATTCT chr2:69673558-69674376 135 7.12e-05 AATGAATCCC TAGTCAGAGCACTGG CAGGTCCATC chr4:43038998-43039732 210 8.91e-05 GTTCCCTCCC TGCCCAGAGACGCTC GAAGACTCAC chr6:72383040-72383702 276 9.57e-05 AGGCAGACTG GGCTCTGGAAAGAAC CGCAGTGATG chr15:34795064-34795760 183 9.57e-05 CCCTATCTCT GAGCCTGGAAAGCAG TCTGACAGCT chr2:26487449-26488199 515 1.03e-04 GGGAAGCTGG TGGCCAGGGACGCTC CTCCGTGGGG chr8:111710934-111711702 25 1.10e-04 CTGTCCACCA TGTCCTGGGCAGCGG AAGGGGATGG chr12:27390261-27391004 679 1.17e-04 TTGGCTGTTC AAGTCTGGACTCAAA GGACCAGTCC chr10:80940445-80941162 189 1.25e-04 GGCACAAGTT GGCTCAGAAAAGTTC TTTGGGTAGC chr13:81690312-81691137 145 1.33e-04 AGCTGCTGAG TAGCCTGGCCTAAAG AGTGAGATCC chr12:112617839-11261859 595 1.42e-04 GAAGCCTCAG TGCCCAGGACCCGTC TAAGCCCCCA chr7:45460723-45461396 110 1.51e-04 CTAATCTCAG AAGCCTGGGAAGAGA GCAAAGGGAA chr1:36469598-36470779 505 1.51e-04 CCCAGGGGTC AACCCAGGCCTTGTG CTTAGTATAG chr10:80930116-80930840 510 1.70e-04 ATCCCTATAG GGCTCGGGGCTTTGG GGGACTTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:67074879-67075569 1.4e-08 413_[+9]_262 chr4:141423232-141423917 1.8e-08 468_[+9]_202 chr15:85698553-85699119 2.4e-07 396_[+9]_155 chr15:66885900-66886633 6.4e-07 442_[+9]_276 chr16:33940969-33942007 8e-07 960_[+9]_63 chr11:67081014-67081680 1.8e-06 566_[+9]_85 chr10:81072192-81072934 2.2e-06 726_[+9]_1 chr6:108668244-108668981 3.1e-06 177_[+9]_545 chr6:108668244-108668804 3.1e-06 177_[+9]_368 chr5:125110919-125111688 3.6e-06 106_[+9]_648 chr15:66883318-66884276 3.6e-06 [+9]_943 chr3:88138276-88138625 4.3e-06 84_[+9]_250 chr15:56692195-56692841 5.8e-06 106_[+9]_525 chr3:87982114-87984371 6.7e-06 1468_[+9]_774 chr11:61038023-61038954 6.7e-06 333_[+9]_583 chr1:177441252-177442123 7.8e-06 452_[+9]_404 chr3:145654797-145655492 1.2e-05 244_[+9]_436 chr1:91413901-91414660 1.2e-05 640_[+9]_104 chr11:59307629-59308768 1.2e-05 846_[+9]_278 chr15:28133135-28133948 1.3e-05 339_[+9]_459 chr13:99210768-99211374 1.3e-05 480_[+9]_111 chr3:88150177-88151021 1.5e-05 711_[+9]_118 chr9:44078766-44079440 1.7e-05 507_[+9]_152 chr15:68194220-68194869 1.7e-05 327_[+9]_307 chr8:34679746-34680516 1.9e-05 255_[+9]_500 chr7:63956821-63957364 1.9e-05 242_[+9]_286 chr8:120265441-120266019 2.1e-05 248_[+9]_315 chr7:46370884-46371930 2.1e-05 698_[+9]_333 chr15:97811911-97812695 2.1e-05 234_[+9]_535 chr12:52671351-52671937 2.1e-05 32_[+9]_539 chr15:66877758-66878823 2.4e-05 821_[+9]_229 chr10:45311444-45312243 2.4e-05 14_[+9]_770 chr5:125056732-125057346 2.6e-05 217_[+9]_382 chr11:59311790-59312990 2.6e-05 742_[+9]_443 chr3:37128117-37128837 2.9e-05 492_[+9]_213 chr2:26484919-26485755 2.9e-05 213_[+9]_608 chr19:42016673-42017472 3.6e-05 566_[+9]_218 chr15:77888063-77888703 3.6e-05 599_[+9]_26 chr1:91956233-91956817 4.3e-05 78_[+9]_491 chr15:75757872-75758579 4.3e-05 484_[+9]_208 chr15:66891763-66893113 4.3e-05 119_[+9]_1216 chr13:48227498-48228346 4.3e-05 510_[+9]_323 chr2:160872202-160873163 4.7e-05 343_[+9]_603 chr13:62855904-62856806 5.1e-05 557_[+9]_330 chr15:25915728-25916468 