##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Wed Jan 15 03:55:36 PST 2014",Epoch=1389786936868,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/FY1679/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT FY1679 chrI 12529 . A G 1067.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.826;DP=283;Dels=0.00;FS=52.434;HaplotypeScore=4.1769;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=1;MQRankSum=-0.875;QD=3.77;ReadPosRankSum=-4.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,58:283:99:1097,0,6901 chrI 12594 . A T 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;DP=415;Dels=0.00;FS=9.296;HaplotypeScore=2.4892;MLEAC=1;MLEAF=0.500;MQ=53.47;MQ0=3;MQRankSum=-7.089;QD=0.47;ReadPosRankSum=-7.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:355,60:415:99:225,0,10152 chrI 12620 . T C 3126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544;DP=526;Dels=0.00;FS=12.225;HaplotypeScore=9.6626;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=11;MQRankSum=-0.569;QD=5.94;ReadPosRankSum=-4.564;SB=-1.545e+03 GT:AD:DP:GQ:PL 0/1:349,177:526:99:3156,0,8668 chrI 12690 . A T 1794.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DP=850;Dels=0.00;FS=1.362;HaplotypeScore=16.6956;MLEAC=1;MLEAF=0.500;MQ=49.79;MQ0=42;MQRankSum=-5.084;QD=2.11;ReadPosRankSum=-3.713;SB=-1.339e+03 GT:AD:DP:GQ:PL 0/1:647,203:850:99:1824,0,15578 chrI 12716 . C T 383.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DP=766;Dels=0.00;FS=1.698;HaplotypeScore=53.1944;MLEAC=1;MLEAF=0.500;MQ=50.28;MQ0=38;MQRankSum=-3.137;QD=0.50;ReadPosRankSum=-3.121;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:636,129:766:99:413,0,15866 chrI 12764 . T C 721.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=527;Dels=0.00;FS=4.827;HaplotypeScore=2.7233;MLEAC=1;MLEAF=0.500;MQ=52.32;MQ0=15;MQRankSum=-1.130;QD=1.37;ReadPosRankSum=-3.972;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:438,88:527:99:751,0,11465 chrI 23742 . T A 240.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.630;DP=90;Dels=0.00;FS=181.392;HaplotypeScore=42.3206;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=-4.724;QD=2.67;ReadPosRankSum=-5.890;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:52,38:90:99:270,0,427 chrI 25340 . C A 4863.01 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=12;QD=27.63;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4863,406,0 chrI 25488 . G A 2315.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DP=111;Dels=0.00;FS=5.281;HaplotypeScore=29.4720;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=1;MQRankSum=2.182;QD=20.86;ReadPosRankSum=-0.727;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:19,92:111:36:2345,0,36 chrI 25497 . G A 1808.17 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.216;DP=88;Dels=0.00;FS=3.086;HaplotypeScore=25.2790;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=1;MQRankSum=0.913;QD=20.55;ReadPosRankSum=-0.118;SB=-1.314e+02 GT:AD:DP:GQ:PL 1/1:9,79:88:17:1841,17,0 chrI 25506 . C T 1258.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.016;DP=66;Dels=0.00;FS=5.857;HaplotypeScore=26.2967;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=1;MQRankSum=0.807;QD=19.06;ReadPosRankSum=0.883;SB=-1.317e+01 GT:AD:DP:GQ:PL 1/1:9,57:66:17:1291,17,0 chrI 25509 . G A 1153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;DP=74;Dels=0.00;FS=7.300;HaplotypeScore=18.6326;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=2;MQRankSum=-0.133;QD=15.58;ReadPosRankSum=-1.445;SB=-1.897e+01 GT:AD:DP:GQ:PL 0/1:7,67:74:49:1183,0,49 chrI 25512 . T C,G 728.13 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.236;DP=62;Dels=0.00;FS=5.112;HaplotypeScore=0.9958;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.87;MQ0=2;MQRankSum=0.124;QD=11.74;ReadPosRankSum=2.443;SB=11.87 GT:AD:DP:GQ:PL 1/2:9,6,47:62:32:786,648,751,32,0,63 chrI 25515 . A G 708.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;DP=70;Dels=0.00;FS=6.500;HaplotypeScore=18.6326;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=3;MQRankSum=-0.429;QD=10.11;ReadPosRankSum=2.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,55:70:99:738,0,183 chrI 25536 . G A 1196 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=26;QD=12.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:20,71:94:99:1229,120,0 chrI 25542 . A G 1075 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.8613;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=34;MQRankSum=-1.375;QD=9.27;ReadPosRankSum=2.292;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:25,87:116:60:1108,60,0 chrI 25557 . C G 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=24.7192;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=44;MQRankSum=0.095;QD=0.18;ReadPosRankSum=-2.767;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,14:153:57:57,0,1730 chrI 25560 . G A 1969 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.062;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=24.8259;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=45;MQRankSum=0.462;QD=12.87;ReadPosRankSum=1.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:38,115:153:99:2002,108,0 chrI 25584 . A G 2387 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=190;Dels=0.00;FS=21.038;HaplotypeScore=23.9014;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=62;MQRankSum=1.705;QD=12.56;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:48,141:190:99:2420,225,0 chrI 25590 . G A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=42.6571;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=66;MQRankSum=0.965;QD=0.09;ReadPosRankSum=2.880;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,14:196:47:47,0,2055 chrI 25596 . G A 502.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141;DP=201;Dels=0.00;FS=2.593;HaplotypeScore=42.6722;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=70;MQRankSum=0.763;QD=2.50;ReadPosRankSum=-0.470;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,44:201:99:532,0,1595 chrI 25599 . G A 478.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540;DP=204;Dels=0.00;FS=2.594;HaplotypeScore=31.6578;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=76;MQRankSum=-0.772;QD=2.34;ReadPosRankSum=-0.610;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,43:204:99:508,0,1606 chrI 25605 . C T 432.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;DP=203;Dels=0.00;FS=2.579;HaplotypeScore=22.2902;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=79;MQRankSum=-0.268;QD=2.13;ReadPosRankSum=0.724;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,39:203:99:462,0,1566 chrI 25608 . A T 371.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;DP=198;Dels=0.00;FS=2.571;HaplotypeScore=11.3051;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=81;MQRankSum=-1.128;QD=1.87;ReadPosRankSum=1.057;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,35:198:99:401,0,1514 chrI 25611 . G A 1464.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;DP=196;Dels=0.00;FS=22.695;HaplotypeScore=9.6508;MLEAC=1;MLEAF=0.500;MQ=21.33;MQ0=86;MQRankSum=1.886;QD=7.47;ReadPosRankSum=0.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,85:196:99:1494,0,403 chrI 25620 . G T 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.602;DP=182;Dels=0.00;FS=9.909;HaplotypeScore=12.1964;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=82;MQRankSum=-0.181;QD=1.64;ReadPosRankSum=1.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,29:182:99:328,0,1340 chrI 25623 . G A 1185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.280;DP=174;Dels=0.00;FS=29.091;HaplotypeScore=12.1964;MLEAC=1;MLEAF=0.500;MQ=20.14;MQ0=80;MQRankSum=2.654;QD=6.81;ReadPosRankSum=0.905;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,66:174:99:1215,0,370 chrI 25632 . A G 254.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.220;DP=168;Dels=0.00;FS=12.557;HaplotypeScore=8.3384;MLEAC=1;MLEAF=0.500;MQ=19.70;MQ0=80;MQRankSum=-0.102;QD=1.51;ReadPosRankSum=0.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,25:168:99:284,0,1155 chrI 25644 . A G 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;DP=174;Dels=0.00;FS=18.611;HaplotypeScore=13.8785;MLEAC=1;MLEAF=0.500;MQ=15.49;MQ0=108;MQRankSum=1.569;QD=0.79;ReadPosRankSum=0.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,17:174:99:167,0,759 chrI 25647 . G C 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=175;Dels=0.00;FS=18.594;HaplotypeScore=26.0118;MLEAC=1;MLEAF=0.500;MQ=14.89;MQ0=111;MQRankSum=2.184;QD=0.69;ReadPosRankSum=1.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,14:175:99:150,0,726 chrI 25650 . G A 148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=158;Dels=0.00;FS=27.137;HaplotypeScore=41.1741;MLEAC=1;MLEAF=0.500;MQ=13.14;MQ0=108;MQRankSum=3.030;QD=0.94;ReadPosRankSum=-1.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,13:158:99:178,0,397 chrI 25653 . G T 210.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;DP=144;Dels=0.00;FS=90.670;HaplotypeScore=42.6420;MLEAC=2;MLEAF=1.00;MQ=9.91;MQ0=111;MQRankSum=4.881;QD=1.46;ReadPosRankSum=-1.531;SB=-4.082e-02 GT:AD:DP:GQ:PL 1/1:128,16:144:24:243,24,0 chrI 25654 . C A 210.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=140;Dels=0.00;FS=64.948;HaplotypeScore=42.6420;MLEAC=2;MLEAF=1.00;MQ=9.75;MQ0=108;MQRankSum=4.096;QD=1.50;ReadPosRankSum=-3.018;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:124,9:140:24:243,24,0 chrI 25677 . A G 134.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.836;DP=156;Dels=0.00;FS=51.538;HaplotypeScore=6.5234;MLEAC=1;MLEAF=0.500;MQ=6.65;MQ0=125;MQRankSum=3.450;QD=0.86;ReadPosRankSum=-2.894;SB=14.74 GT:AD:DP:GQ:PL 1/1:150,5:156:15:167,15,0 chrI 25686 . G A 67.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.860;DP=159;Dels=0.00;FS=25.153;HaplotypeScore=6.7249;MLEAC=2;MLEAF=1.00;MQ=5.07;MQ0=131;MQRankSum=1.800;QD=0.43;ReadPosRankSum=-1.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:153,6:159:9:100,9,0 chrI 25692 . G C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;DP=164;Dels=0.00;FS=20.682;HaplotypeScore=3.8616;MLEAC=1;MLEAF=0.500;MQ=5.14;MQ0=135;MQRankSum=2.268;QD=0.16;ReadPosRankSum=-2.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,2:164:24:57,0,24 chrI 26106 . A G 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.597;DP=102;Dels=0.00;FS=18.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.93;MQ0=91;MQRankSum=2.520;QD=0.35;ReadPosRankSum=-0.278;SB=-3.426e+01 GT:AD:DP:GQ:PL 1/1:95,7:102:6:67,6,0 chrI 26115 . C T 158.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246;DP=102;Dels=0.00;FS=19.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.95;MQ0=88;MQRankSum=2.491;QD=1.55;ReadPosRankSum=-2.647;SB=-3.311e+01 GT:AD:DP:GQ:PL 1/1:91,11:102:18:191,18,0 chrI 26117 . A C 154.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.868;DP=102;Dels=0.00;FS=19.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.95;MQ0=88;MQRankSum=2.491;QD=1.51;ReadPosRankSum=-2.647;SB=-3.311e+01 GT:AD:DP:GQ:PL 1/1:91,11:102:18:187,18,0 chrI 26127 . A G 145.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=101;Dels=0.00;FS=13.877;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=8.99;MQ0=87;MQRankSum=2.333;QD=1.44;ReadPosRankSum=-1.344;SB=-3.281e+01 GT:AD:DP:GQ:PL 0/1:91,10:101:10:175,0,10 chrI 26130 . G A 150.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=99;Dels=0.00;FS=13.877;HaplotypeScore=4.4038;MLEAC=1;MLEAF=0.500;MQ=9.42;MQ0=85;MQRankSum=2.616;QD=1.52;ReadPosRankSum=-1.344;SB=-3.230e+01 GT:AD:DP:GQ:PL 0/1:89,10:99:9:180,0,9 chrI 26135 . C T 150.14 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DP=95;Dels=0.00;FS=12.861;HaplotypeScore=14.0002;MLEAC=1;MLEAF=0.500;MQ=9.14;MQ0=82;MQRankSum=1.929;QD=1.58;ReadPosRankSum=-0.694;SB=-3.288e+01 GT:AD:DP:GQ:PL 0/1:86,9:95:12:180,0,12 chrI 26136 . G A 201.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DP=95;Dels=0.00;FS=18.543;HaplotypeScore=14.0002;MLEAC=2;MLEAF=1.00;MQ=9.14;MQ0=82;MQRankSum=2.451;QD=2.12;ReadPosRankSum=-0.761;SB=-3.304e+01 GT:AD:DP:GQ:PL 1/1:85,10:95:21:234,21,0 chrI 26139 . G A 201.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.152;DP=97;Dels=0.00;FS=25.611;HaplotypeScore=15.5000;MLEAC=2;MLEAF=1.00;MQ=10.00;MQ0=81;MQRankSum=2.850;QD=2.07;ReadPosRankSum=0.061;SB=-3.307e+01 GT:AD:DP:GQ:PL 1/1:85,12:97:21:234,21,0 chrI 26145 . T C 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DP=94;Dels=0.00;FS=9.260;HaplotypeScore=13.9666;MLEAC=1;MLEAF=0.500;MQ=10.16;MQ0=78;MQRankSum=2.152;QD=0.50;ReadPosRankSum=0.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,5:94:77:77,0,113 chrI 26148 . A T 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DP=84;Dels=0.00;FS=2.363;HaplotypeScore=8.5645;MLEAC=1;MLEAF=0.500;MQ=10.62;MQ0=69;MQRankSum=1.872;QD=0.99;ReadPosRankSum=-0.194;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:77,6:84:79:113,0,79 chrI 26151 . G A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6902;MLEAC=1;MLEAF=0.500;MQ=12.66;MQ0=53;MQRankSum=0.796;QD=0.61;ReadPosRankSum=1.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,7:71:73:73,0,166 chrI 26154 . T C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;DP=74;Dels=0.00;FS=2.846;HaplotypeScore=17.7793;MLEAC=1;MLEAF=0.500;MQ=12.99;MQ0=52;MQRankSum=2.208;QD=0.45;ReadPosRankSum=2.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,4:74:63:63,0,174 chrI 26160 . G T 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DP=78;Dels=0.00;FS=24.428;HaplotypeScore=14.0388;MLEAC=1;MLEAF=0.500;MQ=13.97;MQ0=52;MQRankSum=2.410;QD=2.91;ReadPosRankSum=0.000;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:65,13:78:99:257,0,104 chrI 26163 . A G 320.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;DP=58;Dels=0.00;FS=54.948;HaplotypeScore=34.2104;MLEAC=1;MLEAF=0.500;MQ=16.35;MQ0=32;MQRankSum=3.881;QD=5.52;ReadPosRankSum=2.318;SB=-2.403e+01 GT:AD:DP:GQ:PL 0/1:41,17:58:23:350,0,23 chrI 26169 . G A 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.421;DP=49;Dels=0.00;FS=23.542;HaplotypeScore=29.4425;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=22;MQRankSum=1.286;QD=4.49;ReadPosRankSum=0.121;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:35,14:49:99:250,0,154 chrI 26171 . T C 251.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;DP=49;Dels=0.00;FS=53.921;HaplotypeScore=29.4425;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=22;MQRankSum=3.531;QD=5.12;ReadPosRankSum=1.301;SB=-2.402e+01 GT:AD:DP:GQ:PL 0/1:30,19:49:29:281,0,29 chrI 26173 . T G 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;DP=55;Dels=0.00;FS=66.582;HaplotypeScore=34.5129;MLEAC=1;MLEAF=0.500;MQ=17.61;MQ0=25;MQRankSum=4.002;QD=4.27;ReadPosRankSum=1.894;SB=-2.402e+01 GT:AD:DP:GQ:PL 0/1:36,19:55:32:265,0,32 chrI 26181 . C T 223.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;DP=62;Dels=0.00;FS=31.680;HaplotypeScore=14.9712;MLEAC=1;MLEAF=0.500;MQ=16.62;MQ0=31;MQRankSum=2.124;QD=3.60;ReadPosRankSum=1.885;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:48,14:62:99:253,0,153 chrI 26184 . A G 223.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;DP=70;Dels=0.00;FS=40.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.50;MQ0=35;MQRankSum=3.096;QD=3.19;ReadPosRankSum=1.440;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:54,16:70:99:253,0,154 chrI 26187 . T C 223.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156;DP=82;Dels=0.00;FS=40.522;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=15.25;MQ0=47;MQRankSum=3.427;QD=2.72;ReadPosRankSum=1.606;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:65,17:82:99:253,0,154 chrI 26221 . C T 254.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DP=177;Dels=0.00;FS=51.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.43;MQ0=146;MQRankSum=4.103;QD=1.44;ReadPosRankSum=-2.062;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:158,19:177:29:284,0,29 chrI 26225 . T C 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;DP=194;Dels=0.00;FS=46.602;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.51;MQ0=165;MQRankSum=3.881;QD=1.13;ReadPosRankSum=-1.644;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:178,16:194:32:250,0,32 chrI 26226 . G A 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.185;DP=206;Dels=0.00;FS=47.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.26;MQ0=176;MQRankSum=3.557;QD=1.07;ReadPosRankSum=-1.841;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:189,17:206:32:250,0,32 chrI 26331 . G A 577.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;DP=462;Dels=0.00;FS=10.969;HaplotypeScore=6.3923;MLEAC=1;MLEAF=0.500;MQ=12.17;MQ0=252;MQRankSum=3.501;QD=1.25;ReadPosRankSum=-2.992;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:378,84:462:99:607,0,2003 chrI 26412 . G C 328 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=8.14;MQ0=99;QD=2.36;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,139:139:45:361,45,0 chrI 26765 . T C 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;DP=92;Dels=0.00;FS=26.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.91;MQ0=77;MQRankSum=2.526;QD=2.22;ReadPosRankSum=0.938;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:80,12:92:32:234,0,32 chrI 26766 . G A 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;DP=97;Dels=0.00;FS=26.