******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= GATA_No_Function.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:96918169-96918442 1.0000 273 chr11:121433123-12143395 1.0000 835 chr11:78065987-78066220 1.0000 233 chr11:96940896-96941567 1.0000 671 chr16:17637870-17638971 1.0000 1101 chr17:4625931-4626888 1.0000 957 chr18:78122914-78123561 1.0000 647 chr1:133824980-133826344 1.0000 1364 chr1:155039094-155039712 1.0000 618 chr2:27393823-27394052 1.0000 229 chr2:35336141-35336754 1.0000 613 chr3:21995865-21996344 1.0000 479 chr5:147441844-147442420 1.0000 576 chr6:38874491-38874649 1.0000 158 chr6:88190548-88191087 1.0000 539 chr6:38850036-38850365 1.0000 329 chr7:126126469-126127018 1.0000 549 chr7:100684517-100685216 1.0000 699 chr7:128672194-128672743 1.0000 549 chr7:126396697-126397346 1.0000 649 chr7:83898159-83898858 1.0000 699 chr7:81828352-81828901 1.0000 549 chr7:80629225-80629924 1.0000 699 chr7:83695530-83696479 1.0000 949 chr7:65300367-65300916 1.0000 549 chr7:103909977-103910526 1.0000 549 chr7:103827722-103828271 1.0000 549 chr7:81371254-81372103 1.0000 849 chr7:66079190-66079989 1.0000 799 chr7:90129166-90129715 1.0000 549 chr7:126348074-126348673 1.0000 599 chr8:122306654-122307303 1.0000 649 chr8:122309300-122309476 1.0000 176 chr8:122329039-122329288 1.0000 249 chr9:110668412-110669188 1.0000 776 chr9:96241257-96241962 1.0000 705 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme GATA_No_Function.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o GATA_No_Function.bed.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 36 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 21962 N= 36 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.257 C 0.245 G 0.245 T 0.253 Background letter frequencies (from dataset with add-one prior applied): A 0.257 C 0.245 G 0.245 T 0.253 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 15 sites = 36 llr = 301 E-value = 3.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1:4:4242328:38: pos.-specific C 17:3323478:14:1 probability G 33:7:413:::93:9 matrix T 4:6:3321::2::21 bits 2.0 1.8 1.6 * 1.4 * Relative 1.2 *** ** Entropy 1.0 *** **** ** (12.1 bits) 0.8 *** **** ** 0.6 *** **** ** 0.4 **** ******* 0.2 ***** ******** 0.0 --------------- Multilevel TCTGAGACCCAGCAG consensus GGACCTCGAAT GT sequence TAT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr5:147441844-147442420 359 2.64e-09 GAATGGCAAA GCTGAGACCCAGCAG GTTATCACTG chr7:100684517-100685216 681 1.69e-06 AGAGAGTTAG TGTGAAAGCCAGGAG AATG chr8:122306654-122307303 601 2.88e-06 GTTGCAAAAA CCAGAGAGCCAGAAG TCATGGGCCT chr8:122329039-122329288 134 3.99e-06 AGGAGCAGGC TCAGATCCACAGGAG AATTTAAAGT chr1:133824980-133826344 305 6.29e-06 GGAGGAGGGT GGAGCTAGCCAGGAG AACCAGAGGG chr9:96241257-96241962 248 8.33e-06 CATGTCTTGG TCTGTAGCCCTGCAG CAGCCTGGGG chr7:128672194-128672743 440 9.52e-06 TTAGGCTGGA GCTGTTTGACAGAAG GTCTGATGTG chr11:96918169-96918442 65 1.09e-05 AGACATAATC CCAGTGACCCTGCAG ACCTAGGGAC chr7:80629225-80629924 517 1.78e-05 AGTGATGGCT GCAGAGAGAAAGAAG AACAGTTAGC chr2:35336141-35336754 526 1.99e-05 TGCCATGCAG GCTGCACCCCAGCAC CCCCAAATCA chr7:126126469-126127018 524 2.24e-05 GAAAGAAAGA GCTGCAACCCACCAG GGAACAGGGG chr3:21995865-21996344 396 2.78e-05 CCTAGTTTTG GCTCAACTCCAGCAG TGCATACTCC chr17:4625931-4626888 668 2.78e-05 CATTCCATTC TCTTCGACCCAGAAG CACCGCAAAA chr7:66079190-66079989 208 3.09e-05 GGGACTCAAA TCTCATCTCCAGGAG GTTTCAAATC chr1:155039094-155039712 440 3.09e-05 TGAAGGCCTC TCTCTAGCCAAGCAG AGAGGGGAGT chr11:121433123-12143395 109 3.79e-05 ACCCTAATTA GGTCAGTCCCTGGAG TTGTGTAAGA chr7:81371254-81372103 828 4.18e-05 AGCCAGTCAG ACTGAGGGACTGCAG GCCAAGG chr7:83898159-83898858 151 4.18e-05 CACTCCCTCC TCAGTGCACCTGCTG TGGTCCCATG chr7:65300367-65300916 388 5.07e-05 TTCTTGGGTG GGTGATACCAAGATG GATGGGCTTA chr11:78065987-78066220 149 5.56e-05 GCAGGCAAGC TGTCTTAGCAAGAAG GGGGTGGGGA chr7:126396697-126397346 465 6.10e-05 GTCCTCAACC TCTGTGTGGCAGGAG TTCCATTCCA chr9:110668412-110669188 272 6.67e-05 GAGACTGTTG TCAGACTGCCTGGTG TAGCACAGGC chr16:17637870-17638971 367 6.67e-05 GAGGCCTCGC CCTGAGGCCCAGCAT AGGTTGCAGT chr7:83695530-83696479 66 7.29e-05 ATCAGCACCC TGTCCCCAACAGCAG GCCAGCTCTG chr7:81828352-81828901 179 7.29e-05 ACAAAAACCG TCACCTTGACTGCAG AAACTTGAAG chr18:78122914-78123561 468 7.29e-05 GCTCTTCAGG TCTGCGAACCAGTTG CTTTTCTCCT chr6:38850036-38850365 290 7.95e-05 ACTACATCAG TGAGCTGGCAAGAAG CATGGTGAGC chr7:103909977-103910526 143 9.41e-05 TGTCAGGCAC ACTCCCAAACAGGAG AACTGGGGCC chr7:126348074-126348673 392 1.02e-04 GTCTCTGGGG ACAGCAAGACAGATG GGGTCTGAAG chr7:103827722-103828271 8 1.02e-04 GCAGACC TCTGTCTCCAAGCAC CCAACTTCTT chr6:38874491-38874649 47 1.30e-04 CTGAATGGTA AGAGAGTCCATGCAG AAACCTAATT chr11:96940896-96941567 74 1.51e-04 GGGGCACACA GCAGAGCACCAGGTC AGAACCCAAC chr8:122309300-122309476 59 2.18e-04 TTGGGGTCAG GGTGCACCCCAGCTT CCCGAGTTAT chr7:90129166-90129715 460 3.68e-04 GACGTTTCCA ACACTCTCAAAGAAG ACGAGGGGGT chr2:27393823-27394052 125 5.22e-04 GACTCCTAGA GTAGATAAACAGGTG ATCCTGGGTG chr6:88190548-88191087 448 7.18e-04 CCCCCCTGCC CGTCTCCACCACCAG GCGATCCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:147441844-147442420 2.6e-09 358_[+1]_203 chr7:100684517-100685216 1.7e-06 680_[+1]_4 chr8:122306654-122307303 2.9e-06 600_[+1]_34 chr8:122329039-122329288 4e-06 133_[+1]_101 chr1:133824980-133826344 6.3e-06 304_[+1]_1045 chr9:96241257-96241962 