5.6e-05 478_[+9]_247 chr11:75538249-75538877 5.6e-05 265_[+9]_348 chr8:122636472-122637392 6.1e-05 722_[+9]_183 chr2:69673558-69674376 7.1e-05 134_[+9]_669 chr4:43038998-43039732 8.9e-05 209_[+9]_510 chr6:72383040-72383702 9.6e-05 275_[+9]_372 chr15:34795064-34795760 9.6e-05 182_[+9]_499 chr2:26487449-26488199 0.0001 514_[+9]_221 chr8:111710934-111711702 0.00011 24_[+9]_729 chr12:27390261-27391004 0.00012 678_[+9]_50 chr10:80940445-80941162 0.00013 188_[+9]_514 chr13:81690312-81691137 0.00013 144_[+9]_666 chr12:112617839-11261859 0.00014 594_[+9]_145 chr7:45460723-45461396 0.00015 109_[+9]_549 chr1:36469598-36470779 0.00015 504_[+9]_662 chr10:80930116-80930840 0.00017 509_[+9]_200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=15 seqs=60 chr11:67074879-67075569 ( 414) AGCCCTGGGCTCCGG 1 chr4:141423232-141423917 ( 469) AGCCCTGGGATCCTG 1 chr15:85698553-85699119 ( 397) TGCCCTGGACTCATG 1 chr15:66885900-66886633 ( 443) AGCCCAGAGCTCAGG 1 chr16:33940969-33942007 ( 961) TGCTCAGGGCACATG 1 chr11:67081014-67081680 ( 567) AGCCCAGGGCTACAG 1 chr10:81072192-81072934 ( 727) AACTCTGGGATCATG 1 chr6:108668244-108668981 ( 178) AGGCCTGGGATCTGG 1 chr6:108668244-108668804 ( 178) AGGCCTGGGATCTGG 1 chr5:125110919-125111688 ( 107) AGCCCTGGGCTCCAA 1 chr15:66883318-66884276 ( 1) AGCTCTGGAATCTGG 1 chr3:88138276-88138625 ( 85) GGCCCTGAGCTACTG 1 chr15:56692195-56692841 ( 107) AACTCTGGACTCTGG 1 chr3:87982114-87984371 ( 1469) AGCCCAGAAAACCAG 1 chr11:61038023-61038954 ( 334) TGGCCTGGGCTCCGC 1 chr1:177441252-177442123 ( 453) GGCCCTGGCCAGCTG 1 chr3:145654797-145655492 ( 245) AACCCAGGACTTTTG 1 chr1:91413901-91414660 ( 641) AGGCCTGGACACCAC 1 chr11:59307629-59308768 ( 847) GGCCCTGGGATTCAG 1 chr15:28133135-28133948 ( 340) AACCCAGGACTGTGG 1 chr13:99210768-99211374 ( 481) AGGCCAGAGCATCTG 1 chr3:88150177-88151021 ( 712) TGCTCAGGGCAGAAG 1 chr9:44078766-44079440 ( 508) GGCCCAGGGCCCTTC 1 chr15:68194220-68194869 ( 328) GGCCCAGGCCATCTG 1 chr8:34679746-34680516 ( 256) AGCCCTGACAACCTC 1 chr7:63956821-63957364 ( 243) AACCCAGGACAACAG 1 chr8:120265441-120266019 ( 249) AGGCCAGGGAAGTGG 1 chr7:46370884-46371930 ( 699) AGCCCAGAGCCAATG 1 chr15:97811911-97812695 ( 235) AGCCCAGAGCTCACG 1 chr12:52671351-52671937 ( 33) GACTCTGAGCTCTGG 1 chr15:66877758-66878823 ( 822) AGCTCTGGGCCAAGG 1 chr10:45311444-45312243 ( 15) AACTCTGGGCTAATC 1 chr5:125056732-125057346 ( 218) TAGCCAGGCCACCTG 1 chr11:59311790-59312990 ( 743) GGCCCTGAACCCCAG 1 chr3:37128117-37128837 ( 493) TGCCCGGGGAACCTG 1 chr2:26484919-26485755 ( 214) GGCCCAGGCCTAAGG 1 chr19:42016673-42017472 ( 567) TGGTCAGGCCTCAGG 1 chr15:77888063-77888703 ( 600) AGCCCAGAACAGAGC 1 chr1:91956233-91956817 ( 79) AACTCTGAGCACATA 1 chr15:75757872-75758579 ( 485) AGCTCAGTGCTCCTC 1 chr15:66891763-66893113 ( 120) GGCCCTGTGATCTTG 1 chr13:48227498-48228346 ( 511) GGGCCAGAACTCCGC 1 chr2:160872202-160873163 ( 344) GACCCTGGACTCCCG 1 chr13:62855904-62856806 ( 558) AGGCCAGGGTACCTG 1 chr15:25915728-25916468 ( 479) GGCTCTGGAAATCTC 1 chr11:75538249-75538877 ( 266) TGCTCTGACCACTTC 