is.broadpeak FALSE 
read A549-100nM-Dex-2h-H3K27ac-ENCFF019ZWS.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 A549-100nM-Dex-2h-H3K27ac-ENCFF416COP.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-A549-100nM-Dex-2h-H3K27ac-ENCFF019ZWS-vs-ENCFF416COP-uri.sav 
EM is done

EM is saved at: IDR-A549-100nM-Dex-2h-H3K27ac-ENCFF019ZWS-vs-ENCFF416COP-em.sav 
EM estimation for the following files
A549-100nM-Dex-2h-H3K27ac-ENCFF019ZWS.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
A549-100nM-Dex-2h-H3K27ac-ENCFF416COP.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.6803611

$rho1
[1] 0.7952647

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-A549-100nM-Dex-2h-H3K27ac-ENCFF019ZWS-vs-ENCFF416COP-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 20205.69

$x.mean2
[1] 40553.55

$y.mean1
[1] 19919.68

$y.mean2
[1] 41161.38

$x.sd1
[1] 13271.65

$x.sd2
[1] 9351.072

$y.sd1
[1] 13062.76

$y.sd2
[1] 8593.81