is.broadpeak TRUE 
read H3K27ac_MB_Rep1-GSM1972399.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak :  78284 peaks
 78284 peaks are left after cleaning
 H3K27ac_MB_Rep2-GSM1972400.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak :  47580 peaks
 47580  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-H3K27ac_MB.MACS-2.1.0.p1e-2.broad_peaks-uri.sav 
EM is done

EM is saved at: IDR-H3K27ac_MB.MACS-2.1.0.p1e-2.broad_peaks-em.sav 
EM estimation for the following files
H3K27ac_MB_Rep1-GSM1972399.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak
H3K27ac_MB_Rep2-GSM1972400.mm10.36mers.MACS-2.1.0.p1e-2.broad_peaks.broadPeak
$p
[1] 0.4856039

$rho1
[1] 0.06892815

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-H3K27ac_MB.MACS-2.1.0.p1e-2.broad_peaks-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 13210.58

$x.mean2
[1] 13612.9

$y.mean1
[1] 13723.32

$y.mean2
[1] 13128.76

$x.sd1
[1] 8399.68

$x.sd2
[1] 7067.045

$y.sd1
[1] 8390.322

$y.sd2
[1] 7070.956