is.broadpeak FALSE 
read H3K27ac_MT_Rep1-GSM1972401.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 H3K27ac_MT_Rep2-GSM1972402.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  91679 peaks
 91679  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-H3K27ac_MT.MACS-2.1.0.p1e-1_peaks.narrowPeak-uri.sav 
EM is done

EM is saved at: IDR-H3K27ac_MT.MACS-2.1.0.p1e-1_peaks.narrowPeak-em.sav 
EM estimation for the following files
H3K27ac_MT_Rep1-GSM1972401.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
H3K27ac_MT_Rep2-GSM1972402.mm10.36mers.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.6256613

$rho1
[1] 0.7776711

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-H3K27ac_MT.MACS-2.1.0.p1e-1_peaks.narrowPeak-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 20204.16

$x.mean2
[1] 32898.97

$y.mean1
[1] 22129.55

$y.mean2
[1] 29684.37

$x.sd1
[1] 14269.5

$x.sd2
[1] 10650.83

$y.sd1
[1] 14949.21

$y.sd2
[1] 12057.22