# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SNF2_N PF00176.18 CAMPEP_0199166698 - 8.3e-63 211.9 0.0 1.1e-62 211.5 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199166698 - 3.4e-13 49.2 0.0 1.7e-12 47.0 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain zf-RING_2 PF13639.1 CAMPEP_0199166698 - 8.6e-12 44.6 2.2 2.4e-11 43.2 1.5 1.8 1 0 0 1 1 1 1 Ring finger domain zf-C3HC4_2 PF13923.1 CAMPEP_0199166698 - 1.6e-08 34.4 1.6 5e-08 32.8 1.1 1.9 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 CAMPEP_0199166698 - 2.3e-08 33.6 1.5 5e-08 32.5 1.0 1.6 1 0 0 1 1 1 1 zinc-RING finger domain zf-C3HC4 PF00097.20 CAMPEP_0199166698 - 2.4e-07 30.2 0.5 2.4e-07 30.2 0.3 2.0 3 0 0 3 3 1 1 Zinc finger, C3HC4 type (RING finger) zf-rbx1 PF12678.2 CAMPEP_0199166698 - 3.7e-07 30.1 0.2 9.4e-07 28.8 0.2 1.7 1 0 0 1 1 1 1 RING-H2 zinc finger ResIII PF04851.10 CAMPEP_0199166698 - 3.8e-07 30.1 0.0 1.1e-06 28.6 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0199166698 - 5.4e-07 29.2 0.0 1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase zf-C3HC4_3 PF13920.1 CAMPEP_0199166698 - 7.1e-07 28.8 1.4 1.5e-06 27.7 0.9 1.6 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 CAMPEP_0199166698 - 0.0072 15.8 1.0 0.017 14.6 0.7 1.6 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain zf-Apc11 PF12861.2 CAMPEP_0199166698 - 0.017 14.9 1.3 0.036 13.9 0.4 1.9 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 11 RING-H2 finger zf-C3HC4_4 PF15227.1 CAMPEP_0199166698 - 0.078 12.8 1.0 0.23 11.3 0.7 1.9 1 1 0 1 1 1 0 zinc finger of C3HC4-type, RING zf-RING_UBOX PF13445.1 CAMPEP_0199166698 - 0.091 12.5 0.8 0.21 11.3 0.5 1.7 1 0 0 1 1 1 0 RING-type zinc-finger zf-RING_6 PF14835.1 CAMPEP_0199166698 - 0.097 12.4 2.2 0.28 11.0 1.5 1.7 1 0 0 1 1 1 0 zf-RING of BARD1-type protein Baculo_RING PF05883.6 CAMPEP_0199166698 - 0.099 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Baculovirus U-box/Ring-like domain PHD PF00628.24 CAMPEP_0199166698 - 0.28 10.8 1.9 0.73 9.5 1.3 1.8 1 0 0 1 1 1 0 PHD-finger zf-RING-like PF08746.6 CAMPEP_0199166698 - 0.75 9.8 6.0 0.21 11.5 1.6 2.1 2 0 0 2 2 2 0 RING-like domain Endonuclease_7 PF02945.10 CAMPEP_0199166698 - 1.5 8.5 3.7 28 4.5 0.0 2.9 2 1 0 2 2 2 0 Recombination endonuclease VII SNF2_N PF00176.18 CAMPEP_0199168278 - 6.4e-63 212.3 0.1 7.2e-31 107.0 0.0 2.3 2 0 0 2 2 2 2 SNF2 family N-terminal domain zf-PARP PF00645.13 CAMPEP_0199168278 - 1.1e-14 54.3 0.4 3.6e-13 49.5 0.0 2.8 2 0 0 2 2 2 1 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Helicase_C PF00271.26 CAMPEP_0199168278 - 1.7e-13 50.2 0.0 4.2e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0199168278 - 3.5e-08 33.4 0.1 0.00033 20.5 0.0 3.4 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit SAP PF02037.22 CAMPEP_0199168278 - 4.4e-08 32.4 1.5 6.2e-08 31.9 0.0 2.1 2 0 0 2 2 2 1 SAP domain zf-RING_2 PF13639.1 CAMPEP_0199168278 - 4.4e-08 32.8 0.9 4.4e-08 32.8 0.7 2.7 2 0 0 2 2 2 1 Ring finger domain zf-C3HC4 PF00097.20 CAMPEP_0199168278 - 4.8e-06 26.1 0.4 4.8e-06 26.1 0.3 2.6 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-rbx1 PF12678.2 CAMPEP_0199168278 - 0.00024 21.1 0.3 0.00024 21.1 0.2 2.0 2 0 0 2 2 2 1 RING-H2 zinc finger DUF755 PF05501.6 CAMPEP_0199168278 - 5 7.1 8.5 0.3 11.1 0.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF755) SNF2_N PF00176.18 CAMPEP_0199181174 - 1.5e-67 227.4 0.7 5.6e-67 225.6 0.1 1.9 2 0 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199181174 - 5.2e-14 51.8 0.0 1.1e-13 50.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0199181174 - 0.00019 20.3 0.0 0.019 13.7 0.0 2.3 2 0 0 2 2 2 2 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0199174490 - 2.1e-31 108.8 0.0 7.3e-31 107.0 0.0 1.8 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199174490 - 9.2e-14 51.0 0.0 2.9e-13 49.