##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BY4742_F_filt.fq.rmdup.bam
chr01	25340	.	C	A	192	.	DP=78;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,37,41;MQ=21;FQ=-262	GT:PL:GQ	1/1:225,235,0:99
chr01	25488	.	G	A	222	.	DP=32;VDB=0.0061;AF1=1;AC1=2;DP4=0,0,15,17;MQ=28;FQ=-123	GT:PL:GQ	1/1:255,96,0:99
chr01	25497	.	G	A	117	.	DP=17;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,8,9;MQ=17;FQ=-78	GT:PL:GQ	1/1:150,51,0:99
chr01	41475	.	G	T	222	.	DP=87;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,44,43;MQ=60;FQ=-282	GT:PL:GQ	1/1:255,255,0:99
chr01	141030	.	T	A	105	.	DP=37;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,36,0;MQ=25;FQ=-135	GT:PL:GQ	1/1:138,108,0:99
chr01	141135	.	A	T	114	.	DP=44;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,44,0;MQ=29;FQ=-159	GT:PL:GQ	1/1:147,132,0:99
chr01	199811	.	T	G	222	.	DP=63;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,27,36;MQ=60;FQ=-217	GT:PL:GQ	1/1:255,190,0:99
chr02	5983	.	C	G	222	.	DP=84;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,42,42;MQ=54;FQ=-280	GT:PL:GQ	1/1:255,253,0:99
chr02	6440	.	G	C	179	.	DP=39;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,29,10;MQ=24;FQ=-144	GT:PL:GQ	1/1:212,117,0:99
chr02	15101	.	T	G	222	.	DP=70;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,35,35;MQ=60;FQ=-238	GT:PL:GQ	1/1:255,211,0:99
chr02	15510	.	G	T	222	.	DP=77;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,36,41;MQ=60;FQ=-259	GT:PL:GQ	1/1:255,232,0:99
chr02	15518	.	A	G	222	.	DP=77;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,37,40;MQ=60;FQ=-259	GT:PL:GQ	1/1:255,232,0:99
chr02	16380	.	C	T	222	.	DP=80;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,43,37;MQ=60;FQ=-268	GT:PL:GQ	1/1:255,241,0:99
chr02	16392	.	A	G	222	.	DP=78;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,43,35;MQ=60;FQ=-262	GT:PL:GQ	1/1:255,235,0:99
chr02	30012	.	C	T	118	.	DP=76;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,41,35;MQ=15;FQ=-256	GT:PL:GQ	1/1:151,229,0:99
chr02	35485	.	C	T	112	.	DP=28;VDB=0.0415;AF1=1;AC1=2;DP4=0,0,28,0;MQ=28;FQ=-111	GT:PL:GQ	1/1:145,84,0:99
chr02	59755	.	T	C	222	.	DP=54;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,30,24;MQ=60;FQ=-190	GT:PL:GQ	1/1:255,163,0:99
chr02	383176	.	CGG	CGGG	214	.	INDEL;DP=48;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,22,21;MQ=60;FQ=-164	GT:PL:GQ	1/1:255,129,0:99
chr02	389429	.	C	G	222	.	DP=11;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,5;MQ=60;FQ=-60	GT:PL:GQ	1/1:255,33,0:63
chr02	389430	.	G	C	222	.	DP=13;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-66	GT:PL:GQ	1/1:255,39,0:75
chr02	474238	.	GAAAA	GAAA	81.5	.	INDEL;DP=16;VDB=0.0055;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-82.5	GT:PL:GQ	1/1:122,48,0:93
chr02	474544	.	A	G	222	.	DP=79;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,40,39;MQ=60;FQ=-265	GT:PL:GQ	1/1:255,238,0:99
chr02	474920	.	T	C	222	.	DP=88;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,44,44;MQ=60;FQ=-282	GT:PL:GQ	1/1:255,255,0:99
