##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BY4741_F.fq.filt.rmdup.bam
chr01	25340	.	C	A	98	.	DP=29;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,16,13;MQ=15;FQ=-114	GT:PL:GQ	1/1:131,87,0:99
chr01	25488	.	G	A	131	.	DP=10;VDB=0.0258;AF1=1;AC1=2;DP4=0,0,6,4;MQ=29;FQ=-57	GT:PL:GQ	1/1:164,30,0:57
chr01	126880	.	CTTTTTTTTTTTTTTT	CTTTTTTTTTTTTTTTTT	29.5	.	INDEL;DP=25;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-55.5	GT:PL:GQ	1/1:70,21,0:38
chr01	141030	.	T	A	105	.	DP=13;VDB=0.0959;AF1=1;AC1=2;DP4=0,0,13,0;MQ=28;FQ=-66	GT:PL:GQ	1/1:138,39,0:75
chr01	141135	.	A	T	114	.	DP=21;VDB=0.1016;AF1=1;AC1=2;DP4=0,0,21,0;MQ=29;FQ=-90	GT:PL:GQ	1/1:147,63,0:99
chr01	199811	.	T	G	222	.	DP=32;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,13,19;MQ=60;FQ=-123	GT:PL:GQ	1/1:255,96,0:99
chr01	210818	.	A	T	222	.	DP=31;VDB=0.1007;AF1=1;AC1=2;DP4=1,0,12,18;MQ=25;FQ=-105;PV4=0.42,0.4,1,1	GT:PL:GQ	1/1:255,78,0:99
chr01	230183	.	GGTGTGTG	GGTGTGTGTG	49	.	INDEL;DP=8;VDB=0.0836;AF1=1;AC1=2;DP4=0,0,0,4;MQ=39;FQ=-46.5	GT:PL:GQ	1/1:89,12,0:21
chr02	6440	.	G	C	80	.	DP=13;VDB=0.1111;AF1=1;AC1=2;DP4=0,0,9,4;MQ=20;FQ=-66	GT:PL:GQ	1/1:113,39,0:75
chr02	15101	.	T	G	222	.	DP=31;VDB=0.1043;AF1=1;AC1=2;DP4=1,0,20,10;MQ=60;FQ=-92;PV4=1,1,1,1	GT:PL:GQ	1/1:255,65,0:99
chr02	15510	.	G	T	222	.	DP=30;VDB=0.1043;AF1=1;AC1=2;DP4=0,0,11,19;MQ=60;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
chr02	15518	.	A	G	222	.	DP=31;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,14,17;MQ=60;FQ=-120	GT:PL:GQ	1/1:255,93,0:99
chr02	16380	.	C	T	222	.	DP=24;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,13,11;MQ=60;FQ=-99	GT:PL:GQ	1/1:255,72,0:99
chr02	16392	.	A	G	222	.	DP=30;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,15,15;MQ=60;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
chr02	30012	.	C	T	101	.	DP=29;VDB=0.1114;AF1=1;AC1=2;DP4=0,0,12,17;MQ=13;FQ=-114	GT:PL:GQ	1/1:134,87,0:99
chr02	35485	.	C	T	111	.	DP=20;VDB=0.0944;AF1=1;AC1=2;DP4=0,1,19,0;MQ=28;FQ=-74;PV4=0.05,1,1,1	GT:PL:GQ	1/1:144,47,0:91
chr02	59755	.	T	C	222	.	DP=36;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,18,18;MQ=57;FQ=-135	GT:PL:GQ	1/1:255,108,0:99
chr02	383176	.	CGG	CGGG	214	.	INDEL;DP=23;VDB=0.1016;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-97.5	GT:PL:GQ	1/1:255,63,0:99
chr03	84780	.	A	T	126	.	DP=10;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,0,10;MQ=58;FQ=-57	GT:PL:GQ	1/1:159,30,0:57
chr03	143131	.	T	C	222	.	DP=27;VDB=0.0944;AF1=1;AC1=2;DP4=0,0,15,12;MQ=53;FQ=-108	GT:PL:GQ	1/1:255,81,0:99
chr03	162361	.	T	C	222	.	DP=23;VDB=0.1111;AF1=1;AC1=2;DP4=0,0,11,12;MQ=60;FQ=-96	GT:PL:GQ	1/1:255,69,0:99
