is.broadpeak TRUE 
read H3K27ac_mH2A1i_MB_Rep1-GSM1972403.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak :  74554 peaks
 74554 peaks are left after cleaning
 H3K27ac_mH2A1i_MB_Rep2-GSM1972404.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak :  51888 peaks
 51888  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-H3K27ac_mH2A1i_MB.MACS-2.1.0.p1e-2.broad_peaks-uri.sav 
EM is done

EM is saved at: IDR-H3K27ac_mH2A1i_MB.MACS-2.1.0.p1e-2.broad_peaks-em.sav 
EM estimation for the following files
H3K27ac_mH2A1i_MB_Rep1-GSM1972403.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak
H3K27ac_mH2A1i_MB_Rep2-GSM1972404.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak
$p
[1] 0.4553397

$rho1
[1] 0.1103558

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-H3K27ac_mH2A1i_MB.MACS-2.1.0.p1e-2.broad_peaks-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 16468.84

$x.mean2
[1] 16144.08

$y.mean1
[1] 16332.08

$y.mean2
[1] 16258.47

$x.sd1
[1] 9903.558

$x.sd2
[1] 8963.764

$y.sd1
[1] 10098.58

$y.sd2
[1] 8782.467