585 477 0 0 0 chrY 95 148 -15902407 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 585 3001 210 22 28 chrY 283 1198 -15901357 + L1_Mur3 LINE L1 1060 1980 -3900 2 585 279 244 72 12 chrY 1354 1437 -15901118 - B4A SINE B4 -201 91 4 3 585 5849 180 62 35 chrY 1918 3584 -15898971 + Lx2B LINE L1 5316 6998 -2 4 585 1703 92 8 23 chrY 3781 4037 -15898518 - L1_Mus1 LINE L1 0 6567 6316 5 585 236 228 48 48 chrY 4096 4179 -15898376 + L1M2 LINE L1 2224 2306 -4543 6 585 3126 199 60 40 chrY 4182 4978 -15897577 + Lx9 LINE L1 6827 7638 -6 7 585 3923 50 81 2 chrY 6018 6515 -15896040 + L1_Mus2 LINE L1 6029 6564 -2 8 585 215 238 0 16 chrY 7801 7865 -15894690 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 585 234 0 0 0 chrY 8336 8362 -15894193 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 585 497 287 18 12 chrY 8607 8776 -15893779 - Lx9 LINE L1 -173 7471 7302 1 585 9144 192 105 77 chrY 8825 12218 -15890337 + L1_Mur3 LINE L1 279 3778 -2102 1 585 283 259 24 0 chrY 12259 12344 -15890211 + Lx7 LINE L1 6089 6175 -1521 1 585 230 180 16 0 chrY 12369 12430 -15890125 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 585 3966 216 27 40 chrY 12475 13378 -15889177 + Lx6 LINE L1 6189 7079 -381 1 585 1425 135 60 35 chrY 13380 13695 -15888860 + RLTR15 LTR ERVK 37 359 0 1 585 265 281 56 0 chrY 13975 14064 -15888491 + PB1D10 SINE Alu 17 110 -7 1 585 805 103 173 0 chrY 14298 14454 -15888101 + B2_Mm1t SINE B2 7 189 -4 1 585 186 43 0 0 chrY 14454 14477 -15888078 + (TAG)n Simple_repeat Simple_repeat 2 24 0 1 585 4955 131 48 26 chrY 14653 15537 -15887018 + Lx2 LINE L1 6095 6997 0 2 585 858 196 43 21 chrY 15767 15955 -15886600 + Lx9 LINE L1 6832 7023 -621 2 585 999 103 0 0 chrY 16232 16368 -15886187 + B1_Mus2 SINE Alu 2 137 -10 2 585 441 0 0 0 chrY 16368 16417 -15886138 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 585 231 326 21 14 chrY 16770 16913 -15885642 + L1MB2 LINE L1 5910 6053 -118 2 585 198 0 0 0 chrY 18821 18843 -15883712 + (CAT)n Simple_repeat Simple_repeat 1 22 0 2 585 198 0 0 0 chrY 19380 19402 -15883153 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2 585 227 225 27 40 chrY 19713 19787 -15882768 - MIRb SINE MIR -82 186 114 2 585 38648 42 0 3 chrY 20330 26511 -15876044 - L1Md_T LINE L1 0 6585 323 2 585 1965 91 38 59 chrY 26513 26852 -15875703 - IAPLTR1a_Mm LTR ERVK -5 332 1 2 585 15424 41 3 1 chrY 26852 28652 -15873903 - IAPEz-int LTR ERVK 0 6481 4678 2 585 1934 85 0 0 chrY 28670 28916 -15873639 - IAPEz-int LTR ERVK -5183 2497 2252 3 585 12189 32 23 19 chrY 28917 30383 -15872172 - IAPEz-int LTR ERVK -5004 1477 6 3 585 1892 107 38 59 chrY 30383 30722 -15871833 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 585 1639 109 0 11 chrY 30722 30982 -15871573 - L1Md_T LINE L1 -6193 329 73 2 585 290 294 153 48 chrY 31264 31453 -15871102 - Lx7 LINE L1 -403 7293 7085 3 585 484 108 0 0 chrY 31911 31985 -15870570 + B1_Mus2 SINE Alu 72 145 -2 3 585 1028 162 16 16 chrY 32460 32648 -15869907 + B2_Mm2 SINE B2 2 189 -6 3 585 27227 72 7 3 chrY 32649 34399 -15868156 + L1Md_F LINE L1 596 2349 -3534 3 585 257 0 30 0 chrY 34399 34432 -15868123 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 585 27227 78 10 3 chrY 34432 35544 -15867011 + L1Md_F LINE L1 2350 3466 -2417 3 585 216 0 0 0 chrY 35544 35568 -15866987 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 585 27227 78 10 3 chrY 35568 37027 -15865528 + L1Md_F LINE L1 3467 4941 -942 3 585 3749 79 6 57 chrY 37091 37631 -15864924 + RLTR1B LTR ERV1 1 512 0 3 585 293 140 0 0 chrY 38000 38050 -15864505 + RLTR1 LTR ERV1 426 475 -149 3 585 343 224 8 101 chrY 38123 38252 -15864303 + RLTR5_Mm LTR ERV1 1 117 -537 3 585 743 170 105 86 chrY 38312 38614 -15863941 + RLTR5_Mm LTR ERV1 288 628 0 3 585 4907 255 18 15 chrY 38615 39915 -15862640 + MURVY-int LTR ERV1 7 1309 -6143 3 585 339 241 8 87 chrY 40037 40164 -15862391 - RLTR6_Mm LTR ERV1 -537 117 1 4 585 293 140 0 0 chrY 40237 40287 -15862268 - RLTR1 LTR ERV1 -149 475 426 4 585 4262 19 0 0 chrY 40412 40886 -15861669 - MERVL-int LTR ERVL -3556 1929 1456 4 585 2185 86 21 0 chrY 40888 41213 -15861342 - IAPLTR1a_Mm LTR ERVK -5 332 1 4 585 1091 8 0 0 chrY 41213 41332 -15861223 - MERVL-int LTR ERVL -4024 1461 1343 4 585 3388 12 0 0 chrY 41332 41742 -15860813 - MT2_Mm LTR ERVL -83 410 1 4 585 3605 141 16 17 chrY 41744 42323 -15860232 - Lx4A LINE L1 -219 6839 6262 4 585 1837 119 283 43 chrY 42370 42808 -15859747 - RLTR6_Mm LTR ERV1 -68 586 44 4 585 268 194 209 0 chrY 42848 42915 -15859640 - RLTR6_Mm LTR ERV1 -573 81 1 4 585 33093 36 4 0 chrY 42915 46713 -15855842 - RLTR6-int LTR ERV1 0 7778 3966 4 585 3534 152 34 29 chrY 46715 47364 -15855191 - Lx2 LINE L1 -238 6759 6108 4 585 1099 147 60 0 chrY 47561 47745 -15854810 - B2_Mm2 SINE B2 0 195 1 4 585 266 264 68 11 chrY 47948 48036 -15854519 - PB1D10 SINE Alu -8 109 17 4 585 1494 137 54 35 chrY 48310 48627 -15853928 - RLTR15 LTR ERVK 0 359 37 5 585 3619 222 42 43 chrY 48629 49521 -15853034 - Lx6 LINE L1 -381 7079 6189 5 585 221 210 16 0 chrY 49562 49624 -15852931 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 585 6353 183 67 105 chrY 49769 51764 -15850791 - L1_Mur3 LINE L1 -2102 3778 1860 5 585 19526 73 278 5 chrY 51764 55852 -15846703 + L1Md_F2 LINE L1 387 5586 -297 5 585 8057 56 2 2 chrY 55852 56848 -15845707 + L1Md_F2 LINE L1 5587 6582 0 5 585 1103 70 0 14 chrY 57201 57347 -15845208 + B1_Mus1 SINE Alu 2 145 -3 5 585 243 0 0 0 chrY 57347 57374 -15845181 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 585 443 241 68 47 chrY 57551 57699 -15844856 + B3 SINE B2 6 156 -60 5 585 317 152 0 0 chrY 57749 57795 -15844760 + RLTR28 LTR ERVL 1 46 -435 5 585 2308 188 73 17 chrY 57802 58284 -15844271 + RLTR28 LTR ERVL 16 524 0 5 585 1574 181 83 107 chrY 58364 58811 -15843744 + RMER10A LTR ERVL 7 442 0 5 585 225 315 19 0 chrY 59270 59324 -15843231 + RSINE1 SINE B4 66 120 -45 6 585 667 134 0 26 chrY 59326 59429 -15843126 + B1_Mus1 SINE Alu 37 139 -9 6 585 189 74 0 0 chrY 59429 59456 -15843099 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 585 667 134 0 26 chrY 59456 59467 -15843088 + B1_Mus1 SINE Alu 140 148 0 6 585 235 224 16 79 chrY 59510 59573 -15842982 + RSINE1 SINE B4 107 165 0 6 585 327 167 0 0 chrY 59573 59639 -15842916 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 585 26 30 0 0 chrY 60093 60126 -15842429 + AT_rich Low_complexity Low_complexity 1 33 0 6 585 214 304 0 0 chrY 63665 63721 -15838834 + B1F SINE Alu 47 102 -47 6 585 4865 89 22 14 chrY 64567 65259 -15837296 - L1Md_F2 LINE L1 -14 6568 5872 6 585 1308 49 0 0 chrY 65261 65425 -15837130 + L1_Mm LINE L1 4717 4880 -1003 6 585 1030 277 166 31 chrY 65461 65942 -15836613 + RMER15 LTR ERVL 29 574 -1 6 585 278 333 11 114 chrY 66376 66464 -15836091 - B1F1 SINE Alu -43 84 6 6 585 262 354 0 0 chrY 66409 66474 -15836081 - B4A SINE B4 -147 145 81 7 585 26 30 0 0 chrY 66474 66507 -15836048 + AT_rich Low_complexity Low_complexity 1 33 0 7 585 1069 110 0 0 chrY 66512 66658 -15835897 - B1_Mus2 SINE Alu -1 146 1 7 585 7909 151 61 15 chrY 66697 69141 -15833414 + Lx2 LINE L1 4426 6990 -7 7 585 192 77 0 0 chrY 69155 69181 -15833374 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 585 4238 64 14 0 chrY 69526 70113 -15832442 - L1Md_F2 LINE L1 -664 5918 5325 7 585 5086 90 11 4 chrY 70113 70816 -15831739 + L1Md_F2 LINE L1 5863 6570 -12 7 585 347 306 18 104 chrY 70948 71112 -15831443 + B4 SINE B4 70 219 -73 7 585 658 215 14 43 chrY 70975 71116 -15831439 + B1_Mur1 SINE Alu 10 146 -3 7 585 1005 58 64 28 chrY 71121 71262 -15831293 + B1_Mus2 SINE Alu 2 147 0 7 585 312 27 0 0 chrY 71289 71326 -15831229 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 585 202 217 24 24 chrY 71357 71442 -15831113 + (TA)n Simple_repeat Simple_repeat 1 85 0 8 585 492 232 104 0 chrY 71912 72037 -15830518 + B3A SINE B2 22 159 -39 8 585 450 0 0 0 chrY 72047 72097 -15830458 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 585 351 59 57 29 chrY 72113 72183 -15830372 + (TCTCTG)n Simple_repeat Simple_repeat 1 72 0 8 585 502 311 67 11 chrY 72643 72822 -15829733 + ID_B1 SINE B4 8 196 -28 8 585 227 276 129 8 chrY 72720 72844 -15829711 + B1F SINE Alu 10 148 -1 8 585 530 292 174 0 chrY 73038 73216 -15829339 - B3 SINE B2 -7 209 1 8 585 1004 116 0 0 chrY 73372 73519 -15829036 - B1_Mus1 SINE Alu 0 148 2 8 585 258 242 56 16 chrY 73567 73693 -15828862 + (TA)n Simple_repeat Simple_repeat 2 132 0 8 585 250 208 195 65 chrY 73708 73785 -15828770 + B3 SINE B2 117 203 -13 8 585 253 311 40 0 chrY 73832 73906 -15828649 - ID2 SINE ID -5 78 2 9 585 1540 177 43 12 chrY 74243 74595 -15827960 + MTC LTR MaLR 7 413 -8 9 585 383 271 73 0 chrY 74670 74766 -15827789 + B4A SINE B4 144 246 -46 9 585 240 363 117 10 chrY 74882 74985 -15827570 + PB1D10 SINE Alu 4 117 0 9 585 288 0 0 0 chrY 75676 75708 -15826847 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 585 973 172 24 14 chrY 76451 76658 -15825897 + Lx2B LINE L1 4266 4474 -1403 9 585 6362 166 75 45 chrY 77092 77748 -15824807 + Lx2B LINE L1 4469 5119 -758 9 585 1227 34 0 0 chrY 77748 77895 -15824660 + B1_Mm SINE Alu 1 147 0 9 585 6362 163 45 24 chrY 77895 79062 -15823493 + Lx2B LINE L1 5120 6344 -656 9 585 383 269 118 7 chrY 79120 79255 -15823300 + MIRc SINE MIR 88 237 -31 9 585 276 321 65 65 chrY 80050 80250 -15822305 + MLT1E2 LTR MaLR 23 222 -405 9 585 268 286 25 8 chrY 80376 80496 -15822059 + Lx7 LINE L1 7311 7432 -264 9 585 27 62 0 0 chrY 80649 80697 -15821858 + AT_rich Low_complexity Low_complexity 1 48 0 1 585 520 317 48 24 chrY 80739 80904 -15821651 + B4 SINE B4 116 284 -8 1 585 33020 69 9 16 chrY 81112 86168 -15816387 + L1Md_F2 LINE L1 569 5586 -297 1 585 8047 52 0 0 chrY 86168 87152 -15815403 + L1Md_F2 LINE L1 5587 6570 -12 1 585 37900 12 0 7 chrY 88754 94169 -15808386 + L1Md_A LINE L1 214 5586 -297 1 585 8910 9 0 0 chrY 94169 95165 -15807390 + L1Md_A LINE L1 5587 6582 0 1 585 324 238 60 0 chrY 95253 95421 -15807134 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 585 298 266 96 0 chrY 95421 95515 -15807040 + MLT1E2 LTR MaLR 73 175 -452 1 585 21 0 0 0 chrY 96405 96426 -15806129 + AT_rich Low_complexity Low_complexity 1 21 0 1 585 26 50 0 0 chrY 96788 96828 -15805727 + AT_rich Low_complexity Low_complexity 1 40 0 1 585 23 33 0 0 chrY 97129 97159 -15805396 + AT_rich Low_complexity Low_complexity 1 30 0 1 585 460 360 7 13 chrY 97236 97388 -15805167 - RSINE1 SINE B4 0 165 15 1 585 258 260 0 0 chrY 97580 97630 -15804925 - ID SINE ID -165 59 10 1 585 908 180 0 26 chrY 97810 97964 -15804591 - B1_Mur4 SINE Alu 0 150 1 1 585 441 313 53 20 chrY 98474 98624 -15803931 + RSINE1 SINE B4 2 156 -9 1 585 278 274 56 107 chrY 98688 98884 -15803671 + B2_Mm2 SINE B2 2 187 -8 1 585 1111 76 76 5 chrY 99287 99472 -15803083 - Lx3_Mus LINE L1 0 7009 6812 1 585 4447 166 21 11 chrY 99472 100318 -15802237 + RLTR13A LTR ERVK 1 855 0 1 585 7067 96 16 18 chrY 100318 101349 -15801206 - Lx3_Mus LINE L1 -192 6817 5789 1 585 5708 47 6 1 chrY 101350 102060 -15800495 - L1Md_F2 LINE L1 -1 6581 5869 1 585 4982 31 0 0 chrY 102060 102644 -15799911 + L1Md_F2 LINE L1 5298 5881 -2 1 585 446 316 16 192 chrY 102644 102837 -15799718 + B3A SINE B2 36 194 -1 1 585 1198 241 179 14 chrY 102884 103388 -15799167 + RLTR40 LTR ERVK 184 770 -47 1 585 225 302 0 0 chrY 103560 103613 -15798942 + B3A SINE B2 4 56 -142 1 585 246 331 47 55 chrY 103901 104029 -15798526 + ID_B1 SINE B4 86 212 -12 1 585 180 0 0 0 chrY 104033 104053 -15798502 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 585 590 209 44 44 chrY 106076 106211 -15796344 - B1_Mur1 SINE Alu -5 144 10 1 585 27 0 0 0 chrY 106469 106496 -15796059 + AT_rich Low_complexity Low_complexity 1 27 0 1 585 242 276 55 44 chrY 106582 106673 -15795882 - MER34 LTR ERV1 -396 146 55 1 585 5714 213 88 24 chrY 106946 109499 -15793056 + L1_Rod LINE L1 437 3181 -2666 1 585 1235 172 0 22 chrY 109493 109724 -15792831 + Lx2B LINE L1 525 750 -6336 1 585 417 20 0 0 chrY 109764 109814 -15792741 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 585 6719 117 30 22 chrY 109814 111027 -15791528 + Lx2B LINE L1 2062 3283 -2594 1 585 1063 191 5 5 chrY 111032 111221 -15791334 + L1VL4 LINE L1 12 200 -6102 1 585 292 109 18 0 chrY 111217 111272 -15791283 + Lx LINE L1 6595 6650 -4 1 585 4983 124 65 32 chrY 111267 112174 -15790381 + Lx2B LINE L1 3274 4210 -1667 1 585 8482 26 1 0 chrY 112174 113348 -15789207 - L1Md_A LINE L1 -1 6581 5406 1 585 2809 142 27 84 chrY 113347 113743 -15788812 + Lx2B LINE L1 4200 4609 -1268 1 585 1233 81 0 0 chrY 113743 113891 -15788664 + B1_Mus1 SINE Alu 1 148 0 1 585 2809 142 27 84 chrY 113891 114087 -15788468 + Lx2B LINE L1 4610 4758 -1119 1 585 33169 81 13 1 chrY 114089 119043 -15783512 + L1Md_F2 LINE L1 570 5586 -297 1 585 8646 42 9 0 chrY 119043 120022 -15782533 + L1Md_F2 LINE L1 5587 6574 -8 1 585 23824 174 3 63 chrY 120022 120040 -15782515 + Lx2B LINE L1 5564 5564 -313 1 585 7786 144 21 8 chrY 120040 121237 -15781318 + Lx2B LINE L1 5785 6996 -4 1 585 23824 174 3 63 chrY 121237 121264 -15781291 + Lx4A LINE L1 5564 5564 -313 1 585 4307 33 8 6 chrY 121264 121754 -15780801 - L1Md_F2 LINE L1 0 6582 6092 1 585 23824 145 32 48 chrY 121754 122820 -15779735 + Lx4A LINE L1 5564 6405 -653 1 585 2410 182 28 7 chrY 122821 123246 -15779309 + Lx4A LINE L1 6621 7054 -4 1 585 237 65 0 0 chrY 123251 123282 -15779273 + (ATG)n Simple_repeat Simple_repeat 3 33 0 1 585 334 239 59 109 chrY 123294 123496 -15779059 + L1_Rod LINE L1 3172 3363 -2484 1 585 1997 182 83 40 chrY 123515 123757 -15778798 + L1_Mur1 LINE L1 674 861 -6123 1 585 2355 143 16 18 chrY 123757 124141 -15778414 + RLTR9A2 LTR ERVK 1 383 0 1 585 1997 173 12 50 chrY 124141 124389 -15778166 + L1_Mur1 LINE L1 862 1105 -5879 1 585 19812 130 32 22 chrY 124412 124765 -15777790 + L1_Mur1 LINE L1 2444 2793 -3093 1 585 215 79 26 0 chrY 124765 124803 -15777752 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 585 19812 130 32 22 chrY 124803 127858 -15774697 + L1_Mur1 LINE L1 2794 5885 -1 1 585 800 295 104 6 chrY 127870 128197 -15774358 + Lx9 LINE L1 6630 6988 -656 1 585 2348 42 3 0 chrY 128193 128477 -15774078 + L1Md_A LINE L1 6297 6581 -1 1 585 440 290 123 0 chrY 128486 128641 -15773914 + Lx9 LINE L1 6982 7155 -489 1 585 3611 147 40 67 chrY 128642 129399 -15773156 + RMER17A LTR ERVK 1 736 -15 1 585 1262 229 40 10 chrY 129436 129740 -15772815 + Lx9 LINE L1 7149 7461 -183 1 585 246 279 66 0 chrY 130225 130286 -15772269 + B1F2 SINE Alu 46 110 -39 1 73 558 277 203 21 chrY 130862 131098 -15771457 + B4 SINE B4 5 283 -9 1 586 206 228 0 34 chrY 131098 131157 -15771398 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 1 586 207 231 0 0 chrY 131976 132015 -15770540 + A-rich Low_complexity Low_complexity 1 39 0 1 586 351 65 0 0 chrY 132015 132061 -15770494 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 1 586 1222 69 0 0 chrY 133031 133175 -15769380 - B1_Mus1 SINE Alu 0 148 5 1 586 23 68 0 0 chrY 134065 134109 -15768446 + AT_rich Low_complexity Low_complexity 1 44 0 1 586 185 217 23 8 chrY 134144 134274 -15768281 + (TA)n Simple_repeat Simple_repeat 1 132 0 1 586 34 24 0 0 chrY 134289 134330 -15768225 + AT_rich Low_complexity Low_complexity 1 41 0 1 586 1752 129 112 0 chrY 134472 134759 -15767796 - L1_Mus3 LINE L1 -1 6637 6319 1 586 10808 149 81 62 chrY 134760 136948 -15765607 - L1_Mm LINE L1 -907 4976 2747 1 586 423 198 94 0 chrY 136954 137060 -15765495 - L1_Mur3 LINE L1 -479 5401 5286 1 586 692 189 0 30 chrY 137075 137249 -15765306 - RMER1B Other Other -9 1057 857 1 586 957 74 0 0 chrY 137715 137837 -15764718 - B1_Mus1 SINE Alu -25 123 2 1 586 376 324 83 0 chrY 139025 139133 -15763422 + B1_Mur2 SINE Alu 6 122 -27 1 586 1282 113 6 48 chrY 139387 139610 -15762945 + L1_Mus4 LINE L1 5842 6052 -584 1 586 897 158 32 130 chrY 140714 140961 -15761594 - L1_Mur3 LINE L1 -558 5322 5100 1 586 2617 186 35 78 chrY 141395 142072 -15760483 + Lx7 LINE L1 4770 5417 -463 1 586 642 289 128 40 chrY 142072 142400 -15760155 - RLTR9A LTR ERVK 0 368 12 1 586 2733 199 105 55 chrY 142419 143170 -15759385 + Lx7 LINE L1 5411 6201 -1495 1 586 819 46 0 0 chrY 143170 143278 -15759277 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 586 2733 230 19 95 chrY 143278 143468 -15759087 + Lx7 LINE L1 6202 6362 -1334 1 586 1477 79 11 0 chrY 143468 143657 -15758898 + B2_Mm1a SINE B2 1 191 -2 1 586 2733 230 19 95 chrY 143657 143742 -15758813 + Lx7 LINE L1 6363 6440 -1256 1 586 3288 140 58 62 chrY 143744 144376 -15758179 + RLTR26 LTR ERVK 1 630 -12 1 586 6979 62 40 19 chrY 144393 144569 -15757986 - RMER17A-int LTR ERVK -1 1727 1556 1 586 1636 42 0 21 chrY 144569 144762 -15757793 + B2_Mm1t SINE B2 1 189 -4 1 586 6979 77 78 14 chrY 144762 146215 -15756340 - RMER17A-int LTR ERVK -173 1555 1 1 586 2044 91 37 69 chrY 146215 146804 -15755751 - RMER17A LTR ERVK 0 751 1 1 586 313 253 0 65 chrY 146804 146880 -15755675 - RLTR25A LTR ERVK -588 515 446 1 586 2785 161 72 9 chrY 146818 147345 -15755210 - ORR1A1-int LTR MaLR -1403 560 1 1 586 227 77 205 0 chrY 147348 147387 -15755168 - ORR1A1 LTR MaLR -8 318 272 1 586 1127 79 36 0 chrY 147401 147541 -15755014 - B1_Mm SINE Alu -2 145 1 1 586 26 0 0 0 chrY 147550 147576 -15754979 + AT_rich Low_complexity Low_complexity 1 26 0 1 586 2685 139 66 14 chrY 147579 148002 -15754553 - Lx3C LINE L1 -7 6969 6525 1 586 1627 165 22 7 chrY 148004 148278 -15754277 - ORR1A1 LTR MaLR -66 280 3 1 586 1517 243 31 28 chrY 148291 148643 -15753912 + Lx6 LINE L1 6839 7191 -269 1 586 499 284 99 14 chrY 148641 148852 -15753703 + Lx7 LINE L1 5899 6127 -1569 1 586 266 125 0 0 chrY 148851 148891 -15753664 - Lx2 LINE L1 -1169 5828 5789 1 586 5156 143 29 9 chrY 148892 149691 -15752864 - Lx2 LINE L1 0 6997 6183 1 586 527 245 42 41 chrY 149953 150204 -15752351 + MMTV-int LTR ERVK 2877 3102 -4151 1 586 207 0 0 0 chrY 150205 150228 -15752327 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 586 1517 64 0 21 chrY 150228 150598 -15751957 - L1_Mus1 LINE L1 0 6567 6380 1 586 1029 307 56 53 chrY 150598 151223 -15751332 + MMTV-int LTR ERVK 3093 3719 -3534 1 586 3096 68 42 3 chrY 151223 151604 -15750951 - MTA_Mm LTR MaLR 0 396 1 1 586 1029 307 56 53 chrY 151604 151697 -15750858 + MMTV-int LTR ERVK 3720 3812 -3441 1 586 216 0 0 0 chrY 152262 152286 -15750269 + (T)n Simple_repeat Simple_repeat 1 24 0 1 586 312 48 0 0 chrY 153059 153101 -15749454 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 586 2364 67 58 3 chrY 153115 153428 -15749127 + L1_Mus1 LINE L1 6238 6567 0 1 586 358 259 9 53 chrY 153444 153558 -15748997 - RLTR25B LTR ERVK -479 549 441 1 586 1034 101 0 0 chrY 153458 153596 -15748959 - B1_Mus1 SINE Alu -8 140 3 1 586 183 255 39 0 chrY 153913 153964 -15748591 + L4 LINE RTE 685 737 -1292 1 586 21 36 0 0 chrY 154349 154377 -15748178 + AT_rich Low_complexity Low_complexity 1 28 0 1 586 1112 90 7 7 chrY 154701 154847 -15747708 + B1_Mus1 SINE Alu 2 147 -1 1 586 488 267 96 95 chrY 156395 156659 -15745896 - RLTR18B LTR ERVK -20 596 227 1 586 270 219 0 0 chrY 156746 156810 -15745745 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 586 853 293 13 61 chrY 156842 157155 -15745400 - RLTR18 LTR ERVK -306 310 13 1 586 213 39 0 0 chrY 159089 159115 -15743440 + (T)n Simple_repeat Simple_repeat 1 26 0 1 586 339 164 0 0 chrY 159343 159404 -15743151 + T-rich Low_complexity Low_complexity 1 61 0 1 586 258 270 62 17 chrY 159436 159538 -15743017 - B1F SINE Alu -1 116 12 1 586 246 216 176 33 chrY 159807 159898 -15742657 - B1_Mus2 SINE Alu -38 109 6 1 586 288 322 11 131 chrY 160157 160332 -15742223 + B4A SINE B4 5 158 -134 1 586 641 251 39 14 chrY 160906 161053 -15741502 + ID_B1 SINE B4 91 239 -53 1 586 250 260 40 6 chrY 161124 161200 -15741355 + B4 SINE B4 11 86 -206 1 586 320 309 0 93 chrY 161341 161448 -15741107 - B3A SINE B2 -88 110 14 1 586 233 300 0 14 chrY 161589 161660 -15740895 - PB1D10 SINE Alu -30 87 18 1 586 248 206 32 0 chrY 161688 161751 -15740804 + (TTTG)n Simple_repeat Simple_repeat 4 68 0 2 586 221 146 0 20 chrY 163424 163473 -15739082 + C-rich Low_complexity Low_complexity 3 50 0 2 586 230 344 16 16 chrY 164081 164205 -15738350 + (CATATA)n Simple_repeat Simple_repeat 4 127 0 2 586 1137 108 73 17 chrY 164779 164957 -15737598 - B2_Mm2 SINE B2 -6 189 2 2 586 512 108 0 0 chrY 165446 165520 -15737035 - B1_Mus2 SINE Alu -2 145 72 2 586 289 294 153 48 chrY 165978 166167 -15736388 + Lx7 LINE L1 7085 7293 -403 2 586 250 291 87 0 chrY 166268 166395 -15736160 + Lx7 LINE L1 7559 7696 0 2 586 259 255 17 94 chrY 166958 167075 -15735480 + MIRb SINE MIR 114 221 -47 2 586 198 0 0 0 chrY 167896 167918 -15734637 + (ATG)n Simple_repeat Simple_repeat 1 22 0 2 586 231 326 21 14 chrY 169826 169969 -15732586 - L1MB2 LINE L1 -118 6053 5910 2 586 368 20 0 20 chrY 170322 170372 -15732183 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 586 999 103 0 0 chrY 170372 170508 -15732047 - B1_Mus2 SINE Alu -10 137 2 2 586 858 196 43 21 chrY 170785 170973 -15731582 - Lx9 LINE L1 -621 7023 6832 2 586 4967 130 48 26 chrY 171203 172087 -15730468 - Lx2 LINE L1 0 6997 6095 2 586 830 100 169 0 chrY 172283 172443 -15730112 - B2_Mm1t SINE B2 0 193 7 2 586 265 281 56 0 chrY 172677 172766 -15729789 - PB1D10 SINE Alu -7 110 17 2 586 1425 135 60 35 chrY 173046 173361 -15729194 - RLTR15 LTR ERVK 0 359 37 2 586 3966 216 27 40 chrY 173363 174266 -15728289 - Lx6 LINE L1 -381 7079 6189 2 586 230 180 16 0 chrY 174311 174372 -15728183 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 586 283 259 24 0 chrY 174397 174482 -15728073 - Lx7 LINE L1 -1521 6175 6089 2 586 9147 169 105 65 chrY 174523 175045 -15727510 - L1_Mur3 LINE L1 -2102 3778 3240 2 586 212 59 0 29 chrY 175045 175080 -15727475 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 586 9147 196 111 73 chrY 175080 177916 -15724639 - L1_Mur3 LINE L1 -2641 3239 279 2 586 493 293 18 12 chrY 177965 178134 -15724421 + Lx9 LINE L1 7302 7471 -173 2 586 3923 50 81 2 chrY 180233 180730 -15721825 - L1_Mus2 LINE L1 -2 6564 6029 2 586 3088 208 57 32 chrY 181769 182560 -15719995 - Lx9 LINE L1 -6 7638 6828 2 586 1751 96 12 4 chrY 182706 182956 -15719599 + L1_Mus1 LINE L1 6316 6567 0 2 586 275 243 0 26 chrY 183167 183243 -15719312 - L1_Mus3 LINE L1 -5 6633 6560 2 586 1235 248 35 3 chrY 183249 183560 -15718995 - IAP-d-int LTR ERVK -4679 1863 1543 2 586 1649 239 6 100 chrY 183549 184041 -15718514 - IAP-d-int LTR ERVK -6075 467 22 2 586 724 289 56 45 chrY 184088 184443 -15718112 - RLTR10D LTR ERVK 0 359 1 2 586 466 269 32 0 chrY 184586 184742 -15717813 - L1_Mur3 LINE L1 -6815 897 737 2 586 513 0 0 0 chrY 186346 186403 -15716152 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 586 288 111 0 0 chrY 188011 188065 -15714490 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 2 586 1195 124 38 0 chrY 188141 188350 -15714205 - ORR1A2 LTR MaLR -4 323 107 2 586 503 31 15 0 chrY 188697 188762 -15713793 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 586 621 0 0 0 chrY 188762 188831 -15713724 + (TGAA)n Simple_repeat Simple_repeat 2 70 0 2 586 588 14 0 0 chrY 189352 189421 -15713134 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 586 549 0 0 0 chrY 189890 189951 -15712604 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 2 586 3598 182 69 81 chrY 190413 191003 -15711552 - Lx5 LINE L1 -726 6324 5729 2 586 366 23 0 0 chrY 191003 191046 -15711509 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 586 3598 164 128 58 chrY 191046 191076 -15711479 - Lx5 LINE L1 -149 5728 5727 2 586 339 25 0 0 chrY 191076 191116 -15711439 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 586 3598 164 128 58 chrY 191116 191793 -15710762 - Lx5 LINE L1 -151 5726 4952 2 586 10554 106 13 4 chrY 191792 193755 -15708800 - L1_Mus1 LINE L1 -243 6324 4347 2 586 2249 108 153 55 chrY 193755 194194 -15708361 - RLTR45 LTR ERVK 0 482 1 2 586 9762 47 5 0 chrY 194200 195340 -15707215 - RLTR45-int LTR ERVK -6 7238 6093 2 586 3773 40 7 0 chrY 195330 195777 -15706778 - RLTR45-int LTR ERVK -1731 5513 5064 2 586 9418 55 6 8 chrY 195769 196966 -15705589 - RLTR45-int LTR ERVK -3258 3986 2792 2 586 4964 58 58 9 chrY 197232 197892 -15704663 - RLTR45-int LTR ERVK -6552 692 1 2 586 2849 107 114 18 chrY 197892 198331 -15704224 - RLTR45 LTR ERVK 0 482 2 2 586 1198 75 0 65 chrY 198331 198466 -15704089 - L1_Mus1 LINE L1 -1530 4353 4224 2 586 1463 64 5 5 chrY 198466 198654 -15703901 - B2_Mm1a SINE B2 -5 188 1 2 586 1198 75 0 65 chrY 198654 198704 -15703851 - L1_Mus1 LINE L1 -1660 4223 4180 2 586 6073 105 6 1 chrY 198700 199597 -15702958 + MusHAL1 LINE L1 1284 2184 -528 2 586 1173 81 0 0 chrY 199603 199751 -15702804 - B1_Mus1 SINE Alu 0 148 1 2 586 3404 171 20 7 chrY 199835 200393 -15702162 - ETnERV2-int LTR ERVK -347 7059 6495 2 586 1274 339 39 41 chrY 200495 201454 -15701101 - RNERVK23-int LTR ERVK -463 7754 6811 2 586 384 242 36 57 chrY 201860 202000 -15700555 - RNERVK23-int LTR ERVK -1886 6331 6195 2 586 2818 323 58 49 chrY 202430 204795 -15697760 - RNERVK23-int LTR ERVK -2477 5740 3355 2 586 394 258 53 11 chrY 205178 205272 -15697283 - ETnERV2-int LTR ERVK -210 7196 7099 2 586 2263 140 17 22 chrY 205282 205691 -15696864 - BGLII_B LTR ERVK -34 407 1 2 586 567 96 0 0 chrY 205712 205795 -15696760 + (TTA)n Simple_repeat Simple_repeat 2 84 0 2 586 2845 241 39 92 chrY 205795 206731 -15695824 - Lx5 LINE L1 -13 7037 6152 2 586 525 139 0 0 chrY 206744 206852 -15695703 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 586 2360 176 64 13 chrY 206873 207493 -15695062 - Lx5 LINE L1 -938 6112 5449 2 586 290 294 77 71 chrY 207819 208002 -15694553 + RLTR23 LTR ERV1 247 430 0 2 586 1841 178 11 8 chrY 208005 208363 -15694192 - Lx5 LINE L1 -428 5449 5091 2 586 1087 259 72 60 chrY 208365 208783 -15693772 + BGLII_B LTR ERVK 1 423 -18 2 586 270 217 0 12 chrY 208980 209064 -15693491 - BGLII_B LTR ERVK -217 224 142 2 586 678 115 86 7 chrY 209581 209721 -15692834 + Lx LINE L1 6502 6652 -2 2 586 216 0 0 0 chrY 209750 209774 -15692781 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 2 586 4572 98 19 9 chrY 210933 211622 -15690933 - L1_Mus3 LINE L1 -1 6637 5942 2 586 444 37 0 0 chrY 212063 212117 -15690438 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2 586 569 291 37 65 chrY 213266 213576 -15688979 + MuRRS4-int LTR ERV1 401 779 -6822 2 586 762 240 64 26 chrY 213841 214106 -15688449 + BGLII_B LTR ERVK 93 367 -74 2 586 453 36 0 0 chrY 214122 214177 -15688378 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 586 331 317 51 57 chrY 214702 214879 -15687676 + MuRRS4-int LTR ERV1 587 762 -6794 2 586 198 0 0 0 chrY 215367 215389 -15687166 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 2 586 2341 307 83 91 chrY 215432 218236 -15684319 + MuRRS4-int LTR ERV1 1234 4014 -1049 2 586 356 69 52 0 chrY 218467 218525 -15684030 + B2_Mm2 SINE B2 121 181 -14 2 586 563 247 51 30 chrY 218541 218775 -15683780 - RLTR42-int LTR ERVK -3434 2088 1850 2 586 4347 202 70 28 chrY 218961 220306 -15682249 - Lx2B LINE L1 -1 7007 5446 2 586 603 0 0 0 chrY 220306 220373 -15682182 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 586 2249 149 3 14 chrY 220373 220449 -15682106 - Lx2B LINE L1 -432 5445 5369 2 586 10695 54 31 11 chrY 220452 221774 -15680781 + RLTR45-int LTR ERVK 61 1408 -5836 2 586 41349 56 28 14 chrY 221773 227357 -15675198 + RLTR45-int LTR ERVK 1583 7244 0 2 586 3701 55 23 2 chrY 227357 227829 -15674726 + RLTR45 LTR ERVK 1 482 0 2 586 11558 152 24 32 chrY 227831 228559 -15673996 - Lx2B LINE L1 -506 5371 4622 2 586 207 0 0 0 chrY 228559 228582 -15673973 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 586 722 204 177 63 chrY 228592 228959 -15673596 - RLTR9E LTR ERVK 0 409 1 2 586 11558 152 24 32 chrY 228959 229166 -15673389 - Lx2B LINE L1 -1260 4617 4414 2 586 1243 104 10 45 chrY 229166 229367 -15673188 - B2_Mm2 SINE B2 -1 194 1 2 586 11558 152 24 32 chrY 229367 230664 -15671891 - Lx2B LINE L1 -1464 4413 3144 2 586 1239 211 136 21 chrY 230664 230994 -15671561 + ORR1B1-int LTR MaLR 1018 1385 -124 2 586 1207 198 11 19 chrY 231016 231284 -15671271 + Lx6 LINE L1 5591 5856 -1604 2 586 1255 89 16 11 chrY 231324 231506 -15671049 + B2_Mm2 SINE B2 6 188 -7 2 586 563 231 15 7 chrY 231506 231641 -15670914 + Lx5 LINE L1 5875 6010 -1040 2 586 943 67 0 76 chrY 231768 231908 -15670647 + B1_Mm SINE Alu 6 135 -12 2 586 695 12 0 12 chrY 231908 231993 -15670562 + (GAAAA)n Simple_repeat Simple_repeat 1 84 0 2 586 392 306 0 0 chrY 232004 232102 -15670453 + Lx5 LINE L1 6180 6277 -773 2 586 539 76 102 28 chrY 232117 232225 -15670330 + RLTR31_Mm LTR ERVK 2 117 -444 2 586 1587 222 33 40 chrY 232314 232713 -15669842 - RMER10B LTR ERVL -2 396 1 2 586 1101 118 0 0 chrY 232962 233131 -15669424 + (GA)n Simple_repeat Simple_repeat 2 170 0 2 586 1006 80 65 0 chrY 233371 233509 -15669046 - B1_Mus2 SINE Alu 0 147 1 2 586 1174 33 0 13 chrY 233747 233900 -15668655 + (GAGAA)n Simple_repeat Simple_repeat 4 154 0 2 586 324 0 0 0 chrY 234575 234611 -15667944 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2 586 846 259 127 4 chrY 235488 235755 -15666800 + Lx9 LINE L1 7091 7390 -254 2 586 30 0 0 0 chrY 235772 235802 -15666753 + AT_rich Low_complexity Low_complexity 1 30 0 2 586 25 31 0 0 chrY 236495 236527 -15666028 + AT_rich Low_complexity Low_complexity 1 32 0 2 586 24 0 0 0 chrY 236884 236908 -15665647 + AT_rich Low_complexity Low_complexity 1 24 0 2 586 26 30 0 0 chrY 237326 237359 -15665196 + AT_rich Low_complexity Low_complexity 1 33 0 2 586 332 218 115 29 chrY 237456 237560 -15664995 - RLTR25B LTR ERVK -475 553 441 2 586 638 91 6 0 chrY 237478 237586 -15664969 - B1_Mus1 SINE Alu -25 124 15 2 586 303 209 112 34 chrY 237512 237601 -15664954 - B4A SINE B4 -119 173 78 2 586 21 0 0 0 chrY 237601 237622 -15664933 + AT_rich Low_complexity Low_complexity 1 21 0 2 586 481 260 0 0 chrY 237680 237806 -15664749 - Lx5 LINE L1 -726 6324 6174 2 586 588 252 8 19 chrY 237814 238023 -15664532 + Lx5 LINE L1 6487 6886 -574 2 586 9355 185 37 66 chrY 238021 238919 -15663636 - Lx5 LINE L1 -1536 6160 5288 2 586 213 39 0 0 chrY 238919 238945 -15663610 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 586 6031 32 12 0 chrY 238945 239674 -15662881 - L1Md_F3 LINE L1 -5 6579 5842 2 586 9355 181 43 50 chrY 239674 240224 -15662331 - Lx5 LINE L1 -590 5287 4755 2 586 441 0 0 0 chrY 240224 240273 -15662282 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 586 9355 181 43 50 chrY 240273 241297 -15661258 - Lx5 LINE L1 -1123 4754 3682 2 586 210 37 0 0 chrY 241382 241409 -15661146 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 586 278 292 43 38 chrY 241444 241629 -15660926 - L1M2 LINE L1 -863 5280 5095 2 586 421 153 0 65 chrY 241648 241725 -15660830 + B1_Mus1 SINE Alu 2 73 -75 3 586 429 95 0 0 chrY 241953 242016 -15660539 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 3 586 1187 41 0 7 chrY 242056 242204 -15660351 - B1_Mus2 SINE Alu 0 147 1 3 586 21 0 0 0 chrY 242254 242275 -15660280 + AT_rich Low_complexity Low_complexity 1 21 0 3 586 309 285 125 110 chrY 242607 242726 -15659829 - L1M2 LINE L1 -1674 4469 4336 2 586 1054 62 27 20 chrY 242726 242873 -15659682 + B1_Mus1 SINE Alu 1 148 0 3 586 309 285 125 110 chrY 242873 243080 -15659475 - L1M2 LINE L1 -1808 4335 4138 2 586 1865 135 27 45 chrY 243234 243284 -15659271 - ORR1A4 LTR MaLR -1 328 288 3 586 1291 82 44 0 chrY 243284 243466 -15659089 - B2_Mm1a SINE B2 -3 190 1 3 586 1865 135 27 45 chrY 243466 243749 -15658806 - ORR1A4 LTR MaLR -42 287 1 3 586 21 36 0 0 chrY 243851 243879 -15658676 + AT_rich Low_complexity Low_complexity 1 28 0 3 586 1258 84 84 0 chrY 243890 244068 -15658487 + B2_Mm2 SINE B2 1 193 -2 3 586 2167 83 126 15 chrY 244300 244642 -15657913 - L1_Mus3 LINE L1 -6 6632 6253 3 586 21 0 0 0 chrY 244740 244761 -15657794 + AT_rich Low_complexity Low_complexity 1 21 0 3 586 1139 71 39 0 chrY 245165 245320 -15657235 - B2_Mm2 SINE B2 -6 189 29 3 586 1076 82 0 0 chrY 245330 245465 -15657090 - B1_Mus2 SINE Alu -11 136 2 3 586 1440 211 46 13 chrY 245549 245851 -15656704 - Lx5 LINE L1 -4 7046 6735 3 586 21 71 0 0 chrY 246041 246083 -15656472 + AT_rich Low_complexity Low_complexity 1 42 0 3 586 483 342 35 0 chrY 246084 246283 -15656272 - B3 SINE B2 -10 206 1 3 586 26 50 0 0 chrY 247399 247439 -15655116 + AT_rich Low_complexity Low_complexity 1 40 0 3 586 276 253 218 0 chrY 247439 247526 -15655029 - ID_B1 SINE B4 -20 204 99 3 586 356 274 91 67 chrY 247660 247989 -15654566 - L1M3 LINE L1 -1483 4657 4321 3 586 238 269 114 45 chrY 248071 248273 -15654282 - L1M3 LINE L1 -2375 3768 3553 3 586 278 0 0 51 chrY 248284 248323 -15654232 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 586 1165 49 0 14 chrY 248323 248460 -15654095 - B1_Mus1 SINE Alu -11 137 1 3 586 234 69 0 0 chrY 248460 248489 -15654066 - U6 snRNA snRNA -78 29 1 3 586 532 241 6 82 chrY 248646 248804 -15653751 - B3 SINE B2 -5 211 66 3 586 246 148 0 0 chrY 248820 248874 -15653681 + (T)n Simple_repeat Simple_repeat 1 54 0 3 586 290 311 78 12 chrY 248961 249127 -15653428 - L1_Mur3 LINE L1 -3403 2477 2301 3 586 186 43 0 0 chrY 249757 249780 -15652775 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 3 586 741 335 42 5 chrY 250016 250232 -15652323 - ID_B1 SINE B4 0 224 1 3 586 7274 170 43 40 chrY 250949 252979 -15649576 - Lx5 LINE L1 -3 7047 4981 3 586 200 211 0 50 chrY 252992 253052 -15649503 + T-rich Low_complexity Low_complexity 3 59 0 3 586 2278 227 54 72 chrY 253745 254358 -15648197 - Lx6 LINE L1 -9 7451 6850 3 586 246 207 0 0 chrY 254362 254420 -15648135 + C-rich Low_complexity Low_complexity 5 62 0 3 586 669 175 0 34 chrY 254468 254586 -15647969 - Lx7 LINE L1 -760 6936 6823 3 586 2810 245 23 52 chrY 254589 255339 -15647216 - Lx6 LINE L1 -757 6703 5976 3 586 692 86 86 0 chrY 255377 255494 -15647061 + B1_Mus1 SINE Alu 22 148 0 3 586 234 236 0 0 chrY 255569 255624 -15646931 - Lx6 LINE L1 -1513 5947 5893 3 586 186 103 0 0 chrY 255661 255690 -15646865 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 3 586 1425 260 139 69 chrY 255749 256303 -15646252 - Lx6 LINE L1 -56 7404 6812 3 586 1452 270 6 3 chrY 256303 256649 -15645906 - RodERV21-int LTR ERV1 -2624 2367 2021 3 586 1066 286 60 42 chrY 256724 257126 -15645429 + RLTR16 LTR ERVK 85 493 -12 3 586 994 228 10 14 chrY 257216 257425 -15645130 - Lx5 LINE L1 -514 6536 6329 3 586 22 0 0 0 chrY 257429 257451 -15645104 + AT_rich Low_complexity Low_complexity 1 22 0 3 586 23 54 0 0 chrY 257476 257513 -15645042 + AT_rich Low_complexity Low_complexity 1 37 0 3 586 25 0 0 0 chrY 258568 258593 -15643962 + AT_rich Low_complexity Low_complexity 1 25 0 3 586 30 0 0 0 chrY 259481 259511 -15643044 + AT_rich Low_complexity Low_complexity 1 30 0 3 586 443 280 106 33 chrY 259847 260150 -15642405 - L1M3 LINE L1 -388 5795 5471 3 586 193 0 94 0 chrY 260491 260523 -15642032 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 586 2224 168 39 15 chrY 260671 261153 -15641402 + RLTR31A_Mm LTR ERVK 1 512 -49 3 586 198 0 0 0 chrY 261158 261180 -15641375 + (T)n Simple_repeat Simple_repeat 1 22 0 3 586 1169 105 61 0 chrY 261283 261464 -15641091 + B2_Mm2 SINE B2 2 193 -2 3 73 8794 22 1 0 chrY 261606 263304 -15639251 - L1Md_T LINE L1 0 6582 4883 3 587 21 0 0 0 chrY 264657 264678 -15637877 + AT_rich Low_complexity Low_complexity 1 21 0 3 587 409 238 53 53 chrY 264852 264985 -15637570 + BC1_Mm scRNA scRNA 3 135 -17 3 587 389 297 122 7 chrY 265106 265245 -15637310 + B3A SINE B2 2 156 -42 3 587 1234 313 76 31 chrY 265646 266252 -15636303 - Lx9 LINE L1 -63 7581 6949 3 587 15949 84 20 23 chrY 266263 268815 -15633740 - ETnERV-int LTR ERVK -48 4796 799 3 587 1779 118 28 28 chrY 268819 269141 -15633414 - RLTRETN_Mm LTR ERVK 0 322 1 3 587 2052 202 64 43 chrY 269265 269778 -15632777 - Lx4B LINE L1 -19 7039 6516 3 587 1448 157 12 8 chrY 269756 270012 -15632543 + L1_Mur2 LINE L1 4997 5253 -624 3 587 246 226 57 0 chrY 270070 270123 -15632432 - B4 SINE B4 -203 89 34 3 587 578 252 20 7 chrY 270129 270277 -15632278 - MTC LTR MaLR -267 154 5 3 587 261 0 0 0 chrY 270288 270317 -15632238 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 587 1153 215 18 32 chrY 270709 270988 -15631567 + RLTR11A LTR ERVK 254 528 0 3 587 424 302 97 27 chrY 270991 271368 -15631187 - L1M2 LINE L1 -1184 4959 4529 3 587 515 29 14 0 chrY 271392 271461 -15631094 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 587 2951 198 121 19 chrY 271463 272159 -15630396 - L1_Rod LINE L1 -6405 767 1 3 587 507 290 16 64 chrY 272219 272407 -15630148 - L1_Rod LINE L1 -6944 228 50 3 587 307 296 57 28 chrY 272464 272676 -15629879 - L1M2 LINE L1 -4136 1744 1527 3 587 645 128 0 0 chrY 272710 272812 -15629743 + (CATA)n Simple_repeat Simple_repeat 3 104 0 3 587 1188 48 7 0 chrY 272899 273046 -15629509 - B1_Mus1 SINE Alu 0 148 1 3 587 405 0 0 0 chrY 273543 273588 -15628967 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 3 587 305 252 234 8 chrY 273672 273800 -15628755 - MT2A LTR ERVL -1 532 376 3 587 21 0 0 0 chrY 274764 274785 -15627770 + AT_rich Low_complexity Low_complexity 1 21 0 3 587 1262 296 67 91 chrY 274958 275555 -15627000 - Lx7 LINE L1 -375 7321 6739 3 587 1202 277 137 28 chrY 275566 276056 -15626499 + Lx7 LINE L1 6226 6782 -691 3 587 887 158 42 32 chrY 276454 276643 -15625912 - B2_Mm2 SINE B2 -4 191 1 3 587 513 134 378 0 chrY 278436 278563 -15623992 + URR1A DNA MER1_type 52 226 0 3 587 789 90 0 0 chrY 279139 279250 -15623305 + (CTTA)n Simple_repeat Simple_repeat 2 112 0 3 587 260 260 0 59 chrY 279643 279745 -15622810 + CT-rich Low_complexity Low_complexity 4 99 0 3 587 1146 95 0 0 chrY 280397 280545 -15622010 - B1_Mus1 SINE Alu 0 148 1 3 587 8272 41 5 9 chrY 280678 280916 -15621639 - L1Md_F3 LINE L1 0 6584 6348 3 587 3437 45 0 0 chrY 280916 281312 -15621243 + MTA_Mm LTR MaLR 1 396 0 3 587 9239 39 3 1 chrY 281312 282408 -15620147 + MTA_Mm-int LTR MaLR 1 1098 0 3 587 3247 46 2 17 chrY 282408 282810 -15619745 + MTA_Mm LTR MaLR 1 396 0 3 587 15097 45 8 11 chrY 282810 285159 -15617396 - L1Md_F3 LINE L1 -237 6347 4004 3 587 523 288 34 21 chrY 285158 285392 -15617163 - Lx7 LINE L1 -1827 5869 5633 3 587 247 161 34 51 chrY 285460 285519 -15617036 + L1_Mur3 LINE L1 4820 4877 -1003 3 587 440 152 0 10 chrY 285767 285867 -15616688 + (TG)n Simple_repeat Simple_repeat 1 99 0 3 587 2704 244 72 69 chrY 285913 286419 -15616136 + Lx5 LINE L1 6184 6700 -350 3 587 185 0 40 0 chrY 286419 286444 -15616111 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 587 2704 244 72 69 chrY 286444 286796 -15615759 + Lx5 LINE L1 6701 7044 -6 3 587 2583 134 22 29 chrY 286832 287276 -15615279 + BGLII_B LTR ERVK 1 441 0 3 587 1013 104 28 0 chrY 287313 287457 -15615098 + B1_Mus1 SINE Alu 1 148 0 3 587 5245 102 111 0 chrY 287463 288274 -15614281 - MusHAL1 LINE L1 -528 2184 1284 3 587 7598 99 10 24 chrY 288270 289405 -15613150 + L1_Mus1 LINE L1 4180 5298 -585 3 587 2726 67 3 0 chrY 289408 289739 -15612816 + IAPEY2_LTR LTR ERVK 1 332 0 3 587 13206 107 27 24 chrY 289739 291716 -15610839 + IAPEY3-int LTR ERVK 1 1982 -5698 3 587 3489 87 25 0 chrY 291693 292167 -15610388 + IAPEY3-int LTR ERVK 2238 2723 -4957 3 587 502 34 0 0 chrY 292134 292193 -15610362 + IAPEY3-int LTR ERVK 4852 4910 -2770 3 587 3443 117 13 28 chrY 292193 292926 -15609629 + IAPEY3-int LTR ERVK 6907 7581 0 3 587 2925 60 11 0 chrY 292926 293279 -15609276 + IAPEY2_LTR LTR ERVK 1 357 0 3 587 46210 55 10 1 chrY 293279 297796 -15604759 + IAPEY3-int LTR ERVK 1753 6314 -1366 3 587 7499 11 2 5 chrY 297796 298620 -15603935 - RLTR13B2 LTR ERVK 0 822 1 3 587 46210 52 36 1 chrY 298620 299942 -15602613 + IAPEY3-int LTR ERVK 6315 7680 0 3 587 2869 48 0 0 chrY 299942 300274 -15602281 + IAPEY3_LTR LTR ERVK 1 332 0 3 587 7079 89 16 9 chrY 300299 301548 -15601007 + L1_Mus1 LINE L1 5304 6567 0 3 587 2801 199 54 89 chrY 301583 301735 -15600820 + Lx5 LINE L1 5441 5614 -1436 3 587 243 0 0 0 chrY 301735 301762 -15600793 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 587 2801 199 50 83 chrY 301762 301878 -15600677 + Lx5 LINE L1 5615 5732 -1318 3 587 276 77 0 0 chrY 301878 301917 -15600638 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 587 2801 199 50 83 chrY 301917 301945 -15600610 + Lx5 LINE L1 5733 5734 -1316 3 587 459 0 0 0 chrY 301945 301996 -15600559 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 587 2801 199 50 83 chrY 301996 302584 -15599971 + Lx5 LINE L1 5735 6323 -727 3 587 464 0 0 18 chrY 303024 303081 -15599474 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 3 587 261 98 0 0 chrY 303563 303604 -15598951 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 587 963 120 25 0 chrY 305716 305874 -15596681 + B2_Mm1a SINE B2 4 165 -28 3 587 1396 19 5 9 chrY 305874 306092 -15596463 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 3 587 494 378 26 11 chrY 306627 306892 -15595663 + B4A SINE B4 1 269 -23 3 587 1591 276 55 50 chrY 306919 308150 -15594405 - RMER1A Other Other -532 534 2 3 587 1845 179 46 129 chrY 308212 308655 -15593900 - L1_Mur2 LINE L1 -1719 4158 3749 3 587 1271 118 16 0 chrY 308655 308841 -15593714 - B2_Mm2 SINE B2 -3 192 4 4 587 1845 179 46 129 chrY 308841 308923 -15593632 - L1_Mur2 LINE L1 -2129 3748 3677 3 587 2358 167 77 4 chrY 308925 309394 -15593161 + L1_Mur2 LINE L1 4909 5411 -466 4 587 473 279 271 19 chrY 309406 309767 -15592788 + RLTR16 LTR ERVK 31 483 -22 4 587 1743 206 30 14 chrY 309975 310344 -15592211 + L1_Mur2 LINE L1 5396 5770 -107 4 587 1931 110 50 91 chrY 310345 310561 -15591994 - ORR1A3 LTR MaLR 0 326 101 4 587 1306 118 38 0 chrY 310561 310747 -15591808 - B2_Mm2 SINE B2 -1 194 2 4 587 1931 110 50 91 chrY 310747 310870 -15591685 - ORR1A3 LTR MaLR -226 100 1 4 587 1430 114 42 0 chrY 310870 311107 -15591448 - ORR1A3-int LTR MaLR 0 1963 1717 4 587 535 285 99 46 chrY 311376 311730 -15590825 - RLTR26 LTR ERVK -226 416 5 4 587 7207 176 71 31 chrY 311741 312963 -15589592 - ORR1A3-int LTR MaLR -241 1722 389 4 587 6351 33 1 9 chrY 312963 313727 -15588828 + L1Md_F3 LINE L1 5826 6583 -1 4 587 7207 176 71 31 chrY 313727 313738 -15588817 - ORR1A3-int LTR MaLR -1575 388 385 4 587 772 43 256 0 chrY 313738 313855 -15588700 + B1_Mm SINE Alu 1 147 0 4 587 7207 176 71 31 chrY 313855 314070 -15588485 - ORR1A3-int LTR MaLR -1579 384 197 4 587 1078 111 0 0 chrY 314070 314214 -15588341 + B1_Mus1 SINE Alu 3 146 -2 4 587 1030 87 18 12 chrY 314217 314380 -15588175 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 4 587 7207 176 71 31 chrY 314380 314581 -15587974 - ORR1A3-int LTR MaLR -1767 196 1 4 587 2235 302 131 40 chrY 314591 315679 -15586876 + Lx5 LINE L1 5773 6959 -91 4 587 275 281 129 52 chrY 315709 316002 -15586553 - RMER12 LTR ERVK -111 1211 1006 4 587 1037 106 8 0 chrY 316024 316261 -15586294 + (TTTC)n Simple_repeat Simple_repeat 1 239 0 4 587 998 96 0 22 chrY 316263 316402 -15586153 - B1_Mus2 SINE Alu -8 139 4 4 587 582 237 17 100 chrY 316437 316676 -15585879 - RLTR22_Mus LTR ERVK -996 812 594 4 587 1113 133 12 1 chrY 316688 316880 -15585675 - B2_Mm2 SINE B2 -3 213 4 4 587 1058 251 148 44 chrY 316952 317480 -15585075 - RLTR22_Mur LTR ERVK -1264 584 2 4 587 318 230 23 0 chrY 317486 317573 -15584982 + Lx6 LINE L1 7346 7434 -26 4 587 311 0 26 0 chrY 317580 317619 -15584936 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 587 1230 111 21 16 chrY 317632 317824 -15584731 + B2_Mm1a SINE B2 1 193 0 4 587 1739 16 0 0 chrY 317846 318038 -15584517 + B2_Mm1a SINE B2 1 192 -1 4 587 1089 84 7 0 chrY 318051 318194 -15584361 + B1_Mus1 SINE Alu 5 148 0 4 587 298 197 0 29 chrY 318194 318262 -15584293 - RLTR42-int LTR ERVK -3927 1595 1530 4 587 596 337 0 6 chrY 318519 318686 -15583869 + RLTR21 LTR ERVK 1 166 -1406 4 587 399 127 0 0 chrY 318700 318763 -15583792 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 4 587 1218 48 0 0 chrY 318763 318910 -15583645 - B1_Mm SINE Alu 0 147 1 4 587 2078 156 46 46 chrY 318912 319369 -15583186 + RLTR21 LTR ERVK 167 623 -949 4 587 4506 153 48 8 chrY 319371 319718 -15582837 + Lx3C LINE L1 5116 5443 -443 4 587 282 56 0 0 chrY 319718 319754 -15582801 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 587 5176 130 59 8 chrY 319754 320751 -15581804 + Lx3C LINE L1 5444 6502 -474 4 587 1988 84 226 25 chrY 320764 321202 -15581353 - RLTR47_MM LTR ERV1 -6 526 1 4 587 348 117 83 0 chrY 321202 321262 -15581293 + Lx3C LINE L1 6499 6563 -413 4 587 942 97 0 0 chrY 321287 321421 -15581134 + B1_Mus2 SINE Alu 14 147 0 4 587 858 118 0 62 chrY 321770 321932 -15580623 - RLTR11B LTR ERVK -301 152 1 4 587 629 216 77 6 chrY 321936 322104 -15580451 - Lx7 LINE L1 -1899 5797 5618 4 587 2275 85 3 9 chrY 322111 322445 -15580110 - IAPLTR1a_Mm LTR ERVK -5 332 1 4 587 19301 29 8 13 chrY 322447 324413 -15578142 - IAPEz-int LTR ERVK -2 6479 4524 4 587 1151 7 0 0 chrY 324413 324550 -15578005 - L1Md_A LINE L1 0 6582 6446 4 587 19301 29 8 13 chrY 324550 324835 -15577720 - IAPEz-int LTR ERVK -1958 4523 4239 4 587 10286 59 68 90 chrY 324834 326530 -15576025 - IAPEz-int LTR ERVK -4901 1580 6 4 587 2262 85 3 18 chrY 326530 326867 -15575688 - IAPLTR1a_Mm LTR ERVK -5 332 1 4 587 231 204 0 20 chrY 326878 326928 -15575627 - Lx7 LINE L1 -342 5538 5490 4 587 2523 51 12 3 chrY 326928 327260 -15575295 + IAPEY_LTR LTR ERVK 51 385 0 4 587 577 197 57 0 chrY 327260 327382 -15575173 - Lx7 LINE L1 -389 5491 5363 4 587 305 112 368 0 chrY 327670 327776 -15574779 - B2_Mm2 SINE B2 -4 191 47 4 587 872 129 155 0 chrY 327808 327963 -15574592 - B2_Mm1t SINE B2 -14 179 1 4 587 839 10 0 10 chrY 327963 328064 -15574491 + (TTC)n Simple_repeat Simple_repeat 2 101 0 4 587 985 58 0 0 chrY 328070 328191 -15574364 - 5S rRNA rRNA 0 121 1 4 587 855 134 56 45 chrY 330667 330695 -15571860 - B2_Mm1t SINE B2 -11 182 161 4 587 180 0 0 0 chrY 330695 330715 -15571840 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 587 922 108 54 1 chrY 330715 330865 -15571690 - B2_Mm2 SINE B2 -33 160 2 4 587 823 215 56 59 chrY 331606 331827 -15570728 - RLTR14-int LTR ERV1 -3631 1686 1492 4 587 3583 172 58 42 chrY 331867 332708 -15569847 + RLTR13A LTR ERVK 1 855 0 4 587 272 349 46 29 chrY 332863 333037 -15569518 - RLTR14-int LTR ERV1 -2670 2647 2471 4 587 2157 112 18 21 chrY 333037 333365 -15569190 - ORR1A2 LTR MaLR 0 327 1 4 587 273 172 0 33 chrY 334707 334767 -15567788 + B1_Mm SINE Alu 88 145 -2 4 587 977 156 0 11 chrY 334783 334965 -15567590 + GA-rich Low_complexity Low_complexity 1 180 0 4 587 34328 48 0 3 chrY 334969 340781 -15561774 + L1Md_T LINE L1 1 5589 -297 4 587 8417 35 0 0 chrY 340781 341854 -15560701 + L1Md_T LINE L1 5590 6585 0 4 587 252 370 44 15 chrY 342955 343092 -15559463 + B1F1 SINE Alu 9 149 0 4 587 21 57 0 0 chrY 343409 343444 -15559111 + AT_rich Low_complexity Low_complexity 1 35 0 4 587 286 327 42 58 chrY 343499 343619 -15558936 - PB1D9 SINE Alu 0 120 3 4 587 728 205 160 14 chrY 344273 344486 -15558069 - Lx9 LINE L1 -237 7407 7164 4 587 276 247 154 22 chrY 344840 344931 -15557624 - ID_B1 SINE B4 -1 223 121 4 587 1246 103 16 0 chrY 345014 345199 -15557356 - B2_Mm1t SINE B2 -3 190 3 4 587 1181 114 17 0 chrY 345396 345571 -15556984 - B2_Mm1t SINE B2 -14 179 2 4 587 202 78 0 89 chrY 345684 345717 -15556838 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 587 656 54 324 0 chrY 345717 345828 -15556727 - B1_Mus2 SINE Alu 0 147 1 4 587 202 78 0 89 chrY 345828 345850 -15556705 + (TTTG)n Simple_repeat Simple_repeat 2 20 0 4 587 1102 106 0 10 chrY 345937 346349 -15556206 + (TC)n Simple_repeat Simple_repeat 1 407 0 4 587 182 174 22 0 chrY 346723 346769 -15555786 + G-rich Low_complexity Low_complexity 1 47 0 4 587 391 233 160 28 chrY 348003 348109 -15554446 - B1_Mur2 SINE Alu -13 136 17 4 587 540 254 9 0 chrY 349045 349155 -15553400 + PB1D9 SINE Alu 10 120 0 4 587 455 311 122 16 chrY 349509 349754 -15552801 - B4A SINE B4 -18 274 4 4 587 326 140 155 64 chrY 350226 350339 -15552216 - B2_Mm2 SINE B2 -8 187 48 4 587 1170 131 11 0 chrY 350390 350566 -15551989 - B2_Mm1t SINE B2 -14 179 2 4 587 305 191 143 0 chrY 351537 351600 -15550955 - RSINE1 SINE B4 -77 88 17 4 587 565 234 51 23 chrY 352249 352424 -15550131 - B2_Mm2 SINE B2 -7 188 9 4 587 257 221 15 0 chrY 352686 352754 -15549801 + CT-rich Low_complexity Low_complexity 2 70 0 4 587 926 144 0 7 chrY 352759 352906 -15549649 - B1_Mus2 SINE Alu 0 147 2 4 587 205 191 0 0 chrY 352921 352963 -15549592 + T-rich Low_complexity Low_complexity 1 42 0 4 587 426 270 92 33 chrY 353258 353411 -15549144 - B3A SINE B2 -2 196 35 4 587 506 120 71 47 chrY 353420 353540 -15549015 - PB1D9 SINE Alu -6 144 2 4 587 286 357 120 30 chrY 354247 354380 -15548175 - B4 SINE B4 -6 286 142 4 587 24 53 0 0 chrY 354534 354572 -15547983 + AT_rich Low_complexity Low_complexity 1 38 0 4 587 333 262 25 12 chrY 354625 354706 -15547849 - B3 SINE B2 -18 198 117 4 587 1352 239 142 40 chrY 354711 354948 -15547607 - L1_Rod LINE L1 -3571 2276 2005 4 587 324 0 0 0 chrY 354948 354984 -15547571 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 4 587 1071 94 0 0 chrY 354984 355122 -15547433 - B1_Mus1 SINE Alu -8 140 3 4 587 1352 239 142 40 chrY 355122 355698 -15546857 - L1_Rod LINE L1 -3843 2004 1380 4 587 519 110 0 0 chrY 356720 356793 -15545762 - B2_Mm2 SINE B2 -122 73 1 4 587 1040 98 99 39 chrY 356813 356994 -15545561 - B2_Mm1t SINE B2 -1 192 1 4 587 377 324 80 14 chrY 357124 357263 -15545292 + B3A SINE B2 58 205 -11 4 587 234 286 11 32 chrY 357297 357391 -15545164 + Lx8 LINE L1 6849 6940 -533 4 587 258 331 122 0 chrY 357487 357635 -15544920 + Lx8 LINE L1 7071 7236 -237 4 587 297 247 48 36 chrY 358127 358211 -15544344 + B4A SINE B4 1 85 -207 4 587 211 268 0 0 chrY 358285 358326 -15544229 