chr03	162396	.	G	C	222	.	DP=34;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,13,21;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr03	162640	.	T	G	222	.	DP=29;VDB=0.0872;AF1=1;AC1=2;DP4=0,0,17,12;MQ=60;FQ=-111	GT:PL:GQ	1/1:255,84,0:99
chr03	162694	.	G	A	222	.	DP=28;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,15,13;MQ=60;FQ=-111	GT:PL:GQ	1/1:255,84,0:99
chr03	162712	.	TAAAAAAAAAA	TAAAAAAAAA	39.5	.	INDEL;DP=30;VDB=0.0944;AF1=1;AC1=2;DP4=0,0,14,9;MQ=60;FQ=-104	GT:PL:GQ	1/1:80,69,0:99
chr03	163059	.	T	C	222	.	DP=29;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,17,12;MQ=60;FQ=-114	GT:PL:GQ	1/1:255,87,0:99
chr03	163163	.	GAAAAAAAAA	GAAAAAAAAAA	52.5	.	INDEL;DP=33;VDB=0.1036;AF1=1;AC1=2;DP4=1,0,8,11;MQ=60;FQ=-80.5;PV4=0.45,1,1,0.2	GT:PL:GQ	1/1:93,46,0:88
chr04	757631	.	G	C	58	.	DP=15;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,13,2;MQ=15;FQ=-72	GT:PL:GQ	1/1:91,45,0:87
chr04	783598	.	G	A	222	.	DP=36;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,15,21;MQ=60;FQ=-135	GT:PL:GQ	1/1:255,108,0:99
chr04	864219	.	A	G	222	.	DP=31;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,15,16;MQ=60;FQ=-120	GT:PL:GQ	1/1:255,93,0:99
chr04	1253397	.	T	C	222	.	DP=42;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,18,24;MQ=60;FQ=-153	GT:PL:GQ	1/1:255,126,0:99
chr04	1402305	.	C	T	222	.	DP=39;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,20,19;MQ=57;FQ=-144	GT:PL:GQ	1/1:255,117,0:99
chr04	1433710	.	A	T	222	.	DP=37;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,17,20;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr04	1515034	.	TAAAAAAAAAAA	TAAAAAAAAAA	25.5	.	INDEL;DP=30;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-94.5	GT:PL:GQ	1/1:66,60,0:82
chr04	1524974	.	A	G	219	.	DP=33;VDB=0.1040;AF1=1;AC1=2;DP4=0,0,20,13;MQ=25;FQ=-126	GT:PL:GQ	1/1:252,99,0:99
chr04	1525313	.	T	G	114	.	DP=12;VDB=0.0762;AF1=1;AC1=2;DP4=0,0,1,11;MQ=25;FQ=-63	GT:PL:GQ	1/1:147,36,0:69
chr05	48384	.	T	C	222	.	DP=45;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,27,18;MQ=60;FQ=-162	GT:PL:GQ	1/1:255,135,0:99
chr05	154531	.	T	A	222	.	DP=35;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-132	GT:PL:GQ	1/1:255,105,0:99
chr05	352394	.	A	G	222	.	DP=34;VDB=0.1043;AF1=1;AC1=2;DP4=0,0,17,17;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr05	517529	.	T	C	222	.	DP=36;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,19,17;MQ=60;FQ=-135	GT:PL:GQ	1/1:255,108,0:99
chr07	386978	.	C	G	222	.	DP=27;VDB=0.0762;AF1=1;AC1=2;DP4=0,0,15,12;MQ=28;FQ=-108	GT:PL:GQ	1/1:255,81,0:99
