MEME

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Discovered Motifs | Block diagrams of Motifs | Program information | Explanation

Discovered Motifs

Motif Overview

Motif 1	6.5e-049 93 sites
Motif 2	5.9e-025 93 sites
Motif 3	4.9e-027 93 sites
Motif 4	8.5e-015 26 sites
Motif 5	1.2e-005 22 sites
Motif 6	6.3e-006 93 sites
Motif 7	1.9e-004 23 sites
Motif 8	1.5e+000 6 sites
Motif 9	2.3e+002 60 sites
Motif 10	3.8e+002 5 sites

Further Analysis

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Motif 1

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Summary

Sequence Logo

E-value	6.5e-049
Width	10
Sites	93

PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[GA][GA]CAGCTG[CTG][CT]

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr1:91956233-91956817	272	1.10e-06	CGTCACAAAG	GGCAGCTGTT	CTCAAGCTGT
chr7:63956821-63957364	276	4.55e-06	AGCAGGTGCT	GGCAGCTGCT	ACAGGCCTTA
chr1:170655330-170656359	325	4.55e-06	CAGGATGCTC	AGCAGCTGTT	TAGTTGGGGG
chr15:66891763-66893113	583	4.55e-06	TGAGCTGCTG	GGCAGCTGCT	GAGTCTGAGG
chr13:62855904-62856806	412	4.55e-06	CTCCTATGTA	AGCAGCTGTT	GCTGGGGCAT
chr10:93642725-93643326	334	4.55e-06	TCTGGCCACA	GGCAGCTGCT	GCGCCCGCTA
chr9:57831107-57831838	221	8.15e-06	GCAGCCACGG	GGCAGCTGCC	ATACAGAATG
chr9:94670098-94670696	335	8.15e-06	CTGACCACAG	AGCAGCTGTC	ACAGTGACAG
chr8:118249154-118249839	340	8.15e-06	TTACAGTGGG	AGCAGCTGCT	AAGTGCTCGT
chr8:111710934-111711702	329	8.15e-06	GTAGAAGAGC	AGCAGCTGTC	GGTCTGAAGG
chr5:125110919-125111688	387	8.15e-06	GGGCCAAGAC	AGCAGCTGCT	GGCAGCCATG
chr3:87982114-87984371	1686	8.15e-06	AAAGGTTGCC	AGCAGCTGTC	TCTGAGCCCA
chr1:132370626-132371282	291	8.15e-06	GCATGGCAGA	AGCAGCTGTC	ACCACCGGCC
chr16:30063016-30064679	1138	8.15e-06	GCTCGAGCAC	AGCAGCTGCT	ATTTACCTTC
chr15:66885900-66886633	288	8.15e-06	GCAGCTGTGA	AGCAGCTGCT	CACTGTTCCT
chr13:41545980-41546746	396	8.15e-06	CAACCCCGCG	AGCAGCTGCT	GTAAGCTGCA
chr12:112617839-112618593	408	8.15e-06	CCCCAAACTT	AGCAGCTGCT	ACACTGCCCA
chr10:81072192-81072934	261	8.15e-06	GATCAGTGCC	AGCAGCTGCT	AGTGCCACTG
chr10:80930116-80930840	357	8.15e-06	GCCGCGGTGG	AGCAGCTGCT	GGTGGCCGCG
chr5:125056732-125057346	369	9.38e-06	CCGCGCCAGC	AGCAGCTGCC	ACTTCCAGAA
chr1:36469598-36470779	721	9.38e-06	CATTTCCACA	AGCAGCTGCC	TCAGCTGGCC
chr3:88150177-88151021	480	1.46e-05	GGAGGAGGGT	GACAGCTGTC	TTCAGTGCAG
chr3:99254691-99255387	115	1.46e-05	AGCCCGGGGG	AACAGCTGTT	GTCAAAATCC
chr14:46950823-46951599	420	1.46e-05	CAGCACACAC	GGCAGCTGGT	CTGAAGAACA
chr11:67081014-67081680	344	1.46e-05	CTCAGCGCTG	GACAGCTGCT	TCTACATAGA
chr11:54331278-54332036	364	1.46e-05	AGCAGGAAGG	GACAGCTGTC	AGTATCCAGT
chr11:98671678-98672393	381	1.46e-05	CAGTAACTGG	GGCAGCTGGT	GCTGAGTCAC
chr10:45311444-45312243	304	1.46e-05	CTGTGAGGCA	GGCAGCTGGT	GGATGAATCA
chrX:93288108-93288864	369	2.02e-05	GCCGGCTCCC	AACAGCTGCT	TGGCGGGGGA
chr4:74251643-74252226	327	2.02e-05	GTGCGCAGCG	AACAGCTGTC	ACCCAGTGCG
chr4:135765567-135766186	288	2.02e-05	ACAGAGCAAG	GACAGCTGCC	TGAGAGTCTC
chr3:88138276-88138625	174	2.02e-05	TGACGTCAAT	AGCAGCTGGT	GGAGTTTGGG
chr2:26487449-26488199	446	2.02e-05	CTGTGGAGGG	GACAGCTGCC	CCTGCTGGGC
chr15:34795064-34795760	334	2.02e-05	GCATCAGATA	GGCAGCTGGC	AGGGGTGGGG
chr13:81690312-81691137	421	2.02e-05	CCGACTGTGT	AACAGCTGTC	CCCACAAGCA
chr4:43038998-43039732	335	2.26e-05	GGGGATGGGC	AGCAGCTGGC	ATTAAACAGC
chr2:26484919-26485755	525	2.35e-05	AAGGCTCCGC	TGCAGCTGTT	GACAGACATG
chr12:27390261-27391004	454	2.35e-05	AGGACAGCTC	TGCAGCTGTT	GCTCTGCATA
chr11:61038023-61038954	444	2.35e-05	CACCTTCAGC	TGCAGCTGTT	TTGAGGGAAT
chr8:120265441-120266019	286	2.67e-05	GGTCACCCTC	TGCAGCTGTC	CTCCTTGGCT
chr15:56692195-56692841	255	2.67e-05	AGCGTTTCTG	TGCAGCTGCT	ACAGAGACTC
chr15:68194220-68194869	282	2.67e-05	GCTCAGATAC	TGCAGCTGCT	AAGCAGCTCC
chr8:122636472-122637392	568	3.02e-05	AGATCTGTGC	GACAGCTGGC	GTTTATTTTT
chr15:25915728-25916468	288	3.02e-05	GCACTAATCC	TGCAGCTGCC	CAGATCCCTC
chr11:59311790-59312990	503	3.02e-05	CGGACGGGGA	GACAGCTGGC	CTAATCTTGC
chr7:45460723-45461396	369	3.74e-05	TGTGTGGTCA	GGCAGCTGTA	CGGCTCTGGA
chr4:141423232-141423917	648	3.74e-05	TCCCCCAGCT	GGCAGCTGAT	GGCACAGTCA
chr9:21751868-21752893	449	4.39e-05	AATGGCAGGC	AGCAGCTGAT	TTCTGACACA
chr1:92787053-92787745	353	4.39e-05	GGCCGGGCTG	GGCAGCTGAC	TTCACGCCAC
chr1:91413901-91414660	300	4.39e-05	CGTGACAGTT	GGCAGCTGCA	GCCGCTTCCG
chr3:37128117-37128837	305	6.36e-05	GAAAGCTACC	AACAGCTGTG	GTGCACTTTC
chr2:26502150-26502692	257	6.36e-05	GGGAAAAAGC	GACAGCTGCG	GAGCCCGCCA
chr1:177441252-177442123	605	6.36e-05	CCCCTCCCCG	CGCAGCTGTC	GCCGCCGCCT
chr1:39449099-39449934	448	6.36e-05	CTGAGCCAGG	GACAGCTGCG	GACTCGGGTC
chr16:33940969-33942007	506	6.36e-05	CTTGCTGGAT	AACAGCTGTG	TCATCATTGG
chr15:85698553-85699119	269	6.36e-05	GAGTTATCCG	GACAGCTGTA	GTTGCACACG
chr13:113262600-113263317	391	6.36e-05	CCTGGAGTCT	GACAGCTGCG	TTTGGAGTGC
chr12:52671351-52671937	244	6.36e-05	CCTTTTCAGT	CGCAGCTGCT	GCCTTCTCAT
chr11:6481396-6482367	414	6.36e-05	CTCGGCTGAA	GCCAGCTGTT	GTGTCCACAA
chr19:56939731-56940324	155	7.87e-05	AAAATGCCAT	GTCAGCTGCT	TCCCTACCAG
chr19:42016673-42017472	387	7.87e-05	TTCAGTCTGG	AGCAGCTGGG	GAGGAGCAGC
chr15:66877758-66878823	529	7.87e-05	CCATTGCTCA	GGCAGCTGGA	GAGAATTTGA
chr15:28133135-28133948	493	7.87e-05	TGCTTCTGCA	GACAGCTGCA	GTGTTTGTGC
chr13:99323556-99324231	648	7.87e-05	CCCAGTGAAT	GTCAGCTGTC	TCTTCCTTAT
chr11:95533718-95534393	288	7.87e-05	GGACTTGCAC	GCCAGCTGTC	CACTGCCTCT
chr15:58986361-58987006	299	8.92e-05	GCAGCTAAGC	AACAGCTGCA	AAGGCTGTGT
chr13:37130560-37131151	210	8.92e-05	TTTTGCAAAG	AACAGCTGCA	AAGCAATTTC
chr13:48227498-48228346	443	8.92e-05	GAGCCAATGA	ATCAGCTGTC	GGGGGAGGGA
chr8:126583914-126584586	328	1.12e-04	ATTTTAGCGC	CGCAGCTGGC	GCGGGGCGCC
chr1:91407699-91408223	345	1.12e-04	AGGAATGTTG	GCCAGCTGGT	CACAGCCTCA
chr11:61062370-61063082	398	1.12e-04	TCACACTCTC	CACAGCTGCC	TGGGGGTGGC
chr7:46370884-46371930	443	1.18e-04	TATATATAAA	GGCTGCTGTT	TCCCCATGGT
chr11:59307629-59308768	1030	1.18e-04	TTAAGTACAG	GTCAGCTGGC	TCCCAAGCAG
chr11:75538249-75538877	285	1.27e-04	ACTTCATGGT	GGCACCTGTT	TAATAAACAG
chr15:75757872-75758579	297	1.37e-04	CTCGATCCAT	GGCACCTGTC	GTGGGGCTAA
chr2:69673558-69674376	359	1.58e-04	GAGCGACAAG	TCCAGCTGTC	CCGGGTGCTG
chr15:77888063-77888703	352	1.58e-04	CACCCTAGCC	TCCAGCTGTC	TGCCATGTGC
chr3:145654797-145655492	347	1.75e-04	GAGCAGAAAG	GACAGCTGAG	TGTCTGCTAG
chr15:97811911-97812695	332	1.75e-04	GCCTACGCCA	GCCAGCTGTG	GGCCTGGTCT
chr12:17746987-17747690	367	1.75e-04	GAGTGAGCGG	GACAGCTGAG	GTGGTTTCTT
chr6:108668244-108668981	431	1.98e-04	AATAGGGCCT	GGCTGCTGGC	AAGGCCGCGG
chr6:108668244-108668804	431	1.98e-04	AATAGGGCCT	GGCTGCTGGC	AAGGCCGCGG
chr6:72383040-72383702	430	1.98e-04	ACTCCCTCAG	AACAGCTGAG	ATCCAGGCCT
chr11:90275464-90276273	406	1.98e-04	CTAGCTCCAA	GGCTGCTGGC	ATTCGCACCC
chr11:67074879-67075569	338	2.27e-04	GCGGGTGGGG	AGCACCTGGC	CTCCTGGCCC
chr15:66883318-66884276	592	2.44e-04	CTGGGCATGC	TGCAGCTGAG	GTTTGAGGCT
chr9:44078766-44079440	403	2.66e-04	GATCCACCCC	CCCAGCTGCT	CTGTGGCCAG
chr8:34679746-34680516	564	3.43e-04	CCCGGATGTT	TGCTGCTGGC	CGAGTGACGC
chr13:99210768-99211374	249	4.64e-04	ACAGTGTTCC	ATCACCTGTC	ACTGTCATTC
chr1:87203702-87204348	280	4.79e-04	CGGCCTTTGC	AACAGGTGGT	GGCAAGAGAA
chr2:114087212-114087846	469	6.09e-04	GTTTTACTAA	TGCAGCAGCC	AGGTCTTCAG
chr10:80940445-80941162	546	8.36e-04	CAGCCTAGAT	GACAGGTGGA	CCTGGGGAGG
chr2:160872202-160873163	583	1.15e-03	TCGGCGGGCG	CTCACCTGGC	GGCGGCGGCG

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name	Lowest p-value	Motif Location
chr10:93642725-93643326	4.55e-06
chr10:80930116-80930840	8.15e-06
chr10:81072192-81072934	8.15e-06
chr10:80940445-80941162	8.36e-04
chr10:45311444-45312243	1.46e-05
chr11:75538249-75538877	1.27e-04
chr11:59311790-59312990	3.02e-05
chr11:61038023-61038954	2.35e-05
chr11:6481396-6482367	6.36e-05
chr11:59307629-59308768	1.18e-04
chr11:98671678-98672393	1.46e-05
chr11:90275464-90276273	1.98e-04
chr11:54331278-54332036	1.46e-05
chr11:95533718-95534393	7.87e-05
chr11:67074879-67075569	2.27e-04
chr11:67081014-67081680	1.46e-05
chr11:61062370-61063082	1.12e-04
chr12:52671351-52671937	6.36e-05
chr12:17746987-17747690	1.75e-04
chr12:112617839-112618593	8.15e-06
chr12:27390261-27391004	2.35e-05
chr13:48227498-48228346	8.92e-05
chr13:62855904-62856806	4.55e-06
chr13:37130560-37131151	8.92e-05
chr13:41545980-41546746	8.15e-06
chr13:113262600-113263317	6.36e-05
chr13:99210768-99211374	4.64e-04
chr13:81690312-81691137	2.02e-05
chr13:99323556-99324231	7.87e-05
chr14:46950823-46951599	1.46e-05
chr15:97811911-97812695	1.75e-04
chr15:68194220-68194869	2.67e-05
chr15:66883318-66884276	2.44e-04
chr15:34795064-34795760	2.02e-05
chr15:66891763-66893113	4.55e-06
chr15:56692195-56692841	2.67e-05
chr15:28133135-28133948	7.87e-05
chr15:75757872-75758579	1.37e-04
chr15:77888063-77888703	1.58e-04
chr15:25915728-25916468	3.02e-05
chr15:66885900-66886633	8.15e-06
chr15:85698553-85699119	6.36e-05
chr15:66877758-66878823	7.87e-05
chr15:58986361-58987006	8.92e-05
chr16:33940969-33942007	6.36e-05
chr16:30063016-30064679	8.15e-06
chr19:42016673-42017472	7.87e-05
chr19:56939731-56940324	7.87e-05
chr1:39449099-39449934	6.36e-05
chr1:91413901-91414660	4.39e-05
chr1:87203702-87204348	4.79e-04
chr1:91407699-91408223	1.12e-04
chr1:91956233-91956817	1.10e-06
chr1:170655330-170656359	4.55e-06
chr1:36469598-36470779	9.38e-06
chr1:177441252-177442123	6.36e-05
chr1:92787053-92787745	4.39e-05
chr1:132370626-132371282	8.15e-06
chr2:26502150-26502692	6.36e-05
chr2:26487449-26488199	2.02e-05
chr2:26484919-26485755	2.35e-05
chr2:69673558-69674376	1.58e-04
chr2:160872202-160873163	1.15e-03
chr2:114087212-114087846	6.09e-04
chr3:37128117-37128837	6.36e-05
chr3:87982114-87984371	8.15e-06
chr3:99254691-99255387	1.46e-05
chr3:88150177-88151021	1.46e-05
chr3:88138276-88138625	2.02e-05
chr3:145654797-145655492	1.75e-04
chr4:43038998-43039732	2.26e-05
chr4:135765567-135766186	2.02e-05
chr4:74251643-74252226	2.02e-05
chr4:141423232-141423917	3.74e-05
chr5:125110919-125111688	8.15e-06
chr5:125056732-125057346	9.38e-06
chr6:72383040-72383702	1.98e-04
chr6:108668244-108668804	1.98e-04
chr6:108668244-108668981	1.98e-04
chr7:63956821-63957364	4.55e-06
chr7:46370884-46371930	1.18e-04
chr7:45460723-45461396	3.74e-05
chr8:122636472-122637392	3.02e-05
chr8:34679746-34680516	3.43e-04
chr8:111710934-111711702	8.15e-06
chr8:120265441-120266019	2.67e-05
chr8:126583914-126584586	1.12e-04
chr8:118249154-118249839	8.15e-06
chr9:21751868-21752893	4.39e-05
chr9:44078766-44079440	2.66e-04
chr9:94670098-94670696	8.15e-06
chr9:57831107-57831838	8.15e-06
chrX:93288108-93288864	2.02e-05
		0 500 1000 1500 2000

Time 161.6 secs.

