585 23 33 0 0 chr3RHet 971 1001 -2516506 + AT_rich Low_complexity Low_complexity 1 30 0 5 585 714 124 337 0 chr3RHet 1750 1952 -2515555 - DNAREP1_DM LINE Penelope 0 594 325 5 585 325 235 99 56 chr3RHet 2005 2167 -2515340 - MAX_LTR LTR Pao -61 260 92 5 585 677 171 151 0 chr3RHet 2314 2460 -2515047 - MAX_I LTR Pao -175 7739 7572 5 585 251 234 0 30 chr3RHet 2617 2683 -2514824 + G2_DM LINE Jockey 2625 2688 -414 5 585 3870 182 40 8 chr3RHet 2879 3611 -2513896 - MAX_I LTR Pao -5399 2515 1761 5 585 384 251 35 35 chr3RHet 3611 3784 -2513723 + Gypsy8_I LTR Gypsy 56 228 -4119 5 585 714 262 70 16 chr3RHet 4404 4660 -2512847 + OSVALDO_I LTR Gypsy 411 680 -5973 5 585 1012 131 160 14 chr3RHet 5066 5315 -2512192 + DNAREP1_DM LINE Penelope 67 331 -263 5 585 1192 191 43 63 chr3RHet 5315 5692 -2511815 + Gypsy8_LTR LTR Gypsy 1 304 0 5 585 320 145 143 14 chr3RHet 5670 5740 -2511767 + Gypsy8_I LTR Gypsy 1 79 -4268 5 585 2690 47 61 6 chr3RHet 6345 6690 -2510817 - Gypsy10_LTR LTR Gypsy 0 364 1 5 585 561 61 0 99 chr3RHet 6691 6782 -2510725 - Gypsy10_I LTR Gypsy -1 5277 5196 5 585 6259 137 96 51 chr3RHet 6901 8263 -2509244 - Gypsy10_I LTR Gypsy -232 6056 4148 5 585 421 133 111 0 chr3RHet 8252 8342 -2509165 - Gypsy10_I LTR Gypsy -1796 3482 3383 5 585 424 267 8 0 chr3RHet 8334 8454 -2509053 - Gypsy_I LTR Gypsy -2314 4193 4073 5 585 302 340 50 43 chr3RHet 10103 10663 -2506844 + Invader3_I LTR Gypsy 2927 3490 -1398 5 585 757 144 0 16 chr3RHet 11350 11477 -2506030 + PROTOP DNA P 9 133 -4347 5 585 1451 146 51 54 chr3RHet 11484 12027 -2505480 + PROTOP DNA P 3924 4112 -368 5 585 239 114 0 0 chr3RHet 12724 12759 -2504748 - DNAREP1_DM LINE Penelope -104 490 456 5 585 358 165 153 10 chr3RHet 12763 12861 -2504646 - DNAREP1_DM LINE Penelope -281 313 202 5 585 396 119 23 23 chr3RHet 12848 12934 -2504573 - DNAREP1_DM LINE Penelope -307 287 202 5 585 2699 87 26 10 chr3RHet 12931 13349 -2504158 - DM297_I LTR Gypsy -4000 2167 1743 5 585 8757 83 43 3 chr3RHet 13365 14696 -2502811 - DM297_I LTR Gypsy -4764 1403 20 5 585 1774 108 21 77 chr3RHet 14702 15042 -2502465 - DM297_LTR LTR Gypsy -18 396 76 5 585 352 123 51 76 chr3RHet 16843 16922 -2500585 - DM297_LTR LTR Gypsy -328 86 10 5 585 1203 104 51 19 chr3RHet 16936 17378 -2500129 + PROTOP DNA P 3938 4479 -1 5 585 29 0 0 0 chr3RHet 17996 18025 -2499482 + AT_rich Low_complexity Low_complexity 1 29 0 5 585 1299 108 59 3 chr3RHet 18067 18275 -2499232 - DNAREP1_DM LINE Penelope -104 490 284 5 585 2693 82 124 9 chr3RHet 18272 18717 -2498790 - DMCR1A LINE CR1 -2809 1661 1166 5 585 3332 81 110 23 chr3RHet 18729 19686 -2497821 - DMCR1A LINE CR1 -3424 1046 7 5 585 813 206 33 55 chr3RHet 19699 20024 -2497483 - DNAREP1_DM LINE Penelope -259 335 65 5 585 483 104 0 0 chr3RHet 20047 20114 -2497393 - Gypsy8_LTR LTR Gypsy -237 67 1 5 585 466 179 0 152 chr3RHet 20113 20258 -2497249 - Gypsy8_I LTR Gypsy 0 4347 4225 5 585 564 196 50 19 chr3RHet 20268 20517 -2496990 - Gypsy8_I LTR Gypsy -397 3950 3581 5 585 341 268 8 31 chr3RHet 20792 20919 -2496588 + (CGG)n Simple_repeat Simple_repeat 2 125 0 5 585 4198 115 101 37 chr3RHet 20919 21705 -2495802 - Gypsy8_I LTR Gypsy -1369 2978 2143 5 585 395 189 14 0 chr3RHet 21703 21805 -2495702 - Gypsy8_I LTR Gypsy -2453 1894 1836 5 585 2437 159 50 45 chr3RHet 21815 22329 -2495178 - Gypsy8_I LTR Gypsy -2851 1496 1034 5 585 582 303 52 9 chr3RHet 22454 22667 -2494840 - Gypsy8_I LTR Gypsy -5868 785 564 5 585 904 152 37 47 chr3RHet 23701 23915 -2493592 - Gypsy8_I LTR Gypsy -4135 212 1 5 585 1212 173 34 30 chr3RHet 23915 24275 -2493232 - Gypsy8_LTR LTR Gypsy 0 304 1 5 585 1023 126 160 10 chr3RHet 24275 24523 -2492984 - DNAREP1_DM LINE Penelope -263 331 67 5 585 18916 37 7 8 chr3RHet 25064 27310 -2490197 + G5_DM LINE Jockey 2601 4844 -12 5 585 5488 87 121 18 chr3RHet 27488 29119 -2488388 + DMCR1A LINE CR1 172 1969 -2501 5 585 2336 57 98 0 chr3RHet 29117 29433 -2488074 + DMCR1A LINE CR1 2262 2608 -1862 5 585 4618 63 66 27 chr3RHet 29442 30106 -2487401 + DMCR1A LINE CR1 2894 3583 -887 5 585 3937 103 21 0 chr3RHet 30095 30669 -2486838 + DMCR1A LINE CR1 3885 4470 0 5 585 22 35 0 0 chr3RHet 30941 30970 -2486537 + AT_rich Low_complexity Low_complexity 1 29 0 5 585 386 221 92 68 chr3RHet 31067 31348 -2486159 + Transib5 DNA Transib 15 302 -2699 5 585 2350 152 153 14 chr3RHet 32847 33697 -2483810 + DMCR1A LINE CR1 658 1625 -2845 5 585 345 24 0 23 chr3RHet 33691 33734 -2483773 + DMCR1A LINE CR1 2535 2576 -1894 5 585 1068 102 47 29 chr3RHet 33729 33901 -2483606 + DMCR1A LINE CR1 2992 3166 -1304 5 585 3180 57 5 0 chr3RHet 33887 34290 -2483217 - PROTOP_B DNA P -748 405 1 5 585 2594 82 20 11 chr3RHet 34290 34656 -2482851 + DMCR1A LINE CR1 3381 3857 -613 5 585 387 111 0 0 chr3RHet 34710 34764 -2482743 + Invader2_I LTR Gypsy 1887 1940 -2652 5 585 6911 65 98 2 chr3RHet 34792 36336 -2481171 - DM297_I LTR Gypsy -2296 3871 2179 5 585 11538 63 52 0 chr3RHet 36344 37813 -2479694 - BS3_DM LINE Jockey -244 1546 1 5 585 4755 157 27 6 chr3RHet 37935 39001 -2478506 - BS2 LINE Jockey -2408 2313 1175 5 585 530 165 0 0 chr3RHet 39015 39106 -2478401 - BS2 LINE Jockey -3680 1041 951 5 585 225 230 0 47 chr3RHet 39103 39167 -2478340 - G5_DM LINE Jockey -4389 467 407 5 585 1838 107 58 7 chr3RHet 39217 39508 -2477999 - BS2 LINE Jockey -4405 316 11 5 585 308 180 122 11 chr3RHet 39517 39607 -2477900 + Invader2_LTR LTR Gypsy 150 249 -17 5 585 337 96 39 0 chr3RHet 39593 39645 -2477862 + Invader2_I LTR Gypsy 1939 1992 -2600 5 585 280 103 0 0 chr3RHet 39644 39683 -2477824 - Invader2_I LTR Gypsy -1961 2631 2593 5 585 3340 105 52 0 chr3RHet 39678 40202 -2477305 + Invader2_I LTR Gypsy 2494 3044 -1548 5 585 631 195 0 63 chr3RHet 40613 40788 -2476719 - Gypsy8_I LTR Gypsy -4118 229 66 5 585 4290 100 84 6 chr3RHet 40860 41563 -2475944 + Invader2_I LTR Gypsy 3030 3787 -805 5 585 7285 44 37 3 chr3RHet 41565 42479 -2475028 + G3_DM LINE Jockey 1999 2943 -1662 5 585 1018 35 0 0 chr3RHet 42489 42605 -2474902 + G3_DM LINE Jockey 3394 3509 -1096 5 585 2838 43 46 0 chr3RHet 42615 42988 -2474519 + DOC5_DM LINE Jockey 1 390 -4292 5 585 2125 102 0 0 chr3RHet 42978 43283 -2474224 + Invader2_I LTR Gypsy 2708 3012 -1580 5 585 623 195 0 63 chr3RHet 43720 43895 -2473612 - Gypsy8_I LTR Gypsy -4118 229 66 5 585 4385 94 84 6 chr3RHet 43967 44670 -2472837 + Invader2_I LTR Gypsy 3030 3787 -805 5 585 7302 43 37 3 chr3RHet 44672 45586 -2471921 + G3_DM LINE Jockey 1999 2943 -1662 5 585 1018 35 0 0 chr3RHet 45596 45712 -2471795 + G3_DM LINE Jockey 3394 3509 -1096 5 585 2980 44 18 0 chr3RHet 45722 46105 -2471402 + DOC5_DM LINE Jockey 1 390 -4292 5 585 2108 105 0 0 chr3RHet 46095 46400 -2471107 + Invader2_I LTR Gypsy 2708 3012 -1580 5 585 43290 1 0 0 chr3RHet 46539 51231 -2466276 + FW_DM LINE Jockey 1 4692 0 5 585 641 189 0 63 chr3RHet 51559 51734 -2465773 - Gypsy8_I LTR Gypsy -4118 229 66 5 585 1860 90 61 0 chr3RHet 51806 52084 -2465423 + Invader2_I LTR Gypsy 3030 3324 -1268 5 585 20578 2 0 0 chr3RHet 53084 55344 -2462163 - TRANSPAC_I LTR Gypsy -2329 2261 1 5 585 3041 9 0 0 chr3RHet 55344 55674 -2461833 - TRANSPAC_LTR LTR Gypsy 0 330 1 5 585 12783 30 22 3 chr3RHet 55674 57185 -2460322 + DMCR1A LINE CR1 2931 4470 0 5 585 21 36 0 0 chr3RHet 57606 57634 -2459873 + AT_rich Low_complexity Low_complexity 1 28 0 5 585 241 288 18 18 chr3RHet 57804 57917 -2459590 + Gypsy6_I LTR Gypsy 4602 4714 -2298 5 585 24 0 0 0 chr3RHet 58336 58360 -2459147 + AT_rich Low_complexity Low_complexity 1 24 0 5 585 460 78 0 0 chr3RHet 58477 58541 -2458966 + DM1731_LTR LTR Copia 29 92 -244 5 585 2934 50 58 46 chr3RHet 58542 59031 -2458476 - DM176_LTR LTR Gypsy -26 481 1 5 585 53200 5 0 9 chr3RHet 59031 65506 -2452001 - DM176_I LTR Gypsy 0 6420 1 5 585 2906 47 63 47 chr3RHet 65506 65992 -2451515 - DM176_LTR LTR Gypsy -27 480 1 5 585 2060 58 4 4 chr3RHet 65992 66243 -2451264 + DM1731_LTR LTR Copia 86 336 0 5 585 32164 19 17 1 chr3RHet 66243 70157 -2447350 + DM1731_I LTR Copia 1 3976 0 5 585 2512 23 3 0 chr3RHet 70157 70464 -2447043 + DM1731_LTR LTR Copia 29 336 0 5 585 389 154 13 0 chr3RHet 71533 71611 -2445896 - Gypsy8_I LTR Gypsy -4268 79 1 5 585 569 207 172 62 chr3RHet 71611 71884 -2445623 - Gypsy8_LTR LTR Gypsy 0 304 2 5 585 21 0 0 0 chr3RHet 71990 72011 -2445496 + AT_rich Low_complexity Low_complexity 1 21 0 5 585 40088 4 0 4 chr3RHet 72352 77066 -2440441 + DOC LINE Jockey 32 4725 0 5 585 1591 25 0 29 chr3RHet 77163 77372 -2440135 - FROGGER_LTR LTR Copia 0 203 1 5 585 13713 22 32 13 chr3RHet 77372 79127 -2438380 - FROGGER_I LTR Copia 0 2077 289 5 585 979 284 60 27 chr3RHet 79309 79910 -2437597 - FROGGER_I LTR Copia -1796 281 129 5 585 5408 335 23 24 chr3RHet 82190 86331 -2431176 + GTWIN_I LTR Gypsy 1202 5318 -1694 5 585 24 0 0 0 chr3RHet 86466 86490 -2431017 + AT_rich Low_complexity Low_complexity 1 24 0 5 585 1124 22 0 0 chr3RHet 88304 88440 -2429067 - FROGGER_I LTR Copia -1941 136 1 5 585 1669 20 0 0 chr3RHet 88441 88643 -2428864 - FROGGER_LTR LTR Copia -1 202 1 5 585 36 23 0 0 chr3RHet 88773 88816 -2428691 + AT_rich Low_complexity Low_complexity 1 43 0 5 585 11412 98 3 1 chr3RHet 88999 90732 -2426775 + S_DM DNA Tc1 1 1736 0 5 585 945 208 123 3 chr3RHet 90740 91024 -2426483 - MINOS DNA Tc1 0 1775 1458 5 585 1129 159 92 0 chr3RHet 91028 91267 -2426240 - MINOS DNA Tc1 -611 1164 904 5 585 301 87 0 0 chr3RHet 91294 91340 -2426167 + DNAREP1_DM LINE Penelope 549 594 0 5 585 767 167 43 0 chr3RHet 91338 91500 -2426007 + DNAREP1_DM LINE Penelope 2 170 -424 5 585 736 170 103 47 chr3RHet 91493 91727 -2425780 + DNAREP1_DM LINE Penelope 86 332 -262 5 585 26 0 0 0 chr3RHet 91757 91783 -2425724 + AT_rich Low_complexity Low_complexity 1 26 0 5 585 1087 112 215 8 chr3RHet 91801 92043 -2425464 + DNAREP1_DM LINE Penelope 302 593 -1 5 585 1598 127 98 53 chr3RHet 92411 92768 -2424739 + STALKER4_LTR LTR Gypsy 1 373 -29 5 585 310 38 17 86 chr3RHet 92817 92875 -2424632 + STALKER4_I LTR Gypsy 13 66 -6464 5 585 3042 0 0 0 chr3RHet 92885 93231 -2424276 + Invader4_LTR LTR Gypsy 1 346 0 5 585 17456 14 18 3 chr3RHet 93231 95553 -2421954 + Invader4_I LTR Gypsy 1 2413 0 5 585 2974 9 0 0 chr3RHet 95553 95899 -2421608 + Invader4_LTR LTR Gypsy 1 346 0 5 585 289 174 235 0 chr3RHet 95899 95997 -2421510 + STALKER4_LTR LTR Gypsy 253 373 -29 5 585 8275 104 60 17 chr3RHet 96046 97434 -2420073 + STALKER4_I LTR Gypsy 13 1461 -5069 5 585 373 0 0 0 chr3RHet 97440 97484 -2420023 + PROTOP_B DNA P 1110 1153 0 5 585 22723 71 12 8 chr3RHet 97484 100749 -2416758 + STALKER4_I LTR Gypsy 2204 5481 -1049 5 585 8781 12 27 0 chr3RHet 100749 101825 -2415682 + PROTOP_A DNA P 1 1105 0 5 585 5460 101 48 34 chr3RHet 101825 102866 -2414641 + STALKER4_I LTR Gypsy 5475 6530 0 5 585 1388 108 41 70 chr3RHet 102866 103136 -2414371 + STALKER4_LTR LTR Gypsy 1 262 -140 5 585 5677 1 0 0 chr3RHet 103504 104162 -2413345 - QUASIMODO_LTR LTR Gypsy 0 658 1 5 585 263 302 16 16 chr3RHet 105313 105441 -2412066 - BLASTOPIA_I LTR Gypsy -746 3735 3608 5 585 271 290 44 25 chr3RHet 105841 106000 -2411507 - MDG3_I LTR Gypsy -1562 3424 3263 5 585 304 305 64 74 chr3RHet 106410 106831 -2410676 - BLASTOPIA_I LTR Gypsy -1885 2596 2180 5 585 6215 29 43 0 chr3RHet 108885 109680 -2407827 - DMRT1A LINE R1 -1853 3330 2502 5 585 7828 20 20 0 chr3RHet 109680 110636 -2406871 - DMRT1A LINE R1 -2936 2247 1273 5 585 952 25 0 0 chr3RHet 110632 110751 -2406756 - DMRT1A LINE R1 -4012 1171 1053 5 585 1498 0 0 6 chr3RHet 110749 110918 -2406589 - PROTOP DNA P -66 4414 4246 5 585 207 0 0 0 chr3RHet 110918 110941 -2406566 + (AAATG)n Simple_repeat Simple_repeat 4 26 0 5 585 1237 55 0 6 chr3RHet 110943 111125 -2406382 - PROTOP_A DNA P -275 830 650 5 585 7894 35 10 0 chr3RHet 111124 112088 -2405419 - PROTOP DNA P -3069 1411 438 5 585 5887 42 25 2 chr3RHet 112081 113287 -2404220 + DMCR1A LINE CR1 3194 4470 0 5 585 21 36 0 0 chr3RHet 113708 113736 -2403771 + AT_rich Low_complexity Low_complexity 1 28 0 5 585 281 304 24 24 chr3RHet 113848 114019 -2403488 + Gypsy6_I LTR Gypsy 4602 4714 -2298 5 585 24 0 0 0 chr3RHet 114438 114462 -2403045 + AT_rich Low_complexity Low_complexity 1 24 0 5 585 418 154 13 0 chr3RHet 115579 115657 -2401850 - Gypsy8_I LTR Gypsy -4268 79 1 5 585 676 207 172 62 chr3RHet 115657 115930 -2401577 - Gypsy8_LTR LTR Gypsy 0 304 2 5 585 12466 32 59 12 chr3RHet 115977 118430 -2399077 + DMCR1A LINE CR1 134 2701 -1769 5 585 1698 42 4 3 chr3RHet 118426 118677 -2398830 + DMCR1A LINE CR1 3705 3999 -471 5 585 706 272 40 28 chr3RHet 118678 118928 -2398579 + NINJA_I LTR Pao 3769 4021 -1990 5 585 2830 304 91 24 chr3RHet 118934 120539 -2396968 + NINJA_I LTR Pao 4299 6011 0 5 585 33 25 0 0 chr3RHet 120703 120743 -2396764 + AT_rich Low_complexity Low_complexity 1 40 0 5 585 24 67 0 0 chr3RHet 120952 120997 -2396510 + AT_rich Low_complexity Low_complexity 1 45 0 5 585 22 0 0 0 chr3RHet 123212 123234 -2394273 + AT_rich Low_complexity Low_complexity 1 22 0 5 585 31 0 0 0 chr3RHet 123538 123569 -2393938 + AT_rich Low_complexity Low_complexity 1 31 0 5 585 22 56 0 0 chr3RHet 124259 124295 -2393212 + AT_rich Low_complexity Low_complexity 1 36 0 5 585 3397 26 0 0 chr3RHet 124300 124683 -2392824 + DIVER2_LTR LTR Pao 3 385 0 5 585 19647 94 90 62 chr3RHet 124683 128190 -2389317 + DIVER2_I LTR Pao 1 3603 -544 5 585 1166 15 0 0 chr3RHet 128190 128325 -2389182 + DIVER2_I LTR Pao 4013 4147 0 5 585 2866 26 94 0 chr3RHet 128327 128677 -2388830 + DIVER2_LTR LTR Pao 3 385 0 5 585 3860 25 2 0 chr3RHet 128751 129198 -2388309 - FW_DM LINE Jockey 0 4692 4245 5 585 5966 30 1 4 chr3RHet 129191 129903 -2387604 - FW_DM LINE Jockey -1533 3159 2450 5 73 19418 17 1 0 chr3RHet 129902 132089 -2385418 - FW_DM LINE Jockey -2498 2194 5 5 586 291 324 9 0 chr3RHet 132105 132216 -2385291 + OSVALDO_I LTR Gypsy 2163 2274 -4379 5 586 313 115 19 0 chr3RHet 132605 132657 -2384850 - Transib5 DNA Transib -2846 155 103 5 586 10876 98 38 1 chr3RHet 133562 135119 -2382388 + S_DM DNA Tc1 1 1614 -122 5 586 2522 38 3 40 chr3RHet 135119 135448 -2382059 - NINJA_LTR LTR Pao 0 317 1 5 586 15038 31 2 3 chr3RHet 135448 137238 -2380269 - NINJA_I LTR Pao 0 6011 4223 5 586 6468 49 156 11 chr3RHet 137219 138185 -2379322 + MDG1_I LTR Gypsy 5489 6594 -2 5 586 459 103 0 143 chr3RHet 138608 138699 -2378808 + MDG1_I LTR Gypsy 1 78 -6518 5 586 2404 107 3 0 chr3RHet 138750 139103 -2378404 + MDG1_I LTR Gypsy 72 425 -6171 5 586 1890 14 0 18 chr3RHet 139103 139320 -2378187 - PROTOP DNA P -1 4479 4267 5 586 5295 42 60 32 chr3RHet 139324 140064 -2377443 - PROTOP_A DNA P -344 761 2 5 586 11559 36 24 1 chr3RHet 140077 141481 -2376026 - M4DM DNA Transib 0 1435 1 5 586 908 151 0 25 chr3RHet 141481 141644 -2375863 + MDG1_I LTR Gypsy 426 584 -6012 5 586 30 0 0 0 chr3RHet 141786 141816 -2375691 + AT_rich Low_complexity Low_complexity 1 30 0 5 586 24 53 0 0 chr3RHet 142409 142447 -2375060 + AT_rich Low_complexity Low_complexity 1 38 0 5 586 22 0 0 0 chr3RHet 143125 143147 -2374360 + AT_rich Low_complexity Low_complexity 1 22 0 5 586 346 333 17 11 chr3RHet 143203 143379 -2374128 + Gypsy12_I LTR Gypsy 2949 3125 -2421 5 586 3516 163 171 0 chr3RHet 143793 144515 -2372992 - DMCR1A LINE CR1 -2257 2213 1368 5 586 2183 8 0 0 chr3RHet 144622 144865 -2372642 + DIVER2_I LTR Pao 3905 4147 0 5 586 3226 37 11 0 chr3RHet 144867 145246 -2372261 + DIVER2_LTR LTR Pao 3 385 0 5 586 4570 142 199 14 chr3RHet 145316 146783 -2370724 - DMRT1B LINE R1 0 5183 3445 5 586 704 161 140 13 chr3RHet 146771 146928 -2370579 - DMRT1B LINE R1 -2165 3018 2842 5 586 1406 164 72 0 chr3RHet 146949 147199 -2370308 - DMRT1B LINE R1 -2612 2571 2304 5 586 1818 19 0 10 chr3RHet 147230 147439 -2370068 - DIVER2_I LTR Pao -656 3491 3285 5 586 16214 112 83 64 chr3RHet 147434 150518 -2366989 - DIVER2_I LTR Pao -1004 3143 1 5 586 2964 33 69 6 chr3RHet 150518 150880 -2366627 - DIVER2_LTR LTR Pao 0 385 1 5 586 234 0 0 0 chr3RHet 151836 151862 -2365645 + (T)n Simple_repeat Simple_repeat 1 26 0 5 586 937 159 90 62 chr3RHet 152144 152500 -2365007 - PROTOP_A DNA P -10 1095 745 5 586 534 220 247 6 chr3RHet 152498 152676 -2364831 - PROTOP DNA P -2938 1542 1322 5 586 843 216 147 8 chr3RHet 152992 153258 -2364249 - PROTOP DNA P -3442 1038 736 5 586 261 0 0 0 chr3RHet 153600 153629 -2363878 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 586 4296 8 8 45 chr3RHet 153631 154158 -2363349 - DM176_LTR LTR Gypsy 0 507 1 5 586 55981 6 11 3 chr3RHet 154158 160527 -2356980 - DM176_I LTR Gypsy 0 6420 1 5 586 4294 10 8 45 chr3RHet 160527 161054 -2356453 - DM176_LTR LTR Gypsy 0 507 1 5 586 365 169 0 0 chr3RHet 161078 161143 -2356364 + Gypsy_I LTR Gypsy 5473 5537 -970 5 586 1008 69 27 20 chr3RHet 161316 161463 -2356044 + M4DM DNA Transib 1 148 -1287 5 586 27 29 0 0 chr3RHet 161662 161696 -2355811 + AT_rich Low_complexity Low_complexity 1 34 0 5 586 904 211 68 65 chr3RHet 162490 162814 -2354693 - Gypsy_LTR LTR Gypsy -157 325 1 5 586 826 202 6 0 chr3RHet 162817 162980 -2354527 - Gypsy_I LTR Gypsy -3 6504 6341 5 586 5844 193 19 1 chr3RHet 162985 164048 -2353459 - Gypsy_I LTR Gypsy -276 6231 5150 5 586 9117 64 32 2 chr3RHet 164032 165214 -2352293 + BS2 LINE Jockey 3504 4721 0 5 586 24 0 0 0 chr3RHet 165214 165238 -2352269 + AT_rich Low_complexity Low_complexity 1 24 0 5 586 250 156 0 22 chr3RHet 166587 166633 -2350874 + MAX_I LTR Pao 577 621 -7293 5 586 269 271 9 36 chr3RHet 167204 167315 -2350192 + MAX_I LTR Pao 1628 1735 -6179 5 586 1897 179 0 0 chr3RHet 167321 167633 -2349874 + MAX_I LTR Pao 2933 3244 -4670 5 586 1513 146 201 0 chr3RHet 167633 167987 -2349520 + MAX_I LTR Pao 3347 3771 -4143 5 586 287 263 11 0 chr3RHet 168023 168118 -2349389 - STALKER4_LTR LTR Gypsy -27 375 280 5 586 429 257 21 0 chr3RHet 168180 168320 -2349187 - STALKER4_LTR LTR Gypsy -27 375 233 5 586 3510 7 7 7 chr3RHet 168332 168746 -2348761 + DM297_LTR LTR Gypsy 1 414 0 5 586 43742 6 0 0 chr3RHet 168746 173788 -2343719 + DM297_I LTR Gypsy 1 5043 -1124 5 586 4024 14 0 0 chr3RHet 173774 174268 -2343239 + DM297_I LTR Gypsy 5674 6167 0 5 586 3523 5 7 7 chr3RHet 174268 174682 -2342825 + DM297_LTR LTR Gypsy 1 414 0 5 586 21279 5 0 0 chr3RHet 174682 177140 -2340367 + DM297_I LTR Gypsy 1 2459 -3708 5 586 412 0 0 0 chr3RHet 177142 177189 -2340318 + DM297_LTR LTR Gypsy 368 414 0 5 586 1099 149 100 77 chr3RHet 177189 177439 -2340068 - STALKER4_LTR LTR Gypsy -146 256 1 5 586 30070 57 57 7 chr3RHet 177439 181618 -2335889 - STALKER4_I LTR Gypsy 0 6530 2142 5 586 587 201 118 6 chr3RHet 181618 181788 -2335719 - Stalker2_I LTR Gypsy -6937 465 277 5 586 462 250 21 0 chr3RHet 182029 182169 -2335338 - STALKER4_LTR LTR Gypsy -27 375 233 5 586 610 223 12 35 chr3RHet 182273 182445 -2335062 - Gypsy2_LTR LTR Gypsy -183 170 3 5 586 1244 154 25 4 chr3RHet 182456 182691 -2334816 - STALKER4_LTR LTR Gypsy -147 255 16 5 586 2150 22 159 0 chr3RHet 182739 183016 -2334491 + Baggins1 LINE LOA 1 321 -5132 5 586 17704 58 78 4 chr3RHet 183006 186725 -2330782 + Baggins1 LINE LOA 473 4514 -939 5 586 5479 59 39 12 chr3RHet 186725 187707 -2329800 + PROTOP_B DNA P 1 1028 -77 5 586 7606 49 10 4 chr3RHet 187713 188654 -2328853 + Baggins1 LINE LOA 4508 5453 0 5 586 18013 45 108 5 chr3RHet 188658 192045 -2325462 + IVK_DM LINE I 1 3793 -1609 5 586 7456 45 52 5 chr3RHet 192043 193356 -2324151 + IVK_DM LINE I 4027 5402 0 5 586 967 178 158 14 chr3RHet 193365 193587 -2323920 + MAX_I LTR Pao 3794 4047 -3867 5 586 1662 204 79 22 chr3RHet 193588 193954 -2323553 + MAX_I LTR Pao 4716 5102 -2812 5 586 22 35 0 0 chr3RHet 193959 193988 -2323519 + AT_rich Low_complexity Low_complexity 1 29 0 5 586 32 26 0 0 chr3RHet 194016 194055 -2323452 + AT_rich Low_complexity Low_complexity 1 39 0 5 586 23 0 0 0 chr3RHet 194911 194934 -2322573 + AT_rich Low_complexity Low_complexity 1 23 0 5 586 42 20 0 0 chr3RHet 196145 196194 -2321313 + AT_rich Low_complexity Low_complexity 1 49 0 5 586 654 243 28 28 chr3RHet 196194 196372 -2321135 - BS2 LINE Jockey -2180 2541 2364 5 586 226 206 31 31 chr3RHet 197143 197208 -2320299 - T412LTR LTR LTR -48 433 369 5 586 1974 116 7 16 chr3RHet 197212 197567 -2319940 - DM412 LTR Gypsy -250 321 1 5 586 14019 55 8 0 chr3RHet 197569 199378 -2318129 - DM412 LTR Gypsy -349 6548 4725 5 586 15326 62 102 0 chr3RHet 199376 201519 -2315988 - DM412 LTR Gypsy -2336 4561 2201 5 586 2399 7 0 0 chr3RHet 201513 201783 -2315724 + FW_DM LINE Jockey 1926 2195 -2497 5 586 18265 23 3 2 chr3RHet 201782 203923 -2313584 + FW_DM LINE Jockey 2549 4691 -1 5 586 4239 164 62 43 chr3RHet 203920 205008 -2312499 - DM412 LTR Gypsy -4681 2216 1108 5 586 3632 159 43 26 chr3RHet 205026 206004 -2311503 - DM412 LTR Gypsy -6068 829 1 5 586 4518 41 86 3 chr3RHet 207742 208514 -2308993 - DMCR1A LINE CR1 -74 4396 3561 5 586 311 258 32 51 chr3RHet 208806 208978 -2308529 + BLASTOPIA_I LTR Gypsy 3575 3909 -1077 5 586 22 0 0 0 chr3RHet 210250 210272 -2307235 + AT_rich Low_complexity Low_complexity 1 22 0 5 586 701 198 203 48 chr3RHet 210325 210532 -2306975 + MAX_I LTR Pao 2317 2555 -5359 5 586 863 188 53 0 chr3RHet 210509 210679 -2306828 + MAX_I LTR Pao 2933 3111 -4803 5 586 4319 160 201 7 chr3RHet 210684 211958 -2305549 + MAX_I LTR Pao 3598 5170 -2744 5 586 2002 195 246 3 chr3RHet 211985 212562 -2304945 + MAX_I LTR Pao 6973 7689 -225 5 586 1586 73 5 5 chr3RHet 212884 213105 -2304402 - DMTOM1_LTR LTR Gypsy 0 410 190 5 586 47 0 0 0 chr3RHet 213522 213569 -2303938 + AT_rich Low_complexity Low_complexity 1 47 0 5 586 371 321 58 46 chr3RHet 214564 214886 -2302621 + Gypsy3_I LTR Gypsy 1218 1556 -4579 5 586 785 340 52 48 chr3RHet 216377 216815 -2300692 + Gypsy4_I LTR Gypsy 2320 2812 -3609 5 586 1601 23 19 0 chr3RHet 216815 217029 -2300478 + TLD2 Unknown Unknown 1 218 0 5 586 785 340 52 48 chr3RHet 217029 217671 -2299836 + Gypsy4_I LTR Gypsy 2813 3538 -2883 5 586 243 212 29 29 chr3RHet 218025 218093 -2299414 + Gypsy4_I LTR Gypsy 4324 4391 -1897 5 586 24 96 0 0 chr3RHet 219692 219765 -2297742 + AT_rich Low_complexity Low_complexity 1 73 0 5 586 3188 43 10 0 chr3RHet 219860 220254 -2297253 + S2_DM DNA Tc1 549 946 -789 5 586 620 113 562 13 chr3RHet 220265 220484 -2297023 - IDEFIX_LTR LTR Gypsy -253 341 2 5 586 10047 144 52 10 chr3RHet 220494 222362 -2295145 - IDEFIX_I LTR Gypsy -453 5175 3229 5 586 8240 98 35 2 chr3RHet 222363 223524 -2293983 - IDEFIX_I LTR Gypsy -2792 2836 1637 5 586 329 175 0 0 chr3RHet 223545 223602 -2293905 - IDEFIX_I LTR Gypsy -4461 1167 1111 5 586 3937 191 25 56 chr3RHet 223600 224455 -2293052 - IDEFIX_I LTR Gypsy -4800 828 1 5 586 3135 42 66 7 chr3RHet 224563 225157 -2292350 + TRANSIB1 DNA Transib 1 629 -2385 5 586 1935 62 68 18 chr3RHet 225142 225169 -2292338 + TRANSIB1 DNA Transib 2720 2746 -268 5 586 180 0 0 0 chr3RHet 225169 225189 -2292318 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 5 586 1935 62 68 18 chr3RHet 225189 225442 -2292065 + TRANSIB1 DNA Transib 2747 3012 -2 5 586 3787 97 15 51 chr3RHet 225830 226441 -2291066 - IDEFIX_LTR LTR Gypsy 0 594 6 5 586 262 133 0 22 chr3RHet 226511 226557 -2290950 + MAX_I LTR Pao 577 621 -7293 5 586 37 39 0 0 chr3RHet 227042 227093 -2290414 + AT_rich Low_complexity Low_complexity 1 51 0 5 586 46 72 0 23 chr3RHet 227491 227619 -2289888 + AT_rich Low_complexity Low_complexity 1 125 0 5 586 22 70 0 0 chr3RHet 227968 228011 -2289496 + AT_rich Low_complexity Low_complexity 1 43 0 5 586 384 250 67 58 chr3RHet 228108 228390 -2289117 + MAX_I LTR Pao 1353 1754 -6160 5 586 1970 177 0 0 chr3RHet 228426 228742 -2288765 + MAX_I LTR Pao 2933 3248 -4666 5 586 2617 142 50 15 chr3RHet 228775 229233 -2288274 + MAX_I LTR Pao 3349 3822 -4092 5 586 1512 219 23 0 chr3RHet 229241 229547 -2287960 + MAX_I LTR Pao 4561 4873 -3041 5 586 610 191 449 6 chr3RHet 229553 229731 -2287776 + MAX_I LTR Pao 5297 5553 -2361 5 586 639 158 430 17 chr3RHet 229746 229925 -2287582 + MAX_I LTR Pao 5713 5965 -1949 5 586 2542 100 112 140 chr3RHet 229942 230548 -2286959 + DNAREP1_DM LINE Penelope 6 594 0 5 586 3437 175 86 12 chr3RHet 230546 231207 -2286300 + MAX_I LTR Pao 5997 6706 -1208 5 586 28 48 0 0 chr3RHet 231300 231342 -2286165 + AT_rich Low_complexity Low_complexity 1 42 0 5 586 2822 76 29 60 chr3RHet 231736 232183 -2285324 + DMCR1A LINE CR1 7 439 -4031 5 586 14500 54 32 0 chr3RHet 232180 234007 -2283500 + DMRT1A LINE R1 1622 3507 -1676 5 586 10715 56 6 6 chr3RHet 234002 235345 -2282162 + DMRT1A LINE R1 3830 5172 -11 5 586 11657 36 31 7 chr3RHet 235338 236750 -2280757 + DMCR1A LINE CR1 427 1872 -2598 5 586 1528 98 244 0 chr3RHet 236761 237003 -2280504 + DMCR1A LINE CR1 3220 3520 -950 5 586 2737 48 139 2 chr3RHet 236996 237506 -2280001 + DMCR1A LINE CR1 3655 4234 -236 5 586 825 88 18 0 chr3RHet 237508 237622 -2279885 + DMCR1A LINE CR1 4353 4468 -2 5 586 15759 30 63 16 chr3RHet 237625 239926 -2277581 - Transib5 DNA Transib -591 2410 1 5 586 5331 64 30 7 chr3RHet 239926 240633 -2276874 + DMCR1A LINE CR1 3748 4470 0 5 586 21 0 0 0 chr3RHet 241236 241257 -2276250 + AT_rich Low_complexity Low_complexity 1 21 0 5 586 404 173 53 0 chr3RHet 241954 242029 -2275478 + DNAREP1_DM LINE Penelope 1 79 -515 5 586 22 0 0 0 chr3RHet 242029 242051 -2275456 + AT_rich Low_complexity Low_complexity 1 22 0 5 586 538 148 198 9 chr3RHet 242159 242371 -2275136 + DNAREP1_DM LINE Penelope 340 591 -3 5 586 21 0 0 0 chr3RHet 242783 242804 -2274703 + AT_rich Low_complexity Low_complexity 1 21 0 5 586 25 65 0 0 chr3RHet 242856 242902 -2274605 + AT_rich Low_complexity Low_complexity 1 46 0 5 586 1183 223 174 47 chr3RHet 242995 243492 -2274015 - DNAREP1_DM LINE Penelope -25 569 10 5 586 1182 189 97 60 chr3RHet 243613 243995 -2273512 - Gypsy_LTR LTR Gypsy -86 396 1 5 586 9627 170 127 5 chr3RHet 243996 246338 -2271169 - Gypsy_I LTR Gypsy -2 6419 3719 5 586 21 0 0 0 chr3RHet 246671 246692 -2270815 + AT_rich Low_complexity Low_complexity 1 21 0 5 586 25 65 0 0 chr3RHet 246744 246790 -2270717 + AT_rich Low_complexity Low_complexity 1 46 0 5 586 1183 223 174 47 chr3RHet 246883 247380 -2270127 - DNAREP1_DM LINE Penelope -25 569 10 5 586 1365 202 37 57 chr3RHet 247501 247905 -2269602 - Gypsy_LTR LTR Gypsy -86 396 1 5 586 9627 177 95 5 chr3RHet 247906 250248 -2267259 - Gypsy_I LTR Gypsy -2 6419 3719 5 586 21 0 0 0 chr3RHet 250581 250602 -2266905 + AT_rich Low_complexity Low_complexity 1 21 0 5 586 25 65 0 0 chr3RHet 250654 250700 -2266807 + AT_rich Low_complexity Low_complexity 1 46 0 5 586 1183 223 174 47 chr3RHet 250793 251290 -2266217 - DNAREP1_DM LINE Penelope -25 569 10 5 586 1182 189 97 60 chr3RHet 251411 251793 -2265714 - Gypsy_LTR LTR Gypsy -86 396 1 5 586 837 201 6 0 chr3RHet 251794 251958 -2265549 - Gypsy_I LTR Gypsy -2 6505 6341 5 586 2111 214 50 6 chr3RHet 251963 252443 -2265064 - Gypsy_I LTR Gypsy -276 6231 5731 5 586 9627 161 55 6 chr3RHet 252441 254199 -2263308 - Gypsy_I LTR Gypsy -1553 5969 3936 5 586 727 336 41 26 chr3RHet 254634 255099 -2262408 - NOMAD_I LTR Gypsy 0 6572 6101 5 586 310 235 0 0 chr3RHet 255743 255811 -2261696 - NOMAD_I LTR Gypsy -561 6011 5944 5 586 336 240 0 0 chr3RHet 256286 256361 -2261146 - NOMAD_I LTR Gypsy -1017 5555 5481 5 586 5143 308 23 15 chr3RHet 256381 258133 -2259374 - NOMAD_I LTR Gypsy -1342 5230 3465 5 586 237 229 0 0 chr3RHet 258171 258219 -2259288 - NOMAD_I LTR Gypsy -3330 3242 3195 5 586 543 351 27 24 chr3RHet 258235 258609 -2258898 - NOMAD_I LTR Gypsy -97 6475 6101 5 586 310 235 0 0 chr3RHet 259253 259321 -2258186 - NOMAD_I LTR Gypsy -561 6011 5944 5 586 336 240 0 0 chr3RHet 259796 259871 -2257636 - NOMAD_I LTR Gypsy -1017 5555 5481 5 586 5143 308 23 15 chr3RHet 259891 261643 -2255864 - NOMAD_I LTR Gypsy -1342 5230 3465 5 73 4169 320 59 51 chr3RHet 261681 264357 -2253150 - NOMAD_I LTR Gypsy -3330 3242 547 5 587 1334 97 0 6 chr3RHet 264844 265021 -2252486 + G5_DM LINE Jockey 6 181 -4675 5 587 11258 45 58 0 chr3RHet 265012 266402 -2251105 + G5_DM LINE Jockey 398 1868 -2988 5 587 2974 31 58 0 chr3RHet 266401 266919 -2250588 + G5_DM LINE Jockey 3363 3910 -946 5 587 4500 33 36 20 chr3RHet 266917 267468 -2250039 + G5_DM LINE Jockey 4095 4654 -202 5 587 6821 22 0 0 chr3RHet 267468 268253 -2249254 + PROTOP_A DNA P 1 785 -320 5 587 210 193 0 0 chr3RHet 268419 268476 -2249031 + T-rich Low_complexity Low_complexity 1 57 0 5 587 698 208 34 14 chr3RHet 268504 268650 -2248857 - NOMAD_I LTR Gypsy -5877 695 547 5 587 1334 97 0 6 chr3RHet 269127 269304 -2248203 + G5_DM LINE Jockey 6 181 -4675 5 587 3164 67 0 0 chr3RHet 269295 269686 -2247821 + G5_DM LINE Jockey 398 788 -4068 5 587 1119 187 115 59 chr3RHet 269737 270112 -2247395 - Gypsy_LTR LTR Gypsy -86 396 1 5 587 1703 282 108 37 chr3RHet 270510 271436 -2246071 + Invader4_I LTR Gypsy 202 1199 -1987 5 587 1381 161 2 3 chr3RHet 271577 271868 -2245639 - DOC4_DM LINE Jockey -756 2035 1870 5 587 232 252 50 20 chr3RHet 271900 272001 -2245506 - MAX_I LTR Pao -7500 414 311 5 587 331 173 38 51 chr3RHet 272097 272176 -2245331 - MAX_LTR LTR Pao -131 190 113 5 587 1300 177 115 0 chr3RHet 272201 272461 -2245046 - MAX_I LTR Pao -239 7675 7386 5 587 5189 43 65 13 chr3RHet 272822 273498 -2244009 + DOC4_DM LINE Jockey 2081 2791 0 5 587 5405 82 173 6 chr3RHet 273547 274469 -2243038 - DMCR1A LINE CR1 -177 4293 3183 5 587 977 42 0 0 chr3RHet 274469 274587 -2242920 - DMCR1A LINE CR1 -1389 3081 2964 5 587 11781 64 52 11 chr3RHet 274581 276166 -2241341 - DMCR1A LINE CR1 -1633 2837 1188 5 587 600 114 28 9 chr3RHet 276153 276259 -2241248 - Gypsy9_LTR LTR Gypsy -14 322 215 5 587 913 37 0 0 chr3RHet 276256 276363 -2241144 - Gypsy9_I LTR Gypsy -6 4671 4565 5 587 3407 33 33 0 chr3RHet 276382 276801 -2240706 - Transib5 DNA Transib 0 3001 2569 5 587 1425 46 0 0 chr3RHet 276824 276998 -2240509 - Transib5 DNA Transib -2827 174 1 5 587 8786 59 53 14 chr3RHet 277008 278210 -2239297 - Gypsy9_I LTR Gypsy -185 4492 3244 5 587 6967 217 113 94 chr3RHet 278244 282071 -2235436 - Gypsy9_I LTR Gypsy -1536 4752 164 5 587 2467 64 57 20 chr3RHet 282065 282416 -2235091 - DMCR1A LINE CR1 -3400 1070 707 5 587 694 323 11 12 chr3RHet 282419 282705 -2234802 + Invader1_I LTR Gypsy 1606 1862 -1324 5 587 11878 97 6 1 chr3RHet 282723 284451 -2233056 - S_DM DNA Tc1 0 1736 1 5 587 3762 12 2 0 chr3RHet 284453 284875 -2232632 + Invader1_LTR LTR Gypsy 1 423 0 5 587 1971 25 8 43 chr3RHet 284899 285154 -2232353 - Gypsy4_LTR LTR Gypsy -41 246 1 5 587 14053 13 25 1 chr3RHet 285154 286781 -2230726 - Gypsy4_I LTR Gypsy 0 6288 4624 5 587 37156 16 17 3 chr3RHet 286780 291077 -2226430 - Gypsy4_I LTR Gypsy -1929 4359 1 5 587 2250 39 7 37 chr3RHet 291077 291373 -2226134 - Gypsy4_LTR LTR Gypsy 0 287 1 5 587 907 304 46 6 chr3RHet 291392 291743 -2225764 + Invader1_I LTR Gypsy 1900 2264 -922 5 587 1408 64 357 6 chr3RHet 292085 292423 -2225084 - TRANSIB3 DNA Transib 0 2883 2426 5 587 6968 60 24 8 chr3RHet 292407 293358 -2224149 - TRANSIB3 DNA Transib -1917 966 1 5 587 923 176 91 0 chr3RHet 293379 293566 -2223941 + MDG1_I LTR Gypsy 4002 4205 -2391 5 587 1986 236 146 27 chr3RHet 293566 294388 -2223119 + DM412 LTR Gypsy 4688 5607 -1290 5 587 687 136 122 0 chr3RHet 294597 294744 -2222763 + Stalker2_I LTR Gypsy 5763 5927 -1475 5 587 967 220 234 14 chr3RHet 294750 295234 -2222273 + DM412 LTR Gypsy 5701 6590 -307 5 587 199 179 15 15 chr3RHet 295280 295348 -2222159 + (TAAA)n Simple_repeat Simple_repeat 3 70 0 5 587 2888 47 239 5 chr3RHet 295368 296106 -2221401 + PROTOP_B DNA P 243 1153 0 5 587 579 238 185 16 chr3RHet 296454 296638 -2220869 - Gypsy8_I LTR Gypsy -3404 943 729 5 587 1014 139 58 0 chr3RHet 296638 296811 -2220696 - Gypsy8_I LTR Gypsy -3786 561 379 5 587 759 194 0 0 chr3RHet 297266 297400 -2220107 - Gypsy8_I LTR Gypsy -3984 363 230 5 587 447 327 104 11 chr3RHet 297595 297873 -2219634 - OSVALDO_I LTR Gypsy -5915 738 435 5 587 385 222 172 7 chr3RHet 298803 298948 -2218559 - DNAREP1_DM LINE Penelope -294 300 132 5 587 291 206 29 14 chr3RHet 298964 299033 -2218474 - DNAREP1_DM LINE Penelope -514 80 11 5 587 22 80 0 0 chr3RHet 299543 299593 -2217914 + AT_rich Low_complexity Low_complexity 1 50 0 5 587 1921 101 210 0 chr3RHet 299996 300334 -2217173 + DNAREP1_DM LINE Penelope 160 568 -26 5 587 1638 140 89 42 chr3RHet 300333 300736 -2216771 - DNAREP1_DM LINE Penelope -172 422 1 5 587 250 321 48 0 chr3RHet 301954 302038 -2215469 - G5A_DM LINE Jockey -853 1988 1901 5 587 226 326 87 46 chr3RHet 302151 302347 -2215160 - G2_DM LINE Jockey -1069 2033 1830 5 587 802 129 109 23 chr3RHet 303014 303188 -2214319 + DMRT1C LINE R1 5253 5441 -2 5 587 47 0 0 0 chr3RHet 303655 303702 -2213805 + AT_rich Low_complexity Low_complexity 1 47 0 5 587 363 307 78 62 chr3RHet 304615 305062 -2212445 + Gypsy3_I LTR Gypsy 708 1449 -4728 5 587 894 337 63 44 chr3RHet 306415 306871 -2210636 + BURDOCK_I LTR Gypsy 2255 2798 -3062 5 587 1078 43 164 21 chr3RHet 306871 307060 -2210447 + TLD2 Unknown Unknown 1 216 -2 5 587 894 337 63 44 chr3RHet 307060 307699 -2209808 + BURDOCK_I LTR Gypsy 2799 3562 -2298 5 587 249 310 43 43 chr3RHet 308214 308376 -2209131 + GTWIN_I LTR Gypsy 4123 4284 -2137 5 587 259 159 73 73 chr3RHet 308554 308622 -2208885 + Gypsy4_I LTR Gypsy 4324 4391 -1897 5 587 46 0 0 0 chr3RHet 