##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 23:14:32 PST 2014",Epoch=1389770072639,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/BY4741/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BY4741 chrI 12529 . A G 794.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.132;DP=155;Dels=0.00;FS=16.877;HaplotypeScore=3.4557;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-0.583;QD=5.12;ReadPosRankSum=-3.218;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:116,39:155:99:824,0,3691 chrI 12620 . T C 1223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DP=321;Dels=0.00;FS=3.420;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=51.74;MQ0=3;MQRankSum=-1.011;QD=3.81;ReadPosRankSum=-1.500;SB=-8.360e+02 GT:AD:DP:GQ:PL 0/1:227,94:321:99:1253,0,6046 chrI 12690 . A T 853.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DP=523;Dels=0.00;FS=0.407;HaplotypeScore=6.5508;MLEAC=1;MLEAF=0.500;MQ=51.39;MQ0=14;MQRankSum=-4.746;QD=1.63;ReadPosRankSum=-0.735;SB=-5.980e+02 GT:AD:DP:GQ:PL 0/1:410,111:523:99:883,0,10832 chrI 12716 . C T 973.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=490;Dels=0.00;FS=14.247;HaplotypeScore=37.0003;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=12;MQRankSum=0.283;QD=1.99;ReadPosRankSum=-3.249;SB=-4.320e+02 GT:AD:DP:GQ:PL 0/1:405,85:490:99:1003,0,10368 chrI 12764 . T C 738.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.322;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=1;MQRankSum=0.504;QD=2.37;ReadPosRankSum=-2.471;SB=-3.820e+02 GT:AD:DP:GQ:PL 0/1:248,62:311:99:768,0,7212 chrI 23742 . T A 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.432;DP=70;Dels=0.00;FS=135.952;HaplotypeScore=26.3406;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-4.178;QD=1.00;ReadPosRankSum=-4.603;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:47,22:70:99:100,0,505 chrI 25340 . C A 3273.01 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=12;QD=25.77;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3273,277,0 chrI 25488 . G A 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=9.323;HaplotypeScore=17.5066;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=2;MQRankSum=2.518;QD=25.23;ReadPosRankSum=0.552;SB=-5.835e+02 GT:AD:DP:GQ:PL 1/1:11,86:97:99:2480,222,0 chrI 25497 . G A 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=17.8055;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=2;MQRankSum=0.484;QD=23.55;ReadPosRankSum=1.337;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:5,79:85:99:2035,186,0 chrI 25506 . C T 1302 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=16.4305;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;MQRankSum=1.456;QD=21.34;ReadPosRankSum=1.157;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:5,56:61:99:1335,126,0 chrI 25509 . G A 1140 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.351;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=13.8482;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=2;MQRankSum=1.251;QD=18.10;ReadPosRankSum=0.150;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1173,111,0 chrI 25512 . T G 1008 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.098;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=13.0596;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=3;MQRankSum=1.983;QD=16.26;ReadPosRankSum=2.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,54:62:99:1041,102,0 chrI 25515 . A G 1037 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=12.2709;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=3;MQRankSum=2.022;QD=15.48;ReadPosRankSum=2.452;SB=-6.502e-03 GT:AD:DP:GQ:PL 1/1:7,60:67:99:1070,105,0 chrI 25536 . G A 1068 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.317;DP=79;Dels=0.00;FS=58.030;HaplotypeScore=12.9001;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=12;MQRankSum=3.231;QD=13.52;ReadPosRankSum=2.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,64:79:99:1101,108,0 chrI 25542 . A G 930 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.101;DP=90;Dels=0.00;FS=53.134;HaplotypeScore=10.4893;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=14;MQRankSum=3.146;QD=10.33;ReadPosRankSum=1.794;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:15,71:90:69:963,69,0 chrI 25560 . G A 1712 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.150;DP=111;Dels=0.00;FS=52.116;HaplotypeScore=15.3056;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=21;MQRankSum=2.741;QD=15.42;ReadPosRankSum=-0.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,88:111:99:1745,165,0 chrI 25584 . A G 1958 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.559;DP=128;Dels=0.00;FS=65.578;HaplotypeScore=10.1565;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=30;MQRankSum=3.313;QD=15.30;ReadPosRankSum=-2.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,99:128:99:1991,186,0 chrI 25596 . G A 328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=136;Dels=0.00;FS=4.977;HaplotypeScore=23.6938;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=33;MQRankSum=1.325;QD=2.41;ReadPosRankSum=-0.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,30:136:99:358,0,1373 chrI 25599 . G A 328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DP=140;Dels=0.00;FS=7.542;HaplotypeScore=18.7022;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=38;MQRankSum=0.694;QD=2.34;ReadPosRankSum=-1.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,30:140:99:358,0,1379 chrI 25605 . C T 284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DP=138;Dels=0.00;FS=4.671;HaplotypeScore=18.0988;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=42;MQRankSum=0.018;QD=2.06;ReadPosRankSum=1.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,21:138:99:314,0,1393 chrI 25608 . A T 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=134;Dels=0.00;FS=4.716;HaplotypeScore=10.0796;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=42;MQRankSum=0.444;QD=1.78;ReadPosRankSum=2.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,19:134:99:269,0,1362 chrI 25611 . G A 1273.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=130;Dels=0.00;FS=38.753;HaplotypeScore=8.1079;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=45;MQRankSum=2.561;QD=9.79;ReadPosRankSum=-0.978;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,63:130:99:1303,0,282 chrI 25620 . G T 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;DP=120;Dels=0.00;FS=7.197;HaplotypeScore=13.0771;MLEAC=1;MLEAF=0.500;MQ=21.54;MQ0=44;MQRankSum=0.110;QD=1.67;ReadPosRankSum=2.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,16:120:99:230,0,1216 chrI 25623 . G A 1052.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.581;DP=114;Dels=0.00;FS=49.413;HaplotypeScore=13.0771;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=42;MQRankSum=3.915;QD=9.23;ReadPosRankSum=1.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,46:114:99:1082,0,245 chrI 25632 . A G 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;DP=115;Dels=0.00;FS=12.416;HaplotypeScore=10.2962;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=42;MQRankSum=0.711;QD=2.12;ReadPosRankSum=0.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,17:115:99:274,0,1064 chrI 25644 . A G 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DP=126;Dels=0.00;FS=21.936;HaplotypeScore=21.0318;MLEAC=1;MLEAF=0.500;MQ=16.92;MQ0=65;MQRankSum=2.255;QD=0.96;ReadPosRankSum=-0.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,14:126:99:151,0,702 chrI 25647 . G C 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;DP=129;Dels=0.00;FS=22.311;HaplotypeScore=32.3904;MLEAC=1;MLEAF=0.500;MQ=16.46;MQ0=69;MQRankSum=1.761;QD=0.81;ReadPosRankSum=-0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,12:129:99:134,0,674 chrI 25650 . G A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;DP=118;Dels=0.00;FS=27.540;HaplotypeScore=51.4452;MLEAC=1;MLEAF=0.500;MQ=15.39;MQ0=66;MQRankSum=2.325;QD=0.88;ReadPosRankSum=-2.