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.63;MQ0=82;MQRankSum=2.526;QD=2.10;ReadPosRankSum=0.794;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:85,12:97:32:234,0,32 chrI 26778 . C T 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.452;DP=166;Dels=0.00;FS=78.096;HaplotypeScore=9.3793;MLEAC=1;MLEAF=0.500;MQ=11.05;MQ0=134;MQRankSum=4.370;QD=2.74;ReadPosRankSum=1.443;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:143,22:166:80:485,0,80 chrI 26781 . A G 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;DP=172;Dels=0.00;FS=14.997;HaplotypeScore=9.3793;MLEAC=1;MLEAF=0.500;MQ=11.07;MQ0=139;MQRankSum=2.809;QD=0.56;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,11:172:99:126,0,466 chrI 26793 . A G 484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.979;DP=199;Dels=0.00;FS=89.214;HaplotypeScore=11.1126;MLEAC=1;MLEAF=0.500;MQ=10.32;MQ0=164;MQRankSum=4.674;QD=2.43;ReadPosRankSum=1.546;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:175,24:199:77:514,0,77 chrI 26799 . G A 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;DP=220;Dels=0.00;FS=21.463;HaplotypeScore=11.1126;MLEAC=1;MLEAF=0.500;MQ=9.89;MQ0=183;MQRankSum=2.460;QD=0.42;ReadPosRankSum=1.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,9:220:99:123,0,485 chrI 26835 . G A 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;DP=269;Dels=0.00;FS=74.514;HaplotypeScore=19.5068;MLEAC=1;MLEAF=0.500;MQ=10.32;MQ0=220;MQRankSum=5.379;QD=1.62;ReadPosRankSum=-0.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,23:269:99:466,0,201 chrI 26838 . A G 431.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.120;DP=275;Dels=0.00;FS=140.586;HaplotypeScore=31.5939;MLEAC=1;MLEAF=0.500;MQ=10.24;MQ0=224;MQRankSum=5.924;QD=1.57;ReadPosRankSum=-1.675;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:245,30:275:99:461,0,170 chrI 26839 . A G 397.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.603;DP=281;Dels=0.00;FS=75.796;HaplotypeScore=31.5939;MLEAC=1;MLEAF=0.500;MQ=10.13;MQ0=230;MQRankSum=4.896;QD=1.41;ReadPosRankSum=-1.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:258,23:281:99:427,0,204 chrI 26923 . C G 417.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DP=158;Dels=0.00;FS=66.709;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=9.73;MQ0=131;MQRankSum=3.832;QD=2.64;ReadPosRankSum=-2.546;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:140,18:158:8:447,0,8 chrI 26931 . A G 604.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;DP=180;Dels=0.00;FS=38.445;HaplotypeScore=18.1022;MLEAC=1;MLEAF=0.500;MQ=13.52;MQ0=131;MQRankSum=1.788;QD=3.36;ReadPosRankSum=2.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,28:180:99:634,0,278 chrI 26934 . G A 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DP=185;Dels=0.00;FS=4.823;HaplotypeScore=13.7158;MLEAC=1;MLEAF=0.500;MQ=14.48;MQ0=129;MQRankSum=1.405;QD=0.59;ReadPosRankSum=-1.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,10:185:99:139,0,860 chrI 26937 . G A 248.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;DP=193;Dels=0.00;FS=12.606;HaplotypeScore=28.3545;MLEAC=1;MLEAF=0.500;MQ=15.14;MQ0=129;MQRankSum=2.333;QD=1.29;ReadPosRankSum=-2.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,16:193:99:278,0,890 chrI 26940 . A G 235.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;DP=184;Dels=0.01;FS=7.375;HaplotypeScore=28.6178;MLEAC=1;MLEAF=0.500;MQ=16.24;MQ0=116;MQRankSum=3.636;QD=1.28;ReadPosRankSum=-1.901;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,16:183:99:265,0,1036 chrI 26949 . G A 1041.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;DP=193;Dels=0.00;FS=33.095;HaplotypeScore=29.9848;MLEAC=1;MLEAF=0.500;MQ=17.82;MQ0=110;MQRankSum=2.299;QD=5.39;ReadPosRankSum=1.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,53:193:99:1071,0,472 chrI 26954 . A T 960.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;DP=193;Dels=0.00;FS=28.052;HaplotypeScore=42.6042;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=107;MQRankSum=1.925;QD=4.97;ReadPosRankSum=1.304;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,55:193:99:990,0,545 chrI 26958 . G T 939.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;DP=190;Dels=0.00;FS=24.525;HaplotypeScore=39.6092;MLEAC=1;MLEAF=0.500;MQ=18.68;MQ0=102;MQRankSum=2.514;QD=4.94;ReadPosRankSum=0.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,46:190:99:969,0,578 chrI 26961 . A G 946.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DP=188;Dels=0.00;FS=19.751;HaplotypeScore=55.0379;MLEAC=1;MLEAF=0.500;MQ=19.13;MQ0=97;MQRankSum=2.164;QD=5.03;ReadPosRankSum=1.203;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,47:188:99:976,0,779 chrI 26964 . A T 942.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DP=198;Dels=0.00;FS=21.801;HaplotypeScore=66.6566;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=99;MQRankSum=0.021;QD=4.76;ReadPosRankSum=2.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,49:198:99:972,0,817 chrI 26970 . G A,T 1555.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.367;DP=194;Dels=0.00;FS=40.548;HaplotypeScore=17.2696;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.95;MQ0=93;MQRankSum=4.534;QD=8.02;ReadPosRankSum=-0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:109,35,50:194:99:1615,875,1000,552,0,656 chrI 26973 . A G 2190 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.966;DP=195;Dels=0.00;FS=91.811;HaplotypeScore=49.9637;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=91;MQRankSum=4.022;QD=11.23;ReadPosRankSum=-0.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:97,98:195:99:2223,169,0 chrI 26974 . A G 559.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.127;DP=199;Dels=0.00;FS=7.577;HaplotypeScore=49.9637;MLEAC=1;MLEAF=0.500;MQ=20.29;MQ0=93;MQRankSum=2.062;QD=2.81;ReadPosRankSum=-1.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,35:199:99:589,0,1285 chrI 26979 . G A 1160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;DP=196;Dels=0.00;FS=20.113;HaplotypeScore=34.6443;MLEAC=1;MLEAF=0.500;MQ=20.75;MQ0=88;MQRankSum=1.035;QD=5.92;ReadPosRankSum=0.134;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,64:196:99:1190,0,851 chrI 26981 . T C 1350 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;DP=196;Dels=0.00;FS=80.472;HaplotypeScore=33.6460;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=88;MQRankSum=3.641;QD=6.89;ReadPosRankSum=-0.760;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:93,103:196:79:1383,79,0 chrI 26983 . T G 1321 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.807;DP=197;Dels=0.00;FS=80.472;HaplotypeScore=33.0677;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=89;MQRankSum=3.524;QD=6.71;ReadPosRankSum=-0.848;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:94,103:197:76:1354,76,0 chrI 26991 . C T 1061.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.046;DP=221;Dels=0.00;FS=12.174;HaplotypeScore=35.6062;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=84;MQRankSum=-0.740;QD=4.80;ReadPosRankSum=1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,65:221:99:1091,0,1145 chrI 26994 . A G 1185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;DP=229;Dels=0.00;FS=15.828;HaplotypeScore=16.6993;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=84;MQRankSum=0.666;QD=5.17;ReadPosRankSum=1.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,75:229:99:1215,0,1142 chrI 26997 . T C 1215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.014;DP=257;Dels=0.00;FS=11.700;HaplotypeScore=22.6393;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=89;MQRankSum=0.299;QD=4.73;ReadPosRankSum=2.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,75:257:99:1245,0,1720 chrI 27027 . A T 3964.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.408;DP=261;Dels=0.00;FS=59.435;HaplotypeScore=10.4832;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=86;MQRankSum=2.902;QD=15.19;ReadPosRankSum=2.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:89,172:261:99:3964,333,0 chrI 27031 . C T 2514.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.865;DP=242;Dels=0.00;FS=12.355;HaplotypeScore=8.5115;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=86;MQRankSum=1.245;QD=10.39;ReadPosRankSum=-1.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,118:242:99:2544,0,449 chrI 27035 . T C 3272.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=231;Dels=0.00;FS=39.943;HaplotypeScore=9.5098;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=90;MQRankSum=2.380;QD=14.16;ReadPosRankSum=2.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:91,140:231:99:3272,279,0 chrI 27036 . G A 3181 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;DP=230;Dels=0.00;FS=35.172;HaplotypeScore=9.5098;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=89;MQRankSum=1.036;QD=13.83;ReadPosRankSum=1.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:91,139:230:99:3214,250,0 chrI 27044 . C T 3294.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.634;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.9913;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=90;MQRankSum=1.659;QD=14.20;ReadPosRankSum=-1.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:91,141:232:99:3294,270,0 chrI 27060 . A T 2863 filter AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=27.5109;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=84;QD=12.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:84,117:225:99:2896,265,0 chrI 27063 . G A 2600.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.7266;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=82;MQRankSum=0.397;QD=11.56;ReadPosRankSum=1.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,119:225:99:2630,0,112 chrI 27072 . A G 2667.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.7806;MLEAC=1;MLEAF=0.500;MQ=23.06;MQ0=81;MQRankSum=-0.101;QD=12.01;ReadPosRankSum=3.360;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,117:222:84:2697,0,84 chrI 27075 . G A 2727.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.643;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.8898;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=75;MQRankSum=-0.216;QD=12.68;ReadPosRankSum=4.114;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:95,119:215:66:2757,0,66 chrI 27080 . C T 2676.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.546;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=101.1728;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=72;MQRankSum=-0.810;QD=13.25;ReadPosRankSum=5.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,110:202:86:2706,0,86 chrI 27081 . G A,T 3050.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9033;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.26;MQ0=72;QD=15.10;SB=-6.563e-03 GT:AD:DP:GQ:PL 1/2:72,111,19:202:77:3110,351,77,2759,0,2723 chrI 27084 . G A 2716.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.679;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=62.8143;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=70;MQRankSum=0.224;QD=13.38;ReadPosRankSum=3.687;SB=-2.602e+00 GT:AD:DP:GQ:PL 0/1:82,121:203:71:2746,0,71 chrI 27090 . T C 1680.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DP=210;Dels=0.00;FS=20.871;HaplotypeScore=42.8737;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=68;MQRankSum=1.988;QD=8.00;ReadPosRankSum=1.834;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:118,92:210:99:1710,0,1167 chrI 27093 . A T 638.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991;DP=209;Dels=0.00;FS=14.091;HaplotypeScore=11.9730;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=64;MQRankSum=0.078;QD=3.05;ReadPosRankSum=0.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,36:209:99:668,0,2052 chrI 27096 . A G 361.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DP=187;Dels=0.00;FS=11.622;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=60;MQRankSum=0.600;QD=1.93;ReadPosRankSum=2.184;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,26:187:99:391,0,1969 chrI 27099 . T C 1691.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DP=184;Dels=0.00;FS=24.185;HaplotypeScore=5.1319;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=57;MQRankSum=0.272;QD=9.19;ReadPosRankSum=-1.329;SB=-6.320e+02 GT:AD:DP:GQ:PL 0/1:83,101:184:99:1721,0,438 chrI 27105 . A G,T 2561.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.706;DP=184;Dels=0.00;FS=13.424;HaplotypeScore=4.3432;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.98;MQ0=52;MQRankSum=1.522;QD=13.92;ReadPosRankSum=0.157;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/2:53,110,21:184:99:2621,453,227,2169,0,2124 chrI 27126 . T C 3986.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=206;Dels=0.00;FS=28.672;HaplotypeScore=3.7212;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=25;MQRankSum=0.582;QD=19.35;ReadPosRankSum=1.333;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:38,168:206:99:3986,141,0 chrI 27129 . C G 4440.01 filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=14;QD=22.89;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:11,180:194:99:4440,409,0 chrI 141030 . T A 2851 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=6;QD=30.01;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2884,262,0 chrI 141135 . A T 5386.01 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=6;QD=30.78;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:5386,451,0 chrI 152125 . G T 51.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.427;DP=145;Dels=0.01;FS=204.741;HaplotypeScore=32.2921;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=0.956;QD=0.35;ReadPosRankSum=-4.496;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:109,28:144:81:81,0,1325 chrI 163774 . C G 424 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:42:457,42,0 chrI 188708 . A G 208.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;DP=187;Dels=0.00;FS=48.399;HaplotypeScore=2.5218;MLEAC=1;MLEAF=0.500;MQ=45.38;MQ0=1;MQRankSum=-3.602;QD=1.11;ReadPosRankSum=0.806;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,24:187:99:238,0,4732 chrI 188824 . A G 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;DP=324;Dels=0.00;FS=89.811;HaplotypeScore=4.6510;MLEAC=1;MLEAF=0.500;MQ=48.02;MQ0=5;MQRankSum=0.490;QD=0.79;ReadPosRankSum=-4.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:273,50:324:99:287,0,7931 chrI 188881 . G C 4189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DP=465;Dels=0.00;FS=4.214;HaplotypeScore=4.3320;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=25;MQRankSum=-6.579;QD=9.01;ReadPosRankSum=1.252;SB=-2.165e+03 GT:AD:DP:GQ:PL 0/1:267,198:465:99:4189,0,7379 chrI 188939 . A G 4213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DP=455;Dels=0.00;FS=10.191;HaplotypeScore=6.6061;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=20;MQRankSum=-5.561;QD=9.26;ReadPosRankSum=2.170;SB=-1.910e+03 GT:AD:DP:GQ:PL 0/1:258,197:455:99:4213,0,7291 chrI 189031 . A G 254.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=329;Dels=0.00;FS=34.526;HaplotypeScore=9.2802;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=14;MQRankSum=-4.012;QD=0.77;ReadPosRankSum=-5.801;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:279,49:329:99:284,0,7885 chrI 189245 . A G 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;DP=210;Dels=0.00;FS=4.252;HaplotypeScore=6.9413;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=0;MQRankSum=-5.022;QD=0.09;ReadPosRankSum=-0.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,23:210:48:48,0,5558 chrI 193631 . A T 7743.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=32.26;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7743,641,0 chrI 199811 . T G 9818.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=34.21;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:9818,770,0 chrI 204959 . C G 192.06 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.81;MQ0=74;QD=2.26;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,85:85:21:225,21,0 chrI 205050 . C A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.03;MQ0=5;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:61,6,0 chrI 205082 . A G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;DP=120;Dels=0.00;FS=22.516;HaplotypeScore=14.3741;MLEAC=1;MLEAF=0.500;MQ=9.51;MQ0=83;MQRankSum=1.485;QD=0.22;ReadPosRankSum=-0.730;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,4:120:56:56,0,95 chrI 205085 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;DP=125;Dels=0.00;FS=38.163;HaplotypeScore=18.3019;MLEAC=1;MLEAF=0.500;MQ=9.88;MQ0=84;MQRankSum=2.165;QD=0.21;ReadPosRankSum=-2.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,7:125:56:56,0,97 chrI 205091 . A G 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;DP=145;Dels=0.00;FS=44.476;HaplotypeScore=28.1779;MLEAC=1;MLEAF=0.500;MQ=9.78;MQ0=98;MQRankSum=2.663;QD=0.50;ReadPosRankSum=-1.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,9:145:99:102,0,112 chrI 205097 . C T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.533;DP=149;Dels=0.00;FS=130.623;HaplotypeScore=20.3222;MLEAC=1;MLEAF=0.500;MQ=9.72;MQ0=101;MQRankSum=4.069;QD=0.77;ReadPosRankSum=-1.623;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:130,19:149:64:145,0,64 chrI 205100 . C T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;DP=155;Dels=0.00;FS=132.754;HaplotypeScore=17.3521;MLEAC=1;MLEAF=0.500;MQ=9.71;MQ0=106;MQRankSum=3.991;QD=0.74;ReadPosRankSum=-0.708;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:136,19:155:68:145,0,68 chrI 205101 . G A 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DP=155;Dels=0.00;FS=86.091;HaplotypeScore=17.3521;MLEAC=1;MLEAF=0.500;MQ=9.71;MQ0=106;MQRankSum=3.417;QD=0.61;ReadPosRankSum=-0.510;SB=0.048 GT:AD:DP:GQ:PL 0/1:140,15:155:91:124,0,91 chrI 205106 . C T 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;DP=170;Dels=0.00;FS=158.764;HaplotypeScore=10.4559;MLEAC=1;MLEAF=0.500;MQ=10.07;MQ0=113;MQRankSum=4.372;QD=0.86;ReadPosRankSum=-0.170;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:146,24:170:65:176,0,65 chrI 205109 . T C 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.736;DP=180;Dels=0.00;FS=86.218;HaplotypeScore=16.4841;MLEAC=1;MLEAF=0.500;MQ=10.46;MQ0=119;MQRankSum=3.473;QD=0.46;ReadPosRankSum=-0.