310867 310913 -2206594 + AT_rich Low_complexity Low_complexity 1 46 0 5 587 3217 128 18 18 chr3RHet 310947 311498 -2206009 + DOC LINE Jockey 4147 4697 -28 5 587 434 37 0 0 chr3RHet 311516 311570 -2205937 - DNAREP1_DM LINE Penelope -360 234 181 5 587 321 75 0 0 chr3RHet 311619 311659 -2205848 + DNAREP1_DM LINE Penelope 445 484 -110 5 587 9638 48 39 11 chr3RHet 311662 312918 -2204589 + DMCR1A LINE CR1 1547 2837 -1633 5 587 952 42 0 0 chr3RHet 312912 313030 -2204477 + DMCR1A LINE CR1 2964 3081 -1389 5 587 8135 65 75 7 chr3RHet 313030 314204 -2203303 + DMCR1A LINE CR1 3183 4470 0 5 587 343 57 0 70 chr3RHet 314210 314267 -2203240 + DNAREP1_DM LINE Penelope 508 560 -34 5 587 32 43 0 0 chr3RHet 314286 314332 -2203175 + AT_rich Low_complexity Low_complexity 1 46 0 5 587 336 366 12 4 chr3RHet 314856 315100 -2202407 - BURDOCK_I LTR Gypsy -4878 982 737 5 587 29 28 0 0 chr3RHet 316042 316078 -2201429 + AT_rich Low_complexity Low_complexity 1 36 0 5 587 5454 334 22 22 chr3RHet 368308 372455 -2145052 + GTWIN_I LTR Gypsy 1202 5318 -1694 5 587 3186 132 18 0 chr3RHet 373613 374127 -2143380 + IDEFIX_I LTR Gypsy 1971 2493 -3135 5 587 8919 116 96 6 chr3RHet 374146 376908 -2140599 + IDEFIX_I LTR Gypsy 2616 5626 -2 5 587 1402 121 107 13 chr3RHet 376907 377217 -2140290 + IDEFIX_LTR LTR Gypsy 3 341 -253 5 587 6918 52 11 12 chr3RHet 377218 378186 -2139321 - S2_DM DNA Tc1 -767 968 2 5 587 387 81 16 0 chr3RHet 378186 378245 -2139262 + BARI1 DNA Tc1 36 95 -1655 5 587 260 149 0 0 chr3RHet 378245 378292 -2139215 + BARI1 DNA Tc1 1637 1683 -67 5 587 3157 42 0 0 chr3RHet 378289 378693 -2138814 + DMTOM1_LTR LTR Gypsy 7 410 0 5 587 1710 199 252 4 chr3RHet 378996 379560 -2137947 - MAX_I LTR Pao -238 7676 6973 5 587 2373 164 162 5 chr3RHet 379577 380877 -2136630 - MAX_I LTR Pao -2713 5201 3601 5 587 873 165 53 0 chr3RHet 380877 381047 -2136460 - MAX_I LTR Pao -4803 3111 2933 5 587 515 207 202 49 chr3RHet 381021 381224 -2136283 - MAX_I LTR Pao -5356 2558 2325 5 587 24 0 0 0 chr3RHet 381241 381265 -2136242 + AT_rich Low_complexity Low_complexity 1 24 0 5 587 231 156 0 22 chr3RHet 382034 382080 -2135427 - MAX_I LTR Pao -7293 621 577 5 587 248 0 31 0 chr3RHet 383130 383162 -2134345 + (CAATG)n Simple_repeat Simple_repeat 2 34 0 5 587 830 165 11 5 chr3RHet 383385 383574 -2133933 + DNAREP1_DM LINE Penelope 118 307 -287 5 587 1106 132 16 10 chr3RHet 383573 383774 -2133733 + DNAREP1_DM LINE Penelope 111 441 -153 5 587 7238 179 23 5 chr3RHet 383812 385242 -2132265 + IDEFIX_I LTR Gypsy 32 1487 -4141 5 587 2238 97 18 3 chr3RHet 385244 385567 -2131940 + IDEFIX_I LTR Gypsy 1726 2053 -3575 5 587 939 9 0 0 chr3RHet 385567 385675 -2131832 - PROTOP_A DNA P 0 1105 998 5 587 2574 3 0 0 chr3RHet 385674 385979 -2131528 - G2_DM LINE Jockey -4 3098 2794 5 587 8028 24 0 7 chr3RHet 385970 386981 -2130526 - PROTOP_A DNA P -101 1004 1 5 587 2744 129 20 0 chr3RHet 386981 387422 -2130085 + IDEFIX_I LTR Gypsy 2044 2493 -3135 5 587 750 97 0 26 chr3RHet 387441 387558 -2129949 + IDEFIX_I LTR Gypsy 2616 2729 -2899 5 587 3427 5 0 2 chr3RHet 387558 387961 -2129546 + STALKER4_LTR LTR Gypsy 1 402 0 5 587 300 25 0 24 chr3RHet 387961 387989 -2129518 + STALKER4_I LTR Gypsy 1 27 -6503 5 587 289 96 0 37 chr3RHet 387989 388043 -2129464 + STALKER4_I LTR Gypsy 1 52 -7350 5 587 23929 36 20 10 chr3RHet 388256 391536 -2125971 + STALKER4_I LTR Gypsy 242 3620 -2910 5 73 14680 21 7 4 chr3RHet 391519 393355 -2124152 + STALKER4_I LTR Gypsy 4658 7402 0 5 588 3578 5 0 2 chr3RHet 393355 393758 -2123749 + STALKER4_LTR LTR Gypsy 1 402 0 5 588 2014 151 0 9 chr3RHet 393782 394130 -2123377 + IDEFIX_I LTR Gypsy 2722 3066 -2562 5 588 2126 134 33 44 chr3RHet 394133 394561 -2122946 + Stalker2_LTR LTR Gypsy 1 423 -1 5 588 248 103 26 0 chr3RHet 394552 394578 -2122929 + STALKER4_I LTR Gypsy 1 27 -6503 5 588 306 105 0 50 chr3RHet 394578 394638 -2122869 + Stalker2_I LTR Gypsy 1 57 -7345 5 588 2596 146 47 8 chr3RHet 394838 395429 -2122078 + Stalker2_I LTR Gypsy 242 908 -5622 5 588 562 303 18 18 chr3RHet 396241 396520 -2120987 + BLOOD_I LTR Gypsy 1984 2262 -4351 5 588 3263 3 0 0 chr3RHet 396521 396888 -2120619 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 588 55004 4 0 1 chr3RHet 396888 403624 -2113883 + ROVER-I_DM LTR Gypsy 1 6584 0 5 588 3291 0 0 0 chr3RHet 403624 403991 -2113516 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 588 11199 263 40 15 chr3RHet 403996 407960 -2109547 + TABOR_I LTR Gypsy 2162 6224 -372 5 588 44 63 0 0 chr3RHet 408192 408271 -2109236 + AT_rich Low_complexity Low_complexity 1 79 0 5 588 192 167 0 0 chr3RHet 408272 408320 -2109187 + A-rich Low_complexity Low_complexity 1 48 0 5 588 351 0 0 0 chr3RHet 408326 408366 -2109141 + STALKER4_I LTR Gypsy 6491 6530 0 5 588 2075 121 66 36 chr3RHet 408366 408777 -2108730 + Stalker2_LTR LTR Gypsy 1 423 -1 5 588 6716 112 118 1 chr3RHet 408788 410583 -2106924 + IDEFIX_I LTR Gypsy 3060 5065 -563 5 588 526 138 11 0 chr3RHet 410599 410693 -2106814 + IDEFIX_I LTR Gypsy 5392 5486 -142 5 588 275 153 14 0 chr3RHet 410679 410751 -2106756 + IDEFIX_LTR LTR Gypsy 522 594 0 5 588 2945 63 0 8 chr3RHet 411130 411612 -2105895 + DMRT1C LINE R1 3850 4365 -1078 5 588 1813 78 12 0 chr3RHet 411610 411854 -2105653 + DMRT1C LINE R1 5196 5442 -1 5 588 715 214 126 93 chr3RHet 411879 412235 -2105272 + HOBO DNA hAT 2523 2890 -126 5 588 383 179 95 24 chr3RHet 412285 412411 -2105096 + DM297_LTR LTR Gypsy 280 414 0 5 588 28 48 0 0 chr3RHet 412600 412642 -2104865 + AT_rich Low_complexity Low_complexity 1 42 0 5 588 647 313 54 14 chr3RHet 413243 413538 -2103969 + OSVALDO_I LTR Gypsy 415 721 -5932 5 588 13203 67 110 14 chr3RHet 413681 416241 -2101266 + DOC4_DM LINE Jockey 1 2791 0 5 588 614 206 23 52 chr3RHet 416433 416607 -2100900 - Gypsy8_I LTR Gypsy -4118 229 61 5 588 1305 147 27 87 chr3RHet 416737 417035 -2100472 - Gypsy8_LTR LTR Gypsy -24 280 1 5 588 919 218 123 15 chr3RHet 417035 417431 -2100076 + Gypsy8_I LTR Gypsy 1039 1220 -3127 5 588 505 191 0 0 chr3RHet 417439 417533 -2099974 + Gypsy8_I LTR Gypsy 1501 1594 -2753 5 588 1297 192 260 26 chr3RHet 417539 418031 -2099476 + Gypsy8_I LTR Gypsy 1836 2347 -2000 5 588 31 26 0 0 chr3RHet 418292 418330 -2099177 + AT_rich Low_complexity Low_complexity 1 38 0 5 588 579 154 164 0 chr3RHet 418347 418457 -2099050 + DNAREP1_DM LINE Penelope 312 439 -155 5 588 1480 69 15 0 chr3RHet 419263 419465 -2098042 + BARI1 DNA Tc1 1487 1691 -59 5 588 236 257 0 13 chr3RHet 420324 420399 -2097108 + DMCR1A LINE CR1 6 79 -4391 5 588 241 295 0 0 chr3RHet 422487 422565 -2094942 + ZAM_I LTR Gypsy 4297 4374 -3116 5 588 316 281 56 39 chr3RHet 423109 423287 -2094220 + TIRANT_I LTR Gypsy 5560 5740 -1952 5 588 1463 163 147 0 chr3RHet 423307 423626 -2093881 + Gypsy12A_LTR LTR Gypsy 30 395 -1885 5 588 1360 213 69 80 chr3RHet 423651 424289 -2093218 + Gypsy12A_LTR LTR Gypsy 1180 1810 -470 5 588 21 0 0 0 chr3RHet 424313 424334 -2093173 + AT_rich Low_complexity Low_complexity 1 21 0 5 588 1520 119 101 38 chr3RHet 424344 424632 -2092875 + Gypsy12A_LTR LTR Gypsy 1805 2110 -170 5 588 698 154 110 0 chr3RHet 424631 424767 -2092740 + DNAREP1_DM LINE Penelope 444 594 0 5 588 286 287 77 0 chr3RHet 424640 424783 -2092724 - P_DG DNA P -3 2885 2732 5 588 4908 19 0 8 chr3RHet 425349 425939 -2091568 - DOC LINE Jockey -1 4724 4140 5 588 23943 5 0 1 chr3RHet 425911 428596 -2088911 - DOC LINE Jockey -919 3806 1124 5 588 26 82 0 0 chr3RHet 430476 430537 -2086970 + AT_rich Low_complexity Low_complexity 1 61 0 5 588 601 177 31 31 chr3RHet 432726 432889 -2084618 - DM297_LTR LTR Gypsy -127 287 125 5 588 4630 108 172 66 chr3RHet 433190 434109 -2083398 + DMRT1C LINE R1 2110 3125 -2318 5 588 795 101 69 8 chr3RHet 434092 434222 -2083285 + DMRT1C LINE R1 3709 3846 -1597 5 588 2831 103 68 2 chr3RHet 434209 434638 -2082869 + DMRT1C LINE R1 4144 4600 -843 5 588 317 159 0 45 chr3RHet 435809 435875 -2081632 - DNAREP1_DM LINE Penelope -531 63 1 5 588 29 0 0 0 chr3RHet 435875 435904 -2081603 + AT_rich Low_complexity Low_complexity 1 29 0 5 588 589 292 132 47 chr3RHet 435984 437289 -2080218 - IDEFIX_I LTR Gypsy -1857 4106 2426 5 588 1017 311 95 20 chr3RHet 437329 437927 -2079580 - TOM_I LTR Gypsy -3451 2661 2019 5 588 1670 145 60 16 chr3RHet 438225 438541 -2078966 - FW_DM LINE Jockey -8 4684 4355 5 588 1962 47 8 45 chr3RHet 438656 438924 -2078583 - BLOOD_LTR LTR Gypsy -141 258 1 5 588 48253 11 23 11 chr3RHet 438924 445367 -2072140 - BLOOD_I LTR Gypsy 0 6613 32 5 588 1984 43 8 45 chr3RHet 445495 445763 -2071744 - BLOOD_LTR LTR Gypsy -141 258 1 5 588 24903 9 30 1 chr3RHet 445763 448700 -2068807 - BLOOD_I LTR Gypsy 0 6613 3592 5 588 8061 10 0 2 chr3RHet 520792 521685 -1995822 + Gypsy2_I LTR Gypsy 5070 5960 -175 5 588 1392 24 0 0 chr3RHet 521728 521894 -1995613 + Gypsy2_I LTR Gypsy 5966 6131 -4 5 588 3231 11 0 0 chr3RHet 521902 522255 -1995252 + Gypsy2_LTR LTR Gypsy 1 353 0 5 588 282 255 103 48 chr3RHet 522255 522420 -1995087 - DM412 LTR Gypsy -28 6869 6696 5 588 192 40 0 0 chr3RHet 522467 522492 -1995015 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5 73 8654 175 12 1 chr3RHet 522503 524532 -1992975 - DM412 LTR Gypsy -600 6297 4211 5 589 2850 265 86 13 chr3RHet 524513 525580 -1991927 - DM412 LTR Gypsy -2885 4012 2868 5 589 241 161 0 82 chr3RHet 525563 525624 -1991883 - Gypsy11_I LTR Gypsy -1043 2481 2426 5 589 11942 14 29 6 chr3RHet 525632 527352 -1990155 + Gypsy2_I LTR Gypsy 4201 5960 -175 5 589 260 316 0 0 chr3RHet 527319 527395 -1990112 + Gypsy3_I LTR Gypsy 5930 6005 -172 5 589 1055 0 0 0 chr3RHet 527396 527509 -1989998 + Gypsy2_LTR LTR Gypsy 241 353 0 5 589 282 255 103 48 chr3RHet 527509 527674 -1989833 - DM412 LTR Gypsy -28 6869 6696 5 589 40 0 0 0 chr3RHet 527705 527745 -1989762 + AT_rich Low_complexity Low_complexity 1 40 0 5 589 8645 173 13 2 chr3RHet 527756 529785 -1987722 - DM412 LTR Gypsy -600 6297 4211 5 589 3438 270 95 33 chr3RHet 529774 531427 -1986080 - STALKER4_I LTR Gypsy -2903 3627 1873 5 589 25 65 0 0 chr3RHet 531520 531566 -1985941 + AT_rich Low_complexity Low_complexity 1 46 0 5 589 483 238 55 60 chr3RHet 531706 531907 -1985600 - DM412 LTR Gypsy -5470 1427 1228 5 589 559 178 63 78 chr3RHet 532030 532339 -1985168 - Gypsy11_I LTR Gypsy -5711 885 593 5 589 226 150 0 0 chr3RHet 532417 532457 -1985050 - Gypsy11_I LTR Gypsy -6051 545 506 5 589 391 162 264 9 chr3RHet 532458 532564 -1984943 - MDG1_I LTR Gypsy -6012 584 452 5 589 46 0 0 0 chr3RHet 532961 533007 -1984500 + AT_rich Low_complexity Low_complexity 1 46 0 5 589 2183 122 30 8 chr3RHet 533021 533384 -1984123 - MDG1_I LTR Gypsy -6136 460 90 5 589 339 279 16 68 chr3RHet 533471 533663 -1983844 - Gypsy11_LTR LTR Gypsy -171 281 100 5 589 332 239 110 42 chr3RHet 533558 533676 -1983831 - T412LTR LTR LTR -296 185 60 5 589 9404 32 1 2 chr3RHet 533713 534819 -1982688 - PROTOP_A DNA P 0 1105 1 5 589 2002 47 8 45 chr3RHet 534865 535133 -1982374 + BLOOD_LTR LTR Gypsy 1 258 -141 5 589 55910 13 26 9 chr3RHet 535248 541752 -1975755 + BLOOD_I LTR Gypsy 1 6613 0 5 589 906 44 35 0 chr3RHet 541752 541866 -1975641 + BLOOD_LTR LTR Gypsy 1 118 -281 5 589 5099 144 24 0 chr3RHet 541849 542656 -1974851 - NINJA_I LTR Pao -3587 2424 1599 5 589 1592 27 38 12 chr3RHet 542653 542912 -1974595 + BLOOD_I LTR Gypsy 6277 6613 0 5 589 2025 43 8 45 chr3RHet 542912 543180 -1974327 + BLOOD_LTR LTR Gypsy 1 258 -141 5 589 2610 32 3 0 chr3RHet 543310 543625 -1973882 + PROTOP DNA P 214 529 -3951 5 589 6318 110 104 0 chr3RHet 543626 544616 -1972891 - NINJA_I LTR Pao -1075 4936 3844 5 589 2922 68 83 0 chr3RHet 544615 545014 -1972493 - NINJA_I LTR Pao -2731 3280 2849 5 589 8428 121 52 0 chr3RHet 545013 546295 -1971212 - NINJA_I LTR Pao -3473 2538 1191 5 589 413 68 16 33 chr3RHet 547612 547673 -1969834 + DOC3_DM LINE Jockey 3663 3722 -1018 5 589 11717 79 42 4 chr3RHet 547668 549386 -1968121 - DOC3_DM LINE Jockey -22 4771 2960 5 589 5586 44 38 0 chr3RHet 549390 550072 -1967435 - DOC3_DM LINE Jockey -2267 2473 1766 5 589 6876 36 7 0 chr3RHet 550061 550885 -1966622 - DMRT1B LINE R1 0 5183 4354 5 589 10284 41 45 7 chr3RHet 550880 552155 -1965352 - DMRT1B LINE R1 -1285 3898 2575 5 589 8841 41 30 5 chr3RHet 552151 553270 -1964237 - DOC3_DM LINE Jockey -2951 1789 642 5 589 6530 31 26 1 chr3RHet 553270 554073 -1963434 + PROTOP DNA P 1 823 -3657 5 589 5993 16 0 0 chr3RHet 554068 554747 -1962760 + PROTOP DNA P 3802 4480 0 5 589 4690 49 51 10 chr3RHet 554747 555369 -1962138 - DOC3_DM LINE Jockey -4092 648 1 5 589 4029 95 50 7 chr3RHet 555502 556096 -1961411 - R1-2_DM LINE R1 -683 2533 1914 5 589 2137 103 0 0 chr3RHet 556099 556401 -1961106 - R1-2_DM LINE R1 -1410 1806 1505 5 589 575 160 0 0 chr3RHet 556402 556502 -1961005 - R1-2_DM LINE R1 -3083 133 34 5 589 440 230 0 0 chr3RHet 556682 556782 -1960725 - R1_DM LINE R1 -4893 463 364 5 589 1877 171 83 40 chr3RHet 556777 557296 -1960211 - DNAREP1_DM LINE Penelope -53 541 1 5 589 21 0 0 0 chr3RHet 558287 558308 -1959199 + AT_rich Low_complexity Low_complexity 1 21 0 5 589 2451 134 113 22 chr3RHet 558416 558956 -1958551 + DNAREP1_DM LINE Penelope 6 594 0 5 589 2921 136 201 0 chr3RHet 559186 559931 -1957576 - DMCR1A LINE CR1 -1184 3286 2393 5 589 941 149 0 47 chr3RHet 559932 560185 -1957322 + DMSAT6 Satellite Satellite 145 385 -85 5 589 3791 50 18 6 chr3RHet 560185 560988 -1956519 - PROTOP_A DNA P 0 1105 429 5 589 1466 150 31 59 chr3RHet 560989 561465 -1956042 + DMSAT6 Satellite Satellite 5 467 -3 5 589 1715 144 24 39 chr3RHet 561510 561978 -1955529 + DMSAT6 Satellite Satellite 5 465 -5 5 589 186 71 0 0 chr3RHet 562023 562051 -1955456 + (T)n Simple_repeat Simple_repeat 1 28 0 5 589 53 40 0 0 chr3RHet 562156 562230 -1955277 + AT_rich Low_complexity Low_complexity 1 74 0 5 589 1439 141 25 25 chr3RHet 562235 562512 -1954995 - HOBO DNA hAT -2739 277 1 5 589 4522 98 114 5 chr3RHet 562608 563537 -1953970 + S_DM DNA Tc1 1 1030 -706 5 589 8930 83 71 2 chr3RHet 563535 565206 -1952301 - DOC3_DM LINE Jockey 0 4740 2970 5 589 5186 43 40 1 chr3RHet 565219 565901 -1951606 - DOC3_DM LINE Jockey -2267 2473 1766 5 589 6378 36 8 7 chr3RHet 565891 566720 -1950787 - DMRT1B LINE R1 0 5183 4354 5 589 3476 43 2 0 chr3RHet 566716 567162 -1950345 - DMRT1B LINE R1 -1286 3897 3451 5 589 5414 37 63 25 chr3RHet 567161 567906 -1949601 - DMRT1B LINE R1 -1836 3347 2575 5 589 10613 38 21 3 chr3RHet 567902 569314 -1948193 - DOC3_DM LINE Jockey -2951 1789 353 5 589 3540 119 53 15 chr3RHet 569304 569967 -1947540 + S_DM DNA Tc1 1049 1736 0 5 589 376 206 39 0 chr3RHet 569974 570076 -1947431 + Copia_I LTR Copia 1390 1495 -3098 5 589 214 264 17 43 chr3RHet 571281 571396 -1946111 + T-rich Low_complexity Low_complexity 2 113 0 5 589 663 327 54 8 chr3RHet 571425 571958 -1945549 - Invader2_I LTR Gypsy -148 4444 3887 5 589 17407 42 9 35 chr3RHet 572052 574450 -1943057 + Gypsy12_LTR LTR Gypsy 1 2336 0 5 589 2550 199 39 7 chr3RHet 574458 575050 -1942457 + TOM_I LTR Gypsy 2541 3151 -2961 5 589 389 248 17 17 chr3RHet 575031 575146 -1942361 + DM297_I LTR Gypsy 3380 3494 -2673 5 589 3222 261 21 9 chr3RHet 575146 576185 -1941322 + TOM_I LTR Gypsy 4557 5608 -504 5 589 1831 48 40 4 chr3RHet 576343 576594 -1940913 - DMTOM1_LTR LTR Gypsy -150 260 1 5 589 365 261 38 38 chr3RHet 576592 576751 -1940756 - DM176_I LTR Gypsy 0 6420 6262 5 589 371 299 103 23 chr3RHet 577601 577902 -1939605 - OSVALDO_I LTR Gypsy -4364 2289 1965 5 589 2605 116 10 69 chr3RHet 578801 579322 -1938185 + IDEFIX_LTR LTR Gypsy 105 594 0 5 589 30 19 0 54 chr3RHet 579547 579603 -1937904 + AT_rich Low_complexity Low_complexity 1 53 0 5 589 6797 171 35 34 chr3RHet 579611 581050 -1936457 + IDEFIX_I LTR Gypsy 48 1487 -4141 5 589 499 132 0 0 chr3RHet 581052 581128 -1936379 + IDEFIX_I LTR Gypsy 1726 1801 -3827 5 589 1232 124 43 0 chr3RHet 581128 581337 -1936170 + IDEFIX_I LTR Gypsy 2276 2493 -3135 5 589 8885 118 96 5 chr3RHet 581356 584117 -1933390 + IDEFIX_I LTR Gypsy 2616 5626 -2 5 589 1393 124 107 13 chr3RHet 584116 584426 -1933081 + IDEFIX_LTR LTR Gypsy 3 341 -253 5 589 1667 45 5 0 chr3RHet 584427 584647 -1932860 - S2_DM DNA Tc1 -767 968 748 5 589 46 0 0 0 chr3RHet 584665 584711 -1932796 + AT_rich Low_complexity Low_complexity 1 46 0 5 589 3032 126 18 18 chr3RHet 584745 585296 -1932211 + DOC LINE Jockey 4147 4697 -28 5 589 414 37 0 0 chr3RHet 585314 585368 -1932139 - DNAREP1_DM LINE Penelope -360 234 181 5 589 306 53 0 0 chr3RHet 585417 585455 -1932052 + DNAREP1_DM LINE Penelope 445 482 -112 5 589 9263 48 38 10 chr3RHet 585460 586716 -1930791 + DMCR1A LINE CR1 1547 2837 -1633 5 589 887 51 0 0 chr3RHet 586710 586828 -1930679 + DMCR1A LINE CR1 2964 3081 -1389 5 589 7705 66 75 7 chr3RHet 586828 588002 -1929505 + DMCR1A LINE CR1 3183 4470 0 5 589 325 57 0 70 chr3RHet 588007 588064 -1929443 + DNAREP1_DM LINE Penelope 508 560 -34 5 589 32 43 0 0 chr3RHet 588083 588129 -1929378 + AT_rich Low_complexity Low_complexity 1 46 0 5 589 268 340 6 6 chr3RHet 588640 588803 -1928704 - BURDOCK_I LTR Gypsy -4878 982 820 5 589 31 26 0 0 chr3RHet 589826 589864 -1927643 + AT_rich Low_complexity Low_complexity 1 38 0 5 589 216 0 0 0 chr3RHet 590288 590312 -1927195 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 589 7498 246 72 43 chr3RHet 590322 593383 -1924124 + TOM_I LTR Gypsy 1 3149 -2963 5 589 746 271 115 11 chr3RHet 593366 593732 -1923775 + DM297_I LTR Gypsy 3380 3783 -2384 5 589 1588 225 81 0 chr3RHet 593727 594122 -1923385 + DM297_I LTR Gypsy 3994 4420 -1747 5 589 3487 269 16 6 chr3RHet 594126 595276 -1922231 + TOM_I LTR Gypsy 4425 5585 -527 5 589 266 275 28 0 chr3RHet 595283 595392 -1922115 + TOM_I LTR Gypsy 5805 5916 -196 5 589 475 70 0 0 chr3RHet 595431 595502 -1922005 - DMTOM1_LTR LTR Gypsy -150 260 190 5 589 47 0 0 0 chr3RHet 596005 596052 -1921455 + AT_rich Low_complexity Low_complexity 1 47 0 5 589 676 123 0 9 chr3RHet 597852 597959 -1919548 - DMCR1A LINE CR1 -3024 1446 1341 5 589 1564 154 229 16 chr3RHet 597951 598382 -1919125 - DMCR1A LINE CR1 -3594 876 354 5 589 338 219 23 8 chr3RHet 598382 598511 -1918996 - DMCR1A LINE CR1 -4233 237 107 5 589 575 273 54 54 chr3RHet 598545 598827 -1918680 + DOC3_DM LINE Jockey 1313 1569 -3171 5 589 23 0 0 0 chr3RHet 600919 600942 -1916565 + AT_rich Low_complexity Low_complexity 1 23 0 5 589 213 241 0 48 chr3RHet 601166 601249 -1916258 + T-rich Low_complexity Low_complexity 6 84 0 5 589 21 57 0 0 chr3RHet 601478 601513 -1915994 + AT_rich Low_complexity Low_complexity 1 35 0 5 589 867 164 116 53 chr3RHet 601794 602019 -1915488 + DNAREP1_DM LINE Penelope 319 557 -37 5 589 435 267 30 35 chr3RHet 603814 604016 -1913491 - DMRT1C LINE R1 -4833 610 410 5 589 323 200 0 0 chr3RHet 604049 604109 -1913398 - DMRT1C LINE R1 -5229 214 155 5 589 930 168 193 47 chr3RHet 604418 604933 -1912574 - DNAREP1_DM LINE Penelope -50 544 59 5 589 9664 35 5 1 chr3RHet 604970 606177 -1911330 + G5_DM LINE Jockey 367 1578 -3278 5 589 603 14 0 0 chr3RHet 606176 606248 -1911259 + G5_DM LINE Jockey 2113 2184 -2672 5 589 20580 19 17 0 chr3RHet 606264 608751 -1908756 + G5_DM LINE Jockey 2327 4855 -1 5 589 340 74 0 18 chr3RHet 610160 610215 -1907292 - DNAREP1_DM LINE Penelope -347 247 194 5 589 401 151 302 0 chr3RHet 610215 610321 -1907186 - MAX_I LTR Pao -2395 5519 5382 5 589 2653 147 136 12 chr3RHet 610342 611062 -1906445 - MAX_I LTR Pao -2615 5299 4417 5 589 635 165 142 24 chr3RHet 611065 611506 -1906001 - DNAREP1_DM LINE Penelope -265 329 100 5 589 1841 112 57 53 chr3RHet 611516 612007 -1905500 - DNAREP1_DM LINE Penelope 0 594 1 5 589 585 290 34 0 chr3RHet 612041 612248 -1905259 - DMCR1A LINE CR1 -2570 1900 1687 5 589 227 217 0 0 chr3RHet 612322 612368 -1905139 - DM412B_LTR LTR Gypsy -291 280 235 5 589 326 237 13 0 chr3RHet 612907 612983 -1904524 - Gypsy8_I LTR Gypsy -4269 78 2 5 589 323 260 177 61 chr3RHet 612985 613149 -1904358 - Gypsy8_LTR LTR Gypsy -1 303 121 5 589 427 243 12 100 chr3RHet 613528 613688 -1903819 - Gypsy8_I LTR Gypsy -203 4144 3999 5 589 4147 46 175 34 chr3RHet 613867 614648 -1902859 - G3_DM LINE Jockey -59 4546 3656 5 589 7083 65 9 0 chr3RHet 614644 615550 -1901957 - G3_DM LINE Jockey -1142 3463 2550 5 589 319 75 0 36 chr3RHet 615544 615599 -1901908 - G3_DM LINE Jockey -2700 1905 1853 5 589 772 102 225 10 chr3RHet 615628 615829 -1901678 + DNAREP1_DM LINE Penelope 16 259 -335 5 589 40695 16 23 6 chr3RHet 615875 620579 -1896928 + DOC2_DM LINE Jockey 9 4793 0 5 589 346 114 544 0 chr3RHet 620593 620756 -1896751 + DNAREP1_DM LINE Penelope 305 581 -13 5 589 831 148 204 71 chr3RHet 620881 621150 -1896357 + Gypsy3_LTR LTR Gypsy 1 305 -93 5 589 29002 61 62 11 chr3RHet 621178 625027 -1892480 - DMCR1A LINE CR1 0 4470 427 5 589 9875 133 45 0 chr3RHet 625027 626680 -1890827 - DMRT1B LINE R1 0 5183 3456 5 589 5151 110 85 1 chr3RHet 626674 627571 -1889936 - DMRT1B LINE R1 -1871 3312 2341 5 589 2879 116 14 0 chr3RHet 627571 627993 -1889514 - DMRT1B LINE R1 -3068 2115 1688 5 589 3200 137 81 0 chr3RHet 627998 628553 -1888954 - DMRT1B LINE R1 -4088 1095 496 5 589 2903 73 30 23 chr3RHet 628706 629143 -1888364 - DMCR1A LINE CR1 -4030 440 1 5 589 1449 271 34 19 chr3RHet 629537 629954 -1887553 + Gypsy3_I LTR Gypsy 525 947 -5230 5 589 4873 171 110 49 chr3RHet 629963 632239 -1885268 + Gypsy3_I LTR Gypsy 1072 3879 -2298 5 589 3838 165 83 21 chr3RHet 632242 632967 -1884540 + Gypsy3_I LTR Gypsy 4139 4908 -1269 5 589 4736 155 90 93 chr3RHet 632989 634014 -1883493 + Gypsy3_I LTR Gypsy 5156 6177 0 5 589 285 169 185 0 chr3RHet 634014 634079 -1883428 + Gypsy3_LTR LTR Gypsy 1 77 -330 5 589 28 0 0 0 chr3RHet 634083 634111 -1883396 + AT_rich Low_complexity Low_complexity 1 28 0 5 589 676 199 64 49 chr3RHet 634112 634369 -1883138 + Gypsy3_LTR LTR Gypsy 150 398 0 5 589 336 128 124 31 chr3RHet 634763 634860 -1882647 + Gypsy6_LTR LTR Gypsy 155 260 -147 5 589 23 33 0 0 chr3RHet 635627 635657 -1881850 + AT_rich Low_complexity Low_complexity 1 30 0 5 589 11917 56 29 11 chr3RHet 636538 638043 -1879464 - G5A_DM LINE Jockey 0 2841 1311 5 589 3963 18 0 4 chr3RHet 638041 638493 -1879014 - DMCR1A LINE CR1 -1 4469 4020 5 589 8159 36 47 22 chr3RHet 638493 639571 -1877936 - PROTOP_A DNA P 0 1105 1 5 589 8284 49 47 0 chr3RHet 639571 640857 -1876650 - DMCR1A LINE CR1 -444 4026 2680 5 589 4165 217 85 58 chr3RHet 640871 643144 -1874363 + Gypsy12_LTR LTR Gypsy 1 2336 0 5 589 1257 240 59 8 chr3RHet 643399 643937 -1873570 - DOC4_DM LINE Jockey -2040 2753 1865 5 589 376 295 55 40 chr3RHet 643977 644178 -1873329 - Invader4_I LTR Gypsy -2203 210 7 5 589 2362 117 103 4 chr3RHet 644490 645240 -1872267 + S_DM DNA Tc1 1 880 -856 5 589 2375 39 104 0 chr3RHet 645245 645552 -1871955 - DOC3_DM LINE Jockey -185 4555 4217 5 589 11024 38 59 0 chr3RHet 645558 647745 -1869762 - DOC3_DM LINE Jockey -663 4077 1762 5 589 4857 48 60 11 chr3RHet 647742 648394 -1869113 - DOC3_DM LINE Jockey -3582 1158 475 5 589 2111 24 0 0 chr3RHet 648392 648641 -1868866 - FW_DM LINE Jockey -3 4689 4441 5 589 7288 16 0 0 chr3RHet 648640 649460 -1868047 - FW_DM LINE Jockey -1116 3576 2757 5 589 20996 20 2 5 chr3RHet 649467 651866 -1865641 - FW_DM LINE Jockey -2296 2396 3 5 589 2612 52 87 0 chr3RHet 651879 652327 -1865180 - DOC3_DM LINE Jockey -4253 487 1 5 589 4090 112 57 9 chr3RHet 652317 653014 -1864493 + S_DM DNA Tc1 1006 1736 0 5 589 258 222 75 32 chr3RHet 653171 653264 -1864243 - Gypsy6A_LTR LTR Gypsy -117 303 207 5 589 2237 78 107 51 chr3RHet 654120 654512 -1862995 - DM297_LTR LTR Gypsy 0 414 1 5 589 2528 71 105 23 chr3RHet 654512 655163 -1862344 - DM297_I LTR Gypsy 0 6167 5464 5 73 7887 59 79 1 chr3RHet 655162 656238 -1861269 - DM297_I LTR Gypsy -1879 4288 3129 5 590 2354 48 25 22 chr3RHet 656236 656558 -1860949 - DM297_I LTR Gypsy -3234 2933 2611 5 590 14459 89 54 15 chr3RHet 656562 658820 -1858687 - DM297_I LTR Gypsy -3821 2346 1 5 590 1135 88 23 6 chr3RHet 658820 658991 -1858516 - DM297_LTR LTR Gypsy 0 414 241 5 590 1026 308 91 22 chr3RHet 659261 659899 -1857608 - FW2_DM LINE Jockey -524 3437 2756 5 590 376 147 59 0 chr3RHet 660299 660367 -1857140 + DMCR1A LINE CR1 3198 3269 -1201 5 590 3962 9 0 0 chr3RHet 660865 661310 -1856197 + FW_DM LINE Jockey 2831 3275 -1417 5 590 376 147 59 0 chr3RHet 661808 661876 -1855631 - DMCR1A LINE CR1 -1201 3269 3198 5 590 1086 305 146 16 chr3RHet 662276 663079 -1854428 + FW2_DM LINE Jockey 2756 3662 -299 5 590 651 97 0 0 chr3RHet 663271 663374 -1854133 - Mariner2_DM DNA Tc1 -18 894 792 5 590 3826 35 80 0 chr3RHet 663359 663844 -1853663 - DOC3_DM LINE Jockey 0 4740 4217 5 590 11014 32 63 0 chr3RHet 663850 665448 -1852059 - DOC3_DM LINE Jockey -663 4077 2380 5 590 230 281 11 11 chr3RHet 668293 668383 -1849124 + BLASTOPIA_I LTR Gypsy 2646 2735 -1746 5 590 262 358 0 0 chr3RHet 669406 669617 -1847890 + Invader3_I LTR Gypsy 4059 4193 -695 5 590 266 26 0 26 chr3RHet 670370 670409 -1847098 - DOC3_DM LINE Jockey -3261 1479 1442 5 590 476 30 0 29 chr3RHet 670400 670469 -1847038 - DOC3_DM LINE Jockey -3413 1327 1261 5 590 542 15 0 0 chr3RHet 670481 670546 -1846961 - DOC3_DM LINE Jockey -3793 947 883 5 590 2389 39 0 0 chr3RHet 670544 670851 -1846656 - DOC3_DM LINE Jockey -4136 604 298 5 590 2870 78 38 2 chr3RHet 670878 671300 -1846207 - Mariner2_DM DNA Tc1 -103 809 373 5 590 507 61 0 0 chr3RHet 671297 671363 -1846144 - Mariner2_DM DNA Tc1 -822 90 25 5 590 653 109 0 0 chr3RHet 671368 671469 -1846038 - DNAREP1_DM LINE Penelope 0 594 494 5 590 1137 126 301 0 chr3RHet 671486 671790 -1845717 - DNAREP1_DM LINE Penelope -199 395 1 5 590 330 297 0 0 chr3RHet 672817 672918 -1844589 + Jockey2 LINE Jockey 721 821 -2607 5 590 357 284 0 0 chr3RHet 673745 673847 -1843660 + Jockey2 LINE Jockey 1900 2001 -1427 5 590 605 124 215 0 chr3RHet 673999 674120 -1843387 - DNAREP1_DM LINE Penelope -10 584 438 5 590 1158 78 63 18 chr3RHet 674578 674801 -1842706 + S2_DM DNA Tc1 1 233 -1502 5 590 2549 68 213 7 chr3RHet 674824 675499 -1842008 - S2_DM DNA Tc1 -718 1017 204 5 590 5557 19 0 0 chr3RHet 675499 676178 -1841329 - PROTOP DNA P 0 4480 3802 5 590 6041 35 21 6 chr3RHet 676173 676984 -1840523 - PROTOP DNA P -3657 823 1 5 590 495 110 80 0 chr3RHet 676984 677084 -1840423 - S2_DM DNA Tc1 -1525 210 103 5 590 27 0 0 0 chr3RHet 677108 677135 -1840372 + AT_rich Low_complexity Low_complexity 1 27 0 5 590 471 174 179 7 chr3RHet 677308 677453 -1840054 + MDG1_I LTR Gypsy 5104 5273 -1323 5 590 398 204 19 0 chr3RHet 677482 677585 -1839922 + MDG1_I LTR Gypsy 5485 5589 -1007 5 590 335 187 13 0 chr3RHet 677580 677655 -1839852 + MDG1_I LTR Gypsy 5846 5921 -675 5 590 380 215 105 95 chr3RHet 677829 678019 -1839488 + GTWIN_LTR LTR Gypsy 162 353 -142 5 590 3037 84 42 6 chr3RHet 678391 678867 -1838640 - G5A_DM LINE Jockey -8 2833 2341 5 590 311 87 0 0 chr3RHet 678866 678912 -1838595 - G5A_DM LINE Jockey -657 2184 2139 5 590 609 195 112 6 chr3RHet 678922 679092 -1838415 + DMRT1B LINE R1 358 545 -4638 5 590 662 206 94 0 chr3RHet 679093 679253 -1838254 + DMRT1B LINE R1 1133 1307 -3876 5 590 1064 125 120 0 chr3RHet 679255 679447 -1838060 + DMRT1B LINE R1 4128 4342 -841 5 590 3222 136 2 2 chr3RHet 679445 679974 -1837533 + DMRT1B LINE R1 4466 4994 -189 5 590 466 279 68 0 chr3RHet 679976 680137 -1837370 - Gypsy6_I LTR Gypsy -212 6800 6629 5 590 663 10 224 0 chr3RHet 680146 680244 -1837263 - DMCR1A LINE CR1 -2 4468 4349 5 590 2854 43 5 0 chr3RHet 680235 680611 -1836896 + DOC3_DM LINE Jockey 4363 4740 0 5 590 422 285 20 55 chr3RHet 680874 681167 -1836340 - QUASIMODO_I LTR Gypsy -2979 3081 2836 5 590 930 282 102 37 chr3RHet 681237 681855 -1835652 - TOM_I LTR Gypsy -3337 3247 2203 5 590 2048 124 89 0 chr3RHet 682188 682559 -1834948 - FW_DM LINE Jockey -8 4684 4281 5 590 2343 167 267 1 chr3RHet 682581 683458 -1834049 - FW_DM LINE Jockey -2906 1786 676 5 590 1167 295 38 5 chr3RHet 683765 684428 -1833079 - QUASIMODO_I LTR Gypsy 0 6060 5376 5 590 318 238 0 10 chr3RHet 684427 684529 -1832978 - TV1I LTR Gypsy -1746 4217 4117 5 590 2365 28 75 27 chr3RHet 684543 684877 -1832630 - DMCR1A LINE CR1 0 4470 4121 5 590 2685 43 20 0 chr3RHet 684895 685243 -1832264 - DMCR1A LINE CR1 -1172 3298 2944 5 590 2137 39 91 0 chr3RHet 685251 685757 -1831750 - DMCR1A LINE CR1 -1682 2788 2237 5 590 1090 57 0 6 chr3RHet 685771 685931 -1831576 - DMCR1A LINE CR1 -4271 199 41 5 590 252 342 13 13 chr3RHet 685931 686082 -1831425 - Gypsy6_I LTR Gypsy -389 6623 6473 5 590 607 247 191 17 chr3RHet 686133 686364 -1831143 - Gypsy2_I LTR Gypsy -613 5522 5252 5 590 2170 249 130 7 chr3RHet 686612 687287 -1830220 - Gypsy6_I LTR Gypsy -1706 5306 4549 5 590 686 269 0 0 chr3RHet 687282 687464 -1830043 - Gypsy3_I LTR Gypsy -3418 2759 2578 5 590 1223 310 144 39 chr3RHet 688252 690356 -1827151 - Gypsy4_I LTR Gypsy -609 5679 3354 5 590 1114 306 0 0 chr3RHet 690363 690749 -1826758 - Gypsy2_I LTR Gypsy -3066 3069 2684 5 590 15941 72 11 8 chr3RHet 690864 693246 -1824261 - DOC3_DM LINE Jockey 0 4740 1580 5 590 2589 296 20 8 chr3RHet 693239 694272 -1823235 - Gypsy4_I LTR Gypsy -3585 2703 1658 5 590 298 277 0 0 chr3RHet 694631 694725 -1822782 - Gypsy4_I LTR Gypsy -5022 1266 1173 5 590 1865 43 8 45 chr3RHet 694846 695112 -1822395 - BLOOD_LTR LTR Gypsy -143 256 1 5 590 52037 13 27 9 chr3RHet 695112 701606 -1815901 - BLOOD_I LTR Gypsy 0 6613 1 5 590 1769 55 8 52 chr3RHet 701723 701991 -1815516 - BLOOD_LTR LTR Gypsy -143 256 1 5 590 573 286 106 21 chr3RHet 702008 702375 -1815132 - Gypsy4_I LTR Gypsy -3415 1262 743 5 590 4715 23 133 0 chr3RHet 702714 703589 -1813918 + G5_DM LINE Jockey 3866 4856 0 5 590 1165 261 9 13 chr3RHet 704431 704749 -1812758 - Gypsy2_I LTR Gypsy -3998 2137 1821 5 590 1359 309 122 31 chr3RHet 704749 705485 -1812022 - Gypsy3_I LTR Gypsy -4071 2106 1304 5 590 36 23 0 0 chr3RHet 705882 705925 -1811582 + AT_rich Low_complexity Low_complexity 1 43 0 5 590 6428 46 105 1 chr3RHet 705957 707001 -1810506 - PROTOP_B DNA P 0 1153 1 5 590 2793 304 73 34 chr3RHet 707001 708753 -1808754 + Gypsy4_I LTR Gypsy 933 2723 -3565 5 590 3026 284 100 47 chr3RHet 708786 710560 -1806947 + Gypsy4_I LTR Gypsy 2845 4712 -1576 5 590 794 358 33 25 chr3RHet 710659 711648 -1805859 + Gypsy4_I LTR Gypsy 5100 6096 -192 5 590 608 260 240 13 chr3RHet 712227 712535 -1804972 + Copia_I LTR Copia 1725 2102 -2491 5 590 4070 52 275 13 chr3RHet 712545 713249 -1804258 + DOC3_DM LINE Jockey 1 889 -3851 5 590 1421 19 126 0 chr3RHet 713249 713504 -1804003 - Gypsy4_LTR LTR Gypsy 0 287 1 5 590 12239 7 6 0 chr3RHet 713504 714928 -1802579 - Gypsy4_I LTR Gypsy 0 6288 4856 5 590 1852 308 28 11 chr3RHet 714931 715949 -1801558 + Gypsy4_I LTR Gypsy 2959 4712 -1576 5 590 784 359 33 25 chr3RHet 716024 717037 -1800470 + Gypsy4_I LTR Gypsy 5100 6096 -192 5 590 608 260 240 13 chr3RHet 717617 717925 -1799582 + Copia_I LTR Copia 1725 2102 -2491 5 590 4070 50 248 12 chr3RHet 717935 718654 -1798853 + DOC3_DM LINE Jockey 1 889 -3851 5 590 2394 24 0 0 chr3RHet 718654 718941 -1798566 - Gypsy4_LTR LTR Gypsy 0 287 1 5 590 37535 8 4 0 chr3RHet 718941 725211 -1792296 - Gypsy4_I LTR Gypsy 0 6288 1 5 590 2452 14 0 0 chr3RHet 725211 725498 -1792009 - Gypsy4_LTR LTR Gypsy 0 287 1 5 590 2020 34 26 19 chr3RHet 725498 725769 -1791738 + DOC3_DM LINE Jockey 886 1158 -3582 5 590 10235 35 6 3 chr3RHet 725766 727436 -1790071 + DOC3_DM LINE Jockey 1762 3760 -980 5 590 2493 55 12 0 chr3RHet 727438 727763 -1789744 + DOC3_DM LINE Jockey 4169 4497 -243 5 590 2847 56 15 0 chr3RHet 727756 728148 -1789359 + DOC3_DM LINE Jockey 4343 4740 0 5 590 280 265 52 21 chr3RHet 728150 728343 -1789164 + Copia_I LTR Copia 2097 2295 -2298 5 590 485 304 40 36 chr3RHet 728589 729044 -1788463 + Copia_I LTR Copia 2721 3380 -1213 5 590 2320 191 21 14 chr3RHet 729246 729771 -1787736 + FW_DM LINE Jockey 167 652 -4040 5 590 952 27 136 26 chr3RHet 729788 729942 -1787565 + DMCR1A LINE CR1 1 171 -4299 5 590 686 269 0 0 chr3RHet 730716 730898 -1786609 + Gypsy3_I LTR Gypsy 2578 2759 -3418 5 590 820 182 0 0 chr3RHet 730893 731047 -1786460 + Gypsy6_I LTR Gypsy 4549 4702 -2310 5 590 672 273 0 0 chr3RHet 731049 731232 -1786275 + Gypsy3_I LTR Gypsy 2577 2759 -3418 5 590 1657 259 25 5 chr3RHet 731227 731786 -1785721 + Gypsy6_I LTR Gypsy 3827 4926 -2086 5 590 219 188 0 0 chr3RHet 734810 734858 -1782649 + T-rich Low_complexity Low_complexity 1 48 0 5 590 312 148 0 0 chr3RHet 735175 735236 -1782271 + (T)n Simple_repeat Simple_repeat 1 61 0 5 590 7431 46 43 8 chr3RHet 735902 736888 -1780619 + DMCR1A LINE CR1 142 1161 -3309 5 590 17416 35 24 0 chr3RHet 736874 739072 -1778435 + DMCR1A LINE CR1 1319 3569 -901 5 590 4967 24 42 6 chr3RHet 739074 739709 -1777798 + DMCR1A LINE CR1 3813 4470 0 5 590 318 238 0 10 chr3RHet 739723 739825 -1777682 + TV1I LTR Gypsy 4117 4217 -1746 5 590 1203 292 38 5 chr3RHet 739824 740487 -1777020 + QUASIMODO_I LTR Gypsy 5376 6060 0 5 590 1705 166 267 1 chr3RHet 740794 741671 -1775836 + FW_DM LINE Jockey 676 1786 -2906 5 590 2019 127 89 0 chr3RHet 741693 742064 -1775443 + FW_DM LINE Jockey 4281 4684 -8 5 590 923 284 102 37 chr3RHet 742397 743015 -1774492 + ROVER-I_DM LTR Gypsy 2590 3247 -3337 5 590 378 300 10 25 chr3RHet 743088 743378 -1774129 + QUASIMODO_I LTR