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,13:118:99:134,0,469 chrI 25653 . G T 164.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=107;Dels=0.00;FS=110.545;HaplotypeScore=51.6433;MLEAC=2;MLEAF=1.00;MQ=12.25;MQ0=67;MQRankSum=5.369;QD=1.53;ReadPosRankSum=-0.693;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:89,18:107:18:197,18,0 chrI 25654 . C A 166.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.546;DP=105;Dels=0.00;FS=73.045;HaplotypeScore=51.6433;MLEAC=2;MLEAF=1.00;MQ=12.37;MQ0=65;MQRankSum=4.287;QD=1.58;ReadPosRankSum=-2.198;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:87,9:105:18:199,18,0 chrI 25677 . A G,T 183.12 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.435;DP=108;Dels=0.00;FS=25.119;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=9.25;MQ0=75;MQRankSum=4.345;QD=1.70;ReadPosRankSum=-2.931;SB=0.098 GT:AD:DP:GQ:PL 1/2:99,7,2:108:43:243,61,43,183,0,177 chrI 25681 . C T 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;DP=107;Dels=0.00;FS=12.483;HaplotypeScore=7.9866;MLEAC=1;MLEAF=0.500;MQ=8.86;MQ0=75;MQRankSum=1.596;QD=0.15;ReadPosRankSum=0.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,2:107:46:46,0,146 chrI 25685 . T C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DP=106;Dels=0.00;FS=14.914;HaplotypeScore=9.9832;MLEAC=1;MLEAF=0.500;MQ=8.04;MQ0=75;MQRankSum=2.131;QD=0.18;ReadPosRankSum=-0.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,2:106:49:49,0,116 chrI 25686 . G A 67.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.543;DP=102;Dels=0.00;FS=29.133;HaplotypeScore=3.9933;MLEAC=2;MLEAF=1.00;MQ=6.52;MQ0=74;MQRankSum=1.543;QD=0.67;ReadPosRankSum=-1.609;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:97,5:102:9:100,9,0 chrI 25694 . C T 28.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=107;Dels=0.00;FS=21.004;HaplotypeScore=2.9950;MLEAC=1;MLEAF=0.500;MQ=6.42;MQ0=79;MQRankSum=2.275;QD=0.26;ReadPosRankSum=-0.937;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,2:107:24:58,0,24 chrI 25710 . A T 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.926;DP=99;Dels=0.00;FS=20.348;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.89;MQ0=73;MQRankSum=0.883;QD=0.36;ReadPosRankSum=-2.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:96,3:99:6:67,6,0 chrI 25713 . G A 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;DP=95;Dels=0.00;FS=24.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.01;MQ0=70;MQRankSum=2.254;QD=0.38;ReadPosRankSum=-1.953;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:93,2:95:6:67,6,0 chrI 25722 . A G 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.079;DP=100;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.72;MQ0=80;MQRankSum=2.205;QD=0.36;ReadPosRankSum=-2.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:97,2:100:6:67,6,0 chrI 26106 . A G 67.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=71;Dels=0.00;FS=7.782;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=8.03;MQ0=62;MQRankSum=2.219;QD=0.96;ReadPosRankSum=-2.219;SB=2.06 GT:AD:DP:GQ:PL 1/1:66,5:71:9:100,9,0 chrI 26115 . C T 66.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;DP=69;Dels=0.00;FS=7.782;HaplotypeScore=4.4038;MLEAC=2;MLEAF=1.00;MQ=8.14;MQ0=60;MQRankSum=1.159;QD=0.97;ReadPosRankSum=-1.881;SB=2.10 GT:AD:DP:GQ:PL 1/1:64,5:69:9:99,9,0 chrI 26117 . A C 30.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.881;DP=69;Dels=0.00;FS=7.782;HaplotypeScore=4.4038;MLEAC=2;MLEAF=1.00;MQ=8.14;MQ0=60;MQRankSum=1.159;QD=0.45;ReadPosRankSum=-1.652;SB=1.25 GT:AD:DP:GQ:PL 1/1:64,5:69:6:62,6,0 chrI 26127 . A G 58.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=67;Dels=0.00;FS=3.310;HaplotypeScore=4.1985;MLEAC=1;MLEAF=0.500;MQ=9.49;MQ0=57;MQRankSum=2.383;QD=0.87;ReadPosRankSum=1.568;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:63,4:67:21:88,0,21 chrI 26130 . G A 58.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=65;Dels=0.00;FS=6.264;HaplotypeScore=7.0664;MLEAC=1;MLEAF=0.500;MQ=9.70;MQ0=54;MQRankSum=1.398;QD=0.89;ReadPosRankSum=2.037;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:61,4:65:21:88,0,21 chrI 26135 . C T 58.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=65;Dels=0.00;FS=6.818;HaplotypeScore=11.3933;MLEAC=1;MLEAF=0.500;MQ=9.76;MQ0=53;MQRankSum=2.359;QD=0.89;ReadPosRankSum=2.637;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:61,4:65:21:88,0,21 chrI 26136 . G A 101.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DP=64;Dels=0.00;FS=10.792;HaplotypeScore=24.4862;MLEAC=2;MLEAF=1.00;MQ=9.15;MQ0=53;MQRankSum=2.054;QD=1.59;ReadPosRankSum=1.203;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:55,6:64:12:134,12,0 chrI 26139 . G A 101.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;DP=65;Dels=0.00;FS=21.553;HaplotypeScore=24.1563;MLEAC=2;MLEAF=1.00;MQ=9.99;MQ0=52;MQRankSum=2.927;QD=1.56;ReadPosRankSum=1.092;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:57,8:65:12:134,12,0 chrI 26148 . A T 58.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DP=59;Dels=0.00;FS=3.424;HaplotypeScore=16.1919;MLEAC=1;MLEAF=0.500;MQ=10.56;MQ0=45;MQRankSum=2.359;QD=0.98;ReadPosRankSum=0.717;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:51,5:59:21:88,0,21 chrI 26160 . G T 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=63;Dels=0.00;FS=18.921;HaplotypeScore=6.6740;MLEAC=1;MLEAF=0.500;MQ=11.29;MQ0=44;MQRankSum=2.493;QD=0.87;ReadPosRankSum=1.310;SB=-6.691e-03 GT:AD:DP:GQ:PL 0/1:56,7:63:41:85,0,41 chrI 26163 . A G 89.34 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;DP=50;Dels=0.00;FS=31.460;HaplotypeScore=11.8802;MLEAC=1;MLEAF=0.500;MQ=12.70;MQ0=31;MQRankSum=3.388;QD=1.79;ReadPosRankSum=1.919;SB=-3.314e+00 GT:AD:DP:GQ:PL 0/1:40,10:50:8:119,0,8 chrI 26169 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=43;Dels=0.00;FS=17.129;HaplotypeScore=12.7966;MLEAC=1;MLEAF=0.500;MQ=15.45;MQ0=20;MQRankSum=1.840;QD=1.14;ReadPosRankSum=1.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,8:43:79:79,0,86 chrI 26171 . T C 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;DP=41;Dels=0.00;FS=40.373;HaplotypeScore=35.2488;MLEAC=1;MLEAF=0.500;MQ=15.82;MQ0=18;MQRankSum=3.008;QD=1.34;ReadPosRankSum=0.651;SB=-3.002e+00 GT:AD:DP:GQ:PL 0/1:28,13:41:29:85,0,29 chrI 26173 . T G 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;DP=48;Dels=0.00;FS=40.373;HaplotypeScore=35.2488;MLEAC=1;MLEAF=0.500;MQ=14.62;MQ0=25;MQRankSum=3.504;QD=1.15;ReadPosRankSum=0.279;SB=-3.011e+00 GT:AD:DP:GQ:PL 0/1:35,13:48:29:85,0,29 chrI 26181 . C T 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;DP=59;Dels=0.00;FS=20.498;HaplotypeScore=27.1666;MLEAC=1;MLEAF=0.500;MQ=15.78;MQ0=30;MQRankSum=1.970;QD=2.39;ReadPosRankSum=-1.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,12:59:81:171,0,81 chrI 26184 . A G 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;DP=63;Dels=0.00;FS=24.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.73;MQ0=32;MQRankSum=1.982;QD=2.24;ReadPosRankSum=-0.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,13:63:81:171,0,81 chrI 26187 . T C 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.303;DP=70;Dels=0.00;FS=24.441;HaplotypeScore=9.7895;MLEAC=1;MLEAF=0.500;MQ=14.92;MQ0=39;MQRankSum=2.382;QD=2.00;ReadPosRankSum=-0.901;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,13:70:81:170,0,81 chrI 26221 . C T 119.64 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;DP=130;Dels=0.00;FS=47.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.36;MQ0=104;MQRankSum=3.633;QD=0.92;ReadPosRankSum=1.505;SB=-3.650e+00 GT:AD:DP:GQ:PL 0/1:114,15:130:5:149,0,5 chrI 26225 . T C 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=146;Dels=0.00;FS=45.