1 chr8:122636472-122637392 ( 723) TGCTCTGGGACCCTA 1 chr2:69673558-69674376 ( 135) TAGTCAGAGCACTGG 1 chr4:43038998-43039732 ( 210) TGCCCAGAGACGCTC 1 chr6:72383040-72383702 ( 276) GGCTCTGGAAAGAAC 1 chr15:34795064-34795760 ( 183) GAGCCTGGAAAGCAG 1 chr2:26487449-26488199 ( 515) TGGCCAGGGACGCTC 1 chr8:111710934-111711702 ( 25) TGTCCTGGGCAGCGG 1 chr12:27390261-27391004 ( 679) AAGTCTGGACTCAAA 1 chr10:80940445-80941162 ( 189) GGCTCAGAAAAGTTC 1 chr13:81690312-81691137 ( 145) TAGCCTGGCCTAAAG 1 chr12:112617839-11261859 ( 595) TGCCCAGGACCCGTC 1 chr7:45460723-45461396 ( 110) AAGCCTGGGAAGAGA 1 chr1:36469598-36470779 ( 505) AACCCAGGCCTTGTG 1 chr10:80930116-80930840 ( 510) GGCTCGGGGCTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 71033 bayes= 11.4834 E= 2.3e+002 105 -1255 -3 12 20 -1255 143 -1255 -1255 144 -3 -378 -1255 137 -1255 46 -1255 192 -1255 -1255 95 -1255 -303 117 -1255 -1255 187 -1255 20 -1255 136 -279 36 -82 101 -1255 44 134 -1255 -378 72 -99 -1255 107 -80 106 -45 -98 28 77 -303 2 -22 -298 21 97 -148 -8 129 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 60 E= 2.3e+002 0.483333 0.000000 0.266667 0.250000 0.266667 0.000000 0.733333 0.000000 0.000000 0.716667 0.266667 0.016667 0.000000 0.683333 0.000000 0.316667 0.000000 1.000000 0.000000 0.000000 0.450000 0.000000 0.033333 0.516667 0.000000 0.000000 1.000000 0.000000 0.266667 0.000000 0.700000 0.033333 0.300000 0.150000 0.550000 0.000000 0.316667 0.666667 0.000000 0.016667 0.383333 0.133333 0.000000 0.483333 0.133333 0.550000 0.200000 0.116667 0.283333 0.450000 0.033333 0.233333 0.200000 0.033333 0.316667 0.450000 0.083333 0.250000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- [AGT][GA][CG][CT]C[TA]G[GA][GA][CA][TA][CG][CAT][TGA][GC] -------------------------------------------------------------------------------- Time 1352.02 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 21 sites = 5 llr = 114 E-value = 3.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::8::a:2::a8:2::a:::: pos.-specific C :6:::::::8:::228::aa: probability G :42a8:a2::::a6:2:6::: matrix T a:::2::6a2:2::8::4::a bits 2.1 * * * * * * 1.9 * * ** * * * * *** 1.7 * * ** * * * * *** 1.5 * * ** * *** * *** Relative 1.3 * ***** ***** *** *** Entropy 1.1 * ***** ***** ******* (33.0 bits) 0.8 ******* ***** ******* 0.6 ********************* 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel TCAGGAGTTCAAGGTCAGCCT consensus GG T A T T ACG T sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr9:21751868-21752893 98 4.32e-13 GGCAGGAAGA TCAGGAGTTCAAGGTCATCCT CCCCTACATA chr10:80940445-80941162 60 4.32e-13 GGCAGGAGGG TCAGGAGTTCAAGGTCATCCT CCCTGCATAG chr1:36469598-36470779 1011 5.06e-12 GGACATAGGA TCGGGAGTTCAAGGTCAGCCT CAGATTTGAA chr15:66885900-66886633 547 2.39e-10 TGCCTTGCCG TGAGGAGGTCATGCCCAGCCT TGGCAGTCAG chr13:48227498-48228346 690 2.92e-10 AACCTTGCCC TGAGTAGATTAAGATGAGCCT TCAAAGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:21751868-21752893 4.3e-13 97_[+10]_907 chr10:80940445-80941162 4.3e-13 59_[+10]_637 