#regionID	chrom	start	stop	RPM	fold	multi%	plus%	leftPlus%	peakPos	peakHeight	pValue
LINE-L1__HAL1-2a_MD	chr1	2086564	2086744	5	5	1	1	1	1	2086654	5	0
LINE-L1__HAL1-2a_MD	chr1	2087122	2087313	5	5	1	1	1	1	2087217	5	0
LINE-L1__HAL1-2a_MD	chr1	2893721	2893890	5	5	1	1	1	1	2893805	5	0
LINE-L1__HAL1-2a_MD	chr1	2893901	2894167	5	5	1	1	1	1	2894034	5	0
LINE-L1__HAL1-2a_MD	chr1	2894281	2894462	5	5	1	1	1	1	2894371	5	0
LINE-L1__HAL1-2a_MD	chr1	2942840	2943015	5	5	1	1	1	1	2942927	5	0
LINE-L1__HAL1-2a_MD	chr1	3177124	3177219	5	5	1	1	1	1	3177171	5	0
LINE-L1__HAL1-2a_MD	chr1	3177221	3177402	5	5	1	1	1	1	3177311	5	0
LINE-L1__HAL1-2a_MD	chr1	4204770	4204976	5	5	1	1	1	1	4204873	5	0
LINE-L1__HAL1-2a_MD	chr1	4396506	4396654	5	5	1	1	1	1	4396580	5	0
LINE-L1__HAL1-2a_MD	chr1	4396838	4396851	5	5	1	1	1	1	4396844	5	0
LINE-L1__HAL1-2a_MD	chr1	4428951	4429105	5	5	1	1	1	1	4429028	5	0
LINE-L1__HAL1-2a_MD	chr1	4429133	4429318	5	5	1	1	1	1	4429225	5	0
LINE-L1__HAL1-2a_MD	chr1	4429554	4429757	5	5	1	1	1	1	4429655	5	0
LINE-L1__HAL1-2a_MD	chr1	4707178	4707354	5	5	1	1	1	1	4707266	5	0
LINE-L1__HAL1-2a_MD	chr1	4707355	4707540	5	5	1	1	1	1	4707447	5	0
LINE-L1__HAL1-2a_MD	chr1	4707564	4707729	5	5	1	1	1	1	4707646	5	0
LINE-L1__HAL1-2a_MD	chr1	4707740	4707850	5	5	1	1	1	1	4707795	5	0
LINE-L1__HAL1-2a_MD	chr1	4742819	4742989	5	5	1	1	1	1	4742904	5	0
LINE-L1__HAL1-2a_MD	chr1	4776565	4776750	5	5	1	1	1	1	4776657	5	0
LINE-L1__HAL1-2a_MD	chr1	4776751	4776881	5	5	1	1	1	1	4776816	5	0
LINE-L1__HAL1-2a_MD	chr1	4827224	4827333	5	5	1	1	1	1	4827278	5	0
LINE-L1__HAL1-2a_MD	chr1	4827514	4827626	5	5	1	1	1	1	4827570	5	0
LINE-L1__HAL1-2a_MD	chr1	5889588	5889707	5	5	1	1	1	1	5889647	5	0
LINE-L1__HAL1-2a_MD	chr1	5889887	5889941	5	5	1	1	1	1	5889914	5	0
LINE-L1__HAL1-2a_MD	chr1	7443692	7443856	5	5	1	1	1	1	7443774	5	0
LINE-L1__HAL1-2a_MD	chr1	7490475	7490648	5	5	1	1	1	1	7490561	5	0
LINE-L1__HAL1-2a_MD	chr1	7628203	7628379	5	5	1	1	1	1	7628291	5	0
LINE-L1__HAL1-2a_MD	chr1	7628380	7628508	5	5	1	1	1	1	7628444	5	0
LINE-L1__HAL1-2a_MD	chr1	7628515	7628712	5	5	1	1	1	1	7628613	5	0
LINE-L1__HAL1-2a_MD	chr1	7628771	7628969	5	5	1	1	1	1	7628870	5	0
LINE-L1__HAL1-2a_MD	chr1	7629049	7629232	5	5	1	1	1	1	7629140	5	0
LINE-L1__HAL1-2a_MD	chr1	7629282	7629468	5	5	1	1	1	1	7629375	5	0
LINE-L1__HAL1-2a_MD	chr1	7629665	7629856	5	5	1	1	1	1	7629760	5	0
LINE-L1__HAL1-2a_MD	chr1	9318199	9318341	5	5	1	1	1	1	9318270	5	0
LINE-L1__HAL1-2a_MD	chr1	9318812	9318962	5	5	1	1	1	1	9318887	5	0
LINE-L1__HAL1-2a_MD	chr1	9318970	9319042	5	5	1	1	1	1	9319006	5	0
LINE-L1__HAL1-2a_MD	chr1	9319347	9319412	5	5	1	1	1	1	9319379	5	0
LINE-L1__HAL1-2a_MD	chr1	9319804	9319942	5	5	1	1	1	1	9319873	5	0
LINE-L1__HAL1-2a_MD	chr1	9319952	9320149	5	5	1	1	1	1	9320050	5	0
LINE-L1__HAL1-2a_MD	chr1	9320127	9320280	5	5	1	1	1	1	9320203	5	0
LINE-L1__HAL1-2a_MD	chr1	9320397	9320545	5	5	1	1	1	1	9320471	5	0
LINE-L1__HAL1-2a_MD	chr1	9320663	9320814	5	5	1	1	1	1	9320738	5	0
LINE-L1__HAL1-2a_MD	chr1	10913133	10913293	5	5	1	1	1	1	10913213	5	0
LINE-L1__HAL1-2a_MD	chr1	10913306	10913493	5	5	1	1	1	1	10913399	5	0
LINE-L1__HAL1-2a_MD	chr1	10913821	10913994	5	5	1	1	1	1	10913907	5	0
LINE-L1__HAL1-2a_MD	chr1	10913997	10914138	5	5	1	1	1	1	10914067	5	0
LINE-L1__HAL1-2a_MD	chr1	18075356	18075535	5	5	1	1	1	1	18075445	5	0
LINE-L1__HAL1-2a_MD	chr1	18210271	18210422	5	5	1	1	1	1	18210346	5	0
LINE-L1__HAL1-2a_MD	chr1	18375672	18375861	5	5	1	1	1	1	18375766	5	0
LINE-L1__HAL1-2a_MD	chr1	18376101	18376164	5	5	1	1	1	1	18376132	5	0
LINE-L1__HAL1-2a_MD	chr1	18376341	18376454	5	5	1	1	1	1	18376397	5	0
LINE-L1__HAL1-2a_MD	chr1	19127675	19127839	5	5	1	1	1	1	19127757	5	0
LINE-L1__HAL1-2a_MD	chr1	19127813	19127978	5	5	1	1	1	1	19127895	5	0
LINE-L1__HAL1-2a_MD	chr1	19127957	19128189	5	5	1	1	1	1	19128073	5	0
LINE-L1__HAL1-2a_MD	chr1	19128192	19128599	5	5	1	1	1	1	19128395	5	0
LINE-L1__HAL1-2a_MD	chr1	19128604	19128770	5	5	1	1	1	1	19128687	5	0
LINE-L1__HAL1-2a_MD	chr1	19128773	19128965	5	5	1	1	1	1	19128869	5	0
LINE-L1__HAL1-2a_MD	chr1	19128941	19129211	5	5	1	1	1	1	19129076	5	0
LINE-L1__HAL1-2a_MD	chr1	19151730	19151900	5	5	1	1	1	1	19151815	5	0
LINE-L1__HAL1-2a_MD	chr1	19152251	19152432	5	5	1	1	1	1	19152341	5	0
LINE-L1__HAL1-2a_MD	chr1	19152437	19152602	5	5	1	1	1	1	19152519	5	0
LINE-L1__HAL1-2a_MD	chr1	19184433	19184616	5	5	1	1	1	1	19184524	5	0
LINE-L1__HAL1-2a_MD	chr1	19184650	19184832	5	5	1	1	1	1	19184741	5	0
LINE-L1__HAL1-2a_MD	chr1	19184859	19185019	5	5	1	1	1	1	19184939	5	0
LINE-L1__HAL1-2a_MD	chr1	19185045	19185208	5	5	1	1	1	1	19185126	5	0
LINE-L1__HAL1-2a_MD	chr1	19387787	19387968	5	5	1	1	1	1	19387877	5	0
LINE-L1__HAL1-2a_MD	chr1	20252908	20253053	5	5	1	1	1	1	20252980	5	0
LINE-L1__HAL1-2a_MD	chr1	20259350	20259522	5	5	1	1	1	1	20259436	5	0
LINE-L1__HAL1-2a_MD	chr1	20708868	20709107	5	5	1	1	1	1	20708987	5	0
LINE-L1__HAL1-2a_MD	chr1	20789962	20790127	5	5	1	1	1	1	20790044	5	0
LINE-L1__HAL1-2a_MD	chr1	23952688	23952852	5	5	1	1	1	1	23952770	5	0
LINE-L1__HAL1-2a_MD	chr1	24538339	24538522	5	5	1	1	1	1	24538430	5	0
LINE-L1__HAL1-2a_MD	chr1	24538716	24538900	5	5	1	1	1	1	24538808	5	0
LINE-L1__HAL1-2a_MD	chr1	24538895	24539083	5	5	1	1	1	1	24538989	5	0
LINE-L1__HAL1-2a_MD	chr1	25362400	25362571	5	5	1	1	1	1	25362485	5	0
LINE-L1__HAL1-2a_MD	chr1	25362614	25362802	5	5	1	1	1	1	25362708	5	0
LINE-L1__HAL1-2a_MD	chr1	25362838	25362990	5	5	1	1	1	1	25362914	5	0
LINE-L1__HAL1-2a_MD	chr1	30191765	30191936	5	5	1	1	1	1	30191850	5	0
LINE-L1__HAL1-2a_MD	chr1	30811619	30811802	5	5	1	1	1	1	30811710	5	0
LINE-L1__HAL1-2a_MD	chr1	30937054	30937269	5	5	1	1	1	1	30937161	5	0
LINE-L1__HAL1-2a_MD	chr1	30961106	30961292	5	5	1	1	1	1	30961199	5	0
LINE-L1__HAL1-2a_MD	chr1	30961319	30961491	5	5	1	1	1	1	30961405	5	0
LINE-L1__HAL1-2a_MD	chr1	30961787	30961958	5	5	1	1	1	1	30961872	5	0
LINE-L1__HAL1-2a_MD	chr1	30992055	30992228	5	5	1	1	1	1	30992141	5	0
LINE-L1__HAL1-2a_MD	chr1	30992271	30992435	5	5	1	1	1	1	30992353	5	0
LINE-L1__HAL1-2a_MD	chr1	32937521	32937712	5	5	1	1	1	1	32937616	5	0
LINE-L1__HAL1-2a_MD	chr1	37350673	37350833	5	5	1	1	1	1	37350753	5	0
LINE-L1__HAL1-2a_MD	chr1	37350920	37351116	5	5	1	1	1	1	37351018	5	0
LINE-L1__HAL1-2a_MD	chr1	42010843	42010882	5	5	1	1	1	1	42010862	5	0
LINE-L1__HAL1-2a_MD	chr1	42011063	42011190	5	5	1	1	1	1	42011126	5	0
LINE-L1__HAL1-2a_MD	chr1	42167856	42167930	5	5	1	1	1	1	42167893	5	0
LINE-L1__HAL1-2a_MD	chr1	43523360	43523524	5	5	1	1	1	1	43523442	5	0
LINE-L1__HAL1-2a_MD	chr1	43523554	43523714	5	5	1	1	1	1	43523634	5	0
LINE-L1__HAL1-2a_MD	chr1	48208692	48208843	5	5	1	1	1	1	48208767	5	0
LINE-L1__HAL1-2a_MD	chr1	48209122	48209301	5	5	1	1	1	1	48209211	5	0
LINE-L1__HAL1-2a_MD	chr1	48402752	48402915	5	5	1	1	1	1	48402833	5	0
LINE-L1__HAL1-2a_MD	chr1	50834877	50835043	5	5	1	1	1	1	50834960	5	0
LINE-L1__HAL1-2a_MD	chr1	55468397	55468577	5	5	1	1	1	1	55468487	5	0
LINE-L1__HAL1-2a_MD	chr1	55468591	55468761	5	5	1	1	1	1	55468676	5	0
LINE-L1__HAL1-2a_MD	chr1	56621010	56621215	5	5	1	1	1	1	56621112	5	0
LINE-L1__HAL1-2a_MD	chr1	71000595	71000803	5	5	1	1	1	1	71000699	5	0
LINE-L1__HAL1-2a_MD	chr1	110663116	110663283	5	5	1	1	1	1	110663199	5	0
LINE-L1__HAL1-2a_MD	chr1	115846022	115846188	5	5	1	1	1	1	115846105	5	0
LINE-L1__HAL1-2a_MD	chr1	117009521	117009724	5	5	1	1	1	1	117009622	5	0
LINE-L1__HAL1-2a_MD	chr1	153215711	153215882	5	5	1	1	1	1	153215796	5	0
LINE-L1__HAL1-2a_MD	chr1	153216255	153216446	5	5	1	1	1	1	153216350	5	0
LINE-L1__HAL1-2a_MD	chr1	164444134	164444309	5	5	1	1	1	1	164444221	5	0
LINE-L1__HAL1-2a_MD	chr1	185928740	185928835	5	5	1	1	1	1	185928787	5	0
LINE-L1__HAL1-2a_MD	chr1	201639687	201639887	5	5	1	1	1	1	201639787	5	0
LINE-L1__HAL1-2a_MD	chr1	201639899	201640085	5	5	1	1	1	1	201639992	5	0
LINE-L1__HAL1-2a_MD	chr1	209014350	209014441	5	5	1	1	1	1	209014395	5	0
LINE-L1__HAL1-2a_MD	chr1	227148186	227148384	5	5	1	1	1	1	227148285	5	0
LINE-L1__HAL1-2a_MD	chr1	241198887	241199053	5	5	1	1	1	1	241198970	5	0
LINE-L1__HAL1-2a_MD	chr2	409700	409887	5	5	1	1	1	1	409793	5	0
LINE-L1__HAL1-2a_MD	chr2	409939	410233	5	5	1	1	1	1	410086	5	0
LINE-L1__HAL1-2a_MD	chr2	410250	410594	5	5	1	1	1	1	410422	5	0
LINE-L1__HAL1-2a_MD	chr2	747737	748165	5	5	1	1	1	1	747951	5	0
LINE-L1__HAL1-2a_MD	chr2	2577407	2577572	5	5	1	1	1	1	2577489	5	0
LINE-L1__HAL1-2a_MD	chr2	2577638	2577802	5	5	1	1	1	1	2577720	5	0
LINE-L1__HAL1-2a_MD	chr2	2577786	2577967	5	5	1	1	1	1	2577876	5	0
LINE-L1__HAL1-2a_MD	chr2	3318998	3319199	5	5	1	1	1	1	3319098	5	0
LINE-L1__HAL1-2a_MD	chr2	3319208	3319384	5	5	1	1	1	1	3319296	5	0
LINE-L1__HAL1-2a_MD	chr2	3319356	3319526	5	5	1	1	1	1	3319441	5	0
LINE-L1__HAL1-2a_MD	chr2	3319650	3319819	5	5	1	1	1	1	3319734	5	0
LINE-L1__HAL1-2a_MD	chr2	10112276	10112392	5	5	1	1	1	1	10112334	5	0
LINE-L1__HAL1-2a_MD	chr2	10330473	10330644	5	5	1	1	1	1	10330558	5	0
LINE-L1__HAL1-2a_MD	chr2	10330658	10330820	5	5	1	1	1	1	10330739	5	0
LINE-L1__HAL1-2a_MD	chr2	10330841	10331017	5	5	1	1	1	1	10330929	5	0
LINE-L1__HAL1-2a_MD	chr2	10451873	10452053	5	5	1	1	1	1	10451963	5	0
LINE-L1__HAL1-2a_MD	chr2	10452057	10452247	5	5	1	1	1	1	10452152	5	0
LINE-L1__HAL1-2a_MD	chr2	11093773	11093960	5	5	1	1	1	1	11093866	5	0
LINE-L1__HAL1-2a_MD	chr2	11093948	11094284	5	5	1	1	1	1	11094116	5	0
LINE-L1__HAL1-2a_MD	chr2	16591241	16591439	5	5	1	1	1	1	16591340	5	0
LINE-L1__HAL1-2a_MD	chr2	30099143	30099175	5	5	1	1	1	1	30099159	5	0
LINE-L1__HAL1-2a_MD	chr2	30099358	30099481	5	5	1	1	1	1	30099419	5	0
LINE-L1__HAL1-2a_MD	chr2	30099501	30099680	5	5	1	1	1	1	30099590	5	0
LINE-L1__HAL1-2a_MD	chr2	30164673	30164836	5	5	1	1	1	1	30164754	5	0
LINE-L1__HAL1-2a_MD	chr2	40648219	40648398	5	5	1	1	1	1	40648308	5	0
LINE-L1__HAL1-2a_MD	chr2	53110184	53110348	5	5	1	1	1	1	53110266	5	0
LINE-L1__HAL1-2a_MD	chr2	65669091	65669246	5	5	1	1	1	1	65669168	5	0
LINE-L1__HAL1-2a_MD	chr2	72034176	72034358	5	5	1	1	1	1	72034267	5	0
LINE-L1__HAL1-2a_MD	chr2	72034475	72034644	5	5	1	1	1	1	72034559	5	0
LINE-L1__HAL1-2a_MD	chr2	72060407	72060563	5	5	1	1	1	1	72060485	5	0
LINE-L1__HAL1-2a_MD	chr2	72060571	72060744	5	5	1	1	1	1	72060657	5	0
LINE-L1__HAL1-2a_MD	chr2	74557556	74557744	5	5	1	1	1	1	74557650	5	0
LINE-L1__HAL1-2a_MD	chr2	85136366	85136593	5	5	1	1	1	1	85136479	5	0
LINE-L1__HAL1-2a_MD	chr2	85137104	85137388	5	5	1	1	1	1	85137246	5	0
LINE-L1__HAL1-2a_MD	chr2	87663264	87663344	5	5	1	1	1	1	87663304	5	0
LINE-L1__HAL1-2a_MD	chr2	87735660	87735740	5	5	1	1	1	1	87735700	5	0
LINE-L1__HAL1-2a_MD	chr2	88537317	88537498	5	5	1	1	1	1	88537407	5	0
LINE-L1__HAL1-2a_MD	chr2	103229433	103229562	5	5	1	1	1	1	103229497	5	0
LINE-L1__HAL1-2a_MD	chr2	105441037	105441190	5	5	1	1	1	1	105441113	5	0
LINE-L1__HAL1-2a_MD	chr2	110810221	110810396	5	5	1	1	1	1	110810308	5	0
LINE-L1__HAL1-2a_MD	chr2	111076224	111076399	5	5	1	1	1	1	111076311	5	0
LINE-L1__HAL1-2a_MD	chr2	112009013	112009166	5	5	1	1	1	1	112009089	5	0
LINE-L1__HAL1-2a_MD	chr2	112271865	112271945	5	5	1	1	1	1	112271905	5	0
LINE-L1__HAL1-2a_MD	chr2	112424081	112424265	5	5	1	1	1	1	112424173	5	0
LINE-L1__HAL1-2a_MD	chr2	113656059	113656217	5	5	1	1	1	1	113656138	5	0
LINE-L1__HAL1-2a_MD	chr2	125274680	125274876	5	5	1	1	1	1	125274778	5	0
LINE-L1__HAL1-2a_MD	chr2	125275070	125275265	5	5	1	1	1	1	125275167	5	0
LINE-L1__HAL1-2a_MD	chr2	125275351	125275537	5	5	1	1	1	1	125275444	5	0
LINE-L1__HAL1-2a_MD	chr2	125529239	125529387	5	5	1	1	1	1	125529313	5	0
LINE-L1__HAL1-2a_MD	chr2	126049157	126049261	5	5	1	1	1	1	126049209	5	0
LINE-L1__HAL1-2a_MD	chr2	127591630	127591783	5	5	1	1	1	1	127591706	5	0
LINE-L1__HAL1-2a_MD	chr2	127591785	127591947	5	5	1	1	1	1	127591866	5	0
LINE-L1__HAL1-2a_MD	chr2	127591971	127592253	5	5	1	1	1	1	127592112	5	0
LINE-L1__HAL1-2a_MD	chr2	127592263	127592450	5	5	1	1	1	1	127592356	5	0
LINE-L1__HAL1-2a_MD	chr2	129097910	129098055	5	5	1	1	1	1	129097982	5	0
LINE-L1__HAL1-2a_MD	chr2	129098057	129098116	5	5	1	1	1	1	129098086	5	0
LINE-L1__HAL1-2a_MD	chr2	129098873	129098975	5	5	1	1	1	1	129098924	5	0
LINE-L1__HAL1-2a_MD	chr2	129356474	129356666	5	5	1	1	1	1	129356570	5	0
LINE-L1__HAL1-2a_MD	chr2	130067140	130067298	5	5	1	1	1	1	130067219	5	0
LINE-L1__HAL1-2a_MD	chr2	130067303	130067475	5	5	1	1	1	1	130067389	5	0
LINE-L1__HAL1-2a_MD	chr2	130493771	130493951	5	5	1	1	1	1	130493861	5	0
LINE-L1__HAL1-2a_MD	chr2	131062421	131062613	5	5	1	1	1	1	131062517	5	0
LINE-L1__HAL1-2a_MD	chr2	131482116	131482282	5	5	1	1	1	1	131482199	5	0
LINE-L1__HAL1-2a_MD	chr2	131482283	131482402	5	5	1	1	1	1	131482342	5	0
LINE-L1__HAL1-2a_MD	chr2	131482807	131482855	5	5	1	1	1	1	131482831	5	0
LINE-L1__HAL1-2a_MD	chr2	134538403	134538598	5	5	1	1	1	1	134538500	5	0
LINE-L1__HAL1-2a_MD	chr2	134538677	134538863	5	5	1	1	1	1	134538770	5	0
LINE-L1__HAL1-2a_MD	chr2	134538871	134539026	5	5	1	1	1	1	134538948	5	0
LINE-L1__HAL1-2a_MD	chr2	136570595	136570729	5	5	1	1	1	1	136570662	5	0
LINE-L1__HAL1-2a_MD	chr2	136570803	136571003	5	5	1	1	1	1	136570903	5	0
LINE-L1__HAL1-2a_MD	chr2	152930775	152930950	5	5	1	1	1	1	152930862	5	0
LINE-L1__HAL1-2a_MD	chr2	152931109	152931273	5	5	1	1	1	1	152931191	5	0
LINE-L1__HAL1-2a_MD	chr2	157292683	157292853	5	5	1	1	1	1	157292768	5	0