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.50;MQ0=121;MQRankSum=3.257;QD=0.59;ReadPosRankSum=2.053;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:132,14:146:26:116,0,26 chrI 26226 . G A 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;DP=152;Dels=0.00;FS=45.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.33;MQ0=127;MQRankSum=3.367;QD=0.57;ReadPosRankSum=1.889;SB=-3.005e+00 GT:AD:DP:GQ:PL 0/1:137,14:152:26:116,0,26 chrI 26331 . G A 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;DP=318;Dels=0.00;FS=4.412;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=11.17;MQ0=179;MQRankSum=1.790;QD=1.15;ReadPosRankSum=-2.428;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:255,63:318:99:397,0,1344 chrI 26412 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.66;MQ0=64;QD=0.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:6:43,6,0 chrI 26765 . T C 151.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;DP=49;Dels=0.00;FS=16.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.05;MQ0=39;MQRankSum=1.733;QD=3.09;ReadPosRankSum=0.480;SB=-4.435e+00 GT:AD:DP:GQ:PL 0/1:41,8:49:1:180,0,1 chrI 26766 . G A 151.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;DP=50;Dels=0.00;FS=16.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.93;MQ0=40;MQRankSum=1.733;QD=3.03;ReadPosRankSum=0.480;SB=-4.435e+00 GT:AD:DP:GQ:PL 0/1:42,8:50:1:180,0,1 chrI 26778 . C T 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=95;Dels=0.00;FS=44.335;HaplotypeScore=5.6269;MLEAC=1;MLEAF=0.500;MQ=11.37;MQ0=76;MQRankSum=3.377;QD=2.76;ReadPosRankSum=1.447;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:80,15:95:45:292,0,45 chrI 26781 . A G 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;DP=98;Dels=0.00;FS=18.512;HaplotypeScore=5.6269;MLEAC=1;MLEAF=0.500;MQ=11.57;MQ0=78;MQRankSum=2.279;QD=1.62;ReadPosRankSum=0.760;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,9:98:99:189,0,175 chrI 26793 . A G 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;DP=104;Dels=0.00;FS=47.345;HaplotypeScore=5.6269;MLEAC=1;MLEAF=0.500;MQ=11.59;MQ0=83;MQRankSum=3.464;QD=2.79;ReadPosRankSum=0.973;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:89,15:104:42:320,0,42 chrI 26799 . G A 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DP=117;Dels=0.00;FS=27.046;HaplotypeScore=5.6269;MLEAC=1;MLEAF=0.500;MQ=11.45;MQ0=93;MQRankSum=1.680;QD=1.33;ReadPosRankSum=0.579;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,11:117:99:186,0,194 chrI 26835 . G A 259.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;DP=145;Dels=0.00;FS=61.905;HaplotypeScore=5.9899;MLEAC=1;MLEAF=0.500;MQ=11.33;MQ0=114;MQRankSum=4.307;QD=1.79;ReadPosRankSum=-0.933;SB=0.101 GT:AD:DP:GQ:PL 0/1:128,17:145:99:289,0,128 chrI 26838 . A G 317.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.644;DP=154;Dels=0.00;FS=81.496;HaplotypeScore=9.9832;MLEAC=1;MLEAF=0.500;MQ=11.00;MQ0=123;MQRankSum=4.603;QD=2.06;ReadPosRankSum=-1.480;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:135,19:154:92:347,0,92 chrI 26839 . A G 284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.426;DP=156;Dels=0.00;FS=61.905;HaplotypeScore=9.9832;MLEAC=1;MLEAF=0.500;MQ=10.93;MQ0=125;MQRankSum=4.148;QD=1.82;ReadPosRankSum=-1.528;SB=0.101 GT:AD:DP:GQ:PL 0/1:139,17:156:99:314,0,125 chrI 26923 . C G 214.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=97;Dels=0.00;FS=36.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.87;MQ0=82;MQRankSum=3.005;QD=2.21;ReadPosRankSum=-2.770;SB=-3.211e+00 GT:AD:DP:GQ:PL 0/1:87,10:97:10:244,0,10 chrI 26931 . A G 493.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;DP=117;Dels=0.00;FS=20.801;HaplotypeScore=15.8127;MLEAC=1;MLEAF=0.500;MQ=15.27;MQ0=78;MQRankSum=0.969;QD=4.21;ReadPosRankSum=1.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,20:117:90:523,0,90 chrI 26937 . G A 188.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DP=127;Dels=0.00;FS=11.504;HaplotypeScore=23.5143;MLEAC=1;MLEAF=0.500;MQ=16.96;MQ0=77;MQRankSum=1.699;QD=1.48;ReadPosRankSum=-4.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,19:127:99:218,0,660 chrI 26940 . A G 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.991;DP=118;Dels=0.00;FS=11.274;HaplotypeScore=23.5143;MLEAC=1;MLEAF=0.500;MQ=17.86;MQ0=66;MQRankSum=1.862;QD=1.64;ReadPosRankSum=-3.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,19:118:99:223,0,709 chrI 26949 . G A 634.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.787;DP=119;Dels=0.00;FS=16.206;HaplotypeScore=9.4886;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=58;MQRankSum=2.012;QD=5.33;ReadPosRankSum=3.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,31:119:99:664,0,388 chrI 26954 . A T 586.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;DP=120;Dels=0.00;FS=16.931;HaplotypeScore=8.8852;MLEAC=1;MLEAF=0.500;MQ=19.77;MQ0=57;MQRankSum=0.805;QD=4.88;ReadPosRankSum=2.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,33:120:99:616,0,394 chrI 26958 . G T 583.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=122;Dels=0.00;FS=13.372;HaplotypeScore=7.8869;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=57;MQRankSum=1.259;QD=4.78;ReadPosRankSum=2.470;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,33:122:99:613,0,424 chrI 26961 . A G 567.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=121;Dels=0.00;FS=12.705;HaplotypeScore=11.6987;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=52;MQRankSum=1.374;QD=4.69;ReadPosRankSum=2.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,35:121:99:597,0,530 chrI 26964 . A T 593.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DP=126;Dels=0.00;FS=9.401;HaplotypeScore=15.3788;MLEAC=1;MLEAF=0.500;MQ=21.40;MQ0=51;MQRankSum=-0.381;QD=4.71;ReadPosRankSum=2.885;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,36:126:99:623,0,635 chrI 26970 . G A,T 1241.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.181;DP=129;Dels=0.00;FS=22.557;HaplotypeScore=5.4422;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.14;MQ0=49;MQRankSum=2.307;QD=9.62;ReadPosRankSum=0.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:53,33,43:129:99:1301,758,760,484,0,465 chrI 26973 . A G 1533 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.419;DP=127;Dels=0.00;FS=34.997;HaplotypeScore=16.7708;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=47;MQRankSum=2.357;QD=12.07;ReadPosRankSum=0.539;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:49,78:127:99:1566,140,0 chrI 26974 . A G 413.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.153;DP=131;Dels=0.00;FS=2.898;HaplotypeScore=16.7708;MLEAC=1;MLEAF=0.500;MQ=22.26;MQ0=49;MQRankSum=1.078;QD=3.15;ReadPosRankSum=-0.615;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,33:131:99:443,0,849 chrI 26979 . G A 741.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.150;DP=132;Dels=0.00;FS=6.491;HaplotypeScore=12.9590;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=46;MQRankSum=-0.450;QD=5.61;ReadPosRankSum=0.562;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,45:132:99:771,0,660 chrI 26981 . T C 870 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.931;DP=131;Dels=0.00;FS=35.629;HaplotypeScore=12.9439;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=45;MQRankSum=2.278;QD=6.64;ReadPosRankSum=0.158;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:47,84:131:68:903,68,0 chrI 26983 . T G 874 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.705;DP=134;Dels=0.00;FS=35.629;HaplotypeScore=12.9439;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=48;MQRankSum=2.307;QD=6.52;ReadPosRankSum=0.072;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:50,84:134:68:907,68,0 chrI 26991 . C T 811.