Gypsy 2547 3081 -2979 5 590 19836 39 51 4 chr3RHet 743641 748159 -1769348 - DOC3_DM LINE Jockey 0 4740 11 5 590 291 251 69 3 chr3RHet 748213 748410 -1769097 + DM297_I LTR Gypsy 3678 3996 -2171 5 590 312 50 0 0 chr3RHet 748536 748576 -1768931 + DNAREP1_DM LINE Penelope 1 40 -554 5 590 21 0 0 0 chr3RHet 750282 750303 -1767204 + AT_rich Low_complexity Low_complexity 1 21 0 5 590 418 131 78 67 chr3RHet 750380 750470 -1767037 + DNAREP1_DM LINE Penelope 503 593 -1 5 590 1432 169 40 15 chr3RHet 750817 751142 -1766365 - Gypsy2_LTR LTR Gypsy -17 336 4 5 590 361 149 0 119 chr3RHet 751144 751228 -1766279 - Gypsy2_I LTR Gypsy -11 6124 6051 5 590 26235 116 39 20 chr3RHet 751239 755727 -1761780 - Gypsy2_I LTR Gypsy -194 5941 1713 5 590 2655 148 43 2 chr3RHet 755747 756208 -1761299 - Gypsy2_I LTR Gypsy -4568 1567 1088 5 590 2348 109 2 52 chr3RHet 756210 756616 -1760891 - Gypsy12_LTR LTR Gypsy 0 2336 1951 5 590 5555 191 35 67 chr3RHet 756617 758203 -1759304 - Gypsy12_LTR LTR Gypsy -800 1536 2 5 590 6660 79 0 10 chr3RHet 758203 759107 -1758400 - Gypsy12_I LTR Gypsy -31 5515 4621 5 590 459 143 0 0 chr3RHet 759130 759207 -1758300 - Gypsy2_I LTR Gypsy -4971 1164 1088 5 590 2373 107 2 52 chr3RHet 759209 759615 -1757892 - Gypsy12_LTR LTR Gypsy 0 2336 1951 5 590 3177 189 52 69 chr3RHet 759616 760593 -1756914 - Gypsy12_LTR LTR Gypsy -800 1536 576 5 590 3046 80 0 2 chr3RHet 760593 761008 -1756499 - Gypsy12_I LTR Gypsy -788 4758 4345 5 590 3196 111 4 0 chr3RHet 761001 761477 -1756030 - Gypsy12_I LTR Gypsy -3348 2198 1721 5 590 3100 79 0 15 chr3RHet 761474 762151 -1755356 - Gypsy12_I LTR Gypsy -4026 1520 810 5 590 5509 45 19 8 chr3RHet 762151 763378 -1754129 - PROTOP DNA P 0 1105 1 5 590 437 146 0 33 chr3RHet 763378 763467 -1754040 - Gypsy12_I LTR Gypsy -4730 816 731 5 590 676 300 74 32 chr3RHet 763477 763939 -1753568 - TV1I LTR Gypsy -5066 897 417 5 590 186 43 0 0 chr3RHet 763972 763995 -1753512 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 5 590 2596 219 103 14 chr3RHet 764694 765487 -1752020 + TOM_I LTR Gypsy 2196 3059 -3053 5 590 854 224 91 17 chr3RHet 765561 765793 -1751714 + TOM_I LTR Gypsy 3727 3975 -2137 5 590 3249 43 0 0 chr3RHet 765793 766210 -1751297 + PROTOP_A DNA P 1 417 -688 5 590 616 303 20 20 chr3RHet 766526 766826 -1750681 - TV1I LTR Gypsy -5066 897 598 5 590 3621 94 20 36 chr3RHet 766847 767899 -1749608 - Gypsy12_I LTR Gypsy -4442 1104 9 5 590 40708 3 0 0 chr3RHet 767908 772631 -1744876 + DOC LINE Jockey 3 4725 0 5 590 4258 48 15 3 chr3RHet 772674 773416 -1744091 - PROTOP DNA P -332 773 159 5 590 6047 55 73 0 chr3RHet 773516 774405 -1743102 + DM297_I LTR Gypsy 3191 4144 -2023 5 590 2242 60 190 4 chr3RHet 774398 774950 -1742557 + DM297_I LTR Gypsy 3697 4351 -1816 5 590 5617 112 18 18 chr3RHet 774920 775995 -1741512 + MDG1_I LTR Gypsy 5401 6799 -98 5 590 1620 25 0 9 chr3RHet 775999 776324 -1741183 + (TAA)n Simple_repeat Simple_repeat 1 322 0 5 590 1371 145 93 13 chr3RHet 776326 776626 -1740881 + MDG1_LTR LTR Gypsy 89 412 -30 5 590 600 255 15 15 chr3RHet 776627 776822 -1740685 + BS2 LINE Jockey 2721 2915 -1806 5 590 2801 81 25 0 chr3RHet 776817 777213 -1740294 + BS3_DM LINE Jockey 16 421 -1369 5 590 3913 74 12 0 chr3RHet 777213 777726 -1739781 + BS3_DM LINE Jockey 526 1044 -746 5 590 1812 76 0 0 chr3RHet 777716 777952 -1739555 + BS3_DM LINE Jockey 1311 1546 -244 5 590 15882 71 74 2 chr3RHet 777960 780269 -1737238 + DM297_I LTR Gypsy 2179 4653 -1514 5 590 229 163 47 0 chr3RHet 780527 780570 -1736937 + DM176_LTR LTR Gypsy 180 224 -283 5 590 315 0 44 22 chr3RHet 780544 780589 -1736918 + DM297_LTR LTR Gypsy 125 170 -244 5 590 2423 70 40 14 chr3RHet 780575 780923 -1736584 - QUASIMODO_LTR LTR Gypsy -301 357 1 5 590 32 26 0 0 chr3RHet 780932 780971 -1736536 + AT_rich Low_complexity Low_complexity 1 39 0 5 590 641 190 0 0 chr3RHet 781004 781141 -1736366 - QUASIMODO_I LTR Gypsy -304 5756 5620 5 590 8093 248 56 11 chr3RHet 781161 783811 -1733696 - QUASIMODO_I LTR Gypsy -1461 4599 1830 5 590 901 308 32 19 chr3RHet 783898 784371 -1733136 - TV1I LTR Gypsy -5056 907 429 5 590 213 209 14 43 chr3RHet 784392 784462 -1733045 + (TTG)n Simple_repeat Simple_repeat 2 69 0 5 590 3033 119 89 33 chr3RHet 784803 785401 -1732106 - QUASIMODO_LTR LTR Gypsy -27 631 1 5 590 954 132 33 11 chr3RHet 785421 785604 -1731903 + DMCR1A LINE CR1 7 193 -4277 5 73 7803 57 8 8 chr3RHet 785603 786605 -1730902 + DMCR1A LINE CR1 1350 2351 -2119 5 591 219 125 0 0 chr3RHet 786608 786648 -1730859 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 591 1845 56 261 0 chr3RHet 786649 786936 -1730571 - ROOA_I LTR Pao -1844 5005 4644 5 591 3236 38 91 3 chr3RHet 786933 787702 -1729805 + DMCR1A LINE CR1 2950 3786 -684 5 591 1544 34 0 104 chr3RHet 787704 787934 -1729573 - MDG3_LTR LTR Gypsy -61 206 1 5 591 13336 18 16 1 chr3RHet 787934 789705 -1727802 - MDG3_I LTR Gypsy 0 4986 3155 5 591 13595 20 126 48 chr3RHet 789705 791565 -1725942 - MDG3_I LTR Gypsy -2980 2006 1 5 591 1905 49 3 92 chr3RHet 791564 791857 -1725650 - MDG3_LTR LTR Gypsy 0 267 1 5 591 1406 29 12 0 chr3RHet 791857 792027 -1725480 + DMCR1A LINE CR1 4298 4469 -1 5 591 4400 51 84 3 chr3RHet 792026 792620 -1724887 - ROOA_I LTR Pao -2215 4634 3993 5 591 1632 23 116 0 chr3RHet 792614 792830 -1724677 - ROOA_I LTR Pao -4390 2459 2219 5 591 2478 48 122 0 chr3RHet 792850 793187 -1724320 - ROOA_LTR LTR Pao 0 386 9 5 591 812 28 0 0 chr3RHet 793189 793296 -1724211 + DMCR1A LINE CR1 202 308 -4162 5 591 4388 10 0 0 chr3RHet 793287 793781 -1723726 + FW_DM LINE Jockey 1701 2194 -2498 5 591 18976 20 5 0 chr3RHet 793782 795985 -1721522 + FW_DM LINE Jockey 2479 4691 -1 5 591 13106 58 91 10 chr3RHet 795982 798434 -1719073 + DMCR1A LINE CR1 1585 4234 -236 5 591 1512 60 25 25 chr3RHet 798435 798676 -1718831 + Jockey2 LINE Jockey 3182 3422 -6 5 591 1786 74 16 0 chr3RHet 798677 798919 -1718588 + DMCR1A LINE CR1 4225 4470 0 5 591 594 149 84 0 chr3RHet 798918 799025 -1718482 - DM176_LTR LTR Gypsy -262 245 130 5 591 1242 130 153 0 chr3RHet 799087 799341 -1718166 - DM176_I LTR Gypsy -3 6417 6125 5 591 1119 183 26 30 chr3RHet 799336 799601 -1717906 + Gypsy2_LTR LTR Gypsy 33 296 -57 5 591 10346 141 92 12 chr3RHet 799666 801649 -1715858 - DM176_I LTR Gypsy -301 6119 3979 5 591 2020 149 145 7 chr3RHet 801633 802046 -1715461 - DM176_I LTR Gypsy -2546 3874 3405 5 591 2359 111 74 5 chr3RHet 802058 802437 -1715070 - DM176_I LTR Gypsy -3528 2892 2488 5 591 21 57 0 0 chr3RHet 803158 803193 -1714314 + AT_rich Low_complexity Low_complexity 1 35 0 5 591 26 50 0 0 chr3RHet 803410 803450 -1714057 + AT_rich Low_complexity Low_complexity 1 40 0 5 591 256 247 13 25 chr3RHet 803998 804077 -1713430 - IDEFIX_I LTR Gypsy -2096 3532 3455 5 591 28 0 0 0 chr3RHet 804185 804213 -1713294 + AT_rich Low_complexity Low_complexity 1 28 0 5 591 583 292 60 39 chr3RHet 804674 805009 -1712498 - Gypsy4_I LTR Gypsy -2815 3473 3132 5 591 469 178 19 0 chr3RHet 805339 805446 -1712061 - TLD2 Unknown Unknown -24 194 86 5 591 22 0 0 0 chr3RHet 805446 805468 -1712039 + AT_rich Low_complexity Low_complexity 1 22 0 5 591 2220 145 28 5 chr3RHet 805468 805856 -1711651 - Invader1_LTR LTR Gypsy 0 423 27 5 591 40813 15 0 5 chr3RHet 805866 810582 -1706925 - FW_DM LINE Jockey 0 4692 1 5 591 2515 117 73 7 chr3RHet 810633 811072 -1706435 - Invader1_I LTR Gypsy 0 3186 2719 5 591 560 346 49 31 chr3RHet 811260 811836 -1705671 - MICROPIA_I LTR Gypsy -2936 1540 955 5 591 2062 143 48 5 chr3RHet 812040 812406 -1705101 - Invader1_LTR LTR Gypsy 0 423 42 5 591 8276 45 11 46 chr3RHet 812406 813551 -1703956 - PROTOP_A DNA P 0 1105 1 5 591 299 94 0 117 chr3RHet 813551 813610 -1703897 - Invader1_LTR LTR Gypsy -371 52 1 5 591 1939 43 43 0 chr3RHet 813610 813865 -1703642 - Gypsy11_LTR LTR Gypsy -186 266 1 5 591 2604 254 8 26 chr3RHet 813878 814073 -1703434 - TOM_I LTR Gypsy -527 5585 5393 5 591 195 42 0 0 chr3RHet 814073 814097 -1703410 + (ATGTG)n Simple_repeat Simple_repeat 1 24 0 5 591 2604 254 8 26 chr3RHet 814097 814666 -1702841 - TOM_I LTR Gypsy -720 5392 4835 5 591 355 241 35 0 chr3RHet 814676 814763 -1702744 - DM297_I LTR Gypsy -2003 4164 4075 5 591 6462 222 52 5 chr3RHet 814751 816279 -1701228 - TOM_I LTR Gypsy -2172 3940 2341 5 591 3002 269 95 65 chr3RHet 816335 818221 -1699286 - TOM_I LTR Gypsy -4170 1942 1 5 591 1323 41 0 6 chr3RHet 818221 818392 -1699115 - DMTOM1_LTR LTR Gypsy 0 410 241 5 591 9219 27 2 1 chr3RHet 818392 819496 -1698011 - PROTOP_A DNA P 0 1105 1 5 591 1921 62 15 0 chr3RHet 819496 819740 -1697767 - DMTOM1_LTR LTR Gypsy -162 248 1 5 591 435 134 104 26 chr3RHet 819947 820062 -1697445 + Gypsy6_LTR LTR Gypsy 155 278 -129 5 591 1015 88 61 0 chr3RHet 820065 820212 -1697295 - DNAREP1_DM LINE Penelope -438 156 1 5 591 4140 58 148 12 chr3RHet 820485 821326 -1696181 + TRANSIB3 DNA Transib 54 1009 -1874 5 591 2067 63 42 5 chr3RHet 821324 821702 -1695805 + TRANSIB3 DNA Transib 2391 2883 0 5 591 493 214 51 0 chr3RHet 821717 821834 -1695673 + DMCR1A LINE CR1 447 569 -3901 5 591 357 306 34 71 chr3RHet 821934 822201 -1695306 - ROO_I LTR Pao -5597 2659 2403 5 591 233 238 131 0 chr3RHet 822403 822487 -1695020 - ROO_I LTR Pao -6239 2017 1923 5 591 7553 93 24 14 chr3RHet 822600 823762 -1693745 - I_DM LINE I -1505 4726 3553 5 591 4348 91 20 0 chr3RHet 823782 824432 -1693075 - I_DM LINE I -3311 2920 2258 5 591 986 128 6 6 chr3RHet 824425 824590 -1692917 - I_DM LINE I -4294 1937 1773 5 591 4994 167 81 109 chr3RHet 824590 826227 -1691280 - Gypsy12A_LTR LTR Gypsy 0 2280 691 5 591 424 158 0 73 chr3RHet 826257 826339 -1691168 - Gypsy12_LTR LTR Gypsy -2260 76 1 5 591 5540 117 40 14 chr3RHet 826338 827172 -1690335 - Gypsy12_I LTR Gypsy 0 5546 4692 5 591 1901 125 112 3 chr3RHet 827160 827472 -1690035 - Gypsy12_I LTR Gypsy -1334 4212 3867 5 591 4896 111 32 1 chr3RHet 827468 828188 -1689319 - Gypsy12_I LTR Gypsy -2189 3357 2616 5 591 1523 65 25 0 chr3RHet 828189 828389 -1689118 - Invader2_LTR LTR Gypsy -61 205 1 5 591 14635 29 2 2 chr3RHet 828389 830214 -1687293 - Invader2_I LTR Gypsy 0 4592 2769 5 591 5680 23 9 3 chr3RHet 830212 830911 -1686596 - Invader2_I LTR Gypsy -2017 2575 1873 5 591 7823 53 62 13 chr3RHet 830898 831989 -1685518 - Invader2_I LTR Gypsy -3373 1219 75 5 591 27383 0 0 0 chr3RHet 831937 835151 -1682356 - DOC LINE Jockey 0 4725 1512 5 591 677 46 0 0 chr3RHet 835153 835240 -1682267 - Invader2_I LTR Gypsy -4452 140 54 5 591 2975 210 66 119 chr3RHet 835241 837110 -1680397 - Gypsy12A_LTR LTR Gypsy -531 1749 34 5 591 10437 70 21 20 chr3RHet 837106 838736 -1678771 - I_DM LINE I -4497 1734 103 5 591 4457 35 91 2 chr3RHet 840041 840645 -1676862 + QUASIMODO_LTR LTR Gypsy 1 658 0 5 591 12273 51 24 4 chr3RHet 840645 842322 -1675185 + QUASIMODO_I LTR Gypsy 1 1712 -4348 5 591 22064 61 28 10 chr3RHet 842324 845661 -1671846 + QUASIMODO_I LTR Gypsy 1568 5392 -668 5 591 3528 0 0 0 chr3RHet 845661 846060 -1671447 + BLOOD_LTR LTR Gypsy 1 399 0 5 591 56565 0 0 0 chr3RHet 846060 852674 -1664833 + BLOOD_I LTR Gypsy 1 6613 0 5 591 3528 0 0 0 chr3RHet 852674 853073 -1664434 + BLOOD_LTR LTR Gypsy 1 399 0 5 591 1266 23 0 0 chr3RHet 853073 853245 -1664262 + QUASIMODO_I LTR Gypsy 5389 5560 -500 5 591 4279 25 50 0 chr3RHet 853245 853809 -1663698 - PROTOP_A DNA P 0 1105 514 5 591 43309 8 9 0 chr3RHet 853809 858924 -1658583 + DMRT1A LINE R1 1 5160 -23 5 591 1477 65 14 14 chr3RHet 858918 859135 -1658372 + QUASIMODO_LTR LTR Gypsy 442 658 0 5 591 4302 38 88 22 chr3RHet 860644 861267 -1656240 - TRANSIB2 DNA Transib -633 2211 1548 5 591 3328 70 68 4 chr3RHet 861265 861767 -1655740 - TRANSIB2 DNA Transib -1494 1350 817 5 591 1563 42 0 14 chr3RHet 861768 861985 -1655522 - TRANSIB2 DNA Transib -2622 222 9 5 591 315 356 50 6 chr3RHet 862918 863099 -1654408 + OSVALDO_I LTR Gypsy 2027 2215 -4438 5 591 21 57 0 0 chr3RHet 863194 863229 -1654278 + AT_rich Low_complexity Low_complexity 1 35 0 5 591 318 254 55 0 chr3RHet 863713 863823 -1653684 - MICROPIA_LTR LTR Gypsy -91 385 270 5 591 471 256 130 74 chr3RHet 863906 864299 -1653208 - MICROPIA_I LTR Gypsy -12 4464 4050 5 591 852 223 248 3 chr3RHet 864373 864688 -1652819 - MICROPIA_I LTR Gypsy -852 3624 3233 5 591 348 194 207 7 chr3RHet 864672 864807 -1652700 - MICROPIA_I LTR Gypsy -1570 2906 2745 5 591 6563 85 25 11 chr3RHet 864959 866013 -1651494 + Gypsy11_I LTR Gypsy 1032 2099 -1425 5 591 352 100 100 0 chr3RHet 866058 866118 -1651389 + Gypsy11_I LTR Gypsy 2266 2331 -1193 5 591 22812 38 44 7 chr3RHet 866129 869147 -1648360 + DMCR1A LINE CR1 1 3128 -1342 5 591 13025 50 37 1 chr3RHet 869146 871931 -1645576 + STALKER4_I LTR Gypsy 2562 5447 -1083 5 591 2158 51 0 26 chr3RHet 871927 872231 -1645276 + STALKER4_I LTR Gypsy 5692 5987 -543 5 591 376 61 88 29 chr3RHet 872260 872362 -1645145 + Gypsy11_I LTR Gypsy 3368 3475 -49 5 591 1154 91 223 5 chr3RHet 872411 872630 -1644877 + Gypsy11_LTR LTR Gypsy 1 267 -185 5 591 1611 121 77 34 chr3RHet 872630 872982 -1644525 - ROVER-LTR_DM LTR Gypsy 0 367 1 5 591 1077 116 16 16 chr3RHet 872982 873158 -1644349 + Gypsy11_LTR LTR Gypsy 277 452 0 5 591 306 0 0 0 chr3RHet 873158 873192 -1644315 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 591 1270 110 11 105 chr3RHet 873787 874072 -1643435 - BATUMI_LTR LTR Pao 0 272 15 5 591 1046 72 7 13 chr3RHet 874097 874252 -1643255 - BATUMI_I LTR Pao 0 7963 7810 5 591 1131 66 0 6 chr3RHet 874255 874423 -1643084 - BATUMI_I LTR Pao -493 7470 7304 5 591 7247 150 63 8 chr3RHet 874459 876225 -1641282 - BATUMI_I LTR Pao -668 7246 5105 5 591 355 183 62 31 chr3RHet 876607 876703 -1640804 - Gypsy5_I LTR Gypsy 0 6509 6411 5 591 3729 326 49 32 chr3RHet 877295 881433 -1636074 - Gypsy5_I LTR Gypsy -925 5584 1376 5 591 426 348 13 13 chr3RHet 881517 881820 -1635687 - Gypsy5_I LTR Gypsy -5713 796 494 5 591 811 285 9 12 chr3RHet 881872 882199 -1635308 - Gypsy5_I LTR Gypsy -3961 2548 2223 5 591 2209 32 46 0 chr3RHet 882513 882798 -1634709 - Invader3_LTR LTR Gypsy 0 298 1 5 591 40348 12 13 1 chr3RHet 882798 887628 -1629879 - Invader3_I LTR Gypsy 0 4888 1 5 591 2224 39 42 0 chr3RHet 887628 887914 -1629593 - Invader3_LTR LTR Gypsy 0 298 1 5 591 224 233 33 11 chr3RHet 888176 888267 -1629240 + (TTTA)n Simple_repeat Simple_repeat 2 94 0 5 591 207 261 0 0 chr3RHet 888400 888469 -1629038 + T-rich Low_complexity Low_complexity 1 69 0 5 591 1696 15 0 51 chr3RHet 888966 889181 -1628326 - BATUMI_I LTR Pao -2855 5108 4905 5 591 21960 65 26 16 chr3RHet 889175 892321 -1625186 + DOC2_DM LINE Jockey 341 3516 -1224 5 591 180 0 0 0 chr3RHet 892849 892869 -1624638 + (A)n Simple_repeat Simple_repeat 1 20 0 5 591 270 337 50 40 chr3RHet 894622 894820 -1622687 + NOMAD_I LTR Gypsy 3158 3357 -3215 5 591 293 270 11 11 chr3RHet 895087 895177 -1622330 + BLASTOPIA_I LTR Gypsy 2646 2735 -1746 5 591 332 361 39 39 chr3RHet 896161 896420 -1621087 + Invader3_I LTR Gypsy 3888 4193 -695 5 591 6539 1 0 0 chr3RHet 897152 897856 -1619651 + DOC2_DM LINE Jockey 3556 4259 -534 5 591 1675 19 68 0 chr3RHet 897854 898060 -1619447 + DOC2_DM LINE Jockey 4574 4793 0 5 591 24991 48 53 16 chr3RHet 898131 901436 -1616071 - BATUMI_I LTR Pao -3643 4320 895 5 591 276 24 23 45 chr3RHet 901435 901479 -1616028 - BATUMI_I LTR Pao -914 7049 7007 5 591 254 148 19 0 chr3RHet 901486 901540 -1615967 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 591 1257 104 0 0 chr3RHet 901612 901785 -1615722 + DNAREP1_DM LINE Penelope 313 485 -109 5 591 645 183 3 101 chr3RHet 902248 902439 -1615068 - Gypsy8_LTR LTR Gypsy 0 304 70 5 591 387 54 36 0 chr3RHet 902513 902569 -1614938 + DNAREP1_DM LINE Penelope 537 594 0 5 591 1249 211 33 35 chr3RHet 902567 902935 -1614572 + DNAREP1_DM LINE Penelope 2 368 -226 5 591 27 49 0 0 chr3RHet 902988 903029 -1614478 + AT_rich Low_complexity Low_complexity 1 41 0 5 591 6221 48 33 6 chr3RHet 903065 903849 -1613658 - DOC3_DM LINE Jockey 0 4740 3936 5 591 8700 48 72 6 chr3RHet 903828 905544 -1611963 - DOC3_DM LINE Jockey -1079 3661 1785 5 591 932 78 0 15 chr3RHet 905524 905655 -1611852 - DOC3_DM LINE Jockey -3390 1350 1222 5 591 13502 61 21 0 chr3RHet 905654 907384 -1610123 - DMRT1C LINE R1 0 5443 3678 5 591 5111 88 18 0 chr3RHet 907377 908090 -1609417 - DMRT1C LINE R1 -2084 3359 2634 5 591 1696 61 0 0 chr3RHet 908151 908365 -1609142 - DMRT1C LINE R1 -2810 2633 2420 5 591 6489 51 68 9 chr3RHet 908369 909295 -1608212 - DOC3_DM LINE Jockey -3635 1105 31 5 591 725 253 69 52 chr3RHet 909341 909629 -1607878 - TOM_I LTR Gypsy -205 5907 5615 5 591 389 311 24 6 chr3RHet 910463 910628 -1606879 - DIVER2_I LTR Pao -2279 1868 1701 5 591 342 148 0 0 chr3RHet 910740 910794 -1606713 - DNAREP1_DM LINE Penelope -229 365 312 5 591 285 314 0 0 chr3RHet 911066 911171 -1606336 + (CGG)n Simple_repeat Simple_repeat 3 107 0 5 591 340 213 161 107 chr3RHet 911171 911413 -1606094 - Gypsy8_I LTR Gypsy -1153 3194 2940 5 591 330 73 273 0 chr3RHet 911558 911613 -1605894 + DNAREP1_DM LINE Penelope 525 594 0 5 591 9309 28 14 0 chr3RHet 911627 912717 -1604790 - PROTOP_A DNA P 0 1105 1 5 591 380 142 10 132 chr3RHet 912717 912850 -1604657 - Gypsy8_LTR LTR Gypsy -8 296 91 5 591 432 39 0 0 chr3RHet 912919 912971 -1604536 + DNAREP1_DM LINE Penelope 543 594 0 5 591 260 155 31 108 chr3RHet 912969 913034 -1604473 + DNAREP1_DM LINE Penelope 2 61 -533 5 591 269 362 131 4 chr3RHet 913302 913538 -1603969 - NOMAD_I LTR Gypsy -3782 2790 2525 5 591 322 263 82 72 chr3RHet 913975 914233 -1603274 + Gypsy6_I LTR Gypsy 1270 1339 -5673 5 73 12718 269 72 37 chr3RHet 914307 918773 -1598734 + Gypsy6_I LTR Gypsy 1916 7010 -2 5 592 3570 43 2 0 chr3RHet 918777 919196 -1598311 + Gypsy6A_LTR LTR Gypsy 1 420 0 5 592 366 198 74 41 chr3RHet 919403 919524 -1597983 + DNAREP1_DM LINE Penelope 194 318 -276 5 592 1689 32 135 4 chr3RHet 919525 919777 -1597730 + DMCR1A LINE CR1 2 286 -4184 5 592 13376 58 58 12 chr3RHet 919780 920962 -1596545 + DMCR1A LINE CR1 499 1770 -2700 5 592 612 0 0 0 chr3RHet 920962 921030 -1596477 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 592 13376 58 58 12 chr3RHet 921030 921619 -1595888 + DMCR1A LINE CR1 1771 2351 -2119 5 592 216 143 0 0 chr3RHet 921622 921664 -1595843 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 592 1716 67 3 3 chr3RHet 921665 921952 -1595555 - ROOA_I LTR Pao -1844 5005 4644 5 592 7393 52 56 1 chr3RHet 921949 923279 -1594228 + DMCR1A LINE CR1 2950 4351 -119 5 592 1749 159 27 36 chr3RHet 923275 923824 -1593683 + DNAREP1_DM LINE Penelope 86 486 -108 5 592 1093 182 60 14 chr3RHet 923824 924041 -1593466 - DMLTR5 LTR Gypsy 0 266 40 5 592 351 141 26 66 chr3RHet 924163 924239 -1593268 - HMSBEAGLE_I LTR Gypsy -124 6405 6333 5 592 4271 25 2 0 chr3RHet 924324 924838 -1592669 - Invader2_I LTR Gypsy -315 4277 3763 5 592 9080 36 70 0 chr3RHet 924836 927078 -1590429 - Invader2_I LTR Gypsy -1021 3571 1173 5 592 5119 35 9 0 chr3RHet 927075 927708 -1589799 - Invader2_I LTR Gypsy -3952 640 2 5 592 790 75 252 9 chr3RHet 927724 927938 -1589569 - Invader2_LTR LTR Gypsy 0 266 1 5 592 1159 152 312 10 chr3RHet 927938 928236 -1589271 - HMSBEAGLE_I LTR Gypsy -355 6174 5787 5 592 2088 111 25 0 chr3RHet 928238 928553 -1588954 - HMSBEAGLE_I LTR Gypsy -901 5628 5306 5 592 7525 92 23 31 chr3RHet 928566 930529 -1586978 - HMSBEAGLE_I LTR Gypsy -3356 3173 1123 5 592 862 112 56 6 chr3RHet 930627 930807 -1586700 - HMSBEAGLE_I LTR Gypsy -5819 710 522 5 592 646 24 0 24 chr3RHet 930809 930894 -1586613 - Invader2_I LTR Gypsy -3337 1255 1173 5 592 5117 36 8 6 chr3RHet 930891 931529 -1585978 - Invader2_I LTR Gypsy -3952 640 2 5 592 797 78 243 0 chr3RHet 931545 931759 -1585748 - Invader2_LTR LTR Gypsy 0 266 1 5 592 1226 149 301 13 chr3RHet 931759 932058 -1585449 - HMSBEAGLE_I LTR Gypsy -356 6173 5787 5 592 2096 105 29 0 chr3RHet 932060 932374 -1585133 - HMSBEAGLE_I LTR Gypsy -901 5628 5306 5 592 7529 94 23 30 chr3RHet 932387 934349 -1583158 - HMSBEAGLE_I LTR Gypsy -3356 3173 1122 5 592 1048 118 47 5 chr3RHet 934447 934659 -1582848 - HMSBEAGLE_I LTR Gypsy -5819 710 490 5 592 245 243 0 14 chr3RHet 934767 934838 -1582669 - TIRANT_LTR LTR Gypsy -107 310 241 5 592 266 105 0 0 chr3RHet 934836 934874 -1582633 - HMSBEAGLE_I LTR Gypsy -132 6397 6360 5 592 777 108 0 129 chr3RHet 935083 935253 -1582254 - HMSBEAGLE_I LTR Gypsy -163 6366 6219 5 592 1837 77 25 55 chr3RHet 935286 935560 -1581947 - Invader2_LTR LTR Gypsy 0 266 1 5 592 6937 20 0 6 chr3RHet 935560 936395 -1581112 - Invader2_I LTR Gypsy 0 4592 3763 5 592 8847 27 72 1 chr3RHet 936393 937980 -1579527 - Invader2_I LTR Gypsy -1021 3571 1873 5 592 9298 32 49 11 chr3RHet 937967 939141 -1578366 - Invader2_I LTR Gypsy -3373 1219 2 5 592 811 74 243 0 chr3RHet 939157 939371 -1578136 - Invader2_LTR LTR Gypsy 0 266 1 5 592 688 154 317 10 chr3RHet 939371 939660 -1577847 - HMSBEAGLE_I LTR Gypsy -355 6174 5797 5 592 2340 103 24 0 chr3RHet 939672 940012 -1577495 - HMSBEAGLE_I LTR Gypsy -901 5628 5281 5 592 7555 94 23 30 chr3RHet 940022 941984 -1575523 - HMSBEAGLE_I LTR Gypsy -3356 3173 1122 5 592 1048 118 47 5 chr3RHet 942082 942294 -1575213 - HMSBEAGLE_I LTR Gypsy -5819 710 490 5 592 266 105 0 0 chr3RHet 942471 942509 -1574998 - HMSBEAGLE_I LTR Gypsy -132 6397 6360 5 592 777 108 0 129 chr3RHet 942718 942888 -1574619 - HMSBEAGLE_I LTR Gypsy -163 6366 6219 5 592 1837 77 25 55 chr3RHet 942921 943195 -1574312 - Invader2_LTR LTR Gypsy 0 266 1 5 592 6850 24 1 4 chr3RHet 943195 944027 -1573480 - Invader2_I LTR Gypsy 0 4592 3763 5 592 8297 28 60 2 chr3RHet 944025 945630 -1571877 - Invader2_I LTR Gypsy -1021 3571 1873 5 592 8698 35 48 10 chr3RHet 945617 946791 -1570716 - Invader2_I LTR Gypsy -3373 1219 2 5 592 1780 77 27 0 chr3RHet 946807 947066 -1570441 - Invader2_LTR LTR Gypsy 0 266 1 5 592 632 163 313 10 chr3RHet 947066 947356 -1570151 - HMSBEAGLE_I LTR Gypsy -355 6174 5797 5 592 2111 109 24 0 chr3RHet 947367 947707 -1569800 - HMSBEAGLE_I LTR Gypsy -901 5628 5281 5 592 4781 95 32 0 chr3RHet 947719 948433 -1569074 - HMSBEAGLE_I LTR Gypsy -3358 3171 2435 5 592 228 118 0 0 chr3RHet 948482 948516 -1568991 - HMSBEAGLE_I LTR Gypsy -132 6397 6364 5 592 2820 128 61 53 chr3RHet 948716 949346 -1568161 - HMSBEAGLE_I LTR Gypsy -163 6366 5732 5 592 2411 19 148 0 chr3RHet 949346 949494 -1568013 - Stalker3_LTR LTR Gypsy 0 372 225 5 592 207 0 0 0 chr3RHet 949494 949517 -1567990 + (CTTAT)n Simple_repeat Simple_repeat 2 24 0 5 592 2411 19 148 0 chr3RHet 949517 949692 -1567815 - Stalker3_LTR LTR Gypsy -148 224 2 5 592 337 51 88 6 chr3RHet 949692 949773 -1567734 - STALKER4_I LTR Gypsy 0 6530 6491 5 592 39 0 0 0 chr3RHet 949788 949827 -1567680 + AT_rich Low_complexity Low_complexity 1 39 0 5 592 2297 0 0 0 chr3RHet 949858 950134 -1567373 - Copia_LTR LTR Copia 0 276 1 5 592 4483 2 0 0 chr3RHet 950134 950655 -1566852 - Copia_I LTR Copia 0 4593 4073 5 592 24017 2 1 0 chr3RHet 965655 968438 -1549069 + DOC LINE Jockey 1938 4722 -3 5 592 3036 131 80 15 chr3RHet 968493 969105 -1548402 - Stalker2_I LTR Gypsy -6509 893 242 5 592 291 49 0 0 chr3RHet 969303 969344 -1548163 - Stalker2_I LTR Gypsy -7361 41 1 5 592 2745 23 63 0 chr3RHet 969344 969492 -1548015 - Stalker3_LTR LTR Gypsy 0 372 225 5 592 207 0 0 0 chr3RHet 969492 969515 -1547992 + (CTTAT)n Simple_repeat Simple_repeat 2 24 0 5 592 2745 23 63 0 chr3RHet 969515 969716 -1547791 - Stalker3_LTR LTR Gypsy -148 224 2 5 592 3151 72 43 13 chr3RHet 969716 970180 -1547327 - HMSBEAGLE_I LTR Gypsy -794 5735 5258 5 592 3850 90 4 0 chr3RHet 970147 970692 -1546815 - HMSBEAGLE_I LTR Gypsy -1691 4838 4292 5 592 8481 42 7 1 chr3RHet 970679 971809 -1545698 - Invader2_I LTR Gypsy -2283 2309 1173 5 592 4794 35 9 0 chr3RHet 971806 972439 -1545068 - Invader2_I LTR Gypsy -3952 640 2 5 592 1465 93 42 4 chr3RHet 972455 972693 -1544814 - Invader2_LTR LTR Gypsy 0 266 20 5 592 273 152 0 0 chr3RHet 972702 972748 -1544759 - HMSBEAGLE_I LTR Gypsy -988 5541 5496 5 592 4659 100 54 39 chr3RHet 972751 973693 -1543814 - HMSBEAGLE_I LTR Gypsy -4026 2503 1449 5 592 866 120 180 52 chr3RHet 973699 973893 -1543614 - HMSBEAGLE_I LTR Gypsy -6043 486 268 5 592 465 188 10 10 chr3RHet 973891 973993 -1543514 - DMLTR5 LTR Gypsy -120 146 45 5 592 548 138 0 0 chr3RHet 974243 974337 -1543170 + DNAREP1_DM LINE Penelope 501 594 0 5 592 5678 83 81 3 chr3RHet 974385 975356 -1542151 + G5_DM LINE Jockey 407 1453 -3403 5 592 353 0 0 0 chr3RHet 975354 975394 -1542113 + G5_DM LINE Jockey 2249 2288 -2568 5 592 4070 40 4 0 chr3RHet 975396 975915 -1541592 + G5_DM LINE Jockey 2654 3174 -1682 5 592 1483 50 50 0 chr3RHet 975921 976122 -1541385 + G5_DM LINE Jockey 3333 3543 -1313 5 592 1053 51 29 0 chr3RHet 976115 976253 -1541254 + G5_DM LINE Jockey 3751 3892 -964 5 592 1389 75 154 0 chr3RHet 976252 976492 -1541015 + G5_DM LINE Jockey 4579 4855 -1 5 592 6606 60 112 5 chr3RHet 976558 977772 -1539735 + TRANSIB3 DNA Transib 2 1345 -1538 5 592 226 114 68 0 chr3RHet 977775 977819 -1539688 + TRANSIB3 DNA Transib 1591 1637 -1246 5 592 1592 39 0 0 chr3RHet 977819 978022 -1539485 - FROGGER_LTR LTR Copia 0 203 1 5 592 1944 20 0 42 chr3RHet 978022 978283 -1539224 - FROGGER_I LTR Copia 0 2077 1828 5 592 10507 31 12 10 chr3RHet 978284 979623 -1537884 - FROGGER_I LTR Copia -447 1630 289 5 592 1214 284 43 32 chr3RHet 979795 980620 -1536887 - FROGGER_I LTR Copia -1796 281 129 5 592 231 300 0 0 chr3RHet 981306 981386 -1536121 - Copia2_I LTR Copia -3490 672 593 5 592 1081 37 0 0 chr3RHet 981879 982015 -1535492 - FROGGER_I LTR Copia -1941 136 1 5 592 811 29 0 0 chr3RHet 982015 982118 -1535389 - FROGGER_LTR LTR Copia 0 203 101 5 592 5113 337 37 33 chr3RHet 983581 987648 -1529859 + GTWIN_I LTR Gypsy 804 4887 -1534 5 592 4451 334 18 11 chr3RHet 1002751 1005090 -1512417 + GTWIN_I LTR Gypsy 2533 4887 -1534 5 592 868 19 0 0 chr3RHet 1006488 1006592 -1510915 - FROGGER_LTR LTR Copia -99 104 1 5 592 3089 90 86 0 chr3RHet 1006593 1007083 -1510424 + TRANSIB3 DNA Transib 1632 2163 -720 5 592 1000 77 45 0 chr3RHet 1007083 1007239 -1510268 + ROVER-LTR_DM LTR Gypsy 1 163 -204 5 592 2267 350 24 14 chr3RHet 1007250 1008793 -1508714 + GTWIN_I LTR Gypsy 3329 4887 -1534 5 592 868 19 0 0 chr3RHet 1010191 1010295 -1507212 - FROGGER_LTR LTR Copia -99 104 1 5 592 3089 90 86 0 chr3RHet 1010296 1010786 -1506721 + TRANSIB3 DNA Transib 1632 2163 -720 5 592 1830 117 42 25 chr3RHet 1010786 1011147 -1506360 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 592 355 190 13 0 chr3RHet 1011147 1011226 -1506281 + ROVER-I_DM LTR Gypsy 1 80 -6504 5 592 217 308 6 19 chr3RHet 1011359 1011518 -1505989 + A-rich Low_complexity Low_complexity 2 158 0 5 592 17159 220 36 13 chr3RHet 1011538 1016081 -1501426 + ROVER-I_DM LTR Gypsy 284 4933 -1651 5 592 705 24 0 0 chr3RHet 1016077 1016162 -1501345 - PROTOP_A DNA P -1020 85 1 5 592 1005 152 81 20 chr3RHet 1016162 1016410 -1501097 + ROVER-I_DM LTR Gypsy 6322 6584 0 5 592 1821 117 42 25 chr3RHet 1016410 1016771 -1500736 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 592 22 35 0 0 chr3RHet 1016882 1016911 -1500596 + AT_rich Low_complexity Low_complexity 1 29 0 5 592 238 161 18 18 chr3RHet 1017340 1017397 -1500110 + DMCR1A LINE CR1 126 182 -4288 5 592 302 236 110 0 chr3RHet 1017401 1017528 -1499979 + DMCR1A LINE CR1 352 492 -3978 5 592 234 289 0 0 chr3RHet 1017875 1017927 -1499580 + (CGGA)n Simple_repeat Simple_repeat 4 55 0 5 592 279 200 0 0 chr3RHet 1017928 1017983 -1499524 + DNAREP1_DM LINE Penelope 432 486 -108 5 592 24 32 0 0 chr3RHet 1018004 1018035 -1499472 + AT_rich Low_complexity Low_complexity 1 31 0 5 592 9062 22 0 0 chr3RHet 1018318 1019423 -1498084 - PROTOP_A DNA P 0 1105 1 5 592 623 318 32 19 chr3RHet 1019762 1020140 -1497367 - DIVER2_I LTR Pao -788 3359 2977 5 592 416 334 47 41 chr3RHet 1021509 1021852 -1495655 - DIVER2_I LTR Pao -1838 2309 1965 5 592 747 122 9 0 chr3RHet 1022095 1022210 -1495297 - G3_DM LINE Jockey -4026 579 464 5 592 2495 115 73 43 chr3RHet 1022249 1022712 -1494795 - G3_DM LINE Jockey -4026 579 103 5 592 8331 22 0 0 chr3RHet 1023378 1024399 -1493108 - PROTOP_A DNA P -84 1021 1 5 592 623 318 32 19 chr3RHet 1024738 1025116 -1492391 - DIVER2_I LTR Pao -788 3359 2977 5 592 416 334 47 41 chr3RHet 1026485 1026828 -1490679 - DIVER2_I LTR Pao -1838 2309 1965 5 592 747 122 9 0 chr3RHet 1027071 1027186 -1490321 - G3_DM LINE Jockey -4026 579 464 5 592 2495 115 73 43 chr3RHet 1027225 1027688 -1489819 - G3_DM LINE Jockey -4026 579 103 5 592 1144 97 0 0 chr3RHet 1028496 1028661 -1488846 - DMRT1C LINE R1 -4373 1070 906 5 592 545 80 397 0 chr3RHet 1028661 1028812 -1488695 - DMRT1C LINE R1 -4743 700 490 5 592 13817 59 38 1 chr3RHet 1028818 1030771 -1486736 - I_DM LINE I -2199 4032 2006 5 592 3467 33 2 0 chr3RHet 1030771 1031198 -1486309 - ROO_LTR LTR Pao 0 428 1 5 592 11772 23 9 15 chr3RHet 1031198 1032719 -1484788 - ROO_I LTR Pao 0 8256 6745 5 592 45310 15 30 5 chr3RHet 1032707 1038380 -1479127 - ROO_I LTR Pao -2442 5814 1 5 592 3464 33 2 0 chr3RHet 1038380 1038807 -1478700 - ROO_LTR LTR Pao 0 428 1 5 592 12730 62 9 19 chr3RHet 1038807 1040748 -1476759 - I_DM LINE I -4221 2010 89 5 592 264 156 46 44 chr3RHet 1040790 1040932 -1476575 + Gypsy12A_LTR LTR Gypsy 928 1101 -1179 5 592 796 65 0 75 chr3RHet 1040955 1041088 -1476419 + Gypsy12A_LTR LTR Gypsy 2156 2278 -2 5 592 231 218 18 0 chr3RHet 1041088 1041141 -1476366 + DNAREP1_DM LINE Penelope 541 594 0 5 592 436 95 0 0 chr3RHet 1041450 1041513 -1475994 + DNAREP1_DM LINE Penelope 5 67 -527 5 592 34 0 0 0 chr3RHet 1041513 1041547 -1475960 + AT_rich Low_complexity Low_complexity 1 34 0 5 592 7258 45 3 2 chr3RHet 1041563 1042485 -1475022 - Baggins1 LINE LOA 0 5453 4531 5 592 11734 47 45 0 chr3RHet 1042481 1044030 -1473477 - Baggins1 LINE LOA -1250 4203 2585 5 592 6212 48 20 1 chr3RHet 1044028 1044827 -1472680 - Baggins1 LINE LOA -3041 2412 1599 5 592 4155 39 0 2 chr3RHet 1044811 1045349 -1472158 - Baggins1 LINE LOA -4418 1035 499 5 592 2663 34 80 0 chr3RHet 1045364 1045715 -1471792 - Baggins1 LINE LOA -5073 380 2 5 592 38 81 0 0 chr3RHet 1046214 1046301 -1471206 + AT_rich Low_complexity Low_complexity 1 87 0 5 592 28 0 0 0 chr3RHet 1046723 1046751 -1470756 + AT_rich Low_complexity Low_complexity 1 28 0 5 592 27 49 0 0 chr3RHet 1047381 1047422 -1470085 + AT_rich Low_complexity Low_complexity 1 41 0 5 592 246 103 0 0 chr3RHet 1048123 1048162 -1469345 - BARI1 DNA Tc1 -1708 42 4 5 9 3974 67 22 3 chr3RHet 1048131 1048714 -1468793 + IDEFIX_LTR LTR Gypsy 1 594 0 5 593 2724 23 17 0 chr3RHet 1048955 1049302 -1468205 - FW_DM LINE Jockey 0 4692 4340 5 593 4668 16 50 0 chr3RHet 1049294 1049870 -1467637 + G5_DM LINE Jockey 1568 2172 -2684 5 593 5022 25 0 0 chr3RHet 1049866 1050478 -1467029 + G5_DM LINE Jockey 2535 3146 -1710 5 593 32492 11 0 6 chr3RHet 1050478 1054367 -1463140 - FW_DM LINE Jockey -360 4332 466 5 593 1072 50 0 0 chr3RHet 1054647 1054786 -1462721 + IDEFIX_I LTR Gypsy 1 139 -5489 5 593 363 42 0 0 chr3RHet 1054791 1054839 -1462668 + IDEFIX_I LTR Gypsy 999 1046 -4582 5 593 500 59 0 0 chr3RHet 1054837 1054905 -1462602 + G5_DM LINE Jockey 904 971 -3885 5 593 3324 34 0 0 chr3RHet 1054900 1055309 -1462198 + G5_DM LINE Jockey 1078 1486 -3370 5 593 7096 133 67 61 chr3RHet 1055307 1056840 -1460667 + G5_DM LINE Jockey 1604 3146 -1710 5 593 34707 11 0 3 chr3RHet 1056840 1060719 -1456788 - FW_DM LINE Jockey -360 4332 466 5 593 7507 69 38 19 chr3RHet 1060946 1062026 -1455481 + IDEFIX_I LTR Gypsy 1 1048 -4580 5 593 528 71 0 0 chr3RHet 1062022 1062092 -1455415 + G5_DM LINE Jockey 904 973 -3883 5 593 16462 102 43 37 chr3RHet 1062085 1064929 -1452578 + G5_DM LINE Jockey 1 3678 -1178 5 593 20394 65 55 12 chr3RHet 1064930 1068065 -1449442 + IDEFIX_I LTR Gypsy 1252 4523 -1105 5 593 4171 8 0 61 chr3RHet 1068065 1068572 -1448935 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 2289 41 0 0 chr3RHet 1068572 1068838 -1448669 + MICROPIA_I LTR Gypsy 1 266 -4210 5 593 16137 14 2 4 chr3RHet 1068821 1070637 -1446870 + MICROPIA_I LTR Gypsy 2665 4476 0 5 593 4127 13 0 61 chr3RHet 1070637 1071144 -1446363 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 39920 9 13 9 chr3RHet 1071144 1075604 -1441903 + MICROPIA_I LTR Gypsy 1 4476 0 5 593 4171 8 0 61 chr3RHet 1075604 1076111 -1441396 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 2289 41 0 0 chr3RHet 1076111 1076377 -1441130 + MICROPIA_I LTR Gypsy 1 266 -4210 5 593 16109 14 2 4 chr3RHet 1076360 1078176 -1439331 + MICROPIA_I LTR Gypsy 2665 4476 0 5 593 4139 11 0 61 chr3RHet 1078176 1078683 -1438824 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 2266 45 0 0 chr3RHet 1078683 1078949 -1438558 + MICROPIA_I LTR Gypsy 1 266 -4210 5 593 16115 14 2 4 chr3RHet 1078932 1080748 -1436759 + MICROPIA_I LTR Gypsy 2665 4476 0 5 593 4127 13 0 61 chr3RHet 1080748 1081255 -1436252 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 40044 9 12 9 chr3RHet 1081255 1085719 -1431788 + MICROPIA_I LTR Gypsy 1 4476 0 5 593 4127 13 0 61 chr3RHet 1085719 1086226 -1431281 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 1909 87 0 0 chr3RHet 1086226 1086490 -1431017 + IDEFIX_I LTR Gypsy 4520 4783 -845 5 593 16903 11 0 4 chr3RHet 1086485 1088362 -1429145 + MICROPIA_I