[asm_release] Thielavia terrestris NRRL 8126 8x Release [project ID 4043154] Assembly Stats: Main genome scaffold total: 8 Main genome contig total: 231 Main genome scaffold sequence total: 36.9 MB Main genome contig sequence total: 36.8 MB (-> 0.4% gap) Main genome scaffold N/L50: 3/4.6 MB Main genome contig N/L50: 44/281.2 KB Number of scaffolds > 50 KB: 8 % main genome in scaffolds > 50 KB: 100.0% Minimum Number Number Total Total Scaffold Scaffold of of Scaffold Contig Contig Length Scaffolds Contigs Length Length Coverage -------- --------- ------- ----------- ----------- -------- All 8 231 36,919,590 36,769,883 99.59% 1 kb 8 231 36,919,590 36,769,883 99.59% 2.5 kb 8 231 36,919,590 36,769,883 99.59% 5 kb 8 231 36,919,590 36,769,883 99.59% 10 kb 8 231 36,919,590 36,769,883 99.59% 25 kb 8 231 36,919,590 36,769,883 99.59% 50 kb 8 231 36,919,590 36,769,883 99.59% 100 kb 8 231 36,919,590 36,769,883 99.59% 250 kb 8 231 36,919,590 36,769,883 99.59% 500 kb 8 231 36,919,590 36,769,883 99.59% 1 mb 8 231 36,919,590 36,769,883 99.59% 2.5 mb 7 218 35,004,839 34,886,601 99.66% 5 mb 2 103 15,538,631 15,473,686 99.58% Coverage Stats: LIB COV. INSERT STDDEV ----- ------ --------------- FNOX 5.57x 2530 +/- 114 FPUA 0.11x 6712 +/- 731 FNOY 3.79x 8692 +/- 684 FNOZ 0.67x 33260 +/- 4445 Total 10.15x Completeness Stats: We placed EST sequences from 2 libraries CCPH and CCPI at 90% identity and 85% coverage. This is only a test to see if we are missing large portions of the genome. We only placed 5' ESTs that matched another 5' EST. 14779 trimmed sequences. 175 library artifacts. 14288 sequences placed at 90/85 (97.84%). 193 sequences have >=50 percent coverage at 90% ID (1.32%). 123 sequences are not found (0.84%). The assembly release directory can be found at: /home/jazz_analysis/assembly_releases/2007/Thielavia_terrestris/20081101 The scaffolds are divided into the following sets: 1) Main genome 2) Mitochondrion 3) Excluded scaffolds Production Stats: LIB INSERT READS FAILED(%) VECTOR(%) ----- ------ -------- ------------- ------------- FNOX 2530 339194 15815( 4.7) 5199( 1.5) FPUA 6712 8448 704( 8.3) 423( 5.0) FNOY 8692 263423 35117(13.3) 14412( 5.5) FNOZ 33260 88508 40497(45.8) 1489( 1.7) Total N/A 699573 92133(13.2) 21523( 3.1) LIB UNPAIRED(%) PAIRED(%) GOODP20 STDDEV ----- ------------- ------------- ---------------- FNOX 8914( 2.6) 309266(91.2) 751.41 +/-116.16 FPUA 269( 3.2) 7052(83.5) 640.18 +/-155.98 FNOY 10500( 4.0) 203394(77.2) 734.86 +/-132.68 FNOZ 3588( 4.1) 42934(48.5) 683.18 +/-174.53 Total 23271( 3.3) 562646(80.4) 738.38 +/-130.29 Please let me know if you need any additional information about this assembly. Thanks, Jeremy