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.898;DP=153;Dels=0.00;FS=9.271;HaplotypeScore=9.4485;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=42;MQRankSum=0.021;QD=5.30;ReadPosRankSum=0.032;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,56:153:99:841,0,761 chrI 26994 . A G 782.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DP=160;Dels=0.00;FS=6.126;HaplotypeScore=3.9533;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=43;MQRankSum=0.543;QD=4.89;ReadPosRankSum=0.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,57:160:99:812,0,857 chrI 26997 . T C 817.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;DP=174;Dels=0.00;FS=5.989;HaplotypeScore=4.9267;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=45;MQRankSum=1.588;QD=4.70;ReadPosRankSum=1.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,58:174:99:847,0,1204 chrI 27027 . A T 2545 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200;DP=162;Dels=0.00;FS=38.823;HaplotypeScore=11.1492;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=37;MQRankSum=2.410;QD=15.71;ReadPosRankSum=0.129;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:39,123:162:99:2578,238,0 chrI 27031 . C T 1657.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.045;DP=156;Dels=0.00;FS=13.047;HaplotypeScore=11.9625;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=40;MQRankSum=0.237;QD=10.62;ReadPosRankSum=-2.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,90:156:99:1687,0,294 chrI 27035 . T C 2088 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;DP=149;Dels=0.00;FS=52.603;HaplotypeScore=17.3521;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=44;MQRankSum=2.894;QD=14.01;ReadPosRankSum=0.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:47,102:149:99:2121,177,0 chrI 27036 . G A 2096 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;DP=148;Dels=0.00;FS=52.603;HaplotypeScore=17.3521;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=43;MQRankSum=2.855;QD=14.16;ReadPosRankSum=0.971;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:46,102:148:99:2129,177,0 chrI 27044 . C T 2062 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;DP=150;Dels=0.00;FS=15.441;HaplotypeScore=12.7865;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=43;MQRankSum=0.664;QD=13.75;ReadPosRankSum=0.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:47,103:150:99:2095,135,0 chrI 27060 . A T 1554 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=132;Dels=0.00;FS=18.573;HaplotypeScore=25.9438;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=40;MQRankSum=1.684;QD=11.77;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:42,71:132:99:1587,144,0 chrI 27063 . G A 1290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;DP=129;Dels=0.00;FS=12.706;HaplotypeScore=15.7867;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=40;MQRankSum=0.353;QD=10.00;ReadPosRankSum=0.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,68:129:99:1320,0,151 chrI 27066 . G A 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.234;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=15.7867;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=39;MQRankSum=0.988;QD=0.91;ReadPosRankSum=-0.246;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,18:136:99:154,0,1611 chrI 27072 . A G 1373.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=127;Dels=0.00;FS=13.042;HaplotypeScore=16.1817;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=39;MQRankSum=0.453;QD=10.81;ReadPosRankSum=1.429;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,68:127:99:1403,0,229 chrI 27075 . G A 1408.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;DP=124;Dels=0.00;FS=13.883;HaplotypeScore=13.4501;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=37;MQRankSum=0.278;QD=11.35;ReadPosRankSum=1.745;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,69:124:99:1438,0,201 chrI 27080 . C T 1409.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.561;DP=110;Dels=0.00;FS=14.606;HaplotypeScore=73.9591;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=37;MQRankSum=1.114;QD=12.81;ReadPosRankSum=2.067;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,59:110:99:1439,0,204 chrI 27081 . G A,T 1716.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.402;DP=110;Dels=0.00;FS=18.921;HaplotypeScore=4.8101;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.15;MQ0=37;MQRankSum=2.349;QD=15.60;ReadPosRankSum=-0.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:39,60,11:110:99:1776,271,139,1489,0,1478 chrI 27084 . G A 1502.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;DP=114;Dels=0.00;FS=16.691;HaplotypeScore=65.1189;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=34;MQRankSum=0.867;QD=13.18;ReadPosRankSum=1.892;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,68:114:99:1532,0,136 chrI 27089 . T A 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.492;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=49.6773;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=34;MQRankSum=0.533;QD=0.59;ReadPosRankSum=-2.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,9:115:98:98,0,1508 chrI 27090 . T C 891.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DP=114;Dels=0.00;FS=3.859;HaplotypeScore=49.6773;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=34;MQRankSum=-1.614;QD=7.82;ReadPosRankSum=2.783;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:63,51:114:99:921,0,673 chrI 27093 . A T 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;DP=112;Dels=0.00;FS=4.788;HaplotypeScore=24.8694;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=32;MQRankSum=1.068;QD=1.84;ReadPosRankSum=-1.303;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,16:112:99:236,0,1203 chrI 27096 . A G 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=103;Dels=0.00;FS=2.322;HaplotypeScore=6.8483;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=31;MQRankSum=0.294;QD=0.69;ReadPosRankSum=-0.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,13:103:99:101,0,1314 chrI 27099 . T C 1095.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8534;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=29;MQRankSum=0.499;QD=11.41;ReadPosRankSum=1.496;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:42,54:96:99:1125,0,136 chrI 27105 . A G 1292.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;DP=95;Dels=0.00;FS=7.295;HaplotypeScore=3.8783;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=28;MQRankSum=1.674;QD=13.60;ReadPosRankSum=-0.499;SB=-2.212e+02 GT:AD:DP:GQ:PL 1/1:29,58:95:99:1324,108,0 chrI 27126 . T C 2411 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6808;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=15;MQRankSum=0.543;QD=22.32;ReadPosRankSum=0.463;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:17,91:108:99:2444,184,0 chrI 27129 . C G 2460 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.273;DP=104;Dels=0.00;FS=3.867;HaplotypeScore=2.6808;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=9;MQRankSum=1.623;QD=23.65;ReadPosRankSum=1.550;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:9,94:104:99:2493,210,0 chrI 141030 . T A 2930 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=11;QD=28.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2963,268,0 chrI 141135 . A T 3325.01 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=7;QD=31.97;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3325,286,0 chrI 152125 . G T 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.211;DP=147;Dels=0.03;FS=179.566;HaplotypeScore=49.1855;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=1.054;QD=0.44;ReadPosRankSum=-4.258;SB=0.325 GT:AD:DP:GQ:PL 0/1:101,32:143:94:94,0,1392 chrI 163774 . C G 427 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=1;QD=28.