Index of /kundaje/marinovg/oak/genomes/mm9

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]z2012-06-24 05:14 8.8K 
[ ]ucsc_mm9.juncs2011-11-17 13:14 44M 
[ ]ucsc_mm9.gtf2010-12-09 01:04 134M 
[ ]ucsc_mm9.genes2010-12-23 11:18 3.8M 
[DIR]sequence/2013-11-21 09:48 -  
[TXT]refSeqSummary.txt2009-08-16 15:51 14M 
[TXT]refSeqStatus.txt2009-08-16 15:51 7.1M 
[TXT]refSeqAli.txt2009-08-16 15:51 6.2M 
[ ]refMrna.withNames.noPolyA.fa2012-06-24 10:29 82M 
[ ]refMrna.withNames.fa.fai2012-12-03 21:40 1.0M 
[ ]refMrna.withNames.fa2012-02-25 15:45 82M 
[ ]refMrna.fa2012-02-23 11:33 82M 
[TXT]refGene.txt2012-05-28 15:48 8.0M 
[TXT]refFlat.txt2011-02-21 23:00 6.5M 
[TXT]mouseGC.txt2009-12-03 10:46 1.1M 
[TXT]mouse-human-orthologues.txt2009-08-06 05:22 398K 
[DIR]mm9repeats/2019-07-09 23:46 -  
[TXT]mm9cpgIslandExt.txt2007-10-27 17:43 1.0M 
[ ]mm9cpgIslandExt.bed2009-02-17 06:05 479K 
[ ]mm9.refFlat-2012-10-22.juncs2012-10-23 22:29 11M 
[ ]mm9.refFlat-2012-10-22.gtf2012-10-23 22:22 56M 
[ ]mm9.chrom.sizes2013-06-22 08:04 584  
[ ]mm9.chrom.bed2011-05-18 22:35 653  
[ ]mm9.UCSC-2012-10-22.juncs2012-10-23 22:29 23M 
[ ]mm9.UCSC-2012-10-22.gtf2012-10-23 22:23 98M 
[TXT]mm9-sno_coordinates.txt2009-07-18 23:41 8.5K 
[ ]mm9-sno_coordinates.fa2009-07-19 00:43 47K 
[ ]mm9-snoRNA+RNA-repeats.fa2009-07-19 00:43 1.9M 
[ ]mm9-single-cell-spikes.chrom.sizes2012-02-07 07:19 694  
[ ]mm9-single-cell-spikes.bed2011-07-11 14:19 780  
[ ]mm9-single-cell-NIST-spikes.chrom.sizes2012-12-23 09:49 2.1K 
[ ]mm9-single-cell-NIST-fixed-spikes.chrom.sizes2013-04-17 10:05 2.1K 
[ ]mm9-refSeq.withNames.juncs2011-12-17 00:17 12M 
[ ]mm9-refSeq.withNames.gtf2011-12-17 00:12 81M 
[ ]mm9-refSeq.withNames.3p1000bp.gtf2013-06-23 00:59 10M 
[ ]mm9-refSeq.withNames.3p1000bp+spikes.gtf2013-06-24 19:14 10M 
[ ]mm9-refSeq.withNames.3p500bp.gtf2013-06-23 00:59 6.1M 
[ ]mm9-refSeq.withNames.3p500bp+spikes.gtf2013-06-24 19:14 6.1M 
[ ]mm9-refSeq.withNames+spikes.gtf2013-06-24 19:14 81M 
[ ]mm9-refSeq.juncs2011-11-17 13:14 15M 
[ ]mm9-refSeq.gtf2011-07-14 07:21 57M 
[ ]mm9-refSeq.genes2010-12-23 11:20 768K 
[ ]mm9-refFlat.gtf2012-12-12 17:13 56M 
[ ]mm9-male.chrom.bed2011-05-11 14:39 375  
[ ]mm9-E-boxes-conserved-30way-vertebrate-strict-all+repeats.bed2009-08-15 14:01 8.5M 
[ ]mm9-E-boxes-conserved-30way-vertebrate-CAGSTG-all+repeats.bed2009-08-15 14:01 8.5M 
[ ]mm9-E-boxes-all.bed2009-08-15 11:24 80M 
[ ]mm9-E-boxes-all+repeats.bed2009-08-15 11:25 144M 
[ ]mm9+mm9sp36spike.warnings2009-08-07 23:34 68  
[DIR]mappability/2015-07-30 07:00 -  
[ ]male.mm9.chrom.sizes2010-03-10 19:46 331  
[DIR]liftOver-chain-files/2020-09-17 10:56 -  
[TXT]knownToLocusLink.txt2007-10-12 18:47 666K 