chr03	84780	.	A	T	179	.	DP=18;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81	GT:PL:GQ	1/1:212,54,0:99
chr03	143131	.	T	C	222	.	DP=77;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,38,39;MQ=50;FQ=-259	GT:PL:GQ	1/1:255,232,0:99
chr03	162361	.	T	C	222	.	DP=46;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,14,32;MQ=60;FQ=-165	GT:PL:GQ	1/1:255,138,0:99
chr03	162396	.	G	C	222	.	DP=46;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,11,35;MQ=60;FQ=-165	GT:PL:GQ	1/1:255,138,0:99
chr03	162640	.	T	G	222	.	DP=68;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,35,33;MQ=60;FQ=-232	GT:PL:GQ	1/1:255,205,0:99
chr03	162694	.	G	A	222	.	DP=70;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,38,32;MQ=60;FQ=-238	GT:PL:GQ	1/1:255,211,0:99
chr03	162712	.	TAAAAAAAAAA	TAAAAAAAAA	43.5	.	INDEL;DP=70;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,28,23;MQ=60;FQ=-189	GT:PL:GQ	1/1:84,154,0:99
chr03	163059	.	T	C	222	.	DP=55;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,27,28;MQ=60;FQ=-193	GT:PL:GQ	1/1:255,166,0:99
chr03	163163	.	GAAAAAAAAA	GAAAAAAAAAA	47.5	.	INDEL;DP=57;VDB=0.0836;AF1=1;AC1=2;DP4=0,1,20,13;MQ=60;FQ=-122;PV4=0.41,1,1,1	GT:PL:GQ	1/1:88,87,0:99
chr03	163192	.	ATTT	ATTTT	214	.	INDEL;DP=59;VDB=0.0836;AF1=1;AC1=2;DP4=0,0,24,25;MQ=60;FQ=-183	GT:PL:GQ	1/1:255,148,0:99
chr04	757631	.	G	C	135	.	DP=45;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,39,6;MQ=22;FQ=-162	GT:PL:GQ	1/1:168,135,0:99
chr04	769328	.	G	A	222	.	DP=69;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,34,35;MQ=60;FQ=-235	GT:PL:GQ	1/1:255,208,0:99
chr04	783598	.	G	A	222	.	DP=78;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,41,37;MQ=60;FQ=-262	GT:PL:GQ	1/1:255,235,0:99
chr04	817531	.	TAAAAAAAAAA	TAAAAAAAAAAA	47.5	.	INDEL;DP=58;VDB=0.0940;AF1=1;AC1=2;DP4=3,1,15,24;MQ=60;FQ=-112;PV4=0.29,1,1,0.41	GT:PL:GQ	1/1:88,77,0:99
chr04	864219	.	A	G	222	.	DP=80;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,40,40;MQ=60;FQ=-268	GT:PL:GQ	1/1:255,241,0:99
chr04	1150910	.	AGG	AGGG	156	.	INDEL;DP=16;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,6;MQ=51;FQ=-58.5	GT:PL:GQ	1/1:197,24,0:45
chr04	1253397	.	T	C	222	.	DP=79;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,41,38;MQ=60;FQ=-265	GT:PL:GQ	1/1:255,238,0:99
chr04	1402305	.	C	T	222	.	DP=80;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,42,38;MQ=60;FQ=-268	GT:PL:GQ	1/1:255,241,0:99
chr04	1433710	.	A	T	222	.	DP=68;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,32,36;MQ=60;FQ=-232	GT:PL:GQ	1/1:255,205,0:99
chr04	1524974	.	A	G	222	.	DP=85;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,44,41;MQ=30;FQ=-282	GT:PL:GQ	1/1:255,255,0:99
chr04	1525313	.	T	G	156	.	DP=27;VDB=0.0256;AF1=1;AC1=2;DP4=0,0,0,27;MQ=33;FQ=-108	GT:PL:GQ	1/1:189,81,0:99
chr05	48384	.	T	C	222	.	DP=76;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,37,39;MQ=60;FQ=-256	GT:PL:GQ	1/1:255,229,0:99
