#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|11466255|ref|NP_049570.1|	421	DUF1081	Domain	10.5	2.7	3.5e-05	0.62	42	97	81	138	69	198	0.87
gi|11466256|ref|NP_049571.1|	276	Ribosomal_S13	Ribosomal	34.9	0.0	2e-12	1.8e-08	86	126	70	110	22	112	0.87
gi|11466256|ref|NP_049571.1|	276	Ribosomal_S13	Ribosomal	-3.2	0.2	1.2	1.1e+04	60	60	251	251	232	270	0.49
gi|11466256|ref|NP_049571.1|	276	ApbE	ApbE	11.5	0.0	1.8e-05	0.16	103	130	164	191	109	208	0.79
gi|11466258|ref|NP_049573.1|	98	Ribosomal_S19	Ribosomal	39.0	1.9	3.1e-14	5.6e-10	2	81	4	85	3	85	0.91
gi|11466259|ref|NP_049574.1|	262	Ribosomal_L2_C	Ribosomal	94.5	0.0	6e-31	5.4e-27	3	126	133	255	132	255	0.94
gi|11466259|ref|NP_049574.1|	262	Ribosomal_L2	Ribosomal	27.2	0.9	3e-10	2.7e-06	1	73	41	113	41	117	0.97
gi|11466259|ref|NP_049574.1|	262	Ribosomal_L2	Ribosomal	-2.8	0.0	0.72	6.4e+03	53	72	182	201	178	206	0.69
gi|11466259|ref|NP_049574.1|	262	Ribosomal_L2	Ribosomal	-4.1	0.0	1.8	1.6e+04	1	9	201	209	201	220	0.65
gi|11466261|ref|NP_049576.1|	162	Oxidored_q6	NADH	68.9	0.0	1.9e-23	3.5e-19	4	130	32	139	30	140	0.86
gi|11466262|ref|NP_049577.1|	133	Ribosom_S12_S23	Ribosomal	87.9	0.6	3.6e-29	3.2e-25	4	110	13	117	10	121	0.87
gi|11466262|ref|NP_049577.1|	133	Ribosomal_S12	Ribosomal	13.7	0.0	9.1e-06	0.081	22	83	35	94	29	97	0.71
gi|11466263|ref|NP_049578.1|	178	Proton_antipo_M	Proton-conducting	23.7	7.7	1.3e-09	2.4e-05	198	290	18	108	7	111	0.70
gi|11466263|ref|NP_049578.1|	178	Proton_antipo_M	Proton-conducting	-2.1	0.2	0.097	1.7e+03	138	150	153	166	116	176	0.52
gi|11466264|ref|NP_049579.1|	442	Complex1_49kDa	Respiratory-chain	286.9	0.0	1.4e-89	1.2e-85	1	271	140	442	140	442	0.94
gi|11466264|ref|NP_049579.1|	442	RIIa	Regulatory	11.1	0.1	2.7e-05	0.24	20	35	190	205	190	207	0.93
gi|11466265|ref|NP_049580.1|	101	Cas9_C	Cas9	-1.0	0.0	0.11	2e+03	62	83	24	46	10	59	0.56
gi|11466265|ref|NP_049580.1|	101	Cas9_C	Cas9	11.4	0.0	1.5e-05	0.28	59	96	57	94	44	100	0.86
gi|11466269|ref|NP_049584.1|	59	NADHdh	NADH	33.1	4.2	2e-12	3.6e-08	250	297	3	50	1	53	0.94
gi|11466270|ref|NP_049585.1|	75	ATP-synt_C	ATP	25.2	1.2	8.7e-10	1.6e-05	7	52	15	64	10	69	0.89
gi|11466271|ref|NP_049586.1|	276	Phage_int_SAM_4	Phage	13.2	2.8	5.1e-06	0.092	1	54	4	58	4	64	0.93
gi|11466271|ref|NP_049586.1|	276	Phage_int_SAM_4	Phage	6.8	2.0	0.00051	9.2	12	79	80	147	68	153	0.80
gi|11466271|ref|NP_049586.1|	276	Phage_int_SAM_4	Phage	-1.8	0.1	0.26	4.6e+03	24	34	158	168	155	182	0.68
gi|11466272|ref|NP_049587.1|	365	Proton_antipo_M	Proton-conducting	25.7	31.3	3.3e-10	5.9e-06	37	191	200	362	149	364	0.81
gi|11466275|ref|NP_049590.1|	143	Ribosomal_L16	Ribosomal	42.3	0.2	3.9e-15	7e-11	8	127	10	133	3	138	0.78
gi|11466276|ref|NP_049591.1|	512	Cytochrom_C_asm	Cytochrome	24.1	25.2	1.4e-09	2.6e-05	35	201	79	242	4	253	0.65
gi|11466276|ref|NP_049591.1|	512	Cytochrom_C_asm	Cytochrome	0.3	3.0	0.027	4.8e+02	3	54	260	309	258	334	0.80
gi|11466276|ref|NP_049591.1|	512	Cytochrom_C_asm	Cytochrome	-3.1	3.3	0.31	5.5e+03	43	47	371	384	323	427	0.50
gi|11466278|ref|NP_049593.1|	121	Oxidored_q4	NADH-ubiquinone/plastoquinone	59.2	11.6	3.9e-20	3.5e-16	12	99	31	118	17	118	0.90
gi|11466278|ref|NP_049593.1|	121	Phage_holin_2_3	Bacteriophage	14.8	0.6	1.9e-06	0.017	16	53	5	39	2	41	0.83
gi|11466281|ref|NP_049596.1|	198	Complex1_30kDa	Respiratory-chain	54.5	0.0	9.5e-19	1.7e-14	24	121	58	176	34	177	0.75