LINE-L1__HAL1-2a_MD	chr2	174562470	174562646	5	5	1	1	1	1	174562558	5	0
LINE-L1__HAL1-2a_MD	chr2	174562657	174562834	5	5	1	1	1	1	174562745	5	0
LINE-L1__HAL1-2a_MD	chr2	174562862	174563042	5	5	1	1	1	1	174562952	5	0
LINE-L1__HAL1-2a_MD	chr2	174563043	174563209	5	5	1	1	1	1	174563126	5	0
LINE-L1__HAL1-2a_MD	chr2	218854873	218855020	5	5	1	1	1	1	218854946	5	0
LINE-L1__HAL1-2a_MD	chr2	218855182	218855352	5	5	1	1	1	1	218855267	5	0
LINE-L1__HAL1-2a_MD	chr2	219836735	219836888	5	5	1	1	1	1	219836811	5	0
LINE-L1__HAL1-2a_MD	chr2	220625273	220625430	5	5	1	1	1	1	220625351	5	0
LINE-L1__HAL1-2a_MD	chr2	229343817	229344017	5	5	1	1	1	1	229343917	5	0
LINE-L1__HAL1-2a_MD	chr2	230427606	230427778	5	5	1	1	1	1	230427692	5	0
LINE-L1__HAL1-2a_MD	chr2	230427875	230428074	5	5	1	1	1	1	230427974	5	0
LINE-L1__HAL1-2a_MD	chr2	230428410	230428577	5	5	1	1	1	1	230428493	5	0
LINE-L1__HAL1-2a_MD	chr2	230429054	230429236	5	5	1	1	1	1	230429145	5	0
LINE-L1__HAL1-2a_MD	chr2	231870018	231870067	5	5	1	1	1	1	231870042	5	0
LINE-L1__HAL1-2a_MD	chr2	231870247	231870374	5	5	1	1	1	1	231870310	5	0
LINE-L1__HAL1-2a_MD	chr2	235596786	235596968	5	5	1	1	1	1	235596877	5	0
LINE-L1__HAL1-2a_MD	chr2	235731232	235731405	5	5	1	1	1	1	235731318	5	0
LINE-L1__HAL1-2a_MD	chr2	235731665	235731841	5	5	1	1	1	1	235731753	5	0
LINE-L1__HAL1-2a_MD	chr2	236077879	236078076	5	5	1	1	1	1	236077977	5	0
LINE-L1__HAL1-2a_MD	chr2	236711635	236711816	5	5	1	1	1	1	236711725	5	0
LINE-L1__HAL1-2a_MD	chr2	236907257	236907476	5	5	1	1	1	1	236907366	5	0
LINE-L1__HAL1-2a_MD	chr2	236907699	236907878	5	5	1	1	1	1	236907788	5	0
LINE-L1__HAL1-2a_MD	chr2	239429188	239429361	5	5	1	1	1	1	239429274	5	0
LINE-L1__HAL1-2a_MD	chr2	239789371	239789544	5	5	1	1	1	1	239789457	5	0
LINE-L1__HAL1-2a_MD	chr2	242911003	242911186	5	5	1	1	1	1	242911094	5	0
LINE-L1__HAL1-2a_MD	chr2	242911197	242911378	5	5	1	1	1	1	242911287	5	0
LINE-L1__HAL1-2a_MD	chr2	242911460	242911645	5	5	1	1	1	1	242911552	5	0
LINE-L1__HAL1-2a_MD	chr2	242912081	242912274	5	5	1	1	1	1	242912177	5	0
LINE-L1__HAL1-2a_MD	chr3	1665356	1665501	5	5	1	1	1	1	1665428	5	0
LINE-L1__HAL1-2a_MD	chr3	8642160	8642298	5	5	1	1	1	1	8642229	5	0
LINE-L1__HAL1-2a_MD	chr3	14196821	14197008	5	5	1	1	1	1	14196914	5	0
LINE-L1__HAL1-2a_MD	chr3	16124306	16124386	5	5	1	1	1	1	16124346	5	0
LINE-L1__HAL1-2a_MD	chr3	16124540	16124637	5	5	1	1	1	1	16124588	5	0
LINE-L1__HAL1-2a_MD	chr3	33927302	33927453	5	5	1	1	1	1	33927377	5	0
LINE-L1__HAL1-2a_MD	chr3	38128834	38129159	5	5	1	1	1	1	38128996	5	0
LINE-L1__HAL1-2a_MD	chr3	46933164	46933331	5	5	1	1	1	1	46933247	5	0
LINE-L1__HAL1-2a_MD	chr3	55898783	55898972	5	5	1	1	1	1	55898877	5	0
LINE-L1__HAL1-2a_MD	chr3	58689674	58689840	5	5	1	1	1	1	58689757	5	0
LINE-L1__HAL1-2a_MD	chr3	62027385	62027531	5	5	1	1	1	1	62027458	5	0
LINE-L1__HAL1-2a_MD	chr3	72700639	72700848	5	5	1	1	1	1	72700743	5	0
LINE-L1__HAL1-2a_MD	chr3	72700817	72700995	5	5	1	1	1	1	72700906	5	0
LINE-L1__HAL1-2a_MD	chr3	97707994	97708128	5	5	1	1	1	1	97708061	5	0
LINE-L1__HAL1-2a_MD	chr3	126880956	126881120	5	5	1	1	1	1	126881038	5	0
LINE-L1__HAL1-2a_MD	chr3	127282715	127282900	5	5	1	1	1	1	127282807	5	0
LINE-L1__HAL1-2a_MD	chr3	128163665	128163845	5	5	1	1	1	1	128163755	5	0
LINE-L1__HAL1-2a_MD	chr3	129955248	129955418	5	5	1	1	1	1	129955333	5	0
LINE-L1__HAL1-2a_MD	chr3	130179422	130179622	5	5	1	1	1	1	130179522	5	0
LINE-L1__HAL1-2a_MD	chr3	137769453	137769644	5	5	1	1	1	1	137769548	5	0
LINE-L1__HAL1-2a_MD	chr3	137769656	137769849	5	5	1	1	1	1	137769752	5	0
LINE-L1__HAL1-2a_MD	chr3	156435524	156435609	5	5	1	1	1	1	156435566	5	0
LINE-L1__HAL1-2a_MD	chr3	156436080	156436169	5	5	1	1	1	1	156436124	5	0
LINE-L1__HAL1-2a_MD	chr3	170303252	170303508	5	5	1	1	1	1	170303380	5	0
LINE-L1__HAL1-2a_MD	chr3	186073152	186073309	5	5	1	1	1	1	186073230	5	0
LINE-L1__HAL1-2a_MD	chr3	194566650	194566863	5	5	1	1	1	1	194566756	5	0
LINE-L1__HAL1-2a_MD	chr4	1318089	1318278	5	5	1	1	1	1	1318183	5	0
LINE-L1__HAL1-2a_MD	chr4	1515781	1515968	5	5	1	1	1	1	1515874	5	0
LINE-L1__HAL1-2a_MD	chr4	1515975	1516152	5	5	1	1	1	1	1516063	5	0
LINE-L1__HAL1-2a_MD	chr4	1516554	1516728	5	5	1	1	1	1	1516641	5	0
LINE-L1__HAL1-2a_MD	chr4	1516760	1516926	5	5	1	1	1	1	1516843	5	0
LINE-L1__HAL1-2a_MD	chr4	1517032	1517202	5	5	1	1	1	1	1517117	5	0
LINE-L1__HAL1-2a_MD	chr4	2962386	2962509	5	5	1	1	1	1	2962447	5	0
LINE-L1__HAL1-2a_MD	chr4	4771915	4772066	5	5	1	1	1	1	4771990	5	0
LINE-L1__HAL1-2a_MD	chr4	4772068	4772247	5	5	1	1	1	1	4772157	5	0
LINE-L1__HAL1-2a_MD	chr4	4772358	4772525	5	5	1	1	1	1	4772441	5	0
LINE-L1__HAL1-2a_MD	chr4	4772526	4772704	5	5	1	1	1	1	4772615	5	0
LINE-L1__HAL1-2a_MD	chr4	4795010	4795197	5	5	1	1	1	1	4795103	5	0
LINE-L1__HAL1-2a_MD	chr4	4795437	4795616	5	5	1	1	1	1	4795526	5	0
LINE-L1__HAL1-2a_MD	chr4	5529893	5530037	5	5	1	1	1	1	5529965	5	0
LINE-L1__HAL1-2a_MD	chr4	5530042	5530167	5	5	1	1	1	1	5530104	5	0
LINE-L1__HAL1-2a_MD	chr4	5530351	5530505	5	5	1	1	1	1	5530428	5	0
LINE-L1__HAL1-2a_MD	chr4	5530540	5530668	5	5	1	1	1	1	5530604	5	0
LINE-L1__HAL1-2a_MD	chr4	5671883	5672069	5	5	1	1	1	1	5671976	5	0
LINE-L1__HAL1-2a_MD	chr4	5672188	5672368	5	5	1	1	1	1	5672278	5	0
LINE-L1__HAL1-2a_MD	chr4	5672371	5672496	5	5	1	1	1	1	5672433	5	0
LINE-L1__HAL1-2a_MD	chr4	5672497	5672685	5	5	1	1	1	1	5672591	5	0
LINE-L1__HAL1-2a_MD	chr4	5821952	5822085	5	5	1	1	1	1	5822018	5	0
LINE-L1__HAL1-2a_MD	chr4	5858423	5858576	5	5	1	1	1	1	5858499	5	0
LINE-L1__HAL1-2a_MD	chr4	5858586	5858752	5	5	1	1	1	1	5858669	5	0
LINE-L1__HAL1-2a_MD	chr4	5858914	5859109	5	5	1	1	1	1	5859011	5	0
LINE-L1__HAL1-2a_MD	chr4	6005756	6005813	5	5	1	1	1	1	6005784	5	0
LINE-L1__HAL1-2a_MD	chr4	6005992	6006139	5	5	1	1	1	1	6006065	5	0
LINE-L1__HAL1-2a_MD	chr4	6006142	6006200	5	5	1	1	1	1	6006171	5	0
LINE-L1__HAL1-2a_MD	chr4	6006431	6006595	5	5	1	1	1	1	6006513	5	0
LINE-L1__HAL1-2a_MD	chr4	6172242	6172501	5	5	1	1	1	1	6172371	5	0
LINE-L1__HAL1-2a_MD	chr4	6172823	6172982	5	5	1	1	1	1	6172902	5	0
LINE-L1__HAL1-2a_MD	chr4	6512968	6513220	5	5	1	1	1	1	6513094	5	0
LINE-L1__HAL1-2a_MD	chr4	6513221	6513231	5	5	1	1	1	1	6513226	5	0
LINE-L1__HAL1-2a_MD	chr4	6513412	6513546	5	5	1	1	1	1	6513479	5	0
LINE-L1__HAL1-2a_MD	chr4	6513727	6513810	5	5	1	1	1	1	6513768	5	0
LINE-L1__HAL1-2a_MD	chr4	6513991	6514086	5	5	1	1	1	1	6514038	5	0
LINE-L1__HAL1-2a_MD	chr4	6514431	6514470	5	5	1	1	1	1	6514450	5	0
LINE-L1__HAL1-2a_MD	chr4	6535744	6535917	5	5	1	1	1	1	6535830	5	0
LINE-L1__HAL1-2a_MD	chr4	7365708	7365888	5	5	1	1	1	1	7365798	5	0
LINE-L1__HAL1-2a_MD	chr4	7567053	7567246	5	5	1	1	1	1	7567149	5	0
LINE-L1__HAL1-2a_MD	chr4	7567254	7567441	5	5	1	1	1	1	7567347	5	0
LINE-L1__HAL1-2a_MD	chr4	7567511	7567685	5	5	1	1	1	1	7567598	5	0
LINE-L1__HAL1-2a_MD	chr4	7567696	7567860	5	5	1	1	1	1	7567778	5	0
LINE-L1__HAL1-2a_MD	chr4	7567899	7568089	5	5	1	1	1	1	7567994	5	0
LINE-L1__HAL1-2a_MD	chr4	7725940	7726129	5	5	1	1	1	1	7726034	5	0
LINE-L1__HAL1-2a_MD	chr4	7726140	7726446	5	5	1	1	1	1	7726293	5	0
LINE-L1__HAL1-2a_MD	chr4	7726453	7726639	5	5	1	1	1	1	7726546	5	0
LINE-L1__HAL1-2a_MD	chr4	7726682	7726811	5	5	1	1	1	1	7726746	5	0
LINE-L1__HAL1-2a_MD	chr4	8322471	8322540	5	5	1	1	1	1	8322505	5	0
LINE-L1__HAL1-2a_MD	chr4	8322905	8323069	5	5	1	1	1	1	8322987	5	0
LINE-L1__HAL1-2a_MD	chr4	8323072	8323145	5	5	1	1	1	1	8323108	5	0
LINE-L1__HAL1-2a_MD	chr4	8323149	8323309	5	5	1	1	1	1	8323229	5	0
LINE-L1__HAL1-2a_MD	chr4	8843511	8843696	5	5	1	1	1	1	8843603	5	0
LINE-L1__HAL1-2a_MD	chr4	8843714	8843888	5	5	1	1	1	1	8843801	5	0
LINE-L1__HAL1-2a_MD	chr4	8843957	8844138	5	5	1	1	1	1	8844047	5	0
LINE-L1__HAL1-2a_MD	chr4	16870437	16870611	5	5	1	1	1	1	16870524	5	0
LINE-L1__HAL1-2a_MD	chr4	20325891	20325993	5	5	1	1	1	1	20325942	5	0
LINE-L1__HAL1-2a_MD	chr4	38734945	38735102	5	5	1	1	1	1	38735023	5	0
LINE-L1__HAL1-2a_MD	chr4	38735281	38735357	5	5	1	1	1	1	38735319	5	0
LINE-L1__HAL1-2a_MD	chr4	38735358	38735531	5	5	1	1	1	1	38735444	5	0
LINE-L1__HAL1-2a_MD	chr4	63645361	63645434	5	5	1	1	1	1	63645397	5	0
LINE-L1__HAL1-2a_MD	chr4	126823754	126823845	5	5	1	1	1	1	126823799	5	0
LINE-L1__HAL1-2a_MD	chr4	140743215	140743386	5	5	1	1	1	1	140743300	5	0
LINE-L1__HAL1-2a_MD	chr4	154583780	154583968	5	5	1	1	1	1	154583874	5	0
LINE-L1__HAL1-2a_MD	chr4	154584340	154584533	5	5	1	1	1	1	154584436	5	0
LINE-L1__HAL1-2a_MD	chr4	167656057	167656218	5	5	1	1	1	1	167656137	5	0
LINE-L1__HAL1-2a_MD	chr4	188830442	188830611	5	5	1	1	1	1	188830526	5	0
LINE-L1__HAL1-2a_MD	chr5	2677826	2677964	5	5	1	1	1	1	2677895	5	0
LINE-L1__HAL1-2a_MD	chr5	2677966	2678161	5	5	1	1	1	1	2678063	5	0
LINE-L1__HAL1-2a_MD	chr5	3446670	3446843	5	5	1	1	1	1	3446756	5	0
LINE-L1__HAL1-2a_MD	chr5	3785021	3785303	5	5	1	1	1	1	3785162	5	0
LINE-L1__HAL1-2a_MD	chr5	3786361	3786547	5	5	1	1	1	1	3786454	5	0
LINE-L1__HAL1-2a_MD	chr5	5540241	5540423	5	5	1	1	1	1	5540332	5	0
LINE-L1__HAL1-2a_MD	chr5	6308798	6308954	5	5	1	1	1	1	6308876	5	0
LINE-L1__HAL1-2a_MD	chr5	6309061	6309209	5	5	1	1	1	1	6309135	5	0
LINE-L1__HAL1-2a_MD	chr5	6386552	6386616	5	5	1	1	1	1	6386584	5	0
LINE-L1__HAL1-2a_MD	chr5	7215157	7215342	5	5	1	1	1	1	7215249	5	0
LINE-L1__HAL1-2a_MD	chr5	7215348	7215534	5	5	1	1	1	1	7215441	5	0
LINE-L1__HAL1-2a_MD	chr5	7741887	7742067	5	5	1	1	1	1	7741977	5	0
LINE-L1__HAL1-2a_MD	chr5	10670223	10670402	5	5	1	1	1	1	10670312	5	0
LINE-L1__HAL1-2a_MD	chr5	10670405	10670579	5	5	1	1	1	1	10670492	5	0
LINE-L1__HAL1-2a_MD	chr5	15097754	15097921	5	5	1	1	1	1	15097837	5	0
LINE-L1__HAL1-2a_MD	chr5	16697392	16697528	5	5	1	1	1	1	16697460	5	0
LINE-L1__HAL1-2a_MD	chr5	16697819	16697928	5	5	1	1	1	1	16697873	5	0
LINE-L1__HAL1-2a_MD	chr5	20370261	20370402	5	5	1	1	1	1	20370331	5	0
LINE-L1__HAL1-2a_MD	chr5	33626603	33626795	5	5	1	1	1	1	33626699	5	0
LINE-L1__HAL1-2a_MD	chr5	33626833	33627016	5	5	1	1	1	1	33626924	5	0
LINE-L1__HAL1-2a_MD	chr5	33627057	33627249	5	5	1	1	1	1	33627153	5	0
LINE-L1__HAL1-2a_MD	chr5	35708659	35708838	5	5	1	1	1	1	35708748	5	0
LINE-L1__HAL1-2a_MD	chr5	36521254	36521469	5	5	1	1	1	1	36521361	5	0
LINE-L1__HAL1-2a_MD	chr5	36521479	36521658	5	5	1	1	1	1	36521568	5	0
LINE-L1__HAL1-2a_MD	chr5	45331885	45331985	5	5	1	1	1	1	45331935	5	0
LINE-L1__HAL1-2a_MD	chr5	92826563	92826733	5	5	1	1	1	1	92826648	5	0
LINE-L1__HAL1-2a_MD	chr5	148582505	148582660	5	5	1	1	1	1	148582582	5	0
LINE-L1__HAL1-2a_MD	chr5	148582994	148583164	5	5	1	1	1	1	148583079	5	0
LINE-L1__HAL1-2a_MD	chr5	148583170	148583326	5	5	1	1	1	1	148583248	5	0
LINE-L1__HAL1-2a_MD	chr5	169267560	169267675	5	5	1	1	1	1	169267617	5	0
LINE-L1__HAL1-2a_MD	chr5	169943939	169944037	5	5	1	1	1	1	169943988	5	0
LINE-L1__HAL1-2a_MD	chr5	169944422	169944505	5	5	1	1	1	1	169944463	5	0
LINE-L1__HAL1-2a_MD	chr5	169944540	169944712	5	5	1	1	1	1	169944626	5	0
LINE-L1__HAL1-2a_MD	chr5	169977645	169977840	5	5	1	1	1	1	169977742	5	0
LINE-L1__HAL1-2a_MD	chr5	172321054	172321180	5	5	1	1	1	1	172321117	5	0
LINE-L1__HAL1-2a_MD	chr5	173237552	173237718	5	5	1	1	1	1	173237635	5	0
LINE-L1__HAL1-2a_MD	chr5	173238022	173238191	5	5	1	1	1	1	173238106	5	0
LINE-L1__HAL1-2a_MD	chr5	173596705	173596853	5	5	1	1	1	1	173596779	5	0
LINE-L1__HAL1-2a_MD	chr5	173791039	173791210	5	5	1	1	1	1	173791124	5	0
LINE-L1__HAL1-2a_MD	chr5	174461766	174461864	5	5	1	1	1	1	174461815	5	0
LINE-L1__HAL1-2a_MD	chr5	174461865	174462039	5	5	1	1	1	1	174461952	5	0
LINE-L1__HAL1-2a_MD	chr5	175047515	175047670	5	5	1	1	1	1	175047592	5	0
LINE-L1__HAL1-2a_MD	chr5	175048274	175048393	5	5	1	1	1	1	175048333	5	0
LINE-L1__HAL1-2a_MD	chr5	175543084	175543184	5	5	1	1	1	1	175543134	5	0
LINE-L1__HAL1-2a_MD	chr5	176018691	176018842	5	5	1	1	1	1	176018766	5	0
LINE-L1__HAL1-2a_MD	chr5	177148982	177149082	5	5	1	1	1	1	177149032	5	0
LINE-L1__HAL1-2a_MD	chr5	177476151	177476251	5	5	1	1	1	1	177476201	5	0
LINE-L1__HAL1-2a_MD	chr5	178182993	178183145	5	5	1	1	1	1	178183069	5	0
LINE-L1__HAL1-2a_MD	chr5	179132658	179132812	5	5	1	1	1	1	179132735	5	0
LINE-L1__HAL1-2a_MD	chr6	1054239	1054399	5	5	1	1	1	1	1054319	5	0
LINE-L1__HAL1-2a_MD	chr6	1478187	1478283	5	5	1	1	1	1	1478235	5	0
LINE-L1__HAL1-2a_MD	chr6	8827794	8827965	5	5	1	1	1	1	8827879	5	0
LINE-L1__HAL1-2a_MD	chr6	8828212	8828381	5	5	1	1	1	1	8828296	5	0
LINE-L1__HAL1-2a_MD	chr6	21924959	21925121	5	5	1	1	1	1	21925040	5	0
LINE-L1__HAL1-2a_MD	chr6	24927049	24927222	5	5	1	1	1	1	24927135	5	0
LINE-L1__HAL1-2a_MD	chr6	24927263	24927359	5	5	1	1	1	1	24927311	5	0
LINE-L1__HAL1-2a_MD	chr6	24927578	24927625	5	5	1	1	1	1	24927601	5	0
LINE-L1__HAL1-2a_MD	chr6	27056036	27056163	5	5	1	1	1	1	27056099	5	0
LINE-L1__HAL1-2a_MD	chr6	35137247	35137376	5	5	1	1	1	1	35137311	5	0
LINE-L1__HAL1-2a_MD	chr6	35137555	35137600	5	5	1	1	1	1	35137577	5	0
LINE-L1__HAL1-2a_MD	chr6	40622741	40622912	5	5	1	1	1	1	40622826	5	0
LINE-L1__HAL1-2a_MD	chr6	40635533	40635742	5	5	1	1	1	1	40635637	5	0
LINE-L1__HAL1-2a_MD	chr6	43261915	43262089	5	5	1	1	1	1	43262002	5	0
LINE-L1__HAL1-2a_MD	chr6	43262091	43262263	5	5	1	1	1	1	43262177	5	0
LINE-L1__HAL1-2a_MD	chr6	43262373	43262546	5	5	1	1	1	1	43262459	5	0
LINE-L1__HAL1-2a_MD	chr6	44474915	44475120	5	5	1	1	1	1	44475017	5	0
LINE-L1__HAL1-2a_MD	chr6	46007914	46008105	5	5	1	1	1	1	46008009	5	0
LINE-L1__HAL1-2a_MD	chr6	46008228	46008413	5	5	1	1	1	1	46008320	5	0