Motif 2

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Summary

Sequence Logo

E-value	5.9e-025
Width	15
Sites	93

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[TGA]G[GA][GA]G[CG][AT]GG[GA][AG][GA][AGT]G[GA]

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr8:122636472-122637392	694	8.56e-08	TCCATGGTGT	GGGGGCAGGGAAAGG	CCTCTGTTGA
chr3:87982114-87984371	1556	1.06e-07	GTGTGTGGGG	GGGGGCAGGGAGAGG	GCTAAATTCT
chr15:28133135-28133948	134	1.44e-07	GGCGCTGCCC	AGAGGCAGGGGAAGG	TTGCACTGAC
chr3:88150177-88151021	80	2.86e-07	AGCTGCTGTC	TGGGGGAGGGGATGG	TGGGACTTGG
chr2:26502150-26502692	209	8.31e-07	GGGGACCGCA	GGAGGGAGGGGGTGG	CCACACTCAG
chr7:46370884-46371930	902	9.98e-07	AGAGAGGGAA	GGAGGGAGGGAGGGA	GGGAGGGAGG
chr4:135765567-135766186	143	2.28e-06	GGTAAGCCCT	TGGGGCTGGAGATGG	AGTCCTTGCT
chr2:26487449-26488199	491	2.66e-06	CACCAGCGGG	TGGGGCAGGAGCTGG	GAAGCTGGTG
chr16:30063016-30064679	149	3.08e-06	CCATCACAAA	GGGGGGTGGGGGGGG	CTTGCCCAAG
chr9:44078766-44079440	562	3.56e-06	TCTTCCACAC	AGAGGCAGGGACTGA	GTCGTGTCCC
chr3:99254691-99255387	293	3.56e-06	CTACACGGCT	TGGGGGTGGGGGGGA	AGAGTCAGGC
chr13:48227498-48228346	64	3.56e-06	GGAGGAGGGG	GGAAGGAGGAGGAGG	AGGAGGAGGA
chr11:90275464-90276273	768	3.56e-06	ACATGTGGTG	AGAGGGAGGTGAAGG	CGTGCAGCAA
chr11:98671678-98672393	697	4.12e-06	AAAGCATTAG	AGTGGAAGGGAAAGG	CAC
chr10:80940445-80941162	582	4.12e-06	ATATAGGACA	AGAGGAAGGAGAGGG	GGAGGGAGAA
chr4:141423232-141423917	263	4.77e-06	GGGCTGCTCG	TGGGGGAGGGCAGGG	GCCCTGATGT
chr4:43038998-43039732	472	4.77e-06	TGTTAGACCT	GGGAGGTGGGAGAGG	TTGTGGTACA
chr1:92787053-92787745	210	4.77e-06	GCAGGGGCTG	TGGGGAAGGGACAGA	TGTGCAACAA
chr5:125056732-125057346	297	5.48e-06	CTCAAGGACA	GGAGGCAGGGAGGGC	CAGGGCTCAG
chr2:114087212-114087846	63	5.48e-06	AGCAGTTTAA	TGAGGGAGAAAAGGG	TCATTGAAGA
chr8:111710934-111711702	465	7.26e-06	TTCAGCTGTG	GGAGGCAGGACAAGG	TTAGGCTCTC
chr5:125110919-125111688	218	7.26e-06	GGGGGGGTGG	GGAGGTAGGGGGAGA	CAGGAGTAGT
chr8:126583914-126584586	496	8.35e-06	TGGAGGCTCG	TGGAGCAGGAACAGA	GTAGGACAGG
chr19:42016673-42017472	587	1.08e-05	CAGGCTGAGT	GGAGTCAGGAAGAGG	GAAAAGTGAA
chr15:58986361-58987006	337	1.08e-05	TGCAGGCAGC	AGGGGGAGGGCAAGA	AAGTGACCTT
chr15:66891763-66893113	431	1.08e-05	TGCACCTTCC	AGAGACAGGGAAGGA	GACACGTGGC
chr11:61062370-61063082	79	1.08e-05	AACTCTGCCT	GGGAGGTGGAGAAGG	TGACAACATC
chr2:160872202-160873163	416	1.23e-05	CGGGACATCG	GGGGGAAGGGGCGGG	GCCGCTCGGA
chr15:34795064-34795760	655	1.23e-05	TCTTCAGTGG	GGAGGTAGGAAGTGA	TGAATTCTCG
chr15:66883318-66884276	891	1.23e-05	CACAAGCCAC	TTAGGGAGGAAGGGG	TTCATTTCAC
chr1:91413901-91414660	736	1.40e-05	GGAAGACCTT	TGAGGAAGGGAAAGT	ACAAGCAG
chr7:63956821-63957364	181	1.58e-05	CGTCACAGTA	TTGGGGAGGGGGGGG	GTGACACCAT
chr6:108668244-108668981	503	1.58e-05	GAGCGCAGGG	TGGGGTAGGAGCTGG	GTTTAGGCAG
chr6:108668244-108668804	503	1.58e-05	GAGCGCAGGG	TGGGGTAGGAGCTGG	GTTTAGGCAG
chr16:33940969-33942007	823	1.58e-05	GAGAGACAAG	ATAGGCAGGGAGTGG	CCAGGCACCA
chr11:6481396-6482367	284	1.58e-05	AAGAGACAGG	TGTGGGAGGTGAGGG	GAAGGGTGCA
chr15:75757872-75758579	152	1.78e-05	TGGGTGTGTT	TGGAGCAGAGGAAGG	TGGGTGGGGC
chr13:81690312-81691137	113	2.01e-05	AAGACGAGCG	GGAAGCAGGTGGAGG	TGTGTGAGCT
chr19:56939731-56940324	572	2.26e-05	CTGATCATGT	AGAGTCAGGAGAGGG	AGGAGG
chr11:67074879-67075569	75	2.26e-05	GTTTCGTCTC	AGAAACAGGGAATGG	TTTGGGACTA
chr11:59311790-59312990	33	2.26e-05	AACCAAGAGG	TGGGTGAGGGGAGGA	GAGCTCCCTG
chr6:72383040-72383702	28	2.83e-05	CAGAATGGGC	TGGGGGTGAAGAGGG	TAGGCTCACT
chr12:112617839-112618593	450	2.83e-05	GGGCTCACTG	AGGGGGTGGGGGTGC	TAATTCCGGC
chr11:67081014-67081680	299	2.83e-05	CCCAAAGCAG	GGAAGGTGGTAAAGG	AAGTAGGATG
chr15:97811911-97812695	557	3.15e-05	GAGGTGGCCC	TATGGAAGGGAAAGG	ATGAGAATAC
chr13:37130560-37131151	527	3.15e-05	GAGCGGGGCA	GGGGGCAGAGGGGGA	GAATCATGTA
chr11:95533718-95534393	396	3.15e-05	GTCGAAGAGA	TGAGGCTGGGTCAGG	AGCCTGTCAA
chr10:80930116-80930840	589	3.90e-05	ATTTTTTTTG	GGGAGGAGGAAAGAG	AGTCGCTGCA
chr12:17746987-17747690	257	4.33e-05	CTGCCTAGAT	GGAGGCAGTAAGTGG	CCTCCCATTT
chr11:61038023-61038954	848	4.33e-05	GTATCTGAAC	TTAGGCTGGGAGGGA	GGGGTCCTGT
chr7:45460723-45461396	621	4.80e-05	ACTGGGGGAT	TGAGGGTGGAACAAA	AGACCAAGTC
chr1:132370626-132371282	82	4.80e-05	TCATCTGGAG	TGAAGCTGAGAGTGG	CAAGAAGCCA
chr15:68194220-68194869	533	4.80e-05	CAACAGATGC	AGTGGCAGGGCCAGG	CCCTCTCGAT
chr13:62855904-62856806	424	4.80e-05	CAGCTGTTGC	TGGGGCATGAAGAGC	TGAGCAAATG
chr12:27390261-27391004	2	4.80e-05	GT	TGTAACAGGGAGGGG	AAGACTCATC
chr3:145654797-145655492	291	5.87e-05	CGCTCAGGTC	TGATGAAGGAGCAGG	CACGTGAGTT
chr3:88138276-88138625	214	5.87e-05	GAAGTTGGGA	TGGGGGTTGGGGGGA	GCGGAGCAAG
chr1:36469598-36470779	105	5.87e-05	CTGGGTTGTC	AAAGACAGGGAGGGG	GCAATTGCCC
chr12:52671351-52671937	135	5.87e-05	ATGGGAAATG	TGTGGCTGGAGAGGC	CGTCACACAC
chrX:93288108-93288864	148	6.48e-05	AAGAAAAATA	AGGGGGTGCGAAAGG	AGTACTACAA
chr1:39449099-39449934	386	6.48e-05	CAGATAAAAC	AGGATGAGGGACAGG	AAGGTACCTC
chr15:56692195-56692841	126	6.48e-05	TCTGGCTGGG	GAGGGGAGGGGGAGC	TTCCTAGCCA
chr1:91407699-91408223	125	7.14e-05	TTCACACATA	GGAAAGAGGGGATGA	CTCACAAATG
chr4:74251643-74252226	548	7.86e-05	CAGTCAGCTG	GGAGGGAGGAGGCGG	CCCTGACAGT
chr15:77888063-77888703	551	7.86e-05	CCTGTCAGCT	GGGAGGAGGATGTGG	GAAGGCTTCC
chr11:75538249-75538877	431	8.65e-05	TCTGTGGCCA	AGTGGGAGGAGAGAA	GACAGGAGCA
chr15:66877758-66878823	359	9.50e-05	TGCTCCTTCC	TGTAGGAGGGAGTGT	TTCAAGTTAA
chr10:81072192-81072934	657	1.04e-04	TTTTCTGGTG	AGAGGCTGGTCAGGG	TGAAGCCCCA
chr15:25915728-25916468	549	1.14e-04	GGCTGTGGTA	AAATGGAGGGACAGG	GCTGTGCTGA
chr9:94670098-94670696	112	1.25e-04	GCTTCTTGCA	TGAGACTGGAGGGGC	GATGGTGTAT
chr8:120265441-120266019	164	1.25e-04	CTGAGACGCC	TGTGGCTGGGAAAAC	CAGGCCCCCA
chr2:26484919-26485755	76	1.25e-04	TCAGATAGTT	TGGGGTTGAAAAGGA	CCAGAGTTCC
chr13:41545980-41546746	666	1.25e-04	AGGGAAAAAA	TGGTGTAGGGAGAAG	GCCACAGCAG
chr10:93642725-93643326	204	1.25e-04	GGAGCAATCA	AGAGGTTGGGAATAA	AGAGCACTGG
chr8:118249154-118249839	102	1.49e-04	TTGGTCTTGA	AGGGGGATGAAGAAA	TTTAGGGCTA
chr1:170655330-170656359	339	1.49e-04	GCTGTTTAGT	TGGGGGAGGATTTGG	AGCAGCAGCT
chr13:99323556-99324231	390	2.25e-04	AAAATTCTGT	TGGGGGTGGGTGGGT	TATGTAAGTT
chr10:45311444-45312243	508	2.25e-04	GCCATGCTCA	GGGTGGAGAGACAGA	GCCTGGTAGC
chr11:59307629-59308768	683	2.44e-04	GGGCAAGAGG	GAGGGCTGAGGATGG	CCGTCTGGCC
chr13:99210768-99211374	287	2.85e-04	GGGCAGGCAG	TGGGTTTGGGAGAAG	AGGTTCATGG
chr9:21751868-21752893	831	3.08e-04	CCTTGTAGGG	AGTGTGTGGGAGAAG	CTTGGAGCTT
chr3:37128117-37128837	282	3.32e-04	CAGTTTCTTA	AGATGCTTGGGGAGA	AAGCTACCAA
chr15:66885900-66886633	78	3.85e-04	GCACTACCTC	TGAGGCAGTTAGTGC	GGGTGCCTAA
chr1:87203702-87204348	562	4.45e-04	TTGAGGCGAG	GGAAGGGGGGACGGG	ACTAGAGGAA
chr1:91956233-91956817	109	5.12e-04	TCCTGACTTC	AGTGAAAGGGATAGA	TGGGGTTAGG
chr9:57831107-57831838	451	5.49e-04	CTGCCAAGGC	GGGGGCAGCAGCAGC	CTCGGGCCTG
chr15:85698553-85699119	160	5.87e-04	AACACAGTAC	TGTTGAATGGGGTGG	GGACTTGAAC
chr1:177441252-177442123	56	8.14e-04	GTTAGGCACA	AAGAACAGGTAAGGA	AGAAGTTTAT
chr14:46950823-46951599	664	8.14e-04	ATAAACATAA	AAGGAAAGGAAAAGT	TGTGATGAAT
chr8:34679746-34680516	180	1.04e-03	GAAAAAAAAA	GGGTGCTTGTGGTGG	TCATGGAACA
chr11:54331278-54332036	454	1.04e-03	GGCAGCATTC	ATAGGCAGGGCTGGA	AAACTGGTTG
chr2:69673558-69674376	686	1.39e-03	ACTTTAGGAT	TATAGCTGTAAAAGA	TCTTCATTCA
chr13:113262600-113263317	102	2.70e-03	ATGCCTATTT	GGAAAATTGAAATAG	CTGCATGCCT

