******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= GATATopEnh.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:32050062-32050577 1.0000 515 chr13:14542586-14543495 1.0000 909 chr14:118194550-11819505 1.0000 508 chr15:66825958-66826701 1.0000 743 chr18:38494822-38495283 1.0000 461 chr18:32542067-32543176 1.0000 1109 chr1:130299952-130300620 1.0000 668 chr1:134092945-134093215 1.0000 270 chr3:146405565-146406311 1.0000 746 chr6:88116825-88117394 1.0000 569 chr6:88202909-88203453 1.0000 544 chr7:103860632-103861603 1.0000 971 chr7:97209921-97210520 1.0000 599 chr7:16294673-16295504 1.0000 831 chr7:111004084-111004633 1.0000 549 chr7:103860766-103861493 1.0000 727 chr8:122313263-122313662 1.0000 399 chr9:123957650-123958639 1.0000 989 chrX:7840921-7841535 1.0000 614 chrX:7971363-7971747 1.0000 384 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme GATATopEnh.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o GATATopEnh.bed.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 20 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 13105 N= 20 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.262 C 0.235 G 0.239 T 0.264 Background letter frequencies (from dataset with add-one prior applied): A 0.262 C 0.235 G 0.239 T 0.264 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 21 sites = 20 llr = 230 E-value = 5.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 41::5:71231211:223223 pos.-specific C :48a:7::22131:113:3:1 probability G 76:::2177535699365476 matrix T ::215223:1613::4:2221 bits 2.1 1.9 * 1.7 * ** 1.5 * ** Relative 1.3 ** ** Entropy 1.0 * ** ** (16.6 bits) 0.8 ********* ** * 0.6 ********* *** * ** 0.4 ********* ***** ** ** 0.2 ********************* 0.0 --------------------- Multilevel GGCCACAGGGTGGGGTGGGGG consensus ACT T TTCAGCT GCACAA sequence C A A TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr8:122313263-122313662 62 1.98e-09 CTGCTGCTAG GGCCACAGGAGGTGGTGGTGG CCATTTCCTG chr7:103860766-103861493 380 5.38e-09 GGCTGAACAC ACCCACAGGGTGGGGAGTGGA GAACTGACTC chr7:103860632-103861603 514 5.38e-09 GGCTGAACAC ACCCACAGGGTGGGGAGTGGA GAACTGACTC chr7:16294673-16295504 498 5.37e-08 CAGAACCCTG GGCCTGAGGGGAGGGTCGAGG ACAAAGTGGG chr15:66825958-66826701 529 7.88e-08 CTGCTTGCTT GGCCTCAGGCTCTGGTCACAG GTCCCTCTAA chr1:130299952-130300620 169 1.83e-07 AAGCAGCAGG GGCCATAGAGTGGGGGATGGG TTCTGAGCCG chr18:38494822-38495283 253 4.00e-07 ACACTGCAGA GCCCTCAGGGCAGAGTGAGGA CTTTGCCCTG chr18:32542067-32543176 64 4.45e-07 AGTCTAACTG GCCCTCTAGGAGGGGGGAGGG GCCAGCCAAC chr6:88116825-88117394 108 4.94e-07 CTCTGCCTGG GGCCTCATGGTCAGGTGGCGC TTATCAGGGC chr7:111004084-111004633 177 1.76e-06 ATGTGCCCCC AGTCACTTCCTGGGGGAGGGG GTGTTCTAGC chr7:97209921-97210520 293 1.76e-06 CTACAGCTTT AGCCACAGAATCTGGAGAAAG ATGATTGGAG chrX:7971363-7971747 179 3.26e-06 GCTTGGGGGA GCCCATTGCAGGCGGGGGTGG GGTGTCCGGG chr1:134092945-134093215 237 4.18e-06 GACGCGCGGC GGCCACGTCAGCGGCGCGGGG GAGGTGTACG chr6:88202909-88203453 19 5.33e-06 CTAGCAGCCC ACCCTCAGGCTCTGGTCTCTT ATTCGCTCTT chr13:14542586-14543495 841 9.80e-06 GGTCTTTGGG GGTCTCATGATCCGGTCATAA CACTACACCA chr14:118194550-11819505 308 1.05e-05 TGACATTACA GCTCTCAGCTTAGGCTGGCGT GCTGCGAGGC chr3:146405565-146406311 697 1.13e-05 CTTAGCATTC AGCTAGAGAGAGGGGGGGGAG AGAGCGCCTA chrX:7840921-7841535 399 2.53e-05 AGTAGGACCC ACCCTCTTGGGTTGGCGGATG GGAGGAACAG chr9:123957650-123958639 378 6.04e-05 TATCTCTCTT GGCCATATGTCAGGGCAGCTA TTGACTAATG chr12:32050062-32050577 122 6.04e-05 AGAAATCAAA GATCTGGGGCTGGAGAGATGG CTTAACTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:122313263-122313662 2e-09 61_[+1]_317 chr7:103860766-103861493 5.4e-09 379_[+1]_327 chr7:103860632-103861603 5.4e-09 513_[+1]_437 chr7:16294673-16295504 5.4e-08 497_[+1]_313 chr15:66825958-66826701 7.9e-08 528_[+1]_194 chr1:130299952-130300620 1.8e-07 168_[+1]_479 chr18:38494822-38495283 4e-07 252_[+1]_188 chr18:32542067-32543176 4.4e-07 63_[+1]_1025 chr6:88116825-88117394 4.9e-07 107_[+1]_441 chr7:111004084-111004633 1.8e-06 176_[+1]_352 chr7:97209921-97210520 1.8e-06 292_[+1]_286 chrX:7971363-7971747 3.3e-06 178_[+1]_185 chr1:134092945-134093215 4.2e-06 236_[+1]_13 chr6:88202909-88203453 5.3e-06 18_[+1]_505 chr13:14542586-14543495 9.8e-06 840_[+1]_48 chr14:118194550-11819505 1.1e-05 307_[+1]_180 chr3:146405565-146406311 1.1e-05 696_[+1]_29 chrX:7840921-7841535 2.5e-05 398_[+1]_195 chr9:123957650-123958639 6e-05 377_[+1]_591 chr12:32050062-32050577 6e-05 121_[+1]_373 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=20 chr8:122313263-122313662 ( 62) GGCCACAGGAGGTGGTGGTGG 1 chr7:103860766-103861493 ( 380) ACCCACAGGGTGGGGAGTGGA 1 chr7:103860632-103861603 ( 514) ACCCACAGGGTGGGGAGTGGA 1 chr7:16294673-16295504 ( 498) GGCCTGAGGGGAGGGTCGAGG 1 chr15:66825958-66826701 ( 529) GGCCTCAGGCTCTGGTCACAG 1 chr1:130299952-130300620 ( 169) GGCCATAGAGTGGGGGATGGG 1 chr18:38494822-38495283 ( 253) GCCCTCAGGGCAGAGTGAGGA 1 chr18:32542067-32543176 ( 64) GCCCTCTAGGAGGGGGGAGGG 1 chr6:88116825-88117394 ( 108) GGCCTCATGGTCAGGTGGCGC 1 