is.broadpeak TRUE 
read H3K27ac_MB_Rep1-GSM1972399.mm10.36mers.MACS-2.1.0.p1e-1.broad_peaks.broadPeak.top100K-p-value-sort :  78287 peaks
 78287 peaks are left after cleaning
 H3K27ac_MB_Rep2-GSM1972400.mm10.36mers.MACS-2.1.0.p1e-1.broad_peaks.broadPeak.top100K-p-value-sort :  47586 peaks
 47586  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-H3K27ac_MB.MACS-2.1.0.p1e-1.broad_peaks-uri.sav 
EM is done

EM is saved at: IDR-H3K27ac_MB.MACS-2.1.0.p1e-1.broad_peaks-em.sav 
EM estimation for the following files
H3K27ac_MB_Rep1-GSM1972399.mm10.36mers.MACS-2.1.0.p1e-1.broad_peaks.broadPeak.top100K-p-value-sort
H3K27ac_MB_Rep2-GSM1972400.mm10.36mers.MACS-2.1.0.p1e-1.broad_peaks.broadPeak.top100K-p-value-sort
$p
[1] 0.4853467

$rho1
[1] 0.06886322

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-H3K27ac_MB.MACS-2.1.0.p1e-1.broad_peaks-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 13222.8

$x.mean2
[1] 13603.12

$y.mean1
[1] 13744.49

$y.mean2
[1] 13111.03

$x.sd1
[1] 8422.583

$x.sd2
[1] 7043.796

$y.sd1
[1] 8405.247

$y.sd2
[1] 7054.478