IMPORTANT WARNING: Sequences Paramecium-caudatum-PCAUDG02994 and Paramecium-caudatum-PCAUDG10616 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-Wilson-CAMPEP_0189424234 and Karenia-brevis-SP3-CAMPEP_0189258408 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-Wilson-CAMPEP_0189424234 and Karenia-brevis-CCMP2229-CAMPEP_0188909504 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-Wilson-CAMPEP_0189424234 and Karenia-brevis-SP1-CAMPEP_0189087650 are exactly identical IMPORTANT WARNING: Sequences Perkinsus_marinus-EER04402.1 and Perkinsus_marinus-EER04007.1 are exactly identical IMPORTANT WARNING: Sequences Perkinsus_marinus-EER04402.1 and Perkinsus_marinus-EEQ99722.1 are exactly identical IMPORTANT WARNING: Sequences Perkinsus_marinus-EER04402.1 and Perkinsus_marinus-EEQ98671.1 are exactly identical IMPORTANT WARNING: Sequences Perkinsus_marinus-EER04402.1 and Perkinsus_marinus-EER15538.1 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-Wilson-CAMPEP_0189363102 and Karenia-brevis-SP3-CAMPEP_0189312062 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-Wilson-CAMPEP_0189363102 and Karenia-brevis-CCMP2229-CAMPEP_0188887872 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-SP3-CAMPEP_0189192184 and Karenia-brevis-CCMP2229-CAMPEP_0188903032 are exactly identical IMPORTANT WARNING: Sequences Karenia-brevis-SP3-CAMPEP_0189192184 and Karenia-brevis-SP1-CAMPEP_0189015932 are exactly identical IMPORTANT WARNING: Sequences Chromera-velia-CCMP2878_CAMPEP_0184617644 and Chromera-velia-CAMPEP_0184617644 are exactly identical IMPORTANT WARNING Found 13 sequences that are exactly identical to other sequences in the alignment. Normally they should be excluded from the analysis. Just in case you might need it, an alignment file with sequence duplicates removed is printed to file H2A-with-other-lineages.muscle.minCov50.fa.reduced This is RAxML version 8.1.3 released by Alexandros Stamatakis on August 13 2014. With greatly appreciated code contributions by: Andre Aberer (HITS) Simon Berger (HITS) Alexey Kozlov (HITS) Kassian Kobert (HITS) David Dao (KIT and HITS) Nick Pattengale (Sandia) Wayne Pfeiffer (SDSC) Akifumi S. Tanabe (NRIFS) Alignment has 144 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 7.52% RAxML rapid bootstrapping and subsequent ML search Using 1 distinct models/data partitions with joint branch length optimization Executing 100 rapid bootstrap inferences and thereafter a thorough ML search All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Alignment Patterns: 144 Name: No Name Provided DataType: AA Substitution Matrix: LG Using fixed base frequencies RAxML was called as follows: raxml -f a -s H2A-with-other-lineages.muscle.minCov50.fa -n RAxML-H2A-with-other-lineages.muscle.minCov50 -m PROTGAMMALG -T 16 -p 12345 -N 100 -x 12345 Time for BS model parameter optimization 0.396682 Bootstrap[0]: Time 8.691550 seconds, bootstrap likelihood -13253.714315, best rearrangement setting 13 Bootstrap[1]: Time 7.026144 seconds, bootstrap likelihood -13344.481843, best rearrangement setting 13 Bootstrap[2]: Time 6.703665 seconds, bootstrap likelihood -11818.438320, best rearrangement setting 12 Bootstrap[3]: Time 6.080419 seconds, bootstrap likelihood -12617.157624, best rearrangement setting 15 Bootstrap[4]: Time 6.610589 seconds, bootstrap likelihood -13214.605460, best rearrangement setting 