LTR Gypsy 2608 4476 0 5 593 4184 6 0 61 chr3RHet 1088362 1088869 -1428638 + MICROPIA_LTR LTR Gypsy 1 476 0 5 593 3838 78 17 0 chr3RHet 1088869 1089391 -1428116 + IDEFIX_I LTR Gypsy 4520 5050 -578 5 593 1355 60 194 53 chr3RHet 1089388 1089635 -1427872 + IDEFIX_LTR LTR Gypsy 313 594 0 5 593 37 39 0 0 chr3RHet 1089639 1089690 -1427817 + AT_rich Low_complexity Low_complexity 1 51 0 5 593 495 72 0 0 chr3RHet 1089976 1090045 -1427462 - TLD2 Unknown Unknown 0 218 150 5 593 23 0 0 0 chr3RHet 1090233 1090256 -1427251 + AT_rich Low_complexity Low_complexity 1 23 0 5 593 420 281 70 59 chr3RHet 1090320 1090668 -1426839 - Gypsy7_I LTR Gypsy -2921 3499 2987 5 593 930 282 86 15 chr3RHet 1090773 1091248 -1426259 + ROVER-I_DM LTR Gypsy 656 1164 -5420 5 593 544 310 53 55 chr3RHet 1091255 1091746 -1425761 + ROVER-I_DM LTR Gypsy 1393 1882 -4702 5 593 269 295 150 30 chr3RHet 1091969 1092235 -1425272 + DM176_I LTR Gypsy 1831 2128 -4292 5 593 1377 30 12 6 chr3RHet 1092207 1092374 -1425133 - TLD3 Unknown Unknown -3 169 2 5 593 8235 269 28 14 chr3RHet 1092355 1095009 -1422498 + ROVER-I_DM LTR Gypsy 2579 5269 -1315 5 593 1665 166 5 100 chr3RHet 1095004 1095423 -1422084 + DM297_I LTR Gypsy 5490 5866 -301 5 593 1792 39 0 0 chr3RHet 1095423 1095631 -1421876 + PROTOP_A DNA P 1 208 -897 5 593 4865 36 3 2 chr3RHet 1095630 1096219 -1421288 + PROTOP_A DNA P 516 1105 0 5 593 1677 163 39 0 chr3RHet 1096219 1096521 -1420986 + DM176_I LTR Gypsy 6107 6420 0 5 593 340 190 43 138 chr3RHet 1096607 1096723 -1420784 + DMTOM1_LTR LTR Gypsy 190 294 -213 5 593 514 196 124 40 chr3RHet 1096843 1097039 -1420468 + DMTOM1_LTR LTR Gypsy 284 488 -19 5 593 379 155 0 27 chr3RHet 1097030 1097103 -1420404 + DMTOM1_LTR LTR Gypsy 340 410 0 5 593 24 67 0 0 chr3RHet 1097127 1097172 -1420335 + AT_rich Low_complexity Low_complexity 1 45 0 5 593 2542 105 239 9 chr3RHet 1097191 1097637 -1419870 - QUASIMODO_LTR LTR Gypsy -110 548 1 5 593 277 111 56 0 chr3RHet 1097640 1097694 -1419813 - TLD2 Unknown Unknown -161 57 1 5 593 474 265 122 46 chr3RHet 1097653 1098025 -1419482 - Gypsy4_I LTR Gypsy -3523 2897 2352 5 593 32 43 0 0 chr3RHet 1098183 1098229 -1419278 + AT_rich Low_complexity Low_complexity 1 46 0 5 593 22 35 0 0 chr3RHet 1098402 1098431 -1419076 + AT_rich Low_complexity Low_complexity 1 29 0 5 593 200 204 0 0 chr3RHet 1098768 1098812 -1418695 + T-rich Low_complexity Low_complexity 5 48 0 5 593 3602 66 77 2 chr3RHet 1098852 1099790 -1417717 - DMCR1A LINE CR1 -458 4012 2892 5 593 8970 61 47 3 chr3RHet 1099775 1100937 -1416570 - DMCR1A LINE CR1 -1760 2710 1499 5 593 1592 112 4 4 chr3RHet 1100943 1101194 -1416313 - DMCR1A LINE CR1 -4213 257 7 5 593 23 33 0 0 chr3RHet 1101229 1101259 -1416248 + AT_rich Low_complexity Low_complexity 1 30 0 5 593 186 193 0 0 chr3RHet 1101284 1101341 -1416166 + (TTA)n Simple_repeat Simple_repeat 2 58 0 5 593 29 28 0 0 chr3RHet 1101729 1101765 -1415742 + AT_rich Low_complexity Low_complexity 1 36 0 5 593 25 51 0 0 chr3RHet 1101835 1101874 -1415633 + AT_rich Low_complexity Low_complexity 1 39 0 5 593 679 98 623 0 chr3RHet 1101988 1102175 -1415332 + DNAREP1_DM LINE Penelope 292 594 0 5 593 1145 160 37 32 chr3RHet 1102227 1102523 -1414984 + DNAREP1_DM LINE Penelope 90 332 -262 5 593 349 121 17 0 chr3RHet 1102518 1102576 -1414931 + DNAREP1_DM LINE Penelope 536 594 0 5 593 30 0 0 0 chr3RHet 1102608 1102638 -1414869 + AT_rich Low_complexity Low_complexity 1 30 0 5 593 2628 45 0 0 chr3RHet 1102640 1102948 -1414559 + DIVER2_LTR LTR Pao 1 308 -77 5 593 15184 34 63 12 chr3RHet 1103041 1104954 -1412553 + DIVER2_I LTR Pao 433 2442 -1705 5 593 14591 27 18 8 chr3RHet 1105984 1107697 -1409810 + DIVER2_I LTR Pao 2417 4147 0 5 593 3234 30 0 0 chr3RHet 1107703 1108070 -1409437 + DIVER2_LTR LTR Pao 18 384 -1 5 593 865 53 9 0 chr3RHet 1108172 1108286 -1409221 + DOC4_DM LINE Jockey 486 600 -2191 5 593 5840 56 3 3 chr3RHet 1108265 1108994 -1408513 + DOC4_DM LINE Jockey 844 1572 -1219 5 593 2267 172 16 16 chr3RHet 1109046 1109489 -1408018 + DOC4_DM LINE Jockey 5 447 -2344 5 593 9091 25 38 3 chr3RHet 1109667 1111441 -1406066 + FW3_DM LINE Jockey 1 1835 -1297 5 593 2452 31 0 0 chr3RHet 1111437 1111726 -1405781 + FW3_DM LINE Jockey 1992 2280 -852 5 593 2287 152 20 13 chr3RHet 1111748 1112375 -1405132 + DOC4_DM LINE Jockey 1154 2035 -756 5 593 7339 41 99 1 chr3RHet 1112420 1113470 -1404037 - PROTOP_B DNA P 0 1153 1 5 593 268 300 30 30 chr3RHet 1113490 1113695 -1403812 + FW_DM LINE Jockey 2407 2681 -2059 5 593 2522 0 0 0 chr3RHet 1115385 1115684 -1401823 - G6_DM LINE Jockey 0 2042 1744 5 593 13970 2 0 0 chr3RHet 1115685 1117317 -1400190 - G6_DM LINE Jockey -410 1632 1 5 593 1274 63 102 0 chr3RHet 1118313 1118515 -1398992 - DOC5_DM LINE Jockey -4339 343 121 5 593 633 124 38 0 chr3RHet 1118515 1118620 -1398887 - Invader1_LTR LTR Gypsy 0 423 315 5 593 2334 98 19 3 chr3RHet 1118639 1119006 -1398501 - Invader1_I LTR Gypsy -95 3091 2719 5 593 680 0 119 0 chr3RHet 1119151 1119538 -1397969 + (TTA)n Simple_repeat Simple_repeat 1 433 0 5 593 1826 123 136 5 chr3RHet 1119768 1120137 -1397370 + DNAREP1_DM LINE Penelope 178 594 0 5 593 1162 92 6 0 chr3RHet 1120135 1120309 -1397198 - TC1-2_DM DNA Tc1 -238 1406 1232 5 593 2731 90 82 8 chr3RHet 1120350 1120863 -1396644 - I_DM LINE I -4301 1930 1380 5 593 4995 114 104 3 chr3RHet 1120860 1121812 -1395695 - I_DM LINE I -5085 1146 99 5 593 8500 58 63 1 chr3RHet 1121867 1123042 -1394465 + Baggins1 LINE LOA 4205 5452 -1 5 593 3820 132 123 3 chr3RHet 1123072 1124056 -1393451 - I_DM LINE I -758 5473 4372 5 593 2044 178 43 6 chr3RHet 1124063 1124549 -1392958 - I_DM LINE I -2266 3965 3462 5 593 1830 120 136 5 chr3RHet 1124681 1125050 -1392457 + DNAREP1_DM LINE Penelope 178 594 0 5 593 1162 92 6 0 chr3RHet 1125048 1125222 -1392285 - TC1-2_DM DNA Tc1 -238 1406 1232 5 593 2754 88 82 8 chr3RHet 1125263 1125776 -1391731 - I_DM LINE I -4301 1930 1380 5 593 6062 70 80 2 chr3RHet 1125773 1126745 -1390762 - I_DM LINE I -5085 1146 99 5 593 8587 58 58 1 chr3RHet 1126800 1127980 -1389527 + Baggins1 LINE LOA 4205 5452 -1 5 593 4331 102 123 3 chr3RHet 1128010 1128995 -1388512 - I_DM LINE I -758 5473 4371 5 593 3048 95 30 0 chr3RHet 1129014 1129489 -1388018 - I_DM LINE I -2281 3950 3462 5 593 1783 115 171 3 chr3RHet 1129621 1129978 -1387529 + DNAREP1_DM LINE Penelope 178 594 0 5 593 1180 86 6 0 chr3RHet 1129976 1130150 -1387357 - TC1-2_DM DNA Tc1 -238 1406 1232 5 593 21 0 0 0 chr3RHet 1130310 1130331 -1387176 + AT_rich Low_complexity Low_complexity 1 21 0 5 593 37 0 0 0 chr3RHet 1130395 1130432 -1387075 + AT_rich Low_complexity Low_complexity 1 37 0 5 593 303 28 0 0 chr3RHet 1131125 1131161 -1386346 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 593 27 29 0 0 chr3RHet 1134506 1134540 -1382967 + AT_rich Low_complexity Low_complexity 1 34 0 5 593 21 0 0 0 chr3RHet 1134793 1134814 -1382693 + AT_rich Low_complexity Low_complexity 1 21 0 5 593 27 81 0 0 chr3RHet 1135059 1135121 -1382386 + AT_rich Low_complexity Low_complexity 1 62 0 5 593 429 168 481 13 chr3RHet 1135591 1135743 -1381764 + DMCR1A LINE CR1 1246 1468 -3002 5 593 692 180 36 0 chr3RHet 1135979 1136146 -1381361 + DNAREP1_DM LINE Penelope 67 239 -355 5 593 35 24 0 0 chr3RHet 1136206 1136248 -1381259 + AT_rich Low_complexity Low_complexity 1 42 0 5 593 326 87 0 0 chr3RHet 1136396 1136442 -1381065 - DNAREP1_DM LINE Penelope -538 56 11 5 593 1008 191 60 77 chr3RHet 1137438 1137804 -1379703 + Gypsy8_LTR LTR Gypsy 7 304 0 5 593 311 184 312 11 chr3RHet 1137804 1137980 -1379527 + Gypsy8_I LTR Gypsy 1 229 -4118 5 593 840 60 17 0 chr3RHet 1138573 1138689 -1378818 - DMCR1A LINE CR1 0 4470 4353 5 593 9488 53 112 18 chr3RHet 1138691 1141147 -1376360 - DMCR1A LINE CR1 -236 4234 1547 5 593 1656 111 80 13 chr3RHet 1141148 1141449 -1376058 + MAX_LTR LTR Pao 1 321 0 5 593 10152 92 39 150 chr3RHet 1141463 1144540 -1372967 + MAX_I LTR Pao 2 2559 -5355 5 593 4795 24 2 0 chr3RHet 1145338 1145924 -1371583 + PROTOP DNA P 1 587 -3893 5 593 22671 18 6 0 chr3RHet 1145933 1148737 -1368770 + PROTOP DNA P 1662 4480 0 5 593 294 320 67 40 chr3RHet 1150786 1151338 -1366169 + Invader3_I LTR Gypsy 2180 2596 -1885 5 593 346 300 7 7 chr3RHet 1151351 1151492 -1366015 + Invader3_I LTR Gypsy 2889 3029 -1859 5 593 335 296 19 19 chr3RHet 1151778 1151940 -1365567 + MDG3_I LTR Gypsy 3263 3424 -1562 5 593 314 328 16 11 chr3RHet 1152276 1152467 -1365040 + BLASTOPIA_I LTR Gypsy 3541 3732 -749 5 593 227 337 112 8 chr3RHet 1152938 1153189 -1364318 + BLASTOPIA_I LTR Gypsy 4204 4480 -1 5 593 5407 38 13 0 chr3RHet 1153492 1154175 -1363332 + MAX_I LTR Pao 2553 3244 -4670 5 593 700 20 267 0 chr3RHet 1154176 1154277 -1363230 + MAX_I LTR Pao 3433 3560 -4354 5 593 11443 34 9 22 chr3RHet 1154275 1155792 -1361715 + MAX_I LTR Pao 6418 7913 -1 5 593 1697 101 80 13 chr3RHet 1155795 1156096 -1361411 + MAX_LTR LTR Pao 1 321 0 5 593 675 45 0 0 chr3RHet 1156096 1156184 -1361323 - DMCR1A LINE CR1 -2920 1550 1463 5 593 1727 38 0 0 chr3RHet 1156180 1156391 -1361116 - DMCR1A LINE CR1 -3287 1183 973 5 593 1981 63 234 33 chr3RHet 1156383 1156770 -1360737 - DMCR1A LINE CR1 -3805 665 200 5 593 4536 31 10 2 chr3RHet 1156779 1157368 -1360139 - IDEFIX_LTR LTR Gypsy 0 594 1 5 593 1170 83 11 0 chr3RHet 1157372 1157552 -1359955 - DMCR1A LINE CR1 -4287 183 2 5 593 1220 105 0 114 chr3RHet 1157578 1157815 -1359692 + G3_DM LINE Jockey 371 580 -4025 5 593 502 351 21 69 chr3RHet 1157585 1158118 -1359389 + DIVER2_I LTR Pao 1320 1826 -2321 5 593 3293 60 11 0 chr3RHet 1158202 1158649 -1358858 - Gypsy11_LTR LTR Gypsy 0 452 1 5 593 303 111 0 36 chr3RHet 1158649 1158694 -1358813 - DM412 LTR Gypsy -110 6787 6745 5 593 650 323 39 28 chr3RHet 1159100 1159489 -1358018 + MICROPIA_I LTR Gypsy 1 393 -4083 5 593 414 327 46 0 chr3RHet 1159508 1159725 -1357782 + MICROPIA_I LTR Gypsy 907 1133 -3343 5 593 4900 313 16 17 chr3RHet 1159708 1161938 -1355569 + MICROPIA_I LTR Gypsy 937 3850 -626 5 593 21 82 0 0 chr3RHet 1162534 1162583 -1354924 + AT_rich Low_complexity Low_complexity 1 49 0 5 593 13376 175 29 25 chr3RHet 1162998 1166600 -1350907 - DM412 LTR Gypsy -343 6554 2579 5 593 21 0 0 0 chr3RHet 1166626 1166647 -1350860 + AT_rich Low_complexity Low_complexity 1 21 0 5 593 502 83 0 45 chr3RHet 1166647 1166735 -1350772 - Gypsy11_I LTR Gypsy -983 2541 2458 5 593 4973 57 122 37 chr3RHet 1166732 1167566 -1349941 - Gypsy11_I LTR Gypsy -1229 2295 1391 5 593 1924 80 70 43 chr3RHet 1167566 1167893 -1349614 - Gypsy9_LTR LTR Gypsy 0 336 1 5 593 6516 67 91 32 chr3RHet 1167893 1168954 -1348553 - Gypsy9_I LTR Gypsy 0 4677 3555 5 593 1567 309 37 23 chr3RHet 1169001 1169815 -1347692 - Gypsy4_I LTR Gypsy -1536 4752 3928 5 593 4816 2 0 0 chr3RHet 1169815 1170373 -1347134 + ACCORD_LTR LTR Gypsy 1 558 0 5 593 9938 5 1 7 chr3RHet 1170373 1171572 -1345935 + ACCORD_I LTR Gypsy 1 1192 -5096 5 593 5527 5 3 0 chr3RHet 1171575 1172240 -1345267 + ACCORD_I LTR Gypsy 1318 1984 -4304 5 593 18650 4 0 0 chr3RHet 1172244 1174432 -1343075 + ACCORD_I LTR Gypsy 2494 4681 -1607 5 593 8143 5 1 0 chr3RHet 1174410 1175385 -1342122 + ACCORD_I LTR Gypsy 5313 6288 0 5 593 3075 0 0 0 chr3RHet 1175385 1175743 -1341764 + ACCORD_LTR LTR Gypsy 1 358 -200 5 593 2336 4 0 4 chr3RHet 1175743 1176019 -1341488 - BURDOCK_LTR LTR Gypsy 0 275 1 5 74 39007 38 2 5 chr3RHet 1176020 1181798 -1335709 - BURDOCK_I LTR Gypsy 0 5860 1 5 594 2336 4 0 4 chr3RHet 1181798 1182074 -1335433 - BURDOCK_LTR LTR Gypsy 0 275 1 5 594 1763 0 0 0 chr3RHet 1182074 1182278 -1335229 + ACCORD_LTR LTR Gypsy 355 558 0 5 594 5423 78 111 102 chr3RHet 1182278 1183414 -1334093 - Gypsy9_I LTR Gypsy -2957 3331 2154 5 594 1650 200 111 6 chr3RHet 1183422 1184036 -1333471 - Gypsy9_I LTR Gypsy -3740 2548 1753 5 594 525 15 0 0 chr3RHet 1184034 1184099 -1333408 - Gypsy9_I LTR Gypsy -3370 1307 1243 5 594 2282 167 105 11 chr3RHet 1184126 1184771 -1332736 - Gypsy9_I LTR Gypsy -4906 1382 701 5 594 9834 47 58 2 chr3RHet 1184768 1186820 -1330687 + DMCR1A LINE CR1 1762 3928 -542 5 594 1043 154 30 75 chr3RHet 1186815 1187082 -1330425 - DNAREP1_DM LINE Penelope -336 258 4 5 594 1947 92 128 3 chr3RHet 1187303 1187640 -1329867 - Invader2_I LTR Gypsy -720 3872 3494 5 594 2663 99 81 0 chr3RHet 1187661 1188106 -1329401 - Invader2_I LTR Gypsy -1694 2898 2418 5 594 3557 105 10 0 chr3RHet 1188127 1188709 -1328798 - Invader2_I LTR Gypsy -2412 2180 1593 5 594 7167 46 37 2 chr3RHet 1188710 1189685 -1327822 + TRANSIB3 DNA Transib 1 1009 -1874 5 594 407 114 0 0 chr3RHet 1189683 1189753 -1327754 + TRANSIB3 DNA Transib 2391 2460 -423 5 594 2657 34 51 0 chr3RHet 1189767 1190123 -1327384 + TRANSIB3 DNA Transib 2510 2883 0 5 594 602 98 0 0 chr3RHet 1190123 1190215 -1327292 - Invader2_I LTR Gypsy -2996 1596 1505 5 594 458 87 0 0 chr3RHet 1190214 1190283 -1327224 - Invader2_I LTR Gypsy -3247 1345 1277 5 594 782 144 89 93 chr3RHet 1190294 1190508 -1326999 - ACCORD2_LTR LTR Gypsy -2 213 1 5 594 641 106 0 0 chr3RHet 1190508 1190600 -1326907 - ACCORD2_I LTR Gypsy -11 7201 7110 5 594 346 141 0 147 chr3RHet 1190599 1190715 -1326792 - ACCORD2_I LTR Gypsy -5553 1659 1561 5 594 4893 52 11 0 chr3RHet 1190717 1191368 -1326139 + QUASIMODO_LTR LTR Gypsy 1 658 0 5 594 12891 56 56 25 chr3RHet 1191368 1193301 -1324206 + QUASIMODO_I LTR Gypsy 1 1994 -4066 5 594 18682 48 45 7 chr3RHet 1193286 1195958 -1321549 + QUASIMODO_I LTR Gypsy 2592 5364 -696 5 594 40579 1 0 0 chr3RHet 1195987 1200680 -1316827 + FW_DM LINE Jockey 1 4692 0 5 594 4730 34 41 0 chr3RHet 1200687 1201369 -1316138 + QUASIMODO_I LTR Gypsy 5351 6060 0 5 594 547 53 0 0 chr3RHet 1201369 1201444 -1316063 + QUASIMODO_LTR LTR Gypsy 1 75 -583 5 594 11609 76 35 2 chr3RHet 1201443 1203124 -1314383 + DMRT1C LINE R1 2932 4667 -776 5 594 242 103 0 0 chr3RHet 1203124 1203163 -1314344 + DMRT1C LINE R1 2595 2633 -2810 5 594 1372 62 16 0 chr3RHet 1203224 1203416 -1314091 + DMRT1C LINE R1 2634 2828 -2615 5 594 1502 76 13 13 chr3RHet 1203452 1203680 -1313827 - ACCORD2_I LTR Gypsy -6984 228 1 5 594 854 146 43 128 chr3RHet 1203680 1203915 -1313592 - ACCORD2_LTR LTR Gypsy 0 215 1 5 594 2585 126 56 11 chr3RHet 1203915 1204365 -1313142 - Invader2_I LTR Gypsy -3402 1190 721 5 594 35 63 0 0 chr3RHet 1204365 1204428 -1313079 + AT_rich Low_complexity Low_complexity 1 63 0 5 594 399 136 0 143 chr3RHet 1204723 1204835 -1312672 - Invader2_I LTR Gypsy -4165 427 332 5 594 1211 79 17 0 chr3RHet 1204835 1205012 -1312495 + HOBO DNA hAT 1 180 -2836 5 594 209 73 70 35 chr3RHet 1205552 1205609 -1311898 + A-rich Low_complexity Low_complexity 2 60 0 5 594 9048 14 8 0 chr3RHet 1205813 1206909 -1310598 + PROTOP_A DNA P 1 1105 0 5 594 424 0 0 0 chr3RHet 1206909 1206958 -1310549 + PROTOP_A DNA P 1055 1104 -1 5 594 29 28 0 0 chr3RHet 1207360 1207396 -1310111 + AT_rich Low_complexity Low_complexity 1 36 0 5 594 1688 107 72 26 chr3RHet 1207455 1207762 -1309745 + MAX_LTR LTR Pao 1 321 0 5 594 2069 290 47 55 chr3RHet 1208091 1209824 -1307683 + ZAM_I LTR Gypsy 4151 5869 -1621 5 594 25 31 0 0 chr3RHet 1210341 1210373 -1307134 + AT_rich Low_complexity Low_complexity 1 32 0 5 594 927 112 219 0 chr3RHet 1210427 1210690 -1306817 - MAX_LTR LTR Pao 0 321 1 5 594 11538 30 10 20 chr3RHet 1210696 1212207 -1305300 - MAX_I LTR Pao -2 7912 6418 5 594 700 20 267 0 chr3RHet 1212205 1212306 -1305201 - MAX_I LTR Pao -4354 3560 3433 5 594 14133 40 5 1 chr3RHet 1212307 1214091 -1303416 - MAX_I LTR Pao -4670 3244 1453 5 594 411 188 0 0 chr3RHet 1214460 1214540 -1302967 + HOBO DNA hAT 193 272 -2744 5 594 599 119 528 7 chr3RHet 1214545 1214687 -1302820 + PROTOP_B DNA P 17 232 -921 5 594 186 0 0 81 chr3RHet 1214687 1214724 -1302783 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5 594 3719 316 80 17 chr3RHet 1215004 1217544 -1299963 - Copia2_I LTR Copia -97 4065 1367 5 594 5561 47 68 0 chr3RHet 1217659 1218928 -1298579 - Baggins1 LINE LOA 0 5453 4099 5 594 1121 134 54 15 chr3RHet 1218948 1219153 -1298354 + HOBO DNA hAT 2785 2997 -19 5 594 1173 119 25 0 chr3RHet 1219157 1219359 -1298148 - Invader2_I LTR Gypsy -4251 341 135 5 594 6227 63 32 5 chr3RHet 1219357 1220221 -1297286 - IVK_DM LINE I -270 5132 4245 5 594 22245 59 48 3 chr3RHet 1220220 1223391 -1294116 - IVK_DM LINE I -1796 3606 297 5 594 3027 22 0 0 chr3RHet 1224822 1225186 -1292321 - PROTOP_A DNA P 0 1105 742 5 594 36 62 0 0 chr3RHet 1225630 1225694 -1291813 + AT_rich Low_complexity Low_complexity 1 64 0 5 594 242 279 0 0 chr3RHet 1225994 1226062 -1291445 - Gypsy7_I LTR Gypsy -1930 3054 2987 5 594 917 113 43 0 chr3RHet 1226300 1226485 -1291022 - TLD2 Unknown Unknown -25 193 1 5 594 250 323 30 6 chr3RHet 1226418 1226583 -1290924 - Gypsy4_I LTR Gypsy -3599 2689 2521 5 594 257 277 9 15 chr3RHet 1226577 1226756 -1290751 - Gypsy9_I LTR Gypsy -2630 2047 1952 5 594 28 0 0 0 chr3RHet 1227675 1227703 -1289804 + AT_rich Low_complexity Low_complexity 1 28 0 5 594 4353 84 13 9 chr3RHet 1228339 1228972 -1288535 + Mariner2_DM DNA Tc1 278 912 0 5 594 41 21 0 0 chr3RHet 1229447 1229495 -1288012 + AT_rich Low_complexity Low_complexity 1 48 0 5 594 13966 28 3 6 chr3RHet 1230486 1232223 -1285284 + DIVER2_I LTR Pao 2417 4147 0 5 594 1498 32 5 0 chr3RHet 1232223 1232410 -1285097 + DIVER2_LTR LTR Pao 1 188 -197 5 594 4036 39 14 0 chr3RHet 1232408 1232920 -1284587 - Baggins1 LINE LOA -67 5386 4868 5 594 4068 59 29 0 chr3RHet 1232907 1233451 -1284056 - Baggins1 LINE LOA -798 4655 4096 5 594 525 284 132 0 chr3RHet 1233521 1233778 -1283729 - MDG1_I LTR Gypsy -3726 2870 2580 5 594 780 129 90 0 chr3RHet 1234350 1234505 -1283002 + DMCR1A LINE CR1 2401 2569 -1901 5 594 856 170 260 0 chr3RHet 1234506 1234896 -1282611 + DMCR1A LINE CR1 3192 3683 -787 5 594 535 186 0 25 chr3RHet 1235013 1235134 -1282373 - DMLTR5 LTR Gypsy 0 266 149 5 594 837 104 0 0 chr3RHet 1235174 1235299 -1282208 - HMSBEAGLE_I LTR Gypsy 0 6529 6405 5 594 319 45 0 0 chr3RHet 1235402 1235446 -1282061 - HMSBEAGLE_I LTR Gypsy -126 6403 6360 5 594 666 149 144 107 chr3RHet 1235613 1235876 -1281631 - HMSBEAGLE_I LTR Gypsy -162 6367 6095 5 594 8801 113 147 38 chr3RHet 1235886 1237629 -1279878 - HMSBEAGLE_I LTR Gypsy -633 5896 3964 5 594 1297 62 197 8 chr3RHet 1237628 1237877 -1279630 - HMSBEAGLE_I LTR Gypsy -2841 3688 3393 5 594 10666 62 39 8 chr3RHet 1237920 1238079 -1279428 - DMCR1A LINE CR1 -276 4194 4004 5 594 260 27 27 0 chr3RHet 1238079 1238116 -1279391 + (TTAAA)n Simple_repeat Simple_repeat 2 39 0 5 594 10666 56 100 17 chr3RHet 1238116 1240345 -1277162 - DMCR1A LINE CR1 -467 4003 1616 5 594 12935 75 71 8 chr3RHet 1240357 1242311 -1275196 - HMSBEAGLE_I LTR Gypsy -3139 3390 1314 5 594 9062 13 8 0 chr3RHet 1242311 1243407 -1274100 + PROTOP_A DNA P 1 1105 0 5 594 1335 184 101 32 chr3RHet 1243407 1243736 -1273771 - HMSBEAGLE_I LTR Gypsy -5204 1325 974 5 594 210 193 0 0 chr3RHet 1243808 1243865 -1273642 + (TTG)n Simple_repeat Simple_repeat 1 57 0 5 594 347 161 32 11 chr3RHet 1243972 1244066 -1273441 - HMSBEAGLE_I LTR Gypsy -5817 712 617 5 594 733 123 240 0 chr3RHet 1244092 1244263 -1273244 - HMSBEAGLE_I LTR Gypsy -6314 215 4 5 594 1102 126 78 18 chr3RHet 1244264 1244482 -1273025 - DMLTR5 LTR Gypsy -1 265 35 5 594 262 85 128 0 chr3RHet 1244624 1244659 -1272848 - PROTOP DNA P -8 4472 4431 5 594 605 119 8 25 chr3RHet 1244659 1244780 -1272727 + M4DM DNA Transib 1 119 -1316 5 594 423 61 0 83 chr3RHet 1244779 1244851 -1272656 + M4DM DNA Transib 304 369 -1066 5 594 5064 101 67 16 chr3RHet 1244974 1245953 -1271554 + M4DM DNA Transib 406 1435 0 5 594 1415 103 146 36 chr3RHet 1245968 1246270 -1271237 - PROTOP DNA P -151 4329 3995 5 594 906 41 73 0 chr3RHet 1246274 1246397 -1271110 - PROTOP DNA P -1025 3455 3324 5 594 411 57 0 0 chr3RHet 1246394 1246447 -1271060 - PROTOP DNA P -1420 3060 3008 5 594 6708 98 157 80 chr3RHet 1246473 1247834 -1269673 - HMSBEAGLE_I LTR Gypsy -1101 5428 3964 5 594 1297 62 197 8 chr3RHet 1247833 1248082 -1269425 - HMSBEAGLE_I LTR Gypsy -2841 3688 3393 5 594 805 119 201 0 chr3RHet 1248125 1248284 -1269223 - DMCR1A LINE CR1 -276 4194 4004 5 594 260 27 27 0 chr3RHet 1248284 1248321 -1269186 + (TTAAA)n Simple_repeat Simple_repeat 2 39 0 5 594 3980 49 117 44 chr3RHet 1248343 1248960 -1268547 - DMCR1A LINE CR1 -2193 2277 1616 5 594 12710 73 36 8 chr3RHet 1248972 1250815 -1266692 - HMSBEAGLE_I LTR Gypsy -3139 3390 1496 5 594 519 135 125 0 chr3RHet 1250829 1250925 -1266582 - HMSBEAGLE_I LTR Gypsy -5108 1421 1314 5 594 9062 13 8 0 chr3RHet 1250925 1252021 -1265486 + PROTOP_A DNA P 1 1105 0 5 594 1335 184 101 32 chr3RHet 1252021 1252350 -1265157 - HMSBEAGLE_I LTR Gypsy -5204 1325 974 5 594 210 193 0 0 chr3RHet 1252422 1252479 -1265028 + (TTG)n Simple_repeat Simple_repeat 1 57 0 5 594 347 161 32 11 chr3RHet 1252586 1252680 -1264827 - HMSBEAGLE_I LTR Gypsy -5817 712 617 5 594 733 123 240 0 chr3RHet 1252706 1252877 -1264630 - HMSBEAGLE_I LTR Gypsy -6314 215 4 5 594 1102 126 78 18 chr3RHet 1252878 1253096 -1264411 - DMLTR5 LTR Gypsy -1 265 35 5 594 262 85 128 0 chr3RHet 1253238 1253273 -1264234 - PROTOP_B DNA P -7 1146 1106 5 594 605 119 8 25 chr3RHet 1253273 1253394 -1264113 + M4DM DNA Transib 1 119 -1316 5 594 423 61 0 83 chr3RHet 1253393 1253465 -1264042 + M4DM DNA Transib 304 369 -1066 5 594 3066 104 8 23 chr3RHet 1253588 1254107 -1263400 + M4DM DNA Transib 406 916 -519 5 594 41 21 0 0 chr3RHet 1254631 1254679 -1262828 + AT_rich Low_complexity Low_complexity 1 48 0 5 594 3562 60 58 2 chr3RHet 1255154 1255667 -1261840 - Mariner2_DM DNA Tc1 0 912 371 5 594 409 86 0 0 chr3RHet 1255665 1255723 -1261784 - Mariner2_DM DNA Tc1 -854 58 1 5 594 17679 37 8 35 chr3RHet 1255961 1258364 -1259143 + Gypsy12_LTR LTR Gypsy 1 2336 0 5 594 21 36 0 0 chr3RHet 1258683 1258711 -1258796 + AT_rich Low_complexity Low_complexity 1 28 0 5 594 27 0 0 0 chr3RHet 1259231 1259258 -1258249 + AT_rich Low_complexity Low_complexity 1 27 0 5 594 10988 101 12 2 chr3RHet 1259605 1261324 -1256183 - S_DM DNA Tc1 0 1736 1 5 594 564 277 6 0 chr3RHet 1261953 1262119 -1255388 + DIVER2_I LTR Pao 535 701 -3446 5 594 7174 99 156 2 chr3RHet 1262356 1263684 -1253823 - Gypsy2_I LTR Gypsy -2086 4049 2515 5 594 2995 114 113 4 chr3RHet 1263684 1264196 -1253311 - Gypsy2_I LTR Gypsy -3850 2285 1718 5 594 973 68 0 0 chr3RHet 1264499 1264631 -1252876 + Baggins1 LINE LOA 2434 2565 -2888 5 594 4904 28 47 3 chr3RHet 1264623 1265261 -1252246 + Baggins1 LINE LOA 2669 3334 -2119 5 594 3418 57 104 0 chr3RHet 1265250 1265740 -1251767 + Baggins1 LINE LOA 3437 3977 -1476 5 594 2172 40 0 0 chr3RHet 1265742 1266014 -1251493 + Baggins1 LINE LOA 4213 4484 -969 5 594 28 0 0 0 chr3RHet 1266442 1266470 -1251037 + AT_rich Low_complexity Low_complexity 1 28 0 5 594 267 0 22 44 chr3RHet 1266475 1266520 -1250987 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 5 594 932 56 0 42 chr3RHet 1266527 1266695 -1250812 + (TTA)n Simple_repeat Simple_repeat 1 161 0 5 594 531 78 0 0 chr3RHet 1267158 1267235 -1250272 + (TTA)n Simple_repeat Simple_repeat 1 77 0 5 594 1904 0 5 0 chr3RHet 1267950 1268172 -1249335 + DIVER2_LTR LTR Pao 1 223 -162 5 594 16447 65 67 24 chr3RHet 1268169 1270665 -1246842 + DIVER2_I LTR Pao 481 3082 -1065 5 594 1862 27 0 0 chr3RHet 1270664 1270889 -1246618 + DIVER2_I LTR Pao 3199 3423 -724 5 594 1539 27 0 0 chr3RHet 1270887 1271074 -1246433 + DIVER2_LTR LTR Pao 168 354 -31 5 594 268 314 63 68 chr3RHet 1272862 1273355 -1244152 + Copia2_I LTR Copia 2630 3279 -883 5 594 247 115 35 82 chr3RHet 1274077 1274162 -1243345 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 5 594 1113 42 0 0 chr3RHet 1274189 1274332 -1243175 + (TTA)n Simple_repeat Simple_repeat 2 144 0 5 594 35804 10 5 1 chr3RHet 1274332 1279708 -1237799 + IVK_DM LINE I 1 5402 0 5 594 1491 62 0 2 chr3RHet 1279713 1280150 -1237357 + (TTA)n Simple_repeat Simple_repeat 1 436 0 5 594 26712 1 1 0 chr3RHet 1280152 1283051 -1234456 - DOC LINE Jockey 0 4725 1824 5 594 1052 102 0 11 chr3RHet 1283065 1283244 -1234263 + (TTA)n Simple_repeat Simple_repeat 1 177 0 5 594 287 332 50 35 chr3RHet 1283528 1283787 -1233720 + BS LINE Jockey 347 609 -4517 5 594 233 225 13 173 chr3RHet 1284106 1284262 -1233245 + BS LINE Jockey 991 1121 -4005 5 594 339 280 94 18 chr3RHet 1284454 1284625 -1232882 + BS LINE Jockey 2093 2276 -2850 5 594 338 236 79 0 chr3RHet 1284623 1284712 -1232795 + BS LINE Jockey 2638 2733 -2393 5 594 402 298 68 72 chr3RHet 1285831 1286324 -1231183 + Copia2_I LTR Copia 2630 3279 -883 5 594 231 128 35 82 chr3RHet 1287046 1287131 -1230376 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 5 594 1491 29 0 0 chr3RHet 1287158 1287373 -1230134 + (TTA)n Simple_repeat Simple_repeat 1 215 0 5 594 24 0 0 0 chr3RHet 1287374 1287398 -1230109 + AT_rich Low_complexity Low_complexity 1 24 0 5 594 1170 93 0 9 chr3RHet 1287398 1287855 -1229652 + (TTA)n Simple_repeat Simple_repeat 1 452 0 5 594 287 332 50 35 chr3RHet 1288139 1288398 -1229109 + HELENA_RT LINE Jockey 347 609 -4517 5 594 328 240 14 79 chr3RHet 1288717 1288857 -1228650 + HELENA_RT LINE Jockey 991 1121 -4005 5 594 325 286 94 18 chr3RHet 1289049 1289220 -1228287 + HELENA_RT LINE Jockey 2093 2276 -2850 5 594 573 290 84 24 chr3RHet 1289218 1289469 -1228038 + HELENA_RT LINE Jockey 2638 2903 -2223 5 594 2442 250 69 11 chr3RHet 1289489 1290451 -1227056 + HELENA_RT LINE Jockey 1 376 -941 5 594 3720 48 0 13 chr3RHet 1292422 1292890 -1224617 + DOC3_DM LINE Jockey 169 630 -4110 5 594 6774 67 50 8 chr3RHet 1292892 1293814 -1223693 + DMRT1A LINE R1 1 961 -4222 5 594 17789 35 28 18 chr3RHet 1293813 1296024 -1221483 + DMRT1A LINE R1 1104 3335 -1848 5 594 3497 36 5 0 chr3RHet 1296016 1296430 -1221077 + DMRT1A LINE R1 4451 4866 -317 5 594 645 38 0 0 chr3RHet 1296426 1296506 -1221001 + DMRT1A LINE R1 5094 5173 -10 5 594 1093 15 0 0 chr3RHet 1296507 1296638 -1220869 + DOC3_DM LINE Jockey 620 750 -3990 5 594 939 39 7 59 chr3RHet 1296642 1296777 -1220730 + DMCR1A LINE CR1 239 366 -4104 5 594 12912 37 29 3 chr3RHet 1296771 1298317 -1219190 + DMCR1A LINE CR1 664 2248 -2222 5 594 11588 31 30 2 chr3RHet 1298323 1299700 -1217807 + DMCR1A LINE CR1 2555 3969 -501 5 594 2925 34 53 0 chr3RHet 1299700 1300056 -1217451 + DMCR1A LINE CR1 4096 4470 0 5 594 5241 41 8 0 chr3RHet 1300057 1300691 -1216816 + DOC3_DM LINE Jockey 811 1449 -3291 5 594 3619 48 39 0 chr3RHet 1301193 1301650 -1215857 + DOC3_DM LINE Jockey 1421 1895 -2845 5 594 7515 31 2 0 chr3RHet 1301649 1302519 -1214988 + DOC3_DM LINE Jockey 2199 3070 -1670 5 594 7954 33 73 32 chr3RHet 1302519 1303580 -1213927 - PROTOP_A DNA P 0 1105 1 5 594 11759 44 24 4 chr3RHet 1303581 1305128 -1212379 + DOC3_DM LINE Jockey 3065 4740 0 5 594 1241 323 103 39 chr3RHet 1305134 1305882 -1211625 - DIVER2_I LTR Pao -2904 1243 447 5 594 814 148 196 5 chr3RHet 1306426 1306630 -1210877 - DNAREP1_DM LINE Penelope -70 524 282 5 594 310 296 26 0 chr3RHet 1307494 1307609 -1209898 - FW3_DM LINE Jockey -421 2711 2594 5 594 347 172 0 0 chr3RHet 1309210 1309274 -1208233 - DNAREP1_DM LINE Penelope 0 594 531 5 594 1269 178 74 10 chr3RHet 1309319 1309631 -1207876 - DNAREP1_DM LINE Penelope -262 332 1 5 74 26 64 0 0 chr3RHet 1310691 1310738 -1206769 + AT_rich Low_complexity Low_complexity 1 47 0 5 595 28 0 0 0 chr3RHet 1310866 1310894 -1206613 + AT_rich Low_complexity Low_complexity 1 28 0 5 595 1017 185 143 5 chr3RHet 1311418 1311641 -1205866 - DMCR1A LINE CR1 -842 3628 3375 5 595 1672 131 0 4 chr3RHet 1311944 1312197 -1205310 + Gypsy12A_LTR LTR Gypsy 1849 2100 -180 5 595 3015 56 158 41 chr3RHet 1312234 1312701 -1204806 + DMCR1A LINE CR1 1 522 -3948 5 595 231 276 0 0 chr3RHet 1313410 1313468 -1204039 - ROOA_I LTR Pao -3316 3533 3476 5 595 3749 41 2 17 chr3RHet 1315163 1315632 -1201875 + DOC3_DM LINE Jockey 169 630 -4110 5 595 7603 54 18 2 chr3RHet 1315634 1316580 -1200927 + DMRT1A LINE R1 1 961 -4222 5 595 17765 35 28 18 chr3RHet 1316579 1318790 -1198717 + DMRT1A LINE R1 1104 3335 -1848 5 595 3497 36 5 0 chr3RHet 1318782 1319196 -1198311 + DMRT1A LINE R1 4451 4866 -317 5 595 645 38 0 0 chr3RHet 1319192 1319272 -1198235 + DMRT1A LINE R1 5094 5173 -10 5 595 1093 15 0 0 chr3RHet 1319273 1319404 -1198103 + DOC3_DM LINE Jockey 620 750 -3990 5 595 939 39 7 59 chr3RHet 1319408 1319543 -1197964 + DMCR1A LINE CR1 239 366 -4104 5 595 12912 37 29 3 chr3RHet 1319537 1321083 -1196424 + DMCR1A LINE CR1 664 2248 -2222 5 595 16013 32 20 1 chr3RHet 1321089 1322969 -1194538 + DMCR1A LINE CR1 2555 4470 0 5 595 5029 45 24 0 chr3RHet 1322968 1323592 -1193915 + DOC3_DM LINE Jockey 811 1449 -3291 5 595 3804 47 15 0 chr3RHet 1324094 1324562 -1192945 + DOC3_DM LINE Jockey 1421 1895 -2845 5 595 7482 33 2 0 chr3RHet 1324561 1325431 -1192076 + DOC3_DM LINE Jockey 2199 3070 -1670 5 595 8784 32 34 2 chr3RHet 1325432 1326502 -1191005 - PROTOP_A DNA P -1 1104 1 5 595 3327 55 29 0 chr3RHet 1326503 1326919 -1190588 + DOC3_DM LINE Jockey 3065 3492 -1248 5 595 4047 39 39 0 chr3RHet 1326904 1327394 -1190113 + DMCR1A LINE CR1 3962 4470 0 5 595 5118 39 24 0 chr3RHet 1327392 1328016 -1189491 + DOC3_DM LINE Jockey 811 1449 -3291 5 595 3804 47 15 0 chr3RHet 1328518 1328986 -1188521 + DOC3_DM LINE Jockey 1421 1895 -2845 5 595 7482 33 2 0 chr3RHet 1328985 1329855 -1187652 + DOC3_DM LINE Jockey 2199 3070 -1670 5 595 8925 30 31 2 chr3RHet 1329856 1330929 -1186578 - PROTOP_A DNA P -1 1104 1 5 595 11323 43 48 5 chr3RHet 1330930 1332442 -1185065 + DOC3_DM LINE Jockey 3065 4740 0 5 595 258 364 8 0 chr3RHet 1332448 1332566 -1184941 - DIVER2_I LTR Pao -2904 1243 1125 5 595 1241 316 9 0 chr3RHet 1332763 1333196 -1184311 - DIVER2_I LTR Pao -3264 883 447 5 595 701 158 184 65 chr3RHet 1333735 1333952 -1183555 - DNAREP1_DM LINE Penelope -70 524 282 5 595 304 304 26 0 chr3RHet 1334816 1334931 -1182576 - FW3_DM LINE Jockey -421 2711 2594 5 595 342 164 0 0 chr3RHet 1336551 1336612 -1180895 - DNAREP1_DM LINE Penelope -3 591 531 5 595 917 155 0 77 chr3RHet 1336621 1336803 -1180704 + DNAREP1_DM LINE Penelope 321 488 -106 5 595 586 137 244 0 chr3RHet 1336823 1336954 -1180553 + DMCR1A LINE CR1 4047 4209 -261 5 595 3117 22 0 0 chr3RHet 1336954 1337309 -1180198 + DIVER2_LTR LTR Pao 21 375 -10 5 595 8194 34 18 0 chr3RHet 1337307 1338295 -1179212 + DMCR1A LINE CR1 3040 4045 -425 5 595 965 73 37 0 chr3RHet 1338286 1338422 -1179085 + DMCR1A LINE CR1 4330 4470 0 5 595 844 87 39 16 chr3RHet 1338431 1338560 -1178947 + Gypsy12A_LTR LTR Gypsy 2138 2269 -11 5 595 476 161 24 89 chr3RHet 1338560 1338683 -1178824 + Gypsy12_I LTR Gypsy 45 159 -5387 5 595 561 222 47 52 chr3RHet 1338977 1339282 -1178225 - Gypsy8_I LTR Gypsy -4111 236 1 5 595 784 160 4 110 chr3RHet 1339266 1339535 -1177972 - Gypsy8_LTR LTR Gypsy 0 304 1 5 595 4798 127 19 0 chr3RHet 1339538 1340284 -1177223 - FW_DM LINE Jockey -545 4147 3388 5 595 27 29 0 0 chr3RHet 1340285 1340319 -1177188 + AT_rich Low_complexity Low_complexity 1 34 0 5 595 1291 169 17 53 chr3RHet 1340352 1340652 -1176855 - Gypsy5_LTR LTR Gypsy -141 289 1 5 595 917 181 6 0 chr3RHet 1340663 1340829 -1176678 - Gypsy5_I LTR Gypsy 0 6509 6343 5 595 8387 176 13 0 chr3RHet 1340822 1342427 -1175080 - Gypsy5_I LTR Gypsy -573 5936 4311 5 595 2250 173 0 55 chr3RHet 1342442 1342895 -1174612 - Gypsy5_I LTR Gypsy -2333 4176 3749 5 595 2989 6 0 0 chr3RHet 1342896 1343226 -1174281 - TRANSPAC_LTR LTR Gypsy 0 330 1 5 595 39504 9 0 1 chr3RHet 1343225 1347820 -1169687 - TRANSPAC_I LTR Gypsy 0 4590 1 5 595 2989 6 0 0 chr3RHet 1347820 1348150 -1169357 - TRANSPAC_LTR LTR Gypsy 0 330 1 5 595 19603 166 32 8 chr3RHet 1348150 1351729 -1165778 - Gypsy5_I LTR Gypsy -2758 3751 88 5 595 1223 168 20 54 chr3RHet 1356815 1357111 -1160396 - Gypsy5_LTR LTR Gypsy -144 286 1 5 595 4441 157 42 0 chr3RHet 1357117 1357889 -1159618 - Gypsy5_I LTR Gypsy -24 6485 5682 5 595 1432 41 0 0 chr3RHet 1357894 1358066 -1159441 - DOC3_DM LINE Jockey -368 4372 4201 5 595 4993 42 24 0 chr3RHet 1358482 1359106 -1158401 - DOC3_DM LINE Jockey -3291 1449 811 5 595 1977 26 9 0 chr3RHet 1359105 1359337 -1158170 - DMCR1A LINE CR1 0 4470 4237 5 595 331 50 0 0 chr3RHet 1359337 1359377 -1158130 - IDEFIX_I LTR Gypsy -5588 40 1 5 595 25 0 0 0 chr3RHet 1359647 1359672 -1157835 + AT_rich Low_complexity Low_complexity 1 25 0 5 595 2845 45 18 23 chr3RHet 1359863 1360254 -1157253 - IDEFIX_LTR LTR Gypsy 0 594 206 5 595 4235 62 8 8 chr3RHet 1360255 1360870 -1156637 - IDEFIX_I LTR Gypsy -87 5541 4927 5 595 21193 56 10 3 chr3RHet 1360882 1363622 -1153885 - IDEFIX_I LTR Gypsy -2089 3539 780 5 595 5449 59 17 9 chr3RHet 1363613 1364364 -1153143 - IDEFIX_I LTR Gypsy -680 4948 4192 5 595 23695 59 12 2 chr3RHet 1364358 1367467 -1150040 - IDEFIX_I LTR Gypsy -1711 3917 780 5 595 5425 60 17 9 chr3RHet 1367458 1368209 -1149298 - IDEFIX_I LTR Gypsy -680 4948 4192 5 595 23827 60 9 2 chr3RHet 1368203 1371320 -1146187 - IDEFIX_I LTR Gypsy -1711 3917 780 5 595 5500 55 17 9 chr3RHet 1371311 1372062 -1145445 - IDEFIX_I LTR Gypsy -680 4948 4192 5 595 23867 60 9 2 chr3RHet 1372056 1375174 -1142333 - IDEFIX_I LTR Gypsy -1711 3917 780 5 595 5500 55 17 9 chr3RHet 1375165 1375916 -1141591 - IDEFIX_I LTR Gypsy -680 4948 4192 5 595 24337 56 28 2 