#                                                               --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name           accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
COX1	PF00115.20	CRX66571.1	-	1.2e-71	241.8	49.6	1.5e-71	241.6	49.6	1.0	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
ATP-synt_I	PF03899.15	CRX66576.1	-	0.71	10.3	9.0	2.1	8.7	3.1	2.3	1	1	1	2	2	2	0	ATP	synthase	I	chain
NADHdh	PF00146.21	CRX66578.1	-	1.2e-09	38.0	12.7	3.5e-08	33.1	12.7	2.2	1	1	0	1	1	1	1	NADH	dehydrogenase
COX2	PF00116.20	CRX66580.1	-	1e-24	86.7	0.2	1.9e-24	85.9	0.2	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cytochrome_B	PF00033.19	CRX66581.1	-	1.2e-30	106.7	11.3	1.2e-30	106.7	11.3	2.1	2	0	0	2	2	2	1	Cytochrome	b/b6/petB
Cytochrom_B_N_2	PF13631.6	CRX66581.1	-	5e-19	68.9	5.0	5e-19	68.9	5.0	2.1	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.17	CRX66581.1	-	0.44	10.9	5.9	0.13	12.6	0.6	2.6	2	1	0	2	2	2	0	Cytochrome	b(C-terminal)/b6/petD
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Myxozoa/Enteromyxum_leei-ASM145529v2/GCA_001455295.2_ASM145529v2_protein.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Myxozoa/Enteromyxum_leei-ASM145529v2/GCA_001455295.2_ASM145529v2_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Myxozoa/Enteromyxum_leei-ASM145529v2/GCA_001455295.2_ASM145529v2_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Myxozoa/Enteromyxum_leei-ASM145529v2/GCA_001455295.2_ASM145529v2_protein.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 16:23:32 2019
# [ok]