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:93642725-93643326	1.25e-04
chr10:80930116-80930840	3.90e-05
chr10:81072192-81072934	1.04e-04
chr10:80940445-80941162	4.12e-06
chr10:45311444-45312243	2.25e-04
chr11:75538249-75538877	8.65e-05
chr11:59311790-59312990	2.26e-05
chr11:61038023-61038954	4.33e-05
chr11:6481396-6482367	1.58e-05
chr11:59307629-59308768	2.44e-04
chr11:98671678-98672393	4.12e-06
chr11:90275464-90276273	3.56e-06
chr11:54331278-54332036	1.04e-03
chr11:95533718-95534393	3.15e-05
chr11:67074879-67075569	2.26e-05
chr11:67081014-67081680	2.83e-05
chr11:61062370-61063082	1.08e-05
chr12:52671351-52671937	5.87e-05
chr12:17746987-17747690	4.33e-05
chr12:112617839-112618593	2.83e-05
chr12:27390261-27391004	4.80e-05
chr13:48227498-48228346	3.56e-06
chr13:62855904-62856806	4.80e-05
chr13:37130560-37131151	3.15e-05
chr13:41545980-41546746	1.25e-04
chr13:113262600-113263317	2.70e-03
chr13:99210768-99211374	2.85e-04
chr13:81690312-81691137	2.01e-05
chr13:99323556-99324231	2.25e-04
chr14:46950823-46951599	8.14e-04
chr15:97811911-97812695	3.15e-05
chr15:68194220-68194869	4.80e-05
chr15:66883318-66884276	1.23e-05
chr15:34795064-34795760	1.23e-05
chr15:66891763-66893113	1.08e-05
chr15:56692195-56692841	6.48e-05
chr15:28133135-28133948	1.44e-07
chr15:75757872-75758579	1.78e-05
chr15:77888063-77888703	7.86e-05
chr15:25915728-25916468	1.14e-04
chr15:66885900-66886633	3.85e-04
chr15:85698553-85699119	5.87e-04
chr15:66877758-66878823	9.50e-05
chr15:58986361-58987006	1.08e-05
chr16:33940969-33942007	1.58e-05
chr16:30063016-30064679	3.08e-06
chr19:42016673-42017472	1.08e-05
chr19:56939731-56940324	2.26e-05
chr1:39449099-39449934	6.48e-05
chr1:91413901-91414660	1.40e-05
chr1:87203702-87204348	4.45e-04
chr1:91407699-91408223	7.14e-05
chr1:91956233-91956817	5.12e-04
chr1:170655330-170656359	1.49e-04
chr1:36469598-36470779	5.87e-05
chr1:177441252-177442123	8.14e-04
chr1:92787053-92787745	4.77e-06
chr1:132370626-132371282	4.80e-05
chr2:26502150-26502692	8.31e-07
chr2:26487449-26488199	2.66e-06
chr2:26484919-26485755	1.25e-04
chr2:69673558-69674376	1.39e-03
chr2:160872202-160873163	1.23e-05
chr2:114087212-114087846	5.48e-06
chr3:37128117-37128837	3.32e-04
chr3:87982114-87984371	1.06e-07
chr3:99254691-99255387	3.56e-06
chr3:88150177-88151021	2.86e-07
chr3:88138276-88138625	5.87e-05
chr3:145654797-145655492	5.87e-05
chr4:43038998-43039732	4.77e-06
chr4:135765567-135766186	2.28e-06
chr4:74251643-74252226	7.86e-05
chr4:141423232-141423917	4.77e-06
chr5:125110919-125111688	7.26e-06
chr5:125056732-125057346	5.48e-06
chr6:72383040-72383702	2.83e-05
chr6:108668244-108668804	1.58e-05
chr6:108668244-108668981	1.58e-05
chr7:63956821-63957364	1.58e-05
chr7:46370884-46371930	9.98e-07
chr7:45460723-45461396	4.80e-05
chr8:122636472-122637392	8.56e-08
chr8:34679746-34680516	1.04e-03
chr8:111710934-111711702	7.26e-06
chr8:120265441-120266019	1.25e-04
chr8:126583914-126584586	8.35e-06
chr8:118249154-118249839	1.49e-04
chr9:21751868-21752893	3.08e-04
chr9:44078766-44079440	3.56e-06
chr9:94670098-94670696	1.25e-04
chr9:57831107-57831838	5.49e-04
chrX:93288108-93288864	6.48e-05
		0 500 1000 1500 2000

Time 320.6 secs.

Motif 3

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Summary

Sequence Logo

E-value	4.9e-027
Width	25
Sites	93

Standard Reverse Complement

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Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[CT][CT]C[TA][TCG][TC]C[AT][GT][TC][CT]C[TC][CTG][CAT][CT][CT][CT][TC][CT][TC][CT][TCA]C[ATC]

Further Analysis

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr9:44078766-44079440	463	1.07e-08	GCGCACTTGC	CCCTCCCAGGCCTCACCTCCTCTCC	CCAAGAAGAG
chr3:88150177-88151021	299	1.32e-08	CCTCACTGGC	CCCTTTCTGTCTTCTTCCTCTGTCT	GTGCATCTGT
chr15:66877758-66878823	917	1.62e-08	GCCTTCCTGA	GTCTCTCTTCCCTCTCCCCTTCACT	CCCGGCAGGG
chr1:91413901-91414660	214	1.97e-08	TACCCCCAGT	CCCTCTCAGCTCCTCCCCCTTCTAT	TCTTGGTTCC
chr11:61038023-61038954	468	4.25e-08	GGGAATACAG	CTTAGCCAGTCCCTACCCTCTTTCA	GCTTGTTAGG
chr4:43038998-43039732	512	5.11e-08	AACACCTAGG	CTCATTCTATCCTTCCCTTCACTCT	CAAGACACCC
chr11:59307629-59308768	905	1.46e-07	TGTAATGCCT	CCCATCCATCCCTCTCTCTCACCCT	CGCTTAGCTG
chr15:68194220-68194869	47	1.72e-07	AATGCTGTGA	CCCTTTCATTTCATACAGTTCCTCA	TGTTGCGGTG
chr19:42016673-42017472	440	3.26e-07	GGAGACCGAT	CCCTCTCTGCTCTCCTGCTCACTCC	CGTCTTGGAG
chr15:85698553-85699119	367	5.98e-07	TGATAAGGAC	TCCTCTCAGTTTCCACTCTGTCACA	GCCCTGCCCT
chr12:52671351-52671937	358	5.98e-07	CCTCCTTGCA	CCCTCCCTGCCCCCTCCCGTCCCCG	TCCCCCAGCC
chr8:126583914-126584586	125	6.93e-07	TTCACAAATC	CCCCTCCTTCCCCCAACCTCCCCCC	CTCCCCCAGC
chr3:87982114-87984371	2051	6.93e-07	GAACCCCAGG	TCCTGGCACTTCTTCTTCCCTTTCA	GAGTCCCCTT
chr13:113262600-113263317	130	6.93e-07	CATGCCTGTT	TCCTTTCTATCCATTCTCATTTCCT	TTCTAGGCTC
chr10:80940445-80941162	622	6.93e-07	GTGAAGGTGC	CTCTCTCAGACCCTCTGCTCTCTCC	AGCCTGCCTG
chr10:45311444-45312243	384	9.24e-07	CATCACCTGC	TCCTGTCAGTTCCCCCTCTTCTAAT	AAACTGCATC
chr13:41545980-41546746	441	1.06e-06	TCTCTGCAAA	CCCAGACTGCCCTTTTCCTCTCTTC	TCTTCAAGAA
chr9:21751868-21752893	268	1.22e-06	GTCAGGGTCC	CCTTTTCTGCTCTCCCGTCTTCTTT	GCCTGCAGTT
chr3:88138276-88138625	26	1.61e-06	GTCTCTGCAA	TTCTTCCTGTTCCTATAGTTTCTAA	CACCCCACTT
chr11:6481396-6482367	617	1.61e-06	TTCCTGGAGA	TTCTGTCTCCCCTGAACCTTCCAGA	AGGCCTGTTG
chr11:75538249-75538877	174	1.84e-06	CCCTTCCGGG	CTCTGGCAGCCGAGTCCTCTTCTCA	GCACACTGGC
chr6:72383040-72383702	157	2.72e-06	CCACATTTTT	GACTCTCAACCCATCCCTTTCCTCA	CATGCTCCCA
chr12:17746987-17747690	481	3.09e-06	CCCGACCACT	TCCTTCCTGTGGTCATCCCCCTCCA	GAAATCTGGA
chr2:160872202-160873163	33	3.51e-06	AGCCCCACAC	CCCACCCACTCCCCAATCACTTCCA	ACAGGTTTCT
chr1:92787053-92787745	57	3.51e-06	ACCAAGGTCA	TCCTGCCAGCCTCTTCCTTCTGACG	CTTTGAGGCC
chr15:66891763-66893113	362	3.51e-06	CCTCCATGGT	CTGTTCCTGTCCTGCCATTTCCAGA	AGGCATCTGG
chr5:125056732-125057346	54	3.98e-06	CTACATGGCT	TTGAGTCAGTCTTGCCCCTCCCCCA	CACCCTGGTC
chr1:177441252-177442123	819	3.98e-06	GGTCGAGCTG	CCCCGTCAGTCCCGCCGCTTCTCCG	CCCTCCCGGA
chr1:170655330-170656359	778	3.98e-06	TATCCCAGGA	TCCTTTCTTTCCAGCCTGCCTCAGC	CATACCATCC
chr8:34679746-34680516	118	4.50e-06	GGGAGCGAGC	TTCATTTATCTTTTATCCCCCCTCA	CAATAGCCCA
chr5:125110919-125111688	572	4.50e-06	CCACTTGTCC	CCTTCGCTCTCCCTGTCCACTCTCA	GCCCAGTACT
chr13:62855904-62856806	229	4.50e-06	TGACGGCGTC	CCCTCCCACTTTACTCCCATCCAGA	ATTTGATGTA
chr9:94670098-94670696	459	5.73e-06	TGGCAATGCA	GTCAGTCAGCGCAGCCTCTTCCACA	GGCAGCCAGA
chr15:75757872-75758579	108	5.73e-06	CTGGGGCTCT	GCCTGTCTGCTCTGTCTGCTTGTCT	CTTCTCCAGT
chr8:120265441-120266019	16	6.46e-06	TTCCAGAATC	ATCCTCCTGTTCCCCACTTTCTCCA	GCTTCCTCAC
chr3:99254691-99255387	607	7.26e-06	GGAGATTTAT	TTCATCCATCCACGACTTTCTCTCT	TTGGGAGCAA
chr12:112617839-112618593	119	8.16e-06	GGACGGAGAG	CACTGCCTCCCCAGCCTTCCTCCCC	ATTGCTTTCT
chr3:145654797-145655492	105	1.03e-05	AGCACTATTT	ACTTGACAGTCGTCCCCCCCTCACA	TATTGATATA
chr16:33940969-33942007	935	1.03e-05	CCCCAAGGCT	TCCAGCCAGTGTTGCTCCCTTCTGC	TGCTCAGGGC
chr15:34795064-34795760	488	1.03e-05	CCTGGCTTAA	CCCTCACTGTCCTCCTGTACTTTGC	CTGAGGGACA
chr11:61062370-61063082	319	1.03e-05	ATCTGTGCCA	CTCATCCAACCCCGCCCCCTGTACT	CATTCATTCA
chr15:97811911-97812695	168	1.15e-05	GGGCCTCCCA	CACCCTCAGCTGCCACTCTCTCCCT	CCCATTTTCT
chr12:27390261-27391004	279	1.15e-05	TGTGGCTATA	CTTGCCCTGCCCTGCCCTTCCCTGA	CACCTGCCCT
chr15:66883318-66884276	407	1.28e-05	GCCAAGCCAT	ATCTGGCTCCTCCTAGCCTTCCTCA	CATCTACTTC
chr11:59311790-59312990	314	1.43e-05	CCAAGCCCAG	CCCCCGCACCCTCCCCCCCCCCAGA	CTAGGATGCA
chr8:118249154-118249839	528	1.60e-05	CATGTCATCT	TCCCCTCAGGTCTCTGTCATCCTCT	GTAGTTACAG
chr2:69673558-69674376	444	1.60e-05	TGCATAGACA	CCCTGTCTTTCCCCAGTGTCCCAAA	AGTATTAAGA
chr8:122636472-122637392	842	1.78e-05	TGTCGCTGTG	CCCACCCATGGCTGCCCCACTCATA	CTCCTTGGAC
chr4:135765567-135766186	160	1.78e-05	GGAGATGGAG	TCCTTGCTCTCCCGCCATTTCTCTT	GGAGTTCTGG
chr15:56692195-56692841	609	1.78e-05	CGCCTCTGTC	GCCACGAAGTTCTCACCCTTACACA	GACCCTCCTT
chr13:48227498-48228346	528	1.78e-05	ACTCCGCTGG	CTCCTCCAGCCCTTGCCGCCCGCCC	GGCTCCTTGA
chr1:87203702-87204348	528	1.98e-05	CAGTGTAGCA	CACTTTCTCTTCTCTTCCAGACTCT	TGAGGCGAGG
chr15:58986361-58987006	416	2.19e-05	GGGGTAGGGT	CTCTGCCTCTACTCTTCCATCCTAT	ATAGCAAGTC
chr15:66885900-66886633	203	2.19e-05	GCTTTCATCT	ACCTCTCTGTCCATCTTTCCCGAGT	TCCCTAGAAC
chr13:99210768-99211374	63	2.19e-05	GATGTAAACA	TCTTTTCATCGGCTATTCTCTTTCT	AATTTTATGT
chr10:80930116-80930840	28	2.19e-05	TTTTGCAATC	TTCTTTTTACCCCTACTTTTTTCTT	GGGAAGGGAA
chr9:57831107-57831838	704	2.70e-05	CAAGTGATCT	GTCTCCCAGTACCTTCTCTGCTTCA	AA
chr1:36469598-36470779	308	2.70e-05	ATTAAGTCAG	CCTCTGCTACCCAGCCTCCCCCACA	ACACTGCATG
chr16:30063016-30064679	1575	2.70e-05	GCTATCAAAG	CCCCCCTTGTTCATTTTTTTTTTCG	TTTGAAATTC
chr4:141423232-141423917	400	2.99e-05	CTTATTGAGC	CCCACCCAGCCCCATCCTATACCCA	GCTTCCCTGG
chr13:37130560-37131151	462	3.65e-05	CTATTGTAGT	TTCTTTCACTTCTGCCAGAATTTCA	AATGTTTGCT
chr11:95533718-95534393	471	3.65e-05	TCACAGCCAG	GTCTCTCTGGCTCTTCCTGCTCTGC	AGTCTTTGCC
chr11:67081014-67081680	584	4.43e-05	GCTACAGTGC	CTCTCTCATTCTCTGTTGTTTCCGG	TCAGCCCTGC
chr1:132370626-132371282	588	5.37e-05	AATAAAACAA	ATCATGCTATTTACTTTTTTTCTCT	CTTAAAAATA
chr15:77888063-77888703	165	5.37e-05	GCCAAGCAGC	TTTATCCTGACCCGACTCCCCTCCC	CCAACCTCTG
chr10:93642725-93643326	54	5.90e-05	GTCCACACTC	CCCCTACTTTTCATAAACCTTTCCC	TTTTCAAGTC
chr1:39449099-39449934	31	7.77e-05	AACCCTAGGG	TCTTTCAACTCTCCCTCCATACACA	CCTCACATGA
chr11:98671678-98672393	592	7.77e-05	TTCTTATTGT	TCTATTTACCTCTTATTTTCTCAGT	GATCCAGGCA
chr7:46370884-46371930	287	8.50e-05	CCGTGGTTTC	ATCCTCCAGTCCTTCAGCCCCCTAG	ACCCAAGCCA
chr11:54331278-54332036	623	9.30e-05	CGTGTTGTGC	CTCTTGCATTCATCCTCTTGTCAGC	ATGTCACCCA
chr19:56939731-56940324	27	1.02e-04	GCCCCTTGGG	GTCTCTTATCTCAGCTACTCACTCC	TAAGCTCCAT
chr2:26502150-26502692	153	1.11e-04	CAGCAAAGCC	CCCCGACAAGCCTCCACCCTTGCCT	CAGTTCAAAC
chr6:108668244-108668981	566	1.21e-04	GGATAGACAA	GCTTCCCACGGCTCATCCCTCCCTA	ATGCAGGTCT
chr14:46950823-46951599	212	1.21e-04	CTCCTGTTCT	TCCTTCCTTCCTGGAAGCCTTCTCA	ATCCCCAAAG
chr7:45460723-45461396	646	1.32e-04	AGACCAAGTC	CCCTTAAAATGGCTTCCTCTTCCCT	TC
chr4:74251643-74252226	7	1.32e-04	CCTTCTG	CTTCGTCAGTGTTTTTCCTCCTTTG	AGAAAGAAGA
chr15:28133135-28133948	571	1.32e-04	CAGGAATCTC	CTCCCCAATCCTCCTTCGCTACTCT	GCATTCCTGG
chrX:93288108-93288864	417	1.43e-04	GCGCTGACCA	CTTTTCCTTGCCCGCAGGCTCCCCC	AAGAGCAGCA
chr10:81072192-81072934	30	1.43e-04	GGTGGCAGCC	CCTTTTCTTTTCCTTGCCAGCCCAT	CTTCAGGGCC
chr15:25915728-25916468	516	1.56e-04	TCCTGTGAGA	TCCATCATTTCTTTCTCTCCTGTGG	CTGTGGTAAA
chr6:108668244-108668804	235	1.69e-04	CCGGGATGGT	CTCACCCAGCGCTGACCTGCCGCGC	CTGTTGACAA
chr8:111710934-111711702	148	3.42e-04	CATCAGCTGC	CTTTGCCTGCCGTGACAGTGTGTCC	CCAATGAACA
chr2:26484919-26485755	251	3.42e-04	AGTTCACAAC	CTCCTATAGCCCTTACCTGACCACC	CTGGTGGGCA
chr2:26487449-26488199	232	3.68e-04	TCCAAGCTTG	CTCACATTCCTCTTCCCTCCGGCCA	TGGGCTGTGT
chr13:81690312-81691137	449	4.26e-04	CAGAGCACGT	GCGTGGCAGCTCATGCACATTCACA	TGAGAATGAG
chr11:67074879-67075569	23	4.26e-04	AAGAGCTTTG	GACTCTCTTTGCTTGAATTCCTTCC	TGGCTCAGGG
chr3:37128117-37128837	134	4.57e-04	TGGGCTCAAC	ATCTCTATTTCTCCAGCTGTTTCCA	TTAGAGAAAT
chr11:90275464-90276273	468	4.91e-04	TGGCTACCCT	CTTGGTTTGGCCTCTGCTTCTCCCT	CGGGCACCGC
chr2:114087212-114087846	290	5.26e-04	TGATGCAGAT	GCCTGCCTCGCCTCCCTCTTGGCTG	GTGGCAGTCA
chr13:99323556-99324231	149	5.26e-04	CACAGAGTGC	CCCACCCTGGCCTCGCGGCTTTCAG	ATGTATCTGC
chr7:63956821-63957364	50	6.47e-04	CTTAAAGTAC	GTGTTTCTTTCCTCTCCTAAGCTTA	CAATCACTGT
chr1:91407699-91408223	255	1.02e-03	ACTCTGACTG	CACAGCAAGGCGTCACACCCTCAGC	CACTGGTGGC
chr1:91956233-91956817	325	1.46e-03	CATATCAGAG	TTCCTGCATATCAGATATTTACATT	ACGATTCATA