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,20:180:99:112,0,201 chrI 205119 . T G 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DP=192;Dels=0.00;FS=135.096;HaplotypeScore=21.3449;MLEAC=1;MLEAF=0.500;MQ=10.88;MQ0=128;MQRankSum=3.949;QD=1.04;ReadPosRankSum=-1.290;SB=0.259 GT:AD:DP:GQ:PL 0/1:159,26:192:99:230,0,127 chrI 205121 . G A 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;DP=192;Dels=0.00;FS=154.752;HaplotypeScore=20.4483;MLEAC=1;MLEAF=0.500;MQ=10.88;MQ0=128;MQRankSum=4.218;QD=1.35;ReadPosRankSum=-1.182;SB=-8.884e-01 GT:AD:DP:GQ:PL 0/1:158,33:192:99:290,0,113 chrI 205130 . T C 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=194;Dels=0.00;FS=104.299;HaplotypeScore=27.2652;MLEAC=1;MLEAF=0.500;MQ=11.02;MQ0=128;MQRankSum=3.902;QD=0.99;ReadPosRankSum=-0.943;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,29:194:99:222,0,193 chrI 205145 . C T 383.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.427;DP=193;Dels=0.00;FS=146.653;HaplotypeScore=22.2514;MLEAC=1;MLEAF=0.500;MQ=11.67;MQ0=124;MQRankSum=4.427;QD=1.98;ReadPosRankSum=0.180;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:150,43:193:48:413,0,48 chrI 205146 . A G 399.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;DP=193;Dels=0.00;FS=146.653;HaplotypeScore=22.2514;MLEAC=1;MLEAF=0.500;MQ=11.67;MQ0=124;MQRankSum=4.464;QD=2.07;ReadPosRankSum=0.390;SB=1.45 GT:AD:DP:GQ:PL 0/1:149,43:193:76:429,0,76 chrI 205150 . G A 403.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.754;DP=194;Dels=0.00;FS=150.083;HaplotypeScore=16.3290;MLEAC=1;MLEAF=0.500;MQ=11.89;MQ0=123;MQRankSum=4.338;QD=2.08;ReadPosRankSum=1.009;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:147,46:194:46:433,0,46 chrI 205163 . A T 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;DP=135;Dels=0.00;FS=100.537;HaplotypeScore=31.9534;MLEAC=1;MLEAF=0.500;MQ=12.74;MQ0=77;MQRankSum=3.410;QD=1.00;ReadPosRankSum=2.050;SB=1.11 GT:AD:DP:GQ:PL 0/1:94,40:135:62:165,0,62 chrI 205184 . A G 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;DP=103;Dels=0.00;FS=6.247;HaplotypeScore=13.3734;MLEAC=1;MLEAF=0.500;MQ=16.84;MQ0=40;MQRankSum=0.052;QD=1.33;ReadPosRankSum=0.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,30:103:99:167,0,311 chrI 205187 . T C 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.4092;MLEAC=1;MLEAF=0.500;MQ=17.62;MQ0=33;MQRankSum=0.469;QD=1.44;ReadPosRankSum=-0.440;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,32:94:99:165,0,304 chrI 205190 . G A 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=84;Dels=0.00;FS=3.502;HaplotypeScore=18.1966;MLEAC=1;MLEAF=0.500;MQ=18.03;MQ0=28;MQRankSum=-0.511;QD=1.13;ReadPosRankSum=-0.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,31:84:99:125,0,269 chrI 205198 . A C 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=17.3952;MLEAC=1;MLEAF=0.500;MQ=18.25;MQ0=23;MQRankSum=-2.247;QD=1.64;ReadPosRankSum=0.735;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:26,47:73:64:150,0,64 chrI 205200 . A G 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.860;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=17.3952;MLEAC=1;MLEAF=0.500;MQ=18.91;MQ0=18;MQRankSum=-2.655;QD=1.81;ReadPosRankSum=0.980;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,47:68:33:153,0,33 chrI 205202 . C T 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=17.5236;MLEAC=1;MLEAF=0.500;MQ=18.77;MQ0=20;MQRankSum=-0.686;QD=1.29;ReadPosRankSum=1.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,26:72:99:123,0,235 chrI 205208 . T C 294.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=21.3928;MLEAC=1;MLEAF=0.500;MQ=18.39;MQ0=24;MQRankSum=-0.109;QD=4.08;ReadPosRankSum=1.418;SB=1.45 GT:AD:DP:GQ:PL 0/1:30,42:72:48:324,0,48 chrI 205211 . C A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.4468;MLEAC=1;MLEAF=0.500;MQ=16.98;MQ0=31;MQRankSum=-0.264;QD=1.35;ReadPosRankSum=0.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,23:77:99:134,0,179 chrI 205217 . A G 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=11.4610;MLEAC=1;MLEAF=0.500;MQ=16.91;MQ0=26;MQRankSum=0.547;QD=1.30;ReadPosRankSum=-0.876;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,17:67:83:117,0,83 chrI 205220 . C T 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.5892;MLEAC=1;MLEAF=0.500;MQ=16.55;MQ0=27;MQRankSum=-0.705;QD=1.74;ReadPosRankSum=-2.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,21:65:80:143,0,80 chrI 205223 . T A 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=1;MLEAF=0.500;MQ=16.44;MQ0=30;MQRankSum=-0.264;QD=0.72;ReadPosRankSum=1.761;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,17:69:80:80,0,144 chrI 205226 . A G 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=27.0386;MLEAC=1;MLEAF=0.500;MQ=16.46;MQ0=32;MQRankSum=-1.041;QD=1.13;ReadPosRankSum=-0.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,20:72:99:111,0,143 chrI 205232 . C T 216.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=72;Dels=0.00;FS=9.031;HaplotypeScore=30.0584;MLEAC=1;MLEAF=0.500;MQ=16.46;MQ0=32;MQRankSum=0.409;QD=3.00;ReadPosRankSum=0.900;SB=-3.021e+00 GT:AD:DP:GQ:PL 0/1:37,35:72:27:246,0,27 chrI 205235 . C T 123.14 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=67;Dels=0.00;FS=9.165;HaplotypeScore=17.4590;MLEAC=1;MLEAF=0.500;MQ=15.40;MQ0=34;MQRankSum=1.738;QD=1.84;ReadPosRankSum=1.186;SB=-3.152e+00 GT:AD:DP:GQ:PL 0/1:38,29:67:12:153,0,12 chrI 205236 . G A 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;DP=67;Dels=0.00;FS=3.724;HaplotypeScore=17.4590;MLEAC=1;MLEAF=0.500;MQ=15.40;MQ0=34;MQRankSum=-0.055;QD=1.39;ReadPosRankSum=2.677;SB=-6.588e-03 GT:AD:DP:GQ:PL 0/1:48,19:67:45:123,0,45 chrI 205241 . C T 92.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DP=68;Dels=0.00;FS=3.912;HaplotypeScore=7.7437;MLEAC=1;MLEAF=0.500;MQ=14.87;MQ0=36;MQRankSum=0.537;QD=1.35;ReadPosRankSum=2.609;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:49,19:68:15:122,0,15 chrI 205244 . T C 93.07 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DP=67;Dels=0.00;FS=4.122;HaplotypeScore=4.8702;MLEAC=1;MLEAF=0.500;MQ=14.84;MQ0=36;MQRankSum=-0.020;QD=1.39;ReadPosRankSum=2.210;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:48,19:67:15:123,0,15 chrI 205254 . T G 96.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=65;Dels=0.00;FS=12.788;HaplotypeScore=3.7836;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=37;MQRankSum=-1.004;QD=1.48;ReadPosRankSum=-1.369;SB=-3.081e+00 GT:AD:DP:GQ:PL 0/1:38,18:65:15:126,0,15 chrI 205256 . G A 96.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;DP=65;Dels=0.00;FS=14.472;HaplotypeScore=3.7836;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=37;MQRankSum=-0.743;QD=1.48;ReadPosRankSum=-1.486;SB=-3.085e+00 GT:AD:DP:GQ:PL 0/1:38,27:65:15:126,0,15 chrI 205265 . T C 96.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;DP=61;Dels=0.00;FS=13.617;HaplotypeScore=2.7853;MLEAC=1;MLEAF=0.500;MQ=13.75;MQ0=38;MQRankSum=-0.980;QD=1.57;ReadPosRankSum=-1.734;SB=-3.083e+00 GT:AD:DP:GQ:PL 0/1:39,22:61:15:126,0,15 chrI 205403 . A G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899;DP=292;Dels=0.00;FS=25.852;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.33;MQ0=230;MQRankSum=1.815;QD=0.39;ReadPosRankSum=1.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:255,37:292:99:144,0,141 chrI 205625 . C T 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=16.6444;MLEAC=1;MLEAF=0.500;MQ=17.93;MQ0=164;MQRankSum=3.111;QD=0.66;ReadPosRankSum=-4.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:256,29:285:99:219,0,2428 chrI 205679 . C T 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.856;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=23.9707;MLEAC=1;MLEAF=0.500;MQ=19.89;MQ0=127;MQRankSum=1.901;QD=0.29;ReadPosRankSum=-4.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,14:239:99:99,0,2219 chrI 205685 . C T 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.651;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=46.6167;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=120;MQRankSum=-2.178;QD=1.27;ReadPosRankSum=-4.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,34:230:99:323,0,2043 chrI 205700 . T C 419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.598;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=23.3585;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=126;MQRankSum=0.983;QD=1.79;ReadPosRankSum=-0.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,41:234:99:449,0,1869 chrI 205751 . C T 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=41.7004;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=82;MQRankSum=-2.214;QD=0.43;ReadPosRankSum=1.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,30:228:99:127,0,3047 chrI 205760 . C T 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.168;DP=262;Dels=0.00;FS=4.762;HaplotypeScore=42.4324;MLEAC=1;MLEAF=0.500;MQ=26.07;MQ0=85;MQRankSum=-5.232;QD=1.05;ReadPosRankSum=-1.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:205,57:262:99:305,0,3627 chrI 205787 . T C 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;DP=384;Dels=0.00;FS=61.431;HaplotypeScore=17.4636;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=126;MQRankSum=-6.894;QD=0.96;ReadPosRankSum=-3.639;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:289,95:384:99:397,0,4699 chrI 205811 . C T 2245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;DP=459;Dels=0.00;FS=175.506;HaplotypeScore=2.9401;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=106;MQRankSum=-6.179;QD=4.89;ReadPosRankSum=-2.806;SB=-5.930e+02 GT:AD:DP:GQ:PL 0/1:284,175:459:99:2275,0,4643 chrI 205829 . T C 2422.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.288;DP=467;Dels=0.00;FS=107.134;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.78;MQ0=91;MQRankSum=-8.786;QD=5.19;ReadPosRankSum=4.009;SB=-5.770e+02 GT:AD:DP:GQ:PL 0/1:283,184:467:99:2452,0,5097 chrI 205835 . C T 2429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.772;DP=451;Dels=0.00;FS=96.248;HaplotypeScore=2.9100;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=87;MQRankSum=-8.671;QD=5.39;ReadPosRankSum=6.423;SB=-5.270e+02 GT:AD:DP:GQ:PL 0/1:273,178:451:99:2459,0,4843 chrI 205886 . T C 1758.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.497;DP=404;Dels=0.00;FS=139.846;HaplotypeScore=43.9985;MLEAC=1;MLEAF=0.500;MQ=43.74;MQ0=5;MQRankSum=-11.027;QD=4.35;ReadPosRankSum=-5.544;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:293,111:404:99:1788,0,8392 chrI 205913 . T C 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=373;Dels=0.00;FS=43.056;HaplotypeScore=26.9938;MLEAC=1;MLEAF=0.500;MQ=48.44;MQ0=2;MQRankSum=-5.275;QD=0.82;ReadPosRankSum=3.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,50:373:99:336,0,9512 chrI 206126 . T C 2089 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=1;QD=27.85;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2122,207,0 chrI 206129 . A C 1845 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=1;QD=25.99;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1878,183,0 chrI 206132 . G T 1573 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=1;QD=27.60;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1606,156,0 chrI 206144 . C T 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;MQRankSum=-0.547;QD=20.04;ReadPosRankSum=0.957;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1556,128,0 chrI 206351 . T C 686.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DP=372;Dels=0.00;FS=107.318;HaplotypeScore=8.9746;MLEAC=1;MLEAF=0.500;MQ=51.48;MQ0=8;MQRankSum=-3.792;QD=1.84;ReadPosRankSum=-1.544;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:297,74:372:99:716,0,7734 chrI 206354 . G T 714.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=365;Dels=0.00;FS=106.423;HaplotypeScore=7.0832;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=8;MQRankSum=-3.995;QD=1.96;ReadPosRankSum=0.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,70:365:99:744,0,7935 chrI 206375 . C T 1479.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DP=377;Dels=0.00;FS=32.438;HaplotypeScore=9.0377;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=9;MQRankSum=-3.564;QD=3.92;ReadPosRankSum=3.215;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:283,93:376:99:1509,0,7513 chrI 206462 . T C 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525;DP=408;Dels=0.00;FS=1.217;HaplotypeScore=30.1986;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=21;MQRankSum=-3.218;QD=0.50;ReadPosRankSum=-3.816;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:345,61:408:99:233,0,8856 chrI 210818 . A T 5964.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=13;MQRankSum=1.217;QD=28.67;ReadPosRankSum=0.151;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5964,499,0 chrI 211019 . T C 6150.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=2;QD=30.60;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:6150,535,0 chrI 225099 . G A 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.593;DP=172;Dels=0.01;FS=161.631;HaplotypeScore=12.4428;MLEAC=1;MLEAF=0.500;MQ=33.89;MQ0=12;MQRankSum=-1.852;QD=0.53;ReadPosRankSum=-6.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,37:171:99:121,0,539 chrI 230215 . T G 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=35.4714;MLEAC=1;MLEAF=0.500;MQ=30.33;MQ0=5;MQRankSum=4.816;QD=1.41;ReadPosRankSum=1.841;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,9:86:99:151,0,1318 chrI 230217 . G T 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=21.3595;MLEAC=1;MLEAF=0.500;MQ=30.31;MQ0=1;MQRankSum=3.541;QD=1.75;ReadPosRankSum=2.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,5:40:99:100,0,579 chrII 796 . T C 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;DP=199;Dels=0.00;FS=34.773;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=10.92;MQ0=137;MQRankSum=1.198;QD=0.64;ReadPosRankSum=0.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:181,18:199:99:158,0,588 chrII 1254 . T C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;DP=281;Dels=0.00;FS=7.354;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=136;MQRankSum=1.281;QD=0.12;ReadPosRankSum=0.176;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:268,13:281:64:64,0,1911 chrII 2117 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=10.91;MQ0=145;MQRankSum=3.237;QD=0.09;ReadPosRankSum=2.750;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,6:226:51:51,0,281 chrII 2159 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.6823;MLEAC=1;MLEAF=0.500;MQ=6.59;MQ0=138;MQRankSum=3.175;QD=0.05;ReadPosRankSum=-3.024;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:216,4:220:41:41,0,66 chrII 2335 . C A 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.828;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.27;MQ0=188;MQRankSum=-2.819;QD=0.66;ReadPosRankSum=-0.497;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,16:261:99:202,0,1227 chrII 2354 . A G 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.88;MQ0=205;MQRankSum=-1.641;QD=0.16;ReadPosRankSum=-0.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:260,8:268:74:74,0,1060 chrII 6440 . G C 5311.01 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=6;QD=28.25;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:5311,475,0 chrII 7510 . G A 1793 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=16;QD=18.11;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1826,174,0 chrII 7511 . G A 1793 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=16;QD=18.11;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1826,174,0 chrII 15101 . T G 7403.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.5225;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=35.09;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:7403,566,0 chrII 15510 . G T 6884.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=33.75;SB=-3.695e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6884,545,0 chrII 15518 . A G 7778.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=32.68;SB=-4.130e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7778,602,0 chrII 16380 . C T 9584.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=12.1886;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=33.87;SB=-3.810e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:9584,716,0 chrII 16392 . A G 9190.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=33.42;SB=-4.184e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:9190,716,0 chrII 19056 . T G 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.192;DP=238;Dels=0.00;FS=203.434;HaplotypeScore=49.9641;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=-0.883;QD=1.50;ReadPosRankSum=-3.471;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,103:238:99:386,0,3912 chrII 30012 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=18.62;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3854,387,0 chrII 30050 . A G 2740 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=44;QD=12.69;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:17,199:216:99:2773,270,0 chrII 30210 . T C 426 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=55;Dels=0.00;FS=3.010;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=23;MQRankSum=0.325;QD=7.75;ReadPosRankSum=0.650;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:42:459,42,0 chrII 30658 . G T 149.13 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.82;MQ0=108;QD=1.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:98,21:119:18:182,18,0 chrII 30660 . T C 149.13 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.84;MQ0=107;QD=1.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:98,20:118:18:182,18,0 chrII 30723 . G A 35.77 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.01;MQ0=73;QD=0.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:72,5:77:6:67,6,0 chrII 30848 . C G 1054 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.16;MQ0=66;QD=8.05;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:39,92:131:99:1087,126,0 chrII 35485 . C T 2222 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.54;MQ0=28;QD=16.