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 4 587 598 310 205 27 chrY 358341 358668 -15543887 + ORR1D2 LTR MaLR 7 384 0 4 587 3292 148 86 48 chrY 358700 359677 -15542878 - RLTR13D1 LTR ERVK 0 1023 1 4 587 25 0 0 0 chrY 359714 359739 -15542816 + AT_rich Low_complexity Low_complexity 1 25 0 4 587 25 51 0 0 chrY 360404 360443 -15542112 + AT_rich Low_complexity Low_complexity 1 39 0 4 587 218 224 101 29 chrY 360894 360963 -15541592 - RSINE1 SINE B4 -75 90 17 4 587 604 282 0 24 chrY 361052 361219 -15541336 + Lx8 LINE L1 7174 7336 -137 4 587 478 266 139 15 chrY 362211 362382 -15540173 - B3 SINE B2 -1 215 1 4 587 542 255 143 5 chrY 362488 362677 -15539878 - B3 SINE B2 0 216 2 4 587 240 275 9 81 chrY 362683 362794 -15539761 - L1MCa LINE L1 -4868 1640 1538 4 587 29 28 0 0 chrY 363174 363210 -15539345 + AT_rich Low_complexity Low_complexity 1 36 0 4 587 1168 55 0 7 chrY 363515 363663 -15538892 + B1_Mus2 SINE Alu 1 147 0 4 587 513 32 0 0 chrY 363730 363793 -15538762 + (TGG)n Simple_repeat Simple_repeat 3 65 0 4 587 552 186 0 19 chrY 363930 364034 -15538521 + PB1D9 SINE Alu 19 120 0 4 587 293 0 27 0 chrY 364156 364193 -15538362 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 587 461 280 145 22 chrY 364274 364453 -15538102 + B3 SINE B2 5 205 -11 4 587 262 325 58 93 chrY 365918 366057 -15536498 + B2_Mm2 SINE B2 27 160 -35 5 587 376 276 102 8 chrY 366092 366220 -15536335 + B1F2 SINE Alu 2 141 -8 5 587 1120 175 135 10 chrY 366533 366821 -15535734 - Lx5 LINE L1 0 7050 6727 5 587 417 184 0 216 chrY 366822 366888 -15535667 + RLTR13D3 LTR ERVK 1 49 -1065 5 587 918 41 176 7 chrY 366888 367036 -15535519 - L1_Mus2 LINE L1 0 6566 6394 5 587 417 184 0 216 chrY 367036 367080 -15535475 + RLTR13D3 LTR ERVK 50 87 -1027 5 587 5760 153 36 42 chrY 367081 368333 -15534222 - L1_Mur2 LINE L1 -1157 4720 3476 5 587 239 255 61 41 chrY 368419 368517 -15534038 + MER5A1 DNA MER1_type 61 160 -6 5 587 330 284 0 13 chrY 368720 368795 -15533760 - MIR SINE MIR -79 129 56 5 587 548 231 29 110 chrY 369350 369559 -15532996 + B3A SINE B2 7 198 0 5 587 2554 33 33 0 chrY 369643 369976 -15532579 + L1Md_F2 LINE L1 5243 5586 -297 5 587 7749 49 18 4 chrY 369976 370947 -15531608 + L1Md_F2 LINE L1 5587 6570 -12 5 587 244 323 50 0 chrY 371053 371152 -15531403 - MamRep137 DNA TcMar? -155 289 186 5 587 819 221 23 0 chrY 371381 371553 -15531002 + MTE2a LTR MaLR 204 379 0 5 587 186 341 74 68 chrY 371919 372095 -15530460 - MIR3 SINE MIR -18 190 14 5 587 464 0 0 0 chrY 372148 372201 -15530354 - ORR1A1 LTR MaLR -8 338 286 5 587 10625 86 33 2 chrY 372199 373755 -15528800 - ORR1A1-int LTR MaLR -187 1605 2 5 587 2976 50 138 30 chrY 373756 374185 -15528370 - MT2C_Mm LTR ERVL 0 475 1 5 587 2620 128 105 34 chrY 375584 376117 -15526438 - Lx LINE L1 -10 6644 6074 5 587 504 288 8 15 chrY 376191 376325 -15526230 - B4A SINE B4 -46 246 114 5 587 311 212 205 6 chrY 376389 376508 -15526047 - PB1D10 SINE Alu -4 145 1 5 587 4318 67 39 12 chrY 376553 377125 -15525430 - LTRIS_Mus LTR ERV1 0 587 1 5 587 1329 76 16 42 chrY 377269 377462 -15525093 + B2_Mm2 SINE B2 2 189 -6 5 587 22 0 0 0 chrY 378031 378053 -15524502 + AT_rich Low_complexity Low_complexity 1 22 0 5 587 914 94 53 37 chrY 378663 378850 -15523705 - L1_Mur2 LINE L1 -2455 3422 3233 5 587 881 136 0 58 chrY 379282 379438 -15523117 - B1_Mus1 SINE Alu 0 148 2 5 587 505 243 6 95 chrY 379292 379460 -15523095 - MT2B LTR ERVL -304 297 145 5 587 1153 85 154 0 chrY 379460 379661 -15522894 - L1_Mur2 LINE L1 -2897 2980 2749 5 587 801 167 6 51 chrY 379668 379826 -15522729 - Lx4A LINE L1 -256 6802 6652 5 587 275 102 0 33 chrY 379839 379900 -15522655 + Lx4B LINE L1 6036 6094 -964 5 587 7757 133 63 11 chrY 379897 381012 -15521543 - Lx4A LINE L1 -1043 6015 4804 5 587 1758 175 6 18 chrY 381012 381338 -15521217 - ORR1A3 LTR MaLR -4 322 1 5 587 7757 141 65 14 chrY 381338 381837 -15520718 - Lx4A LINE L1 -1074 4803 4313 5 587 1331 71 38 6 chrY 382083 382266 -15520289 + B2_Mm2 SINE B2 1 189 -6 5 587 211 276 51 17 chrY 382768 382827 -15519728 - B2_Mm2 SINE B2 -112 83 23 5 587 3515 136 249 49 chrY 382827 382992 -15519563 + Lx4B LINE L1 4698 4844 -1033 5 587 2854 91 5 10 chrY 382992 383394 -15519161 - MTB LTR MaLR 0 400 1 5 587 4569 182 155 29 chrY 383394 385210 -15517345 + Lx4B LINE L1 4845 6951 -25 5 587 670 183 71 16 chrY 385242 385503 -15517052 - Lx4B LINE L1 -5 7053 6688 5 587 1162 55 0 14 chrY 385615 385763 -15516792 - B1_Mus2 SINE Alu 0 147 2 5 587 1020 268 57 70 chrY 385796 386204 -15516351 - MT2B2 LTR ERVL -5 579 70 5 587 261 0 0 0 chrY 386244 386273 -15516282 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 587 447 19 0 0 chrY 386273 386324 -15516231 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 587 3103 26 79 0 chrY 386324 386704 -15515851 + IAPLTR2a LTR ERVK 1 410 -1 5 587 297 0 0 0 chrY 386704 386737 -15515818 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 587 732 248 0 0 chrY 386751 386904 -15515651 + RMER15 LTR ERVL 423 575 0 5 587 991 275 38 8 chrY 386905 387169 -15515386 + RMER15-int LTR ERVL 2 273 -4726 5 587 412 196 18 73 chrY 387212 387241 -15515314 + RMER15-int LTR ERVL 514 542 -4457 5 587 1293 108 38 0 chrY 387241 387427 -15515128 + B2_Mm2 SINE B2 3 195 0 5 587 412 196 18 73 chrY 387427 387507 -15515048 + RMER15-int LTR ERVL 543 617 -4382 5 587 2055 248 51 10 chrY 387488 387998 -15514557 + RMER15-int LTR ERVL 749 1279 -3720 5 587 4478 189 51 26 chrY 388232 389148 -15513407 + RMER15-int LTR ERVL 3037 3982 -1017 5 587 620 48 0 0 chrY 389148 389232 -15513323 + L1Md_A LINE L1 6499 6582 0 5 587 4478 189 51 26 chrY 389232 389292 -15513263 + RMER15-int LTR ERVL 3983 4038 -961 5 587 604 277 157 36 chrY 389297 389578 -15512977 + RMER15-int LTR ERVL 4446 4760 -239 5 587 613 221 13 26 chrY 389592 389745 -15512810 + RMER15-int LTR ERVL 4815 4965 -34 5 587 1681 252 50 73 chrY 389753 389980 -15512575 + RMER15 LTR ERVL 1 211 -364 5 587 309 26 0 0 chrY 389980 390018 -15512537 + (TCTCTG)n Simple_repeat Simple_repeat 2 39 0 5 587 1681 252 50 73 chrY 390018 390350 -15512205 + RMER15 LTR ERVL 212 546 -29 5 587 334 305 83 22 chrY 390536 390717 -15511838 + Lx7 LINE L1 7127 7318 -378 5 587 1639 42 0 0 chrY 390742 390934 -15511621 - B2_Mm1a SINE B2 -1 192 1 5 588 846 116 0 0 chrY 395773 395902 -15506653 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 5 588 1004 82 74 0 chrY 395902 396037 -15506518 - B1_Mus1 SINE Alu -2 146 2 5 588 432 296 83 0 chrY 397225 397333 -15505222 + B1_Mur2 SINE Alu 6 122 -27 5 588 1209 113 6 48 chrY 397588 397811 -15504744 + L1_Mus4 LINE L1 5842 6052 -584 5 588 1802 190 47 101 chrY 398907 399480 -15503075 - L1_Mur3 LINE L1 -569 5311 4770 5 588 1379 148 24 95 chrY 399918 400254 -15502301 + Lx7 LINE L1 5106 5417 -463 5 588 669 267 128 40 chrY 400254 400582 -15501973 - RLTR9A LTR ERVK 0 368 12 5 588 2446 200 105 55 chrY 400601 401352 -15501203 + Lx7 LINE L1 5411 6201 -1495 5 588 669 36 0 0 chrY 401352 401436 -15501119 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 588 2446 227 19 96 chrY 401436 401627 -15500928 + Lx7 LINE L1 6202 6362 -1334 5 588 1307 81 11 16 chrY 401627 401815 -15500740 + B2_Mm1a SINE B2 1 187 -6 5 588 2446 227 19 96 chrY 401815 401900 -15500655 + Lx7 LINE L1 6363 6440 -1256 5 588 3310 149 74 23 chrY 401902 402050 -15500505 + RLTR26 LTR ERVK 1 167 -475 5 588 253 0 54 0 chrY 402050 402087 -15500468 + (CCCCCA)n Simple_repeat Simple_repeat 2 40 0 5 588 3310 149 74 23 chrY 402087 402549 -15500006 + RLTR26 LTR ERVK 168 641 -1 5 588 244 232 57 57 chrY 402620 402725 -15499830 - RLTR11A LTR ERVK -3 525 421 5 588 24 0 0 0 chrY 402725 402749 -15499806 + AT_rich Low_complexity Low_complexity 1 24 0 5 588 738 120 88 6 chrY 402763 402922 -15499633 + MYSERV16_I-int LTR ERVK 2146 2317 -9 5 588 240 208 0 86 chrY 402922 402980 -15499575 - ORR1A3 LTR MaLR -153 173 121 5 588 21 0 0 0 chrY 402980 403001 -15499554 + AT_rich Low_complexity Low_complexity 1 21 0 5 588 1290 206 58 7 chrY 403004 403312 -15499243 + Lx6 LINE L1 6480 6803 -657 5 588 1774 161 6 73 chrY 403316 403419 -15499136 - ORR1A3 LTR MaLR -8 318 220 5 588 3013 116 108 17 chrY 403419 403936 -15498619 + LTRIS2 LTR ERV1 1 564 0 5 588 1774 161 6 73 chrY 403936 404173 -15498382 - ORR1A3 LTR MaLR -107 219 1 5 588 9615 150 63 35 chrY 404174 404329 -15498226 - ORR1A3-int LTR MaLR -1 1962 1822 5 588 1144 89 0 0 chrY 404329 404475 -15498080 + B1_Mus2 SINE Alu 2 147 0 5 588 9615 150 63 35 chrY 404475 406221 -15496334 - ORR1A3-int LTR MaLR -142 1821 8 5 588 1033 81 12 24 chrY 406222 406423 -15496132 + IAPEY_LTR LTR ERVK 1 293 -92 5 588 1036 86 36 0 chrY 406501 406641 -15495914 - B1_Mm SINE Alu -2 145 1 5 588 25 0 0 0 chrY 406650 406675 -15495880 + AT_rich Low_complexity Low_complexity 1 25 0 5 588 2569 135 65 14 chrY 406676 407105 -15495450 - Lx3C LINE L1 -1 6975 6525 5 588 1628 165 22 7 chrY 407107 407381 -15495174 - ORR1A3 LTR MaLR -66 280 3 5 588 1373 243 31 28 chrY 407394 407746 -15494809 + Lx6 LINE L1 6839 7191 -269 5 588 400 303 100 9 chrY 407744 407954 -15494601 + Lx7 LINE L1 5899 6127 -1569 5 588 238 128 0 0 chrY 407953 407992 -15494563 - Lx2 LINE L1 -1169 5828 5790 5 588 4859 140 29 9 chrY 407992 408791 -15493764 - Lx2 LINE L1 0 6997 6183 5 588 1133 306 24 24 chrY 409031 409856 -15492699 + MMTV-int LTR ERVK 2879 3657 -3596 5 588 2866 94 5 2 chrY 409922 410317 -15492238 - MTA_Mm LTR MaLR 0 396 1 5 588 221 0 0 33 chrY 411761 411791 -15490764 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 588 2542 64 6 0 chrY 411804 412132 -15490423 + L1_Mus1 LINE L1 6238 6567 0 5 588 1034 75 30 0 chrY 412167 412301 -15490254 - B1_Mus1 SINE Alu -8 140 3 5 588 1443 59 5 16 chrY 412592 412781 -15489774 + B2_Mm2 SINE B2 1 187 -8 5 588 187 255 39 0 chrY 412813 412864 -15489691 + L4 LINE RTE 685 737 -1292 5 588 1029 103 7 7 chrY 413605 413751 -15488804 + B1_Mus1 SINE Alu 2 147 -1 5 588 22 0 0 0 chrY 413760 413782 -15488773 + AT_rich Low_complexity Low_complexity 1 22 0 5 588 3135 14 0 0 chrY 414429 414775 -15487780 + ORR1A0 LTR MaLR 1 346 0 5 588 12444 56 47 40 chrY 414775 416555 -15486000 + ORR1A0-int LTR MaLR 1 1792 0 5 588 3026 29 0 0 chrY 416555 416901 -15485654 + ORR1A0 LTR MaLR 1 346 0 5 588 5908 77 5 2 chrY 417176 417985 -15484570 + RLTR22_Mus LTR ERVK 1 811 -997 5 588 329 259 102 80 chrY 418181 418387 -15484168 + RMER12 LTR ERVK 1101 1244 -78 5 588 6788 176 115 34 chrY 421055 421368 -15481187 - RLTR21 LTR ERVK 0 1572 1305 5 588 459 0 0 0 chrY 421368 421419 -15481136 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 588 6788 176 115 34 chrY 421419 421463 -15481092 - RLTR21 LTR ERVK -268 1304 1246 5 588 684 67 0 0 chrY 421463 421553 -15481002 + (TCCA)n Simple_repeat Simple_repeat 1 90 0 5 588 6788 176 115 34 chrY 421553 422648 -15479907 - RLTR21 LTR ERVK -327 1245 3 5 588 604 132 0 186 chrY 423243 423383 -15479172 + ORR1B1 LTR MaLR 1 160 -234 5 588 400 85 17 0 chrY 423376 423435 -15479120 + ORR1B1 LTR MaLR 262 321 -8 5 588 609 206 7 75 chrY 423686 423703 -15478852 + ID_B1 SINE B4 79 215 -9 5 588 967 100 0 0 chrY 423703 423833 -15478722 + B1_Mus2 SINE Alu 9 138 -9 5 588 1008 172 16 26 chrY 424358 424549 -15478006 + RLTR23 LTR ERV1 236 424 -6 5 588 2365 114 3 14 chrY 425417 425781 -15476774 - RMER2 LTR ERV1 -206 361 2 5 588 682 335 52 53 chrY 425918 426903 -15475652 + MMERGLN-int LTR ERV1 3530 4218 -3338 5 588 1202 68 0 0 chrY 427107 427254 -15475301 + B1_Mus1 SINE Alu 2 148 0 5 588 234 200 22 0 chrY 427254 427299 -15475256 + GA-rich Low_complexity Low_complexity 1 46 0 5 588 957 102 0 139 chrY 427299 427376 -15475179 + L1VL4 LINE L1 753 818 -5484 5 588 1048 83 21 7 chrY 427376 427521 -15475034 + B1_Mm SINE Alu 1 147 0 5 588 957 102 0 139 chrY 427521 427694 -15474861 + L1VL4 LINE L1 819 968 -5334 5 588 12422 157 39 35 chrY 427696 429331 -15473224 + L1_Mur1 LINE L1 1930 3605 -2281 5 588 1402 70 43 0 chrY 429331 429351 -15473204 - B2_Mm1a SINE B2 0 193 174 5 588 180 0 0 0 chrY 429351 429371 -15473184 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 588 1402 70 43 0 chrY 429371 429535 -15473020 - B2_Mm1a SINE B2 -20 173 2 5 588 12422 157 39 35 chrY 429535 430592 -15471963 + L1_Mur1 LINE L1 3606 4631 -1255 5 588 1319 217 39 68 chrY 430583 431211 -15471344 + Lx2A1 LINE L1 5448 5805 -42 6 588 229 320 41 0 chrY 431386 431483 -15471072 + Lx2A1 LINE L1 6312 6412 -1232 6 588 1076 186 0 30 chrY 431483 431683 -15470872 - B2_Mm2 SINE B2 -1 194 1 6 588 852 186 0 105 chrY 431697 431907 -15470648 + B2_Mm2 SINE B2 1 188 -7 6 588 226 231 96 0 chrY 432174 432226 -15470329 - B4 SINE B4 -18 274 218 6 588 24 0 0 0 chrY 432564 432588 -15469967 + AT_rich Low_complexity Low_complexity 1 24 0 6 588 388 227 0 30 chrY 432605 432705 -15469850 - L1_Mur3 LINE L1 -2531 3349 3253 6 588 1092 67 0 0 chrY 432747 432882 -15469673 + B1_Mm SINE Alu 1 135 -12 6 588 245 27 54 0 chrY 432883 432920 -15469635 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 588 319 284 20 59 chrY 433119 433220 -15469335 - RSINE1 SINE B4 -61 104 8 6 588 537 156 0 0 chrY 434281 434377 -15468178 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 588 324 175 0 0 chrY 435908 435971 -15466584 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 588 23 33 0 0 chrY 436911 436941 -15465614 + AT_rich Low_complexity Low_complexity 1 30 0 6 588 216 173 52 26 chrY 437014 437091 -15465464 + A-rich Low_complexity Low_complexity 2 80 0 6 588 2112 101 3 45 chrY 438160 438493 -15464062 + ORR1A2 LTR MaLR 1 319 -8 6 588 370 232 59 49 chrY 438755 438922 -15463633 + Lx4A LINE L1 6780 6947 -26 6 588 252 86 0 0 chrY 438968 439003 -15463552 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 6 588 617 231 109 24 chrY 439874 440122 -15462433 + L1_Rod LINE L1 2619 2887 -2960 6 588 726 216 57 38 chrY 440150 440362 -15462193 + B3 SINE B2 1 216 0 6 588 420 327 115 17 chrY 440389 440563 -15461992 + B3 SINE B2 1 191 -25 6 588 3680 192 50 17 chrY 440616 441374 -15461181 + Lx5 LINE L1 6193 6975 -75 6 588 486 0 0 0 chrY 441409 441463 -15461092 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6 588 438 260 197 38 chrY 441498 441994 -15460561 + Lx9 LINE L1 7048 7622 -22 6 588 1463 58 16 11 chrY 442173 442364 -15460191 + B2_Mm2 SINE B2 2 193 -2 6 588 1526 235 209 24 chrY 442649 443282 -15459273 + L1_Rod LINE L1 5013 5762 -85 6 588 314 267 117 30 chrY 443282 443458 -15459097 + B3A SINE B2 3 194 -1 6 588 4596 171 18 7 chrY 443458 444336 -15458219 + Lx LINE L1 5043 5926 -1534 6 588 814 163 8 0 chrY 444310 444439 -15458116 + Lx LINE L1 6094 6223 -431 6 588 4025 147 41 23 chrY 444457 445190 -15457365 + Lx LINE L1 5906 6651 -3 6 588 186 209 0 0 chrY 445304 445347 -15457208 + A-rich Low_complexity Low_complexity 1 43 0 6 588 899 159 183 11 chrY 445729 445920 -15456635 + Lx9 LINE L1 6643 6866 -778 6 588 243 250 44 0 chrY 445931 445999 -15456556 - L1M4 LINE L1 -274 5910 5840 6 588 22 0 0 0 chrY 446034 446056 -15456499 + AT_rich Low_complexity Low_complexity 1 22 0 6 588 1530 151 175 18 chrY 446391 446734 -15455821 + RMER17C LTR ERVK 1 397 -13 6 588 282 90 60 0 chrY 446735 446802 -15455753 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 6 588 13395 165 93 61 chrY 446817 449953 -15452602 + RMER17C-int LTR ERVK 1 3238 0 6 588 1242 176 138 49 chrY 449953 450288 -15452267 + RMER17C LTR ERVK 1 368 -42 6 588 1436 155 47 133 chrY 450288 450733 -15451822 - RMER17C LTR ERVK 0 410 4 6 588 1242 176 138 49 chrY 450733 450767 -15451788 + RMER17C LTR ERVK 369 403 -7 6 588 3995 221 145 93 chrY 450767 453824 -15448731 - RMER17C-int LTR ERVK -24 3214 1 6 588 985 106 12 36 chrY 453825 453991 -15448564 - RMER17C LTR ERVK 0 410 249 6 588 2346 252 135 26 chrY 455214 456372 -15446183 + L1_Rod LINE L1 1608 2891 -2956 6 588 35980 62 6 27 chrY 456406 462013 -15440542 + L1Md_T LINE L1 99 5586 -297 6 588 8068 48 3 0 chrY 462013 463005 -15439550 + L1Md_T LINE L1 5587 6581 -1 6 588 229 130 109 0 chrY 463006 463052 -15439503 + L1_Rod LINE L1 2917 2967 -2880 6 588 2322 245 77 21 chrY 463096 463763 -15438792 + L1_Rod LINE L1 85 788 -6384 6 588 347 312 91 70 chrY 463768 463954 -15438601 + Lx7 LINE L1 6442 6631 -1065 6 588 570 311 138 56 chrY 463946 464396 -15438159 + Lx7 LINE L1 6822 7308 -388 6 588 347 233 15 30 chrY 464403 464536 -15438019 + T-rich Low_complexity Low_complexity 1 131 0 6 588 231 297 40 0 chrY 464678 464779 -15437776 + L1M4 LINE L1 5328 5432 -752 6 588 372 313 112 39 chrY 464820 465176 -15437379 + L1MA9 LINE L1 5559 5940 -372 6 588 31 68 0 0 chrY 465287 465346 -15437209 + AT_rich Low_complexity Low_complexity 1 59 0 6 588 952 31 15 8 chrY 465505 465635 -15436920 + B1_Mm SINE Alu 17 147 0 6 588 32 57 0 0 chrY 465641 465694 -15436861 + AT_rich Low_complexity Low_complexity 1 53 0 6 588 928 164 43 11 chrY 465808 465993 -15436562 + B2_Mm2 SINE B2 5 195 0 6 588 287 382 18 9 chrY 466150 466261 -15436294 + RSINE1 SINE B4 40 151 -14 6 588 24 0 0 0 chrY 466268 466292 -15436263 + AT_rich Low_complexity Low_complexity 1 24 0 6 588 874 258 46 5 chrY 466832 467027 -15435528 + B3 SINE B2 9 211 -5 6 588 1079 95 7 0 chrY 467092 467239 -15435316 + B1_Mus1 SINE Alu 1 148 0 6 588 246 128 0 0 chrY 467240 467279 -15435276 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 6 588 2035 59 11 22 chrY 467705 467981 -15434574 + L1Md_F2 LINE L1 6310 6582 0 6 588 22 35 0 0 chrY 468114 468143 -15434412 + AT_rich Low_complexity Low_complexity 1 29 0 6 588 1134 62 7 0 chrY 468195 468340 -15434215 + B1_Mm SINE Alu 2 147 0 6 588 206 30 91 0 chrY 468340 468373 -15434182 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 6 588 3526 157 53 8 chrY 468496 469114 -15433441 - Lx2 LINE L1 -96 6901 6256 6 588 687 260 0 0 chrY 469114 469264 -15433291 - B1_Mur4 SINE Alu 0 150 1 6 588 541 67 21 43 chrY 469626 469719 -15432836 - B1_Mus2 SINE Alu -11 136 46 6 588 1762 176 82 6 chrY 469735 470089 -15432466 - L1_Mur3 LINE L1 -138 5742 5362 6 588 895 240 107 15 chrY 470081 470352 -15432203 + Lx7 LINE L1 6930 7225 -471 6 588 646 310 84 88 chrY 470450 471073 -15431482 + RLTR18B LTR ERVK 5 608 -8 6 588 327 250 60 80 chrY 471476 471576 -15430979 - B4A SINE B4 -169 123 26 6 588 27 0 0 0 chrY 471788 471815 -15430740 + AT_rich Low_complexity Low_complexity 1 27 0 6 588 1082 75 0 0 chrY 472206 472340 -15430215 + B1_Mus1 SINE Alu 3 136 -12 6 588 1263 81 0 0 chrY 472361 472572 -15429983 + (GAAA)n Simple_repeat Simple_repeat 1 211 0 6 588 532 287 27 54 chrY 472784 473005 -15429550 + B3 SINE B2 2 216 0 6 588 25 95 0 0 chrY 473143 473217 -15429338 + AT_rich Low_complexity Low_complexity 1 74 0 6 588 264 59 0 0 chrY 473624 473658 -15428897 + (A)n Simple_repeat Simple_repeat 1 34 0 6 588 997 104 0 0 chrY 473757 473901 -15428654 + B1_Mus1 SINE Alu 5 148 0 6 588 396 0 0 0 chrY 473903 473947 -15428608 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 588 1085 83 0 7 chrY 474425 474564 -15427991 + B1_Mus2 SINE Alu 1 139 -8 6 588 221 0 0 33 chrY 474564 474594 -15427961 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 588 1484 22 43 5 chrY 475390 475575 -15426980 + B2_Mm1a SINE B2 2 193 0 6 588 938 72 57 14 chrY 475590 475730 -15426825 + B1_Mm SINE Alu 2 147 0 6 588 189 94 0 0 chrY 475730 475762 -15426793 + (A)n Simple_repeat Simple_repeat 1 32 0 6 588 369 301 93 47 chrY 475933 476062 -15426493 + B1_Mur1 SINE Alu 13 147 -2 6 588 720 231 109 69 chrY 476081 476463 -15426092 + RLTRETN_Mm LTR ERVK 5 393 0 6 588 339 136 0 0 chrY 476522 476581 -15425974 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 588 226 270 80 0 chrY 476741 476841 -15425714 + L1M LINE L1 5284 5391 -909 6 588 28 0 0 0 chrY 476861 476889 -15425666 + AT_rich Low_complexity Low_complexity 1 28 0 6 588 2972 113 42 36 chrY 477036 477539 -15425016 + RLTR19C LTR ERVK 1 506 0 6 588 347 389 62 7 chrY 477652 477797 -15424758 + RSINE1 SINE B4 13 165 0 6 588 1626 213 37 19 chrY 478305 478703 -15423852 + RLTR28 LTR ERVL 8 469 -55 6 588 9862 192 188 34 chrY 479285 481009 -15421546 + Lx4B LINE L1 868 3058 -2819 6 588 426 53 0 0 chrY 481009 481066 -15421489 + (CATA)n Simple_repeat Simple_repeat 2 58 0 6 588 9862 220 169 43 chrY 481066 481476 -15421079 + Lx4B LINE L1 3041 3575 -2305 6 588 249 242 43 43 chrY 481476 481545 -15421010 - MER46C DNA MER2_type -9 329 261 6 588 9862 220 169 43 chrY 481545 482480 -15420075 + Lx4B LINE L1 3576 4799 -1081 6 588 432 0 0 0 chrY 482480 482528 -15420027 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 588 9862 204 118 28 chrY 482528 484398 -15418157 + Lx4B LINE L1 4800 6727 -331 6 588 1566 199 36 22 chrY 484398 484763 -15417792 + RLTR18-int LTR ERVK 3200 3569 -1792 6 588 305 222 141 43 chrY 485277 485416 -15417139 + RLTR18B LTR ERVK 3 164 -348 6 588 228 271 157 0 chrY 485413 485483 -15417072 + RLTR18B LTR ERVK 402 482 -30 6 588 595 282 73 20 chrY 485526 485772 -15416783 + Lx7 LINE L1 7044 7302 -394 6 588 327 333 67 5 chrY 485976 486169 -15416386 - Lx8 LINE L1 -1163 6310 6106 6 588 309 290 108 62 chrY 486418 486885 -15415670 - L1_Mur1 LINE L1 -472 5819 5295 6 588 326 200 0 167 chrY 487234 487324 -15415231 + ID SINE ID 1 75 -149 6 588 378 277 20 10 chrY 487266 487368 -15415187 + BC1_Mm scRNA scRNA 17 119 -33 6 588 374 234 116 35 chrY 487369 487542 -15415013 - L1_Mur3 LINE L1 -4223 1657 1468 6 588 348 321 0 118 chrY 487579 487624 -15414931 + PB1D9 SINE Alu 1 45 -75 6 588 2927 29 6 0 chrY 487624 487968 -15414587 - ORR1A0 LTR MaLR 0 346 1 6 588 348 321 0 118 chrY 487968 488049 -15414506 + PB1D9 SINE Alu 46 112 -8 6 588 540 335 69 0 chrY 488076 488249 -15414306 + B4 SINE B4 108 292 0 6 588 26 30 0 0 chrY 488775 488808 -15413747 + AT_rich Low_complexity Low_complexity 1 33 0 6 588 265 145 0 31 chrY 489850 489914 -15412641 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 6 588 343 324 10 10 chrY 490055 490158 -15412397 - B1_Mur1 SINE Alu -17 132 30 6 588 27 73 0 0 chrY 490739 490794 -15411761 + AT_rich Low_complexity Low_complexity 1 55 0 6 588 523 286 122 0 chrY 491337 491526 -15411029 - B3 SINE B2 -2 214 3 7 588 22 35 0 0 chrY 491731 491760 -15410795 + AT_rich Low_complexity Low_complexity 1 29 0 7 588 881 239 10 19 chrY 491860 492069 -15410486 + B3 SINE B2 5 211 -5 7 588 240 111 0 0 chrY 492152 492188 -15410367 + (A)n Simple_repeat Simple_repeat 1 36 0 7 588 22 56 0 0 chrY 492805 492841 -15409714 + AT_rich Low_complexity Low_complexity 1 36 0 7 588 239 125 0 0 chrY 493224 493264 -15409291 + PB1 SINE Alu 87 126 -1 7 588 261 0 0 0 chrY 493911 493940 -15408615 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 588 401 290 165 27 chrY 495561 495749 -15406806 - B3 SINE B2 -1 215 2 7 588 309 216 118 26 chrY 495884 495960 -15406595 + B1_Mur2 SINE Alu 65 147 -2 7 588 353 212 71 0 chrY 495970 496055 -15406500 + B3 SINE B2 3 93 -123 7 588 410 236 66 40 chrY 496289 496418 -15406137 - B1_Mur4 SINE Alu -12 137 3 7 588 32 86 0 0 chrY 496592 496673 -15405882 + AT_rich Low_complexity Low_complexity 1 81 0 7 588 732 249 46 10 chrY 496997 497192 -15405363 + B3 SINE B2 5 206 -10 7 588 970 141 44 22 chrY 497268 497449 -15405106 + B2_Mm2 SINE B2 3 187 -8 7 588 870 264 135 31 chrY 497567 498018 -15404537 + Lx7 LINE L1 4817 5303 -577 7 588 775 249 7 13 chrY 498014 498219 -15404336 + Lx6 LINE L1 7106 7283 -177 7 588 29 47 0 0 chrY 498614 498657 -15403898 + AT_rich Low_complexity Low_complexity 1 43 0 7 588 490 293 135 52 chrY 498699 499479 -15403076 + Lx7 LINE L1 5284 6161 -1535 7 588 247 219 141 0 chrY 499505 499569 -15402986 + Lx7 LINE L1 6238 6310 -1163 7 588 249 356 0 15 chrY 499652 499786 -15402769 + Lx7 LINE L1 6370 6501 -972 7 588 585 42 0 0 chrY 499926 499998 -15402557 + (TCTCC)n Simple_repeat Simple_repeat 4 75 0 7 588 394 165 28 28 chrY 500000 500106 -15402449 + C-rich Low_complexity Low_complexity 1 106 0 1 588 252 0 0 0 chrY 500119 500149 -15402406 - B1_Mm SINE Alu -11 136 107 2 588 1266 61 0 0 chrY 500379 500543 -15402012 + (CCA)n Simple_repeat Simple_repeat 1 164 0 3 588 27 0 0 0 chrY 500989 501016 -15401539 + AT_rich Low_complexity Low_complexity 1 27 0 4 588 1055 96 108 6 chrY 501624 501791 -15400764 + B2_Mm2 SINE B2 1 184 -11 5 588 451 267 0 22 chrY 502206 502344 -15400211 - Tigger5 DNA MER2_type -127 2279 2145 6 588 534 234 47 54 chrY 503021 503170 -15399385 + B1_Mur1 SINE Alu 2 149 0 7 588 261 128 0 0 chrY 503170 503217 -15399338 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 8 588 439 245 55 28 chrY 503227 503336 -15399219 + B3 SINE B2 3 114 -102 9 588 714 256 33 19 chrY 503464 503675 -15398880 + B3 SINE B2 2 215 -1 1 588 654 236 35 123 chrY 503821 504024 -15398531 + B3 SINE B2 1 185 -31 1 588 765 322 133 8 chrY 504024 504287 -15398268 + ORR1D2 LTR MaLR 1 296 -74 1 588 378 94 0 0 chrY 504317 504381 -15398174 + (TCTG)n Simple_repeat Simple_repeat 2 65 0 1 588 195 69 0 0 chrY 504493 504522 -15398033 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 588 198 0 0 0 chrY 505277 505299 -15397256 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 588 22 56 0 0 chrY 505430 505466 -15397089 + AT_rich Low_complexity Low_complexity 1 36 0 1 588 391 370 8 0 chrY 506180 506299 -15396256 + RSINE1 SINE B4 44 163 -2 1 588 203 0 0 36 chrY 506654 506682 -15395873 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1 588 793 290 9 49 chrY 506701 506926 -15395629 + B3 SINE B2 1 216 0 1 588 414 0 0 0 chrY 506980 507026 -15395529 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 588 639 259 57 34 chrY 507028 507204 -15395351 + B3 SINE B2 32 211 -5 2 588 380 272 78 135 chrY 508019 508356 -15394199 - RLTR15 LTR ERVK -9 350 34 2 588 3505 34 56 41 chrY 508356 508824 -15393731 + IAPLTR2_Mm LTR ERVK 1 475 0 2 588 380 272 78 135 chrY 508824 508856 -15393699 - RLTR15 LTR ERVK -326 33 2 2 588 408 303 101 34 chrY 508856 509184 -15393371 + Lx9 LINE L1 7287 7636 -8 2 588 534 300 0 0 chrY 509262 509382 -15393173 + B1_Mur1 SINE Alu 23 142 -7 2 588 447 357 12 71 chrY 509553 509722 -15392833 - RSINE1 SINE B4 -1 164 6 2 588 2599 174 72 8 chrY 510005 510532 -15392023 + L1Md_F LINE L1 370 930 -5589 2 588 3151 80 2 0 chrY 510536 510962 -15391593 + L1_Mus1 LINE L1 6141 6567 0 2 588 585 277 0 14 chrY 511322 511465 -15391090 + B1_Mur1 SINE Alu 2 142 -7 2 588 676 143 0 0 chrY 511702 511807 -15390748 + B1_Mus1 SINE Alu 27 131 -17 3 588 381 246 33 50 chrY 511807 511821 -15390734 + ID_B1 SINE B4 107 223 -1 3 588 25 65 0 0 chrY 511931 511977 -15390578 + AT_rich Low_complexity Low_complexity 1 46 0 3 588 286 319 0 0 chrY 512009 512081 -15390474 + ID4 SINE ID 11 82 -1 3 588 22 56 0 0 chrY 513096 513132 -15389423 + AT_rich Low_complexity Low_complexity 1 36 0 3 588 1087 65 0 0 chrY 513181 513319 -15389236 + B1_Mus2 SINE Alu 2 139 -8 3 588 783 0 0 0 chrY 513319 513406 -15389149 + (CCAA)n Simple_repeat Simple_repeat 2 88 0 3 588 530 261 90 6 chrY 513411 513588 -15388967 - MER2 DNA MER2_type -1 344 153 3 588 32 43 0 0 chrY 513642 513688 -15388867 + AT_rich Low_complexity Low_complexity 1 46 0 3 588 280 0 24 24 chrY 513749 513790 -15388765 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3 588 1065 79 0 0 chrY 513794 513934 -15388621 - B1_Mm SINE Alu -7 140 1 4 588 30 45 0 0 chrY 514059 514103 -15388452 + AT_rich Low_complexity Low_complexity 1 44 0 4 588 205 270 0 0 chrY 514400 514463 -15388092 + A-rich Low_complexity Low_complexity 1 63 0 4 588 491 333 79 10 chrY 514502 514705 -15387850 + ID_B1 SINE B4 6 222 -2 4 588 239 122 24 0 chrY 514952 514993 -15387562 + ORR1A2 LTR MaLR 1 42 -285 4 588 1451 111 48 24 chrY 514991 515241 -15387314 + ORR1A2-int LTR MaLR 1708 1963 0 4 588 4233 90 85 25 chrY 515257 515966 -15386589 + RMER17A LTR ERVK 1 751 0 4 588 1053 68 7 26 chrY 516610 516761 -15385794 + B1_Mus1 SINE Alu 1 148 0 4 588 226 308 119 5 chrY 516822 517024 -15385531 + L1MC LINE L1 5075 5299 -847 4 588 402 319 12 30 chrY 517488 517656 -15384899 + L1MC1 LINE L1 6056 6220 -113 4 588 2097 134 63 18 chrY 518222 518617 -15383938 + Lx6 LINE L1 4303 4715 -1165 4 588 2276 186 97 29 chrY 518613 518731 -15383824 + Lx6 LINE L1 5140 5255 -625 4 588 515 80 57 0 chrY 518731 518819 -15383736 + L1_Mus3 LINE L1 6545 6637 -1 5 588 2276 186 97 29 chrY 518819 519225 -15383330 + Lx6 LINE L1 5256 5700 -180 4 588 1561 203 78 68 chrY 519226 519650 -15382905 + RLTR23 LTR ERV1 3 430 0 5 588 882 203 35 75 chrY 519650 519905 -15382650 + Lx6 LINE L1 5707 5951 -1509 4 588 1956 278 157 55 chrY 519905 520887 -15381668 + Lx6 LINE L1 6236 7317 -143 4 588 1001 161 48 16 chrY 520888 521077 -15381478 - B2_Mm2 SINE B2 0 195 1 5 588 470 221 0 51 chrY 521080 521237 -15381318 + Lx6 LINE L1 7312 7460 0 4 588 1309 98 11 5 chrY 521744 521929 -15380626 - B2_Mm1t SINE B2 -6 187 2 5 588 1556 59 0 0 chrY 522050 522237 -15380318 + B2_Mm1t SINE B2 2 188 -5 5 588 1808 191 70 8 chrY 522464 522849 -15379706 + Lx5 LINE L1 6640 7048 -2 5 588 25 31 0 0 chrY 523306 523338 -15379217 + AT_rich Low_complexity Low_complexity 1 32 0 5 588 213 290 28 42 chrY 523420 523435 -15379120 + B4 SINE B4 70 83 -209 5 588 256 228 68 34 chrY 523435 523494 -15379061 + B1_Mur4 SINE Alu 1 61 -89 5 588 366 114 0 0 chrY 523516 523586 -15378969 + (CAAG)n Simple_repeat Simple_repeat 2 71 0 5 588 453 261 65 40 chrY 524119 524134 -15378421 + B1_Mur2 SINE Alu 22 32 -117 6 588 234 0 0 0 chrY 524134 524160 -15378395 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 588 453 261 65 40 chrY 524160 524268 -15378287 + B1_Mur2 SINE Alu 33 148 -1 6 589 987 116 21 95 chrY 524933 525123 -15377432 + B2_Mm2 SINE B2 5 180 -15 6 589 303 28 0 0 chrY 525128 525164 -15377391 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 6 589 615 258 0 8 chrY 525386 525515 -15377040 + B1_Mur4 SINE Alu 3 130 -20 6 589 202 0 59 29 chrY 525521 525555 -15377000 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6 589 29963 50 14 4 chrY 526132 529997 -15372558 + L1Md_T LINE L1 1683 5586 -297 6 589 8382 35 0 0 chrY 529997 531024 -15371531 + L1Md_T LINE L1 5587 6582 0 6 589 6008 61 1 23 chrY 531024 531812 -15370743 + L1Md_F2 LINE L1 5800 6570 -12 6 589 687 238 132 6 chrY 532240 532422 -15370133 - B3 SINE B2 -10 206 2 6 589 1106 156 65 18 chrY 532567 532796 -15369759 - RLTR22_Mur LTR ERVK 0 1848 1609 6 589 228 163 0 0 chrY 533373 533416 -15369139 + A-rich Low_complexity Low_complexity 1 43 0 7 589 528 149 0 0 chrY 533515 533609 -15368946 + (GGGA)n Simple_repeat Simple_repeat 3 96 0 7 589 293 364 0 39 chrY 533987 534090 -15368465 - ID_B1 SINE B4 -39 185 87 7 589 227 291 256 0 chrY 534367 534453 -15368102 - PB1D9 SINE Alu -11 109 2 7 589 237 371 60 0 chrY 534481 534597 -15367958 + B3 SINE B2 91 213 -3 7 589 251 282 27 27 chrY 534620 534693 -15367862 + B3A SINE B2 5 77 -121 7 589 357 131 0 0 chrY 534773 534834 -15367721 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 589 25 0 0 0 chrY 535214 535239 -15367316 + AT_rich Low_complexity Low_complexity 1 25 0 7 589 2360 174 92 15 chrY 535404 535881 -15366674 + RMER20A LTR ERVK 3 516 0 7 589 280 185 37 0 chrY 536021 536075 -15366480 + B3A SINE B2 1 56 -142 7 589 459 133 13 0 chrY 536076 536151 -15366404 - RLTR11A LTR ERVK -3 525 450 8 589 1556 253 41 168 chrY 536164 536471 -15366084 + L1_Mus2 LINE L1 271 527 -6111 8 589 1050 103 0 0 chrY 536471 536617 -15365938 + B1_Mus1 SINE Alu 1 146 -2 8 589 279 71 0 0 chrY 536617 536659 -15365896 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 8 589 27554 154 27 84 chrY 536659 537833 -15364722 + L1_Mus2 LINE L1 528 1556 -4327 8 589 1549 52 0 20 chrY 537833 538030 -15364525 + B2_Mm1a SINE B2 1 193 0 8 589 27554 100 62 32 chrY 538030 541541 -15361014 + L1_Mus2 LINE L1 1557 5234 -649 8 589 315 0 0 0 chrY 541541 541576 -15360979 + (TA)n Simple_repeat Simple_repeat 1 35 0 8 589 27554 83 22 22 chrY 541576 542909 -15359646 + L1_Mus2 LINE L1 5235 6566 0 8 589 2256 165 80 5 chrY 542911 543338 -15359217 - RLTR11A LTR ERVK -67 461 3 8 589 539 266 104 0 chrY 543338 543489 -15359066 + B3 SINE B2 50 216 0 7 589 546 233 45 0 chrY 543507 543640 -15358915 + B1_Mur1 SINE Alu 1 139 -10 8 589 1613 205 37 27 chrY 544140 544546 -15358009 + RMER17C LTR ERVK 1 410 0 8 589 684 0 0 0 chrY 544583 544659 -15357896 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 8 589 804 39 0 0 chrY 544663 544767 -15357788 + (GA)n Simple_repeat Simple_repeat 1 104 0 8 589 322 364 38 54 chrY 544931 545117 -15357438 + MER54A LTR ERVL 375 557 -344 9 589 429 347 95 101 chrY 545528 545874 -15356681 + MER54A LTR ERVL 548 891 -10 9 589 26 0 0 0 chrY 545964 545990 -15356565 + AT_rich Low_complexity Low_complexity 1 26 0 9 589 688 326 53 4 chrY 546063 546288 -15356267 + B4A SINE B4 5 240 -52 9 589 1238 288 86 15 chrY 546398 546853 -15355702 + MuRRS4-int LTR ERV1 3545 4031 -1032 9 589 462 139 163 0 chrY 547416 547502 -15355053 + RLTR23 LTR ERV1 1 100 -330 9 589 226 47 45 23 chrY 547506 547550 -15355005 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 9 589 1264 102 10 26 chrY 547553 547745 -15354810 + B2_Mm1t SINE B2 2 190 -3 9 589 651 230 89 18 chrY 547765 547933 -15354622 + RLTR23 LTR ERV1 89 268 -162 9 589 1488 118 14 109 chrY 547911 548205 -15354350 + RLTR23 LTR ERV1 165 430 0 9 589 311 246 106 41 chrY 548205 548319 -15354236 + B1F2 SINE Alu 28 149 0 9 589 1115 220 83 83 chrY 548728 548901 -15353654 + ORR1B2 LTR MaLR 1 189 -178 9 589 1582 47 5 0 chrY 548901 549092 -15353463 + B2_Mm1a SINE B2 1 192 -1 9 589 1115 220 83 83 chrY 549092 549245 -15353310 + ORR1B2 LTR MaLR 190 327 -40 9 589 4834 192 91 27 chrY 549248 550635 -15351920 + Lx4B LINE L1 5174 6636 -422 1 589 1148 61 0 7 chrY 550635 550783 -15351772 + B1_Mm SINE Alu 1 147 0 1 589 4834 201 165 35 chrY 550783 551105 -15351450 + Lx4B LINE L1 6637 7053 -5 1 589 232 208 0 59 chrY 551119 551170 -15351385 + ORR1B2 LTR MaLR 312 359 -8 9 589 1143 204 119 13 chrY 551453 551520 -15351035 + RLTR40 LTR ERVK 21 96 -721 1 589 1177 120 33 0 chrY 551520 551703 -15350852 + B2_Mm2 SINE B2 1 189 -6 1 589 1143 204 119 13 chrY 551703 551947 -15350608 + RLTR40 LTR ERVK 97 365 -452 1 589 1985 213 26 8 chrY 551946 552348 -15350207 + MTC LTR MaLR 9 407 -14 1 589 22 35 0 0 chrY 552405 552434 -15350121 + AT_rich Low_complexity Low_complexity 1 29 0 1 589 22 35 0 0 chrY 552512 552541 -15350014 + AT_rich Low_complexity Low_complexity 1 29 0 1 589 1087 226 91 56 chrY 552572 552891 -15349664 + RLTR40 LTR ERVK 419 748 -69 1 589 665 191 41 62 chrY 553391 553536 -15349019 + B1_Mus1 SINE Alu 7 148 0 1 589 756 110 42 0 chrY 553571 553689 -15348866 + B2_Mm2 SINE B2 73 195 0 1 589 486 49 0 0 chrY 553719 553780 -15348775 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1 589 343 241 138 0 chrY 553882 553969 -15348586 + B3A SINE B2 1 99 -99 1 589 3119 185 10 154 chrY 554278 554383 -15348172 + RLTR33 LTR ERVK 6 108 -570 1 589 216 0 0 0 chrY 554383 554407 -15348148 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 589 1137 75 0 13 chrY 554410 554559 -15347996 - B1_Mus1 SINE Alu 0 148 2 1 589 3119 185 10 154 chrY 554559 554670 -15347885 + RLTR33 LTR ERVK 109 188 -490 1 589 873 98 114 0 chrY 554670 554802 -15347753 + B1_Mus1 SINE Alu 1 147 -1 1 589 3119 185 10 154 chrY 554802 555366 -15347189 + RLTR33 LTR ERVK 189 678 0 1 589 590 177 161 0 chrY 556303 556427 -15346128 + B1_Mur4 SINE Alu 1 144 -6 1 589 180 125 0 0 chrY 556468 556500 -15346055 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1 589 1151 130 11 0 chrY 556534 556711 -15345844 + B2_Mm1t SINE B2 1 179 -14 1 589 2573 137 274 94 chrY 556855 557620 -15344935 + RMER17A2 LTR ERVK 1 903 -3 1 589 969 82 8 0 chrY 558036 558170 -15344385 + B1_Mus2 SINE Alu 1 135 -12 1 589 2763 238 108 69 chrY 558449 559278 -15343277 + L1_Mur3 LINE L1 855 1670 -4210 1 589 639 151 159 0 chrY 559278 559404 -15343151 + B1_Mur4 SINE Alu 5 150 0 1 589 2763 199 134 59 chrY 559404 560049 -15342506 + L1_Mur3 LINE L1 1671 2396 -3484 1 589 299 370 112 37 chrY 560064 560252 -15342303 + MTE2b LTR MaLR 90 291 -88 1 589 25 31 0 0 chrY 560648 560680 -15341875 + AT_rich Low_complexity Low_complexity 1 32 0 1 589 221 70 52 17 chrY 560820 560878 -15341677 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 1 589 21 36 0 0 chrY 560990 561018 -15341537 + AT_rich Low_complexity Low_complexity 1 28 0 1 589 240 258 30 0 chrY 561241 561307 -15341248 + RMER5 LTR ERV1 194 261 -273 1 589 699 261 28 6 chrY 561683 561860 -15340695 + B3A SINE B2 1 181 -17 1 589 281 221 0 68 chrY 561996 562069 -15340486 + MT2B LTR ERVL 197 264 -337 1 589 742 71 0 0 chrY 562005 562104 -15340451 + B1_Mus2 SINE Alu 49 147 0 1 589 405 260 130 38 chrY 562194 562389 -15340166 - B3 SINE B2 0 195 1 1 589 2925 182 52 35 chrY 562729 562996 -15339559 + Lx9 LINE L1 5896 6245 -1399 1 589 2781 29 6 55 chrY 562996 563360 -15339195 + ORR1A0 LTR MaLR 1 346 0 1 589 2925 229 78 44 chrY 563360 564174 -15338381 + Lx9 LINE L1 6246 7117 -527 1 589 473 200 30 10 chrY 564216 564317 -15338238 + RLTR12B LTR ERVK 1 103 -425 1 589 937 70 108 0 chrY 564828 564957 -15337598 + B1_Mm SINE Alu 5 147 0 1 589 765 84 0 0 chrY 564958 565077 -15337478 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 1 589 734 173 123 0 chrY 565254 565416 -15337139 + L1_Mur2 LINE L1 768 949 -6137 1 589 19287 124 82 74 chrY 565410 565737 -15336818 + L1_Mur2 LINE L1 1438 1751 -4126 1 589 1288 88 16 16 chrY 565737 565922 -15336633 + B2_Mm2 SINE B2 3 187 -8 1 589 942 61 121 8 chrY 565923 566055 -15336500 + B1_Mus1 SINE Alu 2 148 0 1 589 19287 124 82 74 chrY 566055 566362 -15336193 + L1_Mur2 LINE L1 1752 2072 -3805 1 589 1060 102 0 0 chrY 566362 566509 -15336046 + B1_Mm SINE Alu 1 147 0 1 589 19287 124 82 74 chrY 566509 568980 -15333575 + L1_Mur2 LINE L1 2073 4733 -1144 1 589 1421 79 5 0 chrY 568980 569169 -15333386 + B2_Mm1t SINE B2 2 191 -2 1 589 19287 124 82 74 chrY 569169 569692 -15332863 + L1_Mur2 LINE L1 4734 5281 -596 1 589 1069 165 82 0 chrY 569692 569886 -15332669 - ORR1A3-int LTR MaLR -1296 667 458 1 589 19287 124 82 74 chrY 569886 570197 -15332358 + L1_Mur2 LINE L1 5282 5608 -269 1 589 249 161 16 111 chrY 570197 570260 -15332295 + RLTR1 LTR ERV1 42 98 -526 1 589 2298 169 51 73 chrY 570209 570700 -15331855 + ORR1A4-int LTR MaLR 265 744 -1219 1 589 3887 142 27 120 chrY 570701 571509 -15331046 + ORR1A4-int LTR MaLR 1231 1963 0 1 589 1585 138 103 0 chrY 571509 571800 -15330755 + ORR1A4 LTR MaLR 1 321 -8 1 589 712 205 68 0 chrY 571801 571962 -15330593 + L1_Rod LINE L1 5651 5822 -25 1 589 263 65 31 46 chrY 572019 572084 -15330471 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 1 589 1953 94 41 20 chrY 572127 572419 -15330136 + MTB LTR MaLR 103 400 0 1 589 1503 220 6 29 chrY 572419 572732 -15329823 - RLTR20B2 LTR ERVK -254 306 1 1 589 431 241 190 0 chrY 572809 572925 -15329630 + B1_Mur1 SINE Alu 12 149 0 1 589 234 196 0 0 chrY 572925 572971 -15329584 + A-rich Low_complexity Low_complexity 1 46 0 1 589 1116 120 15 40 chrY 572993 573175 -15329380 + B2_Mm2 SINE B2 1 176 -19 1 589 3352 77 31 0 chrY 573175 573628 -15328927 + L1_Mus1 LINE L1 6101 6567 0 1 589 1116 120 15 40 chrY 573628 573645 -15328910 + B2_Mm2 SINE B2 177 194 -1 1 589 1098 82 0 0 chrY 573834 573981 -15328574 - B1_Mus1 SINE Alu 0 148 2 1 589 968 114 82 24 chrY 574000 574170 -15328385 - B2_Mm2 SINE B2 -14 181 2 1 589 438 196 0 30 chrY 574351 574451 -15328104 + MER82 DNA MER2_type 156 252 -401 1 589 653 198 15 38 chrY 574449 574580 -15327975 + B1_Mus1 SINE Alu 14 141 -7 1 589 180 0 0 0 chrY 574580 574600 -15327955 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 589 1135 68 0 0 chrY 574623 574769 -15327786 + B1_Mm SINE Alu 2 147 0 1 589 456 140 0 39 chrY 575063 575167 -15327388 + L1Md_F3 LINE L1 6469 6568 -16 1 589 26 64 0 0 chrY 575170 575217 -15327338 + AT_rich Low_complexity Low_complexity 1 47 0 1 589 481 232 126 4 chrY 575453 575588 -15326967 - B1F2 SINE Alu -1 148 3 1 589 1651 21 0 0 chrY 575814 576001 -15326554 + B2_Mm1t SINE B2 2 188 -5 1 589 25 31 0 0 chrY 576109 576141 -15326414 + AT_rich Low_complexity Low_complexity 1 32 0 1 589 1109 91 73 0 chrY 576391 576556 -15325999 - B2_Mm2 SINE B2 -10 185 9 1 589 219 69 0 0 chrY 576884 576913 -15325642 + (A)n Simple_repeat Simple_repeat 1 29 0 1 589 629 129 0 0 chrY 576986 577087 -15325468 + BC1_Mm scRNA scRNA 1 101 -51 1 589 230 364 141 0 chrY 577080 577201 -15325354 + ORR1D1 LTR MaLR 16 153 -221 1 589 1117 88 7 0 chrY 577501 577648 -15324907 + B1_Mus1 SINE Alu 1 148 0 1 589 235 128 0 25 chrY 577697 577737 -15324818 - B2_Mm2 SINE B2 -110 85 47 1 589 1254 85 34 0 chrY 577754 577930 -15324625 - B2_Mm2 SINE B2 -13 182 1 1 589 233 179 0 164 chrY 577952 578019 -15324536 + B1F SINE Alu 92 147 -2 1 589 465 111 26 59 chrY 578020 578173 -15324382 + GA-rich Low_complexity Low_complexity 3 150 0 1 589 262 91 36 0 chrY 578184 578239 -15324316 + (TTA)n Simple_repeat Simple_repeat 1 57 0 1 589 726 214 35 0 chrY 578408 578553 -15324002 - B1_Mur4 SINE Alu 0 150 1 1 589 633 196 52 8 chrY 578569 578703 -15323852 - B1_Mur4 SINE Alu -6 144 5 1 589 1642 11 21 0 chrY 578739 578926 -15323629 - B2_Mm1a SINE B2 -1 192 2 1 589 353 304 11 17 chrY 578994 579091 -15323464 + B1F SINE Alu 9 99 -21 1 589 725 192 124 6 chrY 579091 579269 -15323286 + URR1A DNA MER1_type 1 199 -27 1 589 464 240 128 13 chrY 579511 579667 -15322888 + B3 SINE B2 40 213 -3 1 589 316 284 0 0 chrY 579701 579768 -15322787 + RSINE1 SINE B4 67 133 -32 1 589 21 36 0 0 chrY 579768 579796 -15322759 + AT_rich Low_complexity Low_complexity 1 28 0 1 589 1137 82 0 0 chrY 580028 580174 -15322381 + B1_Mm SINE Alu 2 147 0 1 589 32 0 0 0 chrY 580174 580206 -15322349 + AT_rich Low_complexity Low_complexity 1 32 0 1 589 360 152 0 0 chrY 580427 580493 -15322062 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 589 246 116 0 0 chrY 580518 580561 -15321994 + B1_Mm SINE Alu 105 147 0 1 589 1165 68 0 0 chrY 580727 580874 -15321681 - B1_Mus2 SINE Alu 0 147 1 1 589 28 29 0 0 chrY 582990 583025 -15319530 + AT_rich Low_complexity Low_complexity 1 35 0 1 589 1114 92 43 0 chrY 583557 583721 -15318834 + B2_Mm2 SINE B2 23 193 -2 1 589 1021 88 7 0 chrY 583726 583862 -15318693 + B1_Mus2 SINE Alu 1 137 -10 1 589 315 0 0 0 chrY 583862 583897 -15318658 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 589 1247 204 77 16 chrY 584273 584691 -15317864 - RMER10B LTR ERVL -42 400 1 1 589 322 231 81 31 chrY 584790 584951 -15317604 - RMER17B LTR ERVK -499 459 291 1 589 222 351 62 21 chrY 585017 585113 -15317442 + B1_Mur2 SINE Alu 10 109 -40 1 589 519 335 67 26 chrY 585317 585584 -15316971 + RLTR19C LTR ERVK 229 506 0 1 589 1090 92 0 0 chrY 585669 585810 -15316745 + B1_Mus1 SINE Alu 1 141 -7 1 589 318 343 50 0 chrY 585853 585952 -15316603 + B1_Mur2 SINE Alu 3 106 -43 1 589 614 215 38 8 chrY 586234 586365 -15316190 - B1_Mus1 SINE Alu 0 148 14 1 589 568 262 23 53 chrY 586400 586456 -15316099 - B3 SINE B2 -86 130 81 1 589 8450 23 1 0 chrY 586456 587413 -15315142 - RLTR13A2 LTR ERVK 0 958 1 1 589 568 262 23 53 chrY 587413 587489 -15315066 - B3 SINE B2 -136 80 2 1 589 425 328 47 0 chrY 587777 587905 -15314650 - RSINE1 SINE B4 -31 134 1 1 589 1357 85 16 0 chrY 588054 588243 -15314312 - B2_Mm1t SINE B2 0 193 2 2 589 395 259 143 25 chrY 588333 588452 -15314103 + RLTR30 LTR ERV1 52 184 -195 2 589 667 107 78 0 chrY 588857 588960 -15313595 - B2_Mm2 SINE B2 -83 112 2 2 589 622 202 143 30 chrY 588996 589164 -15313391 + RLTR30 LTR ERV1 193 379 0 2 589 210 258 0 38 chrY 589178 589231 -15313324 - PB1D10 SINE Alu -52 65 15 2 589 445 265 51 8 chrY 589290 589408 -15313147 + MT2A LTR ERVL 6 128 -405 2 589 230 209 0 0 chrY 589963 590006 -15312549 + B1_Mur1 SINE Alu 99 141 -8 2 589 351 167 0 0 chrY 590045 590111 -15312444 + GA-rich Low_complexity Low_complexity 2 67 0 2 589 961 123 6 78 chrY 590164 590195 -15312360 + RLTR23 LTR ERV1 276 303 -127 2 589 1328 141 70 94 chrY 590195 590525 -15312030 + RLTRETN_Mm LTR ERVK 1 322 0 2 589 961 123 6 78 chrY 590525 590570 -15311985 + RLTR23 LTR ERV1 304 343 -87 2 589 1711 159 192 63 chrY 590570 590965 -15311590 - RLTR41 LTR ERV1 0 446 1 2 589 961 123 6 78 chrY 590965 591054 -15311501 + RLTR23 LTR ERV1 344 430 0 2 589 24 53 0 0 chrY 591109 591147 -15311408 + AT_rich Low_complexity Low_complexity 1 38 0 2 589 466 272 53 0 chrY 591231 591345 -15311210 - RMER15 LTR ERVL 0 575 456 2 589 682 181 101 7 chrY 591348 591487 -15311068 + ORR1B1 LTR MaLR 243 394 0 2 589 1513 243 68 74 chrY 591487 591944 -15310611 - RMER15 LTR ERVL -92 483 30 2 589 1813 156 29 55 chrY 592034 592455 -15310100 - RMER17C LTR ERVK 0 410 1 2 589 2014 220 78 42 chrY 592590 593063 -15309492 - RLTR19-int LTR ERVK -3140 2997 2504 2 589 1371 87 16 0 chrY 593063 593246 -15309309 + B2_Mm2 SINE B2 2 187 -8 2 589 639 0 0 0 chrY 593246 593317 -15309238 + (AATAG)n Simple_repeat Simple_repeat 5 75 0 2 589 2014 220 78 42 chrY 593317 593392 -15309163 - RLTR19-int LTR ERVK -3634 2503 2429 2 589 294 170 132 0 chrY 593462 593515 -15309040 - B1_Mus1 SINE Alu -88 60 1 2 589 5400 216 84 38 chrY 593577 594947 -15307608 + RodERV21-int LTR ERV1 3245 4677 -314 2 589 280 136 76 0 chrY 594980 595046 -15307509 + CT-rich Low_complexity Low_complexity 2 72 0 2 589 486 174 45 27 chrY 595068 595083 -15307472 + RodERV21-int LTR ERV1 4644 4663 -328 2 589 1569 42 11 0 chrY 595083 595273 -15307282 - B2_Mm1t SINE B2 0 193 2 2 589 486 174 45 27 chrY 595273 595369 -15307186 + RodERV21-int LTR ERV1 4664 4757 -234 2 589 338 236 106 11 chrY 595407 595501 -15307054 + RMER4B LTR ERVK 351 453 -132 2 589 198 0 0 0 chrY 595509 595531 -15307024 + (A)n Simple_repeat Simple_repeat 1 22 0 2 589 234 137 19 56 chrY 595558 595612 -15306943 + RMER21B LTR ERV1 314 365 -477 2 589 922 259 186 31 chrY 595620 595974 -15306581 - Lx7 LINE L1 -595 7101 6693 2 589 867 75 0 8 chrY 595983 596104 -15306451 + B1_Mus1 SINE Alu 23 142 -6 2 589 435 267 50 8 chrY 596437 596558 -15305997 + B1_Mur1 SINE Alu 24 149 0 2 589 1020 131 39 22 chrY 596696 596876 -15305679 - B2_Mm1t SINE B2 -10 183 1 2 589 1034 95 0 7 chrY 596960 597108 -15305447 - B1_Mm SINE Alu 0 147 1 2 589 237 132 0 0 chrY 597987 598025 -15304530 + (T)n Simple_repeat Simple_repeat 1 38 0 2 589 1002 129 0 0 chrY 598025 598172 -15304383 - B1_Mm SINE Alu 0 147 1 2 589 216 0 0 0 chrY 598756 598780 -15303775 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 589 293 0 27 0 chrY 599961 599998 -15302557 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 589 565 241 45 8 chrY 600565 600699 -15301856 - B1_Mur1 SINE Alu -1 148 10 2 589 276 83 0 77 chrY 600825 600877 -15301678 - B1_Mm SINE Alu -3 144 97 2 589 198 0 0 0 chrY 601038 601060 -15301495 + (A)n Simple_repeat Simple_repeat 1 22 0 2 589 304 351 112 43 chrY 601074 601190 -15301365 + RSINE1 SINE B4 42 165 0 2 589 266 337 67 0 chrY 601789 601878 -15300677 + B4A SINE B4 136 230 -62 2 589 550 231 153 7 chrY 603200 603344 -15299211 - B3 SINE B2 -5 211 47 2 589 275 366 21 0 chrY 603445 603538 -15299017 + B3 SINE B2 118 212 -4 2 589 272 289 205 66 chrY 603677 603799 -15298756 + ID_B1 SINE B4 78 216 -8 2 589 365 183 42 0 chrY 603819 603890 -15298665 + PB1D9 SINE Alu 47 120 0 2 589 409 232 196 0 chrY 604005 604117 -15298438 - B1_Mur2 SINE Alu -12 137 4 2 589 770 170 27 21 chrY 604525 604694 -15297861 + ORR1C2 LTR MaLR 1 172 -187 2 589 711 0 0 0 chrY 604694 604773 -15297782 + (TTTC)n Simple_repeat Simple_repeat 4 82 0 2 589 324 331 53 63 chrY 604773 604793 -15297762 + ORR1C2 LTR MaLR 173 188 -171 2 589 528 16 0 0 chrY 605404 605465 -15297090 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 589 1198 41 7 0 chrY 605466 605613 -15296942 - B1_Mus1 SINE Alu 0 148 1 2 589 675 235 41 24 chrY 605681 605851 -15296704 + ORR1C2 LTR MaLR 174 346 -38 2 589 366 290 112 8 chrY 605858 605983 -15296572 + B1_Mur2 SINE Alu 10 147 -2 2 589 310 132 19 0 chrY 605992 606045 -15296510 + ORR1C1 LTR MaLR 324 377 -1 2 589 723 274 39 0 chrY 606533 606712 -15295843 + B3 SINE B2 28 213 -3 2 589 305 269 0 29 chrY 606698 606713 -15295842 + B4A SINE B4 74 86 -206 2 589 298 243 103 37 chrY 606713 606820 -15295735 + B1F2 SINE Alu 2 115 -2 2 589 225 0 0 0 chrY 607067 607092 -15295463 + (A)n Simple_repeat Simple_repeat 1 25 0 2 589 2347 229 99 20 chrY 607116 607810 -15294745 + Lx9 LINE L1 6398 7146 -498 2 589 871 155 106 0 chrY 607823 607984 -15294571 + B2_Mm1t SINE B2 2 179 -14 2 589 189 94 0 0 chrY 608070 608102 -15294453 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 2 589 2140 133 3 0 chrY 608231 608539 -15294016 + RLTR27 LTR ERVK 1 309 0 2 589 360 78 37 0 chrY 608563 608617 -15293938 + RLTR10-int LTR ERVK 162 267 -7314 2 589 521 208 98 128 chrY 608649 608853 -15293702 + RLTR10-int LTR ERVK 655 852 -1135 2 589 223 172 0 79 chrY 608853 608916 -15293639 + A-rich Low_complexity Low_complexity 2 59 0 2 589 372 94 0 0 chrY 609157 609210 -15293345 + (A)n Simple_repeat Simple_repeat 1 53 0 2 589 5005 317 35 36 chrY 609280 613627 -15288928 + MMERVK10C-int LTR ERVK 705 5477 -2104 2 589 1470 234 40 30 chrY 614124 614689 -15287866 + MMERVK10C-int LTR ERVK 6907 7581 0 2 589 2248 92 13 0 chrY 614689 614994 -15287561 + RLTR27 LTR ERVK 1 309 0 2 589 355 307 23 0 chrY 615673 615761 -15286794 - B3A SINE B2 -107 91 2 2 589 627 279 130 79 chrY 616246 616671 -15285884 + MT2A LTR ERVL 29 595 -6 2 589 212 296 122 40 chrY 617253 617327 -15285228 + ID SINE ID 4 83 -141 2 589 1133 111 44 11 chrY 617761 617944 -15284611 + B2_Mm2 SINE B2 1 189 -6 2 589 245 347 30 30 chrY 617980 618081 -15284474 - ID_B1 SINE B4 -8 216 116 2 589 568 225 231 0 chrY 618620 618789 -15283766 - B3 SINE B2 -8 208 1 2 589 720 163 108 0 chrY 618988 619117 -15283438 - B1_Mur4 SINE Alu -6 144 2 2 589 670 259 73 15 chrY 620967 621171 -15281384 + B3 SINE B2 1 216 0 2 589 536 297 78 36 chrY 621550 621742 -15280813 + B3 SINE B2 17 216 0 2 589 494 212 111 72 chrY 621760 