8.3e-06 247_[+1]_443 chr7:128672194-128672743 9.5e-06 439_[+1]_95 chr11:96918169-96918442 1.1e-05 64_[+1]_194 chr7:80629225-80629924 1.8e-05 516_[+1]_168 chr2:35336141-35336754 2e-05 525_[+1]_73 chr7:126126469-126127018 2.2e-05 523_[+1]_11 chr3:21995865-21996344 2.8e-05 395_[+1]_69 chr17:4625931-4626888 2.8e-05 667_[+1]_275 chr7:66079190-66079989 3.1e-05 207_[+1]_577 chr1:155039094-155039712 3.1e-05 439_[+1]_164 chr11:121433123-12143395 3.8e-05 108_[+1]_712 chr7:81371254-81372103 4.2e-05 827_[+1]_7 chr7:83898159-83898858 4.2e-05 150_[+1]_534 chr7:65300367-65300916 5.1e-05 387_[+1]_147 chr11:78065987-78066220 5.6e-05 148_[+1]_70 chr7:126396697-126397346 6.1e-05 464_[+1]_170 chr9:110668412-110669188 6.7e-05 271_[+1]_490 chr16:17637870-17638971 6.7e-05 366_[+1]_720 chr7:83695530-83696479 7.3e-05 65_[+1]_869 chr7:81828352-81828901 7.3e-05 178_[+1]_356 chr18:78122914-78123561 7.3e-05 467_[+1]_165 chr6:38850036-38850365 7.9e-05 289_[+1]_25 chr7:103909977-103910526 9.4e-05 142_[+1]_392 chr7:126348074-126348673 0.0001 391_[+1]_193 chr7:103827722-103828271 0.0001 7_[+1]_527 chr6:38874491-38874649 0.00013 46_[+1]_97 chr11:96940896-96941567 0.00015 73_[+1]_583 chr8:122309300-122309476 0.00022 58_[+1]_103 chr7:90129166-90129715 0.00037 459_[+1]_75 chr2:27393823-27394052 0.00052 124_[+1]_90 chr6:88190548-88191087 0.00072 447_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=15 seqs=36 chr5:147441844-147442420 ( 359) GCTGAGACCCAGCAG 1 chr7:100684517-100685216 ( 681) TGTGAAAGCCAGGAG 1 chr8:122306654-122307303 ( 601) CCAGAGAGCCAGAAG 1 chr8:122329039-122329288 ( 134) TCAGATCCACAGGAG 1 chr1:133824980-133826344 ( 305) GGAGCTAGCCAGGAG 1 chr9:96241257-96241962 ( 248) TCTGTAGCCCTGCAG 1 chr7:128672194-128672743 ( 440) GCTGTTTGACAGAAG 1 chr11:96918169-96918442 ( 65) CCAGTGACCCTGCAG 1 chr7:80629225-80629924 ( 517) GCAGAGAGAAAGAAG 1 chr2:35336141-35336754 ( 526) GCTGCACCCCAGCAC 1 chr7:126126469-126127018 ( 524) GCTGCAACCCACCAG 1 chr3:21995865-21996344 ( 396) GCTCAACTCCAGCAG 1 chr17:4625931-4626888 ( 668) TCTTCGACCCAGAAG 1 chr7:66079190-66079989 ( 208) TCTCATCTCCAGGAG 1 chr1:155039094-155039712 ( 440) TCTCTAGCCAAGCAG 1 chr11:121433123-12143395 ( 109) GGTCAGTCCCTGGAG 1 chr7:81371254-81372103 ( 828) ACTGAGGGACTGCAG 1 chr7:83898159-83898858 ( 151) TCAGTGCACCTGCTG 1 chr7:65300367-65300916 ( 388) GGTGATACCAAGATG 1 chr11:78065987-78066220 ( 149) TGTCTTAGCAAGAAG 1 chr7:126396697-126397346 ( 465) TCTGTGTGGCAGGAG 1 chr9:110668412-110669188 ( 272) TCAGACTGCCTGGTG 1 chr16:17637870-17638971 ( 367) CCTGAGGCCCAGCAT 1 chr7:83695530-83696479 ( 66) TGTCCCCAACAGCAG 1 chr7:81828352-81828901 ( 179) TCACCTTGACTGCAG 1 chr18:78122914-78123561 ( 468) TCTGCGAACCAGTTG 1 chr6:38850036-38850365 ( 290) TGAGCTGGCAAGAAG 1 chr7:103909977-103910526 ( 143) ACTCCCAAACAGGAG 1 chr7:126348074-126348673 ( 392) ACAGCAAGACAGATG 1 chr7:103827722-103828271 ( 8) TCTGTCTCCAAGCAC 1 chr6:38874491-38874649 ( 47) AGAGAGTCCATGCAG 1 chr11:96940896-96941567 ( 74) GCAGAGCACCAGGTC 1 chr8:122309300-122309476 ( 59) GGTGCACCCCAGCTT 1 chr7:90129166-90129715 ( 460) ACACTCTCAAAGAAG 1 chr2:27393823-27394052 ( 125) GTAGATAAACAGGTG 1 chr6:88190548-88191087 ( 448) CGTCTCCACCACCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 21458 bayes= 9.21688 E= 3.4e+000 -89 -114 45 72 -1181 150 18 -318 60 -1181 -1181 127 -1181 18 150 -318 70 32 -1181 13 -21 -56 56 -2 60 3 -82 -19 -40 77 45 -219 11 150 -314 -1181 -21 167 -1181 -1181 160 -1181 -1181 -19 -1181 -214 195 -1181 -4 86 18 -318 160 -1181 -1181 -19 -1181 -156 181 -219 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 36 E= 3.4e+000 0.138889 0.111111 0.333333 0.416667 0.000000 0.694444 0.277778 0.027778 0.388889 0.000000 0.000000 0.611111 0.000000 0.277778 0.694444 0.027778 0.416667 0.305556 0.000000 0.277778 0.222222 0.166667 0.361111 0.250000 0.388889 0.250000 0.138889 0.222222 0.194444 0.416667 0.333333 0.055556 0.277778 0.694444 0.027778 0.000000 0.222222 0.777778 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.000000 0.055556 0.944444 0.000000 0.250000 0.444444 0.277778 0.027778 0.777778 0.000000 0.000000 0.222222 0.000000 0.083333 0.861111 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TG][CG][TA][GC][ACT][GTA][ACT][CG][CA][CA][AT]G[CGA][AT]G -------------------------------------------------------------------------------- Time 23.08 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 11 sites = 36 llr = 279 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :413::::::1 pos.-specific C 8691:366:44 probability G ::::761::51 matrix T 2::63134a:4 bits 2.0 * 1.8 * 1.6 * 1.4 * * Relative 1.2 * * * * Entropy 1.0 *** * ** (11.2 bits) 0.8 *** * **** 0.6 ********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CCCTGGCCTGT consensus A ATCTT CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr7:80629225-80629924 401 2.10e-06 ATATCTGTCT CCCTGGCTTGT CCCCAGACCT chr16:17637870-17638971 130 3.38e-06 GGAAGTAATT CCCTGGCTTCC TCCAGGGTGG chr6:88190548-88191087 296 1.29e-05 GGAAACAATT CCCAGCCCTGT ACAACCCCAT chr7:128672194-128672743 287 1.92e-05 AGCAGACACC TCCTGGCCTCC AGCAGGAGCC chr11:78065987-78066220 13 1.92e-05 GCTGTATCCA CACTGGCCTGA GGGCATGGCA chr1:155039094-155039712 506 2.56e-05 ACCCCGAGTG CACTGCTCTGC TCAGTGGCCT chr18:78122914-78123561 549 2.56e-05 TGGGGGTGGC CCCTGGCTTCA GTGCCTCCTG chr7:83898159-83898858 171 2.95e-05 TGCTGTGGTC CCATGGCCTGT TGTATCTGTG