10 Bootstrap[5]: Time 6.943944 seconds, bootstrap likelihood -12005.965672, best rearrangement setting 10 Bootstrap[6]: Time 5.968900 seconds, bootstrap likelihood -11602.856312, best rearrangement setting 6 Bootstrap[7]: Time 6.478848 seconds, bootstrap likelihood -11994.278438, best rearrangement setting 14 Bootstrap[8]: Time 5.557930 seconds, bootstrap likelihood -11729.045108, best rearrangement setting 5 Bootstrap[9]: Time 5.905585 seconds, bootstrap likelihood -12504.449178, best rearrangement setting 7 Bootstrap[10]: Time 7.224097 seconds, bootstrap likelihood -13482.695594, best rearrangement setting 7 Bootstrap[11]: Time 5.877389 seconds, bootstrap likelihood -12797.580860, best rearrangement setting 5 Bootstrap[12]: Time 6.223970 seconds, bootstrap likelihood -11617.052361, best rearrangement setting 8 Bootstrap[13]: Time 7.263994 seconds, bootstrap likelihood -13743.045846, best rearrangement setting 7 Bootstrap[14]: Time 6.610620 seconds, bootstrap likelihood -11374.848027, best rearrangement setting 12 Bootstrap[15]: Time 7.203017 seconds, bootstrap likelihood -12674.784835, best rearrangement setting 15 Bootstrap[16]: Time 7.126089 seconds, bootstrap likelihood -12460.238329, best rearrangement setting 12 Bootstrap[17]: Time 6.195880 seconds, bootstrap likelihood -12902.772556, best rearrangement setting 12 Bootstrap[18]: Time 6.296165 seconds, bootstrap likelihood -12442.603200, best rearrangement setting 5 Bootstrap[19]: Time 6.960945 seconds, bootstrap likelihood -12549.064589, best rearrangement setting 8 Bootstrap[20]: Time 6.784588 seconds, bootstrap likelihood -13768.036733, best rearrangement setting 10 Bootstrap[21]: Time 6.498222 seconds, bootstrap likelihood -11589.885909, best rearrangement setting 6 Bootstrap[22]: Time 6.405083 seconds, bootstrap likelihood -12571.094664, best rearrangement setting 5 Bootstrap[23]: Time 6.458626 seconds, bootstrap likelihood -12507.209697, best rearrangement setting 7 Bootstrap[24]: Time 6.776394 seconds, bootstrap likelihood -12406.288611, best rearrangement setting 8 Bootstrap[25]: Time 5.992382 seconds, bootstrap likelihood -13412.832039, best rearrangement setting 6 Bootstrap[26]: Time 6.242419 seconds, bootstrap likelihood -11698.883881, best rearrangement setting 12 Bootstrap[27]: Time 7.403068 seconds, bootstrap likelihood -12932.871223, best rearrangement setting 10 Bootstrap[28]: Time 6.889091 seconds, bootstrap likelihood -12805.770004, best rearrangement setting 11 Bootstrap[29]: Time 7.716584 seconds, bootstrap likelihood -12055.487053, best rearrangement setting 12 Bootstrap[30]: Time 6.496929 seconds, bootstrap likelihood -13271.992994, best rearrangement setting 15 Bootstrap[31]: Time 6.778973 seconds, bootstrap likelihood -13690.794978, best rearrangement setting 15 Bootstrap[32]: Time 6.243579 seconds, bootstrap likelihood -13704.548774, best rearrangement setting 6 Bootstrap[33]: Time 6.552360 seconds, bootstrap likelihood -12053.617103, best rearrangement setting 15 Bootstrap[34]: Time 7.153594 seconds, bootstrap likelihood -12982.448141, best rearrangement setting 11 Bootstrap[35]: Time 6.586156 seconds, bootstrap likelihood -13219.180966, best rearrangement setting 8 Bootstrap[36]: Time 7.213395 seconds, bootstrap likelihood -11576.367441, best rearrangement setting 9 Bootstrap[37]: Time 6.672754 seconds, bootstrap likelihood -11739.055173, best rearrangement setting 11 Bootstrap[38]: Time 6.357224 seconds, bootstrap likelihood -13761.103657, best rearrangement setting 8 Bootstrap[39]: Time 6.083212 seconds, bootstrap likelihood -13038.502625, best rearrangement setting 13 Bootstrap[40]: Time 6.412439 seconds, bootstrap likelihood -13499.292348, best rearrangement setting 13 Bootstrap[41]: Time 5.923982 seconds, bootstrap likelihood -12487.338754, best rearrangement setting 10 Bootstrap[42]: Time 6.367123 seconds, bootstrap likelihood -12506.090949, best rearrangement setting 5 Bootstrap[43]: Time 6.569471 seconds, bootstrap likelihood -12911.126949, best rearrangement setting 14 Bootstrap[44]: Time 6.362946 seconds, bootstrap likelihood -12641.105407, best rearrangement setting 10 Bootstrap[45]: Time 7.750419 seconds, bootstrap likelihood -14108.713232, best rearrangement setting 15 Bootstrap[46]: Time 7.727565 seconds, bootstrap likelihood -12556.147316, best rearrangement setting 14 Bootstrap[47]: Time 6.602862 seconds, bootstrap likelihood -12874.963916, best rearrangement setting 8 Bootstrap[48]: Time 6.896320 seconds, bootstrap likelihood -12516.123248, best rearrangement setting 6 Bootstrap[49]: Time 7.127451 seconds, bootstrap likelihood -12400.913186, best rearrangement setting 7 Bootstrap[50]: Time 5.708502 seconds, bootstrap likelihood -12301.951648, best rearrangement setting 7 Bootstrap[51]: Time 6.096320 seconds, bootstrap likelihood -12667.983926, best rearrangement setting 11 Bootstrap[52]: Time 7.130782 seconds, bootstrap likelihood -12002.957183, best rearrangement setting 12 Bootstrap[53]: Time 5.821300 seconds, bootstrap likelihood -13052.167789, best rearrangement setting 8 Bootstrap[54]: Time 6.750262 seconds, bootstrap likelihood -13297.652392, best rearrangement setting 9 Bootstrap[55]: Time 6.965703 seconds, bootstrap likelihood -13398.022409, best rearrangement setting 11 Bootstrap[56]: Time 6.362201 seconds, bootstrap likelihood -12270.065964, best rearrangement setting 5 Bootstrap[57]: Time 6.209907 seconds, bootstrap likelihood -11619.955221, best rearrangement setting 7 Bootstrap[58]: Time 6.444825 seconds, bootstrap likelihood -14175.709960, best rearrangement setting 10 Bootstrap[59]: Time 7.125777 seconds, bootstrap likelihood -12151.763386, best rearrangement setting 9 Bootstrap[60]: Time 5.853568 seconds, bootstrap likelihood -13104.735251, best rearrangement setting 7 Bootstrap[61]: Time 6.658873 seconds, bootstrap likelihood -13007.341093, best rearrangement setting 5 Bootstrap[62]: Time 7.066682 seconds, bootstrap likelihood -13167.948795, best rearrangement setting 11 Bootstrap[63]: Time 6.266018 seconds, bootstrap likelihood -12219.909611, best rearrangement setting 12 Bootstrap[64]: Time 5.951452 seconds, bootstrap likelihood -13137.754812, best rearrangement setting 7 Bootstrap[65]: Time 5.866451 seconds, bootstrap likelihood -13018.059860, best rearrangement setting 5 Bootstrap[66]: Time 6.392668 seconds, bootstrap likelihood -12095.792101, best rearrangement setting 5 Bootstrap[67]: Time 6.740607 seconds, bootstrap likelihood -12125.601412, best rearrangement setting 15 Bootstrap[68]: Time 6.635028 seconds, bootstrap likelihood -13573.875422, best rearrangement setting 11 Bootstrap[69]: Time 5.875772 seconds, bootstrap likelihood -13510.057011, best rearrangement setting 5 Bootstrap[70]: Time 6.007823 seconds, bootstrap likelihood -13055.906669, best rearrangement setting 8 Bootstrap[71]: Time 7.214173 seconds, bootstrap likelihood -13948.403017, best rearrangement setting 10 Bootstrap[72]: Time 7.395052 seconds, bootstrap likelihood -11788.942288, best rearrangement setting 11 Bootstrap[73]: Time 6.683636 seconds, bootstrap likelihood -13250.156784, best rearrangement setting 9 Bootstrap[74]: Time 6.821868 seconds, bootstrap likelihood -12605.662393, best rearrangement setting 5 Bootstrap[75]: Time 7.317721 seconds, bootstrap likelihood -12475.764244, best rearrangement setting 8 Bootstrap[76]: Time 6.833027 seconds, bootstrap likelihood -13279.032250, best rearrangement setting 9 Bootstrap[77]: Time 7.167207 seconds, bootstrap likelihood -13229.479283, best rearrangement setting 11 Bootstrap[78]: Time 7.749257 seconds, bootstrap likelihood -13299.060661, best rearrangement setting 15 Bootstrap[79]: Time 7.046531 seconds, bootstrap likelihood -13166.420530, best rearrangement setting 9 Bootstrap[80]: Time 7.925564 seconds, bootstrap likelihood -12245.739492, best rearrangement setting 15 Bootstrap[81]: Time 6.241712 seconds, bootstrap likelihood -13243.354200, best rearrangement setting 7 Bootstrap[82]: Time 6.107194 seconds, bootstrap likelihood -12853.387580, best rearrangement setting 6 Bootstrap[83]: Time 6.648001 seconds, bootstrap likelihood -13340.809852, best rearrangement setting 10 Bootstrap[84]: Time 8.045985 seconds, bootstrap likelihood -12573.930206, best rearrangement setting 11 Bootstrap[85]: Time 7.854717 seconds, bootstrap likelihood -12972.459641, best rearrangement setting 8 Bootstrap[86]: Time 6.504200 seconds, bootstrap likelihood -12458.338944, best rearrangement setting 7 Bootstrap[87]: Time 6.208141 seconds, bootstrap likelihood -12862.492031, best rearrangement setting 7 Bootstrap[88]: Time 7.428304 seconds, bootstrap likelihood -14441.632183, best rearrangement setting 12 Bootstrap[89]: Time 7.176737 seconds, bootstrap likelihood -13112.535536, best rearrangement setting 10 Bootstrap[90]: Time 6.356256 seconds, bootstrap likelihood -12806.046044, best rearrangement setting 8 Bootstrap[91]: Time 7.809436 seconds, bootstrap likelihood -13217.497537, best rearrangement setting 12 Bootstrap[92]: Time 6.857535 seconds, bootstrap likelihood -13124.498072, best rearrangement setting 13 Bootstrap[93]: Time 6.527105 seconds, bootstrap likelihood -12232.515568, best rearrangement setting 15 Bootstrap[94]: Time 6.810573 seconds, bootstrap likelihood -12663.393283, best rearrangement setting 5 Bootstrap[95]: Time 6.601915 seconds, bootstrap likelihood -13314.367150, best rearrangement setting 5 Bootstrap[96]: Time 6.605802 seconds, bootstrap likelihood -13647.757021, best rearrangement setting 13 Bootstrap[97]: Time 7.184160 seconds, bootstrap likelihood -11909.712975, best rearrangement setting 11 Bootstrap[98]: Time 5.980510 seconds, bootstrap likelihood -13549.983212, best rearrangement setting 6 Bootstrap[99]: Time 6.897066 seconds, bootstrap likelihood -13671.801069, best rearrangement setting 14 Overall Time for 100 Rapid Bootstraps 670.037447 seconds Average Time per Rapid Bootstrap 6.700374 seconds Starting ML Search ... Fast ML optimization finished Fast ML search Time: 716.134952 seconds Slow ML Search 0 Likelihood: -12956.745546 Slow ML Search 1 Likelihood: -12956.761046 