chr07	386979	.	G	C	222	.	DP=27;VDB=0.0762;AF1=1;AC1=2;DP4=0,0,15,12;MQ=28;FQ=-108	GT:PL:GQ	1/1:255,81,0:99
chr07	401674	.	C	A	179	.	DP=12;VDB=0.0559;AF1=1;AC1=2;DP4=0,0,4,8;MQ=28;FQ=-63	GT:PL:GQ	1/1:212,36,0:69
chr08	85508	.	TTATATATAT	TTATATAT	139	.	INDEL;DP=13;VDB=0.0959;AF1=1;AC1=2;DP4=0,0,2,3;MQ=50;FQ=-49.5	GT:PL:GQ	1/1:179,15,0:27
chr08	417054	.	G	A	222	.	DP=27;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,13,14;MQ=60;FQ=-108	GT:PL:GQ	1/1:255,81,0:99
chr08	499958	.	C	T	222	.	DP=47;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,27,20;MQ=60;FQ=-168	GT:PL:GQ	1/1:255,141,0:99
chr08	511255	.	C	T	222	.	DP=35;VDB=0.1040;AF1=1;AC1=2;DP4=0,0,21,14;MQ=60;FQ=-132	GT:PL:GQ	1/1:255,105,0:99
chr08	524447	.	C	G	222	.	DP=30;VDB=0.0839;AF1=1;AC1=2;DP4=0,0,13,17;MQ=60;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
chr09	39373	.	TAAAAAAAAAAA	TAAAAAAAAAAAA	31.5	.	INDEL;DP=36;VDB=0.1040;AF1=1;AC1=2;DP4=0,1,12,12;MQ=60;FQ=-92.5;PV4=1,1,1,1	GT:PL:GQ	1/1:72,58,0:86
chr09	105433	.	AAATAATAAT	AAATAATAATAAT	152	.	INDEL;DP=20;VDB=0.0938;AF1=1;AC1=2;DP4=0,0,4,1;MQ=54;FQ=-49.5	GT:PL:GQ	1/1:192,15,0:27
chr09	254003	.	TAAAAAAAAAAAAAAA	TAAAAAAAAAAAAAA	21.5	.	INDEL;DP=36;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,8,11;MQ=60;FQ=-91.5	GT:PL:GQ	1/1:62,57,0:75
chr09	318694	.	T	A	222	.	DP=34;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,15,19;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr10	97478	.	G	A	222	.	DP=30;VDB=0.1111;AF1=1;AC1=2;DP4=0,0,17,13;MQ=60;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
chr10	199170	.	A	C	117	.	DP=15;VDB=0.0762;AF1=1;AC1=2;DP4=0,0,13,2;MQ=26;FQ=-72	GT:PL:GQ	1/1:150,45,0:87
chr10	740238	.	T	C	104	.	DP=15;VDB=0.1016;AF1=1;AC1=2;DP4=0,0,14,1;MQ=25;FQ=-72	GT:PL:GQ	1/1:137,45,0:87
chr11	68454	.	G	GCC	214	.	INDEL;DP=17;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-70.5	GT:PL:GQ	1/1:255,36,0:69
chr11	68468	.	T	TG	214	.	INDEL;DP=20;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,10,8;MQ=60;FQ=-88.5	GT:PL:GQ	1/1:255,54,0:99
chr11	666556	.	GT	G	214	.	INDEL;DP=23;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,11,10;MQ=50;FQ=-97.5	GT:PL:GQ	1/1:255,63,0:99
chr12	187137	.	ATTT	ATT	214	.	INDEL;DP=34;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-122	GT:PL:GQ	1/1:255,87,0:99
chr12	291384	.	A	G	222	.	DP=37;VDB=0.1114;AF1=1;AC1=2;DP4=0,0,21,16;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr12	291386	.	A	G	222	.	DP=37;VDB=0.1114;AF1=1;AC1=2;DP4=0,0,21,16;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr12	528749	.	T	A	222	.	DP=43;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,21,22;MQ=60;FQ=-156	GT:PL:GQ	1/1:255,129,0:99