621931 -15280624 + B3 SINE B2 4 183 -10 2 589 22 0 0 0 chrY 622092 622114 -15280441 + AT_rich Low_complexity Low_complexity 1 22 0 2 589 577 161 94 24 chrY 622193 622320 -15280235 + B1_Mur3 SINE Alu 1 136 -13 2 589 584 176 141 16 chrY 623967 624088 -15278467 - B1_Mur2 SINE Alu -13 136 1 2 589 7221 134 35 6 chrY 624153 626200 -15276355 - L1_Mus4 LINE L1 0 6636 4519 2 589 414 0 0 0 chrY 626212 626258 -15276297 + (CAA)n Simple_repeat Simple_repeat 1 46 0 2 589 6353 131 10 3 chrY 626258 627283 -15275272 + L1_Mur2 LINE L1 3490 4521 -1356 2 589 354 23 0 0 chrY 627292 627335 -15275220 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 589 1044 99 0 0 chrY 628397 628548 -15274007 + (TTCC)n Simple_repeat Simple_repeat 1 151 0 2 589 667 274 90 15 chrY 628761 629204 -15273351 + L1MA4 LINE L1 5428 5954 -1104 2 589 357 182 0 0 chrY 629207 629306 -15273249 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 589 320 293 110 32 chrY 629309 629464 -15273091 + HAL1-3A_ME LINE L1 1976 2142 -716 2 589 3118 39 36 5 chrY 629726 630110 -15272445 - MTA_Mm LTR MaLR 0 396 1 2 589 1098 149 37 5 chrY 630732 630921 -15271634 + URR1B DNA MER1_type 30 224 -1 2 589 511 260 303 4 chrY 631423 631658 -15270897 + RMER15 LTR ERVL 271 575 0 2 589 2257 79 3 54 chrY 632893 633243 -15269312 + IAPLTR1a_Mm LTR ERVK 1 332 -5 2 589 225 36 0 0 chrY 633245 633273 -15269282 - L1_Mus1 LINE L1 -600 6038 6011 2 589 3332 68 93 2 chrY 633273 633746 -15268809 + L1_Mus1 LINE L1 6051 6566 -1 2 589 8370 34 4 0 chrY 634231 635222 -15267333 + L1Md_F2 LINE L1 5588 6582 0 2 589 929 266 27 88 chrY 636385 636822 -15265733 + Lx7 LINE L1 5547 5961 -1735 2 589 1346 94 16 5 chrY 636919 637111 -15265444 + B2_Mm2 SINE B2 2 195 0 2 589 478 298 50 6 chrY 637253 637412 -15265143 + Lx7 LINE L1 6582 6747 -726 2 589 693 209 22 58 chrY 637592 637816 -15264739 + Lx LINE L1 6439 6654 0 2 589 285 239 21 54 chrY 637846 637972 -15264583 + (TTATA)n Simple_repeat Simple_repeat 1 120 0 2 589 1373 87 38 0 chrY 637972 638157 -15264398 - B2_Mm2 SINE B2 -3 192 1 2 589 285 239 21 54 chrY 638157 638216 -15264339 + (TTATA)n Simple_repeat Simple_repeat 2 60 0 2 589 735 319 113 20 chrY 638245 638590 -15263965 + Lx7 LINE L1 6916 7292 -181 2 589 399 255 10 30 chrY 638627 638728 -15263827 + PB1D9 SINE Alu 3 101 -19 2 589 338 329 74 14 chrY 638815 638963 -15263592 + RSINE1 SINE B4 3 159 -6 2 589 217 301 39 64 chrY 639031 639109 -15263446 - RSINE1 SINE B4 -47 118 43 2 589 240 35 0 0 chrY 639164 639193 -15263362 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 589 256 191 64 0 chrY 639987 640034 -15262521 + B1F SINE Alu 88 137 -12 2 589 39 22 0 0 chrY 640096 640142 -15262413 + AT_rich Low_complexity Low_complexity 1 46 0 2 589 346 254 96 9 chrY 640293 640408 -15262147 - B1_Mur1 SINE Alu 0 149 25 3 589 738 149 98 12 chrY 640408 640571 -15261984 + Lx LINE L1 6478 6654 0 3 589 558 232 120 0 chrY 641741 641866 -15260689 + B3 SINE B2 70 209 -7 3 589 397 363 68 0 chrY 642018 642164 -15260391 + RSINE1 SINE B4 3 158 -7 3 589 3205 77 5 7 chrY 642164 642595 -15259960 + L1_Mus2 LINE L1 6137 6566 0 3 589 1564 54 10 0 chrY 643040 643276 -15259279 - L1Md_A LINE L1 0 6582 6368 3 589 22 56 0 0 chrY 643364 643400 -15259155 + AT_rich Low_complexity Low_complexity 1 36 0 3 589 1149 76 0 0 chrY 643891 644036 -15258519 + B1_Mus1 SINE Alu 4 148 0 3 589 510 204 19 0 chrY 644715 644818 -15257737 - U6 snRNA snRNA 0 107 3 3 589 1207 61 0 0 chrY 644920 645067 -15257488 - B1_Mus2 SINE Alu 0 147 1 3 589 329 289 101 22 chrY 645093 645231 -15257324 - RSINE1 SINE B4 -14 151 3 3 589 2152 62 11 0 chrY 645507 645782 -15256773 + L1Md_F3 LINE L1 5309 5586 -297 3 589 8100 42 4 9 chrY 645782 646784 -15255771 + L1Md_F3 LINE L1 5587 6583 -1 3 589 22 56 0 0 chrY 646784 646820 -15255735 + AT_rich Low_complexity Low_complexity 1 36 0 3 589 324 316 20 20 chrY 647358 647458 -15255097 - B3 SINE B2 -13 203 104 3 589 329 161 11 110 chrY 647950 648041 -15254514 + RLTR25A LTR ERVK 501 582 -521 3 589 705 82 21 0 chrY 647977 648074 -15254481 + B1_Mus2 SINE Alu 49 147 0 3 589 1168 55 0 7 chrY 648251 648399 -15254156 - B1_Mus1 SINE Alu 0 148 2 3 589 1817 84 31 68 chrY 648427 648721 -15253834 + L1_Mus1 LINE L1 6285 6567 0 3 589 355 94 0 0 chrY 648771 648824 -15253731 - L1_Mus2 LINE L1 -11 6555 6503 3 589 327 307 114 0 chrY 648832 648920 -15253635 - B3A SINE B2 -100 98 1 3 589 286 0 43 43 chrY 649477 649523 -15253032 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 3 589 2329 53 284 0 chrY 649540 649878 -15252677 + RLTR10C LTR ERVK 1 434 -2 3 589 1051 68 8 0 chrY 649881 650014 -15252541 - B1_Mus2 SINE Alu -12 135 2 3 589 564 285 31 1 chrY 650505 650634 -15251921 - B1_Mur3 SINE Alu -8 141 10 3 589 21 0 0 0 chrY 651774 651795 -15250760 + AT_rich Low_complexity Low_complexity 1 21 0 3 589 313 228 0 0 chrY 651796 651853 -15250702 - B1_Mm SINE Alu -30 117 61 3 589 255 184 0 39 chrY 651902 651953 -15250602 + B1_Mus1 SINE Alu 20 68 -80 3 589 319 250 67 31 chrY 651955 652079 -15250476 + B1_Mur2 SINE Alu 3 146 -3 3 589 242 337 112 0 chrY 652142 652231 -15250324 + B3 SINE B2 103 201 -15 3 589 372 43 0 0 chrY 654021 654067 -15248488 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 589 571 297 107 89 chrY 654978 655323 -15247232 + ORR1D2 LTR MaLR 1 362 -8 3 73 22 56 0 0 chrY 655333 655369 -15247186 + AT_rich Low_complexity Low_complexity 1 36 0 3 590 659 121 9 53 chrY 655697 655810 -15246745 - ORR1C2 LTR MaLR -2 382 275 3 590 525 168 0 0 chrY 655819 655926 -15246629 + (CA)n Simple_repeat Simple_repeat 2 108 0 3 590 2835 216 75 151 chrY 655927 656623 -15245932 + Lx7 LINE L1 4639 5352 -528 3 590 548 263 53 0 chrY 656623 656756 -15245799 + B1_Mus2 SINE Alu 3 142 -5 3 590 2835 216 75 151 chrY 656756 657255 -15245300 + Lx7 LINE L1 5353 5866 -14 3 590 12636 54 18 7 chrY 657264 658906 -15243649 + L1Md_F2 LINE L1 3927 5586 -297 3 590 7988 46 5 3 chrY 658906 659888 -15242667 + L1Md_F2 LINE L1 5587 6570 -12 3 590 365 254 44 15 chrY 659904 660040 -15242515 + Lx7 LINE L1 5881 6020 -1676 3 590 1068 298 201 23 chrY 660050 660715 -15241840 + Lx7 LINE L1 6595 7378 -318 3 590 1196 99 60 0 chrY 661549 661709 -15240846 + B2_Mm1t SINE B2 1 165 -28 3 590 261 83 0 0 chrY 661709 661745 -15240810 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 590 1196 99 60 0 chrY 661745 661766 -15240789 + B2_Mm1t SINE B2 166 192 -1 3 590 795 273 14 5 chrY 661949 662159 -15240396 + B3 SINE B2 1 212 -4 3 590 1622 246 35 19 chrY 662166 662592 -15239963 + L1_Mur3 LINE L1 5436 5868 -12 3 590 5133 128 67 13 chrY 662659 663553 -15239002 + Lx3A LINE L1 6033 6974 -7 3 590 301 268 0 0 chrY 663602 663658 -15238897 - B1_Mur4 SINE Alu -86 64 9 3 590 236 253 76 51 chrY 663727 663806 -15238749 - B1F SINE Alu -16 104 24 3 590 2270 114 3 26 chrY 663863 664222 -15238333 - L1_Mus4 LINE L1 -4 6632 6282 3 590 2906 45 53 3 chrY 664222 664599 -15237956 + MTA_Mm LTR MaLR 1 396 0 3 590 2270 114 3 26 chrY 664599 664618 -15237937 - L1_Mus4 LINE L1 -355 6281 6263 3 590 523 172 123 62 chrY 664732 664862 -15237693 + URR1B DNA MER1_type 33 170 -55 3 590 53 73 0 0 chrY 664916 665025 -15237530 + AT_rich Low_complexity Low_complexity 1 109 0 3 590 391 333 29 14 chrY 665029 665169 -15237386 - B1_Mur1 SINE Alu -6 143 2 3 590 269 293 105 22 chrY 665209 665343 -15237212 + B1F1 SINE Alu 4 144 -5 3 590 1294 102 10 5 chrY 665490 665686 -15236869 - L1_Mus3 LINE L1 -8 6630 6434 3 590 4673 108 47 9 chrY 665687 666451 -15236104 - L1_Mm LINE L1 -1396 4487 3695 3 590 595 146 0 15 chrY 666881 667013 -15235542 + (TA)n Simple_repeat Simple_repeat 1 130 0 3 590 273 128 0 0 chrY 667136 667183 -15235372 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 590 1230 236 161 16 chrY 667450 667816 -15234739 + MTD LTR MaLR 1 419 0 3 590 300 376 59 22 chrY 668215 668351 -15234204 + ID_B1 SINE B4 80 220 -4 3 590 21 57 0 0 chrY 669045 669080 -15233475 + AT_rich Low_complexity Low_complexity 1 35 0 3 590 438 340 98 15 chrY 669163 669366 -15233189 + B4A SINE B4 70 289 -3 3 590 2232 80 9 25 chrY 670387 670706 -15231849 - L1_Mus3 LINE L1 -6 6632 6319 3 590 334 283 124 27 chrY 671100 671120 -15231435 + CYRA11_Mm Unknown Y-chromosome 150 187 -430 3 590 901 227 81 0 chrY 671120 671318 -15231237 - URR1B DNA MER1_type 0 225 12 3 590 23 0 0 0 chrY 671481 671504 -15231051 + AT_rich Low_complexity Low_complexity 1 23 0 3 590 232 333 183 9 chrY 671540 671655 -15230900 + B4 SINE B4 86 220 -72 3 590 22 0 0 0 chrY 672556 672578 -15229977 + AT_rich Low_complexity Low_complexity 1 22 0 3 590 456 157 0 73 chrY 673330 673426 -15229129 + B1_Mus2 SINE Alu 59 147 0 3 590 2791 137 25 6 chrY 673699 674178 -15228377 - Lx2 LINE L1 -1 6996 6509 3 590 2404 137 26 7 chrY 674186 674604 -15227951 + MusHAL1 LINE L1 1063 1488 -1224 3 590 1722 309 75 33 chrY 674761 675494 -15227061 + Lx8 LINE L1 6304 7067 -406 3 590 2493 148 11 40 chrY 675634 676107 -15226448 + Lx LINE L1 6179 6637 -17 3 590 405 0 0 0 chrY 676107 676152 -15226403 + (CAA)n Simple_repeat Simple_repeat 3 47 0 3 590 226 372 78 46 chrY 676152 676369 -15226186 + B4 SINE B4 2 225 -67 3 590 355 362 105 52 chrY 677439 677649 -15224906 + MTEb LTR MaLR 1 221 -158 3 590 7525 70 4 5 chrY 678413 679645 -15222910 - L1_Mus2 LINE L1 0 6566 5358 3 590 322 302 104 35 chrY 680473 680617 -15221938 + L1_Rod LINE L1 39 192 -6980 3 590 1636 190 54 50 chrY 680922 681366 -15221189 + L1_Rod LINE L1 2097 2542 -3305 3 590 245 155 302 0 chrY 681419 681535 -15221020 + L1_Rod LINE L1 2493 2643 -3204 3 590 3163 186 61 31 chrY 681847 682991 -15219564 + L1_Mur1 LINE L1 866 2052 -3834 3 590 3939 156 21 45 chrY 682994 683986 -15218569 + L1_Mur1 LINE L1 3981 4874 -1009 3 590 570 67 0 0 chrY 684000 684075 -15218480 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 3 590 5180 168 26 4 chrY 684364 685303 -15217252 + L1_Mur1 LINE L1 4862 5820 -63 3 590 1813 33 0 9 chrY 685324 685539 -15217016 + L1Md_F2 LINE L1 6182 6394 -188 3 590 345 48 16 16 chrY 685538 685602 -15216953 + L1Md_F2 LINE L1 6519 6582 0 3 590 6059 128 74 10 chrY 685614 686639 -15215916 + Lx2 LINE L1 5827 6917 -80 3 590 330 61 0 0 chrY 686627 686685 -15215870 + Lx2 LINE L1 6946 6997 0 3 590 739 259 69 8 chrY 686699 686944 -15215611 + RMER1C Other Other 1065 1324 -18 3 590 22 0 0 0 chrY 687536 687558 -15214997 + AT_rich Low_complexity Low_complexity 1 22 0 3 590 763 166 7 27 chrY 687597 687746 -15214809 + B1_Mus2 SINE Alu 1 146 -1 3 590 183 80 0 0 chrY 687756 687781 -15214774 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 3 590 1113 75 7 0 chrY 687814 687960 -15214595 - B1_Mus2 SINE Alu 0 147 1 3 590 948 87 72 0 chrY 688871 689009 -15213546 - B1_Mus1 SINE Alu 0 148 1 3 590 330 431 72 8 chrY 689247 689509 -15213046 + B4A SINE B4 2 280 -12 3 590 230 315 33 0 chrY 689512 689604 -15212951 + (TATG)n Simple_repeat Simple_repeat 1 95 0 3 590 230 312 13 0 chrY 689559 689636 -15212919 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 3 590 3700 44 2 2 chrY 689722 690178 -15212377 - L1Md_F3 LINE L1 -1 6583 6128 3 590 499 333 18 73 chrY 691220 691385 -15211170 - RSINE1 SINE B4 -7 158 3 3 590 21 57 0 0 chrY 691825 691860 -15210695 + AT_rich Low_complexity Low_complexity 1 35 0 3 590 1290 91 43 0 chrY 692121 692308 -15210247 + B2_Mm2 SINE B2 1 195 0 3 590 1064 73 13 0 chrY 692909 693059 -15209496 + (CATA)n Simple_repeat Simple_repeat 3 154 0 3 590 27 29 0 0 chrY 693126 693160 -15209395 + AT_rich Low_complexity Low_complexity 1 34 0 3 590 431 299 67 57 chrY 693389 693598 -15208957 - B3 SINE B2 -5 211 1 3 590 871 221 68 14 chrY 693806 694099 -15208456 + L1_Rod LINE L1 1902 2210 -3637 3 590 4407 92 35 3 chrY 694109 694732 -15207823 - L1Md_F2 LINE L1 -5 6577 5935 3 590 17754 66 4 0 chrY 694732 697045 -15205510 - L1_Mm LINE L1 -150 5733 3412 3 590 430 304 71 46 chrY 697579 698239 -15204316 + L1_Mur3 LINE L1 850 1547 -4333 3 590 8157 42 5 0 chrY 698235 699316 -15203239 - L1Md_F2 LINE L1 0 6582 5497 3 590 282 218 81 0 chrY 699321 699408 -15203147 + L1_Mur3 LINE L1 1539 1632 -4248 3 590 967 212 47 23 chrY 699882 700219 -15202336 + L1_Mur2 LINE L1 797 1219 -5867 4 590 2561 123 0 8 chrY 700221 700597 -15201958 + Lx2 LINE L1 6317 6689 -308 4 590 925 169 98 0 chrY 700601 700785 -15201770 + L1_Mur2 LINE L1 2312 2513 -3364 4 590 373 222 88 56 chrY 701468 701683 -15200872 - Lx7 LINE L1 -156 7540 7319 4 590 557 256 70 45 chrY 701653 701853 -15200702 - Lx7 LINE L1 -282 7414 7210 4 590 3797 125 56 14 chrY 702020 702663 -15199892 + Lx2 LINE L1 6327 6996 -1 4 590 561 262 262 36 chrY 702837 703142 -15199413 + ORR1D1 LTR MaLR 1 374 0 4 590 1114 42 0 0 chrY 703762 703905 -15198650 + L1Md_T LINE L1 6438 6580 -2 4 590 28 0 0 0 chrY 704221 704249 -15198306 + AT_rich Low_complexity Low_complexity 1 28 0 4 590 651 321 96 56 chrY 705102 705438 -15197117 + L1M5 LINE L1 3448 3812 -2334 4 590 348 98 0 0 chrY 705438 705499 -15197056 + L1_Mus3 LINE L1 6572 6632 -6 4 590 651 321 96 56 chrY 705499 705694 -15196861 + L1M5 LINE L1 3813 4000 -2146 4 590 520 146 0 35 chrY 705709 705823 -15196732 + GA-rich Low_complexity Low_complexity 3 112 0 4 590 220 219 0 0 chrY 705970 706011 -15196544 - B3A SINE B2 -152 46 6 4 590 182 171 0 24 chrY 706112 706154 -15196401 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 4 590 1126 121 6 0 chrY 706188 706354 -15196201 - B2_Mm2 SINE B2 -28 167 1 4 590 7128 173 57 12 chrY 706404 708380 -15194175 + Lx2B LINE L1 4916 6998 -2 4 590 784 277 40 37 chrY 708394 708690 -15193865 + L1_Mur3 LINE L1 56 352 -7376 4 590 811 184 50 6 chrY 708706 708886 -15193669 + L1_Mur3 LINE L1 4344 4531 -1349 4 590 290 95 0 0 chrY 708886 708928 -15193627 - MT2_Mm LTR ERVL 0 493 452 4 590 3223 56 15 0 chrY 708928 709338 -15193217 + L1Md_F2 LINE L1 5170 5585 -298 4 590 7752 52 4 5 chrY 709339 710317 -15192238 + L1Md_F2 LINE L1 5587 6563 -19 4 590 3544 58 56 0 chrY 710358 710808 -15191747 - MT2C_Mm LTR ERVL 0 475 1 4 590 314 0 0 0 chrY 710808 710846 -15191709 - MERVL-int LTR ERVL 0 5485 5448 4 590 346 285 86 21 chrY 710846 710986 -15191569 - ORR1A3-int LTR MaLR -1323 640 492 4 590 41504 61 18 7 chrY 711043 716341 -15186214 - MERVL-int LTR ERVL -129 5356 1 4 590 2991 56 159 12 chrY 716341 716755 -15185800 - MT2C_Mm LTR ERVL 0 475 1 4 590 998 159 11 6 chrY 716755 716938 -15185617 + L1_Mur3 LINE L1 4527 4710 -1170 4 590 1036 184 80 17 chrY 716948 717185 -15185370 + Lx7 LINE L1 7445 7696 0 4 590 2520 38 69 0 chrY 717969 718288 -15184267 - L1Md_T LINE L1 -2 6580 6240 4 590 3847 172 35 4 chrY 718367 719060 -15183495 + Lx2B LINE L1 6283 6996 -4 4 590 458 276 32 16 chrY 719067 719192 -15183363 + B1_Mus1 SINE Alu 22 148 0 4 590 306 271 131 11 chrY 719460 719588 -15182967 + B1F SINE Alu 9 147 -2 4 590 30 27 0 0 chrY 719650 719687 -15182868 + AT_rich Low_complexity Low_complexity 1 37 0 4 590 401 337 118 41 chrY 721321 721516 -15181039 + B4A SINE B4 1 210 -82 4 590 3560 135 141 99 chrY 721969 722522 -15180033 + Lx2 LINE L1 6123 6739 -258 4 590 367 70 18 0 chrY 722522 722579 -15179976 + B1_Mur4 SINE Alu 93 150 0 4 590 3560 135 141 99 chrY 722579 722809 -15179746 + Lx2 LINE L1 6740 6997 0 4 590 927 0 0 0 chrY 722812 722915 -15179640 + (TCCA)n Simple_repeat Simple_repeat 1 103 0 4 590 395 289 97 24 chrY 722917 723041 -15179514 - B1_Mur4 SINE Alu -17 133 1 4 590 21 36 0 0 chrY 723217 723245 -15179310 + AT_rich Low_complexity Low_complexity 1 28 0 4 590 674 227 14 14 chrY 723456 723599 -15178956 + B1_Mur1 SINE Alu 5 147 -2 4 590 24 53 0 0 chrY 723704 723742 -15178813 + AT_rich Low_complexity Low_complexity 1 38 0 4 590 322 216 50 50 chrY 724487 724628 -15177927 + L1_Mur3 LINE L1 1134 1274 -6454 4 590 929 202 72 40 chrY 724631 724935 -15177620 + L1_Mur3 LINE L1 2650 2963 -2917 4 590 2130 165 13 26 chrY 724957 725343 -15177212 + MTC LTR MaLR 24 404 -17 4 590 439 178 35 35 chrY 725348 725517 -15177038 + L1_Mur3 LINE L1 2982 3150 -2730 4 590 393 146 0 58 chrY 725527 725617 -15176938 + B2_Mm2 SINE B2 2 85 -131 4 590 2846 120 139 18 chrY 725617 726271 -15176284 + Lx3C LINE L1 6237 6969 -7 4 590 503 193 68 7 chrY 726308 726454 -15176101 + L1_Mur3 LINE L1 3171 3325 -2555 4 590 576 208 35 7 chrY 726448 726593 -15175962 + L1_Mur3 LINE L1 5122 5270 -610 4 590 231 221 354 0 chrY 726656 726783 -15175772 + MER2 DNA MER2_type 35 206 -139 4 590 801 297 10 5 chrY 726776 726979 -15175576 + B3 SINE B2 9 212 -4 4 590 1154 62 0 0 chrY 726982 727120 -15175435 + B1_Mm SINE Alu 1 138 -9 4 590 216 0 0 0 chrY 727120 727144 -15175411 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 590 1220 88 28 33 chrY 727422 727633 -15174922 + Lx LINE L1 6445 6654 0 4 590 26 0 0 0 chrY 728003 728029 -15174526 + AT_rich Low_complexity Low_complexity 1 26 0 4 590 2950 44 6 0 chrY 728125 728489 -15174066 + L1Md_F3 LINE L1 6216 6581 -3 4 590 289 377 9 28 chrY 728618 728727 -15173828 - ID_B1 SINE B4 -88 136 30 4 590 27 49 0 0 chrY 728984 729025 -15173530 + AT_rich Low_complexity Low_complexity 1 41 0 4 590 509 291 7 41 chrY 729389 729536 -15173019 + B1_Mur1 SINE Alu 8 149 0 4 590 778 181 20 34 chrY 729644 729793 -15172762 + B1_Mur4 SINE Alu 2 148 -2 4 590 257 275 74 12 chrY 730089 730170 -15172385 + PB1D9 SINE Alu 1 86 -34 4 590 510 146 0 0 chrY 730174 730284 -15172271 + (CA)n Simple_repeat Simple_repeat 2 111 0 4 590 382 377 0 8 chrY 731652 731775 -15170780 - RSINE1 SINE B4 -42 123 2 4 590 254 229 56 14 chrY 732640 732711 -15169844 + RMER15 LTR ERVL 61 134 -441 4 590 460 256 16 23 chrY 732714 732842 -15169713 + RMER15 LTR ERVL 382 508 -67 4 590 1790 201 89 50 chrY 733210 733672 -15168883 + RLTR28 LTR ERVL 32 511 -13 4 590 322 329 110 52 chrY 733828 734001 -15168554 - B4 SINE B4 -107 185 3 4 590 455 252 96 7 chrY 734032 734168 -15168387 + B1_Mur4 SINE Alu 3 150 0 4 590 13677 124 65 8 chrY 734196 737383 -15165172 + L1VL2 LINE L1 583 4353 -1530 4 590 2316 136 10 8 chrY 737359 737758 -15164797 + L1VL2 LINE L1 4969 5368 -515 4 590 6521 102 53 9 chrY 737756 738936 -15163619 + L1_Mus2 LINE L1 183 1426 -4457 4 590 16569 142 75 34 chrY 738936 743045 -15159510 + L1_Mus2 LINE L1 2275 6562 -4 4 590 240 35 0 0 chrY 743076 743105 -15159450 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 4 590 691 120 0 0 chrY 743624 743724 -15158831 - B1_Mus2 SINE Alu -1 146 47 4 590 227 269 0 43 chrY 743681 743751 -15158804 - 4.5SRNA scRNA scRNA -8 86 20 4 590 4093 175 6 53 chrY 743751 744115 -15158440 + L1_Mur2 LINE L1 4555 4916 -961 4 590 996 116 14 0 chrY 744115 744261 -15158294 - B1_Mus1 SINE Alu 0 148 1 4 590 4093 175 6 53 chrY 744261 744654 -15157901 + L1_Mur2 LINE L1 4917 5296 -581 4 590 1509 55 0 10 chrY 744654 744856 -15157699 + L1Md_F2 LINE L1 6381 6580 -2 4 590 4093 175 6 53 chrY 744856 744871 -15157684 + L1_Mur2 LINE L1 5297 5297 -580 4 590 207 0 0 0 chrY 744871 744894 -15157661 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 590 4093 175 6 53 chrY 744894 745025 -15157530 + L1_Mur2 LINE L1 5297 5417 -460 4 590 4045 191 63 30 chrY 745038 746006 -15156549 + Lx3C LINE L1 5893 6983 -75 4 590 24 0 0 0 chrY 746021 746045 -15156510 + AT_rich Low_complexity Low_complexity 1 24 0 4 590 819 0 0 0 chrY 746061 746152 -15156403 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 590 314 357 67 60 chrY 746549 746683 -15155872 + RSINE1 SINE B4 29 163 -2 4 590 300 281 102 75 chrY 746701 746967 -15155588 + L1MEg LINE L1 1202 1474 -4610 4 590 241 246 27 14 chrY 747432 747506 -15155049 + L1_Mur3 LINE L1 3161 3235 -2642 4 590 21 0 0 0 chrY 747859 747880 -15154675 + AT_rich Low_complexity Low_complexity 1 21 0 4 590 1352 209 59 9 chrY 749207 749531 -15153024 + L1_Mur3 LINE L1 3742 4081 -1799 4 590 1138 172 24 114 chrY 749517 749679 -15152876 + L1_Mur3 LINE L1 4295 4437 -1443 4 590 4782 64 8 5 chrY 749679 750306 -15152249 + L1_Mus2 LINE L1 5937 6565 -1 4 590 1138 172 24 114 chrY 750306 750484 -15152071 + L1_Mur3 LINE L1 4438 4604 -1276 4 590 2606 171 95 16 chrY 750484 751107 -15151448 + L1_Mur3 LINE L1 4886 5557 -323 4 590 24940 95 23 52 chrY 751116 755173 -15147382 + L1Md_F2 LINE L1 1646 5586 -297 4 590 7848 62 0 3 chrY 755173 756168 -15146387 + L1Md_F2 LINE L1 5587 6578 -4 4 590 1672 242 65 103 chrY 756170 756507 -15146048 + Lx6 LINE L1 6393 6740 -720 4 590 1092 68 14 0 chrY 756507 756653 -15145902 + B1_Mus1 SINE Alu 1 148 0 4 590 1672 242 65 103 chrY 756653 756708 -15145847 + Lx6 LINE L1 6741 6755 -705 4 590 416 62 0 15 chrY 756708 756774 -15145781 + L1_Mus3 LINE L1 6565 6629 -9 4 590 1672 242 65 103 chrY 756774 757062 -15145493 + Lx6 LINE L1 6756 7048 -412 4 590 29543 124 20 16 chrY 757060 761494 -15141061 + L1_Mus1 LINE L1 511 4984 -899 4 590 3365 36 0 0 chrY 761494 761887 -15140668 + MTA_Mm LTR MaLR 4 396 0 4 590 29543 103 16 14 chrY 761887 762974 -15139581 + L1_Mus1 LINE L1 4985 6050 -517 4 590 4077 44 0 0 chrY 762974 763456 -15139099 + LTRIS_Mm LTR ERV1 1 482 0 4 590 6973 88 22 9 chrY 763456 763956 -15138599 + L1_Mus1 LINE L1 6051 6567 0 4 590 986 275 17 4 chrY 763980 764214 -15138341 + Lx6 LINE L1 7034 7270 -190 4 590 238 163 9 101 chrY 764369 764478 -15138077 + T-rich Low_complexity Low_complexity 3 101 0 4 590 21 0 0 0 chrY 764592 764613 -15137942 + AT_rich Low_complexity Low_complexity 1 21 0 4 590 369 0 0 0 chrY 764939 764980 -15137575 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 590 1678 135 77 62 chrY 764997 765321 -15137234 - ORR1A4 LTR MaLR 0 329 1 4 590 368 105 27 54 chrY 765561 765672 -15136883 + T-rich Low_complexity Low_complexity 5 112 0 4 590 896 0 10 0 chrY 765690 765794 -15136761 + (CATCT)n Simple_repeat Simple_repeat 5 109 0 4 590 908 264 155 27 chrY 766183 766518 -15136037 + Lx2B LINE L1 6598 6975 -25 4 590 1728 120 43 3 chrY 766535 766835 -15135720 + L1_Mur2 LINE L1 4268 4579 -1298 4 590 545 192 0 67 chrY 766830 766964 -15135591 + Lx4A LINE L1 5861 5985 -1073 4 590 242 264 0 0 chrY 767116 767179 -15135376 + Lx7 LINE L1 6269 6332 -1141 4 590 652 314 182 22 chrY 767196 767874 -15134681 + Lx7 LINE L1 6398 7182 -514 4 590 23 54 0 0 chrY 768560 768597 -15133958 + AT_rich Low_complexity Low_complexity 1 37 0 4 590 2374 192 40 42 chrY 769172 769733 -15132822 + RLTR31_Mm LTR ERVK 1 561 0 4 590 483 115 309 8 chrY 769741 769864 -15132691 + Lx2 LINE L1 6838 6997 0 4 590 225 284 0 29 chrY 770388 770457 -15132098 + (TATG)n Simple_repeat Simple_repeat 4 70 0 4 590 239 255 39 0 chrY 771140 771191 -15131364 + ID SINE ID 23 75 -149 4 590 234 233 30 104 chrY 771191 771207 -15131348 + ID4_ SINE ID 22 83 0 4 590 30 45 0 0 chrY 771935 771979 -15130576 + AT_rich Low_complexity Low_complexity 1 44 0 4 590 21 57 0 0 chrY 772090 772125 -15130430 + AT_rich Low_complexity Low_complexity 1 35 0 4 590 5800 164 82 19 chrY 772125 773320 -15129235 + Lx4B LINE L1 5747 7054 -4 4 590 5330 169 123 11 chrY 773348 774887 -15127668 + Lx2B LINE L1 5237 6999 -1 4 590 369 235 12 24 chrY 775038 775121 -15127434 + B4A SINE B4 165 246 -46 4 590 1179 115 11 21 chrY 775133 775294 -15127261 + B2_Mm2 SINE B2 2 164 -31 5 590 801 58 0 0 chrY 775294 775397 -15127158 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 5 590 1179 115 11 21 chrY 775397 775421 -15127134 + B2_Mm2 SINE B2 165 185 -10 5 590 1064 91 0 0 chrY 775549 775692 -15126863 + B1_Mus1 SINE Alu 6 148 0 5 590 24 77 0 0 chrY 776457 776509 -15126046 + AT_rich Low_complexity Low_complexity 1 52 0 5 590 629 201 158 23 chrY 776966 777170 -15125385 + Lx4B LINE L1 6762 7058 0 5 590 258 274 12 0 chrY 777428 777512 -15125043 + L1M3 LINE L1 3797 3881 -2259 5 590 21 71 0 0 chrY 777901 777943 -15124612 + AT_rich Low_complexity Low_complexity 1 42 0 5 590 1006 123 0 134 chrY 778134 778350 -15124205 - L1_Mus1 LINE L1 0 6567 6381 5 590 680 86 123 9 chrY 778345 778451 -15124104 - L1_Mus1 LINE L1 -394 6173 6056 5 590 751 186 13 27 chrY 778589 778738 -15123817 - B1_Mus1 SINE Alu 0 148 2 5 590 788 153 71 21 chrY 779320 779460 -15123095 - B1_Mus1 SINE Alu -1 147 1 5 590 227 173 0 19 chrY 779700 779753 -15122802 + (CATA)n Simple_repeat Simple_repeat 4 55 0 5 590 1621 234 122 26 chrY 780372 780841 -15121714 + RMER19C LTR ERVK 93 606 -5 5 590 24 53 0 0 chrY 780886 780924 -15121631 + AT_rich Low_complexity Low_complexity 1 38 0 5 590 216 212 12 36 chrY 781059 781095 -15121460 + A-rich Low_complexity Low_complexity 1 36 0 5 590 1975 131 59 6 chrY 781095 781432 -15121123 + Lx2 LINE L1 6624 6978 -19 5 590 216 212 12 36 chrY 781432 781478 -15121077 + A-rich Low_complexity Low_complexity 37 81 0 5 590 465 294 73 53 chrY 781812 782015 -15120540 + B3A SINE B2 3 216 0 5 590 618 117 56 46 chrY 782111 782219 -15120336 + B1_Mus2 SINE Alu 22 130 -17 5 590 486 46 0 0 chrY 782804 782869 -15119686 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 590 1147 125 14 34 chrY 782880 783087 -15119468 - Lx3B LINE L1 -4 6969 6767 5 590 21 0 0 0 chrY 783161 783182 -15119373 + AT_rich Low_complexity Low_complexity 1 21 0 5 590 32 0 0 0 chrY 784053 784085 -15118470 + AT_rich Low_complexity Low_complexity 1 32 0 5 590 557 319 39 0 chrY 784347 784554 -15118001 + B3 SINE B2 2 216 0 5 590 24 53 0 0 chrY 785680 785718 -15116837 + AT_rich Low_complexity Low_complexity 1 38 0 5 590 236 191 14 29 chrY 785745 785815 -15116740 + (TAA)n Simple_repeat Simple_repeat 3 71 0 5 591 274 343 9 62 chrY 786578 786690 -15115865 + PB1D10 SINE Alu 12 117 0 5 591 266 266 106 35 chrY 786898 787011 -15115544 + L1MCa LINE L1 32 152 -6356 5 591 302 305 125 7 chrY 787449 787601 -15114954 + L1M4 LINE L1 2757 2926 -3220 5 591 24 0 0 0 chrY 787670 787694 -15114861 + AT_rich Low_complexity Low_complexity 1 24 0 5 591 368 279 183 47 chrY 787709 787826 -15114729 + L1M4 LINE L1 3086 3218 -2928 5 591 1222 120 5 5 chrY 787826 788010 -15114545 + B2_Mm2 SINE B2 2 185 -10 5 591 368 279 183 47 chrY 788010 788231 -15114324 + L1M4 LINE L1 3219 3470 -2676 5 591 245 178 0 0 chrY 788383 788428 -15114127 + L1MCa LINE L1 429 473 -6035 5 591 27 29 0 0 chrY 788879 788913 -15113642 + AT_rich Low_complexity Low_complexity 1 34 0 5 591 5861 128 62 21 chrY 789159 790206 -15112349 + Lx2A1 LINE L1 5915 7004 -4 5 591 947 93 58 0 chrY 791834 791973 -15110582 + B1_Mus1 SINE Alu 2 148 0 5 591 264 167 0 0 chrY 791981 792029 -15110526 + A-rich Low_complexity Low_complexity 1 48 0 5 591 1321 187 166 76 chrY 792536 792958 -15109597 - RMER6B LTR ERVK 0 461 2 5 591 333 279 80 69 chrY 792975 793237 -15109318 + L1M4c LINE L1 2189 2453 -3931 5 591 876 113 84 26 chrY 793237 793392 -15109163 + B2_Mm2 SINE B2 1 164 -31 5 591 720 192 79 0 chrY 793597 793774 -15108781 - Lx5 LINE L1 0 7050 6860 5 591 1261 112 11 0 chrY 793838 794025 -15108530 - B2_Mm2 SINE B2 -6 189 1 5 591 21 0 0 0 chrY 794063 794084 -15108471 + AT_rich Low_complexity Low_complexity 1 21 0 5 591 759 152 86 63 chrY 794089 794264 -15108291 - Lx4A LINE L1 -9 7049 6871 5 591 650 258 103 69 chrY 794286 794633 -15107922 - Lx6 LINE L1 -158 7302 6647 5 591 184 247 12 12 chrY 797094 797180 -15105375 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 591 29 70 0 0 chrY 797265 797322 -15105233 + AT_rich Low_complexity Low_complexity 1 57 0 5 591 182 232 36 0 chrY 797336 797448 -15105107 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 591 2816 144 114 18 chrY 797448 797992 -15104563 + RLTR25A LTR ERVK 446 1041 -62 5 591 421 71 14 14 chrY 798016 798087 -15104468 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 591 503 292 53 5 chrY 798136 798361 -15104194 - MT2B LTR ERVL -48 553 349 5 591 4346 22 0 0 chrY 798412 798905 -15103650 - MT2_Mm LTR ERVL 0 493 1 5 591 576 0 0 0 chrY 799036 799100 -15103455 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 5 591 1431 84 11 0 chrY 799888 800079 -15102476 - B2_Mm2 SINE B2 -2 193 1 5 591 613 292 61 15 chrY 800854 801111 -15101444 + MurERV4-int LTR ERVK 1053 1361 -1816 5 591 1097 306 10 36 chrY 801237 801654 -15100901 + MurERV4-int LTR ERVK 1605 2010 -3250 5 591 612 221 0 41 chrY 801724 801870 -15100685 + MurERV4-int LTR ERVK 2121 2260 -917 5 591 1623 143 21 89 chrY 802036 802374 -15100181 - ORR1A4 LTR MaLR -8 321 7 5 591 874 238 44 18 chrY 802376 802603 -15099952 + MurERV4-int LTR ERVK 2658 2890 -2370 5 591 5782 49 8 3 chrY 802661 803381 -15099174 - L1Md_F2 LINE L1 0 6582 5859 5 591 217 345 0 23 chrY 803714 803800 -15098755 + CT-rich Low_complexity Low_complexity 3 86 0 5 591 8296 36 1 0 chrY 804057 805308 -15097247 - L1Md_T LINE L1 0 6582 5357 5 591 39656 23 2 2 chrY 805302 810787 -15091768 - L1Md_A LINE L1 -1 6581 1105 5 591 198 0 0 0 chrY 810787 810809 -15091746 + (T)n Simple_repeat Simple_repeat 1 22 0 5 591 37994 49 1 3 chrY 810894 817633 -15084922 - L1Md_T LINE L1 0 6585 1 5 591 7513 53 23 1 chrY 817632 818607 -15083948 - L1Md_A LINE L1 -5576 1148 153 5 591 4391 259 35 41 chrY 818608 820184 -15082371 + MurERV4-int LTR ERVK 2907 4473 -787 5 591 1277 214 149 20 chrY 820189 820532 -15082023 - RLTR25A LTR ERVK -3 1100 714 5 591 5883 113 91 2 chrY 820532 821765 -15080790 - L1_Mus3 LINE L1 -29 6609 5269 5 591 1112 109 0 6 chrY 821765 821941 -15080614 + (TCC)n Simple_repeat Simple_repeat 1 175 0 5 591 6994 120 11 15 chrY 822000 823367 -15079188 - L1Md_F2 LINE L1 -1 6566 5207 5 591 781 98 0 0 chrY 823367 823479 -15079076 + B1_Mus1 SINE Alu 18 129 -19 5 591 225 0 0 0 chrY 823484 823509 -15079046 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 591 8206 139 26 63 chrY 823509 823794 -15078761 - L1Md_F2 LINE L1 0 6582 6119 5 591 283 337 41 21 chrY 823794 823891 -15078664 + B1F1 SINE Alu 4 102 -47 5 591 8206 139 26 63 chrY 823891 825704 -15076851 - L1Md_F2 LINE L1 0 6118 3158 5 591 12721 68 1 28 chrY 825703 827464 -15075091 - L1Md_F LINE L1 -361 5522 3811 5 591 486 61 0 0 chrY 829440 829506 -15073049 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 591 528 61 0 47 chrY 829600 829686 -15072869 - L1Md_F2 LINE L1 -11 6571 6490 5 591 18195 82 9 7 chrY 829686 832330 -15070225 - L1Md_F LINE L1 -2059 3824 1175 5 591 7984 55 11 0 chrY 832331 833832 -15068723 - L1Md_F2 LINE L1 -1 6581 5064 5 591 3150 129 17 12 chrY 833822 834616 -15067939 - L1Md_F LINE L1 -5501 1223 457 5 591 4235 148 29 27 chrY 834616 835520 -15067035 - L1Md_F LINE L1 -5493 1026 143 5 591 1395 133 9 0 chrY 835520 835730 -15066825 + L1_Mus2 LINE L1 6354 6565 -1 5 591 1357 179 0 1 chrY 835746 836001 -15066554 - Lx6 LINE L1 -1779 5681 5433 5 591 1102 179 9 0 chrY 836002 836226 -15066329 - Lx6 LINE L1 -621 5265 5040 5 591 28 0 0 0 chrY 836373 836401 -15066154 + AT_rich Low_complexity Low_complexity 1 28 0 5 591 350 350 54 22 chrY 836435 836619 -15065936 + B3A SINE B2 3 192 -6 5 591 225 283 116 85 chrY 836762 836951 -15065604 + Cheshire DNA MER1_type 731 925 -1495 5 591 35306 24 1 8 chrY 836957 842148 -15060407 + L1Md_A LINE L1 440 5586 -297 5 591 8308 38 2 0 chrY 842148 843142 -15059413 + L1Md_A LINE L1 5587 6582 0 5 591 428 315 141 0 chrY 843275 843459 -15059096 + B3 SINE B2 2 211 -5 5 591 587 321 31 35 chrY 844079 844366 -15058189 + Lx5 LINE L1 6060 6345 -705 5 591 236 244 217 12 chrY 845314 845397 -15057158 + PB1D10 SINE Alu 18 117 0 5 591 284 278 28 0 chrY 845579 845651 -15056904 - B1_Mur1 SINE Alu -40 109 36 5 591 409 356 68 0 chrY 847181 847313 -15055242 - RSINE1 SINE B4 -17 148 8 5 591 204 125 0 0 chrY 847351 847383 -15055172 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 591 946 208 100 2 chrY 847436 847663 -15054892 - ORR1A1 LTR MaLR 0 394 141 5 591 813 30 0 0 chrY 847728 847828 -15054727 + (TCC)n Simple_repeat Simple_repeat 3 102 0 5 591 184 244 0 0 chrY 853176 853217 -15049338 - MER5B DNA MER1_type -126 52 12 5 591 185 340 106 0 chrY 853246 853340 -15049215 + MER5A DNA MER1_type 13 116 -73 5 591 309 118 0 0 chrY 853435 853486 -15049069 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 591 801 0 0 0 chrY 853486 853574 -15048981 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 591 503 277 40 66 chrY 853782 854010 -15048545 - RMER12 LTR ERVK 0 1322 1101 5 591 1389 61 0 0 chrY 854014 854194 -15048361 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 591 726 136 0 0 chrY 854195 854313 -15048242 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 5 591 4230 118 5 40 chrY 854313 855023 -15047532 - L1_Mus1 LINE L1 -88 6920 5843 5 591 5122 14 0 5 chrY 855039 855663 -15046892 - L1Md_T LINE L1 -216 5667 5047 5 591 7891 34 12 0 chrY 855663 856602 -15045953 + L1Md_T LINE L1 5632 6581 -1 5 591 1083 191 24 16 chrY 856613 856653 -15045902 + L1_Mur2 LINE L1 3464 3504 -2373 5 591 1675 21 0 0 chrY 856653 856842 -15045713 - B2_Mm1t SINE B2 -3 190 2 5 591 1083 191 24 16 chrY 856842 857051 -15045504 + L1_Mur2 LINE L1 3505 3715 -2162 5 591 1937 90 109 0 chrY 857049 857147 -15045408 - Lx2 LINE L1 -1016 5981 5876 5 591 372 22 0 0 chrY 857147 857192 -15045363 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 591 1937 90 109 0 chrY 857192 857414 -15045141 - Lx2 LINE L1 -1122 5875 5628 5 591 3164 172 9 21 chrY 857407 858060 -15044495 + L1_Mur2 LINE L1 3883 4527 -1350 5 591 3573 85 14 0 chrY 858068 858574 -15043981 - L1Md_F2 LINE L1 -460 6122 5610 5 591 3453 97 4 2 chrY 858575 859062 -15043493 + L1Md_F2 LINE L1 6095 6582 0 5 591 784 206 35 0 chrY 859062 859261 -15043294 + L1_Mur2 LINE L1 4531 4736 -1141 5 591 3428 209 26 33 chrY 859261 859982 -15042573 - RMER13B LTR ERVK -192 716 1 6 591 1886 238 144 45 chrY 860324 860941 -15041614 + RMER19A LTR ERVK 1 678 -59 6 591 186 133 0 0 chrY 860958 860988 -15041567 + (T)n Simple_repeat Simple_repeat 1 30 0 6 591 1078 115 0 0 chrY 860988 861136 -15041419 - B1_Mus1 SINE Alu 0 148 1 6 591 8277 142 36 50 chrY 861336 862909 -15039646 - RLTR22_Mur LTR ERVK -2 1846 296 6 591 34641 44 1 1 chrY 862912 868182 -15034373 - L1Md_T LINE L1 0 6585 1313 6 591 2335 114 2 10 chrY 868181 868596 -15033959 - L1Md_T LINE L1 -6102 420 9 6 591 1553 248 15 18 chrY 868596 868932 -15033623 - RMER13A LTR ERVK -523 337 3 6 591 272 137 20 0 chrY 869573 869624 -15032931 + GA-rich Low_complexity Low_complexity 4 55 0 6 591 357 262 83 9 chrY 869624 869732 -15032823 - MTD LTR MaLR -299 120 5 6 591 248 191 0 21 chrY 869806 869854 -15032701 + RMER10A LTR ERVL 2 48 -394 6 591 534 84 126 0 chrY 869854 869949 -15032606 + HAL1-2a_MD LINE L1 2421 2527 -497 6 591 260 346 115 19 chrY 870125 870281 -15032274 + Lx8 LINE L1 6255 6425 -1048 6 591 301 360 58 6 chrY 870281 870454 -15032101 + MTE-int LTR MaLR 1341 1522 -58 6 591 6386 108 31 12 chrY 870559 872253 -15030302 - L1_Mus3 LINE L1 -8 6630 4917 6 591 216 0 0 0 chrY 872838 872862 -15029693 + (T)n Simple_repeat Simple_repeat 1 24 0 6 591 324 217 20 61 chrY 872980 873078 -15029477 - L1M5 LINE L1 -693 5431 5338 6 591 327 314 97 13 chrY 873376 873531 -15029024 + L1M2 LINE L1 4957 5124 -1019 6 591 272 91 0 22 chrY 873594 873639 -15028916 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 591 358 352 8 23 chrY 873653 873784 -15028771 - B3 SINE B2 -86 130 2 6 591 34 0 0 0 chrY 874014 874048 -15028507 + AT_rich Low_complexity Low_complexity 1 34 0 6 591 1620 280 44 44 chrY 874136 874767 -15027788 - Lx3B LINE L1 -1 6999 6369 6 591 32566 77 5 3 chrY 874784 881022 -15021533 - L1Md_F2 LINE L1 0 6585 241 6 591 3211 218 84 138 chrY 881016 881999 -15020556 - Lx3B LINE L1 -585 6388 5376 6 591 1940 94 31 3 chrY 881999 882286 -15020269 - L1_Mus1 LINE L1 0 6567 6273 6 591 3211 200 53 226 chrY 882286 883422 -15019133 - Lx3B LINE L1 -511 5375 4484 6 591 3629 50 13 2 chrY 883417 883893 -15018662 - L1Md_F2 LINE L1 -243 6339 5859 6 591 217 345 0 23 chrY 884226 884312 -15018243 + CT-rich Low_complexity Low_complexity 3 86 0 6 591 7941 34 1 0 chrY 884569 885820 -15016735 - L1Md_T LINE L1 0 6582 5357 6 591 31144 23 1 2 chrY 885814 891300 -15011255 - L1Md_A LINE L1 0 6582 1105 6 591 198 0 0 0 chrY 891300 891322 -15011233 + (T)n Simple_repeat Simple_repeat 1 22 0 6 591 36319 49 1 3 chrY 891406 898145 -15004410 - L1Md_T LINE L1 0 6585 1 6 591 7133 53 23 1 chrY 898144 899119 -15003436 - L1Md_A LINE L1 -5576 1148 153 6 591 3965 264 31 37 chrY 899120 900691 -15001864 + MurERV4-int LTR ERVK 2907 4468 -792 6 591 1276 214 149 20 chrY 900701 901044 -15001511 - RLTR25A LTR ERVK -3 1100 714 6 591 5544 114 90 2 chrY 901044 902279 -15000276 - L1_Mus3 LINE L1 -29 6609 5267 6 591 1144 91 0 11 chrY 902286 902464 -15000091 + (TCC)n Simple_repeat Simple_repeat 3 178 0 6 591 6642 108 6 3 chrY 902553 903919 -14998636 - L1_Mus1 LINE L1 -1 6566 5202 6 591 794 98 0 0 chrY 903922 904034 -14998521 + B1_Mus1 SINE Alu 18 129 -19 6 591 225 0 0 0 chrY 904039 904064 -14998491 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 591 1078 169 0 5 chrY 904095 904291 -14998264 - L1_Mus1 LINE L1 -675 5208 5014 6 591 288 337 41 21 chrY 904350 904447 -14998108 + B1F1 SINE Alu 4 102 -47 6 591 7830 46 2 0 chrY 904450 905534 -14997021 - L1Md_F2 LINE L1 0 6582 5497 6 591 259 235 82 0 chrY 905539 905624 -14996931 + L1_Mur1 LINE L1 1536 1627 -4259 6 591 4150 87 0 0 chrY 905661 906260 -14996295 - L1_Mm LINE L1 -2127 3756 3158 6 591 12121 68 1 28 chrY 906259 908020 -14994535 - L1Md_F LINE L1 -361 5522 3811 6 591 414 69 0 0 chrY 909996 910054 -14992501 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 591 528 61 0 47 chrY 910148 910234 -14992321 - L1Md_F2 LINE L1 -11 6571 6490 6 591 17292 82 9 7 chrY 910234 912879 -14989676 - L1Md_F LINE L1 -2059 3824 1175 6 591 7613 55 11 0 chrY 912880 914381 -14988174 - L1Md_F2 LINE L1 -1 6581 5064 6 591 3150 129 17 12 chrY 914371 915165 -14987390 - L1Md_F LINE L1 -5501 1223 457 6 591 4235 148 29 27 chrY 915165 916069 -14986486 - L1Md_F LINE L1 -5493 1026 143 6 591 1395 133 9 0 chrY 916069 916279 -14986276 + L1_Mus2 LINE L1 6354 6565 -1 6 591 1357 179 0 1 chrY 916295 916550 -14986005 - Lx6 LINE L1 -1779 5681 5433 6 591 1102 179 9 0 chrY 916551 916775 -14985780 - Lx6 LINE L1 -621 5265 5040 6 591 28 0 0 0 chrY 916922 916950 -14985605 + AT_rich Low_complexity Low_complexity 1 28 0 6 591 350 350 54 22 chrY 916984 917168 -14985387 + B3A SINE B2 3 192 -6 6 592 35306 24 1 8 chrY 917507 922698 -14979857 + L1Md_A LINE L1 440 5586 -297 6 592 8308 38 2 0 chrY 922698 923692 -14978863 + L1Md_A LINE L1 5587 6582 0 6 592 428 315 141 0 chrY 923825 924009 -14978546 + B3 SINE B2 2 211 -5 6 592 587 321 31 35 chrY 924629 924916 -14977639 + Lx5 LINE L1 6060 6345 -705 6 592 236 244 217 12 chrY 925864 925947 -14976608 + PB1D10 SINE Alu 18 117 0 6 592 284 278 28 0 chrY 926129 926201 -14976354 - B1_Mur1 SINE Alu -40 109 36 6 592 409 356 68 0 chrY 927731 927863 -14974692 - RSINE1 SINE B4 -17 148 8 6 592 204 125 0 0 chrY 927901 927933 -14974622 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 592 946 208 100 2 chrY 927986 928213 -14974342 - ORR1A1 LTR MaLR 0 394 141 6 592 813 30 0 0 chrY 928278 928378 -14974177 + (TCC)n Simple_repeat Simple_repeat 3 102 0 6 592 184 244 0 0 chrY 933726 933767 -14968788 - MER5B DNA MER1_type -126 52 12 6 592 185 340 106 0 chrY 933796 933890 -14968665 + MER5A DNA MER1_type 13 116 -73 6 592 291 122 0 0 chrY 933985 934034 -14968521 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 592 459 0 0 0 chrY 934034 934084 -14968471 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 592 503 277 40 66 chrY 934292 934520 -14968035 - RMER12 LTR ERVK 0 1322 1101 6 592 1389 61 0 0 chrY 934524 934704 -14967851 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 592 612 146 0 0 chrY 934704 934807 -14967748 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 6 592 4230 118 5 40 chrY 934807 935517 -14967038 - L1_Mus1 LINE L1 -88 6920 5843 6 592 5144 13 0 5 chrY 935533 936157 -14966398 - L1Md_T LINE L1 -216 5667 5047 6 592 7891 34 12 0 chrY 936157 937096 -14965459 + L1Md_T LINE L1 5632 6581 -1 6 592 1083 191 24 16 chrY 937107 937147 -14965408 + L1_Mur2 LINE L1 3464 3504 -2373 6 592 1675 21 0 0 chrY 937147 937336 -14965219 - B2_Mm1t SINE B2 -3 190 2 6 592 1083 191 24 16 chrY 937336 937545 -14965010 + L1_Mur2 LINE L1 3505 3715 -2162 6 592 1937 90 109 0 chrY 937543 937641 -14964914 - Lx2 LINE L1 -1016 5981 5876 6 592 426 20 0 0 chrY 937641 937692 -14964863 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 592 1937 90 109 0 chrY 937692 937914 -14964641 - Lx2 LINE L1 -1122 5875 5628 6 592 3164 172 9 21 chrY 937907 938560 -14963995 + L1_Mur2 LINE L1 3883 4527 -1350 6 592 3573 85 14 0 chrY 938568 939074 -14963481 - L1Md_F2 LINE L1 -460 6122 5610 6 592 3453 97 4 2 chrY 939075 939562 -14962993 + L1Md_F2 LINE L1 6095 6582 0 6 592 784 206 35 0 chrY 939562 939761 -14962794 + L1_Mur2 LINE L1 4531 4736 -1141 6 592 3428 209 26 33 chrY 939761 940482 -14962073 - RMER13B LTR ERVK -192 716 1 6 592 1815 237 157 46 chrY 940824 941434 -14961121 + RMER19A LTR ERVK 1 678 -59 6 592 186 133 0 0 chrY 941451 941481 -14961074 + (T)n Simple_repeat Simple_repeat 1 30 0 6 592 1078 115 0 0 chrY 941481 941629 -14960926 - B1_Mus1 SINE Alu 0 148 1 6 592 8277 142 36 50 chrY 941829 943402 -14959153 - RLTR22_Mur LTR ERVK -2 1846 296 6 592 36296 44 1 1 chrY 943405 948675 -14953880 - L1Md_T LINE L1 0 6585 1313 6 592 2484 114 2 10 chrY 948674 949089 -14953466 - L1Md_T LINE L1 -6102 420 9 6 592 1540 248 15 18 chrY 949089 949425 -14953130 - RMER13A LTR ERVK -523 337 3 6 592 272 137 20 0 chrY 950065 950116 -14952439 + GA-rich Low_complexity Low_complexity 4 55 0 6 592 356 262 83 9 chrY 950116 950224 -14952331 - MTD LTR MaLR -299 120 5 6 592 246 191 0 21 chrY 950298 950346 -14952209 + RMER10A LTR ERVL 2 48 -394 6 592 615 88 124 0 chrY 950346 950459 -14952096 + HAL1-2a_MD LINE L1 2401 2527 -497 6 592 307 346 115 19 chrY 950635 950791 -14951764 + Lx8 LINE L1 6255 6425 -1048 6 592 327 355 58 6 chrY 950791 950964 -14951591 + MTE-int LTR MaLR 1341 1522 -58 6 592 6750 107 31 12 chrY 951069 952763 -14949792 - L1_Mus3 LINE L1 -8 6630 4917 6 592 189 0 0 0 chrY 953348 953369 -14949186 + (T)n Simple_repeat Simple_repeat 1 21 0 6 592 324 217 20 61 chrY 953487 953585 -14948970 - L1M5 LINE L1 -693 5431 5338 6 592 249 281 116 22 chrY 953883 954021 -14948534 + L1M2 LINE L1 4957 5107 -1036 6 592 290 87 0 21 chrY 954099 954146 -14948409 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 592 355 352 8 23 chrY 954160 954291 -14948264 - B3 SINE B2 -86 130 2 6 592 34 0 0 0 chrY 954521 954555 -14948000 + AT_rich Low_complexity Low_complexity 1 34 0 6 592 1815 279 44 44 chrY 954643 955274 -14947281 - Lx3B LINE L1 -1 6999 6369 6 592 34181 77 5 3 chrY 955289 961527 -14941028 - L1Md_F2 LINE L1 0 6585 241 6 592 15643 213 84 65 chrY 961521 962504 -14940051 - Lx3B LINE L1 -585 6388 5376 6 592 1932 94 31 3 chrY 962504 962791 -14939764 - L1_Mus1 LINE L1 0 6567 6273 6 592 15643 191 52 98 chrY 962791 965456 -14937099 - Lx3B LINE L1 -511 5375 2895 6 592 597 28 0 0 chrY 965456 965527 -14937028 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 6 592 15643 191 52 98 chrY 965527 966845 -14935710 - Lx3B LINE L1 -2992 2894 1547 6 592 876 245 63 22 chrY 966839 967331 -14935224 - Lx3B LINE L1 -2523 1391 836 6 592 328 82 0 39 chrY 967334 967385 -14935170 + IAPEY_LTR LTR ERVK 335 383 -2 6 592 3300 75 0 2 chrY 967385 967815 -14934740 + L1_Mus1 LINE L1 6131 6559 -8 6 592 194 0 39 0 chrY 967818 967844 -14934711 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 6 592 2085 164 39 7 chrY 967844 968279 -14934276 - L1_Mur1 LINE L1 -3250 2636 2188 7 592 336 309 134 41 chrY 968766 969131 -14933424 + L1M2 LINE L1 2585 2983 -3160 7 592 1029 112 0 0 chrY 969235 969378 -14933177 + B1_Mus1 SINE Alu 1 143 -5 7 592 610 206 7 111 chrY 970698 970851 -14931704 + B1_Mur3 SINE Alu 3 139 -10 7 592 1197 84 0 0 chrY 970990 971314 -14931241 + (CA)n Simple_repeat Simple_repeat 1 324 0 7 592 214 146 0 40 chrY 971966 972016 -14930539 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 592 219 397 82 8 chrY 972058 972180 -14930375 + B1F2 SINE Alu 12 142 -7 7 592 286 359 26 66 chrY 972396 972623 -14929932 + MTD LTR MaLR 62 279 -140 7 592 34954 46 7 3 chrY 973838 979017 -14923538 + L1Md_A LINE L1 298 5589 -297 7 592 8197 43 1 0 chrY 979018 980011 -14922544 + L1Md_A LINE L1 5591 6584 -1 7 592 3883 30 0 2 chrY 980042 980508 -14922047 + L1Md_T LINE L1 5122 5586 -297 7 592 8063 48 2 0 chrY 980509 981498 -14921057 + L1Md_T LINE L1 5588 6578 -4 7 592 374 81 65 0 chrY 981760 981822 -14920733 - MYSERV6-int LTR ERVK -4080 4879 4814 7 592 2150 161 47 3 chrY 981804 982190 -14920365 - MYSERV6-int LTR ERVK -6795 2164 1762 7 592 478 133 10 48 chrY 982746 982849 -14919706 - L1Md_F2 LINE L1 -1 6581 6483 7 592 3380 53 2 0 chrY 982849 983263 -14919292 + L1_Mus1 LINE L1 6104 6518 -49 7 592 570 298 201 20 chrY 983285 983836 -14918719 + Cheshire DNA MER1_type 1112 1762 -658 7 592 219 289 122 9 chrY 983841 983956 -14918599 - B3 SINE B2 -3 213 86 7 592 240 325 25 0 chrY 984647 984727 -14917828 + MER5A DNA MER1_type 1 82 -107 7 592 489 151 0 38 chrY 984800 984931 -14917624 + GA-rich Low_complexity Low_complexity 1 126 0 7 592 671 212 8 0 chrY 985485 985603 -14916952 - ETnERV2-int LTR ERVK -218 7188 7070 7 592 18370 185 43 42 chrY 986338 988530 -14914025 + L1_Mus3 LINE L1 1449 3754 -2132 7 592 2711 61 3 6 chrY 988530 988876 -14913679 + IAPLTR4 LTR ERVK 1 345 0 7 592 18370 185 43 42 chrY 988876 990966 -14911589 + L1_Mus3 LINE L1 3755 5740 -146 7 592 3151 35 5 48 chrY 990966 991380 -14911175 + MTA_Mm LTR MaLR 1 396 0 7 592 18370 110 9 8 chrY 991380 992114 -14910441 + L1_Mus3 LINE L1 5738 6471 -167 7 592 27 0 0 0 chrY 992558 992585 -14909970 + AT_rich Low_complexity Low_complexity 1 27 0 7 592 25995 91 6 5 chrY 993479 997175 -14905380 + L1Md_F2 LINE L1 1888 5586 -297 7 592 6620 85 18 29 chrY 997176 998170 -14904385 + L1Md_F2 LINE L1 5588 6570 -12 7 592 181 159 21 83 chrY 998170 998218 -14904337 + L4 LINE RTE 327 371 -1658 7 592 21 36 0 0 chrY 998378 998406 -14904149 + AT_rich Low_complexity Low_complexity 1 28 0 7 592 28 105 0 0 chrY 998443 998548 -14904007 + AT_rich Low_complexity Low_complexity 1 105 0 7 592 8183 48 5 0 chrY 998548 999901 -14902654 - L1Md_F3 LINE L1 -17 6567 5208 7 592 910 35 0 0 chrY 999884 1000000 -14902555 - L1Md_F3 LINE L1 -5470 1146 1031 7 592 2975 173 15 7 chrY 1000000 1000610 -14901945 - L1Md_A LINE L1 -5670 1054 440 1 592 6789 171 65 3 chrY 1001391 1002351 -14900204 + Lx3C LINE L1 4925 5937 -1039 2 592 486 0 0 0 chrY 1002351 1002405 -14900150 + (CAAA)n Simple_repeat Simple_repeat 1 54 0 3 592 6789 174 60 1 chrY 1002405 1003372 -14899183 + Lx3C LINE L1 5938 6973 -3 2 592 2372 251 140 41 chrY 1003530 1004420 -14898135 + RMER17B LTR ERVK 1 899 -9 4 592 328 301 111 91 chrY 1006602 1006854 -14895701 + RMER20B LTR ERVK 93 349 -278 5 592 244 295 177 16 chrY 1007255 1007441 -14895114 + B3 SINE B2 1 216 0 6 592 282 339 57 8 chrY 1007829 1007951 -14894604 - B1F1 SINE Alu -13 136 9 7 592 29361 107 15 8 chrY 1007967 1014059 -14888496 - L1_Mus1 LINE L1 -2 6565 437 8 592 322 300 12 12 chrY 1015403 1015484 -14887071 + B1_Mur3 SINE Alu 3 83 -66 9 592 459 0 0 0 chrY 1016059 1016110 -14886445 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 592 3777 146 40 15 chrY 1017208 1017380 -14885175 - L1_Mm LINE L1 -601 5282 5108 1 592 953 141 0 0 chrY 1017380 1017522 -14885033 - B1_Mm SINE Alu -5 142 1 1 592 3777 146 40 15 chrY 1017522 1018067 -14884488 - L1_Mm LINE L1 -776 5107 4547 1 592 211 186 47 47 chrY 1018067 1018174 -14884381 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 1 592 245 135 0 19 chrY 1018176 1018229 -14884326 + (CATCT)n Simple_repeat Simple_repeat 2 53 0 1 592 1456 115 16 22 chrY 1018230 1018591 -14883964 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 1 592 309 185 0 34 chrY 1018602 1018781 -14883774 + CT-rich Low_complexity Low_complexity 2 174 0 1 592 324 210 0 0 chrY 1018780 1018861 -14883694 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1 592 1102 82 34 34 chrY 1018854 1019180 -14883375 + (TCTA)n Simple_repeat Simple_repeat 1 325 0 1 592 258 281 12 0 chrY 1019188 1019270 -14883285 + MuRRS4-int LTR ERV1 2897 2979 -4799 1 592 4088 42 2 0 chrY 1019270 1019751 -14882804 - LTRIS_Mm LTR ERV1 0 482 1 2 592 4180 137 26 85 chrY 1019949 1020809 -14881746 + RMER17D2 LTR ERVK 1 809 0 2 592 453 367 54 41 chrY 1020918 1021699 -14880856 + MuRRS4-int LTR ERV1 3177 3982 -3624 1 592 182 303 92 0 chrY 1021793 1021869 -14880686 + L4 LINE RTE 833 915 -1114 2 592 690 309 31 10 chrY 1021916 1022378 -14880177 + MuRRS4-int LTR ERV1 3737 3958 -1105 1 592 333 323 41 29 chrY 1023111 1023353 -14879202 + MURVY-int LTR ERV1 7055 7299 -153 2 592 1180 55 0 0 chrY 1025534 1025680 -14876875 - B1_Mus2 SINE Alu 0 147 2 2 592 1226 137 18 5 chrY 1025701 1025921 -14876634 - L1_Mus4 LINE L1 -5 6631 6409 2 592 951 142 0 20 chrY 1025921 1026072 -14876483 + B1_Mus1 SINE Alu 1 148 0 2 592 26997 107 32 23 chrY 1027305 1031902 -14870653 + L1Md_F3 LINE L1 204 4919 -964 2 592 235 173 45 148 chrY 1031902 1031990 -14870565 - RMER20A LTR ERVK -268 248 170 2 592 26997 107 32 23 chrY 1031990 1032638 -14869917 + L1Md_F3 LINE L1 4920 5585 -298 2 592 7032 84 12 4 chrY 1032639 1033614 -14868941 + L1Md_F3 LINE L1 5587 6569 -15 2 592 22451 75 11 6 chrY 1034098 1038066 -14864489 - L1Md_F3 LINE L1 -17 6567 2575 2 592 4416 163 26 23 chrY 1038066 1040444 -14862111 - ETnERV2-int LTR ERVK -541 6865 2488 3 592 4266 30 0 0 chrY 1040994 1041487 -14861068 - MT2_Mm LTR ERVL 0 493 1 3 592 1191 112 0 0 chrY 1041508 1041687 -14860868 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 3 592 493 100 140 0 chrY 1041687 1041837 -14860718 - L1Md_F2 LINE L1 0 6582 6469 3 592 4319 95 2 8 chrY 1041837 1042474 -14860081 - L1_Mus2 LINE L1 -332 6234 5602 3 592 1992 120 261 27 chrY 1042474 1042918 -14859637 - RLTR6_Mm LTR ERV1 -70 584 37 3 592 259 228 200 38 chrY 1042920 1043025 -14859530 - RLTR6_Mm LTR ERV1 -532 122 1 3 592 4879 109 1 1 chrY 1043025 1043768 -14858787 - L1_Mm LINE L1 -278 5605 4863 3 592 463 259 82 65 chrY 1043828 