chr3RHet 1375910 1379725 -1137782 - IDEFIX_I LTR Gypsy -1711 3917 1 5 595 25 0 0 0 chr3RHet 1379995 1380020 -1137487 + AT_rich Low_complexity Low_complexity 1 25 0 5 595 1902 22 0 0 chr3RHet 1380107 1380335 -1137172 - IDEFIX_LTR LTR Gypsy -366 228 1 5 595 241 125 0 0 chr3RHet 1380303 1380343 -1137164 + BARI1 DNA Tc1 3 42 -1708 5 595 6377 47 71 1 chr3RHet 1380341 1381195 -1136312 - DOC3_DM LINE Jockey -3475 1265 352 5 595 7624 165 106 6 chr3RHet 1381174 1382752 -1134755 - FW_DM LINE Jockey -2222 2571 697 5 595 3524 194 72 70 chr3RHet 1382838 1384073 -1133434 - MDG1_I LTR Gypsy -5354 1242 113 5 595 31 26 0 0 chr3RHet 1384237 1384275 -1133232 + AT_rich Low_complexity Low_complexity 1 38 0 5 595 977 144 83 15 chr3RHet 1384309 1384513 -1132994 - MDG1_LTR LTR Gypsy -29 413 196 5 595 1590 15 0 0 chr3RHet 1384514 1384787 -1132720 + (TTA)n Simple_repeat Simple_repeat 1 273 0 5 595 1721 302 44 12 chr3RHet 1384804 1385737 -1131770 - Gypsy5_I LTR Gypsy -2174 4114 2528 5 595 1062 111 214 0 chr3RHet 1386623 1386907 -1130600 + DMRT1A LINE R1 4288 4632 -551 5 595 385 109 0 0 chr3RHet 1386897 1386952 -1130555 + DMRT1C LINE R1 639 693 -4750 5 595 1726 136 282 8 chr3RHet 1386953 1387723 -1129784 + DMRT1C LINE R1 1664 2643 -2800 5 595 4007 113 137 0 chr3RHet 1387793 1388457 -1129050 + DMRT1C LINE R1 4369 5123 -320 5 595 3258 118 30 0 chr3RHet 1388459 1388951 -1128556 + DMRT1B LINE R1 1228 1734 -3449 5 595 3189 56 202 6 chr3RHet 1388951 1389451 -1128056 + PROTOP DNA P 1 600 -3880 5 595 605 146 228 7 chr3RHet 1389437 1389582 -1127925 + PROTOP DNA P 898 1074 -3406 5 595 616 102 45 0 chr3RHet 1389589 1389677 -1127830 + PROTOP DNA P 3926 4017 -463 5 595 3117 35 32 0 chr3RHet 1389680 1390054 -1127453 - ROOA_LTR LTR Pao 0 386 1 5 595 6687 50 64 5 chr3RHet 1390067 1390959 -1126548 - ROOA_I LTR Pao -7 6842 5898 5 595 274 89 0 0 chr3RHet 1390960 1391005 -1126502 + PROTOP DNA P 663 707 -3773 5 595 422 108 0 0 chr3RHet 1391006 1391071 -1126436 + PROTOP DNA P 1009 1073 -3407 5 595 3614 5 7 7 chr3RHet 1391086 1391500 -1126007 - DM297_LTR LTR Gypsy 0 414 1 5 595 54743 7 0 1 chr3RHet 1391500 1397669 -1119838 - DM297_I LTR Gypsy 0 6167 1 5 595 3614 5 7 7 chr3RHet 1397669 1398083 -1119424 - DM297_LTR LTR Gypsy 0 414 1 5 595 2147 108 112 10 chr3RHet 1398109 1398527 -1118980 + PROTOP_A DNA P 683 1105 0 5 595 7617 95 16 2 chr3RHet 1398578 1399616 -1117891 + G5A_DM LINE Jockey 31 1083 -1758 5 595 1202 33 53 0 chr3RHet 1399615 1399766 -1117741 + G5A_DM LINE Jockey 1240 1398 -1443 5 595 22 0 0 0 chr3RHet 1399858 1399880 -1117627 + AT_rich Low_complexity Low_complexity 1 22 0 5 595 3848 306 48 52 chr3RHet 1400607 1404592 -1112915 - ZAM_I LTR Gypsy -428 7264 2142 5 595 246 226 0 0 chr3RHet 1404748 1404801 -1112706 - ZAM_I LTR Gypsy -4563 3129 3077 5 595 372 319 58 61 chr3RHet 1404890 1405184 -1112323 - TIRANT_I LTR Gypsy -4922 2770 2478 5 595 624 321 27 43 chr3RHet 1405319 1405693 -1111814 - ZAM_I LTR Gypsy -5397 2093 1726 5 595 6264 23 4 8 chr3RHet 1406831 1407567 -1109940 - DMRT1A LINE R1 0 5183 4451 5 595 17049 32 50 18 chr3RHet 1407559 1409722 -1107785 - DMRT1A LINE R1 -1848 3335 1104 5 595 2718 83 83 5 chr3RHet 1409752 1410150 -1107357 - DMRT1A LINE R1 -4754 429 1 5 595 3653 50 2 21 chr3RHet 1410152 1410623 -1106884 - DOC3_DM LINE Jockey -4110 630 169 5 595 7707 50 93 0 chr3RHet 1410766 1411784 -1105723 - DMRT1A LINE R1 -4070 1113 1 5 595 475 130 0 0 chr3RHet 1412464 1412533 -1104974 + G5A_DM LINE Jockey 1496 1564 -1277 5 595 1420 87 123 3 chr3RHet 1412539 1412888 -1104619 + G5A_DM LINE Jockey 1855 2245 -596 5 595 231 139 0 0 chr3RHet 1412882 1412918 -1104589 + G5A_DM LINE Jockey 2798 2833 -8 5 595 1770 167 66 16 chr3RHet 1414161 1414615 -1102892 - HELENA_RT LINE Jockey 0 1317 1033 5 595 5012 108 39 7 chr3RHet 1414625 1415386 -1102121 - HELENA_RT LINE Jockey -423 894 109 5 595 479 253 87 31 chr3RHet 1415375 1415571 -1101936 - BS LINE Jockey -2827 2299 2093 5 595 284 337 23 11 chr3RHet 1415587 1415764 -1101743 - BS LINE Jockey -3434 1692 1514 5 595 275 266 35 76 chr3RHet 1415785 1415956 -1101551 - BS LINE Jockey -4005 1121 958 5 595 305 355 42 13 chr3RHet 1416243 1416480 -1101027 - BS LINE Jockey -4517 609 366 5 595 672 77 0 0 chr3RHet 1416714 1416805 -1100702 + (TAA)n Simple_repeat Simple_repeat 1 91 0 5 595 2107 35 7 34 chr3RHet 1416805 1417095 -1100412 - BATUMI_I LTR Pao -680 7283 7002 5 595 5735 160 13 37 chr3RHet 1417095 1418486 -1099021 - BATUMI_I LTR Pao 0 7963 6563 5 595 33166 63 52 69 chr3RHet 1418477 1423609 -1093898 - BATUMI_I LTR Pao -2917 5046 1 5 595 2037 67 21 43 chr3RHet 1423609 1424029 -1093478 - BATUMI_I LTR Pao -624 7339 7002 5 595 966 88 0 0 chr3RHet 1424029 1424176 -1093331 + (TAA)n Simple_repeat Simple_repeat 2 148 0 5 595 186 0 98 39 chr3RHet 1424205 1424256 -1093251 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 5 595 24 67 0 0 chr3RHet 1424261 1424306 -1093201 + AT_rich Low_complexity Low_complexity 1 45 0 5 595 1620 57 0 6 chr3RHet 1424360 1425080 -1092427 + (TAA)n Simple_repeat Simple_repeat 1 715 0 5 595 636 184 0 0 chr3RHet 1425124 1425233 -1092274 - HELENA_RT LINE Jockey -34 1283 1175 5 595 908 48 0 8 chr3RHet 1427187 1427314 -1090193 + (TTA)n Simple_repeat Simple_repeat 2 127 0 5 595 24 0 0 0 chr3RHet 1427678 1427702 -1089805 + AT_rich Low_complexity Low_complexity 1 24 0 5 595 51 75 0 0 chr3RHet 1427956 1428063 -1089444 + AT_rich Low_complexity Low_complexity 1 107 0 5 595 22 0 0 0 chr3RHet 1428895 1428917 -1088590 + AT_rich Low_complexity Low_complexity 1 22 0 5 595 23 0 0 0 chr3RHet 1429591 1429614 -1087893 + AT_rich Low_complexity Low_complexity 1 23 0 5 595 263 278 124 45 chr3RHet 1430092 1430269 -1087238 + CIRCE LINE Composite 2505 2695 -3661 5 595 2335 18 0 47 chr3RHet 1430739 1431036 -1086471 - BATUMI_I LTR Pao -679 7284 7002 5 595 5656 174 12 38 chr3RHet 1431036 1432625 -1084882 - BATUMI_I LTR Pao 0 7963 6369 5 595 19389 141 82 89 chr3RHet 1432640 1437498 -1080009 - BATUMI_I LTR Pao -3141 4822 1 5 595 2387 14 0 28 chr3RHet 1437498 1437789 -1079718 - BATUMI_I LTR Pao -679 7284 7002 5 595 374 234 18 26 chr3RHet 1437844 1437958 -1079549 - DM176_LTR LTR Gypsy 0 507 395 5 595 310 284 67 60 chr3RHet 1439856 1440190 -1077317 - ZAM_I LTR Gypsy -3793 3697 3535 5 596 206 91 54 18 chr3RHet 1441956 1442012 -1075495 + (CGTTG)n Simple_repeat Simple_repeat 1 58 0 5 596 3795 160 242 1 chr3RHet 1442393 1443565 -1073942 + BS2 LINE Jockey 415 1871 -2850 5 596 484 303 383 3 chr3RHet 1443574 1443861 -1073646 + BS2 LINE Jockey 2130 2525 -2196 5 596 870 154 0 0 chr3RHet 1443984 1444120 -1073387 + BS3_DM LINE Jockey 1208 1343 -447 5 596 1015 139 111 6 chr3RHet 1444118 1444296 -1073211 + BS3_DM LINE Jockey 1505 1701 -89 5 596 2556 65 31 0 chr3RHet 1444296 1444649 -1072858 + TRANSIB4 DNA Transib 1 364 -2246 5 596 6580 60 33 38 chr3RHet 1444673 1445611 -1071896 + TRANSIB4 DNA Transib 1673 2605 -5 5 596 8041 129 54 66 chr3RHet 1445652 1447458 -1070049 + Transib5 DNA Transib 3 1785 -1216 5 596 6675 51 34 0 chr3RHet 1447445 1448295 -1069212 + Transib5 DNA Transib 1924 2802 -199 5 596 1949 108 13 22 chr3RHet 1448372 1448683 -1068824 + G_DM LINE Jockey 1825 2132 -2214 5 596 3915 158 96 4 chr3RHet 1448685 1450374 -1067133 + G_DM LINE Jockey 2465 4107 -239 5 596 365 80 0 0 chr3RHet 1450375 1450425 -1067082 + Transib5 DNA Transib 2795 2844 -157 5 596 17592 60 50 5 chr3RHet 1450423 1452738 -1064769 - ACCORD2_I LTR Gypsy -1128 6084 3664 5 596 9425 70 70 15 chr3RHet 1452738 1454091 -1063416 - ACCORD2_I LTR Gypsy -3949 3263 1836 5 596 2652 90 64 50 chr3RHet 1454061 1454576 -1062931 - ACCORD2_I LTR Gypsy -5184 2028 1507 5 596 9369 34 1 0 chr3RHet 1454620 1455724 -1061783 - PROTOP_A DNA P 0 1105 1 5 596 3851 140 80 52 chr3RHet 1455768 1456894 -1060613 - ACCORD2_I LTR Gypsy -5845 1367 1 5 596 785 153 83 30 chr3RHet 1456894 1457062 -1060445 - ACCORD2_LTR LTR Gypsy 0 215 39 5 596 2578 285 103 13 chr3RHet 1457144 1458229 -1059278 + G_DM LINE Jockey 1320 2502 -1844 5 596 649 170 48 0 chr3RHet 1458515 1458662 -1058845 - Gypsy8_I LTR Gypsy -4187 160 7 5 596 1138 104 5 86 chr3RHet 1458659 1458869 -1058638 - Gypsy8_LTR LTR Gypsy -111 193 1 5 596 777 128 15 118 chr3RHet 1458872 1459067 -1058440 - Gypsy8_I LTR Gypsy -3 4344 4170 5 596 507 124 0 0 chr3RHet 1459144 1459233 -1058274 - Gypsy8_I LTR Gypsy -171 4176 4088 5 596 3747 158 20 45 chr3RHet 1459266 1460047 -1057460 - Gypsy8_I LTR Gypsy -179 4168 3407 5 596 5158 217 78 46 chr3RHet 1460113 1461862 -1055645 - Gypsy8_I LTR Gypsy -4284 2369 230 5 596 902 132 116 51 chr3RHet 1462185 1462400 -1055107 - Gypsy8_I LTR Gypsy -4118 229 1 5 596 1858 125 0 44 chr3RHet 1462400 1462717 -1054790 - Gypsy8_LTR LTR Gypsy 0 304 2 5 596 2468 261 74 5 chr3RHet 1462720 1463623 -1053884 + G_DM LINE Jockey 3034 3735 -611 5 596 10454 79 50 2 chr3RHet 1465061 1466498 -1051009 + DMCR1A LINE CR1 1082 2587 -1883 5 596 10383 74 60 8 chr3RHet 1466508 1467779 -1049728 + DMCR1A LINE CR1 2690 4003 -467 5 596 260 27 27 0 chr3RHet 1467779 1467816 -1049691 + (TTTAA)n Simple_repeat Simple_repeat 2 39 0 5 596 10383 74 60 8 chr3RHet 1467816 1467975 -1049532 + DMCR1A LINE CR1 4004 4194 -276 5 596 1378 61 198 0 chr3RHet 1468018 1468265 -1049242 + HMSBEAGLE_I LTR Gypsy 3393 3688 -2841 5 596 7160 97 167 81 chr3RHet 1468264 1469613 -1047894 + HMSBEAGLE_I LTR Gypsy 3964 5428 -1101 5 596 444 95 0 31 chr3RHet 1469640 1469705 -1047802 + PROTOP DNA P 3008 3070 -1410 5 596 995 32 73 0 chr3RHet 1469690 1469813 -1047694 + PROTOP DNA P 3324 3455 -1025 5 596 1747 98 134 33 chr3RHet 1469817 1470146 -1047361 + PROTOP DNA P 3995 4356 -124 5 596 5533 101 67 16 chr3RHet 1470178 1471157 -1046350 - M4DM DNA Transib 0 1435 406 5 596 286 233 70 62 chr3RHet 1471168 1471296 -1046211 + TRANSIB4 DNA Transib 1812 1940 -670 5 596 680 24 0 66 chr3RHet 1471280 1471371 -1046136 - M4DM DNA Transib -1047 388 304 5 596 673 110 8 41 chr3RHet 1471370 1471493 -1046014 - M4DM DNA Transib -1316 119 1 5 596 1174 132 79 19 chr3RHet 1471581 1471797 -1045710 + DMLTR5 LTR Gypsy 35 263 -3 5 596 762 112 244 12 chr3RHet 1471800 1471972 -1045535 + HMSBEAGLE_I LTR Gypsy 4 215 -6314 5 596 396 187 37 9 chr3RHet 1471998 1472106 -1045401 + HMSBEAGLE_I LTR Gypsy 617 727 -5802 5 596 210 193 0 0 chr3RHet 1472199 1472256 -1045251 + (CAA)n Simple_repeat Simple_repeat 1 57 0 5 596 1475 181 107 33 chr3RHet 1472328 1472655 -1044852 + HMSBEAGLE_I LTR Gypsy 974 1325 -5204 5 596 9702 14 8 0 chr3RHet 1472655 1473751 -1043756 - PROTOP_A DNA P 0 1105 1 5 596 558 135 125 0 chr3RHet 1473751 1473847 -1043660 + HMSBEAGLE_I LTR Gypsy 1314 1421 -5108 5 596 5330 63 7 6 chr3RHet 1473861 1474535 -1042972 + HMSBEAGLE_I LTR Gypsy 1496 2170 -4359 5 596 6545 86 54 8 chr3RHet 1474530 1475460 -1042047 + HMSBEAGLE_I LTR Gypsy 2428 3400 -3129 5 596 6290 52 112 18 chr3RHet 1475443 1476908 -1040599 + DMCR1A LINE CR1 1600 3202 -1268 5 596 6849 83 23 0 chr3RHet 1476903 1477828 -1039679 + DMCR1A LINE CR1 3445 4390 -80 5 596 24 32 0 0 chr3RHet 1479381 1479412 -1038095 + AT_rich Low_complexity Low_complexity 1 31 0 5 596 247 200 0 0 chr3RHet 1480244 1480299 -1037208 + T-rich Low_complexity Low_complexity 6 60 0 5 596 842 79 31 8 chr3RHet 1480681 1480809 -1036698 - DNAREP1_DM LINE Penelope -284 310 180 5 596 437 220 123 18 chr3RHet 1480806 1480977 -1036530 + DNAREP1_DM LINE Penelope 35 223 -371 5 596 290 336 8 8 chr3RHet 1480975 1481098 -1036409 + DIVER2_I LTR Pao 280 402 -3745 5 596 556 336 22 59 chr3RHet 1481437 1481794 -1035713 + DIVER2_I LTR Pao 1143 1486 -2661 5 596 8640 67 141 36 chr3RHet 1481984 1484360 -1033147 - CIRCE LINE Composite -1440 4916 2291 5 596 39800 11 8 0 chr3RHet 1484359 1488742 -1028765 - BS LINE Jockey -4 5122 707 5 596 3236 19 11 13 chr3RHet 1488736 1489114 -1028393 - BS LINE Jockey -4700 426 50 5 596 1622 26 0 25 chr3RHet 1489542 1489741 -1027766 - G5_DM LINE Jockey -12 4844 4651 5 596 22 0 0 0 chr3RHet 1490135 1490157 -1027350 + AT_rich Low_complexity Low_complexity 1 22 0 5 596 319 51 0 0 chr3RHet 1490219 1490258 -1027249 - DMCR1A LINE CR1 -1490 2980 2942 5 596 355 247 93 0 chr3RHet 1490401 1490498 -1027009 - DIVER2_I LTR Pao -7 4140 4035 5 596 611 181 565 33 chr3RHet 1491428 1491704 -1025803 + DMCR1A LINE CR1 1844 2266 -2204 5 596 250 196 36 0 chr3RHet 1491859 1491915 -1025592 - NOMAD_I LTR Gypsy -5890 682 625 5 596 23 33 0 0 chr3RHet 1492429 1492459 -1025048 + AT_rich Low_complexity Low_complexity 1 30 0 5 596 42809 5 2 2 chr3RHet 1492484 1497207 -1020300 + DOC LINE Jockey 4 4725 0 5 596 26 0 0 0 chr3RHet 1497404 1497430 -1020077 + AT_rich Low_complexity Low_complexity 1 26 0 5 596 1169 311 25 21 chr3RHet 1497644 1498127 -1019380 + MAX_I LTR Pao 2070 2554 -5360 5 596 258 311 113 0 chr3RHet 1498180 1498286 -1019221 + MAX_I LTR Pao 2756 2873 -5041 5 596 233 229 16 16 chr3RHet 1498649 1498711 -1018796 + MAX_I LTR Pao 3570 3631 -4283 5 596 397 68 0 17 chr3RHet 1499019 1499079 -1018428 - G4_DM LINE Jockey -49 3807 3749 5 596 892 76 0 0 chr3RHet 1499267 1499385 -1018122 - CIRCE LINE Composite -1376 4980 4863 5 596 4396 57 33 28 chr3RHet 1499401 1500000 -1017507 - CIRCE LINE Composite -3567 2789 2188 5 596 11053 76 73 128 chr3RHet 1500003 1502087 -1015420 - CIRCE LINE Composite -4173 2183 214 5 596 476 36 0 0 chr3RHet 1502086 1502142 -1015365 - CIRCE LINE Composite -6300 56 1 5 596 7948 43 0 0 chr3RHet 1502142 1503071 -1014436 - CIRCE LINE Composite 0 6356 5428 5 596 3319 57 11 43 chr3RHet 1503185 1503646 -1013861 - CIRCE LINE Composite -930 5426 4981 5 596 346 244 87 31 chr3RHet 1503967 1504094 -1013413 + DIVER2_I LTR Pao 1847 1980 -2167 5 596 931 281 28 17 chr3RHet 1504088 1504378 -1013129 + DIVER2_I LTR Pao 2150 2442 -1705 5 596 780 266 220 38 chr3RHet 1505053 1505475 -1012032 + DIVER2_I LTR Pao 2423 2921 -1226 5 596 719 263 59 14 chr3RHet 1505473 1505693 -1011814 + DIVER2_I LTR Pao 3425 3654 -493 5 596 788 272 147 0 chr3RHet 1505697 1505921 -1011586 + DIVER2_I LTR Pao 3889 4145 -2 5 596 1066 134 86 0 chr3RHet 1506616 1506803 -1010704 + DNAREP1_DM LINE Penelope 1 203 -391 5 596 31 58 0 0 chr3RHet 1506827 1506879 -1010628 + AT_rich Low_complexity Low_complexity 1 52 0 5 596 59 53 0 0 chr3RHet 1506942 1507036 -1010471 + AT_rich Low_complexity Low_complexity 1 94 0 5 596 1138 159 0 0 chr3RHet 1507068 1507244 -1010263 + MAX_I LTR Pao 4087 4262 -3652 5 596 423 133 0 0 chr3RHet 1507240 1507300 -1010207 + MAX_I LTR Pao 4446 4505 -3409 5 596 698 186 47 121 chr3RHet 1507301 1507533 -1009974 + ACCORD2_LTR LTR Gypsy 1 215 0 5 596 3986 138 85 44 chr3RHet 1507533 1508639 -1008868 + ACCORD2_I LTR Gypsy 1 1367 -5845 5 596 9380 34 1 0 chr3RHet 1508683 1509787 -1007720 + PROTOP_A DNA P 1 1105 0 5 596 5558 183 34 91 chr3RHet 1509877 1511632 -1005875 + ACCORD2_I LTR Gypsy 1608 3263 -3949 5 596 19476 55 47 1 chr3RHet 1511632 1514131 -1003376 + ACCORD2_I LTR Gypsy 3664 6277 -935 5 596 3700 72 2 0 chr3RHet 1514130 1514643 -1002864 + ACCORD2_I LTR Gypsy 6462 6975 -237 5 596 703 196 48 105 chr3RHet 1514679 1514907 -1002600 + ACCORD2_LTR LTR Gypsy 1 215 0 5 596 1738 125 81 15 chr3RHet 1514907 1515454 -1002053 + MAX_I LTR Pao 4503 5123 -2791 5 596 218 259 0 0 chr3RHet 1515760 1515818 -1001689 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 596 2147 106 94 0 chr3RHet 1515826 1516165 -1001342 - DMRT1C LINE R1 -93 5350 4980 5 596 1517 123 43 8 chr3RHet 1516162 1516415 -1001092 - DMRT1C LINE R1 -3173 2270 2009 5 596 1292 97 4 146 chr3RHet 1516408 1516661 -1000846 - DMRT1C LINE R1 -3883 1560 1344 5 596 383 98 0 0 chr3RHet 1516677 1516728 -1000779 - DMRT1C LINE R1 -4080 1363 1313 5 596 3026 103 44 2 chr3RHet 1516730 1517185 -1000322 - DMRT1C LINE R1 -4683 760 287 5 596 2336 127 48 29 chr3RHet 1517188 1517603 -999904 - Invader1_LTR LTR Gypsy 0 423 1 5 596 4206 25 4 2 chr3RHet 1517607 1518088 -999419 - Gypsy_LTR LTR Gypsy 0 482 1 5 596 60101 7 1 0 chr3RHet 1518088 1524589 -992918 - Gypsy_I LTR Gypsy 0 6507 1 5 596 4206 25 4 2 chr3RHet 1524587 1525068 -992439 - Gypsy_LTR LTR Gypsy 0 482 1 5 596 655 132 409 30 chr3RHet 1525074 1525277 -992230 - DMRT1C LINE R1 -5158 285 6 5 596 1349 219 71 42 chr3RHet 1525340 1525789 -991718 + Gypsy_LTR LTR Gypsy 1 462 -20 5 596 23687 161 58 10 chr3RHet 1525795 1529890 -987617 + Gypsy_I LTR Gypsy 364 4654 -1853 5 596 694 216 0 0 chr3RHet 1529894 1530042 -987465 + Gypsy_I LTR Gypsy 5834 5981 -526 5 596 1869 28 0 18 chr3RHet 1530042 1530261 -987246 - ACCORD2_LTR LTR Gypsy 0 215 1 5 596 5762 31 39 3 chr3RHet 1530264 1530985 -986522 - ACCORD2_I LTR Gypsy -4 7208 6462 5 596 43793 32 20 7 chr3RHet 1530984 1536520 -980987 - ACCORD2_I LTR Gypsy -935 6277 1 5 596 1887 9 5 18 chr3RHet 1536520 1536738 -980769 - ACCORD2_LTR LTR Gypsy 0 215 1 5 596 1378 238 50 11 chr3RHet 1536738 1537258 -980249 + Gypsy_I LTR Gypsy 5980 6941 -581 5 596 1163 196 112 58 chr3RHet 1537257 1537669 -979838 + Gypsy_LTR LTR Gypsy 29 462 -20 5 596 544 113 392 0 chr3RHet 1537751 1537923 -979584 - DNAREP1_DM LINE Penelope -5 589 351 5 596 461 147 39 87 chr3RHet 1537919 1538023 -979484 + Gypsy8_LTR LTR Gypsy 206 304 0 5 596 275 170 0 0 chr3RHet 1538023 1538070 -979437 + Gypsy8_I LTR Gypsy 1 47 -4300 5 596 438 298 72 43 chr3RHet 1538537 1538865 -978642 - OSVALDO_I LTR Gypsy -2374 4279 4158 5 596 266 347 51 11 chr3RHet 1538907 1539082 -978425 + OSVALDO_I LTR Gypsy 3811 3992 -2661 5 596 384 167 0 0 chr3RHet 1539202 1539268 -978239 - ROO_I LTR Pao -5735 2521 2456 5 596 5388 132 77 51 chr3RHet 1539350 1540474 -977033 - PROTOP_B DNA P 0 1153 1 5 596 529 304 152 17 chr3RHet 1540591 1541054 -976453 - ROO_I LTR Pao -6201 2055 1530 5 596 330 164 75 83 chr3RHet 1541667 1541787 -975720 - Gypsy8_I LTR Gypsy -4128 219 101 5 596 203 61 0 29 chr3RHet 1541807 1541841 -975666 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 5 596 4333 192 30 30 chr3RHet 1541851 1543185 -974322 - Invader5_I LTR Gypsy -2399 1700 329 5 596 1047 159 191 19 chr3RHet 1543215 1543451 -974056 + GTWIN_LTR LTR Gypsy 60 335 -160 5 596 983 38 128 8 chr3RHet 1543449 1543582 -973925 - DMCR1A LINE CR1 -218 4252 4104 5 596 4573 68 47 6 chr3RHet 1543578 1544664 -972843 + I_DM LINE I 4340 5470 -761 5 596 5633 48 67 1 chr3RHet 1544662 1546010 -971497 + DOC5_DM LINE Jockey 3176 4682 0 5 596 1029 313 51 93 chr3RHet 1546043 1546912 -970595 - BATUMI_I LTR Pao -3308 4655 3824 5 596 3088 51 5 0 chr3RHet 1547236 1547607 -969900 + Baggins1 LINE LOA 5081 5453 0 5 596 3822 309 51 21 chr3RHet 1547798 1550090 -967417 - Invader2_I LTR Gypsy -184 4704 2118 5 596 271 277 0 41 chr3RHet 1550088 1550186 -967321 - MDG3_I LTR Gypsy -2697 2289 2196 5 596 931 138 0 16 chr3RHet 1550197 1550358 -967149 - BS2 LINE Jockey 0 4721 4586 5 596 2929 67 38 1 chr3RHet 1550357 1550742 -966765 - BS2 LINE Jockey -1026 3695 3321 5 596 10867 34 41 0 chr3RHet 1551395 1552702 -964805 + G4_DM LINE Jockey 2387 3746 -110 5 596 8768 74 91 61 chr3RHet 1552703 1554127 -963380 + CIRCE LINE Composite 3515 4980 -1376 5 596 2730 81 67 30 chr3RHet 1554489 1554920 -962587 + CIRCE LINE Composite 4981 5427 -929 5 596 8167 31 0 0 chr3RHet 1555000 1555929 -961578 + CIRCE LINE Composite 5428 6356 0 5 596 436 39 0 0 chr3RHet 1555932 1555984 -961523 + CIRCE LINE Composite 5 56 -6300 5 596 14384 81 58 95 chr3RHet 1555983 1558660 -958847 + CIRCE LINE Composite 214 2789 -3567 5 596 829 76 0 0 chr3RHet 1558676 1558794 -958713 + CIRCE LINE Composite 4863 4980 -1376 5 596 784 28 0 0 chr3RHet 1558982 1559088 -958419 + G4_DM LINE Jockey 3749 3854 -2 5 596 1020 314 23 19 chr3RHet 1559962 1560445 -957062 - MAX_I LTR Pao -5360 2554 2070 5 596 26 0 0 0 chr3RHet 1560659 1560685 -956822 + AT_rich Low_complexity Low_complexity 1 26 0 5 596 25 31 0 0 chr3RHet 1560872 1560904 -956603 + AT_rich Low_complexity Low_complexity 1 32 0 5 596 520 181 565 33 chr3RHet 1561630 1561906 -955601 - DMCR1A LINE CR1 -2204 2266 1844 5 596 319 247 93 0 chr3RHet 1562827 1562924 -954583 + DIVER2_I LTR Pao 4035 4140 -7 5 596 324 26 0 0 chr3RHet 1563067 1563106 -954401 + DMCR1A LINE CR1 2942 2980 -1490 5 596 22 0 0 0 chr3RHet 1563170 1563192 -954315 + AT_rich Low_complexity Low_complexity 1 22 0 5 596 1482 36 0 15 chr3RHet 1563586 1563783 -953724 + G5_DM LINE Jockey 4651 4844 -12 5 596 36 0 0 0 chr3RHet 1564599 1564635 -952872 + AT_rich Low_complexity Low_complexity 1 36 0 5 596 33609 46 47 3 chr3RHet 1565960 1570417 -947090 - DOC3_DM LINE Jockey 0 4740 101 5 596 180 0 0 0 chr3RHet 1570417 1570437 -947070 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 596 33609 46 47 3 chr3RHet 1570437 1570521 -946986 - DOC3_DM LINE Jockey -4640 100 2 5 596 48 18 0 0 chr3RHet 1570535 1570590 -946917 + AT_rich Low_complexity Low_complexity 1 55 0 5 596 332 296 0 34 chr3RHet 1570867 1571014 -946493 + TV1I LTR Gypsy 828 969 -4994 5 596 364 263 0 0 chr3RHet 1571281 1571399 -946108 + TV1I LTR Gypsy 1472 1589 -4374 5 596 1602 246 43 25 chr3RHet 1571874 1572404 -945103 + IDEFIX_I LTR Gypsy 1434 1973 -3655 5 596 1160 64 6 0 chr3RHet 1572402 1572559 -944948 - Baggins1 LINE LOA 0 5453 5296 5 596 1726 79 27 55 chr3RHet 1572561 1572854 -944653 + Gypsy4_LTR LTR Gypsy 1 285 -2 5 74 23581 32 52 10 chr3RHet 1572856 1575985 -941522 + Gypsy4_I LTR Gypsy 1 3263 -3025 5 597 295 27 0 0 chr3RHet 1575985 1576022 -941485 + Gypsy4_I LTR Gypsy 3479 3515 -2773 5 597 2149 54 20 7 chr3RHet 1576010 1576307 -941200 + Gypsy4_I LTR Gypsy 3908 4208 -2080 5 597 1287 50 6 0 chr3RHet 1576295 1576476 -941031 + Gypsy4_I LTR Gypsy 5193 5374 -914 5 597 12507 23 0 1 chr3RHet 1576486 1578011 -939496 + FW_DM LINE Jockey 1 1524 -3168 5 597 6622 21 1 0 chr3RHet 1578005 1578819 -938688 + FW_DM LINE Jockey 2575 3389 -1303 5 597 10487 33 77 12 chr3RHet 1578868 1580316 -937191 + Gypsy4_I LTR Gypsy 1 1541 -4747 5 597 4575 20 0 0 chr3RHet 1580314 1580870 -936637 + FW_DM LINE Jockey 969 1524 -3168 5 597 12377 16 1 0 chr3RHet 1580864 1582348 -935159 + FW_DM LINE Jockey 2575 4059 -633 5 597 1230 50 25 0 chr3RHet 1582344 1582505 -935002 - Baggins1 LINE LOA -1287 4166 4002 5 597 5878 45 31 4 chr3RHet 1582504 1583272 -934235 - Baggins1 LINE LOA -1604 3849 3061 5 597 6001 245 22 22 chr3RHet 1583273 1585215 -932292 + TV1I LTR Gypsy 2293 4233 -1730 5 597 19668 11 2 1 chr3RHet 1585977 1588307 -929200 + DMRT1B LINE R1 2851 5183 0 5 597 192 40 0 0 chr3RHet 1588316 1588341 -929166 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 597 2241 290 12 10 chr3RHet 1588496 1589555 -927952 + QUASIMODO_I LTR Gypsy 4671 5731 -329 5 597 1845 54 191 2 chr3RHet 1589556 1589958 -927549 - TC1_DM DNA Tc1 -4 1662 1185 5 597 4577 60 8 0 chr3RHet 1589946 1590568 -926939 - TC1_DM DNA Tc1 -1033 633 7 5 597 5937 89 84 55 chr3RHet 1591167 1592288 -925219 + PROTOP_B DNA P 1 1153 0 5 597 556 144 0 0 chr3RHet 1592642 1592739 -924768 + DMCR1A LINE CR1 2984 3080 -1390 5 597 217 143 45 60 chr3RHet 1593156 1593223 -924284 + (TATAA)n Simple_repeat Simple_repeat 2 67 0 5 597 1572 156 169 12 chr3RHet 1593224 1593708 -923799 + DMCR1A LINE CR1 3756 4315 -155 5 597 2854 157 229 3 chr3RHet 1594010 1594660 -922847 - DMRT1B LINE R1 -1077 4106 3310 5 597 3091 186 222 11 chr3RHet 1594681 1595807 -921700 - DMRT1B LINE R1 -1994 3189 1826 5 597 436 206 10 0 chr3RHet 1595827 1595924 -921583 - DMRT1B LINE R1 -5084 99 2 5 597 638 228 127 22 chr3RHet 1596219 1596499 -921008 + GTWIN_LTR LTR Gypsy 27 344 -138 5 597 247 181 229 0 chr3RHet 1596644 1596727 -920780 + Gypsy_I LTR Gypsy 1 102 -6405 5 597 23 0 0 0 chr3RHet 1597229 1597252 -920255 + AT_rich Low_complexity Low_complexity 1 23 0 5 597 1134 178 220 12 chr3RHet 1597479 1597815 -919692 - DNAREP1_DM LINE Penelope -4 590 185 5 597 377 113 0 0 chr3RHet 1597962 1598015 -919492 + DMCR1A LINE CR1 1030 1082 -3388 5 597 830 132 90 0 chr3RHet 1598041 1598206 -919301 + DMCR1A LINE CR1 1192 1371 -3099 5 597 1015 72 65 0 chr3RHet 1598206 1598359 -919148 + DNAREP1_DM LINE Penelope 1 163 -431 5 597 528 154 96 51 chr3RHet 1598358 1598515 -918992 + DNAREP1_DM LINE Penelope 100 263 -331 5 597 300 179 119 0 chr3RHet 1598551 1598618 -918889 + DMCR1A LINE CR1 3399 3473 -997 5 597 21 0 0 0 chr3RHet 1598624 1598645 -918862 + AT_rich Low_complexity Low_complexity 1 21 0 5 597 554 119 9 102 chr3RHet 1599002 1599452 -918055 + CT-rich Low_complexity Low_complexity 1 408 0 5 597 977 170 24 8 chr3RHet 1599480 1599732 -917775 + CT-rich Low_complexity Low_complexity 1 256 0 5 597 388 290 261 22 chr3RHet 1599897 1600215 -917292 + MICROPIA_I LTR Gypsy 1286 1679 -2797 5 597 7911 35 17 1 chr3RHet 1600218 1601213 -916294 - DMCR1A LINE CR1 0 4470 3460 5 597 6749 15 34 0 chr3RHet 1601212 1602033 -915474 - DMCR1A LINE CR1 -1534 2936 2088 5 597 7302 17 33 0 chr3RHet 1602031 1602918 -914589 - DMCR1A LINE CR1 -2546 1924 1009 5 597 1492 80 0 0 chr3RHet 1602957 1603157 -914350 - STALKER4_LTR LTR Gypsy -29 373 174 5 597 1573 80 0 49 chr3RHet 1603166 1603430 -914077 - Gypsy7_LTR LTR Gypsy 0 251 1 5 597 1090 104 0 0 chr3RHet 1603430 1603603 -913904 - STALKER4_LTR LTR Gypsy -229 173 1 5 597 502 145 39 174 chr3RHet 1603603 1603862 -913645 - STALKER4_I LTR Gypsy 0 6530 6307 5 597 969 249 69 38 chr3RHet 1603918 1604339 -913168 - Gypsy_LTR LTR Gypsy -20 462 29 5 597 4610 85 11 22 chr3RHet 1604517 1605248 -912259 - CIRCE LINE Composite -1376 4980 4258 5 597 7618 56 34 29 chr3RHet 1605250 1606366 -911141 - CIRCE LINE Composite -2314 4042 2921 5 597 236 0 0 103 chr3RHet 1606365 1606404 -911103 + ROO_I LTR Pao 182 216 -8040 5 597 10726 31 13 7 chr3RHet 1608514 1609891 -907616 + ROO_I LTR Pao 1167 2552 -5704 5 597 11872 26 3 15 chr3RHet 1609879 1611428 -906079 + ROO_I LTR Pao 2693 4222 -4034 5 597 1051 30 0 0 chr3RHet 1611427 1611558 -905949 + ROO_LTR LTR Pao 298 428 0 5 597 555 40 0 0 chr3RHet 1611558 1611632 -905875 + DIVER2_LTR LTR Pao 312 385 0 5 597 3644 52 0 2 chr3RHet 1611632 1612072 -905435 + DIVER2_I LTR Pao 1 439 -3708 5 597 13617 35 20 7 chr3RHet 1612230 1613909 -903598 + ROO_I LTR Pao 859 2559 -5697 5 597 9486 24 0 16 chr3RHet 1613890 1615041 -902466 + ROO_I LTR Pao 2693 3824 -4432 5 597 3104 52 5 54 chr3RHet 1615037 1615463 -902044 + DIVER2_I LTR Pao 1339 1743 -2404 5 597 1236 28 7 0 chr3RHet 1615463 1615608 -901899 + DIVER2_I LTR Pao 1905 2050 -2097 5 597 10448 31 12 11 chr3RHet 1615608 1616852 -900655 + DIVER2_I LTR Pao 2167 3411 -736 5 597 3334 21 0 0 chr3RHet 1616854 1617226 -900281 + DIVER2_LTR LTR Pao 1 372 -13 5 597 323 68 0 43 chr3RHet 1617240 1617286 -900221 - CIRCE LINE Composite -4429 1927 1884 5 597 270 301 26 26 chr3RHet 1617286 1617347 -900160 - Gypsy12_I LTR Gypsy -1596 3936 3835 5 597 6326 48 36 113 chr3RHet 1617353 1618342 -899165 - CIRCE LINE Composite -4471 1885 973 5 597 7062 56 57 29 chr3RHet 1618469 1619412 -898095 - CIRCE LINE Composite -5386 970 1 5 597 6097 39 32 0 chr3RHet 1619439 1620161 -897346 - CIRCE LINE Composite -79 6277 5533 5 597 7443 181 52 124 chr3RHet 1620623 1623146 -894361 - CIRCE LINE Composite -1097 5259 2921 5 597 3474 29 6 32 chr3RHet 1623145 1623611 -893896 + ROO_I LTR Pao 182 728 -7528 5 597 327 136 0 0 chr3RHet 1623611 1623670 -893837 + (CAG)n Simple_repeat Simple_repeat 1 59 0 5 597 505 199 106 130 chr3RHet 1623670 1623737 -893770 + ROO_I LTR Pao 729 795 -7461 5 597 929 109 0 0 chr3RHet 1623955 1624083 -893424 - CIRCE LINE Composite -2107 4249 4122 5 597 296 85 0 60 chr3RHet 1624083 1624133 -893374 - CIRCE LINE Composite -2794 3562 3516 5 597 772 274 119 31 chr3RHet 1624129 1624581 -892926 + MICROPIA_I LTR Gypsy 1188 1679 -2797 5 597 451 35 0 0 chr3RHet 1624584 1624641 -892866 - DMCR1A LINE CR1 0 4470 4414 5 597 5096 72 7 22 chr3RHet 1624640 1625363 -892144 - CIRCE LINE Composite -1387 4969 4258 5 597 7416 56 58 87 chr3RHet 1625365 1626520 -890987 - CIRCE LINE Composite -2314 4042 2921 5 597 3489 33 178 26 chr3RHet 1626519 1626985 -890522 + ROO_I LTR Pao 182 640 -7616 5 597 327 136 0 0 chr3RHet 1626985 1627044 -890463 + (CAG)n Simple_repeat Simple_repeat 1 59 0 5 597 3489 33 178 26 chr3RHet 1627044 1627111 -890396 + ROO_I LTR Pao 641 795 -7461 5 597 929 109 0 0 chr3RHet 1627329 1627457 -890050 - CIRCE LINE Composite -2107 4249 4122 5 597 296 85 0 60 chr3RHet 1627457 1627507 -890000 - CIRCE LINE Composite -2794 3562 3516 5 597 772 274 119 31 chr3RHet 1627503 1627955 -889552 + MICROPIA_I LTR Gypsy 1188 1679 -2797 5 597 8428 42 17 1 chr3RHet 1627958 1628966 -888541 - DMCR1A LINE CR1 0 4470 3447 5 597 4651 22 159 2 chr3RHet 1628952 1629574 -887933 - DMCR1A LINE CR1 -1534 2936 2217 5 597 1394 31 0 0 chr3RHet 1629575 1629737 -887770 - DMCR1A LINE CR1 -2629 1841 1680 5 597 575 29 0 14 chr3RHet 1629735 1629806 -887701 - DMCR1A LINE CR1 -4400 70 1 5 597 593 95 67 0 chr3RHet 1629848 1629953 -887554 - Gypsy12A_LTR LTR Gypsy -481 1799 1688 5 597 2376 169 46 40 chr3RHet 1629960 1630662 -886845 - Gypsy12A_LTR LTR Gypsy -1638 642 1 5 597 255 289 15 15 chr3RHet 1630710 1630853 -886654 + IDEFIX_I LTR Gypsy 1590 1690 -3938 5 597 244 242 22 0 chr3RHet 1631577 1631668 -885839 + A-rich Low_complexity Low_complexity 4 96 0 5 597 259 376 28 28 chr3RHet 1632392 1632603 -884904 + TIRANT_I LTR Gypsy 1723 1933 -5759 5 597 274 267 19 19 chr3RHet 1634069 1634176 -883331 + Gypsy5_I LTR Gypsy 2223 2329 -4180 5 597 646 285 23 27 chr3RHet 1634181 1634444 -883063 + Gypsy5_I LTR Gypsy 2632 2893 -3616 5 597 2431 304 62 53 chr3RHet 1634433 1636365 -881142 + Gypsy5_I LTR Gypsy 2959 4886 -1623 5 597 22 35 0 0 chr3RHet 1636716 1636745 -880762 + AT_rich Low_complexity Low_complexity 1 29 0 5 597 1975 318 52 31 chr3RHet 1637781 1638929 -878578 - Gypsy12_I LTR Gypsy -1428 4118 2947 5 597 226 307 88 88 chr3RHet 1639467 1639706 -877801 - Gypsy12_I LTR Gypsy -3627 1919 1681 5 597 13456 131 37 5 chr3RHet 1640559 1642713 -874794 + DMRT1B LINE R1 1 2223 -2960 5 597 7616 117 50 0 chr3RHet 1642711 1644501 -873006 + DMRT1B LINE R1 2332 4210 -973 5 597 513 95 0 0 chr3RHet 1644500 1644574 -872933 - Gypsy8_I LTR Gypsy -248 4099 4026 5 597 541 56 0 53 chr3RHet 1644681 1644775 -872732 - Gypsy8_I LTR Gypsy -928 3419 3331 5 597 237 271 0 0 chr3RHet 1645097 1645230 -872277 + (CGG)n Simple_repeat Simple_repeat 3 135 0 5 597 919 153 26 16 chr3RHet 1645272 1645486 -872021 - Gypsy8_I LTR Gypsy -1009 3338 2986 5 597 2612 98 5 10 chr3RHet 1645497 1645887 -871620 - Gypsy8_I LTR Gypsy -1631 2716 2329 5 597 326 109 0 0 chr3RHet 1645889 1645935 -871572 - Gypsy8_I LTR Gypsy -2420 1927 1882 5 597 3655 147 29 46 chr3RHet 1646073 1646937 -870570 - Gypsy8_I LTR Gypsy -2800 1547 1035 5 597 2544 190 49 1 chr3RHet 1646945 1647721 -869786 - Gypsy8_I LTR Gypsy -3311 1036 708 5 597 2812 34 3 38 chr3RHet 1647721 1648093 -869414 - Gypsy8_I LTR Gypsy -3759 588 230 5 597 1018 283 37 19 chr3RHet 1648177 1648551 -868956 - OSVALDO_I LTR Gypsy -5865 788 408 5 597 1203 169 0 37 chr3RHet 1649115 1649360 -868147 - Gypsy8_I LTR Gypsy -4111 236 1 5 597 968 178 26 31 chr3RHet 1649360 1649571 -867936 - Gypsy8_LTR LTR Gypsy -94 210 1 5 597 3716 118 47 12 chr3RHet 1649571 1650141 -867366 + DMRT1B LINE R1 4594 5183 0 5 597 461 223 19 0 chr3RHet 1650364 1650467 -867040 + DMRT1A LINE R1 227 331 -4852 5 597 4227 260 121 14 chr3RHet 1650662 1652549 -864958 + DMRT1A LINE R1 813 2876 -2307 5 597 6799 198 70 1 chr3RHet 1652545 1653999 -863508 + DMRT1A LINE R1 3381 4934 -249 5 597 3622 44 123 38 chr3RHet 1654084 1654605 -862902 + PROTOP_B DNA P 1 565 -588 5 597 2416 14 0 27 chr3RHet 1654601 1654892 -862615 - BATUMI_I LTR Pao -679 7284 7002 5 597 50116 69 73 49 chr3RHet 1654892 1662669 -854838 - BATUMI_I LTR Pao 0 7963 1 5 597 2417 21 0 40 chr3RHet 1662669 1662972 -854535 - BATUMI_I LTR Pao -679 7284 6994 5 597 3454 50 143 4 chr3RHet 1662956 1663482 -854025 + PROTOP_B DNA P 553 1151 -2 5 597 4155 111 30 23 chr3RHet 1663497 1664154 -853353 + DMRT1C LINE R1 40 701 -4742 5 597 2093 102 0 32 chr3RHet 1664152 1664498 -853009 + DMRT1C LINE R1 1380 1714 -3729 5 597 1774 38 0 0 chr3RHet 1664484 1664694 -852813 + DMRT1C LINE R1 1988 2197 -3246 5 597 1709 78 30 0 chr3RHet 1664692 1664922 -852585 + DMRT1C LINE R1 2397 2633 -2810 5 597 1040 114 0 0 chr3RHet 1664983 1665132 -852375 + DMRT1C LINE R1 2634 2782 -2661 5 597 1413 99 148 4 chr3RHet 1665107 1665350 -852157 + DMRT1C LINE R1 2986 3263 -2180 5 597 901 321 14 9 chr3RHet 1665331 1665677 -851830 - Gypsy_I LTR Gypsy -2329 4178 3831 5 597 365 164 0 16 chr3RHet 1665685 1665747 -851760 - DMLTR5 LTR Gypsy -166 100 40 5 597 8901 36 65 0 chr3RHet 1666122 1667208 -850299 + Baggins1 LINE LOA 4120 5275 -178 5 597 315 215 89 65 chr3RHet 1667242 1667411 -850096 - NINJA_LTR LTR Pao -144 173 1 5 597 5965 94 47 1 chr3RHet 1667411 1668377 -849130 - NINJA_I LTR Pao 0 6011 5002 5 597 9165 93 46 0 chr3RHet 1668377 1669726 -847781 - NINJA_I LTR Pao -1403 4608 3198 5 597 532 67 247 0 chr3RHet 1669721 1669810 -847697 - NINJA_I LTR Pao -4604 1407 1297 5 597 9149 17 0 0 chr3RHet 1669810 1670915 -846592 - PROTOP_A DNA P 0 1105 1 5 597 3438 98 44 0 chr3RHet 1670915 1671433 -846074 - NINJA_I LTR Pao -4707 1304 764 5 597 1564 171 23 17 chr3RHet 1671420 1671772 -845735 - NINJA_I LTR Pao -5405 606 253 5 597 330 96 0 19 chr3RHet 1671775 