******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= ErythroidNeg.mm10.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:27364525-27364764 1.0000 239 chr2:27152224-27152414 1.0000 190 chr6:38699011-38699301 1.0000 290 chr6:88322313-88322595 1.0000 282 chr6:38765236-38765385 1.0000 149 chr6:38856153-38856302 1.0000 149 chr6:88203909-88204133 1.0000 224 chr6:38642265-38642444 1.0000 179 chr6:38666599-38666977 1.0000 378 chr6:38832190-38832724 1.0000 534 chr6:38757479-38757763 1.0000 284 chr7:70311472-70312021 1.0000 549 chr7:111460560-111461109 1.0000 549 chr7:95671176-95672125 1.0000 949 chr7:63720196-63720745 1.0000 549 chr7:69362498-69363047 1.0000 549 chr7:100188089-100188638 1.0000 549 chr7:70413249-70413798 1.0000 549 chr7:104084169-104084518 1.0000 349 chr7:107696305-107696854 1.0000 549 chr7:123713721-123714270 1.0000 549 chr7:101718758-101719307 1.0000 549 chr7:127921931-127922530 1.0000 599 chr7:81826094-81826693 1.0000 599 chr7:107074995-107075594 1.0000 599 chr7:71502866-71503415 1.0000 549 chr7:101500159-101500708 1.0000 549 chr7:108796541-108797740 1.0000 1199 chr7:107560514-107561063 1.0000 549 chr7:67973719-67974268 1.0000 549 chr7:66578070-66578669 1.0000 599 chr7:90158171-90158971 1.0000 800 chr7:92391770-92392570 1.0000 800 chr7:71036918-71037467 1.0000 549 chr7:83097025-83097574 1.0000 549 chr7:66763679-66764228 1.0000 549 chr7:66157214-66157813 1.0000 599 chr7:115626693-115627692 1.0000 999 chr7:82971630-82972179 1.0000 549 chr7:63499316-63500135 1.0000 819 chr7:71389204-71389753 1.0000 549 chr7:105547945-105548594 1.0000 649 chr7:104118784-104119383 1.0000 599 chr7:115098190-115098739 1.0000 549 chr7:66280165-66280714 1.0000 549 chr7:83063963-83064847 1.0000 884 chr7:65300367-65300916 1.0000 549 chr7:106294602-106295451 1.0000 849 chr7:100578576-100579125 1.0000 549 chr7:70093382-70093831 1.0000 449 chr7:66197881-66198688 1.0000 807 chr7:110877085-110877684 1.0000 599 chr7:123986234-123986783 1.0000 549 chr7:73448326-73449091 1.0000 765 chr7:92271035-92271634 1.0000 599 chr7:92399295-92399894 1.0000 599 chr7:103970880-103971429 1.0000 549 chr7:73056302-73056901 1.0000 599 chr7:81231583-81232132 1.0000 549 chr7:108330771-108331370 1.0000 599 chr7:76990537-76991363 1.0000 826 chr7:105413005-105413554 1.0000 549 chr7:97516597-97517551 1.0000 954 chr7:67296236-67296942 1.0000 706 chr7:112880175-112880824 1.0000 649 chr7:124855920-124856569 1.0000 649 chr7:69829229-69829778 1.0000 549 chr7:68211440-68211989 1.0000 549 chr7:69959582-69960631 1.0000 1049 chr7:69707316-69707865 1.0000 549 chr7:69891296-69891995 1.0000 699 chr7:70514420-70514969 1.0000 549 chr7:63590798-63591247 1.0000 449 chr7:108272128-108272677 1.0000 549 chr7:114361954-114362553 1.0000 599 chr7:105708790-105709239 1.0000 449 chr7:79146584-79147402 1.0000 818 chr7:71945397-71946337 1.0000 940 chr7:70144673-70145243 1.0000 570 chr7:100681486-100682407 1.0000 921 chr7:109488686-109489235 1.0000 549 chr7:125090817-125092066 1.0000 1249 chr7:91474804-91475403 1.0000 599 chr7:66468915-66469464 1.0000 549 chr7:127847549-127848498 1.0000 949 chr7:92264468-92265017 1.0000 549 chr7:66749727-66750276 1.0000 549 chr8:122233392-122233542 1.0000 150 chr8:122375539-122375755 1.0000 216 chr8:122108965-122109228 1.0000 263 chr8:122246044-122246311 1.0000 267 chrX:7948807-7949230 1.0000 423 chrX:150565848-150566190 1.0000 342 chrX:150846672-150846828 1.0000 156 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme ErythroidNeg.mm10.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o ErythroidNeg.mm10.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 94 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 53912 N= 94 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.273 C 0.220 G 0.218 T 0.289 Background letter frequencies (from dataset with add-one prior applied): A 0.273 C 0.220 G 0.218 T 0.289 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 20 sites = 94 llr = 745 E-value = 1.6e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 6114635344425:625165 pos.-specific C ::441:::111526:::221 probability G 2741:637444213:72812 matrix T 22113:2:121:3:313:12 bits 2.2 2.0 1.8 1.5 Relative 1.3 * Entropy 1.1 * * * * (11.4 bits) 0.9 * * * * * * 0.7 * * * *** * 0.4 ** **** * ****** 0.2 ******************** 0.0 -------------------- Multilevel AGCCAGAGGAGCACAGAGAA consensus G GATAGAAGAATGTAT G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- chr7:100681486-100682407 549 8.50e-09 GTTTCAGAAC AGCCAGGGTAACACAGAGAA GCCCTGTATT chr7:127921931-127922530 9 1.07e-08 TCCAGGAC AGCCAGGGCTACACAGAGAA ACCCTGTCTC chr7:71945397-71946337 405 4.96e-08 GAAGAGGGAG AGGGAGAGGGAGAGAGAGAG AGAGAGAGAG chr7:70413249-70413798 21 7.42e-08 AGAATGAAGG AGGCTGTGAGGCACTGAGGA AAAGTCAGAG chr7:92264468-92265017 219 2.76e-07 TGGCAGTTAT GGTCAGAGGGGCAGAGTGCA TTGTGACAGC chr7:66468915-66469464 439 2.76e-07 AGACAATGTG GGCCAGAGTACCAGAGAGAA ACATGGTCTT chr7:115098190-115098739 19 3.91e-07 TAATGATATT GGGGAGTGGGGCACAGAGTA GGTGGCTAAA chr7:104084169-104084518 41 3.91e-07 GATAGGATTT AGCATAGGAGGCACAAAGAG ATAGAGAATA chr7:107074995-107075594 86 5.49e-07 GTGAATAAAG AACAAAAGGAACCCAGAGAA CCATAGTGAG chr7:66578070-66578669 175 7.63e-07 CTTCCTTCCC AGGGAGAAGAAACCAGAGAG ACACTAGACA chr7:69707316-69707865 64 1.23e-06 TTTGGCTGTT TGGAAGTGGGGAAGAGAGAT TATATATTTC chr8:122108965-122109228 90 3.48e-06 AGGTGATCAT GGCCAGAGGTCATGAGAGCA GAGCCCTGTC chr7:70311472-70312021 2 4.01e-06 A AGGGTAAGCAGCCCTGTGAA GCAGTCTATC chr7:81826094-81826693 345 4.61e-06 GAAATAAGCT ACGCAGGGAGACACAGTGTA CGTCAAATGA chr6:38642265-38642444 40 4.61e-06 CTCTTAACCC GGCTAAAGGGCCACTGAGAT TCCCCTAGTG chr7:103970880-103971429 384 6.92e-06 CCTATATTTC AGCCTGAGATCATCAGTGAC ATAAAAACCA chr7:79146584-79147402 420 7.90e-06 CGAGCAGGTG AATCTGAGAGGCTCTGTGAA TCGTGAACTG chr7:83097025-83097574 98 7.90e-06 AATTTTGGAA AGGGAAAGATAGCCAAAGAA TTTGCCAAGT chr7:67973719-67974268 334 7.90e-06 TGGTACAATA AGGAAGAAGGATCCAAAGAA ATCCAGCCAG chr7:97516597-97517551 19 1.02e-05 ACACAACCTT AGGAGGGGAAGGAGAGAGGA AGAGGGTTTT chr7:73056302-73056901 10 1.02e-05 TGTAGGTCC ATCCAAGGAAACAGAGACAT TGGGAAGTCA chr7:115626693-115627692 191 1.02e-05 AGAGAGGCCC AGTCACAAGAGCACTGAGAG AAGACCTCAC chr7:101500159-101500708 249 1.16e-05 GCCAGCTGAG TGACAGTGAGGAACAGAGCT TGCAGGTGGT chr7:95671176-95672125 411 1.16e-05 GAATAACACT GGCTAAAACAGCTCTGAGAA AGCACAAGGT chr7:66763679-66764228 352 1.32e-05 TCCTTGTTAC ATGCAGAGGAAGACCGTGAG AGCTCGTCTC chr7:109488686-109489235 103 1.69e-05 GGCCAAACTC AGCCCAGACTACCCAGAGAA CCCCAATCCA chr7:66197881-66198688 86 1.91e-05 GCCATCTGGG GTGCAGAGGGGATGTGAGCT TCCCTCCCTA chr7:83063963-83064847 823 1.91e-05 TTTTTCTTTT TTGTAGAGGAACACAGAGCT AAGAGAGATG chr7:66157214-66157813 185 1.91e-05 TAGAAAGGTA GGACTGGAAGGCAGAGTGTA ATATCCCAGA chr7:100188089-100188638 199 1.91e-05 TGCAAGGGAC AGAATGAACTGCACAGGGGA GGGAAAGAGC chr7:73448326-73449091 223 2.15e-05 CCACCACTCT AGCCACAGGGCCACAGTCAC CACCTCATAC chr7:104118784-104119383 388 2.15e-05 GATTTTAGAG ATACAAAGAAAGAGAGACAA GCTCTGTGTG chr7:70093382-70093831 232 2.42e-05 CCTGGCAAAG AGTGAGAGGGGGAAAAAGAA ATCTTATTGA chr7:101718758-101719307 249 2.42e-05 CTCACTTTCT ATGGTGAAGAAAACAGTGAC CCTGCCTGGT chr6:38765236-38765385 46 2.42e-05 AGGACAAGGA AGGGCGTGGGGGCCAGGGCA GTGCAAAGGC chrX:7948807-7949230 56 2.72e-05 TCAAACTTAC AGCATGTGGTGGACCGAGGA AGGAAAATTG chr7:108330771-108331370 121 2.72e-05 CAGTGTGAGT AACAAATAAAGCACTGAGAT CTGTGTAAAT chr7:70514420-70514969 122 3.06e-05 AGTAGAGAAG AGCCAGGGAGGGGCATAGCT GTTTTCCCAC chr7:100578576-100579125 34 3.06e-05 CATGACAAAC AGAATAGAGATCAGAGTGAA TAGAACACAT chr7:90158171-90158971 613 3.06e-05 GAAAAGTCTA GGGCTGTAAAGCCGAGTGGG AAGTAAGAGT chr7:107560514-107561063 398 3.06e-05 TGCAAATAAT AGACAGAAGGAATCAGAACA GAGGTTGACC chr7:68211440-68211989 356 3.43e-05 TGCACATGCA TGCATGGGAGGGGGTGGGAA AAGAGATTGC chr7:108796541-108797740 