chr7:111004084-111004633 ( 177) AGTCACTTCCTGGGGGAGGGG 1 chr7:97209921-97210520 ( 293) AGCCACAGAATCTGGAGAAAG 1 chrX:7971363-7971747 ( 179) GCCCATTGCAGGCGGGGGTGG 1 chr1:134092945-134093215 ( 237) GGCCACGTCAGCGGCGCGGGG 1 chr6:88202909-88203453 ( 19) ACCCTCAGGCTCTGGTCTCTT 1 chr13:14542586-14543495 ( 841) GGTCTCATGATCCGGTCATAA 1 chr14:118194550-11819505 ( 308) GCTCTCAGCTTAGGCTGGCGT 1 chr3:146405565-146406311 ( 697) AGCTAGAGAGAGGGGGGGGAG 1 chrX:7840921-7841535 ( 399) ACCCTCTTGGGTTGGCGGATG 1 chr9:123957650-123958639 ( 378) GGCCATATGTCAGGGCAGCTA 1 chr12:32050062-32050577 ( 122) GATCTGGGGCTGGAGAGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12705 bayes= 9.56081 E= 5.7e-005 42 -1097 144 -1097 -239 76 120 -1097 -1097 176 -1097 -40 -1097 201 -1097 -240 93 -1097 -1097 92 -1097 157 -67 -81 142 -1097 -126 -40 -239 -1097 144 19 -80 -24 144 -1097 -7 -24 91 -140 -139 -123 6 106 -39 35 91 -240 -239 -123 133 -8 -139 -1097 191 -1097 -1097 -123 191 -1097 -39 -123 33 60 -80 9 133 -1097 20 -1097 106 -40 -80 9 74 -40 -39 -1097 144 -81 -7 -223 133 -140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 20 E= 5.7e-005 0.350000 0.000000 0.650000 0.000000 0.050000 0.400000 0.550000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.950000 0.000000 0.050000 0.500000 0.000000 0.000000 0.500000 0.000000 0.700000 0.150000 0.150000 0.700000 0.000000 0.100000 0.200000 0.050000 0.000000 0.650000 0.300000 0.150000 0.200000 0.650000 0.000000 0.250000 0.200000 0.450000 0.100000 0.100000 0.100000 0.250000 0.550000 0.200000 0.300000 0.450000 0.050000 0.050000 0.100000 0.600000 0.250000 0.100000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.200000 0.100000 0.300000 0.400000 0.150000 0.250000 0.600000 0.000000 0.300000 0.000000 0.500000 0.200000 0.150000 0.250000 0.400000 0.200000 0.200000 0.000000 0.650000 0.150000 0.250000 0.050000 0.600000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GA][GC][CT]C[AT]C[AT][GT][GC][GAC][TG][GCA][GT]GG[TGA][GC][GAT][GCT][GA][GA] -------------------------------------------------------------------------------- Time 8.80 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 24 sites = 6 llr = 133 E-value = 8.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :33:2:3::::::::::::::a:2 pos.-specific C :278:37a2aa35a2322888::8 probability G a2::57:::::52:2787222:a: matrix T :3:23:::8::23:7::2:::::: bits 2.1 * * ** * * 1.9 * * ** * ** 1.7 * * ** * ** 1.5 * * * ** * * ****** Relative 1.3 * * * **** * ** ****** Entropy 1.0 * ** ****** * ** ****** (32.1 bits) 0.8 * ** ****** * ********* 0.6 * ********************** 0.4 * ********************** 0.2 * ********************** 0.0 ------------------------ Multilevel GACCGGCCTCCGCCTGGGCCCAGC consensus TA TCA CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr7:103860766-103861493 401 4.79e-13 GGGGAGTGGA GAACTGACTCCGCCTGGGCCCAGC TAACCTCCTC chr7:103860632-103861603 535 4.79e-13 GGGGAGTGGA GAACTGACTCCGCCTGGGCCCAGC TAACCTCCTC chr7:16294673-16295504 395 7.24e-12 CCACGGGGCG GCCCGGCCTCCGCCTGGCCCGAGC GATAACGCTC chr6:88202909-88203453 93 2.83e-10 TGGCTGCTCT GGCCGCCCTCCCTCGCCTCCCAGC TCCCGGTCTC chr18:38494822-38495283 88 3.17e-10 CCGGGTCACC GTCCACCCTCCTGCTGGGGGCAGC AGCAGGCTTC chr1:134092945-134093215 26 3.91e-10 TGGGAAGGCT GTCTGGCCCCCCTCCCGGCCCAGA GGTGACACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 4.8e-13 400_[+2]_303 chr7:103860632-103861603 4.8e-13 534_[+2]_413 chr7:16294673-16295504 7.2e-12 394_[+2]_413 chr6:88202909-88203453 2.8e-10 92_[+2]_428 chr18:38494822-38495283 3.2e-10 87_[+2]_350 chr1:134092945-134093215 3.9e-10 25_[+2]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=24 seqs=6 chr7:103860766-103861493 ( 401) GAACTGACTCCGCCTGGGCCCAGC 1 chr7:103860632-103861603 ( 535) GAACTGACTCCGCCTGGGCCCAGC 1 chr7:16294673-16295504 ( 395) GCCCGGCCTCCGCCTGGCCCGAGC 1 chr6:88202909-88203453 ( 93) GGCCGCCCTCCCTCGCCTCCCAGC 1 chr18:38494822-38495283 ( 88) GTCCACCCTCCTGCTGGGGGCAGC 1 chr1:134092945-134093215 ( 26) GTCTGGCCCCCCTCCCGGCCCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 12645 bayes= 11.4883 E= 8.6e-005 -923 -923 206 -923 35 -50 -52 34 35 150 -923 -923 -923 182 -923 -66 -65 -923 106 34 -923 50 148 -923 35 150 -923 -923 -923 208 -923 -923 -923 -50 -923 166 -923 208 -923 -923 -923 208 -923 -923 -923 50 106 -66 -923 109 -52 34 -923 208 -923 -923 -923 -50 -52 134 -923 50 148 -923 -923 -50 180 -923 -923 -50 148 -66 -923 182 -52 -923 -923 182 -52 -923 -923 182 -52 -923 193 -923 -923 -923 -923 -923 206 -923 -65 182 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 6 E= 8.6e-005 0.000000 0.000000 1.000000 0.000000 0.333333 0.166667 0.166667 0.333333 0.333333 0.666667 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.166667 0.000000 0.500000 0.333333 0.000000 0.333333 0.666667 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.500000 0.166667 0.000000 0.500000 0.166667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.333333 0.666667 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.666667 0.166667 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[AT][CA]C[GT][GC][CA]CTCC[GC][CT]CT[GC]GGCCCAGC -------------------------------------------------------------------------------- Time 17.31 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 25 sites = 10 llr = 178 E-value = 1.3e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 9:32a17281:71::5:1921:95a pos.