1671828 -845679 - NINJA_I LTR Pao -5957 54 3 5 597 468 225 92 75 chr3RHet 1671845 1672138 -845369 - NINJA_LTR LTR Pao -19 298 1 5 597 383 154 89 111 chr3RHet 1673043 1673233 -844274 + DNAREP1_DM LINE Penelope 99 284 -310 5 597 796 204 211 35 chr3RHet 1673233 1673518 -843989 + Gypsy5_I LTR Gypsy 4197 4531 -1978 5 597 449 213 18 18 chr3RHet 1673554 1673664 -843843 + Gypsy5_I LTR Gypsy 4741 4850 -1659 5 597 650 139 30 24 chr3RHet 1674448 1674617 -842890 - TLD2 Unknown Unknown -31 187 18 5 597 255 242 32 32 chr3RHet 1674619 1674713 -842794 - Gypsy4_I LTR Gypsy -3675 2613 2520 5 597 1186 108 168 5 chr3RHet 1675642 1675856 -841651 - PROTOP DNA P 0 4480 4232 5 597 2128 129 80 9 chr3RHet 1675849 1676272 -841235 - FB4_DM DNA Tc1 -1330 2759 2307 5 597 272 324 0 7 chr3RHet 1676272 1676412 -841095 + HMSBEAGLE_I LTR Gypsy 2660 2798 -3731 5 597 945 287 19 12 chr3RHet 1676590 1677013 -840494 + HMSBEAGLE_I LTR Gypsy 3109 3534 -2995 5 597 282 274 14 14 chr3RHet 1677062 1677201 -840306 + Gypsy7_I LTR Gypsy 2963 3066 -1918 5 597 674 349 37 32 chr3RHet 1677316 1678359 -839148 + HMSBEAGLE_I LTR Gypsy 4695 5743 -786 5 597 316 68 0 0 chr3RHet 1680418 1680462 -837045 + DNAREP1_DM LINE Penelope 1 44 -550 5 597 818 127 69 52 chr3RHet 1680463 1680637 -836870 + DNAREP1_DM LINE Penelope 347 523 -71 5 597 480 136 57 37 chr3RHet 1680706 1680843 -836664 + DNAREP1_DM LINE Penelope 141 332 -262 5 597 354 61 0 0 chr3RHet 1680892 1680941 -836566 + DNAREP1_DM LINE Penelope 546 594 0 5 597 358 240 99 0 chr3RHet 1681488 1681609 -835898 + DNAREP1_DM LINE Penelope 1 133 -461 5 597 26 64 0 0 chr3RHet 1681894 1681941 -835566 + AT_rich Low_complexity Low_complexity 1 47 0 5 597 316 68 0 0 chr3RHet 1683818 1683862 -833645 + DNAREP1_DM LINE Penelope 1 44 -550 5 597 818 127 69 52 chr3RHet 1683863 1684037 -833470 + DNAREP1_DM LINE Penelope 347 523 -71 5 597 480 136 57 37 chr3RHet 1684106 1684243 -833264 + DNAREP1_DM LINE Penelope 141 332 -262 5 597 354 61 0 0 chr3RHet 1684292 1684341 -833166 + DNAREP1_DM LINE Penelope 546 594 0 5 597 343 248 99 0 chr3RHet 1684889 1685010 -832497 + DNAREP1_DM LINE Penelope 1 133 -461 5 597 26 64 0 0 chr3RHet 1685297 1685344 -832163 + AT_rich Low_complexity Low_complexity 1 47 0 5 597 912 60 26 41 chr3RHet 1686916 1687196 -830311 + (TA)n Simple_repeat Simple_repeat 1 275 0 5 597 2076 90 45 28 chr3RHet 1688904 1689259 -828248 - DNAREP1_DM LINE Penelope -31 563 203 5 597 2146 144 83 17 chr3RHet 1689260 1689670 -827837 + DMCR1A LINE CR1 663 1099 -3371 5 597 22 35 0 0 chr3RHet 1689965 1689994 -827513 + AT_rich Low_complexity Low_complexity 1 29 0 5 597 1604 160 259 5 chr3RHet 1690401 1691073 -826434 + DMCR1A LINE CR1 1754 2596 -1874 5 597 2656 152 88 27 chr3RHet 1691071 1691673 -825834 + DMCR1A LINE CR1 3622 4260 -210 5 597 268 331 28 22 chr3RHet 1691861 1692040 -825467 + Gypsy12_I LTR Gypsy 3110 3289 -2257 5 597 241 309 64 0 chr3RHet 1692282 1692376 -825131 + Gypsy12_I LTR Gypsy 3530 3629 -1917 5 597 1643 117 173 3 chr3RHet 1693111 1693446 -824061 + DNAREP1_DM LINE Penelope 202 593 -1 5 597 2948 132 182 18 chr3RHet 1693716 1694802 -822705 - DMRT1C LINE R1 -1507 3936 2672 5 597 753 183 351 0 chr3RHet 1694803 1695062 -822445 - DMRT1C LINE R1 -2931 2512 2163 5 597 1520 44 141 4 chr3RHet 1695069 1695318 -822189 + Transib5 DNA Transib 43 325 -2676 5 597 14584 59 59 5 chr3RHet 1695316 1697459 -820048 + Transib5 DNA Transib 734 2991 -10 5 597 256 100 0 0 chr3RHet 1697587 1697627 -819880 - BARI1 DNA Tc1 -1708 42 3 5 597 3236 24 2 0 chr3RHet 1697595 1698004 -819503 + IDEFIX_LTR LTR Gypsy 1 410 -184 5 597 22 35 0 0 chr3RHet 1698191 1698220 -819287 + AT_rich Low_complexity Low_complexity 1 29 0 5 597 364 309 24 24 chr3RHet 1698732 1698901 -818606 + MAX_I LTR Pao 2135 2303 -5611 5 597 382 279 85 28 chr3RHet 1698924 1699101 -818406 + MAX_I LTR Pao 2417 2603 -5311 5 597 272 284 83 28 chr3RHet 1699644 1699789 -817718 + MAX_I LTR Pao 3570 3722 -4192 5 597 1079 107 128 20 chr3RHet 1700954 1701207 -816300 + DNAREP1_DM LINE Penelope 76 301 -293 5 597 749 141 0 0 chr3RHet 1701209 1701337 -816170 + DMCR1A LINE CR1 1226 1353 -3117 5 597 1721 126 85 54 chr3RHet 1701331 1701683 -815824 + DNAREP1_DM LINE Penelope 188 550 -44 5 74 2139 132 81 121 chr3RHet 1703351 1703970 -813537 - DNAREP1_DM LINE Penelope 0 594 1 5 598 34 55 0 0 chr3RHet 1704761 1704816 -812691 + AT_rich Low_complexity Low_complexity 1 55 0 5 598 24 32 0 0 chr3RHet 1704903 1704934 -812573 + AT_rich Low_complexity Low_complexity 1 31 0 5 598 227 67 0 0 chr3RHet 1706137 1706167 -811340 - Gypsy10_I LTR Gypsy -478 4800 4771 5 598 493 81 0 39 chr3RHet 1706168 1706245 -811262 - Gypsy12A_LTR LTR Gypsy 0 2280 2207 5 598 1043 117 63 55 chr3RHet 1706248 1706502 -811005 - Gypsy12A_LTR LTR Gypsy -638 1642 1387 5 598 2140 134 21 70 chr3RHet 1706741 1707256 -810251 - Gypsy12A_LTR LTR Gypsy -918 1362 873 5 598 1772 83 74 30 chr3RHet 1707256 1707555 -809952 - Gypsy12A_LTR LTR Gypsy -1961 319 8 5 598 232 200 20 0 chr3RHet 1707605 1707655 -809852 - Gypsy10_I LTR Gypsy -878 4400 4350 5 598 1537 169 0 24 chr3RHet 1707721 1708012 -809495 - GTWIN_I LTR Gypsy -3969 2452 2169 5 598 327 232 12 12 chr3RHet 1708210 1708293 -809214 - Gypsy_LTR LTR Gypsy -371 111 29 5 598 616 157 37 0 chr3RHet 1708365 1708473 -809034 - GTWIN_I LTR Gypsy -82 6339 6228 5 598 3888 215 68 17 chr3RHet 1708522 1709600 -807907 - GTWIN_I LTR Gypsy -931 6591 4931 5 598 329 146 0 0 chr3RHet 1709650 1709705 -807802 - GTWIN_I LTR Gypsy -1663 4758 4704 5 598 7361 43 55 26 chr3RHet 1709771 1710845 -806662 + PROTOP_A DNA P 1 1105 0 5 598 257 282 99 33 chr3RHet 1710845 1710964 -806543 + T412LTR LTR LTR 60 186 -295 5 598 243 304 21 36 chr3RHet 1710858 1710998 -806509 + Gypsy11_LTR LTR Gypsy 100 237 -215 5 598 1880 108 44 28 chr3RHet 1711008 1711369 -806138 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 598 5676 227 152 75 chr3RHet 1711369 1714293 -803214 + ROVER-I_DM LTR Gypsy 1 3151 -3433 5 598 1653 289 5 5 chr3RHet 1714299 1714887 -802620 + ROVER-I_DM LTR Gypsy 1048 1635 -4949 5 598 12208 193 33 1 chr3RHet 1714891 1718042 -799465 + ROVER-I_DM LTR Gypsy 2056 5308 -1276 5 598 2532 163 40 9 chr3RHet 1718077 1718654 -798853 + ROVER-I_DM LTR Gypsy 5990 6584 0 5 598 1760 111 71 28 chr3RHet 1718654 1719006 -798501 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 598 393 216 24 184 chr3RHet 1719006 1720183 -797324 + ROVER-I_DM LTR Gypsy 1 988 -5596 5 598 1219 66 5 0 chr3RHet 1720188 1720385 -797122 - S_DM DNA Tc1 -1463 273 76 5 598 34108 1 0 0 chr3RHet 1720394 1725112 -792395 + DOC LINE Jockey 4 4720 -5 5 598 610 70 0 0 chr3RHet 1725110 1725196 -792311 + S_DM DNA Tc1 1651 1736 0 5 598 5787 6 1 5 chr3RHet 1725206 1725866 -791641 - QUASIMODO_LTR LTR Gypsy 0 658 1 5 598 4825 32 2 2 chr3RHet 1725883 1726477 -791030 - IDEFIX_LTR LTR Gypsy 0 594 1 5 598 7072 28 1 2 chr3RHet 1726477 1727370 -790137 - IDEFIX_I LTR Gypsy 0 5628 4737 5 598 11131 40 1 7 chr3RHet 1727367 1728796 -788711 - IDEFIX_I LTR Gypsy -1395 4233 2814 5 598 6712 17 3 0 chr3RHet 1728790 1729573 -787934 - IDEFIX_I LTR Gypsy -2941 2687 1903 5 598 2206 45 21 3 chr3RHet 1729549 1729840 -787667 - IDEFIX_I LTR Gypsy -5332 296 1 5 598 25 0 0 0 chr3RHet 1730200 1730225 -787282 + AT_rich Low_complexity Low_complexity 1 25 0 5 598 4645 34 2 37 chr3RHet 1730415 1731031 -786476 - IDEFIX_LTR LTR Gypsy 0 594 1 5 598 258 125 0 0 chr3RHet 1730999 1731039 -786468 + BARI1 DNA Tc1 3 42 -1708 5 598 287 149 0 0 chr3RHet 1731102 1731149 -786358 + GTWIN_I LTR Gypsy 4931 4977 -1444 5 598 22 0 0 0 chr3RHet 1731189 1731211 -786296 + AT_rich Low_complexity Low_complexity 1 22 0 5 598 205 191 0 0 chr3RHet 1731266 1731308 -786199 + A-rich Low_complexity Low_complexity 1 42 0 5 598 307 260 9 71 chr3RHet 1731436 1731548 -785959 + MDG1_I LTR Gypsy 1358 1462 -5134 5 598 980 214 109 17 chr3RHet 1731662 1732040 -785467 + MDG1_I LTR Gypsy 1661 2144 -4452 5 598 287 151 19 0 chr3RHet 1732040 1732093 -785414 + DMLTR5 LTR Gypsy 1 54 -212 5 598 697 41 380 0 chr3RHet 1732103 1732245 -785262 + HMSBEAGLE_I LTR Gypsy 44 240 -6289 5 598 809 116 28 120 chr3RHet 1732235 1732451 -785056 + HMSBEAGLE_I LTR Gypsy 532 727 -5802 5 598 208 234 0 0 chr3RHet 1732507 1732554 -784953 + (CAA)n Simple_repeat Simple_repeat 3 49 0 5 598 355 103 0 0 chr3RHet 1732554 1732622 -784885 + HMSBEAGLE_I LTR Gypsy 708 775 -5754 5 598 688 46 62 0 chr3RHet 1732625 1732755 -784752 + (TTA)n Simple_repeat Simple_repeat 3 140 0 5 598 7427 57 49 7 chr3RHet 1732755 1733811 -783696 + HMSBEAGLE_I LTR Gypsy 976 2107 -4422 5 598 17112 39 20 7 chr3RHet 1733824 1736002 -781505 - IDEFIX_I LTR Gypsy -3422 2206 1 5 598 25 0 0 0 chr3RHet 1736339 1736364 -781143 + AT_rich Low_complexity Low_complexity 1 25 0 5 598 4823 32 2 2 chr3RHet 1736534 1737128 -780379 - IDEFIX_LTR LTR Gypsy 0 594 1 5 598 258 125 0 0 chr3RHet 1737096 1737136 -780371 + BARI1 DNA Tc1 3 42 -1708 5 598 264 170 0 0 chr3RHet 1737199 1737246 -780261 + GTWIN_I LTR Gypsy 4931 4977 -1444 5 598 212 167 0 0 chr3RHet 1737364 1737406 -780101 + A-rich Low_complexity Low_complexity 1 42 0 5 598 315 231 105 65 chr3RHet 1737493 1737646 -779861 + MDG1_I LTR Gypsy 1304 1462 -5134 5 598 983 211 109 17 chr3RHet 1737760 1738138 -779369 + MDG1_I LTR Gypsy 1661 2144 -4452 5 598 255 170 19 0 chr3RHet 1738138 1738191 -779316 + DMLTR5 LTR Gypsy 1 54 -212 5 598 697 41 380 0 chr3RHet 1738201 1738343 -779164 + HMSBEAGLE_I LTR Gypsy 44 240 -6289 5 598 809 116 28 120 chr3RHet 1738333 1738549 -778958 + HMSBEAGLE_I LTR Gypsy 532 727 -5802 5 598 208 234 0 0 chr3RHet 1738605 1738652 -778855 + (CAA)n Simple_repeat Simple_repeat 3 49 0 5 598 355 103 0 0 chr3RHet 1738652 1738720 -778787 + HMSBEAGLE_I LTR Gypsy 708 775 -5754 5 598 688 46 62 0 chr3RHet 1738723 1738853 -778654 + (TTA)n Simple_repeat Simple_repeat 3 140 0 5 598 7410 58 49 7 chr3RHet 1738853 1739909 -777598 + HMSBEAGLE_I LTR Gypsy 976 2107 -4422 5 598 17205 37 20 7 chr3RHet 1739922 1742100 -775407 - IDEFIX_I LTR Gypsy -3422 2206 1 5 598 21 0 0 0 chr3RHet 1742506 1742527 -774980 + AT_rich Low_complexity Low_complexity 1 21 0 5 598 4656 30 3 37 chr3RHet 1742717 1743332 -774175 - IDEFIX_LTR LTR Gypsy 0 594 1 5 598 258 125 0 0 chr3RHet 1743300 1743340 -774167 + BARI1 DNA Tc1 3 42 -1708 5 598 264 170 0 0 chr3RHet 1743403 1743450 -774057 + GTWIN_I LTR Gypsy 4931 4977 -1444 5 598 212 167 0 0 chr3RHet 1743568 1743610 -773897 + A-rich Low_complexity Low_complexity 1 42 0 5 598 319 229 110 61 chr3RHet 1743697 1743860 -773647 + MDG1_I LTR Gypsy 1304 1474 -5122 5 598 980 216 109 17 chr3RHet 1743964 1744342 -773165 + MDG1_I LTR Gypsy 1661 2144 -4452 5 598 287 151 19 0 chr3RHet 1744342 1744395 -773112 + DMLTR5 LTR Gypsy 1 54 -212 5 598 1118 59 218 0 chr3RHet 1744405 1744656 -772851 + HMSBEAGLE_I LTR Gypsy 44 349 -6180 5 598 1688 73 0 8 chr3RHet 1744651 1744885 -772622 + HMSBEAGLE_I LTR Gypsy 258 489 -6040 5 598 1028 126 120 95 chr3RHet 1744924 1745241 -772266 + HMSBEAGLE_I LTR Gypsy 403 727 -5802 5 598 322 132 0 0 chr3RHet 1745341 1745409 -772098 + HMSBEAGLE_I LTR Gypsy 708 775 -5754 5 598 560 23 59 44 chr3RHet 1745412 1745548 -771959 + (TTA)n Simple_repeat Simple_repeat 3 140 0 5 598 22 0 0 0 chr3RHet 1745548 1745570 -771937 + AT_rich Low_complexity Low_complexity 1 22 0 5 598 4795 12 33 0 chr3RHet 1745570 1746145 -771362 - IDEFIX_LTR LTR Gypsy 0 594 1 5 598 25882 20 2 2 chr3RHet 1746145 1749291 -768216 - IDEFIX_I LTR Gypsy 0 5628 2485 5 598 41640 1 0 0 chr3RHet 1749296 1753916 -763591 - FW_DM LINE Jockey 0 4692 75 5 598 21385 16 1 6 chr3RHet 1753921 1756435 -761072 - IDEFIX_I LTR Gypsy -3127 2501 1 5 598 25 0 0 0 chr3RHet 1756877 1756902 -760605 + AT_rich Low_complexity Low_complexity 1 25 0 5 598 4669 12 46 0 chr3RHet 1757092 1757660 -759847 - IDEFIX_LTR LTR Gypsy 0 594 1 5 598 273 119 0 0 chr3RHet 1757628 1757670 -759837 + BARI1 DNA Tc1 3 44 -1706 5 598 423 65 65 0 chr3RHet 1757680 1757773 -759734 + (TTA)n Simple_repeat Simple_repeat 3 101 0 5 598 7680 68 105 3 chr3RHet 1757773 1760065 -757442 + HMSBEAGLE_I LTR Gypsy 976 3501 -3028 5 598 3059 77 0 0 chr3RHet 1760064 1760454 -757053 + HMSBEAGLE_I LTR Gypsy 4263 4652 -1877 5 598 4453 69 2 0 chr3RHet 1760452 1761016 -756491 + HMSBEAGLE_I LTR Gypsy 4518 5082 -1447 5 598 801 196 11 26 chr3RHet 1761071 1761260 -756247 + MDG1_I LTR Gypsy 2895 3080 -3516 5 598 311 212 54 131 chr3RHet 1761270 1761400 -756107 + Gypsy8_LTR LTR Gypsy 1 120 -184 5 598 349 151 27 0 chr3RHet 1761447 1761520 -755987 + Gypsy8_I LTR Gypsy 5 79 -4268 5 598 2056 216 143 1 chr3RHet 1762064 1762821 -754686 + MDG1_I LTR Gypsy 3562 4469 -2144 5 598 330 306 18 9 chr3RHet 1762853 1762962 -754545 + Gypsy_LTR LTR Gypsy 29 138 -344 5 598 284 209 52 121 chr3RHet 1763205 1763379 -754128 - HELENA LINE Jockey 0 661 500 5 598 6345 202 45 24 chr3RHet 1763375 1764694 -752813 + Gypsy_I LTR Gypsy 966 2313 -4194 5 598 325 0 24 0 chr3RHet 1764690 1764731 -752776 - Invader4_I LTR Gypsy -1447 966 925 5 598 606 233 43 30 chr3RHet 1764729 1765001 -752506 + Invader4_I LTR Gypsy 937 1210 -1976 5 598 8511 33 42 3 chr3RHet 1764985 1766274 -751233 + Invader4_I LTR Gypsy 1021 2413 0 5 598 2955 32 0 0 chr3RHet 1766274 1766620 -750887 + Invader4_LTR LTR Gypsy 1 346 0 5 598 12231 90 3 2 chr3RHet 1766626 1768359 -749148 + S_DM DNA Tc1 1 1736 0 5 598 359 162 0 29 chr3RHet 1768359 1768428 -749079 + MDG1_I LTR Gypsy 4544 4610 -1986 5 598 4006 184 78 42 chr3RHet 1768417 1769477 -748030 + DM412 LTR Gypsy 5085 6182 -715 5 598 3445 30 200 0 chr3RHet 1769480 1769939 -747568 + PROTOP_A DNA P 1 551 -554 5 598 811 50 0 0 chr3RHet 1769938 1770037 -747470 + PROTOP_A DNA P 933 1031 -74 5 598 1230 21 0 0 chr3RHet 1770036 1770177 -747330 - PROTOP_A DNA P -964 141 1 5 598 1373 31 0 0 chr3RHet 1770177 1770338 -747169 - PROTOP_A DNA P -944 161 1 5 598 422 20 0 0 chr3RHet 1770338 1770387 -747120 + PROTOP_A DNA P 1055 1104 -1 5 598 558 185 61 44 chr3RHet 1770387 1770568 -746939 + Gypsy11_I LTR Gypsy 2988 3171 -353 5 598 323 100 0 0 chr3RHet 1770627 1770677 -746830 + DM297_LTR LTR Gypsy 365 414 0 5 598 319 168 103 119 chr3RHet 1770685 1771025 -746482 + DM297_I LTR Gypsy 13 330 -5782 5 598 23 33 0 0 chr3RHet 1771039 1771069 -746438 + AT_rich Low_complexity Low_complexity 1 30 0 5 598 6052 168 46 17 chr3RHet 1771111 1772406 -745101 + DM297_I LTR Gypsy 340 1671 -4496 5 598 21 0 0 0 chr3RHet 1772406 1772427 -745080 + AT_rich Low_complexity Low_complexity 1 21 0 5 598 4922 164 77 34 chr3RHet 1772427 1773702 -743805 + DM297_I LTR Gypsy 2130 3882 -2702 5 598 1234 125 0 0 chr3RHet 1773697 1773897 -743610 + DM297_I LTR Gypsy 3579 3778 -2389 5 598 2960 52 0 0 chr3RHet 1774567 1774934 -742573 + FW_DM LINE Jockey 93 459 -4233 5 598 6441 42 76 1 chr3RHet 1774932 1776063 -741444 + DMCR1A LINE CR1 3254 4469 -1 5 598 372 311 217 20 chr3RHet 1776066 1776509 -740998 - MICROPIA_I LTR Gypsy -2797 1679 1150 5 598 377 354 29 20 chr3RHet 1776531 1776874 -740633 - MICROPIA_I LTR Gypsy -3385 1091 746 5 598 2331 134 31 33 chr3RHet 1776990 1777414 -740093 - Invader1_LTR LTR Gypsy 0 423 1 5 598 35 0 0 0 chr3RHet 1777474 1777509 -739998 + AT_rich Low_complexity Low_complexity 1 35 0 5 598 709 79 10 0 chr3RHet 1777509 1777610 -739897 + DMRT1C LINE R1 3489 3590 -1853 5 598 825 62 208 0 chr3RHet 1777608 1777752 -739755 - DOC5_DM LINE Jockey -4092 590 417 5 598 270 200 42 14 chr3RHet 1777749 1777820 -739687 + DMRT1B LINE R1 298 370 -4813 5 598 10659 49 2 40 chr3RHet 1777816 1779356 -738151 + Gypsy7_I LTR Gypsy 17 1498 -3486 5 598 37119 21 10 0 chr3RHet 1779356 1783886 -733621 + FW_DM LINE Jockey 111 4685 -7 5 598 2680 121 42 30 chr3RHet 1784216 1784719 -732788 + DNAREP1_DM LINE Penelope 86 594 0 5 598 225 322 60 27 chr3RHet 1785075 1785225 -732282 + NOMAD_I LTR Gypsy 1408 1562 -5010 5 598 294 211 28 19 chr3RHet 1785328 1785434 -732073 + A-rich Low_complexity Low_complexity 4 110 0 5 598 568 309 116 11 chr3RHet 1785878 1786163 -731344 + NOMAD_I LTR Gypsy 6048 6362 -210 5 598 488 321 0 0 chr3RHet 1787262 1787424 -730083 - NOMAD_I LTR Gypsy -233 6339 6178 5 598 34933 25 16 0 chr3RHet 1787491 1792099 -725408 - DMRT1B LINE R1 -463 4720 1 5 598 3400 33 78 0 chr3RHet 1792474 1792923 -724584 + Invader2_I LTR Gypsy 820 1303 -3289 5 598 6457 38 17 18 chr3RHet 1792928 1793830 -723677 + Invader2_I LTR Gypsy 1624 2524 -2068 5 598 2151 22 11 32 chr3RHet 1793829 1794111 -723396 + DIVER2_LTR LTR Pao 110 385 0 5 598 940 60 361 0 chr3RHet 1794113 1794326 -723181 + DIVER2_I LTR Pao 3 292 -3855 5 598 9543 38 21 18 chr3RHet 1794319 1795577 -721930 + DIVER2_I LTR Pao 482 1743 -2404 5 598 1153 28 7 0 chr3RHet 1795577 1795722 -721785 + DIVER2_I LTR Pao 1905 2050 -2097 5 598 12980 25 4 7 chr3RHet 1795722 1797317 -720190 + DIVER2_I LTR Pao 2167 3756 -391 5 598 3142 24 0 0 chr3RHet 1797345 1797722 -719785 + DIVER2_LTR LTR Pao 1 377 -8 5 598 13239 37 49 3 chr3RHet 1797723 1799557 -717950 + Invader2_I LTR Gypsy 2674 4592 0 5 598 1628 81 25 58 chr3RHet 1799557 1799832 -717675 + Invader2_LTR LTR Gypsy 1 266 0 5 598 257 286 14 28 chr3RHet 1800182 1800326 -717181 + (TTTG)n Simple_repeat Simple_repeat 4 145 0 5 598 2135 320 15 21 chr3RHet 1800435 1801351 -716156 - NOMAD_I LTR Gypsy -1030 5542 4632 5 598 589 305 0 0 chr3RHet 1801597 1801784 -715723 - NOMAD_I LTR Gypsy -5010 1562 1376 5 598 23 0 0 0 chr3RHet 1802351 1802374 -715133 + AT_rich Low_complexity Low_complexity 1 23 0 5 598 341 178 27 0 chr3RHet 1802506 1802579 -714928 + Invader6_I LTR Gypsy 866 940 -3159 5 598 21445 52 36 8 chr3RHet 1802583 1805514 -711993 - DMCR1A LINE CR1 0 4470 1460 5 598 627 85 11 21 chr3RHet 1805546 1805734 -711773 + DNAREP1_DM LINE Penelope 182 405 -189 5 598 29 0 0 0 chr3RHet 1805988 1806017 -711490 + AT_rich Low_complexity Low_complexity 1 29 0 5 598 22 88 0 0 chr3RHet 1806540 1806597 -710910 + AT_rich Low_complexity Low_complexity 1 57 0 5 598 24 32 0 0 chr3RHet 1806742 1806773 -710734 + AT_rich Low_complexity Low_complexity 1 31 0 5 598 376 111 247 0 chr3RHet 1806899 1806980 -710527 - Rehavkus-1_DY DNA Tc1 0 5917 5817 5 598 274 213 93 63 chr3RHet 1806981 1807356 -710151 + FB4_DM DNA Tc1 3311 3699 -390 5 598 768 137 155 0 chr3RHet 1807377 1807545 -709962 - Rehavkus-1_DY DNA Tc1 -5342 273 80 5 598 21 0 0 0 chr3RHet 1807998 1808019 -709488 + AT_rich Low_complexity Low_complexity 1 21 0 5 598 24 0 0 0 chr3RHet 1808100 1808124 -709383 + AT_rich Low_complexity Low_complexity 1 24 0 5 598 3283 110 40 2 chr3RHet 1808788 1809336 -708171 - S_DM DNA Tc1 0 1736 1168 5 598 1656 88 43 7 chr3RHet 1809335 1809634 -707873 + S_DM DNA Tc1 1427 1736 0 5 598 396 104 0 0 chr3RHet 1809735 1809802 -707705 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 598 3869 32 90 1 chr3RHet 1810172 1811017 -706490 - PROTOP_A DNA P 0 1105 186 5 598 4063 50 110 9 chr3RHet 1811021 1812232 -705275 + TC1_DM DNA Tc1 304 1666 0 5 598 2943 34 39 0 chr3RHet 1812237 1812621 -704886 - PROTOP DNA P -4081 399 1 5 598 32 75 0 0 chr3RHet 1812851 1812918 -704589 + AT_rich Low_complexity Low_complexity 1 67 0 5 598 370 116 123 28 chr3RHet 1813441 1813619 -703888 - DNAREP1_DM LINE Penelope -305 289 117 5 598 518 202 17 0 chr3RHet 1813641 1813760 -703747 - DNAREP1_DM LINE Penelope -459 135 15 5 598 21 0 0 0 chr3RHet 1814059 1814080 -703427 + AT_rich Low_complexity Low_complexity 1 21 0 5 598 501 152 87 8 chr3RHet 1814524 1814650 -702857 + DM297_LTR LTR Gypsy 279 414 0 5 598 3911 177 110 23 chr3RHet 1814686 1815694 -701813 + DM297_I LTR Gypsy 359 1454 -4713 5 598 3698 162 213 3 chr3RHet 1815702 1816690 -700817 + DM297_I LTR Gypsy 1982 3176 -2991 5 598 4811 22 2 0 chr3RHet 1816690 1817276 -700231 + PROTOP DNA P 1 587 -3893 5 598 22778 18 4 0 chr3RHet 1817285 1820093 -697414 + PROTOP DNA P 1662 4480 0 5 598 1664 134 92 3 chr3RHet 1820093 1820407 -697100 + DM297_I LTR Gypsy 3170 3511 -2656 5 598 1085 108 303 4 chr3RHet 1820455 1820727 -696780 + DNAREP1_DM LINE Penelope 242 594 0 5 598 43 71 0 0 chr3RHet 1821559 1821644 -695863 + AT_rich Low_complexity Low_complexity 1 85 0 5 598 364 42 0 0 chr3RHet 1822716 1822764 -694743 + TC1-2_DM DNA Tc1 588 635 -1009 5 598 1911 53 16 19 chr3RHet 1822771 1823079 -694428 + TC1-2_DM DNA Tc1 1338 1644 0 5 598 22 0 0 0 chr3RHet 1823621 1823643 -693864 + AT_rich Low_complexity Low_complexity 1 22 0 5 598 483 155 0 0 chr3RHet 1824560 1824644 -692863 - DNAREP1_DM LINE Penelope -22 572 489 5 598 1238 117 161 3 chr3RHet 1824971 1825262 -692245 - DNAREP1_DM LINE Penelope -82 512 176 5 598 840 150 204 40 chr3RHet 1825232 1825517 -691990 - DNAREP1_DM LINE Penelope -262 332 1 5 598 273 57 0 0 chr3RHet 1825545 1825580 -691927 + Baggins1 LINE LOA 2 36 -5417 5 598 5997 54 164 6 chr3RHet 1825584 1826460 -691047 + Baggins1 LINE LOA 139 1153 -4300 5 598 201 100 50 0 chr3RHet 1826859 1826899 -690608 + (CTA)n Simple_repeat Simple_repeat 3 44 0 5 598 3209 60 148 3 chr3RHet 1826900 1827775 -689732 + Baggins1 LINE LOA 1897 2898 -2555 5 598 811 346 68 23 chr3RHet 1827791 1828673 -688834 + Gypsy4_I LTR Gypsy 5075 5996 -292 5 598 3024 280 65 13 chr3RHet 1829824 1831128 -686379 + Gypsy4_I LTR Gypsy 1873 3244 -3044 5 598 603 251 57 0 chr3RHet 1831269 1831444 -686063 + Gypsy4_I LTR Gypsy 3835 4019 -2269 5 598 1121 277 21 24 chr3RHet 1831481 1831947 -685560 + Gypsy4_I LTR Gypsy 4280 4744 -1544 5 598 541 304 34 30 chr3RHet 1832090 1832519 -684988 + Gypsy4_I LTR Gypsy 5075 5394 -894 5 598 582 333 20 35 chr3RHet 1832625 1833082 -684425 + Gypsy10_I LTR Gypsy 4672 5062 -216 5 598 201 100 50 0 chr3RHet 1833682 1833722 -683785 + (CTA)n Simple_repeat Simple_repeat 3 44 0 5 74 12184 52 100 31 chr3RHet 1833723 1835653 -681854 + Baggins1 LINE LOA 1897 3961 -1492 5 599 1034 31 0 0 chr3RHet 1835680 1835807 -681700 - Baggins1 LINE LOA -6 5447 5321 5 599 1710 62 25 0 chr3RHet 1835805 1836045 -681462 - Baggins1 LINE LOA -2604 2849 2604 5 599 1190 136 149 17 chr3RHet 1836687 1837264 -680243 - DNAREP1_DM LINE Penelope 0 594 80 5 599 860 111 0 0 chr3RHet 1837268 1837403 -680104 - DNAREP1_DM LINE Penelope -459 135 1 5 599 617 116 0 0 chr3RHet 1837409 1837504 -680003 - DNAREP1_DM LINE Penelope 0 594 500 5 599 635 343 68 23 chr3RHet 1838565 1839128 -678379 + Gypsy_I LTR Gypsy 1081 1805 -5207 5 599 755 302 75 0 chr3RHet 1839529 1839866 -677641 + Gypsy_I LTR Gypsy 2460 2927 -3580 5 599 1377 335 52 29 chr3RHet 1839892 1840883 -676624 + Gypsy2_I LTR Gypsy 3073 4085 -2050 5 599 417 256 73 62 chr3RHet 1840887 1841079 -676428 + Gypsy4_I LTR Gypsy 4316 4509 -1779 5 599 3209 43 13 5 chr3RHet 1841083 1841531 -675976 - TC1-2_DM DNA Tc1 0 1644 1193 5 599 3959 58 5 5 chr3RHet 1841530 1842085 -675422 - TC1-2_DM DNA Tc1 -738 906 352 5 599 864 192 16 0 chr3RHet 1842094 1842281 -675226 - MDG1_I LTR Gypsy -4524 2072 1883 5 599 850 163 114 22 chr3RHet 1842288 1842680 -674827 + DNAREP1_DM LINE Penelope 7 332 -262 5 599 256 133 333 0 chr3RHet 1842683 1842758 -674749 + PENELOPE LINE Penelope 3946 4045 -116 5 599 516 101 0 0 chr3RHet 1842724 1842803 -674704 + DNAREP1_DM LINE Penelope 516 594 0 5 599 415 264 15 23 chr3RHet 1842866 1842998 -674509 + HMSBEAGLE_I LTR Gypsy 1638 1768 -4761 5 599 345 93 0 0 chr3RHet 1843818 1843872 -673635 + (TAA)n Simple_repeat Simple_repeat 3 56 0 5 599 1873 94 74 3 chr3RHet 1843877 1844175 -673332 + MDG1_LTR LTR Gypsy 94 412 -30 5 599 7267 76 31 13 chr3RHet 1844175 1845286 -672221 + MDG1_I LTR Gypsy 1 1132 -5464 5 599 7255 46 21 2 chr3RHet 1845358 1846347 -671160 + MDG1_I LTR Gypsy 1127 2134 -4462 5 599 880 38 0 8 chr3RHet 1846360 1846493 -671014 - DOC5_DM LINE Jockey -147 4535 4404 5 599 1867 46 63 3 chr3RHet 1846479 1846765 -670742 - DOC5_DM LINE Jockey -200 4482 4180 5 599 402 56 0 0 chr3RHet 1846760 1846814 -670693 - DOC5_DM LINE Jockey -703 3979 3926 5 599 351 105 0 0 chr3RHet 1846829 1846886 -670621 + (TAA)n Simple_repeat Simple_repeat 3 59 0 5 599 1882 91 74 3 chr3RHet 1846888 1847186 -670321 + MDG1_LTR LTR Gypsy 94 412 -30 5 599 38328 4 3 3 chr3RHet 1847887 1852396 -665111 - DOC LINE Jockey 0 4725 219 5 599 337 304 116 23 chr3RHet 1852838 1853010 -664497 + G2_DM LINE Jockey 1893 2080 -1022 5 599 581 94 0 0 chr3RHet 1853303 1853388 -664119 - PROTOP DNA P -1 4479 4393 5 599 380 214 13 23 chr3RHet 1853396 1853569 -663938 - PROTOP DNA P -190 4290 4121 5 599 25 65 0 0 chr3RHet 1853690 1853736 -663771 + AT_rich Low_complexity Low_complexity 1 46 0 5 599 1134 106 138 0 chr3RHet 1853767 1853984 -663523 + DNAREP1_DM LINE Penelope 2 248 -346 5 599 361 59 0 0 chr3RHet 1853987 1854038 -663469 + DNAREP1_DM LINE Penelope 529 579 -15 5 599 18786 43 75 18 chr3RHet 1854249 1856935 -660572 + G4_DM LINE Jockey 1 2839 -1017 5 599 6837 38 2 2 chr3RHet 1856935 1857816 -659691 + G4_DM LINE Jockey 2976 3856 0 5 599 2237 15 3 36 chr3RHet 1857878 1858193 -659314 - ROVER-LTR_DM LTR Gypsy 0 367 1 5 599 19613 9 2 21 chr3RHet 1858193 1860737 -656770 - ROVER-I_DM LTR Gypsy 0 6584 4090 5 599 3856 13 0 61 chr3RHet 1860758 1861265 -656242 - MICROPIA_LTR LTR Gypsy 0 476 1 5 599 4998 14 75 6 chr3RHet 1861265 1861916 -655591 - MICROPIA_I LTR Gypsy 0 4476 3781 5 599 3293 153 31 93 chr3RHet 1866569 1867461 -650046 + Gypsy12A_LTR LTR Gypsy 1444 2280 0 5 599 324 235 0 0 chr3RHet 1867746 1867831 -649676 - Ulysses_I LTR Gypsy -1599 4782 4698 5 599 233 295 10 10 chr3RHet 1867846 1867942 -649565 - Ulysses_I LTR Gypsy -1762 4619 4524 5 599 280 209 14 114 chr3RHet 1868911 1869133 -648374 + Gypsy8_I LTR Gypsy 4170 4347 0 5 599 627 173 170 98 chr3RHet 1869134 1869406 -648101 + Gypsy8_LTR LTR Gypsy 1 292 -12 5 599 293 200 13 0 chr3RHet 1869406 1869481 -648026 + Gypsy8_I LTR Gypsy 4 79 -4268 5 599 813 307 182 4 chr3RHet 1869985 1870535 -646972 - Ulysses_I LTR Gypsy -532 5849 5202 5 599 1773 199 24 28 chr3RHet 1870552 1871134 -646373 + Gypsy12A_LTR LTR Gypsy 1 550 -1786 5 599 4369 169 84 72 chr3RHet 1871163 1872575 -644932 + Gypsy12A_LTR LTR Gypsy 915 2336 0 5 599 324 235 0 0 chr3RHet 1872860 1872945 -644562 - Ulysses_I LTR Gypsy -1599 4782 4698 5 599 233 295 10 10 chr3RHet 1872960 1873056 -644451 - Ulysses_I LTR Gypsy -1762 4619 4524 5 599 290 204 14 114 chr3RHet 1874025 1874247 -643260 + Gypsy8_I LTR Gypsy 4170 4347 0 5 599 627 173 170 98 chr3RHet 1874248 1874520 -642987 + Gypsy8_LTR LTR Gypsy 1 292 -12 5 599 293 200 13 0 chr3RHet 1874520 1874595 -642912 + Gypsy8_I LTR Gypsy 4 79 -4268 5 599 700 306 182 4 chr3RHet 1875099 1875649 -641858 - Ulysses_I LTR Gypsy -532 5849 5202 5 599 1793 191 26 28 chr3RHet 1875666 1876247 -641260 + Gypsy12A_LTR LTR Gypsy 1 550 -1786 5 599 4553 165 102 78 chr3RHet 1876280 1877708 -639799 + Gypsy12A_LTR LTR Gypsy 819 2280 0 5 599 1031 311 125 33 chr3RHet 1877993 1878913 -638594 - Ulysses_I LTR Gypsy -1599 4782 3778 5 599 2349 76 6 0 chr3RHet 1879129 1879457 -638050 - STALKER4_LTR LTR Gypsy -28 374 45 5 599 9263 115 55 21 chr3RHet 1879471 1881439 -636068 - STALKER4_I LTR Gypsy -308 6589 4732 5 599 3866 95 16 33 chr3RHet 1881432 1882073 -635434 + CIRCE LINE Composite 3508 4137 -2219 5 599 6475 44 0 5 chr3RHet 1882117 1882965 -634542 + CIRCE LINE Composite 4137 4980 -1376 5 599 1403 61 10 0 chr3RHet 1883055 1883251 -634256 - Stalker2_I LTR Gypsy -2732 4670 4473 5 599 13586 98 28 10 chr3RHet 1883250 1885382 -632125 - STALKER4_I LTR Gypsy -2631 3899 1730 5 599 883 203 97 12 chr3RHet 1885386 1885715 -631792 - STALKER4_I LTR Gypsy -5377 1153 797 5 599 240 314 19 19 chr3RHet 1885867 1886029 -631478 - HMSBEAGLE_I LTR Gypsy -779 5750 5589 5 599 36 23 0 0 chr3RHet 1886312 1886355 -631152 + AT_rich Low_complexity Low_complexity 1 43 0 5 599 13615 42 10 3 chr3RHet 1886360 1888122 -629385 + DMCR1A LINE CR1 2 1775 -2695 5 599 14132 23 41 12 chr3RHet 1888168 1889918 -627589 - DMCR1A LINE CR1 0 4470 2671 5 599 696 324 84 31 chr3RHet 1889913 1890486 -627021 - HMSBEAGLE_I LTR Gypsy -2291 4238 3636 5 599 473 334 114 16 chr3RHet 1890499 1890937 -626570 - HMSBEAGLE_I LTR Gypsy -2946 3583 3103 5 599 24 0 0 0 chr3RHet 1891023 1891047 -626460 + AT_rich Low_complexity Low_complexity 1 24 0 5 599 302 301 9 9 chr3RHet 1891281 1891395 -626112 - HMSBEAGLE_I LTR Gypsy -3766 2763 2650 5 599 698 353 14 3 chr3RHet 1891955 1892313 -625194 - HMSBEAGLE_I LTR Gypsy -4456 2073 1712 5 599 267 307 0 0 chr3RHet 1892377 1892478 -625029 - HMSBEAGLE_I LTR Gypsy -4913 1616 1516 5 599 44 63 0 0 chr3RHet 1892892 1892971 -624536 + AT_rich Low_complexity Low_complexity 1 79 0 5 599 21 36 0 0 chr3RHet 1893297 1893325 -624182 + AT_rich Low_complexity Low_complexity 1 28 0 5 599 581 133 198 8 chr3RHet 1893420 1893541 -623966 + DNAREP1_DM LINE Penelope 449 592 -2 5 599 2149 116 208 6 chr3RHet 1893549 1894043 -623464 + DNAREP1_DM LINE Penelope 1 593 -1 5 599 4025 54 64 2 chr3RHet 1894093 1895014 -622493 + PROTOP_B DNA P 129 1153 0 5 599 693 85 600 22 chr3RHet 1895526 1895696 -621811 - DNAREP1_DM LINE Penelope -326 268 1 5 599 21 71 0 0 chr3RHet 1896781 1896823 -620684 + AT_rich Low_complexity Low_complexity 1 42 0 5 599 627 227 91 14 chr3RHet 1897169 1897379 -620128 + DNAREP1_DM LINE Penelope 4 229 -365 5 599 1361 131 186 0 chr3RHet 1897396 1897754 -619753 + DNAREP1_DM LINE Penelope 1 572 -22 5 599 289 174 141 65 chr3RHet 1898002 1898094 -619413 + DNAREP1_DM LINE Penelope 496 594 0 5 599 246 154 154 0 chr3RHet 1898319 1898371 -619136 - DNAREP1_DM LINE Penelope -525 69 10 5 599 324 246 208 14 chr3RHet 1898402 1898546 -618961 + PROTOP_A DNA P 1 172 -933 5 599 25 51 0 0 chr3RHet 1899632 1899671 -617836 + AT_rich Low_complexity Low_complexity 1 39 0 5 599 25 31 0 0 chr3RHet 1899901 1899933 -617574 + AT_rich Low_complexity Low_complexity 1 32 0 5 599 307 104 221 15 chr3RHet 1900044 1900112 -617395 + Invader6_I LTR Gypsy 866 947 -3152 5 599 586 139 10 0 chr3RHet 1900117 1900218 -617289 + DNAREP1_DM LINE Penelope 138 239 -355 5 599 485 254 196 19 chr3RHet 1900217 1900482 -617025 + NOMAD_I LTR Gypsy 6261 6572 0 5 599 403 33 250 0 chr3RHet 1901622 1901682 -615825 + PROTOP_B DNA P 1 75 -1078 5 599 5455 69 14 21 chr3RHet 1901680 1902608 -614899 + PROTOP_B DNA P 136 1063 -42 5 599 3090 32 35 0 chr3RHet 1902864 1903237 -614270 - ROOA_LTR LTR Pao 0 386 1 5 599 9587 49 97 24 chr3RHet 1903439 1904832 -612675 - ROOA_I LTR Pao -7 6842 5349 5 599 225 252 151 28 chr3RHet 1904942 1905048 -612459 - ROOA_I LTR Pao -1164 5685 5567 5 599 40079 42 30 19 chr3RHet 1905276 1910485 -607022 - ROOA_I LTR Pao -1503 5346 78 5 599 241 31 0 0 chr3RHet 1910483 1910515 -606992 - ROOA_LTR LTR Pao -354 32 1 5 599 21 57 0 0 chr3RHet 1910788 1910823 -606684 + AT_rich Low_complexity Low_complexity 1 35 0 5 599 51 65 0 0 chr3RHet 1911018 1911111 -606396 + AT_rich Low_complexity Low_complexity 1 93 0 5 599 31 26 0 0 chr3RHet 1912122 1912160 -605347 + AT_rich Low_complexity Low_complexity 1 38 0 5 599 906 108 18 0 chr3RHet 1912663 1912829 -604678 + TLD2 Unknown Unknown 50 218 0 5 599 262 318 20 14 chr3RHet 1912815 1912982 -604525 + ACCORD_I LTR Gypsy 3569 3722 -1824 5 599 946 154 167 9 chr3RHet 1913078 1913288 -604219 + FW_DM LINE Jockey 117 359 -4333 5 599 1028 68 7 0 chr3RHet 1913288 1913434 -604073 + ZAM_LTR LTR Gypsy 1 147 -325 5 599 8375 68 10 7 chr3RHet 1913455 1914579 -602928 + ZAM_I LTR Gypsy 1223 2349 -5141 5 599 5493 61 7 1 chr3RHet 1914570 1915307 -602200 + ZAM_I LTR Gypsy 2551 3291 -4199 5 599 15850 52 11 0 chr3RHet 1915310 1917302 -600205 + ZAM_I LTR Gypsy 3462 5476 -2014 5 599 9888 49 52 1 chr3RHet 1917306 1918607 -598900 + ZAM_I LTR Gypsy 6122 7488 -2 5 599 2355 163 42 22 chr3RHet 1918608 1919142 -598365 + ZAM_LTR LTR Gypsy 3 472 0 5 599 1630 182 97 12 chr3RHet 1919143 1919769 -597738 + FW_DM LINE Jockey 356 1034 -3658 5 599 2651 35 6 0 chr3RHet 1919767 1920084 -597423 - DOC3_DM LINE Jockey -629 4111 3793 5 599 24430 41 46 2 chr3RHet 1920093 1923282 -594225 - DOC3_DM LINE Jockey -1075 3665 261 5 599 30 0 0 0 chr3RHet 1923336 1923366 -594141 + AT_rich Low_complexity Low_complexity 1 30 0 5 599 2625 272 35 13 chr3RHet 1924361 1925199 -592308 - Copia2_I LTR Copia -97 4065 3210 5 599 370 353 0 0 chr3RHet 1925654 1925824 -591683 - Copia2_I LTR Copia -2146 2016 1847 5 599 858 304 93 61 chr3RHet 1925836 1926653 -590854 - Copia2_I LTR Copia -2487 1675 833 5 599 269 298 19 37 chr3RHet 1926796 1926904 -590603 - DM1731_I LTR Copia -3328 648 543 5 599 439 310 0 0 chr3RHet 1927156 1927301 -590206 - DIVER2_I LTR Pao -477 3670 3526 5 599 310 244 0 0 chr3RHet 1927410 1927492 -590015 - DIVER2_I LTR Pao -788 3359 3278 5 599 296 340 90 4 chr3RHet 1927598 1927843 -589664 - DIVER2_I LTR Pao -1025 3122 2857 5 599 304 336 16 0 chr3RHet 1928194 1928319 -589188 - DIVER2_I LTR Pao -1621 2526 2400 5 599 318 274 39 10 chr3RHet 1929077 1929180 -588327 - DIVER2_I LTR Pao -1790 2357 2252 5 599 511 326 14 94 chr3RHet 1929566 1929992 -587515 - DIVER2_I LTR Pao -2346 1801 1410 5 599 1331 154 86 12 chr3RHet 1929861 1930117 -587390 - G3_DM LINE Jockey -4026 579 305 5 599 363 69 138 0 chr3RHet 1930125 1930183 -587324 - G3_DM LINE Jockey -4458 147 82 5 599 425 89 59 15 chr3RHet 1931026 1931094 -586413 - G3_DM LINE Jockey -4534 71 1 5 599 27 81 0 0 chr3RHet 1932160 1932222 -585285 + AT_rich