chr05	154531	.	T	A	222	.	DP=67;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,31,36;MQ=60;FQ=-229	GT:PL:GQ	1/1:255,202,0:99
chr05	352394	.	A	G	222	.	DP=76;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,35,41;MQ=60;FQ=-256	GT:PL:GQ	1/1:255,229,0:99
chr05	517529	.	T	C	222	.	DP=65;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,25,40;MQ=60;FQ=-223	GT:PL:GQ	1/1:255,196,0:99
chr07	386978	.	C	G	222	.	DP=70;VDB=0.0836;AF1=1;AC1=2;DP4=0,0,35,35;MQ=34;FQ=-235	GT:PL:GQ	1/1:255,208,0:99
chr07	386979	.	G	C	222	.	DP=70;VDB=0.0710;AF1=1;AC1=2;DP4=0,0,35,35;MQ=35;FQ=-238	GT:PL:GQ	1/1:255,211,0:99
chr07	401674	.	C	A	71	.	DP=19;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,19;MQ=18;FQ=-84	GT:PL:GQ	1/1:104,57,0:99
chr07	401698	.	T	A	95	.	DP=23;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,23;MQ=21;FQ=-96	GT:PL:GQ	1/1:128,69,0:99
chr07	1006279	.	G	GC	54.4	.	INDEL;DP=26;VDB=0.0774;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-43.5	GT:PL:GQ	1/1:94,9,0:16
chr08	85508	.	TTATATATAT	TTATATAT	214	.	INDEL;DP=25;VDB=0.0774;AF1=1;AC1=2;DP4=0,0,6,6;MQ=42;FQ=-70.5	GT:PL:GQ	1/1:255,36,0:69
chr08	417054	.	G	A	222	.	DP=66;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,29,37;MQ=60;FQ=-226	GT:PL:GQ	1/1:255,199,0:99
chr08	524447	.	C	G	222	.	DP=66;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,33,33;MQ=60;FQ=-223	GT:PL:GQ	1/1:255,196,0:99
chr09	105433	.	AAATAATAAT	AAATAATAATAAT	214	.	INDEL;DP=30;VDB=0.0846;AF1=1;AC1=2;DP4=0,0,13,6;MQ=59;FQ=-91.5	GT:PL:GQ	1/1:255,57,0:99
chr09	318694	.	T	A	222	.	DP=83;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,40,43;MQ=60;FQ=-277	GT:PL:GQ	1/1:255,250,0:99
chr10	97478	.	G	A	222	.	DP=82;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,43,39;MQ=60;FQ=-274	GT:PL:GQ	1/1:255,247,0:99
chr10	199170	.	A	C	142	.	DP=36;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,16,19;MQ=20;FQ=-132	GT:PL:GQ	1/1:175,105,0:99
chr10	200219	.	A	G	123	.	DP=33;VDB=0.0836;AF1=1;AC1=2;DP4=1,0,3,29;MQ=23;FQ=-106;PV4=0.12,1,0.47,1	GT:PL:GQ	1/1:156,79,0:99
chr10	611711	.	A	T	222	.	DP=73;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,39,34;MQ=60;FQ=-247	GT:PL:GQ	1/1:255,220,0:99
chr10	640784	.	GAAAAAAAAAA	GAAAAAAAAAAA	40.5	.	INDEL;DP=56;VDB=0.0918;AF1=1;AC1=2;DP4=2,1,20,19;MQ=60;FQ=-120;PV4=1,1,1,1	GT:PL:GQ	1/1:81,85,0:99
chr10	740238	.	T	C	103	.	DP=26;VDB=0.0784;AF1=1;AC1=2;DP4=0,0,14,12;MQ=19;FQ=-105	GT:PL:GQ	1/1:136,78,0:99
chr11	68454	.	G	GCC	214	.	INDEL;DP=34;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,14,11;MQ=60;FQ=-110	GT:PL:GQ	1/1:255,75,0:99
chr11	68468	.	T	TG	214	.	INDEL;DP=32;VDB=0.0374;AF1=1;AC1=2;DP4=0,0,14,12;MQ=60;FQ=-113	GT:PL:GQ	1/1:255,78,0:99
chr11	666556	.	GT	G	214	.	INDEL;DP=77;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,33,37;MQ=55;FQ=-246	GT:PL:GQ	1/1:255,211,0:99
chr12	187137	.	ATTT	ATT	214	.	INDEL;DP=76;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,35,33;MQ=60;FQ=-240	GT:PL:GQ	1/1:255,205,0:99