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:93642725-93643326	5.90e-05
chr10:80930116-80930840	2.19e-05
chr10:81072192-81072934	1.43e-04
chr10:80940445-80941162	6.93e-07
chr10:45311444-45312243	9.24e-07
chr11:75538249-75538877	1.84e-06
chr11:59311790-59312990	1.43e-05
chr11:61038023-61038954	4.25e-08
chr11:6481396-6482367	1.61e-06
chr11:59307629-59308768	1.46e-07
chr11:98671678-98672393	7.77e-05
chr11:90275464-90276273	4.91e-04
chr11:54331278-54332036	9.30e-05
chr11:95533718-95534393	3.65e-05
chr11:67074879-67075569	4.26e-04
chr11:67081014-67081680	4.43e-05
chr11:61062370-61063082	1.03e-05
chr12:52671351-52671937	5.98e-07
chr12:17746987-17747690	3.09e-06
chr12:112617839-112618593	8.16e-06
chr12:27390261-27391004	1.15e-05
chr13:48227498-48228346	1.78e-05
chr13:62855904-62856806	4.50e-06
chr13:37130560-37131151	3.65e-05
chr13:41545980-41546746	1.06e-06
chr13:113262600-113263317	6.93e-07
chr13:99210768-99211374	2.19e-05
chr13:81690312-81691137	4.26e-04
chr13:99323556-99324231	5.26e-04
chr14:46950823-46951599	1.21e-04
chr15:97811911-97812695	1.15e-05
chr15:68194220-68194869	1.72e-07
chr15:66883318-66884276	1.28e-05
chr15:34795064-34795760	1.03e-05
chr15:66891763-66893113	3.51e-06
chr15:56692195-56692841	1.78e-05
chr15:28133135-28133948	1.32e-04
chr15:75757872-75758579	5.73e-06
chr15:77888063-77888703	5.37e-05
chr15:25915728-25916468	1.56e-04
chr15:66885900-66886633	2.19e-05
chr15:85698553-85699119	5.98e-07
chr15:66877758-66878823	1.62e-08
chr15:58986361-58987006	2.19e-05
chr16:33940969-33942007	1.03e-05
chr16:30063016-30064679	2.70e-05
chr19:42016673-42017472	3.26e-07
chr19:56939731-56940324	1.02e-04
chr1:39449099-39449934	7.77e-05
chr1:91413901-91414660	1.97e-08
chr1:87203702-87204348	1.98e-05
chr1:91407699-91408223	1.02e-03
chr1:91956233-91956817	1.46e-03
chr1:170655330-170656359	3.98e-06
chr1:36469598-36470779	2.70e-05
chr1:177441252-177442123	3.98e-06
chr1:92787053-92787745	3.51e-06
chr1:132370626-132371282	5.37e-05
chr2:26502150-26502692	1.11e-04
chr2:26487449-26488199	3.68e-04
chr2:26484919-26485755	3.42e-04
chr2:69673558-69674376	1.60e-05
chr2:160872202-160873163	3.51e-06
chr2:114087212-114087846	5.26e-04
chr3:37128117-37128837	4.57e-04
chr3:87982114-87984371	6.93e-07
chr3:99254691-99255387	7.26e-06
chr3:88150177-88151021	1.32e-08
chr3:88138276-88138625	1.61e-06
chr3:145654797-145655492	1.03e-05
chr4:43038998-43039732	5.11e-08
chr4:135765567-135766186	1.78e-05
chr4:74251643-74252226	1.32e-04
chr4:141423232-141423917	2.99e-05
chr5:125110919-125111688	4.50e-06
chr5:125056732-125057346	3.98e-06
chr6:72383040-72383702	2.72e-06
chr6:108668244-108668804	1.69e-04
chr6:108668244-108668981	1.21e-04
chr7:63956821-63957364	6.47e-04
chr7:46370884-46371930	8.50e-05
chr7:45460723-45461396	1.32e-04
chr8:122636472-122637392	1.78e-05
chr8:34679746-34680516	4.50e-06
chr8:111710934-111711702	3.42e-04
chr8:120265441-120266019	6.46e-06
chr8:126583914-126584586	6.93e-07
chr8:118249154-118249839	1.60e-05
chr9:21751868-21752893	1.22e-06
chr9:44078766-44079440	1.07e-08
chr9:94670098-94670696	5.73e-06
chr9:57831107-57831838	2.70e-05
chrX:93288108-93288864	1.43e-04
		0 500 1000 1500 2000

Time 476.1 secs.

Motif 4

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Summary

Sequence Logo

E-value	8.5e-015
Width	21
Sites	26

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

A[AT][AT][TA][AT][AT]AA[AT]A[AG][AG]AAA[AG]AAAAA

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr1:36469598-36470779	1080	1.03e-13	ACCTTGTCTC	AAAAAAAAAAAAAAAAAAAAA	CAAACAAAAA
chr13:62855904-62856806	52	1.03e-13	AAGGGGTGGC	AAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAG
chr15:66883318-66884276	222	1.69e-11	TGCTCTTGCC	AAATTAAAAAAAAAAAAAAAT	CCTATCTGCA
chr10:93642725-93643326	410	2.03e-11	TTTGACGTGG	AATTAAAAAAGAAAAGAAAAA	TAATGCCCGA
chrX:93288108-93288864	270	2.29e-10	AGAAAAAATG	AATCAGAAAAAAAAAAAAAAA	GAATCCGGAA
chr13:81690312-81691137	47	2.00e-09	TTCATGAAAA	AAATTAATAACAAAAAAAAAA	TTTAAGTGGC
chr7:46370884-46371930	962	2.94e-09	AGGAAGGAAG	AAAGAAAGAAAGAAAGAAAGA	AAGAAAGAAA
chr2:26484919-26485755	751	1.93e-08	AACCTCACCT	CAATAAAAAAGAAATAATAAT	GACTGTTAAT
chr12:27390261-27391004	112	2.96e-08	TGGTGGTGAT	AAATAAAATGGAAAAGAAATC	TGGAGATATT
chr13:37130560-37131151	158	4.46e-08	TGTCATTAGG	AATCTTAAATGGAAAAAAATA	AGACCGTATT
chr1:132370626-132371282	613	8.05e-08	TTTTTTCTCT	CTTAAAAATAAAATAAATAGA	GTTGGGCATA
chr15:77888063-77888703	131	2.40e-07	AGATAGATAG	ATAGATAGATAGATAGATAAA	ATAGCCAAGC
chr12:17746987-17747690	64	3.09e-07	GAAAGTTGGC	AAAAATATAGGACAAAAAAGT	CACTGAAGGC
chr11:6481396-6482367	190	4.30e-07	TTGGATACAT	ATTTGTTGAAGAAAAAAAAAA	GCTGAAACTT
chr3:99254691-99255387	583	4.67e-07	TAGTCGATGA	AAAGAAAATTAAAAGGAGATT	TATTTCATCC
chr3:145654797-145655492	135	1.09e-06	TCACATATTG	ATATAAAATCAGATCTATAAA	CCAAAAGACT
chr2:69673558-69674376	719	1.17e-06	CATCTCTGTA	AATTTTAAACAAAACATGAAA	CATTGAGAAC
chr11:90275464-90276273	579	1.17e-06	TCGAGACAGC	CTTAACAAAAAAAAAAATCTT	GCTTTTGACT
chr10:45311444-45312243	125	1.26e-06	TTTAAGAGAA	AAACTGAATAAACTGGAAAAA	ACTGGATGAC
chr8:34679746-34680516	475	1.46e-06	ATGGGCTTGG	CTATAAAAAGCAAATTAAACA	GCCATTGTTC
chr11:98671678-98672393	258	1.46e-06	CAGTTCCAAT	AAAAACAATAGGATGGAGAGA	TCTGTAGACA
chr11:59307629-59308768	451	1.68e-06	GGTGTATCCT	GTTCTCAAAGAAAATAAAATA	TTTTCATGGG
chr13:48227498-48228346	225	2.07e-06	GGAAAGCAGG	AAAGCTAAAGAGAAAGAAACC	CAGCCGGCGT
chr6:72383040-72383702	474	2.54e-06	AAAAGCAAGG	ATAGACAAAAGACAAACAGAA	CAACCCACAA
chr13:99323556-99324231	470	2.71e-06	CACCCATTTT	TAAAACAGACCAAACAAAAGA	GAGCCCCCAT
chr8:122636472-122637392	101	2.90e-06	TTCTTGCATC	ATAAGTAGTTAGAAAGAAAAG	CCCCAAGCTG

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:93642725-93643326	2.03e-11
chr10:45311444-45312243	1.26e-06
chr11:6481396-6482367	4.30e-07
chr11:59307629-59308768	1.68e-06
chr11:98671678-98672393	1.46e-06
chr11:90275464-90276273	1.17e-06
chr12:17746987-17747690	3.09e-07
chr12:27390261-27391004	2.96e-08
chr13:48227498-48228346	2.07e-06
chr13:62855904-62856806	1.03e-13
chr13:37130560-37131151	4.46e-08
chr13:81690312-81691137	2.00e-09
chr13:99323556-99324231	2.71e-06
chr15:66883318-66884276	1.69e-11
chr15:77888063-77888703	2.40e-07
chr1:36469598-36470779	1.03e-13
chr1:132370626-132371282	8.05e-08
chr2:26484919-26485755	1.93e-08
chr2:69673558-69674376	1.17e-06
chr3:99254691-99255387	4.67e-07
chr3:145654797-145655492	1.09e-06
chr6:72383040-72383702	2.54e-06
chr7:46370884-46371930	2.94e-09
chr8:122636472-122637392	2.90e-06
chr8:34679746-34680516	1.46e-06
chrX:93288108-93288864	2.29e-10
		0 200 400 600 800 1000

Time 627.3 secs.