Low_complexity Low_complexity 1 62 0 5 599 2617 17 0 0 chr3RHet 1932478 1932773 -584734 - PROTOP_A DNA P 0 1105 811 5 599 180 0 0 0 chr3RHet 1932773 1932793 -584714 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 599 6379 32 21 1 chr3RHet 1933054 1933861 -583646 + PROTOP DNA P 1 823 -3657 5 599 5858 15 0 0 chr3RHet 1933856 1934535 -582972 + PROTOP DNA P 3802 4480 0 5 599 313 109 0 0 chr3RHet 1934556 1934602 -582905 + IDEFIX_LTR LTR Gypsy 1 46 -548 5 599 748 239 7 97 chr3RHet 1934704 1934973 -582534 + IDEFIX_LTR LTR Gypsy 296 540 -54 5 599 240 111 22 0 chr3RHet 1936003 1936048 -581459 + HOBO DNA hAT 2710 2755 -261 5 599 437 195 16 41 chr3RHet 1936086 1936209 -581298 + HOBO DNA hAT 2897 3016 0 5 599 236 211 88 0 chr3RHet 1936309 1936366 -581141 + DNAREP1_DM LINE Penelope 396 457 -137 5 599 1766 96 80 34 chr3RHet 1936371 1936682 -580825 - DNAREP1_DM LINE Penelope -146 448 136 5 599 341 255 59 0 chr3RHet 1937590 1937692 -579815 - DNAREP1_DM LINE Penelope -149 445 338 5 599 7068 46 79 20 chr3RHet 1937921 1939400 -578107 + TC1-2_DM DNA Tc1 1 1567 -77 5 599 486 233 56 36 chr3RHet 1940051 1940247 -577260 - Gypsy3_LTR LTR Gypsy -161 237 38 5 599 609 280 56 63 chr3RHet 1940571 1940949 -576558 - ROO_I LTR Pao -3153 5103 4729 5 599 26 30 0 0 chr3RHet 1941182 1941215 -576292 + AT_rich Low_complexity Low_complexity 1 33 0 5 599 319 253 105 57 chr3RHet 1941562 1941809 -575698 - ROO_I LTR Pao -4306 3950 3692 5 599 260 299 22 7 chr3RHet 1941838 1941976 -575531 - ROO_I LTR Pao -4650 3606 3467 5 599 748 266 201 0 chr3RHet 1942343 1942745 -574762 - ROO_I LTR Pao -6190 2066 1584 5 599 22 0 0 0 chr3RHet 1943441 1943463 -574044 + AT_rich Low_complexity Low_complexity 1 22 0 5 599 289 181 38 49 chr3RHet 1943635 1943722 -573785 - ROO_I LTR Pao -6769 80 1 5 599 737 274 106 3 chr3RHet 1944106 1944476 -573031 - Jockey2 LINE Jockey -1021 3999 3670 5 599 335 226 0 2 chr3RHet 1944474 1944556 -572951 - Jockey2 LINE Jockey -2527 2493 2426 5 599 1655 284 67 10 chr3RHet 1944598 1945198 -572309 - Jockey2 LINE Jockey -2401 1027 394 5 599 2500 76 21 0 chr3RHet 1945202 1945531 -571976 - Gypsy9_LTR LTR Gypsy 0 336 1 5 599 681 267 130 8 chr3RHet 1945533 1945786 -571721 - LINEJ1_DM LINE Jockey -3445 1575 1292 5 599 25433 49 82 20 chr3RHet 1945819 1949261 -568246 + DOC3_DM LINE Jockey 11 3665 -1075 5 599 8114 35 8 3 chr3RHet 1949259 1950219 -567288 + DOC3_DM LINE Jockey 3776 4740 0 5 599 367 306 34 7 chr3RHet 1950274 1950422 -567085 - LINEJ1_DM LINE Jockey -3792 1228 1077 5 599 251 308 18 27 chr3RHet 1950688 1950798 -566709 - Jockey2 LINE Jockey -3071 357 249 5 599 905 95 289 5 chr3RHet 1951173 1951363 -566144 + DMCR1A LINE CR1 504 747 -3723 5 599 1162 106 9 61 chr3RHet 1951815 1952080 -565427 + DNAREP1_DM LINE Penelope 5 383 -211 5 599 256 178 301 0 chr3RHet 1952076 1952149 -565358 + DM176_I LTR Gypsy 4530 4624 -1796 5 599 1595 135 4 93 chr3RHet 1952248 1952609 -564898 + Gypsy8_LTR LTR Gypsy 1 304 0 5 599 296 213 125 21 chr3RHet 1952583 1952727 -564780 + Gypsy8_I LTR Gypsy 1 159 -4188 5 599 894 119 0 54 chr3RHet 1952759 1952927 -564580 + Gypsy8_I LTR Gypsy 72 230 -4117 5 599 1094 101 252 0 chr3RHet 1953592 1953849 -563658 - DNAREP1_DM LINE Penelope 0 594 273 5 599 22 70 0 0 chr3RHet 1953941 1953984 -563523 + AT_rich Low_complexity Low_complexity 1 43 0 5 599 8099 124 20 8 chr3RHet 1954116 1955386 -562121 - FW_DM LINE Jockey -8 4684 3399 5 599 965 172 32 11 chr3RHet 1955391 1955579 -561928 - FW_DM LINE Jockey -2098 2594 2403 5 599 624 53 0 0 chr3RHet 1955577 1955652 -561855 - FW_DM LINE Jockey -2720 1972 1898 5 599 702 170 71 0 chr3RHet 1955718 1955859 -561648 - FW_DM LINE Jockey -3105 1587 1437 5 599 251 308 18 27 chr3RHet 1955938 1956048 -561459 - Jockey2 LINE Jockey -3071 357 249 5 599 905 95 289 5 chr3RHet 1956423 1956613 -560894 + DMCR1A LINE CR1 504 747 -3723 5 599 1188 100 9 61 chr3RHet 1957065 1957330 -560177 + DNAREP1_DM LINE Penelope 5 383 -211 5 599 279 164 301 0 chr3RHet 1957326 1957399 -560108 + DM176_I LTR Gypsy 4530 4624 -1796 5 599 1547 141 4 93 chr3RHet 1957498 1957859 -559648 + Gypsy8_LTR LTR Gypsy 1 304 0 5 599 296 213 125 21 chr3RHet 1957833 1957977 -559530 + Gypsy8_I LTR Gypsy 1 159 -4188 5 599 898 119 0 54 chr3RHet 1958009 1958177 -559330 + Gypsy8_I LTR Gypsy 72 230 -4117 5 599 515 97 0 0 chr3RHet 1958836 1958908 -558599 - DNAREP1_DM LINE Penelope 0 594 523 5 599 2118 170 124 0 chr3RHet 1958907 1959611 -557896 - FW_DM LINE Jockey -3250 1442 652 5 599 2005 163 45 58 chr3RHet 1959633 1960082 -557425 - FW_DM LINE Jockey -4131 561 119 5 599 1243 126 62 9 chr3RHet 1960220 1960444 -557063 + DNAREP1_DM LINE Penelope 32 267 -327 5 599 870 158 209 0 chr3RHet 1960432 1960647 -556860 - DNAREP1_DM LINE Penelope -174 420 161 5 599 501 160 64 71 chr3RHet 1960644 1960837 -556670 + PROTOP_B DNA P 868 1110 -43 5 599 237 230 19 57 chr3RHet 1962426 1962532 -554975 + T-rich Low_complexity Low_complexity 3 104 0 5 599 2732 127 65 27 chr3RHet 1963129 1963645 -553862 - DNAREP1_DM LINE Penelope 0 594 88 5 599 22 56 0 0 chr3RHet 1964169 1964205 -553302 + AT_rich Low_complexity Low_complexity 1 36 0 5 599 373 266 8 8 chr3RHet 1964786 1964915 -552592 + DNAREP1_DM LINE Penelope 118 246 -348 5 599 555 165 72 18 chr3RHet 1964915 1965026 -552481 + PROTOP_B DNA P 1037 1153 0 5 600 24 77 0 0 chr3RHet 1967906 1967958 -549549 + AT_rich Low_complexity Low_complexity 1 52 0 5 600 852 169 86 96 chr3RHet 1969019 1969333 -548174 - Gypsy_LTR LTR Gypsy -20 462 152 5 600 13303 168 15 0 chr3RHet 1969335 1971537 -545970 - Gypsy_I LTR Gypsy -119 6388 4153 5 600 9549 152 13 5 chr3RHet 1971530 1973087 -544420 - Gypsy_I LTR Gypsy -2559 3948 2344 5 600 2049 156 0 43 chr3RHet 1973091 1973440 -544067 - Gypsy_I LTR Gypsy -4404 2103 1770 5 600 4731 219 3 8 chr3RHet 1973441 1974357 -543150 - Gypsy_I LTR Gypsy -5051 1456 545 5 600 11600 57 13 0 chr3RHet 1974374 1975808 -541699 + BS2 LINE Jockey 3246 4698 -23 5 600 1181 200 16 8 chr3RHet 1975809 1976056 -541451 - DM176_I LTR Gypsy -3298 3122 2874 5 600 442 171 45 45 chr3RHet 1976087 1976197 -541310 - DM176_I LTR Gypsy -3891 2529 2420 5 600 400 149 45 0 chr3RHet 1976194 1976261 -541246 - DM176_I LTR Gypsy -3602 2818 2749 5 600 477 173 139 43 chr3RHet 1976256 1976371 -541136 - DM176_I LTR Gypsy -3820 2600 2475 5 600 795 85 0 0 chr3RHet 1977218 1977324 -540183 + DNAREP1_DM LINE Penelope 1 106 -488 5 600 499 231 8 0 chr3RHet 1977340 1977457 -540050 - TOM_I LTR Gypsy -571 5541 5424 5 600 752 237 11 0 chr3RHet 1977466 1977656 -539851 - TOM_I LTR Gypsy -1112 5000 4809 5 600 4936 45 138 12 chr3RHet 1978108 1979567 -537940 + TC1-2_DM DNA Tc1 1 1644 0 5 600 2398 323 57 34 chr3RHet 1980692 1982290 -535217 - BLASTOPIA_I LTR Gypsy 0 4481 2847 5 600 3184 17 0 0 chr3RHet 1982292 1982648 -534859 - MDG1_LTR LTR Gypsy 0 442 87 5 600 423 100 0 0 chr3RHet 1982648 1982718 -534789 + (TTA)n Simple_repeat Simple_repeat 3 72 0 5 600 56957 7 22 2 chr3RHet 1982722 1989203 -528304 - MDG1_I LTR Gypsy -98 6799 1 5 600 3184 17 0 0 chr3RHet 1989203 1989559 -527948 - MDG1_LTR LTR Gypsy 0 442 87 5 600 423 100 0 0 chr3RHet 1989559 1989629 -527878 + (TTA)n Simple_repeat Simple_repeat 3 72 0 5 600 431 340 48 18 chr3RHet 1989823 1990155 -527352 - BLASTOPIA_I LTR Gypsy -1886 2595 2254 5 600 2316 23 8 0 chr3RHet 1990511 1990775 -526732 + Invader2_LTR LTR Gypsy 1 266 0 5 600 39978 12 5 0 chr3RHet 1990775 1995344 -522163 + Invader2_I LTR Gypsy 1 4592 0 5 600 2261 34 8 0 chr3RHet 1995344 1995608 -521899 + Invader2_LTR LTR Gypsy 1 266 0 5 600 23259 27 11 0 chr3RHet 1995892 1998561 -518946 + G5_DM LINE Jockey 1638 4335 -521 5 600 871 267 101 4 chr3RHet 1999435 1999702 -517805 - TOM_I LTR Gypsy -1312 4800 4508 5 600 1169 239 51 3 chr3RHet 1999688 1999999 -517508 - DM297_I LTR Gypsy -1632 4535 4210 5 600 486 167 0 0 chr3RHet 2000000 2000084 -517423 - DM297_I LTR Gypsy -1959 4208 4125 5 600 3572 270 92 39 chr3RHet 2000091 2002272 -515235 - TOM_I LTR Gypsy -3807 2305 1 5 600 1740 46 0 5 chr3RHet 2002276 2002495 -515012 - DMTOM1_LTR LTR Gypsy -3 407 190 5 600 47 0 0 0 chr3RHet 2002511 2002558 -514949 + AT_rich Low_complexity Low_complexity 1 47 0 5 600 31 82 0 0 chr3RHet 2003126 2003199 -514308 + AT_rich Low_complexity Low_complexity 1 73 0 5 600 25 0 0 0 chr3RHet 2004407 2004432 -513075 + AT_rich Low_complexity Low_complexity 1 25 0 5 600 231 175 73 73 chr3RHet 2004798 2004866 -512641 - Gypsy4_I LTR Gypsy -1897 4391 4324 5 600 589 332 20 20 chr3RHet 2005609 2006027 -511480 - Gypsy4_I LTR Gypsy -2361 3499 3119 5 600 8856 39 6 4 chr3RHet 2006049 2007151 -510356 - PROTOP_A DNA P 0 1105 1 5 600 765 322 35 27 chr3RHet 2007215 2007357 -510150 - Gypsy4_I LTR Gypsy -3066 3518 3216 5 600 1520 33 24 0 chr3RHet 2007357 2007570 -509937 - TLD2 Unknown Unknown 0 218 1 5 600 765 322 35 27 chr3RHet 2007570 2008017 -509490 - Gypsy4_I LTR Gypsy -3066 3215 2255 5 600 474 355 20 35 chr3RHet 2008981 2009389 -508118 - Gypsy4_I LTR Gypsy -5228 1784 1332 5 600 3330 51 1 15 chr3RHet 2009647 2010087 -507420 + STALKER4_LTR LTR Gypsy 1 399 -3 5 600 28 48 0 0 chr3RHet 2010171 2010213 -507294 + AT_rich Low_complexity Low_complexity 1 42 0 5 600 16315 52 35 12 chr3RHet 2010220 2012596 -504911 + STALKER4_I LTR Gypsy 291 2768 -3762 5 600 25113 7 7 0 chr3RHet 2012594 2015484 -502023 + STALKER4_I LTR Gypsy 3622 6530 0 5 600 2596 17 0 0 chr3RHet 2015484 2015781 -501726 + STALKER4_LTR LTR Gypsy 1 297 -105 5 600 299 121 0 49 chr3RHet 2015804 2015865 -501642 + Stalker3_LTR LTR Gypsy 315 372 0 5 600 224 224 11 56 chr3RHet 2016286 2016376 -501131 + T-rich Low_complexity Low_complexity 3 88 0 5 600 47 0 0 0 chr3RHet 2016646 2016693 -500814 + AT_rich Low_complexity Low_complexity 1 47 0 5 600 626 73 285 32 chr3RHet 2017137 2017291 -500216 - DMTOM1_LTR LTR Gypsy -217 193 1 5 600 657 77 44 0 chr3RHet 2017293 2017384 -500123 + DNAREP1_DM LINE Penelope 500 594 0 5 600 858 115 279 6 chr3RHet 2017382 2017563 -499944 + DNAREP1_DM LINE Penelope 256 486 -108 5 600 3065 88 5 16 chr3RHet 2017563 2018003 -499504 + Mariner2_DM DNA Tc1 1 435 -477 5 600 2431 54 0 6 chr3RHet 2018095 2018410 -499097 + Mariner2_DM DNA Tc1 598 910 -2 5 600 445 83 41 14 chr3RHet 2018412 2018485 -499022 + DNAREP1_DM LINE Penelope 504 578 -16 5 600 1414 128 52 0 chr3RHet 2020085 2020335 -497172 + DNAREP1_DM LINE Penelope 1 263 -331 5 600 1381 103 14 0 chr3RHet 2020327 2020617 -496890 - DNAREP1_DM LINE Penelope -174 420 1 5 600 22 35 0 0 chr3RHet 2021922 2021951 -495556 + AT_rich Low_complexity Low_complexity 1 29 0 5 600 27 29 0 0 chr3RHet 2022050 2022084 -495423 + AT_rich Low_complexity Low_complexity 1 34 0 5 600 401 252 83 8 chr3RHet 2022532 2022652 -494855 + DIVER2_I LTR Pao 3847 3975 -172 5 600 270 145 141 26 chr3RHet 2022645 2022723 -494784 - DM297_LTR LTR Gypsy -38 376 290 5 600 321 296 0 0 chr3RHet 2022715 2022813 -494694 - Gypsy3_I LTR Gypsy -2648 3529 3432 5 600 318 257 0 0 chr3RHet 2022812 2022886 -494621 - Gypsy6_I LTR Gypsy -3201 3811 3738 5 600 952 309 106 41 chr3RHet 2022893 2023846 -493661 - Gypsy3_I LTR Gypsy -4006 2171 1157 5 600 277 288 153 109 chr3RHet 2023840 2024160 -493347 - Gypsy2_I LTR Gypsy -4800 1335 1002 5 600 27 29 0 0 chr3RHet 2024421 2024455 -493052 + AT_rich Low_complexity Low_complexity 1 34 0 5 600 24 32 0 0 chr3RHet 2024492 2024523 -492984 + AT_rich Low_complexity Low_complexity 1 31 0 5 600 2487 116 25 27 chr3RHet 2024607 2025015 -492492 - Gypsy6A_LTR LTR Gypsy -6 414 8 5 600 1072 149 283 3 chr3RHet 2025102 2025387 -492120 - DNAREP1_DM LINE Penelope -179 415 52 5 600 398 189 21 10 chr3RHet 2027436 2027532 -489975 - DNAREP1_DM LINE Penelope -263 331 235 5 600 674 158 38 44 chr3RHet 2027526 2027685 -489822 - DNAREP1_DM LINE Penelope -259 335 178 5 600 254 262 12 23 chr3RHet 2027672 2027758 -489749 + DIVER2_I LTR Pao 3098 3182 -965 5 600 569 66 13 0 chr3RHet 2027964 2028040 -489467 + DMCR1A LINE CR1 475 551 -3919 5 600 12234 68 21 5 chr3RHet 2028029 2029651 -487856 + DMCR1A LINE CR1 796 2443 -2027 5 600 3160 113 69 45 chr3RHet 2030003 2030623 -486884 + QUASIMODO_LTR LTR Gypsy 1 635 -23 5 600 22 0 0 0 chr3RHet 2030637 2030659 -486848 + AT_rich Low_complexity Low_complexity 1 22 0 5 600 206 174 22 0 chr3RHet 2030800 2030846 -486661 + (TTA)n Simple_repeat Simple_repeat 3 49 0 5 600 721 289 75 26 chr3RHet 2031178 2031565 -485942 + Gypsy5_I LTR Gypsy 2304 2709 -3800 5 600 6284 146 121 3 chr3RHet 2031815 2032987 -484520 - DMCR1A LINE CR1 -516 3954 2644 5 600 6184 45 43 6 chr3RHet 2033001 2033788 -483719 - BS3_DM LINE Jockey 0 1790 975 5 600 999 107 40 0 chr3RHet 2033788 2033935 -483572 - DMCR1A LINE CR1 -1879 2591 2439 5 600 1509 100 139 4 chr3RHet 2033935 2034187 -483320 - DNAREP1_DM LINE Penelope 0 594 309 5 600 1759 19 14 0 chr3RHet 2034179 2034386 -483121 - PROTOP_A DNA P -798 307 98 5 600 4604 6 0 2 chr3RHet 2034400 2034927 -482580 + PROTOP_A DNA P 580 1105 0 5 600 3590 35 2 0 chr3RHet 2034927 2035350 -482157 + DMCR1A LINE CR1 1336 1759 -2711 5 600 16412 40 26 17 chr3RHet 2035347 2037193 -480314 + DMCR1A LINE CR1 2363 4216 -254 5 600 188 0 74 0 chr3RHet 2037193 2037220 -480287 + (CCTAT)n Simple_repeat Simple_repeat 2 30 0 5 600 16412 40 26 17 chr3RHet 2037220 2037462 -480045 + DMCR1A LINE CR1 4217 4469 -1 5 600 985 136 98 0 chr3RHet 2037532 2037716 -479791 + Gypsy9_I LTR Gypsy 472 673 -4004 5 600 3820 179 67 35 chr3RHet 2037697 2038991 -478516 + Gypsy9_I LTR Gypsy 736 2036 -4252 5 600 30158 30 38 53 chr3RHet 2039189 2043255 -474252 - CIRCE LINE Composite -1376 4980 973 5 600 7325 48 31 27 chr3RHet 2043406 2044370 -473137 - CIRCE LINE Composite -5386 970 3 5 600 684 47 0 0 chr3RHet 2044371 2044456 -473051 - CIRCE LINE Composite 0 6356 6272 5 600 9149 45 2 33 chr3RHet 2044454 2045657 -471850 - CIRCE LINE Composite -211 6145 4981 5 600 11377 22 54 7 chr3RHet 2046014 2047414 -470093 - CIRCE LINE Composite -1376 4980 3515 5 600 1562 252 48 3 chr3RHet 2047411 2047883 -469624 + Gypsy9_I LTR Gypsy 2032 2717 -2561 5 600 3057 17 0 3 chr3RHet 2047905 2048262 -469245 - MDG1_LTR LTR Gypsy 0 442 87 5 600 423 100 0 0 chr3RHet 2048262 2048332 -469175 + (TTA)n Simple_repeat Simple_repeat 3 72 0 5 600 56735 19 8 4 chr3RHet 2048336 2048475 -469032 - MDG1_I LTR Gypsy 0 6596 6454 5 600 180 0 0 0 chr3RHet 2048475 2048495 -469012 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 600 56735 6 6 4 chr3RHet 2048495 2054951 -462556 - MDG1_I LTR Gypsy -143 6453 2 5 600 2318 25 0 4 chr3RHet 2054951 2055229 -462278 - MDG1_LTR LTR Gypsy 0 442 166 5 600 887 269 65 0 chr3RHet 2070308 2070587 -446920 + NOMAD_I LTR Gypsy 2920 3216 -3356 5 600 350 336 28 28 chr3RHet 2070574 2070859 -446648 + NOMAD_I LTR Gypsy 5288 5572 -1000 5 600 296 224 6 66 chr3RHet 2070931 2071098 -446409 + (CAAA)n Simple_repeat Simple_repeat 2 158 0 5 600 592 336 45 49 chr3RHet 2071795 2072283 -445224 + NOMAD_I LTR Gypsy 6077 6562 -10 5 600 555 298 162 18 chr3RHet 2073168 2073445 -444062 - NOMAD_I LTR Gypsy -208 6364 6048 5 600 1292 156 62 0 chr3RHet 2073929 2074153 -443354 - DNAREP1_DM LINE Penelope -26 568 331 5 600 233 155 41 27 chr3RHet 2074168 2074241 -443266 - DNAREP1_DM LINE Penelope -315 279 206 5 600 17326 44 22 25 chr3RHet 2074236 2076453 -441054 + DMCR1A LINE CR1 2106 4315 -155 5 600 42637 5 3 2 chr3RHet 2076453 2081143 -436364 - DOC LINE Jockey 0 4725 32 5 600 1043 82 95 0 chr3RHet 2081168 2081315 -436192 + DMCR1A LINE CR1 4310 4470 0 5 600 383 164 27 0 chr3RHet 2081318 2081391 -436116 - Invader6_I LTR Gypsy -3159 940 866 5 600 417 238 103 14 chr3RHet 2082431 2082576 -434931 + NOMAD_I LTR Gypsy 534 691 -5881 5 600 746 320 0 0 chr3RHet 2082986 2083230 -434277 + NOMAD_I LTR Gypsy 1376 1619 -4953 5 600 2208 319 30 20 chr3RHet 2083422 2084347 -433160 + NOMAD_I LTR Gypsy 4632 5565 -1007 5 600 221 235 32 48 chr3RHet 2084423 2084548 -432959 + A-rich Low_complexity Low_complexity 3 125 0 5 600 263 291 0 11 chr3RHet 2085026 2085113 -432394 + NOMAD_I LTR Gypsy 5941 6026 -546 5 600 1702 32 233 19 chr3RHet 2085614 2085858 -431649 + DMRT1A LINE R1 1 297 -4886 5 600 1017 16 179 11 chr3RHet 2085858 2086042 -431465 - ACCORD2_LTR LTR Gypsy 0 215 1 5 600 720 130 52 0 chr3RHet 2086042 2086155 -431352 - ACCORD2_I LTR Gypsy -11 7201 7083 5 600 499 180 10 124 chr3RHet 2086139 2086348 -431159 - ACCORD2_I LTR Gypsy -5521 1691 1507 5 600 11703 16 15 11 chr3RHet 2086409 2087770 -429737 - ACCORD2_I LTR Gypsy -5845 1367 1 5 600 1872 9 0 31 chr3RHet 2087770 2087992 -429515 - ACCORD2_LTR LTR Gypsy 0 215 1 5 600 6487 35 3 1 chr3RHet 2087992 2088766 -428741 + DMRT1A LINE R1 294 1068 -4115 5 600 13140 25 4 11 chr3RHet 2088768 2090297 -427210 + DMRT1A LINE R1 1311 2828 -2355 5 600 2372 29 0 0 chr3RHet 2090295 2090570 -426937 + DMRT1A LINE R1 2940 3214 -1969 5 600 5476 41 23 8 chr3RHet 2090567 2091230 -426277 + DMRT1A LINE R1 3429 4101 -1082 5 600 4097 35 8 0 chr3RHet 2091233 2091714 -425793 + DMRT1A LINE R1 4691 5175 -8 5 600 342 335 23 23 chr3RHet 2091727 2091944 -425563 + NOMAD_I LTR Gypsy 6259 6475 -97 5 600 310 324 42 33 chr3RHet 2093003 2093249 -424258 + QUASIMODO_I LTR Gypsy 379 615 -5348 5 600 766 285 48 56 chr3RHet 2093493 2093976 -423531 + QUASIMODO_I LTR Gypsy 1200 1678 -4382 5 600 1159 164 0 30 chr3RHet 2093985 2094202 -423305 + Gypsy8_LTR LTR Gypsy 1 210 -94 5 600 1312 139 0 37 chr3RHet 2094202 2094448 -423059 + Gypsy8_I LTR Gypsy 1 237 -4110 5 600 819 291 45 33 chr3RHet 2095062 2095421 -422086 + Gypsy8_I LTR Gypsy 413 775 -5878 5 600 4554 70 89 20 chr3RHet 2095497 2096206 -421301 + Gypsy8_I LTR Gypsy 230 987 -3360 5 600 1791 303 13 3 chr3RHet 2096182 2096797 -420710 + Gypsy8_I LTR Gypsy 1983 2603 -4050 5 9 6604 176 80 103 chr3RHet 2096815 2099270 -418237 + Gypsy8_I LTR Gypsy 1035 3388 -3265 5 601 351 250 0 0 chr3RHet 2099299 2099447 -418060 + (CCG)n Simple_repeat Simple_repeat 1 148 0 5 601 248 264 11 11 chr3RHet 2099463 2099551 -417956 + (CCG)n Simple_repeat Simple_repeat 2 89 0 5 601 425 121 0 168 chr3RHet 2099793 2099912 -417595 + Gypsy8_I LTR Gypsy 3321 3419 -928 5 601 679 97 263 70 chr3RHet 2100034 2100190 -417317 + Gypsy8_I LTR Gypsy 3407 3592 -755 5 601 3891 68 3 100 chr3RHet 2100197 2100836 -416671 + Gypsy8_I LTR Gypsy 3771 4347 0 5 601 1711 112 1 28 chr3RHet 2100837 2101217 -416290 + Gypsy8_LTR LTR Gypsy 1 296 -8 5 601 1122 110 129 5 chr3RHet 2101215 2101416 -416091 + Gypsy8_I LTR Gypsy 11 236 -4111 5 601 715 231 57 49 chr3RHet 2102406 2102652 -414855 + IDEFIX_I LTR Gypsy 1432 1679 -3949 5 601 238 107 18 18 chr3RHet 2102661 2102718 -414789 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 601 1587 286 24 16 chr3RHet 2102718 2103462 -414045 + QUASIMODO_I LTR Gypsy 5311 6060 0 5 601 1656 226 3 3 chr3RHet 2103637 2103975 -413532 - TV1I LTR Gypsy -3533 2430 2093 5 601 765 240 42 34 chr3RHet 2103991 2104254 -413253 - IDEFIX_I LTR Gypsy -3932 1696 1432 5 601 284 294 42 47 chr3RHet 2104376 2104569 -412938 - QUASIMODO_I LTR Gypsy -4472 1588 1397 5 601 299 322 46 37 chr3RHet 2104953 2105199 -412308 - QUASIMODO_I LTR Gypsy -5348 615 379 5 601 193 75 24 24 chr3RHet 2106090 2106131 -411376 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 601 896 202 62 114 chr3RHet 2106131 2106517 -410990 + ROVER-LTR_DM LTR Gypsy 2 367 0 5 601 4587 242 84 74 chr3RHet 2106517 2108871 -408636 + ROVER-I_DM LTR Gypsy 1 2642 -3942 5 601 847 179 0 0 chr3RHet 2108874 2109019 -408488 + ROVER-I_DM LTR Gypsy 3045 3189 -3395 5 601 1594 26 198 0 chr3RHet 2109021 2109243 -408264 - Invader2_LTR LTR Gypsy 0 266 1 5 601 982 16 24 0 chr3RHet 2109243 2109368 -408139 - Invader2_I LTR Gypsy 0 4592 4465 5 601 28773 11 3 0 chr3RHet 2109370 2113675 -403832 - Invader2_I LTR Gypsy -268 4324 1 5 601 2259 23 8 0 chr3RHet 2113675 2113939 -403568 - Invader2_LTR LTR Gypsy 0 266 1 5 601 11538 203 9 6 chr3RHet 2113944 2117394 -400113 + ROVER-I_DM LTR Gypsy 2916 6584 0 5 601 799 208 111 92 chr3RHet 2117394 2117754 -399753 + ROVER-LTR_DM LTR Gypsy 1 367 0 5 601 676 169 14 0 chr3RHet 2118070 2118212 -399295 - DM412 LTR Gypsy -846 6051 5908 5 601 12918 42 28 1 chr3RHet 2118209 2119826 -397681 - DMCR1A LINE CR1 0 4470 2811 5 601 444 248 120 16 chr3RHet 2119828 2120040 -397467 - DM412 LTR Gypsy -986 5911 5675 5 601 487 17 0 0 chr3RHet 2120040 2120098 -397409 + Gypsy11_LTR LTR Gypsy 1 58 -394 5 601 3675 34 0 5 chr3RHet 2120098 2120541 -396966 + Gypsy11_LTR LTR Gypsy 2 442 -10 5 601 1217 34 0 0 chr3RHet 2120551 2120699 -396808 + Gypsy11_I LTR Gypsy 1 148 -3376 5 601 9233 22 42 0 chr3RHet 2120699 2120954 -396553 + Gypsy11_I LTR Gypsy 258 522 -3002 5 601 216 135 0 0 chr3RHet 2120954 2120991 -396516 + (CAG)n Simple_repeat Simple_repeat 1 37 0 5 601 9233 22 42 0 chr3RHet 2120991 2121893 -395614 + Gypsy11_I LTR Gypsy 523 1462 -2062 5 601 635 38 0 0 chr3RHet 2121897 2121977 -395530 + Baggins1 LINE LOA 4354 4433 -1020 5 601 5909 43 60 0 chr3RHet 2121981 2122727 -394780 + Baggins1 LINE LOA 4663 5453 0 5 601 17100 6 22 0 chr3RHet 2122731 2124496 -393011 + Gypsy11_I LTR Gypsy 1455 3254 -270 5 601 306 0 0 0 chr3RHet 2124496 2124530 -392977 + (TAG)n Simple_repeat Simple_repeat 2 35 0 5 601 17100 6 22 0 chr3RHet 2124530 2124789 -392718 + Gypsy11_I LTR Gypsy 3255 3523 -1 5 601 3195 50 60 0 chr3RHet 2124789 2125206 -392301 + Gypsy11_LTR LTR Gypsy 1 442 -10 5 601 23 68 0 0 chr3RHet 2125208 2125252 -392255 + AT_rich Low_complexity Low_complexity 1 44 0 5 601 863 182 22 0 chr3RHet 2125268 2125449 -392058 - TABOR_I LTR Gypsy -1463 4873 4689 5 601 288 95 0 0 chr3RHet 2125659 2125701 -391806 - DNAREP1_DM LINE Penelope 0 594 553 5 601 247 0 0 0 chr3RHet 2126992 2127019 -390488 + DNAREP1_DM LINE Penelope 567 593 -1 5 601 21 36 0 0 chr3RHet 2127589 2127617 -389890 + AT_rich Low_complexity Low_complexity 1 28 0 5 601 775 129 214 36 chr3RHet 2128508 2128706 -388801 - DNAREP1_DM LINE Penelope -25 569 380 5 601 615 174 0 0 chr3RHet 2128708 2128817 -388690 + PROTOP DNA P 78 186 -4294 5 601 39 0 0 0 chr3RHet 2128833 2128872 -388635 + AT_rich Low_complexity Low_complexity 1 39 0 5 601 31 82 0 0 chr3RHet 2129364 2129437 -388070 + AT_rich Low_complexity Low_complexity 1 73 0 5 601 25 0 0 0 chr3RHet 2130642 2130667 -386840 + AT_rich Low_complexity Low_complexity 1 25 0 5 601 1153 337 46 41 chr3RHet 2131395 2132033 -385474 - Gypsy4_I LTR Gypsy -2298 3562 2798 5 601 1531 28 24 0 chr3RHet 2132033 2132246 -385261 - TLD2 Unknown Unknown 0 218 1 5 601 1153 337 46 41 chr3RHet 2132246 2132697 -384810 - Gypsy4_I LTR Gypsy -2298 2797 2255 5 601 22 35 0 0 chr3RHet 2133301 2133330 -384177 + AT_rich Low_complexity Low_complexity 1 29 0 5 601 340 336 30 52 chr3RHet 2133587 2133857 -383650 - Gypsy6_I LTR Gypsy -5228 1784 1521 5 601 217 214 59 12 chr3RHet 2134407 2134492 -383015 + T-rich Low_complexity Low_complexity 2 90 0 5 601 36 0 0 0 chr3RHet 2134758 2134794 -382713 + AT_rich Low_complexity Low_complexity 1 36 0 5 601 1763 107 204 0 chr3RHet 2135630 2135958 -381549 + Gypsy12A_LTR LTR Gypsy 1 395 -1885 5 601 825 65 224 5 chr3RHet 2136043 2136257 -381250 + Gypsy12A_LTR LTR Gypsy 2013 2273 -7 5 601 903 27 0 0 chr3RHet 2136617 2136727 -380780 + (TC)n Simple_repeat Simple_repeat 2 111 0 5 601 336 286 34 0 chr3RHet 2137201 2137320 -380187 + DIVER2_I LTR Pao 4021 4143 -4 5 601 21 0 0 0 chr3RHet 2137504 2137525 -379982 + AT_rich Low_complexity Low_complexity 1 21 0 5 601 22397 36 47 13 chr3RHet 2137588 2140535 -376972 + DMCR1A LINE CR1 4 3050 -1420 5 601 4824 110 180 6 chr3RHet 2140544 2141789 -375718 - DOC LINE Jockey -1554 3171 1710 5 601 3544 138 128 62 chr3RHet 2141968 2142116 -375391 + Gypsy12A_LTR LTR Gypsy 719 882 -1398 5 601 286 0 67 22 chr3RHet 2142116 2142161 -375346 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 5 601 3544 138 128 62 chr3RHet 2142161 2142978 -374529 + Gypsy12A_LTR LTR Gypsy 883 1748 -532 5 601 1587 35 5 0 chr3RHet 2142939 2143138 -374369 - DOC3_DM LINE Jockey -1 4739 4540 5 601 14703 37 56 1 chr3RHet 2143136 2144966 -372541 - DOC3_DM LINE Jockey -2043 2697 767 5 601 3668 103 140 5 chr3RHet 2145018 2145993 -371514 - DOC LINE Jockey -1909 2816 1710 5 601 3554 139 129 60 chr3RHet 2146172 2146320 -371187 + Gypsy12A_LTR LTR Gypsy 719 882 -1398 5 601 286 0 67 22 chr3RHet 2146320 2146365 -371142 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 5 601 3554 139 129 60 chr3RHet 2146365 2147180 -370327 + Gypsy12A_LTR LTR Gypsy 883 1748 -532 5 601 1587 35 5 0 chr3RHet 2147141 2147340 -370167 - DOC3_DM LINE Jockey -1 4739 4540 5 601 14703 37 56 1 chr3RHet 2147338 2149168 -368339 - DOC3_DM LINE Jockey -2043 2697 767 5 601 2063 62 14 0 chr3RHet 2149164 2149435 -368072 - DOC3_DM LINE Jockey -4146 594 320 5 601 2410 121 96 45 chr3RHet 2149435 2149884 -367623 - ZAM_LTR LTR Gypsy 0 472 1 5 601 2306 72 0 28 chr3RHet 2149884 2150210 -367297 - DOC3_DM LINE Jockey -4423 317 1 5 601 2858 130 50 54 chr3RHet 2150220 2150796 -366711 + Gypsy12A_LTR LTR Gypsy 1707 2280 0 5 601 42 20 0 0 chr3RHet 2150834 2150883 -366624 + AT_rich Low_complexity Low_complexity 1 49 0 5 601 1509 111 72 79 chr3RHet 2150883 2151187 -366320 - DNAREP1_DM LINE Penelope -37 557 256 5 601 269 164 18 0 chr3RHet 2151185 2151240 -366267 - I_DM LINE I -3570 2661 2606 5 601 2143 15 18 14 chr3RHet 2151268 2151545 -365962 + DMCR1A LINE CR1 4 281 -4189 5 601 47 0 0 0 chr3RHet 2151553 2151600 -365907 + AT_rich Low_complexity Low_complexity 1 47 0 5 601 18786 36 21 1 chr3RHet 2152092 2154363 -363144 + DMCR1A LINE CR1 270 2586 -1884 5 601 6019 35 162 5 chr3RHet 2154344 2155177 -362330 + DMCR1A LINE CR1 2917 3880 -590 5 601 2987 193 98 2 chr3RHet 2155180 2155939 -361568 - Gypsy12_I LTR Gypsy -1117 4429 3526 5 601 973 180 168 9 chr3RHet 2155966 2156180 -361327 - Gypsy12_I LTR Gypsy -2283 3263 3016 5 601 559 241 68 0 chr3RHet 2156197 2156330 -361177 - Gypsy12_I LTR Gypsy -2604 2942 2801 5 601 994 267 81 6 chr3RHet 2156360 2156695 -360812 - Gypsy12_I LTR Gypsy -2931 2615 2256 5 601 904 197 5 56 chr3RHet 2156723 2156938 -360569 - Gypsy12_I LTR Gypsy -3401 2145 1942 5 601 2943 224 48 7 chr3RHet 2156960 2157653 -359854 - Gypsy12_I LTR Gypsy -4043 1503 783 5 601 592 48 167 0 chr3RHet 2157650 2157734 -359773 + DNAREP1_DM LINE Penelope 460 557 -37 5 601 274 190 49 25 chr3RHet 2157737 2157818 -359689 + DMCR1A LINE CR1 1199 1281 -3189 5 601 2125 110 81 0 chr3RHet 2157818 2158153 -359354 - Gypsy12A_LTR LTR Gypsy 0 2280 1919 5 601 23 78 0 0 chr3RHet 2158153 2158204 -359303 + AT_rich Low_complexity Low_complexity 1 51 0 5 601 658 234 152 40 chr3RHet 2159012 2159288 -358219 - DNAREP1_DM LINE Penelope -106 488 182 5 601 590 163 27 140 chr3RHet 2159351 2159666 -357841 + DNAREP1_DM LINE Penelope 121 328 -266 5 601 252 0 0 0 chr3RHet 2159748 2159776 -357731 + (TTA)n Simple_repeat Simple_repeat 2 29 0 5 601 332 141 202 13 chr3RHet 2159776 2159855 -357652 + DNAREP1_DM LINE Penelope 213 306 -288 5 601 34 24 0 0 chr3RHet 2159911 2159952 -357555 + AT_rich Low_complexity Low_complexity 1 41 0 5 601 368 0 0 0 chr3RHet 2161073 2161115 -356392 + PROTOP_B DNA P 1 42 -1111 5 601 3665 41 43 4 chr3RHet 2161115 2161870 -355637 + PROTOP DNA P 3650 4102 -378 5 601 1659 164 78 7 chr3RHet 2161976 2162282 -355225 + DMRT1B LINE R1 709 1036 -4147 5 601 429 123 0 0 chr3RHet 2162273 2162338 -355169 + DMRT1B LINE R1 1373 1437 -3746 5 601 750 23 0 0 chr3RHet 2162336 2162423 -355084 + IVK_DM LINE I 5277 5363 -39 5 601 263 330 24 89 chr3RHet 2162525 2162771 -354736 + ACCORD2_I LTR Gypsy 526 755 -6457 5 601 5890 3 0 0 chr3RHet 2162806 2163464 -354043 - QUASIMODO_LTR LTR Gypsy 0 658 1 5 601 51 31 0 0 chr3RHet 2163464 2163529 -353978 + AT_rich Low_complexity Low_complexity 1 65 0 5 601 360 91 0 0 chr3RHet 2163849 2163904 -353603 + PROTOP_B DNA P 219 273 -880 5 601 732 149 337 11 chr3RHet 2163976 2164160 -353347 + ROO_I LTR Pao 5242 5485 -2771 5 601 572 194 97 0 chr3RHet 2164150 2164305 -353202 + ROO_I LTR Pao 6612 6781 -1475 5 601 399 174 52 60 chr3RHet 2164497 2164613 -352894 - Copia_I LTR Copia -74 4519 4405 5 601 1083 248 93 41 chr3RHet 2164659 2165143 -352364 - Copia_I LTR Copia -266 4327 3819 5 601 480 263 78 35 chr3RHet 2165154 2165386 -352121 - Copia_I LTR Copia -866 3727 3486 5 601 1048 81 148 5 chr3RHet 2165452 2165675 -351832 - TRANSIB3 DNA Transib -3 2880 2626 5 601 564 15 0 0 chr3RHet 2165689 2165757 -351750 - TRANSIB3 DNA Transib -424 2459 2392 5 601 2806 36 137 16 chr3RHet 2165766 2166226 -351281 - TRANSIB3 DNA Transib -1577 1306 791 5 601 22994 6 41 7 chr3RHet 2166223 2169074 -348433 - QUASIMODO_I LTR Gypsy -3113 2947 1 5 601 5580 5 3 0 chr3RHet 2169074 2169730 -347777 - QUASIMODO_LTR LTR Gypsy 0 658 1 5 601 203 164 32 16 chr3RHet 2169730 2169792 -347715 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 601 345 91 0 0 chr3RHet 2170113 2170168 -347339 + PROTOP_B DNA P 219 273 -880 5 601 692 149 337 11 chr3RHet 2170240 2170424 -347083 + ROO_I LTR Pao 5242 5485 -2771 5 601 523 194 97 0 chr3RHet 2170414 2170569 -346938 + ROO_I LTR Pao 6612 6781 -1475 5 601 361 184 57 19 chr3RHet 2170772 2170877 -346630 - Copia_I LTR Copia -80 4513 4405 5 601 1002 252 91 39 chr3RHet 2170923 2171407 -346100 - Copia_I LTR Copia -266 4327 3819 5 601 410 268 78 35 chr3RHet 2171418 2171650 -345857 - Copia_I LTR Copia -866 3727 3486 5 601 1005 76 143 5 chr3RHet 2171716 2171940 -345567 - TRANSIB3 DNA Transib -3 2880 2626 5 601 522 29 0 0 chr3RHet 2171954 2172022 -345485 - TRANSIB3 DNA Transib -424 2459 2392 5 601 5412 37 105 10 chr3RHet 2172031 2172862 -344645 - TRANSIB3 DNA Transib -1577 1306 397 5 601 5198 120 97 2 chr3RHet 2173070 2174174 -343333 + DMRT1B LINE R1 2 1210 -3973 5 601 4924 3 0 0 chr3RHet 2174171 2174747 -342760 - QUASIMODO_LTR LTR Gypsy -82 576 1 5 601 51 31 0 0 chr3RHet 2174747 2174812 -342695 + AT_rich Low_complexity Low_complexity 1 65 0 5 601 345 91 0 0 chr3RHet 2175132 2175187 -342320 + PROTOP_B DNA P 219 273 -880 5 601 692 149 337 11 chr3RHet 2175259 2175443 -342064 + ROO_I LTR Pao 5242 5485 -2771 5 601 523 194 97 0 chr3RHet 2175433 2175588 -341919 + ROO_I LTR Pao 6612 6781 -1475 5 601 1142 248 131 36 chr3RHet 2175791 2176426 -341081 - Copia_I LTR Copia -80 4513 3819 5 601 410 268 78 35 chr3RHet 2176437 2176669 -340838 - Copia_I LTR Copia -866 3727 3486 5 601 999 81 143 5 chr3RHet 2176735 2176959 -340548 - TRANSIB3 DNA Transib -3 2880 2626 5 601 522 29 0 0 chr3RHet 2176973 2177041 -340466 - TRANSIB3 DNA Transib -424 2459 2392 5 601 5398 38 105 12 chr3RHet 2177050 2177883 -339624 - TRANSIB3 DNA Transib -1577 1306 397 5 601 9725 132 53 1 chr3RHet 2178091 2180590 -336917 + DMRT1B LINE R1 2 2631 -2552 5 601 1172 103 6 0 chr3RHet 2180572 2180746 -336761 + DMRT1B LINE R1 3602 3776 -1407 5 601 1235 132 159 0 chr3RHet 2180745 2180972 -336535 + DMRT1B LINE R1 3966 4228 -955 5 601 2802 110 139 6 chr3RHet 2180986 2181482 -336025 + DMRT1B LINE R1 4621 5182 -1 5 601 2098 73 0 0 chr3RHet 2181489 2181789 -335718 - TRANSIB3 DNA Transib -2475 408 109 5 601 411 240 48 48 chr3RHet 2181798 2182004 -335503 - Copia_I LTR Copia -1589 3004 2799 5 601 6260 172 47 64 chr3RHet 2182119 2183779 -333728 - Gypsy12_LTR LTR Gypsy 0 2336 705 5 601 1984 174 7 19 chr3RHet 2183781 2184196 -333311 - Gypsy12_LTR LTR Gypsy -1926 410 1 5 601 334 280 17 17 chr3RHet 2184365 2184528 -332979 - Copia_I LTR Copia -2315 2278 2116 5 601 6500 72 61 62 chr3RHet 2184528 2185683 -331824 + PROTOP_B DNA P 1 1153 0 5 601 424 0 0 0 chr3RHet 2185683 2185732 -331775 + PROTOP_B DNA P 1105 1153 0 5 601 280 291 51 82 chr3RHet 2185937 2186229 -331278 - Copia_I LTR Copia -3131 1462 1180 5 601 634 293 86 42 chr3RHet 2186634 2187207 -330300 - Copia_I LTR Copia -3845 748 151 5 601 238 88 0 0 chr3RHet 2187460 2187494 -330013 - Invader1_LTR LTR Gypsy -2 421 388 5 601 1237 147 33 41 chr3RHet 2187494 2187764 -329743 - Invader1_LTR LTR Gypsy -155 268 1 5 601 450 0 0 0 chr3RHet 2187821 2187876 -329631 - S2_DM DNA Tc1 0 1735 1681 5 601 3060 42 40 0 chr3RHet 2187896 2188300 -329207 - Gypsy6A_LTR LTR Gypsy 0 420 1 5 601 2610 307 62 13 chr3RHet 2188302 2189659 -327848 - Gypsy6_I LTR Gypsy 0 7012 4754 5 601 1343 272 37 5 chr3RHet 2189651 2190053 -327454 - Gypsy6_I LTR Gypsy -1777 5235 4821 5 601 266 188 0 0 chr3RHet 2190064 2190122 -327385 - Gypsy6_I LTR Gypsy -2289 4723 4678 5 601 3586 39 207 13 chr3RHet 2190129 2190815 -326692 + DMCR1A LINE CR1 1 819 -3651 5 601 7464 36 82 0 chr3RHet 2190823 2192234 -325273 + DMCR1A LINE CR1 1060 2586 -1884 5 601 5419 29 19 4 chr3RHet 2192215 2192899 -324608 + DMCR1A LINE CR1 2917 3610 -860 5 601 8510 29 16 3 chr3RHet 2192899 2193990 -323517 - PROTOP_A DNA P 0 1105 1 5 601 6709 27 27 2 chr3RHet 2193990 2194836 -322671 + DMCR1A LINE CR1 3604 4470 0 5 601 992 214 32 0 chr3RHet 2194846 2195066 -322441 - Gypsy6_I LTR Gypsy -2334 4678 4452 5 601 1772 251 84 10 chr3RHet 2195067 2195589 -321918 - Gypsy6_I LTR Gypsy -2703 4309 3749 5 601 4896 291 38 18 chr3RHet 2195591 2197400 -320107 - Gypsy6_I LTR Gypsy -3515 3497 1653 5 601 371 302 116 65 chr3RHet 2197439 2197733 -319774 - Gypsy2_I LTR Gypsy -4840 1295 987 5 601 22 94 0 0 chr3RHet 2197890 2197954 -319553 + AT_rich Low_complexity Low_complexity 1 