775 3.43e-05 ATATTACTGT GGCCAAAGAAACTCCATGAA CATATGGATT chr8:122246044-122246311 229 3.83e-05 GATGGGAGAG GGCGCAAGGGACAGAAAGAC ACAGCAAAGA chr8:122233392-122233542 20 3.83e-05 CAAGTGTGCC TGGCAGAGTGGAGCAGGGAC TGTGACATGT chr7:69829229-69829778 208 4.29e-05 TCAGGACTTC GGCAAAGGTGCCGCAGAGCA TTCTGAAGTC chr7:81231583-81232132 391 4.29e-05 CAAACTCCAC AGAATGGGGAAAACTATGGA GGGTCTTGGG chr7:123986234-123986783 237 4.29e-05 TTGTGCTTTG AGCAAGAAGAGCTGGGACAA AACTGGAGCT chr2:27152224-27152414 33 4.79e-05 GGGGGAGCCA AGGGTCAGAGGCTCAAAGGA ACTAGCCTGG chr6:38832190-38832724 453 5.34e-05 AATACAATTC AGGATGTATTTCACTGAGAA AAACATGTCT chr7:91474804-91475403 536 5.94e-05 CCCTAGAGGT AGAAAGTGAGACAAAGACAG ATTGTTTTGT chr2:27364525-27364764 52 5.94e-05 TACCTGGTCA ATAAAGAGGAAGACATTGAG TGGACCTTCT chr7:105708790-105709239 259 6.61e-05 GACTTTTATC AGGTAGGGAAGATGAGGCAT CATAAAGGGA chr7:108272128-108272677 361 6.61e-05 TCTGCCAACA GGGACAGGAGACACTTTGAA TGGAAGTTGA chr6:88322313-88322595 187 6.61e-05 GGCCGGTGTT ATCCAAAGCAGGTGAGAAAA CATGAAATAG chr7:106294602-106295451 718 7.34e-05 TTAGACTTGC AGTATAGAGGACACAGAAAT AACTACAGTG chr7:112880175-112880824 232 8.15e-05 GAATCGGTTA GGACAGAGGAGAGGAGGCAG TTTCAATCAG chr7:70144673-70145243 325 9.03e-05 TTATAACTTG AAGATGGGAAAATGAAAGAG AAGTTGTCAA chr7:67296236-67296942 93 9.03e-05 ACCCTCCCAG TGGCAAGGATGAAGTGACAC ATAATCCTGT chr7:66280165-66280714 380 1.00e-04 TTGTCCTCTT GGGATGTAAGACTCTGGGGC AGGTGAGTAG chr6:38666599-38666977 243 1.00e-04 GGCATGATTA GTTAAGAGGAAGCCAGAGTG GAATCAGTGG chr7:105547945-105548594 359 1.11e-04 TGATAGAGGA GGCACAAGCTGCCCAGTCAA CTTGAGTCCA chr7:71502866-71503415 243 1.11e-04 TGTGTGTATG TGCCAGTGGGTTTCAAAGAA AACTCTCGAG chr7:66749727-66750276 220 1.22e-04 TCAAGATTCA AGCAAAAAAATTCCAGAGCA GTTTTTTTTT chr6:38856153-38856302 4 1.22e-04 CAC ATCCAGGACCAAACAGAGCT TGTCCTCAGT chr7:63590798-63591247 214 1.48e-04 GCTGCAGATC CCCATGAAGGGCCCTGAGAA CATAACGGAG chr6:38699011-38699301 269 1.48e-04 CTGCTGCTGC TGGAAGTGGGGGCCTGGCCG CT chr7:71389204-71389753 225 1.79e-04 TGTCCTGGAA AGCCAAGAACCCAGTAACAA GTTTGTCATT chr7:127847549-127848498 5 1.97e-04 GGGC AGGGGGAGATGATCAAAGGA GATGATCAAT chr7:125090817-125092066 613 1.97e-04 ACCTAACTTT ATCCTGAGACTCTCAATGAG TGTTCAGACC chr7:114361954-114362553 25 1.97e-04 TGCATCTTAT TAGCAATGCAACACTGGGCA GATTATGCTT chr6:88203909-88204133 96 1.97e-04 CTGTTAGTGC AGTAAAAGGCACTGAGTGTT TAGATTTTAA chr7:124855920-124856569 72 2.16e-04 TCTGAGCCAT GGCCAGTGTAGGTCTGTGTC TATAAGCAAT chr7:65300367-65300916 217 2.16e-04 TCAATTCATC ATCTAGGAAGGATCTAGGAA GGCTATGAAA chr7:92391770-92392570 279 2.59e-04 AATCTCTCCT AAGGTGTAAACCAGAGTGGA AATGCTAGCT chr7:92271035-92271634 119 3.10e-04 TTCTATTACT AGCATATGAAACAGAATAAT AACACAAGAA chr7:105413005-105413554 413 3.38e-04 GTACTGTAAC CTGCTGGAGAGCACTGGGGG ATTGGGCAGT chr7:92399295-92399894 289 3.68e-04 GAAGGATGGA GGCCAAGGGGTACCTTTGCA CACCATCATT chr7:63499316-63500135 17 4.01e-04 AGTGGCTGCC TGACCAAGAGACTGAATGAT TGCTAACTTT chr7:69362498-69363047 72 4.01e-04 GACAGAGTCC TTGCTGAGGGCATCTAGGAT TCTAGACACT chr7:110877085-110877684 279 4.74e-04 TTCTCAGACA TGCCAGGGCTTGACATAGGG AGGTACCCTG chr7:71036918-71037467 284 4.74e-04 CCATCGTGCT ATTCTGAAATACACTTTGAG ACAAAAATGC chr7:69891296-69891995 531 5.15e-04 ATCTCGTTCC TGGCTGAAGTCCACAGCCAG CAGTGACAAC chr7:76990537-76991363 105 5.59e-04 GAGTATTGAA TGGAAAAGCTTATGTAAGAA CACTGCTGGG chr7:69959582-69960631 168 6.06e-04 TCCATTCCAC ATCAAATAGAAATGATAGGA AATTATGTTA chr7:123713721-123714270 50 6.06e-04 CTCTCTAACT GAGCTAAACAGCTGTGAGGC TTAGAGGACT chr8:122375539-122375755 192 6.56e-04 GGGTGGTTTC ACTTTGAGGAAGACAGGCAG CCCCT chr6:38757479-38757763 239 7.09e-04 TGGGTAAATG AACATGAGCCGGAGTGTCAG TGCTTCCCTT chrX:150565848-150566190 52 7.67e-04 AACAATTTTC TGGATGAGAAAGAAAGAATA GTAATCTCTC chr7:82971630-82972179 135 8.28e-04 TGGTGACTGT AGTGTGGAGGAGAGTTAGCT GTGTTAGTAT chr7:107696305-107696854 145 1.04e-03 GTGGGTTTGT AGCTCAGAGTCATCAGGGAC TGGTGGCCTT chr7:111460560-111461109 157 1.59e-03 ATACAGATGT GGTAAAGATAGCAAAGGGTA TCTTCAAGTG chr7:63720196-63720745 52 6.30e-03 CTGCCTCTGT AGGAAGAGTCCAGGTGGCTC CTCTGTGGTG chrX:150846672-150846828 99 1.50e-02 AATGTCTGGA ACGTTGAAATGTCCTATAAA TGGTACCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:100681486-100682407 8.5e-09 548_[+1]_353 chr7:127921931-127922530 1.1e-08 8_[+1]_571 chr7:71945397-71946337 5e-08 404_[+1]_516 chr7:70413249-70413798 7.4e-08 20_[+1]_509 chr7:92264468-92265017 2.8e-07 218_[+1]_311 chr7:66468915-66469464 2.8e-07 438_[+1]_91 chr7:115098190-115098739 3.9e-07 18_[+1]_511 chr7:104084169-104084518 3.9e-07 40_[+1]_289 chr7:107074995-107075594 5.5e-07 85_[+1]_494 chr7:66578070-66578669 7.6e-07 174_[+1]_405 chr7:69707316-69707865 1.2e-06 63_[+1]_466 chr8:122108965-122109228 3.5e-06 89_[+1]_154 chr7:70311472-70312021 4e-06 1_[+1]_528 chr7:81826094-81826693 4.6e-06 344_[+1]_235 chr6:38642265-38642444 4.6e-06 39_[+1]_120 chr7:103970880-103971429 6.9e-06 383_[+1]_146 chr7:79146584-79147402 7.9e-06 419_[+1]_379 chr7:83097025-83097574 7.9e-06 97_[+1]_432 chr7:67973719-67974268 7.9e-06 333_[+1]_196 chr7:97516597-97517551 1e-05 18_[+1]_916 chr7:73056302-73056901 1e-05 9_[+1]_570 chr7:115626693-115627692 1e-05 190_[+1]_789 chr7:101500159-101500708 1.2e-05 248_[+1]_281 chr7:95671176-95672125 1.2e-05 410_[+1]_519 chr7:66763679-66764228 1.3e-05 351_[+1]_178 chr7:109488686-109489235 1.7e-05 102_[+1]_427 chr7:66197881-66198688 1.9e-05 85_[+1]_702 chr7:83063963-83064847 1.9e-05 822_[+1]_42 chr7:66157214-66157813 1.9e-05 184_[+1]_395 chr7:100188089-100188638 1.9e-05 198_[+1]_331 chr7:73448326-73449091 2.2e-05 222_[+1]_523 chr7:104118784-104119383 2.2e-05 387_[+1]_192 chr7:70093382-70093831 2.4e-05 231_[+1]_198 chr7:101718758-101719307 2.4e-05 248_[+1]_281 chr6:38765236-38765385 2.4e-05 45_[+1]_84 chrX:7948807-7949230 2.7e-05 55_[+1]_348 chr7:108330771-108331370 2.7e-05 120_[+1]_459 chr7:70514420-70514969 3.1e-05 121_[+1]_408 chr7:100578576-100579125 3.1e-05 33_[+1]_496 chr7:90158171-90158971 3.1e-05 612_[+1]_168 chr7:107560514-107561063 3.1e-05 397_[+1]_132 chr7:68211440-68211989 3.4e-05 355_[+1]_174 chr7:108796541-108797740 3.4e-05 774_[+1]_405 chr8:122246044-122246311 3.8e-05 228_[+1]_19 chr8:122233392-122233542 3.8e-05 19_[+1]_111 chr7:69829229-69829778 4.3e-05 207_[+1]_322 chr7:81231583-81232132 4.3e-05 390_[+1]_139 chr7:123986234-123986783 4.3e-05 236_[+1]_293 chr2:27152224-27152414 4.8e-05 32_[+1]_138 chr6:38832190-38832724 5.3e-05 452_[+1]_62 chr7:91474804-91475403 5.9e-05 535_[+1]_44 chr2:27364525-27364764 5.9e-05 51_[+1]_168 chr7:105708790-105709239 6.6e-05 258_[+1]_171 chr7:108272128-108272677 6.6e-05 360_[+1]_169 chr6:88322313-88322595 6.6e-05 186_[+1]_76 chr7:106294602-106295451 7.3e-05 717_[+1]_112 chr7:112880175-112880824 8.1e-05 231_[+1]_398 chr7:70144673-70145243 9e-05 324_[+1]_226 chr7:67296236-67296942 9e-05 92_[+1]_594 chr7:66280165-66280714 0.0001 379_[+1]_150 chr6:38666599-38666977 0.0001 242_[+1]_116 chr7:105547945-105548594 0.00011 358_[+1]_271 chr7:71502866-71503415 0.00011 242_[+1]_287 chr7:66749727-66750276 0.00012 219_[+1]_310 chr6:38856153-38856302 0.00012 3_[+1]_126 chr7:63590798-63591247 0.00015 213_[+1]_216 chr6:38699011-38699301 0.00015 268_[+1]_2 chr7:71389204-71389753 0.00018 224_[+1]_305 chr7:127847549-127848498 0.0002 4_[+1]_925 chr7:125090817-125092066 0.0002 612_[+1]_617 chr7:114361954-114362553 0.0002 24_[+1]_555 chr6:88203909-88204133 0.0002 95_[+1]_109 chr7:124855920-124856569 0.00022 71_[+1]_558 chr7:65300367-65300916 0.00022 216_[+1]_313 chr7:92391770-92392570 0.00026 278_[+1]_502 chr7:92271035-92271634 0.00031 118_[+1]_461 chr7:105413005-105413554 0.00034 412_[+1]_117 chr7:92399295-92399894 0.00037 288_[+1]_291 chr7:63499316-63500135 0.0004 16_[+1]_783 chr7:69362498-69363047 0.0004 71_[+1]_458 chr7:110877085-110877684 0.00047 278_[+1]_301 chr7:71036918-71037467 0.00047 283_[+1]_246 chr7:69891296-69891995 