LINE-L1__HAL1-2a_MD	chr6	50654185	50654472	5	5	1	1	1	1	50654328	5	0
LINE-L1__HAL1-2a_MD	chr6	92796853	92797038	5	5	1	1	1	1	92796945	5	0
LINE-L1__HAL1-2a_MD	chr6	157641097	157641291	5	5	1	1	1	1	157641194	5	0
LINE-L1__HAL1-2a_MD	chr6	157691318	157691483	5	5	1	1	1	1	157691400	5	0
LINE-L1__HAL1-2a_MD	chr6	157691569	157691765	5	5	1	1	1	1	157691667	5	0
LINE-L1__HAL1-2a_MD	chr6	160639471	160639616	5	5	1	1	1	1	160639543	5	0
LINE-L1__HAL1-2a_MD	chr6	160639595	160639751	5	5	1	1	1	1	160639673	5	0
LINE-L1__HAL1-2a_MD	chr6	160640298	160640434	5	5	1	1	1	1	160640366	5	0
LINE-L1__HAL1-2a_MD	chr6	160955907	160956084	5	5	1	1	1	1	160955995	5	0
LINE-L1__HAL1-2a_MD	chr6	160956090	160956241	5	5	1	1	1	1	160956165	5	0
LINE-L1__HAL1-2a_MD	chr6	160956249	160956423	5	5	1	1	1	1	160956336	5	0
LINE-L1__HAL1-2a_MD	chr6	160956484	160956670	5	5	1	1	1	1	160956577	5	0
LINE-L1__HAL1-2a_MD	chr6	160956672	160956768	5	5	1	1	1	1	160956720	5	0
LINE-L1__HAL1-2a_MD	chr6	161089603	161089776	5	5	1	1	1	1	161089689	5	0
LINE-L1__HAL1-2a_MD	chr6	161090123	161090284	5	5	1	1	1	1	161090203	5	0
LINE-L1__HAL1-2a_MD	chr6	161170738	161170978	5	5	1	1	1	1	161170858	5	0
LINE-L1__HAL1-2a_MD	chr6	166829435	166829611	5	5	1	1	1	1	166829523	5	0
LINE-L1__HAL1-2a_MD	chr6	167928384	167928550	5	5	1	1	1	1	167928467	5	0
LINE-L1__HAL1-2a_MD	chr6	167928551	167928655	5	5	1	1	1	1	167928603	5	0
LINE-L1__HAL1-2a_MD	chr6	167928656	167928829	5	5	1	1	1	1	167928742	5	0
LINE-L1__HAL1-2a_MD	chr6	168042091	168042410	5	5	1	1	1	1	168042250	5	0
LINE-L1__HAL1-2a_MD	chr6	168520257	168520419	5	5	1	1	1	1	168520338	5	0
LINE-L1__HAL1-2a_MD	chr6	168520459	168520661	5	5	1	1	1	1	168520560	5	0
LINE-L1__HAL1-2a_MD	chr6	170498985	170499167	5	5	1	1	1	1	170499076	5	0
LINE-L1__HAL1-2a_MD	chr7	395595	395756	5	5	1	1	1	1	395675	5	0
LINE-L1__HAL1-2a_MD	chr7	395775	395817	5	5	1	1	1	1	395796	5	0
LINE-L1__HAL1-2a_MD	chr7	395998	396131	5	5	1	1	1	1	396064	5	0
LINE-L1__HAL1-2a_MD	chr7	605782	605910	5	5	1	1	1	1	605846	5	0
LINE-L1__HAL1-2a_MD	chr7	605911	606098	5	5	1	1	1	1	606004	5	0
LINE-L1__HAL1-2a_MD	chr7	606255	606416	5	5	1	1	1	1	606335	5	0
LINE-L1__HAL1-2a_MD	chr7	606991	607199	5	5	1	1	1	1	607095	5	0
LINE-L1__HAL1-2a_MD	chr7	628030	628136	5	5	1	1	1	1	628083	5	0
LINE-L1__HAL1-2a_MD	chr7	628155	628490	5	5	1	1	1	1	628322	5	0
LINE-L1__HAL1-2a_MD	chr7	693459	693624	5	5	1	1	1	1	693541	5	0
LINE-L1__HAL1-2a_MD	chr7	693644	693801	5	5	1	1	1	1	693722	5	0
LINE-L1__HAL1-2a_MD	chr7	693811	693990	5	5	1	1	1	1	693900	5	0
LINE-L1__HAL1-2a_MD	chr7	694203	694394	5	5	1	1	1	1	694298	5	0
LINE-L1__HAL1-2a_MD	chr7	706531	706665	5	5	1	1	1	1	706598	5	0
LINE-L1__HAL1-2a_MD	chr7	1348972	1349132	5	5	1	1	1	1	1349052	5	0
LINE-L1__HAL1-2a_MD	chr7	1349202	1349389	5	5	1	1	1	1	1349295	5	0
LINE-L1__HAL1-2a_MD	chr7	1349390	1349510	5	5	1	1	1	1	1349450	5	0
LINE-L1__HAL1-2a_MD	chr7	2141888	2142175	5	5	1	1	1	1	2142031	5	0
LINE-L1__HAL1-2a_MD	chr7	3159730	3159922	5	5	1	1	1	1	3159826	5	0
LINE-L1__HAL1-2a_MD	chr7	3275264	3275439	5	5	1	1	1	1	3275351	5	0
LINE-L1__HAL1-2a_MD	chr7	3309934	3310050	5	5	1	1	1	1	3309992	5	0
LINE-L1__HAL1-2a_MD	chr7	3310051	3310245	5	5	1	1	1	1	3310148	5	0
LINE-L1__HAL1-2a_MD	chr7	14214258	14214465	5	5	1	1	1	1	14214361	5	0
LINE-L1__HAL1-2a_MD	chr7	15146128	15146246	5	5	1	1	1	1	15146187	5	0
LINE-L1__HAL1-2a_MD	chr7	21527345	21527436	5	5	1	1	1	1	21527390	5	0
LINE-L1__HAL1-2a_MD	chr7	35355001	35355192	5	5	1	1	1	1	35355096	5	0
LINE-L1__HAL1-2a_MD	chr7	39041440	39041587	5	5	1	1	1	1	39041513	5	0
LINE-L1__HAL1-2a_MD	chr7	44294264	44294417	5	5	1	1	1	1	44294340	5	0
LINE-L1__HAL1-2a_MD	chr7	47076616	47076789	5	5	1	1	1	1	47076702	5	0
LINE-L1__HAL1-2a_MD	chr7	47299908	47300083	5	5	1	1	1	1	47299995	5	0
LINE-L1__HAL1-2a_MD	chr7	47402440	47402614	5	5	1	1	1	1	47402527	5	0
LINE-L1__HAL1-2a_MD	chr7	47402700	47402868	5	5	1	1	1	1	47402784	5	0
LINE-L1__HAL1-2a_MD	chr7	47554953	47555123	5	5	1	1	1	1	47555038	5	0
LINE-L1__HAL1-2a_MD	chr7	47555129	47555235	5	5	1	1	1	1	47555182	5	0
LINE-L1__HAL1-2a_MD	chr7	47555236	47555416	5	5	1	1	1	1	47555326	5	0
LINE-L1__HAL1-2a_MD	chr7	47739509	47739688	5	5	1	1	1	1	47739598	5	0
LINE-L1__HAL1-2a_MD	chr7	47739825	47739996	5	5	1	1	1	1	47739910	5	0
LINE-L1__HAL1-2a_MD	chr7	48034332	48034477	5	5	1	1	1	1	48034404	5	0
LINE-L1__HAL1-2a_MD	chr7	48232983	48233123	5	5	1	1	1	1	48233053	5	0
LINE-L1__HAL1-2a_MD	chr7	48233203	48233381	5	5	1	1	1	1	48233292	5	0
LINE-L1__HAL1-2a_MD	chr7	48233636	48233805	5	5	1	1	1	1	48233720	5	0
LINE-L1__HAL1-2a_MD	chr7	48233846	48234026	5	5	1	1	1	1	48233936	5	0
LINE-L1__HAL1-2a_MD	chr7	49698967	49699140	5	5	1	1	1	1	49699053	5	0
LINE-L1__HAL1-2a_MD	chr7	49699316	49699505	5	5	1	1	1	1	49699410	5	0
LINE-L1__HAL1-2a_MD	chr7	51085834	51085999	5	5	1	1	1	1	51085916	5	0
LINE-L1__HAL1-2a_MD	chr7	51429952	51430111	5	5	1	1	1	1	51430031	5	0
LINE-L1__HAL1-2a_MD	chr7	54196802	54196991	5	5	1	1	1	1	54196896	5	0
LINE-L1__HAL1-2a_MD	chr7	55234611	55234798	5	5	1	1	1	1	55234704	5	0
LINE-L1__HAL1-2a_MD	chr7	55234905	55235139	5	5	1	1	1	1	55235022	5	0
LINE-L1__HAL1-2a_MD	chr7	55235238	55235403	5	5	1	1	1	1	55235320	5	0
LINE-L1__HAL1-2a_MD	chr7	57696145	57696288	5	5	1	1	1	1	57696216	5	0
LINE-L1__HAL1-2a_MD	chr7	57696292	57696457	5	5	1	1	1	1	57696374	5	0
LINE-L1__HAL1-2a_MD	chr7	57696495	57696699	5	5	1	1	1	1	57696597	5	0
LINE-L1__HAL1-2a_MD	chr7	57888254	57888458	5	5	1	1	1	1	57888356	5	0
LINE-L1__HAL1-2a_MD	chr7	57888496	57888661	5	5	1	1	1	1	57888578	5	0
LINE-L1__HAL1-2a_MD	chr7	62507124	62507325	5	5	1	1	1	1	62507224	5	0
LINE-L1__HAL1-2a_MD	chr7	66940275	66940451	5	5	1	1	1	1	66940363	5	0
LINE-L1__HAL1-2a_MD	chr7	66940454	66940546	5	5	1	1	1	1	66940500	5	0
LINE-L1__HAL1-2a_MD	chr7	66940725	66940747	5	5	1	1	1	1	66940736	5	0
LINE-L1__HAL1-2a_MD	chr7	67956574	67956757	5	5	1	1	1	1	67956665	5	0
LINE-L1__HAL1-2a_MD	chr7	67957194	67957354	5	5	1	1	1	1	67957274	5	0
LINE-L1__HAL1-2a_MD	chr7	67957397	67957544	5	5	1	1	1	1	67957470	5	0
LINE-L1__HAL1-2a_MD	chr7	77045725	77045872	5	5	1	1	1	1	77045798	5	0
LINE-L1__HAL1-2a_MD	chr7	93211636	93211799	5	5	1	1	1	1	93211717	5	0
LINE-L1__HAL1-2a_MD	chr7	93211906	93212075	5	5	1	1	1	1	93211990	5	0
LINE-L1__HAL1-2a_MD	chr7	133092814	133093004	5	5	1	1	1	1	133092909	5	0
LINE-L1__HAL1-2a_MD	chr7	136657834	136657998	5	5	1	1	1	1	136657916	5	0
LINE-L1__HAL1-2a_MD	chr7	136658158	136658337	5	5	1	1	1	1	136658247	5	0
LINE-L1__HAL1-2a_MD	chr7	140354545	140354705	5	5	1	1	1	1	140354625	5	0
LINE-L1__HAL1-2a_MD	chr7	140354849	140354992	5	5	1	1	1	1	140354920	5	0
LINE-L1__HAL1-2a_MD	chr7	141036986	141037151	5	5	1	1	1	1	141037068	5	0
LINE-L1__HAL1-2a_MD	chr7	141847920	141848092	5	5	1	1	1	1	141848006	5	0
LINE-L1__HAL1-2a_MD	chr7	141848064	141848241	5	5	1	1	1	1	141848152	5	0
LINE-L1__HAL1-2a_MD	chr7	151406384	151406560	5	5	1	1	1	1	151406472	5	0
LINE-L1__HAL1-2a_MD	chr7	151538396	151538580	5	5	1	1	1	1	151538488	5	0
LINE-L1__HAL1-2a_MD	chr7	151538700	151538877	5	5	1	1	1	1	151538788	5	0
LINE-L1__HAL1-2a_MD	chr7	151539577	151539763	5	5	1	1	1	1	151539670	5	0
LINE-L1__HAL1-2a_MD	chr7	152611423	152611601	5	5	1	1	1	1	152611512	5	0
LINE-L1__HAL1-2a_MD	chr7	152611964	152612133	5	5	1	1	1	1	152612048	5	0
LINE-L1__HAL1-2a_MD	chr7	153961689	153961856	5	5	1	1	1	1	153961772	5	0
LINE-L1__HAL1-2a_MD	chr7	153961857	153961985	5	5	1	1	1	1	153961921	5	0
LINE-L1__HAL1-2a_MD	chr7	153962013	153962180	5	5	1	1	1	1	153962096	5	0
LINE-L1__HAL1-2a_MD	chr7	153962193	153962360	5	5	1	1	1	1	153962276	5	0
LINE-L1__HAL1-2a_MD	chr7	154570253	154570426	5	5	1	1	1	1	154570339	5	0
LINE-L1__HAL1-2a_MD	chr7	154570699	154570892	5	5	1	1	1	1	154570795	5	0
LINE-L1__HAL1-2a_MD	chr7	155109726	155109885	5	5	1	1	1	1	155109805	5	0
LINE-L1__HAL1-2a_MD	chr7	155109973	155110146	5	5	1	1	1	1	155110059	5	0
LINE-L1__HAL1-2a_MD	chr7	155110159	155110338	5	5	1	1	1	1	155110248	5	0
LINE-L1__HAL1-2a_MD	chr7	155204558	155204717	5	5	1	1	1	1	155204637	5	0
LINE-L1__HAL1-2a_MD	chr7	155684119	155684302	5	5	1	1	1	1	155684210	5	0
LINE-L1__HAL1-2a_MD	chr7	155726629	155726705	5	5	1	1	1	1	155726667	5	0
LINE-L1__HAL1-2a_MD	chr7	155726887	155726947	5	5	1	1	1	1	155726917	5	0
LINE-L1__HAL1-2a_MD	chr7	156241575	156241750	5	5	1	1	1	1	156241662	5	0
LINE-L1__HAL1-2a_MD	chr7	156241751	156241922	5	5	1	1	1	1	156241836	5	0
LINE-L1__HAL1-2a_MD	chr7	157759432	157759620	5	5	1	1	1	1	157759526	5	0
LINE-L1__HAL1-2a_MD	chr7	157841192	157841366	5	5	1	1	1	1	157841279	5	0
LINE-L1__HAL1-2a_MD	chr7	157841464	157841641	5	5	1	1	1	1	157841552	5	0
LINE-L1__HAL1-2a_MD	chr7	157841695	157841861	5	5	1	1	1	1	157841778	5	0
LINE-L1__HAL1-2a_MD	chr7	157841867	157841930	5	5	1	1	1	1	157841898	5	0
LINE-L1__HAL1-2a_MD	chr7	157948133	157948324	5	5	1	1	1	1	157948228	5	0
LINE-L1__HAL1-2a_MD	chr7	157948355	157948516	5	5	1	1	1	1	157948435	5	0
LINE-L1__HAL1-2a_MD	chr7	157965065	157965251	5	5	1	1	1	1	157965158	5	0
LINE-L1__HAL1-2a_MD	chr7	157965360	157965526	5	5	1	1	1	1	157965443	5	0
LINE-L1__HAL1-2a_MD	chr7	157965533	157965715	5	5	1	1	1	1	157965624	5	0
LINE-L1__HAL1-2a_MD	chr7	157965731	157965925	5	5	1	1	1	1	157965828	5	0
LINE-L1__HAL1-2a_MD	chr7	157966988	157967180	5	5	1	1	1	1	157967084	5	0
LINE-L1__HAL1-2a_MD	chr7	158233382	158233551	5	5	1	1	1	1	158233466	5	0
LINE-L1__HAL1-2a_MD	chr7	158233560	158233720	5	5	1	1	1	1	158233640	5	0
LINE-L1__HAL1-2a_MD	chr7	158234292	158234460	5	5	1	1	1	1	158234376	5	0
LINE-L1__HAL1-2a_MD	chr7	158255967	158256140	5	5	1	1	1	1	158256053	5	0
LINE-L1__HAL1-2a_MD	chr7	158256217	158256403	5	5	1	1	1	1	158256310	5	0
LINE-L1__HAL1-2a_MD	chr7	158256824	158256987	5	5	1	1	1	1	158256905	5	0
LINE-L1__HAL1-2a_MD	chr7	158257393	158257577	5	5	1	1	1	1	158257485	5	0
LINE-L1__HAL1-2a_MD	chr7	158386694	158386828	5	5	1	1	1	1	158386761	5	0
LINE-L1__HAL1-2a_MD	chr7	158386984	158387293	5	5	1	1	1	1	158387138	5	0
LINE-L1__HAL1-2a_MD	chr7	158387803	158388001	5	5	1	1	1	1	158387902	5	0
LINE-L1__HAL1-2a_MD	chrX	417712	417874	5	5	1	1	1	1	417793	5	0
LINE-L1__HAL1-2a_MD	chrX	417845	418177	5	5	1	1	1	1	418011	5	0
LINE-L1__HAL1-2a_MD	chrX	418152	418558	5	5	1	1	1	1	418355	5	0
LINE-L1__HAL1-2a_MD	chrX	2023337	2023411	5	5	1	1	1	1	2023374	5	0
LINE-L1__HAL1-2a_MD	chrX	2023679	2023884	5	5	1	1	1	1	2023781	5	0
LINE-L1__HAL1-2a_MD	chrX	2023885	2023978	5	5	1	1	1	1	2023931	5	0
LINE-L1__HAL1-2a_MD	chrX	2300470	2300572	5	5	1	1	1	1	2300521	5	0
LINE-L1__HAL1-2a_MD	chrX	2300942	2300980	5	5	1	1	1	1	2300961	5	0
LINE-L1__HAL1-2a_MD	chrX	2300982	2301148	5	5	1	1	1	1	2301065	5	0
LINE-L1__HAL1-2a_MD	chrX	2301310	2301509	5	5	1	1	1	1	2301409	5	0
LINE-L1__HAL1-2a_MD	chrX	2437706	2437754	5	5	1	1	1	1	2437730	5	0
LINE-L1__HAL1-2a_MD	chrX	2437935	2438052	5	5	1	1	1	1	2437993	5	0
LINE-L1__HAL1-2a_MD	chrX	2438659	2438829	5	5	1	1	1	1	2438744	5	0
LINE-L1__HAL1-2a_MD	chrX	3344644	3344719	5	5	1	1	1	1	3344681	5	0
LINE-L1__HAL1-2a_MD	chrX	3344900	3345009	5	5	1	1	1	1	3344954	5	0
LINE-L1__HAL1-2a_MD	chrX	3345011	3345137	5	5	1	1	1	1	3345074	5	0
LINE-L1__HAL1-2a_MD	chrX	3442453	3442632	5	5	1	1	1	1	3442542	5	0
LINE-L1__HAL1-2a_MD	chrX	3442633	3442645	5	5	1	1	1	1	3442639	5	0
LINE-L1__HAL1-2a_MD	chrX	3442826	3442992	5	5	1	1	1	1	3442909	5	0
LINE-L1__HAL1-2a_MD	chrX	3587683	3587857	5	5	1	1	1	1	3587770	5	0
LINE-L1__HAL1-2a_MD	chrX	4111536	4111682	5	5	1	1	1	1	4111609	5	0
LINE-L1__HAL1-2a_MD	chrX	4111683	4111856	5	5	1	1	1	1	4111769	5	0
LINE-L1__HAL1-2a_MD	chrX	4653307	4653482	5	5	1	1	1	1	4653394	5	0
LINE-L1__HAL1-2a_MD	chrX	4653513	4653676	5	5	1	1	1	1	4653594	5	0
LINE-L1__HAL1-2a_MD	chrX	4950110	4950259	5	5	1	1	1	1	4950184	5	0
LINE-L1__HAL1-2a_MD	chrX	5040173	5040274	5	5	1	1	1	1	5040223	5	0
LINE-L1__HAL1-2a_MD	chrX	5040275	5040472	5	5	1	1	1	1	5040373	5	0
LINE-L1__HAL1-2a_MD	chrX	5040477	5040647	5	5	1	1	1	1	5040562	5	0
LINE-L1__HAL1-2a_MD	chrX	6051126	6051283	5	5	1	1	1	1	6051204	5	0
LINE-L1__HAL1-2a_MD	chrX	6391073	6391245	5	5	1	1	1	1	6391159	5	0
LINE-L1__HAL1-2a_MD	chrX	6785533	6785704	5	5	1	1	1	1	6785618	5	0
LINE-L1__HAL1-2a_MD	chrX	7202958	7203144	5	5	1	1	1	1	7203051	5	0
LINE-L1__HAL1-2a_MD	chrX	15652551	15652670	5	5	1	1	1	1	15652610	5	0
LINE-L1__HAL1-2a_MD	chrX	17280992	17281238	5	5	1	1	1	1	17281115	5	0
LINE-L1__HAL1-2a_MD	chrX	17830164	17830314	5	5	1	1	1	1	17830239	5	0
LINE-L1__HAL1-2a_MD	chrX	47990403	47990549	5	5	1	1	1	1	47990476	5	0
LINE-L1__HAL1-2a_MD	chrX	68157231	68157399	5	5	1	1	1	1	68157315	5	0
LINE-L1__HAL1-2a_MD	chrX	106846409	106846497	5	5	1	1	1	1	106846453	5	0
LINE-L1__HAL1-2a_MD	chr8	874930	875092	5	5	1	1	1	1	875011	5	0
LINE-L1__HAL1-2a_MD	chr8	1124151	1124418	5	5	1	1	1	1	1124284	5	0
LINE-L1__HAL1-2a_MD	chr8	1124441	1124613	5	5	1	1	1	1	1124527	5	0
LINE-L1__HAL1-2a_MD	chr8	1124634	1124813	5	5	1	1	1	1	1124723	5	0
LINE-L1__HAL1-2a_MD	chr8	1285526	1285707	5	5	1	1	1	1	1285616	5	0
LINE-L1__HAL1-2a_MD	chr8	3647843	3648019	5	5	1	1	1	1	3647931	5	0
LINE-L1__HAL1-2a_MD	chr8	10041325	10041483	5	5	1	1	1	1	10041404	5	0
LINE-L1__HAL1-2a_MD	chr8	10041516	10041744	5	5	1	1	1	1	10041630	5	0
LINE-L1__HAL1-2a_MD	chr8	10860747	10860948	5	5	1	1	1	1	10860847	5	0
LINE-L1__HAL1-2a_MD	chr8	10890517	10890701	5	5	1	1	1	1	10890609	5	0