Motif 5

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Summary

Sequence Logo

E-value	1.2e-005
Width	25
Sites	22

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[TA][TG][TC]TT[TG][TA][TA][TA][TG]T[TA]TT[TAC][TG][GCT][TC][TC][TA]T[CAG]A[TA][TA]

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr13:99210768-99211374	117	3.91e-14	GGTATATGTG	TTTTTTTTTTTTTTATGTATTCATT	CTATCCAATT
chr19:42016673-42017472	48	1.35e-11	ATTTCAAAAC	TGCTTTTTTTTTTTTTTTTTAAATT	TAATGTTCTA
chr1:132370626-132371282	556	1.15e-09	TTTCTTTAAG	ATTTTTGTTTTTCTCTGCCTTAAAT	AAAACAAATC
chr2:69673558-69674376	600	2.38e-09	GTTTTGTATT	TGCTTTTGTTTATTTTATTTTTATA	AGCCAAGTAG
chr15:77888063-77888703	231	2.67e-09	GGTTGTTTTG	TTTTGTTTTGTTTTGTCTTATCCTT	TTCAGAATTC
chr15:66885900-66886633	677	5.30e-09	CAGAACAGGC	ATCTTTTTTTTTTCCTGCTATAAAA	GGTGAAAGAA
chr11:90275464-90276273	87	1.12e-08	TGGTCTTAGA	TTTTTTTTTTAACATTGTAATCAAT	GTCTAGTTGA
chr10:80930116-80930840	636	1.87e-08	CGCAAGTTTG	AGGTTTTGTGTTTTTTGTTTTGACA	AGGCAACCCC
chr1:91407699-91408223	91	3.69e-08	CGCAAACAGG	TGTTTTGTTGTTGTTGTTGTTGAAT	TCACACATAG
chr11:54331278-54332036	26	9.10e-08	GGTTTCAGGA	TTTTTTAAACTATATTTTATTAAAT	TCTTTCAGAA
chr9:94670098-94670696	37	9.92e-08	TGGAGCTACT	CGCGTTTAATTTTTTGCTCATCCTT	ACCATTTTAA
chr3:145654797-145655492	161	9.92e-08	ATAAACCAAA	AGACTGTTTTTTTAATTTTCTAAAT	GCCAGGTTTA
chr11:59307629-59308768	491	1.51e-07	GAAATTTTCC	CTTTGTGTTTTTCTTTCTCCTCCTT	TCTCCTCCGT
chr15:28133135-28133948	183	1.78e-07	TTCCAAGGTT	TGGTTTAATGAATTAGATTTTCATT	AGAGCCCTGA
chr11:6481396-6482367	109	2.27e-07	TAGAAAGAAA	ATTGTTATTTTTTTAGCTAATGTTG	AGTTTTGAGA
chr7:46370884-46371930	809	2.87e-07	TTTATTTCGG	TTTTTGTTATTTGTGTGCTTGCTTT	GCTTTGCTTT
chr16:33940969-33942007	287	2.87e-07	CGAGCGTGGG	GGCTTTGGATTTTTCTGCTCTATTT	ATACTGATAA
chr1:87203702-87204348	157	3.10e-07	ACAGATCGAC	TTCTTGTTGTTATTAGTTGATTAAT	GAAGCCTGGC
chr13:41545980-41546746	28	3.34e-07	TTCTGTGTGT	TGGGTTTAAGTTTTCTGACATCTTT	TCTTGAACAA
chr11:67074879-67075569	603	4.52e-07	TAACGAGAAA	ATTCTGAGATTTTTCTCTTTAGATA	GACACCTTAA
chr9:21751868-21752893	13	6.97e-07	CCTGGGCTTC	AGCTTTTATTTTCAAGGCCCTGCAA	AGCCAAGTGT
chr15:58986361-58987006	132	7.47e-07	TGAAAAGGAA	ATCTTGATTGCTTTGTCACTTCAAA	TTCCGACATC

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:80930116-80930840	1.87e-08
chr11:6481396-6482367	2.27e-07
chr11:59307629-59308768	1.51e-07
chr11:90275464-90276273	1.12e-08
chr11:54331278-54332036	9.10e-08
chr11:67074879-67075569	4.52e-07
chr13:41545980-41546746	3.34e-07
chr13:99210768-99211374	3.91e-14
chr15:28133135-28133948	1.78e-07
chr15:77888063-77888703	2.67e-09
chr15:66885900-66886633	5.30e-09
chr15:58986361-58987006	7.47e-07
chr16:33940969-33942007	2.87e-07
chr19:42016673-42017472	1.35e-11
chr1:87203702-87204348	3.10e-07
chr1:91407699-91408223	3.69e-08
chr1:132370626-132371282	1.15e-09
chr2:69673558-69674376	2.38e-09
chr3:145654797-145655492	9.92e-08
chr7:46370884-46371930	2.87e-07
chr9:21751868-21752893	6.97e-07
chr9:94670098-94670696	9.92e-08
		0 200 400 600 800 1000

Time 777 secs.

Motif 6

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Summary

Sequence Logo

E-value	6.3e-006
Width	11
Sites	93

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

C[AT][GA][AG][AG][GAC][AG]GCCA

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr11:61062370-61063082	26	4.77e-07	CAATCCCAGC	CAGAAAAGCCA	GTGTGACAAA
chr11:98671678-98672393	49	4.77e-07	TTTGTGTTTT	CAGAAAAGCCA	GGAGAAGGGA
chr19:42016673-42017472	187	7.25e-07	GTTTTCTTGC	CAGAACAGCCA	CACAGTCTAG
chr9:94670098-94670696	490	1.33e-06	CACAGGCAGC	CAGAGGAGCCA	GGCAAAGTTA
chr9:21751868-21752893	876	3.95e-06	GTCTCTTACT	CAGCAGAGCCA	CTGGCTGTCT
chr15:66891763-66893113	1153	3.95e-06	GAATTGGTGA	CAGGGGAGCCA	GCATCAGAGT
chr4:135765567-135766186	362	6.47e-06	CTGGAGCCCC	CTGGAGAGCCA	GCCCTTGTAA
chr2:26484919-26485755	51	6.47e-06	GGTCCTGGAA	CAGGGCAGCCA	AAAATCAGAT
chr16:33940969-33942007	528	6.47e-06	ATCATTGGAG	CTGAGGAGCCA	GGCAGGCAGC
chr11:54331278-54332036	676	6.47e-06	CTCGATGTCA	CAGCACAGCCA	CATGCTTTCT
chr15:97811911-97812695	495	1.07e-05	GCTGGCCAGG	CTGAGCAGCCA	GGGATGCAGA
chr15:66885900-66886633	344	1.21e-05	GCTGCCAAGT	CAAAGCAGCCA	GAAGCCAAGA
chr4:141423232-141423917	303	1.42e-05	CTCAGGGTGC	CTGGGGAGCCA	GAGGGCACAG
chr1:177441252-177442123	422	1.42e-05	GCGAGCACCG	CAGGAGGGCCA	GACCCAGCGG
chr11:61038023-61038954	244	1.42e-05	AGGCATAGAG	CAGGAGGGCCA	TTCTCTGTTG
chr7:45460723-45461396	183	1.64e-05	TAAGATGGGT	CAAGGGAGCCA	CGCGGAGCAG
chr12:112617839-112618593	381	1.64e-05	GGTCACACAG	CTGCAAAGCCA	GACTCCCCCC
chr1:91956233-91956817	161	1.77e-05	GCTGCTATGT	CAACAAAGCCA	TCTGAGTAAT
chr5:125110919-125111688	494	2.09e-05	CAACTGCAGC	CTGGGCAGCCA	GGTGCCCCCA
chr15:25915728-25916468	213	2.09e-05	CATTTGATTT	GAGAAGAGCCA	CTGATCCGAA
chr8:118249154-118249839	628	2.40e-05	GATCCCATTG	GAGAAAAGCCA	GTCATGTGGA
chr5:125056732-125057346	247	2.71e-05	CTACAGTGAC	CACAAGAGCCA	CGTGGCTCCA
chr3:87982114-87984371	350	2.71e-05	AGACCGGACA	CAGGACAGGCA	TGTCCCAGGG
chr2:26487449-26488199	682	2.71e-05	GCTGGAGGAC	CAGCAGGGCCA	CTTGGATGGG
chr15:68194220-68194869	618	2.71e-05	GGTTCTTGTT	CTGAAGAGGCA	AGTCTCTGTT
chr13:81690312-81691137	316	2.71e-05	GGACGGTTCA	CTAAGAAGCCA	AGAAAAGCTA
chr8:120265441-120266019	112	3.13e-05	AGGCTCATGG	GAGAACAGCCA	AGCCTTTGTG
chr6:72383040-72383702	461	3.13e-05	TATAAAGACC	CAGAAAAGCAA	GGATAGACAA
chr11:95533718-95534393	551	3.44e-05	CTCGAAGAAG	CTGAAAAGCCT	TGTGAGCTGT
chr1:92787053-92787745	319	3.95e-05	TGGAGGCTCC	CAAAATAGCCA	GGGTGCGGCT
chr15:75757872-75758579	231	3.95e-05	CCCAGGCTAG	CAGGGAAGGCA	GGTCGGCTGA
chr7:46370884-46371930	586	4.46e-05	AGGGGGAAAT	CAAAGGGGCCA	CCTATGGCGG
chr15:28133135-28133948	272	4.46e-05	AACCAAAGAC	CTAGGGAGCCA	ACTACAGGGT
chr11:6481396-6482367	754	4.46e-05	TACTGAGCAC	GAGGAAAGCCA	TGTGGCAAGG
chr11:59311790-59312990	977	4.46e-05	TCTCTGTAGT	CAGGGAAGCCT	CTGGCATGAA
chr1:87203702-87204348	242	4.96e-05	CCCTTGGGTG	CTGAGGAGGCA	TCACTGGTTA
chr16:30063016-30064679	412	4.96e-05	GGGTGGAGGC	CAGGGCAGGCA	GGAGGGAGGC
chr1:39449099-39449934	427	5.69e-05	ACAGAGCAGA	CAGAGAAGCAA	CTGAGCCAGG
chr9:44078766-44079440	490	6.32e-05	TCCTCTCCCC	AAGAAGAGCCA	CGGGTTGGCC
chr13:41545980-41546746	315	6.32e-05	AGGGTATTAA	CTGTGAAGCCA	ACAGTGGATT
chr6:108668244-108668981	77	7.09e-05	CAGTTGGGGA	CAAAGAAGCCT	CTGTTTAAAA
chr6:108668244-108668804	77	7.09e-05	CAGTTGGGGA	CAAAGAAGCCT	CTGTTTAAAA
chr13:48227498-48228346	599	7.09e-05	CCCTGGCTTC	CTGCAGGGCCA	CGAGCTGGGG
chr12:27390261-27391004	393	7.09e-05	CTCTGGTGTC	CTGCAGGGCCA	GGGTGGCCTC
chr9:57831107-57831838	207	7.91e-05	GAGCACTGAG	CTGTGCAGCCA	CGGGGCAGCT
chr13:99323556-99324231	617	7.91e-05	GTTTGTCATT	CAAAAGAGCAA	GCCAAGCCTC
chr15:66883318-66884276	872	8.74e-05	TGTCATAAAA	CACCAGAGCCA	CAAGCCACTT
chrX:93288108-93288864	635	9.81e-05	CCACCACCAG	CTGCACGGCCA	GGGGAGCGTC
chr15:66877758-66878823	958	9.81e-05	AGGGGCCAAG	CAGAGAGGGCA	ATCCAGGCTC
chr10:81072192-81072934	591	9.81e-05	CTTACACTTC	CAGGAGGGCCT	TTGCCAAAGC
chr15:34795064-34795760	455	1.19e-04	AAGAGAGAAG	GAAGAAAGCCA	GGCCCAGAGG
chr13:99210768-99211374	275	1.19e-04	ATTCAAACAA	CTGGGCAGGCA	GTGGGTTTGG
chr11:59307629-59308768	1113	1.33e-04	CTCTCTGTTG	CAGAGGACCCA	TTAAGGAAAG
chr8:111710934-111711702	601	1.62e-04	TGGGAGTGCA	CAGGAAAGACA	GCATCACCAG
chr15:56692195-56692841	214	1.62e-04	AATGCAATCC	CAGCCCAGCCA	CGTGGGTTGA
chr8:34679746-34680516	401	1.77e-04	CTCCACAGAG	CAGATGGGCCA	GCCCTCAGGG
chr3:88150177-88151021	492	1.77e-04	CAGCTGTCTT	CAGTGCAGCCT	GCCTTCCCGA
chr3:99254691-99255387	99	1.77e-04	TTCAACAGTG	CAAAACAGCCC	GGGGGAACAG
chr13:62855904-62856806	75	1.77e-04	AAAAAAAAAA	AAAAAAAGCCA	TTTGCCCTCT
chr4:74251643-74252226	533	1.95e-04	CTCCGCGGTG	CAAAGCAGTCA	GCTGGGAGGG
chr15:58986361-58987006	562	1.95e-04	CAGCCAATTA	CAAAAGACCCA	CAATCCAATT
chr10:80940445-80941162	138	1.95e-04	AAGCTCTGTG	CAGGGCAGCCC	CCTCTCCTAC
chr11:67081014-67081680	52	2.14e-04	TGAGAAGCGG	CAAGAGAGCCC	ACGGCCCAAG
chr8:126583914-126584586	227	2.34e-04	CCCCCCTCGC	CAGACAAGCCT	TTGACTTTAT
chr12:17746987-17747690	163	2.34e-04	GCTTGCACAC	CAGAGAGGTCA	CTATGGCCAG
chr2:160872202-160873163	86	2.56e-04	AAACCCCAAA	CTGGAGAGGCT	TCCCAGGTCC
chr10:45311444-45312243	625	2.56e-04	GCATGCCCTC	CAGACCAGGCA	TTTTTAAGCA
chr4:43038998-43039732	401	2.79e-04	AACATGCCGA	GAGCAAGGCCA	GCAAAAACAA
chr3:145654797-145655492	392	2.79e-04	GGGACAAAGG	CAGTAGGGCCT	TGGCCAAGTA
chr2:114087212-114087846	350	2.79e-04	TGAGTCAGCA	CTGGGCAGTCA	TTCATCCTTT
chr1:36469598-36470779	801	2.79e-04	ACAACTATTA	CTACACAGGCA	AAGACTATTC
chr13:37130560-37131151	124	2.79e-04	CAGCTCAGTT	CACTGAAGCCA	ACTGACTTGG
chr19:56939731-56940324	76	3.06e-04	CTAGATGACC	CAAGGCAGTCA	TGCAAACTTC
chr13:113262600-113263317	612	3.06e-04	CTAGGTGTAA	CAGGATAGTCA	CCCCATCATT
chr1:91413901-91414660	333	3.33e-04	AGAAAAGCGG	CAGGCCGGCCA	GGAGCGACAG
chr11:75538249-75538877	133	3.33e-04	GATTTTGTTT	GTGAGGGGCCA	ACAGTACAGG
chr7:63956821-63957364	392	3.60e-04	TGCCAGATCA	CAACAAAGCCC	GGGAGAGCCG
chr1:91407699-91408223	429	3.60e-04	AGAGCCAGGC	CAGAAGACCCT	GGTGGGGAGG
chr2:26502150-26502692	310	3.91e-04	GCCCGGGAAT	CAGAGCGGCCC	ATTGTCGCGC
chr3:37128117-37128837	101	4.25e-04	CTTTTCCACA	CAGTGGGGCCT	TTGATGTCCT
chr12:52671351-52671937	514	4.25e-04	TCTTAGCTAT	CACCATAGCCA	ATGGCTTTAT
chr10:80930116-80930840	250	4.25e-04	GAAGTGAGTA	CAACAGAGGCT	GAGGTCTTCT
chr1:132370626-132371282	354	5.82e-04	TGTCTAGCCT	CAGCTTAGCCA	CACAGAGCTA
chr11:90275464-90276273	333	5.82e-04	CTACAGATGG	CTGAGCAGGAA	TTTCCTCTTG
chr14:46950823-46951599	399	6.28e-04	TGGGACTTTA	CCAGAGAGCCA	CAGCACACAC
chr11:67074879-67075569	551	6.75e-04	AATTCCACGG	CTAAAGAGCAT	CCAGTTTGCC
chr10:93642725-93643326	190	6.75e-04	CAACCACCAC	CACGGGAGCAA	TCAAGAGGTT
chr15:77888063-77888703	482	9.00e-04	GCCTCATTGT	CTGAAAGGGAA	GCTCACTATA
chr8:122636472-122637392	633	9.62e-04	TGACCCGGCT	GTGGTGAGCCA	GACACTGTCA
chr3:88138276-88138625	331	9.62e-04	CCTAGGCTGG	GAATAGAGGCA	AGAAAAT
chr2:69673558-69674376	433	1.52e-03	ACTGTGACCC	CTGCATAGACA	CCCTGTCTTT
chr1:170655330-170656359	856	1.62e-03	GCTTCTATGA	CTGTAAGGGCT	ATTCAGCATC
chr15:85698553-85699119	229	1.93e-03	CTTAGGAATT	AACAGAGGCCA	CCACACCGTT