0.00052 530_[+1]_149 chr7:76990537-76991363 0.00056 104_[+1]_702 chr7:69959582-69960631 0.00061 167_[+1]_862 chr7:123713721-123714270 0.00061 49_[+1]_480 chr8:122375539-122375755 0.00066 191_[+1]_5 chr6:38757479-38757763 0.00071 238_[+1]_26 chrX:150565848-150566190 0.00077 51_[+1]_271 chr7:82971630-82972179 0.00083 134_[+1]_395 chr7:107696305-107696854 0.001 144_[+1]_385 chr7:111460560-111461109 0.0016 156_[+1]_373 chr7:63720196-63720745 0.0063 51_[+1]_478 chrX:150846672-150846828 0.015 98_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=94 chr7:100681486-100682407 ( 549) AGCCAGGGTAACACAGAGAA 1 chr7:127921931-127922530 ( 9) AGCCAGGGCTACACAGAGAA 1 chr7:71945397-71946337 ( 405) AGGGAGAGGGAGAGAGAGAG 1 chr7:70413249-70413798 ( 21) AGGCTGTGAGGCACTGAGGA 1 chr7:92264468-92265017 ( 219) GGTCAGAGGGGCAGAGTGCA 1 chr7:66468915-66469464 ( 439) GGCCAGAGTACCAGAGAGAA 1 chr7:115098190-115098739 ( 19) GGGGAGTGGGGCACAGAGTA 1 chr7:104084169-104084518 ( 41) AGCATAGGAGGCACAAAGAG 1 chr7:107074995-107075594 ( 86) AACAAAAGGAACCCAGAGAA 1 chr7:66578070-66578669 ( 175) AGGGAGAAGAAACCAGAGAG 1 chr7:69707316-69707865 ( 64) TGGAAGTGGGGAAGAGAGAT 1 chr8:122108965-122109228 ( 90) GGCCAGAGGTCATGAGAGCA 1 chr7:70311472-70312021 ( 2) AGGGTAAGCAGCCCTGTGAA 1 chr7:81826094-81826693 ( 345) ACGCAGGGAGACACAGTGTA 1 chr6:38642265-38642444 ( 40) GGCTAAAGGGCCACTGAGAT 1 chr7:103970880-103971429 ( 384) AGCCTGAGATCATCAGTGAC 1 chr7:79146584-79147402 ( 420) AATCTGAGAGGCTCTGTGAA 1 chr7:83097025-83097574 ( 98) AGGGAAAGATAGCCAAAGAA 1 chr7:67973719-67974268 ( 334) AGGAAGAAGGATCCAAAGAA 1 chr7:97516597-97517551 ( 19) AGGAGGGGAAGGAGAGAGGA 1 chr7:73056302-73056901 ( 10) ATCCAAGGAAACAGAGACAT 1 chr7:115626693-115627692 ( 191) AGTCACAAGAGCACTGAGAG 1 chr7:101500159-101500708 ( 249) TGACAGTGAGGAACAGAGCT 1 chr7:95671176-95672125 ( 411) GGCTAAAACAGCTCTGAGAA 1 chr7:66763679-66764228 ( 352) ATGCAGAGGAAGACCGTGAG 1 chr7:109488686-109489235 ( 103) AGCCCAGACTACCCAGAGAA 1 chr7:66197881-66198688 ( 86) GTGCAGAGGGGATGTGAGCT 1 chr7:83063963-83064847 ( 823) TTGTAGAGGAACACAGAGCT 1 chr7:66157214-66157813 ( 185) GGACTGGAAGGCAGAGTGTA 1 chr7:100188089-100188638 ( 199) AGAATGAACTGCACAGGGGA 1 chr7:73448326-73449091 ( 223) AGCCACAGGGCCACAGTCAC 1 chr7:104118784-104119383 ( 388) ATACAAAGAAAGAGAGACAA 1 chr7:70093382-70093831 ( 232) AGTGAGAGGGGGAAAAAGAA 1 chr7:101718758-101719307 ( 249) ATGGTGAAGAAAACAGTGAC 1 chr6:38765236-38765385 ( 46) AGGGCGTGGGGGCCAGGGCA 1 chrX:7948807-7949230 ( 56) AGCATGTGGTGGACCGAGGA 1 chr7:108330771-108331370 ( 121) AACAAATAAAGCACTGAGAT 1 chr7:70514420-70514969 ( 122) AGCCAGGGAGGGGCATAGCT 1 chr7:100578576-100579125 ( 34) AGAATAGAGATCAGAGTGAA 1 chr7:90158171-90158971 ( 613) GGGCTGTAAAGCCGAGTGGG 1 chr7:107560514-107561063 ( 398) AGACAGAAGGAATCAGAACA 1 chr7:68211440-68211989 ( 356) TGCATGGGAGGGGGTGGGAA 1 chr7:108796541-108797740 ( 775) GGCCAAAGAAACTCCATGAA 1 chr8:122246044-122246311 ( 229) GGCGCAAGGGACAGAAAGAC 1 chr8:122233392-122233542 ( 20) TGGCAGAGTGGAGCAGGGAC 1 chr7:69829229-69829778 ( 208) GGCAAAGGTGCCGCAGAGCA 1 chr7:81231583-81232132 ( 391) AGAATGGGGAAAACTATGGA 1 chr7:123986234-123986783 ( 237) AGCAAGAAGAGCTGGGACAA 1 chr2:27152224-27152414 ( 33) AGGGTCAGAGGCTCAAAGGA 1 chr6:38832190-38832724 ( 453) AGGATGTATTTCACTGAGAA 1 chr7:91474804-91475403 ( 536) AGAAAGTGAGACAAAGACAG 1 chr2:27364525-27364764 ( 52) ATAAAGAGGAAGACATTGAG 1 chr7:105708790-105709239 ( 259) AGGTAGGGAAGATGAGGCAT 1 chr7:108272128-108272677 ( 361) GGGACAGGAGACACTTTGAA 1 chr6:88322313-88322595 ( 187) ATCCAAAGCAGGTGAGAAAA 1 chr7:106294602-106295451 ( 718) AGTATAGAGGACACAGAAAT 1 chr7:112880175-112880824 ( 232) GGACAGAGGAGAGGAGGCAG 1 chr7:70144673-70145243 ( 325) AAGATGGGAAAATGAAAGAG 1 chr7:67296236-67296942 ( 93) TGGCAAGGATGAAGTGACAC 1 chr7:66280165-66280714 ( 380) GGGATGTAAGACTCTGGGGC 1 chr6:38666599-38666977 ( 243) GTTAAGAGGAAGCCAGAGTG 1 chr7:105547945-105548594 ( 359) GGCACAAGCTGCCCAGTCAA 1 chr7:71502866-71503415 ( 243) TGCCAGTGGGTTTCAAAGAA 1 chr7:66749727-66750276 ( 220) AGCAAAAAAATTCCAGAGCA 1 chr6:38856153-38856302 ( 4) ATCCAGGACCAAACAGAGCT 1 chr7:63590798-63591247 ( 214) CCCATGAAGGGCCCTGAGAA 1 chr6:38699011-38699301 ( 269) TGGAAGTGGGGGCCTGGCCG 1 chr7:71389204-71389753 ( 225) AGCCAAGAACCCAGTAACAA 1 chr7:127847549-127848498 ( 5) AGGGGGAGATGATCAAAGGA 1 chr7:125090817-125092066 ( 613) ATCCTGAGACTCTCAATGAG 1 chr7:114361954-114362553 ( 25) TAGCAATGCAACACTGGGCA 1 chr6:88203909-88204133 ( 96) AGTAAAAGGCACTGAGTGTT 1 chr7:124855920-124856569 ( 72) GGCCAGTGTAGGTCTGTGTC 1 chr7:65300367-65300916 ( 217) ATCTAGGAAGGATCTAGGAA 1 chr7:92391770-92392570 ( 279) AAGGTGTAAACCAGAGTGGA 1 chr7:92271035-92271634 ( 119) AGCATATGAAACAGAATAAT 1 chr7:105413005-105413554 ( 413) CTGCTGGAGAGCACTGGGGG 1 chr7:92399295-92399894 ( 289) GGCCAAGGGGTACCTTTGCA 1 chr7:63499316-63500135 ( 17) TGACCAAGAGACTGAATGAT 1 chr7:69362498-69363047 ( 72) TTGCTGAGGGCATCTAGGAT 1 chr7:110877085-110877684 ( 279) TGCCAGGGCTTGACATAGGG 1 chr7:71036918-71037467 ( 284) ATTCTGAAATACACTTTGAG 1 chr7:69891296-69891995 ( 531) TGGCTGAAGTCCACAGCCAG 1 chr7:76990537-76991363 ( 105) TGGAAAAGCTTATGTAAGAA 1 chr7:69959582-69960631 ( 168) ATCAAATAGAAATGATAGGA 1 chr7:123713721-123714270 ( 50) GAGCTAAACAGCTGTGAGGC 1 chr8:122375539-122375755 ( 192) ACTTTGAGGAAGACAGGCAG 1 chr6:38757479-38757763 ( 239) AACATGAGCCGGAGTGTCAG 1 chrX:150565848-150566190 ( 52) TGGATGAGAAAGAAAGAATA 1 chr7:82971630-82972179 ( 135) AGTGTGGAGGAGAGTTAGCT 1 chr7:107696305-107696854 ( 145) AGCTCAGAGTCATCAGGGAC 1 chr7:111460560-111461109 ( 157) GGTAAAGATAGCAAAGGGTA 1 chr7:63720196-63720745 ( 52) AGGAAGAGTCCAGGTGGCTC 1 chrX:150846672-150846828 ( 99) ACGTTGAAATGTCCTATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 52126 bayes= 9.11252 E= 1.6e-012 113 -337 4 -86 -168 -237 169 -76 -122 80 81 -131 36 95 -66 -176 105 -156 -336 24 27 -278 155 -1320 93 -1320 40 -59 27 -1320 162 -1320 41 -67 93 -176 49 -178 77 -68 45 -78 93 -176 -16 119 -4 -276 90 -46 -177 -12 -268 151 60 -1320 123 -278 -435 14 -43 -1320 171 -176 99 -437 -36 -6 -210 -46 183 -1320 113 -46 -55 -159 90 -91 -11 -76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 94 E= 1.6e-012 0.595745 0.021277 0.223404 0.159574 0.085106 0.042553 0.702128 0.170213 0.117021 0.382979 0.382979 0.117021 0.351064 0.425532 0.138298 0.085106 0.563830 0.074468 0.021277 0.340426 0.329787 0.031915 0.638298 0.000000 0.521277 0.000000 0.287234 0.191489 0.329787 0.000000 0.670213 0.000000 0.361702 0.138298 0.414894 0.085106 0.382979 0.063830 0.372340 0.180851 0.372340 0.127660 0.414894 0.085106 0.244681 0.500000 0.212766 0.042553 0.510638 0.159574 0.063830 0.265957 0.042553 0.627660 0.329787 0.000000 0.638298 0.031915 0.010638 0.319149 0.202128 0.000000 0.712766 0.085106 0.542553 0.010638 0.170213 0.276596 0.063830 0.159574 0.776596 0.000000 0.595745 0.159574 0.148936 0.095745 0.510638 0.117021 0.202128 0.170213 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AG]G[CG][CA][AT][GA][AG][GA][GA][AG][GA][CAG][AT][CG][AT][GA][AT]GA[AG] -------------------------------------------------------------------------------- Time 99.30 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 21 sites = 39 llr = 438 E-value = 2.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2:2:11:3:112211:111:2 pos.