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2255,205,0 chrII 59755 . T C 7692.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=35.94;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:7692,572,0 chrII 137684 . G A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.544;DP=165;Dels=0.04;FS=267.062;HaplotypeScore=30.5771;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=4.427;QD=0.25;ReadPosRankSum=-6.505;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:133,26:159:71:71,0,1727 chrII 167996 . T G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.974;DP=177;Dels=0.00;FS=119.395;HaplotypeScore=3.3617;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=-2.036;QD=0.08;ReadPosRankSum=1.807;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,57:177:44:44,0,237 chrII 259764 . C T 2636 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=19.294;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=1.691;QD=31.01;ReadPosRankSum=0.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2669,241,0 chrII 263153 . C T 786 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=23.82;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:819,72,0 chrII 265382 . G T 2133 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=1;QD=31.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2166,196,0 chrII 415782 . C T 320.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.058;DP=190;Dels=0.01;FS=410.251;HaplotypeScore=28.3155;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-1.488;QD=1.68;ReadPosRankSum=-7.596;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:98,90:189:99:350,0,1328 chrII 698075 . G A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.909;DP=240;Dels=0.05;FS=484.963;HaplotypeScore=98.7754;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=0;MQRankSum=-0.886;QD=0.18;ReadPosRankSum=-0.623;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:99,129:228:73:73,0,2857 chrIII 160 . A C 245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;DP=387;Dels=0.03;FS=0.000;HaplotypeScore=271.6936;MLEAC=1;MLEAF=0.500;MQ=33.26;MQ0=15;MQRankSum=-3.220;QD=0.63;ReadPosRankSum=-1.956;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:293,81:374:99:275,0,3452 chrIII 274 . A C 312.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DP=335;Dels=0.01;FS=14.413;HaplotypeScore=458.1939;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=27;MQRankSum=2.764;QD=0.93;ReadPosRankSum=-1.261;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:258,72:330:99:342,0,1489 chrIII 42038 . G A 126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.542;DP=179;Dels=0.00;FS=433.434;HaplotypeScore=67.5418;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=0.755;QD=0.70;ReadPosRankSum=-9.943;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:104,74:179:99:156,0,623 chrIII 57071 . C A 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DP=178;Dels=0.00;FS=2.014;HaplotypeScore=16.3902;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=0.329;QD=0.90;ReadPosRankSum=-1.131;SB=-5.910e+02 GT:AD:DP:GQ:PL 0/1:87,90:178:99:190,0,766 chrIII 57085 . C A 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.185;DP=118;Dels=0.00;FS=138.868;HaplotypeScore=7.0777;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=1.151;QD=0.69;ReadPosRankSum=-6.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,21:118:99:111,0,433 chrIII 84421 . G A 105.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.464;DP=343;Dels=0.00;FS=176.354;HaplotypeScore=13.0605;MLEAC=2;MLEAF=1.00;MQ=5.29;MQ0=210;MQRankSum=-0.338;QD=0.31;ReadPosRankSum=-2.036;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:281,62:343:15:138,15,0 chrIII 143131 . T C 7432.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.4104;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=34.41;SB=-3.913e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:7432,587,0 chrIII 148615 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=30.91;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3771,340,0 chrIII 151628 . A T 162.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=47;Dels=0.00;FS=10.607;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.01;MQ0=24;MQRankSum=-1.800;QD=3.45;ReadPosRankSum=1.909;SB=0.145 GT:AD:DP:GQ:PL 0/1:26,21:47:21:192,0,21 chrIII 151645 . G A 98.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;DP=49;Dels=0.00;FS=13.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.23;MQ0=29;MQRankSum=-1.561;QD=2.00;ReadPosRankSum=1.387;SB=-2.819e+00 GT:AD:DP:GQ:PL 0/1:30,19:49:15:128,0,15 chrIII 151646 . T C 98.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=49;Dels=0.00;FS=13.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.23;MQ0=29;MQRankSum=-1.561;QD=2.00;ReadPosRankSum=1.387;SB=-2.819e+00 GT:AD:DP:GQ:PL 0/1:30,19:49:15:128,0,15 chrIII 151787 . A C 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.492;DP=241;Dels=0.00;FS=37.547;HaplotypeScore=6.5818;MLEAC=1;MLEAF=0.500;MQ=51.99;MQ0=0;MQRankSum=-8.098;QD=0.90;ReadPosRankSum=-1.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,30:241:99:246,0,6755 chrIII 151809 . T C 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DP=259;Dels=0.00;FS=29.590;HaplotypeScore=1.9164;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=1;MQRankSum=-8.035;QD=0.33;ReadPosRankSum=-2.735;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,28:259:99:116,0,7671 chrIII 162361 . T C 8056.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.18;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:8056,617,0 chrIII 162396 . G C 7683.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=35.73;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:7683,590,0 chrIII 162640 . T G 7837.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=1;QD=34.52;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7837,608,0 chrIII 162694 . G A 6261.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=32.61;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:6261,478,0 chrIII 163059 . T C 6319.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=32.41;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6319,479,0 chrIII 199081 . G A 1757 filter AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.70;MQ0=142;QD=6.81;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:69,189:258:99:1790,174,0 chrIII 231031 . C T 104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.609;DP=274;Dels=0.00;FS=527.794;HaplotypeScore=46.3585;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-0.561;QD=0.38;ReadPosRankSum=-8.961;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:195,78:274:99:134,0,2072 chrIII 277564 . G T 550.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920;DP=213;Dels=0.00;FS=402.833;HaplotypeScore=9.3659;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=2;MQRankSum=0.148;QD=2.58;ReadPosRankSum=-9.563;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,68:213:99:580,0,4155 chrIII 316617 . T G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=1;MQRankSum=-0.500;QD=0.74;ReadPosRankSum=0.020;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,7:39:59:59,0,634 chrIV 13937 . G A 452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.98;MQ0=163;MQRankSum=-0.109;QD=1.92;ReadPosRankSum=-0.960;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:126,108:235:99:482,0,590 chrIV 43901 . G A 298.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.718;DP=184;Dels=0.01;FS=432.946;HaplotypeScore=12.6511;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=-2.202;QD=1.62;ReadPosRankSum=-10.118;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:99,83:182:99:328,0,866 chrIV 169911 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;DP=274;Dels=0.04;FS=19.995;HaplotypeScore=110.3934;MLEAC=1;MLEAF=0.500;MQ=56.05;MQ0=0;MQRankSum=-1.582;QD=0.04;ReadPosRankSum=-1.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,67:264:41:41,0,1270 chrIV 169939 . G A 494.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.862;DP=194;Dels=0.01;FS=390.348;HaplotypeScore=142.9982;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=2.119;QD=2.55;ReadPosRankSum=-9.083;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:72,121:193:99:524,0,1177 chrIV 169943 . G A 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.561;DP=109;Dels=0.00;FS=206.475;HaplotypeScore=16.2665;MLEAC=1;MLEAF=0.500;MQ=52.67;MQ0=0;MQRankSum=-1.412;QD=0.57;ReadPosRankSum=-6.673;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:66,43:109:92:92,0,1359 chrIV 169954 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.949;DP=92;Dels=0.00;FS=124.439;HaplotypeScore=13.0733;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=-1.150;QD=0.52;ReadPosRankSum=-5.344;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,20:92:78:78,0,1700 chrIV 369290 . G A 139.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.401;DP=204;Dels=0.02;FS=478.331;HaplotypeScore=36.7604;MLEAC=1;MLEAF=0.500;MQ=55.19;MQ0=0;MQRankSum=3.003;QD=0.68;ReadPosRankSum=-8.172;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:112,87:199:99:169,0,1438 chrIV 587869 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.934;DP=163;Dels=0.00;FS=232.425;HaplotypeScore=39.7399;MLEAC=1;MLEAF=0.500;MQ=57.70;MQ0=0;MQRankSum=-0.088;QD=0.19;ReadPosRankSum=-6.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,32:163:61:61,0,652 chrIV 607060 . G A 208.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.650;DP=279;Dels=0.01;FS=331.646;HaplotypeScore=22.8868;MLEAC=1;MLEAF=0.500;MQ=58.52;MQ0=0;MQRankSum=1.700;QD=0.75;ReadPosRankSum=-7.635;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,99:276:99:238,0,1137 chrIV 655316 . A T 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050;DP=152;Dels=0.00;FS=186.039;HaplotypeScore=41.5995;MLEAC=1;MLEAF=0.500;MQ=54.79;MQ0=0;MQRankSum=-3.323;QD=2.01;ReadPosRankSum=-0.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,53:152:99:335,0,2791 chrIV 757631 . G C 2784 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=20;QD=20.93;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2817,265,0 chrIV 758310 . T C 1088 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=14;QD=11.96;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1121,117,0 chrIV 783598 . G A 8500.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=35.42;SB=-4.725e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:8500,629,0 chrIV 864219 . A G 6744.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.2857;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=33.89;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6744,515,0 chrIV 928579 . C G 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.205;DP=168;Dels=0.00;FS=307.465;HaplotypeScore=4.7320;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=1.508;QD=1.67;ReadPosRankSum=-7.616;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:126,41:168:99:311,0,3876 chrIV 987244 . G A 1215 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=15.02;MQ0=128;MQRankSum=-1.732;QD=6.36;ReadPosRankSum=1.017;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:98,93:191:77:1248,77,0 chrIV 1160352 . C T 143.26 filter AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=6.07;MQ0=258;QD=0.54;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:122,145:267:15:176,15,0 chrIV 1253397 . T C 9606.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=34.93;SB=-5.245e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:9606,722,0 chrIV 1361345 . T G 354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.769;DP=186;Dels=0.00;FS=343.378;HaplotypeScore=16.8476;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-0.306;QD=1.90;ReadPosRankSum=-3.638;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,73:186:99:384,0,3648 chrIV 1402305 . C T 9027.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=3.3409;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=34.32;SB=-4.853e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:9027,683,0 chrIV 1433710 . A T 7367.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=33.49;SB=-3.911e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:7367,569,0 chrIV 1524974 . A G 14032.01 filter AC=2;AF=1.00;AN=2;DP=443;Dels=0.00;FS=0.000;HaplotypeScore=11.1315;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=31.67;SB=-7.547e+03 GT:AD:DP:GQ:PL 1/1:0,443:443:99:14032,1113,0 chrIV 1525313 . T G 8630.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=3.6370;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=27.31;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:8630,767,0 chrIV 1525335 . C G 7449.01 SnpCluster AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=0;QD=24.50;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:7449,674,0 chrIV 1525340 . C A 6602.01 SnpCluster AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=24.73;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6602,602,0 chrIV 1525345 . C G 6410.01 SnpCluster AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=24.01;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6410,578,0 chrIV 1525351 . C G 5751.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=22.55;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5751,517,0 chrIV 1525357 . C G 5229.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=57.9905;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=21.61;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5229,472,0 chrIV 1525363 . C G 4691.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=59.8976;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=21.42;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4691,424,0 chrIV 1525465 . T G 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=338;Dels=0.00;FS=15.486;HaplotypeScore=92.9878;MLEAC=1;MLEAF=0.500;MQ=34.47;MQ0=34;MQRankSum=0.161;QD=1.00;ReadPosRankSum=3.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:303,35:338:99:367,0,4574 chrIX 25376 . C T 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;DP=278;Dels=0.00;FS=13.961;HaplotypeScore=6.3125;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-1.007;QD=0.26;ReadPosRankSum=-6.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,32:278:99:101,0,7917 chrIX 25418 . T C 3177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;DP=383;Dels=0.00;FS=18.943;HaplotypeScore=12.9104;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=1;MQRankSum=0.130;QD=8.30;ReadPosRankSum=3.240;SB=-1.174e+03 GT:AD:DP:GQ:PL 0/1:251,132:383:99:3207,0,7677 chrIX 25586 . T C 898.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DP=342;Dels=0.00;FS=13.209;HaplotypeScore=9.1979;MLEAC=1;MLEAF=0.500;MQ=46.89;MQ0=20;MQRankSum=-5.985;QD=2.63;ReadPosRankSum=-0.756;SB=-3.940e+02 GT:AD:DP:GQ:PL 0/1:258,82:341:99:928,0,6919 chrIX 76028 . G T 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850;DP=220;Dels=0.00;FS=228.652;HaplotypeScore=15.4842;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=1.105;QD=0.28;ReadPosRankSum=-5.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,46:220:91:91,0,2335 chrIX 204804 . C A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.920;DP=216;Dels=0.00;FS=74.413;HaplotypeScore=16.7785;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=2;MQRankSum=2.988;QD=0.17;ReadPosRankSum=2.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,33:216:67:67,0,2869 chrIX 241054 . C A 390.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.819;DP=216;Dels=0.00;FS=520.554;HaplotypeScore=9.4541;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=0.447;QD=1.81;ReadPosRankSum=-10.635;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:110,106:216:99:420,0,850 chrIX 241059 . G A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.146;DP=188;Dels=0.00;FS=341.987;HaplotypeScore=12.8657;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=0.960;QD=0.13;ReadPosRankSum=-8.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,58:188:55:55,0,1390 chrIX 285890 . T G 335.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.776;DP=213;Dels=0.00;FS=243.132;HaplotypeScore=9.0732;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-1.494;QD=1.57;ReadPosRankSum=-5.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,77:213:99:365,0,4052 chrIX 299898 . T G 1194.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.328;DP=229;Dels=0.00;FS=546.361;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=1;MQRankSum=-0.421;QD=5.21;ReadPosRankSum=-11.521;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:132,96:229:99:1224,0,4032 chrIX 299901 . C G 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.220;DP=177;Dels=0.00;FS=256.404;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=1;MQRankSum=1.268;QD=0.22;ReadPosRankSum=-8.354;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,41:177:69:69,0,4386 chrIX 305443 . C A 2798.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;DP=191;Dels=0.00;FS=0.549;HaplotypeScore=3.4369;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-1.088;QD=14.65;ReadPosRankSum=2.971;SB=-1.105e+03 GT:AD:DP:GQ:PL 0/1:103,88:191:99:2828,0,3154 chrIX 318694 . T A 8663.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=1;QD=35.50;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:8663,650,0 chrIX 339251 . G T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.702;DP=213;Dels=0.02;FS=452.190;HaplotypeScore=10.6218;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=3;MQRankSum=-2.045;QD=0.05;ReadPosRankSum=-9.558;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:147,61:208:41:41,0,1799 chrIX 383892 . G C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.618;DP=163;Dels=0.00;FS=318.206;HaplotypeScore=3.9146;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.903;QD=0.21;ReadPosRankSum=-8.748;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:127,36:163:65:65,0,3969 chrIX 432363 . G A 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;DP=302;Dels=0.00;FS=45.915;HaplotypeScore=4.7292;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=9;MQRankSum=-4.490;QD=0.47;ReadPosRankSum=-5.