******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= GATA_No_Function.radius25bp.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:78066078-78066128 1.0000 50 chr11:121433515-12143356 1.0000 50 chr11:96918280-96918330 1.0000 50 chr11:96941206-96941256 1.0000 50 chr16:17638395-17638445 1.0000 50 chr17:4626384-4626434 1.0000 50 chr18:78123212-78123262 1.0000 50 chr1:133825637-133825687 1.0000 50 chr1:155039378-155039428 1.0000 50 chr2:35336422-35336472 1.0000 50 chr2:27393912-27393962 1.0000 50 chr3:21996079-21996129 1.0000 50 chr5:147442107-147442157 1.0000 50 chr6:38850175-38850225 1.0000 50 chr6:88190792-88190842 1.0000 50 chr6:38874545-38874595 1.0000 50 chr7:81371653-81371703 1.0000 50 chr7:126348348-126348398 1.0000 50 chr7:66079564-66079614 1.0000 50 chr7:81828601-81828651 1.0000 50 chr7:83695979-83696029 1.0000 50 chr7:80629549-80629599 1.0000 50 chr7:100684841-100684891 1.0000 50 chr7:83898483-83898533 1.0000 50 chr7:103910226-103910276 1.0000 50 chr7:65300616-65300666 1.0000 50 chr7:128672443-128672493 1.0000 50 chr7:126396996-126397046 1.0000 50 chr7:90129415-90129465 1.0000 50 chr7:126126718-126126768 1.0000 50 chr7:103827971-103828021 1.0000 50 chr8:122306953-122307003 1.0000 50 chr8:122329138-122329188 1.0000 50 chr8:122309363-122309413 1.0000 50 chr9:110668775-110668825 1.0000 50 chr9:96241584-96241634 1.0000 50 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme GATA_No_Function.radius25bp.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o GATA_No_Function.radius25bp.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 36 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 1800 N= 36 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.246 C 0.264 G 0.237 T 0.254 Background letter frequencies (from dataset with add-one prior applied): A 0.246 C 0.264 G 0.237 T 0.254 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 14 sites = 10 llr = 102 E-value = 3.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 2::235:613a:79 pos.-specific C ::524:1:32::31 probability G 8a561:9132:8:: matrix T ::::25:333:2:: bits 2.1 * * 1.9 * * 1.7 * * * 1.5 * * * * Relative 1.2 ** * ** * Entropy 1.0 *** ** **** (14.7 bits) 0.8 *** ** **** 0.6 **** *** **** 0.4 **** *** **** 0.2 ******** **** 0.0 -------------- Multilevel GGCGCAGACAAGAA consensus A GAAT TGT TC sequence CT TC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- chr2:35336422-35336472 7 5.97e-07 GGCGCT GGGGCAGAAAAGAA ACAAGAATGA chr9:96241584-96241634 35 2.94e-06 TTGATAACTG AGGGCTGTGTAGAA AT chr1:155039378-155039428 34 5.04e-06 GCCTGCCAAT GGGGCAGACTATCA GAG chr6:88190792-88190842 4 6.82e-06 GAA GGCAGAGATAAGAA ACACCATTTA chr7:128672443-128672493 21 8.21e-06 TCTAGAGGCG GGCGCTGAGCAGAC ACCTCCTGGC chr1:133825637-133825687 25 8.21e-06 GCTGACCTCA GGCCTAGTCTAGAA TGCAAGGAAC chr7:126126718-126126768 30 1.47e-05 TTACCAAGGA AGCATTGATAAGAA GTTCAGC chr11:121433515-12143356 17 1.59e-05 CAAGGACCCT GGGGATGGCCAGCA CTGACAGGCT chr8:122329138-122329188 18 1.99e-05 CTCTTTGTTG GGGGAACAGGAGCA GGCTCAGATC chr7:100684841-100684891 30 2.60e-05 TCAATGCTTT GGCCATGTTGATAA CAAGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:35336422-35336472 6e-07 6_[+1]_30 chr9:96241584-96241634 2.9e-06 34_[+1]_2 chr1:155039378-155039428 5e-06 33_[+1]_3 chr6:88190792-88190842 6.8e-06 3_[+1]_33 chr7:128672443-128672493 8.2e-06 20_[+1]_16 chr1:133825637-133825687 8.2e-06 24_[+1]_12 chr7:126126718-126126768 1.5e-05 29_[+1]_7 