1044121 -14858434 + L1M2 LINE L1 5509 5806 -485 3 592 432 0 0 0 chrY 1044206 1044254 -14858301 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 592 242 254 97 0 chrY 1044263 1044428 -14858127 - L1_Mur3 LINE L1 -6475 1237 1057 4 592 312 137 0 0 chrY 1044710 1044761 -14857794 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 4 592 607 88 110 0 chrY 1044777 1044868 -14857687 + B1_Mus2 SINE Alu 41 141 -6 4 592 4672 155 42 26 chrY 1045198 1046207 -14856348 - L1_Mm LINE L1 -3192 2691 1667 4 9 25308 104 7 2 chrY 1046208 1049582 -14852973 - L1Md_F2 LINE L1 -12 6570 3181 4 593 356 0 23 0 chrY 1049582 1049626 -14852929 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 593 25308 106 9 1 chrY 1049626 1050889 -14851666 - L1Md_F2 LINE L1 -2703 3180 1906 4 593 362 64 0 0 chrY 1050893 1050940 -14851615 - ORR1A1 LTR MaLR -8 318 272 4 593 35524 48 8 4 chrY 1050940 1057341 -14845214 - L1Md_T LINE L1 -3 6582 59 4 593 2266 68 0 22 chrY 1057342 1057656 -14844899 - ORR1A1 LTR MaLR -39 307 1 4 593 5615 135 35 5 chrY 1057656 1059510 -14843045 - L1Md_F2 LINE L1 -3975 1908 98 4 593 3102 263 31 3 chrY 1059506 1060502 -14842053 - L1_Mur2 LINE L1 -36 5841 4818 4 593 4964 166 73 27 chrY 1060512 1062252 -14840303 + L1_Mur1 LINE L1 10 2128 -3758 4 593 2641 109 39 5 chrY 1062456 1062863 -14839692 - L1_Mus3 LINE L1 -7 6631 6211 5 593 225 0 0 0 chrY 1064223 1064248 -14838307 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 593 28 71 0 0 chrY 1064363 1064419 -14838136 + AT_rich Low_complexity Low_complexity 1 56 0 5 593 622 318 45 10 chrY 1064862 1065154 -14837401 - Lx3C LINE L1 -2 6974 6673 5 593 2156 221 76 40 chrY 1065256 1065938 -14836617 - L1_Mur2 LINE L1 -118 5759 5053 5 593 282 207 17 0 chrY 1069778 1069836 -14832719 - ORR1A4 LTR MaLR -270 59 1 5 593 417 366 8 0 chrY 1070384 1070507 -14832048 + B3A SINE B2 36 159 -39 5 593 3834 139 16 5 chrY 1070880 1071517 -14831038 + ETnERV2-int LTR ERVK 3442 4085 -3321 5 593 267 197 82 0 chrY 1071494 1071555 -14831000 + ETnERV2-int LTR ERVK 4585 4650 -2594 5 593 432 299 47 8 chrY 1071560 1071688 -14830867 + ETnERV2-int LTR ERVK 7070 7202 -204 5 593 301 271 50 25 chrY 1072244 1072365 -14830190 + RMER16-int LTR ERVK 181 304 -6940 5 593 1231 201 51 28 chrY 1072562 1072846 -14829709 + RMER16-int LTR ERVK 192 525 -4881 5 593 198 0 0 0 chrY 1072846 1072868 -14829687 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 6 593 671 259 108 37 chrY 1072868 1073070 -14829485 + RMER16-int LTR ERVK 396 653 -5484 5 593 467 200 118 0 chrY 1073088 1073198 -14829357 + RMER16-int LTR ERVK 938 1060 -5077 5 593 660 188 0 30 chrY 1073315 1073447 -14829108 + MMETn-int LTR ERVK 2635 2762 -4644 6 593 4218 185 68 100 chrY 1073468 1074969 -14827586 + RLTR45-int LTR ERVK 4296 5748 -1496 6 593 1387 92 0 10 chrY 1075036 1075233 -14827322 - RLTR27 LTR ERVK -114 195 1 6 593 1312 181 4 23 chrY 1075233 1075499 -14827056 - MMERVK10C-int LTR ERVK 0 7581 7321 6 593 288 325 18 24 chrY 1075620 1075784 -14826771 - MMERVK10C-int LTR ERVK -512 7069 6907 6 593 6146 308 29 37 chrY 1075977 1079776 -14822779 - MMERVK10C-int LTR ERVK -2116 5465 1697 6 593 2982 48 0 0 chrY 1079776 1080130 -14822425 - IAPEY2_LTR LTR ERVK -3 354 1 6 593 6146 308 29 37 chrY 1080130 1080315 -14822240 - MMERVK10C-int LTR ERVK -5885 1696 1515 6 593 251 283 120 19 chrY 1080843 1080951 -14821604 - MMERVK10C-int LTR ERVK -6765 915 797 6 593 600 240 47 37 chrY 1081052 1081242 -14821313 - MMERVK10C-int LTR ERVK -1135 852 661 6 593 338 82 37 56 chrY 1081278 1081332 -14821223 - MMERVK10C-int LTR ERVK -7314 267 162 6 593 1957 139 19 16 chrY 1081356 1081664 -14820891 - RLTR27 LTR ERVK 0 309 1 6 593 1504 105 48 153 chrY 1081664 1082036 -14820519 + RLTR45-int LTR ERVK 5739 6071 -1173 6 593 793 262 4 0 chrY 1082038 1082315 -14820240 + RLTR45-int LTR ERVK 7506 7748 -469 6 593 3719 188 25 6 chrY 1082425 1083120 -14819435 + ETnERV2-int LTR ERVK 6495 7202 -204 6 593 3484 202 43 51 chrY 1083493 1084795 -14817760 + MMETn-int LTR ERVK 2004 3185 -1659 6 593 448 84 14 0 chrY 1085010 1085081 -14817474 + MMETn-int LTR ERVK 7331 7402 -4 6 593 1423 153 104 107 chrY 1085086 1085480 -14817075 + RLTR9C LTR ERVK 1 393 0 6 593 239 319 26 65 chrY 1087080 1087157 -14815398 - RMER13A LTR ERVK -214 694 621 6 593 750 308 67 59 chrY 1087220 1087607 -14814948 - RMER13A LTR ERVK -395 465 76 6 593 21 0 0 0 chrY 1089096 1089117 -14813438 + AT_rich Low_complexity Low_complexity 1 21 0 6 593 1276 261 76 18 chrY 1089645 1090140 -14812415 + RLTR20B1 LTR ERVK 21 527 -7 6 593 853 50 8 8 chrY 1090172 1090292 -14812263 + (GA)n Simple_repeat Simple_repeat 1 120 0 7 593 6597 89 7 18 chrY 1090418 1090999 -14811556 - L1_Mus1 LINE L1 -1 6566 5998 7 593 3090 17 0 0 chrY 1090999 1091345 -14811210 + ORR1A0 LTR MaLR 1 346 0 7 593 9585 109 5 7 chrY 1091345 1092977 -14809578 - L1_Mus1 LINE L1 -570 5997 4364 7 593 774 175 1 0 chrY 1092975 1093149 -14809406 + L1_Mus1 LINE L1 4190 4364 -1513 7 593 21 0 0 0 chrY 1093395 1093416 -14809139 + AT_rich Low_complexity Low_complexity 1 21 0 7 593 3670 202 84 25 chrY 1093743 1095705 -14806850 + MYSERV16_I-int LTR ERVK 1 2212 -114 7 593 1224 312 62 95 chrY 1095807 1096373 -14806182 + RLTR20B1 LTR ERVK 9 555 -8 7 593 252 77 0 0 chrY 1097167 1097206 -14805349 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 593 207 211 19 0 chrY 1097508 1097560 -14804995 + (CTATT)n Simple_repeat Simple_repeat 5 57 0 7 593 1851 116 0 39 chrY 1097977 1098282 -14804273 - L1Md_F2 LINE L1 -12 6570 6278 7 593 13944 36 2 0 chrY 1100403 1102858 -14799697 - L1Md_A LINE L1 -1 6581 4122 7 593 37200 65 1 23 chrY 1102871 1109956 -14792599 - L1Md_T LINE L1 0 6582 99 8 593 19954 63 9 24 chrY 1109956 1113717 -14788838 - L1Md_F LINE L1 -1743 4143 337 8 593 203 122 0 20 chrY 1113824 1113874 -14788681 + (TTTTTG)n Simple_repeat Simple_repeat 3 51 0 8 593 3733 129 7 29 chrY 1114681 1115413 -14787142 + ETnERV2-int LTR ERVK 5751 6227 -1179 8 593 354 133 0 49 chrY 1115512 1115593 -14786962 + RLTR45-int LTR ERVK 6016 6072 -1172 8 593 1622 112 12 12 chrY 1115593 1115845 -14786710 + ETnERV3-int LTR ERVK 5529 5780 -28 8 593 2000 178 78 2 chrY 1115854 1116264 -14786291 + RLTR13D6 LTR ERVK 1 441 -461 8 593 550 102 36 35 chrY 1116264 1116402 -14786153 + ETnERV2-int LTR ERVK 7330 7406 0 8 593 2241 131 88 8 chrY 1116402 1116779 -14785776 + RLTR9E LTR ERVK 1 407 -2 8 593 213 39 0 0 chrY 1117167 1117193 -14785362 + (A)n Simple_repeat Simple_repeat 1 26 0 8 593 2207 75 31 0 chrY 1117221 1117514 -14785041 - ORR1A1 LTR MaLR -8 338 37 8 593 12990 76 6 3 chrY 1117515 1119300 -14783255 - ORR1A1-int LTR MaLR -2 1790 1 8 593 2207 93 0 0 chrY 1119310 1119612 -14782943 - ORR1A1 LTR MaLR -44 302 1 8 593 41119 5 0 0 chrY 1120585 1126744 -14775811 - L1Md_A LINE L1 0 6582 423 8 593 219 341 0 0 chrY 1127559 1127650 -14774905 + CT-rich Low_complexity Low_complexity 2 92 0 8 593 2999 124 25 8 chrY 1127831 1128310 -14774245 + L1_Mus2 LINE L1 6079 6565 -1 9 593 237 375 50 0 chrY 1129598 1129718 -14772837 + B1_Mur2 SINE Alu 9 134 -15 9 593 462 224 216 6 chrY 1129944 1130106 -14772449 - L1_Mur3 LINE L1 0 5880 5685 9 593 865 323 47 5 chrY 1130172 1130616 -14771939 + Lx5 LINE L1 6455 7223 -237 9 593 233 0 0 59 chrY 1131682 1131716 -14770839 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 593 478 203 80 56 chrY 1132264 1132389 -14770166 + ORR1A3-int LTR MaLR 240 367 -1425 9 593 1149 261 32 155 chrY 1132368 1133044 -14769511 - ORR1A1-int LTR MaLR -851 941 349 9 593 189 280 25 74 chrY 1133769 1133850 -14768705 - L2c LINE L2 -235 3152 3076 9 593 351 0 0 0 chrY 1135403 1135442 -14767113 + (T)n Simple_repeat Simple_repeat 1 39 0 9 593 799 107 98 26 chrY 1136848 1137001 -14765554 + L1Md_F2 LINE L1 6418 6581 -1 9 593 22 0 0 0 chrY 1137391 1137413 -14765142 + AT_rich Low_complexity Low_complexity 1 22 0 1 593 960 181 5 30 chrY 1137415 1137788 -14764767 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 1 593 408 228 23 28 chrY 1137850 1138097 -14764458 + (TAGA)n Simple_repeat Simple_repeat 1 245 0 1 593 225 288 17 17 chrY 1138103 1138163 -14764392 - Tigger10 DNA Tigger 0 1843 1784 1 593 219 125 0 0 chrY 1138199 1138239 -14764316 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1 593 345 309 12 29 chrY 1138248 1138421 -14764134 + (CAGAGA)n Simple_repeat Simple_repeat 3 172 0 1 593 303 270 5 48 chrY 1138382 1138514 -14764041 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 593 591 127 0 0 chrY 1138514 1138632 -14763923 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 1 593 303 270 5 48 chrY 1138632 1138686 -14763869 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 593 216 205 25 13 chrY 1138702 1138860 -14763695 + (TA)n Simple_repeat Simple_repeat 1 160 0 1 593 336 135 0 0 chrY 1138960 1139034 -14763521 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 593 210 242 40 32 chrY 1139035 1139159 -14763396 + (CATATA)n Simple_repeat Simple_repeat 6 130 0 1 593 720 131 22 11 chrY 1139159 1139337 -14763218 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 593 291 284 29 17 chrY 1139375 1139547 -14763008 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 1 593 212 232 26 35 chrY 1139525 1139641 -14762914 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 593 507 121 0 0 chrY 1139662 1139761 -14762794 + (CATA)n Simple_repeat Simple_repeat 2 100 0 1 593 2817 28 0 3 chrY 1139763 1140090 -14762465 + IAPLTR3 LTR ERVK 1 326 0 1 593 59048 24 9 2 chrY 1140090 1146845 -14755710 + IAPLTR3-int LTR ERVK 1 6801 -20 1 593 2874 15 0 3 chrY 1146845 1147172 -14755383 + IAPLTR3 LTR ERVK 1 326 0 1 593 437 208 41 23 chrY 1147173 1147345 -14755210 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 593 196 230 0 15 chrY 1147411 1147548 -14755007 + (TA)n Simple_repeat Simple_repeat 1 135 0 1 593 217 198 81 24 chrY 1147563 1147687 -14754868 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 1 593 224 200 0 12 chrY 1147691 1147772 -14754783 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 593 231 322 25 17 chrY 1147777 1147897 -14754658 + (CAGAGA)n Simple_repeat Simple_repeat 4 124 0 1 593 353 148 0 12 chrY 1147919 1148001 -14754554 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 593 193 141 62 0 chrY 1148010 1148074 -14754481 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 1 593 370 246 29 23 chrY 1148078 1148249 -14754306 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 1 593 299 202 0 9 chrY 1148263 1148368 -14754187 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1 593 197 131 11 67 chrY 1148502 1148592 -14753963 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 593 411 231 23 17 chrY 1148673 1148914 -14753641 + (TA)n Simple_repeat Simple_repeat 1 242 0 1 593 240 100 0 0 chrY 1148928 1148968 -14753587 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1 593 281 277 37 30 chrY 1148980 1149198 -14753357 + (CAGAGA)n Simple_repeat Simple_repeat 1 219 0 1 593 659 101 41 23 chrY 1149201 1149373 -14753182 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 593 54745 70 13 6 chrY 1149411 1156519 -14746036 - IAPEY3-int LTR ERVK -524 7156 1 1 593 2681 67 3 0 chrY 1156519 1156850 -14745705 - IAPEY3_LTR LTR ERVK 0 332 1 1 593 389 244 17 17 chrY 1156876 1157105 -14745450 + (TA)n Simple_repeat Simple_repeat 1 229 0 1 593 180 216 0 0 chrY 1157118 1157169 -14745386 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1 593 269 214 13 13 chrY 1157226 1157382 -14745173 + (TA)n Simple_repeat Simple_repeat 2 157 0 1 593 558 168 0 38 chrY 1157400 1157586 -14744969 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 593 234 206 0 0 chrY 1157607 1157670 -14744885 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 1 593 266 255 12 8 chrY 1157725 1157978 -14744577 + (TA)n Simple_repeat Simple_repeat 1 254 0 1 593 389 187 0 7 chrY 1157986 1158121 -14744434 + (CATATA)n Simple_repeat Simple_repeat 3 136 0 1 593 245 29 0 29 chrY 1158245 1158280 -14744275 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 593 369 188 13 32 chrY 1158340 1158494 -14744061 + (CATATA)n Simple_repeat Simple_repeat 4 154 0 1 593 296 133 0 16 chrY 1158618 1158679 -14743876 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 593 280 103 59 40 chrY 1158658 1158759 -14743796 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 1 593 344 236 48 18 chrY 1158792 1158960 -14743595 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 1 593 211 144 60 30 chrY 1158963 1159063 -14743492 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 1 593 295 246 8 17 chrY 1159068 1159188 -14743367 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 593 188 219 0 20 chrY 1159188 1159286 -14743269 + (CATATA)n Simple_repeat Simple_repeat 1 96 0 1 593 254 301 6 28 chrY 1159298 1159479 -14743076 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 1 593 500 174 28 0 chrY 1159512 1159621 -14742934 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 1 593 240 59 0 0 chrY 1159700 1159734 -14742821 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 1 593 389 272 33 44 chrY 1159748 1159857 -14742698 + (CAGAGA)n Simple_repeat Simple_repeat 2 111 0 1 593 4207 36 0 0 chrY 1159857 1160350 -14742205 - MT2_Mm LTR ERVL 0 493 1 1 593 389 272 33 44 chrY 1160350 1160421 -14742134 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 1 593 260 93 91 20 chrY 1160443 1160542 -14742013 + (TAGA)n Simple_repeat Simple_repeat 1 106 0 1 593 365 320 0 0 chrY 1160555 1160733 -14741822 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 1 593 354 214 0 0 chrY 1160770 1160859 -14741696 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 1 593 237 276 17 0 chrY 1160892 1161008 -14741547 + (TA)n Simple_repeat Simple_repeat 2 119 0 1 593 210 68 104 39 chrY 1161012 1161089 -14741466 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1 593 381 230 8 15 chrY 1161103 1161370 -14741185 + (TA)n Simple_repeat Simple_repeat 1 264 0 1 593 211 265 0 0 chrY 1161420 1161469 -14741086 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 1 593 389 282 17 0 chrY 1161483 1161657 -14740898 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 593 259 266 35 23 chrY 1161645 1161818 -14740737 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 593 243 324 18 0 chrY 1161762 1161983 -14740572 + (CAGAGA)n Simple_repeat Simple_repeat 1 225 0 1 593 293 280 13 0 chrY 1161999 1162149 -14740406 + (TA)n Simple_repeat Simple_repeat 2 153 0 1 593 180 0 0 0 chrY 1162156 1162176 -14740379 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 1 593 261 225 0 0 chrY 1162228 1162317 -14740238 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 593 396 215 14 22 chrY 1162357 1162495 -14740060 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 1 593 291 265 17 34 chrY 1162506 1162576 -14739979 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 1 593 1003 63 22 17 chrY 1162576 1162755 -14739800 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 593 291 265 17 34 chrY 1162755 1162860 -14739695 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 1 593 395 160 11 0 chrY 1162869 1162963 -14739592 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 593 282 324 29 23 chrY 1162980 1163081 -14739474 + (CAGAGA)n Simple_repeat Simple_repeat 6 103 0 1 593 967 120 0 12 chrY 1163081 1163250 -14739305 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 1 593 282 324 29 23 chrY 1163250 1163322 -14739233 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 1 593 672 105 21 0 chrY 1163362 1163505 -14739050 + (TA)n Simple_repeat Simple_repeat 2 147 0 1 593 398 20 0 19 chrY 1163525 1163577 -14738978 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 593 449 247 17 22 chrY 1163643 1163739 -14738816 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 593 1024 59 23 29 chrY 1163739 1163914 -14738641 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 1 593 449 247 17 22 chrY 1163914 1163995 -14738560 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 593 258 91 60 15 chrY 1164007 1164074 -14738481 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1 593 287 283 10 0 chrY 1164094 1164228 -14738327 + (TATATG)n Simple_repeat Simple_repeat 1 135 0 1 593 496 201 12 6 chrY 1164233 1164403 -14738152 + (CAGAGA)n Simple_repeat Simple_repeat 2 172 0 1 593 218 295 11 0 chrY 1164403 1164530 -14738025 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 1 593 481 182 14 0 chrY 1164537 1164680 -14737875 + (TA)n Simple_repeat Simple_repeat 1 145 0 1 593 204 100 32 48 chrY 1164669 1164732 -14737823 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 593 667 110 45 0 chrY 1164819 1164973 -14737582 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 1 593 200 35 35 0 chrY 1165005 1165034 -14737521 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 593 195 170 0 0 chrY 1165052 1165099 -14737456 + GA-rich Low_complexity Low_complexity 2 48 0 1 593 378 57 0 0 chrY 1165129 1165182 -14737373 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1 593 715 139 0 11 chrY 1165184 1165366 -14737189 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 593 384 191 0 0 chrY 1165367 1165435 -14737120 + GA-rich Low_complexity Low_complexity 2 69 0 1 593 1139 68 0 0 chrY 1165435 1165582 -14736973 + B1_Mm SINE Alu 1 147 0 1 593 384 191 0 0 chrY 1165582 1165602 -14736953 + polypurine Low_complexity Low_complexity 70 89 0 1 593 425 242 6 27 chrY 1165604 1165787 -14736768 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 593 1620 9 0 0 chrY 1165894 1166107 -14736448 + (TATATG)n Simple_repeat Simple_repeat 1 213 0 1 593 2465 224 27 12 chrY 1167503 1168096 -14734459 + Lx2A1 LINE L1 6213 6814 -194 1 593 183 80 0 0 chrY 1168098 1168123 -14734432 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 593 720 184 8 0 chrY 1168124 1168249 -14734306 - B1_Mus1 SINE Alu -22 126 1 1 593 341 329 50 44 chrY 1168249 1168300 -14734255 - B4 SINE B4 -202 90 39 1 593 1218 199 103 3 chrY 1168313 1168773 -14733782 - Lx3B LINE L1 -1032 5941 5414 1 593 4163 147 36 105 chrY 1168769 1169013 -14733542 + L1_Mur1 LINE L1 4419 4672 -1214 1 593 1156 75 7 0 chrY 1169013 1169159 -14733396 + B1_Mus2 SINE Alu 1 147 0 1 593 4163 147 36 105 chrY 1169159 1169303 -14733252 + L1_Mur1 LINE L1 4673 4734 -1152 1 593 261 0 0 0 chrY 1169303 1169332 -14733223 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 593 276 53 0 0 chrY 1169337 1169375 -14733180 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 593 4163 147 36 105 chrY 1169375 1170037 -14732518 + L1_Mur1 LINE L1 4737 5402 -484 1 593 1690 207 21 12 chrY 1170033 1170463 -14732092 - L1_Mur2 LINE L1 -2212 3665 3232 2 593 874 167 0 0 chrY 1170451 1170625 -14731930 - L1_Mur2 LINE L1 -3463 2414 2241 2 593 457 302 91 31 chrY 1170846 1171213 -14731342 - RMER10A LTR ERVL 0 442 29 2 593 315 0 0 0 chrY 1171273 1171308 -14731247 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 593 452 310 88 12 chrY 1171419 1171579 -14730976 - MTE-int LTR MaLR -351 1229 1058 2 593 240 311 102 18 chrY 1171727 1171894 -14730661 - Cheshire DNA MER1_type -1006 1414 1234 2 593 344 23 0 0 chrY 1171896 1171940 -14730615 + L1Md_F LINE L1 519 562 -5957 2 593 8236 96 5 34 chrY 1171936 1173957 -14728598 + L1Md_F LINE L1 553 2515 -3368 2 593 723 24 0 0 chrY 1173957 1174042 -14728513 + (TTA)n Simple_repeat Simple_repeat 1 85 0 2 593 6258 102 19 7 chrY 1174042 1175238 -14727317 - L1Md_F2 LINE L1 -23 6559 5358 2 593 21200 93 9 27 chrY 1175239 1178589 -14723966 + L1Md_F LINE L1 2520 5810 -73 2 593 471 283 46 23 chrY 1178591 1178721 -14723834 + ETnERV2-int LTR ERVK 7070 7202 -204 2 74 5539 93 3 9 chrY 1179105 1179887 -14722668 + L1Md_F2 LINE L1 5806 6582 0 2 594 24 0 0 0 chrY 1180981 1181005 -14721550 + AT_rich Low_complexity Low_complexity 1 24 0 2 594 6639 154 138 5 chrY 1181448 1183640 -14718915 - L1_Mus3 LINE L1 -9 6629 4104 2 594 2117 108 43 3 chrY 1183651 1183975 -14718580 - ORR1A1 LTR MaLR -9 337 1 2 594 12205 96 6 3 chrY 1183975 1185761 -14716794 - ORR1A1-int LTR MaLR 0 1792 1 2 594 2392 98 27 3 chrY 1185761 1186099 -14716456 - ORR1A1 LTR MaLR 0 346 1 2 594 5952 151 6 13 chrY 1186104 1187246 -14715309 - L1_Mus3 LINE L1 -1786 4097 2964 2 594 213 94 0 0 chrY 1187717 1187749 -14714806 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 594 192 184 19 58 chrY 1187912 1187964 -14714591 - L3 LINE CR1 -2345 2144 2095 2 594 347 321 90 23 chrY 1187972 1188008 -14714547 - Lx5 LINE L1 -196 7264 7229 2 594 1797 123 3 74 chrY 1188008 1188333 -14714222 + L1Md_F2 LINE L1 6281 6582 0 2 594 754 297 68 22 chrY 1188333 1188758 -14713797 - Lx5 LINE L1 -574 6886 6454 2 594 347 228 223 13 chrY 1188864 1189065 -14713490 + Lx6 LINE L1 5697 5935 -1115 2 594 301 336 53 0 chrY 1189251 1189364 -14713191 - B1F2 SINE Alu -25 124 6 2 594 3032 133 19 2 chrY 1190636 1191117 -14711438 - L1_Mus2 LINE L1 -1 6565 6077 2 594 31562 86 10 5 chrY 1191456 1196038 -14706517 - L1Md_F2 LINE L1 -2 6580 1978 2 594 192 40 0 0 chrY 1196038 1196063 -14706492 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 594 31562 95 9 2 chrY 1196063 1196979 -14705576 - L1Md_F2 LINE L1 -3906 1977 1045 2 594 316 161 18 0 chrY 1196983 1197039 -14705516 - L1Md_F2 LINE L1 -6390 226 170 2 594 236 270 26 26 chrY 1199372 1199448 -14703107 + MER5B DNA MER1_type 91 166 -12 2 594 24 0 0 0 chrY 1202083 1202107 -14700448 + AT_rich Low_complexity Low_complexity 1 24 0 2 594 2376 217 26 55 chrY 1202239 1202823 -14699732 + RMER2 LTR ERV1 1 567 0 2 594 342 322 0 43 chrY 1203021 1203206 -14699349 + L1MA9 LINE L1 5953 6129 -183 2 594 491 221 48 0 chrY 1203206 1203310 -14699245 + PB1D10 SINE Alu 1 109 -8 2 594 217 109 0 42 chrY 1203874 1203922 -14698633 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 2 594 394 231 66 0 chrY 1205134 1205225 -14697330 - B1F SINE Alu -35 114 18 2 594 277 271 0 0 chrY 1206406 1206465 -14696090 - ID4 SINE ID -13 70 12 2 594 4715 87 44 14 chrY 1207785 1208484 -14694071 - Lx3_Mus LINE L1 -8 7001 6282 2 594 587 212 87 17 chrY 1209763 1209878 -14692677 + B1_Mur1 SINE Alu 1 123 -26 2 594 363 330 106 91 chrY 1209980 1210300 -14692255 - RLTR18B LTR ERVK -5 507 183 2 594 382 314 81 109 chrY 1210339 1210586 -14691969 - RLTR18B LTR ERVK -245 267 28 2 594 2244 134 92 35 chrY 1210990 1211446 -14691109 + RLTR45 LTR ERVK 1 482 0 2 594 26 30 0 0 chrY 1212223 1212256 -14690299 + AT_rich Low_complexity Low_complexity 1 33 0 2 594 7223 70 7 0 chrY 1212541 1213555 -14689000 + L1_Mus1 LINE L1 5547 6567 0 2 594 624 42 31 0 chrY 1213573 1213669 -14688886 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 2 594 3713 188 36 42 chrY 1214019 1214879 -14687676 - RLTR13A LTR ERVK 0 855 1 2 594 218 191 14 29 chrY 1215401 1215471 -14687084 + T-rich Low_complexity Low_complexity 3 71 0 2 594 551 316 107 33 chrY 1216330 1216572 -14685983 + MamRep137 DNA TcMar? 6 265 -179 2 594 319 379 60 0 chrY 1218697 1218813 -14683742 + PB1 SINE Alu 1 123 -4 2 594 243 295 143 0 chrY 1218951 1219056 -14683499 - PB1 SINE Alu -7 120 1 2 594 185 0 39 118 chrY 1219484 1219535 -14683020 + A-rich Low_complexity Low_complexity 2 48 0 2 594 182 305 29 69 chrY 1221304 1221406 -14681149 + L2b LINE L2 3263 3360 -15 2 594 380 217 14 0 chrY 1221516 1221585 -14680970 - ID4 SINE ID -13 70 1 2 594 280 209 86 56 chrY 1221717 1221879 -14680676 - L1MA6 LINE L1 -161 6139 5973 2 594 258 175 56 101 chrY 1222039 1222128 -14680427 - PB1D10 SINE Alu 0 117 33 2 594 246 339 105 50 chrY 1223233 1223472 -14679083 + L2 LINE L2 2674 2925 -494 2 594 450 0 0 0 chrY 1224571 1224621 -14677934 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 594 596 38 13 0 chrY 1224704 1224783 -14677772 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 594 561 260 0 39 chrY 1225507 1225635 -14676920 + B1F SINE Alu 1 123 -26 2 594 447 297 27 55 chrY 1225635 1225652 -14676903 + ID_B1 SINE B4 82 222 -2 2 594 259 291 37 25 chrY 1225661 1225742 -14676813 + ID4_ SINE ID 2 83 0 2 594 24 0 0 0 chrY 1226046 1226070 -14676485 + AT_rich Low_complexity Low_complexity 1 24 0 2 594 32 26 0 0 chrY 1227022 1227061 -14675494 + AT_rich Low_complexity Low_complexity 1 39 0 2 594 23 0 0 0 chrY 1227125 1227148 -14675407 + AT_rich Low_complexity Low_complexity 1 23 0 2 594 181 120 32 194 chrY 1228943 1229005 -14673550 - MIRm SINE MIR -105 171 120 2 594 19612 34 1 2 chrY 1229390 1232567 -14669988 - L1Md_T LINE L1 0 6582 3406 2 594 334 349 26 35 chrY 1234315 1234541 -14668014 + L1MDb LINE L1 1043 1266 -5143 2 594 729 227 0 0 chrY 1234541 1234673 -14667882 + B3 SINE B2 1 132 -84 2 594 588 29 0 0 chrY 1234675 1234745 -14667810 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 594 22 0 0 0 chrY 1234755 1234777 -14667778 + AT_rich Low_complexity Low_complexity 1 22 0 2 594 292 308 72 36 chrY 1234803 1234914 -14667641 + PB1D9 SINE Alu 1 115 -5 2 594 1055 106 0 0 chrY 1235411 1235553 -14667002 - B1_Mus2 SINE Alu 0 147 6 2 594 806 70 9 0 chrY 1235734 1235848 -14666707 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 2 594 25 31 0 0 chrY 1235983 1236015 -14666540 + AT_rich Low_complexity Low_complexity 1 32 0 2 594 270 288 25 0 chrY 1236478 1236558 -14665997 - B1F SINE Alu -3 146 65 2 594 328 236 2 3 chrY 1236553 1236634 -14665921 - B1F SINE Alu -14 135 50 2 594 396 304 139 0 chrY 1236634 1236749 -14665806 - B1F1 SINE Alu -16 133 3 2 594 287 311 39 54 chrY 1236749 1236796 -14665759 - B1F2 SINE Alu -100 49 1 2 594 181 146 0 40 chrY 1236984 1237034 -14665521 + A-rich Low_complexity Low_complexity 4 51 0 2 594 267 348 111 38 chrY 1237041 1237262 -14665293 + B4A SINE B4 9 245 -47 2 594 450 0 0 0 chrY 1237297 1237347 -14665208 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 594 193 373 67 8 chrY 1237698 1237817 -14664738 + MIRb SINE MIR 28 153 -115 2 594 632 333 174 3 chrY 1238233 1238555 -14664000 + MTD LTR MaLR 43 419 0 2 594 2386 298 76 11 chrY 1238555 1239468 -14663087 + Lx8 LINE L1 6252 7223 -250 2 594 263 238 16 0 chrY 1239476 1239539 -14663016 - RMER19B LTR ERVK 0 902 839 2 594 424 336 15 0 chrY 1239623 1239760 -14662795 + MLT1C LTR MaLR 42 180 -287 2 594 605 276 30 40 chrY 1240299 1240499 -14662056 + B3 SINE B2 2 199 -17 2 594 363 96 0 0 chrY 1240509 1240561 -14661994 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 594 1137 290 36 52 chrY 1241849 1242315 -14660240 - Lx7 LINE L1 -359 7337 6879 2 594 321 329 0 0 chrY 1242487 1242560 -14659995 - B4A SINE B4 -2 290 218 2 594 495 276 31 8 chrY 1242568 1242696 -14659859 - B3 SINE B2 0 216 86 2 594 345 278 69 69 chrY 1242992 1243166 -14659389 + RMER5 LTR ERV1 344 517 -17 2 594 657 239 29 98 chrY 1243291 1243495 -14659060 + B3A SINE B2 9 198 0 2 594 277 328 7 7 chrY 1244045 1244180 -14658375 - L1M5 LINE L1 -275 5849 5715 2 594 357 325 82 13 chrY 1244544 1244703 -14657852 + MER5A DNA MER1_type 16 185 -4 2 594 185 305 62 10 chrY 1244853 1244949 -14657606 - L2a LINE L2 -298 3128 3028 2 594 2654 130 36 0 chrY 1244957 1245350 -14657205 - MTB_Mm LTR MaLR 0 407 1 2 594 276 353 43 35 chrY 1245980 1246121 -14656434 + RSINE1 SINE B4 11 152 -13 2 594 387 0 0 0 chrY 1246125 1246168 -14656387 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 594 474 18 0 0 chrY 1246253 1246308 -14656247 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 594 377 341 93 40 chrY 1246333 1246563 -14655992 - B4A SINE B4 -46 246 3 2 594 29004 111 42 8 chrY 1246704 1248285 -14654270 + L1Md_F2 LINE L1 332 1969 -3914 2 594 329 0 24 0 chrY 1248285 1248326 -14654229 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 594 29004 91 6 6 chrY 1248326 1251943 -14650612 + L1Md_F2 LINE L1 1970 5585 -298 2 594 6479 122 7 8 chrY 1251944 1252915 -14649640 + L1Md_F2 LINE L1 5588 6559 -23 2 594 370 36 18 18 chrY 1252915 1252972 -14649583 + (TAA)n Simple_repeat Simple_repeat 1 57 0 2 594 6479 122 7 8 chrY 1252972 1252990 -14649565 + L1Md_F2 LINE L1 6560 6576 -6 2 594 378 324 123 14 chrY 1253141 1253280 -14649275 + B1F SINE Alu 1 135 -14 2 594 274 224 0 0 chrY 1253259 1253308 -14649247 + B1F SINE Alu 78 126 -23 2 594 1176 61 0 0 chrY 1253541 1253688 -14648867 + B1_Mm SINE Alu 1 147 0 2 594 279 93 0 0 chrY 1253689 1253732 -14648823 + (A)n Simple_repeat Simple_repeat 1 43 0 3 594 29 0 0 0 chrY 1254186 1254215 -14648340 + AT_rich Low_complexity Low_complexity 1 29 0 3 594 530 319 108 33 chrY 1254216 1254605 -14647950 - L1MD LINE L1 -2951 3195 2778 3 594 596 252 39 26 chrY 1254605 1254689 -14647866 + ID SINE ID 1 86 -138 3 594 238 364 81 0 chrY 1254689 1254788 -14647767 + PB1D9 SINE Alu 1 107 -13 3 594 646 248 51 0 chrY 1255176 1255313 -14647242 - B1_Mur2 SINE Alu -5 144 1 3 594 634 238 21 90 chrY 1255317 1255368 -14647187 - B2_Mm2 SINE B2 -19 176 127 3 594 660 13 0 0 chrY 1255368 1255445 -14647110 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 594 770 191 15 1 chrY 1255445 1255582 -14646973 - B3 SINE B2 -78 138 1 3 594 860 215 92 5 chrY 1256173 1256379 -14646176 - URR1A DNA MER1_type -1 225 2 3 594 227 339 41 33 chrY 1256537 1256659 -14645896 - MLT1A1 LTR MaLR -14 491 369 3 594 283 307 75 106 chrY 1257001 1257227 -14645328 - MLT1A1 LTR MaLR -187 221 3 3 594 541 283 21 28 chrY 1257958 1258100 -14644455 + MTD LTR MaLR 31 171 -248 3 594 769 175 7 20 chrY 1259414 1259560 -14642995 - B1_Mur4 SINE Alu -1 149 6 3 594 296 248 51 123 chrY 1259442 1259580 -14642975 - MT2B LTR ERVL -322 279 152 3 594 837 163 0 13 chrY 1259594 1259743 -14642812 - B1_Mm SINE Alu 0 147 1 3 594 684 275 34 36 chrY 1261301 1261518 -14641037 - B3A SINE B2 -1 197 1 3 594 1653 240 62 17 chrY 1262481 1262494 -14640061 + MTC LTR MaLR 1 13 -408 3 594 1362 164 34 104 chrY 1262494 1262848 -14639707 - ORR1A4 LTR MaLR 0 329 1 3 594 1653 240 62 17 chrY 1262848 1263237 -14639318 + MTC LTR MaLR 14 421 0 3 594 1095 247 129 68 chrY 1263365 1263520 -14639035 - MTD LTR MaLR 0 419 225 3 594 1441 175 116 34 chrY 1263520 1263874 -14638681 - ORR1C2 LTR MaLR 0 384 2 3 594 1095 247 129 68 chrY 1263874 1264113 -14638442 - MTD LTR MaLR -195 224 1 3 594 990 165 16 0 chrY 1264725 1264919 -14637636 - C573_MM Other Other 0 522 326 3 594 1902 147 3 3 chrY 1264968 1265302 -14637253 - C573_MM Other Other -188 334 1 3 594 896 238 75 60 chrY 1265837 1266186 -14636369 + Lx8 LINE L1 7115 7468 -5 3 594 399 215 141 0 chrY 1266213 1266334 -14636221 + MER2 DNA MER2_type 90 227 -118 3 594 272 324 63 127 chrY 1266346 1266579 -14635976 + B4A SINE B4 75 292 0 3 594 384 287 91 23 chrY 1266577 1266709 -14635846 + MER2 DNA MER2_type 199 339 -6 3 594 813 233 213 6 chrY 1267243 1267369 -14635186 + ORR1D1 LTR MaLR 5 166 -218 3 594 582 71 0 0 chrY 1267369 1267453 -14635102 + (TC)n Simple_repeat Simple_repeat 2 85 0 3 594 862 192 52 1 chrY 1267453 1267641 -14634914 + ORR1D1 LTR MaLR 167 383 -1 3 594 21 36 0 0 chrY 1267651 1267679 -14634876 + AT_rich Low_complexity Low_complexity 1 28 0 3 594 349 97 32 0 chrY 1267744 1267806 -14634749 + ORR1B1 LTR MaLR 54 117 -277 3 594 1652 172 60 6 chrY 1267808 1268124 -14634431 + ORR1B1 LTR MaLR 62 394 0 3 594 1809 197 6 9 chrY 1268148 1268486 -14634069 + ORR1A1 LTR MaLR 3 339 -7 3 594 603 71 0 0 chrY 1268511 1268596 -14633959 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 594 3948 167 74 23 chrY 1268612 1269444 -14633111 + RLTR13D5 LTR ERVK 10 1023 0 3 594 372 125 0 0 chrY 1269668 1269732 -14632823 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 594 283 341 63 31 chrY 1270872 1270999 -14631556 - B4A SINE B4 -105 187 57 3 594 251 200 17 0 chrY 1271046 1271106 -14631449 + L1_Mur1 LINE L1 5370 5430 -456 3 594 191 294 151 12 chrY 1271167 1271253 -14631302 + L3 LINE CR1 4003 4100 -389 3 594 1797 224 44 9 chrY 1271472 1271923 -14630632 - Lx3A LINE L1 -1 6980 6514 3 594 456 35 0 0 chrY 1272057 1272115 -14630440 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 594 8409 47 11 20 chrY 1273159 1275038 -14627517 + L1Md_A LINE L1 439 2297 -3586 3 594 3377 44 0 128 chrY 1275038 1275538 -14627017 - RLTR10C LTR ERVK 0 436 1 3 594 7623 42 0 0 chrY 1275538 1276474 -14626081 - MMERVK10C-int LTR ERVK 0 7581 6646 3 594 8331 39 0 0 chrY 1276460 1277481 -14625074 - MMERVK10C-int LTR ERVK -1771 5810 4790 3 594 22816 47 0 1 chrY 1277474 1280351 -14622204 - MMERVK10C-int LTR ERVK -3838 3743 870 3 594 1282 104 38 5 chrY 1280349 1280651 -14621904 - MMERVK10C-int LTR ERVK -7182 399 1 3 594 8468 10 0 0 chrY 1280655 1282285 -14620270 - L1Md_A LINE L1 0 6582 4953 3 594 2893 47 3 0 chrY 1282282 1282662 -14619893 - L1_Mm LINE L1 -3206 2677 2297 3 594 3556 42 21 0 chrY 1282668 1283095 -14619460 + RLTR10C LTR ERVK 1 436 0 3 594 35503 20 3 7 chrY 1283106 1288307 -14614248 + L1Md_T LINE L1 411 5586 -297 3 594 8016 54 1 0 chrY 1288307 1289301 -14613254 + L1Md_T LINE L1 5587 6581 -1 3 594 287 123 0 44 chrY 1289318 1289386 -14613169 + A-rich Low_complexity Low_complexity 1 65 0 3 594 285 29 0 0 chrY 1289707 1289741 -14612814 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 594 345 258 23 0 chrY 1290040 1290172 -14612383 - Lx LINE L1 -4 6650 6516 3 594 1949 193 49 18 chrY 1290420 1290868 -14611687 + Lx3_Mus LINE L1 6548 7009 0 3 594 27 0 0 0 chrY 1291267 1291294 -14611261 + AT_rich Low_complexity Low_complexity 1 27 0 3 594 230 391 26 9 chrY 1291334 1291450 -14611105 - RSINE1 SINE B4 -35 130 13 3 594 15866 67 9 0 chrY 1291938 1294864 -14607691 - L1Md_F3 LINE L1 0 6584 3630 3 594 4143 39 2 2 chrY 1294864 1295357 -14607198 + MT2_Mm LTR ERVL 1 493 0 3 594 34100 84 9 1 chrY 1295357 1300666 -14601889 + MERVL_2A-int LTR ERVL 1 5453 -308 3 594 357 125 26 53 chrY 1300685 1300761 -14601794 + ORR1A3-int LTR MaLR 567 640 -1323 3 594 272 53 0 0 chrY 1300761 1300799 -14601756 + MERVL_2A-int LTR ERVL 5448 5485 0 3 594 4221 30 0 12 chrY 1300799 1301298 -14601257 + MT2_Mm LTR ERVL 1 493 0 3 594 16650 99 3 10 chrY 1301298 1304515 -14598040 - L1Md_F3 LINE L1 -2249 3634 441 3 594 663 150 134 0 chrY 1304514 1304641 -14597914 - Lx2A LINE L1 -1210 5798 5655 3 594 3175 166 6 12 chrY 1304645 1305298 -14597257 + L1_Mur2 LINE L1 3786 4434 -1443 3 594 354 332 51 55 chrY 1305298 1305419 -14597136 + MER44B DNA MER2_type 65 174 -376 3 594 1614 170 90 0 chrY 1305419 1305719 -14596836 + ORR1A2 LTR MaLR 1 327 0 3 594 354 332 51 55 chrY 1305719 1305852 -14596703 + MER44B DNA MER2_type 175 317 -233 3 594 1043 103 0 0 chrY 1306376 1306521 -14596034 - B1_Mus2 SINE Alu -2 145 1 3 594 442 281 90 8 chrY 1307499 1307621 -14594934 + B3A SINE B2 6 137 -61 3 594 261 0 0 0 chrY 1307635 1307664 -14594891 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 594 1007 98 0 0 chrY 1307665 1307798 -14594757 - B1_Mm SINE Alu -12 135 3 3 594 225 229 0 40 chrY 1307798 1307848 -14594707 + MTC LTR MaLR 6 53 -368 3 594 3111 206 63 16 chrY 1307827 1308513 -14594042 - MTC-int LTR MaLR -538 720 3 3 594 1714 182 172 8 chrY 1308515 1308875 -14593680 - MTC LTR MaLR -2 419 1 3 594 387 279 93 29 chrY 1309303 1309443 -14593112 - ORR1E LTR MaLR -210 149 1 3 594 531 31 0 0 chrY 1309990 1310055 -14592500 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 594 309 215 0 0 chrY 1310055 1310148 -14592407 + GA-rich Low_complexity Low_complexity 2 94 0 3 594 575 294 52 12 chrY 1310148 1310320 -14592235 - ORR1D1 LTR MaLR -193 181 3 3 74 3854 56 2 18 chrY 1310338 1310831 -14591724 + L1Md_F2 LINE L1 6097 6581 -1 3 595 383 270 93 23 chrY 1311351 1311480 -14591075 - MER2 DNA MER2_type -9 336 199 3 595 283 353 70 65 chrY 1311500 1311700 -14590855 - B4A SINE B4 -6 286 86 3 595 419 256 120 0 chrY 1311711 1311844 -14590711 - MER2 DNA MER2_type -108 237 89 3 595 824 237 54 57 chrY 1311886 1312217 -14590338 - Lx8 LINE L1 -29 7444 7115 3 595 235 324 28 0 chrY 1312622 1312693 -14589862 - MER5A DNA MER1_type -115 74 2 3 595 1924 134 0 3 chrY 1312749 1313071 -14589484 + C573_MM Other Other 14 334 -188 3 595 942 161 16 5 chrY 1313120 1313314 -14589241 + C573_MM Other Other 326 521 -1 3 595 321 278 0 72 chrY 1313384 1313481 -14589074 + L1MB8 LINE L1 6089 6178 0 3 595 763 254 38 91 chrY 1313925 1314382 -14588173 + ORR1C2 LTR MaLR 1 419 0 3 595 390 314 95 0 chrY 1314401 1314538 -14588017 + MTD LTR MaLR 270 419 0 3 595 1773 220 56 5 chrY 1314662 1315055 -14587500 - MTC LTR MaLR 0 421 9 3 595 1435 159 63 115 chrY 1315073 1315421 -14587134 + ORR1B1 LTR MaLR 65 394 0 3 595 659 257 31 16 chrY 1316409 1316603 -14585952 + B3A SINE B2 1 197 -1 3 595 932 163 0 0 chrY 1318198 1318345 -14584210 + B1_Mm SINE Alu 1 147 0 3 595 224 193 35 0 chrY 1318346 1318403 -14584152 + A-rich Low_complexity Low_complexity 2 60 0 3 595 693 222 0 20 chrY 1318417 1318552 -14584003 + B1_Mur4 SINE Alu 6 138 -12 3 595 198 0 0 0 chrY 1318552 1318574 -14583981 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3 595 693 222 0 20 chrY 1318574 1318585 -14583970 + B1_Mur4 SINE Alu 139 149 -1 3 595 227 133 22 0 chrY 1318586 1318631 -14583924 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 595 309 19 18 54 chrY 1319652 1319708 -14582847 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 3 595 617 256 75 29 chrY 1320329 1320502 -14582053 - MTD LTR MaLR -237 182 2 3 595 276 312 85 126 chrY 1321213 1321546 -14581009 + MLT1A1 LTR MaLR 3 340 -25 3 595 394 164 46 46 chrY 1321595 1321704 -14580851 + YREP_Mm Unknown Unknown 24 132 -1680 3 595 5242 108 7 21 chrY 1321934 1322819 -14579736 + YREP_Mm Unknown Unknown 119 990 -822 3 595 396 283 51 42 chrY 1322996 1323114 -14579441 - B1F SINE Alu -2 147 29 3 595 250 260 109 10 chrY 1323457 1323558 -14578997 - Lx8 LINE L1 -268 7205 7095 3 595 524 269 99 126 chrY 1324025 1324207 -14578348 + MER2 DNA MER2_type 20 200 -145 3 595 461 287 17 0 chrY 1324207 1324322 -14578233 + PB1 SINE Alu 3 119 -8 3 595 524 269 99 126 chrY 1324322 1324441 -14578114 + MER2 DNA MER2_type 201 313 -32 3 595 780 238 67 10 chrY 1325055 1325250 -14577305 + B3 SINE B2 1 206 -10 3 595 208 133 0 32 chrY 1325391 1325453 -14577102 + T-rich Low_complexity Low_complexity 1 60 0 3 595 1087 89 7 0 chrY 1325453 1325599 -14576956 - B1_Mus1 SINE Alu 0 148 2 3 595 23 0 0 0 chrY 1326178 1326201 -14576354 + AT_rich Low_complexity Low_complexity 1 23 0 3 595 2748 138 105 76 chrY 1326783 1327334 -14575221 + RMER2 LTR ERV1 1 567 0 3 595 1423 95 0 23 chrY 1327334 1327549 -14575006 + ORR1A2-int LTR MaLR 1754 1963 0 3 595 1991 116 79 0 chrY 1327549 1327852 -14574703 + ORR1A2 LTR MaLR 1 327 0 3 595 891 196 0 0 chrY 1327852 1328025 -14574530 - RLTR42-int LTR ERVK -2648 2874 2702 3 595 606 14 0 0 chrY 1328152 1328223 -14574332 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 595 787 184 59 0 chrY 1328500 1328652 -14573903 + RLTR23 LTR ERV1 270 430 0 3 595 778 91 0 0 chrY 1328706 1328816 -14573739 - B1_Mus2 SINE Alu -5 142 33 4 595 498 203 0 0 chrY 1328816 1328939 -14573616 + (TG)n Simple_repeat Simple_repeat 2 124 0 4 595 290 276 39 26 chrY 1328952 1329030 -14573525 - B1F SINE Alu -53 96 18 4 595 1523 166 261 6 chrY 1329159 1329504 -14573051 - RLTR10C LTR ERVK -3 433 1 4 595 18973 94 6 6 chrY 1329504 1332529 -14570026 - MMERVK10C-int LTR ERVK 0 7680 4623 4 595 1484 201 90 6 chrY 1333085 1333451 -14569104 - RMER16-int LTR ERVK -4755 651 255 4 595 1434 113 4 0 chrY 1333598 1333837 -14568718 - MMERVK10C-int LTR ERVK -6629 952 713 4 595 1076 150 3 27 chrY 1333848 1334130 -14568425 - MMERVK10C-int LTR ERVK -7212 369 41 4 595 1985 168 73 17 chrY 1334138 1334550 -14568005 - RLTR10C LTR ERVK -1 435 1 4 595 246 314 74 33 chrY 1334671 1334793 -14567762 - B1F SINE Alu -9 140 14 4 595 215 263 17 17 chrY 1335043 1335101 -14567454 + B4 SINE B4 3 60 -232 4 595 579 256 33 0 chrY 1335839 1335960 -14566595 + ID_B1 SINE B4 91 215 -9 4 595 400 308 14 84 chrY 1336066 1336208 -14566347 + B4 SINE B4 18 149 -143 4 595 250 147 29 0 chrY 1336599 1336667 -14565888 + (TTTG)n Simple_repeat Simple_repeat 4 73 0 4 595 234 105 0 0 chrY 1338343 1338381 -14564174 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 4 595 186 43 0 0 chrY 1338922 1338945 -14563610 + (A)n Simple_repeat Simple_repeat 1 23 0 4 595 381 43 0 0 chrY 1340043 1340090 -14562465 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 595 1092 138 17 11 chrY 1340246 1340422 -14562133 - B2_Mm2 SINE B2 -17 178 2 4 595 512 125 12 0 chrY 1340897 1340977 -14561578 - B1_Mur4 SINE Alu -2 148 68 4 595 410 0 20 0 chrY 1341528 1341578 -14560977 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 595 252 265 0 14 chrY 1341584 1341653 -14560902 + Lx7 LINE L1 7226 7293 -403 4 595 231 151 18 54 chrY 1342389 1342445 -14560110 + MIRb SINE MIR 114 167 -101 4 595 256 48 0 45 chrY 1342770 1342814 -14559741 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 595 654 100 0 0 chrY 1344114 1344214 -14558341 + (TG)n Simple_repeat Simple_repeat 2 101 0 4 595 1876 113 23 84 chrY 1344271 1344515 -14558040 - ORR1A2 LTR MaLR -1 326 108 4 595 605 66 0 0 chrY 1344515 1344606 -14557949 - L1_Mus3 LINE L1 0 6638 6548 4 595 1876 113 23 84 chrY 1344606 1344708 -14557847 - ORR1A2 LTR MaLR -220 107 1 4 595 298 67 67 0 chrY 1345252 1345312 -14557243 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 4 595 977 101 0 11 chrY 1345312 1345492 -14557063 + (GA)n Simple_repeat Simple_repeat 2 179 0 4 595 5043 98 1 26 chrY 1345671 1346567 -14555988 - L1_Mus1 LINE L1 -613 5954 5079 4 595 2514 143 18 29 chrY 1346620 1347066 -14555489 - BGLII_B LTR ERVK 0 441 1 4 595 225 94 0 0 chrY 1347087 1347119 -14555436 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 595 1070 239 38 55 chrY 1347120 1347466 -14555089 - Lx5 LINE L1 -1 7049 6710 4 595 216 111 0 0 chrY 1347486 1347522 -14555033 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 4 595 1928 241 36 20 chrY 1347542 1348100 -14554455 - Lx4B LINE L1 -333 6725 6159 4 595 288 200 0 0 chrY 1348100 1348185 -14554370 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 595 2376 193 49 5 chrY 1348200 1348835 -14553720 - Lx5 LINE L1 -938 6112 5449 4 595 298 252 78 29 chrY 1349235 1349337 -14553218 + RLTR23 LTR ERV1 324 430 0 4 595 1720 161 14 8 chrY 1349340 1349697 -14552858 - Lx5 LINE L1 -428 5449 5091 4 595 1067 286 65 70 chrY 1349699 1350142 -14552413 + BGLII_B LTR ERVK 1 441 0 4 595 710 128 28 7 chrY 1350872 1351014 -14551541 + Lx LINE L1 6502 6646 -8 4 595 4775 93 9 3 chrY 1352192 1352885 -14549670 - L1_Mus3 LINE L1 0 6638 5942 4 595 1218 62 23 0 chrY 1353318 1353494 -14549061 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 595 404 320 26 58 chrY 1354631 1354943 -14547612 + MuRRS4-int LTR ERV1 401 780 -6821 4 595 1299 301 56 14 chrY 1355277 1355905 -14546650 + MuRRS4-int LTR ERV1 1040 1693 -3370 4 595 3470 262 70 56 chrY 1356001 1357561 -14544994 + MMERGLN-int LTR ERV1 4726 6306 -1250 4 595 3842 69 20 2 chrY 1357939 1358447 -14544108 + L1Md_F2 LINE L1 6063 6579 -3 4 595 396 241 64 28 chrY 1358497 1358532 -14544023 + RLTR28 LTR ERVL 379 412 -112 4 595 303 28 0 0 chrY 1358532 1358568 -14543987 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 4 595 396 241 64 28 chrY 1358568 1358673 -14543882 + RLTR28 LTR ERVL 413 523 -1 4 595 924 216 11 6 chrY 1358753 1358930 -14543625 + RMER10A LTR ERVL 7 184 -258 4 595 1057 192 39 0 chrY 1359007 1359236 -14543319 + RMER10A LTR ERVL 205 442 0 4 595 228 315 19 0 chrY 1359695 1359749 -14542806 + RSINE1 SINE B4 66 120 -45 4 595 657 125 34 25 chrY 1359744 1359862 -14542693 + B1_Mus1 SINE Alu 30 147 -1 4 595 23 54 0 0 chrY 1361441 1361478 -14541077 + AT_rich Low_complexity Low_complexity 1 37 0 4 595 232 379 21 10 chrY 1363871 1363967 -14538588 + PB1D10 SINE Alu 21 117 0 4 595 218 370 109 0 chrY 1364014 1364106 -14538449 + B1F SINE Alu 1 102 -47 4 595 326 70 0 34 chrY 1364299 1364358 -14538197 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 4 595 525 243 239 19 chrY 1365024 1365179 -14537376 + B4 SINE B4 84 272 -20 4 595 972 288 167 27 chrY 1365243 1365722 -14536833 + RMER15 LTR ERVL 29 574 -1 4 595 269 338 0 108 chrY 1366153 1366236 -14536319 - B1_Mus1 SINE Alu -64 84 11 4 595 15217 19 0 0 chrY 1366236 1368075 -14534480 + L1Md_T LINE L1 3748 5586 -297 4 595 8034 56 0 0 chrY 1368075 1369071 -14533484 + L1Md_T LINE L1 5587 6582 0 4 595 333 121 0 0 chrY 1369099 1369140 -14533415 + (T)n Simple_repeat Simple_repeat 1 41 0 4 595 737 136 17 8 chrY 1369140 1369259 -14533296 - PB1D9 SINE Alu 0 120 1 4 595 333 121 0 0 chrY 1369259 1369275 -14533280 + (T)n Simple_repeat Simple_repeat 1 16 0 4 595 7022 167 31 16 chrY 1369297 1369732 -14532823 + Lx2 LINE L1 4427 4866 -1017 4 595 267 54 0 0 chrY 1369732 1369769 -14532786 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4 595 7945 146 34 13 chrY 1369769 1371838 -14530717 + Lx2 LINE L1 4867 6990 -7 4 595 306 0 0 0 chrY 1371853 1371887 -14530668 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 595 680 191 14 42 chrY 1372378 1372520 -14530035 + B1_Mur1 SINE Alu 5 142 -7 4 595 1143 83 0 0 chrY 1372534 1372679 -14529876 + B1_Mus2 SINE Alu 2 146 -1 4 595 254 231 48 9 chrY 1372682 1372787 -14529768 + A-rich Low_complexity Low_complexity 2 110 0 4 595 343 235 0 96 chrY 1372789 1372883 -14529672 + MT2B LTR ERVL 180 264 -337 4 595 751 72 0 0 chrY 1372808 1372905 -14529650 + B1_Mm SINE Alu 38 134 -13 4 595 225 0 0 0 chrY 1372906 1372931 -14529624 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 595 34 72 0 0 chrY 1372931 1373000 -14529555 + AT_rich Low_complexity Low_complexity 1 69 0 4 595 497 217 108 8 chrY 1373474 1373604 -14528951 + B3 SINE B2 23 165 -51 4 595 585 0 0 0 chrY 1373610 1373675 -14528880 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 595 414 57 0 0 chrY 1373676 1373729 -14528826 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 595 23 33 0 0 chrY 1374144 1374174 -14528381 + AT_rich Low_complexity Low_complexity 1 30 0 4 595 511 311 67 11 chrY 1374202 1374381 -14528174 + ID_B1 SINE B4 8 196 -28 4 595 231 276 129 8 chrY 1374279 1374403 -14528152 + B1F SINE Alu 10 148 -1 4 595 500 292 174 0 chrY 1374592 1374770 -14527785 - B3 SINE B2 -7 209 1 4 595 962 92 35 0 chrY 1374934 1375075 -14527480 - B1_Mus2 SINE Alu 0 147 2 4 595 354 45 0 0 chrY 1375115 1375159 -14527396 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 595 300 154 0 0 chrY 1375218 1375270 -14527285 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 595 305 256 32 43 chrY 1375301 1375395 -14527160 + B3 SINE B2 124 216 0 4 595 231 324 40 0 chrY 1375434 1375508 -14527047 - ID2 SINE ID -5 78 2 4 595 24 32 0 0 chrY 1375555 1375586 -14526969 + AT_rich Low_complexity Low_complexity 1 31 0 4 595 21 36 0 0 chrY 1375661 1375689 -14526866 + AT_rich Low_complexity Low_complexity 1 28 0 4 595 1531 182 155 57 chrY 1375854 1376222 -14526333 + MTC LTR MaLR 10 413 -8 4 595 21 0 0 0 chrY 1376367 1376388 -14526167 + AT_rich Low_complexity Low_complexity 1 21 0 4 595 180 0 0 0 chrY 1376468 1376488 -14526067 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 595 239 254 30 40 chrY 1376571 1376664 -14525891 - PB1D10 SINE Alu 0 120 32 4 595 1048 62 20 46 chrY 1376694 1376845 -14525710 - B1_Mm SINE Alu 0 147 1 4 595 458 290 86 14 chrY 1376848 1376988 -14525567 + B4A SINE B4 136 285 -7 4 595 268 343 117 10 chrY 1377074 1377177 -14525378 + PB1D10 SINE Alu 4 117 0 4 595 465 19 0 0 chrY 1377870 1377924 -14524631 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 595 259 212 176 0 chrY 1379057 1379142 -14523413 + L1VL2 LINE L1 577 676 -5659 4 595 1403 216 29 76 chrY 1379159 1379351 -14523204 + Lx2B LINE L1 916 1108 -5549 4 595 2756 49 9 0 chrY 1379351 1379696 -14522859 + L1Md_F2 LINE L1 6234 6581 -1 4 595 1403 216 29 76 chrY 1379696 1379708 -14522847 + Lx2B LINE L1 1109 1109 -5548 4 595 714 97 0 9 chrY 1379708 1379823 -14522732 + L1_Mus2 LINE L1 6453 6566 0 4 595 15869 179 149 15 chrY 1379823 1383936 -14518619 + Lx2B LINE L1 1109 5763 -114 4 595 1341 75 16 11 chrY 1383936 1384125 -14518430 + L1Md_A LINE L1 6391 6580 -2 4 595 15869 186 66 8 chrY 1384125 1384674 -14517881 + Lx2B LINE L1 5764 6341 -659 4 595 386 276 118 7 chrY 1384734 1384869 -14517686 + MIRc SINE MIR 88 237 -31 4 595 24 0 0 0 chrY 1385170 1385194 -14517361 + AT_rich Low_complexity Low_complexity 1 24 0 4 595 252 326 65 65 chrY 1385645 1385845 -14516710 + MLT1E2 LTR MaLR 23 222 -405 4 595 258 279 32 16 chrY 1385967 1386091 -14516464 + Lx7 LINE L1 7307 7432 -264 4 595 27 62 0 0 chrY 1386244 1386292 -14516263 + AT_rich Low_complexity Low_complexity 1 48 0 4 595 522 345 24 6 chrY 1386334 1386500 -14516055 + B4 SINE B4 116 284 -8 4 595 232 333 194 6 chrY 1386562 1386722 -14515833 + MLT1E2-int LTR MaLR 562 751 -738 4 595 201 176 27 13 chrY 1388375 1388450 -14514105 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 595 284 276 92 0 chrY 1388490 1388588 -14513967 + MLT1E2 LTR MaLR 73 179 -448 4 595 23 0 0 0 chrY 1389443 1389466 -14513089 + AT_rich Low_complexity Low_complexity 1 23 0 4 595 24 85 0 0 chrY 1389798 1389857 -14512698 + AT_rich Low_complexity Low_complexity 1 59 0 5 595 21 36 0 0 chrY 1390167 1390195 -14512360 + AT_rich Low_complexity Low_complexity 1 28 0 5 595 429 362 7 0 chrY 1390288 1390426 -14512129 - RSINE1 SINE B4 -15 150 12 5 595 263 240 0 0 chrY 1390610 1390660 -14511895 - ID SINE ID -165 59 10 5 595 914 187 0 26 chrY 1390840 1390994 -14511561 - B1_Mur4 SINE Alu 0 150 1 5 595 449 320 32 39 chrY 1391506 1391662 -14510893 + RSINE1 SINE B4 2 156 -9 5 595 267 265 52 110 chrY 1391731 1391922 -14510633 + B2_Mm2 SINE B2 8 187 -8 5 595 1331 255 185 13 chrY 1392113 1392665 -14509890 + RLTR40 LTR ERVK 124 770 -47 5 595 220 302 0 0 chrY 1392837 1392890 -14509665 + B3A SINE B2 4 56 -142 5 595 23 0 0 0 chrY 1393098 1393121 -14509434 + AT_rich Low_complexity Low_complexity 1 23 0 5 595 312 311 39 54 chrY 1393178 1393307 -14509248 + ID_B1 SINE B4 86 212 -12 5 595 459 0 0 0 chrY 1393311 1393362 -14509193 + (CAA)n Simple_repeat Simple_repeat 2 52 0 5 595 21 36 0 0 chrY 1394499 1394527 -14508028 + AT_rich Low_complexity Low_complexity 1 28 0 5 595 243 0 0 0 chrY 1394606 1394633 -14507922 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 595 499 312 14 21 chrY 1394633 1394777 -14507778 - B1_Mur1 SINE Alu -5 144 2 5 595 4922 221 128 16 chrY 1395505 1397916 -14504639 + L1_Rod LINE L1 437 3181 -2666 5 595 1200 201 8 20 chrY 1397905 1398154 -14504401 + L1_Mur2 LINE L1 520 765 -6321 5 595 432 158 0 0 chrY 1398173 1398249 -14504306 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 595 3985 125 45 22 chrY 1398249 1398961 -14503594 + L1_Mur2 LINE L1 2050 2777 -3100 5 595 13852 147 23 27 chrY 1398956 1401616 -14500939 + L1_Mur1 LINE L1 1705 4353 -1533 5 595 976 227 65 2 chrY 1401618 1401854 -14500701 + RMER17D2 LTR ERVK 556 954 -4 5 595 1403 225 126 7 chrY 1401883 1402326 -14500229 + Lx9 LINE L1 7149 7644 0 5 595 243 279 66 0 chrY 1402672 1402733 -14499822 + B1F2 SINE Alu 46 110 -39 5 595 456 281 203 21 chrY 1403308 1403544 -14499011 + B4 SINE B4 5 283 -9 5 595 206 228 0 34 chrY 1403544 1403603 -14498952 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 5 595 207 231 0 0 chrY 1404422 1404461 -14498094 + A-rich Low_complexity Low_complexity 1 39 0 5 595 351 65 0 0 chrY 1404461 1404507 -14498048 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 5 595 1141 69 0 0 chrY 1405477 1405621 -14496934 - B1_Mus1 SINE Alu 0 148 5 5 595 23 68 0 0 chrY 1406511 1406555 -14496000 + AT_rich Low_complexity Low_complexity 1 44 0 5 595 185 217 23 8 chrY 1406590 1406720 -14495835 + (TA)n Simple_repeat Simple_repeat 1 132 0 5 595 34 24 0 0 chrY 1406735 1406776 -14495779 + AT_rich Low_complexity Low_complexity 1 41 0 5 595 1596 132 112 0 chrY 1406918 1407205 -14495350 - L1_Mus3 LINE L1 -1 6637 6319 5 595 15103 168 116 34 chrY 1407206 1409317 -14493238 - L1VL2 LINE L1 -907 4979 2899 5 595 956 108 7 0 chrY 1409317 1409465 -14493090 + (TTCC)n Simple_repeat Simple_repeat 3 151 0 5 595 15103 168 116 34 chrY 1409465 1410627 -14491928 - L1VL2 LINE L1 -2988 2898 1402 5 595 1141 75 7 0 chrY 1410627 1410774 -14491781 - B1_Mus1 SINE Alu 0 148 1 5 595 15103 138 82 36 chrY 1410774 1411215 -14491340 - L1VL2 LINE L1 -4485 1401 974 5 595 2924 86 2 15 chrY 1411215 1411616 -14490939 - MTA_Mm LTR MaLR 0 396 1 5 595 4749 134 78 37 chrY 1411616 1412105 -14490450 - L1VL2 LINE L1 -5661 973 434 5 595 1744 261 199 29 chrY 1412108 1412951 -14489604 - Lx7 LINE L1 -927 6769 5783 5 595 1719 193 53 11 chrY 1412953 1413330 -14489225 - Lx7 LINE L1 -209 5671 5279 5 595 535 167 77 36 chrY 1413338 1413474 -14489081 - RMER1B Other Other -9 1057 936 5 595 204 67 0 0 chrY 1413495 1413525 -14489030 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 595 6347 185 48 63 chrY 1414216 1415585 -14486970 + L1_Mur2 LINE L1 756 2061 -3816 5 595 315 0 0 0 chrY 1415585 1415620 -14486935 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 595 6347 176 30 83 chrY 1415620 1416284 -14486271 + L1_Mur2 LINE L1 2062 2741 -3136 5 595 1289 174 143 0 chrY 1416329 1416622 -14485933 - L1_Mur2 LINE L1 -540 5337 5003 5 595 19255 72 5 5 chrY 1416628 1419936 -14482619 - L1Md_F2 LINE L1 -12 6570 3269 5 595 3579 51 6 2 chrY 1419929 1420471 -14482084 + L1Md_F2 LINE L1 5501 6044 -538 5 595 2197 77 15 1 chrY 1420497 1420906 -14481649 + IAPEY3-int LTR ERVK 7234 7680 0 5 595 2971 50 0 0 chrY 1420906 1421263 -14481292 + IAPEY2_LTR LTR ERVK 1 357 0 5 595 4111 66 2 4 chrY 1421266 1421796 -14480759 + L1Md_F2 LINE L1 6042 6570 -12 5 595 23 0 0 0 chrY 1422058 1422081 -14480474 + AT_rich Low_complexity Low_complexity 1 23 0 5 595 382 325 102 12 chrY 1422438 1422693 -14479862 + Lx8 LINE L1 6940 7217 -256 5 595 210 71 0 0 chrY 1423061 1423089 -14479466 + (A)n Simple_repeat Simple_repeat 1 28 0 5 595 958 340 44 33 chrY 1423285 1423744 -14478811 - Lx9 LINE L1 -804 6840 6377 5 595 277 306 72 8 chrY 1423795 1423905 -14478650 + L1_Rod LINE L1 4741 4859 -988 5 595 1332 53 0 0 chrY 1423905 1424074 -14478481 + L1Md_T LINE L1 6414 6582 0 5 595 277 306 72 8 chrY 1424074 1424088 -14478467 + L1_Rod LINE L1 4860 4873 -974 5 595 225 139 0 0 chrY 1424140 1424176 -14478379 - PB1D9 SINE Alu -70 50 15 5 595 568 243 152 31 chrY 1424433 1424624 -14477931 + B3 SINE B2 3 216 0 5 595 591 267 20 14 chrY 1424833 1424981 -14477574 - B1_Mur2 SINE Alu 0 149 1 5 595 264 236 27 27 chrY 1425103 1425177 -14477378 + MTC LTR MaLR 6 79 -342 5 595 319 319 18 9 chrY 1425599 1425713 -14476842 + Lx8 LINE L1 6634 6748 -725 5 595 695 200 7 27 chrY 1427992 1428141 -14474414 + B1_Mur4 SINE Alu 5 150 0 5 595 2732 277 113 19 chrY 1428590 1428974 -14473581 - ORR1D2-int LTR MaLR -88 1282 1187 5 595 738 93 15 52 chrY 1428974 1429110 -14473445 + L1_Mus2 LINE L1 6434 6564 -2 5 595 2732 287 99 69 chrY 1429110 1430260 -14472295 - ORR1D2-int LTR MaLR -184 1186 1 5 595 548 307 79 26 chrY 1430262 1430498 -14472057 - ORR1D2 LTR MaLR -2 368 128 5 595 237 276 0 0 chrY 1431304 1431362 -14471193 + L1M5 LINE L1 5534 5591 -573 5 595 806 321 29 4 chrY 1431386 1431667 -14470888 - B4A SINE B4 -4 288 1 5 595 846 0 0 0 chrY 1431689 1431783 -14470772 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 595 562 289 0 8 chrY 1432430 1432559 -14469996 + B1_Mur1 SINE Alu 2 129 -20 5 595 243 258 0 16 chrY 1432572 1432635 -14469920 + GA-rich Low_complexity Low_complexity 2 63 0 5 595 442 270 30 0 chrY 1432679 1432779 -14469776 - Lx8 LINE L1 -1173 6300 6198 5 595 305 195 171 0 chrY 1432787 1432869 -14469686 - HAL1-3A_ME LINE L1 -788 2070 1975 5 595 607 188 6 22 chrY 1432869 1433049 -14469506 + (TA)n Simple_repeat Simple_repeat 2 178 0 5 595 258 229 0 0 chrY 1433093 1433163 -14469392 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 595 2954 292 68 9 chrY 1433190 1433606 -14468949 + Lx8 LINE L1 6368 6789 -684 5 595 477 0 0 0 chrY 1433606 1433659 -14468896 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 595 2954 292 68 9 chrY 1433659 1434258 -14468297 + Lx8 LINE L1 6790 7442 -31 5 595 2232 295 57 92 chrY 1434817 1436055 -14466500 - Lx9 LINE L1 0 7644 6450 5 595 894 122 0 0 chrY 1436055 1436194 -14466361 + (TATG)n Simple_repeat Simple_repeat 2 140 0 5 595 974 251 153 44 chrY 1436358 1436999 -14465556 - L1_Rod LINE L1 -1120 4727 4017 5 595 6262 92 11 6 chrY 1437464 1438409 -14464146 - L1VL4 LINE L1 -1600 1959 1011 5 595 1080 24 0 0 chrY 1438414 1438541 -14464014 + (TTC)n Simple_repeat Simple_repeat 2 128 0 5 595 234 0 0 0 chrY 1438543 1438572 -14463983 - L1Md_F2 LINE L1 -19 6563 6535 5 595 1902 92 78 13 chrY 1438573 1438882 -14463673 - RLTR10B2 LTR ERVK -19 346 18 5 595 7193 55 1 1 chrY 1438931 1439817 -14462738 - L1Md_F2 LINE L1 -22 6560 5675 5 595 2502 82 3 3 chrY 1439817 1440145 -14462410 + L1Md_F2 LINE L1 5348 5675 -208 5 595 4109 130 4 29 chrY 1440144 1440900 -14461655 - L1VL4 LINE L1 -2547 1012 280 5 595 4066 226 92 58 chrY 1440908 1441447 -14461108 - Lx2B LINE L1 -5 7053 6412 5 74 2567 110 69 3 chrY 1441447 1441822 -14460733 - MTB LTR MaLR 0 400 1 5 596 4066 225 90 59 chrY 1441822 1442559 -14459996 - Lx2B LINE L1 -589 6411 5645 5 596 1374 196 27 76 chrY 1442560 1442929 -14459626 + L1_Mur3 LINE L1 1862 2212 -3668 5 596 800 194 48 5 chrY 1442933 1443140 -14459415 + L1_Mur3 LINE L1 1211 1426 -4454 5 596 1216 191 12 8 chrY 1443135 1443394 -14459161 + L1_Mur3 LINE L1 2188 2447 -3433 5 596 238 104 41 20 chrY 1443392 1443441 -14459114 + Lx6 LINE L1 7409 7458 -2 5 596 513 276 152 24 chrY 1443709 1444091 -14458464 + L1MA9 LINE L1 5878 6308 -4 5 596 3574 42 53 9 chrY 1444445 1444900 -14457655 - IAPLTR2_Mm LTR ERVK 0 475 1 5 596 1620 179 19 56 chrY 1445627 1445987 -14456568 - ORR1B1 LTR MaLR -7 387 41 5 596 3376 46 0 128 chrY 1447798 1448298 -14454257 + RLTR10C LTR ERVK 1 436 0 5 596 1140 78 0 0 chrY 1448586 1448727 -14453828 - B1_Mm SINE Alu -6 141 1 5 596 1103 75 7 0 chrY 1448778 1448924 -14453631 - B1_Mus1 SINE Alu 0 148 2 5 596 231 282 41 33 chrY 1448996 1449117 -14453438 + GA-rich Low_complexity Low_complexity 3 124 0 5 596 238 283 59 29 chrY 1449267 1449369 -14453186 - Tigger5 DNA MER2_type -1 2405 2301 5 596 488 330 89 42 chrY 1449359 1449565 -14452990 - Tigger5 DNA MER2_type -2152 254 38 5 596 234 0 0 0 chrY 1449565 1449591 -14452964 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 596 488 330 89 42 chrY 1449591 1449621 -14452934 - Tigger5 DNA MER2_type -2369 37 8 5 596 396 292 0 6 chrY 1449774 1449865 -14452690 + ID4 SINE ID 1 89 -63 5 596 1599 6 0 0 chrY 1449865 1450045 -14452510 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 596 299 320 0 64 chrY 1450045 1450063 -14452492 + BC1_Mm scRNA scRNA 90 103 -49 5 596 21 36 0 0 chrY 1450216 1450244 -14452311 + AT_rich Low_complexity Low_complexity 1 28 0 5 596 875 216 62 10 chrY 1450244 1450436 -14452119 - B3 SINE B2 -14 202 1 5 596 803 295 54 0 chrY 1450437 1450695 -14451860 - Lx8 LINE L1 -246 7227 6956 5 596 491 258 171 17 chrY 1450696 1450723 -14451832 - ORR1D2 LTR MaLR 0 370 344 5 596 434 78 0 94 chrY 1450723 1450808 -14451747 - L1Md_F2 LINE L1 -11 6571 6495 5 596 491 258 171 17 chrY 1450808 1450961 -14451594 - ORR1D2 LTR MaLR -27 343 164 5 596 1382 263 65 21 chrY 1450959 1451344 -14451211 + MTD LTR MaLR 18 419 0 5 596 2493 100 3 0 chrY 1451344 1451715 -14450840 - L1_Mm LINE L1 -680 5203 4832 5 596 11636 37 0 0 chrY 1451716 1453872 -14448683 - L1Md_A LINE L1 0 6582 4427 5 596 36292 45 0 3 chrY 1453878 1460355 -14442200 - L1Md_T LINE L1 0 6585 31 6 596 25335 35 6 9 chrY 1460358 1464409 -14438146 - L1Md_A LINE L1 -1441 4442 413 5 596 6637 81 1 1 chrY 1464409 1465354 -14437201 - L1_Mm LINE L1 -1041 4842 3898 5 596 7198 72 1 5 chrY 1465354 1466765 -14435790 + L1Md_F2 LINE L1 5178 6579 -3 6 596 30 0 0 0 chrY 1466787 1466817 -14435738 + AT_rich Low_complexity Low_complexity 1 30 0 6 596 336 78 0 59 chrY 1467231 1467299 -14435256 + L1Md_F2 LINE L1 6519 6582 0 6 596 2232 274 61 37 chrY 1467316 1467943 -14434612 - ORR1D2-int LTR MaLR -136 1234 593 5 596 959 209 6 6 chrY 1467943 1468121 -14434434 - MTC LTR MaLR -1 420 243 6 596 739 250 41 81 chrY 1468127 1468385 -14434170 - ORR1D2-int LTR MaLR -1032 338 50 5 596 243 0 0 0 chrY 1468385 1468412 -14434143 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 596 739 249 49 91 chrY 1468412 1468439 -14434116 - ORR1D2-int LTR MaLR -1321 49 23 5 596 1071 266 12 78 chrY 1468442 1468764 -14433791 - ORR1D2 LTR MaLR -36 334 34 5 596 945 258 64 0 chrY 1468774 1469038 -14433517 - Lx8 LINE L1 -517 6956 6676 6 596 277 329 55 88 chrY 1469223 1469239 -14433316 + ORR1C2-int LTR MaLR 8 22 -1236 6 596 2840 35 0 14 chrY 1469239 1469587 -14432968 + ORR1A0 LTR MaLR 1 343 -3 6 596 9675 102 81 5 chrY 1469587 1470992 -14431563 + ORR1C2-int LTR MaLR 23 1499 -293 6 596 549 0 0 0 chrY 1470992 1471053 -14431502 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 596 9675 108 80 9 chrY 1471053 1471266 -14431289 + ORR1C2-int LTR MaLR 1500 1723 -69 6 596 1824 178 64 6 chrY 1471270 1471627 -14430928 + ORR1C2 LTR MaLR 5 382 -2 6 596 466 333 0 0 chrY 1471637 1471751 -14430804 - B1_Mur2 SINE Alu -34 115 2 6 596 1118 268 81 17 chrY 1471930 1472276 -14430279 + ORR1D2 LTR MaLR 3 370 0 6 596 2049 262 11 144 chrY 1472276 1472936 -14429619 + ORR1D2-int LTR MaLR 1 570 -800 6 596 1365 74 0 5 chrY 1472936 1473127 -14429428 - L1Md_F2 LINE L1 -2 6580 6391 6 596 2049 262 11 144 chrY 1473127 1473221 -14429334 + ORR1D2-int LTR MaLR 571 654 -716 6 596 1133 285 80 25 chrY 1473289 1473616 -14428939 + ORR1D2 LTR MaLR 24 368 -2 6 596 4209 257 65 33 chrY 1473639 1474320 -14428235 + ORR1D2-int LTR MaLR 47 759 -611 6 596 3577 89 2 0 chrY 1474320 1474792 -14427763 - MT2C_Mm LTR ERVL 0 475 3 6 596 4209 254 65 32 chrY 1474792 1475351 -14427204 + ORR1D2-int LTR MaLR 760 1328 -42 6 596 1135 252 88 18 chrY 1475380 1475719 -14426836 + ORR1D2 LTR MaLR 6 368 -2 6 596 2217 235 35 122 chrY 1475733 1475911 -14426644 + ORR1D2-int LTR MaLR 738 876 -494 6 596 360 43 0 0 chrY 1475911 1475957 -14426598 + (TTA)n Simple_repeat Simple_repeat 3 48 0 6 596 2217 235 35 122 chrY 1475957 1476348 -14426207 + ORR1D2-int LTR MaLR 877 1251 -119 6 596 546 264 113 10 chrY 1476348 1476543 -14426012 - B3 SINE B2 0 216 2 6 596 2217 235 35 122 chrY 1476543 1476666 -14425889 + ORR1D2-int LTR MaLR 1252 1370 0 6 596 234 0 0 0 chrY 1477238 1477264 -14425291 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 596 1233 0 0 0 chrY 1477264 1477400 -14425155 + (GA)n Simple_repeat Simple_repeat 2 138 0 6 596 5265 128 12 4 chrY 1477543 1478950 -14423605 - L1VL2 LINE L1 -2090 1525 107 6 596 1741 158 13 29 chrY 1478950 1479256 -14423299 - RLTR13D5 LTR ERVK -718 305 5 6 596 810 110 0 0 chrY 1479267 1479413 -14423142 + (TG)n Simple_repeat Simple_repeat 2 147 0 6 596 567 240 83 108 chrY 1479791 1480142 -14422413 - RLTR15 LTR ERVK -17 342 1 6 596 308 248 84 56 chrY 1480186 1480293 -14422262 - B3A SINE B2 -1 197 88 6 596 558 0 0 0 chrY 1480885 1480947 -14421608 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 596 674 295 84 27 chrY 1480948 1481317 -14421238 + Lx8 LINE L1 7083 7472 -1 6 596 303 93 0 0 chrY 1481321 1481364 -14421191 + (TAAG)n Simple_repeat Simple_repeat 4 46 0 6 596 315 0 0 0 chrY 1481400 1481435 -14421120 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 596 1551 153 61 70 chrY 1481530 1481885 -14420670 + ORR1B1 LTR MaLR 1 384 -10 6 596 21 0 0 0 chrY 1482393 1482414 -14420141 + AT_rich Low_complexity Low_complexity 1 21 0 6 596 294 257 207 18 chrY 1482664 1482775 -14419780 + ORR1E LTR MaLR 10 141 -218 6 596 210 37 0 0 chrY 1483008 1483035 -14419520 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 596 249 301 30 0 chrY 1483710 1483843 -14418712 + (TCTG)n Simple_repeat Simple_repeat 2 138 0 6 596 230 210 0 31 chrY 1483850 1483914 -14418641 + T-rich Low_complexity Low_complexity 1 62 0 6 596 707 201 0 6 chrY 1483924 1484002 -14418553 + polypyrimidine Low_complexity Low_complexity 103 180 0 6 596 1028 141 0 6 chrY 1484002 1484180 -14418375 + (TCC)n Simple_repeat Simple_repeat 3 179 0 6 596 707 201 0 6 chrY 1484180 1484281 -14418274 + polypyrimidine Low_complexity Low_complexity 2 102 0 6 596 233 293 26 13 chrY 1484281 1484357 -14418198 + CT-rich Low_complexity Low_complexity 6 82 0 6 596 2715 189 214 48 chrY 1484654 1485431 -14417124 + RMER17A2 LTR ERVK 1 906 0 6 596 21 0 0 0 chrY 1486357 1486378 -14416177 + AT_rich Low_complexity Low_complexity 1 21 0 6 596 555 85 0 0 chrY 1487113 1487195 -14415360 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 596 1961 182 3 6 chrY 1487230 1487568 -14414987 - ORR1A1 LTR MaLR -7 339 3 6 596 1428 204 55 58 chrY 1487592 1487936 -14414619 - ORR1B1 LTR MaLR 0 394 52 6 596 920 249 200 19 chrY 1488055 1488222 -14414333 - ORR1D1 LTR MaLR 0 374 165 6 596 531 31 0 0 chrY 1488222 1488287 -14414268 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 596 920 249 200 19 chrY 1488287 1488434 -14414121 - ORR1D1 LTR MaLR -210 164 4 6 596 269 301 126 31 chrY 1488966 1489093 -14413462 - MER2B DNA MER2_type -8 328 190 6 596 312 320 81 70 chrY 1489129 1489314 -14413241 - B4A SINE B4 -22 270 84 6 596 563 154 62 0 chrY 1489328 1489458 -14413097 + C573_MM Other Other 381 518 -4 6 596 307 235 0 115 chrY 1489535 1489631 -14412924 + L1MB8 LINE L1 6093 6177 -1 6 596 731 264 192 64 chrY 1490082 1490315 -14412240 + MTD LTR MaLR 1 221 -198 6 596 1235 172 171 44 chrY 1490315 1490493 -14412062 + ORR1C2 LTR MaLR 2 191 -193 6 596 714 102 0 0 chrY 1490493 1490620 -14411935 + (TC)n Simple_repeat Simple_repeat 2 128 0 6 596 1235 172 171 44 chrY 1490620 1490781 -14411774 + ORR1C2 LTR MaLR 192 384 0 6 596 731 264 192 64 chrY 1490781 1490875 -14411680 + MTD LTR MaLR 222 370 -49 6 596 4372 74 6 23 chrY 1490879 1491530 -14411025 - L1_Mm LINE L1 -1464 4419 3780 6 596 3142 66 0 9 chrY 1491528 1491957 -14410598 + L1Md_F2 LINE L1 5162 5586 -297 6 596 7545 67 12 4 chrY 1491958 1492944 -14409611 + L1Md_F2 LINE L1 5588 6581 -1 6 596 719 241 7 0 chrY 1493155 1493292 -14409263 + B3 SINE B2 1 138 -78 6 596 945 0 0 0 chrY 1493300 1493405 -14409150 + (TC)n Simple_repeat Simple_repeat 1 105 0 6 596 203 61 0 29 chrY 1493409 1493443 -14409112 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 596 333 294 82 0 chrY 1493493 1493578 -14408977 + B1_Mur3 SINE Alu 1 92 -57 6 596 227 103 14 68 chrY 1493592 1493665 -14408890 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 6 596 297 89 0 0 chrY 1493752 1493797 -14408758 + (T)n Simple_repeat Simple_repeat 1 45 0 6 596 264 77 0 0 chrY 1494028 1494067 -14408488 + (T)n Simple_repeat Simple_repeat 1 39 0 6 596 234 0 0 0 chrY 1494284 1494310 -14408245 + (T)n Simple_repeat Simple_repeat 1 26 0 6 596 216 86 0 0 chrY 1494350 1494385 -14408170 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 596 519 286 113 14 chrY 1495263 1495476 -14407079 + MER2 DNA MER2_type 11 244 -101 6 596 522 279 18 0 chrY 1495460 1495571 -14406984 + PB1 SINE Alu 7 119 -8 6 596 21 0 0 0 chrY 1495801 1495822 -14406733 + AT_rich Low_complexity Low_complexity 1 21 0 6 596 769 233 66 15 chrY 1496315 1496511 -14406044 + B3 SINE B2 1 206 -10 6 596 210 111 22 22 chrY 1496652 1496698 -14405857 + T-rich Low_complexity Low_complexity 3 48 0 6 596 1183 75 0 0 chrY 1496699 1496845 -14405710 - B1_Mus1 SINE Alu 0 148 3 6 596 22 0 0 0 chrY 1497445 1497467 -14405088 + AT_rich Low_complexity Low_complexity 1 22 0 6 596 197 329 72 12 chrY 1497468 1497551 -14405004 + L3 LINE CR1 3508 3595 -894 6 596 3202 137 73 15 chrY 1498064 1498596 -14403959 + RMER2 LTR ERV1 1 563 -4 6 596 1370 132 0 19 chrY 1498598 1498814 -14403741 + ORR1A2-int LTR MaLR 1752 1963 0 6 596 1241 134 11 0 chrY 1498814 1499001 -14403554 + ORR1A2 LTR MaLR 1 189 -138 6 596 1191 115 0 5 chrY 1499807 1500000 -14402555 + L1Md_A LINE L1 625 816 -5908 6 596 35866 43 1 1 chrY 1500000 1504770 -14397785 + L1Md_A LINE L1 817 5585 -298 1 596 8096 55 0 0 chrY 1504771 1505767 -14396788 + L1Md_A LINE L1 5587 6582 0 1 596 6187 146 27 2 chrY 1505784 1506759 -14395796 + ETnERV2-int LTR ERVK 3686 4684 -2722 2 596 3001 80 12 0 chrY 1506752 1507154 -14395401 + ETnERV2-int LTR ERVK 5356 5762 -1644 2 596 6088 140 83 100 chrY 1507143 1507353 -14395202 + RLTR45-int LTR ERVK 4673 4900 -2344 3 596 411 21 0 0 chrY 1507353 1507401 -14395154 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 4 596 6088 140 83 100 chrY 1507401 1508614 -14393941 + RLTR45-int LTR ERVK 4901 6071 -1173 3 596 1108 70 0 0 chrY 1508652 1508820 -14393735 + RLTR13D5 LTR ERVK 186 450 -573 5 596 309 274 29 0 chrY 1508858 1508960 -14393595 + RLTR45-int LTR ERVK 6784 6888 -1329 3 596 457 294 30 20 chrY 1509077 1509275 -14393280 + RLTR45-int LTR ERVK 7642 7841 -376 3 596 847 109 58 0 chrY 1510274 1510412 -14392143 + ORR1A2 LTR MaLR 182 327 0 6 596 1857 201 177 63 chrY 1510412 1510879 -14391676 - RLTR42-int LTR ERVK -2648 2874 2336 7 596 360 0 0 0 chrY 1510879 1510919 -14391636 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 8 596 1857 222 66 93 chrY 1510919 1511414 -14391141 - RLTR42-int LTR ERVK -3187 2335 1872 7 596 257 100 20 0 chrY 1511766 1511816 -14390739 + (TA)n Simple_repeat Simple_repeat 1 51 0 9 596 801 103 0 0 chrY 1512593 1512710 -14389845 + (TG)n Simple_repeat Simple_repeat 2 118 0 1 596 399 309 40 46 chrY 1512761 1512934 -14389621 + RLTR17 LTR ERVK 125 296 -396 1 596 7824 38 0 0 chrY 1512934 1513848 -14388707 - L1Md_T LINE L1 -3 6579 5666 1 596 324 0 0 0 chrY 1513908 1513944 -14388611 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 596 687 203 52 0 chrY 1514228 1514381 -14388174 + RLTR23 LTR ERV1 270 430 0 1 596 1019 110 0 0 chrY 1514424 1514569 -14387986 - B1_Mus1 SINE Alu -1 147 3 1 596 926 216 56 66 chrY 1514953 1515241 -14387314 + Lx6 LINE L1 6501 6785 -675 1 596 964 116 0 27 chrY 1515241 1515391 -14387164 + B1_Mus1 SINE Alu 2 147 -1 1 596 309 136 0 0 chrY 1515398 1515464 -14387091 + (CAAAAA)n Simple_repeat Simple_repeat 4 69 0 1 596 2377 261 91 14 chrY 1515465 1515577 -14386978 + Lx6 LINE L1 6740 6871 -589 1 596 987 114 0 0 chrY 1515577 1515752 -14386803 + (GA)n Simple_repeat Simple_repeat 2 176 0 1 596 2377 261 91 14 chrY 1515752 1516278 -14386277 + Lx6 LINE L1 6872 7433 -27 1 596 1597 157 121 42 chrY 1516278 1516657 -14385898 + RLTR9E LTR ERVK 1 409 0 2 596 2377 261 91 14 chrY 1516657 1516686 -14385869 + Lx6 LINE L1 7434 7459 -1 1 596 3583 121 72 34 chrY 1517399 1517982 -14384573 - RLTR1D LTR ERV1 0 605 1 2 596 202 203 14 28 chrY 1518625 1518696 -14383859 + T-rich Low_complexity Low_complexity 3 72 0 2 596 490 274 11 51 chrY 1518823 1519000 -14383555 - RLTR18 LTR ERVK -434 182 13 2 596 437 265 69 29 chrY 1519423 1519598 -14382957 - RLTR18B LTR ERVK -104 408 227 2 596 761 283 39 55 chrY 1519695 1520002 -14382553 - RLTR18 LTR ERVK -302 314 13 2 596 348 43 0 0 chrY 1520085 1520131 -14382424 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 596 242 286 13 79 chrY 1522008 1522160 -14380395 + CT-rich Low_complexity Low_complexity 4 145 0 2 596 911 174 6 0 chrY 1522269 1522447 -14380108 + CT-rich Low_complexity Low_complexity 2 180 0 2 596 696 56 0 0 chrY 1522453 1522542 -14380013 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 2 596 204 0 83 0 chrY 1522564 1522600 -14379955 + (TTG)n Simple_repeat Simple_repeat 1 39 0 3 596 275 298 11 56 chrY 1522647 1522736 -14379819 - B1F SINE Alu -57 92 8 3 596 4500 115 109 1 chrY 1522756 1523470 -14379085 - L1Md_F2 LINE L1 -8 6574 5784 3 596 537 248 33 0 chrY 1524773 1524894 -14377661 + ID_B1 SINE B4 91 215 -9 3 596 280 371 0 70 chrY 1525000 1525142 -14377413 + B4 SINE B4 18 149 -143 3 596 1356 42 0 0 chrY 1525526 1525693 -14376862 + (TTC)n Simple_repeat Simple_repeat 3 169 0 3 596 194 91 0 29 chrY 1525696 1525730 -14376825 + (TCC)n Simple_repeat Simple_repeat 3 35 0 3 596 240 163 0 0 chrY 1527441 1527484 -14375071 + C-rich Low_complexity Low_complexity 4 46 0 3 596 202 341 11 11 chrY 1528087 1528176 -14374379 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 3 596 1009 162 22 11 chrY 1528883 1529064 -14373491 - B2_Mm2 SINE B2 -11 184 2 3 596 466 135 0 0 chrY 1529541 1529615 -14372940 - B1_Mus2 SINE Alu -2 145 72 4 596 264 330 128 11 chrY 1530065 1530252 -14372303 + Lx7 LINE L1 7085 7293 -403 4 596 267 268 49 61 chrY 1530316 1530479 -14372076 + Lx7 LINE L1 7534 7694 -2 4 596 227 185 0 53 chrY 1531040 1531097 -14371458 + MIRb SINE MIR 114 167 -101 4 596 261 32 95 0 chrY 1531427 1531490 -14371065 + (CAAAA)n Simple_repeat Simple_repeat 4 72 0 4 596 787 237 45 15 chrY 1534716 1534917 -14367638 - Lx9 LINE L1 -622 7022 6816 4 596 373 234 70 96 chrY 1534968 1535124 -14367431 + Lx9 LINE L1 7074 7225 -419 4 596 3307 150 21 30 chrY 1535325 1535931 -14366624 - Lx2 LINE L1 0 6997 6397 4 596 2819 63 40 0 chrY 1535931 1536282 -14366273 + RLTR10B2 LTR ERVK 1 365 0 4 596 1329 89 7 6 chrY 1536282 1536469 -14366086 + MMERVK10C-int LTR ERVK 1 210 -6271 4 596 1414 23 6 11 chrY 1536558 1536737 -14365818 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 4 596 230 91 0 68 chrY 1536737 1536796 -14365759 + GA-rich Low_complexity Low_complexity 2 56 0 4 596 289 156 0 0 chrY 1536796 1536841 -14365714 + MMERVK10C-int LTR ERVK 93 137 -6405 5 596 2676 54 21 21 chrY 1536844 1537050 -14365505 + MMERVK10C-int LTR ERVK 652 859 -1128 5 596 7409 31 6 3 chrY 1537050 1537903 -14364652 - RLTR13A LTR ERVK 0 855 1 5 596 2676 54 21 21 chrY 1537903 1538036 -14364519 + MMERVK10C-int LTR ERVK 860 991 -996 5 596 281 260 49 20 chrY 1538325 1538427 -14364128 + MMERVK10C-int LTR ERVK 1462 1566 -6015 5 596 314 164 36 0 chrY 1538435 1538490 -14364065 + IAP-d-int LTR ERVK 447 503 -6039 5 596 1522 102 102 0 chrY 1538490 1538716 -14363839 + IAP-d-int LTR ERVK 5007 5255 -1287 5 596 4299 95 1 98 chrY 1538712 1539398 -14363157 + MMERVK10C-int LTR ERVK 6962 7581 0 5 596 3005 52 0 27 chrY 1539398 1539771 -14362784 + RLTR10B2 LTR ERVK 1 363 -2 5 596 1322 185 70 16 chrY 1539773 1540061 -14362494 - Lx2 LINE L1 -595 6402 6090 4 596 342 0 0 0 chrY 1540882 1540920 -14361635 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 596 4503 12 0 0 chrY 1540920 1541410 -14361145 - MT2_Mm LTR ERVL -3 490 1 5 596 321 0 0 0 chrY 1541410 1541448 -14361107 - MERVL-int LTR ERVL 0 5485 5448 5 596 366 123 13 40 chrY 1541448 1541524 -14361031 - ORR1A3-int LTR MaLR -1323 640 567 5 596 24711 22 0 0 chrY 1541524 1544264 -14358291 - MERVL-int LTR ERVL -114 5371 2631 5 596 389 22 0 0 chrY 1544257 1544303 -14358252 - MERVL-int LTR ERVL -5439 46 1 5 596 4532 12 0 0 chrY 1544303 1544796 -14357759 - MT2_Mm LTR ERVL 0 493 1 5 596 995 59 7 0 chrY 1544812 1544947 -14357608 + (GA)n Simple_repeat Simple_repeat 1 136 0 5 596 3158 215 24 49 chrY 1546547 1547812 -14354743 + L1_Mur3 LINE L1 753 1980 -3900 5 596 299 241 60 12 chrY 1547967 1548051 -14354504 - B4A SINE B4 -201 91 4 5 596 6038 179 38 23 chrY 1548541 1550198 -14352357 + Lx2B LINE L1 5316 6998 -2 5 596 2434 228 86 25 chrY 1550542 1551302 -14351253 + Lx9 LINE L1 6828 7633 -11 6 596 441 0 0 0 chrY 1551998 1552047 -14350508 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 596 265 56 0 0 chrY 1555715 1555751 -14346804 + RLTR10B LTR ERVK 1 36 -256 6 596 1828 67 6 119 chrY 1555751 1556071 -14346484 + RLTR10B LTR ERVK 9 292 0 6 596 273 140 0 0 chrY 1556281 1556289 -14346266 + (A)n Simple_repeat Simple_repeat 1 8 0 6 596 1163 107 6 0 chrY 1556289 1556467 -14346088 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 596 273 140 0 0 chrY 1556467 1556508 -14346047 + (A)n Simple_repeat Simple_repeat 1 41 0 6 596 407 19 0 19 chrY 1556821 1556874 -14345681 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 6 596 231 151 18 54 chrY 1557198 1557254 -14345301 - MIRb SINE MIR -101 167 114 6 596 233 182 0 0 chrY 1557991 1558035 -14344520 - Lx7 LINE L1 -403 7293 7250 6 596 320 0 25 0 chrY 1558066 1558106 -14344449 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 596 494 122 0 0 chrY 1558663 1558737 -14343818 + B1_Mur4 SINE Alu 75 148 -2 7 596 1077 144 17 11 chrY 1559212 1559388 -14343167 + B2_Mm2 SINE B2 2 178 -17 7 596 381 75 0 0 chrY 1559545 1559598 -14342957 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 596 234 105 0 0 chrY 1561255 1561293 -14341262 + (GGGGA)n Simple_repeat Simple_repeat 4 41 0 7 596 286 139 28 0 chrY 1562954 1563026 -14339529 + (CAAA)n Simple_repeat Simple_repeat 4 77 0 7 596 402 21 0 0 chrY 1563378 1563425 -14339130 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 596 400 308 14 84 chrY 1563446 1563588 -14338967 - B4 SINE B4 -143 149 18 7 596 598 273 48 47 chrY 1563669 1563870 -14338685 - ID_B1 SINE B4 -53 239 50 7 596 215 263 17 17 chrY 1564553 1564611 -14337944 - B4 SINE B4 -232 60 3 7 596 213 288 95 14 chrY 1564871 1564945 -14337610 + B1_Mus2 SINE Alu 23 102 -45 7 596 2067 165 70 17 chrY 1565104 1565517 -14337038 + RLTR10C LTR ERVK 1 435 -1 7 596 1099 156 3 27 chrY 1565525 1565807 -14336748 + MMERVK10C-int LTR ERVK 41 369 -7212 7 596 1400 121 4 0 chrY 1565818 1566057 -14336498 + MMERVK10C-int LTR ERVK 713 952 -6629 7 596 1496 198 90 6 chrY 1566204 1566570 -14335985 + RMER16-int LTR ERVK 255 651 -4755 8 596 18859 97 6 6 chrY 1567126 1570151 -14332404 + MMERVK10C-int LTR ERVK 4623 7680 0 7 596 1756 151 0 99 chrY 1570151 1570496 -14332059 + RLTR10C LTR ERVK 1 311 0 7 596 281 289 39 26 chrY 1570625 1570703 -14331852 + B1F SINE Alu 18 96 -53 8 596 423 216 0 0 chrY 1570716 1570827 -14331728 + (CA)n Simple_repeat Simple_repeat 2 112 0 8 596 772 97 0 0 chrY 1570828 1570941 -14331614 + B1_Mus2 SINE Alu 34 146 -1 8 596 759 197 59 0 chrY 1570989 1571141 -14331414 - RLTR23 LTR ERV1 0 430 270 8 596 621 0 0 0 chrY 1571418 1571487 -14331068 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 596 926 185 0 0 chrY 1571614 1571787 -14330768 + RLTR42-int LTR ERVK 2702 2874 -2648 8 596 1983 116 79 0 chrY 1571787 1572090 -14330465 - ORR1A2 LTR MaLR 0 327 1 8 596 1423 95 0 23 chrY 1572090 1572305 -14330250 - ORR1A2-int LTR MaLR 0 1963 1754 8 596 2973 133 109 27 chrY 1572305 1572829 -14329726 - RMER2 LTR ERV1 0 567 1 8 597 23 0 0 0 chrY 1573407 1573430 -14329125 + AT_rich Low_complexity Low_complexity 1 23 0 8 597 1108 76 14 0 chrY 1574022 1574167 -14328388 + B1_Mus1 SINE Alu 2 148 0 9 597 227 138 35 0 chrY 1574167 1574225 -14328330 + A-rich Low_complexity Low_complexity 1 60 0 9 597 750 255 50 15 chrY 1574367 1574566 -14327989 - B3 SINE B2 -10 206 1 9 597 508 278 93 119 chrY 1575181 1575300 -14327255 - MER2 DNA MER2_type -32 313 201 9 597 420 304 17 0 chrY 1575300 1575415 -14327140 - PB1 SINE Alu -8 119 3 9 597 508 278 93 119 chrY 1575415 1575597 -14326958 - MER2 DNA MER2_type -145 200 20 9 597 250 260 109 10 chrY 1576060 1576161 -14326394 + Lx8 LINE L1 7095 7205 -268 9 597 396 283 51 42 chrY 1576504 1576622 -14325933 + B1F SINE Alu 29 147 -2 9 597 5353 103 10 8 chrY 1576797 1577667 -14324888 - YREP_Mm Unknown Unknown -822 990 119 9 597 372 173 46 46 chrY 1577897 1578006 -14324549 - YREP_Mm Unknown Unknown -1680 132 24 9 597 276 307 80 131 chrY 1578110 1578388 -14324167 - MLT1A1 LTR MaLR -79 286 3 9 597 229 322 28 22 chrY 1578873 1579051 -14323504 - L1M1 LINE L1 -397 5903 5725 9 597 523 280 68 25 chrY 1579098 1579259 -14323296 + MTD LTR MaLR 2 169 -250 1 597 215 95 0 45 chrY 1579903 1579947 -14322608 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 597 215 220 33 17 chrY 1580942 1581002 -14321553 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 1 597 243 61 0 0 chrY 1581003 1581036 -14321519 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1 597 657 210 0 0 chrY 1581047 1581171 -14321384 - B1_Mur4 SINE Alu -21 129 6 1 597 213 135 38 19 chrY 1581184 1581237 -14321318 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 1 597 988 136 0 0 chrY 1581242 1581389 -14321166 - B1_Mm SINE Alu 0 147 1 1 597 684 61 0 0 chrY 1582511 1582609 -14319946 - L1_Mm LINE L1 -2773 3110 3013 1 597 2224 173 64 57 chrY 1582605 1583187 -14319368 - L1_Mur3 LINE L1 -3160 2720 2135 1 597 1327 253 107 71 chrY 1583195 1584348 -14318207 - L1_Mur3 LINE L1 -4371 1509 38 1 597 429 293 18 12 chrY 1584397 1584566 -14317989 + Lx9 LINE L1 7302 7471 -173 1 597 223 49 49 0 chrY 1585515 1585556 -14316999 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 1 597 1344 74 24 5 chrY 1585591 1585796 -14316759 + L1_Mm LINE L1 2322 2530 -3353 1 597 2466 45 42 0 chrY 1585797 1586108 -14316447 - L1Md_F2 LINE L1 -4 6578 6255 1 597 1299 85 0 5 chrY 1586111 1586301 -14316254 - L1_Mm LINE L1 -759 5124 4936 1 597 339 98 0 32 chrY 1586301 1586364 -14316191 + L1_Mur1 LINE L1 2525 2585 -3301 1 597 3256 66 0 0 chrY 1586359 1586798 -14315757 + L1Md_F2 LINE L1 5150 5588 -295 1 597 7672 63 5 0 chrY 1586800 1587773 -14314782 + L1Md_F2 LINE L1 5591 6568 -14 1 597 2422 151 9 104 chrY 1588052 1588629 -14313926 + C573_MM Other Other 1 522 0 1 597 1095 236 137 71 chrY 1589244 1589480 -14313075 + MTD LTR MaLR 1 222 -197 1 597 1331 175 170 27 chrY 1589480 1589815 -14312740 + ORR1C2 LTR MaLR 2 384 0 1 597 1095 236 137 71 chrY 1589815 1589971 -14312584 + MTD LTR MaLR 223 419 0 1 597 1514 234 86 8 chrY 1590098 1590481 -14312074 - MTC LTR MaLR 0 421 9 1 597 1280 196 68 89 chrY 1590501 1590837 -14311718 + ORR1B1 LTR MaLR 66 394 0 1 597 551 15 15 0 chrY 1591529 1591597 -14310958 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 597 622 298 31 16 chrY 1591877 1592071 -14310484 + B3A SINE B2 1 197 -1 1 597 894 153 7 0 chrY 1593673 1593817 -14308738 + B1_Mm SINE Alu 1 145 -2 1 597 196 85 42 21 chrY 1593827 1593875 -14308680 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 1 597 725 188 0 89 chrY 1593890 1594048 -14308507 + B1_Mur4 SINE Alu 6 149 -1 1 597 549 0 0 0 chrY 1594236 1594297 -14308258 + (TAA)n Simple_repeat Simple_repeat 3 63 0 1 597 204 138 15 30 chrY 1595121 1595188 -14307367 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 1 597 537 298 69 35 chrY 1595776 1595950 -14306605 - MTD LTR MaLR -227 192 13 1 597 229 307 33 56 chrY 1595989 1596203 -14306352 + L1M1 LINE L1 5695 5903 -397 1 597 309 307 109 68 chrY 1596883 1597208 -14305347 + MLT1A0 LTR MaLR 9 340 -25 1 597 729 245 77 5 chrY 1597723 1597932 -14304623 + URR1A DNA MER1_type 2 225 -1 1 597 27 0 0 0 chrY 1598279 1598306 -14304249 + AT_rich Low_complexity Low_complexity 1 27 0 1 597 234 236 127 0 chrY 1598326 1598381 -14304174 - B1_Mur4 SINE Alu -60 90 29 1 597 1606 192 149 38 chrY 1598807 1599305 -14303250 + RMER16-int LTR ERVK 255 807 -4599 1 597 439 235 25 0 chrY 1599323 1599442 -14303113 + RMER16-int LTR ERVK 939 1060 -5077 1 597 254 298 36 0 chrY 1599455 1599539 -14303016 + ETnERV2-int LTR ERVK 2454 2540 -4866 1 597 624 91 0 0 chrY 1599539 1599627 -14302928 + (T)n Simple_repeat Simple_repeat 1 88 0 1 597 644 226 34 0 chrY 1599668 1599814 -14302741 + ETnERV2-int LTR ERVK 2603 2753 -4653 1 597 715 178 29 38 chrY 1599829 1600039 -14302516 + ETnERV2-int LTR ERVK 2928 3135 -4271 1 597 7222 158 44 1 chrY 1600049 1601350 -14301205 + ETnERV2-int LTR ERVK 3324 4679 -2727 1 597 2543 95 24 5 chrY 1601377 1601758 -14300797 + ETnERV2-int LTR ERVK 5370 5757 -1649 1 597 4829 173 86 91 chrY 1601745 1603161 -14299394 + RLTR45-int LTR ERVK 4663 6071 -1173 1 597 820 116 123 0 chrY 1603199 1603354 -14299201 + RLTR13D5 LTR ERVK 291 464 -559 1 597 431 322 13 0 chrY 1603840 1603989 -14298566 + RLTR45-int LTR ERVK 6496 6646 -760 1 597 219 356 57 41 chrY 1605717 1605840 -14296715 - B1_Mm SINE Alu 0 147 23 1 597 268 248 13 0 chrY 1607148 1607297 -14295258 + CT-rich Low_complexity Low_complexity 2 152 0 1 597 189 74 0 0 chrY 1608073 1608100 -14294455 + (T)n Simple_repeat Simple_repeat 1 27 0 1 597 711 122 8 0 chrY 1608494 1608617 -14293938 - MusHAL1 LINE L1 -2090 622 499 1 597 1809 179 56 13 chrY 1608624 1609015 -14293540 - L1VL2 LINE L1 -5853 482 75 1 597 556 246 30 38 chrY 1609192 1609323 -14293232 + B1_Mur4 SINE Alu 1 130 -20 1 597 180 0 0 0 chrY 1609997 1610017 -14292538 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 597 200 299 61 20 chrY 1610700 1610799 -14291756 + L2 LINE L2 1926 2028 -1391 1 597 455 347 52 20 chrY 1610812 1610965 -14291590 - B4A SINE B4 -4 288 131 1 597 198 0 0 0 chrY 1611048 1611070 -14291485 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 597 603 27 0 0 chrY 1611070 1611143 -14291412 + (TGG)n Simple_repeat Simple_repeat 1 73 0 1 597 276 290 194 95 chrY 1611251 1611483 -14291072 + L2 LINE L2 2047 2301 -1118 1 597 3796 181 19 20 chrY 1611487 1612280 -14290275 + YREP_Mm Unknown Unknown 986 1777 -35 1 597 21 95 0 0 chrY 1612514 1612577 -14289978 + AT_rich Low_complexity Low_complexity 1 63 0 1 597 7768 49 3 0 chrY 1612606 1613953 -14288602 - L1Md_F2 LINE L1 -2 6580 5231 1 597 10485 131 6 26 chrY 1614519 1615903 -14286652 + L1Md_F2 LINE L1 609 1968 -3915 1 597 239 0 0 31 chrY 1615903 1615935 -14286620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 597 10485 96 8 15 chrY 1615935 1616861 -14285694 + L1Md_F2 LINE L1 1969 2881 -3002 1 597 2688 31 28 3 chrY 1616861 1617180 -14285375 + IAPLTR2b LTR ERVK 1 327 0 1 597 5131 97 71 53 chrY 1617181 1618245 -14284310 + IAPEz-int LTR ERVK 9 1007 -5474 1 597 12635 56 14 2 chrY 1618249 1619931 -14282624 + IAPEz-int LTR ERVK 4779 6479 -2 1 597 2664 47 22 3 chrY 1619933 1620254 -14282301 + IAPLTR2b LTR ERVK 1 327 0 1 597 16315 87 34 47 chrY 1620254 1623000 -14279555 + L1Md_F2 LINE L1 2876 5586 -297 1 597 7425 78 5 4 chrY 1623001 1623995 -14278560 + L1Md_F2 LINE L1 5588 6582 0 1 597 212 103 51 0 chrY 1624199 1624238 -14278317 + (TATG)n Simple_repeat Simple_repeat 3 43 0 1 597 621 262 7 0 chrY 1624661 1624802 -14277753 + B1_Mur2 SINE Alu 1 142 -7 1 597 825 252 20 20 chrY 1624838 1625040 -14277515 + B3 SINE B2 5 206 -10 1 597 26 0 0 0 chrY 1625436 1625462 -14277093 + AT_rich Low_complexity Low_complexity 1 26 0 1 597 768 283 0 5 chrY 1625469 1625675 -14276880 + B3 SINE B2 1 205 -11 1 597 399 281 66 0 chrY 1625732 1625853 -14276702 + B1F SINE Alu 20 148 -1 1 597 751 281 20 0 chrY 1626006 1626205 -14276350 + B3 SINE B2 9 211 -5 1 597 345 24 0 0 chrY 1626308 1626350 -14276205 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 597 3563 18 0 0 chrY 1626350 1626746 -14275809 + MTA_Mm LTR MaLR 1 396 0 1 597 542 315 89 52 chrY 1626907 1627178 -14275377 + B4A SINE B4 12 292 0 1 597 8724 221 134 41 chrY 1627299 1631506 -14271049 + L1VL2 LINE L1 308 4750 -1127 1 597 4641 170 19 2 chrY 1631507 1632343 -14270212 + Lx LINE L1 5787 6636 -18 1 597 192 77 0 0 chrY 1632351 1632377 -14270178 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 597 21 0 0 0 chrY 1632378 1632399 -14270156 + AT_rich Low_complexity Low_complexity 1 21 0 1 597 25 83 0 0 chrY 1632467 1632527 -14270028 + AT_rich Low_complexity Low_complexity 1 60 0 1 597 958 274 161 58 chrY 1633152 1633374 -14269181 + MTD LTR MaLR 1 224 -195 1 597 1291 182 155 35 chrY 1633374 1633550 -14269005 + ORR1C2 LTR MaLR 3 191 -193 1 597 693 0 0 0 chrY 1633550 1633627 -14268928 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 597 1291 182 155 35 chrY 1633627 1633791 -14268764 + ORR1C2 LTR MaLR 192 384 0 1 597 958 274 161 58 chrY 1633791 1633948 -14268607 + MTD LTR MaLR 225 419 0 1 597 1698 217 80 13 chrY 1634075 1634462 -14268093 - MTC LTR MaLR 0 421 9 1 597 1342 208 17 98 chrY 1634462 1634820 -14267735 + ORR1A4 LTR MaLR 1 329 0 1 597 459 0 0 0 chrY 1635511 1635562 -14266993 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 597 479 298 36 20 chrY 1635842 1636037 -14266518 + B3A SINE B2 1 198 0 1 597 732 193 0 7 chrY 1637642 1637788 -14264767 + B1_Mm SINE Alu 1 145 -2 1 597 304 59 43 29 chrY 1637789 1637859 -14264696 + (CAAAA)n Simple_repeat Simple_repeat 4 74 0 1 597 492 269 92 0 chrY 1637883 1638013 -14264542 + B1_Mur4 SINE Alu 9 150 0 1 597 222 228 0 17 chrY 1638015 1638073 -14264482 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 1 597 216 188 0 0 chrY 1639073 1639121 -14263434 + T-rich Low_complexity Low_complexity 1 48 0 1 597 1228 126 58 11 chrY 1639129 1639409 -14263146 - IAPLTR4 LTR ERVK -10 316 1 1 597 22 0 0 0 chrY 1639409 1639431 -14263124 + AT_rich Low_complexity Low_complexity 1 22 0 1 597 517 284 74 34 chrY 1640023 1640198 -14262357 - MTD LTR MaLR -228 191 10 1 597 961 105 0 13 chrY 1640303 1640524 -14262031 + (GA)n Simple_repeat Simple_repeat 1 218 0 1 597 784 229 91 14 chrY 1641948 1642156 -14260399 + URR1A DNA MER1_type 2 225 -1 1 597 612 268 0 0 chrY 1642648 1642771 -14259784 + B3 SINE B2 1 123 -93 1 597 564 29 0 0 chrY 1642772 1642842 -14259713 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 597 322 282 82 0 chrY 1642894 1642979 -14259576 + B1_Mur3 SINE Alu 1 92 -57 1 597 285 51 0 0 chrY 1643208 1643247 -14259308 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 597 206 118 0 0 chrY 1643275 1643309 -14259246 + (T)n Simple_repeat Simple_repeat 1 34 0 1 597 210 91 0 0 chrY 1643849 1643882 -14258673 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 1 597 207 0 0 0 chrY 1644195 1644218 -14258337 + (A)n Simple_repeat Simple_repeat 1 23 0 1 597 229 330 22 0 chrY 1644240 1644331 -14258224 - Lx8 LINE L1 -208 7265 7173 1 597 1424 69 0 0 chrY 1644378 1644566 -14257989 + L1_Mm LINE L1 5425 5612 -271 1 597 9721 43 4 2 chrY 1644576 1645850 -14256705 - L1_Mm LINE L1 -454 5429 4153 1 597 346 65 0 0 chrY 1646035 1646081 -14256474 - RLTR44-int LTR ERVK -2509 303 258 1 597 1787 184 28 0 chrY 1646121 1646479 -14256076 - RLTR44B LTR ERVK 0 405 1 1 597 2495 143 30 16 chrY 1647002 1647442 -14255113 + RLTR13D5 LTR ERVK 578 1023 0 2 597 513 0 0 0 chrY 1647667 1647724 -14254831 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 597 337 331 62 41 chrY 1648819 1648964 -14253591 - B4A SINE B4 -86 206 59 2 597 252 172 62 0 chrY 1649006 1649070 -14253485 + L1_Mur1 LINE L1 5363 5430 -456 2 597 27 0 0 0 chrY 1649090 1649117 -14253438 + AT_rich Low_complexity Low_complexity 1 27 0 2 597 1398 244 55 33 chrY 1649464 1649619 -14252936 - Lx3A LINE L1 -36 6945 6778 2 597 180 0 0 0 chrY 1649619 1649639 -14252916 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 597 1398 244 55 33 chrY 1649639 1649902 -14252653 - Lx3A LINE L1 -204 6777 6518 2 597 360 0 0 0 chrY 1650045 1650085 -14252470 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 597 215 209 0 0 chrY 1650396 1650439 -14252116 + (GTTTG)n Simple_repeat Simple_repeat 3 45 0 2 597 25 0 0 0 chrY 1650535 1650560 -14251995 + AT_rich Low_complexity Low_complexity 1 25 0 2 597 1065 217 24 0 chrY 1650615 1650864 -14251691 + Lx3_Mus LINE L1 6548 6802 -207 2 597 1385 183 10 9 chrY 1650856 1651152 -14251403 - Lx3A LINE L1 -674 6299 5999 2 597 370 127 0 0 chrY 1651615 1651678 -14250877 + L1_Mus1 LINE L1 6436 6498 -69 2 597 3084 131 23 8 chrY 1651667 1652584 -14249971 + L1VL2 LINE L1 595 1525 -2090 2 597 208 241 17 0 chrY 1653784 1653842 -14248713 + GA-rich Low_complexity Low_complexity 2 60 0 2 597 440 118 24 0 chrY 1653843 1653928 -14248627 + (CAGA)n Simple_repeat Simple_repeat 4 90 0 2 597 213 39 0 0 chrY 1653973 1653999 -14248556 + (GGGAGA)n Simple_repeat Simple_repeat 3 28 0 2 597 217 319 39 78 chrY 1656695 1656824 -14245731 - B3 SINE B2 0 216 93 2 597 287 216 0 8 chrY 1656839 1656956 -14245599 + GA-rich Low_complexity Low_complexity 1 116 0 2 597 30842 63 1 89 chrY 1657435 1658778 -14243777 - L1Md_F2 LINE L1 -1 6581 5240 2 597 259 228 200 38 chrY 1658778 1658883 -14243672 + RLTR6_Mm LTR ERV1 1 122 -532 2 597 2018 118 261 27 chrY 1658885 1659329 -14243226 + RLTR6_Mm LTR ERV1 37 584 -70 2 597 30842 63 1 89 chrY 1659329 1663365 -14239190 - L1Md_F2 LINE L1 -1 5239 1203 2 597 6748 58 1 18 chrY 1663331 1664266 -14238289 - L1Md_Gf LINE L1 -5380 1142 224 2 597 2532 120 4 122 chrY 1664265 1664797 -14237758 - L1Md_F LINE L1 -5661 858 390 2 597 500 335 33 33 chrY 1664935 1665148 -14237407 + B3 SINE B2 1 213 -3 2 597 790 216 121 0 chrY 1665409 1665599 -14236956 + RMER4A LTR ERVK 254 466 0 2 597 500 231 41 0 chrY 1665599 1665720 -14236835 - RMER1C Other Other -219 1123 998 2 597 195 114 0 0 chrY 1665720 1665755 -14236800 + (T)n Simple_repeat Simple_repeat 1 35 0 2 597 543 56 0 0 chrY 1665757 1665828 -14236727 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 597 212 59 0 29 chrY 1665925 1665960 -14236595 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 597 1474 167 171 0 chrY 1666010 1666274 -14236281 - RLTR10E LTR ERVK 0 311 3 2 597 21321 99 9 5 chrY 1666276 1669732 -14232823 - MMERVK10C-int LTR ERVK 0 7680 4183 2 597 237 211 0 0 chrY 1669747 1669804 -14232751 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 597 1525 105 0 9 chrY 1670068 1670299 -14232256 - L1Md_F2 LINE L1 0 6582 6354 2 597 1541 64 0 0 chrY 1670312 1670514 -14232041 + L1Md_F2 LINE L1 6136 6337 -245 2 597 298 295 10 10 chrY 1671999 1672095 -14230460 + MTD LTR MaLR 16 111 -310 2 597 460 125 23 0 chrY 1672181 1672269 -14230286 + L1_Mur1 LINE L1 2569 2658 -3228 2 597 310 227 0 0 chrY 1672259 1672334 -14230221 + Lx2 LINE L1 5864 5938 -1059 2 597 796 271 12 68 chrY 1672372 1672696 -14229859 - Lx7 LINE L1 -702 6994 6689 2 597 303 320 34 20 chrY 1672716 1672920 -14229635 - Lx7 LINE L1 -1642 6054 5848 2 597 314 312 9 9 chrY 1672920 1673030 -14229525 + MTD LTR MaLR 102 211 -210 2 597 618 305 10 0 chrY 1673033 1673230 -14229325 + B3 SINE B2 1 199 -17 2 597 21 82 0 0 chrY 1673233 1673282 -14229273 + AT_rich Low_complexity Low_complexity 1 49 0 2 597 540 239 110 26 chrY 1673282 1673437 -14229118 + MTD LTR MaLR 192 359 -60 2 597 251 201 44 17 chrY 1673442 1673543 -14229012 + Lx2 LINE L1 6898 6979 -18 2 597 560 154 28 35 chrY 1673973 1674114 -14228441 + Lx LINE L1 6508 6647 -7 2 597 1500 150 4 4 chrY 1674111 1674378 -14228177 + L1_Mus4 LINE L1 6362 6628 -8 2 597 1665 69 0 0 chrY 1674405 1674623 -14227932 + L1Md_T LINE L1 6365 6582 0 2 597 900 168 0 6 chrY 1674739 1674907 -14227648 + CYRA11_Mm Unknown Y-chromosome 3 169 -448 2 597 692 233 61 19 chrY 1674907 1675121 -14227434 - URR1A DNA MER1_type -1 225 3 2 597 1407 133 0 13 chrY 1675121 1675357 -14227198 + CYRA11_Mm Unknown Y-chromosome 385 617 0 2 597 239 318 53 30 chrY 1675273 1675406 -14227149 + MLT1G LTR MaLR 58 193 -398 2 597 590 189 223 22 chrY 1677441 1677625 -14224930 - RMER1C Other Other 0 1342 1122 2 597 245 219 40 45 chrY 1677949 1678126 -14224429 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 2 597 233 208 39 39 chrY 1678173 1678303 -14224252 + (TTA)n Simple_repeat Simple_repeat 3 132 0 2 597 863 273 93 28 chrY 1678330 1678824 -14223731 - L1M2 LINE L1 -2105 4038 3513 2 597 451 132 22 0 chrY 1678824 1678915 -14223640 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 597 448 139 56 0 chrY 1678933 1679077 -14223478 + (TA)n Simple_repeat Simple_repeat 2 153 0 2 597 222 105 0 0 chrY 1679393 1679431 -14223124 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 2 597 523 252 0 0 chrY 1679482 1679593 -14222962 - B1_Mur1 SINE Alu -13 136 26 2 597 225 0 0 0 chrY 1680045 1680070 -14222485 + (TGG)n Simple_repeat Simple_repeat 3 27 0 2 597 264 280 0 13 chrY 1681685 1681761 -14220794 + GA-rich Low_complexity Low_complexity 3 77 0 2 597 180 354 40 20 chrY 1682018 1682119 -14220436 + MIR SINE MIR 125 227 -35 2 597 299 25 25 0 chrY 1682500 1682540 -14220015 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 597 724 256 13 0 chrY 1682548 1682704 -14219851 - B3 SINE B2 -54 162 5 2 597 264 172 33 33 chrY 1682831 1682891 -14219664 - MER33 DNA MER1_type -264 60 1 2 597 19963 86 3 5 chrY 1685752 1689426 -14213129 - L1Md_F2 LINE L1 -14 6568 2906 2 597 1193 131 0 0 chrY 1689430 1689613 -14212942 - L1Md_F2 LINE L1 -14 6568 6386 2 597 1620 5 0 0 chrY 1689606 1689792 -14212763 + L1Md_A LINE L1 6397 6582 0 2 597 630 0 0 0 chrY 1690651 1690721 -14211834 + (TAAA)n Simple_repeat Simple_repeat 2 71 0 2 597 30078 99 6 6 chrY 1690721 1695970 -14206585 - L1Md_F2 LINE L1 -206 5677 217 2 597 231 152 0 0 chrY 1696257 1696303 -14206252 + CT-rich Low_complexity Low_complexity 1 46 0 2 597 495 0 0 0 chrY 1696320 1696375 -14206180 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 597 207 219 0 0 chrY 1697099 1697140 -14205415 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2 597 3025 74 5 0 chrY 1698449 1698839 -14203716 - MTA_Mm LTR MaLR -2 394 3 2 597 192 200 0 0 chrY 1698925 1698995 -14203560 + T-rich Low_complexity Low_complexity 1 70 0 2 597 27 49 0 0 chrY 1700825 1700866 -14201689 + AT_rich Low_complexity Low_complexity 1 41 0 2 597 514 100 0 0 chrY 1700912 1700992 -14201563 + MusHAL1 LINE L1 1362 1441 -1271 2 597 412 173 0 0 chrY 1700990 1701065 -14201490 + Lx2 LINE L1 5864 5938 -1059 2 597 547 254 63 31 chrY 1701081 1701272 -14201283 - Lx7 LINE L1 -677 7019 6823 2 597 409 227 8 16 chrY 1701283 1701404 -14201151 + (TATATG)n Simple_repeat Simple_repeat 4 123 0 2 597 264 286 24 56 chrY 1701404 1701530 -14201025 - Lx7 LINE L1 -885 6811 6690 2 597 323 308 31 25 chrY 1701592 1701755 -14200800 - Lx7 LINE L1 -1685 6011 5848 2 597 383 336 0 0 chrY 1701755 1701865 -14200690 + MTD LTR MaLR 102 211 -208 2 597 501 185 11 11 chrY 1701868 1701961 -14200594 + B3 SINE B2 1 93 -123 2 597 204 125 0 0 chrY 1701961 1701993 -14200562 + (TATG)n Simple_repeat Simple_repeat 3 34 0 2 597 330 26 0 0 chrY 1701993 1702031 -14200524 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 597 21 71 0 0 chrY 1702031 1702073 -14200482 + AT_rich Low_complexity Low_complexity 1 42 0 2 597 1109 233 113 0 chrY 1703162 1703480 -14199075 + Lx3B LINE L1 6620 6973 0 2 597 185 214 0 35 chrY 1703633 1703691 -14198864 + CT-rich Low_complexity Low_complexity 2 57 0 2 597 523 252 27 0 chrY 1703694 1703805 -14198750 - B1_Mur4 SINE Alu -8 142 29 2 598 994 116 0 7 chrY 1704503 1704650 -14197905 + B1_Mus1 SINE Alu 3 148 0 2 598 629 292 67 5 chrY 1704711 1704904 -14197651 - B3 SINE B2 -11 205 1 2 598 554 304 81 87 chrY 1705517 1705658 -14196897 - MER2 DNA MER2_type -5 340 199 2 598 443 314 8 0 chrY 1705658 1705776 -14196779 - PB1 SINE Alu -8 119 1 2 598 554 304 81 87 chrY 1705776 1705966 -14196589 - MER2 DNA MER2_type -147 198 12 2 598 424 269 54 36 chrY 1706869 1706981 -14195574 + B1F SINE Alu 29 142 -7 2 598 4801 135 7 16 chrY 1707164 1708043 -14194512 - YREP_Mm Unknown Unknown -824 988 118 2 598 456 278 159 21 chrY 1708266 1708505 -14194050 + RLTR10A LTR ERVK 140 411 0 2 598 580 156 30 45 chrY 1708574 1708708 -14193847 - YREP_Mm Unknown Unknown -1680 132 1 2 598 288 399 58 39 chrY 1709333 1709591 -14192964 + LTR16E1 LTR ERVL 217 479 -59 2 598 30 27 0 0 chrY 1710258 1710295 -14192260 + AT_rich Low_complexity Low_complexity 1 37 0 2 598 200 85 0 92 chrY 1710533 1710598 -14191957 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 598 227 326 95 0 chrY 1710612 1710707 -14191848 - B1F1 SINE Alu -45 104 1 2 598 683 300 0 0 chrY 1710763 1710923 -14191632 - B3 SINE B2 -56 160 1 2 598 913 216 77 5 chrY 1711391 1711600 -14190955 - URR1A DNA MER1_type -1 225 2 2 598 241 250 21 11 chrY 1712961 1713054 -14189501 - L1M2 LINE L1 -503 5788 5695 2 598 525 313 13 20 chrY 1713103 1713256 -14189299 + MTD LTR MaLR 32 183 -236 2 598 200 23 43 64 chrY 1713863 1713910 -14188645 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2 598 457 238 141 27 chrY 1714499 1714656 -14187899 - ORR1B1 LTR MaLR -171 223 1 2 598 948 234 54 4 chrY 1714656 1714896 -14187659 + MTB_Mm LTR MaLR 9 260 -147 2 598 1266 200 0 0 chrY 1715415 1715670 -14186885 + Lx3_Mus LINE L1 6548 6802 -207 3 598 1449 171 0 11 chrY 1715668 1715952 -14186603 - Lx3B LINE L1 -682 6291 6011 3 598 659 167 0 21 chrY 1716435 1716576 -14185979 + L1Md_F2 LINE L1 6442 6579 -3 3 598 419 0 0 19 chrY 1716659 1716711 -14185844 + (TTTTG)n Simple_repeat Simple_repeat 4 54 0 3 598 556 221 39 0 chrY 1716722 1716826 -14185729 - B1_Mur4 SINE Alu -42 108 1 3 598 2981 163 28 11 chrY 1717007 1717577 -14184978 + L1VL2 LINE L1 74 653 -5682 3 598 23 68 0 0 chrY 1717680 1717724 -14184831 + AT_rich Low_complexity Low_complexity 1 44 0 3 598 432 138 35 0 chrY 1717770 1717857 -14184698 + L1_Mur1 LINE L1 2569 2658 -3228 3 598 470 120 0 0 chrY 1717847 1717922 -14184633 + Lx2 LINE L1 5864 5938 -1059 3 598 699 293 56 28 chrY 1717938 1718258 -14184297 - Lx7 LINE L1 -678 7018 6690 3 598 342 285 32 26 chrY 1718321 1718476 -14184079 - Lx7 LINE L1 -1685 6011 5856 3 598 433 312 102 23 chrY 1718476 1718604 -14183951 + MTD LTR MaLR 61 211 -208 3 598 768 257 16 5 chrY 1718604 1718788 -14183767 + B3 SINE B2 10 195 -21 3 598 198 0 0 0 chrY 1718797 1718819 -14183736 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 598 958 211 218 0 chrY 1719944 1720229 -14182326 + Lx3B LINE L1 6619 6965 -8 3 598 288 0 0 0 chrY 1720229 1720261 -14182294 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 598 200 350 0 0 chrY 1720391 1720451 -14182104 + CT-rich Low_complexity Low_complexity 2 61 0 3 598 585 241 30 2 chrY 1720456 1720587 -14181968 - B1_Mur4 SINE Alu -8 142 6 3 598 1444 111 46 14 chrY 1721260 1721479 -14181076 + L1Md_F2 LINE L1 6344 6569 -13 3 598 226 237 0 0 chrY 1721484 1721543 -14181012 + A-rich Low_complexity Low_complexity 1 59 0 3 598 705 258 62 5 chrY 1721682 1721877 -14180678 - B3 SINE B2 -10 206 1 3 598 183 80 0 0 chrY 1722022 1722047 -14180508 + (GAA)n Simple_repeat Simple_repeat 2 26 0 3 598 308 295 71 32 chrY 1722497 1722623 -14179932 - MER2 DNA MER2_type -5 340 210 3 598 445 262 19 19 chrY 1722636 1722741 -14179814 - PB1 SINE Alu -8 119 15 3 598 523 289 96 10 chrY 1722746 1722840 -14179715 - MER2 DNA MER2_type -119 226 129 3 598 2744 131 9 41 chrY 1722840 1723302 -14179253 - RLTR44B LTR ERVK 0 449 3 3 598 523 289 96 10 chrY 1723302 1723406 -14179149 - MER2 DNA MER2_type -217 128 11 3 598 268 330 10 10 chrY 1723972 1724073 -14178482 + Lx8 LINE L1 7165 7265 -208 3 598 370 261 68 59 chrY 1724312 1724430 -14178125 + B1F SINE Alu 29 147 -2 3 598 5174 121 7 8 chrY 1724607 1725477 -14177078 - YREP_Mm Unknown Unknown -824 988 120 3 598 572 158 38 45 chrY 1725713 1725846 -14176709 - YREP_Mm Unknown Unknown -1680 132 1 3 598 410 356 133 41 chrY 1726333 1726746 -14175809 + LTR16E1 LTR ERVL 61 511 -27 3 598 430 88 39 19 chrY 1727482 1727586 -14174969 + (CAAAAA)n Simple_repeat Simple_repeat 2 107 0 3 598 203 0 37 0 chrY 1727875 1727902 -14174653 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 598 213 222 0 0 chrY 1728163 1728217 -14174338 + A-rich Low_complexity Low_complexity 1 54 0 3 598 235 98 19 38 chrY 1728295 1728348 -14174207 + A-rich Low_complexity Low_complexity 3 54 0 3 598 462 129 0 0 chrY 1728545 1728630 -14173925 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 598 234 91 0 0 chrY 1728732 1728765 -14173790 + (A)n Simple_repeat Simple_repeat 1 33 0 3 598 224 163 0 20 chrY 1728833 1728883 -14173672 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 3 598 305 318 82 0 chrY 1728903 1728988 -14173567 - B1_Mur3 SINE Alu -57 92 1 3 598 567 0 0 0 chrY 1729045 1729108 -14173447 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 598 677 241 38 0 chrY 1729109 1729242 -14173313 - B3 SINE B2 -78 138 1 3 598 349 352 65 37 chrY 1729242 1729596 -14172959 - L1MDb LINE L1 -5143 1266 903 3 598 766 240 77 5 chrY 1729733 1729942 -14172613 - URR1A DNA MER1_type -1 225 2 3 598 6765 78 10 27 chrY 1730184 1731156 -14171399 + L1Md_F2 LINE L1 5616 6571 -11 3 598 1859 175 6 6 chrY 1731673 1731984 -14170571 + RLTR10E LTR ERVK 1 311 0 3 598 585 117 43 0 chrY 1731985 1732079 -14170476 + MMERVK10C-int LTR ERVK 2 99 -7482 3 598 238 291 0 0 chrY 1732079 1732134 -14170421 + RLTR27 LTR ERVK 227 281 -28 3 598 40916 99 9 5 chrY 1732134 1738067 -14164488 + MMERVK10C-int LTR ERVK 231 6185 -1396 3 598 1197 94 33 0 chrY 1738067 1738247 -14164308 - L1Md_F3 LINE L1 -2 6582 6397 3 598 30314 73 6 2 chrY 1738247 1742958 -14159597 + L1Md_F3 LINE L1 1478 6213 -371 3 598 322 231 77 0 chrY 1742958 1743036 -14159519 + MTD LTR MaLR 276 359 -60 3 598 279 192 35 7 chrY 1743041 1743140 -14159415 + Lx2 LINE L1 6898 6995 -5 3 598 1187 171 49 12 chrY 1743552 1743566 -14158989 + L1_Mus4 LINE L1 6353 6366 -270 3 598 700 154 0 34 chrY 1743566 1743714 -14158841 + Lx LINE L1 6508 6650 -4 3 598 1187 171 49 12 chrY 1743714 1743942 -14158613 + L1_Mus4 LINE L1 6367 6604 -32 3 598 878 26 0 9 chrY 1743942 1744056 -14158499 + (TAAAA)n Simple_repeat Simple_repeat 3 115 0 3 598 838 178 0 7 chrY 1744105 1744242 -14158313 + B1_Mus2 SINE Alu 1 137 -10 3 598 513 0 0 0 chrY 1744242 1744299 -14158256 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 3 598 990 142 0 6 chrY 1744391 1744561 -14157994 + CYRA11_Mm Unknown Y-chromosome 3 171 -446 3 598 805 205 77 10 chrY 1744561 1744768 -14157787 - URR1A DNA MER1_type -1 225 5 3 598 1168 151 59 14 chrY 1744771 1744993 -14157562 + CYRA11_Mm Unknown Y-chromosome 386 617 0 3 598 390 173 0 0 chrY 1745234 1745338 -14157217 + CT-rich Low_complexity Low_complexity 1 104 0 3 598 906 116 0 0 chrY 1745338 1745467 -14157088 - B1_Mus1 SINE Alu -1 147 19 3 598 1604 239 69 87 chrY 1745549 1746226 -14156329 - Lx7 LINE L1 0 7696 7032 3 598 482 325 0 67 chrY 1746429 1746594 -14155961 + RSINE1 SINE B4 11 164 -1 3 598 27 0 0 0 chrY 1746623 1746650 -14155905 + AT_rich Low_complexity Low_complexity 1 27 0 3 598 24 0 0 0 chrY 1747154 1747178 -14155377 + AT_rich Low_complexity Low_complexity 1 24 0 3 598 21508 80 2 4 chrY 1747194 1751047 -14151508 - L1Md_F2 LINE L1 0 6582 2740 3 598 376 304 52 52 chrY 1751049 1751243 -14151312 + Lx5 LINE L1 6848 7041 -9 3 598 243 0 0 0 chrY 1751364 1751391 -14151164 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 598 576 0 0 0 chrY 1751391 1751454 -14151101 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 598 430 191 9 0 chrY 1752889 1753004 -14149551 - Lx9 LINE L1 -1 7643 7528 3 598 328 266 198 19 chrY 1753014 1753221 -14149334 - Lx9 LINE L1 -154 7490 7247 3 598 7252 40 16 3 chrY 1753215 1754147 -14148408 - L1Md_F2 LINE L1 0 6582 5639 3 598 639 197 76 0 chrY 1754368 1754500 -14148055 + B1_Mus1 SINE Alu 6 147 -1 3 598 308 255 28 38 chrY 1754673 1754779 -14147776 - MurSatRep1 Unknown Unknown -1392 745 641 3 598 1261 165 56 3 chrY 1755600 1755886 -14146669 + MusHAL1 LINE L1 623 923 -1789 3 598 296 294 35 0 chrY 1756029 1756114 -14146441 - PB1D10 SINE Alu -2 115 28 3 598 2307 143 58 0 chrY 1756743 1757142 -14145413 - L1_Mus2 LINE L1 0 6566 6145 3 598 185 67 0 130 chrY 1757199 1757268 -14145287 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 3 598 26 64 0 0 chrY 1757426 1757473 -14145082 + AT_rich Low_complexity Low_complexity 1 47 0 3 598 21 82 0 0 chrY 1757619 1757668 -14144887 + AT_rich Low_complexity Low_complexity 1 49 0 3 598 657 226 10 2 chrY 1757671 1757810 -14144745 + B2_Mm2 SINE B2 2 149 -67 3 598 441 0 0 0 chrY 1757867 1757916 -14144639 + (TTA)n Simple_repeat Simple_repeat 2 50 0 3 598 285 227 0 0 chrY 1757925 1758000 -14144555 - Lx9 LINE L1 -36 7608 7534 3 598 1056 72 7 0 chrY 1758124 1758262 -14144293 + B1_Mus1 SINE Alu 4 142 -6 3 598 274 207 118 35 chrY 1758283 1758368 -14144187 + B3 SINE B2 28 119 -97 3 598 558 0 0 0 chrY 1758745 1758807 -14143748 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 3 598 3353 134 101 2 chrY 1760986 1761563 -14140992 - L1_Mus3 LINE L1 -1 6637 6004 3 598 4309 56 2 2 chrY 1761570 1762132 -14140423 + L1_Mm LINE L1 5024 5586 -297 3 598 7331 67 23 1 chrY 1762132 1763107 -14139448 + L1Md_F2 LINE L1 5587 6582 0 3 598 21027 172 12 18 chrY 1763107 1766790 -14135765 - L1_Mus2 LINE L1 -571 5995 2365 3 598 2784 61 6 0 chrY 1766790 1767134 -14135421 - ORR1A1 LTR MaLR 0 346 1 3 598 21027 175 14 20 chrY 1767134 1768033 -14134522 - L1_Mus2 LINE L1 -3519 2364 1445 3 598 450 94 0 0 chrY 1768243 1768307 -14134248 + (T)n Simple_repeat Simple_repeat 1 64 0 3 598 361 306 0 18 chrY 1768337 1768447 -14134108 + ID_B1 SINE B4 102 209 -15 3 598 272 314 48 24 chrY 1768447 1768460 -14134095 + B1F SINE Alu 21 146 -3 3 598 28 29 0 0 chrY 1768702 1768737 -14133818 + AT_rich Low_complexity Low_complexity 1 35 0 3 598 261 172 15 30 chrY 1769086 1769152 -14133403 + A-rich Low_complexity Low_complexity 1 65 0 3 598 526 282 120 45 chrY 1769355 1769554 -14133001 + B4A SINE B4 1 229 -63 3 598 857 154 14 0 chrY 1769554 1769697 -14132858 + B1_Mus1 SINE Alu 4 148 0 3 598 526 282 120 45 chrY 1769697 1769764 -14132791 + B4A SINE B4 230 287 -5 3 598 762 335 5 5 chrY 1769989 1770202 -14132353 + B3 SINE B2 2 214 -2 3 598 24 0 0 0 chrY 1771258 1771282 -14131273 + AT_rich Low_complexity Low_complexity 1 24 0 3 598 207 133 0 0 chrY 1771560 1771605 -14130950 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 598 495 0 0 0 chrY 1771607 1771662 -14130893 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 598 3046 117 28 74 chrY 1771726 1772269 -14130286 + MURVY-LTR LTR ERV1 1 518 -1 3 598 3654 288 55 39 chrY 1772270 1773931 -14128624 + RLTR6-int LTR ERV1 1 1687 -3376 3 598 6642 310 42 52 chrY 1773917 1777962 -14124593 + RLTR6-int LTR ERV1 1921 5935 -1517 3 598 332 24 0 0 chrY 1778541 1778583 -14123972 + RLTR10B LTR ERVK 1 42 -250 3 598 1977 53 0 121 chrY 1778605 1778928 -14123627 + RLTR10B LTR ERVK 9 292 0 3 598 775 313 41 63 chrY 1778940 1779700 -14122855 + RLTR6-int LTR ERV1 6697 7439 -339 3 598 3524 75 148 1 chrY 1779702 1780498 -14122057 + L1Md_A LINE L1 208 1120 -5604 3 598 3411 126 9 0 chrY 1780491 1781064 -14121491 - L1_Mm LINE L1 -2693 3190 2613 4 598 1405 169 39 4 chrY 1781095 1781351 -14121204 - L1VL1 LINE L1 -6157 265 1 4 598 919 235 0 9 chrY 1782736 1782959 -14119596 - Lx2 LINE L1 -12 6985 6765 4 598 2605 224 10 3 chrY 1782952 1783547 -14119008 - Lx2 LINE L1 -356 6641 6043 4 598 270 232 0 28 chrY 1783542 1783613 -14118942 + L1M2 LINE L1 3793 3861 -2282 4 598 227 360 29 20 chrY 1783856 1783958 -14118597 + B1F2 SINE Alu 42 144 -5 4 598 939 143 16 82 chrY 1784643 1784887 -14117668 + MusHAL1 LINE L1 1855 2082 -630 4 598 21 82 0 0 chrY 1786122 1786171 -14116384 + AT_rich Low_complexity Low_complexity 1 49 0 4 598 287 314 0 0 chrY 1786255 1786325 -14116230 - B3A SINE B2 -80 118 49 4 598 1102 96 0 0 chrY 1787266 1787423 -14115132 + L1_Mus1 LINE L1 6406 6562 -5 4 598 207 0 0 0 chrY 1787423 1787446 -14115109 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4 598 1548 222 38 15 chrY 1789139 1789536 -14113019 + Lx3B LINE L1 6563 6968 -5 4 598 2179 216 2 2 chrY 1790280 1790721 -14111834 - Lx3A LINE L1 -5 6976 6536 4 598 292 240 38 23 chrY 1790976 1791108 -14111447 + Lx LINE L1 6516 6649 -5 4 598 360 187 40 17 chrY 1791328 1791502 -14111053 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 598 21 0 0 0 chrY 1791917 1791938 -14110617 + AT_rich Low_complexity Low_complexity 1 21 0 4 598 537 105 0 0 chrY 1792391 1792486 -14110069 + (GA)n Simple_repeat Simple_repeat 1 95 0 4 598 1525 257 39 0 chrY 1792630 1793046 -14109509 + Lx3A LINE L1 6514 6945 -36 4 598 21 0 0 0 chrY 1793402 1793423 -14109132 + AT_rich Low_complexity Low_complexity 1 21 0 4 598 226 214 18 0 chrY 1793443 1793499 -14109056 - L1_Mur1 LINE L1 -456 5430 5374 4 598 318 333 61 41 chrY 1793550 1793697 -14108858 + B4A SINE B4 57 206 -86 4 598 217 167 0 59 chrY 1794219 1794270 -14108285 + (CAGAGA)n Simple_repeat Simple_repeat 5 52 0 4 598 396 104 0 0 chrY 1794799 1794866 -14107689 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 598 5540 161 33 15 chrY 1795136 1796130 -14106425 - RLTR13D5 LTR ERVK -7 1016 5 4 598 702 0 0 0 chrY 1796141 1796219 -14106336 + (TC)n Simple_repeat Simple_repeat 2 79 0 4 598 336 24 0 0 chrY 1796219 1796259 -14106296 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 598 295 268 83 114 chrY 1796676 1797000 -14105555 - RLTR15 LTR ERVK -13 346 33 4 598 339 265 39 58 chrY 1797064 1797168 -14105387 - B3A SINE B2 0 198 97 4 598 705 34 0 0 chrY 1797742 1797830 -14104725 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 598 653 279 34 14 chrY 1797856 1798063 -14104492 + Lx8 LINE L1 7119 7329 -144 4 598 251 157 20 0 chrY 1798203 1798254 -14104301 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 4 598 801 56 0 0 chrY 1798292 1798399 -14104156 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 598 653 279 34 14 chrY 1798425 1798632 -14103923 + Lx8 LINE L1 7119 7329 -144 4 598 236 149 21 0 chrY 1798773 1798820 -14103735 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 598 963 48 0 0 chrY 1798858 1798983 -14103572 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 598 653 279 34 14 chrY 1799009 1799216 -14103339 + Lx8 LINE L1 7119 7329 -144 4 598 236 149 21 0 chrY 1799357 1799404 -14103151 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 598 951 34 0 0 chrY 1799442 1799561 -14102994 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 598 672 274 34 14 chrY 1799587 1799794 -14102761 + Lx8 LINE L1 7119 7329 -144 4 598 236 149 21 0 chrY 1799934 1799981 -14102574 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 598 468 62 0 0 chrY 1800019 1800083 -14102472 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 598 1613 176 58 68 chrY 1800166 1800538 -14102017 + ORR1B1 LTR MaLR 1 394 0 4 598 269 334 118 47 chrY 1801267 1801606 -14100949 + ORR1D2 LTR MaLR 3 365 -5 4 598 3393 39 0 130 chrY 1801734 1802235 -14100320 - RLTR10C LTR ERVK 0 436 1 4 598 3912 25 0 89 chrY 1802235 1802796 -14099759 - MMERVK10C-int LTR ERVK 0 7581 7071 4 598 403 58 0 0 chrY 1802798 1802850 -14099705 - L1_Mm LINE L1 -325 5558 5507 4 598 3791 53 0 2 chrY 1802850 1803322 -14099233 + L1Md_F2 LINE L1 6112 6582 0 4 598 258 219 16 0 chrY 1803322 1803333 -14099222 - L1MD LINE L1 -2460 5535 5524 4 598 180 152 0 0 chrY 1803850 1803883 -14098672 + A-rich Low_complexity Low_complexity 1 33 0 4 598 207 0 0 0 chrY 1803895 1803918 -14098637 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 598 21 36 0 0 chrY 1804160 1804188 -14098367 + AT_rich Low_complexity Low_complexity 1 28 0 4 598 2646 67 0 3 chrY 1804261 1804604 -14097951 - MTA_Mm LTR MaLR -54 342 1 4 598 6082 95 11 9 chrY 1804604 1805504 -14097051 - MTA_Mm-int LTR MaLR 0 1098 197 4 598 27 49 0 0 chrY 1805527 1805568 -14096987 + AT_rich Low_complexity Low_complexity 1 41 0 4 598 231 133 0 0 chrY 1805725 1805770 -14096785 + (A)n Simple_repeat Simple_repeat 1 45 0 4 598 222 208 0 77 chrY 1805898 1806002 -14096553 + A-rich Low_complexity Low_complexity 2 97 0 4 598 387 0 0 0 chrY 1806175 1806218 -14096337 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 598 295 23 22 22 chrY 1806581 1806626 -14095929 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 598 339 293 85 0 chrY 1806626 1806708 -14095847 - B1_Mur3 SINE Alu -60 89 1 4 598 549 0 0 0 chrY 1806765 1806826 -14095729 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 598 233 270 0 13 chrY 1807682 1807757 -14094798 + (TTTG)n Simple_repeat Simple_repeat 2 75 0 4 598 584 208 57 16 chrY 1807768 1807890 -14094665 - B1_Mur4 SINE Alu -18 132 6 4 598 225 65 0 0 chrY 1807915 1807946 -14094609 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 598 777 188 0 7 chrY 1807973 1808118 -14094437 - B1_Mm SINE Alu -2 145 2 4 598 478 274 25 8 chrY 1808948 1809066 -14093489 - B3A SINE B2 -78 120 1 4 598 459 300 0 0 chrY 1809363 1809473 -14093082 + MTD LTR MaLR 102 211 -208 4 598 630 257 7 0 chrY 1809483 1809619 -14092936 + B3 SINE B2 8 144 -72 4 598 21201 77 2 2 chrY 1809625 1812886 -14089669 - L1VL4 LINE L1 -1642 4241 981 4 598 2715 158 18 2 chrY 1812892 1813401 -14089154 + L1_Mus1 LINE L1 4598 5114 -769 4 598 31082 80 3 16 chrY 1813402 1818569 -14083986 + L1Md_F2 LINE L1 487 5585 -298 4 598 8006 45 4 4 chrY 1818570 1819554 -14083001 + L1Md_F2 LINE L1 5587 6570 -12 4 598 4386 128 13 18 chrY 1819556 1820796 -14081759 + L1_Mus1 LINE L1 5099 6324 -243 4 598 3896 176 12 88 chrY 1820795 1821643 -14080912 + L1_Mur2 LINE L1 4952 5731 -146 4 598 417 95 0 0 chrY 1821643 1821706 -14080849 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 598 3896 176 12 88 chrY 1821706 1821856 -14080699 + L1_Mur2 LINE L1 5732 5874 -3 4 598 747 0 0 0 chrY 1821929 1822012 -14080543 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 4 598 212 184 0 75 chrY 1823042 1823095 -14079460 + polypyrimidine Low_complexity Low_complexity 4 52 0 4 598 311 74 23 69 chrY 1823096 1823183 -14079372 + (TCTCTG)n Simple_repeat Simple_repeat 6 88 0 4 598 291 104 0 0 chrY 1823176 1823224 -14079331 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 598 1606 132 46 109 chrY 1823279 1823524 -14079031 - ORR1A2 LTR MaLR -1 326 94 4 598 517 111 0 0 chrY 1823524 1823614 -14078941 - L1_Mus3 LINE L1 0 6638 6549 4 598 1606 132 46 109 chrY 1823614 1823716 -14078839 - ORR1A2 LTR MaLR -234 93 1 4 598 549 0 0 0 chrY 1824268 1824329 -14078226 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 598 683 84 0 18 chrY 1825387 1825496 -14077059 + (CAAAA)n Simple_repeat Simple_repeat 2 108 0 4 598 1366 209 32 61 chrY 1825938 1826350 -14076205 - Lx5 LINE L1 -726 6324 5925 4 598 206 229 16 0 chrY 1826844 1826905 -14075650 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 598 1153 251 34 54 chrY 1828463 1829160 -14073395 + L1_Mur3 LINE L1 753 1429 -4451 4 598 247 307 116 34 chrY 1829345 1829578 -14072977 + RMER12 LTR ERVK 737 988 -334 4 598 798 192 0 0 chrY 1829579 1829740 -14072815 + (TA)n Simple_repeat Simple_repeat 2 162 0 4 598 458 37 0 0 chrY 1829740 1829794 -14072761 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 598 505 240 0 16 chrY 1829799 1829981 -14072574 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 598 277 282 12 0 chrY 1829981 1830066 -14072489 + (TATATG)n Simple_repeat Simple_repeat 6 91 0 4 598 431 247 6 0 chrY 1830071 1830229 -14072326 + (TA)n Simple_repeat Simple_repeat 2 160 0 4 598 259 241 8 49 chrY 1830504 1830626 -14071929 + (TAA)n Simple_repeat Simple_repeat 3 119 0 4 598 305 254 15 22 chrY 1830761 1830898 -14071657 + (TATAA)n Simple_repeat Simple_repeat 5 140 0 4 598 288 304 17 6 chrY 1831275 1831447 -14071108 + (TA)n Simple_repeat Simple_repeat 1 174 0 4 598 198 209 28 14 chrY 1831466 1831607 -14070948 + (TA)n Simple_repeat Simple_repeat 2 144 0 4 598 296 200 13 0 chrY 1831705 1831780 -14070775 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 598 474 349 7 20 chrY 1831896 1832045 -14070510 + B3 SINE B2 60 206 -10 4 598 182 166 68 31 chrY 1832237 1832399 -14070156 + (TATAA)n Simple_repeat Simple_repeat 2 169 0 4 598 34 55 0 0 chrY 1832475 1832530 -14070025 + AT_rich Low_complexity Low_complexity 1 55 0 4 598 241 92 28 97 chrY 1833321 1833393 -14069162 + ORR1D2 LTR MaLR 71 137 -237 4 598 365 262 0 15 chrY 1833398 1833530 -14069025 + (TATG)n Simple_repeat Simple_repeat 2 131 0 4 598 928 142 11 6 chrY 1833555 1833665 -14068890 + (TATG)n Simple_repeat Simple_repeat 3 114 0 4 598 2375 145 33 42 chrY 1833665 1834089 -14068466 - RLTR9B2 LTR ERVK 0 420 1 4 598 928 142 11 6 chrY 1834089 1834155 -14068400 + (TATG)n Simple_repeat Simple_repeat 1 66 0 4 598 308 288 7 0 chrY 1834139 1834285 -14068270 + (TA)n Simple_repeat Simple_repeat 2 148 0 4 598 277 250 0 0 chrY 1834285 1834353 -14068202 + ORR1D2 LTR MaLR 299 366 -4 4 598 39 68 0 0 chrY 1834379 1834453 -14068102 + AT_rich Low_complexity Low_complexity 1 74 0 4 598 444 147 0 0 chrY 1834460 1834535 -14068020 + (TTG)n Simple_repeat Simple_repeat 1 75 0 4 74 395 168 5 101 chrY 1834992 1835268 -14067287 + (TAA)n Simple_repeat Simple_repeat 1 249 0 5 599 389 249 5 38 chrY 1835157 1835341 -14067214 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 5 599 249 173 33 73 chrY 1835358 1835575 -14066980 + (TAA)n Simple_repeat Simple_repeat 1 208 0 5 599 2929 63 200 9 chrY 1835591 1836021 -14066534 - RLTR1B LTR ERV1 0 512 1 5 599 54422 22 1 0 chrY 1836021 1842500 -14060055 - MMERGLN-int LTR ERV1 0 7556 1072 5 599 6898 22 10 0 chrY 1842499 1843334 -14059221 - MMERGLN-int LTR ERV1 -6713 843 1 5 599 2929 63 200 9 chrY 1843334 1843764 -14058791 - RLTR1B LTR ERV1 0 512 1 5 599 186 128 0 0 chrY 1844079 1844118 -14058437 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 599 216 86 0 0 chrY 1844242 1844277 -14058278 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 5 599 214 73 73 0 chrY 1844412 1844453 -14058102 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 599 441 0 0 0 chrY 1844501 1844550 -14058005 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 599 221 57 0 28 chrY 1844871 1844907 -14057648 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 599 308 259 11 28 chrY 1845001 1845180 -14057375 + (TATG)n Simple_repeat Simple_repeat 2 177 0 5 599 729 175 23 8 chrY 1845153 1845422 -14057133 + (TATATG)n Simple_repeat Simple_repeat 1 273 0 5 599 400 241 8 43 chrY 1845430 1845547 -14057008 + ORR1D1 LTR MaLR 186 298 -76 5 599 380 174 23 0 chrY 1845561 1845647 -14056908 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 5 599 1620 14 8 14 chrY 1845661 1846022 -14056533 + (TATATG)n Simple_repeat Simple_repeat 1 359 0 5 599 592 182 16 33 chrY 1846022 1846204 -14056351 + (TATG)n Simple_repeat Simple_repeat 1 179 0 5 599 203 61 30 0 chrY 1846301 1846334 -14056221 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 599 28 79 0 0 chrY 1846718 1846781 -14055774 + AT_rich Low_complexity Low_complexity 1 63 0 5 599 345 24 0 0 chrY 1846781 1846823 -14055732 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 5 599 219 114 0 0 chrY 1847028 1847063 -14055492 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 5 599 703 185 11 11 chrY 1847078 1847258 -14055297 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 599 292 257 11 54 chrY 1847793 1847978 -14054577 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 5 599 225 128 0 0 chrY 1848018 1848065 -14054490 + (T)n Simple_repeat Simple_repeat 1 47 0 5 599 353 278 105 111 chrY 1848123 1848512 -14054043 - L1M4c LINE L1 -5327 1057 671 5 599 414 0 0 0 chrY 1849058 1849104 -14053451 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 599 947 159 0 0 chrY 1849147 1849292 -14053263 + B1_Mus2 SINE Alu 1 145 -2 5 599 314 345 104 20 chrY 1849450 1849701 -14052854 + HAL1 LINE L1 820 1091 -1416 5 599 21 0 0 0 chrY 1849828 1849849 -14052706 + AT_rich Low_complexity Low_complexity 1 21 0 5 599 326 284 69 98 chrY 1849925 1850171 -14052384 + L1MC4 LINE L1 741 979 -5236 5 599 371 60 37 74 chrY 1850259 1850367 -14052188 + A-rich Low_complexity Low_complexity 2 105 0 5 599 215 153 0 124 chrY 1850468 1850565 -14051990 + A-rich Low_complexity Low_complexity 6 90 0 5 599 243 191 0 0 chrY 1850888 1850951 -14051604 + A-rich Low_complexity Low_complexity 2 64 0 5 599 24 0 0 0 chrY 1850974 1850998 -14051557 + AT_rich Low_complexity Low_complexity 1 24 0 5 599 266 192 51 0 chrY 1851700 1851778 -14050777 + (TTATA)n Simple_repeat Simple_repeat 1 82 0 5 599 263 246 0 0 chrY 1852224 1852285 -14050270 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 5 599 741 219 11 5 chrY 1852295 1852594 -14049961 + (TA)n Simple_repeat Simple_repeat 1 301 0 5 599 3489 87 6 8 chrY 1852594 1852817 -14049738 + MT2C_Mm LTR ERVL 1 221 -254 5 599 396 0 0 0 chrY 1852817 1852861 -14049694 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 599 3489 87 6 8 chrY 1852861 1853113 -14049442 + MT2C_Mm LTR ERVL 222 475 0 5 599 741 180 11 11 chrY 1853113 1853163 -14049392 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 599 572 201 0 48 chrY 1853148 1853336 -14049219 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 5 599 441 246 15 45 chrY 1853338 1853470 -14049085 - ORR1D1 LTR MaLR -61 313 186 5 599 291 241 0 0 chrY 1853484 1853567 -14048988 + (CATA)n Simple_repeat Simple_repeat 2 84 0 5 599 378 0 0 0 chrY 1853860 1853902 -14048653 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 599 1519 159 95 13 chrY 1855982 1856288 -14046267 + Lx3C LINE L1 6646 6976 0 5 599 240 214 18 18 chrY 1856428 1856485 -14046070 + CT-rich Low_complexity Low_complexity 3 59 0 5 599 633 189 27 0 chrY 1856489 1856600 -14045955 - B1_Mur4 SINE Alu -8 142 29 5 599 1049 89 0 33 chrY 1857291 1857382 -14045173 + B1_Mus1 SINE Alu 3 92 -56 5 599 392 0 0 20 chrY 1857382 1857431 -14045124 + (CATCT)n Simple_repeat Simple_repeat 3 50 0 5 599 1049 89 0 33 chrY 1857431 1857490 -14045065 + B1_Mus1 SINE Alu 93 148 0 5 599 809 227 62 5 chrY 1857659 1857854 -14044701 - B3 SINE B2 -10 206 1 5 599 16392 43 4 16 chrY 1858171 1861112 -14041443 + L1Md_T LINE L1 439 3348 -2535 5 599 2715 107 55 49 chrY 1861112 1861584 -14040971 + IAPLTR2_Mm LTR ERVK 1 475 0 5 599 16392 35 5 4 chrY 1861584 1861609 -14040946 + L1Md_T LINE L1 3349 3365 -2518 5 599 3348 53 5 11 chrY 1861609 1862377 -14040178 + IAPEz-int LTR ERVK 50 662 -5819 5 599 32785 12 2 0 chrY 1862377 1866186 -14036369 + IAPEz-int LTR ERVK 1359 5173 -1308 5 599 7588 23 7 0 chrY 1866182 1867101 -14035454 + IAPEz-int LTR ERVK 5557 6481 0 5 599 2726 105 55 49 chrY 1867101 1867573 -14034982 + IAPLTR2_Mm LTR ERVK 1 475 0 5 599 16124 26 74 1 chrY 1867573 1869664 -14032891 + L1Md_T LINE L1 3343 5586 -297 5 599 8175 40 7 0 chrY 1869664 1870653 -14031902 + L1Md_T LINE L1 5587 6582 0 5 599 298 327 28 18 chrY 1870972 1871081 -14031474 - MER2 DNA MER2_type -26 319 210 5 599 482 274 34 17 chrY 1871087 1871206 -14031349 - PB1 SINE Alu 0 127 7 5 599 378 295 168 15 chrY 1871190 1871393 -14031162 - MER2 DNA MER2_type -101 244 11 5 599 228 316 51 108 chrY 1871847 1872042 -14030513 + Lx8 LINE L1 7082 7265 -208 5 599 495 221 51 42 chrY 1872281 1872399 -14030156 + B1F SINE Alu 29 147 -2 5 599 5647 97 6 6 chrY 1872576 1873446 -14029109 - YREP_Mm Unknown Unknown -824 988 119 5 599 526 181 30 45 chrY 1873683 1873816 -14028739 - YREP_Mm Unknown Unknown -1680 132 2 5 599 391 379 121 29 chrY 1874299 1874712 -14027843 + LTR16E1 LTR ERVL 61 511 -27 5 599 180 0 0 0 chrY 1875234 1875254 -14027301 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 599 34321 18 15 20 chrY 1875672 1880119 -14022436 + L1Md_A LINE L1 452 4926 -957 5 599 225 183 46 77 chrY 1880119 1880184 -14022371 - RMER20A LTR ERVK -268 248 186 5 599 34321 18 15 20 chrY 1880184 1880837 -14021718 + L1Md_A LINE L1 4927 5585 -298 5 599 8668 23 0 0 chrY 1880838 1881834 -14020721 + L1Md_A LINE L1 5587 6582 0 5 599 228 224 0 0 chrY 1882098 1882156 -14020399 + A-rich Low_complexity Low_complexity 4 61 0 5 599 338 296 69 39 chrY 1882198 1882209 -14020346 - B1_Mur3 SINE Alu -44 105 96 5 599 441 0 0 0 chrY 1882209 1882258 -14020297 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 599 338 296 69 39 chrY 1882258 1882348 -14020207 - B1_Mur3 SINE Alu -54 95 1 5 599 288 77 0 0 chrY 1882351 1882390 -14020165 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 599 198 0 0 0 chrY 1882420 1882442 -14020113 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 599 705 239 15 0 chrY 1882443 1882577 -14019978 - B3 SINE B2 -80 136 1 5 599 404 364 37 28 chrY 1882577 1882930 -14019625 - L1MDb LINE L1 -5143 1266 911 5 599 860 226 77 5 chrY 1883048 1883257 -14019298 - URR1A DNA MER1_type -1 225 2 5 599 287 305 100 72 chrY 1883922 1884102 -14018453 - MLT1A1 LTR MaLR -221 187 3 5 599 265 294 42 32 chrY 1884611 1884801 -14017754 - L1M1 LINE L1 -414 5886 5695 5 599 602 260 69 58 chrY 1884822 1885010 -14017545 + MTD LTR MaLR 2 191 -228 5 599 235 26 50 25 chrY 1885606 1885646 -14016909 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 599 2232 103 2 19 chrY 1886399 1886856 -14015699 - L1Md_A LINE L1 -4334 1549 1111 5 599 3965 167 23 6 chrY 1887244 1887937 -14014618 - ETnERV3-int LTR ERVK -204 7202 6498 5 599 846 274 8 8 chrY 1888050 1888293 -14014262 - RNERVK23-int LTR ERVK -469 7748 7506 5 599 5251 161 52 95 chrY 1888316 1890241 -14012314 - ETnERV3-int LTR ERVK -1173 6071 3539 5 599 685 234 374 25 chrY 1890276 1890498 -14012057 - ETnERV2-int LTR ERVK -4653 2753 2454 5 599 559 177 88 0 chrY 1890511 1890624 -14011931 - RMER16-int LTR ERVK -5077 1060 938 5 599 2104 190 138 43 chrY 1890629 1891158 -14011397 - RMER16-int LTR ERVK -4587 819 241 5 599 353 278 57 36 chrY 1891323 1891517 -14011038 - RLTR45-int LTR ERVK -6878 366 169 5 599 3049 95 5 0 chrY 1891858 1892345 -14010210 - L1Md_F LINE L1 -5588 1136 654 5 599 197 33 0 32 chrY 1894606 1894637 -14007918 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 599 342 0 0 0 chrY 1894943 1894981 -14007574 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 599 267 243 27 0 chrY 1895317 1895391 -14007164 - MIR SINE MIR -80 182 107 5 599 278 248 84 17 chrY 1895974 1896093 -14006462 - Lx7 LINE L1 -3 7693 7567 5 599 993 113 18 0 chrY 1896114 1896282 -14006273 + (GA)n Simple_repeat Simple_repeat 2 172 0 5 599 275 313 141 52 chrY 1896345 1896425 -14006130 - Lx7 LINE L1 -403 7293 7215 5 599 228 86 0 0 chrY 1896425 1896460 -14006095 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 599 275 313 141 52 chrY 1896460 1896571 -14005984 - Lx7 LINE L1 -482 7214 7085 5 599 534 81 0 0 chrY 1897028 1897102 -14005453 + B1_Mus2 SINE Alu 72 145 -2 5 599 1141 131 16 37 chrY 1897588 1897779 -14004776 + B2_Mm2 SINE B2 2 188 -7 5 599 195 42 0 0 chrY 1898384 1898408 -14004147 + (A)n Simple_repeat Simple_repeat 1 24 0 5 599 202 337 11 21 chrY 1898487 1898581 -14003974 + (TATG)n Simple_repeat Simple_repeat 1 93 0 5 599 198 0 0 0 chrY 1898640 1898662 -14003893 + (T)n Simple_repeat Simple_repeat 1 22 0 5 599 223 241 191 12 chrY 1900338 1900422 -14002133 + B1_Mur2 SINE Alu 6 104 -45 5 599 258 282 51 0 chrY 1900694 1900775 -14001780 + B1F SINE Alu 8 97 -30 5 599 1344 62 0 0 chrY 1900807 1900986 -14001569 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 599 433 107 23 23 chrY 1900988 1901074 -14001481 + (CACG)n Simple_repeat Simple_repeat 1 86 0 5 599 240 185 0 0 chrY 1901102 1901156 -14001399 + A-rich Low_complexity Low_complexity 1 54 0 5 599 350 293 18 35 chrY 1901264 1901434 -14001121 + GA-rich Low_complexity Low_complexity 4 170 0 5 599 621 0 0 0 chrY 1903274 1903343 -13999212 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 599 384 22 0 0 chrY 1903343 1903387 -13999168 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 599 728 297 12 65 chrY 1903475 1903796 -13998759 + RLTR18 LTR ERVK 13 316 -300 5 599 417 129 0 0 chrY 1903811 1903881 -13998674 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 599 517 267 86 110 chrY 1903888 1904181 -13998374 + RLTR18 LTR ERVK 227 530 -86 5 599 2369 267 54 5 chrY 1905653 1906230 -13996325 - Lx6 LINE L1 -4 7456 6852 5 599 288 111 0 0 chrY 1906230 1906284 -13996271 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 599 1292 203 65 85 chrY 1906284 1906299 -13996256 - Lx6 LINE L1 -565 6895 6882 6 599 855 129 0 0 chrY 1906299 1906477 -13996078 + (TC)n Simple_repeat Simple_repeat 1 178 0 6 599 1292 203 65 85 chrY 1906477 1906576 -13995979 - Lx6 LINE L1 -579 6881 6776 6 599 197 33 0 32 chrY 1906576 1906607 -13995948 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 599 914 118 0 29 chrY 1906610 1906749 -13995806 - B1_Mus1 SINE Alu -12 136 2 6 599 1292 203 65 85 chrY 1906749 1907027 -13995528 - Lx6 LINE L1 -685 6775 6506 6 599 858 60 0 0 chrY 1907415 1907531 -13995024 + B1_Mus2 SINE Alu 30 145 -2 6 599 669 211 53 0 chrY 1907580 1907732 -13994823 - RLTR23 LTR ERV1 -1 429 270 6 599 414 0 0 0 chrY 1908016 1908062 -13994493 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 599 261 0 0 0 chrY 1908062 1908090 -13994465 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 599 409 281 45 68 chrY 1908142 1908318 -13994237 - RLTR17 LTR ERVK -396 296 125 6 599 3266 189 109 74 chrY 1909468 1910436 -13992119 + RLTR42-int LTR ERVK 1873 2874 -2648 6 599 785 103 64 0 chrY 1910436 1910588 -13991967 - ORR1A2 LTR MaLR 0 329 165 6 599 2509 97 3 8 chrY 1910585 1910970 -13991585 - RMER2 LTR ERV1 -184 383 1 6 599 182 289 81 35 chrY 1911467 1911553 -13991002 - L3 LINE CR1 -894 3595 3506 6 599 1735 154 178 22 chrY 1911980 1912351 -13990204 - RLTR23 LTR ERV1 -1 429 1 6 599 779 46 0 9 chrY 1913619 1913728 -13988827 + (TG)n Simple_repeat Simple_repeat 1 108 0 6 599 252 0 0 0 chrY 1913768 1913796 -13988759 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 599 357 113 16 16 chrY 1913799 1913862 -13988693 + RLTR42-int LTR ERVK 1089 1151 -4371 6 599 477 0 0 0 chrY 1915114 1915167 -13987388 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 599 237 33 0 0 chrY 1915458 1915488 -13987067 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 599 519 152 0 26 chrY 1916000 1916115 -13986440 + GA-rich Low_complexity Low_complexity 3 114 0 6 599 396 40 0 0 chrY 1917315 1917365 -13985190 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 599 308 111 19 0 chrY 1917657 1917711 -13984844 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 599 357 218 0 0 chrY 1918485 1918650 -13983905 + (CTG)n Simple_repeat Simple_repeat 1 165 0 6 599 336 220 0 0 chrY 1918728 1918887 -13983668 + (CTG)n Simple_repeat Simple_repeat 1 159 0 6 599 334 294 0 0 chrY 1918887 1919023 -13983532 + (TGG)n Simple_repeat Simple_repeat 3 138 0 6 599 489 157 0 0 chrY 1919025 1919140 -13983415 + (CTG)n Simple_repeat Simple_repeat 3 117 0 6 599 312 0 73 36 chrY 1919732 1919787 -13982768 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 6 599 576 29 0 0 chrY 1920678 1920748 -13981807 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 599 492 156 0 27 chrY 1921948 1922060 -13980495 + CT-rich Low_complexity Low_complexity 3 111 0 6 599 237 33 0 0 chrY 1922572 1922602 -13979953 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 599 477 0 0 0 chrY 1922893 1922946 -13979609 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 599 357 113 16 16 chrY 1924198 1924261 -13978294 - RLTR42-int LTR ERVK -4371 1151 1089 6 599 306 0 0 0 chrY 1924264 1924298 -13978257 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 599 779 46 0 9 chrY 1924338 1924447 -13978108 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 599 1735 154 178 22 chrY 1925715 1926086 -13976469 + RLTR23 LTR ERV1 1 429 -1 6 599 182 289 81 35 chrY 1926513 1926599 -13975956 + L3 LINE CR1 3506 3595 -894 6 599 2509 97 3 8 chrY 1927096 1927481 -13975074 + RMER2 LTR ERV1 1 383 -184 6 599 785 103 64 0 chrY 1927478 1927630 -13974925 + ORR1A2 LTR MaLR 165 329 0 6 599 3266 189 109 74 chrY 1927630 1928598 -13973957 - RLTR42-int LTR ERVK -2648 2874 1873 6 599 409 281 45 68 chrY 1929748 1929924 -13972631 + RLTR17 LTR ERVK 125 296 -396 6 599 261 0 0 0 chrY 1929976 1930005 -13972550 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 599 414 0 0 0 chrY 1930005 1930050 -13972505 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 599 669 211 53 0 chrY 1930334 1930486 -13972069 + RLTR23 LTR ERV1 270 429 -1 6 599 858 60 0 0 chrY 1930535 1930651 -13971904 - B1_Mus2 SINE Alu -2 145 30 6 599 1326 204 66 79 chrY 1931037 1931317 -13971238 + Lx6 LINE L1 6506 6785 -911 6 599 914 118 0 29 chrY 1931317 1931456 -13971099 + B1_Mus1 SINE Alu 2 136 -12 6 599 197 33 0 32 chrY 1931459 1931490 -13971065 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 599 2369 277 62 35 chrY 1931490 1932407 -13970148 + Lx6 LINE L1 6776 7695 -1 6 599 517 267 86 110 chrY 1933879 1934172 -13968383 - RLTR18 LTR ERVK -86 530 227 6 599 417 129 0 0 chrY 1934179 1934249 -13968306 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 599 728 297 12 65 chrY 1934264 1934585 -13967970 - RLTR18 LTR ERVK -300 316 13 6 599 492 18 0 0 chrY 1934672 1934729 -13967826 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 599 549 0 0 0 chrY 1934729 1934789 -13967766 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 599 350 293 18 35 chrY 1936629 1936799 -13965756 + CT-rich Low_complexity Low_complexity 4 170 0 6 599 240 185 0 0 chrY 1936907 1936961 -13965594 + T-rich Low_complexity Low_complexity 1 54 0 6 599 327 119 0 0 chrY 1936989 1937080 -13965475 + (CGTG)n Simple_repeat Simple_repeat 1 91 0 6 599 1356 56 0 0 chrY 1937080 1937258 -13965297 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 599 258 282 51 0 chrY 1937290 1937371 -13965184 - B1F SINE Alu -30 97 8 6 599 223 241 191 12 chrY 1937643 1937727 -13964828 - B1_Mur2 SINE Alu -45 104 6 6 599 189 0 0 0 chrY 1938659 1938680 -13963875 + (T)n Simple_repeat Simple_repeat 1 21 0 6 599 216 0 0 0 chrY 1939405 1939429 -13963126 + (A)n Simple_repeat Simple_repeat 1 24 0 6 599 202 337 11 21 chrY 1939488 1939582 -13962973 + (CATA)n Simple_repeat Simple_repeat 1 93 0 6 599 204 40 0 0 chrY 1939661 1939686 -13962869 + (T)n Simple_repeat Simple_repeat 1 25 0 6 599 1141 131 16 37 chrY 1940291 1940482 -13962073 - B2_Mm2 SINE B2 -7 188 2 6 599 534 81 0 0 chrY 1940968 1941042 -13961513 - B1_Mus2 SINE Alu -2 145 72 6 599 275 313 141 52 chrY 1941499 1941610 -13960945 + Lx7 LINE L1 7085 7214 -482 6 599 228 86 0 0 chrY 1941610 1941645 -13960910 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 599 275 313 141 52 chrY 1941645 1941725 -13960830 + Lx7 LINE L1 7215 7293 -403 6 599 993 113 18 0 chrY 1941788 1941956 -13960599 + (TC)n Simple_repeat Simple_repeat 2 172 0 6 599 278 248 84 17 chrY 1941977 1942096 -13960459 + Lx7 LINE L1 7567 7693 -3 6 599 267 243 27 0 chrY 1942679 1942753 -13959802 + MIR SINE MIR 107 182 -80 6 599 342 0 0 0 chrY 1943089 1943127 -13959428 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 599 197 33 0 32 chrY 1943433 1943464 -13959091 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 599 2980 95 5 0 chrY 1945725 1946212 -13956343 + L1Md_F LINE L1 654 1136 -5588 6 599 342 283 57 36 chrY 1946553 1946747 -13955808 + RLTR45-int LTR ERVK 169 366 -6878 6 599 2072 190 138 43 chrY 1946912 1947441 -13955114 + RMER16-int LTR ERVK 241 819 -4587 6 599 546 195 88 0 chrY 1947446 1947559 -13954996 + RMER16-int LTR ERVK 938 1060 -5077 6 599 271 279 0 55 chrY 1947572 1947663 -13954892 + ETnERV3-int LTR ERVK 2454 2539 -4867 6 599 674 193 0 0 chrY 1947675 1947794 -13954761 + ETnERV3-int LTR ERVK 2635 2753 -4653 6 599 2172 176 109 81 chrY 1947820 1948367 -13954188 + ETnERV3-int LTR ERVK 3567 4616 -2628 6 599 182 234 45 30 chrY 1948367 1948433 -13954122 - L4 LINE RTE -1231 798 732 6 599 2172 176 109 81 chrY 1948433 1948751 -13953804 + ETnERV3-int LTR ERVK 4617 5231 -2013 6 599 4652 166 68 18 chrY 1948755 1949754 -13952801 + ETnERV3-int LTR ERVK 4397 5388 -420 6 599 935 310 15 15 chrY 1949777 1950114 -13952441 + RNERVK23-int LTR ERVK 7506 7842 -375 6 599 4211 167 23 6 chrY 1950133 1950826 -13951729 + ETnERV3-int LTR ERVK 6498 7202 -204 6 599 2340 100 3 4 chrY 1951214 1951671 -13950884 + L1Md_A LINE L1 1111 1549 -4334 6 599 235 26 50 25 chrY 1952424 1952464 -13950091 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 599 593 260 69 58 chrY 1953060 1953248 -13949307 - MTD LTR MaLR -228 191 2 6 599 314 302 40 30 chrY 1953269 1953470 -13949085 + L1MA4 LINE L1 5695 5897 -403 6 599 290 305 100 72 chrY 1953968 1954148 -13948407 + MLT1A1 LTR MaLR 3 187 -221 6 599 926 216 77 5 chrY 1954813 1955022 -13947533 + URR1A DNA MER1_type 2 225 -1 6 599 404 364 37 28 chrY 1955140 1955493 -13947062 + L1MDb LINE L1 911 1266 -5143 6 599 697 239 15 0 chrY 1955493 1955627 -13946928 + B3 SINE B2 1 136 -80 6 599 198 0 0 0 chrY 1955628 1955650 -13946905 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 599 288 77 0 0 chrY 1955680 1955719 -13946836 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 599 335 296 69 39 chrY 1955722 1955812 -13946743 + B1_Mur3 SINE Alu 1 95 -54 6 599 441 0 0 0 chrY 1955812 1955861 -13946694 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 599 335 296 69 39 chrY 1955861 1955872 -13946683 + B1_Mur3 SINE Alu 96 105 -44 6 599 228 224 0 0 chrY 1955914 1955972 -13946583 + T-rich Low_complexity Low_complexity 4 61 0 6 599 38491 21 13 17 chrY 1956234 1957877 -13944678 - L1Md_T LINE L1 -1 6581 4929 6 599 236 167 46 77 chrY 1957877 1957942 -13944613 + RMER20A LTR ERVK 186 248 -268 6 599 38491 21 13 17 chrY 1957942 1962389 -13940166 - L1Md_T LINE L1 -1 4928 452 6 599 180 0 0 0 chrY 1962804 1962824 -13939731 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 599 373 379 121 29 chrY 1963346 1963759 -13938796 - LTR16E1 LTR ERVL -27 511 61 6 599 533 181 30 45 chrY 1964242 1964375 -13938180 + YREP_Mm Unknown Unknown 2 132 -1680 6 599 5679 97 6 6 chrY 1964613 1965483 -13937072 + YREP_Mm Unknown Unknown 119 988 -824 6 599 490 221 51 42 chrY 1965660 1965778 -13936777 - B1F SINE Alu -2 147 29 6 74 236 358 21 0 chrY 1966017 1966112 -13936443 - Lx8 LINE L1 -208 7265 7169 6 600 378 295 168 15 chrY 1966666 1966869 -13935686 + MER2 DNA MER2_type 11 244 -101 6 600 479 274 34 17 chrY 1966853 1966972 -13935583 + PB1 SINE Alu 7 127 0 6 600 303 327 28 18 chrY 1966978 1967087 -13935468 + MER2 DNA MER2_type 210 319 -26 6 600 36629 36 29 6 chrY 1967406 1973421 -13929134 - L1Md_T LINE L1 0 6582 439 6 600 809 227 62 5 chrY 1973738 1973933 -13928622 + B3 SINE B2 1 206 -10 6 600 1037 89 0 33 chrY 1974102 1974161 -13928394 - B1_Mus1 SINE Alu 0 148 93 7 600 392 0 0 20 chrY 1974161 1974210 -13928345 + (AGATG)n Simple_repeat Simple_repeat 3 50 0 7 600 1037 89 0 33 chrY 1974210 1974301 -13928254 - B1_Mus1 SINE Alu -56 92 3 7 600 627 189 27 0 chrY 1974992 1975103 -13927452 + B1_Mur4 SINE Alu 29 142 -8 7 600 240 214 18 18 chrY 1975107 1975164 -13927391 + GA-rich Low_complexity Low_complexity 3 59 0 7 600 1620 153 139 13 chrY 1975304 1975621 -13926934 - Lx3C LINE L1 0 6976 6620 7 600 378 0 0 0 chrY 1977690 1977732 -13924823 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 600 291 241 0 0 chrY 1978025 1978108 -13924447 + (TATG)n Simple_repeat Simple_repeat 2 84 0 7 600 430 238 15 45 chrY 1978122 1978254 -13924301 + ORR1D1 LTR MaLR 186 313 -61 7 600 572 201 0 48 chrY 1978256 1978444 -13924111 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 7 600 741 180 6 17 chrY 1978439 1978479 -13924076 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 600 3485 87 6 8 chrY 1978479 1978731 -13923824 - MT2C_Mm LTR ERVL 0 475 222 7 600 540 0 0 0 chrY 1978731 1978791 -13923764 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 600 3485 87 6 8 chrY 1978791 1979014 -13923541 - MT2C_Mm LTR ERVL -254 221 1 7 600 741 217 9 8 chrY 1979014 1979313 -13923242 + (TA)n Simple_repeat Simple_repeat 1 299 0 7 600 263 246 0 0 chrY 1979323 1979384 -13923171 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 7 600 276 164 82 0 chrY 1979831 1979904 -13922651 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 7 600 25 0 0 0 chrY 1980605 1980630 -13921925 + AT_rich Low_complexity Low_complexity 1 25 0 7 600 234 62 0 0 chrY 1980650 1980682 -13921873 + (GTTTG)n Simple_repeat Simple_repeat 1 32 0 7 600 208 198 0 75 chrY 1981002 1981095 -13921460 + T-rich Low_complexity Low_complexity 2 87 0 7 600 365 54 20 71 chrY 1981238 1981337 -13921218 + (TTTTG)n Simple_repeat Simple_repeat 2 95 0 7 600 304 276 59 114 chrY 1981404 1981658 -13920897 - L1MC4 LINE L1 -5235 980 741 7 600 21 0 0 0 chrY 1981734 1981755 -13920800 + AT_rich Low_complexity Low_complexity 1 21 0 7 600 32 0 0 0 chrY 1981908 1981940 -13920615 + AT_rich Low_complexity Low_complexity 1 32 0 7 600 246 61 61 0 chrY 1982054 1982103 -13920452 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 7 600 953 152 0 0 chrY 1982318 1982463 -13920092 - B1_Mus2 SINE Alu -2 145 1 7 600 450 0 0 0 chrY 1982506 1982556 -13919999 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 600 207 0 0 0 chrY 1983008 1983031 -13919524 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 7 600 353 278 105 111 chrY 1983107 1983496 -13919059 + L1M4c LINE L1 671 1057 -5327 7 600 185 59 59 0 chrY 1983556 1983590 -13918965 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 600 276 263 11 54 chrY 1983619 1983804 -13918751 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 7 600 352 336 36 50 chrY 1984310 1984532 -13918023 - RMER12 LTR ERVK -334 988 770 7 600 219 114 0 0 chrY 1984534 1984569 -13917986 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 7 600 786 193 0 0 chrY 1984778 1984949 -13917606 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 7 600 410 232 8 43 chrY 1984963 1985080 -13917475 - ORR1D1 LTR MaLR -76 298 186 7 600 729 201 25 5 chrY 1985088 1985528 -13917027 + (CATATA)n Simple_repeat Simple_repeat 1 449 0 7 600 255 31 0 0 chrY 1985611 1985643 -13916912 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 600 212 0 36 0 chrY 1985719 1985747 -13916808 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 600 261 0 0 0 chrY 1985970 1985999 -13916556 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 600 214 73 73 0 chrY 1986047 1986088 -13916467 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 600 213 65 0 0 chrY 1986227 1986258 -13916297 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 7 600 268 43 43 0 chrY 1986382 1986428 -13916127 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 7 600 265 186 26 90 chrY 1986723 1986912 -13915643 + (TTA)n Simple_repeat Simple_repeat 2 178 0 7 600 27 0 0 0 chrY 1986934 1986961 -13915594 + AT_rich Low_complexity Low_complexity 1 27 0 7 600 405 227 10 54 chrY 1986987 1987336 -13915219 + (TTATA)n Simple_repeat Simple_repeat 1 333 0 7 600 387 105 0 0 chrY 1987793 1987850 -13914705 + (CAA)n Simple_repeat Simple_repeat 1 57 0 7 600 39 68 0 0 chrY 1987856 1987930 -13914625 + AT_rich Low_complexity Low_complexity 1 74 0 7 600 265 265 0 0 chrY 1987956 1988024 -13914531 - ORR1D2 LTR MaLR -4 366 299 7 600 351 303 8 88 chrY 1988056 1988220 -13914335 - RMER12 LTR ERVK -332 990 844 7 600 2347 145 33 42 chrY 1988220 1988644 -13913911 + RLTR9B2 LTR ERVK 1 420 0 7 600 351 303 8 88 chrY 1988644 1988718 -13913837 - RMER12 LTR ERVK -479 843 771 7 600 701 200 11 0 chrY 1988727 1988902 -13913653 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 7 600 232 92 28 97 chrY 1988910 1988982 -13913573 - ORR1D1 LTR MaLR -237 137 71 7 600 34 55 0 0 chrY 1989773 1989828 -13912727 + AT_rich Low_complexity Low_complexity 1 55 0 7 600 182 166 68 31 chrY 1989904 1990066 -13912489 + (TTATA)n Simple_repeat Simple_repeat 2 169 0 7 600 467 349 7 20 chrY 1990258 1990407 -13912148 - B3 SINE B2 -10 206 60 7 600 296 200 13 0 chrY 1990523 1990598 -13911957 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 600 219 201 28 14 chrY 1990696 1990837 -13911718 + (TA)n Simple_repeat Simple_repeat 1 143 0 7 600 288 304 17 6 chrY 1990856 1991028 -13911527 + (TA)n Simple_repeat Simple_repeat 1 174 0 7 600 305 254 15 22 chrY 1991405 1991542 -13911013 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 7 600 246 226 16 57 chrY 1991677 1991799 -13910756 + (TTA)n Simple_repeat Simple_repeat 3 119 0 7 600 404 239 7 0 chrY 1992074 1992216 -13910339 + (TA)n Simple_repeat Simple_repeat 1 143 0 7 600 525 198 25 13 chrY 1992260 1992419 -13910136 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 7 600 659 224 6 0 chrY 1992387 1992566 -13909989 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 600 277 196 0 0 chrY 1992566 1992612 -13909943 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 600 246 32 0 0 chrY 1992817 1992848 -13909707 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 7 600 253 127 0 71 chrY 1992898 1992983 -13909572 + A-rich Low_complexity Low_complexity 1 79 0 7 600 225 0 0 0 chrY 1993478 1993503 -13909052 + (A)n Simple_repeat Simple_repeat 1 25 0 7 600 211 221 0 103 chrY 1993950 1994086 -13908469 + A-rich Low_complexity Low_complexity 2 123 0 7 600 285 29 0 0 chrY 1994333 1994367 -13908188 + (A)n Simple_repeat Simple_repeat 1 34 0 7 600 243 103 0 0 chrY 1994429 1994468 -13908087 + (A)n Simple_repeat Simple_repeat 1 39 0 7 600 249 108 0 0 chrY 1994562 1994599 -13907956 + (A)n Simple_repeat Simple_repeat 1 37 0 7 600 239 213 26 26 chrY 1994756 1994833 -13907722 + (TTATA)n Simple_repeat Simple_repeat 1 77 0 7 600 573 206 0 27 chrY 1995322 1995507 -13907048 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 600 1668 64 0 5 chrY 1995507 1995728 -13906827 + MT2C_Mm LTR ERVL 2 221 -254 7 600 441 0 0 0 chrY 1995729 1995778 -13906777 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 600 2793 83 83 31 chrY 1995813 1996271 -13906284 - RLTR45 LTR ERVK 0 482 1 7 600 267 79 0 0 chrY 1996273 1996311 -13906244 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 7 600 308 246 25 50 chrY 1996313 1996433 -13906122 - ORR1D1 LTR MaLR -61 313 197 7 600 302 178 0 0 chrY 1996466 1996511 -13906044 + HAL1-3A_ME LINE L1 1974 2018 -840 7 600 596 186 9 22 chrY 1996512 1996742 -13905813 + (CATATA)n Simple_repeat Simple_repeat 1 226 0 7 600 518 179 20 27 chrY 1996763 1996912 -13905643 + (CATATA)n Simple_repeat Simple_repeat 3 150 0 7 600 276 256 122 43 chrY 1996914 1997028 -13905527 - ORR1D1 LTR MaLR -226 144 25 7 600 3130 53 10 2 chrY 1997196 1997589 -13904966 + MTA_Mm LTR MaLR 1 396 0 7 600 31 0 0 0 chrY 1997697 1997728 -13904827 + AT_rich Low_complexity Low_complexity 1 31 0 7 600 277 140 63 21 chrY 1997770 1997918 -13904637 + (TA)n Simple_repeat Simple_repeat 1 154 0 7 600 1719 117 40 7 chrY 1997930 1998337 -13904218 - RLTR45 LTR ERVK -13 469 1 7 600 193 22 41 61 chrY 1998337 1998386 -13904169 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 600 23 0 0 0 chrY 1998408 1998431 -13904124 + AT_rich Low_complexity Low_complexity 1 23 0 7 600 26 0 0 0 chrY 1998565 1998591 -13903964 + AT_rich Low_complexity Low_complexity 1 26 0 7 600 440 344 12 19 chrY 1998623 1998783 -13903772 - B3 SINE B2 0 216 58 7 600 190 160 40 0 chrY 1998893 1998943 -13903612 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 600 280 223 28 19 chrY 1998964 1999290 -13903265 + (TA)n Simple_repeat Simple_repeat 1 329 0 7 600 244 83 42 0 chrY 1999799 