SAM Tools version 0.1.18 loaded.
OpenMPI libraries (GNU) version 1.6.3 loaded.
GMP arithmetic library version 5.1.1 loaded.
MPFR version 3.1.1 loaded.
Mpc version 1.0.1 loaded.
gcc version 4.9.2 loaded.
R version 3.1.1 loaded
Boost version 1.52.0 loaded.
Sun/Oracle Java SE Development Kit version 1.7.0_51 loaded.
RAxML version 8.0.26 loaded.

RAxML can't, parse the alignment file as phylip file 
it will now try to parse it as FASTA file

IMPORTANT WARNING: Alignment column 438 contains only undetermined values which will be treated as missing data


IMPORTANT WARNING: Sequences Karenia-brevis-CCMP2229-CAMPEP_0188909504 and Karenia-brevis-SP1-CAMPEP_0189087650 are exactly identical


IMPORTANT WARNING: Sequences Karenia-brevis-SP3-CAMPEP_0189258408 and Karenia-brevis-Wilson-CAMPEP_0189424234 are exactly identical


IMPORTANT WARNING: Sequences Paramecium-caudatum-PCAUDG02994 and Paramecium-caudatum-PCAUDG10616 are exactly identical


IMPORTANT WARNING: Sequences Karenia-brevis-CCMP2229-CAMPEP_0188903032 and Karenia-brevis-SP1-CAMPEP_0189015932 are exactly identical


IMPORTANT WARNING: Sequences Karenia-brevis-CCMP2229-CAMPEP_0188903032 and Karenia-brevis-SP3-CAMPEP_0189192184 are exactly identical

IMPORTANT WARNING
Found 5 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.


IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates and undetermined columns removed is printed to file /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/H2A-variants/H2A-with-other-lineages-more-H2A.Z.muscle.fa.reduced

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 3

This is RAxML Worker Pthread Number: 4

This is RAxML Worker Pthread Number: 5

This is RAxML Worker Pthread Number: 6

This is RAxML Worker Pthread Number: 7

This is RAxML Worker Pthread Number: 8

This is RAxML Worker Pthread Number: 9

This is RAxML Worker Pthread Number: 10

This is RAxML Worker Pthread Number: 12

This is RAxML Worker Pthread Number: 11

This is RAxML Worker Pthread Number: 13

This is RAxML Worker Pthread Number: 14

This is RAxML Worker Pthread Number: 15


This is RAxML version 8.1.3 released by Alexandros Stamatakis on August 13 2014.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)

Alignment has 711 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 76.92%

RAxML rapid bootstrapping and subsequent ML search

Using 1 distinct models/data partitions with joint branch length optimization



Executing 100 rapid bootstrap inferences and thereafter a thorough ML search 

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter

GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Alignment Patterns: 711
Name: No Name Provided
DataType: AA
Substitution Matrix: LG
Using fixed base frequencies




RAxML was called as follows:

raxml -f a -s /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/H2A-variants/H2A-with-other-lineages-more-H2A.Z.muscle.fa -n RAxML-H2A-with-other-lineages-more-H2A.Z.muscle -m PROTGAMMALG -T 16 -p 12345 -N 100 -x 12345 