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,36:302:99:171,0,8813 chrIX 432374 . C T 599.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DP=298;Dels=0.00;FS=51.767;HaplotypeScore=7.4802;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=13;MQRankSum=-3.875;QD=2.01;ReadPosRankSum=-5.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,49:298:99:629,0,8094 chrIX 439840 . A G 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.434;DP=156;Dels=0.03;FS=11.372;HaplotypeScore=71.4868;MLEAC=1;MLEAF=0.500;MQ=45.34;MQ0=1;MQRankSum=-6.762;QD=1.25;ReadPosRankSum=-0.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,30:152:99:225,0,3687 chrIX 439851 . A G 294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;DP=139;Dels=0.04;FS=9.274;HaplotypeScore=57.1593;MLEAC=1;MLEAF=0.500;MQ=43.31;MQ0=1;MQRankSum=-6.560;QD=2.12;ReadPosRankSum=2.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,30:133:99:324,0,3115 chrIX 439886 . T G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.2939;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=0;MQRankSum=0.285;QD=0.61;ReadPosRankSum=0.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,9:79:78:78,0,1916 chrM 8373 . A T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.729;DP=9;Dels=0.00;FS=7.782;HaplotypeScore=12.9464;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;MQRankSum=-0.729;QD=1.55;ReadPosRankSum=2.219;SB=1.24 GT:AD:DP:GQ:PL 1/1:4,5:9:6:45,6,0 chrM 8384 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.307;DP=9;Dels=0.00;FS=7.782;HaplotypeScore=10.9497;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;MQRankSum=-0.729;QD=1.98;ReadPosRankSum=2.219;SB=1.24 GT:AD:DP:GQ:PL 1/1:4,5:9:6:49,6,0 chrM 20934 . T G 29737.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=996;DS;Dels=0.00;FS=0.000;HaplotypeScore=17.9602;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=1;MQRankSum=-0.392;QD=29.86;ReadPosRankSum=-1.008;SB=-1.155e+04 GT:AD:DP:GQ:PL 1/1:1,995:996:99:29737,2726,0 chrM 33743 . T A 6534.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.76;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6534,545,0 chrM 39517 . G T 28762.01 filter AC=2;AF=1.00;AN=2;DP=950;Dels=0.00;FS=0.000;HaplotypeScore=19.7783;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=1;QD=30.28;SB=-1.278e+04 GT:AD:DP:GQ:PL 1/1:0,948:950:99:28762,2323,0 chrM 56539 . T G 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.622;DP=261;Dels=0.00;FS=188.669;HaplotypeScore=19.6309;MLEAC=1;MLEAF=0.500;MQ=53.28;MQ0=0;MQRankSum=0.805;QD=0.23;ReadPosRankSum=-1.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,137:261:89:89,0,2996 chrM 82507 . T A 14127.01 filter AC=2;AF=1.00;AN=2;DP=513;Dels=0.00;FS=0.000;HaplotypeScore=14.4162;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=27.54;SB=-8.438e+03 GT:AD:DP:GQ:PL 1/1:0,511:513:99:14127,1104,0 chrV 48384 . T C 9460.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.8412;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=32.07;SB=-3.936e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:9460,761,0 chrV 100596 . C A 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.033;DP=182;Dels=0.01;FS=321.460;HaplotypeScore=25.6590;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=0.968;QD=0.32;ReadPosRankSum=-9.597;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:120,60:181:88:88,0,271 chrV 154531 . T A 7008.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.0595;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=32.90;SB=-3.702e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:7008,530,0 chrV 243686 . G A 234.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.473;DP=274;Dels=0.01;FS=650.291;HaplotypeScore=20.9145;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=1;MQRankSum=-0.460;QD=0.85;ReadPosRankSum=-10.988;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:182,90:272:99:264,0,1070 chrV 352394 . A G 6386.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=32.25;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6386,518,0 chrV 517529 . T C 9751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.388;QD=34.70;ReadPosRankSum=1.399;SB=-4.713e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:9751,737,0 chrV 522998 . C T 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.061;DP=261;Dels=0.00;FS=323.979;HaplotypeScore=150.8470;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=1;MQRankSum=2.095;QD=0.57;ReadPosRankSum=-7.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,86:260:99:178,0,2445 chrVI 12416 . T A 6014.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.069;DP=638;Dels=0.00;FS=22.122;HaplotypeScore=13.5466;MLEAC=1;MLEAF=0.500;MQ=43.49;MQ0=36;MQRankSum=-4.808;QD=9.43;ReadPosRankSum=-0.344;SB=-3.449e+03 GT:AD:DP:GQ:PL 0/1:372,265:638:99:6014,0,11066 chrVI 97634 . T A 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.389;DP=307;Dels=0.01;FS=178.877;HaplotypeScore=37.0944;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=0.695;QD=0.56;ReadPosRankSum=-6.851;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,79:304:99:202,0,2277 chrVI 97637 . C A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.377;DP=310;Dels=0.00;FS=200.709;HaplotypeScore=46.3518;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-0.604;QD=0.06;ReadPosRankSum=-7.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,83:310:48:48,0,2209 chrVI 104573 . T A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DP=199;Dels=0.00;FS=229.908;HaplotypeScore=18.2660;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=2.169;QD=0.09;ReadPosRankSum=-7.122;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:87,112:199:47:47,0,1649 chrVI 104577 . T A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;DP=200;Dels=0.00;FS=307.934;HaplotypeScore=18.2660;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=1.441;QD=0.21;ReadPosRankSum=-4.431;SB=-8.702e+01 GT:AD:DP:GQ:PL 0/1:83,117:200:71:71,0,1534 chrVI 227503 . A T 487.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.464;DP=206;Dels=0.00;FS=373.654;HaplotypeScore=54.7697;MLEAC=1;MLEAF=0.500;MQ=54.68;MQ0=1;MQRankSum=-2.955;QD=2.36;ReadPosRankSum=-6.973;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:121,84:205:99:517,0,680 chrVII 104051 . G T 513.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.509;DP=215;Dels=0.00;FS=390.430;HaplotypeScore=13.1326;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-2.024;QD=2.39;ReadPosRankSum=-9.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,64:215:99:543,0,4458 chrVII 167640 . G A 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.702;DP=194;Dels=0.00;FS=318.143;HaplotypeScore=4.8639;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=0.749;QD=0.82;ReadPosRankSum=-7.426;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:144,50:194:99:190,0,319 chrVII 267395 . T G 383.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.418;DP=221;Dels=0.00;FS=328.167;HaplotypeScore=8.7919;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-1.824;QD=1.73;ReadPosRankSum=-8.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,62:221:99:413,0,5324 chrVII 353840 . C T 3974.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=231;Dels=0.00;FS=16.068;HaplotypeScore=1.7313;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.772;QD=17.20;ReadPosRankSum=0.632;SB=-2.000e+03 GT:AD:DP:GQ:PL 0/1:105,126:231:99:3974,0,3152 chrVII 386978 . C G 280 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=1;QD=1.50;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:39:313,39,0 chrVII 386979 . G C 291 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=1;QD=1.57;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:39:324,39,0 chrVII 400572 . A T 546.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.605;DP=224;Dels=0.00;FS=599.407;HaplotypeScore=8.5289;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=2.185;QD=2.44;ReadPosRankSum=-11.571;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:138,86:224:99:576,0,539 chrVII 401674 . C A 5520.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=1;QD=31.91;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5520,460,0 chrVII 401698 . T A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=3;QD=29.50;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3865,367,0 chrVII 404935 . C G 90.26 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=23;QD=0.86;SB=-3.003e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:15:123,15,0 chrVII 404936 . G C 63.51 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=23;QD=0.60;SB=-3.315e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:12:96,12,0 chrVII 530010 . C A 251.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.681;DP=470;Dels=0.00;FS=0.451;HaplotypeScore=415.1679;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=0;MQRankSum=-6.377;QD=0.53;ReadPosRankSum=0.957;SB=-5.350e+02 GT:AD:DP:GQ:PL 0/1:391,78:469:99:281,0,8228 chrVII 530016 . A C 1436.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.522;DP=484;Dels=0.00;FS=71.269;HaplotypeScore=214.3542;MLEAC=1;MLEAF=0.500;MQ=42.21;MQ0=0;MQRankSum=-2.403;QD=2.97;ReadPosRankSum=-5.091;SB=-1.365e+03 GT:AD:DP:GQ:PL 0/1:312,170:483:99:1466,0,7188 chrVII 530022 . C A 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.460;DP=501;Dels=0.00;FS=11.454;HaplotypeScore=192.0917;MLEAC=1;MLEAF=0.500;MQ=43.14;MQ0=0;MQRankSum=-8.560;QD=0.32;ReadPosRankSum=5.901;SB=-3.600e+02 GT:AD:DP:GQ:PL 0/1:418,82:501:99:189,0,9119 chrVII 530028 . C A 155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.312;DP=501;Dels=0.00;FS=15.352;HaplotypeScore=182.6065;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=0;MQRankSum=-8.171;QD=0.31;ReadPosRankSum=6.475;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:418,82:500:99:185,0,9161 chrVII 530034 . A C 3688.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;DP=487;Dels=0.00;FS=135.127;HaplotypeScore=112.1039;MLEAC=1;MLEAF=0.500;MQ=42.41;MQ0=0;MQRankSum=3.131;QD=7.57;ReadPosRankSum=-2.827;SB=-1.673e+03 GT:AD:DP:GQ:PL 0/1:262,225:487:99:3688,0,4783 chrVII 530076 . T A 976.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;DP=414;Dels=0.00;FS=229.952;HaplotypeScore=204.2421;MLEAC=1;MLEAF=0.500;MQ=46.27;MQ0=0;MQRankSum=-9.270;QD=2.36;ReadPosRankSum=-8.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:293,77:414:99:1006,0,7189 chrVII 530079 . C A 1537.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;DP=415;Dels=0.00;FS=145.860;HaplotypeScore=140.3060;MLEAC=1;MLEAF=0.500;MQ=46.60;MQ0=0;MQRankSum=-11.466;QD=3.70;ReadPosRankSum=-12.159;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/1:295,119:415:99:1567,0,7051 chrVII 530082 . T A 960.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DP=414;Dels=0.00;FS=217.132;HaplotypeScore=98.9603;MLEAC=1;MLEAF=0.500;MQ=46.92;MQ0=0;MQRankSum=-10.429;QD=2.32;ReadPosRankSum=-10.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,77:414:99:990,0,7523 chrVII 530093 . A C 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;DP=366;Dels=0.00;FS=129.460;HaplotypeScore=20.9835;MLEAC=1;MLEAF=0.500;MQ=51.56;MQ0=0;MQRankSum=-8.666;QD=0.36;ReadPosRankSum=-9.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,46:366:99:162,0,8488 chrVII 848557 . G A 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;DP=212;Dels=0.01;FS=159.153;HaplotypeScore=23.6977;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-1.597;QD=1.33;ReadPosRankSum=-8.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,78:209:99:313,0,790 chrVII 919959 . G T 1599.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.440;DP=172;Dels=0.00;FS=212.962;HaplotypeScore=52.1779;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=0;MQRankSum=-5.150;QD=9.30;ReadPosRankSum=-1.901;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,100:172:99:1629,0,1709 chrVII 919983 . C A 344.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.294;DP=154;Dels=0.00;FS=115.336;HaplotypeScore=60.3799;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=0;MQRankSum=-3.702;QD=2.23;ReadPosRankSum=-4.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,62:154:99:374,0,2314 chrVII 971831 . C T 4035.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DP=253;Dels=0.00;FS=2.151;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=1.029;QD=15.95;ReadPosRankSum=0.693;SB=-2.144e+03 GT:AD:DP:GQ:PL 0/1:111,142:253:99:4035,0,3205 chrVII 1011827 . A T 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.740;DP=229;Dels=0.00;FS=230.268;HaplotypeScore=90.6667;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-1.148;QD=0.19;ReadPosRankSum=-8.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,80:229:74:74,0,1823 chrVII 1051846 . C T 227.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.217;DP=230;Dels=0.01;FS=264.944;HaplotypeScore=22.0357;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=1.231;QD=0.99;ReadPosRankSum=-7.966;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,96:228:99:257,0,1577 chrVII 1084067 . T G 245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.150;DP=327;Dels=0.00;FS=538.871;HaplotypeScore=20.4871;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-1.827;QD=0.75;ReadPosRankSum=-3.784;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,120:327:99:275,0,6937 chrVIII 8 . A C 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=147.7883;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=9;MQRankSum=1.309;QD=0.38;ReadPosRankSum=1.292;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:94,7:101:68:68,0,140 chrVIII 1744 . A C 714.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DP=283;Dels=0.00;FS=31.411;HaplotypeScore=6.9312;MLEAC=1;MLEAF=0.500;MQ=31.61;MQ0=61;MQRankSum=-5.718;QD=2.52;ReadPosRankSum=1.936;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:208,74:283:99:744,0,4172 chrVIII 1748 . T C 757.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;DP=289;Dels=0.00;FS=26.464;HaplotypeScore=6.9312;MLEAC=1;MLEAF=0.500;MQ=30.62;MQ0=65;MQRankSum=-4.347;QD=2.62;ReadPosRankSum=2.328;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:212,77:289:99:787,0,4130 chrVIII 1816 . C A 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=237;Dels=0.00;FS=13.546;HaplotypeScore=3.6132;MLEAC=1;MLEAF=0.500;MQ=36.81;MQ0=37;MQRankSum=-4.051;QD=0.52;ReadPosRankSum=-2.189;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,33:237:99:153,0,4184 chrVIII 1846 . A G 800.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.831;DP=209;Dels=0.00;FS=1.926;HaplotypeScore=9.1556;MLEAC=1;MLEAF=0.500;MQ=41.82;MQ0=6;MQRankSum=-4.384;QD=3.83;ReadPosRankSum=-7.375;SB=-6.780e+02 GT:AD:DP:GQ:PL 0/1:139,68:209:99:830,0,3434 chrVIII 5556 . C T 612.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170;DP=460;Dels=0.00;FS=2.036;HaplotypeScore=5.2595;MLEAC=1;MLEAF=0.500;MQ=43.95;MQ0=25;MQRankSum=-12.189;QD=1.33;ReadPosRankSum=4.200;SB=-4.040e+02 GT:AD:DP:GQ:PL 0/1:346,114:460:99:642,0,10062 chrVIII 81881 . G A 579.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.216;DP=199;Dels=0.01;FS=508.235;HaplotypeScore=11.0006;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-0.223;QD=2.91;ReadPosRankSum=-11.079;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:120,78:198:99:609,0,468 chrVIII 81886 . G A 299.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.609;DP=177;Dels=0.00;FS=410.234;HaplotypeScore=11.8028;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=1.387;QD=1.69;ReadPosRankSum=-9.822;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:121,55:177:99:329,0,568 chrVIII 159794 . T G 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.217;DP=229;Dels=0.00;FS=220.084;HaplotypeScore=28.9384;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=-0.104;QD=0.50;ReadPosRankSum=-4.002;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,70:229:99:145,0,4575 chrVIII 161791 . G T 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.745;DP=149;Dels=0.00;FS=158.475;HaplotypeScore=1.9970;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=-0.339;QD=1.70;ReadPosRankSum=-6.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,46:149:99:283,0,3091 chrVIII 216123 . C T 4842.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.610;DP=828;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=13.31;MQ0=685;MQRankSum=-0.885;QD=5.85;ReadPosRankSum=-0.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:634,192:827:99:4842,355,0 chrVIII 236987 . G A 631.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.930;DP=182;Dels=0.00;FS=504.739;HaplotypeScore=2.0899;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=2.068;QD=3.47;ReadPosRankSum=-9.349;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:80,102:182:99:661,0,753 chrVIII 236993 . T A 424.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.965;DP=177;Dels=0.00;FS=501.042;HaplotypeScore=2.5114;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=3.434;QD=2.40;ReadPosRankSum=-10.361;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:88,89:177:99:454,0,1033 chrVIII 340348 . G T 421.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470;DP=132;Dels=0.00;FS=179.756;HaplotypeScore=34.5097;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=-2.227;QD=3.19;ReadPosRankSum=-4.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,64:132:99:451,0,1800 chrVIII 340359 . A T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.737;DP=139;Dels=0.00;FS=142.246;HaplotypeScore=51.7392;MLEAC=1;MLEAF=0.500;MQ=55.64;MQ0=0;MQRankSum=-2.391;QD=0.78;ReadPosRankSum=-3.