chr7:126396697-126397346 292 3.44e-05 TTCCTCCTGA CCCAGCCTTCC CCAGGGCCCG chr2:27393823-27394052 189 3.44e-05 ACACCAAGGC CACTTGCTTCC TCTATGGCCA chr7:103827722-103828271 250 3.77e-05 CTGCCCTGGC TCCTGCCCTCT CTATCCTGTG chr2:35336141-35336754 371 4.76e-05 CCAGGGTCTG TCCTGGTCTGC GTGCACCGCC chr17:4625931-4626888 937 4.76e-05 TCCAACCCAT CACTGCTTTGT TCTGTAGTCG chr7:66079190-66079989 351 5.65e-05 CATCTTTCAG CCCCGCCCTCT GGTCACACCC chr7:90129166-90129715 220 6.18e-05 CGAGCTGTCT CACTTCCTTCT ATGGTGTGGA chr8:122306654-122307303 130 6.84e-05 GGACTCTGAC CCATGGCTTCC CGGGGAGCTG chr7:126348074-126348673 135 7.65e-05 TTGTAACAGT CCCATCCTTGT CACCACGACT chr7:65300367-65300916 523 7.65e-05 CCAGTGGCAC CACTTCTCTGC AGAAGGCTCA chr7:126126469-126127018 249 7.65e-05 CAGCTACAGG CACAGGTTTGC CTTGCTTTGT chr6:38850036-38850365 3 7.65e-05 TT CCCATCCTTGC TCACCCTCTG chr7:81828352-81828901 277 1.06e-04 CCCTGACAAC CCCAGTCCTCT AAGACCCTTC chr7:81371254-81372103 612 1.42e-04 CTCACAGCTA CCATTGCTTGC AAAACAGCTC chr7:100684517-100685216 18 1.42e-04 CTCAGAAATC CACCTGCCTCT GCCTCCCGAG chr1:133824980-133826344 144 1.42e-04 TAGCCATGGT CCCCGCTCTCC AGATGCAGGG chr9:110668412-110669188 290 1.52e-04 CCTGGTGTAG CACAGGCCTGG TGGTGTAGCA chr11:121433123-12143395 287 1.69e-04 CAGTCAATGT TCCTTGCCTGA GTGTGTGCCC chr8:122329039-122329288 100 2.13e-04 CAGAGTCGGA CACTGACCTCT TTGTTGGGGG chr6:38874491-38874649 16 2.13e-04 ATAGGTTATT TACAGCCTTGT TATTCAGAGC chr3:21995865-21996344 217 2.32e-04 CAGACCCATG CCCATGGCTGC CTAAGAAAAC chr7:103909977-103910526 434 2.53e-04 ATAAGGTCAG CCCCTGCCTCA ATGCCCAGAA chr8:122309300-122309476 35 2.68e-04 AGGCCCTGCT CCATGGGCTGT GGTTTGGGGT chr9:96241257-96241962 322 3.37e-04 ATGAGGACAT TCCTGGTCTGG GCTGCCACCT chr11:96918169-96918442 253 3.37e-04 CTCCAATAGC CACAGTTCTCT CGAGGTAGCG chr11:96940896-96941567 100 4.08e-04 GAACCCAACC CACTGTTCTCA CCCCGGAGCA chr7:83695530-83696479 243 4.94e-04 TAAGCTCCGT CCATTGGCTGC TGTTCTATTT chr5:147441844-147442420 123 9.96e-04 CTCCTTTATA TACTGGTTTTT TTTTTTTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:80629225-80629924 2.1e-06 400_[+2]_288 chr16:17637870-17638971 3.4e-06 129_[+2]_961 chr6:88190548-88191087 1.3e-05 295_[+2]_233 chr7:128672194-128672743 1.9e-05 286_[+2]_252 chr11:78065987-78066220 1.9e-05 12_[+2]_210 chr1:155039094-155039712 2.6e-05 505_[+2]_102 chr18:78122914-78123561 2.6e-05 548_[+2]_88 chr7:83898159-83898858 3e-05 170_[+2]_518 chr7:126396697-126397346 3.4e-05 291_[+2]_347 chr2:27393823-27394052 3.4e-05 188_[+2]_30 chr7:103827722-103828271 3.8e-05 249_[+2]_289 chr2:35336141-35336754 4.8e-05 370_[+2]_232 chr17:4625931-4626888 4.8e-05 936_[+2]_10 chr7:66079190-66079989 5.6e-05 350_[+2]_438 chr7:90129166-90129715 6.2e-05 219_[+2]_319 chr8:122306654-122307303 6.8e-05 129_[+2]_509 chr7:126348074-126348673 7.6e-05 134_[+2]_454 chr7:65300367-65300916 7.6e-05 522_[+2]_16 chr7:126126469-126127018 7.6e-05 248_[+2]_290 chr6:38850036-38850365 7.6e-05 2_[+2]_316 chr7:81828352-81828901 0.00011 276_[+2]_262 chr7:81371254-81372103 0.00014 611_[+2]_227 chr7:100684517-100685216 0.00014 17_[+2]_671 chr1:133824980-133826344 0.00014 143_[+2]_1210 chr9:110668412-110669188 0.00015 289_[+2]_476 chr11:121433123-12143395 0.00017 286_[+2]_538 chr8:122329039-122329288 0.00021 99_[+2]_139 chr6:38874491-38874649 0.00021 15_[+2]_132 chr3:21995865-21996344 0.00023 216_[+2]_252 chr7:103909977-103910526 0.00025 433_[+2]_105 chr8:122309300-122309476 0.00027 34_[+2]_131 chr9:96241257-96241962 0.00034 321_[+2]_373 chr11:96918169-96918442 0.00034 252_[+2]_10 chr11:96940896-96941567 0.00041 99_[+2]_561 chr7:83695530-83696479 0.00049 242_[+2]_696 chr5:147441844-147442420 0.001 122_[+2]_443 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=11 seqs=36 chr7:80629225-80629924 ( 401) CCCTGGCTTGT 1 chr16:17637870-17638971 ( 130) CCCTGGCTTCC 1 chr6:88190548-88191087 ( 296) CCCAGCCCTGT 1 chr7:128672194-128672743 ( 287) TCCTGGCCTCC 1 chr11:78065987-78066220 ( 13) CACTGGCCTGA 1 chr1:155039094-155039712 ( 506) CACTGCTCTGC 1 chr18:78122914-78123561 ( 549) CCCTGGCTTCA 1 chr7:83898159-83898858 ( 171) CCATGGCCTGT 1 chr7:126396697-126397346 ( 292) CCCAGCCTTCC 1 chr2:27393823-27394052 ( 189) CACTTGCTTCC 1 chr7:103827722-103828271 ( 250) TCCTGCCCTCT 1 chr2:35336141-35336754 ( 371) TCCTGGTCTGC 1 chr17:4625931-4626888 ( 937) CACTGCTTTGT 1 chr7:66079190-66079989 ( 351) CCCCGCCCTCT 1 chr7:90129166-90129715 ( 220) CACTTCCTTCT 1 chr8:122306654-122307303 ( 130) CCATGGCTTCC 1 chr7:126348074-126348673 ( 135) CCCATCCTTGT 1 chr7:65300367-65300916 ( 523) CACTTCTCTGC 1 chr7:126126469-126127018 ( 249) CACAGGTTTGC 1 chr6:38850036-38850365 ( 3) CCCATCCTTGC 1 chr7:81828352-81828901 ( 277) CCCAGTCCTCT 1 chr7:81371254-81372103 ( 612) CCATTGCTTGC 1 chr7:100684517-100685216 ( 18) CACCTGCCTCT 1 chr1:133824980-133826344 ( 144) CCCCGCTCTCC 1 chr9:110668412-110669188 ( 290) CACAGGCCTGG 1 chr11:121433123-12143395 ( 287) TCCTTGCCTGA 1 chr8:122329039-122329288 ( 100) CACTGACCTCT 1 chr6:38874491-38874649 ( 16) TACAGCCTTGT 1 chr3:21995865-21996344 ( 217) CCCATGGCTGC 1 chr7:103909977-103910526 ( 434) CCCCTGCCTCA 1 chr8:122309300-122309476 ( 35) CCATGGGCTGT 1 chr9:96241257-96241962 ( 322) TCCTGGTCTGG 1 chr11:96918169-96918442 ( 253) CACAGTTCTCT 1 chr11:96940896-96941567 ( 100) CACTGTTCTCA 1 chr7:83695530-83696479 ( 243) CCATTGGCTGC 1 chr5:147441844-147442420 ( 123) TACTGGTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 