-specific C 1648:3311:71612:271::7:5: probability G :42::6:::73:337:1::433::: matrix T ::1::::712:2:61572:46:1:: bits 2.1 1.9 * * 1.7 * * 1.5 * * * * * Relative 1.3 * ** * * ** * Entropy 1.0 ** ** * * * * **** (25.7 bits) 0.8 ** ********** ***** **** 0.6 ** **************** ***** 0.4 ** ********************** 0.2 ************************* 0.0 ------------------------- Multilevel ACCCAGATAGCACTGATCAGTCAAA consensus GAA CCA TGTGGCTCT TGG C sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:103860766-103861493 256 1.72e-15 CCTCCTAGAG ACCCAGATAGCACTGATCAGTCACA GCTGAAAACA chr7:103860632-103861603 390 1.72e-15 CCTCCTAGAG ACCCAGATAGCACTGATCAGTCACA GCTGAAAACA chr6:88116825-88117394 532 2.19e-09 GCCCCCTCCC ACCAACCTAGCAGGGATCAGGCTCA GGGTGGGGCT chr18:32542067-32543176 29 3.65e-09 GTGTGCATGC ACACACATATGAAGGTTCAATGAAA AGTCTAACTG chr13:14542586-14543495 453 3.96e-09 GGCTCCTGGG AGTCACATAGCACTGTTCCTAGAAA TACCACAAAG chrX:7840921-7841535 540 6.88e-09 GTATATAGTA AGACAGACCGCTCTGTTTATGCACA GTGCCGACGC chr7:16294673-16295504 675 1.15e-08 GACGTTGGAG AGACAGAAAGCAGGTTCAAGTCAAA ACAGATGGAA chr3:146405565-146406311 138 1.15e-08 CTGTGGGCCC ACGAAGCTTAGAGTGTTCATTCAAA CTAAACAAGA chr12:32050062-32050577 390 6.58e-08 CAGGAAGAAA CGGCAGCAAGCTCTCACTATGCACA AAGGTTTTCC chr9:123957650-123958639 814 1.68e-07 TAAATCTCCA ACCCAAATATGCCCCAGCAATGAAA ACATGACTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 1.7e-15 255_[+3]_447 chr7:103860632-103861603 1.7e-15 389_[+3]_557 chr6:88116825-88117394 2.2e-09 531_[+3]_13 chr18:32542067-32543176 3.6e-09 28_[+3]_1056 chr13:14542586-14543495 4e-09 452_[+3]_432 chrX:7840921-7841535 6.9e-09 539_[+3]_50 chr7:16294673-16295504 1.2e-08 674_[+3]_132 chr3:146405565-146406311 1.2e-08 137_[+3]_584 chr12:32050062-32050577 6.6e-08 389_[+3]_101 chr9:123957650-123958639 1.7e-07 813_[+3]_151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=25 seqs=10 chr7:103860766-103861493 ( 256) ACCCAGATAGCACTGATCAGTCACA 1 chr7:103860632-103861603 ( 390) ACCCAGATAGCACTGATCAGTCACA 1 chr6:88116825-88117394 ( 532) ACCAACCTAGCAGGGATCAGGCTCA 1 chr18:32542067-32543176 ( 29) ACACACATATGAAGGTTCAATGAAA 1 chr13:14542586-14543495 ( 453) AGTCACATAGCACTGTTCCTAGAAA 1 chrX:7840921-7841535 ( 540) AGACAGACCGCTCTGTTTATGCACA 1 chr7:16294673-16295504 ( 675) AGACAGAAAGCAGGTTCAAGTCAAA 1 chr3:146405565-146406311 ( 138) ACGAAGCTTAGAGTGTTCATTCAAA 1 chr12:32050062-32050577 ( 390) CGGCAGCAAGCTCTCACTATGCACA 1 chr9:123957650-123958639 ( 814) ACCCAAATATGCCCCAGCAATGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 12625 bayes= 10.5526 E= 1.3e-002 178 -123 -997 -997 -997 135 74 -997 20 76 -26 -140 -39 176 -997 -997 193 -997 -997 -997 -139 35 133 -997 142 35 -997 -997 -39 -123 -997 141 161 -123 -997 -140 -139 -997 155 -40 -997 157 33 -997 142 -123 -997 -40 -139 135 33 -997 -997 -123 33 119 -997 -24 155 -140 93 -997 -997 92 -997 -24 -126 141 -139 157 -997 -40 178 -123 -997 -997 -39 -997 74 60 -139 -997 33 119 -997 157 33 -997 178 -997 -997 -140 93 109 -997 -997 193 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 10 E= 1.3e-002 0.900000 0.100000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.300000 0.400000 0.200000 0.100000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.300000 0.600000 0.000000 0.700000 0.300000 0.000000 0.000000 0.200000 0.100000 0.000000 0.700000 0.800000 0.100000 0.000000 0.100000 0.100000 0.000000 0.700000 0.200000 0.000000 0.700000 0.300000 0.000000 0.700000 0.100000 0.000000 0.200000 0.100000 0.600000 0.300000 0.000000 0.000000 0.100000 0.300000 0.600000 0.000000 0.200000 0.700000 0.100000 0.500000 0.000000 0.000000 0.500000 0.000000 0.200000 0.100000 0.700000 0.100000 0.700000 0.000000 0.200000 0.900000 0.100000 0.000000 0.000000 0.200000 0.000000 0.400000 0.400000 0.100000 0.000000 0.300000 0.600000 0.000000 0.700000 0.300000 0.000000 0.900000 0.000000 0.000000 0.100000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- A[CG][CAG][CA]A[GC][AC][TA]A[GT][CG][AT][CG][TG][GC][AT][TC][CT]A[GTA][TG][CG]A[AC]A -------------------------------------------------------------------------------- Time 25.91 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 15 sites = 20 llr = 196 E-value = 4.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 523661:1:2:::3: pos.