Time for BS model parameter optimization 1.062875
Bootstrap[0]: Time 21.517374 seconds, bootstrap likelihood -26997.193403, best rearrangement setting 13
Bootstrap[1]: Time 20.557766 seconds, bootstrap likelihood -27161.413718, best rearrangement setting 13
Bootstrap[2]: Time 22.608796 seconds, bootstrap likelihood -24373.795212, best rearrangement setting 12
Bootstrap[3]: Time 21.766473 seconds, bootstrap likelihood -27757.589881, best rearrangement setting 15
Bootstrap[4]: Time 19.631697 seconds, bootstrap likelihood -26785.742810, best rearrangement setting 10
Bootstrap[5]: Time 22.920691 seconds, bootstrap likelihood -25574.400272, best rearrangement setting 10
Bootstrap[6]: Time 19.785516 seconds, bootstrap likelihood -25081.470591, best rearrangement setting 6
Bootstrap[7]: Time 20.054302 seconds, bootstrap likelihood -25397.110561, best rearrangement setting 14
Bootstrap[8]: Time 16.706562 seconds, bootstrap likelihood -23808.346125, best rearrangement setting 5
Bootstrap[9]: Time 18.749939 seconds, bootstrap likelihood -26975.353611, best rearrangement setting 7
Bootstrap[10]: Time 19.330588 seconds, bootstrap likelihood -24451.155239, best rearrangement setting 7
Bootstrap[11]: Time 18.200158 seconds, bootstrap likelihood -26314.111317, best rearrangement setting 5
Bootstrap[12]: Time 18.362624 seconds, bootstrap likelihood -25410.286535, best rearrangement setting 8
Bootstrap[13]: Time 19.442856 seconds, bootstrap likelihood -25109.230300, best rearrangement setting 7
Bootstrap[14]: Time 19.917470 seconds, bootstrap likelihood -23914.861152, best rearrangement setting 12
Bootstrap[15]: Time 20.658971 seconds, bootstrap likelihood -24917.538672, best rearrangement setting 15
Bootstrap[16]: Time 21.199548 seconds, bootstrap likelihood -25292.685671, best rearrangement setting 12
Bootstrap[17]: Time 21.242686 seconds, bootstrap likelihood -26017.180674, best rearrangement setting 12
Bootstrap[18]: Time 17.294915 seconds, bootstrap likelihood -26031.869520, best rearrangement setting 5
Bootstrap[19]: Time 18.617463 seconds, bootstrap likelihood -28119.259649, best rearrangement setting 8
Bootstrap[20]: Time 18.949650 seconds, bootstrap likelihood -27283.518990, best rearrangement setting 10
Bootstrap[21]: Time 17.731593 seconds, bootstrap likelihood -24391.940535, best rearrangement setting 6
Bootstrap[22]: Time 17.419451 seconds, bootstrap likelihood -25731.856175, best rearrangement setting 5
Bootstrap[23]: Time 20.940626 seconds, bootstrap likelihood -26571.007627, best rearrangement setting 7
Bootstrap[24]: Time 18.708334 seconds, bootstrap likelihood -26618.304325, best rearrangement setting 8
Bootstrap[25]: Time 19.458275 seconds, bootstrap likelihood -26868.703919, best rearrangement setting 6
Bootstrap[26]: Time 21.573629 seconds, bootstrap likelihood -26239.060839, best rearrangement setting 12
Bootstrap[27]: Time 16.666926 seconds, bootstrap likelihood -25951.321991, best rearrangement setting 10
Bootstrap[28]: Time 19.623397 seconds, bootstrap likelihood -24636.753603, best rearrangement setting 11
Bootstrap[29]: Time 19.833501 seconds, bootstrap likelihood -25902.702363, best rearrangement setting 12
Bootstrap[30]: Time 24.049071 seconds, bootstrap likelihood -25895.834532, best rearrangement setting 15
Bootstrap[31]: Time 25.438118 seconds, bootstrap likelihood -26030.397940, best rearrangement setting 15
Bootstrap[32]: Time 16.848839 seconds, bootstrap likelihood -27440.226355, best rearrangement setting 6