1999847 -13902708 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 7 600 985 32 0 0 chrY 1999874 2000000 -13902555 + ORR1A0 LTR MaLR 13 138 -208 7 600 1720 10 15 0 chrY 2000000 2000205 -13902350 + ORR1A0 LTR MaLR 139 346 0 1 600 288 77 0 0 chrY 2000459 2000498 -13902057 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2 600 606 51 0 0 chrY 2000549 2000627 -13901928 + (CATA)n Simple_repeat Simple_repeat 4 81 0 3 600 2955 76 8 8 chrY 2000647 2001043 -13901512 - MTA_Mm LTR MaLR 0 396 1 4 600 5314 96 36 87 chrY 2001044 2001987 -13900568 - MTA_Mm-int LTR MaLR -1 1097 203 4 600 551 183 70 0 chrY 2001987 2002102 -13900453 + ETnERV2-int LTR ERVK 7070 7192 -214 5 600 1545 67 0 5 chrY 2002487 2002697 -13899858 - MTA_Mm-int LTR MaLR -889 209 1 4 600 1717 168 53 58 chrY 2002697 2002870 -13899685 - MTA_Mm LTR MaLR 0 396 223 4 600 237 108 0 0 chrY 2002870 2002907 -13899648 + (GCTG)n Simple_repeat Simple_repeat 2 38 0 6 600 1717 168 53 58 chrY 2002907 2003131 -13899424 - MTA_Mm LTR MaLR -174 222 3 4 600 585 204 17 0 chrY 2003147 2003319 -13899236 + (TA)n Simple_repeat Simple_repeat 1 175 0 7 600 22 56 0 0 chrY 2003813 2003849 -13898706 + AT_rich Low_complexity Low_complexity 1 36 0 8 600 385 221 28 55 chrY 2004344 2004526 -13898029 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 9 600 217 178 23 99 chrY 2004549 2004680 -13897875 + (TTA)n Simple_repeat Simple_repeat 3 123 0 1 600 2970 69 181 9 chrY 2004888 2005325 -13897230 - RLTR1B LTR ERV1 0 512 1 1 600 24 32 0 0 chrY 2005821 2005852 -13896703 + AT_rich Low_complexity Low_complexity 1 31 0 1 600 21 0 0 0 chrY 2006427 2006448 -13896107 + AT_rich Low_complexity Low_complexity 1 21 0 1 600 1060 109 0 0 chrY 2006511 2006658 -13895897 + B1_Mm SINE Alu 1 147 0 1 600 212 77 26 0 chrY 2006658 2006697 -13895858 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 1 600 26 88 0 0 chrY 2006786 2006854 -13895701 + AT_rich Low_complexity Low_complexity 1 68 0 1 600 268 294 0 29 chrY 2006946 2007121 -13895434 + A-rich Low_complexity Low_complexity 1 170 0 1 600 189 0 0 0 chrY 2007372 2007393 -13895162 + (A)n Simple_repeat Simple_repeat 1 21 0 1 600 261 0 0 0 chrY 2007759 2007788 -13894767 + (T)n Simple_repeat Simple_repeat 1 29 0 1 600 990 101 7 0 chrY 2007788 2007927 -13894628 - B1_Mus1 SINE Alu 0 148 9 2 600 270 133 0 87 chrY 2007940 2008055 -13894500 + A-rich Low_complexity Low_complexity 1 105 0 2 600 21 0 0 0 chrY 2008355 2008376 -13894179 + AT_rich Low_complexity Low_complexity 1 21 0 2 600 36 62 0 0 chrY 2008665 2008729 -13893826 + AT_rich Low_complexity Low_complexity 1 64 0 2 600 186 43 0 0 chrY 2009024 2009047 -13893508 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 600 4261 188 40 120 chrY 2009104 2010025 -13892530 + RLTR21 LTR ERVK 403 1251 -321 2 600 872 109 14 0 chrY 2010025 2010172 -13892383 + (TATG)n Simple_repeat Simple_repeat 2 150 0 2 600 4261 188 40 120 chrY 2010172 2010508 -13892047 + RLTR21 LTR ERVK 1252 1560 -12 2 600 3171 123 47 168 chrY 2010516 2011089 -13891466 + L1_Mur2 LINE L1 1610 2154 -3723 2 600 1072 82 0 20 chrY 2011089 2011238 -13891317 + B1_Mus1 SINE Alu 3 148 0 2 600 3171 123 47 168 chrY 2011238 2011630 -13890925 + L1_Mur2 LINE L1 2155 2458 -3419 2 600 2894 75 200 9 chrY 2012090 2012520 -13890035 + RLTR1B LTR ERV1 1 512 0 2 600 30604 29 7 1 chrY 2012520 2016242 -13886313 + MMERGLN-int LTR ERV1 1 3746 -3810 2 600 30421 32 2 1 chrY 2016242 2019936 -13882619 + MMERGLN-int LTR ERV1 3859 7556 0 2 600 2833 68 203 9 chrY 2019936 2020365 -13882190 + RLTR1B LTR ERV1 1 512 0 2 600 5036 91 51 22 chrY 2020414 2020954 -13881601 + RLTR22_Mus LTR ERVK 1 569 -1239 3 600 1860 141 76 83 chrY 2020954 2021350 -13881205 - RLTR9C LTR ERVK 0 393 1 3 600 5036 91 51 22 chrY 2021350 2021597 -13880958 + RLTR22_Mus LTR ERVK 570 811 -997 3 600 198 0 0 0 chrY 2021616 2021638 -13880917 + (T)n Simple_repeat Simple_repeat 1 22 0 3 600 390 306 44 74 chrY 2021864 2022093 -13880462 + RMER12 LTR ERVK 1101 1322 0 3 600 230 250 16 0 chrY 2024066 2024130 -13878425 + MTEa LTR MaLR 315 379 0 3 600 3425 25 5 0 chrY 2024378 2024772 -13877783 + MTA_Mm LTR MaLR 1 396 0 3 600 8876 40 6 2 chrY 2024772 2025866 -13876689 + MTA_Mm-int LTR MaLR 1 1098 0 3 600 3478 23 2 0 chrY 2025866 2026261 -13876294 + MTA_Mm LTR MaLR 1 396 0 3 600 6501 191 79 45 chrY 2026569 2026995 -13875560 - RLTR21 LTR ERVK 0 1572 1185 3 600 720 23 0 0 chrY 2026995 2027081 -13875474 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 3 600 6501 191 79 45 chrY 2027081 2028174 -13874381 - RLTR21 LTR ERVK -388 1184 1 3 600 1607 161 48 84 chrY 2028769 2029102 -13873453 + ORR1A4 LTR MaLR 1 321 -8 3 600 186 71 0 0 chrY 2029233 2029261 -13873294 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 600 530 230 7 100 chrY 2029370 2029387 -13873168 + ID_B1 SINE B4 79 214 -10 4 600 866 124 0 30 chrY 2029387 2029520 -13873035 + B1_Mus2 SINE Alu 9 137 -10 4 600 234 0 0 0 chrY 2029768 2029794 -13872761 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 4 600 946 146 0 22 chrY 2029807 2029989 -13872566 + CT-rich Low_complexity Low_complexity 3 180 0 4 600 984 191 21 16 chrY 2030233 2030424 -13872131 + RLTR23 LTR ERV1 236 427 -3 4 600 189 233 94 62 chrY 2030678 2030742 -13871813 + MIR SINE MIR 32 97 -111 4 600 308 267 28 28 chrY 2031937 2032045 -13870510 + MMERGLN-int LTR ERV1 2984 3091 -4465 4 600 2900 133 39 92 chrY 2032045 2032643 -13869912 - RMER2 LTR ERV1 0 567 2 4 600 2145 119 41 38 chrY 2032955 2033321 -13869234 + IAPLTR1_Mm LTR ERVK 1 367 0 4 600 53856 22 5 6 chrY 2033321 2039801 -13862754 + IAPEz-int LTR ERVK 8 6481 0 4 600 2145 119 41 38 chrY 2039801 2040167 -13862388 + IAPLTR1_Mm LTR ERVK 1 367 0 4 600 654 336 51 49 chrY 2040295 2040987 -13861568 + MMERGLN-int LTR ERV1 3530 4222 -3334 4 600 301 279 49 73 chrY 2041975 2042069 -13860486 - RMER17D LTR ERVK -334 555 463 4 600 808 144 61 0 chrY 2042069 2042201 -13860354 + B1_Mus2 SINE Alu 2 141 -6 5 600 301 279 49 73 chrY 2042201 2042392 -13860163 - RMER17D LTR ERVK -427 462 277 4 600 379 307 44 0 chrY 2042394 2042508 -13860047 + polypurine Low_complexity Low_complexity 4 122 0 5 600 328 258 51 0 chrY 2042509 2042785 -13859770 + GA-rich Low_complexity Low_complexity 1 290 0 5 600 1050 98 17 6 chrY 2042785 2042960 -13859595 + (GGGAA)n Simple_repeat Simple_repeat 1 177 0 5 600 263 333 16 0 chrY 2042960 2042977 -13859578 + polypurine Low_complexity Low_complexity 110 127 0 5 600 245 235 147 0 chrY 2043094 2043162 -13859393 - B4 SINE B4 -60 232 155 5 600 248 236 90 0 chrY 2043398 2043487 -13859068 + L1M3 LINE L1 5610 5706 -474 5 600 35 24 0 0 chrY 2043544 2043586 -13858969 + AT_rich Low_complexity Low_complexity 1 42 0 5 600 464 119 35 12 chrY 2043589 2043674 -13858881 + B2_Mm2 SINE B2 102 188 -7 5 600 447 167 0 0 chrY 2044884 2044974 -13857581 + CT-rich Low_complexity Low_complexity 1 90 0 5 600 931 157 0 7 chrY 2045002 2045150 -13857405 - B1_Mus1 SINE Alu -1 147 1 6 600 24 53 0 0 chrY 2045922 2045960 -13856595 + AT_rich Low_complexity Low_complexity 1 38 0 6 600 29 60 0 0 chrY 2046231 2046281 -13856274 + AT_rich Low_complexity Low_complexity 1 50 0 6 600 571 187 56 51 chrY 2047521 2047718 -13854837 + Lx9 LINE L1 7370 7567 -77 6 600 215 225 0 0 chrY 2048768 2048808 -13853747 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 600 613 234 104 50 chrY 2049113 2049315 -13853240 + B3 SINE B2 4 216 0 6 600 21 0 0 0 chrY 2049861 2049882 -13852673 + GC_rich Low_complexity Low_complexity 1 21 0 6 600 1049 64 0 44 chrY 2050000 2050180 -13852375 + (GGGAGA)n Simple_repeat Simple_repeat 3 174 0 6 600 294 164 0 0 chrY 2050181 2050236 -13852319 + GA-rich Low_complexity Low_complexity 6 60 0 6 600 868 63 0 84 chrY 2050237 2050428 -13852127 + (GGGAGA)n Simple_repeat Simple_repeat 6 180 0 6 600 399 105 11 44 chrY 2050453 2050543 -13852012 + GA-rich Low_complexity Low_complexity 6 92 0 7 600 201 146 0 0 chrY 2051719 2051767 -13850788 + (T)n Simple_repeat Simple_repeat 1 48 0 7 600 1092 66 0 0 chrY 2051791 2051928 -13850627 - B1_Mus2 SINE Alu -10 137 1 7 600 637 124 232 65 chrY 2052588 2052743 -13849812 + B2_Mm2 SINE B2 1 181 -14 7 600 594 79 0 0 chrY 2053198 2053287 -13849268 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 600 614 280 94 22 chrY 2053500 2053767 -13848788 + Lx7 LINE L1 7101 7386 -310 7 600 555 333 0 31 chrY 2053954 2054115 -13848440 - B4 SINE B4 -5 287 132 7 600 459 245 258 24 chrY 2054439 2054606 -13847949 + B3 SINE B2 1 206 -10 7 600 181 53 25 50 chrY 2055638 2055678 -13846877 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 600 471 273 7 59 chrY 2055765 2055917 -13846638 - B1F2 SINE Alu -5 144 1 7 600 1243 35 18 12 chrY 2056364 2056535 -13846020 + L1Md_F3 LINE L1 6413 6584 0 8 600 274 246 26 9 chrY 2057023 2057138 -13845417 + ORR1B1-int LTR MaLR 638 754 -755 8 600 1052 74 0 0 chrY 2057035 2057170 -13845385 + B1_Mus1 SINE Alu 6 140 -8 8 600 27 0 0 0 chrY 2057184 2057211 -13845344 + AT_rich Low_complexity Low_complexity 1 27 0 8 600 2320 62 33 0 chrY 2057211 2057517 -13845038 - L1_Mus1 LINE L1 0 6567 6252 8 600 441 0 0 0 chrY 2057542 2057591 -13844964 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 600 420 350 33 30 chrY 2059030 2059333 -13843222 - RLTR4_MM-int LTR ERV1 -6821 780 477 8 600 248 70 0 23 chrY 2060484 2060528 -13842027 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 8 600 1073 0 24 0 chrY 2060798 2060925 -13841630 + (TAAAG)n Simple_repeat Simple_repeat 4 133 0 8 600 4523 93 29 9 chrY 2061060 2061742 -13840813 + L1_Mus3 LINE L1 5942 6637 -1 8 600 710 128 28 7 chrY 2062935 2063077 -13839478 - Lx LINE L1 -8 6646 6502 9 600 1093 284 58 72 chrY 2063805 2064234 -13838321 - BGLII_B LTR ERVK -18 423 1 9 600 1767 148 20 11 chrY 2064236 2064592 -13837963 + Lx4B LINE L1 5091 5449 -428 9 600 292 245 79 30 chrY 2064595 2064696 -13837859 - RLTR23 LTR ERV1 0 430 325 9 600 3857 220 67 41 chrY 2065094 2065742 -13836813 + Lx4B LINE L1 5449 6125 -933 9 600 1047 78 0 0 chrY 2065742 2065884 -13836671 + (TC)n Simple_repeat Simple_repeat 2 143 0 9 600 3857 248 25 96 chrY 2065884 2066918 -13835637 + Lx4B LINE L1 6126 7051 -7 9 600 2287 151 60 9 chrY 2066979 2067399 -13835156 + BGLII_B LTR ERVK 1 441 0 9 600 1045 122 0 0 chrY 2067436 2067584 -13834971 + B1_Mus1 SINE Alu 1 148 0 9 600 5742 105 1 10 chrY 2067587 2068498 -13834057 - MusHAL1 LINE L1 -526 2186 1284 9 600 10297 111 30 12 chrY 2068494 2070439 -13832116 + L1_Mus1 LINE L1 4180 6145 -422 9 600 238 203 0 68 chrY 2070408 2070482 -13832073 + L1_Mus1 LINE L1 6256 6324 -243 9 600 3731 176 9 18 chrY 2070481 2071265 -13831290 + Lx4B LINE L1 4952 5747 -1311 9 600 225 0 0 0 chrY 2071265 2071290 -13831265 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 600 884 207 245 40 chrY 2071290 2071615 -13830940 + Lx4B LINE L1 5748 6162 -896 9 600 236 53 26 0 chrY 2071842 2071880 -13830675 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 600 186 103 0 0 chrY 2072360 2072389 -13830166 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 600 837 30 0 0 chrY 2072929 2073029 -13829526 + (TC)n Simple_repeat Simple_repeat 2 101 0 1 600 22 0 0 0 chrY 2073604 2073626 -13828929 + AT_rich Low_complexity Low_complexity 1 22 0 1 600 292 73 55 0 chrY 2073824 2073879 -13828676 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1 600 896 83 0 0 chrY 2074912 2075044 -13827511 - C573_MM Other Other -390 132 1 1 600 925 248 71 65 chrY 2075562 2075916 -13826639 + Lx8 LINE L1 7113 7468 -5 1 600 584 121 20 0 chrY 2076007 2076106 -13826449 + L1_Mur2 LINE L1 5351 5451 -426 1 600 284 285 85 79 chrY 2076126 2076290 -13826265 - RLTR23 LTR ERV1 -19 411 247 1 600 3554 211 41 24 chrY 2076613 2077272 -13825283 + Lx5 LINE L1 5449 6127 -923 1 600 1236 67 0 0 chrY 2077272 2077452 -13825103 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 600 3554 223 20 55 chrY 2077452 2077923 -13824632 + Lx5 LINE L1 6128 6570 -480 1 600 847 259 36 71 chrY 2077924 2078261 -13824294 + Lx5 LINE L1 6720 7044 -6 1 600 1190 211 32 25 chrY 2078301 2078583 -13823972 + BGLII_B LTR ERVK 3 286 -155 1 600 3350 123 48 141 chrY 2078726 2079054 -13823501 - L1_Mur2 LINE L1 -3419 2458 2162 1 600 369 0 0 0 chrY 2079054 2079095 -13823460 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 1 600 3350 123 48 141 chrY 2079095 2079127 -13823428 - L1_Mur2 LINE L1 -3716 2161 2155 1 600 1060 89 0 20 chrY 2079127 2079276 -13823279 - B1_Mus1 SINE Alu 0 148 3 1 600 3350 123 48 141 chrY 2079276 2079850 -13822705 - L1_Mur2 LINE L1 -3723 2154 1610 1 600 4417 184 39 116 chrY 2079858 2080192 -13822363 - RLTR21 LTR ERVK -12 1560 1252 1 600 699 120 0 0 chrY 2080192 2080309 -13822246 + (CATA)n Simple_repeat Simple_repeat 2 118 0 1 600 4417 184 39 116 chrY 2080309 2081228 -13821327 - RLTR21 LTR ERVK -321 1251 404 1 600 447 95 0 0 chrY 2081779 2081853 -13820702 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 600 303 28 0 0 chrY 2081870 2081906 -13820649 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1 600 471 273 7 59 chrY 2082773 2082925 -13819630 + B1F2 SINE Alu 1 144 -5 1 600 21 36 0 0 chrY 2082960 2082988 -13819567 + AT_rich Low_complexity Low_complexity 1 28 0 1 600 206 147 14 68 chrY 2083012 2083085 -13819470 + (CAAA)n Simple_repeat Simple_repeat 2 70 0 1 600 459 245 258 24 chrY 2084079 2084246 -13818309 - B3 SINE B2 -10 206 1 1 600 583 314 0 31 chrY 2084570 2084731 -13817824 + B4 SINE B4 132 287 -5 1 600 600 281 87 29 chrY 2084874 2085185 -13817370 - Lx7 LINE L1 -267 7429 7101 1 600 954 54 0 0 chrY 2085397 2085526 -13817029 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 600 618 131 232 65 chrY 2085981 2086136 -13816419 - B2_Mm2 SINE B2 -14 181 1 1 600 1092 66 0 0 chrY 2086795 2086932 -13815623 + B1_Mus2 SINE Alu 1 137 -10 1 600 201 146 0 0 chrY 2086956 2087004 -13815551 + (A)n Simple_repeat Simple_repeat 1 48 0 1 600 601 125 6 50 chrY 2088180 2088340 -13814215 + CT-rich Low_complexity Low_complexity 6 158 0 1 600 1290 34 0 33 chrY 2088341 2088524 -13814031 + (TCTCCC)n Simple_repeat Simple_repeat 4 180 0 1 600 21 0 0 0 chrY 2088649 2088670 -13813885 + GC_rich Low_complexity Low_complexity 1 21 0 1 600 613 234 104 50 chrY 2089216 2089418 -13813137 - B3 SINE B2 0 216 4 1 600 215 225 0 0 chrY 2089723 2089763 -13812792 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 600 558 192 56 51 chrY 2090813 2091010 -13811545 - Lx9 LINE L1 -77 7567 7370 1 600 29 60 0 0 chrY 2092250 2092300 -13810255 + AT_rich Low_complexity Low_complexity 1 50 0 1 600 24 53 0 0 chrY 2092571 2092609 -13809946 + AT_rich Low_complexity Low_complexity 1 38 0 1 600 931 157 0 7 chrY 2093381 2093529 -13809026 + B1_Mus1 SINE Alu 1 147 -1 1 600 447 167 0 0 chrY 2093557 2093647 -13808908 + GA-rich Low_complexity Low_complexity 1 90 0 1 600 459 111 37 12 chrY 2094860 2094942 -13807613 - B2_Mm2 SINE B2 -10 185 102 1 600 35 24 0 0 chrY 2094945 2094987 -13807568 + AT_rich Low_complexity Low_complexity 1 42 0 1 600 248 236 90 0 chrY 2095044 2095133 -13807422 - L1M3 LINE L1 -474 5706 5610 1 600 245 235 147 0 chrY 2095369 2095437 -13807118 + B4 SINE B4 155 232 -60 1 600 253 310 17 17 chrY 2095554 2095600 -13806955 + polypyrimidine Low_complexity Low_complexity 71 116 0 1 600 903 46 15 22 chrY 2095600 2095734 -13806821 + (TTCCC)n Simple_repeat Simple_repeat 4 136 0 1 600 253 310 17 17 chrY 2095734 2095802 -13806753 + polypyrimidine Low_complexity Low_complexity 3 70 0 1 600 381 235 37 14 chrY 2095807 2096107 -13806448 + CT-rich Low_complexity Low_complexity 1 307 0 1 600 754 159 13 13 chrY 2096123 2096282 -13806273 + CT-rich Low_complexity Low_complexity 2 160 0 1 600 330 217 58 0 chrY 2096314 2096434 -13806121 + CT-rich Low_complexity Low_complexity 4 130 0 1 600 344 193 103 66 chrY 2096464 2096641 -13805914 + RMER17D LTR ERVK 274 462 -427 1 600 808 144 61 0 chrY 2096641 2096773 -13805782 - B1_Mus2 SINE Alu -6 141 2 1 600 344 193 103 66 chrY 2096773 2096867 -13805688 + RMER17D LTR ERVK 463 555 -334 1 601 654 324 74 67 chrY 2097855 2098981 -13803574 - MMERGLN-int LTR ERV1 -3334 4222 3169 1 601 2900 133 39 92 chrY 2098981 2099579 -13802976 + RMER2 LTR ERV1 2 567 0 1 601 394 316 89 78 chrY 2099579 2099699 -13802856 - MMERGLN-int LTR ERV1 -4610 3168 3050 1 601 189 233 94 62 chrY 2100882 2100946 -13801609 - MIR SINE MIR -111 97 32 1 601 984 191 21 16 chrY 2101200 2101391 -13801164 - RLTR23 LTR ERV1 -3 427 236 1 601 946 146 0 22 chrY 2101635 2101817 -13800738 + GA-rich Low_complexity Low_complexity 3 180 0 1 601 234 0 0 0 chrY 2101830 2101856 -13800699 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 601 866 124 0 30 chrY 2102104 2102237 -13800318 - B1_Mus2 SINE Alu -10 137 9 1 601 530 230 7 100 chrY 2102237 2102254 -13800301 - ID_B1 SINE B4 -10 214 79 1 601 186 71 0 0 chrY 2102363 2102391 -13800164 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 601 1607 161 48 84 chrY 2102522 2102855 -13799700 - ORR1A4 LTR MaLR -8 321 1 1 601 6501 191 79 45 chrY 2103450 2104543 -13798012 + RLTR21 LTR ERVK 1 1184 -388 1 601 648 26 0 0 chrY 2104543 2104621 -13797934 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 1 601 6501 191 79 45 chrY 2104621 2105047 -13797508 + RLTR21 LTR ERVK 1185 1572 0 1 601 3478 23 2 0 chrY 2105355 2105750 -13796805 - MTA_Mm LTR MaLR 0 396 1 1 601 230 250 16 0 chrY 2105998 2106062 -13796493 - MTEa LTR MaLR 0 379 315 1 601 390 306 44 74 chrY 2108035 2108264 -13794291 - RMER12 LTR ERVK 0 1322 1101 1 601 5098 87 52 20 chrY 2108526 2108773 -13793782 - RLTR22_Mus LTR ERVK -997 811 570 1 601 1866 132 76 83 chrY 2108773 2109169 -13793386 + RLTR9C LTR ERVK 1 393 0 1 601 5098 87 52 20 chrY 2109169 2109707 -13792848 - RLTR22_Mus LTR ERVK -1239 569 1 1 601 3108 124 46 175 chrY 2110212 2110612 -13791943 - L1_Mur2 LINE L1 -3419 2458 2155 1 601 1072 82 0 20 chrY 2110612 2110761 -13791794 - B1_Mus1 SINE Alu 0 148 3 1 601 3108 124 46 175 chrY 2110761 2111335 -13791220 - L1_Mur2 LINE L1 -3723 2154 1610 1 601 2781 177 16 188 chrY 2111343 2112227 -13790328 - RLTR21 LTR ERVK -12 1560 829 1 601 621 102 120 0 chrY 2112214 2112322 -13790233 - RLTR21 LTR ERVK -286 1286 1166 1 601 2378 165 5 2 chrY 2112315 2112735 -13789820 - RLTR21 LTR ERVK -748 824 404 1 601 462 83 0 0 chrY 2113286 2113358 -13789197 + (TCTCTG)n Simple_repeat Simple_repeat 6 77 0 1 601 516 32 0 0 chrY 2113365 2113427 -13789128 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 1 601 471 273 7 59 chrY 2114293 2114445 -13788110 + B1F2 SINE Alu 1 144 -5 1 601 21 36 0 0 chrY 2114480 2114508 -13788047 + AT_rich Low_complexity Low_complexity 1 28 0 1 601 239 0 32 0 chrY 2114550 2114581 -13787974 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1 601 459 245 258 24 chrY 2115610 2115777 -13786778 - B3 SINE B2 -10 206 1 1 601 569 323 0 31 chrY 2116101 2116264 -13786291 + B4 SINE B4 132 289 -3 1 601 600 281 87 29 chrY 2116407 2116718 -13785837 - Lx7 LINE L1 -267 7429 7101 1 601 387 73 0 0 chrY 2116930 2116985 -13785570 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 601 618 131 232 65 chrY 2117440 2117595 -13784960 - B2_Mm2 SINE B2 -14 181 1 1 601 1092 66 0 0 chrY 2118254 2118391 -13784164 + B1_Mus2 SINE Alu 1 137 -10 1 601 201 146 0 0 chrY 2118415 2118463 -13784092 + (A)n Simple_repeat Simple_repeat 1 48 0 1 601 399 105 11 44 chrY 2119639 2119729 -13782826 + CT-rich Low_complexity Low_complexity 6 92 0 1 601 868 63 0 84 chrY 2119754 2119945 -13782610 + (TCTCCC)n Simple_repeat Simple_repeat 6 180 0 1 601 294 164 0 0 chrY 2119946 2120001 -13782554 + CT-rich Low_complexity Low_complexity 6 60 0 1 601 1049 64 0 44 chrY 2120002 2120182 -13782373 + (TCTCCC)n Simple_repeat Simple_repeat 3 174 0 1 601 21 0 0 0 chrY 2120300 2120321 -13782234 + GC_rich Low_complexity Low_complexity 1 21 0 1 601 613 234 104 50 chrY 2120867 2121069 -13781486 - B3 SINE B2 0 216 4 1 601 215 225 0 0 chrY 2121374 2121414 -13781141 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 601 571 187 56 51 chrY 2122464 2122661 -13779894 - Lx9 LINE L1 -77 7567 7370 1 601 29 60 0 0 chrY 2123901 2123951 -13778604 + AT_rich Low_complexity Low_complexity 1 50 0 1 601 24 53 0 0 chrY 2124222 2124260 -13778295 + AT_rich Low_complexity Low_complexity 1 38 0 1 601 923 158 0 7 chrY 2125032 2125179 -13777376 + B1_Mus1 SINE Alu 1 146 -2 1 601 471 148 0 0 chrY 2125207 2125295 -13777260 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 601 459 111 37 12 chrY 2126508 2126590 -13775965 - B2_Mm2 SINE B2 -10 185 102 1 601 35 24 0 0 chrY 2126593 2126635 -13775920 + AT_rich Low_complexity Low_complexity 1 42 0 1 601 248 236 90 0 chrY 2126692 2126781 -13775774 - L1M3 LINE L1 -474 5706 5610 1 601 245 235 147 0 chrY 2127017 2127085 -13775470 + B4 SINE B4 155 232 -60 1 601 903 46 15 22 chrY 2127202 2127382 -13775173 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 1 601 354 260 15 111 chrY 2127382 2127534 -13775021 + polypyrimidine Low_complexity Low_complexity 1 136 0 1 601 306 318 52 39 chrY 2127558 2127712 -13774843 - HAL1-3A_ME LINE L1 -419 2439 2284 2 601 754 190 35 19 chrY 2127771 2128087 -13774468 + CT-rich Low_complexity Low_complexity 1 320 0 2 601 304 235 57 81 chrY 2128091 2128279 -13774276 + RMER17D LTR ERVK 280 462 -427 2 601 808 144 61 0 chrY 2128279 2128411 -13774144 - B1_Mus2 SINE Alu -6 141 2 2 601 304 235 57 81 chrY 2128411 2128505 -13774050 + RMER17D LTR ERVK 463 555 -334 2 601 654 336 51 49 chrY 2129493 2130185 -13772370 - MMERGLN-int LTR ERV1 -3334 4222 3530 2 601 2145 119 41 38 chrY 2130313 2130679 -13771876 - IAPLTR1_Mm LTR ERVK 0 367 1 2 601 53856 22 5 6 chrY 2130679 2137159 -13765396 - IAPEz-int LTR ERVK 0 6481 8 2 601 2145 119 41 38 chrY 2137159 2137525 -13765030 - IAPLTR1_Mm LTR ERVK 0 367 1 2 601 2900 133 39 92 chrY 2137837 2138435 -13764120 + RMER2 LTR ERV1 2 567 0 2 601 308 267 28 28 chrY 2138435 2138543 -13764012 - MMERGLN-int LTR ERV1 -4465 3091 2984 2 601 189 233 94 62 chrY 2139738 2139802 -13762753 - MIR SINE MIR -111 97 32 2 601 984 191 21 16 chrY 2140056 2140247 -13762308 - RLTR23 LTR ERV1 -3 427 236 2 601 925 152 11 11 chrY 2140489 2140669 -13761886 + GA-rich Low_complexity Low_complexity 1 180 0 2 601 201 39 0 0 chrY 2140674 2140700 -13761855 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 2 601 866 124 0 30 chrY 2140948 2141081 -13761474 - B1_Mus2 SINE Alu -10 137 9 2 601 530 230 7 100 chrY 2141081 2141098 -13761457 - ID_B1 SINE B4 -10 214 79 2 601 186 71 0 0 chrY 2141207 2141235 -13761320 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 601 1607 161 48 84 chrY 2141366 2141699 -13760856 - ORR1A4 LTR MaLR -8 321 1 2 601 6505 191 79 45 chrY 2142294 2143387 -13759168 + RLTR21 LTR ERVK 1 1184 -388 2 601 612 27 0 0 chrY 2143387 2143461 -13759094 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 2 601 6505 191 79 45 chrY 2143461 2143887 -13758668 + RLTR21 LTR ERVK 1185 1572 0 2 601 3478 23 2 0 chrY 2144195 2144590 -13757965 - MTA_Mm LTR MaLR 0 396 1 2 601 230 250 16 0 chrY 2144838 2144902 -13757653 - MTEa LTR MaLR 0 379 315 2 601 380 306 44 74 chrY 2146875 2147104 -13755451 - RMER12 LTR ERVK 0 1322 1101 2 601 5085 88 52 20 chrY 2147368 2147615 -13754940 - RLTR22_Mus LTR ERVK -997 811 570 2 601 1866 132 76 83 chrY 2147615 2148011 -13754544 + RLTR9C LTR ERVK 1 393 0 2 601 5085 88 52 20 chrY 2148011 2148549 -13754006 - RLTR22_Mus LTR ERVK -1239 569 1 2 601 3090 124 46 178 chrY 2149045 2149448 -13753107 - L1_Mur2 LINE L1 -3419 2458 2153 2 601 1048 89 0 20 chrY 2149448 2149597 -13752958 - B1_Mus1 SINE Alu 0 148 3 2 601 3090 124 46 178 chrY 2149597 2150171 -13752384 - L1_Mur2 LINE L1 -3725 2152 1610 2 601 4502 179 40 117 chrY 2150179 2150512 -13752043 - RLTR21 LTR ERVK -12 1560 1252 2 601 734 110 16 0 chrY 2150512 2150639 -13751916 + (CATA)n Simple_repeat Simple_repeat 2 130 0 2 601 4502 179 40 117 chrY 2150639 2151559 -13750996 - RLTR21 LTR ERVK -321 1251 404 2 601 294 87 0 0 chrY 2152110 2152156 -13750399 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 2 601 576 0 0 0 chrY 2152167 2152231 -13750324 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 2 601 471 273 7 59 chrY 2153098 2153250 -13749305 + B1F2 SINE Alu 1 144 -5 2 601 21 36 0 0 chrY 2153285 2153313 -13749242 + AT_rich Low_complexity Low_complexity 1 28 0 2 601 206 147 14 68 chrY 2153337 2153410 -13749145 + (CAAA)n Simple_repeat Simple_repeat 2 70 0 2 601 459 245 258 24 chrY 2154403 2154570 -13747985 - B3 SINE B2 -10 206 1 2 601 583 314 0 31 chrY 2154894 2155055 -13747500 + B4 SINE B4 132 287 -5 2 601 600 281 87 29 chrY 2155198 2155509 -13747046 - Lx7 LINE L1 -267 7429 7101 2 601 810 62 0 0 chrY 2155721 2155834 -13746721 + (TG)n Simple_repeat Simple_repeat 2 114 0 2 601 637 124 232 65 chrY 2156289 2156444 -13746111 - B2_Mm2 SINE B2 -14 181 1 2 601 1092 66 0 0 chrY 2157104 2157241 -13745314 + B1_Mus2 SINE Alu 1 137 -10 2 601 192 149 0 0 chrY 2157265 2157312 -13745243 + (A)n Simple_repeat Simple_repeat 1 47 0 2 601 841 109 2 61 chrY 2158488 2158916 -13743639 + CT-rich Low_complexity Low_complexity 1 402 0 2 601 958 73 0 53 chrY 2158917 2159105 -13743450 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 601 21 0 0 0 chrY 2159223 2159244 -13743311 + GC_rich Low_complexity Low_complexity 1 21 0 2 601 613 234 104 50 chrY 2159790 2159992 -13742563 - B3 SINE B2 0 216 4 2 601 215 225 0 0 chrY 2160297 2160337 -13742218 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 601 575 197 50 50 chrY 2161388 2161586 -13740969 - Lx9 LINE L1 -77 7567 7370 2 601 29 60 0 0 chrY 2162826 2162876 -13739679 + AT_rich Low_complexity Low_complexity 1 50 0 2 601 24 53 0 0 chrY 2163147 2163185 -13739370 + AT_rich Low_complexity Low_complexity 1 38 0 2 601 923 158 0 7 chrY 2163957 2164104 -13738451 + B1_Mus1 SINE Alu 1 146 -2 2 601 489 144 0 0 chrY 2164132 2164222 -13738333 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 601 459 111 37 12 chrY 2165435 2165517 -13737038 - B2_Mm2 SINE B2 -10 185 102 2 601 35 24 0 0 chrY 2165520 2165562 -13736993 + AT_rich Low_complexity Low_complexity 1 42 0 2 601 248 236 90 0 chrY 2165619 2165708 -13736847 - L1M3 LINE L1 -474 5706 5610 2 601 245 235 147 0 chrY 2165944 2166012 -13736543 + B4 SINE B4 155 232 -60 2 601 938 161 28 26 chrY 2166140 2166698 -13735857 + CT-rich Low_complexity Low_complexity 1 558 0 2 601 482 155 28 44 chrY 2166721 2166903 -13735652 + CT-rich Low_complexity Low_complexity 1 179 0 2 601 449 100 33 11 chrY 2166884 2166975 -13735580 + (TC)n Simple_repeat Simple_repeat 1 93 0 2 601 808 144 61 0 chrY 2166993 2167125 -13735430 - B1_Mus2 SINE Alu -6 141 2 2 601 654 324 74 67 chrY 2168207 2169333 -13733222 - MMERGLN-int LTR ERV1 -3334 4222 3169 2 601 2900 133 39 92 chrY 2169333 2169931 -13732624 + RMER2 LTR ERV1 2 567 0 2 601 394 316 89 78 chrY 2169931 2170051 -13732504 - MMERGLN-int LTR ERV1 -4610 3168 3050 2 601 189 233 94 62 chrY 2171234 2171298 -13731257 - MIR SINE MIR -111 97 32 2 601 984 191 21 16 chrY 2171552 2171743 -13730812 - RLTR23 LTR ERV1 -3 427 236 2 601 1045 124 11 6 chrY 2172006 2172185 -13730370 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 601 234 0 0 0 chrY 2172190 2172216 -13730339 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 2 601 866 124 0 30 chrY 2172464 2172597 -13729958 - B1_Mus2 SINE Alu -10 137 9 2 601 530 230 7 100 chrY 2172597 2172614 -13729941 - ID_B1 SINE B4 -10 214 79 2 601 186 71 0 0 chrY 2172723 2172751 -13729804 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 601 1607 161 48 84 chrY 2172882 2173215 -13729340 - ORR1A4 LTR MaLR -8 321 1 2 601 6501 191 79 45 chrY 2173810 2174903 -13727652 + RLTR21 LTR ERVK 1 1184 -388 2 601 720 23 0 0 chrY 2174903 2174989 -13727566 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 2 601 6501 191 79 45 chrY 2174989 2175415 -13727140 + RLTR21 LTR ERVK 1185 1572 0 2 601 3478 23 2 0 chrY 2175723 2176118 -13726437 - MTA_Mm LTR MaLR 0 396 1 2 601 230 250 16 0 chrY 2176366 2176430 -13726125 - MTEa LTR MaLR 0 379 315 2 601 390 306 44 74 chrY 2178403 2178632 -13723923 - RMER12 LTR ERVK 0 1322 1101 2 601 189 0 0 0 chrY 2178858 2178879 -13723676 + (A)n Simple_repeat Simple_repeat 1 21 0 2 601 5098 87 52 20 chrY 2178898 2179145 -13723410 - RLTR22_Mus LTR ERVK -997 811 570 2 601 1866 132 76 83 chrY 2179145 2179541 -13723014 + RLTR9C LTR ERVK 1 393 0 2 601 5098 87 52 20 chrY 2179541 2180079 -13722476 - RLTR22_Mus LTR ERVK -1239 569 1 2 601 3096 124 46 177 chrY 2180584 2180986 -13721569 - L1_Mur2 LINE L1 -3419 2458 2153 2 601 1072 82 0 20 chrY 2180986 2181135 -13721420 - B1_Mus1 SINE Alu 0 148 3 2 601 3096 124 46 177 chrY 2181135 2181709 -13720846 - L1_Mur2 LINE L1 -3725 2152 1610 2 601 4509 184 37 113 chrY 2181717 2182049 -13720506 - RLTR21 LTR ERVK -12 1560 1252 2 601 854 119 13 0 chrY 2182049 2182200 -13720355 + (CATA)n Simple_repeat Simple_repeat 2 154 0 2 601 4509 184 37 113 chrY 2182200 2183119 -13719436 - RLTR21 LTR ERVK -321 1251 404 2 601 408 91 0 0 chrY 2183670 2183736 -13718819 + (TCTCTG)n Simple_repeat Simple_repeat 6 71 0 2 601 516 32 0 0 chrY 2183743 2183805 -13718750 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 2 601 471 273 7 59 chrY 2184671 2184823 -13717732 + B1F2 SINE Alu 1 144 -5 2 601 21 36 0 0 chrY 2184858 2184886 -13717669 + AT_rich Low_complexity Low_complexity 1 28 0 2 601 203 0 37 0 chrY 2184928 2184955 -13717600 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 601 459 245 258 24 chrY 2185985 2186152 -13716403 - B3 SINE B2 -10 206 1 2 601 569 323 0 31 chrY 2186476 2186639 -13715916 + B4 SINE B4 132 289 -3 2 601 600 281 87 29 chrY 2186782 2187093 -13715462 - Lx7 LINE L1 -267 7429 7101 2 601 879 65 0 0 chrY 2187305 2187428 -13715127 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 601 618 131 232 65 chrY 2187883 2188038 -13714517 - B2_Mm2 SINE B2 -14 181 1 2 601 1092 66 0 0 chrY 2188697 2188834 -13713721 + B1_Mus2 SINE Alu 1 137 -10 2 601 201 146 0 0 chrY 2188858 2188906 -13713649 + (A)n Simple_repeat Simple_repeat 1 48 0 2 601 601 125 6 50 chrY 2190082 2190242 -13712313 + CT-rich Low_complexity Low_complexity 6 158 0 2 601 320 75 0 70 chrY 2190243 2190300 -13712255 + (TCTCCC)n Simple_repeat Simple_repeat 2 54 0 2 601 861 163 0 0 chrY 2190310 2190488 -13712067 + CT-rich Low_complexity Low_complexity 2 179 0 2 601 999 61 0 62 chrY 2190499 2190691 -13711864 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 2 601 21 0 0 0 chrY 2190831 2190852 -13711703 + GC_rich Low_complexity Low_complexity 1 21 0 2 601 613 234 104 50 chrY 2191398 2191600 -13710955 - B3 SINE B2 0 216 4 2 601 215 225 0 0 chrY 2191905 2191945 -13710610 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 601 584 169 59 53 chrY 2193006 2193193 -13709362 - Lx9 LINE L1 -87 7557 7370 2 601 29 60 0 0 chrY 2194433 2194483 -13708072 + AT_rich Low_complexity Low_complexity 1 50 0 2 601 24 53 0 0 chrY 2194754 2194792 -13707763 + AT_rich Low_complexity Low_complexity 1 38 0 2 602 704 160 23 23 chrY 2345330 2345458 -13557097 - RLTR23 LTR ERV1 -67 363 236 2 602 1037 141 0 6 chrY 2345702 2345881 -13556674 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 602 234 0 0 0 chrY 2345909 2345935 -13556620 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 3 602 872 124 0 30 chrY 2346183 2346316 -13556239 - B1_Mus2 SINE Alu -10 137 9 3 602 531 230 7 100 chrY 2346316 2346333 -13556222 - ID_B1 SINE B4 -10 214 79 3 602 186 71 0 0 chrY 2346442 2346470 -13556085 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 602 1603 146 57 93 chrY 2346601 2346934 -13555621 - ORR1A4 LTR MaLR -8 321 1 3 602 6456 191 79 45 chrY 2347529 2348622 -13553933 + RLTR21 LTR ERVK 1 1184 -388 3 602 576 29 0 0 chrY 2348622 2348692 -13553863 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 3 602 6456 191 79 45 chrY 2348692 2349118 -13553437 + RLTR21 LTR ERVK 1185 1572 0 3 602 3695 23 2 0 chrY 2349426 2349821 -13552734 - MTA_Mm LTR MaLR 0 396 1 3 602 9493 39 6 2 chrY 2349821 2350915 -13551640 - MTA_Mm-int LTR MaLR 0 1098 1 3 602 3641 25 5 0 chrY 2350915 2351309 -13551246 - MTA_Mm LTR MaLR 0 396 1 3 602 389 306 44 74 chrY 2353583 2353812 -13548743 - RMER12 LTR ERVK 0 1322 1101 3 602 5101 87 51 20 chrY 2354071 2354318 -13548237 - RLTR22_Mus LTR ERVK -997 811 570 3 602 2015 135 76 83 chrY 2354318 2354714 -13547841 + RLTR9C LTR ERVK 1 393 0 3 602 5101 87 51 20 chrY 2354714 2355253 -13547302 - RLTR22_Mus LTR ERVK -1239 569 1 3 602 277 299 109 86 chrY 2355602 2355906 -13546649 - ETnERV3-int LTR ERVK -361 5447 5137 3 602 1035 128 7 0 chrY 2356204 2356345 -13546210 - B1_Mus1 SINE Alu -5 143 2 3 602 1328 35 18 12 chrY 2356992 2357163 -13545392 + L1Md_F3 LINE L1 6413 6584 0 3 602 491 141 36 100 chrY 2357651 2357761 -13544794 + MT2B LTR ERVL 155 257 -344 3 602 1061 74 0 0 chrY 2357663 2357798 -13544757 + B1_Mus1 SINE Alu 6 140 -8 3 602 30 0 0 0 chrY 2357812 2357842 -13544713 + AT_rich Low_complexity Low_complexity 1 30 0 3 602 2473 62 33 0 chrY 2357842 2358148 -13544407 - L1_Mus1 LINE L1 0 6567 6252 3 602 618 14 0 0 chrY 2358173 2358244 -13544311 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 603 506 346 39 29 chrY 2359683 2359990 -13542565 - RLTR4_MM-int LTR ERV1 -6821 780 471 3 603 248 70 0 23 chrY 2361137 2361181 -13541374 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 3 603 1403 45 6 0 chrY 2361454 2361633 -13540922 + (TAAAG)n Simple_repeat Simple_repeat 1 180 0 3 603 4931 88 26 10 chrY 2361775 2362460 -13540095 + L1_Mus3 LINE L1 5942 6637 -1 3 603 760 128 28 7 chrY 2363649 2363791 -13538764 - Lx LINE L1 -8 6646 6502 3 603 1096 281 58 72 chrY 2364519 2364948 -13537607 - BGLII_B LTR ERVK -18 423 1 3 603 1934 148 20 11 chrY 2364950 2365306 -13537249 + Lx4B LINE L1 5091 5449 -428 3 603 297 245 79 30 chrY 2365309 2365410 -13537145 - RLTR23 LTR ERV1 0 430 325 3 603 4430 217 67 41 chrY 2365808 2366456 -13536099 + Lx4B LINE L1 5449 6125 -933 3 603 543 16 0 0 chrY 2366456 2366520 -13536035 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 603 4430 242 26 97 chrY 2366520 2367561 -13534994 + Lx4B LINE L1 6126 7058 0 3 603 2484 151 60 9 chrY 2367615 2368035 -13534520 + BGLII_B LTR ERVK 1 441 0 3 603 1111 122 0 0 chrY 2368072 2368220 -13534335 + B1_Mus1 SINE Alu 1 148 0 3 603 6196 107 1 10 chrY 2368223 2369134 -13533421 - MusHAL1 LINE L1 -526 2186 1284 3 603 11336 113 26 12 chrY 2369130 2371127 -13531428 + L1_Mus1 LINE L1 4180 6514 -483 3 603 4097 174 9 18 chrY 2371126 2371910 -13530645 + Lx4B LINE L1 4952 5747 -1311 3 603 495 0 0 0 chrY 2371910 2371965 -13530590 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 603 1065 207 245 40 chrY 2371965 2372290 -13530265 + Lx4B LINE L1 5748 6162 -896 3 603 236 53 26 0 chrY 2372517 2372555 -13530000 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 603 348 64 0 0 chrY 2373035 2373082 -13529473 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 603 792 0 0 0 chrY 2373617 2373705 -13528850 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 603 21 0 0 0 chrY 2374279 2374300 -13528255 + AT_rich Low_complexity Low_complexity 1 21 0 3 603 292 73 55 0 chrY 2374498 2374553 -13528002 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 3 603 968 83 0 0 chrY 2375586 2375718 -13526837 - C573_MM Other Other -390 132 1 3 603 1052 249 70 64 chrY 2376242 2376599 -13525956 + Lx8 LINE L1 7113 7471 -2 3 603 636 121 20 0 chrY 2376687 2376786 -13525769 + L1_Mur2 LINE L1 5351 5451 -426 3 603 306 271 85 79 chrY 2376806 2376970 -13525585 - RLTR23 LTR ERV1 -19 411 247 3 603 3970 210 42 19 chrY 2377293 2377952 -13524603 + Lx5 LINE L1 5449 6126 -924 3 603 1203 72 0 0 chrY 2377952 2378132 -13524423 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 603 3970 221 22 42 chrY 2378132 2378587 -13523968 + Lx5 LINE L1 6127 6570 -480 3 603 907 260 39 71 chrY 2378588 2378924 -13523631 + Lx5 LINE L1 6720 7044 -6 3 603 1167 214 32 25 chrY 2378964 2379246 -13523309 + BGLII_B LTR ERVK 3 286 -155 3 603 3500 127 46 172 chrY 2379389 2379786 -13522769 - L1_Mur2 LINE L1 -3419 2458 2155 3 603 1129 89 0 20 chrY 2379786 2379935 -13522620 - B1_Mus1 SINE Alu 0 148 3 3 603 3500 127 46 172 chrY 2379935 2380515 -13522040 - L1_Mur2 LINE L1 -3723 2154 1604 3 603 4386 183 38 116 chrY 2380517 2380852 -13521703 - RLTR21 LTR ERVK -12 1560 1252 3 603 699 120 0 0 chrY 2380852 2380969 -13521586 + (CATA)n Simple_repeat Simple_repeat 2 118 0 3 603 4386 183 38 116 chrY 2380969 2381888 -13520667 - RLTR21 LTR ERVK -321 1251 404 3 603 570 71 0 0 chrY 2382439 2382523 -13520032 + (TCTCTG)n Simple_repeat Simple_repeat 6 89 0 3 603 630 0 0 0 chrY 2382530 2382600 -13519955 + (TAAA)n Simple_repeat Simple_repeat 2 71 0 3 603 522 273 7 59 chrY 2383466 2383618 -13518937 + B1F2 SINE Alu 1 144 -5 3 603 21 36 0 0 chrY 2383653 2383681 -13518874 + AT_rich Low_complexity Low_complexity 1 28 0 3 603 518 245 258 24 chrY 2384776 2384943 -13517612 - B3 SINE B2 -10 206 1 3 603 580 314 0 31 chrY 2385267 2385428 -13517127 + B4 SINE B4 132 287 -5 3 603 696 285 87 29 chrY 2385571 2385882 -13516673 - Lx7 LINE L1 -267 7429 7101 3 603 714 53 0 0 chrY 2386098 2386193 -13516362 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 603 712 124 232 65 chrY 2386648 2386803 -13515752 - B2_Mm2 SINE B2 -14 181 1 3 603 1153 66 0 0 chrY 2387463 2387600 -13514955 + B1_Mus2 SINE Alu 1 137 -10 3 603 201 146 0 0 chrY 2387624 2387672 -13514883 + (A)n Simple_repeat Simple_repeat 1 48 0 3 603 399 105 11 44 chrY 2388848 2388938 -13513617 + CT-rich Low_complexity Low_complexity 6 92 0 3 603 808 93 0 69 chrY 2388963 2389258 -13513297 + CT-rich Low_complexity Low_complexity 1 274 0 3 603 1366 28 0 22 chrY 2389265 2389446 -13513109 + (TCTCCC)n Simple_repeat Simple_repeat 4 180 0 3 603 21 0 0 0 chrY 2389570 2389591 -13512964 + GC_rich Low_complexity Low_complexity 1 21 0 3 603 691 234 104 50 chrY 2390137 2390339 -13512216 - B3 SINE B2 0 216 4 3 603 215 225 0 0 chrY 2390644 2390684 -13511871 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 603 660 204 50 50 chrY 2391734 2391935 -13510620 - Lx9 LINE L1 -74 7570 7370 3 603 29 60 0 0 chrY 2393175 2393225 -13509330 + AT_rich Low_complexity Low_complexity 1 50 0 3 603 24 53 0 0 chrY 2393496 2393534 -13509021 + AT_rich Low_complexity Low_complexity 1 38 0 3 603 940 171 0 7 chrY 2394306 2394453 -13508102 + B1_Mus1 SINE Alu 1 146 -2 3 603 618 146 0 0 chrY 2394469 2394579 -13507976 + (GA)n Simple_repeat Simple_repeat 1 110 0 3 603 458 119 35 12 chrY 2395790 2395875 -13506680 - B2_Mm2 SINE B2 -7 188 102 3 603 35 24 0 0 chrY 2395878 2395920 -13506635 + AT_rich Low_complexity Low_complexity 1 42 0 3 603 282 225 90 0 chrY 2395977 2396066 -13506489 - L1M3 LINE L1 -474 5706 5610 3 603 242 204 122 0 chrY 2396302 2396351 -13506204 + B4 SINE B4 155 209 -83 3 603 324 149 22 33 chrY 2396498 2396588 -13505967 + CT-rich Low_complexity Low_complexity 1 89 0 3 603 914 200 34 17 chrY 2396690 2397353 -13505202 + CT-rich Low_complexity Low_complexity 1 674 0 3 603 382 138 0 36 chrY 2397367 2397450 -13505105 + C-rich Low_complexity Low_complexity 1 80 0 3 603 908 113 11 28 chrY 2397467 2397649 -13504906 + CT-rich Low_complexity Low_complexity 2 180 0 3 603 369 149 0 0 chrY 2397661 2397728 -13504827 + (TTTC)n Simple_repeat Simple_repeat 4 70 0 3 603 864 144 61 0 chrY 2397729 2397861 -13504694 - B1_Mus2 SINE Alu -6 141 2 3 603 896 340 71 68 chrY 2398943 2400069 -13502486 - MMERGLN-int LTR ERV1 -3334 4222 3092 3 603 3160 133 39 92 chrY 2400069 2400667 -13501888 + RMER2 LTR ERV1 2 567 0 3 603 896 340 71 68 chrY 2400667 2400775 -13501780 - MMERGLN-int LTR ERV1 -4465 3091 2984 3 603 307 325 94 47 chrY 2400883 2401243 -13501312 - MMERGLN-int LTR ERV1 -5884 1672 1151 3 603 188 233 94 62 chrY 2401970 2402034 -13500521 - MIR SINE MIR -111 97 32 3 603 978 191 21 16 chrY 2402288 2402479 -13500076 - RLTR23 LTR ERV1 -3 427 236 3 603 1037 141 0 6 chrY 2402723 2402902 -13499653 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 603 218 57 57 0 chrY 2402902 2402937 -13499618 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 3 603 234 0 0 0 chrY 2402942 2402968 -13499587 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 3 603 872 124 0 30 chrY 2403216 2403349 -13499206 - B1_Mus2 SINE Alu -10 137 9 3 603 531 230 7 100 chrY 2403349 2403366 -13499189 - ID_B1 SINE B4 -10 214 79 3 603 186 71 0 0 chrY 2403475 2403503 -13499052 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 603 1603 146 57 93 chrY 2403634 2403967 -13498588 - ORR1A4 LTR MaLR -8 321 1 3 603 6478 190 79 45 chrY 2404562 2405655 -13496900 + RLTR21 LTR ERVK 1 1184 -388 3 603 684 24 0 0 chrY 2405655 2405737 -13496818 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 3 603 6478 190 79 45 chrY 2405737 2406163 -13496392 + RLTR21 LTR ERVK 1185 1572 0 3 603 3695 23 2 0 chrY 2406471 2406866 -13495689 - MTA_Mm LTR MaLR 0 396 1 3 603 9493 39 6 2 chrY 2406866 2407960 -13494595 - MTA_Mm-int LTR MaLR 0 1098 1 3 603 3641 25 5 0 chrY 2407960 2408354 -13494201 - MTA_Mm LTR MaLR 0 396 1 3 603 389 306 44 74 chrY 2410628 2410857 -13491698 - RMER12 LTR ERVK 0 1322 1101 3 603 5101 87 51 20 chrY 2411116 2411363 -13491192 - RLTR22_Mus LTR ERVK -997 811 570 3 603 2015 135 76 83 chrY 2411363 2411759 -13490796 + RLTR9C LTR ERVK 1 393 0 3 603 5101 87 51 20 chrY 2411759 2412298 -13490257 - RLTR22_Mus LTR ERVK -1239 569 1 3 603 277 299 109 86 chrY 2412647 2412951 -13489604 - ETnERV3-int LTR ERVK -361 5447 5137 3 603 1035 128 7 0 chrY 2413249 2413390 -13489165 - B1_Mus1 SINE Alu -5 143 2 4 603 1328 35 18 12 chrY 2414037 2414208 -13488347 + L1Md_F3 LINE L1 6413 6584 0 4 603 491 141 36 100 chrY 2414696 2414806 -13487749 + MT2B LTR ERVL 155 257 -344 4 603 1061 74 0 0 chrY 2414708 2414843 -13487712 + B1_Mus1 SINE Alu 6 140 -8 4 603 29 0 0 0 chrY 2414857 2414886 -13487669 + AT_rich Low_complexity Low_complexity 1 29 0 4 603 2472 62 33 0 chrY 2414886 2415192 -13487363 - L1_Mus1 LINE L1 0 6567 6252 4 603 369 0 0 0 chrY 2415217 2415258 -13487297 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 603 492 307 33 65 chrY 2416733 2417008 -13485547 - MuRRS4-int LTR ERV1 -4397 666 401 4 603 248 70 0 23 chrY 2418151 2418195 -13484360 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 4 603 1253 0 20 0 chrY 2418465 2418612 -13483943 + (TAAAG)n Simple_repeat Simple_repeat 4 153 0 4 603 4836 95 29 9 chrY 2418747 2419429 -13483126 + L1_Mus3 LINE L1 5942 6637 -1 4 603 747 135 28 7 chrY 2420619 2420761 -13481794 - Lx LINE L1 -8 6646 6502 4 603 1083 284 58 72 chrY 2421489 2421918 -13480637 - BGLII_B LTR ERVK -18 423 1 4 603 1934 148 20 11 chrY 2421920 2422276 -13480279 + Lx5 LINE L1 5091 5449 -428 4 603 297 245 79 30 chrY 2422279 2422380 -13480175 - RLTR23 LTR ERV1 0 430 325 4 603 4883 212 77 30 chrY 2422778 2423426 -13479129 + Lx5 LINE L1 5449 6124 -926 4 603 714 24 0 0 chrY 2423426 2423510 -13479045 + (TC)n Simple_repeat Simple_repeat 2 85 0 4 603 447 128 0 0 chrY 2423511 2423597 -13478958 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 603 4883 229 50 67 chrY 2423597 2424543 -13478012 + Lx5 LINE L1 6125 7050 0 4 603 2484 151 60 9 chrY 2424597 2425017 -13477538 + BGLII_B LTR ERVK 1 441 0 4 603 1111 122 0 0 chrY 2425054 2425202 -13477353 + B1_Mus1 SINE Alu 1 148 0 4 603 6207 105 1 10 chrY 2425205 2426116 -13476439 - MusHAL1 LINE L1 -526 2186 1284 4 603 11157 113 31 12 chrY 2426112 2428099 -13474456 + L1_Mus1 LINE L1 4180 6514 -483 4 603 4077 176 9 18 chrY 2428098 2428882 -13473673 + Lx4B LINE L1 4952 5747 -1311 4 603 495 0 0 0 chrY 2428882 2428937 -13473618 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 603 1065 207 245 40 chrY 2428937 2429262 -13473293 + Lx4B LINE L1 5748 6162 -896 4 603 236 53 26 0 chrY 2429489 2429527 -13473028 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 603 348 64 0 0 chrY 2430007 2430054 -13472501 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 603 1017 25 0 0 chrY 2430591 2430711 -13471844 + (TC)n Simple_repeat Simple_repeat 2 121 0 4 603 292 73 55 0 chrY 2431503 2431558 -13470997 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 4 603 968 83 0 0 chrY 2432591 2432723 -13469832 - C573_MM Other Other -390 132 1 4 603 1036 243 73 67 chrY 2433247 2433604 -13468951 + Lx8 LINE L1 7113 7471 -2 4 603 636 121 20 0 chrY 2433692 2433791 -13468764 + L1_Mur2 LINE L1 5351 5451 -426 4 603 306 271 85 79 chrY 2433811 2433975 -13468580 - RLTR23 LTR ERV1 -19 411 247 4 603 4110 207 47 12 chrY 2434298 2434954 -13467601 + Lx5 LINE L1 5449 6119 -931 4 603 693 98 0 0 chrY 2434954 2435066 -13467489 + (TG)n Simple_repeat Simple_repeat 2 113 0 4 603 4110 213 36 24 chrY 2435066 2435494 -13467061 + Lx5 LINE L1 6120 6570 -480 4 603 899 267 36 72 chrY 2435495 2435826 -13466729 + Lx5 LINE L1 6720 7038 -12 4 603 357 62 0 0 chrY 2435828 2435876 -13466679 + (CAA)n Simple_repeat Simple_repeat 2 49 0 4 603 2041 196 16 27 chrY 2435902 2436343 -13466212 + BGLII_B LTR ERVK 6 441 0 4 603 470 260 25 43 chrY 2436351 2436387 -13466168 + ID_B1 SINE B4 67 223 0 4 603 963 65 8 0 chrY 2436387 2436511 -13466044 + B1_Mus1 SINE Alu 24 148 0 4 603 5299 135 10 29 chrY 2436519 2437436 -13465119 - MusHAL1 LINE L1 -530 2182 1284 4 603 9820 136 20 12 chrY 2437432 2439560 -13462995 + L1_Mus1 LINE L1 4180 6324 -243 4 603 4389 179 12 60 chrY 2439559 2440342 -13462213 + Lx5 LINE L1 4952 5727 -150 4 603 216 0 0 0 chrY 2440342 2440366 -13462189 + (CG)n Simple_repeat Simple_repeat 2 25 0 4 603 378 0 0 0 chrY 2440366 2440407 -13462148 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 603 4389 179 12 60 chrY 2440407 2440439 -13462116 + Lx5 LINE L1 5728 5731 -146 4 603 258 81 0 0 chrY 2440439 2440476 -13462079 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 603 4389 186 32 86 chrY 2440476 2440844 -13461711 + Lx5 LINE L1 5732 6108 -942 4 603 1032 190 10 20 chrY 2440864 2441068 -13461487 + RLTR1D LTR ERV1 62 263 -342 4 603 2494 63 16 0 chrY 2441066 2441385 -13461170 - IAPEY_LTR LTR ERVK -8 377 54 4 603 2487 96 28 28 chrY 2441384 2441748 -13460807 + RLTR1D LTR ERV1 226 589 -16 4 603 890 194 13 73 chrY 2441764 2441998 -13460557 + Lx5 LINE L1 6105 6324 -726 4 603 617 98 0 19 chrY 2442443 2442547 -13460008 + (TTTTG)n Simple_repeat Simple_repeat 2 103 0 4 603 3239 139 21 11 chrY 2442938 2443460 -13459095 - RLTR1D LTR ERV1 -17 588 62 4 603 528 68 0 0 chrY 2443610 2443683 -13458872 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 603 303 28 0 0 chrY 2444195 2444231 -13458324 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 603 1615 128 50 108 chrY 2444786 2444888 -13457667 + ORR1A2 LTR MaLR 1 107 -220 4 603 583 67 0 32 chrY 2444888 2444981 -13457574 + L1_Mus3 LINE L1 6548 6637 -1 4 603 1615 128 50 108 chrY 2444981 2445220 -13457335 + ORR1A2 LTR MaLR 108 322 -5 4 603 297 100 0 0 chrY 2445279 2445329 -13457226 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 603 409 204 13 0 chrY 2445329 2445481 -13457074 + GA-rich Low_complexity Low_complexity 1 154 0 4 603 206 229 16 0 chrY 2447107 2447168 -13455387 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 603 2917 227 29 47 chrY 2448727 2449983 -13452572 + L1_Mur3 LINE L1 753 1980 -3900 4 603 340 238 59 12 chrY 2450140 2450225 -13452330 - B4A SINE B4 -201 91 3 4 603 4708 170 40 27 chrY 2450708 2452050 -13450505 + Lx2B LINE L1 5316 6674 -326 4 603 4382 171 18 18 chrY 2452438 2453148 -13449407 - RLTR45-int LTR ERVK -203 7203 6494 4 603 305 287 10 19 chrY 2453251 2453354 -13449201 - RNERVK23-int LTR ERVK -463 7754 7653 4 603 1053 103 0 0 chrY 2453646 2453802 -13448753 - RLTR13D5 LTR ERVK -577 446 291 4 603 5945 157 77 92 chrY 2453840 2455262 -13447293 - RLTR45-int LTR ERVK -1173 6071 4672 4 603 2879 86 20 5 chrY 2455250 2455648 -13446907 - ETnERV2-int LTR ERVK -1644 5762 5359 4 603 2144 137 23 0 chrY 2455659 2455966 -13446589 - ETnERV2-int LTR ERVK -2738 4668 4355 4 603 7134 34 4 14 chrY 2455966 2457615 -13444940 + L1Md_A LINE L1 416 2045 -3838 4 603 1299 253 77 56 chrY 2457829 2458311 -13444244 + L1_Mur3 LINE L1 38 529 -7199 4 603 922 190 97 39 chrY 2458325 2458583 -13443972 + L1_Mur3 LINE L1 626 898 -6830 4 603 3417 208 62 45 chrY 2458578 2459794 -13442761 + L1_Mur3 LINE L1 1086 2236 -3641 4 603 611 133 0 19 chrY 2459791 2459898 -13442657 + L1Md_F LINE L1 225 329 -6190 4 603 1874 172 38 9 chrY 2459896 2460237 -13442318 + L1Md_F LINE L1 204 554 -5965 4 603 616 173 29 45 chrY 2460237 2460394 -13442161 + B2_Mm2 SINE B2 35 190 -5 4 603 1263 83 0 0 chrY 2461249 2461517 -13441038 + (TTC)n Simple_repeat Simple_repeat 1 268 0 4 603 191 170 21 0 chrY 2462019 2462066 -13440489 + G-rich Low_complexity Low_complexity 4 51 0 4 603 438 20 0 0 chrY 2463738 2463789 -13438766 + (CCAA)n Simple_repeat Simple_repeat 1 51 0 4 603 261 347 20 50 chrY 2464068 2464168 -13438387 + B3A SINE B2 14 110 -88 4 603 534 104 0 0 chrY 2464186 2464282 -13438273 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 603 300 53 0 0 chrY 2464287 2464325 -13438230 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 603 351 339 14 84 chrY 2464337 2464479 -13438076 - B4 SINE B4 -143 149 18 4 603 225 288 0 88 chrY 2464409 2464489 -13438066 - ID4 SINE ID 0 83 11 4 603 523 281 33 0 chrY 2464586 2464707 -13437848 - ID_B1 SINE B4 -9 215 91 4 603 239 355 13 94 chrY 2465293 2465442 -13437113 - B4A SINE B4 -153 139 3 4 603 230 253 191 12 chrY 2465691 2465775 -13436780 + B1F SINE Alu 6 104 -45 4 603 5007 133 38 7 chrY 2466022 2466795 -13435760 + L1Md_F2 LINE L1 5783 6579 -3 4 603 310 266 89 0 chrY 2466815 2466894 -13435661 + B1F SINE Alu 3 88 -61 4 603 642 72 0 0 chrY 2466920 2467017 -13435538 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 603 201 74 0 0 chrY 2467021 2467048 -13435507 