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:93642725-93643326	6.75e-04
chr10:80930116-80930840	4.25e-04
chr10:81072192-81072934	9.81e-05
chr10:80940445-80941162	1.95e-04
chr10:45311444-45312243	2.56e-04
chr11:75538249-75538877	3.33e-04
chr11:59311790-59312990	4.46e-05
chr11:61038023-61038954	1.42e-05
chr11:6481396-6482367	4.46e-05
chr11:59307629-59308768	1.33e-04
chr11:98671678-98672393	4.77e-07
chr11:90275464-90276273	5.82e-04
chr11:54331278-54332036	6.47e-06
chr11:95533718-95534393	3.44e-05
chr11:67074879-67075569	6.75e-04
chr11:67081014-67081680	2.14e-04
chr11:61062370-61063082	4.77e-07
chr12:52671351-52671937	4.25e-04
chr12:17746987-17747690	2.34e-04
chr12:112617839-112618593	1.64e-05
chr12:27390261-27391004	7.09e-05
chr13:48227498-48228346	7.09e-05
chr13:62855904-62856806	1.77e-04
chr13:37130560-37131151	2.79e-04
chr13:41545980-41546746	6.32e-05
chr13:113262600-113263317	3.06e-04
chr13:99210768-99211374	1.19e-04
chr13:81690312-81691137	2.71e-05
chr13:99323556-99324231	7.91e-05
chr14:46950823-46951599	6.28e-04
chr15:97811911-97812695	1.07e-05
chr15:68194220-68194869	2.71e-05
chr15:66883318-66884276	8.74e-05
chr15:34795064-34795760	1.19e-04
chr15:66891763-66893113	3.95e-06
chr15:56692195-56692841	1.62e-04
chr15:28133135-28133948	4.46e-05
chr15:75757872-75758579	3.95e-05
chr15:77888063-77888703	9.00e-04
chr15:25915728-25916468	2.09e-05
chr15:66885900-66886633	1.21e-05
chr15:85698553-85699119	1.93e-03
chr15:66877758-66878823	9.81e-05
chr15:58986361-58987006	1.95e-04
chr16:33940969-33942007	6.47e-06
chr16:30063016-30064679	4.96e-05
chr19:42016673-42017472	7.25e-07
chr19:56939731-56940324	3.06e-04
chr1:39449099-39449934	5.69e-05
chr1:91413901-91414660	3.33e-04
chr1:87203702-87204348	4.96e-05
chr1:91407699-91408223	3.60e-04
chr1:91956233-91956817	1.77e-05
chr1:170655330-170656359	1.62e-03
chr1:36469598-36470779	2.79e-04
chr1:177441252-177442123	1.42e-05
chr1:92787053-92787745	3.95e-05
chr1:132370626-132371282	5.82e-04
chr2:26502150-26502692	3.91e-04
chr2:26487449-26488199	2.71e-05
chr2:26484919-26485755	6.47e-06
chr2:69673558-69674376	1.52e-03
chr2:160872202-160873163	2.56e-04
chr2:114087212-114087846	2.79e-04
chr3:37128117-37128837	4.25e-04
chr3:87982114-87984371	2.71e-05
chr3:99254691-99255387	1.77e-04
chr3:88150177-88151021	1.77e-04
chr3:88138276-88138625	9.62e-04
chr3:145654797-145655492	2.79e-04
chr4:43038998-43039732	2.79e-04
chr4:135765567-135766186	6.47e-06
chr4:74251643-74252226	1.95e-04
chr4:141423232-141423917	1.42e-05
chr5:125110919-125111688	2.09e-05
chr5:125056732-125057346	2.71e-05
chr6:72383040-72383702	3.13e-05
chr6:108668244-108668804	7.09e-05
chr6:108668244-108668981	7.09e-05
chr7:63956821-63957364	3.60e-04
chr7:46370884-46371930	4.46e-05
chr7:45460723-45461396	1.64e-05
chr8:122636472-122637392	9.62e-04
chr8:34679746-34680516	1.77e-04
chr8:111710934-111711702	1.62e-04
chr8:120265441-120266019	3.13e-05
chr8:126583914-126584586	2.34e-04
chr8:118249154-118249839	2.40e-05
chr9:21751868-21752893	3.95e-06
chr9:44078766-44079440	6.32e-05
chr9:94670098-94670696	1.33e-06
chr9:57831107-57831838	7.91e-05
chrX:93288108-93288864	9.81e-05
		0 500 1000 1500 2000

Time 924.1 secs.

Motif 7

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Summary

Sequence Logo

E-value	1.9e-004
Width	15
Sites	23

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[CTA][CG][CT][CT]CCCC[AGT]CCCCCA

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr12:17746987-17747690	548	4.51e-09	AATCTGCAAG	CCTCCCCCACCCCCA	CTCGAGGAGA
chr8:126583914-126584586	25	1.64e-08	TAACCCCCCT	CGCCCCCCACCCCCA	CCCTCACCCC
chr16:33940969-33942007	898	2.91e-08	TGGCCAAGGG	TCTTCCCCACCCCCA	AGGGTCTCCA
chr9:44078766-44079440	599	5.70e-08	CTTCTCCCCC	CCTCCCCCCCCCCCA	CGTCCGACCT
chr15:97811911-97812695	595	1.60e-07	AGAGGGGGGA	ACTCCCCCCCCCCCA	GAGGCCTTCC
chr5:125110919-125111688	426	2.03e-07	AGTCTGCGGC	TGCTCCCCGCCCCCA	CACAGCTGCA
chr8:120265441-120266019	84	3.75e-07	CCCCAGAGGC	CCCTCCCCCCACCCA	GCAAGGCTCA
chr3:87982114-87984371	197	4.15e-07	CACCGCCCTG	TCCCCCCCTCCCCCC	CAGTTCTGCT
chr2:160872202-160873163	853	5.01e-07	GGCTCGACCC	CACCCCCCACCCCCC	GCCCGGGTCG
chr10:80930116-80930840	693	5.46e-07	CTATGTGCTT	CCTCCCCCACCGCCA	TCAGTATTTG
chr3:88150177-88151021	408	8.80e-07	GATTGGATTG	TCGCCCCCTCCCCCA	GCGCATGCTG
chr1:92787053-92787745	148	9.65e-07	TGCCAGGCAC	AGCTCCCCACCCTCA	GGCAGGACCA
chr1:91413901-91414660	188	9.65e-07	GTCCCCTTAG	AGTCCCCCATCCCCA	CTACCCCCAG
chr13:62855904-62856806	583	9.65e-07	AGCCCCTGTC	TCCTCCCCACCCCCG	TGGCTGCTCT
chr1:177441252-177442123	550	1.14e-06	CGGACTCGCT	CGCTCCACACCCCCA	GAGCGCGCTT
chr2:26502150-26502692	425	1.61e-06	CCAGGGGCAG	CCCCCGCCGCACCCA	GGGAGGGGGT
chr15:66883318-66884276	361	1.61e-06	AGCTGCCTGA	CATCCCCCAACCCCA	CTATGCACTC
chr2:26484919-26485755	555	2.02e-06	TAGGGCAGTC	AGCTCCCCGCCCTCA	TCTCTCATGG
chr5:125056732-125057346	114	2.18e-06	GAAGGTTTCT	CACCCACCTCACCCA	GCTCAGGAGT
chr19:42016673-42017472	95	2.34e-06	CCCTTTAGTT	TCCTCACCTTCCCCA	GCTCAGCTAG
chrX:93288108-93288864	616	3.36e-06	TGGAGAGGTT	CCTCCACCGCCACCA	CCAGCTGCAC
chr3:37128117-37128837	549	4.70e-06	ACTACTGAGA	ACTCCACCTCCCACA	AGAGTTTCTT
chr15:77888063-77888703	528	8.22e-06	GCTGTGCACC	CCCTCGCCGCACCCC	TGTCAGCTGG

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:80930116-80930840	5.46e-07
chr12:17746987-17747690	4.51e-09
chr13:62855904-62856806	9.65e-07
chr15:97811911-97812695	1.60e-07
chr15:66883318-66884276	1.61e-06
chr15:77888063-77888703	8.22e-06
chr16:33940969-33942007	2.91e-08
chr19:42016673-42017472	2.34e-06
chr1:91413901-91414660	9.65e-07
chr1:177441252-177442123	1.14e-06
chr1:92787053-92787745	9.65e-07
chr2:26502150-26502692	1.61e-06
chr2:26484919-26485755	2.02e-06
chr2:160872202-160873163	5.01e-07
chr3:37128117-37128837	4.70e-06
chr3:87982114-87984371	4.15e-07
chr3:88150177-88151021	8.80e-07
chr5:125110919-125111688	2.03e-07
chr5:125056732-125057346	2.18e-06
chr8:120265441-120266019	3.75e-07
chr8:126583914-126584586	1.64e-08
chr9:44078766-44079440	5.70e-08
chrX:93288108-93288864	3.36e-06
		0 500 1000 1500 2000

Time 1067.3 secs.

Motif 8

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Summary

Sequence Logo

E-value	1.5e+000
Width	25
Sites	6

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

TGTGTG[TA]GTGTG[AT]G[AT]G[AT]G[AT]G[AT]G[AT]G[AT]

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr6:108668244-108668981	103	1.47e-14	TAAAAGGGGG	TGTGTGTGTGTGAGAGAGAGAGAGA	GCCAGCCACG
chr6:108668244-108668804	103	1.47e-14	TAAAAGGGGG	TGTGTGTGTGTGAGAGAGAGAGAGA	GCCAGCCACG
chr1:36469598-36470779	179	4.86e-13	GGCCTCACTC	TGTGTGTGTGTGTGTGTGTGTGTGT	GTGTGTGTGT
chr1:91413901-91414660	483	4.86e-13	GCGGGAGGGG	TGTGTGTGTGTGTGTGTGTGTGTGT	GTGTGTGTGT
chr7:46370884-46371930	864	7.62e-11	GTTTGAGATA	AGAGAGAGAGAGAGAGAGAGAGAGA	GAGAGAGAGG
chr10:93642725-93643326	468	7.62e-11	GCTGCAAGGC	TGTGTGAGGTGGTGATTGTCAGAGT	GTGAAATCTC

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:93642725-93643326	7.62e-11
chr1:91413901-91414660	4.86e-13
chr1:36469598-36470779	4.86e-13
chr6:108668244-108668804	1.47e-14
chr6:108668244-108668981	1.47e-14
chr7:46370884-46371930	7.62e-11
		0 200 400 600 800 1000

Time 1209.9 secs.

Motif 9

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Summary

Sequence Logo

E-value	2.3e+002
Width	15
Sites	60

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[AGT][GA][CG][CT]C[TA]G[GA][GA][CA][TA][CG][CAT][TGA][GC]