-specific C ::4431:91221917 probability G 663123a:1619212 matrix T :3:::7119281:61 bits 2.1 1.9 1.7 * 1.5 *** * Relative 1.3 *** ** Entropy 1.0 * *** *** (14.1 bits) 0.8 * *** *** * 0.6 ** ****** *** * 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GGCAATGCTGTGCTC consensus ATACCG AG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr7:103860766-103861493 334 1.05e-08 AGCATGACTC AGCACTGCTGTGCTC AAGCTAGATG chr7:103860632-103861603 468 1.05e-08 AGCATGACTC AGCACTGCTGTGCTC AAGCTAGATG chr18:38494822-38495283 166 1.63e-07 CAGGCATGGA GGCCCTGCTCTGCTC TGAGATAAGG chr9:123957650-123958639 859 3.75e-07 ATTAATATGA ATACATGCTGTGCAC CTAGATTGGG chr3:146405565-146406311 170 9.22e-07 AAACTAAACA AGAAAAGCTGTGCTC CCAGTCGACA chr1:130299952-130300620 495 3.47e-06 TTCCTTCGGT AGCAGTGCTGTTCAC TGCTGTTCAG chrX:7840921-7841535 444 3.81e-06 TGACGCCAGA GGGGACGCTGTGCTC TGGGAATGTT chr6:88116825-88117394 382 4.68e-06 CAAACTATCT ATCACTGCTGTGCGG TGGGCAGAAC chr13:14542586-14543495 9 6.86e-06 GCCCAAAG GAAAATGATGTGCTC CTGTTTGTTT chr18:32542067-32543176 327 1.28e-05 ATATGTCCCT AAGCATGCTCTGCAG CAAGGCTATT chr1:134092945-134093215 127 1.64e-05 ACAGGAGGGC GGGGCTGCTGCGCAG GGCGGCTACG chr8:122313263-122313662 307 1.78e-05 GCCGATAGCT GGCCATGCTCCCCTC CCCACAACCG chr7:16294673-16295504 789 2.87e-05 TGCTGAGGCA GGACAGGCTATGGGC GCGGTGGGGA chr14:118194550-11819505 43 3.34e-05 CCCTCTCTCC AGGAATTTTGTGCTC AGTGTTCTTC chr12:32050062-32050577 150 4.47e-05 TGGCTTAACT GTCAAGGCTACTCTC ACAACAAAAG chr7:97209921-97210520 265 5.15e-05 CTCTTTTCCA AGAAATGCCTTGCCC CTTCTACAGC chr15:66825958-66826701 419 5.53e-05 AGAGATGTTG GAAAGGGCTTTGGTC ATCAGGCTAT chrX:7971363-7971747 158 5.93e-05 AATCAGCGGG GGCCAGGCTAGGCTT GGGGGAGCCC chr7:111004084-111004633 382 1.01e-04 TCCAGTGTGT GTGCCTGCTTTGGAT GGGCATGAGT chr6:88202909-88203453 529 1.01e-04 ACCCAGCAGT GTGAGGGCGGTGCAG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 1e-08 333_[+4]_379 chr7:103860632-103861603 1e-08 467_[+4]_489 chr18:38494822-38495283 1.6e-07 165_[+4]_281 chr9:123957650-123958639 3.8e-07 858_[+4]_116 chr3:146405565-146406311 9.2e-07 169_[+4]_562 chr1:130299952-130300620 3.5e-06 494_[+4]_159 chrX:7840921-7841535 3.8e-06 443_[+4]_156 chr6:88116825-88117394 4.7e-06 381_[+4]_173 chr13:14542586-14543495 6.9e-06 8_[+4]_886 chr18:32542067-32543176 1.3e-05 326_[+4]_768 chr1:134092945-134093215 1.6e-05 126_[+4]_129 chr8:122313263-122313662 1.8e-05 306_[+4]_78 chr7:16294673-16295504 2.9e-05 788_[+4]_28 chr14:118194550-11819505 3.3e-05 42_[+4]_451 chr12:32050062-32050577 4.5e-05 149_[+4]_351 chr7:97209921-97210520 5.2e-05 264_[+4]_320 chr15:66825958-66826701 5.5e-05 418_[+4]_310 chrX:7971363-7971747 5.9e-05 157_[+4]_212 chr7:111004084-111004633 0.0001 381_[+4]_153 chr6:88202909-88203453 0.0001 528_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=15 seqs=20 chr7:103860766-103861493 ( 334) AGCACTGCTGTGCTC 1 chr7:103860632-103861603 ( 468) AGCACTGCTGTGCTC 1 chr18:38494822-38495283 ( 166) GGCCCTGCTCTGCTC 1 chr9:123957650-123958639 ( 859) ATACATGCTGTGCAC 1 chr3:146405565-146406311 ( 170) AGAAAAGCTGTGCTC 1 chr1:130299952-130300620 ( 495) AGCAGTGCTGTTCAC 1 chrX:7840921-7841535 ( 444) GGGGACGCTGTGCTC 1 chr6:88116825-88117394 ( 382) ATCACTGCTGTGCGG 1 chr13:14542586-14543495 ( 9) GAAAATGATGTGCTC 1 chr18:32542067-32543176 ( 327) AAGCATGCTCTGCAG 1 chr1:134092945-134093215 ( 127) GGGGCTGCTGCGCAG 1 chr8:122313263-122313662 ( 307) GGCCATGCTCCCCTC 1 chr7:16294673-16295504 ( 789) GGACAGGCTATGGGC 1 chr14:118194550-11819505 ( 43) AGGAATTTTGTGCTC 1 chr12:32050062-32050577 ( 150) GTCAAGGCTACTCTC 1 chr7:97209921-97210520 ( 265) AGAAATGCCTTGCCC 1 chr15:66825958-66826701 ( 419) GAAAGGGCTTTGGTC 1 chrX:7971363-7971747 ( 158) GGCCAGGCTAGGCTT 1 chr7:111004084-111004633 ( 382) GTGCCTGCTTTGGAT 1 chr6:88202909-88203453 ( 529) GTGAGGGCGGTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 12825 bayes= 9.57439 E= 4.7e-001 78 -1097 120 -1097 -80 -1097 133 -8 20 76 33 -1097 107 57 -126 -1097 107 35 -67 -1097 -239 -223 6 130 -1097 -1097 199 -240 -239 193 -1097 -240 -1097 -223 -225 177 -80 -65 120 -81 -1097 -65 -225 160 -1097 -223 183 -140 -1097 185 -67 -1097 20 -223 -126 106 -1097 157 -26 -140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 20 E= 4.7e-001 0.450000 0.000000 0.550000 0.000000 0.150000 0.000000 0.600000 0.250000 0.300000 0.400000 0.300000 0.000000 0.550000 0.350000 0.100000 0.000000 0.550000 0.300000 0.150000 0.000000 0.050000 0.050000 0.250000 0.650000 0.000000 0.000000 0.950000 0.050000 0.050000 0.900000 0.000000 0.050000 0.000000 0.050000 0.050000 0.900000 0.150000 0.150000 0.550000 0.150000 0.000000 0.150000 0.050000 0.800000 0.000000 0.050000 0.850000 0.100000 0.000000 0.850000 0.150000 0.000000 0.300000 0.050000 0.100000 0.550000 0.000000 0.700000 0.200000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- [GA][GT][CAG][AC][AC][TG]GCTGTGC[TA][CG] -------------------------------------------------------------------------------- Time 34.42 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 25 sites = 10 llr = 172 E-value = 2.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 18225396:176::::38a38a377 pos.