is.broadpeak FALSE 
[1] "Fix 1 stops\n"
read H3K27ac_mH2A1i_MT_Rep1-GSM1972405.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 H3K27ac_mH2A1i_MT_Rep2-GSM1972406.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-H3K27ac_mH2A1i_MT.MACS-2.1.0.p1e-1.narrowPeak-uri.sav 
EM is done

EM is saved at: IDR-H3K27ac_mH2A1i_MT.MACS-2.1.0.p1e-1.narrowPeak-em.sav 
EM estimation for the following files
H3K27ac_mH2A1i_MT_Rep1-GSM1972405.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
H3K27ac_mH2A1i_MT_Rep2-GSM1972406.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.6065876

$rho1
[1] 0.6767851

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-H3K27ac_mH2A1i_MT.MACS-2.1.0.p1e-1.narrowPeak-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 21796.77

$x.mean2
[1] 25649.88

$y.mean1
[1] 23729.36

$y.mean2
[1] 22672.94

$x.sd1
[1] 14556.67

$x.sd2
[1] 11167.05

$y.sd1
[1] 14307.01

$y.sd2
[1] 12005.36