LINE-L1__HAL1-2a_MD	chr8	11483615	11483779	5	5	1	1	1	1	11483697	5	0
LINE-L1__HAL1-2a_MD	chr8	33456634	33456727	5	5	1	1	1	1	33456680	5	0
LINE-L1__HAL1-2a_MD	chr8	41757929	41757983	5	5	1	1	1	1	41757956	5	0
LINE-L1__HAL1-2a_MD	chr8	41758167	41758248	5	5	1	1	1	1	41758207	5	0
LINE-L1__HAL1-2a_MD	chr8	98065253	98065333	5	5	1	1	1	1	98065293	5	0
LINE-L1__HAL1-2a_MD	chr8	101438663	101438777	5	5	1	1	1	1	101438720	5	0
LINE-L1__HAL1-2a_MD	chr8	101438958	101439001	5	5	1	1	1	1	101438979	5	0
LINE-L1__HAL1-2a_MD	chr8	117950755	117950987	5	5	1	1	1	1	117950871	5	0
LINE-L1__HAL1-2a_MD	chr8	121232977	121233138	5	5	1	1	1	1	121233057	5	0
LINE-L1__HAL1-2a_MD	chr8	123715401	123715544	5	5	1	1	1	1	123715472	5	0
LINE-L1__HAL1-2a_MD	chr8	123715546	123715625	5	5	1	1	1	1	123715585	5	0
LINE-L1__HAL1-2a_MD	chr8	129323281	129323487	5	5	1	1	1	1	129323384	5	0
LINE-L1__HAL1-2a_MD	chr8	129385635	129385792	5	5	1	1	1	1	129385713	5	0
LINE-L1__HAL1-2a_MD	chr8	129385828	129386002	5	5	1	1	1	1	129385915	5	0
LINE-L1__HAL1-2a_MD	chr8	131440640	131440838	5	5	1	1	1	1	131440739	5	0
LINE-L1__HAL1-2a_MD	chr8	131441020	131441072	5	5	1	1	1	1	131441046	5	0
LINE-L1__HAL1-2a_MD	chr8	131441544	131441568	5	5	1	1	1	1	131441556	5	0
LINE-L1__HAL1-2a_MD	chr8	135602938	135603118	5	5	1	1	1	1	135603028	5	0
LINE-L1__HAL1-2a_MD	chr8	137225353	137225561	5	5	1	1	1	1	137225457	5	0
LINE-L1__HAL1-2a_MD	chr8	137225571	137225815	5	5	1	1	1	1	137225693	5	0
LINE-L1__HAL1-2a_MD	chr8	137225795	137225913	5	5	1	1	1	1	137225854	5	0
LINE-L1__HAL1-2a_MD	chr8	139650066	139650229	5	5	1	1	1	1	139650147	5	0
LINE-L1__HAL1-2a_MD	chr8	139650234	139650339	5	5	1	1	1	1	139650286	5	0
LINE-L1__HAL1-2a_MD	chr8	139754807	139755004	5	5	1	1	1	1	139754905	5	0
LINE-L1__HAL1-2a_MD	chr8	139755089	139755261	5	5	1	1	1	1	139755175	5	0
LINE-L1__HAL1-2a_MD	chr8	139755263	139755460	5	5	1	1	1	1	139755361	5	0
LINE-L1__HAL1-2a_MD	chr8	139755509	139755788	5	5	1	1	1	1	139755648	5	0
LINE-L1__HAL1-2a_MD	chr8	139818108	139818198	5	5	1	1	1	1	139818153	5	0
LINE-L1__HAL1-2a_MD	chr8	139818250	139818340	5	5	1	1	1	1	139818295	5	0
LINE-L1__HAL1-2a_MD	chr8	139867003	139867172	5	5	1	1	1	1	139867087	5	0
LINE-L1__HAL1-2a_MD	chr8	140030460	140030659	5	5	1	1	1	1	140030559	5	0
LINE-L1__HAL1-2a_MD	chr8	141282224	141282393	5	5	1	1	1	1	141282308	5	0
LINE-L1__HAL1-2a_MD	chr8	141282456	141282606	5	5	1	1	1	1	141282531	5	0
LINE-L1__HAL1-2a_MD	chr8	142479344	142479517	5	5	1	1	1	1	142479430	5	0
LINE-L1__HAL1-2a_MD	chr8	142479522	142479649	5	5	1	1	1	1	142479585	5	0
LINE-L1__HAL1-2a_MD	chr8	142565168	142565353	5	5	1	1	1	1	142565260	5	0
LINE-L1__HAL1-2a_MD	chr8	142668400	142668553	5	5	1	1	1	1	142668476	5	0
LINE-L1__HAL1-2a_MD	chr8	142723751	142723768	5	5	1	1	1	1	142723759	5	0
LINE-L1__HAL1-2a_MD	chr8	142723949	142724090	5	5	1	1	1	1	142724019	5	0
LINE-L1__HAL1-2a_MD	chr8	142837362	142837538	5	5	1	1	1	1	142837450	5	0
LINE-L1__HAL1-2a_MD	chr8	142860383	142860667	5	5	1	1	1	1	142860525	5	0
LINE-L1__HAL1-2a_MD	chr8	142860891	142861042	5	5	1	1	1	1	142860966	5	0
LINE-L1__HAL1-2a_MD	chr8	142889852	142890016	5	5	1	1	1	1	142889934	5	0
LINE-L1__HAL1-2a_MD	chr8	142890014	142890167	5	5	1	1	1	1	142890090	5	0
LINE-L1__HAL1-2a_MD	chr8	142921004	142921213	5	5	1	1	1	1	142921108	5	0
LINE-L1__HAL1-2a_MD	chr8	142939240	142939417	5	5	1	1	1	1	142939328	5	0
LINE-L1__HAL1-2a_MD	chr8	142939810	142939986	5	5	1	1	1	1	142939898	5	0
LINE-L1__HAL1-2a_MD	chr8	143093942	143094107	5	5	1	1	1	1	143094024	5	0
LINE-L1__HAL1-2a_MD	chr8	143094137	143094322	5	5	1	1	1	1	143094229	5	0
LINE-L1__HAL1-2a_MD	chr8	143094354	143094530	5	5	1	1	1	1	143094442	5	0
LINE-L1__HAL1-2a_MD	chr8	143267093	143267278	5	5	1	1	1	1	143267185	5	0
LINE-L1__HAL1-2a_MD	chr8	143336629	143336750	5	5	1	1	1	1	143336689	5	0
LINE-L1__HAL1-2a_MD	chr8	143337141	143337195	5	5	1	1	1	1	143337168	5	0
LINE-L1__HAL1-2a_MD	chr8	143513568	143513749	5	5	1	1	1	1	143513658	5	0
LINE-L1__HAL1-2a_MD	chr8	143582853	143583057	5	5	1	1	1	1	143582955	5	0
LINE-L1__HAL1-2a_MD	chr8	143583072	143583231	5	5	1	1	1	1	143583151	5	0
LINE-L1__HAL1-2a_MD	chr8	143583245	143583427	5	5	1	1	1	1	143583336	5	0
LINE-L1__HAL1-2a_MD	chr8	143583701	143583878	5	5	1	1	1	1	143583789	5	0
LINE-L1__HAL1-2a_MD	chr8	143584111	143584420	5	5	1	1	1	1	143584265	5	0
LINE-L1__HAL1-2a_MD	chr8	143600930	143601097	5	5	1	1	1	1	143601013	5	0
LINE-L1__HAL1-2a_MD	chr8	143601572	143601766	5	5	1	1	1	1	143601669	5	0
LINE-L1__HAL1-2a_MD	chr8	143601833	143602013	5	5	1	1	1	1	143601923	5	0
LINE-L1__HAL1-2a_MD	chr8	143629311	143629485	5	5	1	1	1	1	143629398	5	0
LINE-L1__HAL1-2a_MD	chr8	143706915	143707121	5	5	1	1	1	1	143707018	5	0
LINE-L1__HAL1-2a_MD	chr8	143710682	143710859	5	5	1	1	1	1	143710770	5	0
LINE-L1__HAL1-2a_MD	chr8	143711074	143711240	5	5	1	1	1	1	143711157	5	0
LINE-L1__HAL1-2a_MD	chr8	143711242	143711418	5	5	1	1	1	1	143711330	5	0
LINE-L1__HAL1-2a_MD	chr8	143711437	143711599	5	5	1	1	1	1	143711518	5	0
LINE-L1__HAL1-2a_MD	chr8	144031360	144031515	5	5	1	1	1	1	144031437	5	0
LINE-L1__HAL1-2a_MD	chr8	144300365	144300556	5	5	1	1	1	1	144300460	5	0
LINE-L1__HAL1-2a_MD	chr8	144492421	144492645	5	5	1	1	1	1	144492533	5	0
LINE-L1__HAL1-2a_MD	chr8	145055410	145055601	5	5	1	1	1	1	145055505	5	0
LINE-L1__HAL1-2a_MD	chr8	145055682	145055878	5	5	1	1	1	1	145055780	5	0
LINE-L1__HAL1-2a_MD	chr8	145056054	145056232	5	5	1	1	1	1	145056143	5	0
LINE-L1__HAL1-2a_MD	chr9	38129183	38129323	5	5	1	1	1	1	38129253	5	0
LINE-L1__HAL1-2a_MD	chr9	38130573	38130660	5	5	1	1	1	1	38130616	5	0
LINE-L1__HAL1-2a_MD	chr9	91654594	91654762	5	5	1	1	1	1	91654678	5	0
LINE-L1__HAL1-2a_MD	chr9	91654771	91654957	5	5	1	1	1	1	91654864	5	0
LINE-L1__HAL1-2a_MD	chr9	96386534	96386699	5	5	1	1	1	1	96386616	5	0
LINE-L1__HAL1-2a_MD	chr9	96386898	96387072	5	5	1	1	1	1	96386985	5	0
LINE-L1__HAL1-2a_MD	chr9	96387085	96387207	5	5	1	1	1	1	96387146	5	0
LINE-L1__HAL1-2a_MD	chr9	98468000	98468043	5	5	1	1	1	1	98468021	5	0
LINE-L1__HAL1-2a_MD	chr9	98468224	98468344	5	5	1	1	1	1	98468284	5	0
LINE-L1__HAL1-2a_MD	chr9	98850879	98851056	5	5	1	1	1	1	98850967	5	0
LINE-L1__HAL1-2a_MD	chr9	116869911	116870106	5	5	1	1	1	1	116870008	5	0
LINE-L1__HAL1-2a_MD	chr9	117040471	117040662	5	5	1	1	1	1	117040566	5	0
LINE-L1__HAL1-2a_MD	chr9	117040663	117040824	5	5	1	1	1	1	117040743	5	0
LINE-L1__HAL1-2a_MD	chr9	117131885	117132079	5	5	1	1	1	1	117131982	5	0
LINE-L1__HAL1-2a_MD	chr9	118398029	118398180	5	5	1	1	1	1	118398104	5	0
LINE-L1__HAL1-2a_MD	chr9	119136310	119136480	5	5	1	1	1	1	119136395	5	0
LINE-L1__HAL1-2a_MD	chr9	122898496	122898645	5	5	1	1	1	1	122898570	5	0
LINE-L1__HAL1-2a_MD	chr9	128747674	128747812	5	5	1	1	1	1	128747743	5	0
LINE-L1__HAL1-2a_MD	chr9	132172752	132172931	5	5	1	1	1	1	132172841	5	0
LINE-L1__HAL1-2a_MD	chr9	133830313	133830479	5	5	1	1	1	1	133830396	5	0
LINE-L1__HAL1-2a_MD	chr9	133830673	133830871	5	5	1	1	1	1	133830772	5	0
LINE-L1__HAL1-2a_MD	chr9	133833956	133834001	5	5	1	1	1	1	133833978	5	0
LINE-L1__HAL1-2a_MD	chr9	133834182	133834258	5	5	1	1	1	1	133834220	5	0
LINE-L1__HAL1-2a_MD	chr9	134839665	134839816	5	5	1	1	1	1	134839740	5	0
LINE-L1__HAL1-2a_MD	chr9	135315370	135315469	5	5	1	1	1	1	135315419	5	0
LINE-L1__HAL1-2a_MD	chr9	136249343	136249522	5	5	1	1	1	1	136249432	5	0
LINE-L1__HAL1-2a_MD	chr9	137197381	137197548	5	5	1	1	1	1	137197464	5	0
LINE-L1__HAL1-2a_MD	chr9	137197549	137197722	5	5	1	1	1	1	137197635	5	0
LINE-L1__HAL1-2a_MD	chr9	137197726	137197813	5	5	1	1	1	1	137197769	5	0
LINE-L1__HAL1-2a_MD	chr9	137197815	137197993	5	5	1	1	1	1	137197904	5	0
LINE-L1__HAL1-2a_MD	chr9	137198045	137198206	5	5	1	1	1	1	137198125	5	0
LINE-L1__HAL1-2a_MD	chr9	137285938	137286113	5	5	1	1	1	1	137286025	5	0
LINE-L1__HAL1-2a_MD	chr9	137606501	137606712	5	5	1	1	1	1	137606606	5	0
LINE-L1__HAL1-2a_MD	chr9	137607751	137607919	5	5	1	1	1	1	137607835	5	0
LINE-L1__HAL1-2a_MD	chr9	138225382	138225550	5	5	1	1	1	1	138225466	5	0
LINE-L1__HAL1-2a_MD	chr9	140674527	140674718	5	5	1	1	1	1	140674622	5	0
LINE-L1__HAL1-2a_MD	chr9	140674720	140674887	5	5	1	1	1	1	140674803	5	0
LINE-L1__HAL1-2a_MD	chr9	140674910	140675085	5	5	1	1	1	1	140674997	5	0
LINE-L1__HAL1-2a_MD	chr9	140675767	140675917	5	5	1	1	1	1	140675842	5	0
LINE-L1__HAL1-2a_MD	chr9	140757993	140758248	5	5	1	1	1	1	140758120	5	0
LINE-L1__HAL1-2a_MD	chr10	1265721	1265880	5	5	1	1	1	1	1265800	5	0
LINE-L1__HAL1-2a_MD	chr10	1266071	1266143	5	5	1	1	1	1	1266107	5	0
LINE-L1__HAL1-2a_MD	chr10	1266328	1266399	5	5	1	1	1	1	1266363	5	0
LINE-L1__HAL1-2a_MD	chr10	1538240	1538426	5	5	1	1	1	1	1538333	5	0
LINE-L1__HAL1-2a_MD	chr10	1538428	1538590	5	5	1	1	1	1	1538509	5	0
LINE-L1__HAL1-2a_MD	chr10	1538855	1539025	5	5	1	1	1	1	1538940	5	0
LINE-L1__HAL1-2a_MD	chr10	2079411	2079597	5	5	1	1	1	1	2079504	5	0
LINE-L1__HAL1-2a_MD	chr10	2079615	2079799	5	5	1	1	1	1	2079707	5	0
LINE-L1__HAL1-2a_MD	chr10	2253466	2253657	5	5	1	1	1	1	2253561	5	0
LINE-L1__HAL1-2a_MD	chr10	3263791	3263975	5	5	1	1	1	1	3263883	5	0
LINE-L1__HAL1-2a_MD	chr10	3263984	3264139	5	5	1	1	1	1	3264061	5	0
LINE-L1__HAL1-2a_MD	chr10	3266439	3266615	5	5	1	1	1	1	3266527	5	0
LINE-L1__HAL1-2a_MD	chr10	3266714	3266748	5	5	1	1	1	1	3266731	5	0
LINE-L1__HAL1-2a_MD	chr10	3267131	3267261	5	5	1	1	1	1	3267196	5	0
LINE-L1__HAL1-2a_MD	chr10	3267295	3267479	5	5	1	1	1	1	3267387	5	0
LINE-L1__HAL1-2a_MD	chr10	10308172	10308445	5	5	1	1	1	1	10308308	5	0
LINE-L1__HAL1-2a_MD	chr10	10308465	10308699	5	5	1	1	1	1	10308582	5	0
LINE-L1__HAL1-2a_MD	chr10	10308787	10309006	5	5	1	1	1	1	10308896	5	0
LINE-L1__HAL1-2a_MD	chr10	10309012	10309171	5	5	1	1	1	1	10309091	5	0
LINE-L1__HAL1-2a_MD	chr10	12455475	12455619	5	5	1	1	1	1	12455547	5	0
LINE-L1__HAL1-2a_MD	chr10	15191219	15191381	5	5	1	1	1	1	15191300	5	0
LINE-L1__HAL1-2a_MD	chr10	15271562	15271768	5	5	1	1	1	1	15271665	5	0
LINE-L1__HAL1-2a_MD	chr10	35956027	35956137	5	5	1	1	1	1	35956082	5	0
LINE-L1__HAL1-2a_MD	chr10	43583679	43583869	5	5	1	1	1	1	43583774	5	0
LINE-L1__HAL1-2a_MD	chr10	50017216	50017392	5	5	1	1	1	1	50017304	5	0
LINE-L1__HAL1-2a_MD	chr10	50017501	50017686	5	5	1	1	1	1	50017593	5	0
LINE-L1__HAL1-2a_MD	chr10	50241952	50242122	5	5	1	1	1	1	50242037	5	0
LINE-L1__HAL1-2a_MD	chr10	50242144	50242308	5	5	1	1	1	1	50242226	5	0
LINE-L1__HAL1-2a_MD	chr10	71434565	71434716	5	5	1	1	1	1	71434640	5	0
LINE-L1__HAL1-2a_MD	chr10	71551613	71551782	5	5	1	1	1	1	71551697	5	0
LINE-L1__HAL1-2a_MD	chr10	72792638	72792771	5	5	1	1	1	1	72792704	5	0
LINE-L1__HAL1-2a_MD	chr10	72792772	72792942	5	5	1	1	1	1	72792857	5	0
LINE-L1__HAL1-2a_MD	chr10	79989772	79990053	5	5	1	1	1	1	79989912	5	0
LINE-L1__HAL1-2a_MD	chr10	80661127	80661320	5	5	1	1	1	1	80661223	5	0
LINE-L1__HAL1-2a_MD	chr10	80661356	80661518	5	5	1	1	1	1	80661437	5	0
LINE-L1__HAL1-2a_MD	chr10	80661522	80661702	5	5	1	1	1	1	80661612	5	0
LINE-L1__HAL1-2a_MD	chr10	80661720	80661918	5	5	1	1	1	1	80661819	5	0
LINE-L1__HAL1-2a_MD	chr10	83668634	83668699	5	5	1	1	1	1	83668666	5	0
LINE-L1__HAL1-2a_MD	chr10	83669155	83669244	5	5	1	1	1	1	83669199	5	0
LINE-L1__HAL1-2a_MD	chr10	84220759	84220935	5	5	1	1	1	1	84220847	5	0
LINE-L1__HAL1-2a_MD	chr10	87877009	87877174	5	5	1	1	1	1	87877091	5	0
LINE-L1__HAL1-2a_MD	chr10	87881039	87881142	5	5	1	1	1	1	87881090	5	0
LINE-L1__HAL1-2a_MD	chr10	87881147	87881343	5	5	1	1	1	1	87881245	5	0
LINE-L1__HAL1-2a_MD	chr10	87919692	87919855	5	5	1	1	1	1	87919773	5	0
LINE-L1__HAL1-2a_MD	chr10	89806264	89806353	5	5	1	1	1	1	89806308	5	0
LINE-L1__HAL1-2a_MD	chr10	99804229	99804406	5	5	1	1	1	1	99804317	5	0
LINE-L1__HAL1-2a_MD	chr10	115390060	115390241	5	5	1	1	1	1	115390150	5	0
LINE-L1__HAL1-2a_MD	chr10	116255310	116255428	5	5	1	1	1	1	116255369	5	0
LINE-L1__HAL1-2a_MD	chr10	121072425	121072539	5	5	1	1	1	1	121072482	5	0
LINE-L1__HAL1-2a_MD	chr10	121186152	121186259	5	5	1	1	1	1	121186205	5	0
LINE-L1__HAL1-2a_MD	chr10	121186260	121186429	5	5	1	1	1	1	121186344	5	0
LINE-L1__HAL1-2a_MD	chr10	121186483	121186653	5	5	1	1	1	1	121186568	5	0
LINE-L1__HAL1-2a_MD	chr10	121186717	121186881	5	5	1	1	1	1	121186799	5	0
LINE-L1__HAL1-2a_MD	chr10	121186954	121187115	5	5	1	1	1	1	121187034	5	0
LINE-L1__HAL1-2a_MD	chr10	121187116	121187216	5	5	1	1	1	1	121187166	5	0
LINE-L1__HAL1-2a_MD	chr10	121187217	121187389	5	5	1	1	1	1	121187303	5	0
LINE-L1__HAL1-2a_MD	chr10	121187408	121187516	5	5	1	1	1	1	121187462	5	0
LINE-L1__HAL1-2a_MD	chr10	125013854	125014021	5	5	1	1	1	1	125013937	5	0
LINE-L1__HAL1-2a_MD	chr10	125014552	125014720	5	5	1	1	1	1	125014636	5	0
LINE-L1__HAL1-2a_MD	chr10	125014773	125014940	5	5	1	1	1	1	125014856	5	0
LINE-L1__HAL1-2a_MD	chr10	125015022	125015196	5	5	1	1	1	1	125015109	5	0
LINE-L1__HAL1-2a_MD	chr10	125140123	125140286	5	5	1	1	1	1	125140204	5	0
LINE-L1__HAL1-2a_MD	chr10	125283450	125283595	5	5	1	1	1	1	125283522	5	0
LINE-L1__HAL1-2a_MD	chr10	125370836	125370991	5	5	1	1	1	1	125370913	5	0
LINE-L1__HAL1-2a_MD	chr10	125695231	125695426	5	5	1	1	1	1	125695328	5	0
LINE-L1__HAL1-2a_MD	chr10	125994751	125994947	5	5	1	1	1	1	125994849	5	0
LINE-L1__HAL1-2a_MD	chr10	127915605	127915758	5	5	1	1	1	1	127915681	5	0
LINE-L1__HAL1-2a_MD	chr10	127915725	127915894	5	5	1	1	1	1	127915809	5	0
LINE-L1__HAL1-2a_MD	chr10	132923339	132923497	5	5	1	1	1	1	132923418	5	0