-specific C 71::11::::::::1:2::3::::1 probability G 1:162514743321:::::4::421 matrix T 117221::35:1899a52::2:311 bits 2.1 1.9 * * * 1.7 * * * 1.5 * *** * * Relative 1.3 * **** ** ** Entropy 1.0 * *** * **** ** ** (24.8 bits) 0.8 ** *** * **** ** ** * 0.6 **** ********** ** ** ** 0.4 **** ******************** 0.2 ************************* 0.0 ------------------------- Multilevel CATGAGAAGTAATTTTTAAGAAGAA consensus AAGA GTGGGG AT AT AG sequence TT C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:103860766-103861493 99 5.60e-13 TAATAAAGAT CATGAGAAGTAATTTTTAACTAGAA AATAAAATAT chr7:103860632-103861603 233 5.60e-13 TAATAAAGAT CATGAGAAGTAATTTTTAACTAGAA AATAAAATAT chr15:66825958-66826701 45 5.98e-09 GTTACAGGAA CATAGCAAGTGGTTTTTAAAAAAAC AGGTGGTCAC chr13:14542586-14543495 301 7.06e-09 AAGCAGAGGC CCAGAAAGGTAAGTTTAAACAAAGA ACCGGGTCCC chr7:111004084-111004633 447 8.30e-09 ACATGTACAA TATGAAAATAAATTTTCTAGAATAA GGCAAAATTT chr6:88202909-88203453 214 1.14e-08 TGTGTATTTT CATTTGAGTGATTTTTTAAAAAAAT GTCCTTTCGG chr7:97209921-97210520 56 1.79e-08 TTTTTTAAAG AAAGCAAGGGGAGTTTTAAAAATAA AGTACTTGTT chr12:32050062-32050577 13 1.79e-08 ACTCAAATAC CTTTTGAATTAGTTTTAAAGAATTA TAAAGTAAGT chr9:123957650-123958639 189 5.65e-08 TCCTTTTATA CAGGGTAGGGAATTTTCTAGAAGGG TTAGGTAACC chr14:118194550-11819505 133 1.49e-07 CCGTCTTGTA GATAAGGAGGGGTGCTAAAGAAGAA GAAAGGACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 5.6e-13 98_[+5]_604 chr7:103860632-103861603 5.6e-13 232_[+5]_714 chr15:66825958-66826701 6e-09 44_[+5]_674 chr13:14542586-14543495 7.1e-09 300_[+5]_584 chr7:111004084-111004633 8.3e-09 446_[+5]_78 chr6:88202909-88203453 1.1e-08 213_[+5]_306 chr7:97209921-97210520 1.8e-08 55_[+5]_519 chr12:32050062-32050577 1.8e-08 12_[+5]_478 chr9:123957650-123958639 5.6e-08 188_[+5]_776 chr14:118194550-11819505 1.5e-07 132_[+5]_351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=25 seqs=10 chr7:103860766-103861493 ( 99) CATGAGAAGTAATTTTTAACTAGAA 1 chr7:103860632-103861603 ( 233) CATGAGAAGTAATTTTTAACTAGAA 1 chr15:66825958-66826701 ( 45) CATAGCAAGTGGTTTTTAAAAAAAC 1 chr13:14542586-14543495 ( 301) CCAGAAAGGTAAGTTTAAACAAAGA 1 chr7:111004084-111004633 ( 447) TATGAAAATAAATTTTCTAGAATAA 1 chr6:88202909-88203453 ( 214) CATTTGAGTGATTTTTTAAAAAAAT 1 chr7:97209921-97210520 ( 56) AAAGCAAGGGGAGTTTTAAAAATAA 1 chr12:32050062-32050577 ( 13) CTTTTGAATTAGTTTTAAAGAATTA 1 chr9:123957650-123958639 ( 189) CAGGGTAGGGAATTTTCTAGAAGGG 1 chr14:118194550-11819505 ( 133) GATAAGGAGGGGTGCTAAAGAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 12625 bayes= 10.5526 E= 2.6e+000 -139 157 -126 -140 161 -123 -997 -140 -39 -997 -126 141 -39 -997 133 -40 93 -123 -26 -40 20 -123 106 -140 178 -997 -126 -997 120 -997 74 -997 -997 -997 155 19 -139 -997 74 92 142 -997 33 -997 120 -997 33 -140 -997 -997 -26 160 -997 -997 -126 177 -997 -123 -997 177 -997 -997 -997 192 20 -24 -997 92 161 -997 -997 -40 193 -997 -997 -997 20 35 74 -997 161 -997 -997 -40 193 -997 -997 -997 20 -997 74 19 142 -997 -26 -140 142 -123 -126 -140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 10 E= 2.6e+000 0.100000 0.700000 0.100000 0.100000 0.800000 0.100000 0.000000 0.100000 0.200000 0.000000 0.100000 0.700000 0.200000 0.000000 0.600000 0.200000 0.500000 0.100000 0.200000 0.200000 0.300000 0.100000 0.500000 0.100000 0.900000 0.000000 0.100000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 0.700000 0.300000 0.100000 0.000000 0.400000 0.500000 0.700000 0.000000 0.300000 0.000000 0.600000 0.000000 0.300000 0.100000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.100000 0.900000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.300000 0.200000 0.000000 0.500000 0.800000 0.000000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.300000 0.300000 0.400000 0.000000 0.800000 0.000000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.400000 0.300000 0.700000 0.000000 0.200000 0.100000 0.700000 0.100000 0.100000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- CA[TA][GAT][AGT][GA]A[AG][GT][TG][AG][AG][TG]TTT[TAC][AT]A[GAC][AT]A[GAT][AG]A -------------------------------------------------------------------------------- Time 42.66 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 23 sites = 5 llr = 109 E-value = 2.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :6::24::::::::8:22:22:: pos.-specific C a48a2:8a82:::::82:86:6a probability G ::2:::2:::a:aa222222:2: matrix T ::::66::28:a::::46::82: bits 2.1 * * * * ** * 1.9 * * * **** * 1.7 * * * **** * 1.5 * ** ** **** * * * Relative 1.3 * ** ********** * * * Entropy 1.0 **** *********** * * * (31.5 bits) 0.8 **** *********** * * * 0.6 **************** ****** 0.4 **************** ****** 0.2 **************** ****** 0.0 ----------------------- Multilevel CACCTTCCCTGTGGACTTCCTCC consensus CG AAG TC GGAAGAAG sequence C CG G T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------- chr7:103860766-103861493 228 1.01e-14 ATTTTCTTTT CACCTTCCCTGTGGACTTCCTCC TAGAGACCCA chr7:103860632-103861603 362 1.01e-14 ATTTTCTTTT CACCTTCCCTGTGGACTTCCTCC TAGAGACCCA chr9:123957650-123958639 117 3.47e-10 TCTGCGGAAA CACCTAGCTTGTGGACATCAACC ATTCATCAGA chrX:7971363-7971747 59 8.69e-10 CCATTCCCTC CCCCATCCCTGTGGAGGGGGTGC AAGGCCCAGA chr6:88116825-88117394 257 1.19e-09 CTGCCTCCCC CCGCCACCCCGTGGGCCACCTTC TTTACCACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 1e-14 227_[+6]_477 chr7:103860632-103861603 1e-14 361_[+6]_587 chr9:123957650-123958639 3.5e-10 116_[+6]_850 chrX:7971363-7971747 8.7e-10 58_[+6]_303 chr6:88116825-88117394 1.2e-09 256_[+6]_290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=23 seqs=5 chr7:103860766-103861493 ( 228) CACCTTCCCTGTGGACTTCCTCC 1 chr7:103860632-103861603 ( 362) CACCTTCCCTGTGGACTTCCTCC 1 chr9:123957650-123958639 ( 117) CACCTAGCTTGTGGACATCAACC 1 chrX:7971363-7971747 ( 59) CCCCATCCCTGTGGAGGGGGTGC 1 chr6:88116825-88117394 ( 257) CCGCCACCCCGTGGGCCACCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 12665 bayes= 11.5577 E= 2.9e+000 -897 208 -897 -897 119 76 -897 -897 -897 176 -26 -897 -897 208 -897 -897 -39 -24 -897 119 61 -897 -897 119 -897 176 -26 -897 -897 208 -897 -897 -897 176 -897 -40 -897 -24 -897 160 -897 -897 206 -897 -897 -897 -897 192 -897 -897 206 -897 -897 -897 206 -897 161 -897 -26 -897 -897 176 -26 -897 -39 -24 -26 60 -39 -897 -26 119 -897 176 -26 -897 -39 135 -26 -897 -39 -897 -897 160 -897 135 -26 -40 -897 208 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 5 E= 2.9e+000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.200000 0.000000 0.600000 0.400000 0.000000 0.000000 0.600000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.200000 0.200000 0.200000 0.400000 0.200000 0.000000 0.200000 0.600000 0.000000 0.800000 0.200000 0.000000 0.200000 0.600000 0.200000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.600000 0.200000 0.200000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- C[AC][CG]C[TAC][TA][CG]C[CT][TC]GTGG[AG][CG][TACGA][TAG][CG][CAG][TA][CGT]C -------------------------------------------------------------------------------- Time 51.04 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 21 sites = 6 llr = 120 E-value = 7.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A 83::::::2:::::3::::75 pos.-specific C :::::aa77:3::82::::2: probability G :77a3::::::::2:2:82:: matrix T 2:3:7::32a7aa:58a2825 bits 2.1 * ** 1.9 * ** * ** * 1.7 * ** * ** * 1.5 * ** * *** ** Relative 1.3 * * ** * *** **** Entropy 1.0 ******** ***** **** (29.0 bits) 0.8 ************** **** * 0.6 ************** ****** 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel AGGGTCCCCTTTTCTTTGTAA consensus AT G T C A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr7:103860766-103861493 159 1.05e-12 ACAGCAAGGC AGGGTCCCCTTTTCATTGTAA TGCTGGTGTA chr7:103860632-103861603 293 1.05e-12 ACAGCAAGGC AGGGTCCCCTTTTCATTGTAA TGCTGGTGTA chr15:66825958-66826701 229 1.48e-10 AGGAGCCTAG AGGGTCCTCTCTTGTTTGTAA GTGCAGATGC chrX:7971363-7971747 253 1.78e-09 GACCCATGCT AATGTCCTCTCTTCCTTGGAT CCTTCCCTGA chr9:123957650-123958639 405 3.53e-09 GCTATTGACT AATGGCCCATTTTCTGTGTCT CTCCTGAGGT chr6:88202909-88203453 485 4.16e-09 TCACCCGCTT TGGGGCCCTTTTTCTTTTTTT TTCTCTCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 1e-12 158_[+7]_548 chr7:103860632-103861603 1e-12 292_[+7]_658 chr15:66825958-66826701 1.5e-10 228_[+7]_494 chrX:7971363-7971747 1.8e-09 252_[+7]_111 chr9:123957650-123958639 3.5e-09 404_[+7]_564 chr6:88202909-88203453 4.2e-09 484_[+7]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=21 seqs=6 chr7:103860766-103861493 ( 159) AGGGTCCCCTTTTCATTGTAA 1 chr7:103860632-103861603 ( 293) AGGGTCCCCTTTTCATTGTAA 1 chr15:66825958-66826701 ( 229) AGGGTCCTCTCTTGTTTGTAA 1 chrX:7971363-7971747 ( 253) AATGTCCTCTCTTCCTTGGAT 1 chr9:123957650-123958639 ( 405) AATGGCCCATTTTCTGTGTCT 1 chr6:88202909-88203453 ( 485) TGGGGCCCTTTTTCTTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12705 bayes= 11.4951 E= 7.7e+000 167 -923 -923 -66 35 -923 148 -923 -923 -923 148 34 -923 -923 206 -923 -923 -923 48 134 -923 208 -923 -923 -923 208 -923 -923 -923 150 -923 34 -65 150 -923 -66 -923 -923 -923 192 -923 50 -923 134 -923 -923 -923 192 -923 -923 -923 192 -923 182 -52 -923 35 -50 -923 92 -923 -923 -52 166 -923 -923 -923 192 -923 -923 180 -66 -923 -923 -52 166 135 -50 -923 -66 93 -923 -923 92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 6 E= 7.7e+000 0.833333 0.000000 0.000000 0.166667 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.166667 0.666667 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.166667 0.000000 0.333333 0.166667 0.000000 0.500000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.166667 0.833333 0.666667 0.166667 0.000000 0.166667 0.500000 0.000000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- A[GA][GT]G[TG]CC[CT]CT[TC]TTC[TA]TTGTA[AT] -------------------------------------------------------------------------------- Time 59.08 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 19 sites = 10 llr = 146 E-value = 4.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A ::86752:::::21::::4 pos.