-specific C :714383684:5482732278 probability G :214:::::1211::21231: matrix T 81737171157242715652: bits 2.2 2.0 1.8 1.5 * Relative 1.3 * * Entropy 1.1 * ** * * * ** (16.2 bits) 0.9 ** ***** *** ** 0.7 *** ***** * *** ** 0.4 ************ *** * ** 0.2 ********************* 0.0 --------------------- Multilevel TCTCTCTCCTTCCCTCTTTCC consensus GC CA CGAT C CGGT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr7:125090817-125092066 209 2.65e-10 CCAAACTCAT TCTCTCTCCCTCTCCCTCTCC CCCCTCTCTC chr7:105547945-105548594 464 3.95e-09 ATGGCTGAGG TCTCTCCCCTTACCTCTCCCC CAGGGTAAGG chr7:70514420-70514969 460 1.16e-08 CCACCGGGTT TCCCTCCCCCTCCCTCCTTTC TAATCCTGCA chr7:79146584-79147402 213 2.39e-08 TCGCTCCATC TCTGCCTCCGTCTCTGTCTCC ATCTCCCCCC chr7:104118784-104119383 204 3.15e-08 GGAATTCAGT TTTCTCCACCTTCCTCTTTCC CTAAGCTTCA chr2:27364525-27364764 75 9.04e-08 CATTGAGTGG ACCTTCTACTTCCCTCCTGCC AACCTACCTA chr7:66197881-66198688 198 1.03e-07 GCTGTGGTTC TGTGCCTCCTGCCCACTCTCC CAGCCCTCAG chr7:108272128-108272677 336 2.39e-07 GTGATGATTC TGTCTCTACCTCTCCTCTGCC AACAGGGACA chr7:83063963-83064847 726 3.01e-07 TCTTTCTTTC TTTCTTTCCTTCCTTCCTTCC TTCCTTCCTT chr7:63499316-63500135 316 6.57e-07 GTGGCTTCTG TCTGTCTTCCTCTCTCTACCA CACTTGTGCA chr7:66578070-66578669 240 7.31e-07 CACCACTCAC ACAGTCTCCTGCTCCCAGGCC AGTACCTCCC chrX:7948807-7949230 16 8.13e-07 GAATGGGAGC TCAGCCTACCTGTCCCCCTCC ACCGAGTCAT chr7:105708790-105709239 343 1.00e-06 ACCCATATCA TCTCTCCCCTTAACACGTGTC CTCCCAGGAG chr7:106294602-106295451 671 1.00e-06 AGTTTAAAAC TCTGCCTACATCTCTCATCTC TCCAGTTCTT chr7:71389204-71389753 105 1.00e-06 AGAGATGAAT TCTTTCTCCGGCACCCTTGTA GACTTCACTT chr2:27152224-27152414 69 1.00e-06 CTGGGTTCTG TCTGTCTCCCTCACTGTGTGA TCTTGCACAA chr7:100681486-100682407 755 1.11e-06 TAGCTCTCCT TGTGTCCCCTCATCTCATTCC TAGGGAGGAA chr7:111460560-111461109 424 1.11e-06 TGACTCTCCA TCTGTCTCCTTAACTGGCTCA AGCCCTCCAC chr7:69891296-69891995 304 2.03e-06 GTCTCCATGG TCATTTTCCTTCCTTCTGTTC GCTTCTCCCA chr7:124855920-124856569 492 2.24e-06 TGCCAAACAA TTTGTATCCTTAGCCCTTGCC AATGGCTACA chr7:69959582-69960631 907 2.46e-06 CAGAGGACAG TCTTACTACCTCCCTCGTGTA TAAGACATAT chr7:63590798-63591247 272 2.71e-06 CTGCAAACTT ACTTTCTCTCTCTCTCCAGTC AGCCTGGATT chr7:92399295-92399894 209 3.59e-06 CCCATCTTAT TCTTTCCACCATCCTCTGTGC TTTATCCCTC chr8:122375539-122375755 98 3.94e-06 ATGTGTCTGA ACTTCATCCCTTTCTGTGGCC CAATTAATGC chr7:76990537-76991363 206 3.94e-06 GAAGAATCAC TGTCTCTCCTATGCTCTTACC ATTATATTAG chr7:63720196-63720745 131 5.18e-06 GAGGCTTCCT TGTTTCTCTTGCTTTTTTTCC TCTCATTTTG chr7:69362498-69363047 142 5.66e-06 TGCTTTTTAA TCCCCATCTGTACCTCTTGCC GTACAGAAAT chr7:81826094-81826693 115 6.75e-06 GCCTTCTTCC TCAGTCCCCCAAATCCCTGCC CGGCCTATCT chr7:92271035-92271634 253 7.37e-06 TAATTTGTGC TTGTTCTTCCTATCTCATGCC TTTAATATTG chr7:66468915-66469464 253 8.75e-06 CTGCCTGTTC TCAGCTCCCCGGCTTCCTTCC GTGCTTAGGA chr7:110877085-110877684 81 9.52e-06 CCATTTCCCC TCACTCCTCAGCCATCCTTCC TGTTTATGTG chr7:71945397-71946337 775 1.22e-05 TATCCTAATT TGTGTCTAACTCTCTGGTCCC CAGGGTAGAC chr7:66157214-66157813 341 1.69e-05 CACCACATTT AGGCCCTCCTGTCCTCTGGCA AAGGCTGCAT chr7:103970880-103971429 359 1.98e-05 TCTGGATACA TCTCCCCACTGGTCTCCTATA TTTCAGCCTG chr7:83097025-83097574 330 2.14e-05 GGTTAAATGG ATTGCCCTCTTCACTTTGTCC TTTGCTATGA chr7:108796541-108797740 549 2.14e-05 TACTCTTTCC TCTCTCTCTTTCTAAGTTCTC AGTGCTTTTA chr7:69829229-69829778 17 2.31e-05 GTGTATCTAA GCTCTATACTTTCCCCACTCC CATACTGGAA chr7:115098190-115098739 237 2.50e-05 ACTTTTGATG TCTTCTTCTGGCCTTCTGCCC ATATCAGTGT chr7:114361954-114362553 273 2.69e-05 TGATTATTCT TCTTACTACTTTAATTTTTCC TGTTTTTCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:125090817-125092066 2.6e-10 208_[+2]_1020 chr7:105547945-105548594 4e-09 463_[+2]_165 chr7:70514420-70514969 1.2e-08 459_[+2]_69 chr7:79146584-79147402 2.4e-08 212_[+2]_585 chr7:104118784-104119383 3.2e-08 203_[+2]_375 chr2:27364525-27364764 9e-08 74_[+2]_144 chr7:66197881-66198688 1e-07 197_[+2]_589 chr7:108272128-108272677 2.4e-07 335_[+2]_193 chr7:83063963-83064847 3e-07 725_[+2]_138 chr7:63499316-63500135 6.6e-07 315_[+2]_483 chr7:66578070-66578669 7.3e-07 239_[+2]_339 chrX:7948807-7949230 8.1e-07 15_[+2]_387 chr7:105708790-105709239 1e-06 342_[+2]_86 chr7:106294602-106295451 1e-06 670_[+2]_158 chr7:71389204-71389753 1e-06 104_[+2]_424 chr2:27152224-27152414 1e-06 68_[+2]_101 chr7:100681486-100682407 1.1e-06 754_[+2]_146 chr7:111460560-111461109 1.1e-06 423_[+2]_105 chr7:69891296-69891995 2e-06 303_[+2]_375 chr7:124855920-124856569 2.2e-06 491_[+2]_137 chr7:69959582-69960631 2.5e-06 906_[+2]_122 chr7:63590798-63591247 2.7e-06 271_[+2]_157 chr7:92399295-92399894 3.6e-06 208_[+2]_370 chr8:122375539-122375755 3.9e-06 97_[+2]_98 chr7:76990537-76991363 3.9e-06 205_[+2]_600 chr7:63720196-63720745 5.2e-06 130_[+2]_398 chr7:69362498-69363047 5.7e-06 141_[+2]_387 chr7:81826094-81826693 6.8e-06 114_[+2]_464 chr7:92271035-92271634 7.4e-06 252_[+2]_326 chr7:66468915-66469464 8.7e-06 252_[+2]_276 chr7:110877085-110877684 9.5e-06 80_[+2]_498 chr7:71945397-71946337 1.2e-05 774_[+2]_145 chr7:66157214-66157813 1.7e-05 340_[+2]_238 chr7:103970880-103971429 2e-05 358_[+2]_170 chr7:83097025-83097574 2.1e-05 329_[+2]_199 chr7:108796541-108797740 2.1e-05 548_[+2]_630 chr7:69829229-69829778 2.3e-05 16_[+2]_512 chr7:115098190-115098739 2.5e-05 236_[+2]_292 chr7:114361954-114362553 2.7e-05 272_[+2]_306 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=39 chr7:125090817-125092066 ( 209) TCTCTCTCCCTCTCCCTCTCC 1 chr7:105547945-105548594 ( 464) TCTCTCCCCTTACCTCTCCCC 1 chr7:70514420-70514969 ( 460) TCCCTCCCCCTCCCTCCTTTC 1 chr7:79146584-79147402 ( 213) TCTGCCTCCGTCTCTGTCTCC 1 chr7:104118784-104119383 ( 204) TTTCTCCACCTTCCTCTTTCC 1 chr2:27364525-27364764 ( 75) ACCTTCTACTTCCCTCCTGCC 1 chr7:66197881-66198688 ( 198) TGTGCCTCCTGCCCACTCTCC 1 chr7:108272128-108272677 ( 336) TGTCTCTACCTCTCCTCTGCC 1 chr7:83063963-83064847 ( 726) TTTCTTTCCTTCCTTCCTTCC 1 chr7:63499316-63500135 ( 316) TCTGTCTTCCTCTCTCTACCA 1 chr7:66578070-66578669 ( 240) ACAGTCTCCTGCTCCCAGGCC 1 chrX:7948807-7949230 ( 16) TCAGCCTACCTGTCCCCCTCC 1 chr7:105708790-105709239 ( 343) TCTCTCCCCTTAACACGTGTC 1 chr7:106294602-106295451 ( 671) TCTGCCTACATCTCTCATCTC 1 chr7:71389204-71389753 ( 105) TCTTTCTCCGGCACCCTTGTA 1 chr2:27152224-27152414 ( 69) TCTGTCTCCCTCACTGTGTGA 1 chr7:100681486-100682407 ( 755) TGTGTCCCCTCATCTCATTCC 1 chr7:111460560-111461109 ( 424) TCTGTCTCCTTAACTGGCTCA 1 chr7:69891296-69891995 ( 304) TCATTTTCCTTCCTTCTGTTC 1 chr7:124855920-124856569 ( 492) TTTGTATCCTTAGCCCTTGCC 1 chr7:69959582-69960631 ( 907) TCTTACTACCTCCCTCGTGTA 1 chr7:63590798-63591247 ( 272) ACTTTCTCTCTCTCTCCAGTC 1 chr7:92399295-92399894 ( 209) TCTTTCCACCATCCTCTGTGC 1 chr8:122375539-122375755 ( 98) ACTTCATCCCTTTCTGTGGCC 1 chr7:76990537-76991363 ( 206) TGTCTCTCCTATGCTCTTACC 1 chr7:63720196-63720745 ( 131) TGTTTCTCTTGCTTTTTTTCC 1 chr7:69362498-69363047 ( 142) TCCCCATCTGTACCTCTTGCC 1 chr7:81826094-81826693 ( 115) TCAGTCCCCCAAATCCCTGCC 1 chr7:92271035-92271634 ( 253) TTGTTCTTCCTATCTCATGCC 1 chr7:66468915-66469464 ( 253) TCAGCTCCCCGGCTTCCTTCC 1 chr7:110877085-110877684 ( 81) TCACTCCTCAGCCATCCTTCC 1 chr7:71945397-71946337 ( 775) TGTGTCTAACTCTCTGGTCCC 1 chr7:66157214-66157813 ( 341) AGGCCCTCCTGTCCTCTGGCA 1 chr7:103970880-103971429 ( 359) TCTCCCCACTGGTCTCCTATA 1 chr7:83097025-83097574 ( 330) ATTGCCCTCTTCACTTTGTCC 1 chr7:108796541-108797740 ( 549) TCTCTCTCTTTCTAAGTTCTC 1 chr7:69829229-69829778 ( 17) GCTCTATACTTTCCCCACTCC 1 chr7:115098190-115098739 ( 237) TCTTCTTCTGGCCTTCTGCCC 1 chr7:114361954-114362553 ( 273) TCTTACTACTTTAATTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 52032 bayes= 11.302 E= 2.8e-003 -83 -1193 -309 150 -1193 165 -28 -117 -83 -151 -209 131 -1193 71 72 -4 -241 36 -1193 120 -141 185 -1193 -149 -1193 36 -1193 131 5 148 -1193 -149 -341 194 -1193 -117 -241 81 -109 67 -183 -310 8 120 -41 129 -150 -69 -60 81 -209 41 -183 181 -1193 -91 -183 -10 -1193 131 -1193 176 -50 -149 -109 22 -109 83 -241 -29 -9 96 -241 -52 61 67 -1193 171 -209 -33 -60 190 -1193 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 39 E= 2.8e-003 0.153846 0.000000 0.025641 0.820513 0.000000 0.692308 0.179487 0.128205 0.153846 0.076923 0.051282 0.717949 0.000000 0.358974 0.358974 0.282051 0.051282 0.282051 0.000000 0.666667 0.102564 0.794872 0.000000 0.102564 0.000000 0.282051 0.000000 0.717949 0.282051 0.615385 0.000000 0.102564 0.025641 0.846154 0.000000 0.128205 0.051282 0.384615 0.102564 0.461538 0.076923 0.025641 0.230769 0.666667 0.205128 0.538462 0.076923 0.179487 0.179487 0.384615 0.051282 0.384615 0.076923 0.769231 0.000000 0.153846 0.076923 0.205128 0.000000 0.717949 0.000000 0.743590 0.153846 0.102564 0.128205 0.256410 0.102564 0.512821 0.051282 0.179487 0.205128 0.564103 0.051282 0.153846 0.333333 0.461538 0.000000 0.717949 0.051282 0.230769 0.179487 0.820513 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- TCT[CGT][TC]C[TC][CA]C[TC][TG][CA][CT]C[TC]C[TC][TG][TG][CT]C -------------------------------------------------------------------------------- Time 194.77 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 11 sites = 9 llr = 129 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::::16::::: pos.