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 4 603 287 276 13 65 chrY 2467156 2467311 -13435244 + GA-rich Low_complexity Low_complexity 4 150 0 4 603 21 0 0 0 chrY 2468863 2468884 -13433671 + AT_rich Low_complexity Low_complexity 1 21 0 4 603 702 281 25 76 chrY 2469197 2469513 -13433042 + RLTR18 LTR ERVK 17 316 -300 4 603 302 257 128 10 chrY 2469599 2469701 -13432854 + RLTR18B LTR ERVK 227 340 -172 4 603 189 0 0 0 chrY 2469723 2469744 -13432811 + (A)n Simple_repeat Simple_repeat 1 21 0 4 603 297 0 0 0 chrY 2470079 2470112 -13432443 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 603 323 188 109 0 chrY 2470533 2470597 -13431958 - B1_Mur4 SINE Alu -57 93 23 4 603 555 16 0 0 chrY 2470674 2470738 -13431817 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 603 704 236 0 0 chrY 2470739 2470862 -13431693 - B3 SINE B2 -93 123 1 4 603 686 261 82 5 chrY 2471355 2471551 -13431004 - URR1A DNA MER1_type -14 212 2 4 603 257 279 151 32 chrY 2471706 2471832 -13430723 - MLT1D LTR MaLR -14 491 351 4 603 592 232 92 55 chrY 2472003 2472167 -13430388 + MTD LTR MaLR 2 171 -248 4 603 257 53 17 51 chrY 2472795 2472854 -13429701 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 4 603 181 172 0 49 chrY 2473823 2473884 -13428671 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 4 603 683 228 0 16 chrY 2473885 2474014 -13428541 - B1_Mur4 SINE Alu -18 132 6 4 603 256 71 68 41 chrY 2474041 2474114 -13428441 + T-rich Low_complexity Low_complexity 5 79 0 4 603 878 159 50 7 chrY 2474122 2474261 -13428294 - B1_Mm SINE Alu -2 145 1 4 603 222 284 83 167 chrY 2475775 2476003 -13426552 + B4 SINE B4 84 292 0 4 603 296 281 97 24 chrY 2476002 2476126 -13426429 + MER2B DNA MER2_type 195 327 -9 4 603 947 257 34 143 chrY 2476658 2477076 -13425479 + ORR1D1 LTR MaLR 3 374 0 5 603 1476 196 70 10 chrY 2477230 2477544 -13425011 + ORR1B1 LTR MaLR 62 394 0 5 603 1790 150 9 65 chrY 2477568 2477904 -13424651 + ORR1A2 LTR MaLR 3 319 -8 5 603 270 95 0 0 chrY 2478573 2478615 -13423940 + (CAA)n Simple_repeat Simple_repeat 1 42 0 5 603 24 85 0 0 chrY 2478725 2478784 -13423771 + AT_rich Low_complexity Low_complexity 1 59 0 5 603 2543 205 203 45 chrY 2479687 2480469 -13422086 - RMER17A2 LTR ERVK 0 906 1 5 603 312 165 0 45 chrY 2480788 2480877 -13421678 + GA-rich Low_complexity Low_complexity 5 89 0 5 603 338 274 13 27 chrY 2480890 2480904 -13421651 + (CAGAGA)n Simple_repeat Simple_repeat 2 15 0 5 603 947 93 0 7 chrY 2480904 2481045 -13421510 + (GAA)n Simple_repeat Simple_repeat 1 140 0 5 603 338 274 13 27 chrY 2481045 2481180 -13421375 + (CAGAGA)n Simple_repeat Simple_repeat 4 136 0 5 603 320 0 25 0 chrY 2481831 2481871 -13420684 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 603 234 335 114 83 chrY 2481889 2482179 -13420376 - ORR1E LTR MaLR -6 353 55 5 603 225 0 0 0 chrY 2482491 2482516 -13420039 + (CAA)n Simple_repeat Simple_repeat 3 27 0 5 603 297 109 0 0 chrY 2483002 2483048 -13419507 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 5 603 195 42 0 0 chrY 2483525 2483549 -13419006 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 603 431 225 94 123 chrY 2483588 2483938 -13418617 + RLTR15 LTR ERVK 1 340 -19 5 603 5651 141 49 16 chrY 2483968 2484948 -13417607 + RLTR13D5 LTR ERVK 12 1023 0 5 603 1195 7 14 0 chrY 2485173 2485317 -13417238 + (TG)n Simple_repeat Simple_repeat 2 147 0 5 603 237 143 48 0 chrY 2485799 2485862 -13416693 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 603 201 167 62 0 chrY 2485910 2485958 -13416597 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 5 603 274 314 66 38 chrY 2486513 2486619 -13415936 - B4A SINE B4 -127 165 57 5 603 295 217 16 6 chrY 2486665 2486744 -13415811 + L1_Mur1 LINE L1 5360 5437 -440 5 603 27 0 0 0 chrY 2486746 2486773 -13415782 + AT_rich Low_complexity Low_complexity 1 27 0 5 603 1592 252 52 14 chrY 2487098 2487270 -13415285 - Lx3A LINE L1 -25 6956 6774 5 603 1522 0 11 0 chrY 2487270 2487448 -13415107 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 603 1592 252 52 14 chrY 2487448 2487698 -13414857 - Lx3A LINE L1 -208 6773 6518 5 603 1245 14 0 0 chrY 2487841 2487984 -13414571 + (TCTCCC)n Simple_repeat Simple_repeat 6 148 0 5 603 1177 216 4 0 chrY 2488505 2488759 -13413796 + Lx3_Mus LINE L1 6548 6802 -207 5 603 1486 155 8 11 chrY 2488751 2489019 -13413536 - Lx3B LINE L1 -674 6299 6033 5 603 23 92 0 0 chrY 2489046 2489111 -13413444 + AT_rich Low_complexity Low_complexity 1 65 0 5 603 213 314 73 64 chrY 2489184 2489293 -13413262 - PB1D10 SINE Alu -7 110 1 5 603 369 129 32 0 chrY 2489522 2489584 -13412971 + L1_Mus1 LINE L1 6435 6498 -69 5 75 3613 119 15 8 chrY 2489573 2490496 -13412059 + L1VL2 LINE L1 595 1525 -2090 5 604 204 247 0 0 chrY 2491692 2491777 -13410778 + GA-rich Low_complexity Low_complexity 2 86 0 5 604 281 169 26 0 chrY 2491758 2491835 -13410720 + (CAGA)n Simple_repeat Simple_repeat 4 82 0 5 604 284 96 0 37 chrY 2491858 2491912 -13410643 + (GGGAGA)n Simple_repeat Simple_repeat 1 52 0 5 604 225 339 77 17 chrY 2493177 2493294 -13409261 + B1_Mm SINE Alu 24 147 0 5 604 4560 39 0 0 chrY 2493458 2493968 -13408587 + L1Md_T LINE L1 6073 6582 0 5 604 464 200 0 7 chrY 2495222 2495373 -13407182 + GA-rich Low_complexity Low_complexity 1 150 0 5 604 487 279 50 50 chrY 2495955 2496136 -13406419 + B3 SINE B2 35 215 -1 5 604 428 21 0 0 chrY 2496137 2496184 -13406371 + L1Md_T LINE L1 5542 5588 -295 5 604 8942 32 0 1 chrY 2496186 2497175 -13405380 + L1Md_T LINE L1 5595 6582 0 5 604 809 176 143 5 chrY 2497527 2497716 -13404839 + RMER4A LTR ERVK 252 466 0 5 604 425 227 82 0 chrY 2497716 2497813 -13404742 - RMER1C Other Other -219 1123 1019 5 604 3204 13 5 0 chrY 2497813 2498190 -13404365 - MTA_Mm LTR MaLR 0 396 18 5 604 894 92 0 0 chrY 2498227 2498357 -13404198 + (TG)n Simple_repeat Simple_repeat 1 130 0 5 604 273 316 10 10 chrY 2500182 2500278 -13402277 + MTD LTR MaLR 16 111 -310 1 604 533 102 23 0 chrY 2500364 2500452 -13402103 + L1_Mur1 LINE L1 2569 2658 -3228 2 604 389 173 0 0 chrY 2500442 2500517 -13402038 + Lx2 LINE L1 5864 5938 -1059 3 604 858 281 20 55 chrY 2500533 2500876 -13401679 - Lx7 LINE L1 -677 7019 6689 4 604 346 277 31 25 chrY 2500937 2501100 -13401455 - Lx7 LINE L1 -1685 6011 5848 4 604 304 355 0 0 chrY 2501100 2501210 -13401345 + MTD LTR MaLR 102 211 -208 1 604 725 263 25 10 chrY 2501213 2501409 -13401146 + B3 SINE B2 1 199 -17 5 604 297 75 0 0 chrY 2501420 2501460 -13401095 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 604 496 258 103 26 chrY 2501498 2501653 -13400902 + MTD LTR MaLR 193 359 -60 1 604 261 238 25 0 chrY 2501658 2501738 -13400817 + Lx2 LINE L1 6898 6979 -18 7 604 577 170 27 34 chrY 2502183 2502329 -13400226 + Lx LINE L1 6508 6652 -2 8 604 1374 146 51 0 chrY 2502330 2502584 -13399971 + L1_Mus4 LINE L1 6367 6633 -3 9 604 943 158 0 6 chrY 2502715 2502887 -13399668 + CYRA11_Mm Unknown Y-chromosome 1 171 -446 1 604 696 223 81 19 chrY 2502887 2503097 -13399458 - URR1A DNA MER1_type -1 225 3 1 604 1403 134 0 13 chrY 2503098 2503333 -13399222 + CYRA11_Mm Unknown Y-chromosome 386 617 0 1 604 225 326 53 30 chrY 2503249 2503382 -13399173 + MLT1G LTR MaLR 58 193 -398 1 604 575 202 141 51 chrY 2505461 2505638 -13396917 - RMER1C Other Other -18 1324 1132 1 604 666 199 15 0 chrY 2505921 2506057 -13396498 - B1_Mur4 SINE Alu -10 140 3 1 604 236 250 132 0 chrY 2506075 2506151 -13396404 - L1P5 LINE L1 -615 5541 5456 1 604 365 288 98 0 chrY 2506174 2506423 -13396132 - L1P5 LINE L1 -818 5541 5265 1 604 317 309 27 26 chrY 2506732 2506934 -13395621 - L1M2 LINE L1 -1034 5109 4847 1 604 310 318 93 9 chrY 2506971 2507079 -13395476 - PB1D10 SINE Alu 0 117 1 1 604 387 272 43 11 chrY 2506990 2507083 -13395472 - ID_B1 SINE B4 -51 173 78 1 604 631 279 86 49 chrY 2507083 2507255 -13395300 - L1M2 LINE L1 -1230 4913 4742 1 604 965 143 0 13 chrY 2507255 2507404 -13395151 - B1_Mus1 SINE Alu 0 148 2 2 604 631 279 86 49 chrY 2507404 2507720 -13394835 - L1M2 LINE L1 -1402 4741 4407 1 604 421 309 0 113 chrY 2507724 2507848 -13394707 - B1F SINE Alu -7 110 1 2 604 225 369 90 42 chrY 2507848 2507887 -13394668 - B4 SINE B4 -69 219 49 2 604 203 133 12 96 chrY 2507909 2507992 -13394563 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 2 604 218 131 48 16 chrY 2507929 2507991 -13394564 + (TTAA)n Simple_repeat Simple_repeat 2 65 0 2 604 494 282 70 25 chrY 2507994 2508321 -13394234 - L1M2 LINE L1 -1808 4332 3991 1 604 236 148 18 90 chrY 2508331 2508442 -13394113 + (TTATA)n Simple_repeat Simple_repeat 2 104 0 2 604 277 167 20 126 chrY 2508469 2508668 -13393887 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 2 604 290 131 20 116 chrY 2508732 2508943 -13393612 + (TTATA)n Simple_repeat Simple_repeat 1 190 0 2 604 56 93 0 0 chrY 2508999 2509160 -13393395 + AT_rich Low_complexity Low_complexity 1 161 0 2 604 32868 63 3 5 chrY 2509227 2511053 -13391502 - L1Md_F3 LINE L1 -14 6570 4748 2 604 3958 48 4 2 chrY 2511053 2511534 -13391021 + LTRIS_Mm LTR ERV1 1 482 0 2 604 32868 80 7 17 chrY 2511534 2515845 -13386710 - L1Md_F3 LINE L1 -1136 4747 463 2 604 422 247 125 25 chrY 2515879 2516273 -13386282 - L1M2 LINE L1 -2187 3953 3510 1 604 352 123 27 0 chrY 2516273 2516346 -13386209 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 604 216 179 59 12 chrY 2516350 2516435 -13386120 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 604 228 113 48 16 chrY 2516446 2516509 -13386046 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 3 604 545 252 0 0 chrY 2516885 2516996 -13385559 - B1_Mur2 SINE Alu -13 136 26 3 604 198 0 0 0 chrY 2517444 2517466 -13385089 + (TGG)n Simple_repeat Simple_repeat 3 24 0 3 604 250 331 40 67 chrY 2518094 2518243 -13384312 + RSINE1 SINE B4 21 165 0 3 604 443 100 14 0 chrY 2518263 2518333 -13384222 + (TAA)n Simple_repeat Simple_repeat 1 71 0 3 604 240 289 26 0 chrY 2519097 2519173 -13383382 + GA-rich Low_complexity Low_complexity 4 81 0 3 604 626 266 92 5 chrY 2519885 2520070 -13382485 - B3 SINE B2 -14 202 2 3 604 254 217 32 32 chrY 2520186 2520248 -13382307 - MER3 DNA MER1_type -102 107 46 3 604 237 261 79 11 chrY 2522063 2522152 -13380403 + MER33 DNA MER1_type 1 95 -229 4 604 186 43 0 0 chrY 2523407 2523430 -13379125 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 4 604 1065 60 0 0 chrY 2523468 2523618 -13378937 + (CA)n Simple_repeat Simple_repeat 1 150 0 4 604 513 58 0 0 chrY 2524359 2524428 -13378127 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 604 3083 67 5 0 chrY 2525747 2526137 -13376418 - MTA_Mm LTR MaLR -2 394 3 4 604 273 326 22 0 chrY 2526199 2526291 -13376264 - BC1_Mm scRNA scRNA -53 99 6 4 604 330 26 0 0 chrY 2526304 2526343 -13376212 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 604 23 0 0 0 chrY 2527570 2527593 -13374962 + AT_rich Low_complexity Low_complexity 1 23 0 4 604 333 237 31 10 chrY 2528090 2528188 -13374367 + MTD LTR MaLR 1 100 -321 4 604 377 174 35 0 chrY 2528289 2528375 -13374180 + L1_Mur1 LINE L1 2570 2658 -3228 4 604 317 169 0 14 chrY 2528365 2528437 -13374118 + Lx2 LINE L1 5864 5934 -1063 5 604 1060 252 20 44 chrY 2528448 2528789 -13373766 - Lx7 LINE L1 -674 7022 6690 5 604 298 302 51 42 chrY 2528796 2529010 -13373545 - Lx7 LINE L1 -1629 6067 5852 5 604 447 309 0 0 chrY 2529014 2529124 -13373431 + MTD LTR MaLR 102 211 -208 4 604 831 286 10 0 chrY 2529127 2529319 -13373236 + B3 SINE B2 1 194 -22 5 604 219 69 0 0 chrY 2529321 2529350 -13373205 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 604 368 297 147 13 chrY 2529377 2529527 -13373028 + MTD LTR MaLR 178 347 -60 4 604 252 225 22 33 chrY 2529540 2529632 -13372923 + Lx2 LINE L1 6906 6996 -1 5 604 281 198 114 38 chrY 2530063 2530194 -13372361 + Lx LINE L1 6500 6640 -14 5 604 5596 18 1 1 chrY 2530190 2530876 -13371679 + L1Md_A LINE L1 436 1121 -5603 5 604 4423 35 36 8 chrY 2530877 2531595 -13370960 + L1Md_A LINE L1 446 1239 -5380 5 604 33767 42 0 0 chrY 2531561 2535945 -13366610 + L1Md_T LINE L1 1203 5586 -297 5 604 8992 5 0 4 chrY 2535945 2537056 -13365499 + L1Md_T LINE L1 5587 6582 0 5 604 36789 5 0 0 chrY 2537056 2541534 -13361021 + L1Md_A LINE L1 1111 5589 -297 5 604 8994 6 0 0 chrY 2541534 2542530 -13360025 + L1Md_A LINE L1 5590 6585 0 5 604 1552 130 4 4 chrY 2542555 2542817 -13359738 + L1_Mus4 LINE L1 6367 6628 -8 5 604 860 161 0 47 chrY 2542929 2543099 -13359456 + CYRA11_Mm Unknown Y-chromosome 10 171 -446 6 604 676 183 99 47 chrY 2543099 2543132 -13359423 - URR1A DNA MER1_type -1 225 199 6 604 188 111 0 27 chrY 2543132 2543169 -13359386 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 604 676 183 99 47 chrY 2543169 2543347 -13359208 - URR1A DNA MER1_type -28 198 3 6 604 783 152 0 7 chrY 2543348 2543487 -13359068 + CYRA11_Mm Unknown Y-chromosome 386 523 -94 6 604 1962 158 58 32 chrY 2543497 2543886 -13358669 - RLTR44A LTR ERVK -6 480 1 6 604 13296 110 126 37 chrY 2543886 2546427 -13356128 - RLTR44-int LTR ERVK 0 2812 47 6 604 861 163 0 28 chrY 2546427 2546604 -13355951 - RLTR44-int LTR ERVK -2598 214 43 6 604 953 241 16 39 chrY 2546596 2546957 -13355598 - RLTR45-int LTR ERVK -291 6953 6675 6 604 413 287 21 19 chrY 2547047 2547290 -13355265 - RLTR45-int LTR ERVK -1462 5080 4869 6 604 588 302 30 23 chrY 2547352 2548029 -13354526 - RLTR45-int LTR ERVK -3228 4353 3268 6 604 726 281 59 46 chrY 2548081 2548539 -13354016 - RLTR45-int LTR ERVK -3838 2704 2241 6 604 287 239 43 43 chrY 2548789 2548881 -13353674 - RLTR10-int LTR ERVK -1578 409 318 6 604 599 225 187 58 chrY 2548897 2549138 -13353417 - RLTR10A LTR ERVK 0 411 140 6 604 856 222 21 17 chrY 2549200 2549434 -13353121 - RLTR44-int LTR ERVK -2576 236 2 6 604 1920 182 58 5 chrY 2549445 2549821 -13352734 - RLTR44A LTR ERVK -9 396 1 6 604 462 177 10 30 chrY 2549821 2549919 -13352636 + CYRA11_Mm Unknown Y-chromosome 522 617 0 6 604 1080 101 21 82 chrY 2550205 2550399 -13352156 + RLTR45 LTR ERVK 301 482 0 6 604 4108 70 107 20 chrY 2550399 2551036 -13351519 + RLTR45-int LTR ERVK 1 692 -6552 6 604 1084 51 0 0 chrY 2551337 2551475 -13351080 + RLTR45-int LTR ERVK 681 818 -6426 6 604 10853 43 52 6 chrY 2552259 2554066 -13348489 + RLTR45-int LTR ERVK 1322 3212 -4032 6 604 3758 74 35 25 chrY 2554047 2554643 -13347912 + RLTR45-int LTR ERVK 3385 3986 -3258 6 604 7788 44 6 6 chrY 2554636 2555644 -13346911 + RLTR45-int LTR ERVK 5065 6072 -1172 6 604 2091 97 10 3 chrY 2555666 2555966 -13346589 + RLTR13B1 LTR ERVK 207 508 -385 7 604 7202 47 13 3 chrY 2555966 2556869 -13345686 + RLTR45-int LTR ERVK 6333 7244 0 6 604 2545 87 28 3 chrY 2556869 2557225 -13345330 + RLTR45 LTR ERVK 1 365 -117 6 604 250 356 16 73 chrY 2558688 2558812 -13343743 + RSINE1 SINE B4 8 124 -41 7 604 442 239 169 22 chrY 2559039 2559223 -13343332 - RMER1C Other Other 0 1342 1132 7 604 282 56 0 0 chrY 2559478 2559514 -13343041 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 7 604 620 188 37 15 chrY 2559516 2559651 -13342904 - B1_Mur4 SINE Alu -10 140 3 7 604 335 304 74 64 chrY 2559669 2560013 -13342542 - L1M2 LINE L1 -633 5541 5158 7 604 361 279 21 29 chrY 2560287 2560427 -13342128 - L1_Rod LINE L1 -862 4985 4847 7 604 303 279 69 11 chrY 2560464 2560551 -13342004 - PB1D10 SINE Alu 0 117 26 7 604 362 283 43 11 chrY 2560483 2560576 -13341979 - ID_B1 SINE B4 -51 173 78 7 604 576 294 71 48 chrY 2560576 2560756 -13341799 - L1M2 LINE L1 -1230 4913 4746 7 604 883 178 0 14 chrY 2560756 2560904 -13341651 - B1_Mus1 SINE Alu 0 148 3 7 604 576 294 71 48 chrY 2560904 2561227 -13341328 - L1M2 LINE L1 -1398 4745 4398 7 604 37 23 0 0 chrY 2561411 2561455 -13341100 + AT_rich Low_complexity Low_complexity 1 44 0 8 604 488 315 55 15 chrY 2561456 2561785 -13340770 - L1M2 LINE L1 -1808 4332 3991 7 604 249 217 6 95 chrY 2561795 2561963 -13340592 + (TTATA)n Simple_repeat Simple_repeat 2 154 0 8 604 213 202 30 50 chrY 2562179 2562278 -13340277 + (TTATA)n Simple_repeat Simple_repeat 3 99 0 8 604 27 103 0 0 chrY 2562289 2562386 -13340169 + AT_rich Low_complexity Low_complexity 1 97 0 8 604 24 67 0 0 chrY 2562442 2562487 -13340068 + AT_rich Low_complexity Low_complexity 1 45 0 8 604 48 53 0 0 chrY 2562519 2562595 -13339960 + AT_rich Low_complexity Low_complexity 1 76 0 8 604 674 261 108 51 chrY 2562596 2563069 -13339486 - L1M2 LINE L1 -2118 4025 3526 7 604 24 53 0 0 chrY 2563142 2563180 -13339375 + AT_rich Low_complexity Low_complexity 1 38 0 8 604 1305 173 76 13 chrY 2564061 2564427 -13338128 + RMER16-int LTR ERVK 249 670 -4736 8 604 218 195 0 0 chrY 2564819 2564860 -13337695 + (CAT)n Simple_repeat Simple_repeat 1 41 0 8 604 476 32 16 0 chrY 2565946 2566008 -13336547 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 604 846 150 0 20 chrY 2566062 2566212 -13336343 - B1_Mus1 SINE Alu 0 148 2 9 604 254 228 180 35 chrY 2566278 2566478 -13336077 + L1MD LINE L1 4939 5167 -979 9 604 569 209 76 23 chrY 2566505 2566637 -13335918 + B1_Mus1 SINE Alu 10 148 0 9 604 367 261 0 0 chrY 2566836 2566928 -13335627 - MurSatRep1 Unknown Unknown -1414 723 632 9 604 2299 140 74 2 chrY 2568127 2568521 -13334034 - L1_Mus2 LINE L1 0 6566 6145 9 604 259 25 0 48 chrY 2568549 2568591 -13333964 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 9 604 639 279 6 12 chrY 2569008 2569175 -13333380 + B2_Mm2 SINE B2 2 167 -28 9 604 474 18 0 0 chrY 2569203 2569258 -13333297 + (TTA)n Simple_repeat Simple_repeat 2 56 0 9 604 285 345 31 118 chrY 2569426 2569469 -13333086 + B3A SINE B2 4 43 -155 9 604 813 116 15 8 chrY 2569469 2569599 -13332956 + B1_Mus1 SINE Alu 5 135 -13 9 604 464 0 18 0 chrY 2569607 2569663 -13332892 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 1 604 346 328 15 36 chrY 2569663 2569786 -13332769 + B3 SINE B2 52 163 -53 9 604 253 251 14 86 chrY 2569964 2570076 -13332479 + B4A SINE B4 49 155 -137 1 604 2538 157 7 11 chrY 2572388 2572851 -13329704 - L1_Mus3 LINE L1 -1 6637 6177 1 604 11246 169 13 22 chrY 2572851 2575210 -13327345 - L1_Mm LINE L1 -165 5718 3383 1 604 1707 133 82 13 chrY 2575241 2575545 -13327010 - IAPLTR4 LTR ERVK -20 325 1 1 604 3886 158 7 21 chrY 2575545 2576255 -13326300 - IAPEY3-int LTR ERVK -20 6801 6102 1 604 682 82 10 0 chrY 2576259 2576356 -13326199 - IAPEY3-int LTR ERVK -4397 3283 3186 1 604 2029 58 0 0 chrY 2576348 2576609 -13325946 - IAPEY3-int LTR ERVK -2635 5045 4785 1 604 1843 82 12 0 chrY 2576606 2576863 -13325692 - IAPEY3-int LTR ERVK -5183 2497 2238 1 604 8752 129 14 24 chrY 2576840 2577583 -13324972 - IAPEY3-int LTR ERVK -5698 1982 1242 1 604 3560 66 25 4 chrY 2577583 2578055 -13324500 + RLTR45 LTR ERVK 1 482 0 1 604 8752 129 14 24 chrY 2578055 2578785 -13323770 - IAPEY3-int LTR ERVK -6439 1241 525 1 604 668 151 50 50 chrY 2578784 2578944 -13323611 - IAPLTR4_I LTR ERVK -1290 180 21 1 604 1585 147 79 57 chrY 2578960 2579277 -13323278 - IAPLTR4 LTR ERVK -21 324 1 1 604 2692 117 4 2 chrY 2579277 2579740 -13322815 - MusHAL1 LINE L1 -535 2177 1714 1 604 1775 172 55 77 chrY 2579740 2580142 -13322413 - RLTR9C LTR ERVK 0 393 1 1 604 384 160 0 0 chrY 2580142 2580217 -13322338 - MMETn-int LTR ERVK -1 7405 7331 1 604 3618 199 25 44 chrY 2580433 2582168 -13320387 - MMETn-int LTR ERVK -3321 4085 2310 1 604 3506 16 149 0 chrY 2582168 2582597 -13319958 - MT2_Mm LTR ERVL 0 493 1 1 604 3460 142 28 14 chrY 2582597 2582894 -13319661 - MMETn-int LTR ERVK -3666 3740 3442 1 604 269 116 0 0 chrY 2583096 2583139 -13319416 - RLTR9C LTR ERVK -334 59 17 1 604 4697 141 69 10 chrY 2583139 2584066 -13318489 - MusHAL1 LINE L1 -995 1717 736 1 604 450 0 0 0 chrY 2584066 2584116 -13318439 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 604 22 0 0 0 chrY 2585378 2585400 -13317155 + AT_rich Low_complexity Low_complexity 1 22 0 1 604 4687 156 37 1 chrY 2585405 2586234 -13316321 - Lx LINE L1 -7 6647 5789 1 604 1466 191 34 3 chrY 2586235 2586592 -13315963 - L1_Mur1 LINE L1 -1125 4761 4394 1 604 7778 172 38 47 chrY 2586587 2589276 -13313279 - L1VL2 LINE L1 -1078 2537 1 1 604 336 341 53 80 chrY 2589485 2589673 -13312882 - B4A SINE B4 -106 186 4 1 604 786 274 20 0 chrY 2589900 2590104 -13312451 - B3 SINE B2 0 216 9 1 604 293 271 58 27 chrY 2590258 2590376 -13312179 - B1F SINE Alu -1 148 21 1 604 964 259 0 5 chrY 2590434 2590640 -13311915 - B3 SINE B2 -11 205 1 1 604 30791 34 1 0 chrY 2590931 2595497 -13307058 - L1Md_T LINE L1 -1 6581 2010 1 604 7336 41 6 0 chrY 2595495 2596432 -13306123 - L1Md_T LINE L1 0 6582 5640 1 604 6272 47 3 23 chrY 2596428 2598045 -13304510 - L1Md_T LINE L1 -3864 2019 441 1 604 721 273 19 42 chrY 2598221 2598435 -13304120 - B3 SINE B2 -3 213 5 1 604 691 250 0 0 chrY 2598476 2598616 -13303939 - B1_Mur2 SINE Alu -9 140 1 1 604 21 36 0 0 chrY 2598622 2598650 -13303905 + AT_rich Low_complexity Low_complexity 1 28 0 1 604 21 36 0 0 chrY 2599631 2599659 -13302896 + AT_rich Low_complexity Low_complexity 1 28 0 1 604 998 8 8 0 chrY 2599726 2599845 -13302710 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 1 604 371 264 131 9 chrY 2599848 2599955 -13302600 - PB1D9 SINE Alu 0 120 1 1 604 3755 170 34 7 chrY 2600133 2600862 -13301693 + L1VL2 LINE L1 74 822 -5513 1 604 1703 50 5 5 chrY 2600862 2601081 -13301474 - RLTR10B2 LTR ERVK 0 365 147 1 604 223 204 0 39 chrY 2602080 2602131 -13300424 + GA-rich Low_complexity Low_complexity 4 52 0 1 604 265 260 19 29 chrY 2602166 2602241 -13300314 + GA-rich Low_complexity Low_complexity 2 77 0 1 604 183 129 0 0 chrY 2602241 2602272 -13300283 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 604 603 0 0 0 chrY 2602272 2602338 -13300217 + (CATA)n Simple_repeat Simple_repeat 4 70 0 1 604 265 260 19 29 chrY 2602338 2602364 -13300191 + polypurine Low_complexity Low_complexity 78 102 0 1 604 573 120 0 0 chrY 2602374 2602466 -13300089 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 604 1794 202 80 10 chrY 2604184 2604570 -13297985 - MTC LTR MaLR 0 421 9 1 604 1507 179 17 108 chrY 2604570 2604932 -13297623 + ORR1A4 LTR MaLR 1 329 0 1 604 966 41 0 0 chrY 2605612 2605735 -13296820 + (CA)n Simple_repeat Simple_repeat 2 124 0 1 604 512 288 36 20 chrY 2606014 2606209 -13296346 + B3A SINE B2 1 198 0 1 604 803 160 7 14 chrY 2607797 2607943 -13294612 + B1_Mm SINE Alu 1 145 -2 1 604 209 118 43 29 chrY 2607944 2608014 -13294541 + A-rich Low_complexity Low_complexity 4 74 0 1 604 618 226 36 14 chrY 2608047 2608186 -13294369 + B1_Mur4 SINE Alu 9 150 0 1 604 191 61 30 0 chrY 2608190 2608223 -13294332 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 604 1059 54 27 0 chrY 2608907 2609054 -13293501 - RLTR44-int LTR ERVK -520 2292 2142 1 604 26 0 0 0 chrY 2609479 2609505 -13293050 + AT_rich Low_complexity Low_complexity 1 26 0 1 604 552 323 39 73 chrY 2609563 2609736 -13292819 - IAPLTR3-int LTR ERVK -1551 5270 5025 1 604 216 67 0 0 chrY 2609736 2609766 -13292789 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 604 552 322 44 72 chrY 2609766 2610244 -13292311 - IAPLTR3-int LTR ERVK -1676 5145 4680 1 604 441 50 50 0 chrY 2610711 2610771 -13291784 - RLTR44-int LTR ERVK -1323 1489 1427 1 604 448 92 0 0 chrY 2610757 2610822 -13291733 - RLTR44-int LTR ERVK -1775 1037 973 1 604 765 122 29 118 chrY 2611006 2611328 -13291227 - RLTR44-int LTR ERVK -1832 980 778 1 604 1983 133 33 3 chrY 2611621 2611893 -13290662 + IAPLTR4 LTR ERVK 1 272 -73 1 604 384 0 54 0 chrY 2611893 2611949 -13290606 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 604 1983 133 33 3 chrY 2611949 2612007 -13290548 + IAPLTR4 LTR ERVK 273 340 -5 1 604 922 182 15 25 chrY 2612010 2612207 -13290348 + IAPLTR3-int LTR ERVK 1 195 -6626 1 604 23350 229 18 14 chrY 2612235 2617626 -13284929 + IAPLTR3-int LTR ERVK 337 5746 -1075 1 604 567 279 25 36 chrY 2617900 2618175 -13284380 + IAPLTR3-int LTR ERVK 5472 5743 -799 1 604 1273 273 11 13 chrY 2618414 2618787 -13283768 + IAPLTR3-int LTR ERVK 5750 6039 -782 1 604 2880 28 0 0 chrY 2618787 2619113 -13283442 + IAPLTR3 LTR ERVK 1 326 0 1 604 12370 43 13 3 chrY 2619113 2620693 -13281862 + IAPLTR3-int LTR ERVK 1 1596 -5225 1 605 3410 14 123 0 chrY 2621822 2622253 -13280302 - MT2_Mm LTR ERVL 0 493 10 1 605 302 0 0 0 chrY 2622255 2622293 -13280262 - MERVL-int LTR ERVL 0 5485 5448 1 605 380 179 46 35 chrY 2622293 2622380 -13280175 - ORR1A3-int LTR MaLR -1323 640 553 1 605 44651 21 5 0 chrY 2622380 2627713 -13274842 - MERVL-int LTR ERVL -125 5360 1 1 605 3518 14 149 0 chrY 2627713 2628142 -13274413 - MT2_Mm LTR ERVL 0 493 1 1 605 486 98 0 0 chrY 2628385 2628467 -13274088 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 605 21 36 0 0 chrY 2629114 2629142 -13273413 + AT_rich Low_complexity Low_complexity 1 28 0 1 605 289 109 0 45 chrY 2629302 2629369 -13273186 - Lx2 LINE L1 0 6997 6934 1 605 732 172 32 6 chrY 2629375 2629533 -13273022 + Lx2 LINE L1 6769 6930 -67 1 605 23 0 0 0 chrY 2631020 2631043 -13271512 + AT_rich Low_complexity Low_complexity 1 23 0 1 605 964 301 48 27 chrY 2632269 2632644 -13269911 + MTD LTR MaLR 22 404 -15 1 605 332 369 5 93 chrY 2633363 2633578 -13268977 - B3A SINE B2 -2 196 1 1 605 2435 161 17 26 chrY 2633718 2634178 -13268377 - Lx3_Mus LINE L1 -6 7003 6548 1 605 326 226 26 0 chrY 2634422 2634537 -13268018 + Lx LINE L1 6516 6633 -21 1 605 522 167 0 0 chrY 2634780 2634888 -13267667 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 605 290 198 9 36 chrY 2635330 2635440 -13267115 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 1 605 2380 101 0 0 chrY 2635745 2636083 -13266472 + ORR1A1 LTR MaLR 1 338 -8 1 605 23 0 0 0 chrY 2636713 2636736 -13265819 + AT_rich Low_complexity Low_complexity 1 23 0 1 605 216 191 0 0 chrY 2636835 2636877 -13265678 + A-rich Low_complexity Low_complexity 2 43 0 1 605 1089 86 0 0 chrY 2637365 2637505 -13265050 + B1_Mus2 SINE Alu 4 143 -4 1 605 281 26 26 0 chrY 2637508 2637546 -13265009 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 605 397 317 45 10 chrY 2637570 2637771 -13264784 + B3 SINE B2 1 208 -8 1 605 203 250 19 57 chrY 2637873 2637979 -13264576 + A-rich Low_complexity Low_complexity 2 103 0 1 605 435 52 0 0 chrY 2638108 2638166 -13264389 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 605 612 0 0 0 chrY 2638166 2638234 -13264321 + (TATG)n Simple_repeat Simple_repeat 2 69 0 1 605 2614 149 24 168 chrY 2638364 2639124 -13263431 + L1VL1 LINE L1 225 874 -5548 1 605 3881 119 87 3 chrY 2639122 2640066 -13262489 + L1_Mus2 LINE L1 5026 6090 -476 1 605 308 22 0 0 chrY 2640066 2640111 -13262444 + L1_Mus2 LINE L1 6522 6566 0 1 605 468 221 36 0 chrY 2640130 2640270 -13262285 + Lx5 LINE L1 3006 3150 -2730 1 605 17359 64 16 19 chrY 2640278 2642793 -13259762 + L1Md_F2 LINE L1 3080 5586 -297 1 605 7557 61 21 4 chrY 2642794 2643769 -13258786 + L1Md_F2 LINE L1 5588 6579 -3 1 605 533 203 8 8 chrY 2643772 2643906 -13258649 + Lx5 LINE L1 3154 3287 -2593 1 605 507 189 61 0 chrY 2643926 2644062 -13258493 + Lx5 LINE L1 5617 5767 -1283 1 605 2365 92 9 0 chrY 2644063 2644391 -13258164 + L1Md_F2 LINE L1 6251 6581 -1 1 605 252 342 38 0 chrY 2644429 2644508 -13258047 + ID4_ SINE ID 1 82 -1 1 605 358 277 0 0 chrY 2644572 2644655 -13257900 + RSINE1 SINE B4 55 137 -28 1 605 1961 212 19 19 chrY 2644764 2645178 -13257377 + MTC LTR MaLR 1 414 -7 1 605 401 311 48 44 chrY 2645187 2645416 -13257139 + Lx5 LINE L1 5905 6134 -1326 1 605 338 281 0 0 chrY 2645416 2645530 -13257025 + Lx5 LINE L1 7332 7445 -15 1 605 1473 238 15 27 chrY 2645906 2646234 -13256321 + RLTR21 LTR ERVK 1 324 -1248 1 605 322 159 14 42 chrY 2646265 2646337 -13256218 + RLTR21 LTR ERVK 552 621 -951 1 605 5797 137 157 2 chrY 2646355 2648219 -13254336 + L1_Mus1 LINE L1 472 2625 -3258 1 605 8166 127 117 2 chrY 2648215 2648596 -13253959 + L1_Mus1 LINE L1 4248 4627 -1256 1 605 246 62 0 0 chrY 2648596 2648628 -13253927 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 605 8166 105 55 2 chrY 2648628 2650395 -13252160 + L1_Mus1 LINE L1 4628 6567 0 1 605 211 211 0 0 chrY 2650398 2650450 -13252105 + A-rich Low_complexity Low_complexity 1 52 0 1 605 832 195 61 154 chrY 2651458 2651803 -13250752 + RLTRETN_Mm LTR ERVK 10 322 0 1 605 1122 8 0 0 chrY 2652207 2652334 -13250221 + (CCCTAA)n Simple_repeat Simple_repeat 4 130 0 1 605 742 209 32 5 chrY 2652388 2652604 -13249951 - L1_Mur2 LINE L1 -423 5454 5233 1 605 1571 51 196 14 chrY 2652616 2652892 -13249663 + IAPLTR4 LTR ERVK 12 337 -8 1 605 434 196 38 38 chrY 2652907 2653013 -13249542 + IAPLTR3-int LTR ERVK 12 117 -6704 1 605 386 175 8 77 chrY 2653013 2653143 -13249412 + IAPLTR3-int LTR ERVK 834 954 -5867 1 605 362 138 0 121 chrY 2653117 2653249 -13249306 + MMERVK10C-int LTR ERVK 837 952 -6629 1 605 933 228 116 74 chrY 2653358 2653830 -13248725 + RMER16-int LTR ERVK 251 819 -4587 1 605 433 220 92 0 chrY 2653835 2653944 -13248611 + RMER16-int LTR ERVK 938 1056 -5081 1 605 9488 81 40 12 chrY 2654064 2655302 -13247253 + RLTR45-int LTR ERVK 2635 4744 -2500 1 605 630 0 0 0 chrY 2655302 2655372 -13247183 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 1 605 9488 78 29 13 chrY 2655372 2655742 -13246813 + RLTR45-int LTR ERVK 4745 5136 -2108 1 605 5834 102 9 5 chrY 2655739 2656615 -13245940 + MMERVK10C-int LTR ERVK 3102 3981 -3600 1 605 1728 184 5 36 chrY 2656860 2657332 -13245223 + MMERVK10C-int LTR ERVK 5189 5745 -1076 1 605 633 259 35 43 chrY 2657576 2657858 -13244697 + IAPLTR3-int LTR ERVK 5466 5745 -797 1 605 5736 200 4 8 chrY 2658109 2659248 -13243307 + IAPLTR3-int LTR ERVK 5750 7297 -383 1 605 1345 67 266 0 chrY 2659248 2659514 -13243041 + IAPLTR4 LTR ERVK 1 337 -8 1 605 788 223 18 18 chrY 2659524 2659743 -13242812 - L1_Mur2 LINE L1 -661 5216 4998 1 605 5991 97 31 40 chrY 2659730 2660413 -13242142 - L1_Mus2 LINE L1 0 6566 5870 1 605 450 0 0 0 chrY 2660413 2660463 -13242092 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 605 5991 101 33 47 chrY 2660463 2660806 -13241749 - L1_Mus2 LINE L1 -14 5869 5548 1 605 1086 139 0 6 chrY 2660837 2661003 -13241552 + B2_Mm2 SINE B2 6 170 -25 2 605 958 148 34 6 chrY 2661026 2661203 -13241352 + B2_Mm2 SINE B2 5 186 -9 2 605 50 90 0 0 chrY 2661530 2661664 -13240891 + AT_rich Low_complexity Low_complexity 1 134 0 2 605 1031 124 0 0 chrY 2662130 2662275 -13240280 - B1_Mus2 SINE Alu -2 145 1 2 605 271 317 39 10 chrY 2662585 2662687 -13239868 + Tigger15a DNA TcMar 230 334 -381 2 605 305 169 123 0 chrY 2662877 2662942 -13239613 + tRNA-Met_ tRNA tRNA 1 73 -3 2 605 1068 115 0 0 chrY 2662981 2663129 -13239426 + B1_Mus1 SINE Alu 1 148 0 2 605 229 309 109 16 chrY 2663226 2663354 -13239201 + Tigger15a DNA TcMar 576 715 0 2 605 680 287 233 23 chrY 2663486 2663885 -13238670 - MER44D DNA MER2_type -71 634 152 2 605 198 250 0 0 chrY 2664169 2664217 -13238338 + MIRc SINE MIR 112 159 -109 2 605 24 53 0 0 chrY 2664342 2664380 -13238175 + AT_rich Low_complexity Low_complexity 1 38 0 2 605 216 418 17 81 chrY 2664400 2664572 -13237983 - RSINE1 SINE B4 -2 163 3 2 605 391 342 71 45 chrY 2664734 2665000 -13237555 + MLT1A0 LTR MaLR 1 273 -92 2 605 207 0 0 0 chrY 2665029 2665052 -13237503 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 605 1047 103 7 0 chrY 2665052 2665188 -13237367 - B1_Mm SINE Alu -9 138 2 2 605 519 17 0 0 chrY 2665537 2665597 -13236958 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 2 605 699 130 196 15 chrY 2665598 2665731 -13236824 - B2_Mm2 SINE B2 -37 158 2 2 605 2029 156 80 46 chrY 2665741 2666131 -13236424 - RLTR9D LTR ERVK 0 403 1 2 605 980 130 7 0 chrY 2666614 2666760 -13235795 - B1_Mus2 SINE Alu 0 147 1 2 605 23 78 0 0 chrY 2666869 2666920 -13235635 + AT_rich Low_complexity Low_complexity 1 51 0 2 605 27 49 0 0 chrY 2668544 2668585 -13233970 + AT_rich Low_complexity Low_complexity 1 41 0 2 605 253 216 0 76 chrY 2668601 2668706 -13233849 + (TTAGGG)n Simple_repeat Simple_repeat 4 100 0 2 605 870 186 17 11 chrY 2668707 2668886 -13233669 + ORR1A3-int LTR MaLR 1437 1616 -347 2 605 613 129 0 19 chrY 2668878 2668981 -13233574 + ORR1A3-int LTR MaLR 1853 1953 -10 2 605 551 134 502 3 chrY 2668991 2669186 -13233369 + ORR1A3 LTR MaLR 1 288 -38 2 605 1667 211 103 28 chrY 2669199 2669706 -13232849 - L1_Mur3 LINE L1 -4022 1858 1314 2 605 540 106 0 0 chrY 2669840 2669934 -13232621 + (TC)n Simple_repeat Simple_repeat 2 95 0 2 605 1185 144 0 5 chrY 2670118 2670306 -13232249 - B2_Mm2 SINE B2 -7 188 2 2 605 813 125 0 0 chrY 2670366 2670486 -13232069 - B1_Mus1 SINE Alu -28 120 1 2 605 535 340 98 44 chrY 2670728 2671094 -13231461 + MTD LTR MaLR 18 403 -16 2 605 1461 328 143 32 chrY 2671156 2672249 -13230306 + ORR1D-int LTR MaLR 67 1235 -135 2 605 1288 81 21 21 chrY 2672249 2672438 -13230117 + B2_Mm2 SINE B2 1 189 -6 2 605 1461 317 90 39 chrY 2672438 2672541 -13230014 + ORR1D-int LTR MaLR 1236 1343 -27 2 605 675 265 65 142 chrY 2672640 2673098 -13229457 - RLTR23 LTR ERV1 0 430 8 2 605 639 57 0 0 chrY 2673185 2673273 -13229282 + (TC)n Simple_repeat Simple_repeat 1 88 0 2 605 266 247 26 13 chrY 2673454 2673532 -13229023 - B1_Mur3 SINE Alu -1 148 70 2 605 1058 84 0 20 chrY 2673542 2673688 -13228867 + B1_Mus1 SINE Alu 1 143 -5 2 605 581 0 0 14 chrY 2673696 2673766 -13228789 + (TAA)n Simple_repeat Simple_repeat 1 69 0 2 605 31155 61 23 8 chrY 2673923 2677243 -13225312 - L1Md_F2 LINE L1 -14 6568 3204 2 605 4580 62 19 11 chrY 2677243 2677668 -13224887 - L1Md_F2 LINE L1 -13 6569 6139 2 605 3607 37 76 2 chrY 2677668 2678127 -13224428 - MT2_Mm LTR ERVL 0 493 1 2 605 4580 62 19 11 chrY 2678127 2678317 -13224238 - L1Md_F2 LINE L1 -444 6138 5949 2 605 31155 61 18 10 chrY 2678317 2679825 -13222730 - L1Md_F2 LINE L1 -2680 3203 1673 2 605 1030 154 97 56 chrY 2679825 2680113 -13222442 + MurSatRep1 Unknown Unknown 1835 2134 -3 2 605 310 276 30 24 chrY 2680146 2680537 -13222018 + MMSAT4 Satellite Satellite 1 393 -5 2 605 734 214 58 36 chrY 2680562 2681183 -13221372 + SYNREP_MM Satellite Satellite 1 634 -3 2 605 4609 160 13 140 chrY 2681196 2682379 -13220176 + L1Md_F LINE L1 178 1209 -5407 2 605 189 0 0 0 chrY 2682379 2682400 -13220155 + (AAATG)n Simple_repeat Simple_repeat 1 21 0 2 605 33735 32 27 18 chrY 2682403 2685998 -13216557 + L1Md_F LINE L1 1225 4913 -970 2 605 245 222 66 53 chrY 2685998 2686074 -13216481 - RMER20A LTR ERVK -254 262 186 2 605 33735 32 27 18 chrY 2686074 2686728 -13215827 + L1Md_F LINE L1 4914 5586 -297 2 605 7876 59 0 0 chrY 2686728 2687724 -13214831 + L1Md_T LINE L1 5587 6582 0 2 605 890 230 35 25 chrY 2687752 2692209 -13210346 + SYNREP_MM Satellite Satellite 1 4501 -20 2 605 835 226 40 33 chrY 2692274 2693680 -13208875 + SYNREP_MM Satellite Satellite 1 1415 -5 2 605 835 226 40 33 chrY 2693745 2695151 -13207404 + SYNREP_MM Satellite Satellite 1 1415 -5 2 605 833 236 31 23 chrY 2695216 2698280 -13204275 + SYNREP_MM Satellite Satellite 1 3086 -5 2 605 790 237 36 27 chrY 2698067 2700455 -13202100 + SYNREP_MM Satellite Satellite 1 2411 -65 2 605 835 233 36 28 chrY 2700242 2702752 -13199803 + SYNREP_MM Satellite Satellite 1 2531 -65 2 605 835 233 36 28 chrY 2702539 2705051 -13197504 + SYNREP_MM Satellite Satellite 1 2531 -65 2 605 835 234 36 27 chrY 2704864 2707347 -13195208 + SYNREP_MM Satellite Satellite 1 2505 -65 2 605 835 233 38 27 chrY 2707134 2710045 -13192510 + SYNREP_MM Satellite Satellite 1 2941 -65 2 605 835 234 34 27 chrY 2709832 2712342 -13190213 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 835 237 32 24 chrY 2712129 2714637 -13187918 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 848 235 32 24 chrY 2714425 2716934 -13185621 + SYNREP_MM Satellite Satellite 1 2528 -65 2 605 835 232 37 29 chrY 2716721 2719230 -13183325 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 835 232 39 30 chrY 2719017 2721526 -13181029 + SYNREP_MM Satellite Satellite 1 2531 -65 2 605 835 234 34 27 chrY 2721313 2723823 -13178732 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 835 234 34 27 chrY 2723610 2726120 -13176435 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 835 234 34 26 chrY 2725907 2728416 -13174139 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 848 235 34 24 chrY 2728203 2730712 -13171843 + SYNREP_MM Satellite Satellite 1 2532 -65 2 605 835 237 32 24 chrY 2730499 2733007 -13169548 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 835 234 35 27 chrY 2732795 2735304 -13167251 + SYNREP_MM Satellite Satellite 1 2528 -65 2 605 835 235 34 27 chrY 2735091 2737601 -13164954 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 835 235 34 27 chrY 2737388 2739898 -13162657 + SYNREP_MM Satellite Satellite 1 2529 -65 2 605 768 235 42 35 chrY 2739711 2741372 -13161183 + SYNREP_MM Satellite Satellite 1 1671 -65 2 605 835 231 39 30 chrY 2741185 2743669 -13158886 + SYNREP_MM Satellite Satellite 1 2505 -65 2 605 848 235 34 25 chrY 2743456 2745966 -13156589 + SYNREP_MM Satellite Satellite 1 2532 -65 2 605 835 231 39 30 chrY 2745779 2748263 -13154292 + SYNREP_MM Satellite Satellite 1 2506 -65 2 605 835 232 37 29 chrY 2748050 2750560 -13151995 + SYNREP_MM Satellite Satellite 1 2529 -65 2 75 835 231 39 30 chrY 2750347 2752857 -13149698 + SYNREP_MM Satellite Satellite 1 2531 -65 2 606 835 235 34 27 chrY 2752644 2755154 -13147401 + SYNREP_MM Satellite Satellite 1 2529 -65 2 606 835 232 39 29 chrY 2754967 2757450 -13145105 + SYNREP_MM Satellite Satellite 1 2505 -65 2 606 835 232 37 29 chrY 2757237 2759746 -13142809 + SYNREP_MM Satellite Satellite 1 2529 -65 2 606 835 232 37 29 chrY 2759533 2762043 -13140512 + SYNREP_MM Satellite Satellite 1 2529 -65 2 606 848 237 38 18 chrY 2761830 2766398 -13136157 + SYNREP_MM Satellite Satellite 1 4657 -65 2 606 879 227 45 32 chrY 2766473 2768935 -13133620 + SYNREP_MM Satellite Satellite 1 2493 -3 2 606 922 229 36 24 chrY 2768974 2777550 -13125005 + SYNREP_MM Satellite Satellite 1 8676 -3 2 606 7197 4 0 0 chrY 2777749 2779049 -13123506 - L1Md_A LINE L1 -199 6383 5084 2 606 1841 5 0 0 chrY 2779049 2779259 -13123296 + L1Md_A LINE L1 6372 6581 -1 2 606 200 215 37 37 chrY 2780585 2780605 -13121950 + A-rich Low_complexity Low_complexity 6 23 0 2 606 834 164 0 33 chrY 2780605 2780740 -13121815 + B1_Mm SINE Alu 1 134 -13 2 606 378 74 0 0 chrY 2780740 2780794 -13121761 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2 606 834 164 0 33 chrY 2780794 2780809 -13121746 + B1_Mm SINE Alu 135 146 -1 2 606 234 164 32 16 chrY 2780809 2780875 -13121680 + (CAAA)n Simple_repeat Simple_repeat 1 67 0 2 606 593 254 0 16 chrY 2780893 2781021 -13121534 + B1_Mur4 SINE Alu 7 132 -18 2 606 246 116 0 0 chrY 2781034 2781077 -13121478 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 2 606 187 79 0 50 chrY 2782112 2782152 -13120403 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 606 448 288 95 35 chrY 2782755 2782924 -13119631 - MTD LTR MaLR -228 191 13 2 606 870 54 0 0 chrY 2783043 2783155 -13119400 + (GA)n Simple_repeat Simple_repeat 1 112 0 2 606 241 318 66 102 chrY 2783749 2783945 -13118610 + MLT1A1 LTR MaLR 21 209 -199 2 606 753 233 86 14 chrY 2784578 2784787 -13117768 + URR1A DNA MER1_type 2 225 -1 2 606 4051 137 6 43 chrY 2785022 2785739 -13116816 + L1Md_F2 LINE L1 5891 6580 -2 2 606 674 253 6 0 chrY 2785970 2786107 -13116448 + B3 SINE B2 2 159 -34 2 606 221 98 0 24 chrY 2786107 2786149 -13116406 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 606 416 281 140 0 chrY 2786149 2786175 -13116380 + B2_Mm1a SINE B2 160 187 -6 2 606 279 266 98 12 chrY 2786192 2786291 -13116264 + B1_Mur4 SINE Alu 1 107 -43 2 606 210 37 0 0 chrY 2786534 2786561 -13115994 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 606 807 80 0 0 chrY 2786587 2786699 -13115856 + (TTTA)n Simple_repeat Simple_repeat 1 112 0 2 606 274 221 23 38 chrY 2786784 2786916 -13115639 + T-rich Low_complexity Low_complexity 2 131 0 2 606 201 39 0 0 chrY 2787054 2787080 -13115475 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 606 183 42 0 0 chrY 2787251 2787275 -13115280 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 606 24 77 0 0 chrY 2787275 2787327 -13115228 + AT_rich Low_complexity Low_complexity 1 52 0 2 606 192 97 0 0 chrY 2787421 2787452 -13115103 + (T)n Simple_repeat Simple_repeat 1 31 0 2 606 180 0 0 0 chrY 2787776 2787796 -13114759 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 2 606 207 69 0 0 chrY 2787914 2787943 -13114612 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 606 197 108 27 0 chrY 2787975 2788012 -13114543 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2 606 216 0 0 0 chrY 2789375 2789399 -13113156 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 606 12976 52 9 13 chrY 2789571 2791356 -13111199 + YREP_Mm Unknown Unknown 1 1777 -35 2 606 613 24 24 0 chrY 2791626 2791709 -13110846 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 2 606 1758 190 25 5 chrY 2791946 2792365 -13110190 + L1_Mur2 LINE L1 4349 4747 -1130 2 606 4158 194 36 13 chrY 2792365 2793208 -13109347 + Lx LINE L1 5783 6644 -10 2 606 258 32 0 0 chrY 2793208 2793239 -13109316 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 606 45 0 0 0 chrY 2793869 2793914 -13108641 + AT_rich Low_complexity Low_complexity 1 45 0 2 606 387 0 0 0 chrY 2794877 2794920 -13107635 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 606 735 299 5 30 chrY 2795007 2795210 -13107345 - B3 SINE B2 -11 205 8 2 606 338 315 137 42 chrY 2795416 2795480 -13107075 - B4A SINE B4 -5 287 229 2 606 701 214 7 0 chrY 2795480 2795625 -13106930 - B1_Mus1 SINE Alu -1 147 2 2 606 338 315 137 42 chrY 2795625 2795822 -13106733 - B4A SINE B4 -64 228 1 2 606 315 105 0 0 chrY 2796053 2796110 -13106445 + (T)n Simple_repeat Simple_repeat 1 57 0 2 606 268 252 73 73 chrY 2796162 2796286 -13106269 - BC1_Mm scRNA scRNA -23 129 6 2 606 3672 81 2 30 chrY 2796545 2797079 -13105476 - MURVY-LTR LTR ERV1 0 519 1 2 606 3559 177 20 8 chrY 2847387 2848154 -13054401 + MusHAL1 LINE L1 1561 2336 -376 2 606 2279 179 43 35 chrY 2848154 2848669 -13053886 + MURVY-LTR LTR ERV1 1 519 0 2 606 748 305 57 91 chrY 2848669 2849250 -13053305 + MuRRS4-int LTR ERV1 3 563 -4500 2 606 2824 305 34 48 chrY 2849247 2851246 -13051309 + MuRRS4-int LTR ERV1 681 2894 -4884 2 606 4561 326 19 40 chrY 2851244 2853416 -13049139 + MuRRS4-int LTR ERV1 2149 4399 -291 2 606 2552 127 131 32 chrY 2853684 2854156 -13048399 + MURVY-LTR LTR ERV1 1 519 0 2 606 7128 173 82 9 chrY 2854159 2855147 -13047408 + L1_Mus2 LINE L1 3536 4630 -1253 2 606 369 17 17 33 chrY 2855147 2855207 -13047348 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 606 7128 173 82 9 chrY 2855207 2855707 -13046848 + L1_Mus2 LINE L1 4631 5133 -750 2 606 2143 134 17 0 chrY 2855719 2856070 -13046485 + L1_Mus2 LINE L1 5627 5983 -583 2 606 1539 184 10 3 chrY 2856070 2856369 -13046186 + L1_Mus2 LINE L1 6337 6637 -1 2 606 22 70 0 0 chrY 2856873 2856916 -13045639 + AT_rich Low_complexity Low_complexity 1 43 0 2 606 189 0 0 0 chrY 2857434 2857455 -13045100 + (CCA)n Simple_repeat Simple_repeat 2 22 0 2 606 330 269 13 13 chrY 2857608 2857687 -13044868 + PB1D10 SINE Alu 1 79 -38 2 606 225 0 0 0 chrY 2858234 2858259 -13044296 + (A)n Simple_repeat Simple_repeat 1 25 0 2 606 237 353 0 105 chrY 2858572 2858686 -13043869 - B3 SINE B2 -7 209 108 3 606 459 107 0 0 chrY 2858828 2858912 -13043643 + (TC)n Simple_repeat Simple_repeat 2 85 0 3 606 282 297 114 26 chrY 2859160 2859274 -13043281 - B3A SINE B2 -48 150 27 3 606 486 0 0 0 chrY 2859286 2859340 -13043215 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3 606 768 138 69 8 chrY 2859342 2859473 -13043082 - B1_Mus1 SINE Alu -8 140 2 3 606 486 88 0 0 chrY 2859641 2859709 -13042846 + (TAA)n Simple_repeat Simple_repeat 1 68 0 3 606 623 213 0 0 chrY 2859784 2859906 -13042649 - B2_Mm2 SINE B2 -72 123 2 3 606 24 67 0 0 chrY 2860108 2860153 -13042402 + AT_rich Low_complexity Low_complexity 1 45 0 3 606 2264 152 27 5 chrY 2860386 2860796 -13041759 + L1_Mus2 LINE L1 6145 6563 -3 3 606 33 25 0 0 chrY 2862200 2862240 -13040315 + AT_rich Low_complexity Low_complexity 1 40 0 3 606 25 31 0 0 chrY 2862326 2862358 -13040197 + AT_rich Low_complexity Low_complexity 1 32 0 3 606 237 128 0 0 chrY 2862891 2862938 -13039617 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 606 4176 185 47 5 chrY 2862940 2863770 -13038785 - Lx LINE L1 -7 6647 5783 3 606 1760 191 30 4 chrY 2863770 2864187 -13038368 - L1_Mur2 LINE L1 -1130 4747 4349 3 606 548 53 13 0 chrY 2864419 2864495 -13038060 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 3 606 13259 49 3 6 chrY 2864765 2866547 -13036008 - YREP_Mm Unknown Unknown -35 1777 1 3 606 219 36 0 0 chrY 2866729 2866757 -13035798 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 606 347 286 0 28 chrY 2868131 2868307 -13034248 + A-rich Low_complexity Low_complexity 1 171 0 3 606 180 0 0 0 chrY 2868351 2868371 -13034184 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 3 606 220 120 60 0 chrY 2869040 2869090 -13033465 + A-rich Low_complexity Low_complexity 2 54 0 3 606 198 0 0 0 chrY 2869311 2869333 -13033222 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 606 1445 17 0 11 chrY 2869445 2869622 -13032933 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 3 606 225 0 0 0 chrY 2869654 2869679 -13032876 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 606 228 163 0 0 chrY 2869905 2869948 -13032607 + A-rich Low_complexity Low_complexity 1 43 0 3 606 242 347 81 10 chrY 2869948 2870047 -13032508 - B1_Mur3 SINE Alu -43 106 1 3 606 221 98 0 24 chrY 2870090 2870132 -13032423 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 606 674 252 0 0 chrY 2870138 2870269 -13032286 - B3 SINE B2 -84 132 2 3 606 4225 122 4 45 chrY 2870508 2871218 -13031337 - L1Md_F2 LINE L1 -11 6571 5891 3 606 714 238 86 14 chrY 2871454 2871663 -13030892 - URR1A DNA MER1_type -1 225 2 3 606 1082 237 88 18 chrY 2872516 2872800 -13029755 + RLTR20B3 LTR ERVK 1 304 -273 3 606 813 249 8 21 chrY 2872840 2873074 -13029481 + L1VL1 LINE L1 73 303 -6119 3 606 324 269 11 11 chrY 2873061 2873155 -13029400 + L1Md_T LINE L1 332 425 -6191 3 606 357 93 0 0 chrY 2873153 2873207 -13029348 + L1Md_T LINE L1 928 981 -5743 3 606 11946 55 4 11 chrY 2873192 2874760 -13027795 + L1Md_T LINE L1 4030 5586 -297 3 606 7859 59 2 0 chrY 2874761 2875754 -13026801 + L1Md_T LINE L1 5588 6582 0 3 606 261 302 196 10 chrY 2875934 2876031 -13026524 - ORR1E LTR MaLR -224 135 21 3 606 1135 242 32 44 chrY 2876763 2877120 -13025435 - ORR1B1 LTR MaLR -9 385 1 3 606 309 68 0 0 chrY 2877215 2877259 -13025296 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 606 638 177 5 9 chrY 2877287 2877423 -13025132 - L1Md_A LINE L1 -6141 583 481 3 606 11027 160 7 5 chrY 2877424 2879432 -13023123 - L1_Mm LINE L1 -1743 4140 2128 3 606 385 105 0 2 chrY 2879436 2879509 -13023046 + L1_Mur1 LINE L1 3663 3734 -2152 3 606 2010 117 17 31 chrY 2879512 2879885 -13022670 + RLTR22_Mus LTR ERVK 354 832 -1016 3 606 23 0 0 0 chrY 2879904 2879927 -13022628 + AT_rich Low_complexity Low_complexity 1 23 0 3 606 2958 160 76 16 chrY 2880330 2880369 -13022186 + L1_Mur1 LINE L1 4697 4734 -1152 3 606 248 0 0 30 chrY 2880369 2880402 -13022153 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 606 2958 160 76 16 chrY 2880402 2880521 -13022034 + L1_Mur1 LINE L1 4735 4848 -1038 3 606 585 42 0 0 chrY 2880521 2880593 -13021962 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 606 2958 160 76 16 chrY 2880593 2881062 -13021493 + L1_Mur1 LINE L1 4849 5362 -524 3 606 327 25 0 0 chrY 2881213 2881253 -13021302 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 606 300 53 0 0 chrY 2881289 2881327 -13021228 + (CTTA)n Simple_repeat Simple_repeat 2 39 0 3 606 417 199 16 87 chrY 2881464 2881592 -13020963 + IAPEY_LTR LTR ERVK 1 94 -291 3 606 12068 83 16 1 chrY 2881598 2883210 -13019345 + IAPEY3-int LTR ERVK 4929 6564 -1116 3 606 875 139 7 0 chrY 2883305 2883442 -13019113 + B1_Mus1 SINE Alu 5 142 -6 3 75 349 312 78 28 chrY 2883464 2883606 -13018949 + B3 SINE B2 27 175 -41 3 607 237 33 0 0 chrY 2884169 2884199 -13018356 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 607 321 274 163 12 chrY 2884210 2884376 -13018179 - L1MD LINE L1 -2873 3273 3083 3 607 269 26 26 0 chrY 2884376 2884414 -13018141 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 607 234 91 0 0 chrY 2885729 2885762 -13016793 + (T)n Simple_repeat Simple_repeat 1 33 0 3 607 998 163 17 30 chrY 2886215 2886449 -13016106 - L1_Mus3 LINE L1 -3 6635 6405 3 607 5979 82 65 6 chrY 2886550 2888090 -13014465 - IAPLTR3-int LTR ERVK -5798 1023 1 3 607 1957 132 3 66 chrY 2888090 2888438 -13014117 - IAPLTR3 LTR ERVK 0 326 1 3 607 5650 180 2 4 chrY 2888451 2889631 -13012924 - MusHAL1 LINE L1 -487 2225 1048 3 607 39 0 0 0 chrY 2889923 2889962 -13012593 + AT_rich Low_complexity Low_complexity 1 39 0 3 607 3738 100 0 8 chrY 2890002 2890525 -13012030 + MURVY-LTR LTR ERV1 1 519 0 3 607 185 243 14 0 chrY 2890593 2890663 -13011892 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 3 607 2653 314 45 23 chrY 2890981 2892266 -13010289 + MMERGLN-int LTR ERV1 373 1685 -3378 3 607 26894 144 13 11 chrY 2892269 2895514 -13007041 + L1Md_F2 LINE L1 273 3482 -2401 3 607 702 0 0 0 chrY 2895514 2895592 -13006963 + (TAAA)n Simple_repeat Simple_repeat 2 79 0 3 607 26894 111 8 2 chrY 2895592 2897679 -13004876 + L1Md_F2 LINE L1 3483 5585 -298 3 607 6783 98 7 16 chrY 2897680 2898681 -13003874 + L1Md_F2 LINE L1 5588 6579 -3 3 607 1501 330 64 64 chrY 2898687 2899120 -13003435 + MMERGLN-int LTR ERV1 1726 2168 -5284 3 607 188 34 0 33 chrY 2899120 2899150 -13003405 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 607 4057 316 28 43 chrY 2899150 2901267 -13001288 + MMERGLN-int LTR ERV1 2169 4365 -3191 3 607 525 53 58 44 chrY 2901291 2901428 -13001127 + A-rich Low_complexity Low_complexity 2 140 0 3 607 2413 318 28 21 chrY 2901429 2902553 -13000002 + MuRRS4-int LTR ERV1 3078 4208 -855 3