chr1:36469598-36470779 5.1e-12 1010_[+10]_150 chr15:66885900-66886633 2.4e-10 546_[+10]_166 chr13:48227498-48228346 2.9e-10 689_[+10]_138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=21 seqs=5 chr9:21751868-21752893 ( 98) TCAGGAGTTCAAGGTCATCCT 1 chr10:80940445-80941162 ( 60) TCAGGAGTTCAAGGTCATCCT 1 chr1:36469598-36470779 ( 1011) TCGGGAGTTCAAGGTCAGCCT 1 chr15:66885900-66886633 ( 547) TGAGGAGGTCATGCCCAGCCT 1 chr13:48227498-48228346 ( 690) TGAGTAGATTAAGATGAGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 70475 bayes= 13.2171 E= 3.8e+002 -897 -897 -897 212 -897 118 55 -897 178 -897 -45 -897 -897 -897 187 -897 -897 -897 155 -20 210 -897 -897 -897 -897 -897 187 -897 -22 -897 -45 138 -897 -897 -897 212 -897 160 -897 -20 210 -897 -897 -897 178 -897 -897 -20 -897 -897 187 -897 -22 -40 113 -897 -897 -40 -897 180 -897 160 -45 -897 210 -897 -897 -897 -897 -897 113 80 -897 192 -897 -897 -897 192 -897 -897 -897 -897 -897 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 5 E= 3.8e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.400000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.200000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.200000 0.600000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.800000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- T[CG][AG]G[GT]AG[TAG]T[CT]A[AT]G[GAC][TC][CG]A[GT]CCT -------------------------------------------------------------------------------- Time 1492.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:93642725-93643326 1.78e-15 1_[+5(7.81e-05)]_28_[+3(5.90e-05)]_19_[+4(1.46e-06)]_39_[+4(8.31e-05)]_155_[+1(4.55e-06)]_7_[+4(5.98e-05)]_38_[+4(2.03e-11)]_37_[+8(7.62e-11)]_108 chr10:80930116-80930840 3.33e-08 28_[+3(2.19e-05)]_304_[+1(8.15e-06)]_222_[+2(3.90e-05)]_32_[+5(1.87e-08)]_32_[+7(5.46e-07)]_16 chr10:81072192-81072934 1.60e-04 261_[+1(8.15e-06)]_237_[+10(8.63e-05)]_62_[+6(9.81e-05)]_124_[+9(2.15e-06)]_1 chr10:80940445-80941162 3.92e-11 59_[+10(4.32e-13)]_502_[+2(4.12e-06)]_25_[+3(6.93e-07)]_70 chr10:45311444-45312243 1.25e-05 14_[+9(2.37e-05)]_96_[+4(1.26e-06)]_158_[+1(1.46e-05)]_70_[+3(9.24e-07)]_390 chr11:75538249-75538877 3.10e-05 174_[+3(1.84e-06)]_19_[+3(4.88e-05)]_22_[+9(5.59e-05)]_151_[+2(8.65e-05)]_36_[+8(6.49e-05)]_121 chr11:59311790-59312990 1.14e-05 33_[+2(2.26e-05)]_274_[+7(5.70e-08)]_35_[+2(3.15e-05)]_116_[+1(3.02e-05)]_229_[+9(2.64e-05)]_220_[+6(4.46e-05)]_29_[+9(4.71e-05)]_168 chr11:61038023-61038954 7.28e-07 115_[+8(3.73e-05)]_104_[+6(1.42e-05)]_78_[+9(6.73e-06)]_96_[+1(2.35e-05)]_14_[+3(4.25e-08)]_355_[+2(4.33e-05)]_68 chr11:6481396-6482367 9.81e-10 7_[+10(3.14e-05)]_81_[+5(2.27e-07)]_56_[+4(4.30e-07)]_34_[+8(2.32e-05)]_14_[+2(1.58e-05)]_55_[+1(8.92e-05)]_50_[+1(6.36e-05)]_193_[+3(1.61e-06)]_24_[+3(4.02e-05)]_63_[+6(4.46e-05)]_119_[+5(7.85e-06)]_16_[+10(7.31e-05)]_25 chr11:59307629-59308768 2.90e-07 67_[+3(5.16e-07)]_107_[+3(3.09e-06)]_227_[+4(1.68e-06)]_19_[+5(1.51e-07)]_220_[+3(1.28e-05)]_85_[+9(1.17e-05)]_44_[+3(1.46e-07)]_209 chr11:98671678-98672393 