chr12	725936	.	G	A	222	.	DP=37;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,21,16;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr12	734703	.	T	A	134	.	DP=12;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,12,0;MQ=55;FQ=-63	GT:PL:GQ	1/1:167,36,0:69
chr12	828903	.	C	T	222	.	DP=39;VDB=0.1114;AF1=1;AC1=2;DP4=0,0,20,19;MQ=60;FQ=-144	GT:PL:GQ	1/1:255,117,0:99
chr12	1039435	.	T	A	222	.	DP=32;VDB=0.1043;AF1=1;AC1=2;DP4=0,0,19,13;MQ=60;FQ=-123	GT:PL:GQ	1/1:255,96,0:99
chr13	34473	.	T	G	222	.	DP=33;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,18,15;MQ=60;FQ=-126	GT:PL:GQ	1/1:255,99,0:99
chr13	65927	.	CTGTTGTTGTTGTTGTTGTTGTTGTTGTT	CTGTTGTTGTTGTTGTTGTTGTTGTT	214	.	INDEL;DP=29;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,3,5;MQ=60;FQ=-58.5	GT:PL:GQ	1/1:255,24,0:45
chr13	325905	.	T	A	222	.	DP=28;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,15,13;MQ=60;FQ=-111	GT:PL:GQ	1/1:255,84,0:99
chr13	448333	.	G	A	222	.	DP=38;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,19,19;MQ=60;FQ=-141	GT:PL:GQ	1/1:255,114,0:99
chr13	448334	.	A	G	222	.	DP=37;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,19,18;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr13	630505	.	A	G	222	.	DP=29;VDB=0.1114;AF1=1;AC1=2;DP4=0,0,13,16;MQ=60;FQ=-114	GT:PL:GQ	1/1:255,87,0:99
chr13	672129	.	T	C	222	.	DP=36;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,19,17;MQ=60;FQ=-135	GT:PL:GQ	1/1:255,108,0:99
chr13	680936	.	T	C	222	.	DP=37;VDB=0.1040;AF1=1;AC1=2;DP4=0,0,17,20;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr13	680940	.	C	T	222	.	DP=34;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,14,20;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr13	809198	.	A	G	222	.	DP=40;VDB=0.0944;AF1=1;AC1=2;DP4=0,0,23,17;MQ=60;FQ=-147	GT:PL:GQ	1/1:255,120,0:99
chr13	924341	.	G	T	126	.	DP=11;VDB=0.0690;AF1=1;AC1=2;DP4=0,1,1,9;MQ=39;FQ=-50;PV4=1,0.38,1,0.42	GT:PL:GQ	1/1:159,23,0:43
chr14	312328	.	AACGACGACG	AACGACG	215	.	INDEL;DP=14;VDB=0.0948;AF1=1;AC1=2;DP4=0,0,3,3;MQ=60;FQ=-52.5	GT:PL:GQ	1/1:255,18,0:33
chr14	377887	.	G	T	222	.	DP=33;VDB=0.1007;AF1=1;AC1=2;DP4=0,0,21,12;MQ=60;FQ=-126	GT:PL:GQ	1/1:255,99,0:99
chr14	439397	.	GTTTTTT	GTTTTTTT	128	.	INDEL;DP=28;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,10,15;MQ=60;FQ=-110	GT:PL:GQ	1/1:169,75,0:99
chr14	471767	.	A	G	222	.	DP=26;VDB=0.0762;AF1=1;AC1=2;DP4=0,0,14,12;MQ=60;FQ=-105	GT:PL:GQ	1/1:255,78,0:99
chr15	50002	.	C	T	222	.	DP=18;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,8,10;MQ=60;FQ=-81	GT:PL:GQ	1/1:255,54,0:99