LINE-L1__HAL1-2a_MD	chr10	134241163	134241343	5	5	1	1	1	1	134241253	5	0
LINE-L1__HAL1-2a_MD	chr10	134241383	134241557	5	5	1	1	1	1	134241470	5	0
LINE-L1__HAL1-2a_MD	chr10	134241634	134241785	5	5	1	1	1	1	134241709	5	0
LINE-L1__HAL1-2a_MD	chr10	134241785	134241946	5	5	1	1	1	1	134241865	5	0
LINE-L1__HAL1-2a_MD	chr11	2450425	2450596	5	5	1	1	1	1	2450510	5	0
LINE-L1__HAL1-2a_MD	chr11	2450623	2450802	5	5	1	1	1	1	2450712	5	0
LINE-L1__HAL1-2a_MD	chr11	2450810	2450986	5	5	1	1	1	1	2450898	5	0
LINE-L1__HAL1-2a_MD	chr11	2451735	2451923	5	5	1	1	1	1	2451829	5	0
LINE-L1__HAL1-2a_MD	chr11	3195488	3195675	5	5	1	1	1	1	3195581	5	0
LINE-L1__HAL1-2a_MD	chr11	3195855	3196021	5	5	1	1	1	1	3195938	5	0
LINE-L1__HAL1-2a_MD	chr11	3227784	3227912	5	5	1	1	1	1	3227848	5	0
LINE-L1__HAL1-2a_MD	chr11	35155256	35155393	5	5	1	1	1	1	35155324	5	0
LINE-L1__HAL1-2a_MD	chr11	42969058	42969210	5	5	1	1	1	1	42969134	5	0
LINE-L1__HAL1-2a_MD	chr11	44563821	44564000	5	5	1	1	1	1	44563910	5	0
LINE-L1__HAL1-2a_MD	chr11	44564123	44564300	5	5	1	1	1	1	44564211	5	0
LINE-L1__HAL1-2a_MD	chr11	44573342	44573500	5	5	1	1	1	1	44573421	5	0
LINE-L1__HAL1-2a_MD	chr11	44573514	44573659	5	5	1	1	1	1	44573586	5	0
LINE-L1__HAL1-2a_MD	chr11	60855041	60855202	5	5	1	1	1	1	60855121	5	0
LINE-L1__HAL1-2a_MD	chr11	60866888	60867044	5	5	1	1	1	1	60866966	5	0
LINE-L1__HAL1-2a_MD	chr11	60867057	60867193	5	5	1	1	1	1	60867125	5	0
LINE-L1__HAL1-2a_MD	chr11	60867336	60867490	5	5	1	1	1	1	60867413	5	0
LINE-L1__HAL1-2a_MD	chr11	60867721	60867872	5	5	1	1	1	1	60867796	5	0
LINE-L1__HAL1-2a_MD	chr11	60868127	60868265	5	5	1	1	1	1	60868196	5	0
LINE-L1__HAL1-2a_MD	chr11	60868332	60868486	5	5	1	1	1	1	60868409	5	0
LINE-L1__HAL1-2a_MD	chr11	60868671	60868854	5	5	1	1	1	1	60868762	5	0
LINE-L1__HAL1-2a_MD	chr11	64320566	64320733	5	5	1	1	1	1	64320649	5	0
LINE-L1__HAL1-2a_MD	chr11	64331971	64332122	5	5	1	1	1	1	64332046	5	0
LINE-L1__HAL1-2a_MD	chr11	64332145	64332294	5	5	1	1	1	1	64332219	5	0
LINE-L1__HAL1-2a_MD	chr11	68956740	68956860	5	5	1	1	1	1	68956800	5	0
LINE-L1__HAL1-2a_MD	chr11	68962030	68962217	5	5	1	1	1	1	68962123	5	0
LINE-L1__HAL1-2a_MD	chr11	68962237	68962402	5	5	1	1	1	1	68962319	5	0
LINE-L1__HAL1-2a_MD	chr11	68962494	68962660	5	5	1	1	1	1	68962577	5	0
LINE-L1__HAL1-2a_MD	chr11	69059128	69059301	5	5	1	1	1	1	69059214	5	0
LINE-L1__HAL1-2a_MD	chr11	69139802	69139962	5	5	1	1	1	1	69139882	5	0
LINE-L1__HAL1-2a_MD	chr11	69656006	69656141	5	5	1	1	1	1	69656073	5	0
LINE-L1__HAL1-2a_MD	chr11	69656142	69656297	5	5	1	1	1	1	69656219	5	0
LINE-L1__HAL1-2a_MD	chr11	69656447	69656606	5	5	1	1	1	1	69656526	5	0
LINE-L1__HAL1-2a_MD	chr11	69658528	69658715	5	5	1	1	1	1	69658621	5	0
LINE-L1__HAL1-2a_MD	chr11	69658851	69659038	5	5	1	1	1	1	69658944	5	0
LINE-L1__HAL1-2a_MD	chr11	69659111	69659284	5	5	1	1	1	1	69659197	5	0
LINE-L1__HAL1-2a_MD	chr11	69659430	69659599	5	5	1	1	1	1	69659514	5	0
LINE-L1__HAL1-2a_MD	chr11	69872037	69872202	5	5	1	1	1	1	69872119	5	0
LINE-L1__HAL1-2a_MD	chr11	69872204	69872374	5	5	1	1	1	1	69872289	5	0
LINE-L1__HAL1-2a_MD	chr11	69872495	69872673	5	5	1	1	1	1	69872584	5	0
LINE-L1__HAL1-2a_MD	chr11	70548058	70548249	5	5	1	1	1	1	70548153	5	0
LINE-L1__HAL1-2a_MD	chr11	70548250	70548414	5	5	1	1	1	1	70548332	5	0
LINE-L1__HAL1-2a_MD	chr11	70548415	70548585	5	5	1	1	1	1	70548500	5	0
LINE-L1__HAL1-2a_MD	chr11	70548586	70548764	5	5	1	1	1	1	70548675	5	0
LINE-L1__HAL1-2a_MD	chr11	70632998	70633171	5	5	1	1	1	1	70633084	5	0
LINE-L1__HAL1-2a_MD	chr11	70835095	70835262	5	5	1	1	1	1	70835178	5	0
LINE-L1__HAL1-2a_MD	chr11	70835272	70835452	5	5	1	1	1	1	70835362	5	0
LINE-L1__HAL1-2a_MD	chr11	71121401	71121562	5	5	1	1	1	1	71121481	5	0
LINE-L1__HAL1-2a_MD	chr11	71121566	71121716	5	5	1	1	1	1	71121641	5	0
LINE-L1__HAL1-2a_MD	chr11	71121759	71121964	5	5	1	1	1	1	71121861	5	0
LINE-L1__HAL1-2a_MD	chr11	74898520	74898697	5	5	1	1	1	1	74898608	5	0
LINE-L1__HAL1-2a_MD	chr11	76903824	76904020	5	5	1	1	1	1	76903922	5	0
LINE-L1__HAL1-2a_MD	chr11	76904222	76904466	5	5	1	1	1	1	76904344	5	0
LINE-L1__HAL1-2a_MD	chr11	76904473	76904643	5	5	1	1	1	1	76904558	5	0
LINE-L1__HAL1-2a_MD	chr11	80497165	80497322	5	5	1	1	1	1	80497243	5	0
LINE-L1__HAL1-2a_MD	chr11	92438680	92438837	5	5	1	1	1	1	92438758	5	0
LINE-L1__HAL1-2a_MD	chr11	95735630	95735815	5	5	1	1	1	1	95735722	5	0
LINE-L1__HAL1-2a_MD	chr11	95735885	95736068	5	5	1	1	1	1	95735976	5	0
LINE-L1__HAL1-2a_MD	chr11	95736083	95736281	5	5	1	1	1	1	95736182	5	0
LINE-L1__HAL1-2a_MD	chr11	95825180	95825200	5	5	1	1	1	1	95825190	5	0
LINE-L1__HAL1-2a_MD	chr11	95825239	95825421	5	5	1	1	1	1	95825330	5	0
LINE-L1__HAL1-2a_MD	chr11	110843172	110843237	5	5	1	1	1	1	110843204	5	0
LINE-L1__HAL1-2a_MD	chr11	111274492	111274583	5	5	1	1	1	1	111274537	5	0
LINE-L1__HAL1-2a_MD	chr11	131698269	131698426	5	5	1	1	1	1	131698347	5	0
LINE-L1__HAL1-2a_MD	chr11	132409689	132409872	5	5	1	1	1	1	132409780	5	0
LINE-L1__HAL1-2a_MD	chr11	133224093	133224260	5	5	1	1	1	1	133224176	5	0
LINE-L1__HAL1-2a_MD	chr11	133456742	133456910	5	5	1	1	1	1	133456826	5	0
LINE-L1__HAL1-2a_MD	chr11	133456941	133457117	5	5	1	1	1	1	133457029	5	0
LINE-L1__HAL1-2a_MD	chr11	133457349	133457506	5	5	1	1	1	1	133457427	5	0
LINE-L1__HAL1-2a_MD	chr11	134434767	134434935	5	5	1	1	1	1	134434851	5	0
LINE-L1__HAL1-2a_MD	chr12	2546900	2547067	5	5	1	1	1	1	2546983	5	0
LINE-L1__HAL1-2a_MD	chr12	2547080	2547254	5	5	1	1	1	1	2547167	5	0
LINE-L1__HAL1-2a_MD	chr12	5767542	5767716	5	5	1	1	1	1	5767629	5	0
LINE-L1__HAL1-2a_MD	chr12	5767746	5767919	5	5	1	1	1	1	5767832	5	0
LINE-L1__HAL1-2a_MD	chr12	5767923	5768091	5	5	1	1	1	1	5768007	5	0
LINE-L1__HAL1-2a_MD	chr12	5974533	5974816	5	5	1	1	1	1	5974674	5	0
LINE-L1__HAL1-2a_MD	chr12	5974795	5974992	5	5	1	1	1	1	5974893	5	0
LINE-L1__HAL1-2a_MD	chr12	16890407	16890483	5	5	1	1	1	1	16890445	5	0
LINE-L1__HAL1-2a_MD	chr12	34388956	34389123	5	5	1	1	1	1	34389039	5	0
LINE-L1__HAL1-2a_MD	chr12	34389129	34389310	5	5	1	1	1	1	34389219	5	0
LINE-L1__HAL1-2a_MD	chr12	38512798	38512928	5	5	1	1	1	1	38512863	5	0
LINE-L1__HAL1-2a_MD	chr12	83269741	83269934	5	5	1	1	1	1	83269837	5	0
LINE-L1__HAL1-2a_MD	chr12	96048421	96048597	5	5	1	1	1	1	96048509	5	0
LINE-L1__HAL1-2a_MD	chr12	96048813	96049233	5	5	1	1	1	1	96049023	5	0
LINE-L1__HAL1-2a_MD	chr12	100915889	100916025	5	5	1	1	1	1	100915957	5	0
LINE-L1__HAL1-2a_MD	chr12	103525533	103525765	5	5	1	1	1	1	103525649	5	0
LINE-L1__HAL1-2a_MD	chr12	104779354	104779526	5	5	1	1	1	1	104779440	5	0
LINE-L1__HAL1-2a_MD	chr12	106649394	106649549	5	5	1	1	1	1	106649471	5	0
LINE-L1__HAL1-2a_MD	chr12	107856308	107856491	5	5	1	1	1	1	107856399	5	0
LINE-L1__HAL1-2a_MD	chr12	107856493	107856603	5	5	1	1	1	1	107856548	5	0
LINE-L1__HAL1-2a_MD	chr12	107856799	107856975	5	5	1	1	1	1	107856887	5	0
LINE-L1__HAL1-2a_MD	chr12	107856999	107857174	5	5	1	1	1	1	107857086	5	0
LINE-L1__HAL1-2a_MD	chr12	107890939	107891107	5	5	1	1	1	1	107891023	5	0
LINE-L1__HAL1-2a_MD	chr12	107891109	107891297	5	5	1	1	1	1	107891203	5	0
LINE-L1__HAL1-2a_MD	chr12	107922553	107922658	5	5	1	1	1	1	107922605	5	0
LINE-L1__HAL1-2a_MD	chr12	107922659	107922864	5	5	1	1	1	1	107922761	5	0
LINE-L1__HAL1-2a_MD	chr12	108564101	108564244	5	5	1	1	1	1	108564172	5	0
LINE-L1__HAL1-2a_MD	chr12	108621470	108621667	5	5	1	1	1	1	108621568	5	0
LINE-L1__HAL1-2a_MD	chr12	108783574	108783738	5	5	1	1	1	1	108783656	5	0
LINE-L1__HAL1-2a_MD	chr12	108971334	108971512	5	5	1	1	1	1	108971423	5	0
LINE-L1__HAL1-2a_MD	chr12	108972213	108972380	5	5	1	1	1	1	108972296	5	0
LINE-L1__HAL1-2a_MD	chr12	108972359	108972654	5	5	1	1	1	1	108972506	5	0
LINE-L1__HAL1-2a_MD	chr12	109291748	109291954	5	5	1	1	1	1	109291851	5	0
LINE-L1__HAL1-2a_MD	chr12	109292147	109292364	5	5	1	1	1	1	109292255	5	0
LINE-L1__HAL1-2a_MD	chr12	109292814	109293015	5	5	1	1	1	1	109292914	5	0
LINE-L1__HAL1-2a_MD	chr12	110071976	110072179	5	5	1	1	1	1	110072077	5	0
LINE-L1__HAL1-2a_MD	chr12	110072359	110072388	5	5	1	1	1	1	110072373	5	0
LINE-L1__HAL1-2a_MD	chr12	111318539	111318720	5	5	1	1	1	1	111318629	5	0
LINE-L1__HAL1-2a_MD	chr12	113496960	113497127	5	5	1	1	1	1	113497043	5	0
LINE-L1__HAL1-2a_MD	chr12	113497218	113497301	5	5	1	1	1	1	113497259	5	0
LINE-L1__HAL1-2a_MD	chr12	114943912	114944096	5	5	1	1	1	1	114944004	5	0
LINE-L1__HAL1-2a_MD	chr12	115615883	115616049	5	5	1	1	1	1	115615966	5	0
LINE-L1__HAL1-2a_MD	chr12	116198757	116198872	5	5	1	1	1	1	116198814	5	0
LINE-L1__HAL1-2a_MD	chr12	117750663	117750833	5	5	1	1	1	1	117750748	5	0
LINE-L1__HAL1-2a_MD	chr12	117750839	117751006	5	5	1	1	1	1	117750922	5	0
LINE-L1__HAL1-2a_MD	chr12	118231998	118232156	5	5	1	1	1	1	118232077	5	0
LINE-L1__HAL1-2a_MD	chr12	118232242	118232395	5	5	1	1	1	1	118232318	5	0
LINE-L1__HAL1-2a_MD	chr12	118286549	118286692	5	5	1	1	1	1	118286620	5	0
LINE-L1__HAL1-2a_MD	chr12	118411548	118411588	5	5	1	1	1	1	118411568	5	0
LINE-L1__HAL1-2a_MD	chr12	119145524	119145578	5	5	1	1	1	1	119145551	5	0
LINE-L1__HAL1-2a_MD	chr12	119145759	119145852	5	5	1	1	1	1	119145805	5	0
LINE-L1__HAL1-2a_MD	chr12	119146032	119146097	5	5	1	1	1	1	119146064	5	0
LINE-L1__HAL1-2a_MD	chr12	124577385	124577561	5	5	1	1	1	1	124577473	5	0
LINE-L1__HAL1-2a_MD	chr12	124577868	124578024	5	5	1	1	1	1	124577946	5	0
LINE-L1__HAL1-2a_MD	chr12	124578205	124578225	5	5	1	1	1	1	124578215	5	0
LINE-L1__HAL1-2a_MD	chr12	124719453	124719498	5	5	1	1	1	1	124719475	5	0
LINE-L1__HAL1-2a_MD	chr12	124719679	124719775	5	5	1	1	1	1	124719727	5	0
LINE-L1__HAL1-2a_MD	chr12	124951523	124951707	5	5	1	1	1	1	124951615	5	0
LINE-L1__HAL1-2a_MD	chr12	124951754	124951918	5	5	1	1	1	1	124951836	5	0
LINE-L1__HAL1-2a_MD	chr12	124951913	124952075	5	5	1	1	1	1	124951994	5	0
LINE-L1__HAL1-2a_MD	chr12	124952143	124952404	5	5	1	1	1	1	124952273	5	0
LINE-L1__HAL1-2a_MD	chr12	124953016	124953234	5	5	1	1	1	1	124953125	5	0
LINE-L1__HAL1-2a_MD	chr12	124953263	124953552	5	5	1	1	1	1	124953407	5	0
LINE-L1__HAL1-2a_MD	chr12	125675032	125675183	5	5	1	1	1	1	125675107	5	0
LINE-L1__HAL1-2a_MD	chr12	126162403	126162562	5	5	1	1	1	1	126162482	5	0
LINE-L1__HAL1-2a_MD	chr12	126163227	126163395	5	5	1	1	1	1	126163311	5	0
LINE-L1__HAL1-2a_MD	chr12	126163396	126163549	5	5	1	1	1	1	126163472	5	0
LINE-L1__HAL1-2a_MD	chr12	126369138	126369332	5	5	1	1	1	1	126369235	5	0
LINE-L1__HAL1-2a_MD	chr12	128181152	128181346	5	5	1	1	1	1	128181249	5	0
LINE-L1__HAL1-2a_MD	chr12	128316821	128317031	5	5	1	1	1	1	128316926	5	0
LINE-L1__HAL1-2a_MD	chr12	128746357	128746441	5	5	1	1	1	1	128746399	5	0
LINE-L1__HAL1-2a_MD	chr12	128746621	128746668	5	5	1	1	1	1	128746644	5	0
LINE-L1__HAL1-2a_MD	chr12	129123365	129123419	5	5	1	1	1	1	129123392	5	0
LINE-L1__HAL1-2a_MD	chr12	129123597	129123723	5	5	1	1	1	1	129123660	5	0
LINE-L1__HAL1-2a_MD	chr12	129123747	129123916	5	5	1	1	1	1	129123831	5	0
LINE-L1__HAL1-2a_MD	chr12	129621202	129621382	5	5	1	1	1	1	129621292	5	0
LINE-L1__HAL1-2a_MD	chr12	129621392	129621567	5	5	1	1	1	1	129621479	5	0
LINE-L1__HAL1-2a_MD	chr12	129621695	129621859	5	5	1	1	1	1	129621777	5	0
LINE-L1__HAL1-2a_MD	chr12	129855761	129855924	5	5	1	1	1	1	129855842	5	0
LINE-L1__HAL1-2a_MD	chr12	129855925	129856091	5	5	1	1	1	1	129856008	5	0
LINE-L1__HAL1-2a_MD	chr12	129856092	129856242	5	5	1	1	1	1	129856167	5	0
LINE-L1__HAL1-2a_MD	chr12	129856270	129856285	5	5	1	1	1	1	129856277	5	0
LINE-L1__HAL1-2a_MD	chr12	129871897	129872136	5	5	1	1	1	1	129872016	5	0
LINE-L1__HAL1-2a_MD	chr12	129988570	129988738	5	5	1	1	1	1	129988654	5	0
LINE-L1__HAL1-2a_MD	chr12	130928212	130928376	5	5	1	1	1	1	130928294	5	0
LINE-L1__HAL1-2a_MD	chr12	131067943	131068098	5	5	1	1	1	1	131068020	5	0
LINE-L1__HAL1-2a_MD	chr12	131068130	131068301	5	5	1	1	1	1	131068215	5	0
LINE-L1__HAL1-2a_MD	chr12	131068487	131068663	5	5	1	1	1	1	131068575	5	0
LINE-L1__HAL1-2a_MD	chr12	131069163	131069358	5	5	1	1	1	1	131069260	5	0
LINE-L1__HAL1-2a_MD	chr12	131111282	131111458	5	5	1	1	1	1	131111370	5	0
LINE-L1__HAL1-2a_MD	chr12	131111533	131111714	5	5	1	1	1	1	131111623	5	0
LINE-L1__HAL1-2a_MD	chr12	131243226	131243464	5	5	1	1	1	1	131243345	5	0
LINE-L1__HAL1-2a_MD	chr12	131243507	131243786	5	5	1	1	1	1	131243646	5	0
LINE-L1__HAL1-2a_MD	chr12	131243773	131243967	5	5	1	1	1	1	131243870	5	0
LINE-L1__HAL1-2a_MD	chr12	131248620	131248767	5	5	1	1	1	1	131248693	5	0
LINE-L1__HAL1-2a_MD	chr12	131248849	131249017	5	5	1	1	1	1	131248933	5	0
LINE-L1__HAL1-2a_MD	chr12	131249019	131249178	5	5	1	1	1	1	131249098	5	0
LINE-L1__HAL1-2a_MD	chr12	131249211	131249392	5	5	1	1	1	1	131249301	5	0
LINE-L1__HAL1-2a_MD	chr12	131249417	131249589	5	5	1	1	1	1	131249503	5	0
LINE-L1__HAL1-2a_MD	chr12	131249600	131249683	5	5	1	1	1	1	131249641	5	0
LINE-L1__HAL1-2a_MD	chr12	131249693	131249841	5	5	1	1	1	1	131249767	5	0
LINE-L1__HAL1-2a_MD	chr12	131249862	131250025	5	5	1	1	1	1	131249943	5	0
LINE-L1__HAL1-2a_MD	chr12	131250050	131250206	5	5	1	1	1	1	131250128	5	0
LINE-L1__HAL1-2a_MD	chr12	131250209	131250308	5	5	1	1	1	1	131250258	5	0
LINE-L1__HAL1-2a_MD	chr12	131584634	131584827	5	5	1	1	1	1	131584730	5	0
LINE-L1__HAL1-2a_MD	chr12	131584902	131585075	5	5	1	1	1	1	131584988	5	0
LINE-L1__HAL1-2a_MD	chr12	131683548	131683736	5	5	1	1	1	1	131683642	5	0