64 0 5 601 3032 54 29 2 chr3RHet 2198163 2198572 -318935 - Gypsy6A_LTR LTR Gypsy 0 420 1 5 601 35 24 0 0 chr3RHet 2199092 2199134 -318373 + AT_rich Low_complexity Low_complexity 1 42 0 5 601 1210 244 60 38 chr3RHet 2199220 2199718 -317789 - Copia_I LTR Copia -266 4327 3819 5 601 277 265 93 26 chr3RHet 2199729 2199880 -317627 - Copia_I LTR Copia -866 3727 3567 5 601 32 0 0 0 chr3RHet 2199897 2199929 -317578 + AT_rich Low_complexity Low_complexity 1 32 0 5 601 1057 79 100 5 chr3RHet 2199974 2200164 -317343 - TRANSIB3 DNA Transib -171 2712 2505 5 601 2448 47 110 27 chr3RHet 2200231 2200596 -316911 + Mariner2_DM DNA Tc1 5 399 -513 5 601 1555 246 58 0 chr3RHet 2201427 2201878 -315629 + MAX_I LTR Pao 1490 1966 -5948 5 601 1628 240 104 64 chr3RHet 2201879 2202735 -314772 + MAX_I LTR Pao 2249 3138 -4776 5 601 4341 169 54 46 chr3RHet 2202741 2203726 -313781 + MAX_I LTR Pao 3447 4439 -3475 5 601 838 159 99 0 chr3RHet 2203717 2203899 -313608 + MAX_I LTR Pao 5093 5292 -2622 5 601 882 157 346 32 chr3RHet 2204128 2204397 -313110 - DNAREP1_DM LINE Penelope -72 522 170 5 601 22 80 0 0 chr3RHet 2204739 2204789 -312718 + AT_rich Low_complexity Low_complexity 1 50 0 5 601 23 33 0 0 chr3RHet 2204948 2204978 -312529 + AT_rich Low_complexity Low_complexity 1 30 0 5 601 22 0 0 0 chr3RHet 2205531 2205553 -311954 + AT_rich Low_complexity Low_complexity 1 22 0 5 601 661 76 78 78 chr3RHet 2206360 2206488 -311019 - DNAREP1_DM LINE Penelope 0 594 467 5 601 718 174 161 40 chr3RHet 2206503 2206862 -310645 - DNAREP1_DM LINE Penelope -266 328 1 5 601 353 90 209 0 chr3RHet 2207004 2207071 -310436 + DNAREP1_DM LINE Penelope 467 547 -47 5 601 480 156 78 47 chr3RHet 2207135 2207263 -310244 - Gypsy6A_LTR LTR Gypsy -41 379 248 5 601 34 24 0 0 chr3RHet 2207711 2207752 -309755 + AT_rich Low_complexity Low_complexity 1 41 0 5 601 2506 279 48 33 chr3RHet 2207838 2209154 -308353 - Copia_I LTR Copia -266 4327 2992 5 601 1147 273 56 47 chr3RHet 2209383 2210083 -307424 - Copia_I LTR Copia -2298 2295 1590 5 601 27 0 0 0 chr3RHet 2210098 2210125 -307382 + AT_rich Low_complexity Low_complexity 1 27 0 5 601 4456 84 8 28 chr3RHet 2215258 2215970 -301537 - CIRCE LINE Composite -1376 4980 4283 5 601 6976 65 55 26 chr3RHet 2215971 2217020 -300487 - CIRCE LINE Composite -2316 4040 2961 5 601 874 41 0 89 chr3RHet 2217022 2217157 -300350 - CIRCE LINE Composite -3521 2835 2713 5 601 7923 60 27 122 chr3RHet 2217156 2218572 -298935 - CIRCE LINE Composite -4102 2254 973 5 601 6576 62 47 28 chr3RHet 2218699 2219651 -297856 - CIRCE LINE Composite -5386 970 1 5 601 18790 90 77 82 chr3RHet 2219678 2225158 -292349 - CIRCE LINE Composite -79 6277 973 5 601 6831 60 30 28 chr3RHet 2225300 2226268 -291239 - CIRCE LINE Composite -5386 970 1 5 601 6601 35 28 0 chr3RHet 2226295 2227122 -290385 - CIRCE LINE Composite -79 6277 5428 5 601 2508 81 67 35 chr3RHet 2227202 2227635 -289872 - CIRCE LINE Composite -929 5427 4981 5 75 4489 83 7 23 chr3RHet 2227989 2228692 -288815 - CIRCE LINE Composite -1376 4980 4289 5 602 4175 77 78 38 chr3RHet 2228694 2229384 -288123 - CIRCE LINE Composite -2317 4039 3322 5 602 809 102 70 35 chr3RHet 2259384 2259527 -257980 - DOC LINE Jockey -2868 1857 1710 5 602 3289 137 128 62 chr3RHet 2259706 2259854 -257653 + Gypsy12A_LTR LTR Gypsy 719 882 -1398 5 602 286 0 67 22 chr3RHet 2259854 2259899 -257608 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 5 602 3289 137 128 62 chr3RHet 2259899 2260716 -256791 + Gypsy12A_LTR LTR Gypsy 883 1748 -532 5 602 1516 35 5 0 chr3RHet 2260677 2260876 -256631 - DOC3_DM LINE Jockey -1 4739 4540 5 602 4157 38 30 0 chr3RHet 2260874 2261404 -256103 - DOC3_DM LINE Jockey -2043 2697 2152 5 602 2790 36 181 0 chr3RHet 2261439 2261943 -255564 + DMCR1A LINE CR1 1992 2586 -1884 5 602 5458 36 7 4 chr3RHet 2261924 2262616 -254891 + DMCR1A LINE CR1 2917 3610 -860 5 602 8679 28 12 0 chr3RHet 2262616 2263708 -253799 - PROTOP_A DNA P 0 1105 1 5 602 6709 27 27 2 chr3RHet 2263708 2264554 -252953 + DMCR1A LINE CR1 3604 4470 0 5 602 992 214 32 0 chr3RHet 2264564 2264784 -252723 - Gypsy6_I LTR Gypsy -2334 4678 4452 5 602 2938 254 72 10 chr3RHet 2264785 2265671 -251836 - Gypsy6_I LTR Gypsy -2703 4309 3369 5 602 2955 278 26 2 chr3RHet 2265676 2266569 -250938 - Gypsy6_I LTR Gypsy -3759 3253 2340 5 602 7225 38 3 0 chr3RHet 2270122 2271024 -246483 - DMCR1A LINE CR1 -1496 2974 2070 5 602 21 71 0 0 chr3RHet 2271044 2271086 -246421 + AT_rich Low_complexity Low_complexity 1 42 0 5 602 399 342 142 7 chr3RHet 2271232 2271541 -245966 + Gypsy6_I LTR Gypsy 1000 1350 -5662 5 602 6278 285 49 23 chr3RHet 2271576 2273849 -243658 + Gypsy6_I LTR Gypsy 1653 3983 -3029 5 602 26 64 0 0 chr3RHet 2274630 2274677 -242830 + AT_rich Low_complexity Low_complexity 1 47 0 5 602 5327 334 23 26 chr3RHet 2274823 2278961 -238546 - GTWIN_I LTR Gypsy -1534 4887 1202 5 602 2897 233 40 5 chr3RHet 2280360 2281007 -236500 + Gypsy6_I LTR Gypsy 3993 4662 -2350 5 602 299 263 126 0 chr3RHet 2281001 2281096 -236411 + Gypsy3_I LTR Gypsy 3991 4097 -2080 5 602 1376 228 20 0 chr3RHet 2281095 2281392 -236115 - Gypsy4_I LTR Gypsy -3499 2789 2487 5 602 9739 15 7 0 chr3RHet 2281392 2282489 -235018 + PROTOP_A DNA P 1 1105 0 5 602 2099 262 3 1 chr3RHet 2282489 2283039 -234468 - Gypsy4_I LTR Gypsy -2571 2707 2004 5 602 2109 301 25 18 chr3RHet 2283221 2284053 -233454 - Gypsy4_I LTR Gypsy -4895 1612 576 5 602 437 67 0 0 chr3RHet 2284349 2284409 -233098 - IDEFIX_LTR LTR Gypsy -528 66 7 5 602 29 0 0 0 chr3RHet 2284439 2284468 -233039 + AT_rich Low_complexity Low_complexity 1 29 0 5 602 2411 126 41 29 chr3RHet 2284505 2284923 -232584 - Invader1_LTR LTR Gypsy 0 423 1 5 602 976 128 164 24 chr3RHet 2284923 2285210 -232297 + DNAREP1_DM LINE Penelope 267 594 0 5 602 377 242 73 13 chr3RHet 2285079 2285230 -232277 - P_DG DNA P 0 2888 2729 5 602 1065 134 75 0 chr3RHet 2285468 2285655 -231852 - MAX_I LTR Pao -2621 5293 5093 5 602 1812 157 15 12 chr3RHet 2285646 2285974 -231533 - MAX_I LTR Pao -3475 4439 4111 5 602 1982 114 97 21 chr3RHet 2286001 2286600 -230907 - DOC4_DM LINE Jockey -10 2781 2260 5 602 746 254 96 27 chr3RHet 2286609 2286870 -230637 - DOC LINE Jockey -1278 3447 3162 5 602 3425 47 9 0 chr3RHet 2286911 2287335 -230172 - DMCR1A LINE CR1 0 4470 4043 5 602 1076 231 36 0 chr3RHet 2287334 2287581 -229926 - BURDOCK_I LTR Gypsy -5178 682 427 5 602 22 35 0 0 chr3RHet 2287711 2287740 -229767 + AT_rich Low_complexity Low_complexity 1 29 0 5 602 354 252 111 76 chr3RHet 2287809 2287981 -229526 - DOC LINE Jockey -1477 3248 3071 5 602 306 319 20 20 chr3RHet 2288188 2288335 -229172 - DOC LINE Jockey -2213 2527 2381 5 602 1629 88 26 4 chr3RHet 2288343 2288572 -228935 - DOC4_DM LINE Jockey -944 1847 1614 5 602 9393 62 77 2 chr3RHet 2288568 2289846 -227661 - DOC4_DM LINE Jockey -1437 1354 7 5 602 293 103 0 0 chr3RHet 2289914 2289953 -227554 - MAX_I LTR Pao -3793 4121 4083 5 602 3433 152 38 28 chr3RHet 2289936 2289998 -227509 - MAX_I LTR Pao -3968 3946 3894 5 602 407 95 14 0 chr3RHet 2289998 2290072 -227435 + (TTA)n Simple_repeat Simple_repeat 2 76 0 5 602 3433 152 38 28 chr3RHet 2290072 2290612 -226895 - MAX_I LTR Pao -4021 3893 3338 5 602 1480 173 166 0 chr3RHet 2290617 2290912 -226595 - MAX_I LTR Pao -5632 2282 1939 5 602 4538 101 69 5 chr3RHet 2291375 2292115 -225392 - I_DM LINE I -761 5470 4684 5 602 308 115 19 0 chr3RHet 2292124 2292176 -225331 - I_DM LINE I -2105 4126 4074 5 602 667 219 44 44 chr3RHet 2292181 2292410 -225097 + Gypsy_LTR LTR Gypsy 203 431 -51 5 602 1810 126 23 0 chr3RHet 2292470 2292779 -224728 - I_DM LINE I -2253 3978 3663 5 602 400 152 0 170 chr3RHet 2293098 2293233 -224274 + DMLTR5 LTR Gypsy 66 177 -89 5 602 784 104 104 7 chr3RHet 2293254 2293389 -224118 + HMSBEAGLE_I LTR Gypsy 245 392 -6137 5 602 51 17 0 0 chr3RHet 2293389 2293447 -224060 + AT_rich Low_complexity Low_complexity 1 58 0 5 602 26 50 0 0 chr3RHet 2293495 2293535 -223972 + AT_rich Low_complexity Low_complexity 1 40 0 5 602 4711 102 108 0 chr3RHet 2293617 2294305 -223202 + HMSBEAGLE_I LTR Gypsy 1217 1978 -4551 5 602 3013 199 1 60 chr3RHet 2294306 2294952 -222555 + HMSBEAGLE_I LTR Gypsy 2280 2887 -3642 5 602 6746 155 21 1 chr3RHet 2294989 2296050 -221457 + HMSBEAGLE_I LTR Gypsy 3087 4168 -2361 5 602 1982 104 0 0 chr3RHet 2296051 2296311 -221196 + HMSBEAGLE_I LTR Gypsy 4487 4746 -1783 5 602 6107 28 37 4 chr3RHet 2296311 2297039 -220468 - DMCR1A LINE CR1 0 4470 3719 5 602 856 77 112 7 chr3RHet 2297040 2297183 -220324 + HMSBEAGLE_I LTR Gypsy 4755 4912 -1617 5 602 225 212 63 105 chr3RHet 2297442 2297537 -219970 - TABOR_LTR LTR Gypsy -415 91 1 5 602 1858 332 32 18 chr3RHet 2297537 2299001 -218506 - Copia2_I LTR Copia -810 3352 1719 5 602 336 301 0 0 chr3RHet 2299032 2299145 -218362 - Copia2_I LTR Copia -2447 1715 1603 5 602 445 302 75 70 chr3RHet 2299470 2299775 -217732 - Copia2_I LTR Copia -2968 1194 817 5 602 606 135 10 0 chr3RHet 2300381 2300485 -217022 - I_DM LINE I -2558 3673 3569 5 602 635 131 0 20 chr3RHet 2300487 2300588 -216919 + STALKER4_LTR LTR Gypsy 274 372 -30 5 602 4665 165 98 60 chr3RHet 2300702 2302068 -215439 + STALKER4_I LTR Gypsy 292 1774 -4756 5 602 4817 104 87 15 chr3RHet 2302070 2302864 -214643 + STALKER4_I LTR Gypsy 1883 2733 -3797 5 602 1086 112 0 0 chr3RHet 2302868 2303020 -214487 + STALKER4_I LTR Gypsy 4563 4714 -1816 5 602 8461 72 3 6 chr3RHet 2303018 2304143 -213364 + STALKER4_I LTR Gypsy 4837 5957 -573 5 602 1355 99 38 5 chr3RHet 2304146 2304359 -213148 - FW_DM LINE Jockey -1184 3508 3289 5 602 1910 139 230 5 chr3RHet 2304360 2304743 -212764 - FW_DM LINE Jockey -1797 2895 2427 5 602 1788 139 33 0 chr3RHet 2304744 2305045 -212462 - FW_DM LINE Jockey -2516 2176 1866 5 602 26 0 0 0 chr3RHet 2305718 2305744 -211763 + AT_rich Low_complexity Low_complexity 1 26 0 5 602 6313 71 27 0 chr3RHet 2305748 2306614 -210893 - BS2 LINE Jockey 0 4721 3742 5 602 868 176 0 0 chr3RHet 2306692 2306840 -210667 - BS3_DM LINE Jockey -1595 195 48 5 602 487 239 123 18 chr3RHet 2306839 2307009 -210498 - BS2 LINE Jockey -1818 2903 2716 5 602 754 241 113 0 chr3RHet 2307016 2307219 -210288 - BS2 LINE Jockey -3816 905 680 5 602 423 244 235 0 chr3RHet 2307215 2307334 -210173 - BS2 LINE Jockey -4254 467 321 5 602 366 47 0 0 chr3RHet 2307470 2307513 -209994 + DNAREP1_DM LINE Penelope 405 447 -147 5 602 1620 3 0 0 chr3RHet 2308209 2308526 -208981 + (GAGAA)n Simple_repeat Simple_repeat 1 317 0 5 602 461 229 33 17 chr3RHet 2309552 2309672 -207835 + TOM_I LTR Gypsy 2413 2512 -3600 5 602 457 256 223 12 chr3RHet 2310070 2310442 -207065 + TOM_I LTR Gypsy 2469 3160 -2803 5 602 520 282 32 4 chr3RHet 2310474 2310757 -206750 + IDEFIX_I LTR Gypsy 3518 4033 -2027 5 602 377 285 92 29 chr3RHet 2310807 2311262 -206245 + IDEFIX_I LTR Gypsy 4260 4743 -1220 5 602 1943 140 91 105 chr3RHet 2311310 2312060 -205447 + DNAREP1_DM LINE Penelope 1 488 -106 5 602 2981 126 80 20 chr3RHet 2312076 2312626 -204881 - QUASIMODO_LTR LTR Gypsy -11 647 65 5 602 22031 35 33 1 chr3RHet 2312647 2317395 -200112 - DMRT1B LINE R1 -39 5144 242 5 602 5919 34 25 0 chr3RHet 2317395 2318605 -198902 - PROTOP DNA P 0 1105 1 5 602 24535 30 39 3 chr3RHet 2318605 2321713 -195794 + Copia2_I LTR Copia 940 4162 0 5 602 1257 20 60 0 chr3RHet 2321726 2321875 -195632 + Copia2_LTR_DM LTR Copia 41 198 0 5 602 2112 51 18 0 chr3RHet 2322104 2322380 -195127 - DOC5_DM LINE Jockey 0 4682 4402 5 602 1822 52 66 11 chr3RHet 2322358 2322632 -194875 - DOC5_DM LINE Jockey -196 4486 4198 5 602 15063 62 27 39 chr3RHet 2322674 2324835 -192672 + MDG1_I LTR Gypsy 1 2134 -4462 5 602 922 52 0 7 chr3RHet 2324848 2324983 -192524 - DOC5_DM LINE Jockey -147 4535 4402 5 602 1795 48 69 15 chr3RHet 2324961 2325235 -192272 - DOC5_DM LINE Jockey -196 4486 4198 5 602 7624 96 39 13 chr3RHet 2325277 2326472 -191035 + MDG1_I LTR Gypsy 1 1227 -5369 5 602 7766 49 20 2 chr3RHet 2326457 2327445 -190062 + MDG1_I LTR Gypsy 1129 2134 -4462 5 602 922 52 0 7 chr3RHet 2327458 2327593 -189914 - DOC5_DM LINE Jockey -147 4535 4402 5 602 1996 42 65 14 chr3RHet 2327571 2327863 -189644 - DOC5_DM LINE Jockey -196 4486 4180 5 602 432 56 0 0 chr3RHet 2327858 2327912 -189595 - DOC5_DM LINE Jockey -703 3979 3926 5 602 351 105 0 0 chr3RHet 2327927 2327984 -189523 + (TAA)n Simple_repeat Simple_repeat 3 59 0 5 602 2060 91 74 3 chr3RHet 2327986 2328284 -189223 + MDG1_LTR LTR Gypsy 94 412 -30 5 602 1948 30 52 0 chr3RHet 2328284 2328515 -188992 - DOC5_DM LINE Jockey -752 3930 3688 5 602 6402 37 24 1 chr3RHet 2328515 2329320 -188187 + PROTOP DNA P 1 823 -3657 5 602 5983 18 0 0 chr3RHet 2329315 2329994 -187513 + PROTOP DNA P 3802 4480 0 5 602 2926 36 90 3 chr3RHet 2329994 2330382 -187125 - DOC5_DM LINE Jockey -988 3694 3273 5 602 23068 34 46 10 chr3RHet 2330381 2333166 -184341 - BS LINE Jockey -5 5121 2236 5 602 6499 32 67 4 chr3RHet 2333166 2334005 -183502 - PROTOP DNA P 0 4480 3589 5 602 6506 29 19 1 chr3RHet 2333985 2334776 -182731 - PROTOP DNA P -2878 1602 798 5 602 1999 38 0 8 chr3RHet 2334774 2335016 -182491 - PROTOP DNA P -4212 268 29 5 602 6079 32 107 0 chr3RHet 2335020 2335806 -181701 - BS LINE Jockey -2883 2243 1374 5 602 2470 73 82 60 chr3RHet 2335820 2336273 -181234 - DOC5_DM LINE Jockey -1438 3244 2782 5 602 1919 45 29 4 chr3RHet 2336271 2336517 -180990 - DOC5_DM LINE Jockey -2341 2341 2090 5 602 2722 0 0 0 chr3RHet 2336517 2336815 -180692 - Invader3_LTR LTR Gypsy 0 298 1 5 602 2276 29 129 3 chr3RHet 2336832 2337142 -180365 + DOC2_DM LINE Jockey 6 354 -4439 5 602 4863 24 5 40 chr3RHet 2337135 2337781 -179726 + DOC2_DM LINE Jockey 765 1387 -3406 5 602 6519 11 0 0 chr3RHet 2337779 2338516 -178991 + DOC2_DM LINE Jockey 4055 4791 -2 5 602 11158 44 59 42 chr3RHet 2338527 2340175 -177332 - DOC5_DM LINE Jockey -2587 2095 420 5 602 2232 285 151 35 chr3RHet 2340190 2341593 -175914 + DMRT1A LINE R1 314 1891 -3292 5 602 2277 108 3 0 chr3RHet 2341592 2341915 -175592 + DMRT1A LINE R1 27 350 -4833 5 602 442 145 12 0 chr3RHet 2345253 2345336 -172171 + DMRT1A LINE R1 347 430 -4753 5 602 3492 82 29 0 chr3RHet 2345352 2345842 -171665 + DMRT1A LINE R1 516 1019 -4164 5 602 6089 76 42 6 chr3RHet 2345839 2346925 -170582 + DMRT1A LINE R1 1131 2593 -2590 5 602 3895 33 103 0 chr3RHet 2346916 2347439 -170068 - DOC5_DM LINE Jockey -2629 2053 1477 5 602 3352 74 110 13 chr3RHet 2347451 2347997 -169510 - DOC5_DM LINE Jockey -3557 1125 527 5 602 22 35 0 0 chr3RHet 2348003 2348032 -169475 + AT_rich Low_complexity Low_complexity 1 29 0 5 602 3383 85 139 50 chr3RHet 2348434 2349080 -168427 + PROTOP_B DNA P 1 704 -449 5 602 948 74 162 0 chr3RHet 2349112 2349260 -168247 + PROTOP_B DNA P 982 1153 0 5 602 866 156 6 0 chr3RHet 2349392 2349746 -167761 + (CATTA)n Simple_repeat Simple_repeat 1 355 0 5 602 438 153 0 0 chr3RHet 2349805 2349877 -167630 + DMRT1C LINE R1 6 77 -5366 5 602 2710 54 64 13 chr3RHet 2349872 2350247 -167260 + DMRT1C LINE R1 807 1200 -4243 5 602 6591 65 32 1 chr3RHet 2350247 2351134 -166373 + DMRT1C LINE R1 1720 2633 -2810 5 602 1171 81 111 0 chr3RHet 2351213 2351383 -166124 + DMRT1C LINE R1 3136 3324 -2119 5 602 2802 52 3 19 chr3RHet 2351383 2351754 -165753 + STALKER4_LTR LTR Gypsy 1 365 -37 5 602 2354 164 44 58 chr3RHet 2351869 2352537 -164970 + STALKER4_I LTR Gypsy 291 1036 -5494 5 602 2020 169 13 3 chr3RHet 2352510 2352896 -164611 + STALKER4_I LTR Gypsy 1426 1815 -4715 5 602 5307 114 12 8 chr3RHet 2352886 2353724 -163783 + STALKER4_I LTR Gypsy 2173 3013 -3517 5 602 1889 97 3 0 chr3RHet 2353724 2354033 -163474 - S_DM DNA Tc1 0 1736 1427 5 602 519 125 0 0 chr3RHet 2354032 2354104 -163403 + S_DM DNA Tc1 1168 1239 -497 5 602 523 87 12 12 chr3RHet 2354106 2354188 -163319 + S_DM DNA Tc1 1343 1424 -312 5 602 6095 38 4 0 chr3RHet 2354191 2354933 -162574 - DMCR1A LINE CR1 -66 4404 3660 5 602 235 59 0 56 chr3RHet 2354930 2354966 -162541 - DMCR1A LINE CR1 -1778 2692 2659 5 602 6488 32 70 10 chr3RHet 2354965 2355791 -161716 - DMCR1A LINE CR1 -1919 2551 1676 5 602 559 67 0 0 chr3RHet 2355788 2355863 -161644 - G4_DM LINE Jockey -130 3726 3652 5 602 3455 29 2 0 chr3RHet 2355869 2356279 -161228 - G4_DM LINE Jockey -338 3518 3108 5 602 15174 52 58 16 chr3RHet 2356290 2358560 -158947 - G4_DM LINE Jockey -826 3030 667 5 75 9384 16 4 3 chr3RHet 2358561 2359665 -157842 + PROTOP_A DNA P 1 1105 0 5 603 1087 71 17 56 chr3RHet 2359665 2359844 -157663 - G4_DM LINE Jockey -3184 672 501 5 603 1242 33 0 0 chr3RHet 2359835 2359988 -157519 - G4_DM LINE Jockey -3703 153 1 5 603 36 70 0 0 chr3RHet 2360675 2360746 -156761 + AT_rich Low_complexity Low_complexity 1 71 0 5 603 30 0 0 0 chr3RHet 2361252 2361282 -156225 + AT_rich Low_complexity Low_complexity 1 30 0 5 603 481 0 0 0 chr3RHet 2362804 2362858 -154649 - DIVER2_LTR LTR Pao 0 385 332 5 603 980 339 74 35 chr3RHet 2363136 2363588 -153919 + Gypsy4_I LTR Gypsy 2255 2776 -3084 5 603 1058 116 26 0 chr3RHet 2363588 2363777 -153730 + TLD2 Unknown Unknown 2 195 -23 5 603 980 339 74 35 chr3RHet 2363777 2364401 -153106 + Gypsy4_I LTR Gypsy 2777 3499 -2361 5 603 33 0 0 0 chr3RHet 2365210 2365243 -152264 + AT_rich Low_complexity Low_complexity 1 33 0 5 603 3809 216 142 21 chr3RHet 2365665 2367356 -150151 + DM297_I LTR Gypsy 3244 5209 -958 5 603 1790 272 34 21 chr3RHet 2367399 2368188 -149319 + DM297_I LTR Gypsy 5268 6066 -46 5 603 6590 16 33 1 chr3RHet 2368188 2368984 -148523 + PROTOP_A DNA P 1 821 -284 5 603 4884 16 0 0 chr3RHet 2368982 2369540 -147967 + FW_DM LINE Jockey 1638 2195 -2497 5 603 16047 19 16 19 chr3RHet 2369538 2371479 -146028 + FW_DM LINE Jockey 2758 4692 0 5 603 1968 26 4 0 chr3RHet 2371482 2371712 -145795 + PROTOP_A DNA P 814 1044 -61 5 603 1050 40 0 51 chr3RHet 2371715 2371873 -145634 + G_DM LINE Jockey 4197 4346 0 5 603 582 43 0 0 chr3RHet 2371864 2371934 -145573 + PROTOP_A DNA P 1033 1103 -2 5 603 1475 98 93 15 chr3RHet 2372179 2372447 -145060 - DNAREP1_DM LINE Penelope -305 289 1 5 603 417 57 0 0 chr3RHet 2372444 2372497 -145010 + DM297_LTR LTR Gypsy 340 392 -22 5 603 461 79 69 0 chr3RHet 2372580 2372681 -144826 + (TA)n Simple_repeat Simple_repeat 2 109 0 5 603 6697 37 99 9 chr3RHet 2372684 2373584 -143923 + S2_DM DNA Tc1 26 1006 -729 5 603 3803 41 18 2 chr3RHet 2373580 2374091 -143416 + S2_DM DNA Tc1 1203 1721 -14 5 603 185 0 40 0 chr3RHet 2374092 2374117 -143390 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 603 40 0 0 0 chr3RHet 2375036 2375076 -142431 + AT_rich Low_complexity Low_complexity 1 40 0 5 603 440 210 225 0 chr3RHet 2375192 2375330 -142177 - DNAREP1_DM LINE Penelope -150 444 276 5 603 1075 152 284 25 chr3RHet 2375466 2375886 -141621 + DNAREP1_DM LINE Penelope 101 540 -54 5 603 326 155 174 23 chr3RHet 2376247 2376333 -141174 - DNAREP1_DM LINE Penelope -64 530 432 5 603 252 125 0 77 chr3RHet 2376438 2376490 -141017 - DNAREP1_DM LINE Penelope -33 561 514 5 603 300 109 0 42 chr3RHet 2377333 2377381 -140126 - DNAREP1_DM LINE Penelope -150 444 399 5 603 357 236 107 90 chr3RHet 2377395 2377628 -139879 - DNAREP1_DM LINE Penelope -301 293 57 5 603 233 128 216 23 chr3RHet 2378846 2378934 -138573 - DNAREP1_DM LINE Penelope 0 594 490 5 603 445 161 72 41 chr3RHet 2379358 2379455 -138052 - DNAREP1_DM LINE Penelope -143 451 352 5 603 26 0 0 0 chr3RHet 2379518 2379544 -137963 + AT_rich Low_complexity Low_complexity 1 26 0 5 603 22 0 0 0 chr3RHet 2380712 2380734 -136773 + AT_rich Low_complexity Low_complexity 1 22 0 5 603 24 32 0 0 chr3RHet 2381730 2381761 -135746 + AT_rich Low_complexity Low_complexity 1 31 0 5 603 1322 108 33 46 chr3RHet 2382226 2382615 -134892 - DNAREP1_DM LINE Penelope -96 498 1 5 603 1789 146 168 8 chr3RHet 2382617 2382998 -134509 - DNAREP1_DM LINE Penelope 0 594 153 5 603 609 118 0 0 chr3RHet 2383433 2383552 -133955 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 603 894 122 0 0 chr3RHet 2383551 2383915 -133592 + (TTTA)n Simple_repeat Simple_repeat 1 364 0 5 603 894 122 0 0 chr3RHet 2430921 2431285 -86222 + (TTTA)n Simple_repeat Simple_repeat 1 364 0 5 603 3969 81 94 29 chr3RHet 2431304 2432576 -84931 - I_DM LINE I -3129 3102 1748 5 603 2500 21 0 0 chr3RHet 2432576 2432863 -84644 - Gypsy4_LTR LTR Gypsy 0 287 1 5 603 11892 60 3 11 chr3RHet 2432863 2434528 -82979 - I_DM LINE I -4480 1751 100 5 603 249 352 35 35 chr3RHet 2434583 2434783 -82724 - DIVER2_I LTR Pao -3510 637 438 5 603 2036 165 224 16 chr3RHet 2435568 2436331 -81176 - MINOS DNA Tc1 -317 1458 477 5 603 294 211 80 88 chr3RHet 2436329 2436454 -81053 + MINOS DNA Tc1 1319 1442 -333 5 603 1097 182 57 16 chr3RHet 2436487 2436733 -80774 - MINOS DNA Tc1 -1507 268 13 5 603 23 33 0 0 chr3RHet 2436813 2436843 -80664 + AT_rich Low_complexity Low_complexity 1 30 0 5 603 2058 149 113 12 chr3RHet 2436883 2437394 -80113 + DNAREP1_DM LINE Penelope 128 571 -23 5 603 247 88 0 0 chr3RHet 2437569 2437603 -79904 + DNAREP1_DM LINE Penelope 561 594 0 5 603 22 0 0 0 chr3RHet 2437856 2437878 -79629 + AT_rich Low_complexity Low_complexity 1 22 0 5 603 1744 69 122 7 chr3RHet 2438307 2438717 -78790 + DNAREP1_DM LINE Penelope 1 457 -137 5 603 472 268 33 66 chr3RHet 2439134 2439406 -78101 - DNAREP1_DM LINE Penelope -331 263 1 5 603 344 267 8 57 chr3RHet 2439849 2439972 -77535 - DNAREP1_DM LINE Penelope -85 509 393 5 603 324 231 51 0 chr3RHet 2440680 2440758 -76749 + DNAREP1_DM LINE Penelope 32 113 -481 5 603 38 22 0 0 chr3RHet 2440979 2441024 -76483 + AT_rich Low_complexity Low_complexity 1 45 0 5 603 27 0 0 0 chr3RHet 2441056 2441083 -76424 + AT_rich Low_complexity Low_complexity 1 27 0 5 603 573 173 93 7 chr3RHet 2441392 2441532 -75975 + DNAREP1_DM LINE Penelope 116 267 -327 5 603 34 0 0 0 chr3RHet 2441532 2441566 -75941 + AT_rich Low_complexity Low_complexity 1 34 0 5 603 329 154 0 0 chr3RHet 2441566 2441618 -75889 + DNAREP1_DM LINE Penelope 437 488 -106 5 603 483 139 0 0 chr3RHet 2441763 2441842 -75665 + DNAREP1_DM LINE Penelope 1 79 -515 5 603 207 98 48 24 chr3RHet 2441843 2441885 -75622 + A-rich Low_complexity Low_complexity 5 47 0 5 603 1949 151 109 109 chr3RHet 2441959 2442538 -74969 - DNAREP1_DM LINE Penelope -15 579 1 5 603 709 179 35 0 chr3RHet 2442654 2442799 -74708 - IDEFIX_I LTR Gypsy -1975 3653 3504 5 603 23 0 0 0 chr3RHet 2442976 2442999 -74508 + AT_rich Low_complexity Low_complexity 1 23 0 5 603 597 147 138 0 chr3RHet 2443410 2443526 -73981 - DNAREP1_DM LINE Penelope 0 594 463 5 603 328 182 0 0 chr3RHet 2443516 2443571 -73936 - DNAREP1_DM LINE Penelope -539 55 1 5 603 36 40 0 0 chr3RHet 2443571 2443621 -73886 + AT_rich Low_complexity Low_complexity 1 50 0 5 603 323 260 138 13 chr3RHet 2443857 2444009 -73498 + DMCR1A LINE CR1 3499 3669 -801 5 603 245 197 16 0 chr3RHet 2444098 2444157 -73350 - DNAREP1_DM LINE Penelope -270 324 265 5 603 1696 110 172 10 chr3RHet 2444157 2444470 -73037 - DNAREP1_DM LINE Penelope 0 594 231 5 603 547 143 0 0 chr3RHet 2444514 2444598 -72909 - DMCR1A LINE CR1 -593 3877 3794 5 603 543 154 19 9 chr3RHet 2444630 2444735 -72772 - DMCR1A LINE CR1 -1155 3315 3210 5 603 554 188 78 78 chr3RHet 2444820 2444999 -72508 - DNAREP1_DM LINE Penelope -415 179 1 5 603 490 69 468 20 chr3RHet 2448219 2448370 -69137 - DNAREP1_DM LINE Penelope 0 594 377 5 603 2371 4 0 0 chr3RHet 2448858 2449134 -68373 + Copia_LTR LTR Copia 1 276 0 5 603 40835 1 0 0 chr3RHet 2449134 2453728 -63779 + Copia_I LTR Copia 1 4593 0 5 603 2371 4 0 0 chr3RHet 2453728 2454004 -63503 + Copia_LTR LTR Copia 1 276 0 5 603 25 0 0 0 chr3RHet 2454005 2454030 -63477 + AT_rich Low_complexity Low_complexity 1 25 0 5 603 1081 157 130 0 chr3RHet 2454403 2454626 -62881 + DNAREP1_DM LINE Penelope 341 592 -2 5 603 30 0 0 0 chr3RHet 2454720 2454750 -62757 + AT_rich Low_complexity Low_complexity 1 30 0 5 603 180 0 0 0 chr3RHet 2454865 2454885 -62622 + (T)n Simple_repeat Simple_repeat 1 20 0 5 603 545 164 89 16 chr3RHet 2455457 2455581 -61926 - DMCR1A LINE CR1 -1731 2739 2607 5 603 982 119 6 6 chr3RHet 2455705 2455866 -61641 + DNAREP1_DM LINE Penelope 172 332 -262 5 603 3213 116 145 5 chr3RHet 2455926 2456507 -61000 - DMCR1A LINE CR1 -1880 2590 1929 5 603 2814 153 73 15 chr3RHet 2456548 2457067 -60440 - DMCR1A LINE CR1 -2688 1782 1234 5 603 603 120 344 0 chr3RHet 2457083 2457208 -60299 - DMCR1A LINE CR1 -3598 872 705 5 603 262 178 0 0 chr3RHet 2457242 2457287 -60220 - DMCR1A LINE CR1 -3851 619 575 5 603 922 149 18 98 chr3RHet 2457309 2457545 -59962 - DNAREP1_DM LINE Penelope -239 355 10 5 603 235 98 0 68 chr3RHet 2457547 2457591 -59916 + PROTOP_A DNA P 509 549 -556 5 603 1436 168 94 44 chr3RHet 2457589 2457995 -59512 - DMCR1A LINE CR1 -4038 432 7 5 603 253 191 58 14 chr3RHet 2458248 2458317 -59190 + DM176_LTR LTR Gypsy 295 366 -141 5 603 588 148 40 16 chr3RHet 2458334 2458458 -59049 + DMTOM1_LTR LTR Gypsy 284 410 0 5 603 409 100 14 28 chr3RHet 2458458 2458521 -58986 + DMTOM1_LTR LTR Gypsy 349 410 0 5 603 342 223 23 76 chr3RHet 2458521 2458652 -58855 + ROVER-I_DM LTR Gypsy 1 124 -6460 5 603 232 296 13 27 chr3RHet 2458753 2458902 -58605 + (TAAA)n Simple_repeat Simple_repeat 3 149 0 5 603 262 191 43 43 chr3RHet 2459091 2459206 -58301 + A-rich Low_complexity Low_complexity 3 117 0 5 603 10478 285 32 26 chr3RHet 2459232 2463633 -53874 + ROVER-I_DM LTR Gypsy 320 5266 -1318 5 603 1074 146 0 5 chr3RHet 2463631 2463824 -53683 + DM297_I LTR Gypsy 5490 5681 -486 5 603 826 126 0 83 chr3RHet 2463823 2463979 -53528 + DM176_I LTR Gypsy 6278 6420 0 5 603 253 191 58 14 chr3RHet 2464203 2464272 -53235 + DM176_LTR LTR Gypsy 295 366 -141 5 603 588 148 40 16 chr3RHet 2464289 2464413 -53094 + DMTOM1_LTR LTR Gypsy 284 410 0 5 603 409 100 14 28 chr3RHet 2464413 2464476 -53031 + DMTOM1_LTR LTR Gypsy 349 410 0 5 603 342 223 23 76 chr3RHet 2464476 2464607 -52900 + ROVER-I_DM LTR Gypsy 1 124 -6460 5 603 232 296 13 27 chr3RHet 2464708 2464857 -52650 + (TAAA)n Simple_repeat Simple_repeat 3 149 0 5 603 262 191 43 43 chr3RHet 2465046 2465161 -52346 + A-rich Low_complexity Low_complexity 3 117 0 5 603 10478 285 32 26 chr3RHet 2465187 2469588 -47919 + ROVER-I_DM LTR Gypsy 320 5266 -1318 5 603 1074 146 0 5 chr3RHet 2469586 2469779 -47728 + DM297_I LTR Gypsy 5490 5681 -486 5 603 826 126 0 83 chr3RHet 2469778 2469934 -47573 + DM176_I LTR Gypsy 6278 6420 0 5 603 253 191 58 14 chr3RHet 2470158 2470227 -47280 + DM176_LTR LTR Gypsy 295 366 -141 5 603 588 148 40 16 chr3RHet 2470244 2470368 -47139 + DMTOM1_LTR LTR Gypsy 284 410 0 5 603 409 100 14 28 chr3RHet 2470368 2470431 -47076 + DMTOM1_LTR LTR Gypsy 349 410 0 5 603 24 0 0 0 chr3RHet 2470438 2470462 -47045 + AT_rich Low_complexity Low_complexity 1 24 0 5 603 21 89 0 0 chr3RHet 2470498 2470554 -46953 + AT_rich Low_complexity Low_complexity 1 56 0 5 603 349 227 289 62 chr3RHet 2471015 2471265 -46242 - DNAREP1_DM LINE Penelope -284 310 4 5 603 264 182 180 11 chr3RHet 2472191 2472280 -45227 + DNAREP1_DM LINE Penelope 118 221 -373 5 603 1231 171 104 20 chr3RHet 2472285 2472679 -44828 + DNAREP1_DM LINE Penelope 1 546 -48 5 603 236 286 205 0 chr3RHet 2472678 2472790 -44717 + DNAREP1_DM LINE Penelope 281 415 -179 5 603 1218 93 273 9 chr3RHet 2473005 2473424 -44083 + DNAREP1_DM LINE Penelope 64 593 -1 5 603 22 0 0 0 chr3RHet 2473643 2473665 -43842 + AT_rich Low_complexity Low_complexity 1 22 0 5 603 767 133 209 0 chr3RHet 2475370 2475542 -41965 + DNAREP1_DM LINE Penelope 2 209 -385 5 603 1879 167 6 27 chr3RHet 2475535 2475989 -41518 + DNAREP1_DM LINE Penelope 90 450 -144 5 603 198 71 0 0 chr3RHet 2476249 2476277 -41230 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 5 603 261 146 0 0 chr3RHet 2476284 2476332 -41175 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 603 655 129 0 0 chr3RHet 2476401 2476502 -41005 - DNAREP1_DM LINE Penelope -484 110 10 5 603 51 70 0 0 chr3RHet 2478398 2478498 -39009 + AT_rich Low_complexity Low_complexity 1 100 0 5 603 292 144 520 80 chr3RHet 2479546 2479669 -37838 - DNAREP1_DM LINE Penelope 0 594 418 5 603 372 189 54 0 chr3RHet 2479719 2479793 -37714 - DNAREP1_DM LINE Penelope -510 84 7 5 603 450 244 60 60 chr3RHet 2479920 2480103 -37404 + DNAREP1_DM LINE Penelope 3 185 -409 5 603 273 98 0 0 chr3RHet 2481724 2481765 -35742 - DNAREP1_DM LINE Penelope -105 489 449 5 603 793 88 86 22 chr3RHet 2482568 2482707 -34800 - DNAREP1_DM LINE Penelope -264 330 183 5 603 27 49 0 0 chr3RHet 2482783 2482824 -34683 + AT_rich Low_complexity Low_complexity 1 41 0 5 603 42 57 0 0 chr3RHet 2483057 2483127 -34380 + AT_rich Low_complexity Low_complexity 1 70 0 5 603 4063 37 0 0 chr3RHet 2483580 2484071 -33436 - DMCR1A LINE CR1 -125 4345 3855 5 603 4505 62 120 6 chr3RHet 2484076 2484867 -32640 - DMCR1A LINE CR1 -979 3491 2611 5 603 31 68 0 0 chr3RHet 2484868 2484927 -32580 + AT_rich Low_complexity Low_complexity 1 59 0 5 603 15080 65 65 13 chr3RHet 2485075 2487837 -29670 + I_DM LINE I 103 3007 -3224 5 603 5450 38 5 3 chr3RHet 2488491 2489150 -28357 + IVK_DM LINE I 1 660 -4742 5 75 13551 50 103 10 chr3RHet 2489141 2491049 -26458 + IVK_DM LINE I 855 2940 -2462 5 604 3408 57 0 0 chr3RHet 2491049 2491474 -26033 + IVK_DM LINE I 4390 4814 -588 5 604 3747 39 36 0 chr3RHet 2491474 2491941 -25566 + IVK_DM LINE I 4917 5400 -2 5 604 238 175 73 73 chr3RHet 2492175 2492243 -25264 - Gypsy4_I LTR Gypsy -1897 4391 4324 5 604 3049 96 111 22 chr3RHet 2492871 2493368 -24139 - QUASIMODO_LTR LTR Gypsy -69 589 40 5 604 288 0 0 0 chr3RHet 2493368 2493400 -24107 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 604 3049 96 111 22 chr3RHet 2493400 2493443 -24064 - QUASIMODO_LTR LTR Gypsy -619 39 2 5 604 938 299 30 27 chr3RHet 2494481 2494883 -22624 - DOC2_DM LINE Jockey -537 4256 3854 5 604 472 368 0 22 chr3RHet 2495116 2495394 -22113 - DOC2_DM LINE Jockey -2075 2718 2447 5 604 671 295 45 30 chr3RHet 2495419 2495754 -21753 + Copia_I LTR Copia 1980 2319 -2274 5 604 762 97 0 0 chr3RHet 2496003 2496117 -21390 - BS LINE Jockey -15 5111 4998 5 604 423 281 47 12 chr3RHet 2496204 2496373 -21134 + Copia_I LTR Copia 3901 4075 -518 5 604 212 59 29 0 chr3RHet 2496425 2496459 -21048 + (TTAAA)n Simple_repeat Simple_repeat 4 38 0 5 604 1075 199 118 81 chr3RHet 2496508 2496981 -20526 + DNAREP1_DM LINE Penelope 137 593 -1 5 604 262 257 14 28 chr3RHet 2497151 2497223 -20284 + Copia_I LTR Copia 4438 4508 -85 5 604 4895 27 2 3 chr3RHet 2497295 2497890 -19617 - IDEFIX_LTR LTR Gypsy 0 594 1 5 604 8161 34 5 2 chr3RHet 2497890 2498945 -18562 - IDEFIX_I LTR Gypsy 0 5628 4571 5 604 5393 39 0 9 chr3RHet 2498945 2499637 -17870 - IDEFIX_I LTR Gypsy -2129 3499 2814 5 604 3277 5 0 0 chr3RHet 2499631 2500000 -17507 - IDEFIX_I LTR Gypsy -2941 2687 2319 5 604 11900 33 1 0 chr3RHet 2500000 2501436 -16071 - IDEFIX_I LTR Gypsy -3310 2318 881 5 604 6342 27 1 0 chr3RHet 2501434 2502202 -15305 - IDEFIX_I LTR Gypsy -4859 769 1 5 604 25 0 0 0 chr3RHet 2502472 2502497 -15010 + AT_rich Low_complexity Low_complexity 1 25 0 5 604 3237 30 13 0 chr3RHet 2502593 2502988 -14519 - IDEFIX_LTR LTR Gypsy -194 400 1 5 604 271 100 0 0 chr3RHet 2502956 2502996 -14511 + BARI1 DNA Tc1 3 42 -1708 5 604 1916 145 130 5 chr3RHet 2504106 2504798 -12709 - DNAREP1_DM LINE Penelope -10 584 58 5 604 427 121 0 0 chr3RHet 2506343 2506409 -11098 + DNAREP1_DM LINE Penelope 48 113 -481 5 604 1418 167 150 14 chr3RHet 2506522 2506869 -10638 - DNAREP1_DM LINE Penelope -31 563 170 5 604 320 145 161 0 chr3RHet 2506890 2506952 -10555 + DNAREP1_DM LINE Penelope 313 384 -210 5 604 41 66 0 0 chr3RHet 2507617 2507693 -9814 + AT_rich Low_complexity Low_complexity 1 76 0 5 604 242 164 0 113 chr3RHet 2507814 2507876 -9631 + PROTOP_B DNA P 487 541 -612 5 604 1296 116 235 58 chr3RHet 2508081 2508396 -9111 - DNAREP1_DM LINE Penelope -29 565 195 5 604 261 300 0 0 chr3RHet 2509103 2509173 -8334 - DNAREP1_DM LINE Penelope -149 445 376 5 604 540 199 125 13 chr3RHet 2509224 2509432 -8075 + DNAREP1_DM LINE Penelope 325 594 0 5 604 362 292 0 14 chr3RHet 2509484 2509623 -7884 - DNAREP1_DM LINE Penelope -401 193 57 5 604 209 132 113 0 chr3RHet 2509643 2509696 -7811 + (CTATT)n Simple_repeat Simple_repeat 3 61 0 5 604 256 45 21 43 chr3RHet 2509696 2509743 -7764 + (TTA)n Simple_repeat Simple_repeat 2 47 0 5 604 484 229 176 35 chr3RHet 2509879 2510078 -7429 - DNAREP1_DM LINE Penelope -62 532 306 5 604 252 241 0 0 chr3RHet 2510114 2510168 -7339 - DNAREP1_DM LINE Penelope -532 62 9 5 604 1699 130 158 24 chr3RHet 2510788 2511167 -6340 - DNAREP1_DM LINE Penelope -59 535 106 5 604 2671 84 139 27 chr3RHet 2511954 2512429 -5078 - DNAREP1_DM LINE Penelope -65 529 2 5 604 180 0 0 0 chr3RHet 2512934 2512954 -4553 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 5 604 203 219 0 76 chr3RHet 2512966 2513045 -4462 + A-rich Low_complexity Low_complexity 1 73 0 5 604 1388 183 112 60 chr3RHet 2513339 2513757 -3750 + PROTOP_B DNA P 183 622 -531 5 604 481 153 2 19 chr3RHet 2513848 2513951 -3556 + PROTOP_B DNA P 900 995 -158 5 604 31 0 0 0 chr3RHet 2514408 2514439 -3068 + AT_rich Low_complexity Low_complexity 1 31 0 5 604 731 169 31 18 chr3RHet 2515592 2515773 -1734 - DNAREP1_DM LINE Penelope -274 320 1 5 604 22 70 0 0 chr3RHet 2515952 2515995 -1512 + AT_rich Low_complexity Low_complexity 1 43 0 5