-specific C 7aaa93aaaaa probability G 1:::::::::: matrix T 2::::1::::: bits 2.2 *** ***** 2.0 *** ***** 1.8 *** ***** 1.5 **** ***** Relative 1.3 **** ***** Entropy 1.1 **** ***** (20.6 bits) 0.9 ***** ***** 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CCCCCACCCCC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr7:100578576-100579125 344 7.25e-08 TCCACAAATA CCCCCACCCCC TCTATTCTCT chr7:65300367-65300916 492 7.25e-08 CCTCCTATGG CCCCCACCCCC CAATCACATG chr7:81826094-81826693 246 7.25e-08 CTAAAACACG CCCCCACCCCC TTAAAAAGTT chr8:122375539-122375755 149 1.31e-07 GACCAGAACT CCCCCCCCCCC TTATATCAGT chr7:79146584-79147402 238 1.31e-07 GTCTCCATCT CCCCCCCCCCC CTCAAGCCAG chr7:67973719-67974268 393 1.31e-07 ATGGATATTA CCCCCCCCCCC CTGCAGTGGA chr7:111460560-111461109 492 4.52e-07 GAGTGGCCAG GCCCCACCCCC AGACTACACT chr7:69959582-69960631 87 7.73e-07 TTCCAGTGCC TCCCCTCCCCC AAAGAAAAAT chr7:100681486-100682407 367 9.67e-07 TATGAAGTGC TCCCAACCCCC ATATGCTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:100578576-100579125 7.3e-08 343_[+3]_195 chr7:65300367-65300916 7.3e-08 491_[+3]_47 chr7:81826094-81826693 7.3e-08 245_[+3]_343 chr8:122375539-122375755 1.3e-07 148_[+3]_57 chr7:79146584-79147402 1.3e-07 237_[+3]_570 chr7:67973719-67974268 1.3e-07 392_[+3]_146 chr7:111460560-111461109 4.5e-07 491_[+3]_47 chr7:69959582-69960631 7.7e-07 86_[+3]_952 chr7:100681486-100682407 9.7e-07 366_[+3]_544 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=11 seqs=9 chr7:100578576-100579125 ( 344) CCCCCACCCCC 1 chr7:65300367-65300916 ( 492) CCCCCACCCCC 1 chr7:81826094-81826693 ( 246) CCCCCACCCCC 1 chr8:122375539-122375755 ( 149) CCCCCCCCCCC 1 chr7:79146584-79147402 ( 238) CCCCCCCCCCC 1 chr7:67973719-67974268 ( 393) CCCCCCCCCCC 1 chr7:111460560-111461109 ( 492) GCCCCACCCCC 1 chr7:69959582-69960631 ( 87) TCCCCTCCCCC 1 chr7:100681486-100682407 ( 367) TCCCAACCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 52972 bayes= 13.3709 E= 2.5e+001 -982 160 -97 -38 -982 218 -982 -982 -982 218 -982 -982 -982 218 -982 -982 -129 201 -982 -982 102 60 -982 -138 -982 218 -982 -982 -982 218 -982 -982 -982 218 -982 -982 -982 218 -982 -982 -982 218 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 9 E= 2.5e+001 0.000000 0.666667 0.111111 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.555556 0.333333 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CT]CCCC[AC]CCCCC -------------------------------------------------------------------------------- Time 287.72 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 25 sites = 7 llr = 149 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A :9:6413:a1:47696:3::31141 pos.-specific C a:::1:79:::11::::613::9:: probability G ::7414:1:9a114:4a1:769::9 matrix T :13:34:::::3::1:::9:1::6: bits 2.2 * * * 2.0 * * * * 1.8 * * * * 1.5 * **** * ** * Relative 1.3 *** ***** * * ** ** * Entropy 1.1 **** ***** **** ** ** * (30.7 bits) 0.9 **** ***** ***** ** **** 0.7 **** ***** ************* 0.4 **** ****** ************* 0.2 **** ****** ************* 0.0 ------------------------- Multilevel CAGAAGCCAGGAAAAAGCTGGGCTG consensus TGTTA T G G A CA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:68211440-68211989 168 1.23e-14 TTCAGGTCGT CAGAAGCCAGGTAAAGGCTGGGCTG GTGTGGCAGC chr7:101718758-101719307 442 3.27e-12 ACTAGCCAAC CAGGTGACAGGTAAAGGATGGGCTG GCACAACAGT chr7:66157214-66157813 275 1.08e-11 GCTTGGCAAA CAGAAGCCAAGGAGAAGCTCGGCTG CGGAAGAGAA chr7:110877085-110877684 13 2.57e-10 CCTGTGGCTC CATACAACAGGAAAAAGCTGGGAAG CACCGCTGAA chr7:104084169-104084518 267 6.60e-10 AGAATGAGTG CAGAGTCCAGGCCAAAGGTGAGCAA CACGATGGAC chr6:38642265-38642444 88 8.93e-10 AGATCACTGG CTGGTTCCAGGAAGTGGCCCAGCAG GAACCCTGAC chr7:63590798-63591247 425 1.81e-09 GCAAAGGATG CATGATCGAGGAGGAAGATGTACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:68211440-68211989 1.2e-14 167_[+4]_357 chr7:101718758-101719307 3.3e-12 441_[+4]_83 chr7:66157214-66157813 1.1e-11 274_[+4]_300 chr7:110877085-110877684 2.6e-10 12_[+4]_562 chr7:104084169-104084518 6.6e-10 266_[+4]_58 chr6:38642265-38642444 8.9e-10 87_[+4]_67 chr7:63590798-63591247 1.8e-09 424_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=25 seqs=7 chr7:68211440-68211989 ( 168) CAGAAGCCAGGTAAAGGCTGGGCTG 1 chr7:101718758-101719307 ( 442) CAGGTGACAGGTAAAGGATGGGCTG 1 chr7:66157214-66157813 ( 275) CAGAAGCCAAGGAGAAGCTCGGCTG 1 chr7:110877085-110877684 ( 13) CATACAACAGGAAAAAGCTGGGAAG 1 chr7:104084169-104084518 ( 267) CAGAGTCCAGGCCAAAGGTGAGCAA 1 chr6:38642265-38642444 ( 88) CTGGTTCCAGGAAGTGGCCCAGCAG 1 chr7:63590798-63591247 ( 425) CATGATCGAGGAGGAAGATGTACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 51656 bayes= 13.4549 E= 1.3e+002 -945 218 -945 -945 165 -945 -945 -102 -945 -945 171 -2 107 -945 97 -945 65 -62 -61 -2 -93 -945 97 57 7 170 -945 -945 -945 196 -61 -945 187 -945 -945 -945 -93 -945 197 -945 -945 -945 220 -945 65 -62 -61 -2 139 -62 -61 -945 107 -945 97 -945 165 -945 -945 -102 107 -945 97 -945 -945 -945 220 -945 7 138 -61 -945 -945 -62 -945 157 -945 38 171 -945 7 -945 139 -102 -93 -945 197 -945 -93 196 -945 -945 65 -945 -945 98 -93 -945 197 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 7 E= 1.3e+002 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 0.714286 0.285714 0.571429 0.000000 0.428571 0.000000 0.428571 0.142857 0.142857 0.285714 0.142857 0.000000 0.428571 0.428571 0.285714 0.714286 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.142857 0.142857 0.285714 0.714286 0.142857 0.142857 0.000000 0.571429 0.000000 0.428571 0.000000 0.857143 0.000000 0.000000 0.142857 0.571429 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.571429 0.142857 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.285714 0.714286 0.000000 0.285714 0.000000 0.571429 0.142857 0.142857 0.000000 0.857143 0.000000 0.142857 0.857143 0.000000 0.000000 0.428571 0.000000 0.000000 0.571429 0.142857 0.000000 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- CA[GT][AG][AT][GT][CA]CAGG[AT]A[AG]A[AG]G[CA]T[GC][GA]GC[TA]G -------------------------------------------------------------------------------- Time 381.26 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 21 sites = 5 llr = 106 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A ::2:28:::46:::2:::::8 pos.