21602 bayes= 9.22655 E= 1.4e+002 -1181 172 -1181 -38 60 132 -1181 -1181 -89 181 -1181 -1181 11 -114 -1181 127 -1181 -1181 150 27 -321 44 118 -160 -1181 138 -155 13 -1181 132 -1181 62 -1181 -1181 -1181 198 -1181 86 111 -318 -89 67 -214 72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 36 E= 1.4e+002 0.000000 0.805556 0.000000 0.194444 0.388889 0.611111 0.000000 0.000000 0.138889 0.861111 0.000000 0.000000 0.277778 0.111111 0.000000 0.611111 0.000000 0.000000 0.694444 0.305556 0.027778 0.333333 0.555556 0.083333 0.000000 0.638889 0.083333 0.277778 0.000000 0.611111 0.000000 0.388889 0.000000 0.000000 0.000000 1.000000 0.000000 0.444444 0.527778 0.027778 0.138889 0.388889 0.055556 0.416667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[CA]C[TA][GT][GC][CT][CT]T[GC][TC] -------------------------------------------------------------------------------- Time 44.92 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 15 sites = 11 llr = 146 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :::21:54193:29: pos.-specific C :16:::::1:::2:6 probability G 99:39a36817a6:4 matrix T 1:45::3::::::1: bits 2.0 * * 1.8 * * 1.6 ** ** * * * 1.4 ** ** * * * Relative 1.2 ** ** **** * Entropy 1.0 *** ** ***** ** (19.1 bits) 0.8 *** ** ***** ** 0.6 ****** ******** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GGCTGGAGGAGGGAC consensus TG GA A G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr8:122306654-122307303 570 2.41e-09 TTGGGTGCGG GGCTGGTGGAGGGAC CCAGCTGTTG chr7:126126469-126127018 336 8.24e-08 CTAATGTGCA GGCTGGAGGGGGGAC ACGCCCCTGA chr1:155039094-155039712 466 1.45e-07 GAGGGGAGTG GGTGGGAGGAAGGAG AGAGTTTTAT chr1:133824980-133826344 411 1.70e-07 TAGGAGGGGC TGCTGGTGGAGGGAC TGGAACCAGA chr16:17637870-17638971 203 3.91e-07 CTGGGATTGT GGCTGGAGAAGGAAC TGGGGAGAAA chr9:96241257-96241962 15 4.52e-07 ATGCAGCGTG GGCAGGTGGAAGCAC CCCAGAGGCC chr17:4625931-4626888 3 5.16e-07 GA GGCTGGGACAGGGAG ACTTTGCACG chr8:122329039-122329288 176 8.63e-07 GTCATCCAGG GCTGGGGGGAGGGAG AGTTGGAGCC chr2:35336141-35336754 183 9.65e-07 AGCTGGGGAC GGCAGGAAGAGGGTG GGAGTTCTTC chr11:78065987-78066220 166 9.65e-07 GCAAGAAGGG GGTGGGGAGAAGAAC CTCCTAGCTG chr7:65300367-65300916 7 1.15e-06 CTCTAG GGTTAGAAGAGGCAC CTTTGCGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:122306654-122307303 2.4e-09 569_[+3]_65 chr7:126126469-126127018 8.2e-08 335_[+3]_199 chr1:155039094-155039712 1.4e-07 465_[+3]_138 chr1:133824980-133826344 1.7e-07 410_[+3]_939 chr16:17637870-17638971 3.9e-07 202_[+3]_884 chr9:96241257-96241962 4.5e-07 14_[+3]_676 chr17:4625931-4626888 5.2e-07 2_[+3]_940 chr8:122329039-122329288 8.6e-07 175_[+3]_59 chr2:35336141-35336754 9.6e-07 182_[+3]_416 chr11:78065987-78066220 9.6e-07 165_[+3]_53 chr7:65300367-65300916 1.1e-06 6_[+3]_528 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=11 chr8:122306654-122307303 ( 570) GGCTGGTGGAGGGAC 1 chr7:126126469-126127018 ( 336) GGCTGGAGGGGGGAC 1 chr1:155039094-155039712 ( 466) GGTGGGAGGAAGGAG 1 chr1:133824980-133826344 ( 411) TGCTGGTGGAGGGAC 1 chr16:17637870-17638971 ( 203) GGCTGGAGAAGGAAC 1 chr9:96241257-96241962 ( 15) GGCAGGTGGAAGCAC 1 chr17:4625931-4626888 ( 3) GGCTGGGACAGGGAG 1 chr8:122329039-122329288 ( 176) GCTGGGGGGAGGGAG 1 chr2:35336141-35336754 ( 183) GGCAGGAAGAGGGTG 1 chr11:78065987-78066220 ( 166) GGTGGGGAGAAGAAC 1 chr7:65300367-65300916 ( 7) GGTTAGAAGAGGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 21458 bayes= 11.9559 E= 4.3e+003 -1010 -1010 189 -148 -1010 -143 189 -1010 -1010 138 -1010 52 -50 -1010 16 111 -150 -1010 189 -1010 -1010 -1010 203 -1010 82 -1010 16 11 50 -1010 138 -1010 -150 -143 174 -1010 182 -1010 -143 -1010 9 -1010 157 -1010 -1010 -1010 203 -1010 -50 -43 138 -1010 182 -1010 -1010 -148 -1010 138 57 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 11 E= 4.3e+003 0.000000 0.000000 0.909091 0.090909 0.000000 0.090909 0.909091 0.000000 0.000000 0.636364 0.000000 0.363636 0.181818 0.000000 0.272727 0.545455 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.454545 0.000000 0.272727 0.272727 0.363636 0.000000 0.636364 0.000000 0.090909 0.090909 0.818182 0.000000 0.909091 0.000000 0.090909 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.181818 0.636364 0.000000 0.909091 0.000000 0.000000 0.090909 0.000000 0.636364 0.363636 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- GG[CT][TG]GG[AGT][GA]GA[GA]GGA[CG] -------------------------------------------------------------------------------- Time 66.50 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 8 sites = 36 llr = 256 E-value = 8.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 2a:83a83 pos.