LINE-L1__HAL1-2a_MD	chr12	131684051	131684206	5	5	1	1	1	1	131684128	5	0
LINE-L1__HAL1-2a_MD	chr12	131756374	131756546	5	5	1	1	1	1	131756460	5	0
LINE-L1__HAL1-2a_MD	chr12	131768038	131768188	5	5	1	1	1	1	131768113	5	0
LINE-L1__HAL1-2a_MD	chr12	131787899	131788081	5	5	1	1	1	1	131787990	5	0
LINE-L1__HAL1-2a_MD	chr12	131788412	131788583	5	5	1	1	1	1	131788497	5	0
LINE-L1__HAL1-2a_MD	chr12	131788584	131788750	5	5	1	1	1	1	131788667	5	0
LINE-L1__HAL1-2a_MD	chr12	131880123	131880147	5	5	1	1	1	1	131880135	5	0
LINE-L1__HAL1-2a_MD	chr12	131880632	131880764	5	5	1	1	1	1	131880698	5	0
LINE-L1__HAL1-2a_MD	chr12	131880826	131880984	5	5	1	1	1	1	131880905	5	0
LINE-L1__HAL1-2a_MD	chr12	131883597	131883782	5	5	1	1	1	1	131883689	5	0
LINE-L1__HAL1-2a_MD	chr12	131883784	131883942	5	5	1	1	1	1	131883863	5	0
LINE-L1__HAL1-2a_MD	chr12	132023849	132023897	5	5	1	1	1	1	132023873	5	0
LINE-L1__HAL1-2a_MD	chr12	132024079	132024187	5	5	1	1	1	1	132024133	5	0
LINE-L1__HAL1-2a_MD	chr12	132024197	132024373	5	5	1	1	1	1	132024285	5	0
LINE-L1__HAL1-2a_MD	chr12	132024375	132024434	5	5	1	1	1	1	132024404	5	0
LINE-L1__HAL1-2a_MD	chr12	132024440	132024624	5	5	1	1	1	1	132024532	5	0
LINE-L1__HAL1-2a_MD	chr12	132024957	132025048	5	5	1	1	1	1	132025002	5	0
LINE-L1__HAL1-2a_MD	chr12	132141158	132141324	5	5	1	1	1	1	132141241	5	0
LINE-L1__HAL1-2a_MD	chr12	132141325	132141496	5	5	1	1	1	1	132141410	5	0
LINE-L1__HAL1-2a_MD	chr12	132141815	132141997	5	5	1	1	1	1	132141906	5	0
LINE-L1__HAL1-2a_MD	chr12	132167346	132167502	5	5	1	1	1	1	132167424	5	0
LINE-L1__HAL1-2a_MD	chr12	132167543	132167704	5	5	1	1	1	1	132167623	5	0
LINE-L1__HAL1-2a_MD	chr12	132867600	132867754	5	5	1	1	1	1	132867677	5	0
LINE-L1__HAL1-2a_MD	chr12	132926062	132926239	5	5	1	1	1	1	132926150	5	0
LINE-L1__HAL1-2a_MD	chr12	133040268	133040389	5	5	1	1	1	1	133040328	5	0
LINE-L1__HAL1-2a_MD	chr12	133040573	133040612	5	5	1	1	1	1	133040592	5	0
LINE-L1__HAL1-2a_MD	chr12	133319267	133319417	5	5	1	1	1	1	133319342	5	0
LINE-L1__HAL1-2a_MD	chr13	19642147	19642301	5	5	1	1	1	1	19642224	5	0
LINE-L1__HAL1-2a_MD	chr13	19642373	19642569	5	5	1	1	1	1	19642471	5	0
LINE-L1__HAL1-2a_MD	chr13	19642591	19642765	5	5	1	1	1	1	19642678	5	0
LINE-L1__HAL1-2a_MD	chr13	19648922	19649113	5	5	1	1	1	1	19649017	5	0
LINE-L1__HAL1-2a_MD	chr13	20970839	20970976	5	5	1	1	1	1	20970907	5	0
LINE-L1__HAL1-2a_MD	chr13	20971141	20971259	5	5	1	1	1	1	20971200	5	0
LINE-L1__HAL1-2a_MD	chr13	22299984	22300013	5	5	1	1	1	1	22299998	5	0
LINE-L1__HAL1-2a_MD	chr13	22300195	22300313	5	5	1	1	1	1	22300254	5	0
LINE-L1__HAL1-2a_MD	chr13	32746011	32746293	5	5	1	1	1	1	32746152	5	0
LINE-L1__HAL1-2a_MD	chr13	32746260	32746510	5	5	1	1	1	1	32746385	5	0
LINE-L1__HAL1-2a_MD	chr13	48184959	48185145	5	5	1	1	1	1	48185052	5	0
LINE-L1__HAL1-2a_MD	chr13	97121915	97122051	5	5	1	1	1	1	97121983	5	0
LINE-L1__HAL1-2a_MD	chr13	109200885	109201061	5	5	1	1	1	1	109200973	5	0
LINE-L1__HAL1-2a_MD	chr13	113180579	113180734	5	5	1	1	1	1	113180656	5	0
LINE-L1__HAL1-2a_MD	chr13	113180862	113181053	5	5	1	1	1	1	113180957	5	0
LINE-L1__HAL1-2a_MD	chr13	113181069	113181234	5	5	1	1	1	1	113181151	5	0
LINE-L1__HAL1-2a_MD	chr13	114489444	114489622	5	5	1	1	1	1	114489533	5	0
LINE-L1__HAL1-2a_MD	chr13	114919104	114919287	5	5	1	1	1	1	114919195	5	0
LINE-L1__HAL1-2a_MD	chr14	35793835	35794153	5	5	1	1	1	1	35793994	5	0
LINE-L1__HAL1-2a_MD	chr14	52805721	52805965	5	5	1	1	1	1	52805843	5	0
LINE-L1__HAL1-2a_MD	chr14	52805935	52806096	5	5	1	1	1	1	52806015	5	0
LINE-L1__HAL1-2a_MD	chr14	52806083	52806409	5	5	1	1	1	1	52806246	5	0
LINE-L1__HAL1-2a_MD	chr14	61652349	61652627	5	5	1	1	1	1	61652488	5	0
LINE-L1__HAL1-2a_MD	chr14	94188571	94188726	5	5	1	1	1	1	94188648	5	0
LINE-L1__HAL1-2a_MD	chr14	94188971	94189145	5	5	1	1	1	1	94189058	5	0
LINE-L1__HAL1-2a_MD	chr14	95532543	95532729	5	5	1	1	1	1	95532636	5	0
LINE-L1__HAL1-2a_MD	chr14	95533133	95533309	5	5	1	1	1	1	95533221	5	0
LINE-L1__HAL1-2a_MD	chr14	95886085	95886274	5	5	1	1	1	1	95886179	5	0
LINE-L1__HAL1-2a_MD	chr14	98042066	98042228	5	5	1	1	1	1	98042147	5	0
LINE-L1__HAL1-2a_MD	chr14	99162273	99162446	5	5	1	1	1	1	99162359	5	0
LINE-L1__HAL1-2a_MD	chr14	100418499	100418677	5	5	1	1	1	1	100418588	5	0
LINE-L1__HAL1-2a_MD	chr14	104698248	104698421	5	5	1	1	1	1	104698334	5	0
LINE-L1__HAL1-2a_MD	chr14	104698423	104698599	5	5	1	1	1	1	104698511	5	0
LINE-L1__HAL1-2a_MD	chr14	104698779	104698940	5	5	1	1	1	1	104698859	5	0
LINE-L1__HAL1-2a_MD	chr15	27720676	27720851	5	5	1	1	1	1	27720763	5	0
LINE-L1__HAL1-2a_MD	chr15	27720909	27721077	5	5	1	1	1	1	27720993	5	0
LINE-L1__HAL1-2a_MD	chr15	34993348	34993467	5	5	1	1	1	1	34993407	5	0
LINE-L1__HAL1-2a_MD	chr15	35130683	35130857	5	5	1	1	1	1	35130770	5	0
LINE-L1__HAL1-2a_MD	chr15	45753775	45753910	5	5	1	1	1	1	45753842	5	0
LINE-L1__HAL1-2a_MD	chr15	45754087	45754099	5	5	1	1	1	1	45754093	5	0
LINE-L1__HAL1-2a_MD	chr15	69898278	69898427	5	5	1	1	1	1	69898352	5	0
LINE-L1__HAL1-2a_MD	chr15	70514349	70514533	5	5	1	1	1	1	70514441	5	0
LINE-L1__HAL1-2a_MD	chr15	70514523	70514706	5	5	1	1	1	1	70514614	5	0
LINE-L1__HAL1-2a_MD	chr15	70605619	70605773	5	5	1	1	1	1	70605696	5	0
LINE-L1__HAL1-2a_MD	chr15	74185208	74185360	5	5	1	1	1	1	74185284	5	0
LINE-L1__HAL1-2a_MD	chr15	81467891	81468061	5	5	1	1	1	1	81467976	5	0
LINE-L1__HAL1-2a_MD	chr15	88458195	88458355	5	5	1	1	1	1	88458275	5	0
LINE-L1__HAL1-2a_MD	chr15	101250380	101250571	5	5	1	1	1	1	101250475	5	0
LINE-L1__HAL1-2a_MD	chr16	4261678	4261849	5	5	1	1	1	1	4261763	5	0
LINE-L1__HAL1-2a_MD	chr16	5537955	5538173	5	5	1	1	1	1	5538064	5	0
LINE-L1__HAL1-2a_MD	chr16	5538213	5538385	5	5	1	1	1	1	5538299	5	0
LINE-L1__HAL1-2a_MD	chr16	5538407	5538589	5	5	1	1	1	1	5538498	5	0
LINE-L1__HAL1-2a_MD	chr16	5780936	5781085	5	5	1	1	1	1	5781010	5	0
LINE-L1__HAL1-2a_MD	chr16	5781086	5781251	5	5	1	1	1	1	5781168	5	0
LINE-L1__HAL1-2a_MD	chr16	6742774	6742959	5	5	1	1	1	1	6742866	5	0
LINE-L1__HAL1-2a_MD	chr16	6743228	6743406	5	5	1	1	1	1	6743317	5	0
LINE-L1__HAL1-2a_MD	chr16	6743478	6743665	5	5	1	1	1	1	6743571	5	0
LINE-L1__HAL1-2a_MD	chr16	7339364	7339495	5	5	1	1	1	1	7339429	5	0
LINE-L1__HAL1-2a_MD	chr16	7339503	7339688	5	5	1	1	1	1	7339595	5	0
LINE-L1__HAL1-2a_MD	chr16	7368056	7368241	5	5	1	1	1	1	7368148	5	0
LINE-L1__HAL1-2a_MD	chr16	8618369	8618482	5	5	1	1	1	1	8618425	5	0
LINE-L1__HAL1-2a_MD	chr16	9285389	9285548	5	5	1	1	1	1	9285468	5	0
LINE-L1__HAL1-2a_MD	chr16	9285663	9285837	5	5	1	1	1	1	9285750	5	0
LINE-L1__HAL1-2a_MD	chr16	9888765	9888924	5	5	1	1	1	1	9888844	5	0
LINE-L1__HAL1-2a_MD	chr16	10006049	10006203	5	5	1	1	1	1	10006126	5	0
LINE-L1__HAL1-2a_MD	chr16	10953155	10953284	5	5	1	1	1	1	10953219	5	0
LINE-L1__HAL1-2a_MD	chr16	10953465	10953520	5	5	1	1	1	1	10953492	5	0
LINE-L1__HAL1-2a_MD	chr16	12515598	12515776	5	5	1	1	1	1	12515687	5	0
LINE-L1__HAL1-2a_MD	chr16	12515777	12515954	5	5	1	1	1	1	12515865	5	0
LINE-L1__HAL1-2a_MD	chr16	15590012	15590133	5	5	1	1	1	1	15590072	5	0
LINE-L1__HAL1-2a_MD	chr16	17237042	17237167	5	5	1	1	1	1	17237104	5	0
LINE-L1__HAL1-2a_MD	chr16	17237602	17237797	5	5	1	1	1	1	17237699	5	0
LINE-L1__HAL1-2a_MD	chr16	17326464	17326700	5	5	1	1	1	1	17326582	5	0
LINE-L1__HAL1-2a_MD	chr16	17562117	17562400	5	5	1	1	1	1	17562258	5	0
LINE-L1__HAL1-2a_MD	chr16	18130978	18131160	5	5	1	1	1	1	18131069	5	0
LINE-L1__HAL1-2a_MD	chr16	18131166	18131302	5	5	1	1	1	1	18131234	5	0
LINE-L1__HAL1-2a_MD	chr16	20402274	20402447	5	5	1	1	1	1	20402360	5	0
LINE-L1__HAL1-2a_MD	chr16	23327671	23327844	5	5	1	1	1	1	23327757	5	0
LINE-L1__HAL1-2a_MD	chr16	23327956	23328143	5	5	1	1	1	1	23328049	5	0
LINE-L1__HAL1-2a_MD	chr16	23328144	23328322	5	5	1	1	1	1	23328233	5	0
LINE-L1__HAL1-2a_MD	chr16	24583543	24583769	5	5	1	1	1	1	24583656	5	0
LINE-L1__HAL1-2a_MD	chr16	26151481	26151688	5	5	1	1	1	1	26151584	5	0
LINE-L1__HAL1-2a_MD	chr16	26284932	26284997	5	5	1	1	1	1	26284964	5	0
LINE-L1__HAL1-2a_MD	chr16	26285178	26285285	5	5	1	1	1	1	26285231	5	0
LINE-L1__HAL1-2a_MD	chr16	26407010	26407212	5	5	1	1	1	1	26407111	5	0
LINE-L1__HAL1-2a_MD	chr16	26553469	26553619	5	5	1	1	1	1	26553544	5	0
LINE-L1__HAL1-2a_MD	chr16	26553641	26553818	5	5	1	1	1	1	26553729	5	0
LINE-L1__HAL1-2a_MD	chr16	27149636	27149821	5	5	1	1	1	1	27149728	5	0
LINE-L1__HAL1-2a_MD	chr16	27149838	27150005	5	5	1	1	1	1	27149921	5	0
LINE-L1__HAL1-2a_MD	chr16	27317603	27317785	5	5	1	1	1	1	27317694	5	0
LINE-L1__HAL1-2a_MD	chr16	27317876	27318078	5	5	1	1	1	1	27317977	5	0
LINE-L1__HAL1-2a_MD	chr16	47914699	47914851	5	5	1	1	1	1	47914775	5	0
LINE-L1__HAL1-2a_MD	chr16	50012533	50012685	5	5	1	1	1	1	50012609	5	0
LINE-L1__HAL1-2a_MD	chr16	52011754	52011891	5	5	1	1	1	1	52011822	5	0
LINE-L1__HAL1-2a_MD	chr16	57091697	57091851	5	5	1	1	1	1	57091774	5	0
LINE-L1__HAL1-2a_MD	chr16	57602211	57602385	5	5	1	1	1	1	57602298	5	0
LINE-L1__HAL1-2a_MD	chr16	57602825	57603007	5	5	1	1	1	1	57602916	5	0
LINE-L1__HAL1-2a_MD	chr16	57603380	57603585	5	5	1	1	1	1	57603482	5	0
LINE-L1__HAL1-2a_MD	chr16	65329513	65329717	5	5	1	1	1	1	65329615	5	0
LINE-L1__HAL1-2a_MD	chr16	65572591	65572689	5	5	1	1	1	1	65572640	5	0
LINE-L1__HAL1-2a_MD	chr16	66413860	66414044	5	5	1	1	1	1	66413952	5	0
LINE-L1__HAL1-2a_MD	chr16	66414175	66414359	5	5	1	1	1	1	66414267	5	0
LINE-L1__HAL1-2a_MD	chr16	66414435	66414610	5	5	1	1	1	1	66414522	5	0
LINE-L1__HAL1-2a_MD	chr16	66414648	66414836	5	5	1	1	1	1	66414742	5	0
LINE-L1__HAL1-2a_MD	chr16	71208938	71209085	5	5	1	1	1	1	71209011	5	0
LINE-L1__HAL1-2a_MD	chr16	71209152	71209317	5	5	1	1	1	1	71209234	5	0
LINE-L1__HAL1-2a_MD	chr16	78817777	78817937	5	5	1	1	1	1	78817857	5	0
LINE-L1__HAL1-2a_MD	chr16	79376414	79376560	5	5	1	1	1	1	79376487	5	0
LINE-L1__HAL1-2a_MD	chr16	79409363	79409523	5	5	1	1	1	1	79409443	5	0
LINE-L1__HAL1-2a_MD	chr16	79756346	79756503	5	5	1	1	1	1	79756424	5	0
LINE-L1__HAL1-2a_MD	chr16	79756657	79756805	5	5	1	1	1	1	79756731	5	0
LINE-L1__HAL1-2a_MD	chr16	80205285	80205471	5	5	1	1	1	1	80205378	5	0
LINE-L1__HAL1-2a_MD	chr16	80288972	80289175	5	5	1	1	1	1	80289073	5	0
LINE-L1__HAL1-2a_MD	chr16	81146157	81146317	5	5	1	1	1	1	81146237	5	0
LINE-L1__HAL1-2a_MD	chr16	81492595	81492697	5	5	1	1	1	1	81492646	5	0
LINE-L1__HAL1-2a_MD	chr16	81611218	81611400	5	5	1	1	1	1	81611309	5	0
LINE-L1__HAL1-2a_MD	chr16	81611733	81611907	5	5	1	1	1	1	81611820	5	0
LINE-L1__HAL1-2a_MD	chr16	82345273	82345541	5	5	1	1	1	1	82345407	5	0
LINE-L1__HAL1-2a_MD	chr16	82758665	82758822	5	5	1	1	1	1	82758743	5	0
LINE-L1__HAL1-2a_MD	chr16	83030420	83030596	5	5	1	1	1	1	83030508	5	0
LINE-L1__HAL1-2a_MD	chr16	83030600	83030782	5	5	1	1	1	1	83030691	5	0
LINE-L1__HAL1-2a_MD	chr16	83477681	83477859	5	5	1	1	1	1	83477770	5	0
LINE-L1__HAL1-2a_MD	chr16	85552803	85552970	5	5	1	1	1	1	85552886	5	0
LINE-L1__HAL1-2a_MD	chr16	85553245	85553394	5	5	1	1	1	1	85553319	5	0
LINE-L1__HAL1-2a_MD	chr16	85856954	85857102	5	5	1	1	1	1	85857028	5	0
LINE-L1__HAL1-2a_MD	chr16	85857283	85857315	5	5	1	1	1	1	85857299	5	0
LINE-L1__HAL1-2a_MD	chr16	85857320	85857484	5	5	1	1	1	1	85857402	5	0
LINE-L1__HAL1-2a_MD	chr16	86047449	86047641	5	5	1	1	1	1	86047545	5	0
LINE-L1__HAL1-2a_MD	chr16	86258257	86258579	5	5	1	1	1	1	86258418	5	0
LINE-L1__HAL1-2a_MD	chr16	86452668	86452807	5	5	1	1	1	1	86452737	5	0
LINE-L1__HAL1-2a_MD	chr16	86453247	86453419	5	5	1	1	1	1	86453333	5	0
LINE-L1__HAL1-2a_MD	chr16	86498128	86498295	5	5	1	1	1	1	86498211	5	0
LINE-L1__HAL1-2a_MD	chr16	86620998	86621192	5	5	1	1	1	1	86621095	5	0
LINE-L1__HAL1-2a_MD	chr16	86621547	86621726	5	5	1	1	1	1	86621636	5	0
LINE-L1__HAL1-2a_MD	chr16	86621915	86622060	5	5	1	1	1	1	86621987	5	0
LINE-L1__HAL1-2a_MD	chr16	86625030	86625212	5	5	1	1	1	1	86625121	5	0
LINE-L1__HAL1-2a_MD	chr16	86833056	86833246	5	5	1	1	1	1	86833151	5	0
LINE-L1__HAL1-2a_MD	chr16	86835684	86835788	5	5	1	1	1	1	86835736	5	0
LINE-L1__HAL1-2a_MD	chr16	86885559	86885653	5	5	1	1	1	1	86885606	5	0
LINE-L1__HAL1-2a_MD	chr16	86885834	86885860	5	5	1	1	1	1	86885847	5	0
LINE-L1__HAL1-2a_MD	chr16	86886046	86886112	5	5	1	1	1	1	86886079	5	0
LINE-L1__HAL1-2a_MD	chr16	86895435	86895599	5	5	1	1	1	1	86895517	5	0
LINE-L1__HAL1-2a_MD	chr16	86984729	86984907	5	5	1	1	1	1	86984818	5	0
LINE-L1__HAL1-2a_MD	chr16	86984938	86985115	5	5	1	1	1	1	86985026	5	0
LINE-L1__HAL1-2a_MD	chr16	86985170	86985455	5	5	1	1	1	1	86985312	5	0
LINE-L1__HAL1-2a_MD	chr16	87032406	87032558	5	5	1	1	1	1	87032482	5	0
LINE-L1__HAL1-2a_MD	chr16	87243668	87243837	5	5	1	1	1	1	87243752	5	0
LINE-L1__HAL1-2a_MD	chr16	87247046	87247213	5	5	1	1	1	1	87247129	5	0
LINE-L1__HAL1-2a_MD	chr16	87247298	87247478	5	5	1	1	1	1	87247388	5	0
LINE-L1__HAL1-2a_MD	chr16	87255886	87255915	5	5	1	1	1	1	87255900	5	0
LINE-L1__HAL1-2a_MD	chr16	87256094	87256237	5	5	1	1	1	1	87256165	5	0
LINE-L1__HAL1-2a_MD	chr16	87631131	87631306	5	5	1	1	1	1	87631218	5	0
LINE-L1__HAL1-2a_MD	chr16	87631325	87631491	5	5	1	1	1	1	87631408	5	0
LINE-L1__HAL1-2a_MD	chr16	87772901	87773190	5	5	1	1	1	1	87773045	5	0
LINE-L1__HAL1-2a_MD	chr16	88086221	88086402	5	5	1	1	1	1	88086311	5	0
LINE-L1__HAL1-2a_MD	chr16	88086426	88086610	5	5	1	1	1	1	88086518	5	0
LINE-L1__HAL1-2a_MD	chr16	88086713	88086893	5	5	1	1	1	1	88086803	5	0
LINE-L1__HAL1-2a_MD	chr16	88087157	88087334	5	5	1	1	1	1	88087245	5	0