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,14:15:42:460,42,0 chrI 188708 . A G 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899;DP=127;Dels=0.00;FS=36.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.28;MQ0=0;MQRankSum=-3.735;QD=1.32;ReadPosRankSum=-0.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,17:127:99:198,0,3364 chrI 188824 . A G 493.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DP=273;Dels=0.00;FS=107.434;HaplotypeScore=2.0321;MLEAC=1;MLEAF=0.500;MQ=45.19;MQ0=13;MQRankSum=-1.198;QD=1.81;ReadPosRankSum=-3.383;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,52:273:99:523,0,6380 chrI 188881 . G C 3445.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=358;Dels=0.00;FS=3.680;HaplotypeScore=4.3614;MLEAC=1;MLEAF=0.500;MQ=47.71;MQ0=19;MQRankSum=-6.865;QD=9.62;ReadPosRankSum=1.625;SB=-1.340e+03 GT:AD:DP:GQ:PL 0/1:212,145:358:99:3445,0,6269 chrI 188939 . A G 3384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.671;DP=344;Dels=0.00;FS=4.378;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=48.40;MQ0=11;MQRankSum=-7.398;QD=9.84;ReadPosRankSum=-0.648;SB=-1.709e+03 GT:AD:DP:GQ:PL 0/1:203,141:344:99:3384,0,6324 chrI 189031 . A G 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=241;Dels=0.00;FS=10.846;HaplotypeScore=3.4296;MLEAC=1;MLEAF=0.500;MQ=51.74;MQ0=12;MQRankSum=-4.656;QD=0.73;ReadPosRankSum=-4.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,36:241:99:205,0,6176 chrI 189245 . A G 370.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506;DP=180;Dels=0.00;FS=39.352;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=-7.312;QD=2.06;ReadPosRankSum=-1.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,33:180:99:400,0,4772 chrI 199811 . T G 7326.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=35.74;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:7326,581,0 chrI 204959 . C G 62.97 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.60;MQ0=37;QD=1.40;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:9:95,9,0 chrI 205050 . C A 53.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=12.83;MQ0=16;QD=2.16;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:86,9,0 chrI 205082 . A G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=74;Dels=0.00;FS=28.682;HaplotypeScore=4.6823;MLEAC=1;MLEAF=0.500;MQ=11.21;MQ0=53;MQRankSum=-0.087;QD=0.47;ReadPosRankSum=-2.182;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:69,5:74:65:65,0,174 chrI 205085 . C T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;DP=79;Dels=0.00;FS=42.134;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=11.94;MQ0=54;MQRankSum=0.827;QD=0.44;ReadPosRankSum=-2.603;SB=0.048 GT:AD:DP:GQ:PL 0/1:71,8:79:65:65,0,173 chrI 205091 . A G 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;DP=91;Dels=0.00;FS=43.285;HaplotypeScore=10.3629;MLEAC=1;MLEAF=0.500;MQ=11.67;MQ0=64;MQRankSum=0.489;QD=0.56;ReadPosRankSum=-2.083;SB=-6.433e-03 GT:AD:DP:GQ:PL 0/1:82,9:91:81:81,0,196 chrI 205097 . C T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;DP=94;Dels=0.00;FS=72.401;HaplotypeScore=6.6138;MLEAC=1;MLEAF=0.500;MQ=11.48;MQ0=67;MQRankSum=0.708;QD=1.13;ReadPosRankSum=-1.683;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:82,12:94:99:136,0,146 chrI 205100 . C T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.050;DP=95;Dels=0.00;FS=72.401;HaplotypeScore=4.6670;MLEAC=1;MLEAF=0.500;MQ=11.42;MQ0=68;MQRankSum=0.659;QD=1.12;ReadPosRankSum=-1.000;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:83,12:95:99:136,0,145 chrI 205101 . G A 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;DP=94;Dels=0.00;FS=72.401;HaplotypeScore=4.6670;MLEAC=1;MLEAF=0.500;MQ=11.48;MQ0=67;MQRankSum=0.268;QD=1.13;ReadPosRankSum=-0.854;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:82,12:94:99:136,0,141 chrI 205106 . C T 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DP=107;Dels=0.00;FS=95.116;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=12.32;MQ0=72;MQRankSum=0.550;QD=1.17;ReadPosRankSum=-1.783;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:87,20:107:99:155,0,141 chrI 205109 . T C 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;DP=112;Dels=0.00;FS=81.894;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=11.83;MQ0=77;MQRankSum=0.917;QD=1.09;ReadPosRankSum=-1.417;SB=-3.011e+00 GT:AD:DP:GQ:PL 0/1:91,21:112:99:152,0,162 chrI 205119 . T G 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;DP=120;Dels=0.00;FS=81.538;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=12.07;MQ0=83;MQRankSum=0.652;QD=1.54;ReadPosRankSum=-0.270;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:96,24:120:99:215,0,131 chrI 205121 . G A 186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;DP=120;Dels=0.00;FS=81.538;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=12.07;MQ0=83;MQRankSum=0.811;QD=1.55;ReadPosRankSum=-0.239;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:96,24:120:99:216,0,131 chrI 205130 . T C 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DP=123;Dels=0.00;FS=83.650;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=13.07;MQ0=79;MQRankSum=1.323;QD=1.91;ReadPosRankSum=0.995;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:93,30:123:99:265,0,125 chrI 205145 . C T 330.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.712;DP=115;Dels=0.00;FS=74.310;HaplotypeScore=2.8735;MLEAC=1;MLEAF=0.500;MQ=13.41;MQ0=72;MQRankSum=1.046;QD=2.87;ReadPosRankSum=1.046;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:80,35:115:39:360,0,39 chrI 205146 . A G 330.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=116;Dels=0.00;FS=74.310;HaplotypeScore=2.8735;MLEAC=1;MLEAF=0.500;MQ=13.35;MQ0=73;MQRankSum=1.046;QD=2.84;ReadPosRankSum=1.181;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:81,35:116:35:360,0,35 chrI 205150 . G A 333.34 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DP=113;Dels=0.00;FS=74.310;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=13.53;MQ0=70;MQRankSum=1.046;QD=2.95;ReadPosRankSum=1.586;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:78,35:113:8:363,0,8 chrI 205163 . A T 136.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.301;DP=92;Dels=0.00;FS=49.151;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.31;MQ0=52;MQRankSum=3.217;QD=1.48;ReadPosRankSum=1.366;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:57,35:92:21:169,21,0 chrI 205184 . A G 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DP=72;Dels=0.00;FS=3.112;HaplotypeScore=2.8658;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=29;MQRankSum=0.352;QD=1.51;ReadPosRankSum=1.713;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,22:72:99:139,0,194 chrI 205187 . T C 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.8658;MLEAC=1;MLEAF=0.500;MQ=17.97;MQ0=23;MQRankSum=0.796;QD=1.13;ReadPosRankSum=1.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,21:64:99:102,0,196 chrI 205190 . G A 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.8658;MLEAC=1;MLEAF=0.500;MQ=18.02;MQ0=21;MQRankSum=1.354;QD=1.52;ReadPosRankSum=-0.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,21:61:99:123,0,162 chrI 205198 . A C 89.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.9296;MLEAC=2;MLEAF=1.00;MQ=17.89;MQ0=18;QD=1.83;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:18,31:49:12:122,12,0 chrI 205200 . A G 89.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.9296;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=12;QD=2.08;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:12,31:43:12:122,12,0 chrI 205202 . C T 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.8591;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=12;MQRankSum=1.250;QD=1.30;ReadPosRankSum=0.