-specific C 6:::3::: probability G 2:a2::26 matrix T ::::4::1 bits 2.0 * * 1.8 ** * 1.6 ** * 1.4 ** ** Relative 1.2 *** ** Entropy 1.0 *** ** (10.2 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus A A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:126126469-126127018 153 1.62e-05 GTGAGGAGAA CAGATAAG GAGAGAGGCC chr6:38874491-38874649 109 1.62e-05 ATTTTCTTTT CAGATAAG TTTTTTTTTT chr3:21995865-21996344 184 1.62e-05 AATGGTGGCC CAGATAAG ACTGTCACAG chr1:133824980-133826344 606 1.62e-05 GACAAGGGCA CAGATAAG CCTTGACAGT chr7:83898159-83898858 208 3.19e-05 AAGCTCAAGT CAGACAAG CCTTGAGAAG chr7:81371254-81372103 552 4.84e-05 TCAGGGCAAA CAGAAAAG CTGTATCTGC chr2:35336141-35336754 292 4.84e-05 GGCGCTGGGG CAGAAAAG AAACAAGAAT chr18:78122914-78123561 71 4.84e-05 CAAGAGAGGA CAGAAAAG AAGGCGAGCA chr8:122329039-122329288 35 6.55e-05 GGAACAGCCG CAGATAAA GTCGTCTCAG chr7:103909977-103910526 520 6.55e-05 ATGATATAGC CAGATAAA TTCACTCTTT chr7:126348074-126348673 461 8.25e-05 TGCAGGGGGC AAGATAAG TTTGTGTGGA chr11:96940896-96941567 401 8.25e-05 CTGTTTTTGG AAGATAAG AGGTTTTAGG chr6:88190548-88191087 252 9.87e-05 CTGGAAGGCA GAGATAAG AAACACCATT chr1:155039094-155039712 347 9.87e-05 CTGCTGCAAA GAGATAAG GACCATTCTG chr7:83695530-83696479 712 1.31e-04 TTACAACAGT CAGGTAAG GTCATGTCCC chr7:80629225-80629924 584 1.31e-04 CAACTGGTAA CAGACAAA AGCCGGAGCT chr8:122309300-122309476 124 1.63e-04 TCGGCTCCCA CAGATAGG AATTTCTGTG chr7:126396697-126397346 392 1.63e-04 TCGGAAGCCA CAGAAAAA GCCTTGTGGA chr9:96241257-96241962 109 1.80e-04 ATGGGAGAGA AAGACAAG CAAGGATGGT chr17:4625931-4626888 141 1.80e-04 GGCCTCTAAG AAGACAAG GGCCTGAACC chr7:90129166-90129715 123 2.61e-04 CACACAAGAG GAGAAAAG AGGCCAAAGG chr11:78065987-78066220 140 2.61e-04 CAGCTGTGAG CAGGCAAG CTGTCTTAGC chr11:121433123-12143395 753 2.61e-04 CACTGGGACC CAGGCAAG TTAACTCCTC chr8:122306654-122307303 529 2.92e-04 TCTGGCCCGC CAGGAAAG CAAACATGCC chr7:81828352-81828901 399 3.24e-04 GCCCGGGCGA CAGACAAT TCCGCTACTG chr7:100684517-100685216 212 3.59e-04 CTGCTCTAAC AAGATAAA GTACCTTGAA chr7:65300367-65300916 428 5.57e-04 TTGATTAGGT CAGGCAAA CAACCTAGCA chr16:17637870-17638971 222 5.57e-04 AGGAACTGGG GAGAAAAA CACTCCTACT chr9:110668412-110669188 475 7.17e-04 TGCGTGATAA GAGGCAAG GAAAGCTACA chr7:66079190-66079989 112 7.80e-04 AGTGGATCAG AAGAAAGG AATTCTAAGT chr5:147441844-147442420 250 8.26e-04 ACCTGATTTA CAGATAGT CTTCCATTGT chr7:103827722-103828271 520 9.42e-04 TCTCATTATG CAAATAAG AAATTGAGAA chr7:128672194-128672743 205 9.91e-04 GTGTGCACGC CAGGAAAT AACCTCTTCC chr2:27393823-27394052 160 9.91e-04 ACAAGCTGGC CAGACAGT CCCCAGGGCA chr6:38850036-38850365 154 1.04e-03 GGAGTGGTTA AAGATAGA CATTAGCACA chr11:96918169-96918442 50 1.28e-03 GAAAGGATGA GAGAAAGA CATAATCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:126126469-126127018 1.6e-05 152_[+4]_389 chr6:38874491-38874649 1.6e-05 108_[+4]_42 chr3:21995865-21996344 1.6e-05 183_[+4]_288 chr1:133824980-133826344 1.6e-05 605_[+4]_751 chr7:83898159-83898858 3.2e-05 207_[+4]_484 chr7:81371254-81372103 4.8e-05 551_[+4]_290 chr2:35336141-35336754 4.8e-05 291_[+4]_314 chr18:78122914-78123561 4.8e-05 70_[+4]_569 chr8:122329039-122329288 6.5e-05 34_[+4]_207 chr7:103909977-103910526 6.5e-05 519_[+4]_22 chr7:126348074-126348673 8.2e-05 460_[+4]_131 chr11:96940896-96941567 8.2e-05 400_[+4]_263 chr6:88190548-88191087 9.9e-05 251_[+4]_280 chr1:155039094-155039712 9.9e-05 346_[+4]_264 chr7:83695530-83696479 0.00013 711_[+4]_230 chr7:80629225-80629924 0.00013 583_[+4]_108 chr8:122309300-122309476 0.00016 123_[+4]_45 chr7:126396697-126397346 0.00016 391_[+4]_250 chr9:96241257-96241962 0.00018 108_[+4]_589 chr17:4625931-4626888 0.00018 140_[+4]_809 chr7:90129166-90129715 0.00026 122_[+4]_419 chr11:78065987-78066220 0.00026 139_[+4]_86 chr11:121433123-12143395 0.00026 752_[+4]_75 chr8:122306654-122307303 0.00029 528_[+4]_113 chr7:81828352-81828901 0.00032 398_[+4]_143 chr7:100684517-100685216 0.00036 211_[+4]_480 chr7:65300367-65300916 0.00056 427_[+4]_114 chr16:17637870-17638971 0.00056 221_[+4]_872 chr9:110668412-110669188 0.00072 474_[+4]_294 chr7:66079190-66079989 0.00078 111_[+4]_680 chr5:147441844-147442420 0.00083 249_[+4]_319 chr7:103827722-103828271 0.00094 519_[+4]_22 chr7:128672194-128672743 0.00099 204_[+4]_337 chr2:27393823-27394052 0.00099 159_[+4]_62 chr6:38850036-38850365 0.001 153_[+4]_168 chr11:96918169-96918442 0.0013 49_[+4]_216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=8 seqs=36 chr7:126126469-126127018 ( 153) CAGATAAG 1 chr6:38874491-38874649 ( 109) CAGATAAG 1 chr3:21995865-21996344 ( 184) CAGATAAG 1 chr1:133824980-133826344 ( 606) CAGATAAG 1 chr7:83898159-83898858 ( 208) CAGACAAG 1 chr7:81371254-81372103 ( 552) CAGAAAAG 1 chr2:35336141-35336754 ( 292) CAGAAAAG 1 chr18:78122914-78123561 ( 71) CAGAAAAG 1 chr8:122329039-122329288 ( 35) CAGATAAA 1 chr7:103909977-103910526 ( 520) CAGATAAA 1 chr7:126348074-126348673 ( 461) AAGATAAG 1 chr11:96940896-96941567 ( 401) AAGATAAG 1 chr6:88190548-88191087 ( 252) GAGATAAG 1 chr1:155039094-155039712 ( 347) GAGATAAG 1 chr7:83695530-83696479 ( 712) CAGGTAAG 1 chr7:80629225-80629924 ( 584) CAGACAAA 1 chr8:122309300-122309476 ( 124) CAGATAGG 1 chr7:126396697-126397346 ( 392) CAGAAAAA 1 chr9:96241257-96241962 ( 109) AAGACAAG 1 chr17:4625931-4626888 ( 141) AAGACAAG 1 chr7:90129166-90129715 ( 123) GAGAAAAG 1 chr11:78065987-78066220 ( 140) CAGGCAAG 1 chr11:121433123-12143395 ( 753) CAGGCAAG 1 chr8:122306654-122307303 ( 529) CAGGAAAG 1 chr7:81828352-81828901 ( 399) CAGACAAT 1 chr7:100684517-100685216 ( 212) AAGATAAA 1 chr7:65300367-65300916 ( 428) CAGGCAAA 1 chr16:17637870-17638971 ( 222) GAGAAAAA 1 chr9:110668412-110669188 ( 475) GAGGCAAG 1 chr7:66079190-66079989 ( 112) AAGAAAGG 1 chr5:147441844-147442420 ( 250) CAGATAGT 1 chr7:103827722-103828271 ( 520) CAAATAAG 1 chr7:128672194-128672743 ( 205) CAGGAAAT 1 chr2:27393823-27394052 ( 160) CAGACAGT 1 chr6:38850036-38850365 ( 154) AAGATAGA 1 chr11:96918169-96918442 ( 50) GAGAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 21710 bayes= 9.36827 E= 8.1e+004 -40 138 -55 -1181 196 -1181 -1181 -1181 -321 -1181 199 -1181 165 -1181 -33 -1181 11 18 -1181 81 196 -1181 -1181 -1181 170 -1181 -55 -1181 -4 -1181 138 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 8.1e+004 0.194444 0.638889 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.027778 0.000000 0.972222 0.000000 0.805556 0.000000 0.194444 0.000000 0.277778 0.277778 0.000000 0.444444 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.250000 0.000000 0.638889 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- CAGA[TAC]AA[GA] -------------------------------------------------------------------------------- Time 87.98 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 25 sites = 2 llr = 63 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::::::a::a: pos.