1.27e-08 49_[+6(4.77e-07)]_198_[+4(1.46e-06)]_46_[+1(8.92e-05)]_46_[+1(1.46e-05)]_18_[+10(9.12e-05)]_144_[+5(4.10e-06)]_98_[+2(4.12e-06)]_3 chr11:90275464-90276273 3.66e-06 87_[+5(1.12e-08)]_412_[+5(2.90e-06)]_30_[+4(1.17e-06)]_168_[+2(3.56e-06)]_26 chr11:54331278-54332036 6.57e-06 26_[+5(9.10e-08)]_224_[+8(5.82e-05)]_64_[+1(1.46e-05)]_129_[+6(3.44e-05)]_109_[+3(9.30e-05)]_28_[+6(6.47e-06)]_71 chr11:95533718-95534393 1.95e-02 288_[+1(7.87e-05)]_98_[+2(3.15e-05)]_60_[+3(3.65e-05)]_55_[+6(3.44e-05)]_113 chr11:67074879-67075569 4.86e-06 75_[+2(2.26e-05)]_323_[+9(1.40e-08)]_175_[+5(4.52e-07)]_62 chr11:67081014-67081680 3.95e-05 78_[+2(7.14e-05)]_63_[+2(7.86e-05)]_128_[+2(2.83e-05)]_30_[+1(1.46e-05)]_164_[+1(1.46e-05)]_38_[+9(1.79e-06)]_3_[+3(4.43e-05)]_57 chr11:61062370-61063082 6.69e-06 26_[+6(4.77e-07)]_42_[+2(1.08e-05)]_225_[+3(1.03e-05)]_368 chr12:52671351-52671937 1.13e-05 32_[+9(2.13e-05)]_88_[+2(5.87e-05)]_94_[+1(6.36e-05)]_104_[+3(5.98e-07)]_203 chr12:17746987-17747690 4.77e-11 64_[+4(3.09e-07)]_20_[+3(4.43e-05)]_36_[+10(3.47e-05)]_70_[+2(4.33e-05)]_29_[+4(8.99e-05)]_159_[+3(3.09e-06)]_42_[+7(4.51e-09)]_24_[+5(4.31e-05)]_91 chr12:112617839-11261859 2.29e-04 119_[+3(8.16e-06)]_237_[+6(1.64e-05)]_16_[+1(8.15e-06)]_32_[+2(2.83e-05)]_289 chr12:27390261-27391004 1.09e-06 2_[+2(4.80e-05)]_95_[+4(2.96e-08)]_146_[+3(1.15e-05)]_89_[+6(7.09e-05)]_50_[+1(2.35e-05)]_105_[+2(9.50e-05)]_159 chr13:48227498-48228346 9.17e-10 61_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_[+2(3.56e-06)]_29_[+4(2.07e-06)]_197_[+1(8.92e-05)]_57_[+9(4.30e-05)]_3_[+3(1.78e-05)]_46_[+6(7.09e-05)]_79_[+10(2.92e-10)]_138 chr13:62855904-62856806 1.85e-14 52_[+4(1.03e-13)]_156_[+3(4.50e-06)]_100_[+4(4.83e-06)]_37_[+1(4.55e-06)]_2_[+2(4.80e-05)]_118_[+9(5.13e-05)]_11_[+7(9.65e-07)]_15_[+10(6.95e-05)]_268 chr13:37130560-37131151 6.95e-05 158_[+4(4.46e-08)]_31_[+1(8.92e-05)]_242_[+3(3.65e-05)]_40_[+2(3.15e-05)]_49 chr13:41545980-41546746 2.81e-07 28_[+5(3.34e-07)]_262_[+6(6.32e-05)]_70_[+1(8.15e-06)]_35_[+3(1.06e-06)]_119_[+4(5.26e-05)]_160 chr13:113262600-11326331 5.91e-03 130_[+3(6.93e-07)]_236_[+1(6.36e-05)]_316 chr13:99210768-99211374 3.93e-11 63_[+3(2.19e-05)]_29_[+5(3.91e-14)]_200_[+8(5.91e-05)]_113_[+9(1.33e-05)]_111 chr13:81690312-81691137 6.73e-07 47_[+4(2.00e-09)]_45_[+2(2.01e-05)]_53_[+4(2.54e-06)]_41_[+2(3.90e-05)]_58_[+6(2.71e-05)]_46_[+4(5.26e-05)]_27_[+1(2.02e-05)]_352_[+4(8.09e-07)]_21 chr13:99323556-99324231 1.14e-03 364_[+4(5.98e-05)]_85_[+4(2.71e-06)]_40_[+6(7.91e-05)]_74_[+10(1.23e-05)]_11_[+1(7.87e-05)]_17 chr14:46950823-46951599 8.03e-03 38_[+5(9.30e-05)]_357_[+1(1.46e-05)]_226_[+4(6.54e-06)]_99 chr15:97811911-97812695 6.65e-07 57_[+3(7.10e-05)]_79_[+7(3.36e-06)]_37_[+9(9.57e-05)]_6_[+9(2.13e-05)]_225_[+6(4.46e-05)]_10_[+6(1.07e-05)]_51_[+2(3.15e-05)]_23_[+7(1.60e-07)]_174 chr15:68194220-68194869 8.66e-06 47_[+3(1.72e-07)]_210_[+1(2.67e-05)]_35_[+9(1.69e-05)]_191_[+2(4.80e-05)]_70_[+6(2.71e-05)]_20 chr15:66883318-66884276 1.46e-11 [+9(3.62e-06)]_207_[+4(1.69e-11)]_118_[+7(1.61e-06)]_31_[+3(1.28e-05)]_118_[+8(4.02e-05)]_297_[+6(8.74e-05)]_8_[+2(1.23e-05)]_52 chr15:34795064-34795760 1.28e-04 182_[+9(9.57e-05)]_137_[+1(2.02e-05)]_144_[+3(1.03e-05)]_142_[+2(1.23e-05)]_26 chr15:66891763-66893113 6.04e-06 4_[+2(5.87e-05)]_100_[+9(4.30e-05)]_228_[+3(3.51e-06)]_44_[+2(1.08e-05)]_14_[+6(4.46e-05)]_17_[+2(8.65e-05)]_12_[+2(5.87e-05)]_53_[+1(4.55e-06)]_560_[+6(3.95e-06)]_22_[+10(2.30e-05)]_50_[+8(6.66e-05)]_68 chr15:56692195-56692841 8.78e-05 22_[+9(1.02e-05)]_69_[+9(5.81e-06)]_5_[+2(6.48e-05)]_114_[+1(2.67e-05)]_104_[+1(5.13e-05)]_230_[+3(1.78e-05)]_12 chr15:28133135-28133948 4.51e-08 134_[+2(1.44e-07)]_34_[+5(1.78e-07)]_64_[+6(4.46e-05)]_56_[+9(1.33e-05)]_139_[+1(7.87e-05)]_248_[+5(9.62e-06)]_12_[+8(6.00e-05)] chr15:75757872-75758579 6.44e-04 108_[+3(5.73e-06)]_19_[+2(1.78e-05)]_64_[+6(3.95e-05)]_88_[+2(4.33e-05)]_119_[+9(3.57e-05)]_5_[+9(4.30e-05)]_3_[+3(6.47e-05)]_180 chr15:77888063-77888703 9.23e-11 79_[+4(6.94e-07)]_3_[+4(6.94e-07)]_7_[+4(2.40e-07)]_13_[+3(5.37e-05)]_41_[+5(2.67e-09)]_272_[+7(8.22e-06)]_8_[+2(7.86e-05)]_33_[+9(3.57e-05)]_26 chr15:25915728-25916468 2.69e-03 213_[+6(2.09e-05)]_64_[+1(3.02e-05)]_180_[+9(5.59e-05)]_12_[+5(7.02e-05)]_210 chr15:66885900-66886633 2.06e-14 203_[+3(2.19e-05)]_49_[+1(3.26e-05)]_1_[+1(8.15e-06)]_46_[+6(1.21e-05)]_87_[+9(6.43e-07)]_63_[+10(2.24e-05)]_5_[+10(2.39e-10)]_110_[+5(5.30e-09)]_31 chr15:85698553-85699119 4.81e-04 12_[+3(3.98e-06)]_232_[+1(6.36e-05)]_88_[+3(5.98e-07)]_4_[+9(2.43e-07)]_155 chr15:66877758-66878823 2.64e-05 126_[+1(8.92e-05)]_223_[+2(9.50e-05)]_155_[+1(7.87e-05)]_219_[+7(6.79e-05)]_48_[+9(2.37e-05)]_81_[+3(1.62e-08)]_16_[+6(9.81e-05)]_96 chr15:58986361-58987006 1.07e-04 132_[+5(7.47e-07)]_142_[+1(8.92e-05)]_28_[+2(1.08e-05)]_64_[+3(2.19e-05)]_204 chr16:33940969-33942007 4.79e-11 221_[+4(6.78e-05)]_45_[+5(2.87e-07)]_194_[+1(6.36e-05)]_12_[+6(6.47e-06)]_197_[+3(4.02e-05)]_15_[+9(2.13e-05)]_32_[+2(1.58e-05)]_60_[+7(2.91e-08)]_22_[+3(1.03e-05)]_[+9(7.98e-07)]_63 chr16:30063016-30064679 3.45e-04 149_[+2(3.08e-06)]_80_[+2(9.51e-06)]_153_[+6(4.96e-05)]_353_[+7(3.97e-05)]_347_[+1(8.15e-06)]_294_[+2(5.87e-05)]_55_[+8(6.22e-05)]_38_[+3(2.70e-05)]_63 chr19:42016673-42017472 2.95e-14 48_[+5(1.35e-11)]_22_[+7(2.34e-06)]_77_[+6(7.25e-07)]_189_[+1(7.87e-05)]_4_[+1(7.87e-05)]_29_[+3(3.26e-07)]_101_[+9(3.57e-05)]_6_[+2(1.08e-05)]_197 chr19:56939731-56940324 1.34e-02 155_[+1(7.87e-05)]_62_[+2(7.86e-05)]_330_[+2(2.26e-05)]_6 chr1:39449099-39449934 7.41e-03 31_[+3(7.77e-05)]_330_[+2(6.48e-05)]_26_[+6(5.69e-05)]_10_[+1(6.36e-05)]_377 chr1:91413901-91414660 9.53e-15 30_[+3(2.43e-05)]_34_[+3(1.03e-05)]_74_[+7(9.65e-07)]_11_[+3(1.97e-08)]_61_[+1(4.39e-05)]_173_[+8(4.86e-13)]_132_[+9(1.17e-05)]_81_[+2(1.40e-05)]_8 chr1:87203702-87204348 9.68e-04 157_[+5(3.10e-07)]_60_[+6(4.96e-05)]_89_[+5(4.85e-06)]_161_[+3(1.98e-05)]_93 chr1:91407699-91408223 2.63e-04 91_[+5(3.69e-08)]_9_[+2(7.14e-05)]_384 chr1:91956233-91956817 6.21e-04 78_[+9(4.30e-05)]_68_[+6(1.77e-05)]_100_[+1(1.10e-06)]_302 