-specific C :2:2::::a2::8a::24a2: probability G a:2:82aa::4a2::a64::2 matrix T :868:::::4::::8:22:8: bits 2.2 * *** * * * * 2.0 * *** * * * * 1.8 * *** * * * * 1.5 * *** *** * * Relative 1.3 * ***** *** * * * Entropy 1.1 ** ****** ****** *** (30.6 bits) 0.9 ** ****** ****** *** 0.7 ** ****** *********** 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel GTTTGAGGCAAGCCTGGCCTA consensus CACAG TG G A CG CG sequence G C TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr7:97516597-97517551 156 5.53e-13 TGCTGCGGAC GTTTGAGGCAAGCCTGGCCTA CATCTAAGAT chr7:92271035-92271634 8 5.53e-13 ATGAAGA GTTTGAGGCTAGCCTGGGCTA GGTAGAAGAT chr7:100681486-100682407 510 6.40e-10 ATCTCTGGGA GTGCAAGGCCAGCCTGGTCTA CAGAGTGAGT chr7:101718758-101719307 209 7.51e-10 CTTGTCTATC GTTTGGGGCTGGGCTGTGCTG AGCGCTCGAC chr7:104084169-104084518 89 1.05e-09 GATATGGACT GCATGAGGCAGGCCAGCCCCA AAGCGATGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:97516597-97517551 5.5e-13 155_[+5]_778 chr7:92271035-92271634 5.5e-13 7_[+5]_571 chr7:100681486-100682407 6.4e-10 509_[+5]_391 chr7:101718758-101719307 7.5e-10 208_[+5]_320 chr7:104084169-104084518 1.1e-09 88_[+5]_240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=21 seqs=5 chr7:97516597-97517551 ( 156) GTTTGAGGCAAGCCTGGCCTA 1 chr7:92271035-92271634 ( 8) GTTTGAGGCTAGCCTGGGCTA 1 chr7:100681486-100682407 ( 510) GTGCAAGGCCAGCCTGGTCTA 1 chr7:101718758-101719307 ( 209) GTTTGGGGCTGGGCTGTGCTG 1 chr7:104084169-104084518 ( 89) GCATGAGGCAGGCCAGCCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 52032 bayes= 13.5966 E= 2.0e+004 -897 -897 220 -897 -897 -14 -897 147 -45 -897 -12 105 -897 -14 -897 147 -45 -897 187 -897 155 -897 -12 -897 -897 -897 220 -897 -897 -897 220 -897 -897 218 -897 -897 55 -14 -897 47 113 -897 87 -897 -897 -897 220 -897 -897 186 -12 -897 -897 218 -897 -897 -45 -897 -897 147 -897 -897 220 -897 -897 -14 146 -53 -897 86 87 -53 -897 218 -897 -897 -897 -14 -897 147 155 -897 -12 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 5 E= 2.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.200000 0.000000 0.200000 0.600000 0.000000 0.200000 0.000000 0.800000 0.200000 0.000000 0.800000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.200000 0.000000 0.400000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.600000 0.200000 0.000000 0.400000 0.400000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.800000 0.000000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- G[TC][TAG][TC][GA][AG]GGC[ATC][AG]G[CG]C[TA]G[GCT][CGT]C[TC][AG] -------------------------------------------------------------------------------- Time 473.82 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 25 sites = 5 llr = 119 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A ::46::2::2:::a2::::::26:2 pos.-specific C 282:a:22::4:::26::2a2:2:: probability G 8:::::6888::6:64:a4::8:a8 matrix T :244:a::2:6a4:::a:4:8:2:: bits 2.2 * * * * 2.0 * * * * * 1.8 ** * * ** * * 1.5 * ** * * * ** * * Relative 1.3 ** ** *** * * *** * * ** Entropy 1.1 ** ** *** *** *** *** ** (34.2 bits) 0.9 ** *** ******* *** *** ** 0.7 ** *************** *** ** 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel GCAACTGGGGTTGAGCTGGCTGAGG consensus CTTT ACTAC T AG T CAC A sequence C C C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:66197881-66198688 240 1.14e-12 TGCCCACTGG GCTTCTCCGGTTGAGCTGTCTGAGG CTCTGTTCTC chr7:105413005-105413554 313 2.77e-12 GTCGTGTGCT GTAACTGGGGCTGAAGTGTCTGAGG CAAAGCAATC chr6:38699011-38699301 226 3.08e-12 GTCTCCTGTG GCCACTGGGGTTTACCTGGCTGAGA TTGAGGGGCT chr7:101500159-101500708 140 1.54e-11 TGTATTGGTG GCAACTGGTGTTGAGCTGGCCACGG GAGGACATGC chr7:66468915-66469464 392 1.11e-10 TCAGCAGATG CCTTCTAGGACTTAGGTGCCTGTGG GAACATGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:66197881-66198688 1.1e-12 239_[+6]_543 chr7:105413005-105413554 2.8e-12 312_[+6]_212 chr6:38699011-38699301 3.1e-12 225_[+6]_40 chr7:101500159-101500708 1.5e-11 139_[+6]_385 chr7:66468915-66469464 1.1e-10 391_[+6]_133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=25 seqs=5 chr7:66197881-66198688 ( 240) GCTTCTCCGGTTGAGCTGTCTGAGG 1 chr7:105413005-105413554 ( 313) GTAACTGGGGCTGAAGTGTCTGAGG 1 chr6:38699011-38699301 ( 226) GCCACTGGGGTTTACCTGGCTGAGA 1 chr7:101500159-101500708 ( 140) GCAACTGGTGTTGAGCTGGCCACGG 1 chr7:66468915-66469464 ( 392) CCTTCTAGGACTTAGGTGCCTGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 51656 bayes= 13.5861 E= 1.3e+004 -897 -14 187 -897 -897 186 -897 -53 55 -14 -897 47 113 -897 -897 47 -897 218 -897 -897 -897 -897 -897 179 -45 -14 146 -897 -897 -14 187 -897 -897 -897 187 -53 -45 -897 187 -897 -897 86 -897 105 -897 -897 -897 179 -897 -897 146 47 187 -897 -897 -897 -45 -14 146 -897 -897 145 87 -897 -897 -897 -897 179 -897 -897 220 -897 -897 -14 87 47 -897 218 -897 -897 -897 -14 -897 147 -45 -897 187 -897 113 -14 -897 -53 -897 -897 220 -897 -45 -897 187 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 5 E= 1.3e+004 0.000000 0.200000 0.800000 0.000000 0.000000 0.800000 0.000000 0.200000 0.400000 0.200000 0.000000 0.400000 0.600000 0.000000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.200000 0.600000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.800000 0.200000 0.200000 0.000000 0.800000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 1.000000 0.000000 0.000000 0.000000 0.200000 0.200000 0.600000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.400000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.200000 0.000000 0.800000 0.000000 0.600000 0.200000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- [GC][CT][ATC][AT]CT[GAC][GC][GT][GA][TC]T[GT]A[GAC][CG]TG[GTC]C[TC][GA][ACT]G[GA] -------------------------------------------------------------------------------- Time 566.63 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 10 sites = 2 llr = 30 E-value = 8.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A ::::a::::: pos.-specific C :::::::::: probability G aaaa:aaaaa matrix T :::::::::: bits 2.2 **** ***** 2.0 ********** 1.8 ********** 1.5 ********** Relative 1.3 ********** Entropy 1.1 ********** (21.7 bits) 0.9 ********** 0.7 ********** 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel GGGGAGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chr7:66468915-66469464 220 3.04e-07 TGTGATGGCT GGGGAGGGGG GCAGTTAGAA chr7:68211440-68211989 124 3.04e-07 AAAGACTAGG GGGGAGGGGG TGGTCACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:66468915-66469464 3e-07 219_[+7]_320 chr7:68211440-68211989 3e-07 123_[+7]_416 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=10 seqs=2 chr7:66468915-66469464 ( 220) GGGGAGGGGG 1 chr7:68211440-68211989 ( 124) GGGGAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 53066 bayes= 14.6954 E= 8.2e+004 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 187 -765 -765 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 2 E= 8.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- GGGGAGGGGG -------------------------------------------------------------------------------- Time 659.20 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 25 sites = 4 llr = 101 E-value = 9.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A :5:::::::::::::::::3::::: pos.-specific C 3::33:33:33::::::::3::3:: probability G 8:a:8:8:8:5:a:a3a38:a:8:8 matrix T :5:8:a:8383a:a:8:835:a:a3 bits 2.2 * * * * * 2.0 * * * * * 1.8 * * **** * ** * 1.5 * * **** * ** * Relative 1.3 * * *** * **** * * ***** Entropy 1.1 * ******** ******** ***** (36.5 bits) 0.9 ********** ******** ***** 0.7 ******************* ***** 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel GAGTGTGTGTGTGTGTGTGTGTGTG consensus CT CC CCTCC G GTA C T sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:79146584-79147402 57 1.66e-15 GCACGAGCAT GTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTATC chr7:95671176-95672125 837 1.66e-15 GTGAGACTCT GTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTG chr7:105413005-105413554 286 2.38e-11 CTCAAGCTCT GAGCCTGTGCTTGTGGGGTCGTGTG CTGTAACTGG chr7:82971630-82972179 47 3.69e-11 TGAATAACTT CAGTGTCCTTCTGTGTGTGAGTCTT CATTCCCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:79146584-79147402 1.7e-15 56_[+8]_737 chr7:95671176-95672125 1.7e-15 836_[+8]_88 chr7:105413005-105413554 2.4e-11 285_[+8]_239 chr7:82971630-82972179 3.7e-11 46_[+8]_478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=25 seqs=4 chr7:79146584-79147402 ( 57) GTGTGTGTGTGTGTGTGTGTGTGTG 1 chr7:95671176-95672125 ( 837) GTGTGTGTGTGTGTGTGTGTGTGTG 1 chr7:105413005-105413554 ( 286) GAGCCTGTGCTTGTGGGGTCGTGTG 1 chr7:82971630-82972179 ( 47) CAGTGTCCTTCTGTGTGTGAGTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 51656 bayes= 14.3935 E= 9.1e+004 -865 18 178 -865 87 -865 -865 79 -865 -865 219 -865 -865 18 -865 137 -865 18 178 -865 -865 -865 -865 179 -865 18 178 -865 -865 18 -865 137 -865 -865 178 -21 -865 18 -865 137 -865 18 120 -21 -865 -865 -865 179 -865 -865 219 -865 -865 -865 -865 179 -865 -865 219 -865 -865 -865 20 137 -865 -865 219 -865 -865 -865 20 137 -865 -865 178 -21 -13 18 -865 79 -865 -865 219 -865 -865 -865 -865 179 -865 18 178 -865 -865 -865 -865 179 -865 -865 178 -21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 4 E= 9.1e+004 0.000000 0.250000 0.750000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.250000 0.250000 0.250000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- [GC][AT]G[TC][GC]T[GC][TC][GT][TC][GCT]TGTG[TG]G[TG][GT][TAC]GT[GC]T[GT] -------------------------------------------------------------------------------- Time 751.73 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 25 sites = 10 llr = 183 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A 9223a2a:28:22:15:7a5:724: pos.