# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NADHdh PF00146.21 lcl|GU057832.1_prot_ADN85864.1_2 - 2.3e-42 145.3 20.3 3e-42 145.0 20.3 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Spore_YhaL PF14147.6 lcl|GU057832.1_prot_ADN85864.1_2 - 0.74 9.6 0.0 0.74 9.6 0.0 2.3 4 0 0 4 4 4 0 Sporulation protein YhaL Prp19 PF08606.11 lcl|GU057832.1_prot_ADN85865.1_3 - 0.0058 16.6 0.4 0.017 15.1 0.4 1.8 1 0 0 1 1 1 1 Prp19/Pso4-like ASFV_L11L PF05293.11 lcl|GU057832.1_prot_ADN85865.1_3 - 0.054 13.8 0.8 0.22 11.9 0.1 2.4 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein Oxidored_q4 PF00507.19 lcl|GU057832.1_prot_ADN85868.1_6 - 2.8e-10 40.2 3.9 2.8e-10 40.2 3.9 1.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 UCH PF00443.29 lcl|GU057832.1_prot_ADN85868.1_6 - 0.1 12.1 0.3 0.1 12.1 0.3 1.1 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase Claudin_2 PF13903.6 lcl|GU057832.1_prot_ADN85868.1_6 - 1.6 8.5 9.6 2.4 7.9 0.1 2.1 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Complex1_30kDa PF00329.19 lcl|GU057832.1_prot_ADN85869.1_7 - 1.7e-16 61.0 0.0 2e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Octopine_DH PF02317.17 lcl|GU057832.1_prot_ADN85870.1_8 - 0.074 13.1 0.8 0.17 11.9 0.2 1.9 2 0 0 2 2 2 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain DUF3272 PF11676.8 lcl|GU057832.1_prot_ADN85870.1_8 - 0.68 10.2 3.7 28 5.0 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3272) Pneumovirus_M2 PF06436.11 lcl|GU057832.1_prot_ADN85871.1_9 - 0.033 13.7 0.6 5.5 6.4 0.0 2.3 2 0 0 2 2 2 0 Pneumovirus matrix protein 2 (M2) FlgD_ig PF13860.6 lcl|GU057832.1_prot_ADN85874.1_12 - 0.045 13.6 0.1 0.089 12.7 0.1 1.4 1 0 0 1 1 1 0 FlgD Ig-like domain HrpB1_HrpK PF09613.10 lcl|GU057832.1_prot_ADN85874.1_12 - 0.092 12.4 0.0 6.8 6.4 0.0 2.6 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) Proton_antipo_M PF00361.20 lcl|GU057832.1_prot_ADN85877.1_15 - 6.3e-24 84.7 15.4 8.5e-24 84.3 15.4 1.1 1 0 0 1 1 1 1 Proton-conducting membrane transporter Oxidored_q6 PF01058.22 lcl|GU057832.1_prot_ADN85879.1_17 - 7.2e-22 77.6 0.0 8.7e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RNaseH_C PF09293.10 lcl|GU057832.1_prot_ADN85880.1_18 - 0.13 12.6 0.1 0.3 11.4 0.1 1.5 1 0 0 1 1 1 0 T4 RNase H, C terminal Ribosomal_L14 PF00238.19 lcl|GU057832.1_prot_ADN85884.1_22 - 9.7e-17 61.2 0.1 1.2e-16 60.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e DUF2838 PF10998.8 lcl|GU057832.1_prot_ADN85885.1_23 - 0.026 14.8 12.8 0.027 14.7 11.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2838) Proton_antipo_M PF00361.20 lcl|GU057832.1_prot_ADN85887.1_25 - 2.8e-50 171.2 29.1 2.8e-50 171.2 29.1 2.3 2 1 0 2 2 2 1 Proton-conducting membrane transporter Ribosomal_L2_C PF03947.18 lcl|GU057832.1_prot_ADN85890.1_28 - 1.7e-24 86.4 0.1 1.9e-24 86.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Complex1_49kDa PF00346.19 lcl|GU057832.1_prot_ADN85892.1_30 - 2.3e-56 190.9 0.0 4.3e-56 190.0 0.0 1.4 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Ribosomal_S14 PF00253.21 lcl|GU057832.1_prot_ADN85893.1_31 - 5e-10 39.0 1.0 5.3e-10 38.9 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_S8 PF00410.19 lcl|GU057832.1_prot_ADN85894.1_32 - 4.4e-15 55.8 0.0 4.9e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosom_S12_S23 PF00164.25 lcl|GU057832.1_prot_ADN85897.1_35 - 4.7e-09 35.9 0.2 5.5e-09 35.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S12 PF17487.2 lcl|GU057832.1_prot_ADN85897.1_35 - 0.066 14.0 0.0 0.13 13.0 0.0 1.5 1 1 0 1 1 1 0 Ribosomal protein S12 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Nyctotherus_ovalis.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Nyctotherus_ovalis.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Nyctotherus_ovalis.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Nyctotherus_ovalis.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 19:56:53 2019 # [ok]