LINE-L1__HAL1-2a_MD	chr16	88226249	88226382	5	5	1	1	1	1	88226315	5	0
LINE-L1__HAL1-2a_MD	chr16	88226389	88226561	5	5	1	1	1	1	88226475	5	0
LINE-L1__HAL1-2a_MD	chr16	88322887	88323066	5	5	1	1	1	1	88322976	5	0
LINE-L1__HAL1-2a_MD	chr16	88365249	88365409	5	5	1	1	1	1	88365329	5	0
LINE-L1__HAL1-2a_MD	chr16	88864482	88864580	5	5	1	1	1	1	88864531	5	0
LINE-L1__HAL1-2a_MD	chr16	88864594	88864769	5	5	1	1	1	1	88864681	5	0
LINE-L1__HAL1-2a_MD	chr16	89112397	89112576	5	5	1	1	1	1	89112486	5	0
LINE-L1__HAL1-2a_MD	chr16	89135807	89135965	5	5	1	1	1	1	89135886	5	0
LINE-L1__HAL1-2a_MD	chr17	193715	193902	5	5	1	1	1	1	193808	5	0
LINE-L1__HAL1-2a_MD	chr17	193904	194081	5	5	1	1	1	1	193992	5	0
LINE-L1__HAL1-2a_MD	chr17	194090	194259	5	5	1	1	1	1	194174	5	0
LINE-L1__HAL1-2a_MD	chr17	194311	194486	5	5	1	1	1	1	194398	5	0
LINE-L1__HAL1-2a_MD	chr17	194498	194628	5	5	1	1	1	1	194563	5	0
LINE-L1__HAL1-2a_MD	chr17	582268	582473	5	5	1	1	1	1	582370	5	0
LINE-L1__HAL1-2a_MD	chr17	582780	582935	5	5	1	1	1	1	582857	5	0
LINE-L1__HAL1-2a_MD	chr17	1196808	1196993	5	5	1	1	1	1	1196900	5	0
LINE-L1__HAL1-2a_MD	chr17	6097164	6097210	5	5	1	1	1	1	6097187	5	0
LINE-L1__HAL1-2a_MD	chr17	6097390	6097426	5	5	1	1	1	1	6097408	5	0
LINE-L1__HAL1-2a_MD	chr17	6097606	6097730	5	5	1	1	1	1	6097668	5	0
LINE-L1__HAL1-2a_MD	chr17	6177624	6177701	5	5	1	1	1	1	6177662	5	0
LINE-L1__HAL1-2a_MD	chr17	6177882	6177945	5	5	1	1	1	1	6177913	5	0
LINE-L1__HAL1-2a_MD	chr17	8989935	8990047	5	5	1	1	1	1	8989991	5	0
LINE-L1__HAL1-2a_MD	chr17	8990088	8990263	5	5	1	1	1	1	8990175	5	0
LINE-L1__HAL1-2a_MD	chr17	10200912	10201120	5	5	1	1	1	1	10201016	5	0
LINE-L1__HAL1-2a_MD	chr17	10201151	10201357	5	5	1	1	1	1	10201254	5	0
LINE-L1__HAL1-2a_MD	chr17	10750419	10750569	5	5	1	1	1	1	10750494	5	0
LINE-L1__HAL1-2a_MD	chr17	11179897	11180062	5	5	1	1	1	1	11179979	5	0
LINE-L1__HAL1-2a_MD	chr17	11634209	11634383	5	5	1	1	1	1	11634296	5	0
LINE-L1__HAL1-2a_MD	chr17	14298740	14298917	5	5	1	1	1	1	14298828	5	0
LINE-L1__HAL1-2a_MD	chr17	15332776	15332948	5	5	1	1	1	1	15332862	5	0
LINE-L1__HAL1-2a_MD	chr17	17363356	17363423	5	5	1	1	1	1	17363389	5	0
LINE-L1__HAL1-2a_MD	chr17	17363612	17363719	5	5	1	1	1	1	17363665	5	0
LINE-L1__HAL1-2a_MD	chr17	21553400	21553576	5	5	1	1	1	1	21553488	5	0
LINE-L1__HAL1-2a_MD	chr17	22211763	22211959	5	5	1	1	1	1	22211861	5	0
LINE-L1__HAL1-2a_MD	chr17	31725492	31725661	5	5	1	1	1	1	31725576	5	0
LINE-L1__HAL1-2a_MD	chr17	32888475	32888642	5	5	1	1	1	1	32888558	5	0
LINE-L1__HAL1-2a_MD	chr17	32893214	32893405	5	5	1	1	1	1	32893309	5	0
LINE-L1__HAL1-2a_MD	chr17	32893533	32893726	5	5	1	1	1	1	32893629	5	0
LINE-L1__HAL1-2a_MD	chr17	33097008	33097172	5	5	1	1	1	1	33097090	5	0
LINE-L1__HAL1-2a_MD	chr17	39754820	39754988	5	5	1	1	1	1	39754904	5	0
LINE-L1__HAL1-2a_MD	chr17	39754993	39755150	5	5	1	1	1	1	39755071	5	0
LINE-L1__HAL1-2a_MD	chr17	43059670	43059816	5	5	1	1	1	1	43059743	5	0
LINE-L1__HAL1-2a_MD	chr17	43062565	43062745	5	5	1	1	1	1	43062655	5	0
LINE-L1__HAL1-2a_MD	chr17	43836040	43836208	5	5	1	1	1	1	43836124	5	0
LINE-L1__HAL1-2a_MD	chr17	47569316	47569471	5	5	1	1	1	1	47569393	5	0
LINE-L1__HAL1-2a_MD	chr17	54870024	54870093	5	5	1	1	1	1	54870058	5	0
LINE-L1__HAL1-2a_MD	chr17	54870274	54870381	5	5	1	1	1	1	54870327	5	0
LINE-L1__HAL1-2a_MD	chr17	56194755	56194944	5	5	1	1	1	1	56194849	5	0
LINE-L1__HAL1-2a_MD	chr17	56194954	56195095	5	5	1	1	1	1	56195024	5	0
LINE-L1__HAL1-2a_MD	chr17	63216151	63216239	5	5	1	1	1	1	63216195	5	0
LINE-L1__HAL1-2a_MD	chr17	71501699	71501869	5	5	1	1	1	1	71501784	5	0
LINE-L1__HAL1-2a_MD	chr17	72072751	72072945	5	5	1	1	1	1	72072848	5	0
LINE-L1__HAL1-2a_MD	chr17	72510104	72510259	5	5	1	1	1	1	72510181	5	0
LINE-L1__HAL1-2a_MD	chr17	75481329	75481507	5	5	1	1	1	1	75481418	5	0
LINE-L1__HAL1-2a_MD	chr17	75505201	75505365	5	5	1	1	1	1	75505283	5	0
LINE-L1__HAL1-2a_MD	chr17	75505368	75505497	5	5	1	1	1	1	75505432	5	0
LINE-L1__HAL1-2a_MD	chr17	75505499	75505676	5	5	1	1	1	1	75505587	5	0
LINE-L1__HAL1-2a_MD	chr17	75505858	75506043	5	5	1	1	1	1	75505950	5	0
LINE-L1__HAL1-2a_MD	chr17	75805867	75805962	5	5	1	1	1	1	75805914	5	0
LINE-L1__HAL1-2a_MD	chr17	75806338	75806376	5	5	1	1	1	1	75806357	5	0
LINE-L1__HAL1-2a_MD	chr17	75845676	75845921	5	5	1	1	1	1	75845798	5	0
LINE-L1__HAL1-2a_MD	chr17	75845892	75846554	5	5	1	1	1	1	75846223	5	0
LINE-L1__HAL1-2a_MD	chr17	75846609	75847019	5	5	1	1	1	1	75846814	5	0
LINE-L1__HAL1-2a_MD	chr17	75846987	75847178	5	5	1	1	1	1	75847082	5	0
LINE-L1__HAL1-2a_MD	chr17	76474175	76474349	5	5	1	1	1	1	76474262	5	0
LINE-L1__HAL1-2a_MD	chr17	76474503	76474676	5	5	1	1	1	1	76474589	5	0
LINE-L1__HAL1-2a_MD	chr17	77868106	77868258	5	5	1	1	1	1	77868182	5	0
LINE-L1__HAL1-2a_MD	chr17	78287817	78288006	5	5	1	1	1	1	78287911	5	0
LINE-L1__HAL1-2a_MD	chr17	78288259	78288438	5	5	1	1	1	1	78288348	5	0
LINE-L1__HAL1-2a_MD	chr17	78289068	78289326	5	5	1	1	1	1	78289197	5	0
LINE-L1__HAL1-2a_MD	chr17	78289342	78289525	5	5	1	1	1	1	78289433	5	0
LINE-L1__HAL1-2a_MD	chr17	79398271	79398491	5	5	1	1	1	1	79398381	5	0
LINE-L1__HAL1-2a_MD	chr17	79398516	79398685	5	5	1	1	1	1	79398600	5	0
LINE-L1__HAL1-2a_MD	chr17	79398777	79399065	5	5	1	1	1	1	79398921	5	0
LINE-L1__HAL1-2a_MD	chr17	79399089	79399275	5	5	1	1	1	1	79399182	5	0
LINE-L1__HAL1-2a_MD	chr17	79399253	79399440	5	5	1	1	1	1	79399346	5	0
LINE-L1__HAL1-2a_MD	chr17	79399434	79399639	5	5	1	1	1	1	79399536	5	0
LINE-L1__HAL1-2a_MD	chr17	79399646	79399831	5	5	1	1	1	1	79399738	5	0
LINE-L1__HAL1-2a_MD	chr17	79498175	79498191	5	5	1	1	1	1	79498183	5	0
LINE-L1__HAL1-2a_MD	chr17	79498372	79498421	5	5	1	1	1	1	79498396	5	0
LINE-L1__HAL1-2a_MD	chr17	79498815	79498912	5	5	1	1	1	1	79498863	5	0
LINE-L1__HAL1-2a_MD	chr17	80217787	80217948	5	5	1	1	1	1	80217867	5	0
LINE-L1__HAL1-2a_MD	chr17	80218198	80218383	5	5	1	1	1	1	80218290	5	0
LINE-L1__HAL1-2a_MD	chr17	80218483	80218712	5	5	1	1	1	1	80218597	5	0
LINE-L1__HAL1-2a_MD	chr17	80322559	80322578	5	5	1	1	1	1	80322568	5	0
LINE-L1__HAL1-2a_MD	chr17	80322871	80322984	5	5	1	1	1	1	80322927	5	0
LINE-L1__HAL1-2a_MD	chr18	28730420	28730606	5	5	1	1	1	1	28730513	5	0
LINE-L1__HAL1-2a_MD	chr18	34232504	34232747	5	5	1	1	1	1	34232625	5	0
LINE-L1__HAL1-2a_MD	chr18	44096524	44096688	5	5	1	1	1	1	44096606	5	0
LINE-L1__HAL1-2a_MD	chr18	44278012	44278294	5	5	1	1	1	1	44278153	5	0
LINE-L1__HAL1-2a_MD	chr18	74055814	74055953	5	5	1	1	1	1	74055883	5	0
LINE-L1__HAL1-2a_MD	chr18	74055978	74056148	5	5	1	1	1	1	74056063	5	0
LINE-L1__HAL1-2a_MD	chr18	74056222	74056404	5	5	1	1	1	1	74056313	5	0
LINE-L1__HAL1-2a_MD	chr18	74056479	74056666	5	5	1	1	1	1	74056572	5	0
LINE-L1__HAL1-2a_MD	chr18	75167027	75167215	5	5	1	1	1	1	75167121	5	0
LINE-L1__HAL1-2a_MD	chr18	75669052	75669184	5	5	1	1	1	1	75669118	5	0
LINE-L1__HAL1-2a_MD	chr18	75669237	75669410	5	5	1	1	1	1	75669323	5	0
LINE-L1__HAL1-2a_MD	chr18	75669441	75669708	5	5	1	1	1	1	75669574	5	0
LINE-L1__HAL1-2a_MD	chr18	75669914	75670071	5	5	1	1	1	1	75669992	5	0
LINE-L1__HAL1-2a_MD	chr18	75670172	75670329	5	5	1	1	1	1	75670250	5	0
LINE-L1__HAL1-2a_MD	chr18	76284954	76285176	5	5	1	1	1	1	76285065	5	0
LINE-L1__HAL1-2a_MD	chr20	6030449	6030612	5	5	1	1	1	1	6030530	5	0
LINE-L1__HAL1-2a_MD	chr20	10970029	10970192	5	5	1	1	1	1	10970110	5	0
LINE-L1__HAL1-2a_MD	chr20	10970198	10970378	5	5	1	1	1	1	10970288	5	0
LINE-L1__HAL1-2a_MD	chr20	19545001	19545156	5	5	1	1	1	1	19545078	5	0
LINE-L1__HAL1-2a_MD	chr20	22525787	22525976	5	5	1	1	1	1	22525881	5	0
LINE-L1__HAL1-2a_MD	chr20	23649903	23650088	5	5	1	1	1	1	23649995	5	0
LINE-L1__HAL1-2a_MD	chr20	23650323	23650502	5	5	1	1	1	1	23650412	5	0
LINE-L1__HAL1-2a_MD	chr20	23692350	23692524	5	5	1	1	1	1	23692437	5	0
LINE-L1__HAL1-2a_MD	chr20	23705635	23705812	5	5	1	1	1	1	23705723	5	0
LINE-L1__HAL1-2a_MD	chr20	23764052	23764260	5	5	1	1	1	1	23764156	5	0
LINE-L1__HAL1-2a_MD	chr20	23781482	23781638	5	5	1	1	1	1	23781560	5	0
LINE-L1__HAL1-2a_MD	chr20	23781693	23781869	5	5	1	1	1	1	23781781	5	0
LINE-L1__HAL1-2a_MD	chr20	23871435	23871589	5	5	1	1	1	1	23871512	5	0
LINE-L1__HAL1-2a_MD	chr20	23871861	23872029	5	5	1	1	1	1	23871945	5	0
LINE-L1__HAL1-2a_MD	chr20	23924004	23924154	5	5	1	1	1	1	23924079	5	0
LINE-L1__HAL1-2a_MD	chr20	23976702	23976840	5	5	1	1	1	1	23976771	5	0
LINE-L1__HAL1-2a_MD	chr20	25742223	25742409	5	5	1	1	1	1	25742316	5	0
LINE-L1__HAL1-2a_MD	chr20	25742565	25742763	5	5	1	1	1	1	25742664	5	0
LINE-L1__HAL1-2a_MD	chr20	26054653	26054819	5	5	1	1	1	1	26054736	5	0
LINE-L1__HAL1-2a_MD	chr20	26054832	26054997	5	5	1	1	1	1	26054914	5	0
LINE-L1__HAL1-2a_MD	chr20	31155698	31155887	5	5	1	1	1	1	31155792	5	0
LINE-L1__HAL1-2a_MD	chr20	31155895	31155995	5	5	1	1	1	1	31155945	5	0
LINE-L1__HAL1-2a_MD	chr20	33873651	33873753	5	5	1	1	1	1	33873702	5	0
LINE-L1__HAL1-2a_MD	chr20	36942119	36942294	5	5	1	1	1	1	36942206	5	0
LINE-L1__HAL1-2a_MD	chr20	36942963	36943130	5	5	1	1	1	1	36943046	5	0
LINE-L1__HAL1-2a_MD	chr20	37280195	37280384	5	5	1	1	1	1	37280289	5	0
LINE-L1__HAL1-2a_MD	chr20	37280436	37280598	5	5	1	1	1	1	37280517	5	0
LINE-L1__HAL1-2a_MD	chr20	37281764	37281952	5	5	1	1	1	1	37281858	5	0
LINE-L1__HAL1-2a_MD	chr20	37281955	37282071	5	5	1	1	1	1	37282013	5	0
LINE-L1__HAL1-2a_MD	chr20	37732133	37732308	5	5	1	1	1	1	37732220	5	0
LINE-L1__HAL1-2a_MD	chr20	39053499	39053547	5	5	1	1	1	1	39053523	5	0
LINE-L1__HAL1-2a_MD	chr20	40582128	40582279	5	5	1	1	1	1	40582203	5	0
LINE-L1__HAL1-2a_MD	chr20	44815767	44815903	5	5	1	1	1	1	44815835	5	0
LINE-L1__HAL1-2a_MD	chr20	44815945	44816357	5	5	1	1	1	1	44816151	5	0
LINE-L1__HAL1-2a_MD	chr20	46639375	46639528	5	5	1	1	1	1	46639451	5	0
LINE-L1__HAL1-2a_MD	chr20	46639530	46639713	5	5	1	1	1	1	46639621	5	0
LINE-L1__HAL1-2a_MD	chr20	49963429	49963827	5	5	1	1	1	1	49963628	5	0
LINE-L1__HAL1-2a_MD	chr20	49963838	49964029	5	5	1	1	1	1	49963933	5	0
LINE-L1__HAL1-2a_MD	chr20	51104065	51104211	5	5	1	1	1	1	51104138	5	0
LINE-L1__HAL1-2a_MD	chr20	54052086	54052171	5	5	1	1	1	1	54052128	5	0
LINE-L1__HAL1-2a_MD	chr20	55336405	55336584	5	5	1	1	1	1	55336494	5	0
LINE-L1__HAL1-2a_MD	chr20	55336609	55336779	5	5	1	1	1	1	55336694	5	0
LINE-L1__HAL1-2a_MD	chr20	55336780	55336934	5	5	1	1	1	1	55336857	5	0
LINE-L1__HAL1-2a_MD	chr20	57405249	57405344	5	5	1	1	1	1	57405296	5	0
LINE-L1__HAL1-2a_MD	chr20	57405522	57405594	5	5	1	1	1	1	57405558	5	0
LINE-L1__HAL1-2a_MD	chr20	57924544	57924708	5	5	1	1	1	1	57924626	5	0
LINE-L1__HAL1-2a_MD	chr20	58261566	58261722	5	5	1	1	1	1	58261644	5	0
LINE-L1__HAL1-2a_MD	chr20	58261906	58261927	5	5	1	1	1	1	58261916	5	0
LINE-L1__HAL1-2a_MD	chr20	58262148	58262348	5	5	1	1	1	1	58262248	5	0
LINE-L1__HAL1-2a_MD	chr20	59459663	59459839	5	5	1	1	1	1	59459751	5	0
LINE-L1__HAL1-2a_MD	chr20	59470691	59470872	5	5	1	1	1	1	59470781	5	0
LINE-L1__HAL1-2a_MD	chr20	59471018	59471208	5	5	1	1	1	1	59471113	5	0
LINE-L1__HAL1-2a_MD	chr20	59481196	59481319	5	5	1	1	1	1	59481257	5	0
LINE-L1__HAL1-2a_MD	chr20	59481631	59481696	5	5	1	1	1	1	59481663	5	0
LINE-L1__HAL1-2a_MD	chr20	59748242	59748517	5	5	1	1	1	1	59748379	5	0
LINE-L1__HAL1-2a_MD	chr20	59748552	59748814	5	5	1	1	1	1	59748683	5	0
LINE-L1__HAL1-2a_MD	chr20	59912256	59912461	5	5	1	1	1	1	59912358	5	0
LINE-L1__HAL1-2a_MD	chr20	59950415	59950575	5	5	1	1	1	1	59950495	5	0
LINE-L1__HAL1-2a_MD	chr20	59950671	59950847	5	5	1	1	1	1	59950759	5	0
LINE-L1__HAL1-2a_MD	chr20	59950851	59951032	5	5	1	1	1	1	59950941	5	0
LINE-L1__HAL1-2a_MD	chr20	59951037	59951312	5	5	1	1	1	1	59951174	5	0
LINE-L1__HAL1-2a_MD	chr20	60032586	60032775	5	5	1	1	1	1	60032680	5	0
LINE-L1__HAL1-2a_MD	chr20	60066714	60066817	5	5	1	1	1	1	60066765	5	0
LINE-L1__HAL1-2a_MD	chr20	60066829	60066986	5	5	1	1	1	1	60066907	5	0
LINE-L1__HAL1-2a_MD	chr20	60066990	60067148	5	5	1	1	1	1	60067069	5	0
LINE-L1__HAL1-2a_MD	chr20	60067149	60067346	5	5	1	1	1	1	60067247	5	0
LINE-L1__HAL1-2a_MD	chr20	60067347	60067455	5	5	1	1	1	1	60067401	5	0
LINE-L1__HAL1-2a_MD	chr20	60067439	60067618	5	5	1	1	1	1	60067528	5	0
LINE-L1__HAL1-2a_MD	chr20	60140277	60140476	5	5	1	1	1	1	60140376	5	0
LINE-L1__HAL1-2a_MD	chr20	60160985	60161169	5	5	1	1	1	1	60161077	5	0
LINE-L1__HAL1-2a_MD	chr20	60301677	60301815	5	5	1	1	1	1	60301746	5	0
LINE-L1__HAL1-2a_MD	chr20	60301900	60302061	5	5	1	1	1	1	60301980	5	0
LINE-L1__HAL1-2a_MD	chr20	60302161	60302323	5	5	1	1	1	1	60302242	5	0
LINE-L1__HAL1-2a_MD	chr20	60302350	60302545	5	5	1	1	1	1	60302447	5	0
LINE-L1__HAL1-2a_MD	chr20	60370064	60370239	5	5	1	1	1	1	60370151	5	0
LINE-L1__HAL1-2a_MD	chr20	60398269	60398430	5	5	1	1	1	1	60398349	5	0
LINE-L1__HAL1-2a_MD	chr20	60957173	60957345	5	5	1	1	1	1	60957259	5	0
LINE-L1__HAL1-2a_MD	chr20	60973254	60973414	5	5	1	1	1	1	60973334	5	0
LINE-L1__HAL1-2a_MD	chr20	61815441	61815579	5	5	1	1	1	1	61815510	5	0
LINE-L1__HAL1-2a_MD	chr20	62073927	62074017	5	5	1	1	1	1	62073972	5	0
LINE-L1__HAL1-2a_MD	chr20	62074378	62074425	5	5	1	1	1	1	62074401	5	0
LINE-L1__HAL1-2a_MD	chr20	62074602	62074643	5	5	1	1	1	1	62074622	5	0
LINE-L1__HAL1-2a_MD	chr20	62728317	62728484	5	5	1	1	1	1	62728400	5	0
LINE-L1__HAL1-2a_MD	chrY	367712	367874	5	5	1	1	1	1	367793	5	0
LINE-L1__HAL1-2a_MD	chrY	367845	368177	5	5	1	1	1	1	368011	5	0