chr12	291384	.	A	G	222	.	DP=69;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,38,31;MQ=60;FQ=-235	GT:PL:GQ	1/1:255,208,0:99
chr12	291386	.	A	G	222	.	DP=68;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,37,31;MQ=60;FQ=-232	GT:PL:GQ	1/1:255,205,0:99
chr12	528749	.	T	A	222	.	DP=75;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,38,37;MQ=60;FQ=-253	GT:PL:GQ	1/1:255,226,0:99
chr12	725936	.	G	A	222	.	DP=75;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,34,41;MQ=60;FQ=-253	GT:PL:GQ	1/1:255,226,0:99
chr12	828903	.	C	T	222	.	DP=81;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,40,41;MQ=60;FQ=-271	GT:PL:GQ	1/1:255,244,0:99
chr12	880628	.	C	G	222	.	DP=80;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,38,41;MQ=60;FQ=-265	GT:PL:GQ	1/1:255,238,0:99
chr12	1039435	.	T	A	222	.	DP=71;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,37,34;MQ=60;FQ=-241	GT:PL:GQ	1/1:255,214,0:99
chr13	34473	.	T	G	222	.	DP=84;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,42,42;MQ=60;FQ=-277	GT:PL:GQ	1/1:255,250,0:99
chr13	325905	.	T	A	222	.	DP=77;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,40,37;MQ=60;FQ=-259	GT:PL:GQ	1/1:255,232,0:99
chr13	448333	.	G	A	222	.	DP=71;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,38,33;MQ=60;FQ=-241	GT:PL:GQ	1/1:255,214,0:99
chr13	448334	.	A	G	222	.	DP=71;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,37,33;MQ=60;FQ=-238	GT:PL:GQ	1/1:255,211,0:99
chr13	519309	.	G	C	222	.	DP=56;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,24,32;MQ=60;FQ=-196	GT:PL:GQ	1/1:255,169,0:99
chr13	630505	.	A	G	222	.	DP=67;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,34,33;MQ=60;FQ=-229	GT:PL:GQ	1/1:255,202,0:99
chr13	672129	.	T	C	222	.	DP=83;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,41,42;MQ=60;FQ=-277	GT:PL:GQ	1/1:255,250,0:99
chr13	680936	.	T	C	222	.	DP=70;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,31,39;MQ=60;FQ=-238	GT:PL:GQ	1/1:255,211,0:99
chr13	680940	.	C	T	222	.	DP=73;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,32,41;MQ=60;FQ=-247	GT:PL:GQ	1/1:255,220,0:99
chr13	809198	.	A	G	222	.	DP=74;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,40,34;MQ=60;FQ=-250	GT:PL:GQ	1/1:255,223,0:99
chr14	6636	.	CA	C	108	.	INDEL;DP=33;VDB=0.0656;AF1=1;AC1=2;DP4=0,0,0,23;MQ=29;FQ=-104	GT:PL:GQ	1/1:149,69,0:99
chr14	43278	.	AATATATATATATATATATATATA	AATATATATATATATATATATA	37.2	.	INDEL;DP=14;VDB=0.0710;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5	GT:PL:GQ	1/1:76,6,0:10
chr14	189585	.	C	T	222	.	DP=75;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,36,39;MQ=60;FQ=-253	GT:PL:GQ	1/1:255,226,0:99
chr14	312328	.	AACGACGACG	AACGACG	214	.	INDEL;DP=37;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,8,9;MQ=60;FQ=-85.5	GT:PL:GQ	1/1:255,51,0:99
chr14	377887	.	G	T	222	.	DP=83;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,41,42;MQ=60;FQ=-277	GT:PL:GQ	1/1:255,250,0:99
chr14	439397	.	GTTTTTT	GTTTTTTT	135	.	INDEL;DP=71;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,26,34;MQ=60;FQ=-216	GT:PL:GQ	1/1:176,181,0:99