Bootstrap[33]: Time 22.570996 seconds, bootstrap likelihood -25904.657564, best rearrangement setting 15
Bootstrap[34]: Time 19.246291 seconds, bootstrap likelihood -28526.791978, best rearrangement setting 11
Bootstrap[35]: Time 18.044311 seconds, bootstrap likelihood -27774.182311, best rearrangement setting 8
Bootstrap[36]: Time 20.798935 seconds, bootstrap likelihood -26584.451414, best rearrangement setting 9
Bootstrap[37]: Time 23.092730 seconds, bootstrap likelihood -28365.320938, best rearrangement setting 11
Bootstrap[38]: Time 21.270086 seconds, bootstrap likelihood -26087.931195, best rearrangement setting 8
Bootstrap[39]: Time 23.988491 seconds, bootstrap likelihood -25192.379464, best rearrangement setting 13
Bootstrap[40]: Time 22.841116 seconds, bootstrap likelihood -25909.709119, best rearrangement setting 13
Bootstrap[41]: Time 19.185993 seconds, bootstrap likelihood -25963.262489, best rearrangement setting 10
Bootstrap[42]: Time 16.655292 seconds, bootstrap likelihood -24653.230069, best rearrangement setting 5
Bootstrap[43]: Time 22.115387 seconds, bootstrap likelihood -28288.616968, best rearrangement setting 14
Bootstrap[44]: Time 21.236780 seconds, bootstrap likelihood -25290.626442, best rearrangement setting 10
Bootstrap[45]: Time 22.392237 seconds, bootstrap likelihood -26112.706706, best rearrangement setting 15
Bootstrap[46]: Time 20.402132 seconds, bootstrap likelihood -24542.754568, best rearrangement setting 14
Bootstrap[47]: Time 18.984541 seconds, bootstrap likelihood -25160.430223, best rearrangement setting 8
Bootstrap[48]: Time 19.109085 seconds, bootstrap likelihood -27792.448641, best rearrangement setting 6
Bootstrap[49]: Time 20.523373 seconds, bootstrap likelihood -28251.207442, best rearrangement setting 7
Bootstrap[50]: Time 20.231789 seconds, bootstrap likelihood -28116.537436, best rearrangement setting 7
Bootstrap[51]: Time 21.262177 seconds, bootstrap likelihood -26461.074374, best rearrangement setting 11
Bootstrap[52]: Time 20.560382 seconds, bootstrap likelihood -29704.138974, best rearrangement setting 12
Bootstrap[53]: Time 19.120804 seconds, bootstrap likelihood -26904.376201, best rearrangement setting 8
Bootstrap[54]: Time 21.052704 seconds, bootstrap likelihood -24811.022390, best rearrangement setting 9
Bootstrap[55]: Time 21.111689 seconds, bootstrap likelihood -25782.705030, best rearrangement setting 11
Bootstrap[56]: Time 17.489533 seconds, bootstrap likelihood -27140.893899, best rearrangement setting 5
Bootstrap[57]: Time 20.334546 seconds, bootstrap likelihood -26439.076308, best rearrangement setting 7
Bootstrap[58]: Time 18.229467 seconds, bootstrap likelihood -25760.304787, best rearrangement setting 10
Bootstrap[59]: Time 18.433104 seconds, bootstrap likelihood -27722.469735, best rearrangement setting 9
Bootstrap[60]: Time 17.812357 seconds, bootstrap likelihood -25363.618850, best rearrangement setting 7
Bootstrap[61]: Time 18.583002 seconds, bootstrap likelihood -24837.518830, best rearrangement setting 5
Bootstrap[62]: Time 21.645050 seconds, bootstrap likelihood -25687.055278, best rearrangement setting 11
Bootstrap[63]: Time 22.013139 seconds, bootstrap likelihood -25223.585385, best rearrangement setting 12
Bootstrap[64]: Time 20.914999 seconds, bootstrap likelihood -25503.166099, best rearrangement setting 7
Bootstrap[65]: Time 18.257532 seconds, bootstrap likelihood -27732.364438, best rearrangement setting 5
Bootstrap[66]: Time 17.163341 seconds, bootstrap likelihood -26372.308820, best rearrangement setting 5