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,14:43:86:86,0,173 chrI 205208 . T C 285 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=8.7887;MLEAC=2;MLEAF=1.00;MQ=18.16;MQ0=15;QD=6.33;SB=-8.699e-03 GT:AD:DP:GQ:PL 1/1:15,30:45:36:318,36,0 chrI 205211 . C A 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=8.7887;MLEAC=1;MLEAF=0.500;MQ=17.23;MQ0=20;MQRankSum=1.480;QD=1.20;ReadPosRankSum=-0.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,13:50:90:90,0,113 chrI 205217 . A G 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=17.5773;MLEAC=1;MLEAF=0.500;MQ=16.40;MQ0=19;MQRankSum=-0.892;QD=1.38;ReadPosRankSum=-0.031;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:30,11:45:65:92,0,65 chrI 205220 . C T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=14.6478;MLEAC=1;MLEAF=0.500;MQ=16.19;MQ0=18;MQRankSum=-1.354;QD=2.81;ReadPosRankSum=-0.535;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:27,14:41:59:145,0,59 chrI 205223 . T A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=14.6478;MLEAC=1;MLEAF=0.500;MQ=15.45;MQ0=22;MQRankSum=1.823;QD=0.78;ReadPosRankSum=0.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,9:45:65:65,0,95 chrI 205226 . A G 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=21.5453;MLEAC=1;MLEAF=0.500;MQ=15.38;MQ0=25;MQRankSum=-0.713;QD=1.19;ReadPosRankSum=0.651;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,10:48:87:87,0,144 chrI 205232 . C T 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=46;Dels=0.00;FS=7.202;HaplotypeScore=18.6313;MLEAC=1;MLEAF=0.500;MQ=14.91;MQ0=25;MQRankSum=0.045;QD=2.02;ReadPosRankSum=0.224;SB=0.406 GT:AD:DP:GQ:PL 0/1:29,17:46:61:123,0,61 chrI 205235 . C T 34.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DP=44;Dels=0.00;FS=11.761;HaplotypeScore=13.7300;MLEAC=1;MLEAF=0.500;MQ=14.15;MQ0=26;MQRankSum=-1.504;QD=0.78;ReadPosRankSum=1.504;SB=15.58 GT:AD:DP:GQ:PL 0/1:27,14:44:21:64,0,21 chrI 205236 . G A 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;DP=44;Dels=0.00;FS=3.522;HaplotypeScore=13.7300;MLEAC=1;MLEAF=0.500;MQ=14.15;MQ0=26;MQRankSum=-0.400;QD=0.55;ReadPosRankSum=1.555;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,10:44:54:54,0,71 chrI 205241 . C T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;DP=46;Dels=0.00;FS=4.102;HaplotypeScore=11.7583;MLEAC=1;MLEAF=0.500;MQ=13.84;MQ0=28;MQRankSum=-0.453;QD=0.54;ReadPosRankSum=0.906;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,11:46:55:55,0,71 chrI 205244 . T C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;DP=50;Dels=0.00;FS=3.522;HaplotypeScore=12.7726;MLEAC=1;MLEAF=0.500;MQ=13.27;MQ0=32;MQRankSum=-0.400;QD=0.50;ReadPosRankSum=1.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,10:50:55:55,0,71 chrI 205253 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=12.8446;MLEAC=1;MLEAF=0.500;MQ=12.70;MQ0=32;MQRankSum=1.032;QD=0.22;ReadPosRankSum=0.238;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:46,2:48:40:40,0,62 chrI 205403 . A G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.197;DP=251;Dels=0.00;FS=16.244;HaplotypeScore=3.6706;MLEAC=1;MLEAF=0.500;MQ=7.49;MQ0=195;MQRankSum=-0.328;QD=0.08;ReadPosRankSum=2.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,58:251:50:50,0,279 chrI 205625 . C T 245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.5052;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=96;MQRankSum=3.524;QD=1.18;ReadPosRankSum=-5.356;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,19:207:99:275,0,2299 chrI 205700 . T C 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.864;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6966;MLEAC=1;MLEAF=0.500;MQ=22.30;MQ0=59;MQRankSum=2.197;QD=3.25;ReadPosRankSum=-0.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,28:138:99:478,0,1300 chrI 205811 . C T 1169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DP=268;Dels=0.00;FS=138.591;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=68;MQRankSum=-5.383;QD=4.36;ReadPosRankSum=-4.318;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:176,92:268:99:1199,0,3094 chrI 205829 . T C 1217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.710;DP=270;Dels=0.00;FS=110.820;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=29.59;MQ0=58;MQRankSum=-7.014;QD=4.51;ReadPosRankSum=3.535;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:175,95:270:99:1247,0,3469 chrI 205835 . C T 1235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.262;DP=257;Dels=0.00;FS=92.211;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=30.26;MQ0=51;MQRankSum=-7.152;QD=4.81;ReadPosRankSum=6.295;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:162,95:257:99:1265,0,3255 chrI 205883 . T C 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.527;DP=260;Dels=0.00;FS=82.222;HaplotypeScore=29.4012;MLEAC=1;MLEAF=0.500;MQ=42.00;MQ0=15;MQRankSum=3.505;QD=0.95;ReadPosRankSum=0.963;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:233,27:260:99:277,0,6326 chrI 205886 . T C 946.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;DP=273;Dels=0.00;FS=97.943;HaplotypeScore=28.6526;MLEAC=1;MLEAF=0.500;MQ=42.96;MQ0=5;MQRankSum=-10.072;QD=3.47;ReadPosRankSum=-4.579;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,69:273:99:976,0,6154 chrI 205911 . A G 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;DP=266;Dels=0.00;FS=72.400;HaplotypeScore=23.6373;MLEAC=1;MLEAF=0.500;MQ=46.52;MQ0=1;MQRankSum=2.562;QD=0.77;ReadPosRankSum=6.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,29:266:99:236,0,6768 chrI 205913 . T C 371.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DP=267;Dels=0.00;FS=29.154;HaplotypeScore=17.7327;MLEAC=1;MLEAF=0.500;MQ=46.49;MQ0=1;MQRankSum=-0.045;QD=1.39;ReadPosRankSum=3.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:228,39:267:99:401,0,6513 chrI 205916 . T C 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DP=266;Dels=0.00;FS=55.860;HaplotypeScore=16.8168;MLEAC=1;MLEAF=0.500;MQ=46.52;MQ0=1;MQRankSum=2.207;QD=0.89;ReadPosRankSum=4.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,31:266:99:268,0,6489 chrI 205919 . A T 188.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.094;DP=260;Dels=0.00;FS=70.184;HaplotypeScore=14.2026;MLEAC=1;MLEAF=0.500;MQ=46.98;MQ0=1;MQRankSum=1.508;QD=0.72;ReadPosRankSum=4.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,29:260:99:218,0,6627 chrI 206126 . T C 1555 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4088;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=1;QD=26.81;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1588,153,0 chrI 206129 . A C 1261 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4088;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=1;QD=22.12;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1294,123,0 chrI 206132 . G T 1077 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5767;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=1;QD=26.27;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1110,105,0 chrI 206144 . C T 924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=1;MQRankSum=-0.922;QD=19.25;ReadPosRankSum=1.143;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:66:957,66,0 chrI 206351 . T C 353.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;DP=236;Dels=0.00;FS=55.164;HaplotypeScore=4.8655;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=10;MQRankSum=-3.217;QD=1.50;ReadPosRankSum=-0.054;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,53:236:99:383,0,5123 chrI 206354 . G T 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=236;Dels=0.00;FS=49.786;HaplotypeScore=4.8655;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=10;MQRankSum=-3.076;QD=1.43;ReadPosRankSum=1.