chr14	471767	.	A	G	222	.	DP=64;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,28,36;MQ=60;FQ=-220	GT:PL:GQ	1/1:255,193,0:99
chr15	50002	.	C	T	222	.	DP=37;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,17,20;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr15	50010	.	A	T	222	.	DP=34;VDB=0.0855;AF1=1;AC1=2;DP4=0,0,15,19;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr15	50012	.	C	T	222	.	DP=34;VDB=0.0906;AF1=1;AC1=2;DP4=0,0,15,19;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr15	60240	.	C	T	222	.	DP=24;VDB=0.0256;AF1=1;AC1=2;DP4=0,0,1,23;MQ=60;FQ=-99	GT:PL:GQ	1/1:255,72,0:99
chr15	79297	.	C	G	222	.	DP=30;VDB=0.0415;AF1=1;AC1=2;DP4=0,0,20,10;MQ=60;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
chr15	79304	.	A	T	222	.	DP=28;VDB=0.0750;AF1=1;AC1=2;DP4=0,0,20,8;MQ=60;FQ=-111	GT:PL:GQ	1/1:255,84,0:99
chr15	79305	.	T	A	222	.	DP=28;VDB=0.0750;AF1=1;AC1=2;DP4=0,0,20,8;MQ=60;FQ=-111	GT:PL:GQ	1/1:255,84,0:99
chr15	313096	.	A	T	222	.	DP=55;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,32,23;MQ=60;FQ=-193	GT:PL:GQ	1/1:255,166,0:99
chr15	411978	.	C	A	222	.	DP=76;VDB=0.0940;AF1=1;AC1=2;DP4=0,0,34,42;MQ=60;FQ=-256	GT:PL:GQ	1/1:255,229,0:99
chr16	191944	.	C	T	222	.	DP=75;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,35,40;MQ=60;FQ=-253	GT:PL:GQ	1/1:255,226,0:99
chr16	212823	.	GATATATATATATATATATATAT	GATATATATATATATATATAT	33.2	.	INDEL;DP=12;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5	GT:PL:GQ	1/1:72,6,0:10
chr16	481304	.	ATTTTTTTTTTTTT	ATTTTTTTTTTTT	21.5	.	INDEL;DP=32;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-76.5	GT:PL:GQ	1/1:62,42,0:60
chr16	759400	.	T	G	222	.	DP=79;VDB=0.0918;AF1=1;AC1=2;DP4=1,0,36,42;MQ=60;FQ=-225;PV4=0.47,0.31,1,1	GT:PL:GQ	1/1:255,198,0:99
chr16	890346	.	T	A	222	.	DP=79;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,39,40;MQ=60;FQ=-265	GT:PL:GQ	1/1:255,238,0:99
2-micron	5583	.	G	A	222	.	DP=88;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,44,44;MQ=60;FQ=-282	GT:PL:GQ	1/1:255,255,0:99
chrmt	20345	.	GAAA	GAA	214	.	INDEL;DP=75;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,29,40;MQ=60;FQ=-243	GT:PL:GQ	1/1:255,208,0:99
chrmt	20934	.	T	G	222	.	DP=85;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,41,44;MQ=60;FQ=-282	GT:PL:GQ	1/1:255,255,0:99
chrmt	33618	.	T	TTC	160	.	INDEL;DP=11;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-49.5	GT:PL:GQ	1/1:200,15,0:27
chrmt	39517	.	G	T	222	.	DP=67;VDB=0.0878;AF1=1;AC1=2;DP4=0,0,42,25;MQ=60;FQ=-229	GT:PL:GQ	1/1:255,202,0:99
chrmt	43084	.	ATTTTTTTT	ATTTTTTTTT	43.5	.	INDEL;DP=21;VDB=0.0918;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-85.5	GT:PL:GQ	1/1:84,51,0:91
chrmt	65917	.	CGGGGGGGGG	CGGGGGGGG	44.5	.	INDEL;DP=14;VDB=0.0710;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-73.5	GT:PL:GQ	1/1:85,39,0:74
chrmt	82507	.	T	A	146	.	DP=11;VDB=0.0656;AF1=1;AC1=2;DP4=0,0,11,0;MQ=46;FQ=-60	GT:PL:GQ	1/1:179,33,0:63