chr11:121433515-12143356 1.6e-05 16_[+1]_20 chr8:122329138-122329188 2e-05 17_[+1]_19 chr7:100684841-100684891 2.6e-05 29_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=14 seqs=10 chr2:35336422-35336472 ( 7) GGGGCAGAAAAGAA 1 chr9:96241584-96241634 ( 35) AGGGCTGTGTAGAA 1 chr1:155039378-155039428 ( 34) GGGGCAGACTATCA 1 chr6:88190792-88190842 ( 4) GGCAGAGATAAGAA 1 chr7:128672443-128672493 ( 21) GGCGCTGAGCAGAC 1 chr1:133825637-133825687 ( 25) GGCCTAGTCTAGAA 1 chr7:126126718-126126768 ( 30) AGCATTGATAAGAA 1 chr11:121433515-12143356 ( 17) GGGGATGGCCAGCA 1 chr8:122329138-122329188 ( 18) GGGGAACAGGAGCA 1 chr7:100684841-100684891 ( 30) GGCCATGTTGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 1332 bayes= 7.99522 E= 3.2e+000 -30 -997 176 -997 -997 -997 208 -997 -997 92 108 -997 -30 -40 134 -997 29 60 -124 -34 103 -997 -997 98 -997 -140 193 -997 129 -997 -124 24 -129 19 34 24 29 -40 -24 24 202 -997 -997 -997 -997 -997 176 -34 151 19 -997 -997 187 -140 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 10 E= 3.2e+000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.200000 0.200000 0.600000 0.000000 0.300000 0.400000 0.100000 0.200000 0.500000 0.000000 0.000000 0.500000 0.000000 0.100000 0.900000 0.000000 0.600000 0.000000 0.100000 0.300000 0.100000 0.300000 0.300000 0.300000 0.300000 0.200000 0.200000 0.300000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.700000 0.300000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GA]G[CG][GAC][CAT][AT]G[AT][CGT][ATCGC]A[GT][AC]A -------------------------------------------------------------------------------- Time 0.81 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 18 sites = 6 llr = 89 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::2::7a2:8::3:538 pos.-specific C ::57:72::a:232a552 probability G :23::2:::::3::::2: matrix T a822a22:8:2575:::: bits 2.1 * * * 1.9 * * * * * 1.7 * * * * * 1.5 * * * ** * * Relative 1.2 ** * **** * * Entropy 1.0 ** * **** * ** * (21.5 bits) 0.8 ** * ***** * ** * 0.6 ****************** 0.4 ****************** 0.2 ****************** 0.0 ------------------ Multilevel TTCCTCAATCATTTCACA consensus G GCA CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------ chr7:80629549-80629599 21 1.16e-09 ATCCCGGCCA TTTCTCAATCATTTCAAA ACACACTCTC chr11:96918280-96918330 2 5.69e-08 C TTCTTCAATCACTCCCCA ACGCAACACA chr7:81371653-81371703 14 9.51e-08 TAAAAGTGTT TTGCTTCATCATCTCCAA GACAGGCCTG chr11:96941206-96941256 22 1.11e-07 GGGCTCTTTG TGGCTCAATCAGTACCCC CCTTAAGGGA chr7:65300616-65300666 15 1.30e-07 CATTCTCGGC TTCCTCAAACTGTTCAGA AATATGCTTC chr3:21996079-21996129 26 2.14e-07 AAGAAAACAT TTCATGTATCATCACACA TCTAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:80629549-80629599 1.2e-09 20_[+2]_12 chr11:96918280-96918330 5.7e-08 1_[+2]_31 chr7:81371653-81371703 9.5e-08 13_[+2]_19 chr11:96941206-96941256 1.1e-07 21_[+2]_11 chr7:65300616-65300666 1.3e-07 14_[+2]_18 chr3:21996079-21996129 2.1e-07 25_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=18 seqs=6 chr7:80629549-80629599 ( 21) TTTCTCAATCATTTCAAA 1 chr11:96918280-96918330 ( 2) TTCTTCAATCACTCCCCA 1 chr7:81371653-81371703 ( 14) TTGCTTCATCATCTCCAA 1 chr11:96941206-96941256 ( 22) TGGCTCAATCAGTACCCC 1 chr7:65300616-65300666 ( 15) TTCCTCAAACTGTTCAGA 1 chr3:21996079-21996129 ( 26) TTCATGTATCATCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 1188 bayes= 7.27906 E= 1.5e+002 -923 -923 -923 198 -923 -923 -51 171 -923 92 49 -61 -56 134 -923 -61 -923 -923 -923 198 -923 134 -51 -61 144 -66 -923 -61 202 -923 -923 -923 -56 -923 -923 171 -923 192 -923 -923 176 -923 -923 -61 -923 -66 49 98 -923 34 -923 139 44 -66 -923 98 -923 192 -923 -923 102 92 -923 -923 44 92 -51 -923 176 -66 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 6 E= 1.5e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.500000 0.333333 0.166667 0.166667 0.666667 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.166667 0.166667 0.666667 0.166667 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.166667 0.333333 0.500000 0.000000 0.333333 0.000000 0.666667 0.333333 0.166667 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.333333 0.500000 0.166667 0.000000 0.833333 0.166667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- TT[CG]CTCAATCA[TG][TC][TA]C[AC][CA]A -------------------------------------------------------------------------------- Time 1.52 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 14 sites = 6 llr = 72 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :3:22:38a:3:77 pos.-specific C 2:::3:2:::3:22 probability G 7:a83:52:a::22 matrix T 27::2a::::3a:: bits 2.1 * * ** * 1.9 * * ** * 1.7 * * ** * 1.5 ** * *** * Relative 1.2 ** * *** * Entropy 1.0 *** * *** * (17.4 bits) 0.8 **** * *** *** 0.6 **** ***** *** 0.4 **** ********* 0.2 **** ********* 0.0 -------------- Multilevel GTGGCTGAAGATAA consensus A G A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- chr7:83898483-83898533 22 2.72e-07 GCTGTGTTCA GTGAGTGAAGATAA CTGTGTCGTA chr6:38850175-38850225 8 9.32e-07 CCCAGGA GTGGTTAAAGATAG ACATTAGCAC chr7:103910226-103910276 22 1.07e-06 GTATATGACC CTGGATAAAGTTAA GGGCTCAATC chr8:122306953-122307003 37 1.72e-06 CGCTCGCTTG GTGGCTGGAGCTCA chr7:90129415-90129465 20 2.32e-06 GTCAGCCTTG TAGGGTCAAGTTAA TCACTGTTGA chr2:35336422-35336472 37 2.81e-06 ATGAGCAGAG GAGGCTGAAGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:83898483-83898533 2.7e-07 21_[+3]_15 chr6:38850175-38850225 9.3e-07 7_[+3]_29 chr7:103910226-103910276 1.1e-06 21_[+3]_15 chr8:122306953-122307003 1.7e-06 36_[+3] chr7:90129415-90129465 2.3e-06 19_[+3]_17 chr2:35336422-35336472 2.8e-06 36_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=14 seqs=6 chr7:83898483-83898533 ( 22) GTGAGTGAAGATAA 1 chr6:38850175-38850225 ( 8) GTGGTTAAAGATAG 1 chr7:103910226-103910276 ( 22) CTGGATAAAGTTAA 1 chr8:122306953-122307003 ( 37) GTGGCTGGAGCTCA 1 chr7:90129415-90129465 ( 20) TAGGGTCAAGTTAA 1 chr2:35336422-35336472 ( 37) GAGGCTGAAGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 1332 bayes= 7.44512 E= 2.0e+002 -923 -66 149 -61 44 -923 -923 139 -923 -923 208 -923 -56 -923 181 -923 -56 34 49 -61 -923 -923 -923 198 44 -66 108 -923 176 -923 -51 -923 202 -923 -923 -923 -923 -923 208 -923 44 34 -923 39 -923 -923 -923 198 144 -66 -51 -923 144 -66 -51 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 6 E= 2.0e+002 0.000000 0.166667 0.666667 0.166667 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.333333 0.333333 0.166667 0.000000 0.000000 0.000000 1.000000 0.333333 0.166667 0.500000 0.000000 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.666667 0.166667 0.166667 0.000000 0.666667 0.166667 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- G[TA]GG[CG]T[GA]AAG[ACT]TAA -------------------------------------------------------------------------------- Time 2.12 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 11 sites = 4 llr = 49 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A :38::a::8:8 pos.