-specific C ::::aa:::a:::5a:a:5a:aa:: probability G aa55::5aa::aa:::::::::::a matrix T ::55::5:::a::5:a:a5:::::: bits 2.0 ** ** ****** **** ****** 1.8 ** ** ****** **** ****** 1.6 ** ** ****** **** ****** 1.4 ** ** ****** **** ****** Relative 1.2 ** ** ****** **** ****** Entropy 1.0 ************************* (45.3 bits) 0.8 ************************* 0.6 ************************* 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel GGGGCCGGGCTGGCCTCTCCACCAG consensus TT T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:80629225-80629924 442 1.09e-14 GGGTGGAAGC GGTTCCGGGCTGGCCTCTCCACCAG CCCATGGTGG chr1:133824980-133826344 707 1.81e-14 GCAAGGAACA GGGGCCTGGCTGGTCTCTTCACCAG CTCTGTGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:80629225-80629924 1.1e-14 441_[+5]_233 chr1:133824980-133826344 1.8e-14 706_[+5]_633 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=25 seqs=2 chr7:80629225-80629924 ( 442) GGTTCCGGGCTGGCCTCTCCACCAG 1 chr1:133824980-133826344 ( 707) GGGGCCTGGCTGGTCTCTTCACCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 21098 bayes= 13.3647 E= 1.0e+005 -765 -765 202 -765 -765 -765 202 -765 -765 -765 103 98 -765 -765 103 98 -765 202 -765 -765 -765 202 -765 -765 -765 -765 103 98 -765 -765 202 -765 -765 -765 202 -765 -765 202 -765 -765 -765 -765 -765 198 -765 -765 202 -765 -765 -765 202 -765 -765 102 -765 98 -765 202 -765 -765 -765 -765 -765 198 -765 202 -765 -765 -765 -765 -765 198 -765 102 -765 98 -765 202 -765 -765 196 -765 -765 -765 -765 202 -765 -765 -765 202 -765 -765 196 -765 -765 -765 -765 -765 202 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 2 E= 1.0e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- GG[GT][GT]CC[GT]GGCTGG[CT]CTCT[CT]CACCAG -------------------------------------------------------------------------------- Time 108.56 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 21 sites = 2 llr = 53 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A ::::::::::5::a::::::: pos.-specific C ::a:::5:aa:aa:::a5a:: probability G aa:a5a:a::5::::a:::aa matrix T ::::5:5:::::::a::5::: bits 2.0 **** * *** ****** *** 1.8 **** * *** ****** *** 1.6 **** * *** ****** *** 1.4 **** * *** ****** *** Relative 1.2 **** * *** ****** *** Entropy 1.0 ********************* (38.4 bits) 0.8 ********************* 0.6 ********************* 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel GGCGGGCGCCACCATGCCCGG consensus T T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr7:66079190-66079989 609 8.29e-13 GGTCAGGGGC GGCGGGCGCCGCCATGCTCGG TGGGTCGGCC chr7:100684517-100685216 52 2.59e-12 TGGGATTAAA GGCGTGTGCCACCATGCCCGG CCCAAGGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:66079190-66079989 8.3e-13 608_[+6]_170 chr7:100684517-100685216 2.6e-12 51_[+6]_627 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=21 seqs=2 chr7:66079190-66079989 ( 609) GGCGGGCGCCGCCATGCTCGG 1 chr7:100684517-100685216 ( 52) GGCGTGTGCCACCATGCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 21242 bayes= 13.3745 E= 1.0e+005 -765 -765 202 -765 -765 -765 202 -765 -765 202 -765 -765 -765 -765 202 -765 -765 -765 103 98 -765 -765 202 -765 -765 102 -765 98 -765 -765 202 -765 -765 202 -765 -765 -765 202 -765 -765 96 -765 103 -765 -765 202 -765 -765 -765 202 -765 -765 196 -765 -765 -765 -765 -765 -765 198 -765 -765 202 -765 -765 202 -765 -765 -765 102 -765 98 -765 202 -765 -765 -765 -765 202 -765 -765 -765 202 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 2 E= 1.0e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- GGCG[GT]G[CT]GCC[AG]CCATGC[CT]CGG -------------------------------------------------------------------------------- Time 129.02 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 17 sites = 2 llr = 47 E-value = 9.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :::a:aa:a:::::::: pos.-specific C ::a::::::::a:aa:a probability G :a::a::a:aa:a:::: matrix T a::::::::::::::a: bits 2.0 ***************** 1.8 ***************** 1.6 ***************** 1.4 ***************** Relative 1.2 ***************** Entropy 1.0 ***************** (34.1 bits) 0.8 ***************** 0.6 ***************** 0.4 ***************** 0.2 ***************** 0.0 ----------------- Multilevel TGCAGAAGAGGCGCCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------- chr2:35336141-35336754 329 5.33e-11 AGGCTGAAGC TGCAGAAGAGGCGCCTC TACCACTCCT chr18:78122914-78123561 420 5.33e-11 GGAGAGGTGG TGCAGAAGAGGCGCCTC ACCCTTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:35336141-35336754 5.3e-11 328_[+7]_268 chr18:78122914-78123561 5.3e-11 419_[+7]_211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=17 seqs=2 chr2:35336141-35336754 ( 329) TGCAGAAGAGGCGCCTC 1 chr18:78122914-78123561 ( 420) TGCAGAAGAGGCGCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 17 n= 21386 bayes= 13.3842 E= 9.6e+004 -765 -765 -765 198 -765 -765 202 -765 -765 202 -765 -765 196 -765 -765 -765 -765 -765 202 -765 196 -765 -765 -765 196 -765 -765 -765 -765 -765 202 -765 196 -765 -765 -765 -765 -765 202 -765 -765 -765 202 -765 -765 202 -765 -765 -765 -765 202 -765 -765 202 -765 -765 -765 202 -765 -765 -765 -765 -765 198 -765 202 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 17 nsites= 2 E= 9.6e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- TGCAGAAGAGGCGCCTC -------------------------------------------------------------------------------- Time 149.48 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 24 sites = 2 llr = 61 E-value = 1.