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,50:139:99:139,0,2390 chrVIII 340364 . G T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.031;DP=119;Dels=0.00;FS=101.063;HaplotypeScore=26.3485;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=-2.933;QD=0.66;ReadPosRankSum=-5.755;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,35:119:99:108,0,2466 chrVIII 387115 . C T 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.436;DP=206;Dels=0.00;FS=291.919;HaplotypeScore=66.6404;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=0.226;QD=0.20;ReadPosRankSum=-7.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,65:206:71:71,0,1728 chrVIII 396971 . G A 336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.142;DP=149;Dels=0.00;FS=242.954;HaplotypeScore=18.4678;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.992;QD=2.26;ReadPosRankSum=-3.160;SB=-6.086e-03 GT:AD:DP:GQ:PL 0/1:108,41:149:99:366,0,837 chrVIII 417054 . G A 8705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.6938;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.754;QD=35.10;ReadPosRankSum=-0.363;SB=-4.019e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:8705,656,0 chrVIII 434227 . C A 3535.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DP=211;Dels=0.00;FS=0.502;HaplotypeScore=11.5016;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=0.037;QD=16.75;ReadPosRankSum=-0.467;SB=-1.819e+03 GT:AD:DP:GQ:PL 0/1:98,113:211:99:3535,0,2855 chrVIII 524447 . C G 2548.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=191;Dels=0.00;FS=1.797;HaplotypeScore=2.9853;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=-0.130;QD=13.34;ReadPosRankSum=0.088;SB=-1.180e+03 GT:AD:DP:GQ:PL 0/1:98,93:191:99:2578,0,3076 chrVIII 561786 . G C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=5.27;MQ0=302;MQRankSum=-0.185;QD=0.04;ReadPosRankSum=0.555;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:311,3:314:43:43,0,176 chrVIII 561809 . A G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=6.20;MQ0=289;MQRankSum=1.371;QD=0.23;ReadPosRankSum=-0.065;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:298,6:304:99:101,0,204 chrVIII 561837 . A G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.57;MQ0=284;MQRankSum=-0.289;QD=0.04;ReadPosRankSum=0.600;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:292,4:296:40:40,0,207 chrVIII 561883 . G C 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.49;MQ0=306;MQRankSum=-0.718;QD=0.56;ReadPosRankSum=-0.718;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:310,15:325:99:211,0,185 chrVIII 562354 . C T 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=2.9296;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=222;MQRankSum=-1.133;QD=0.57;ReadPosRankSum=-2.157;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:333,79:412:99:263,0,4502 chrVIII 562374 . G A 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.189;DP=462;Dels=0.00;FS=34.752;HaplotypeScore=3.7106;MLEAC=1;MLEAF=0.500;MQ=22.05;MQ0=222;MQRankSum=2.055;QD=0.59;ReadPosRankSum=-3.667;SB=-2.900e+02 GT:AD:DP:GQ:PL 0/1:386,76:462:99:304,0,5277 chrVIII 562440 . A G 1055.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;DP=538;Dels=0.00;FS=1.163;HaplotypeScore=5.3911;MLEAC=1;MLEAF=0.500;MQ=32.73;MQ0=100;MQRankSum=-0.908;QD=1.96;ReadPosRankSum=2.384;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:405,133:538:99:1085,0,8930 chrVIII 562443 . A G 1041.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;DP=539;Dels=0.00;FS=1.190;HaplotypeScore=11.2797;MLEAC=1;MLEAF=0.500;MQ=33.02;MQ0=96;MQRankSum=-0.755;QD=1.93;ReadPosRankSum=2.076;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:409,130:539:99:1071,0,9113 chrVIII 562486 . T G 837.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;DP=537;Dels=0.04;FS=1.857;HaplotypeScore=421.5183;MLEAC=1;MLEAF=0.500;MQ=34.03;MQ0=26;MQRankSum=-1.170;QD=1.56;ReadPosRankSum=-2.790;SB=-6.590e+02 GT:AD:DP:GQ:PL 0/1:376,135:513:99:867,0,6722 chrVIII 562626 . G T 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=104.4233;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=21;MQRankSum=0.560;QD=0.75;ReadPosRankSum=-0.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,24:161:99:151,0,1302 chrVIII 562637 . T G 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;DP=117;Dels=0.04;FS=0.000;HaplotypeScore=89.8007;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=10;MQRankSum=2.078;QD=2.71;ReadPosRankSum=2.025;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,30:112:99:347,0,994 chrVIII 562639 . T G 254.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=61.1884;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=9;MQRankSum=0.388;QD=2.40;ReadPosRankSum=1.360;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,22:106:99:284,0,1117 chrX 97478 . G A 9245.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=36.40;SB=-3.640e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:9245,695,0 chrX 99534 . C T 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.086;DP=155;Dels=0.01;FS=114.276;HaplotypeScore=35.1276;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-2.146;QD=0.37;ReadPosRankSum=-5.079;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:134,17:153:87:87,0,405 chrX 136931 . G A 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.068;DP=291;Dels=0.01;FS=661.380;HaplotypeScore=18.3108;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=0.411;QD=0.55;ReadPosRankSum=-12.765;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:181,108:289:99:190,0,1603 chrX 199170 . A C 3201 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=7;QD=28.33;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3234,288,0 chrX 200219 . A G 2739 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.160;DP=141;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=26;MQRankSum=-1.732;QD=19.43;ReadPosRankSum=0.286;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2772,225,0 chrX 265891 . G T 82.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420;DP=241;Dels=0.05;FS=369.575;HaplotypeScore=36.8500;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=1;MQRankSum=0.163;QD=0.34;ReadPosRankSum=-7.067;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:176,47:229:99:112,0,1421 chrX 358232 . G T 189.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.747;DP=142;Dels=0.01;FS=320.812;HaplotypeScore=10.6594;MLEAC=1;MLEAF=0.500;MQ=57.84;MQ0=0;MQRankSum=-0.194;QD=1.33;ReadPosRankSum=-8.710;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:77,62:141:99:219,0,441 chrX 393843 . T A 194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.974;DP=199;Dels=0.01;FS=299.298;HaplotypeScore=8.6856;MLEAC=1;MLEAF=0.500;MQ=56.76;MQ0=0;MQRankSum=1.972;QD=0.97;ReadPosRankSum=-7.532;SB=0.101 GT:AD:DP:GQ:PL 0/1:147,50:197:99:224,0,1011 chrX 393850 . T A 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.507;DP=208;Dels=0.00;FS=275.774;HaplotypeScore=16.4543;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-0.063;QD=0.42;ReadPosRankSum=-7.109;SB=0.325 GT:AD:DP:GQ:PL 0/1:163,45:208:99:118,0,1318 chrX 424928 . G T 200.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.884;DP=163;Dels=0.03;FS=424.166;HaplotypeScore=17.8941;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=1.254;QD=1.23;ReadPosRankSum=-7.716;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:89,69:158:99:230,0,991 chrX 424930 . A T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.423;DP=166;Dels=0.02;FS=430.397;HaplotypeScore=17.8941;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=0.098;QD=0.06;ReadPosRankSum=-7.767;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:93,70:163:40:40,0,1325 chrX 521350 . G T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.271;DP=159;Dels=0.00;FS=246.573;HaplotypeScore=8.6382;MLEAC=1;MLEAF=0.500;MQ=57.09;MQ0=0;MQRankSum=-0.154;QD=0.66;ReadPosRankSum=-7.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,41:159:99:135,0,3708 chrX 523921 . G A 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.329;DP=229;Dels=0.00;FS=263.165;HaplotypeScore=6.6264;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=-1.124;QD=0.64;ReadPosRankSum=-6.946;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:181,47:228:99:176,0,1276 chrX 580265 . G T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.174;DP=259;Dels=0.00;FS=426.481;HaplotypeScore=3.8886;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=0.137;QD=0.15;ReadPosRankSum=-7.633;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:214,44:258:69:69,0,3430 chrX 714331 . T C 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.024;DP=242;Dels=0.00;FS=32.099;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=4.88;MQ0=195;MQRankSum=2.589;QD=0.15;ReadPosRankSum=-1.632;SB=1.24 GT:AD:DP:GQ:PL 1/1:238,3:242:6:67,6,0 chrX 714763 . T G 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.650;DP=301;Dels=0.00;FS=411.935;HaplotypeScore=20.4265;MLEAC=1;MLEAF=0.500;MQ=52.47;MQ0=0;MQRankSum=-0.818;QD=1.06;ReadPosRankSum=-5.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,98:301:99:348,0,6461 chrX 715050 . G A 584.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DP=314;Dels=0.00;FS=54.354;HaplotypeScore=17.9273;MLEAC=1;MLEAF=0.500;MQ=44.25;MQ0=0;MQRankSum=-8.118;QD=1.86;ReadPosRankSum=-2.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:261,53:314:99:614,0,8032 chrX 715054 . G T 820.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;DP=317;Dels=0.00;FS=64.266;HaplotypeScore=16.2749;MLEAC=1;MLEAF=0.500;MQ=43.25;MQ0=0;MQRankSum=-6.868;QD=2.59;ReadPosRankSum=-1.919;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,63:317:99:850,0,7307 chrX 715068 . G A 1472.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DP=338;Dels=0.00;FS=74.376;HaplotypeScore=18.4938;MLEAC=1;MLEAF=0.500;MQ=41.40;MQ0=0;MQRankSum=-3.495;QD=4.36;ReadPosRankSum=1.653;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:240,97:338:99:1502,0,6929 chrX 715072 . G T 1924.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DP=327;Dels=0.00;FS=72.393;HaplotypeScore=20.3832;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=1;MQRankSum=-2.180;QD=5.88;ReadPosRankSum=1.153;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:219,108:327:99:1954,0,5810 chrX 715081 . T G 2039.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;DP=321;Dels=0.00;FS=69.190;HaplotypeScore=18.6816;MLEAC=1;MLEAF=0.500;MQ=38.33;MQ0=6;MQRankSum=-2.687;QD=6.35;ReadPosRankSum=3.558;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:202,117:321:99:2069,0,5408 chrX 715087 . A G 2053.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;DP=324;Dels=0.00;FS=51.804;HaplotypeScore=17.0891;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=18;MQRankSum=-1.937;QD=6.34;ReadPosRankSum=3.944;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:198,126:324:99:2083,0,4949 chrX 715095 . G A 3771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.632;DP=313;Dels=0.00;FS=47.469;HaplotypeScore=10.7393;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=36;MQRankSum=0.012;QD=12.05;ReadPosRankSum=-1.546;SB=-1.472e+03 GT:AD:DP:GQ:PL 0/1:158,154:313:99:3771,0,2406 chrX 715099 . G T 3376.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=306;Dels=0.00;FS=38.021;HaplotypeScore=13.6971;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=44;MQRankSum=0.070;QD=11.03;ReadPosRankSum=-0.424;SB=-1.247e+03 GT:AD:DP:GQ:PL 0/1:168,138:306:99:3376,0,2401 chrX 715108 . A T 3315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;DP=332;Dels=0.01;FS=15.847;HaplotypeScore=27.3529;MLEAC=1;MLEAF=0.500;MQ=29.83;MQ0=59;MQRankSum=-0.296;QD=9.98;ReadPosRankSum=0.725;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:194,133:330:99:3315,0,2382 chrX 715114 . G A 3104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;DP=345;Dels=0.01;FS=8.759;HaplotypeScore=28.3761;MLEAC=1;MLEAF=0.500;MQ=29.09;MQ0=70;MQRankSum=0.205;QD=9.00;ReadPosRankSum=2.060;SB=-1.014e+03 GT:AD:DP:GQ:PL 0/1:216,127:343:99:3134,0,2434 chrX 715122 . G A 2900.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;DP=383;Dels=0.00;FS=1.018;HaplotypeScore=32.7470;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=88;MQRankSum=3.291;QD=7.57;ReadPosRankSum=2.976;SB=-8.460e+02 GT:AD:DP:GQ:PL 0/1:259,123:383:99:2930,0,2648 chrX 715126 . A T 2491.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.133;DP=346;Dels=0.00;FS=14.060;HaplotypeScore=33.9362;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=88;MQRankSum=3.882;QD=7.20;ReadPosRankSum=2.142;SB=-4.590e+02 GT:AD:DP:GQ:PL 0/1:234,105:346:99:2521,0,1939 chrX 715129 . C A 2623.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.917;DP=348;Dels=0.00;FS=20.400;HaplotypeScore=38.3991;MLEAC=1;MLEAF=0.500;MQ=26.37;MQ0=90;MQRankSum=3.103;QD=7.54;ReadPosRankSum=0.864;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:234,113:348:99:2653,0,1832 chrX 715132 . T A 2403.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;DP=357;Dels=0.00;FS=13.677;HaplotypeScore=55.8991;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=95;MQRankSum=4.410;QD=6.73;ReadPosRankSum=2.078;SB=-4.410e+02 GT:AD:DP:GQ:PL 0/1:255,102:357:99:2433,0,1962 chrX 715141 . A G 1783.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;DP=385;Dels=0.00;FS=1.124;HaplotypeScore=63.5243;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=112;MQRankSum=2.488;QD=4.63;ReadPosRankSum=-1.058;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:289,93:385:99:1813,0,2165 chrX 715168 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;DP=358;Dels=0.00;FS=64.543;HaplotypeScore=15.3441;MLEAC=1;MLEAF=0.500;MQ=15.90;MQ0=148;MQRankSum=4.600;QD=0.20;ReadPosRankSum=2.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:335,22:358:99:101,0,1509 chrX 715176 . G A 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DP=360;Dels=0.00;FS=74.763;HaplotypeScore=17.1824;MLEAC=1;MLEAF=0.500;MQ=10.61;MQ0=162;MQRankSum=6.251;QD=0.41;ReadPosRankSum=3.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:339,21:360:99:176,0,721 chrX 715180 . A T 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.330;DP=353;Dels=0.00;FS=78.685;HaplotypeScore=24.9295;MLEAC=1;MLEAF=0.500;MQ=10.26;MQ0=159;MQRankSum=6.583;QD=0.40;ReadPosRankSum=3.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:330,21:352:99:170,0,553 chrX 715183 . C A 145.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DP=352;Dels=0.00;FS=78.685;HaplotypeScore=22.9734;MLEAC=1;MLEAF=0.500;MQ=10.16;MQ0=159;MQRankSum=6.466;QD=0.41;ReadPosRankSum=3.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:329,22:351:99:175,0,550 chrX 715186 . T A 145.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DP=369;Dels=0.00;FS=62.561;HaplotypeScore=34.8224;MLEAC=1;MLEAF=0.500;MQ=9.92;MQ0=176;MQRankSum=5.857;QD=0.39;ReadPosRankSum=1.918;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:336,29:368:99:175,0,553 chrX 715195 . A G 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DP=371;Dels=0.00;FS=23.086;HaplotypeScore=39.6804;MLEAC=1;MLEAF=0.500;MQ=9.69;MQ0=170;MQRankSum=3.405;QD=0.24;ReadPosRankSum=-0.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:346,24:371:99:120,0,584 chrX 731863 . C T 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.54;MQ0=170;QD=0.17;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:89,84:173:6:60,6,0 chrX 737991 . A G 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;DP=284;Dels=0.00;FS=47.093;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=5.631;QD=0.90;ReadPosRankSum=-5.579;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:249,35:284:99:287,0,6230 chrX 738075 . G T 3661.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.619;DP=348;Dels=0.00;FS=4.986;HaplotypeScore=2.5714;MLEAC=1;MLEAF=0.500;MQ=40.78;MQ0=9;MQRankSum=-1.999;QD=10.52;ReadPosRankSum=-1.253;SB=-1.100e+03 GT:AD:DP:GQ:PL 0/1:190,158:348:99:3661,0,5278 chrX 740238 . T C 1189 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=31;QD=16.99;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1222,111,0 chrX 745741 . T G 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=56.8475;MLEAC=1;MLEAF=0.500;MQ=36.31;MQ0=11;MQRankSum=-1.930;QD=0.91;ReadPosRankSum=-0.905;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,16:87:99:111,0,1368 chrXI 67798 . G T 244.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.892;DP=204;Dels=0.00;FS=508.631;HaplotypeScore=2.6946;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=0;MQRankSum=-0.241;QD=1.20;ReadPosRankSum=-10.879;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:148,56:204:99:274,0,753 chrXI 217124 . G A 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.259;DP=271;Dels=0.00;FS=409.017;HaplotypeScore=10.8114;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=1.033;QD=0.85;ReadPosRankSum=-9.209;SB=-5.149e-03 GT:AD:DP:GQ:PL 0/1:204,66:270:99:261,0,1322 chrXI 277055 . G T 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.276;DP=200;Dels=0.00;FS=207.868;HaplotypeScore=21.7737;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=0.257;QD=0.37;ReadPosRankSum=-4.286;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,53:200:99:103,0,2665 chrXI 385128 . G T 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.339;DP=232;Dels=0.00;FS=611.773;HaplotypeScore=4.6954;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=1.150;QD=0.43;ReadPosRankSum=-12.230;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:154,78:232:99:130,0,685 chrXI 385129 . A T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.506;DP=226;Dels=0.00;FS=573.284;HaplotypeScore=5.6938;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-0.128;QD=0.11;ReadPosRankSum=-11.870;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:154,72:226:55:55,0,781 chrXI 385133 . C T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.671;DP=215;Dels=0.00;FS=455.708;HaplotypeScore=5.6938;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-0.274;QD=0.53;ReadPosRankSum=-10.307;SB=1.11 GT:AD:DP:GQ:PL 0/1:159,56:215:99:145,0,912 chrXI 524076 . C T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.048;DP=342;Dels=0.00;FS=662.621;HaplotypeScore=30.8099;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=0.713;QD=0.13;ReadPosRankSum=-9.664;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:272,70:342:73:73,0,2689 chrXI 666757 . G T 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.606;DP=318;Dels=0.01;FS=2.016;HaplotypeScore=343.2071;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=18;MQRankSum=5.643;QD=0.43;ReadPosRankSum=-1.339;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:273,41:314:99:166,0,1345 chrXI 666812 . T G 194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;DP=99;Dels=0.03;FS=0.000;HaplotypeScore=57.9111;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=5;MQRankSum=0.850;QD=1.96;ReadPosRankSum=0.