# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Proton_antipo_M PF00361.20 lcl|GQ903131.1_prot_ACX30976.1_1 - 2.7e-45 154.8 24.7 2.7e-45 154.8 24.7 2.0 2 1 0 2 2 2 1 Proton-conducting membrane transporter DUF5480 PF17576.2 lcl|GQ903131.1_prot_ACX30976.1_1 - 4.2 7.4 7.3 1.9 8.5 0.6 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5480) Prion_bPrPp PF11587.8 lcl|GQ903131.1_prot_ACX30978.1_3 - 0.25 11.2 0.9 0.74 9.7 0.9 1.8 1 0 0 1 1 1 0 Major prion protein bPrPp - N terminal Cytochrome_B PF00033.19 lcl|GQ903131.1_prot_ACX30980.1_5 - 8.7e-07 28.9 17.1 2.5e-06 27.5 17.1 1.7 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 lcl|GQ903131.1_prot_ACX30980.1_5 - 8.1e-06 25.9 5.9 8.1e-06 25.9 5.9 2.2 3 1 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.17 lcl|GQ903131.1_prot_ACX30980.1_5 - 0.0021 18.3 2.9 0.0021 18.3 2.9 2.5 3 1 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD COX2 PF00116.20 lcl|GQ903131.1_prot_ACX30982.1_7 - 5.8e-24 84.3 1.1 8.2e-23 80.6 0.2 2.7 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Ribosomal_L14 PF00238.19 lcl|GQ903131.1_prot_ACX30983.1_8 - 2.1e-14 53.6 0.0 2.7e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e COX1 PF00115.20 lcl|GQ903131.1_prot_ACX30984.1_9 - 1.6e-87 294.2 66.2 2.1e-67 227.9 49.8 2.4 2 0 0 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I Oxidored_q2 PF00420.24 lcl|GQ903131.1_prot_ACX30985.1_10 - 1.8 8.2 12.9 3.3 7.4 12.9 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Ribosomal_S3_C PF00189.20 lcl|GQ903131.1_prot_ACX30988.1_13 - 0.019 15.4 0.0 0.13 12.8 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S3, C-terminal domain Complex1_30kDa PF00329.19 lcl|GQ903131.1_prot_ACX30990.1_15 - 2.5e-06 28.1 0.0 4.2e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ESSS PF10183.9 lcl|GQ903131.1_prot_ACX30991.1_16 - 0.34 11.1 4.2 0.21 11.8 1.6 1.8 1 1 1 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) TMEM52 PF14979.6 lcl|GQ903131.1_prot_ACX30992.1_17 - 0.023 14.6 1.3 0.034 14.1 1.3 1.3 1 0 0 1 1 1 0 Transmembrane 52 UPF0182 PF03699.13 lcl|GQ903131.1_prot_ACX30992.1_17 - 0.088 10.9 3.5 0.086 11.0 3.5 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Ribosomal_L16 PF00252.18 lcl|GQ903131.1_prot_ACX30995.1_20 - 0.0045 17.0 0.0 0.0059 16.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e CBP_BcsF PF11120.8 lcl|GQ903131.1_prot_ACX30995.1_20 - 0.72 10.0 6.0 0.52 10.5 3.6 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Proton_antipo_M PF00361.20 lcl|GQ903131.1_prot_ACX30996.1_21 - 2e-43 148.7 37.4 2e-43 148.7 37.4 2.6 3 1 0 3 3 3 1 Proton-conducting membrane transporter Ribosom_S12_S23 PF00164.25 lcl|GQ903131.1_prot_ACX30997.1_22 - 1.2e-16 60.3 0.1 1.6e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Oxidored_q6 PF01058.22 lcl|GQ903131.1_prot_ACX30998.1_23 - 5.9e-20 71.4 0.0 7.2e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Ribosomal_L2_C PF03947.18 lcl|GQ903131.1_prot_ACX31000.1_25 - 1.2e-13 51.4 0.0 2.3e-13 50.4 0.0 1.4 1 1 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Endonuclease_7 PF02945.15 lcl|GQ903131.1_prot_ACX31000.1_25 - 0.046 13.6 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Recombination endonuclease VII S4 PF01479.25 lcl|GQ903131.1_prot_ACX31003.1_28 - 0.15 11.8 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 S4 domain Complex1_49kDa PF00346.19 lcl|GQ903131.1_prot_ACX31004.1_29 - 6.3e-73 245.2 0.0 8.4e-73 244.8 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Moneuplotes_crassus.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Moneuplotes_crassus.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Moneuplotes_crassus.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/mitochondrial_genomes/Alveolata/Ciliates/Moneuplotes_crassus.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 19:52:05 2019 # [ok]