-specific C 1::2::::3:54:11:::::4:::1 probability G :774:8:a4251665171:56:759 matrix T :111::::1::3233432:::311: bits 2.2 * 2.0 * ** * 1.8 * ** * * 1.5 * * ** * * Relative 1.3 * **** * * * * Entropy 1.1 * **** ** * *** * (26.4 bits) 0.9 *** **** ** * * ***** * 0.7 *** **** ** ** ********* 0.4 *** **** ** ************* 0.2 ************************* 0.0 ------------------------- Multilevel AGGGAGAGGACCGGGAGAAAGAGGG consensus AAA A CGGTATTTTT GCTAA sequence C A AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:71945397-71946337 364 1.63e-12 AGCGGGGGAG AGGGAGAGAAGGGGGAGAAGGAGAG GGAGAGGAAG chr7:105708790-105709239 284 3.71e-11 GGCATCATAA AGGGAGAGGGGTGGTATAAAGAGAG GCCTATTGAG chr7:73056302-73056901 103 4.25e-10 ATTTCCTCCT AGTGAAAGGACCGGGTGGAGGAGAG CTAATGCTAC chr7:65300367-65300916 132 1.63e-09 ACTGTTTTTA AGGCAGAGTACCTCTAGAAAGTGGG TTACAATACC chr7:79146584-79147402 538 1.95e-09 CGGAGAAGAC AGAAAGAGGGGTGGGGTAAGCTGGG GCTGAGATCA chr7:108796541-108797740 43 4.83e-09 ATAGATACAT AGATAGAGCACCAGCTGTAACAGGG GGAAGGCTTG chr7:92391770-92392570 156 5.64e-09 CCTATAACTA AAGAAGAGAAGTATTTGTAGGAGAG GATGCCAAGC chr7:66763679-66764228 271 6.08e-09 GTCCCAAAAC ATGAAGAGGAGCGTGTTAAGCTTGG CTTTCTCATC chr7:100188089-100188638 462 1.62e-08 TGAGCTACTG CAGGAGAGCACAGTGAGAAACAAGC TCACCGGGAT chr7:70144673-70145243 196 2.09e-08 CTAGTATGAG AGGCAAAGCACATGAAGAAAGAATG GATGCCAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:71945397-71946337 1.6e-12 363_[+9]_552 chr7:105708790-105709239 3.7e-11 283_[+9]_141 chr7:73056302-73056901 4.2e-10 102_[+9]_472 chr7:65300367-65300916 1.6e-09 131_[+9]_393 chr7:79146584-79147402 1.9e-09 537_[+9]_256 chr7:108796541-108797740 4.8e-09 42_[+9]_1132 chr7:92391770-92392570 5.6e-09 155_[+9]_620 chr7:66763679-66764228 6.1e-09 270_[+9]_254 chr7:100188089-100188638 1.6e-08 461_[+9]_63 chr7:70144673-70145243 2.1e-08 195_[+9]_350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=25 seqs=10 chr7:71945397-71946337 ( 364) AGGGAGAGAAGGGGGAGAAGGAGAG 1 chr7:105708790-105709239 ( 284) AGGGAGAGGGGTGGTATAAAGAGAG 1 chr7:73056302-73056901 ( 103) AGTGAAAGGACCGGGTGGAGGAGAG 1 chr7:65300367-65300916 ( 132) AGGCAGAGTACCTCTAGAAAGTGGG 1 chr7:79146584-79147402 ( 538) AGAAAGAGGGGTGGGGTAAGCTGGG 1 chr7:108796541-108797740 ( 43) AGATAGAGCACCAGCTGTAACAGGG 1 chr7:92391770-92392570 ( 156) AAGAAGAGAAGTATTTGTAGGAGAG 1 chr7:66763679-66764228 ( 271) ATGAAGAGGAGCGTGTTAAGCTTGG 1 chr7:100188089-100188638 ( 462) CAGGAGAGCACAGTGAGAAACAAGC 1 chr7:70144673-70145243 ( 196) AGGCAAAGCACATGAAGAAAGAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 51656 bayes= 13.278 E= 2.6e+003 172 -113 -997 -997 -45 -997 168 -153 -45 -997 168 -153 14 -14 87 -153 187 -997 -997 -997 -45 -997 187 -997 187 -997 -997 -997 -997 -997 220 -997 -45 45 87 -153 155 -997 -12 -997 -997 118 120 -997 -45 86 -112 5 -45 -997 146 -53 -997 -113 146 5 -145 -113 120 5 87 -997 -112 47 -997 -997 168 5 136 -997 -112 -53 187 -997 -997 -997 87 -997 120 -997 -997 86 146 -997 136 -997 -997 5 -45 -997 168 -153 55 -997 120 -153 -997 -113 204 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 10 E= 2.6e+003 0.900000 0.100000 0.000000 0.000000 0.200000 0.000000 0.700000 0.100000 0.200000 0.000000 0.700000 0.100000 0.300000 0.200000 0.400000 0.100000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.300000 0.400000 0.100000 0.800000 0.000000 0.200000 0.000000 0.000000 0.500000 0.500000 0.000000 0.200000 0.400000 0.100000 0.300000 0.200000 0.000000 0.600000 0.200000 0.000000 0.100000 0.600000 0.300000 0.100000 0.100000 0.500000 0.300000 0.500000 0.000000 0.100000 0.400000 0.000000 0.000000 0.700000 0.300000 0.700000 0.000000 0.100000 0.200000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.400000 0.600000 0.000000 0.700000 0.000000 0.000000 0.300000 0.200000 0.000000 0.700000 0.100000 0.400000 0.000000 0.500000 0.100000 0.000000 0.100000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- A[GA][GA][GAC]A[GA]AG[GCA][AG][CG][CTA][GAT][GT][GT][AT][GT][AT]A[AG][GC][AT][GA][GA]G -------------------------------------------------------------------------------- Time 844.76 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 24 sites = 4 llr = 101 E-value = 8.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A a88:3:a:a5a5:3::a3::3::a pos.-specific C :::a5a::::::58:3:5aa:::: probability G :33::::a::::::38:::::a8: matrix T ::::3::::5:55:8::3::8:3: bits 2.2 * * * ** * 2.0 * * **** * * ** * * 1.8 * * **** * * ** * * 1.5 * * **** * * ** * * Relative 1.3 * * **** * * ** ** *** Entropy 1.1 **** **** * **** ****** (36.4 bits) 0.9 **** ************ ****** 0.7 **** ************ ****** 0.4 ************************ 0.2 ************************ 0.0 ------------------------ Multilevel AAACCCAGAAAACCTGACCCTGGA consensus GG A T TTAGC A A T sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr7:95671176-95672125 723 1.43e-12 GGCTTCAGGA AAACACAGATATTCTCACCCTGGA AGAGAATGTG chr6:38666599-38666977 45 1.71e-12 ATGCATTTAG AAACCCAGATAATCTGAACCTGTA AACCCTGATT chr7:125090817-125092066 47 3.04e-12 GTCCTTGGGG AAACCCAGAAATCAGGACCCAGGA TGCACTGCCC chr7:83063963-83064847 296 5.56e-12 GTGAGGATCA AGGCTCAGAAAACCTGATCCTGGA TCTCTGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:95671176-95672125 1.4e-12 722_[+10]_203 chr6:38666599-38666977 1.7e-12 44_[+10]_310 chr7:125090817-125092066 3e-12 46_[+10]_1179 chr7:83063963-83064847 5.6e-12 295_[+10]_565 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=24 seqs=4 chr7:95671176-95672125 ( 723) AAACACAGATATTCTCACCCTGGA 1 chr6:38666599-38666977 ( 45) AAACCCAGATAATCTGAACCTGTA 1 chr7:125090817-125092066 ( 47) AAACCCAGAAATCAGGACCCAGGA 1 chr7:83063963-83064847 ( 296) AGGCTCAGAAAACCTGATCCTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 51750 bayes= 13.6592 E= 8.9e+004 187 -865 -865 -865 146 -865 20 -865 146 -865 20 -865 -865 218 -865 -865 -13 118 -865 -21 -865 218 -865 -865 187 -865 -865 -865 -865 -865 219 -865 187 -865 -865 -865 87 -865 -865 79 187 -865 -865 -865 87 -865 -865 79 -865 118 -865 79 -13 177 -865 -865 -865 -865 20 137 -865 18 178 -865 187 -865 -865 -865 -13 118 -865 -21 -865 218 -865 -865 -865 218 -865 -865 -13 -865 -865 137 -865 -865 219 -865 -865 -865 178 -21 187 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 4 E= 8.9e+004 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.500000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.500000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- A[AG][AG]C[CAT]CAGA[AT]A[AT][CT][CA][TG][GC]A[CAT]CC[TA]G[GT]A -------------------------------------------------------------------------------- Time 938.