LINE-L1__HAL1-2a_MD	chrY	368152	368558	5	5	1	1	1	1	368355	5	0
LINE-L1__HAL1-2a_MD	chrY	1973337	1973411	5	5	1	1	1	1	1973374	5	0
LINE-L1__HAL1-2a_MD	chrY	1973679	1973884	5	5	1	1	1	1	1973781	5	0
LINE-L1__HAL1-2a_MD	chrY	1973885	1973978	5	5	1	1	1	1	1973931	5	0
LINE-L1__HAL1-2a_MD	chrY	2250470	2250572	5	5	1	1	1	1	2250521	5	0
LINE-L1__HAL1-2a_MD	chrY	2250942	2250980	5	5	1	1	1	1	2250961	5	0
LINE-L1__HAL1-2a_MD	chrY	2250982	2251148	5	5	1	1	1	1	2251065	5	0
LINE-L1__HAL1-2a_MD	chrY	2251310	2251509	5	5	1	1	1	1	2251409	5	0
LINE-L1__HAL1-2a_MD	chrY	2387706	2387754	5	5	1	1	1	1	2387730	5	0
LINE-L1__HAL1-2a_MD	chrY	2387935	2388052	5	5	1	1	1	1	2387993	5	0
LINE-L1__HAL1-2a_MD	chrY	2388659	2388829	5	5	1	1	1	1	2388744	5	0
LINE-L1__HAL1-2a_MD	chrY	7327975	7328149	5	5	1	1	1	1	7328062	5	0
LINE-L1__HAL1-2a_MD	chrY	13203624	13203779	5	5	1	1	1	1	13203701	5	0
LINE-L1__HAL1-2a_MD	chrY	13203781	13203945	5	5	1	1	1	1	13203863	5	0
LINE-L1__HAL1-2a_MD	chrY	13203982	13204163	5	5	1	1	1	1	13204072	5	0
LINE-L1__HAL1-2a_MD	chrY	13204188	13204365	5	5	1	1	1	1	13204276	5	0
LINE-L1__HAL1-2a_MD	chrY	13204390	13204561	5	5	1	1	1	1	13204475	5	0
LINE-L1__HAL1-2a_MD	chrY	14138602	14138720	5	5	1	1	1	1	14138661	5	0
LINE-L1__HAL1-2a_MD	chrY	16757681	16757873	5	5	1	1	1	1	16757777	5	0
LINE-L1__HAL1-2a_MD	chrY	16757874	16758032	5	5	1	1	1	1	16757953	5	0
LINE-L1__HAL1-2a_MD	chrY	17422138	17422315	5	5	1	1	1	1	17422226	5	0
LINE-L1__HAL1-2a_MD	chrY	17988511	17988715	5	5	1	1	1	1	17988613	5	0
LINE-L1__HAL1-2a_MD	chrY	17988734	17988901	5	5	1	1	1	1	17988817	5	0
LINE-L1__HAL1-2a_MD	chrY	18014658	18014825	5	5	1	1	1	1	18014741	5	0
LINE-L1__HAL1-2a_MD	chrY	18014844	18015051	5	5	1	1	1	1	18014947	5	0
LINE-L1__HAL1-2a_MD	chrY	18614815	18614995	5	5	1	1	1	1	18614905	5	0
LINE-L1__HAL1-2a_MD	chrY	18615002	18615153	5	5	1	1	1	1	18615077	5	0
LINE-L1__HAL1-2a_MD	chrY	19092029	19092196	5	5	1	1	1	1	19092112	5	0
LINE-L1__HAL1-2a_MD	chr19	5019072	5019621	5	5	1	1	1	1	5019346	5	0
LINE-L1__HAL1-2a_MD	chr19	5019777	5019948	5	5	1	1	1	1	5019862	5	0
LINE-L1__HAL1-2a_MD	chr19	5019988	5020168	5	5	1	1	1	1	5020078	5	0
LINE-L1__HAL1-2a_MD	chr19	5020143	5020308	5	5	1	1	1	1	5020225	5	0
LINE-L1__HAL1-2a_MD	chr19	6812792	6812946	5	5	1	1	1	1	6812869	5	0
LINE-L1__HAL1-2a_MD	chr19	6888990	6889161	5	5	1	1	1	1	6889075	5	0
LINE-L1__HAL1-2a_MD	chr19	6955254	6955432	5	5	1	1	1	1	6955343	5	0
LINE-L1__HAL1-2a_MD	chr19	7106673	7106872	5	5	1	1	1	1	7106772	5	0
LINE-L1__HAL1-2a_MD	chr19	7107078	7107250	5	5	1	1	1	1	7107164	5	0
LINE-L1__HAL1-2a_MD	chr19	7107484	7107678	5	5	1	1	1	1	7107581	5	0
LINE-L1__HAL1-2a_MD	chr19	7396462	7396650	5	5	1	1	1	1	7396556	5	0
LINE-L1__HAL1-2a_MD	chr19	7742713	7742861	5	5	1	1	1	1	7742787	5	0
LINE-L1__HAL1-2a_MD	chr19	7756346	7756496	5	5	1	1	1	1	7756421	5	0
LINE-L1__HAL1-2a_MD	chr19	7756760	7756978	5	5	1	1	1	1	7756869	5	0
LINE-L1__HAL1-2a_MD	chr19	7757003	7757183	5	5	1	1	1	1	7757093	5	0
LINE-L1__HAL1-2a_MD	chr19	7757202	7757410	5	5	1	1	1	1	7757306	5	0
LINE-L1__HAL1-2a_MD	chr19	7757693	7757874	5	5	1	1	1	1	7757783	5	0
LINE-L1__HAL1-2a_MD	chr19	8992305	8992454	5	5	1	1	1	1	8992379	5	0
LINE-L1__HAL1-2a_MD	chr19	8994791	8994984	5	5	1	1	1	1	8994887	5	0
LINE-L1__HAL1-2a_MD	chr19	8995230	8995403	5	5	1	1	1	1	8995316	5	0
LINE-L1__HAL1-2a_MD	chr19	8997825	8997986	5	5	1	1	1	1	8997905	5	0
LINE-L1__HAL1-2a_MD	chr19	8998220	8998395	5	5	1	1	1	1	8998307	5	0
LINE-L1__HAL1-2a_MD	chr19	9000814	9000972	5	5	1	1	1	1	9000893	5	0
LINE-L1__HAL1-2a_MD	chr19	9001031	9001228	5	5	1	1	1	1	9001129	5	0
LINE-L1__HAL1-2a_MD	chr19	9004145	9004321	5	5	1	1	1	1	9004233	5	0
LINE-L1__HAL1-2a_MD	chr19	9004340	9004504	5	5	1	1	1	1	9004422	5	0
LINE-L1__HAL1-2a_MD	chr19	9010047	9010224	5	5	1	1	1	1	9010135	5	0
LINE-L1__HAL1-2a_MD	chr19	9010237	9010396	5	5	1	1	1	1	9010316	5	0
LINE-L1__HAL1-2a_MD	chr19	9013181	9013351	5	5	1	1	1	1	9013266	5	0
LINE-L1__HAL1-2a_MD	chr19	9013417	9013583	5	5	1	1	1	1	9013500	5	0
LINE-L1__HAL1-2a_MD	chr19	9016021	9016190	5	5	1	1	1	1	9016105	5	0
LINE-L1__HAL1-2a_MD	chr19	9016191	9016373	5	5	1	1	1	1	9016282	5	0
LINE-L1__HAL1-2a_MD	chr19	9018832	9019034	5	5	1	1	1	1	9018933	5	0
LINE-L1__HAL1-2a_MD	chr19	9021456	9021639	5	5	1	1	1	1	9021547	5	0
LINE-L1__HAL1-2a_MD	chr19	9021768	9021961	5	5	1	1	1	1	9021864	5	0
LINE-L1__HAL1-2a_MD	chr19	9026626	9026814	5	5	1	1	1	1	9026720	5	0
LINE-L1__HAL1-2a_MD	chr19	9026826	9027006	5	5	1	1	1	1	9026916	5	0
LINE-L1__HAL1-2a_MD	chr19	14706453	14706593	5	5	1	1	1	1	14706523	5	0
LINE-L1__HAL1-2a_MD	chr19	14706647	14706849	5	5	1	1	1	1	14706748	5	0
LINE-L1__HAL1-2a_MD	chr19	28363397	28363557	5	5	1	1	1	1	28363477	5	0
LINE-L1__HAL1-2a_MD	chr19	30814969	30815139	5	5	1	1	1	1	30815054	5	0
LINE-L1__HAL1-2a_MD	chr19	30828832	30828992	5	5	1	1	1	1	30828912	5	0
LINE-L1__HAL1-2a_MD	chr19	30829026	30829200	5	5	1	1	1	1	30829113	5	0
LINE-L1__HAL1-2a_MD	chr19	30829235	30829412	5	5	1	1	1	1	30829323	5	0
LINE-L1__HAL1-2a_MD	chr19	30925639	30925690	5	5	1	1	1	1	30925664	5	0
LINE-L1__HAL1-2a_MD	chr19	30925871	30925995	5	5	1	1	1	1	30925933	5	0
LINE-L1__HAL1-2a_MD	chr19	30926199	30926374	5	5	1	1	1	1	30926286	5	0
LINE-L1__HAL1-2a_MD	chr19	30926377	30926541	5	5	1	1	1	1	30926459	5	0
LINE-L1__HAL1-2a_MD	chr19	31088803	31088946	5	5	1	1	1	1	31088874	5	0
LINE-L1__HAL1-2a_MD	chr19	31315768	31315859	5	5	1	1	1	1	31315813	5	0
LINE-L1__HAL1-2a_MD	chr19	31315866	31316049	5	5	1	1	1	1	31315957	5	0
LINE-L1__HAL1-2a_MD	chr19	35596463	35596632	5	5	1	1	1	1	35596547	5	0
LINE-L1__HAL1-2a_MD	chr19	35623455	35623634	5	5	1	1	1	1	35623544	5	0
LINE-L1__HAL1-2a_MD	chr19	35623795	35623937	5	5	1	1	1	1	35623866	5	0
LINE-L1__HAL1-2a_MD	chr19	35623959	35624128	5	5	1	1	1	1	35624043	5	0
LINE-L1__HAL1-2a_MD	chr19	42595108	42595285	5	5	1	1	1	1	42595196	5	0
LINE-L1__HAL1-2a_MD	chr19	48514274	48514444	5	5	1	1	1	1	48514359	5	0
LINE-L1__HAL1-2a_MD	chr19	48514700	48514877	5	5	1	1	1	1	48514788	5	0
LINE-L1__HAL1-2a_MD	chr19	49324861	49325040	5	5	1	1	1	1	49324950	5	0
LINE-L1__HAL1-2a_MD	chr19	49325041	49325205	5	5	1	1	1	1	49325123	5	0
LINE-L1__HAL1-2a_MD	chr19	49325698	49325850	5	5	1	1	1	1	49325774	5	0
LINE-L1__HAL1-2a_MD	chr19	49325847	49326014	5	5	1	1	1	1	49325930	5	0
LINE-L1__HAL1-2a_MD	chr19	49326020	49326200	5	5	1	1	1	1	49326110	5	0
LINE-L1__HAL1-2a_MD	chr19	51989327	51989507	5	5	1	1	1	1	51989417	5	0
LINE-L1__HAL1-2a_MD	chr19	54925257	54925440	5	5	1	1	1	1	54925348	5	0
LINE-L1__HAL1-2a_MD	chr19	54925441	54925608	5	5	1	1	1	1	54925524	5	0
LINE-L1__HAL1-2a_MD	chr19	55777827	55778001	5	5	1	1	1	1	55777914	5	0
LINE-L1__HAL1-2a_MD	chr19	56030542	56030703	5	5	1	1	1	1	56030622	5	0
LINE-L1__HAL1-2a_MD	chr19	58010699	58010894	5	5	1	1	1	1	58010796	5	0
LINE-L1__HAL1-2a_MD	chr22	23723236	23723410	5	5	1	1	1	1	23723323	5	0
LINE-L1__HAL1-2a_MD	chr22	26365897	26366102	5	5	1	1	1	1	26365999	5	0
LINE-L1__HAL1-2a_MD	chr22	26366071	26366211	5	5	1	1	1	1	26366141	5	0
LINE-L1__HAL1-2a_MD	chr22	27404637	27404803	5	5	1	1	1	1	27404720	5	0
LINE-L1__HAL1-2a_MD	chr22	27984898	27985062	5	5	1	1	1	1	27984980	5	0
LINE-L1__HAL1-2a_MD	chr22	28121496	28121634	5	5	1	1	1	1	28121565	5	0
LINE-L1__HAL1-2a_MD	chr22	35929467	35929571	5	5	1	1	1	1	35929519	5	0
LINE-L1__HAL1-2a_MD	chr22	37076023	37076161	5	5	1	1	1	1	37076092	5	0
LINE-L1__HAL1-2a_MD	chr22	37076379	37076562	5	5	1	1	1	1	37076470	5	0
LINE-L1__HAL1-2a_MD	chr22	37076651	37076821	5	5	1	1	1	1	37076736	5	0
LINE-L1__HAL1-2a_MD	chr22	37076805	37076986	5	5	1	1	1	1	37076895	5	0
LINE-L1__HAL1-2a_MD	chr22	38746873	38746946	5	5	1	1	1	1	38746909	5	0
LINE-L1__HAL1-2a_MD	chr22	39961571	39961771	5	5	1	1	1	1	39961671	5	0
LINE-L1__HAL1-2a_MD	chr22	39961921	39961992	5	5	1	1	1	1	39961956	5	0
LINE-L1__HAL1-2a_MD	chr22	39962173	39962269	5	5	1	1	1	1	39962221	5	0
LINE-L1__HAL1-2a_MD	chr22	43730530	43730688	5	5	1	1	1	1	43730609	5	0
LINE-L1__HAL1-2a_MD	chr22	43871289	43871425	5	5	1	1	1	1	43871357	5	0
LINE-L1__HAL1-2a_MD	chr22	43871670	43871849	5	5	1	1	1	1	43871759	5	0
LINE-L1__HAL1-2a_MD	chr22	43887152	43887338	5	5	1	1	1	1	43887245	5	0
LINE-L1__HAL1-2a_MD	chr22	43887460	43887788	5	5	1	1	1	1	43887624	5	0
LINE-L1__HAL1-2a_MD	chr22	43887800	43887965	5	5	1	1	1	1	43887882	5	0
LINE-L1__HAL1-2a_MD	chr22	43895840	43896023	5	5	1	1	1	1	43895931	5	0
LINE-L1__HAL1-2a_MD	chr22	43899993	43900194	5	5	1	1	1	1	43900093	5	0
LINE-L1__HAL1-2a_MD	chr22	43900439	43900544	5	5	1	1	1	1	43900491	5	0
LINE-L1__HAL1-2a_MD	chr22	43900550	43900709	5	5	1	1	1	1	43900629	5	0
LINE-L1__HAL1-2a_MD	chr22	43900717	43900894	5	5	1	1	1	1	43900805	5	0
LINE-L1__HAL1-2a_MD	chr22	44609483	44609557	5	5	1	1	1	1	44609520	5	0
LINE-L1__HAL1-2a_MD	chr22	44609561	44609740	5	5	1	1	1	1	44609650	5	0
LINE-L1__HAL1-2a_MD	chr22	44609754	44609932	5	5	1	1	1	1	44609843	5	0
LINE-L1__HAL1-2a_MD	chr22	45279998	45280156	5	5	1	1	1	1	45280077	5	0
LINE-L1__HAL1-2a_MD	chr22	45280163	45280331	5	5	1	1	1	1	45280247	5	0
LINE-L1__HAL1-2a_MD	chr22	45381649	45381966	5	5	1	1	1	1	45381807	5	0
LINE-L1__HAL1-2a_MD	chr22	45381969	45382141	5	5	1	1	1	1	45382055	5	0
LINE-L1__HAL1-2a_MD	chr22	45382142	45382300	5	5	1	1	1	1	45382221	5	0
LINE-L1__HAL1-2a_MD	chr22	46389093	46389278	5	5	1	1	1	1	46389185	5	0
LINE-L1__HAL1-2a_MD	chr22	46389595	46389775	5	5	1	1	1	1	46389685	5	0
LINE-L1__HAL1-2a_MD	chr22	46389867	46390102	5	5	1	1	1	1	46389984	5	0
LINE-L1__HAL1-2a_MD	chr22	47405130	47405234	5	5	1	1	1	1	47405182	5	0
LINE-L1__HAL1-2a_MD	chr22	47405457	47405634	5	5	1	1	1	1	47405545	5	0
LINE-L1__HAL1-2a_MD	chr22	47632527	47632701	5	5	1	1	1	1	47632614	5	0
LINE-L1__HAL1-2a_MD	chr22	47908416	47908434	5	5	1	1	1	1	47908425	5	0
LINE-L1__HAL1-2a_MD	chr22	47908613	47908754	5	5	1	1	1	1	47908683	5	0
LINE-L1__HAL1-2a_MD	chr22	48050283	48050469	5	5	1	1	1	1	48050376	5	0
LINE-L1__HAL1-2a_MD	chr22	48051666	48051812	5	5	1	1	1	1	48051739	5	0
LINE-L1__HAL1-2a_MD	chr22	48051813	48051977	5	5	1	1	1	1	48051895	5	0
LINE-L1__HAL1-2a_MD	chr22	48051987	48052134	5	5	1	1	1	1	48052060	5	0
LINE-L1__HAL1-2a_MD	chr22	48657163	48657343	5	5	1	1	1	1	48657253	5	0
LINE-L1__HAL1-2a_MD	chr22	48657344	48657477	5	5	1	1	1	1	48657410	5	0
LINE-L1__HAL1-2a_MD	chr22	49000809	49000979	5	5	1	1	1	1	49000894	5	0
LINE-L1__HAL1-2a_MD	chr22	49000982	49001155	5	5	1	1	1	1	49001068	5	0
LINE-L1__HAL1-2a_MD	chr22	49093129	49093315	5	5	1	1	1	1	49093222	5	0
LINE-L1__HAL1-2a_MD	chr22	49093401	49093569	5	5	1	1	1	1	49093485	5	0
LINE-L1__HAL1-2a_MD	chr22	49093851	49094025	5	5	1	1	1	1	49093938	5	0
LINE-L1__HAL1-2a_MD	chr22	49469702	49469883	5	5	1	1	1	1	49469792	5	0
LINE-L1__HAL1-2a_MD	chr22	49469884	49470060	5	5	1	1	1	1	49469972	5	0
LINE-L1__HAL1-2a_MD	chr22	49470064	49470243	5	5	1	1	1	1	49470153	5	0
LINE-L1__HAL1-2a_MD	chr22	49894272	49894470	5	5	1	1	1	1	49894371	5	0
LINE-L1__HAL1-2a_MD	chr22	49894533	49894729	5	5	1	1	1	1	49894631	5	0
LINE-L1__HAL1-2a_MD	chr22	49895009	49895127	5	5	1	1	1	1	49895068	5	0
LINE-L1__HAL1-2a_MD	chr22	49899165	49899328	5	5	1	1	1	1	49899246	5	0
LINE-L1__HAL1-2a_MD	chr22	49956261	49956449	5	5	1	1	1	1	49956355	5	0
LINE-L1__HAL1-2a_MD	chr22	49956477	49956615	5	5	1	1	1	1	49956546	5	0
LINE-L1__HAL1-2a_MD	chr22	49956630	49956804	5	5	1	1	1	1	49956717	5	0
LINE-L1__HAL1-2a_MD	chr22	49989535	49989707	5	5	1	1	1	1	49989621	5	0
LINE-L1__HAL1-2a_MD	chr22	49991051	49991221	5	5	1	1	1	1	49991136	5	0
LINE-L1__HAL1-2a_MD	chr21	28983908	28984052	5	5	1	1	1	1	28983980	5	0
LINE-L1__HAL1-2a_MD	chr21	33156963	33157145	5	5	1	1	1	1	33157054	5	0
LINE-L1__HAL1-2a_MD	chr21	35789899	35790072	5	5	1	1	1	1	35789985	5	0
LINE-L1__HAL1-2a_MD	chr21	39431889	39432068	5	5	1	1	1	1	39431978	5	0
LINE-L1__HAL1-2a_MD	chr21	41520653	41520800	5	5	1	1	1	1	41520726	5	0
LINE-L1__HAL1-2a_MD	chr21	41520876	41521396	5	5	1	1	1	1	41521136	5	0
LINE-L1__HAL1-2a_MD	chr21	41521382	41521544	5	5	1	1	1	1	41521463	5	0
LINE-L1__HAL1-2a_MD	chr21	41521606	41521910	5	5	1	1	1	1	41521758	5	0
LINE-L1__HAL1-2a_MD	chr21	43225912	43226091	5	5	1	1	1	1	43226001	5	0
LINE-L1__HAL1-2a_MD	chr21	43227332	43227472	5	5	1	1	1	1	43227402	5	0
LINE-L1__HAL1-2a_MD	chr21	44111061	44111212	5	5	1	1	1	1	44111136	5	0
LINE-L1__HAL1-2a_MD	chr21	44111520	44111988	5	5	1	1	1	1	44111754	5	0
LINE-L1__HAL1-2a_MD	chr21	45337855	45338037	5	5	1	1	1	1	45337946	5	0
LINE-L1__HAL1-2a_MD	chr21	45824483	45824648	5	5	1	1	1	1	45824565	5	0
LINE-L1__HAL1-2a_MD	chr21	45824705	45824878	5	5	1	1	1	1	45824791	5	0
LINE-L1__HAL1-2a_MD	chr21	45839392	45839591	5	5	1	1	1	1	45839491	5	0
LINE-L1__HAL1-2a_MD	chr21	45839592	45839759	5	5	1	1	1	1	45839675	5	0
LINE-L1__HAL1-2a_MD	chr21	45839762	45839917	5	5	1	1	1	1	45839839	5	0
LINE-L1__HAL1-2a_MD	chr21	46576096	46576270	5	5	1	1	1	1	46576183	5	0
LINE-L1__HAL1-2a_MD	chr21	46862783	46862948	5	5	1	1	1	1	46862865	5	0
LINE-L1__HAL1-2a_MD	chr21	47511238	47511399	5	5	1	1	1	1	47511318	5	0
LINE-L1__HAL1-2a_MD	chr17_ctg5_hap1	1031367	1031536	5	5	1	1	1	1	1031451	5	0
LINE-L1__HAL1-2a_MD	chrUn_gl000237	40570	40735	5	5	1	1	1	1	40652	5	0
LINE-L1__HAL1-2a_MD	chr21_gl000210_random	27297	27447	5	5	1	1	1	1	27372	5	0
LINE-L1__HAL1-2a_MD	chr21_gl000210_random	27469	27682	5	5	1	1	1	1	27575	5	0
LINE-L1__HAL1-2a_MD	chrUn_gl000239	22137	22302	5	5	1	1	1	1	22219	5	0