Bootstrap[67]: Time 23.246938 seconds, bootstrap likelihood -24616.972553, best rearrangement setting 15
Bootstrap[68]: Time 17.800273 seconds, bootstrap likelihood -24775.024823, best rearrangement setting 11
Bootstrap[69]: Time 16.420013 seconds, bootstrap likelihood -28082.238172, best rearrangement setting 5
Bootstrap[70]: Time 20.808592 seconds, bootstrap likelihood -26975.738394, best rearrangement setting 8
Bootstrap[71]: Time 17.994259 seconds, bootstrap likelihood -26343.737457, best rearrangement setting 10
Bootstrap[72]: Time 20.753954 seconds, bootstrap likelihood -24871.530217, best rearrangement setting 11
Bootstrap[73]: Time 20.499556 seconds, bootstrap likelihood -27481.922007, best rearrangement setting 9
Bootstrap[74]: Time 18.708949 seconds, bootstrap likelihood -26681.057314, best rearrangement setting 5
Bootstrap[75]: Time 20.686693 seconds, bootstrap likelihood -23899.476370, best rearrangement setting 8
Bootstrap[76]: Time 23.222036 seconds, bootstrap likelihood -28178.830363, best rearrangement setting 9
Bootstrap[77]: Time 21.023761 seconds, bootstrap likelihood -26713.308601, best rearrangement setting 11
Bootstrap[78]: Time 20.871828 seconds, bootstrap likelihood -23503.145616, best rearrangement setting 15
Bootstrap[79]: Time 20.127649 seconds, bootstrap likelihood -27264.516365, best rearrangement setting 9
Bootstrap[80]: Time 23.143385 seconds, bootstrap likelihood -27564.413205, best rearrangement setting 15
Bootstrap[81]: Time 20.063077 seconds, bootstrap likelihood -26141.198368, best rearrangement setting 7
Bootstrap[82]: Time 18.186800 seconds, bootstrap likelihood -26237.766736, best rearrangement setting 6
Bootstrap[83]: Time 19.679607 seconds, bootstrap likelihood -25738.166960, best rearrangement setting 10
Bootstrap[84]: Time 24.639853 seconds, bootstrap likelihood -25153.938720, best rearrangement setting 11
Bootstrap[85]: Time 17.764459 seconds, bootstrap likelihood -25648.391110, best rearrangement setting 8
Bootstrap[86]: Time 18.192223 seconds, bootstrap likelihood -27325.466822, best rearrangement setting 7
Bootstrap[87]: Time 18.525258 seconds, bootstrap likelihood -27002.315212, best rearrangement setting 7
Bootstrap[88]: Time 20.680988 seconds, bootstrap likelihood -26227.067097, best rearrangement setting 12
Bootstrap[89]: Time 20.259132 seconds, bootstrap likelihood -26781.705397, best rearrangement setting 10
Bootstrap[90]: Time 20.662200 seconds, bootstrap likelihood -24222.561992, best rearrangement setting 8
Bootstrap[91]: Time 21.562261 seconds, bootstrap likelihood -25931.222184, best rearrangement setting 12
Bootstrap[92]: Time 21.634692 seconds, bootstrap likelihood -25872.100727, best rearrangement setting 13
Bootstrap[93]: Time 20.827941 seconds, bootstrap likelihood -27484.630175, best rearrangement setting 15
Bootstrap[94]: Time 18.561081 seconds, bootstrap likelihood -24417.191999, best rearrangement setting 5
Bootstrap[95]: Time 17.355822 seconds, bootstrap likelihood -26814.766310, best rearrangement setting 5
Bootstrap[96]: Time 21.558149 seconds, bootstrap likelihood -27538.830442, best rearrangement setting 13
Bootstrap[97]: Time 23.211326 seconds, bootstrap likelihood -24552.016082, best rearrangement setting 11
Bootstrap[98]: Time 19.280696 seconds, bootstrap likelihood -27381.908401, best rearrangement setting 6
Bootstrap[99]: Time 23.336346 seconds, bootstrap likelihood -28903.703107, best rearrangement setting 14