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain zf-RING_2 PF13639.1 CAMPEP_0199174490 - 8.5e-11 41.5 2.4 8.5e-11 41.5 1.7 2.5 2 0 0 2 2 2 1 Ring finger domain zf-C3HC4 PF00097.20 CAMPEP_0199174490 - 1.8e-07 30.6 1.5 1.8e-07 30.6 1.0 2.4 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-rbx1 PF12678.2 CAMPEP_0199174490 - 3.7e-07 30.1 0.5 1.4e-06 28.3 0.3 2.1 2 0 0 2 2 1 1 RING-H2 zinc finger zf-C3HC4_2 PF13923.1 CAMPEP_0199174490 - 5.3e-07 29.5 1.6 5.3e-07 29.5 1.1 2.5 3 0 0 3 3 3 1 Zinc finger, C3HC4 type (RING finger) zf-Nse PF11789.3 CAMPEP_0199174490 - 0.0027 17.1 0.4 0.0027 17.1 0.2 2.2 3 0 0 3 3 2 1 Zinc-finger of the MIZ type in Nse subunit Prok-RING_1 PF14446.1 CAMPEP_0199174490 - 0.0027 17.3 1.7 0.0027 17.3 1.2 2.6 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 zf-Apc11 PF12861.2 CAMPEP_0199174490 - 0.0034 17.1 0.5 0.014 15.2 0.3 2.0 2 0 0 2 2 2 1 Anaphase-promoting complex subunit 11 RING-H2 finger zf-RING_5 PF14634.1 CAMPEP_0199174490 - 0.0051 16.5 1.7 0.0051 16.5 1.2 2.7 2 1 0 2 2 1 1 zinc-RING finger domain PHD PF00628.24 CAMPEP_0199174490 - 0.009 15.6 1.3 0.009 15.6 0.9 2.1 2 0 0 2 2 2 1 PHD-finger zf-RING_UBOX PF13445.1 CAMPEP_0199174490 - 0.049 13.3 0.3 0.049 13.3 0.2 2.4 2 0 0 2 2 2 0 RING-type zinc-finger FANCL_C PF11793.3 CAMPEP_0199174490 - 0.051 13.5 1.4 0.23 11.4 1.0 2.2 1 1 0 1 1 1 0 FANCL C-terminal domain zf-C3HC4_4 PF15227.1 CAMPEP_0199174490 - 0.12 12.2 4.9 0.1 12.4 1.8 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING SNF2_N PF00176.18 CAMPEP_0199200662 - 2.4e-24 85.6 0.0 3.9e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199200662 - 3e-14 52.6 0.0 6.1e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0199200662 - 0.013 15.2 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Amidase_2 PF01510.20 CAMPEP_0199200662 - 0.078 13.0 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase DNA_pol3_chi PF04364.8 CAMPEP_0199200662 - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III chi subunit, HolC SNF2_N PF00176.18 CAMPEP_0199225748 - 1.3e-58 198.2 0.0 1.8e-58 197.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199225748 - 1.1e-12 47.6 0.1 7.1e-12 45.0 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0199225748 - 1.3e-09 38.1 0.0 9.1e-09 35.4 0.0 2.5 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0199225748 - 0.0019 17.7 0.0 0.024 14.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase HDA2-3 PF11496.3 CAMPEP_0199225748 - 0.13 11.1 0.0 0.3 9.8 0.0 1.6 1 0 0 1 1 1 0 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0199225538 - 1.7e-63 214.2 4.2 2.3e-63 213.8 2.9 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199225538 - 2e-16 59.6 0.0 9.4e-16 57.4 0.0 2.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 CAMPEP_0199225538 - 1.2e-06 28.0 0.0 2.4e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 CAMPEP_0199225538 - 1.6e-06 28.0 0.1 2.9e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 CAMPEP_0199225538 - 0.012 14.6 0.0 0.022 13.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 CAMPEP_0199225538 - 0.022 14.9 0.4 0.09 12.9 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_34 PF13872.1 CAMPEP_0199225538 - 0.092 11.5 0.1 0.16 10.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF1840 PF08895.6 CAMPEP_0199225538 - 0.45 10.5 3.4 1.6 8.7 2.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1840) SNF2_N PF00176.18 CAMPEP_0199212336 - 4.4e-40 137.3 0.0 6.4e-40 136.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199212336 - 1.7e-11 43.8 0.0 3.2e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 CAMPEP_0199222730 - 1.4e-65 221.0 0.2 2e-65 220.5 0.1 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199222730 - 7.9e-13 48.0 0.0 1.8e-12 46.