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,50:236:99:367,0,5272 chrI 206375 . C T 1146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;DP=250;Dels=0.00;FS=14.326;HaplotypeScore=3.2090;MLEAC=1;MLEAF=0.500;MQ=49.79;MQ0=10;MQRankSum=-2.317;QD=4.58;ReadPosRankSum=1.254;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:173,77:250:99:1176,0,4703 chrI 206462 . T C 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=284;Dels=0.00;FS=2.233;HaplotypeScore=13.3716;MLEAC=1;MLEAF=0.500;MQ=49.52;MQ0=20;MQRankSum=-0.270;QD=0.36;ReadPosRankSum=-3.960;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:231,53:284:99:133,0,6120 chrI 210818 . A T 4209.01 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=13;QD=30.28;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4209,358,0 chrI 211019 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=29.93;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4788,436,0 chrI 225099 . G A 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.372;DP=150;Dels=0.01;FS=124.875;HaplotypeScore=10.7736;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=4;MQRankSum=-2.382;QD=0.59;ReadPosRankSum=-5.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,28:149:99:118,0,520 chrII 796 . T C 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DP=134;Dels=0.00;FS=35.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.63;MQ0=80;MQRankSum=1.159;QD=0.39;ReadPosRankSum=1.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,11:134:82:82,0,590 chrII 1254 . T C 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;DP=169;Dels=0.00;FS=13.817;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=14.19;MQ0=105;MQRankSum=0.860;QD=0.54;ReadPosRankSum=0.028;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:158,11:169:99:122,0,891 chrII 2335 . C A 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.40;MQ0=83;MQRankSum=-0.112;QD=0.71;ReadPosRankSum=-1.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,8:133:99:124,0,828 chrII 2514 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.34;MQ0=135;MQRankSum=0.762;QD=0.09;ReadPosRankSum=-1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,2:144:43:43,0,182 chrII 6440 . G C 3452.01 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=8;QD=27.62;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3452,307,0 chrII 7510 . G A 1370 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=11;QD=20.45;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1403,126,0 chrII 7511 . G A 1369 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=11;QD=19.28;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1402,126,0 chrII 15101 . T G 5068.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=34.71;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:5068,394,0 chrII 15510 . G T 5322.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=34.56;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5322,424,0 chrII 15518 . A G 6102.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=35.89;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:6102,469,0 chrII 16380 . C T 6305.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=35.03;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:6305,475,0 chrII 16392 . A G 6269.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=36.03;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:6269,491,0 chrII 19056 . T G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.076;DP=167;Dels=0.00;FS=136.695;HaplotypeScore=21.2849;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-0.065;QD=0.34;ReadPosRankSum=-4.986;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,61:167:87:87,0,2980 chrII 30012 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=1;QD=18.82;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2310,240,0 chrII 30050 . A G 1838 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=23.22;MQ0=28;QD=13.42;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:4,133:137:99:1871,180,0 chrII 30210 . T C 234.03 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=18;QD=7.55;SB=-1.335e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:24:267,24,0 chrII 30658 . G T 34.77 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.59;MQ0=56;QD=0.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:54,8:62:6:66,6,0 chrII 30660 . T C 32.77 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.59;MQ0=56;QD=0.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:54,8:62:6:64,6,0 chrII 30723 . G A 67.97 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.92;MQ0=30;QD=1.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,9:38:9:100,9,0 chrII 30754 . G A 61.97 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.48;MQ0=22;QD=1.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:20,15:35:9:94,9,0 chrII 30848 . C G 804 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.57;MQ0=45;QD=9.46;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:40,45:85:90:837,90,0 chrII 35485 . C T 1469 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=15;QD=18.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1502,135,0 chrII 59755 . T C 6053.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=38.80;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:6053,454,0 chrII 259764 . C T 2274 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=30.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2307,208,0 chrII 263153 . C T 329 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=29.91;SB=-9.998e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:362,30,0 chrII 265382 . G T 2078 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=31.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2111,192,0 chrII 415782 . C T 208.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.515;DP=115;Dels=0.03;FS=226.191;HaplotypeScore=16.7814;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.492;QD=1.81;ReadPosRankSum=-7.043;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:59,53:112:99:238,0,1236 chrII 561261 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.472;DP=116;Dels=0.00;FS=204.126;HaplotypeScore=23.0686;MLEAC=1;MLEAF=0.500;MQ=53.90;MQ0=0;MQRankSum=-6.977;QD=0.49;ReadPosRankSum=-5.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,27:116:87:87,0,1545 chrII 561274 . C A 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.659;DP=120;Dels=0.00;FS=161.175;HaplotypeScore=6.2786;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=-6.696;QD=0.57;ReadPosRankSum=-6.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,22:120:98:98,0,1899 chrIII 42031 . T A 91.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.981;DP=159;Dels=0.02;FS=267.875;HaplotypeScore=33.8153;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=2;MQRankSum=1.303;QD=0.57;ReadPosRankSum=-8.419;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:84,72:156:99:121,0,418 chrIII 42038 . G A 87.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.529;DP=118;Dels=0.01;FS=251.274;HaplotypeScore=28.0621;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=2;MQRankSum=0.595;QD=0.74;ReadPosRankSum=-7.821;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:76,41:117:99:117,0,462 chrIII 44562 . G A 132.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.237;DP=192;Dels=0.04;FS=310.261;HaplotypeScore=34.7547;MLEAC=1;MLEAF=0.500;MQ=60.78;MQ0=0;MQRankSum=-0.932;QD=0.69;ReadPosRankSum=-7.512;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:149,35:184:99:162,0,508 chrIII 57071 . C A 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DP=165;Dels=0.00;FS=7.801;HaplotypeScore=10.1036;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=0.143;QD=0.58;ReadPosRankSum=-2.331;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:95,70:165:99:125,0,851 chrIII 57085 . C A 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.519;DP=115;Dels=0.00;FS=149.532;HaplotypeScore=9.3331;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-0.681;QD=1.57;ReadPosRankSum=-5.