Slow ML Search 2 Likelihood: -12957.235629 Slow ML Search 3 Likelihood: -12956.361654 Slow ML Search 4 Likelihood: -12958.594134 Slow ML Search 5 Likelihood: -12956.576456 Slow ML Search 6 Likelihood: -12958.469319 Slow ML Search 7 Likelihood: -12955.104210 Slow ML Search 8 Likelihood: -12961.434006 Slow ML Search 9 Likelihood: -12959.739556 Slow ML optimization finished Slow ML search Time: 457.152500 seconds Thorough ML search Time: 26.913267 seconds Final ML Optimization Likelihood: -12954.770704 Model Information: Model Parameters of Partition 0, Name: No Name Provided, Type of Data: AA alpha: 0.804940 Tree-Length: 61.308630 rate A <-> R: 0.399182 rate A <-> N: 0.259945 rate A <-> D: 0.371058 rate A <-> C: 2.337364 rate A <-> Q: 0.910775 rate A <-> E: 0.975241 rate A <-> G: 1.940106 rate A <-> H: 0.336984 rate A <-> I: 0.140697 rate A <-> L: 0.371240 rate A <-> K: 0.503815 rate A <-> M: 1.055520 rate A <-> F: 0.238237 rate A <-> P: 1.105868 rate A <-> S: 4.439041 rate A <-> T: 2.009090 rate A <-> W: 0.169702 rate A <-> Y: 0.205613 rate A <-> V: 2.392567 rate R <-> N: 0.706048 rate R <-> D: 0.116398 rate R <-> C: 0.501968 rate R <-> Q: 2.636754 rate R <-> E: 0.341785 rate R <-> G: 0.366408 rate R <-> H: 2.278690 rate R <-> I: 0.119250 rate R <-> L: 0.283449 rate R <-> K: 5.940467 rate R <-> M: 0.454623 rate R <-> F: 0.049508 rate R <-> P: 0.312264 rate R <-> S: 0.805843 rate R <-> T: 0.543695 rate R <-> W: 0.557424 rate R <-> Y: 0.295274 rate R <-> V: 0.160471 rate N <-> D: 4.766737 rate N <-> C: 0.496537 rate N <-> Q: 1.592389 rate N <-> E: 0.508692 rate N <-> G: 1.350015 rate N <-> H: 4.234381 rate N <-> I: 0.179830 rate N <-> L: 0.064256 rate N <-> K: 2.014327 rate N <-> M: 0.348390 rate N <-> F: 0.084068 rate N <-> P: 0.151925 rate N <-> S: 3.764032 rate N <-> T: 1.878729 rate N <-> W: 0.042610 rate N <-> Y: 0.574720 rate N <-> V: 0.078587 rate D <-> C: 0.058743 rate D <-> Q: 0.491483 rate D <-> E: 4.924234 rate D <-> G: 0.793424 rate D <-> H: 0.870603 rate D <-> I: 0.010038 rate D <-> L: 0.014157 rate D <-> K: 0.265711 rate D <-> M: 0.023991 rate D <-> F: 0.016354 rate D <-> P: 0.370412 rate D <-> S: 1.164675 rate D <-> T: 0.399902 rate D <-> W: 0.028068 rate D <-> Y: 0.126872 rate D <-> V: 0.035653 rate C <-> Q: 0.079639 rate C <-> E: 0.003286 rate C <-> G: 0.534566 rate C <-> H: 0.601499 rate C <-> I: 0.301083 rate C <-> L: 0.557800 rate C <-> K: 0.012457 rate C <-> M: 0.839207 rate C <-> F: 1.037881 rate C <-> P: 0.070787 rate C <-> S: 2.614753 rate C <-> T: 1.073780 rate C <-> W: 0.629281 rate C <-> Y: 1.094488 rate C <-> V: 1.839864 rate Q <-> E: 3.876936 rate Q <-> G: 0.251626 rate Q <-> H: 4.520102 rate Q <-> I: 0.068413 rate Q <-> L: 0.546954 rate Q <-> K: 3.037150 rate Q <-> M: 1.570619 rate Q <-> F: 0.033669 rate Q <-> P: 0.586241 rate Q <-> S: 1.149231 rate Q <-> T: 1.014297 rate Q <-> W: 0.221802 rate Q <-> Y: 0.241650 rate Q <-> V: 0.197511 rate E <-> G: 0.327583 rate E <-> H: 0.398044 rate E <-> I: 0.041567 rate E <-> L: 0.065426 rate E <-> K: 1.697022 rate E <-> M: 0.163145 rate E <-> F: 0.017664 rate E <-> P: 0.393844 rate E <-> S: 0.574671 rate E <-> T: 0.567695 rate E <-> W: 0.073107 rate E <-> Y: 0.112720 rate E <-> V: 0.230098 rate G <-> H: 0.292498 rate G <-> I: 0.008174 rate G <-> L: 0.041563 rate G <-> K: 0.278555 rate G <-> M: 0.131033 rate G <-> F: 0.084125 rate G <-> P: 