-specific C :3:::::8::: probability G a:3:a:a3:a: matrix T :5:a::::3:3 bits 2.1 * **** * 1.9 * **** * 1.7 * **** * 1.5 * **** * Relative 1.2 * ********* Entropy 1.0 * ********* (17.6 bits) 0.8 * ********* 0.6 * ********* 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GTATGAGCAGA consensus AG GT T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr2:35336422-35336472 25 3.87e-07 AAAGAAACAA GAATGAGCAGA GGAGGCTGAA chr7:103827971-103828021 19 9.58e-07 TCTCTATCCT GTGTGAGCAGA TTGGCCCTTA chr7:83898483-83898533 1 1.36e-06 . GTATGAGCAGT GCTGTGTTCA chr16:17638395-17638445 8 5.51e-06 TCTGGCA GCATGAGGTGA CATGCCTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:35336422-35336472 3.9e-07 24_[+4]_15 chr7:103827971-103828021 9.6e-07 18_[+4]_21 chr7:83898483-83898533 1.4e-06 [+4]_39 chr16:17638395-17638445 5.5e-06 7_[+4]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=11 seqs=4 chr2:35336422-35336472 ( 25) GAATGAGCAGA 1 chr7:103827971-103828021 ( 19) GTGTGAGCAGA 1 chr7:83898483-83898533 ( 1) GTATGAGCAGT 1 chr16:17638395-17638445 ( 8) GCATGAGGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 1440 bayes= 8.48784 E= 4.3e+002 -865 -865 208 -865 3 -8 -865 98 161 -865 8 -865 -865 -865 -865 198 -865 -865 208 -865 202 -865 -865 -865 -865 -865 208 -865 -865 150 8 -865 161 -865 -865 -2 -865 -865 208 -865 161 -865 -865 -2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 4 E= 4.3e+002 0.000000 0.000000 1.000000 0.000000 0.250000 0.250000 0.000000 0.500000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- G[TAC][AG]TGAG[CG][AT]G[AT] -------------------------------------------------------------------------------- Time 2.68 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 20 sites = 2 llr = 46 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A ::5a:::a::a5a55::::a pos.-specific C ::::::5::a:5:::::::: probability G aa:::a5:5:::::::aa5: matrix T ::5:a:::5::::55a::5: bits 2.1 ** *** * * * *** * 1.9 ** *** * ** * *** * 1.7 ** *** * ** * *** * 1.5 ** *** * ** * *** * Relative 1.2 ** *** * ** * *** * Entropy 1.0 ******************** (33.4 bits) 0.8 ******************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel GGAATGCAGCAAAAATGGGA consensus T G T C TT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- chr2:27393912-27393962 8 1.98e-11 GTTTGCT GGAATGGATCAAATTTGGGA CTCCTAGAGT chr5:147442107-147442157 23 8.19e-11 TCGCAGTTGA GGTATGCAGCACAAATGGTA ATGTCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:27393912-27393962 2e-11 7_[+5]_23 chr5:147442107-147442157 8.2e-11 22_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=20 seqs=2 chr2:27393912-27393962 ( 8) GGAATGGATCAAATTTGGGA 1 chr5:147442107-147442157 ( 23) GGTATGCAGCACAAATGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 1116 bayes= 9.12153 E= 3.1e+003 -765 -765 207 -765 -765 -765 207 -765 102 -765 -765 97 202 -765 -765 -765 -765 -765 -765 197 -765 -765 207 -765 -765 92 108 -765 202 -765 -765 -765 -765 -765 108 97 -765 192 -765 -765 202 -765 -765 -765 102 92 -765 -765 202 -765 -765 -765 102 -765 -765 97 102 -765 -765 97 -765 -765 -765 197 -765 -765 207 -765 -765 -765 207 -765 -765 -765 108 97 202 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 2 E= 3.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- GG[AT]ATG[CG]A[GT]CA[AC]A[AT][AT]TGG[GT]A -------------------------------------------------------------------------------- Time 3.24 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 13 sites = 2 llr = 34 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A a:::::a:::::: pos.