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A :::::a::a:::::a::::::::: pos.-specific C ::a::::::::a:5::55a::::: probability G aa::5:aa:a:::5:a::::aaa: matrix T :::a5:::::a:a:::55:a:::a bits 2.0 **** ******** ** ****** 1.8 **** ******** ** ****** 1.6 **** ******** ** ****** 1.4 **** ******** ** ****** Relative 1.2 **** ******** ** ****** Entropy 1.0 ************************ (44.2 bits) 0.8 ************************ 0.6 ************************ 0.4 ************************ 0.2 ************************ 0.0 ------------------------ Multilevel GGCTGAGGAGTCTCAGCCCTGGGT consensus T G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr7:81371254-81372103 777 2.43e-14 TGCTGCTCTG GGCTGAGGAGTCTGAGTCCTGGGT GCTCCAGGGT chr7:103827722-103828271 363 4.33e-14 GCCACTCACT GGCTTAGGAGTCTCAGCTCTGGGT ACTCCCTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:81371254-81372103 2.4e-14 776_[+8]_49 chr7:103827722-103828271 4.3e-14 362_[+8]_163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=24 seqs=2 chr7:81371254-81372103 ( 777) GGCTGAGGAGTCTGAGTCCTGGGT 1 chr7:103827722-103828271 ( 363) GGCTTAGGAGTCTCAGCTCTGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 21134 bayes= 13.3671 E= 1.8e+005 -765 -765 202 -765 -765 -765 202 -765 -765 202 -765 -765 -765 -765 -765 198 -765 -765 103 98 196 -765 -765 -765 -765 -765 202 -765 -765 -765 202 -765 196 -765 -765 -765 -765 -765 202 -765 -765 -765 -765 198 -765 202 -765 -765 -765 -765 -765 198 -765 102 103 -765 196 -765 -765 -765 -765 -765 202 -765 -765 102 -765 98 -765 102 -765 98 -765 202 -765 -765 -765 -765 -765 198 -765 -765 202 -765 -765 -765 202 -765 -765 -765 202 -765 -765 -765 -765 198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 2 E= 1.8e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- GGCT[GT]AGGAGTCT[CG]AG[CT][CT]CTGGGT -------------------------------------------------------------------------------- Time 170.01 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 15 sites = 2 llr = 39 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A ::::::55::::::: pos.-specific C aaa:aa55a:aa::: probability G :::a:::::a::aaa matrix T ::::::::::::::: bits 2.0 ****** ******* 1.8 ****** ******* 1.6 ****** ******* 1.4 ****** ******* Relative 1.2 ****** ******* Entropy 1.0 *************** (28.4 bits) 0.8 *************** 0.6 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CCCGCCAACGCCGGG consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr7:81828352-81828901 448 2.13e-09 CGGCAAAGCG CCCGCCACCGCCGGG AATGGCGACA chr1:133824980-133826344 751 2.13e-09 TGCATTAAAG CCCGCCCACGCCGGG ACATGCTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:81828352-81828901 2.1e-09 447_[+9]_87 chr1:133824980-133826344 2.1e-09 750_[+9]_599 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=15 seqs=2 chr7:81828352-81828901 ( 448) CCCGCCACCGCCGGG 1 chr1:133824980-133826344 ( 751) CCCGCCCACGCCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 21458 bayes= 13.3891 E= 1.9e+005 -765 202 -765 -765 -765 202 -765 -765 -765 202 -765 -765 -765 -765 202 -765 -765 202 -765 -765 -765 202 -765 -765 96 102 -765 -765 96 102 -765 -765 -765 202 -765 -765 -765 -765 202 -765 -765 202 -765 -765 -765 202 -765 -765 -765 -765 202 -765 -765 -765 202 -765 -765 -765 202 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 2 E= 1.9e+005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- CCCGCC[AC][AC]CGCCGGG -------------------------------------------------------------------------------- Time 190.65 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 11 sites = 9 llr = 109 E-value = 2.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :38a:a:::1: pos.-specific C a62:a::8a2: probability G :1::::a:::9 matrix T :::::::2:71 bits 2.0 * **** * 1.8 * **** * 1.6 * **** * 1.4 * **** * * Relative 1.2 * ******* * Entropy 1.0 * ******* * (17.4 bits) 0.8 * ********* 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CCAACAGCCTG consensus AC T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr7:100684517-100685216 487 2.28e-07 GTGGTTCTGA CCAACAGCCTG TTGCTCATAA chr16:17637870-17638971 696 2.28e-07 CATGCCTTTG CCAACAGCCTG AAGCCAGATC chr6:38850036-38850365 30 1.14e-06 TCTGCTCAAC CCAACAGTCTG GCTTTTGACT chr8:122306654-122307303 219 1.60e-06 GGATCTGGGA CAAACAGCCCG GCCTGCACCT chr7:103909977-103910526 296 1.60e-06 GGCTCAATCG CAAACAGCCCG TTGCTTTAAG chr7:126396697-126397346 97 1.60e-06 TTTCATTGGA CGAACAGCCTG CCGGTCATCA chr7:81371254-81372103 154 3.22e-06 TTACCTTGAA CAAACAGCCAG CCTCTCTCTG chr18:78122914-78123561 448 3.44e-06 CCCTTTTATA CCCACAGTCTG CTCTTCAGGT chr7:126348074-126348673 173 5.96e-06 