chr1:170655330-170656359 3.24e-03 13_[+5(8.68e-05)]_217_[+1(6.36e-05)]_60_[+1(4.55e-06)]_22_[+1(2.02e-05)]_82_[+1(8.92e-05)]_48_[+1(1.46e-05)]_261_[+3(3.98e-06)]_73_[+3(5.37e-05)]_128 chr1:36469598-36470779 2.22e-24 105_[+2(5.87e-05)]_12_[+5(8.09e-05)]_22_[+8(4.86e-13)]_1_[+8(8.05e-07)]_78_[+3(2.70e-05)]_105_[+8(2.46e-05)]_121_[+1(5.35e-05)]_127_[+1(9.38e-06)]_204_[+4(1.22e-05)]_54_[+10(5.06e-12)]_6_[+10(6.95e-05)]_22_[+4(1.03e-13)]_19_[+4(6.14e-11)]_40 chr1:177441252-177442123 2.85e-05 422_[+6(1.42e-05)]_19_[+9(7.79e-06)]_83_[+7(1.14e-06)]_40_[+1(6.36e-05)]_47_[+6(7.09e-05)]_15_[+7(9.05e-05)]_116_[+3(3.98e-06)]_27 chr1:92787053-92787745 4.42e-06 57_[+3(3.51e-06)]_66_[+7(9.65e-07)]_47_[+2(4.77e-06)]_94_[+6(3.95e-05)]_23_[+1(4.39e-05)]_329 chr1:132370626-132371282 2.50e-09 82_[+2(4.80e-05)]_194_[+1(8.15e-06)]_255_[+5(1.15e-09)]_7_[+3(5.37e-05)]_[+4(8.05e-08)]_22 chr2:26502150-26502692 4.26e-05 209_[+2(8.31e-07)]_33_[+1(6.36e-05)]_158_[+7(1.61e-06)]_102 chr2:26487449-26488199 6.26e-04 63_[+2(1.58e-05)]_368_[+1(2.02e-05)]_35_[+2(2.66e-06)]_176_[+6(2.71e-05)]_57 chr2:26484919-26485755 4.52e-08 51_[+6(6.47e-06)]_151_[+9(2.93e-05)]_71_[+8(8.96e-05)]_78_[+1(7.87e-05)]_113_[+1(2.35e-05)]_20_[+7(2.02e-06)]_181_[+4(1.93e-08)]_64 chr2:69673558-69674376 1.23e-06 134_[+9(7.12e-05)]_295_[+3(1.60e-05)]_131_[+5(2.38e-09)]_20_[+5(1.01e-05)]_49_[+4(1.17e-06)]_78 chr2:160872202-160873163 6.30e-04 33_[+3(3.51e-06)]_285_[+9(4.71e-05)]_58_[+2(1.23e-05)]_422_[+7(5.01e-07)]_93 chr2:114087212-114087846 2.72e-02 63_[+2(5.48e-06)]_37_[+2(7.86e-05)]_51_[+4(5.73e-05)]_432 chr3:37128117-37128837 3.01e-04 308_[+5(3.54e-05)]_13_[+1(7.87e-05)]_82_[+10(7.13e-05)]_33_[+9(2.93e-05)]_42_[+7(4.70e-06)]_156 chr3:87982114-87984371 6.42e-08 21_[+6(7.91e-05)]_[+2(4.80e-05)]_4_[+2(9.50e-05)]_131_[+7(4.15e-07)]_69_[+2(4.33e-05)]_30_[+1(3.26e-05)]_14_[+6(2.71e-05)]_108_[+2(4.77e-06)]_136_[+6(9.81e-05)]_98_[+7(6.88e-06)]_54_[+8(6.16e-05)]_402_[+2(7.14e-05)]_90_[+1(6.36e-05)]_19_[+1(2.67e-05)]_99_[+9(6.73e-06)]_73_[+2(1.06e-07)]_115_[+1(8.15e-06)]_141_[+3(9.30e-05)]_10_[+3(3.65e-05)]_154_[+3(6.93e-07)]_108_[+1(9.45e-05)]_2_[+1(8.92e-05)]_51 chr3:99254691-99255387 1.08e-06 115_[+1(1.46e-05)]_168_[+2(3.56e-06)]_93_[+1(1.46e-05)]_172_[+4(4.67e-07)]_3_[+3(7.26e-06)]_64 chr3:88150177-88151021 1.04e-09 80_[+2(2.86e-07)]_176_[+3(9.30e-05)]_3_[+3(1.32e-08)]_11_[+3(9.15e-06)]_48_[+7(8.80e-07)]_40_[+2(1.95e-06)]_2_[+1(1.46e-05)]_221_[+9(1.50e-05)]_40_[+2(1.58e-05)]_63 chr3:88138276-88138625 7.52e-06 26_[+3(1.61e-06)]_1_[+3(1.60e-05)]_7_[+9(4.26e-06)]_75_[+1(2.02e-05)]_30_[+2(5.87e-05)]_120 chr3:145654797-145655492 1.56e-08 80_[+5(9.63e-05)]_[+3(1.03e-05)]_5_[+4(1.09e-06)]_5_[+5(9.92e-08)]_58_[+9(1.17e-05)]_32_[+2(5.87e-05)]_149_[+9(8.91e-05)]_71_[+5(5.23e-05)]_129 chr4:43038998-43039732 2.15e-06 8_[+3(8.50e-05)]_176_[+9(8.91e-05)]_111_[+1(2.26e-05)]_4_[+1(6.36e-05)]_36_[+10(9.64e-05)]_56_[+2(4.77e-06)]_25_[+3(5.11e-08)]_197 chr4:135765567-135766186 6.12e-05 