-specific C 5::235::11:222:7::: probability G 42:1:::9:918:323191 matrix T 1821::819:9:648:915 bits 2.1 1.9 1.7 * * * 1.5 **** ** Relative 1.3 ** ****** **** Entropy 1.0 ** ******** **** (21.1 bits) 0.8 ** ******** **** 0.6 *** ********* ***** 0.4 ************* ***** 0.2 ******************* 0.0 ------------------- Multilevel CTAAAATGTGTGTTTCTGT consensus GGTCCCA CAGGG A sequence CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------- chr7:103860766-103861493 9 2.31e-10 TGTGTGTA CTAAAATGTGTGATTCTGT TGCTTCTAGG chr7:103860632-103861603 143 2.31e-10 TGTGTGTGTA CTAAAATGTGTGATTCTGT TGCTTCTAGG chr18:32542067-32543176 908 1.27e-08 CTGGGTCTCC TTAACCTGTGTGTGTGTGT GTGTGTGTGT chr14:118194550-11819505 255 2.94e-08 TGCCAGATAA GTAAACAGTGTGTGTCGGA AATGAAAAAG chr8:122313263-122313662 180 1.65e-07 AACTTGTTAT CTAGACTGTGTCCGGCTGA CTAATCTTGC chr7:111004084-111004633 230 2.07e-07 GCCACAATTG CTTCCCTGTGTGTCTGTGG GCTCAGATAT chr9:123957650-123958639 473 2.23e-07 GACCTAAGGC CTAACATGTCTGTTTGTTT TTAAATGGAG chr3:146405565-146406311 228 4.70e-07 GAAGTTCCTC GTACAAAGTGGCTCTCTGA GAGGATTAGG chr1:130299952-130300620 319 5.34e-07 AATGGCAGTT GGTTAATGTGTGCTGCTGA TAAAAGCAGT chr6:88202909-88203453 296 5.68e-07 CGGTAGATAA GGAAACTTCGTGTATCTGT TTCCGGACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 2.3e-10 8_[+8]_700 chr7:103860632-103861603 2.3e-10 142_[+8]_810 chr18:32542067-32543176 1.3e-08 907_[+8]_183 chr14:118194550-11819505 2.9e-08 254_[+8]_235 chr8:122313263-122313662 1.7e-07 179_[+8]_201 chr7:111004084-111004633 2.1e-07 229_[+8]_301 chr9:123957650-123958639 2.2e-07 472_[+8]_498 chr3:146405565-146406311 4.7e-07 227_[+8]_500 chr1:130299952-130300620 5.3e-07 318_[+8]_331 chr6:88202909-88203453 5.7e-07 295_[+8]_230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=19 seqs=10 chr7:103860766-103861493 ( 9) CTAAAATGTGTGATTCTGT 1 chr7:103860632-103861603 ( 143) CTAAAATGTGTGATTCTGT 1 chr18:32542067-32543176 ( 908) TTAACCTGTGTGTGTGTGT 1 chr14:118194550-11819505 ( 255) GTAAACAGTGTGTGTCGGA 1 chr8:122313263-122313662 ( 180) CTAGACTGTGTCCGGCTGA 1 chr7:111004084-111004633 ( 230) CTTCCCTGTGTGTCTGTGG 1 chr9:123957650-123958639 ( 473) CTAACATGTCTGTTTGTTT 1 chr3:146405565-146406311 ( 228) GTACAAAGTGGCTCTCTGA 1 chr1:130299952-130300620 ( 319) GGTTAATGTGTGCTGCTGA 1 chr6:88202909-88203453 ( 296) GGAAACTTCGTGTATCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 12745 bayes= 10.5663 E= 4.5e+001 -997 109 74 -140 -997 -997 -26 160 161 -997 -997 -40 120 -24 -126 -140 142 35 -997 -997 93 109 -997 -997 -39 -997 -997 160 -997 -997 191 -140 -997 -123 -997 177 -997 -123 191 -997 -997 -997 -126 177 -997 -24 174 -997 -39 -24 -997 119 -139 -24 33 60 -997 -997 -26 160 -997 157 33 -997 -997 -997 -126 177 -997 -997 191 -140 61 -997 -126 92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 10 E= 4.5e+001 0.000000 0.500000 0.400000 0.100000 0.000000 0.000000 0.200000 0.800000 0.800000 0.000000 0.000000 0.200000 0.600000 0.200000 0.100000 0.100000 0.700000 0.300000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.900000 0.100000 0.000000 0.100000 0.000000 0.900000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.200000 0.800000 0.000000 0.200000 0.200000 0.000000 0.600000 0.100000 0.200000 0.300000 0.400000 0.000000 0.000000 0.200000 0.800000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.900000 0.100000 0.400000 0.000000 0.100000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- [CG][TG][AT][AC][AC][AC][TA]GTGT[GC][TAC][TGC][TG][CG]TG[TA] -------------------------------------------------------------------------------- Time 67.02 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 17 sites = 4 llr = 81 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A a::::3::::8:aa::: pos.-specific C :::5:::a3a38::::8 probability G ::a::8a::::3::aa3 matrix T :a:5a:::8:::::::: bits 2.1 * ** * ** 1.9 *** * ** * **** 1.7 *** * ** * **** 1.5 *** * ** * **** Relative 1.3 *** ************* Entropy 1.0 ***************** (29.2 bits) 0.8 ***************** 0.6 ***************** 0.4 ***************** 0.2 ***************** 0.0 ----------------- Multilevel ATGCTGGCTCACAAGGC consensus T A C CG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------- chr7:103860766-103861493 356 4.85e-11 CTCAAGCTAG ATGCTGGCTCACAAGGC TGAACACACC chr7:103860632-103861603 490 4.85e-11 CTCAAGCTAG ATGCTGGCTCACAAGGC TGAACACACC chr18:32542067-32543176 260 1.32e-09 CTATAATGCC ATGTTGGCTCCCAAGGG CCCCTCAGTA chr3:146405565-146406311 555 2.51e-09 TTAACTGTTC ATGTTAGCCCAGAAGGC CTCCAACCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 4.8e-11 355_[+9]_355 chr7:103860632-103861603 4.8e-11 489_[+9]_465 chr18:32542067-32543176 1.3e-09 259_[+9]_833 chr3:146405565-146406311 2.5e-09 554_[+9]_175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=17 seqs=4 chr7:103860766-103861493 ( 356) ATGCTGGCTCACAAGGC 1 chr7:103860632-103861603 ( 490) ATGCTGGCTCACAAGGC 1 chr18:32542067-32543176 ( 260) ATGTTGGCTCCCAAGGG 1 chr3:146405565-146406311 ( 555) ATGTTAGCCCAGAAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 17 n= 12785 bayes= 11.6417 E= 1.8e+002 193 -865 -865 -865 -865 -865 -865 192 -865 -865 206 -865 -865 108 -865 92 -865 -865 -865 192 -7 -865 165 -865 -865 -865 206 -865 -865 208 -865 -865 -865 9 -865 151 -865 208 -865 -865 152 9 -865 -865 -865 167 6 -865 193 -865 -865 -865 193 -865 -865 -865 -865 -865 206 -865 -865 -865 206 -865 -865 167 6 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 17 nsites= 4 E= 1.8e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- ATG[CT]T[GA]GC[TC]C[AC][CG]AAGG[CG] -------------------------------------------------------------------------------- Time 74.87 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 25 sites = 2 llr = 70 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::::::a:a:a::::aa:::::a:: pos.