AGAACAATTC CCCACAGCCTT TTCATGACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:100684517-100685216 2.3e-07 486_[+10]_202 chr16:17637870-17638971 2.3e-07 695_[+10]_395 chr6:38850036-38850365 1.1e-06 29_[+10]_289 chr8:122306654-122307303 1.6e-06 218_[+10]_420 chr7:103909977-103910526 1.6e-06 295_[+10]_243 chr7:126396697-126397346 1.6e-06 96_[+10]_542 chr7:81371254-81372103 3.2e-06 153_[+10]_685 chr18:78122914-78123561 3.4e-06 447_[+10]_189 chr7:126348074-126348673 6e-06 172_[+10]_416 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=11 seqs=9 chr7:100684517-100685216 ( 487) CCAACAGCCTG 1 chr16:17637870-17638971 ( 696) CCAACAGCCTG 1 chr6:38850036-38850365 ( 30) CCAACAGTCTG 1 chr8:122306654-122307303 ( 219) CAAACAGCCCG 1 chr7:103909977-103910526 ( 296) CAAACAGCCCG 1 chr7:126396697-126397346 ( 97) CGAACAGCCTG 1 chr7:81371254-81372103 ( 154) CAAACAGCCAG 1 chr18:78122914-78123561 ( 448) CCCACAGTCTG 1 chr7:126348074-126348673 ( 173) CCCACAGCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 21602 bayes= 12.0766 E= 2.1e+005 -982 203 -982 -982 38 118 -114 -982 160 -14 -982 -982 196 -982 -982 -982 -982 203 -982 -982 196 -982 -982 -982 -982 -982 203 -982 -982 166 -982 -19 -982 203 -982 -982 -121 -14 -982 140 -982 -982 186 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 9 E= 2.1e+005 0.000000 1.000000 0.000000 0.000000 0.333333 0.555556 0.111111 0.000000 0.777778 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.222222 0.000000 1.000000 0.000000 0.000000 0.111111 0.222222 0.000000 0.666667 0.000000 0.000000 0.888889 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- C[CA][AC]ACAG[CT]C[TC]G -------------------------------------------------------------------------------- Time 211.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:96918169-96918442 5.38e-02 64_[+1(1.09e-05)]_194 chr11:121433123-12143395 2.01e-01 108_[+1(3.79e-05)]_712 chr11:78065987-78066220 1.07e-05 12_[+2(1.92e-05)]_125_[+1(5.56e-05)]_2_[+3(9.65e-07)]_53 chr11:96940896-96941567 3.91e-02 400_[+4(8.25e-05)]_263 chr16:17637870-17638971 2.86e-07 129_[+2(3.38e-06)]_62_[+3(3.91e-07)]_149_[+1(6.67e-05)]_81_[+9(5.65e-05)]_218_[+10(2.28e-07)]_37_[+10(8.97e-05)]_347 chr17:4625931-4626888 2.87e-03 2_[+3(5.16e-07)]_650_[+1(2.78e-05)]_55_[+10(8.32e-05)]_188_[+2(4.76e-05)]_10 chr18:78122914-78123561 6.64e-09 70_[+4(4.84e-05)]_284_[+4(6.55e-05)]_49_[+7(5.33e-11)]_11_[+10(3.44e-06)]_9_[+1(7.29e-05)]_66_[+2(2.56e-05)]_88 chr1:133824980-133826344 2.66e-16 212_[+1(7.29e-05)]_36_[+8(5.13e-05)]_17_[+1(6.29e-06)]_91_[+3(1.70e-07)]_180_[+4(1.62e-05)]_93_[+5(1.81e-14)]_19_[+9(2.13e-09)]_37_[+4(6.55e-05)]_44_[+3(5.25e-05)]_444_[+8(6.11e-05)]_27 chr1:155039094-155039712 1.00e-05 26_[+5(4.82e-05)]_225_[+3(7.45e-05)]_55_[+4(9.87e-05)]_85_[+1(3.09e-05)]_11_[+3(1.45e-07)]_25_[+2(2.56e-05)]_102 chr2:27393823-27394052 6.45e-02 188_[+2(3.44e-05)]_30 chr2:35336141-35336754 1.66e-10 182_[+3(9.65e-07)]_94_[+4(4.84e-05)]_29_[+7(5.33e-11)]_25_[+2(4.76e-05)]_101_[+9(1.26e-05)]_28_[+1(1.99e-05)]_73 chr3:21995865-21996344 4.13e-02 183_[+4(1.62e-05)]_204_[+1(2.78e-05)]_69 chr5:147441844-147442420 4.33e-04 38_[+8(1.96e-05)]_296_[+1(2.64e-09)]_179_[+1(6.67e-05)]_9 chr6:38874491-38874649 6.42e-02 108_[+4(1.62e-05)]_42 chr6:88190548-88191087 2.80e-03 94_[+9(8.11e-05)]_142_[+4(9.87e-05)]_36_[+2(1.29e-05)]_155_[+6(9.38e-05)]_57 chr6:38850036-38850365 1.97e-03 2_[+2(7.65e-05)]_16_[+10(1.14e-06)]_249_[+1(7.95e-05)]_25 chr7:126126469-126127018 5.47e-05 152_[+4(1.62e-05)]_88_[+2(7.65e-05)]_76_[+3(8.24e-08)]_173_[+1(2.24e-05)]_11 chr7:100684517-100685216 4.19e-11 51_[+6(2.59e-12)]_414_[+10(2.28e-07)]_31_[+3(8.94e-05)]_137_[+1(1.69e-06)]_4 chr7:128672194-128672743 4.23e-03 286_[+2(1.92e-05)]_142_[+1(9.52e-06)]_95 chr7:126396697-126397346 3.80e-04 39_[+2(5.65e-05)]_46_[+10(1.60e-06)]_184_[+2(3.44e-05)]_119_[+8(8.83e-05)]_19_[+1(6.10e-05)]_170 chr7:83898159-83898858 7.40e-02 150_[+1(4.18e-05)]_5_[+2(2.95e-05)]_26_[+4(3.19e-05)]_484 chr7:81828352-81828901 8.65e-05 178_[+1(7.29e-05)]_254_[+9(2.13e-09)]_87 chr7:80629225-80629924 2.42e-10 400_[+2(2.10e-06)]_30_[+5(1.09e-14)]_50_[+1(1.78e-05)]_168 chr7:83695530-83696479 6.14e-01 65_[+1(7.29e-05)]_869 chr7:65300367-65300916 6.52e-04 6_[+3(1.15e-06)]_366_[+1(5.07e-05)]_120_[+2(7.65e-05)]_16 chr7:103909977-103910526 1.85e-03 142_[+1(9.41e-05)]_138_[+10(1.60e-06)]_125_[+6(8.40e-05)]_67_[+4(6.55e-05)]_22 chr7:103827722-103828271 1.08e-07 249_[+2(3.77e-05)]_102_[+8(4.33e-14)]_163 chr7:81371254-81372103 2.65e-11 153_[+10(3.22e-06)]_20_[+5(9.88e-05)]_240_[+8(6.11e-05)]_78_[+4(4.84e-05)]_217_[+8(2.43e-14)]_27_[+1(4.18e-05)]_7 chr7:66079190-66079989 1.78e-08 207_[+1(3.09e-05)]_102_[+9(5.65e-05)]_11_[+2(5.65e-05)]_149_[+6(9.66e-06)]_77_[+6(8.29e-13)]_170 chr7:90129166-90129715 2.06e-01 219_[+2(6.18e-05)]_319 chr7:126348074-126348673 1.93e-03 134_[+2(7.65e-05)]_27_[+10(5.96e-06)]_277_[+4(8.25e-05)]_131 chr8:122306654-122307303 8.08e-10 129_[+2(6.84e-05)]_78_[+10(1.60e-06)]_77_[+6(5.21e-05)]_242_[+3(2.41e-09)]_16_[+1(2.88e-06)]_34 chr8:122309300-122309476 2.02e-03 176 chr8:122329039-122329288 1.26e-05 34_[+4(6.55e-05)]_91_[+1(3.99e-06)]_27_[+3(8.63e-07)]_59 chr9:110668412-110669188 2.39e-01 271_[+1(6.67e-05)]_490 chr9:96241257-96241962 5.63e-05 14_[+3(4.52e-07)]_186_[+6(8.40e-05)]_11_[+1(8.33e-06)]_119_[+9(5.65e-05)]_309 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************