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0199222730 - 2.5e-07 30.7 0.5 4.6e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HDA2-3 PF11496.3 CAMPEP_0199222730 - 9e-05 21.4 0.1 0.0002 20.2 0.0 1.5 1 1 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 DEAD PF00270.24 CAMPEP_0199222730 - 0.00055 19.4 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 CAMPEP_0199222730 - 0.0044 17.1 0.8 0.052 13.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 CAMPEP_0199222730 - 0.085 11.8 0.0 0.19 10.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MCPVI PF02993.9 CAMPEP_0199222730 - 0.7 10.0 6.4 1.4 8.9 4.5 1.4 1 0 0 1 1 1 0 Minor capsid protein VI SNF2_N PF00176.18 CAMPEP_0199247630 - 3.5e-51 173.7 0.0 4.6e-51 173.3 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199247630 - 5.3e-12 45.4 0.0 1e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 CAMPEP_0199247630 - 3e-07 30.0 0.0 7.1e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 CAMPEP_0199247630 - 0.00018 21.3 0.0 0.00056 19.7 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Ribosomal_60s PF00428.14 CAMPEP_0199247630 - 0.019 15.3 10.9 0.019 15.3 7.6 1.9 2 0 0 2 2 2 0 60s Acidic ribosomal protein Nop14 PF04147.7 CAMPEP_0199247630 - 0.27 9.0 6.0 0.35 8.7 4.2 1.1 1 0 0 1 1 1 0 Nop14-like family BSP_II PF05432.6 CAMPEP_0199247630 - 0.42 9.8 12.1 0.66 9.1 8.4 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) DUF2457 PF10446.4 CAMPEP_0199247630 - 2.6 6.6 10.8 3.9 6.1 7.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Sigma70_ner PF04546.8 CAMPEP_0199247630 - 7.7 6.0 10.5 9.1 5.8 6.1 1.9 2 0 0 2 2 2 0 Sigma-70, non-essential region SNF2_N PF00176.18 CAMPEP_0199311228 - 3.3e-58 196.8 0.0 6.5e-58 195.8 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0199311228 - 2.7e-11 43.1 0.0 1e-10 41.3 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 CAMPEP_0199311228 - 5.8e-05 22.6 0.0 0.00028 20.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase PHD PF00628.24 CAMPEP_0199311228 - 0.00071 19.2 2.6 0.00071 19.2 1.8 4.6 4 1 0 4 4 4 1 PHD-finger ResIII PF04851.10 CAMPEP_0199311228 - 0.025 14.4 0.0 0.12 12.1 0.0 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_22 PF13401.1 CAMPEP_0199311228 - 0.048 13.8 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain SNF2_N PF00176.18 CAMPEP_0199300674 - 2.6e-71 239.8 0.0 3.4e-71 239.4 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain HIRAN PF08797.6 CAMPEP_0199300674 - 1.5e-12 47.3 0.0 3.3e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 HIRAN domain Helicase_C PF00271.26 CAMPEP_0199300674 - 1.7e-12 46.9 0.0 3.9e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain zf-RING_2 PF13639.1 CAMPEP_0199300674 - 3.1e-07 30.0 5.5 6.2e-07 29.1 3.8 1.5 1 0 0 1 1 1 1 Ring finger domain zf-C3HC4_3 PF13920.1 CAMPEP_0199300674 - 1.7e-06 27.5 5.7 3e-06 26.7 4.0 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-C3HC4 PF00097.20 CAMPEP_0199300674 - 2.7e-05 23.7 3.9 4.7e-05 22.9 2.7 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.1 CAMPEP_0199300674 - 0.00015 21.6 6.4 0.00031 20.7 4.5 1.6 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-rbx1 PF12678.2 CAMPEP_0199300674 - 0.00056 19.9 1.5 0.0016 18.4 1.1 1.8 1 1 0 1 1 1 1 RING-H2 zinc finger zf-RING_UBOX PF13445.1 CAMPEP_0199300674 - 0.00094 18.8 2.1 0.0021 17.7 1.4 1.6 1 0 0 1 1 1 1 RING-type zinc-finger zf-RING_5 PF14634.1 CAMPEP_0199300674 - 0.003 17.2 4.2 0.0091 15.7 3.0 1.8 1 1 0 1 1 1 1 zinc-RING finger domain zf-Apc11 PF12861.2 CAMPEP_0199300674 - 0.013 15.3 1.2 0.03 14.1 0.9 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger CAF1C_H4-bd PF12265.3 CAMPEP_0199300674 - 0.19 11.6 0.1 0.72 9.7 0.0 2.0 2 0 0 2 2 1 0 Histone-binding protein RBBP4 or subunit C of CAF1 complex zf-C3HC4_4 PF15227.1 CAMPEP_0199300674 - 0.68 9.8 5.7 1.7 8.5 3.9 1.7 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING Prok-RING_1 PF14446.1 CAMPEP_0199300674 - 5.9 6.6 7.9 5.5 6.8 2.9 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1