-specific C a:::aa:a:a:aaa::::aa:a::a probability G ::aa:::::::::::::a:::::a: matrix T :a::::::::::::a:::::a:::: bits 2.1 * **** * * *** *** * ** 1.9 ************************* 1.7 ************************* 1.5 ************************* Relative 1.3 ************************* Entropy 1.0 ************************* (50.7 bits) 0.8 ************************* 0.6 ************************* 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel CTGGCCACACACCCTAAGCCTCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr7:103860766-103861493 292 5.51e-16 CTGAAAACAT CTGGCCACACACCCTAAGCCTCAGC ATGACTCAGC chr7:103860632-103861603 426 5.51e-16 CTGAAAACAT CTGGCCACACACCCTAAGCCTCAGC ATGACTCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:103860766-103861493 5.5e-16 291_[+10]_411 chr7:103860632-103861603 5.5e-16 425_[+10]_521 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=25 seqs=2 chr7:103860766-103861493 ( 292) CTGGCCACACACCCTAAGCCTCAGC 1 chr7:103860632-103861603 ( 426) CTGGCCACACACCCTAAGCCTCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 12625 bayes= 12.6238 E= 2.0e+002 -765 208 -765 -765 -765 -765 -765 192 -765 -765 206 -765 -765 -765 206 -765 -765 208 -765 -765 -765 208 -765 -765 193 -765 -765 -765 -765 208 -765 -765 193 -765 -765 -765 -765 208 -765 -765 193 -765 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 -765 -765 192 193 -765 -765 -765 193 -765 -765 -765 -765 -765 206 -765 -765 208 -765 -765 -765 208 -765 -765 -765 -765 -765 192 -765 208 -765 -765 193 -765 -765 -765 -765 -765 206 -765 -765 208 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 2 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- CTGGCCACACACCCTAAGCCTCAGC -------------------------------------------------------------------------------- Time 82.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:32050062-32050577 2.31e-06 12_[+5(1.79e-08)]_84_[+1(6.04e-05)]_7_[+4(4.47e-05)]_225_[+3(6.58e-08)]_101 chr13:14542586-14543495 1.57e-09 8_[+4(6.86e-06)]_277_[+5(7.06e-09)]_127_[+3(3.96e-09)]_246_[+10(9.73e-05)]_92_[+1(9.80e-06)]_48 chr14:118194550-11819505 3.98e-07 42_[+4(3.34e-05)]_75_[+5(1.49e-07)]_97_[+8(2.94e-08)]_34_[+1(1.05e-05)]_180 chr15:66825958-66826701 3.93e-12 44_[+5(5.98e-09)]_85_[+10(5.76e-05)]_49_[+7(1.48e-10)]_169_[+4(5.53e-05)]_95_[+1(7.88e-08)]_194 chr18:38494822-38495283 2.32e-09 87_[+2(3.17e-10)]_54_[+4(1.63e-07)]_72_[+1(4.00e-07)]_188 chr18:32542067-32543176 1.54e-13 28_[+3(3.65e-09)]_10_[+1(4.45e-07)]_175_[+9(1.32e-09)]_50_[+4(1.28e-05)]_566_[+8(1.27e-08)]_183 chr1:130299952-130300620 2.87e-07 143_[+10(9.73e-05)]_[+1(1.83e-07)]_129_[+8(5.34e-07)]_157_[+4(3.47e-06)]_159 chr1:134092945-134093215 3.70e-07 25_[+2(3.91e-10)]_46_[+2(4.47e-05)]_7_[+4(1.64e-05)]_32_[+2(6.17e-05)]_39_[+1(4.18e-06)]_13 chr3:146405565-146406311 2.14e-12 137_[+3(1.15e-08)]_7_[+4(9.22e-07)]_43_[+8(4.70e-07)]_308_[+9(2.51e-09)]_125_[+1(1.13e-05)]_29 chr6:88116825-88117394 1.89e-13 107_[+1(4.94e-07)]_2_[+4(5.93e-05)]_111_[+6(1.19e-09)]_102_[+4(4.68e-06)]_135_[+3(2.19e-09)]_13 chr6:88202909-88203453 1.42e-18 8_[+10(1.91e-06)]_59_[+2(2.83e-10)]_97_[+5(1.14e-08)]_57_[+8(5.68e-07)]_170_[+7(4.16e-09)]_39 chr7:103860632-103861603 1.53e-72 142_[+8(2.31e-10)]_71_[+5(5.60e-13)]_35_[+7(1.05e-12)]_48_[+6(1.01e-14)]_5_[+3(1.72e-15)]_11_[+10(5.51e-16)]_17_[+4(1.05e-08)]_7_[+9(4.85e-11)]_7_[+1(5.38e-09)]_[+2(4.79e-13)]_413 chr7:97209921-97210520 1.57e-04 55_[+5(1.79e-08)]_184_[+4(5.15e-05)]_13_[+1(1.76e-06)]_73_[+5(9.40e-05)]_188 chr7:16294673-16295504 1.43e-12 354_[+2(3.76e-05)]_16_[+2(7.24e-12)]_79_[+1(5.37e-08)]_156_[+3(1.15e-08)]_89_[+4(2.87e-05)]_28 chr7:111004084-111004633 1.61e-08 176_[+1(1.76e-06)]_32_[+8(2.07e-07)]_20_[+1(3.87e-05)]_157_[+5(8.30e-09)]_78 chr7:103860766-103861493 9.01e-74 8_[+8(2.31e-10)]_71_[+5(5.60e-13)]_35_[+7(1.05e-12)]_48_[+6(1.01e-14)]_5_[+3(1.72e-15)]_11_[+10(5.51e-16)]_17_[+4(1.05e-08)]_7_[+9(4.85e-11)]_7_[+1(5.38e-09)]_[+2(4.79e-13)]_303 chr8:122313263-122313662 1.60e-09 61_[+1(1.98e-09)]_97_[+8(1.65e-07)]_106_[+10(6.09e-06)]_7_[+8(2.56e-05)]_44 chr9:123957650-123958639 9.83e-20 116_[+6(3.47e-10)]_49_[+5(5.65e-08)]_164_[+1(6.04e-05)]_6_[+7(3.53e-09)]_47_[+8(2.23e-07)]_15_[+7(2.87e-05)]_286_[+3(1.68e-07)]_20_[+4(3.75e-07)]_116 chrX:7840921-7841535 1.30e-05 398_[+1(2.53e-05)]_24_[+4(3.81e-06)]_81_[+3(6.88e-09)]_50 chrX:7971363-7971747 4.43e-12 58_[+6(8.69e-10)]_76_[+4(5.93e-05)]_6_[+1(3.26e-06)]_53_[+7(1.78e-09)]_111 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************