Overall Time for 100 Rapid Bootstraps 2013.949083 seconds
Average Time per Rapid Bootstrap 20.139491 seconds

Starting ML Search ...

Fast ML optimization finished

Fast ML search Time: 2599.168297 seconds

Slow ML Search 0 Likelihood: -26436.639737
Slow ML Search 1 Likelihood: -26437.952680
Slow ML Search 2 Likelihood: -26439.052998
Slow ML Search 3 Likelihood: -26442.269880
Slow ML Search 4 Likelihood: -26441.177758
Slow ML Search 5 Likelihood: -26442.330632
Slow ML Search 6 Likelihood: -26442.214649
Slow ML Search 7 Likelihood: -26446.140841
Slow ML Search 8 Likelihood: -26443.085883
Slow ML Search 9 Likelihood: -26447.582292
Slow ML optimization finished

Slow ML search Time: 1382.628432 seconds
Thorough ML search Time: 77.807820 seconds

Final ML Optimization Likelihood: -26436.646667

Model Information:

Model Parameters of Partition 0, Name: No Name Provided, Type of Data: AA
alpha: 0.686674
Tree-Length: 146.622876
rate A <-> R: 0.399182
rate A <-> N: 0.259945
rate A <-> D: 0.371058
rate A <-> C: 2.337364
rate A <-> Q: 0.910775
rate A <-> E: 0.975241
rate A <-> G: 1.940106
rate A <-> H: 0.336984
rate A <-> I: 0.140697
rate A <-> L: 0.371240
rate A <-> K: 0.503815
rate A <-> M: 1.055520
rate A <-> F: 0.238237
rate A <-> P: 1.105868
rate A <-> S: 4.439041
rate A <-> T: 2.009090
rate A <-> W: 0.169702
rate A <-> Y: 0.205613
rate A <-> V: 2.392567
rate R <-> N: 0.706048
rate R <-> D: 0.116398
rate R <-> C: 0.501968
rate R <-> Q: 2.636754
rate R <-> E: 0.341785
rate R <-> G: 0.366408
rate R <-> H: 2.278690
rate R <-> I: 0.119250
rate R <-> L: 0.283449
rate R <-> K: 5.940467
rate R <-> M: 0.454623
rate R <-> F: 0.049508
rate R <-> P: 0.312264
rate R <-> S: 0.805843
rate R <-> T: 0.543695
rate R <-> W: 0.557424
rate R <-> Y: 0.295274
rate R <-> V: 0.160471
rate N <-> D: 4.766737
rate N <-> C: 0.496537
rate N <-> Q: 1.592389
rate N <-> E: 0.508692
rate N <-> G: 1.350015
rate N <-> H: 4.234381
rate N <-> I: 0.179830
rate N <-> L: 0.064256
rate N <-> K: 2.014327
rate N <-> M: 0.348390
rate N <-> F: 0.084068
rate N <-> P: 0.151925
rate N <-> S: 3.764032
rate N <-> T: 1.878729
rate N <-> W: 0.042610
rate N <-> Y: 0.574720
rate N <-> V: 0.078587
rate D <-> C: 0.058743
rate D <-> Q: 0.491483
rate D <-> E: 4.924234
rate D <-> G: 0.793424
rate D <-> H: 0.870603
rate D <-> I: 0.010038
rate D <-> L: 0.014157
rate D <-> K: 0.265711
rate D <-> M: 0.023991
rate D <-> F: 0.016354
rate D <-> P: 0.370412
rate D <-> S: 1.164675
rate D <-> T: 0.399902
rate D <-> W: 0.028068
rate D <-> Y: 0.126872
rate D <-> V: 0.035653
rate C <-> Q: 0.079639
rate C <-> E: 0.003286
rate C <-> G: 0.534566
rate C <-> H: 0.601499
rate C <-> I: 0.301083
rate C <-> L: 0.557800
rate C <-> K: 0.012457
rate C <-> M: 0.839207
rate C <-> F: 1.037881
rate C <-> P: 0.070787
rate C <-> S: 2.614753
rate C <-> T: 1.073780
rate C <-> W: 0.629281
rate C <-> Y: 1.094488
rate C <-> V: 1.839864
rate Q <-> E: 3.876936
rate Q <-> G: 0.251626
rate Q <-> H: 4.520102
rate Q <-> I: 0.068413
rate Q <-> L: 0.546954
rate Q <-> K: 3.037150
rate Q <-> M: 1.570619
rate Q <-> F: 0.033669
rate Q <-> P: 0.586241
rate Q <-> S: 1.149231
rate Q <-> T: 1.014297
rate Q <-> W: 0.221802
rate Q <-> Y: 0.241650
rate Q <-> V: 0.197511
rate E <-> G: 0.327583
rate E <-> H: 0.398044
rate E <-> I: 0.041567
rate E <-> L: 0.065426
rate E <-> K: 1.697022
rate E <-> M: 0.163145
rate E <-> F: 0.017664
rate E <-> P: 0.393844
rate E <-> S: 0.574671
rate E <-> T: 0.567695
rate E <-> W: 0.073107
rate E <-> Y: 0.112720
rate E <-> V: 0.230098
rate G <-> H: 0.292498
rate G <-> I: 0.008174
rate G <-> L: 0.041563
rate G <-> K: 0.278555
rate G <-> M: 0.131033
rate G <-> F: 0.084125
rate G <-> P: 0.184955
rate G <-> S: 1.633930
rate G <-> T: 0.121922
rate G <-> W: 0.252125
rate G <-> Y: 0.051346
rate G <-> V: 0.072026
rate H <-> I: 0.102245
rate H <-> L: 0.343988
rate H <-> K: 0.654763
rate H <-> M: 0.415502
rate H <-> F: 0.640560
rate H <-> P: 0.477834
rate H <-> S: 0.929667
rate H <-> T: 0.548649
rate H <-> W: 0.560661
rate H <-> Y: 4.983361
rate H <-> V: 0.111759
rate I <-> L: 3.892408
rate I <-> K: 0.149373
rate I <-> M: 4.013113
rate I <-> F: 1.044902
rate I <-> P: 0.073509
rate I <-> S: 0.060198
rate I <-> T: 0.970728
rate I <-> W: 0.104854
rate I <-> Y: 0.218350
rate I <-> V: 10.000000
rate L <-> K: 0.129119
rate L <-> M: 5.927594
rate L <-> F: 2.434657
rate L <-> P: 0.233879
rate L <-> S: 0.171176
rate L <-> T: 0.284471
rate L <-> W: 0.581863
rate L <-> Y: 0.281383
rate L <-> V: 1.598956
rate K <-> M: 0.616581
rate K <-> F: 0.022460
rate K <-> P: 0.366530
rate K <-> S: 0.703048
rate K <-> T: 1.067567
rate K <-> W: 0.046864
rate K <-> Y: 0.123890
rate K <-> V: 0.173913
rate M <-> F: 1.689205
rate M <-> P: 0.093763
rate M <-> S: 0.325811
rate M <-> T: 1.897216
rate M <-> W: 0.653740
rate M <-> Y: 0.451968
rate M <-> V: 1.782983
rate F <-> P: 0.088706
rate F <-> S: 0.339765
rate F <-> T: 0.154944
rate F <-> W: 2.307349
rate F <-> Y: 7.328222
rate F <-> V: 0.614777
rate P <-> S: 1.256567
rate P <-> T: 0.536635
rate P <-> W: 0.089332
rate P <-> Y: 0.084151
rate P <-> V: 0.278428
rate S <-> T: 6.077767
rate S <-> W: 0.233693
rate S <-> Y: 0.376132
rate S <-> V: 0.092373
rate T <-> W: 0.132241
rate T <-> Y: 0.230856
rate T <-> V: 2.054781
rate W <-> Y: 2.959699
rate W <-> V: 0.177959
rate Y <-> V: 0.234116