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,17:96:99:224,0,896 chrXI 666814 . T G 242.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=29.0316;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=3;MQRankSum=1.670;QD=3.14;ReadPosRankSum=2.920;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,21:77:99:272,0,914 chrXII 161 . T C 704.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.373;DP=561;Dels=0.00;FS=6.001;HaplotypeScore=17.8752;MLEAC=1;MLEAF=0.500;MQ=41.42;MQ0=52;MQRankSum=-7.857;QD=1.25;ReadPosRankSum=0.458;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:481,79:561:99:734,0,10513 chrXII 5741 . T C 615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.102;DP=456;Dels=0.00;FS=0.000;HaplotypeScore=4.6173;MLEAC=1;MLEAF=0.500;MQ=45.00;MQ0=1;MQRankSum=-12.198;QD=1.35;ReadPosRankSum=-2.480;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:387,69:456:99:645,0,11822 chrXII 5757 . A T 349.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DP=481;Dels=0.00;FS=15.495;HaplotypeScore=14.7689;MLEAC=1;MLEAF=0.500;MQ=46.26;MQ0=0;MQRankSum=-11.930;QD=0.73;ReadPosRankSum=2.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:423,58:481:99:379,0,12416 chrXII 5823 . A G 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.174;DP=321;Dels=0.00;FS=128.859;HaplotypeScore=5.7635;MLEAC=1;MLEAF=0.500;MQ=48.35;MQ0=0;MQRankSum=-10.232;QD=0.99;ReadPosRankSum=-7.753;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:280,40:321:99:347,0,8312 chrXII 10659 . G T 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.97;MQ0=196;MQRankSum=-1.378;QD=0.65;ReadPosRankSum=0.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,7:208:99:165,0,164 chrXII 10965 . T C 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=14.01;MQ0=172;MQRankSum=-0.631;QD=0.60;ReadPosRankSum=1.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,11:222:99:163,0,1119 chrXII 11143 . T A 445.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.137;DP=359;Dels=0.00;FS=11.115;HaplotypeScore=2.9952;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=235;MQRankSum=-0.042;QD=1.24;ReadPosRankSum=0.702;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:321,38:359:99:475,0,2641 chrXII 48880 . G A 655.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-13.697;DP=345;Dels=0.01;FS=935.437;HaplotypeScore=16.6929;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=1;MQRankSum=1.691;QD=1.90;ReadPosRankSum=-10.690;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:163,180:343:99:685,0,1373 chrXII 48888 . G A 158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-14.448;DP=309;Dels=0.00;FS=827.251;HaplotypeScore=37.8096;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=1;MQRankSum=0.064;QD=0.51;ReadPosRankSum=-13.929;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:178,130:308:99:188,0,2077 chrXII 86742 . C A 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.484;DP=308;Dels=0.02;FS=290.716;HaplotypeScore=114.5788;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=1.454;QD=0.06;ReadPosRankSum=-10.065;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,79:303:49:49,0,2489 chrXII 220717 . G A 1601 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=1;QD=32.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1634,147,0 chrXII 234122 . G A 2092.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;DP=164;Dels=0.00;FS=17.666;HaplotypeScore=5.3499;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-1.931;QD=12.76;ReadPosRankSum=0.325;SB=-7.180e+02 GT:AD:DP:GQ:PL 0/1:90,73:164:99:2122,0,2971 chrXII 251213 . T A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.509;DP=251;Dels=0.01;FS=355.280;HaplotypeScore=25.8167;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=1.668;QD=0.16;ReadPosRankSum=-10.203;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,70:248:71:71,0,1389 chrXII 264103 . C T 59.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.376;DP=137;Dels=0.00;FS=256.408;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=53.61;MQ0=1;MQRankSum=2.207;QD=0.43;ReadPosRankSum=-6.986;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:112,25:137:89:89,0,472 chrXII 291384 . A G 7369.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=31.76;SB=-3.354e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7369,581,0 chrXII 291386 . A G 7483.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=32.96;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7483,584,0 chrXII 528749 . T A 8699.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=31.29;SB=-4.761e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8699,680,0 chrXII 543095 . G T 535.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.522;DP=208;Dels=0.00;FS=203.515;HaplotypeScore=10.0906;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=0.536;QD=2.57;ReadPosRankSum=-1.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,79:208:99:565,0,3129 chrXII 585959 . G A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.253;DP=231;Dels=0.00;FS=312.233;HaplotypeScore=32.2295;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-0.814;QD=0.18;ReadPosRankSum=-8.182;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,40:231:72:72,0,2032 chrXII 636568 . C T 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.531;DP=195;Dels=0.01;FS=176.649;HaplotypeScore=19.3859;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=1.957;QD=0.88;ReadPosRankSum=-4.977;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,96:193:99:201,0,1086 chrXII 636574 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820;DP=189;Dels=0.00;FS=172.004;HaplotypeScore=61.2040;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=0.947;QD=0.20;ReadPosRankSum=-4.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,89:189:67:67,0,1206 chrXII 725936 . G A 11177.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=36.65;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:11177,819,0 chrXII 828903 . C T 9633.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=34.53;SB=-4.793e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:9633,728,0 chrXII 944060 . G A 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.03;MQ0=188;MQRankSum=-1.421;QD=0.46;ReadPosRankSum=0.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,19:219:99:131,0,193 chrXII 944174 . T C 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.69;MQ0=164;MQRankSum=-0.170;QD=0.20;ReadPosRankSum=-2.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:186,13:199:69:69,0,355 chrXII 944238 . C A 736 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.30;MQ0=122;QD=4.23;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:102,72:174:69:769,69,0 chrXII 981357 . T C 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;DP=324;Dels=0.00;FS=3.727;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=14.98;MQ0=229;MQRankSum=-2.750;QD=0.26;ReadPosRankSum=1.894;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:285,39:324:99:113,0,1781 chrXII 1025001 . G T 403.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.596;DP=198;Dels=0.02;FS=261.511;HaplotypeScore=72.5830;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=1;MQRankSum=0.480;QD=2.04;ReadPosRankSum=6.435;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:93,101:194:99:433,0,536 chrXII 1025005 . A T 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.556;DP=214;Dels=0.00;FS=337.529;HaplotypeScore=75.6728;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=1;MQRankSum=-0.944;QD=0.82;ReadPosRankSum=-0.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,93:214:99:205,0,828 chrXII 1039435 . T A 7175.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=35.00;SB=-3.605e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:7175,551,0 chrXIII 5306 . T C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.68;MQ0=181;MQRankSum=-0.970;QD=0.15;ReadPosRankSum=-0.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,6:231:65:65,0,1200 chrXIII 34473 . T G 10005.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=1.8633;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=34.38;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:10005,770,0 chrXIII 158433 . T A 271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.665;DP=156;Dels=0.00;FS=251.644;HaplotypeScore=21.9078;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=1;MQRankSum=-0.329;QD=1.74;ReadPosRankSum=-7.370;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,38:155:99:301,0,1137 chrXIII 192013 . C T 99.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.117;DP=302;Dels=0.01;FS=507.942;HaplotypeScore=34.9119;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-0.809;QD=0.33;ReadPosRankSum=-11.681;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:189,102:298:99:129,0,2432 chrXIII 202197 . T C 1393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850;DP=337;Dels=0.00;FS=86.153;HaplotypeScore=12.4312;MLEAC=1;MLEAF=0.500;MQ=43.46;MQ0=39;MQRankSum=-6.089;QD=4.13;ReadPosRankSum=-8.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,185:337:99:1423,0,3573 chrXIII 238793 . A T 550.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.210;DP=261;Dels=0.00;FS=631.970;HaplotypeScore=119.2154;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=2;MQRankSum=0.873;QD=2.11;ReadPosRankSum=-10.564;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:162,99:261:99:580,0,617 chrXIII 238806 . G T 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.265;DP=195;Dels=0.00;FS=183.499;HaplotypeScore=14.3348;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=1;MQRankSum=-1.470;QD=0.55;ReadPosRankSum=-6.834;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,19:195:99:137,0,1271 chrXIII 325905 . T A 7425.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=33.75;SB=-4.373e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:7425,575,0 chrXIII 361550 . G A 583 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=22;QD=10.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:63:616,63,0 chrXIII 403163 . G T 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.339;DP=214;Dels=0.00;FS=76.251;HaplotypeScore=16.4871;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-0.246;QD=0.31;ReadPosRankSum=-3.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,35:214:96:96,0,4607 chrXIII 448333 . G A 438 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=1.53;SB=-4.696e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:57:471,57,0 chrXIII 448334 . A G 382 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=1.33;SB=-4.636e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:51:415,51,0 chrXIII 483774 . G A 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.927;DP=189;Dels=0.02;FS=300.626;HaplotypeScore=52.1979;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-0.349;QD=0.51;ReadPosRankSum=-6.566;SB=1.11 GT:AD:DP:GQ:PL 0/1:154,32:186:99:126,0,651 chrXIII 508047 . G T 1139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.784;DP=274;Dels=0.00;FS=509.844;HaplotypeScore=64.6803;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-1.689;QD=4.16;ReadPosRankSum=4.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,118:274:99:1169,0,3560 chrXIII 508063 . A T 371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.393;DP=239;Dels=0.00;FS=331.248;HaplotypeScore=34.0104;MLEAC=1;MLEAF=0.500;MQ=55.20;MQ0=0;MQRankSum=-2.534;QD=1.55;ReadPosRankSum=-8.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,83:239:99:401,0,4661 chrXIII 571267 . G A 335.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.447;DP=303;Dels=0.01;FS=371.949;HaplotypeScore=17.5417;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=3.184;QD=1.11;ReadPosRankSum=-10.078;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,130:300:99:365,0,702 chrXIII 630505 . A G 7429.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.9250;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=34.71;SB=-4.039e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7429,569,0 chrXIII 672129 . T C 8153.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=32.61;SB=-3.590e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:8153,632,0 chrXIII 674889 . C T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020;DP=152;Dels=0.00;FS=100.073;HaplotypeScore=45.8321;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=0.678;QD=0.52;ReadPosRankSum=-4.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,26:152:99:109,0,1231 chrXIII 680936 . T C 137.06 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=0.64;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:21:170,21,0 chrXIII 680940 . C T 163.03 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=0.76;SB=-3.612e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:24:196,24,0 chrXIII 772695 . C T 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.009;DP=184;Dels=0.00;FS=359.693;HaplotypeScore=72.5346;MLEAC=1;MLEAF=0.500;MQ=53.78;MQ0=0;MQRankSum=-2.067;QD=1.80;ReadPosRankSum=-5.485;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,65:184:99:362,0,1873 chrXIII 809198 . A G 9042.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=7.3385;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=34.51;SB=-4.846e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:9042,692,0 chrXIII 851747 . T A 1032.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.834;DP=303;Dels=0.00;FS=749.104;HaplotypeScore=100.0466;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=0.857;QD=3.41;ReadPosRankSum=-12.956;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:130,172:302:99:1062,0,1976 chrXIII 908185 . A G 3381.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.375;DP=345;Dels=0.00;FS=29.240;HaplotypeScore=39.9821;MLEAC=1;MLEAF=0.500;MQ=39.03;MQ0=0;MQRankSum=-9.211;QD=9.80;ReadPosRankSum=-2.822;SB=-7.400e+02 GT:AD:DP:GQ:PL 0/1:160,185:345:99:3381,0,3698 chrXIII 908196 . G C 3456.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;DP=346;Dels=0.00;FS=27.685;HaplotypeScore=13.6453;MLEAC=1;MLEAF=0.500;MQ=41.27;MQ0=0;MQRankSum=-8.910;QD=9.99;ReadPosRankSum=-5.192;SB=-7.710e+02 GT:AD:DP:GQ:PL 0/1:157,189:346:99:3456,0,3983 chrXIII 908198 . G T 3512.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;DP=348;Dels=0.00;FS=34.507;HaplotypeScore=12.6719;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=0;MQRankSum=-8.061;QD=10.09;ReadPosRankSum=-5.249;SB=-6.250e+02 GT:AD:DP:GQ:PL 0/1:158,190:348:99:3512,0,4025 chrXIII 908203 . G A 3836.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.651;DP=372;Dels=0.00;FS=29.177;HaplotypeScore=9.2358;MLEAC=1;MLEAF=0.500;MQ=41.69;MQ0=1;MQRankSum=-7.223;QD=10.31;ReadPosRankSum=-5.253;SB=-1.019e+03 GT:AD:DP:GQ:PL 0/1:168,204:372:99:3836,0,4104 chrXIII 908218 . C T 4271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=364;Dels=0.00;FS=9.626;HaplotypeScore=20.4608;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=1;MQRankSum=-5.236;QD=11.73;ReadPosRankSum=-4.298;SB=-1.725e+03 GT:AD:DP:GQ:PL 0/1:150,213:364:99:4271,0,3942 chrXIII 908275 . G A 377.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DP=353;Dels=0.00;FS=11.426;HaplotypeScore=44.6412;MLEAC=1;MLEAF=0.500;MQ=50.99;MQ0=1;MQRankSum=-0.168;QD=1.07;ReadPosRankSum=-4.765;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:307,45:353:99:407,0,8314 chrXIII 908365 . A G 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.885;DP=401;Dels=0.00;FS=36.278;HaplotypeScore=36.9308;MLEAC=1;MLEAF=0.500;MQ=48.17;MQ0=3;MQRankSum=-5.357;QD=0.50;ReadPosRankSum=-5.527;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:328,73:401:99:230,0,8274 chrXIII 908563 . A G 422.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=535;Dels=0.00;FS=32.737;HaplotypeScore=270.2160;MLEAC=1;MLEAF=0.500;MQ=50.42;MQ0=1;MQRankSum=-9.652;QD=0.79;ReadPosRankSum=8.036;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:447,85:535:99:452,0,9628 chrXIII 908594 . T G 1157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=458;Dels=0.00;FS=73.793;HaplotypeScore=94.2770;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=0;MQRankSum=-11.316;QD=2.53;ReadPosRankSum=-7.421;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:345,112:458:99:1187,0,10250 chrXIII 908611 . G A 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DP=347;Dels=0.00;FS=48.623;HaplotypeScore=69.8997;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=-4.516;QD=0.29;ReadPosRankSum=-5.996;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:286,47:347:99:129,0,8624 chrXIII 924341 . G T 2179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.413;DP=244;Dels=0.02;FS=1.969;HaplotypeScore=124.4401;MLEAC=1;MLEAF=0.500;MQ=36.39;MQ0=13;MQRankSum=6.566;QD=8.93;ReadPosRankSum=2.299;SB=-7.160e+02 GT:AD:DP:GQ:PL 0/1:100,138:238:99:2209,0,249 chrXIV 377887 . G T 7399.