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr11:67074879-67075569	413	1.40e-08	GGATAAATGA	AGCCCTGGGCTCCGG	CTGTGGGGAT
chr4:141423232-141423917	468	1.80e-08	CCCTCTGCAC	AGCCCTGGGATCCTG	GGCACCCCAA
chr15:85698553-85699119	396	2.43e-07	GTCACAGCCC	TGCCCTGGACTCATG	TGGACAGTCC
chr15:66885900-66886633	442	6.43e-07	AGTATTTCAG	AGCCCAGAGCTCAGG	AGCCCCAGCA
chr16:33940969-33942007	960	7.98e-07	TCCCTTCTGC	TGCTCAGGGCACATG	AGGCTCATGC
chr11:67081014-67081680	566	1.79e-06	TGTGGGCACT	AGCCCAGGGCTACAG	TGCCTCTCTC
chr10:81072192-81072934	726	2.15e-06	TCACAGGATA	AACTCTGGGATCATG	G
chr6:108668244-108668981	177	3.06e-06	AGGAGCTCAG	AGGCCTGGGATCTGG	CGGCCTTCAG
chr6:108668244-108668804	177	3.06e-06	AGGAGCTCAG	AGGCCTGGGATCTGG	CGGCCTTCAG
chr5:125110919-125111688	106	3.62e-06	TCATCTAGAT	AGCCCTGGGCTCCAA	TCCCAGCCCC
chr15:66883318-66884276	0	3.62e-06		AGCTCTGGAATCTGG	ATGTGAAGCT
chr3:88138276-88138625	84	4.26e-06	TCCAGTAACA	GGCCCTGAGCTACTG	GCCCTTTAAG
chr15:56692195-56692841	106	5.81e-06	TAAGTGTATA	AACTCTGGACTCTGG	CTGGGGAGGG
chr3:87982114-87984371	1468	6.73e-06	GAGCCCACCC	AGCCCAGAAAACCAG	AGAAGACTCT
chr11:61038023-61038954	333	6.73e-06	CCAGCTCCAC	TGGCCTGGGCTCCGC	AGGGAAGGCT
chr1:177441252-177442123	452	7.79e-06	GCCCCAGGCT	GGCCCTGGCCAGCTG	CGGCCCCGCG
chr3:145654797-145655492	244	1.17e-05	GGTGACATAA	AACCCAGGACTTTTG	ACACTGAATT
chr1:91413901-91414660	640	1.17e-05	CTCCATCCTT	AGGCCTGGACACCAC	TAAGCACTTC
chr11:59307629-59308768	846	1.17e-05	CTGGCCTTGT	GGCCCTGGGATTCAG	AACCTACAGG
chr15:28133135-28133948	339	1.33e-05	GAACTGAGAA	AACCCAGGACTGTGG	GTAACCTAGT
chr13:99210768-99211374	480	1.33e-05	ACCTTTATCA	AGGCCAGAGCATCTG	GATGATTTTA
chr3:88150177-88151021	711	1.50e-05	CAGGACACAG	TGCTCAGGGCAGAAG	GGAGTGAGGG
chr9:44078766-44079440	507	1.69e-05	GCCACGGGTT	GGCCCAGGGCCCTTC	CAAGCATAGT
chr15:68194220-68194869	327	1.69e-05	CACTCAGACA	GGCCCAGGCCATCTG	TGCTTAAGGC
chr8:34679746-34680516	255	1.90e-05	CTTAGAAAGG	AGCCCTGACAACCTC	CCTGCACCCG
chr7:63956821-63957364	242	1.90e-05	ACACGGCGGG	AACCCAGGACAACAG	CGGGTTGGGA
chr8:120265441-120266019	248	2.13e-05	AAAGGCAGGG	AGGCCAGGGAAGTGG	CCTTCTGGTC
chr7:46370884-46371930	698	2.13e-05	ACAATGCCTC	AGCCCAGAGCCAATG	GCACGCTCCA
chr15:97811911-97812695	234	2.13e-05	CCAGACATAG	AGCCCAGAGCTCACG	ATCAGCCCTA
chr12:52671351-52671937	32	2.13e-05	GGGGAACGTT	GACTCTGAGCTCTGG	GGAGGGCTGC
chr15:66877758-66878823	821	2.37e-05	TGTGCTTTGA	AGCTCTGGGCCAAGG	CTAGAGGGAA
chr10:45311444-45312243	14	2.37e-05	AGATAAGCAC	AACTCTGGGCTAATC	TTCATCAGCG
chr5:125056732-125057346	217	2.64e-05	AGGTGCGGGA	TAGCCAGGCCACCTG	CTGGCCTACA
chr11:59311790-59312990	742	2.64e-05	CTCCCGGGGA	GGCCCTGAACCCCAG	AGGGTGATGA
chr3:37128117-37128837	492	2.93e-05	CTAGAGATGC	TGCCCGGGGAACCTG	TCACCTGTTG
chr2:26484919-26485755	213	2.93e-05	AGGGTCCTTG	GGCCCAGGCCTAAGG	GTCCCAACCG
chr19:42016673-42017472	566	3.57e-05	ATGGTCACAC	TGGTCAGGCCTCAGG	CTGAGTGGAG
chr15:77888063-77888703	599	3.57e-05	ACATAGGCCG	AGCCCAGAACAGAGC	TCCAGGTAGA
chr1:91956233-91956817	78	4.30e-05	GAGTCTGAGT	AACTCTGAGCACATA	GTGTAGTCCT
chr15:75757872-75758579	484	4.30e-05	TGTTGACTGG	AGCTCAGTGCTCCTC	AGCTCCACTC
chr15:66891763-66893113	119	4.30e-05	ACCCTGGACT	GGCCCTGTGATCTTG	GGTGGGTCAC
chr13:48227498-48228346	510	4.30e-05	CCGCCCGCCC	GGGCCAGAACTCCGC	TGGCTCCTCC
chr2:160872202-160873163	343	4.71e-05	CGACCACCCA	GACCCTGGACTCCCG	GGCGTGGAGC
chr13:62855904-62856806	557	5.13e-05	GCACTGGACA	AGGCCAGGGTACCTG	CAGCCCCTGT
chr15:25915728-25916468	478	5.59e-05	GTTGCACCAT	GGCTCTGGAAATCTC	TTCGGATTTG
chr11:75538249-75538877	265	5.59e-05	TAGCCCGGGC	TGCTCTGACCACTTC	ATGGTGGCAC
chr8:122636472-122637392	722	6.07e-05	CTGTTGACCC	TGCTCTGGGACCCTA	TTGGCATTCT
chr2:69673558-69674376	134	7.12e-05	AATGAATCCC	TAGTCAGAGCACTGG	CAGGTCCATC
chr4:43038998-43039732	209	8.91e-05	GTTCCCTCCC	TGCCCAGAGACGCTC	GAAGACTCAC
chr6:72383040-72383702	275	9.57e-05	AGGCAGACTG	GGCTCTGGAAAGAAC	CGCAGTGATG
chr15:34795064-34795760	182	9.57e-05	CCCTATCTCT	GAGCCTGGAAAGCAG	TCTGACAGCT
chr2:26487449-26488199	514	1.03e-04	GGGAAGCTGG	TGGCCAGGGACGCTC	CTCCGTGGGG
chr8:111710934-111711702	24	1.10e-04	CTGTCCACCA	TGTCCTGGGCAGCGG	AAGGGGATGG
chr12:27390261-27391004	678	1.17e-04	TTGGCTGTTC	AAGTCTGGACTCAAA	GGACCAGTCC
chr10:80940445-80941162	188	1.25e-04	GGCACAAGTT	GGCTCAGAAAAGTTC	TTTGGGTAGC
chr13:81690312-81691137	144	1.33e-04	AGCTGCTGAG	TAGCCTGGCCTAAAG	AGTGAGATCC
chr12:112617839-112618593	594	1.42e-04	GAAGCCTCAG	TGCCCAGGACCCGTC	TAAGCCCCCA
chr7:45460723-45461396	109	1.51e-04	CTAATCTCAG	AAGCCTGGGAAGAGA	GCAAAGGGAA
chr1:36469598-36470779	504	1.51e-04	CCCAGGGGTC	AACCCAGGCCTTGTG	CTTAGTATAG
chr10:80930116-80930840	509	1.70e-04	ATCCCTATAG	GGCTCGGGGCTTTGG	GGGACTTTCC

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:80930116-80930840	1.70e-04
chr10:81072192-81072934	2.15e-06
chr10:80940445-80941162	1.25e-04
chr10:45311444-45312243	2.37e-05
chr11:75538249-75538877	5.59e-05
chr11:59311790-59312990	2.64e-05
chr11:61038023-61038954	6.73e-06
chr11:59307629-59308768	1.17e-05
chr11:67074879-67075569	1.40e-08
chr11:67081014-67081680	1.79e-06
chr12:52671351-52671937	2.13e-05
chr12:112617839-112618593	1.42e-04
chr12:27390261-27391004	1.17e-04
chr13:48227498-48228346	4.30e-05
chr13:62855904-62856806	5.13e-05
chr13:99210768-99211374	1.33e-05
chr13:81690312-81691137	1.33e-04
chr15:97811911-97812695	2.13e-05
chr15:68194220-68194869	1.69e-05
chr15:66883318-66884276	3.62e-06
chr15:34795064-34795760	9.57e-05
chr15:66891763-66893113	4.30e-05
chr15:56692195-56692841	5.81e-06
chr15:28133135-28133948	1.33e-05
chr15:75757872-75758579	4.30e-05
chr15:77888063-77888703	3.57e-05
chr15:25915728-25916468	5.59e-05
chr15:66885900-66886633	6.43e-07
chr15:85698553-85699119	2.43e-07
chr15:66877758-66878823	2.37e-05
chr16:33940969-33942007	7.98e-07
chr19:42016673-42017472	3.57e-05
chr1:91413901-91414660	1.17e-05
chr1:91956233-91956817	4.30e-05
chr1:36469598-36470779	1.51e-04
chr1:177441252-177442123	7.79e-06
chr2:26487449-26488199	1.03e-04
chr2:26484919-26485755	2.93e-05
chr2:69673558-69674376	7.12e-05
chr2:160872202-160873163	4.71e-05
chr3:37128117-37128837	2.93e-05
chr3:87982114-87984371	6.73e-06
chr3:88150177-88151021	1.50e-05
chr3:88138276-88138625	4.26e-06
chr3:145654797-145655492	1.17e-05
chr4:43038998-43039732	8.91e-05
chr4:141423232-141423917	1.80e-08
chr5:125110919-125111688	3.62e-06
chr5:125056732-125057346	2.64e-05
chr6:72383040-72383702	9.57e-05
chr6:108668244-108668804	3.06e-06
chr6:108668244-108668981	3.06e-06
chr7:63956821-63957364	1.90e-05
chr7:46370884-46371930	2.13e-05
chr7:45460723-45461396	1.51e-04
chr8:122636472-122637392	6.07e-05
chr8:34679746-34680516	1.90e-05
chr8:111710934-111711702	1.10e-04
chr8:120265441-120266019	2.13e-05
chr9:44078766-44079440	1.69e-05
		0 500 1000 1500 2000

Time 1352 secs.

Motif 10

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Summary

Sequence Logo

E-value	3.8e+002
Width	21
Sites	5

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

T[CG][AG]G[GT]AG[TAG]T[CT]A[AT]G[GAC][TC][CG]A[GT]CCT

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chr9:21751868-21752893	97	4.32e-13	GGCAGGAAGA	TCAGGAGTTCAAGGTCATCCT	CCCCTACATA
chr10:80940445-80941162	59	4.32e-13	GGCAGGAGGG	TCAGGAGTTCAAGGTCATCCT	CCCTGCATAG
chr1:36469598-36470779	1010	5.06e-12	GGACATAGGA	TCGGGAGTTCAAGGTCAGCCT	CAGATTTGAA
chr15:66885900-66886633	546	2.39e-10	TGCCTTGCCG	TGAGGAGGTCATGCCCAGCCT	TGGCAGTCAG
chr13:48227498-48228346	689	2.92e-10	AACCTTGCCC	TGAGTAGATTAAGATGAGCCT	TCAAAGTGTG

Block Diagrams

Name	Lowest p-value	Motif Location
chr10:80940445-80941162	4.32e-13
chr13:48227498-48228346	2.92e-10
chr15:66885900-66886633	2.39e-10
chr1:36469598-36470779	5.06e-12
chr9:21751868-21752893	4.32e-13
		0 200 400 600 800 1000

Time 1492.8 secs.

All Motifs

Top

Combined Block Diagrams

Non-overlapping sites with a p-value better than 0.0001.
The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. The motif blocks have tool tips with more information.

Motif 1

Motif 2

Motif 3

Motif 4

Motif 5

Motif 6

Motif 7

Motif 8

Motif 9

Motif 10

Name	Combined p-value	Motif Location
chr10:93642725-93643326	1.78e-15
chr10:80930116-80930840	3.33e-08
chr10:81072192-81072934	1.60e-04
chr10:80940445-80941162	3.92e-11
chr10:45311444-45312243	1.25e-05
chr11:75538249-75538877	3.10e-05
chr11:59311790-59312990	1.14e-05
chr11:61038023-61038954	7.28e-07
chr11:6481396-6482367	9.81e-10
chr11:59307629-59308768	2.90e-07
chr11:98671678-98672393	1.27e-08
chr11:90275464-90276273	3.66e-06
chr11:54331278-54332036	6.57e-06
chr11:95533718-95534393	1.95e-02
chr11:67074879-67075569	4.86e-06
chr11:67081014-67081680	3.95e-05
chr11:61062370-61063082	6.69e-06
chr12:52671351-52671937	1.13e-05
chr12:17746987-17747690	4.77e-11
chr12:112617839-112618593	2.29e-04
chr12:27390261-27391004	1.09e-06
chr13:48227498-48228346	9.17e-10
chr13:62855904-62856806	1.85e-14
chr13:37130560-37131151	6.95e-05
chr13:41545980-41546746	2.81e-07
chr13:113262600-113263317	5.91e-03
chr13:99210768-99211374	3.93e-11
chr13:81690312-81691137	6.73e-07
chr13:99323556-99324231	1.14e-03
chr14:46950823-46951599	8.03e-03
chr15:97811911-97812695	6.65e-07
chr15:68194220-68194869	8.66e-06
chr15:66883318-66884276	1.46e-11
chr15:34795064-34795760	1.28e-04
chr15:66891763-66893113	6.04e-06
chr15:56692195-56692841	8.78e-05
chr15:28133135-28133948	4.51e-08
chr15:75757872-75758579	6.44e-04
chr15:77888063-77888703	9.23e-11
chr15:25915728-25916468	2.69e-03
chr15:66885900-66886633	2.06e-14
chr15:85698553-85699119	4.81e-04
chr15:66877758-66878823	2.64e-05
chr15:58986361-58987006	1.07e-04
chr16:33940969-33942007	4.79e-11
chr16:30063016-30064679	3.45e-04
chr19:42016673-42017472	2.95e-14
chr19:56939731-56940324	1.34e-02
chr1:39449099-39449934	7.41e-03
chr1:91413901-91414660	9.53e-15
chr1:87203702-87204348	9.68e-04
chr1:91407699-91408223	2.63e-04
chr1:91956233-91956817	6.21e-04
chr1:170655330-170656359	3.24e-03
chr1:36469598-36470779	2.22e-24
chr1:177441252-177442123	2.85e-05
chr1:92787053-92787745	4.42e-06
chr1:132370626-132371282	2.50e-09
chr2:26502150-26502692	4.26e-05
chr2:26487449-26488199	6.26e-04
chr2:26484919-26485755	4.52e-08
chr2:69673558-69674376	1.23e-06
chr2:160872202-160873163	6.30e-04
chr2:114087212-114087846	2.72e-02
chr3:37128117-37128837	3.01e-04
chr3:87982114-87984371	6.42e-08
chr3:99254691-99255387	1.08e-06
chr3:88150177-88151021	1.04e-09
chr3:88138276-88138625	7.52e-06
chr3:145654797-145655492	1.56e-08
chr4:43038998-43039732	2.15e-06
chr4:135765567-135766186	6.12e-05
chr4:74251643-74252226	1.67e-02
chr4:141423232-141423917	1.89e-07
chr5:125110919-125111688	1.82e-08
chr5:125056732-125057346	7.18e-09
chr6:72383040-72383702	1.71e-06
chr6:108668244-108668804	4.59e-11
chr6:108668244-108668981	2.95e-12
chr7:63956821-63957364	1.84e-03
chr7:46370884-46371930	8.73e-16
chr7:45460723-45461396	1.46e-03
chr8:122636472-122637392	1.44e-05
chr8:34679746-34680516	9.98e-06
chr8:111710934-111711702	1.05e-02
chr8:120265441-120266019	5.49e-06
chr8:126583914-126584586	4.86e-07
chr8:118249154-118249839	1.22e-05
chr9:21751868-21752893	1.11e-12
chr9:44078766-44079440	7.08e-09
chr9:94670098-94670696	7.96e-08
chr9:57831107-57831838	4.66e-04
chrX:93288108-93288864	8.69e-08
		0 500 1000 1500 2000

Motif 1

Motif 2

Motif 3

Motif 4

Motif 5

Motif 6

Motif 7

Motif 8

Motif 9

Motif 10

Top

MEME version

4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011)

Reference

Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

show training set...