[TXT]knownGene.txt2009-01-21 05:55 11M 
[DIR]gencode/2014-06-17 21:43 -  
[ ]female.mm9.chrom.sizes2010-03-10 19:46 317  
[DIR]conserved_elements/2011-05-23 20:06 -  
[DIR]bwa-indexes/2013-10-26 20:36 -  
[DIR]bowtie2-indexes/2013-03-23 04:58 -  
[DIR]bowtie-indexes/2015-07-30 07:01 -  
[ ]Mus_musculus.NCBIM37.67.gtf.bz22012-05-10 14:09 10M 
[ ]Mus_musculus.NCBIM37.67.filtered.pseudogene.gtf2013-10-17 07:04 2.3M 
[ ]Mus_musculus.NCBIM37.67.filtered.pseudogene.genes2013-10-17 07:04 284K 
[ ]Mus_musculus.NCBIM37.67.filtered.protein_coding.gtf2013-10-17 07:03 270M 
[ ]Mus_musculus.NCBIM37.67.filtered.protein_coding.genes2013-10-17 07:05 1.1M 
[ ]Mus_musculus.NCBIM37.67.filtered.lincRNA.gtf2013-10-17 07:03 2.1M 
[ ]Mus_musculus.NCBIM37.67.filtered.lincRNA.genes2013-10-17 07:04 112K 
[ ]Mus_musculus.NCBIM37.67.filtered.juncs2013-11-16 16:25 29M 
[ ]Mus_musculus.NCBIM37.67.filtered.gtf-hist2013-11-14 14:24 1.9K 
[ ]Mus_musculus.NCBIM37.67.filtered.gtf2013-04-17 09:48 278M 
[ ]Mus_musculus.NCBIM37.67.filtered.chr.gtf-hist2013-11-14 14:26 249  
[ ]Mus_musculus.NCBIM37.67.filtered.chr.gtf2013-11-14 14:26 277M 
[ ]Mus_musculus.NCBIM37.67.filtered.3p1000bp.gtf2013-06-23 01:03 48M 
[ ]Mus_musculus.NCBIM37.67.filtered.3p1000bp.fa2013-10-13 12:22 83M 
[ ]Mus_musculus.NCBIM37.67.filtered.3p1000bp+spikes.gtf2013-06-24 19:14 48M 
[ ]Mus_musculus.NCBIM37.67.filtered.3p500bp.gtf2013-06-23 01:02 33M 
[ ]Mus_musculus.NCBIM37.67.filtered.3p500bp+spikes.gtf2013-06-24 19:14 33M 
[ ]Mus_musculus.NCBIM37.67.filtered+spikes.gtf2013-06-24 19:15 278M 
[ ]Mus_musculus.NCBIM37.66.gtf.bz22012-04-01 16:49 10M 
[ ]Mus_musculus.NCBIM37.66.filtered.stats2012-05-01 23:15 1.5K 
[ ]Mus_musculus.NCBIM37.66.filtered.snoRNA.gtf2012-05-01 23:16 310K 
[ ]Mus_musculus.NCBIM37.66.filtered.snRNA.gtf2012-05-01 23:16 269K 
[ ]Mus_musculus.NCBIM37.66.filtered.rRNA.gtf2012-05-01 23:16 66K 
[ ]Mus_musculus.NCBIM37.66.filtered.pseudogene.gtf2012-05-01 23:17 2.3M 
[ ]Mus_musculus.NCBIM37.66.filtered.pseudogene.geneIDs2012-09-22 23:35 284K 
[ ]Mus_musculus.NCBIM37.66.filtered.pseudogene.fasta2012-10-15 13:34 4.8M 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta.psq2012-10-15 13:18 26M 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta.psi2012-10-15 13:18 165K 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta.psd2012-10-15 13:18 9.1M 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta.pin2012-10-15 13:18 615K 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta.phr2012-10-15 13:18 6.4M 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta.formatdb.log2012-10-15 13:18 635  
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF.fasta2012-10-15 13:18 30M 