freq pi(A): 0.079060
freq pi(R): 0.055940
freq pi(N): 0.041980
freq pi(D): 0.053050
freq pi(C): 0.012940
freq pi(Q): 0.040770
freq pi(E): 0.071580
freq pi(G): 0.057340
freq pi(H): 0.022350
freq pi(I): 0.062160
freq pi(L): 0.099080
freq pi(K): 0.064600
freq pi(M): 0.022950
freq pi(F): 0.042300
freq pi(P): 0.044040
freq pi(S): 0.061200
freq pi(T): 0.053290
freq pi(W): 0.012070
freq pi(Y): 0.034150
freq pi(V): 0.069150


ML search took 4059.729881 secs or 1.127703 hours

Combined Bootstrap and ML search took 6073.680142 secs or 1.687133 hours

Drawing Bootstrap Support Values on best-scoring ML tree ...



Found 1 tree in File /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bestTree.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle



Found 1 tree in File /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bestTree.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle

Program execution info written to /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_info.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle
All 100 bootstrapped trees written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bootstrap.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle

Best-scoring ML tree written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bestTree.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle

Best-scoring ML tree with support values written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bipartitions.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle

Best-scoring ML tree with support values as branch labels written to: /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-07-10-final-analysis/RAxML/RAxML_bipartitionsBranchLabels.RAxML-H2A-with-other-lineages-more-H2A.Z.muscle

Overall execution time for full ML analysis: 6073.832120 secs or 1.687176 hours or 0.070299 days