143_[+2(2.28e-06)]_2_[+3(1.78e-05)]_47_[+6(3.13e-05)]_45_[+1(2.02e-05)]_64_[+6(6.47e-06)]_34_[+1(1.46e-05)]_202 chr4:74251643-74252226 1.67e-02 327_[+1(2.02e-05)]_211_[+2(7.86e-05)]_20 chr4:141423232-141423917 1.89e-07 263_[+2(4.77e-06)]_25_[+6(1.42e-05)]_86_[+3(2.99e-05)]_43_[+9(1.80e-08)]_165_[+1(3.74e-05)]_27 chr5:125110919-125111688 1.82e-08 106_[+9(3.62e-06)]_97_[+2(7.26e-06)]_154_[+1(8.15e-06)]_29_[+7(2.03e-07)]_53_[+6(2.09e-05)]_4_[+7(8.73e-06)]_48_[+3(4.50e-06)]_172 chr5:125056732-125057346 7.18e-09 54_[+3(3.98e-06)]_35_[+7(2.18e-06)]_72_[+2(1.40e-05)]_1_[+9(2.64e-05)]_15_[+6(2.71e-05)]_50_[+9(3.62e-06)]_46_[+1(9.38e-06)]_235 chr6:72383040-72383702 1.71e-06 28_[+2(2.83e-05)]_114_[+3(2.72e-06)]_93_[+9(9.57e-05)]_171_[+6(3.13e-05)]_2_[+4(2.54e-06)]_167 chr6:108668244-108668804 4.59e-11 77_[+6(7.09e-05)]_15_[+8(1.47e-14)]_49_[+9(3.06e-06)]_311_[+2(1.58e-05)]_42 chr6:108668244-108668981 2.95e-12 77_[+6(7.09e-05)]_15_[+8(1.47e-14)]_49_[+9(3.06e-06)]_311_[+2(1.58e-05)]_109_[+4(4.61e-05)]_89 chr7:63956821-63957364 1.84e-03 181_[+2(1.58e-05)]_46_[+9(1.90e-05)]_19_[+1(4.55e-06)]_257 chr7:46370884-46371930 8.73e-16 106_[+10(5.92e-05)]_160_[+3(8.50e-05)]_274_[+6(4.46e-05)]_101_[+9(2.13e-05)]_15_[+2(6.48e-05)]_66_[+5(2.87e-07)]_30_[+8(7.62e-11)]_13_[+2(9.98e-07)]_1_[+2(9.98e-07)]_29_[+4(2.94e-09)]_3_[+4(2.94e-09)]_39 chr7:45460723-45461396 1.46e-03 183_[+6(1.64e-05)]_175_[+1(3.74e-05)]_242_[+2(4.80e-05)]_37 chr8:122636472-122637392 1.44e-05 101_[+4(2.90e-06)]_250_[+2(3.51e-05)]_181_[+1(3.02e-05)]_116_[+2(8.56e-08)]_13_[+9(6.07e-05)]_59_[+2(3.15e-05)]_31_[+3(1.78e-05)]_53 chr8:34679746-34680516 9.98e-06 118_[+3(4.50e-06)]_112_[+9(1.90e-05)]_205_[+4(1.46e-06)]_274 chr8:111710934-111711702 1.05e-02 139_[+1(9.25e-05)]_180_[+1(8.15e-06)]_126_[+2(7.26e-06)]_288 chr8:120265441-120266019 5.49e-06 16_[+3(6.46e-06)]_43_[+7(3.75e-07)]_13_[+6(3.13e-05)]_125_[+9(2.13e-05)]_23_[+1(2.67e-05)]_48_[+1(5.13e-05)]_11_[+1(7.87e-05)]_203 chr8:126583914-126584586 4.86e-07 25_[+7(1.64e-08)]_103_[+7(3.18e-08)]_338_[+2(8.35e-06)]_161 chr8:118249154-118249839 1.22e-05 230_[+6(8.74e-05)]_25_[+5(3.40e-05)]_49_[+1(8.15e-06)]_178_[+3(1.60e-05)]_25_[+8(2.58e-05)]_25_[+6(2.40e-05)]_46 chr9:21751868-21752893 1.11e-12 13_[+5(6.97e-07)]_59_[+10(4.32e-13)]_8_[+10(1.92e-05)]_121_[+3(1.22e-06)]_156_[+1(4.39e-05)]_155_[+6(6.32e-05)]_111_[+3(7.10e-05)]_115_[+6(3.95e-06)]_138 chr9:44078766-44079440 7.08e-09 281_[+3(5.08e-06)]_115_[+9(3.92e-05)]_27_[+3(1.07e-08)]_2_[+6(6.32e-05)]_6_[+9(1.69e-05)]_40_[+2(3.56e-06)]_22_[+7(5.70e-08)]_60 chr9:94670098-94670696 7.96e-08 37_[+5(9.92e-08)]_273_[+1(8.15e-06)]_41_[+1(7.87e-05)]_63_[+3(5.73e-06)]_6_[+6(1.33e-06)]_97 chr9:57831107-57831838 4.66e-04 31_[+4(3.85e-05)]_155_[+6(7.91e-05)]_3_[+1(8.15e-06)]_205_[+1(8.92e-05)]_258_[+3(2.70e-05)]_2 chrX:93288108-93288864 8.69e-08 60_[+4(4.82e-05)]_42_[+4(8.72e-07)]_4_[+2(6.48e-05)]_11_[+4(3.10e-06)]_3_[+4(1.52e-05)]_51_[+4(2.29e-10)]_78_[+1(2.02e-05)]_237_[+7(3.36e-06)]_4_[+6(9.81e-05)]_110 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************