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.9950;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=32.74;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:7399,563,0 chrXIV 415071 . C T 285.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;DP=229;Dels=0.00;FS=6.728;HaplotypeScore=16.8478;MLEAC=1;MLEAF=0.500;MQ=64.04;MQ0=0;MQRankSum=2.494;QD=1.24;ReadPosRankSum=0.556;SB=-2.616e+03 GT:AD:DP:GQ:PL 0/1:7,218:229:40:315,0,40 chrXIV 415088 . C T 206.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.607;DP=218;Dels=0.00;FS=367.687;HaplotypeScore=19.4365;MLEAC=1;MLEAF=0.500;MQ=64.38;MQ0=0;MQRankSum=1.750;QD=0.94;ReadPosRankSum=-8.722;SB=-6.502e+01 GT:AD:DP:GQ:PL 0/1:93,125:218:99:236,0,338 chrXIV 415096 . C T 233.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.962;DP=217;Dels=0.00;FS=348.352;HaplotypeScore=20.9814;MLEAC=1;MLEAF=0.500;MQ=64.46;MQ0=0;MQRankSum=2.297;QD=1.07;ReadPosRankSum=-8.442;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:89,127:216:99:263,0,516 chrXIV 471767 . A G 5127.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=32.87;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5127,385,0 chrXIV 523924 . C T 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.736;DP=262;Dels=0.00;FS=9.434;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=43.67;MQ0=2;MQRankSum=-7.377;QD=0.27;ReadPosRankSum=2.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:228,34:262:99:100,0,6841 chrXIV 523932 . T A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DP=254;Dels=0.00;FS=5.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=2;MQRankSum=-8.416;QD=0.11;ReadPosRankSum=4.520;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,34:254:59:59,0,7174 chrXIV 523934 . A C 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.557;DP=253;Dels=0.00;FS=5.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.21;MQ0=2;MQRankSum=-8.411;QD=0.11;ReadPosRankSum=4.477;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,34:253:59:59,0,7250 chrXIV 523938 . A G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.099;DP=253;Dels=0.00;FS=3.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.21;MQ0=2;MQRankSum=-8.411;QD=0.21;ReadPosRankSum=4.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,34:253:82:82,0,7288 chrXIV 523952 . A G 97.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.555;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.4465;MLEAC=1;MLEAF=0.500;MQ=44.46;MQ0=3;MQRankSum=-7.846;QD=0.40;ReadPosRankSum=3.193;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:209,34:244:99:127,0,6776 chrXIV 667351 . A T 121.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.639;DP=177;Dels=0.00;FS=426.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=-0.459;QD=0.68;ReadPosRankSum=-9.432;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:129,48:177:99:151,0,1203 chrXIV 711247 . A T 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091;DP=223;Dels=0.01;FS=85.956;HaplotypeScore=40.1955;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-0.709;QD=0.53;ReadPosRankSum=-2.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,65:221:99:148,0,1644 chrXIV 772633 . G A 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.806;DP=261;Dels=0.02;FS=652.923;HaplotypeScore=13.6191;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=0;MQRankSum=-1.049;QD=0.78;ReadPosRankSum=-9.022;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:168,87:255:99:234,0,966 chrXIV 772638 . G A 125.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.759;DP=252;Dels=0.00;FS=502.619;HaplotypeScore=14.0397;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=-1.417;QD=0.50;ReadPosRankSum=-9.607;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:179,73:252:99:155,0,1222 chrXIV 779333 . C A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.676;DP=162;Dels=0.00;FS=438.226;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=62.51;MQ0=0;MQRankSum=0.557;QD=0.19;ReadPosRankSum=-10.681;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:100,62:162:61:61,0,1856 chrXIV 782404 . G A 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DP=219;Dels=0.00;FS=13.479;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=19.02;MQ0=130;MQRankSum=-2.500;QD=0.53;ReadPosRankSum=-1.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,19:219:99:147,0,1594 chrXIV 784331 . G T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=22.0643;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=2;MQRankSum=1.648;QD=0.55;ReadPosRankSum=0.151;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,9:71:69:69,0,1211 chrXV 46 . A C 180.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490;DP=202;Dels=0.04;FS=6.782;HaplotypeScore=686.8970;MLEAC=1;MLEAF=0.500;MQ=37.82;MQ0=2;MQRankSum=-3.246;QD=0.89;ReadPosRankSum=0.171;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:160,33:193:99:210,0,1523 chrXV 27928 . T A 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=235;Dels=0.00;FS=65.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.87;MQ0=12;MQRankSum=-1.361;QD=1.42;ReadPosRankSum=-0.897;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,40:235:99:364,0,4712 chrXV 28352 . T C 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DP=212;Dels=0.00;FS=15.736;HaplotypeScore=11.3990;MLEAC=1;MLEAF=0.500;MQ=38.02;MQ0=0;MQRankSum=0.532;QD=0.92;ReadPosRankSum=0.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,24:212:99:225,0,5018 chrXV 28642 . C T 577.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;DP=192;Dels=0.00;FS=72.602;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=46.74;MQ0=4;MQRankSum=-5.241;QD=3.01;ReadPosRankSum=1.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,39:192:99:607,0,4772 chrXV 29144 . A G 1635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;DP=362;Dels=0.00;FS=234.371;HaplotypeScore=2.2433;MLEAC=1;MLEAF=0.500;MQ=49.56;MQ0=1;MQRankSum=-10.094;QD=4.52;ReadPosRankSum=1.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:273,89:362:99:1665,0,8768 chrXV 31220 . A G 495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=315;Dels=0.01;FS=47.187;HaplotypeScore=48.1187;MLEAC=1;MLEAF=0.500;MQ=55.73;MQ0=0;MQRankSum=-3.877;QD=1.57;ReadPosRankSum=-10.465;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:253,59:312:99:525,0,7652 chrXV 50002 . C T 5719.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=34.87;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5719,445,0 chrXV 50010 . A T 5232.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=29.73;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5232,433,0 chrXV 50012 . C T 5275.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=29.31;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5275,445,0 chrXV 60238 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.960;DP=280;Dels=0.00;FS=560.458;HaplotypeScore=29.5048;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=1.628;QD=0.05;ReadPosRankSum=-11.298;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:220,60:280:43:43,0,2484 chrXV 60240 . C T 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=276;Dels=0.03;FS=0.000;HaplotypeScore=30.2387;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.393;QD=10.90;ReadPosRankSum=0.899;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,267:269:99:3042,247,0 chrXV 79297 . C G 7284.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=30.73;SB=-4.096e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:7284,599,0 chrXV 79304 . A T 131.06 SnpCluster AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=0.48;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:21:164,21,0 chrXV 79305 . T A 131.06 SnpCluster AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=0.48;SB=-3.617e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:21:164,21,0 chrXV 85398 . C T 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.983;DP=166;Dels=0.00;FS=147.078;HaplotypeScore=7.1523;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-0.614;QD=0.48;ReadPosRankSum=-5.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,39:166:99:110,0,2306 chrXV 118032 . A C 237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;DP=698;Dels=0.00;FS=13.319;HaplotypeScore=3.3118;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=6;MQRankSum=-19.992;QD=0.34;ReadPosRankSum=-0.054;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:382,316:698:99:267,0,12065 chrXV 118287 . C A 686.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;DP=269;Dels=0.00;FS=4.935;HaplotypeScore=2.5750;MLEAC=1;MLEAF=0.500;MQ=15.60;MQ0=166;MQRankSum=3.025;QD=2.55;ReadPosRankSum=1.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:233,36:269:99:716,0,967 chrXV 204593 . C T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.028;DP=173;Dels=0.00;FS=333.828;HaplotypeScore=26.7034;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=0.651;QD=0.19;ReadPosRankSum=-6.486;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,44:173:63:63,0,1506 chrXV 216923 . A T 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.373;DP=192;Dels=0.01;FS=173.419;HaplotypeScore=104.3244;MLEAC=1;MLEAF=0.500;MQ=46.95;MQ0=0;MQRankSum=-4.317;QD=0.31;ReadPosRankSum=3.976;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,73:190:89:89,0,1029 chrXV 216933 . C T 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.164;DP=171;Dels=0.01;FS=246.504;HaplotypeScore=91.2249;MLEAC=1;MLEAF=0.500;MQ=46.51;MQ0=0;MQRankSum=-5.791;QD=0.73;ReadPosRankSum=5.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,73:170:99:154,0,1598 chrXV 216949 . C T 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.386;DP=160;Dels=0.02;FS=181.370;HaplotypeScore=90.5500;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=0;MQRankSum=-7.290;QD=1.16;ReadPosRankSum=-3.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,55:157:99:215,0,2051 chrXV 216952 . G T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.320;DP=161;Dels=0.00;FS=202.794;HaplotypeScore=53.3724;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=0;MQRankSum=-6.385;QD=0.24;ReadPosRankSum=-5.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,60:161:69:69,0,1983 chrXV 216964 . C T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.145;DP=149;Dels=0.00;FS=189.633;HaplotypeScore=62.7041;MLEAC=1;MLEAF=0.500;MQ=47.84;MQ0=0;MQRankSum=-7.846;QD=0.26;ReadPosRankSum=-7.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,49:149:69:69,0,2238 chrXV 230047 . A T 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.462;DP=201;Dels=0.00;FS=224.396;HaplotypeScore=35.4835;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=2;MQRankSum=-0.467;QD=0.38;ReadPosRankSum=-3.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,37:201:99:107,0,1777 chrXV 273921 . G T 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330;DP=238;Dels=0.00;FS=216.174;HaplotypeScore=4.0351;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=-2.328;QD=0.21;ReadPosRankSum=-6.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,47:238:81:81,0,5471 chrXV 400736 . A G 3388.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;DP=240;Dels=0.00;FS=0.995;HaplotypeScore=1.9986;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.669;QD=14.12;ReadPosRankSum=1.062;SB=-1.648e+03 GT:AD:DP:GQ:PL 0/1:126,114:240:99:3388,0,4068 chrXV 557871 . C G 3272.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929;DP=211;Dels=0.00;FS=4.097;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=1;MQRankSum=-0.281;QD=15.51;ReadPosRankSum=-2.307;SB=-1.410e+03 GT:AD:DP:GQ:PL 0/1:107,104:211:99:3272,0,3318 chrXV 670787 . G A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.464;DP=164;Dels=0.01;FS=164.015;HaplotypeScore=21.7673;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=1.403;QD=0.12;ReadPosRankSum=-6.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,34:163:50:50,0,1040 chrXV 746577 . T G 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;DP=189;Dels=0.00;FS=76.318;HaplotypeScore=8.6340;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=1;MQRankSum=1.271;QD=0.10;ReadPosRankSum=-0.064;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,43:189:48:48,0,659 chrXV 773264 . G C 3867.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DP=256;Dels=0.00;FS=1.051;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=1.254;QD=15.11;ReadPosRankSum=-0.813;SB=-1.237e+03 GT:AD:DP:GQ:PL 0/1:130,126:256:99:3867,0,4062 chrXV 909093 . G T 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.822;DP=272;Dels=0.01;FS=397.678;HaplotypeScore=55.0577;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=1;MQRankSum=1.005;QD=0.79;ReadPosRankSum=-6.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,121:269:99:246,0,1450 chrXV 1000993 . A T 353.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.941;DP=214;Dels=0.00;FS=442.615;HaplotypeScore=6.1204;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-0.756;QD=1.65;ReadPosRankSum=-5.965;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:158,55:213:99:383,0,2019 chrXV 1000999 . A T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.519;DP=226;Dels=0.00;FS=372.291;HaplotypeScore=17.5441;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=-0.211;QD=0.15;ReadPosRankSum=-7.559;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:177,49:226:65:65,0,2698 chrXV 1081627 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;DP=160;Dels=0.00;FS=39.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.62;MQ0=135;MQRankSum=-1.825;QD=0.08;ReadPosRankSum=-3.123;SB=-1.249e+00 GT:AD:DP:GQ:PL 0/1:87,73:160:42:42,0,170 chrXV 1090625 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=4.65;MQ0=378;MQRankSum=0.000;QD=0.03;ReadPosRankSum=-0.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:382,9:391:41:41,0,166 chrXV 1090749 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=438;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=4.93;MQ0=424;MQRankSum=-0.071;QD=0.08;ReadPosRankSum=1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:426,12:438:64:64,0,262 chrXVI 9545 . C A 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.227;DP=296;Dels=0.00;FS=146.703;HaplotypeScore=9.7636;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=93;MQRankSum=2.314;QD=0.23;ReadPosRankSum=-4.152;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:279,17:296:98:98,0,175 chrXVI 191944 . C T 8784.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.3985;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=36.00;SB=-3.991e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:8784,662,0 chrXVI 359501 . G T 1051.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.346;DP=182;Dels=0.01;FS=442.028;HaplotypeScore=4.9975;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=1;MQRankSum=0.642;QD=5.77;ReadPosRankSum=-9.095;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:112,69:181:99:1081,0,2005 chrXVI 403300 . G T 665.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.505;DP=197;Dels=0.00;FS=231.926;HaplotypeScore=13.4658;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=0.489;QD=3.38;ReadPosRankSum=-5.938;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,66:197:99:695,0,3666 chrXVI 415024 . C G 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.912;DP=136;Dels=0.00;FS=213.607;HaplotypeScore=7.8027;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=2.521;QD=0.94;ReadPosRankSum=-8.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,42:136:99:158,0,2993 chrXVI 424350 . G T 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.721;DP=181;Dels=0.00;FS=338.532;HaplotypeScore=33.1372;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=-0.708;QD=2.02;ReadPosRankSum=-7.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,51:181:99:395,0,4063 chrXVI 424943 . G C 232.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.213;DP=186;Dels=0.00;FS=388.911;HaplotypeScore=27.7140;MLEAC=1;MLEAF=0.500;MQ=54.19;MQ0=1;MQRankSum=-2.308;QD=1.25;ReadPosRankSum=-5.596;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:127,59:186:99:262,0,3943 chrXVI 502697 . G A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.123;DP=194;Dels=0.01;FS=243.116;HaplotypeScore=12.9515;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-1.292;QD=0.19;ReadPosRankSum=-8.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,56:192:67:67,0,1001 chrXVI 611497 . T G 223.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.592;DP=249;Dels=0.00;FS=134.998;HaplotypeScore=9.3392;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.241;QD=0.90;ReadPosRankSum=-5.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,89:249:99:253,0,4229 chrXVI 759400 . T G 9369.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=7.9718;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=33.22;SB=-4.533e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:9369,707,0 chrXVI 837101 . G T 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.745;DP=228;Dels=0.00;FS=182.732;HaplotypeScore=18.0525;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=0.954;QD=0.39;ReadPosRankSum=-5.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,69:228:99:118,0,4024 chrXVI 886471 . A T 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.305;DP=221;Dels=0.01;FS=261.678;HaplotypeScore=17.2688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.345;QD=0.75;ReadPosRankSum=-5.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,77:218:99:196,0,1978 chrXVI 890346 . T A 7406.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=34.61;SB=-4.073e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7406,554,0 chrXVI 943050 . C A 348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;DP=259;Dels=0.00;FS=91.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.24;MQ0=118;MQRankSum=-0.272;QD=1.34;ReadPosRankSum=2.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,36:259:99:378,0,1629