Training set:

Datafile = mm10.Random_Elements.liftOver.fa
Alphabet = ACGT

Sequence name	Weighting	Length
chr10:93642725-93643326	1.000000	601
chr10:80940445-80941162	1.000000	717
chr11:59311790-59312990	1.000000	1200
chr11:59307629-59308768	1.000000	1139
chr11:54331278-54332036	1.000000	758
chr11:67081014-67081680	1.000000	666
chr12:17746987-17747690	1.000000	703
chr13:48227498-48228346	1.000000	848
chr13:41545980-41546746	1.000000	766
chr13:81690312-81691137	1.000000	825
chr15:97811911-97812695	1.000000	784
chr15:34795064-34795760	1.000000	696
chr15:28133135-28133948	1.000000	813
chr15:25915728-25916468	1.000000	740
chr15:66877758-66878823	1.000000	1065
chr16:30063016-30064679	1.000000	1663
chr1:39449099-39449934	1.000000	835
chr1:91407699-91408223	1.000000	524
chr1:36469598-36470779	1.000000	1181
chr1:132370626-132371282	1.000000	656
chr2:26484919-26485755	1.000000	836
chr2:114087212-114087846	1.000000	634
chr3:99254691-99255387	1.000000	696
chr3:145654797-145655492	1.000000	695
chr4:74251643-74252226	1.000000	583
chr5:125056732-125057346	1.000000	614
chr6:108668244-108668981	1.000000	737
chr7:45460723-45461396	1.000000	673
chr8:111710934-111711702	1.000000	768
chr8:118249154-118249839	1.000000	685
chr9:94670098-94670696	1.000000	598

Sequence name	Weighting	Length
chr10:80930116-80930840	1.000000	724
chr10:45311444-45312243	1.000000	799
chr11:61038023-61038954	1.000000	931
chr11:98671678-98672393	1.000000	715
chr11:95533718-95534393	1.000000	675
chr11:61062370-61063082	1.000000	712
chr12:112617839-112618593	1.000000	754
chr13:62855904-62856806	1.000000	902
chr13:113262600-113263317	1.000000	717
chr13:99323556-99324231	1.000000	675
chr15:68194220-68194869	1.000000	649
chr15:66891763-66893113	1.000000	1350
chr15:75757872-75758579	1.000000	707
chr15:66885900-66886633	1.000000	733
chr15:58986361-58987006	1.000000	645
chr19:42016673-42017472	1.000000	799
chr1:91413901-91414660	1.000000	759
chr1:91956233-91956817	1.000000	584
chr1:177441252-177442123	1.000000	871
chr2:26502150-26502692	1.000000	542
chr2:69673558-69674376	1.000000	818
chr3:37128117-37128837	1.000000	720
chr3:88150177-88151021	1.000000	844
chr4:43038998-43039732	1.000000	734
chr4:141423232-141423917	1.000000	685
chr6:72383040-72383702	1.000000	662
chr7:63956821-63957364	1.000000	543
chr8:122636472-122637392	1.000000	920
chr8:120265441-120266019	1.000000	578
chr9:21751868-21752893	1.000000	1025
chr9:57831107-57831838	1.000000	731

Sequence name	Weighting	Length
chr10:81072192-81072934	1.000000	742
chr11:75538249-75538877	1.000000	628
chr11:6481396-6482367	1.000000	971
chr11:90275464-90276273	1.000000	809
chr11:67074879-67075569	1.000000	690
chr12:52671351-52671937	1.000000	586
chr12:27390261-27391004	1.000000	743
chr13:37130560-37131151	1.000000	591
chr13:99210768-99211374	1.000000	606
chr14:46950823-46951599	1.000000	776
chr15:66883318-66884276	1.000000	958
chr15:56692195-56692841	1.000000	646
chr15:77888063-77888703	1.000000	640
chr15:85698553-85699119	1.000000	566
chr16:33940969-33942007	1.000000	1038
chr19:56939731-56940324	1.000000	593
chr1:87203702-87204348	1.000000	646
chr1:170655330-170656359	1.000000	1029
chr1:92787053-92787745	1.000000	692
chr2:26487449-26488199	1.000000	750
chr2:160872202-160873163	1.000000	961
chr3:87982114-87984371	1.000000	2257
chr3:88138276-88138625	1.000000	349
chr4:135765567-135766186	1.000000	619
chr5:125110919-125111688	1.000000	769
chr6:108668244-108668804	1.000000	560
chr7:46370884-46371930	1.000000	1046
chr8:34679746-34680516	1.000000	770
chr8:126583914-126584586	1.000000	672
chr9:44078766-44079440	1.000000	674
chrX:93288108-93288864	1.000000	756

Command line summary

meme mm10.Random_Elements.liftOver.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o mm10.Random_Elements.liftOver.meme.maxw25

Letter frequencies in dataset

A: 0.233 C: 0.264 G: 0.273 T: 0.230

Background letter frequencies (from dataset with add-one prior applied):

A: 0.233 C: 0.264 G: 0.273 T: 0.230

Stopping Reason

Stopped because nmotifs = 10 reached. Program ran on pongo.

show model parameters...

Model parameters

host                  = pongo
type                  = zoops
nmotifs               = 10
evalue_threshold      = inf
object_function       = E-value of product of p-values
min_width             = 8
max_width             = 25
minic                 = 0.00
wg                    = 11
ws                    = 1
endgaps               = yes
minsites              = 2
maxsites              = 93
wnsites               = 0.8
prob                  = 1
spmap                 = uni
spfuzz                = 0.5
prior                 = dirichlet
beta                  = 0.01
maxiter               = 50
distance              = 1e-05
num_sequences         = 93
num_positions         = 72335
seed                  = 0
seqfrac               = 1
strands               = forward
priors_file           = 
reason_for_stopping   = Stopped because nmotifs = 10 reached.

Explanation of MEME Results

Top

The MEME results consist of

The overview of all discovered motifs.
Information on each of the motifs MEME discovered, including:
1. A summary table showing the width, number of contributing sites, log likelihood ratio, statistical significance, information content and relative entropy of the motif.
2. A sequence LOGO.
3. Downloadable LOGO files suitable for publication.
4. A regular expression describing the motif.
5. Some further analysis that can be performed on the motif.
6. A list of data formats describing the motif.
7. The contributing sites of the motif sorted by p-value and aligned with each other.
8. The block diagrams of the contributing sites of the motif within each sequence in the training set.
A combined block diagram showing an optimized (non-overlapping) tiling of all of the motifs onto each of the sequences in the training set.
The version of MEME and the date it was released.
The reference to cite if you use MEME in your research.
A description of the sequences you submitted (the "training set") showing the name, "weight" and length of each sequence.
The command line summary detailing the parameters with which you ran MEME.
The reason why MEME stopped and the name of the CPU on which it ran.
This explanation of how to interpret MEME results.

Motifs

For each motif that it discovers in the training set, MEME prints the following information:

Summary Table

This summary table gives the main attributes of the motif.

E-value: The statistical significance of the motif. MEME usually finds the most statistically significant (low E-value) motifs first. The E-value of a motif is based on its log likelihood ratio, width, sites, the background letter frequencies (given in the command line summary), and the size of the training set. The E-value is an estimate of the expected number of motifs with the given log likelihood ratio (or higher), and with the same width and site count, that one would find in a similarly sized set of random sequences. (In random sequences each position is independent with letters chosen according to the background letter frequencies.)
Width: The width of the motif. Each motif describes a pattern of a fixed with as no gaps are allowed in MEME motifs.
Sites: The number of sites contributing to the construction of the motif.
Log Likelihood Ratio: The log likelihood ratio of the motif.The log likelihood ratio is the logarithm of the ratio of the probability of the occurrences of the motif given the motif model (likelihood given the motif) versus their probability given the background model (likelihood given the null model). (Normally the background model is a 0-order Markov model using the background letter frequencies, but higher order Markov models may be specified via the -bfile option to MEME.)
Information Content: The information content of the motif in bits. It is equal to the sum of the uncorrected information content, R(), in the columns of the LOGO. This is equal relative entropy of the motif relative to a uniform background frequency model.
Relative Entropy: The relative entropy of the motif, computed in bits and relative to the background letter frequencies given in the command line summary. It is equal to the log-likelihood ratio (llr) divided by the number of contributing sites of the motif times 1/ln(2),

re = llr / (sites * ln(2)).

Sequence LOGO

MEME motifs are represented by position-specific probability matrices that specify the probability of each possible letter appearing at each possible position in an occurrence of the motif. These are displayed as "sequence LOGOS", containing stacks of letters at each position in the motif. The total height of the stack is the "information content" of that position in the motif in bits. The height of the individual letters in a stack is the probability of the letter at that position multiplied by the total information content of the stack.

Note: The MEME LOGO differs from those produced by the Weblogo program because a small-sample correction is NOT applied. However, MEME LOGOs in PNG and encapsulated postscript (EPS) formats with small-sample correction (SSC) are available by clicking on the download button with "SSC" set to "on" under Download LOGO. The MEME LOGOs without small sample correction are similarly available. Error bars are included in the LOGOs with small-sample correction.

Modern web browsers supporting the canvas element and it's text manipulation functions as described in the html 5 standard, can render the sequence LOGOs without needing the images. The browsers which work with this feature are:

Firefox 3.5 and above
Safari 4 and above
Google Chrome 4 and above

Unfortunately Internet Explorer 8 does not support any html 5 features.

The information content of each motif position is computed as described in the paper by Schneider and Stephens, "Sequence Logos: A New Way to Display Consensus Sequences" but the small-sample correction, e(n), is set to zero for the LOGO displayed in the MEME output. The corrected information content of position i is given by

            R(i) for amino acids   = log2(20) - (H(i) + e(n))   (1a) 
            R(i) for nucleic acids =    2    - (H(i) + e(n))    (1b)

where H(i) is the entropy of position i,

            H(l) = - (Sum f(a,i) * log2[ f(a,i) ]).             (2)

Here, f(a,i) is the frequency of base or amino acid a at position i, and e(n) is the small-sample correction for an alignment of n letters. The height of letter a in column i is given by

            height = f(a,i) * R(i)                              (3)

The approximation for the small-sample correction, e(n), is given by:

            e(n) = (s-1) / (2 * ln(2) * n),                     (4)

where s is 4 for nucleotides, 20 for amino acids, and n is the number of sequences in the alignment.

The letters in the logos are colored as follows.
For DNA sequences, the letter categories contain one letter each.

NUCLEIC ACIDS	COLOR
A	RED
C	BLUE
G	ORANGE
T	GREEN

For proteins, the categories are based on the biochemical properties of the various amino acids.

AMINO ACIDS	COLOR	PROPERTIES
A, C, F, I, L, V, W and M	BLUE	Most hydrophobic[Kyte and Doolittle, 1982]
NQST	GREEN	Polar, non-charged, non-aliphatic residues
DE	MAGENTA	Acidic
KR	RED	Positively charged
H	PINK
G	ORANGE
P	YELLOW
Y	TURQUOISE

J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.

Note: the "text" output format of MEME preserves the historical MEME format where LOGOS are replaced by a simplified probability matrix, a relative entropy plot, and a multi-level consensus sequence.

Download LOGO

Logos can be generated on the fly by the meme webservice and you may specify a number of options to customize them to your needs. The options are:

Orientation: Only valid for nucleotide motifs. Generate the standard view or the reverse complemented view of the motif.
SSC: Use small sample correction and show errorbars on the image. Small sample correction is used by the Weblogo program.
Format: The format of the generated image. If the image is to be used on the web then png is recommend. If the image is to be published then eps is recommended.
Width: The width of the generated image in centimetres.
Height: The height of the generated image in centimetres.

Regular Expression

This is a regular expression (RE) describing the motif. In each column, all letters with observed frequencies greater than 0.2 are shown; less-frequent letters are not included in the RE. MEME regular expressions are interpreted as follows: single letters match that letter; groups of letters in square brackets match any of the letters in the group. Regular expressions can be used for searching for the motif in sequences (using, for example, PatMatch) but the search accuracy will usually be better with the PSSM (using, for example MAST.)

Further Analysis

Either as a group or individually the motifs have a number of options for further analysis.

MAST: Finds the best matching positions for a set of motifs in each sequence provided to it, ranked by the combined score of each sequence. For more information about MAST please read the introduction.
FIMO: Finds all matches for a motif. For more information about FIMO please read the introduction.
TOMTOM: Compares a single motif to a database of motifs. For more information about TOMTOM please read the introduction.
GOMO: Identifies possible roles of DNA binding motifs. For more information about GOMO please read the introduction.
BLOCKS: Submit to Blocks Multiple Alignment Processor where you can do several things like create phylogeny trees and search the blocks against a database of other blocks (protein only). For more information about BLOCKS Multiple Alignment Processor please visit the website.

Data Formats

The extracted data is avaliable in the following formats.

PSPM Format: The motif itself is a position-specific probability matrix giving, for each position in the pattern, the observed frequency ("probability") of each possible letter. The probability matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The motif is preceded by a line starting with "letter-probability matrix:" and containing the length of the alphabet, width of the motif, number of occurrences of the motif, and the E-value of the motif.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
PSSM Format: The position-specific scoring matrix corresponding to the motif is printed for use by database search programs such as MAST. This matrix is a log-odds matrix calculated by taking 100 times the log (base 2) of the ratio p/f at each position in the motif where p is the probability of a particular letter at that position in the motif, and f is the background frequency of the letter (given in the command line summary section.) This is the same matrix that is used above in computing the p-values of the occurrences of the motif in the Sites and Block Diagrams sections. The scoring matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The scoring matrix is preceded by a line starting with "log-odds matrix:" and containing the length of the alphabet, width of the motif, number of characters in the training set, the scoring threshold (obsolete) and the motif E-value.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
BLOCKS Format: For use with BLOCKS tools.
FASTA Format: The FASTA format as described here.
Raw Format: Just the sites of the sequences that contributed to the motif. One site per line.

Sites

MEME displays the occurrences (sites) of the motif in the training set. The sites are shown aligned with each other, and the ten sequence positions preceding and following each site are also shown. Each site is identified by the name of the sequence where it occurs, the strand (if both strands of DNA sequences are being used), and the position in the sequence where the site begins. When the DNA strand is specified, '+' means the sequence in the training set, and '-' means the reverse complement of the training set sequence. (For '-' strands, the 'start' position is actually the position on the positive strand where the site ends.) The sites are listed in order of increasing statistical significance (p-value). The p-value of a site is computed from the the match score of the site with the position specific scoring matrix for the motif. The p-value gives the probability of a random string (generated from the background letter frequencies) having the same match score or higher. (This is referred to as the position p-value by the MAST algorithm.)

Block Diagrams

The occurrences of the motif in the training set sequences are shown as coloured blocks on a line. One diagram is printed for each sequence showing all the sites contributating to that motif in that sequence. The sequences are listed in the same order as in the input to make it easier to compare multiple block diagrams. Additionally the best p-value for the sequence/motif combination is listed though this may not be in ascending order as with the sites. The p-value of an occurrence is the probability of a single random subsequence the length of the motif, generated according to the 0-order background model, having a score at least as high as the score of the occurrence. When the DNA strand is specified '+', it means the motif appears from left to right on the sequence, and '-' means the motif appears from right to left on the complementary strand. A sequence position scale is shown at the end of each table of block diagrams.

Combined Block Diagrams

The motif occurrences shown in the motif summary may not be exactly the same as those reported in each motif section because only motifs with a position p-value of 0.0001 that don't overlap other, more significant motif occurrences are shown.

See the documentation for MAST output for the definition of position and combined p-values.