0.184955 rate G <-> S: 1.633930 rate G <-> T: 0.121922 rate G <-> W: 0.252125 rate G <-> Y: 0.051346 rate G <-> V: 0.072026 rate H <-> I: 0.102245 rate H <-> L: 0.343988 rate H <-> K: 0.654763 rate H <-> M: 0.415502 rate H <-> F: 0.640560 rate H <-> P: 0.477834 rate H <-> S: 0.929667 rate H <-> T: 0.548649 rate H <-> W: 0.560661 rate H <-> Y: 4.983361 rate H <-> V: 0.111759 rate I <-> L: 3.892408 rate I <-> K: 0.149373 rate I <-> M: 4.013113 rate I <-> F: 1.044902 rate I <-> P: 0.073509 rate I <-> S: 0.060198 rate I <-> T: 0.970728 rate I <-> W: 0.104854 rate I <-> Y: 0.218350 rate I <-> V: 10.000000 rate L <-> K: 0.129119 rate L <-> M: 5.927594 rate L <-> F: 2.434657 rate L <-> P: 0.233879 rate L <-> S: 0.171176 rate L <-> T: 0.284471 rate L <-> W: 0.581863 rate L <-> Y: 0.281383 rate L <-> V: 1.598956 rate K <-> M: 0.616581 rate K <-> F: 0.022460 rate K <-> P: 0.366530 rate K <-> S: 0.703048 rate K <-> T: 1.067567 rate K <-> W: 0.046864 rate K <-> Y: 0.123890 rate K <-> V: 0.173913 rate M <-> F: 1.689205 rate M <-> P: 0.093763 rate M <-> S: 0.325811 rate M <-> T: 1.897216 rate M <-> W: 0.653740 rate M <-> Y: 0.451968 rate M <-> V: 1.782983 rate F <-> P: 0.088706 rate F <-> S: 0.339765 rate F <-> T: 0.154944 rate F <-> W: 2.307349 rate F <-> Y: 7.328222 rate F <-> V: 0.614777 rate P <-> S: 1.256567 rate P <-> T: 0.536635 rate P <-> W: 0.089332 rate P <-> Y: 0.084151 rate P <-> V: 0.278428 rate S <-> T: 6.077767 rate S <-> W: 0.233693 rate S <-> Y: 0.376132 rate S <-> V: 0.092373 rate T <-> W: 0.132241 rate T <-> Y: 0.230856 rate T <-> V: 2.054781 rate W <-> Y: 2.959699 rate W <-> V: 0.177959 rate Y <-> V: 0.234116 freq pi(A): 0.079060 freq pi(R): 0.055940 freq pi(N): 0.041980 freq pi(D): 0.053050 freq pi(C): 0.012940 freq pi(Q): 0.040770 freq pi(E): 0.071580 freq pi(G): 0.057340 freq pi(H): 0.022350 freq pi(I): 0.062160 freq pi(L): 0.099080 freq pi(K): 0.064600 freq pi(M): 0.022950 freq pi(F): 0.042300 freq pi(P): 0.044040 freq pi(S): 0.061200 freq pi(T): 0.053290 freq pi(W): 0.012070 freq pi(Y): 0.034150 freq pi(V): 0.069150 ML search took 1200.301349 secs or 0.333417 hours Combined Bootstrap and ML search took 1870.339577 secs or 0.519539 hours Drawing Bootstrap Support Values on best-scoring ML tree ... Found 1 tree in File /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bestTree.RAxML-H2A-with-other-lineages.muscle.minCov50 Found 1 tree in File /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bestTree.RAxML-H2A-with-other-lineages.muscle.minCov50 Program execution info written to /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_info.RAxML-H2A-with-other-lineages.muscle.minCov50 All 100 bootstrapped trees written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bootstrap.RAxML-H2A-with-other-lineages.muscle.minCov50 Best-scoring ML tree written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bestTree.RAxML-H2A-with-other-lineages.muscle.minCov50 Best-scoring ML tree with support values written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bipartitions.RAxML-H2A-with-other-lineages.muscle.minCov50 Best-scoring ML tree with support values as branch labels written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bipartitionsBranchLabels.RAxML-H2A-with-other-lineages.muscle.minCov50 Overall execution time for full ML analysis: 1870.404933 secs or 0.519557 hours or 0.021648 days