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:27364525-27364764 8.20e-05 51_[+1(5.94e-05)]_3_[+2(9.04e-08)]_144 chr2:27152224-27152414 2.74e-04 32_[+1(4.79e-05)]_16_[+2(1.00e-06)]_101 chr6:38699011-38699301 1.44e-06 225_[+6(3.08e-12)]_40 chr6:88322313-88322595 5.20e-02 186_[+1(6.61e-05)]_76 chr6:38765236-38765385 5.59e-04 50_[+5(1.20e-05)]_78 chr6:38856153-38856302 2.14e-01 149 chr6:88203909-88204133 7.67e-01 224 chr6:38642265-38642444 5.53e-07 39_[+1(4.61e-06)]_28_[+4(8.93e-10)]_67 chr6:38666599-38666977 6.64e-07 44_[+10(1.71e-12)]_130_[+8(9.06e-05)]_19_[+1(1.00e-04)]_116 chr6:38832190-38832724 9.44e-02 148_[+9(9.25e-05)]_208_[+8(4.32e-05)]_46_[+1(5.34e-05)]_62 chr6:38757479-38757763 1.90e-02 50_[+4(2.30e-05)]_209 chr7:70311472-70312021 1.97e-01 1_[+1(4.01e-06)]_528 chr7:111460560-111461109 8.87e-04 423_[+2(1.11e-06)]_47_[+3(4.52e-07)]_47 chr7:95671176-95672125 3.64e-15 410_[+1(1.16e-05)]_292_[+10(1.43e-12)]_90_[+8(1.66e-15)]_1_[+8(6.76e-06)]_62 chr7:63720196-63720745 2.13e-01 130_[+2(5.18e-06)]_167_[+8(4.97e-05)]_206 chr7:69362498-69363047 2.24e-02 141_[+2(5.66e-06)]_387 chr7:100188089-100188638 3.15e-05 198_[+1(1.91e-05)]_179_[+7(1.09e-05)]_54_[+9(1.62e-08)]_63 chr7:70413249-70413798 1.23e-03 20_[+1(7.42e-08)]_2_[+9(3.06e-05)]_482 chr7:104084169-104084518 1.57e-10 40_[+1(3.91e-07)]_28_[+5(1.05e-09)]_157_[+4(6.60e-10)]_58 chr7:107696305-107696854 2.35e-01 549 chr7:123713721-123714270 6.97e-02 102_[+6(1.10e-05)]_351_[+8(2.92e-05)]_46 chr7:101718758-101719307 1.28e-11 208_[+5(7.51e-10)]_19_[+1(2.42e-05)]_173_[+4(3.27e-12)]_19_[+10(4.27e-05)]_40 chr7:127921931-127922530 1.95e-04 8_[+1(1.07e-08)]_394_[+10(7.71e-05)]_54_[+6(8.08e-05)]_74 chr7:81826094-81826693 1.53e-06 114_[+2(6.75e-06)]_74_[+6(8.08e-05)]_11_[+3(7.25e-08)]_88_[+1(4.61e-06)]_9_[+9(2.20e-05)]_201 chr7:107074995-107075594 8.11e-02 85_[+1(5.49e-07)]_494 chr7:71502866-71503415 4.66e-02 50_[+3(8.48e-05)]_174_[+8(7.59e-05)]_231_[+2(9.49e-05)]_37 chr7:101500159-101500708 2.19e-07 139_[+6(1.54e-11)]_84_[+1(1.16e-05)]_281 chr7:108796541-108797740 1.42e-04 42_[+9(4.83e-09)]_481_[+2(2.14e-05)]_205_[+1(3.43e-05)]_405 chr7:107560514-107561063 3.61e-03 128_[+5(9.28e-05)]_248_[+1(3.06e-05)]_132 chr7:67973719-67974268 3.98e-04 333_[+1(7.90e-06)]_39_[+3(1.31e-07)]_146 chr7:66578070-66578669 1.68e-04 117_[+10(4.33e-05)]_33_[+1(7.63e-07)]_45_[+2(7.31e-07)]_339 chr7:90158171-90158971 1.06e-01 178_[+9(2.82e-05)]_409_[+1(3.06e-05)]_168 chr7:92391770-92392570 9.27e-05 53_[+4(1.12e-06)]_77_[+9(5.64e-09)]_620 chr7:71036918-71037467 5.20e-01 549 chr7:83097025-83097574 2.81e-02 97_[+1(7.90e-06)]_212_[+2(2.14e-05)]_199 chr7:66763679-66764228 6.34e-05 270_[+9(6.08e-09)]_56_[+1(1.32e-05)]_178 chr7:66157214-66157813 6.04e-08 184_[+1(1.91e-05)]_70_[+4(1.08e-11)]_41_[+2(1.69e-05)]_238 chr7:115626693-115627692 2.01e-02 148_[+5(1.30e-05)]_21_[+1(1.02e-05)]_789 chr7:82971630-82972179 1.82e-05 46_[+8(3.69e-11)]_478 chr7:63499316-63500135 1.31e-03 168_[+8(6.47e-05)]_122_[+2(6.57e-07)]_350_[+10(5.34e-05)]_109 chr7:71389204-71389753 8.50e-02 104_[+2(1.00e-06)]_424 chr7:105547945-105548594 7.46e-05 463_[+2(3.95e-09)]_165 chr7:104118784-104119383 3.98e-03 203_[+2(3.15e-08)]_163_[+1(2.15e-05)]_192 chr7:115098190-115098739 9.46e-04 18_[+1(3.91e-07)]_198_[+2(2.50e-05)]_180_[+1(1.00e-04)]_92 chr7:66280165-66280714 2.61e-03 45_[+6(6.59e-05)]_58_[+7(3.70e-05)]_39_[+5(3.04e-05)]_181_[+1(1.00e-04)]_150 chr7:83063963-83064847 2.99e-08 295_[+10(5.56e-12)]_160_[+2(7.80e-05)]_75_[+2(1.00e-06)]_72_[+2(1.84e-06)]_36_[+2(3.01e-07)]_76_[+1(1.91e-05)]_42 chr7:65300367-65300916 1.56e-08 131_[+9(1.63e-09)]_335_[+3(7.25e-08)]_47 chr7:106294602-106295451 1.77e-01 670_[+2(1.00e-06)]_26_[+1(7.34e-05)]_112 chr7:100578576-100579125 9.62e-04 33_[+1(3.06e-05)]_290_[+3(7.25e-08)]_195 chr7:70093382-70093831 6.14e-03 231_[+1(2.42e-05)]_198 chr7:66197881-66198688 8.32e-10 85_[+1(1.91e-05)]_11_[+2(5.18e-06)]_60_[+2(1.03e-07)]_21_[+6(1.14e-12)]_65_[+3(8.48e-05)]_467 chr7:110877085-110877684 1.97e-05 12_[+4(2.57e-10)]_43_[+2(9.52e-06)]_498 chr7:123986234-123986783 3.20e-01 236_[+1(4.29e-05)]_182_[+5(4.94e-05)]_90 chr7:73448326-73449091 1.64e-01 222_[+1(2.15e-05)]_327_[+1(6.61e-05)]_176 chr7:92271035-92271634 1.23e-08 7_[+5(5.53e-13)]_42_[+9(6.31e-05)]_157_[+2(7.37e-06)]_45_[+2(5.95e-05)]_260 chr7:92399295-92399894 2.17e-01 208_[+2(3.59e-06)]_370 chr7:103970880-103971429 7.83e-03 89_[+6(8.08e-05)]_185_[+6(8.27e-05)]_34_[+2(1.98e-05)]_4_[+1(6.92e-06)]_35_[+1(3.83e-05)]_63_[+9(7.39e-05)]_3 chr7:73056302-73056901 3.88e-07 9_[+1(1.02e-05)]_73_[+9(4.25e-10)]_166_[+7(1.09e-05)]_60_[+1(8.15e-05)]_51_[+4(3.19e-05)]_140 chr7:81231583-81232132 5.05e-02 390_[+1(4.29e-05)]_139 chr7:108330771-108331370 5.18e-01 120_[+1(2.72e-05)]_459 chr7:76990537-76991363 2.62e-02 59_[+8(9.55e-05)]_87_[+8(3.30e-05)]_9_[+2(3.94e-06)]_600 chr7:105413005-105413554 3.66e-12 5_[+7(3.70e-05)]_270_[+8(2.38e-11)]_2_[+6(2.77e-12)]_212 chr7:97516597-97517551 2.11e-08 18_[+1(1.02e-05)]_117_[+5(5.53e-13)]_90_[+4(3.43e-05)]_41_[+4(1.31e-05)]_597 chr7:67296236-67296942 3.02e-01 92_[+1(9.03e-05)]_594 chr7:112880175-112880824 1.13e-01 101_[+5(8.28e-05)]_109_[+1(8.15e-05)]_398 chr7:124855920-124856569 4.91e-02 64_[+8(9.06e-05)]_402_[+2(2.24e-06)]_137 chr7:69829229-69829778 1.48e-04 27_[+3(8.92e-06)]_129_[+2(8.33e-05)]_19_[+1(4.29e-05)]_143_[+5(1.49e-05)]_158 chr7:68211440-68211989 9.15e-14 123_[+7(3.04e-07)]_34_[+4(1.23e-14)]_141_[+3(8.48e-05)]_15_[+7(1.09e-05)]_180 chr7:69959582-69960631 1.51e-02 86_[+3(7.73e-07)]_276_[+3(2.57e-05)]_522_[+2(2.46e-06)]_122 chr7:69707316-69707865 4.73e-02 63_[+1(1.23e-06)]_466 chr7:69891296-69891995 4.42e-02 303_[+2(2.03e-06)]_272_[+9(5.08e-05)]_78 chr7:70514420-70514969 2.12e-06 121_[+1(3.06e-05)]_318_[+2(1.16e-08)]_69 chr7:63590798-63591247 1.03e-05 271_[+2(2.71e-06)]_132_[+4(1.81e-09)] chr7:108272128-108272677 3.59e-02 335_[+2(2.39e-07)]_4_[+1(6.61e-05)]_169 chr7:114361954-114362553 5.01e-01 272_[+2(2.69e-05)]_306 chr7:105708790-105709239 3.17e-08 258_[+1(6.61e-05)]_5_[+9(3.71e-11)]_34_[+2(1.00e-06)]_86 chr7:79146584-79147402 4.83e-23 31_[+3(1.59e-05)]_14_[+8(1.66e-15)]_20_[+2(6.57e-07)]_12_[+8(2.66e-10)]_5_[+8(1.67e-07)]_[+2(6.37e-05)]_2_[+2(2.39e-08)]_4_[+3(1.31e-07)]_171_[+1(7.90e-06)]_98_[+9(1.95e-09)]_132_[+10(4.18e-05)]_100 chr7:71945397-71946337 1.75e-11 335_[+1(7.42e-08)]_8_[+9(1.63e-12)]_16_[+1(4.96e-08)]_6_[+1(2.76e-07)]_136_[+1(6.48e-07)]_168_[+2(1.22e-05)]_145 chr7:70144673-70145243 1.05e-03 195_[+9(2.09e-08)]_104_[+1(9.03e-05)]_226 chr7:100681486-100682407 1.60e-10 199_[+1(2.15e-05)]_147_[+3(9.67e-07)]_132_[+5(6.40e-10)]_18_[+1(8.50e-09)]_186_[+2(1.11e-06)]_146 chr7:109488686-109489235 1.17e-01 102_[+1(1.69e-05)]_427 chr7:125090817-125092066 1.10e-12 46_[+10(3.04e-12)]_138_[+2(2.65e-10)]_8_[+2(3.37e-05)]_73_[+6(3.80e-05)]_592_[+4(3.77e-05)]_276 chr7:91474804-91475403 1.71e-01 554_[+8(1.06e-05)]_20 chr7:66468915-66469464 1.07e-11 219_[+7(3.04e-07)]_23_[+2(8.75e-06)]_41_[+6(8.67e-05)]_52_[+6(1.11e-10)]_22_[+1(2.76e-07)]_91 chr7:127847549-127848498 2.72e-01 [+7(1.09e-05)]_43_[+7(1.09e-05)]_30_[+7(1.09e-05)]_43_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_26_[+7(1.09e-05)]_39_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_26_[+7(1.09e-05)]_39_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_30_[+7(1.09e-05)]_26_[+7(1.09e-05)]_107 chr7:92264468-92265017 4.00e-02 218_[+1(2.76e-07)]_311 chr7:66749727-66750276 6.22e-01 549 chr8:122233392-122233542 1.25e-02 19_[+1(3.83e-05)]_111 chr8:122375539-122375755 1.74e-04 97_[+2(3.94e-06)]_30_[+3(1.31e-07)]_57 chr8:122108965-122109228 6.26e-02 89_[+1(3.48e-06)]_154 chr8:122246044-122246311 2.69e-04 60_[+10(4.04e-06)]_144_[+1(3.83e-05)]_19 chrX:7948807-7949230 5.02e-05 15_[+2(8.13e-07)]_19_[+1(2.72e-05)]_121_[+10(9.94e-05)]_203 chrX:150565848-150566190 7.76e-01 342 chrX:150846672-150846828 3.68e-01 27_[+8(3.05e-05)]_104 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************