gi|11466283|ref|NP_049598.1|	430	Cytochrome_B	Cytochrome	60.6	11.0	2.9e-20	1.7e-16	15	186	33	204	20	206	0.87
gi|11466283|ref|NP_049598.1|	430	Cytochrome_B	Cytochrome	-2.6	0.0	0.66	4e+03	17	31	232	246	228	264	0.65
gi|11466283|ref|NP_049598.1|	430	Cytochrom_B_N_2	Cytochrome	49.0	5.8	1.1e-16	6.5e-13	2	165	90	252	89	255	0.85
gi|11466283|ref|NP_049598.1|	430	Cytochrom_B_C	Cytochrome	-1.1	0.2	0.38	2.3e+03	67	84	122	139	89	157	0.52
gi|11466283|ref|NP_049598.1|	430	Cytochrom_B_C	Cytochrome	-3.2	0.2	1.8	1.1e+04	65	77	235	247	227	250	0.59
gi|11466283|ref|NP_049598.1|	430	Cytochrom_B_C	Cytochrome	18.8	2.9	2.4e-07	0.0014	10	74	275	336	272	368	0.81
gi|11466283|ref|NP_049598.1|	430	Cytochrom_B_C	Cytochrome	0.6	0.1	0.12	7.1e+02	60	80	351	370	330	398	0.75
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_M	Proton-conducting	0.4	1.0	0.034	3e+02	46	95	44	104	23	109	0.73
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_M	Proton-conducting	-1.7	0.1	0.15	1.3e+03	56	92	155	188	149	198	0.75
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_M	Proton-conducting	-3.5	2.6	0.51	4.6e+03	55	68	240	254	191	280	0.45
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_M	Proton-conducting	219.0	26.6	8.8e-69	7.9e-65	1	286	307	597	307	605	0.94
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_M	Proton-conducting	-2.7	0.5	0.3	2.7e+03	143	160	704	721	648	724	0.62
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_N	NADH-Ubiquinone	0.1	0.0	0.094	8.4e+02	14	34	36	56	28	58	0.82
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_N	NADH-Ubiquinone	24.0	4.6	3.4e-09	3.1e-05	3	57	239	294	237	295	0.89
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_N	NADH-Ubiquinone	-3.4	0.1	1.2	1.1e+04	15	28	344	357	331	362	0.64
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_N	NADH-Ubiquinone	-1.6	0.4	0.32	2.9e+03	18	42	483	507	479	515	0.75
gi|11466284|ref|NP_049599.1|	755	Proton_antipo_N	NADH-Ubiquinone	-4.9	1.6	2	1.8e+04	19	37	703	721	701	722	0.63
gi|11466285|ref|NP_049600.1|	604	COX2	Cytochrome	7.2	0.4	0.0005	4.4	2	22	114	136	113	165	0.77
gi|11466285|ref|NP_049600.1|	604	COX2	Cytochrome	4.8	0.0	0.0027	24	10	79	177	249	165	265	0.82
gi|11466285|ref|NP_049600.1|	604	COX2	Cytochrome	83.6	0.0	1.1e-27	9.7e-24	39	118	486	565	471	567	0.95
gi|11466285|ref|NP_049600.1|	604	Bromodomain	Bromodomain	13.4	0.3	6.9e-06	0.062	3	57	321	389	316	420	0.85
gi|11466287|ref|NP_049602.1|	443	FA_desaturase	Fatty	-2.4	0.1	0.19	3.5e+03	163	183	7	28	2	54	0.55
gi|11466287|ref|NP_049602.1|	443	FA_desaturase	Fatty	11.8	6.4	8.7e-06	0.16	122	216	302	407	250	414	0.64
gi|11466290|ref|NP_049605.1|	688	COX1	Cytochrome	77.5	1.4	5.1e-26	9.2e-22	1	105	52	163	52	201	0.84
gi|11466290|ref|NP_049605.1|	688	COX1	Cytochrome	237.1	54.4	1.8e-74	3.3e-70	100	432	266	610	211	616	0.91
gi|11466291|ref|NP_049606.1|	284	NADHdh	NADH	215.5	23.4	5.4e-68	9.6e-64	4	250	26	272	23	283	0.94
gi|11466292|ref|NP_049607.1|	256	DUF2070	Predicted	4.6	23.5	0.00046	8.2	20	205	3	238	1	243	0.64
gi|11466293|ref|NP_049608.1|	119	Ribosomal_L14	Ribosomal	78.2	0.0	5.7e-26	5.1e-22	1	112	1	112	1	115	0.99
gi|11466293|ref|NP_049608.1|	119	Transposon_TraM	Conjugative	18.1	0.0	1.8e-07	0.0016	42	94	53	107	24	114	0.81
gi|11466295|ref|NP_049610.1|	509	Proton_antipo_M	Proton-conducting	-4.3	5.0	0.45	8.2e+03	38	87	21	66	10	77	0.61
gi|11466295|ref|NP_049610.1|	509	Proton_antipo_M	Proton-conducting	165.8	26.7	6.8e-53	1.2e-48	3	292	171	455	169	456	0.95