[IMG]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf.ORF2012-10-15 13:18 34M 
[ ]Mus_musculus.NCBIM37.66.filtered.protein_coding.gtf2012-05-01 23:13 270M 
[ ]Mus_musculus.NCBIM37.66.filtered.protein_coding.geneIDs2012-09-22 23:36 1.1M 
[ ]Mus_musculus.NCBIM37.66.filtered.miRNA.gtf2012-05-01 23:16 324K 
[ ]Mus_musculus.NCBIM37.66.filtered.miRNA.geneIDs2012-09-22 23:36 88K 
[ ]Mus_musculus.NCBIM37.66.filtered.lincRNA.gtf2012-10-10 23:38 2.1M 
[ ]Mus_musculus.NCBIM37.66.filtered.lincRNA.geneIDs2012-10-20 23:23 112K 
[ ]Mus_musculus.NCBIM37.66.filtered.gtf2012-04-01 16:52 278M 
[ ]Mus_musculus.NCBIM37.66.filtered.chr.juncs2012-05-07 00:56 29M 
[ ]Mus_musculus.NCBIM37.66.filtered.chr.gtf2012-05-06 22:14 277M 
[IMG]Mus_musculus.NCBIM37.66.filtered.ORF.gtf2012-09-28 20:31 115M 
[ ]Mus_musculus.NCBIM37.65.gtf.bz22012-04-01 16:49 9.9M 
[ ]Mus_musculus.NCBIM37.65.filtered.gtf2012-04-01 16:52 274M 
[ ]Mus_musculus.NCBIM37.64.old_to_new_names2011-09-16 12:57 2.8K 
[ ]Mus_musculus.NCBIM37.64.gtf.bz22011-09-16 12:47 9.9M 
[ ]Mus_musculus.NCBIM37.64.filtered.juncs2011-11-17 13:14 29M 
[ ]Mus_musculus.NCBIM37.64.filtered.gtf2011-09-16 13:05 274M 
[ ]Mus_musculus.NCBIM37.63.gtf.bz22011-07-05 21:17 9.6M 
[ ]Mus_musculus.NCBIM37.63.filtered.stats2011-07-21 22:15 670  
[ ]Mus_musculus.NCBIM37.63.filtered.pseudogene.geneIDs2013-03-02 09:15 311K 
[ ]Mus_musculus.NCBIM37.63.filtered.protein_coding.geneIDs2011-11-05 00:23 3.3M 
[ ]Mus_musculus.NCBIM37.63.filtered.lincRNA.gtf2013-07-14 04:16 1.3M 
[ ]Mus_musculus.NCBIM37.63.filtered.lincRNA.genes2013-11-22 18:44 69K 
[ ]Mus_musculus.NCBIM37.63.filtered.lincRNA.geneIDs2011-11-05 00:25 102K 
[ ]Mus_musculus.NCBIM37.63.filtered.juncs2011-11-17 13:14 28M 
[ ]Mus_musculus.NCBIM37.63.filtered.gtf2011-07-05 21:34 233M 
[ ]Mus_musculus.NCBIM37.63.filtered.BTs.genes2014-09-17 08:28 1.4M 
[ ]Mus_musculus.NCBIM37.63.filtered.BTs2014-09-07 21:04 6.6M 
[ ]Mus_musculus.NCBIM37.63.filtered.3p1000bp.gtf2011-11-07 13:30 45M 
[ ]Mus_musculus.NCBIM37.63.filtered.3p500bp.gtf2011-11-07 12:21 31M 
[ ]Mus_musculus.NCBIM37.62.gtf.bz22011-06-02 14:48 9.6M 
[ ]MGC.juncs2011-11-17 13:14 11M 
[ ]MGC.gtf2011-07-14 07:22 24M 
[ ]BAM-header-mm9.1.SAM2012-06-26 17:09 572  
[ ]BAM-header-mm9-single-cell-spikes.SAM2013-02-03 17:01 1.7K 
[ ]BAM-header-mm9-randoms-spikes2011-04-20 07:31 1.2K 
[ ]BAM-header-mm9-randoms-single-cell-spikes22011-07-14 15:45 1.1K 
[ ]BAM-header-mm9-randoms-single-cell-spikes2011-07-14 14:00 1.1K 
[ ]BAM-header-mm9-NIST-spikes.SAM2013-02-03 17:01 4.2K 
[ ]AceView.juncs2011-11-17 13:14 43M 
[ ]AceView.gtf2011-07-14 07:22 199M 
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443