-specific C :a:5:a:::a::: probability G ::a::::aa:5aa matrix T :::5a:::::5:: bits 2.1 * * * *** ** 1.9 *** ****** ** 1.7 *** ****** ** 1.5 *** ****** ** Relative 1.2 *** ****** ** Entropy 1.0 ************* (24.2 bits) 0.8 ************* 0.6 ************* 0.4 ************* 0.2 ************* 0.0 ------------- Multilevel ACGCTCAGGCGGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------- chr8:122306953-122307003 1 1.27e-08 . ACGTTCAGGCGGG TCCAACGCGG chr18:78123212-78123262 28 5.38e-08 GATGCTACTT ACGCTCAGGCTGG CTTCCTGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:122306953-122307003 1.3e-08 [+6]_37 chr18:78123212-78123262 5.4e-08 27_[+6]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=13 seqs=2 chr8:122306953-122307003 ( 1) ACGTTCAGGCGGG 1 chr18:78123212-78123262 ( 28) ACGCTCAGGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 1368 bayes= 8.56605 E= 2.4e+003 202 -765 -765 -765 -765 192 -765 -765 -765 -765 207 -765 -765 92 -765 97 -765 -765 -765 197 -765 192 -765 -765 202 -765 -765 -765 -765 -765 207 -765 -765 -765 207 -765 -765 192 -765 -765 -765 -765 108 97 -765 -765 207 -765 -765 -765 207 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 2 E= 2.4e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- ACG[CT]TCAGGC[GT]GG -------------------------------------------------------------------------------- Time 3.77 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 13 sites = 2 llr = 31 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :a:::a:::5:a: pos.-specific C ::::5::555::: probability G a:aa::a5::a:a matrix T ::::5:::5:::: bits 2.1 **** ** *** 1.9 **** ** *** 1.7 **** ** *** 1.5 **** ** *** Relative 1.2 **** ** *** Entropy 1.0 ************* (22.4 bits) 0.8 ************* 0.6 ************* 0.4 ************* 0.2 ************* 0.0 ------------- Multilevel GAGGCAGCCAGAG consensus T GTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------- chr7:66079564-66079614 20 4.12e-08 GTCGAGCGTC GAGGTAGGTCGAG CCACGATAGG chr1:155039378-155039428 1 1.68e-07 . GAGGCAGCCAGAG ATCTCAGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:66079564-66079614 4.1e-08 19_[+7]_18 chr1:155039378-155039428 1.7e-07 [+7]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=13 seqs=2 chr7:66079564-66079614 ( 20) GAGGTAGGTCGAG 1 chr1:155039378-155039428 ( 1) GAGGCAGCCAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 1368 bayes= 9.41574 E= 4.0e+003 -765 -765 207 -765 202 -765 -765 -765 -765 -765 207 -765 -765 -765 207 -765 -765 92 -765 97 202 -765 -765 -765 -765 -765 207 -765 -765 92 108 -765 -765 92 -765 97 102 92 -765 -765 -765 -765 207 -765 202 -765 -765 -765 -765 -765 207 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 2 E= 4.0e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.000000 0.500000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- GAGG[CT]AG[CG][CT][AC]GAG -------------------------------------------------------------------------------- Time 4.26 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 9 sites = 2 llr = 24 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A ::a:a:aaa pos.