chr15	50010	.	A	T	222	.	DP=15;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72	GT:PL:GQ	1/1:255,45,0:87
chr15	50012	.	C	T	222	.	DP=14;VDB=0.0803;AF1=1;AC1=2;DP4=0,0,8,6;MQ=60;FQ=-69	GT:PL:GQ	1/1:255,42,0:81
chr15	60240	.	C	T	210	.	DP=17;VDB=0.0701;AF1=1;AC1=2;DP4=0,0,2,15;MQ=57;FQ=-78	GT:PL:GQ	1/1:243,51,0:99
chr15	79297	.	C	G	222	.	DP=14;VDB=0.0499;AF1=1;AC1=2;DP4=0,0,10,4;MQ=60;FQ=-69	GT:PL:GQ	1/1:255,42,0:81
chr15	79304	.	A	T	142	.	DP=8;VDB=0.0446;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51	GT:PL:GQ	1/1:175,24,0:45
chr15	79305	.	T	A	178	.	DP=10;VDB=0.0391;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-57	GT:PL:GQ	1/1:211,30,0:57
chr15	773264	.	G	C	222	.	DP=34;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,18,16;MQ=60;FQ=-129	GT:PL:GQ	1/1:255,102,0:99
chr16	191944	.	C	T	222	.	DP=31;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,15,16;MQ=60;FQ=-120	GT:PL:GQ	1/1:255,93,0:99
chr16	667520	.	T	G	222	.	DP=24;VDB=0.1091;AF1=1;AC1=2;DP4=0,0,8,16;MQ=60;FQ=-99	GT:PL:GQ	1/1:255,72,0:99
chr16	677102	.	A	G	222	.	DP=37;VDB=0.0944;AF1=1;AC1=2;DP4=0,0,18,19;MQ=60;FQ=-138	GT:PL:GQ	1/1:255,111,0:99
chr16	759400	.	T	G	222	.	DP=36;VDB=0.0938;AF1=1;AC1=2;DP4=0,0,20,16;MQ=60;FQ=-135	GT:PL:GQ	1/1:255,108,0:99
chr16	890346	.	T	A	222	.	DP=30;VDB=0.1111;AF1=1;AC1=2;DP4=0,0,20,10;MQ=60;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
2-micron	5583	.	G	A	222	.	DP=80;VDB=0.0985;AF1=1;AC1=2;DP4=0,0,40,40;MQ=60;FQ=-268	GT:PL:GQ	1/1:255,241,0:99
chrmt	20345	.	GAAA	GAA	214	.	INDEL;DP=67;VDB=0.0872;AF1=1;AC1=2;DP4=0,0,28,28;MQ=60;FQ=-204	GT:PL:GQ	1/1:255,169,0:99
chrmt	20934	.	T	G	222	.	DP=73;VDB=0.1028;AF1=1;AC1=2;DP4=0,0,37,36;MQ=60;FQ=-247	GT:PL:GQ	1/1:255,220,0:99
chrmt	33618	.	T	TTC	214	.	INDEL;DP=40;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,13,23;MQ=59;FQ=-143	GT:PL:GQ	1/1:255,108,0:99
chrmt	33743	.	T	A	222	.	DP=25;VDB=0.1114;AF1=1;AC1=2;DP4=0,0,15,10;MQ=60;FQ=-102	GT:PL:GQ	1/1:255,75,0:99
chrmt	39517	.	G	T	222	.	DP=69;VDB=0.1064;AF1=1;AC1=2;DP4=0,0,35,34;MQ=60;FQ=-235	GT:PL:GQ	1/1:255,208,0:99
chrmt	43084	.	ATTTTTTTT	ATTTTTTTTT	63.5	.	INDEL;DP=37;VDB=0.1063;AF1=1;AC1=2;DP4=0,0,15,11;MQ=60;FQ=-113	GT:PL:GQ	1/1:104,78,0:99
chrmt	44795	.	ATTTTTTTT	ATTTTTTTTT	73.5	.	INDEL;DP=29;VDB=0.1043;AF1=1;AC1=2;DP4=0,0,8,14;MQ=56;FQ=-101	GT:PL:GQ	1/1:114,66,0:99
chrmt	73114	.	AGGGGGG	AGGGGG	31.5	.	INDEL;DP=16;VDB=0.0626;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-61.5	GT:PL:GQ	1/1:72,27,0:50
chrmt	82507	.	T	A	222	.	DP=36;VDB=0.1043;AF1=1;AC1=2;DP4=0,0,19,17;MQ=48;FQ=-135	GT:PL:GQ	1/1:255,108,0:99