-specific C ::::::::: probability G a5:a::::: matrix T :5:::a::: bits 2.1 * ******* 1.9 * ******* 1.7 * ******* 1.5 * ******* Relative 1.2 * ******* Entropy 1.0 ********* (17.3 bits) 0.8 ********* 0.6 ********* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel GGAGATAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- chr7:80629549-80629599 3 3.05e-06 AG GGAGATAAA TCCCGGCCAT chr2:27393912-27393962 36 6.31e-06 GACTCCTAGA GTAGATAAA CAGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:80629549-80629599 3e-06 2_[+8]_39 chr2:27393912-27393962 6.3e-06 35_[+8]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=9 seqs=2 chr7:80629549-80629599 ( 3) GGAGATAAA 1 chr2:27393912-27393962 ( 36) GTAGATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 1512 bayes= 9.56033 E= 4.0e+003 -765 -765 207 -765 -765 -765 108 97 202 -765 -765 -765 -765 -765 207 -765 202 -765 -765 -765 -765 -765 -765 197 202 -765 -765 -765 202 -765 -765 -765 202 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 2 E= 4.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- G[GT]AGATAAA -------------------------------------------------------------------------------- Time 4.72 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 11 sites = 7 llr = 70 E-value = 7.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A 33:6:::1::: pos.-specific C :7a:::93::: probability G 7:::9a1:339 matrix T :::41::6771 bits 2.1 * 1.9 * * 1.7 * * 1.5 * *** * Relative 1.2 * * *** *** Entropy 1.0 ******* *** (14.5 bits) 0.8 ******* *** 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GCCAGGCTTTG consensus AA T CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr11:121433515-12143356 33 9.37e-07 GGCCAGCACT GACAGGCTTTG CCCCTCT chr16:17638395-17638445 22 6.89e-06 GAGGTGACAT GCCTGGCCTGG TGCTTATCTC chr8:122309363-122309413 35 9.85e-06 ATCCTCCGGG GCCAGGCAGTG CACTA chr7:126126718-126126768 9 9.85e-06 ACAGGTTT GCCTTGCTTTG TTACCAAGGA chr7:81371653-81371703 32 1.07e-05 TCATCTCCAA GACAGGCCTGG GCACCAGG chr1:133825637-133825687 4 2.46e-05 GCC ACCTGGCTTTT GCTGACCTCA chr7:103827971-103828021 39 3.18e-05 ATTGGCCCTT ACCAGGGTGTG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:121433515-12143356 9.4e-07 32_[+9]_7 chr16:17638395-17638445 6.9e-06 21_[+9]_18 chr8:122309363-122309413 9.9e-06 34_[+9]_5 chr7:126126718-126126768 9.9e-06 8_[+9]_31 chr7:81371653-81371703 1.1e-05 31_[+9]_8 chr1:133825637-133825687 2.5e-05 3_[+9]_36 chr7:103827971-103828021 3.2e-05 38_[+9]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=11 seqs=7 chr11:121433515-12143356 ( 33) GACAGGCTTTG 1 chr16:17638395-17638445 ( 22) GCCTGGCCTGG 1 chr8:122309363-122309413 ( 35) GCCAGGCAGTG 1 chr7:126126718-126126768 ( 9) GCCTTGCTTTG 1 chr7:81371653-81371703 ( 32) GACAGGCCTGG 1 chr1:133825637-133825687 ( 4) ACCTGGCTTTT 1 chr7:103827971-103828021 ( 39) ACCAGGGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 1440 bayes= 8.90388 E= 7.4e+002 22 -945 159 -945 22 144 -945 -945 -945 192 -945 -945 122 -945 -945 75 -945 -945 186 -83 -945 -945 208 -945 -945 170 -73 -945 -78 11 -945 117 -945 -945 27 149 -945 -945 27 149 -945 -945 186 -83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 7 E= 7.4e+002 0.285714 0.000000 0.714286 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.428571 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.142857 0.285714 0.000000 0.571429 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.857143 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- [GA][CA]C[AT]GGC[TC][TG][TG]G -------------------------------------------------------------------------------- Time 5.18 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 9 sites = 2 llr = 24 E-value = 4.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :a::a::5: pos.-specific C :::a::a:: probability G a:a::a::a matrix T :::::::5: bits 2.1 *** ** * 1.9 ******* * 1.7 ******* * 1.5 ******* * Relative 1.2 ******* * Entropy 1.0 ********* (17.2 bits) 0.8 ********* 0.6 ********* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel GAGCAGCAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- chr7:83695979-83696029 34 6.65e-06 TTTTTCTATC GAGCAGCAG ATGGCGCT chr11:78066078-78066128 36 6.65e-06 ATCTCTTCCA GAGCAGCTG TGAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:83695979-83696029 6.7e-06 33_[+10]_8 chr11:78066078-78066128 6.7e-06 35_[+10]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=9 seqs=2 chr7:83695979-83696029 ( 34) GAGCAGCAG 1 chr11:78066078-78066128 ( 36) GAGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 1512 bayes= 9.56033 E= 4.1e+003 -765 -765 207 -765 202 -765 -765 -765 -765 -765 207 -765 -765 192 -765 -765 202 -765 -765 -765 -765 -765 207 -765 -765 192 -765 -765 102 -765 -765 97 -765 -765 207 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 2 E= 4.1e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- GAGCAGC[AT]G -------------------------------------------------------------------------------- Time 5.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:78066078-78066128 1.01e-01 35_[+10(6.65e-06)]_6 chr11:121433515-12143356 1.22e-04 16_[+1(1.59e-05)]_2_[+9(9.37e-07)]_7 chr11:96918280-96918330 1.18e-02 1_[+2(5.69e-08)]_31 chr11:96941206-96941256 3.01e-03 21_[+2(1.11e-07)]_11 chr16:17638395-17638445 1.01e-04 7_[+4(5.51e-06)]_3_[+9(6.89e-06)]_18 chr17:4626384-4626434 1.00e+00 50 chr18:78123212-78123262 2.46e-03 27_[+6(5.38e-08)]_10 chr1:133825637-133825687 1.55e-03 3_[+9(2.46e-05)]_10_[+1(8.21e-06)]_12 chr1:155039378-155039428 2.43e-05 [+7(1.68e-07)]_20_[+1(5.04e-06)]_3 chr2:35336422-35336472 1.24e-11 6_[+1(5.97e-07)]_4_[+4(3.87e-07)]_1_[+3(2.81e-06)] chr2:27393912-27393962 4.71e-09 7_[+5(1.98e-11)]_8_[+8(6.31e-06)]_6 chr3:21996079-21996129 2.19e-02 25_[+2(2.14e-07)]_7 chr5:147442107-147442157 1.46e-05 22_[+5(8.19e-11)]_8 chr6:38850175-38850225 8.50e-04 7_[+3(9.32e-07)]_29 chr6:88190792-88190842 7.91e-03 3_[+1(6.82e-06)]_33 chr6:38874545-38874595 7.07e-01 50 chr7:81371653-81371703 7.54e-06 13_[+2(9.51e-08)]_[+9(1.07e-05)]_8 chr7:126348348-126348398 7.24e-01 50 chr7:66079564-66079614 1.04e-03 19_[+7(4.12e-08)]_18 chr7:81828601-81828651 9.52e-01 50 chr7:83695979-83696029 2.13e-03 33_[+10(6.65e-06)]_8 chr7:80629549-80629599 1.77e-05 2_[+8(3.05e-06)]_9_[+2(1.16e-09)]_12 chr7:100684841-100684891 1.39e-02 29_[+1(2.60e-05)]_7 chr7:83898483-83898533 1.56e-07 [+4(1.36e-06)]_10_[+3(2.72e-07)]_15 chr7:103910226-103910276 7.41e-03 21_[+3(1.07e-06)]_15 chr7:65300616-65300666 3.50e-02 14_[+2(1.30e-07)]_18 chr7:128672443-128672493 5.25e-04 20_[+1(8.21e-06)]_16 chr7:126396996-126397046 6.23e-01 50 chr7:90129415-90129465 8.10e-03 19_[+3(2.32e-06)]_17 chr7:126126718-126126768 1.38e-03 8_[+9(9.85e-06)]_10_[+1(1.47e-05)]_7 chr7:103827971-103828021 2.48e-04 18_[+4(9.58e-07)]_9_[+9(3.18e-05)]_1 chr8:122306953-122307003 4.08e-06 [+6(1.27e-08)]_23_[+3(1.72e-06)] chr8:122329138-122329188 4.21e-03 17_[+1(1.99e-05)]_19 chr8:122309363-122309413 7.36e-02 34_[+9(9.85e-06)]_5 chr9:110668775-110668825 5.98e-01 50 chr9:96241584-96241634 4.20e-02 34_[+1(2.94e-06)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************