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,28:115:99:211,0,570 chrIII 57239 . C A 191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DP=94;Dels=0.00;FS=98.343;HaplotypeScore=5.1406;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-0.905;QD=2.03;ReadPosRankSum=-4.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,31:94:99:221,0,456 chrIII 84421 . G A 105.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=162;Dels=0.00;FS=138.008;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.82;MQ0=112;MQRankSum=-2.542;QD=0.65;ReadPosRankSum=-1.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:127,35:162:15:138,15,0 chrIII 84780 . A T 1701 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=31.50;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1734,144,0 chrIII 143131 . T C 5115.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.7878;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=36.28;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:5115,400,0 chrIII 148615 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.96;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2541,229,0 chrIII 151628 . A T 194.06 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.24;MQ0=12;QD=6.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,16:28:21:227,21,0 chrIII 151645 . G A 157.13 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.98;MQ0=14;QD=5.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,15:29:18:190,18,0 chrIII 151646 . T C 157.13 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.98;MQ0=14;QD=5.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,15:29:18:190,18,0 chrIII 151787 . A C 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;DP=197;Dels=0.00;FS=19.984;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=52.53;MQ0=0;MQRankSum=-7.670;QD=1.12;ReadPosRankSum=0.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,28:197:99:251,0,5849 chrIII 151809 . T C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DP=200;Dels=0.00;FS=17.851;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.43;MQ0=0;MQRankSum=-7.007;QD=0.09;ReadPosRankSum=-4.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,22:200:47:47,0,6323 chrIII 162361 . T C 6289.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=36.35;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:6289,476,0 chrIII 162396 . G C 5919.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=37.70;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5919,457,0 chrIII 162640 . T G 5766.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=37.20;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:5766,451,0 chrIII 162694 . G A 4652.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=34.98;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4652,355,0 chrIII 163059 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.265;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.577;QD=35.94;ReadPosRankSum=0.192;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:4528,311,0 chrIII 199081 . G A 1180 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=18.30;MQ0=69;QD=8.81;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:33,101:134:99:1213,111,0 chrIII 231031 . C T 214.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.200;DP=186;Dels=0.00;FS=363.834;HaplotypeScore=33.7307;MLEAC=1;MLEAF=0.500;MQ=61.24;MQ0=0;MQRankSum=-0.326;QD=1.15;ReadPosRankSum=-7.078;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:136,50:186:99:244,0,1737 chrIII 277564 . G T 372.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.737;DP=120;Dels=0.00;FS=215.108;HaplotypeScore=1.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.791;QD=3.10;ReadPosRankSum=-8.025;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,35:120:99:402,0,2724 chrIII 294593 . T C 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;DP=178;Dels=0.00;FS=86.329;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-8.061;QD=1.04;ReadPosRankSum=-3.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,27:178:99:215,0,5182 chrIII 294609 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DP=168;Dels=0.00;FS=58.663;HaplotypeScore=3.9688;MLEAC=1;MLEAF=0.500;MQ=55.63;MQ0=0;MQRankSum=-7.295;QD=0.26;ReadPosRankSum=-5.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,21:168:74:74,0,5035 chrIV 13937 . G A 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.44;MQ0=148;MQRankSum=0.584;QD=1.72;ReadPosRankSum=-1.139;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:86,100:186:99:350,0,297 chrIV 43901 . G A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.343;DP=130;Dels=0.03;FS=239.306;HaplotypeScore=14.5730;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=-0.265;QD=1.61;ReadPosRankSum=-8.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,63:126:99:239,0,659 chrIV 126566 . C T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.168;DP=127;Dels=0.03;FS=256.187;HaplotypeScore=31.7030;MLEAC=1;MLEAF=0.500;MQ=55.89;MQ0=0;MQRankSum=1.414;QD=0.14;ReadPosRankSum=-7.697;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:83,40:123:48:48,0,928 chrIV 169939 . G A 367.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800;DP=101;Dels=0.00;FS=109.243;HaplotypeScore=100.7027;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-0.283;QD=3.63;ReadPosRankSum=-4.622;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,82:101:99:397,0,332 chrIV 169943 . G A 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.079;DP=53;Dels=0.00;FS=77.640;HaplotypeScore=13.0907;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=0;MQRankSum=-1.960;QD=2.98;ReadPosRankSum=-3.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,33:53:99:188,0,471 chrIV 169954 . G A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.962;DP=35;Dels=0.00;FS=34.631;HaplotypeScore=9.2487;MLEAC=1;MLEAF=0.500;MQ=54.49;MQ0=0;MQRankSum=-1.260;QD=1.00;ReadPosRankSum=-3.451;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,10:35:65:65,0,644 chrIV 369290 . G A 111.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.381;DP=180;Dels=0.02;FS=475.647;HaplotypeScore=38.6155;MLEAC=1;MLEAF=0.500;MQ=55.34;MQ0=0;MQRankSum=5.268;QD=0.62;ReadPosRankSum=-8.198;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:91,85:176:99:141,0,1064 chrIV 369294 . G A 161.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.617;DP=184;Dels=0.01;FS=435.700;HaplotypeScore=35.7160;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=3.371;QD=0.88;ReadPosRankSum=-7.494;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:103,80:183:99:191,0,1479 chrIV 369307 . T A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.874;DP=143;Dels=0.00;FS=144.508;HaplotypeScore=3.6118;MLEAC=1;MLEAF=0.500;MQ=54.99;MQ0=0;MQRankSum=1.315;QD=0.42;ReadPosRankSum=-6.814;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,24:143:90:90,0,2207 chrIV 587864 . C T 168.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700;DP=109;Dels=0.05;FS=243.165;HaplotypeScore=29.0603;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=0.425;QD=1.54;ReadPosRankSum=-5.463;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:69,35:104:99:198,0,357 chrIV 607060 . G A 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.062;DP=218;Dels=0.00;FS=220.456;HaplotypeScore=8.9928;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=-0.282;QD=0.38;ReadPosRankSum=-5.545;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,67:217:99:113,0,1025 chrIV 621899 . C A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.802;DP=127;Dels=0.02;FS=205.318;HaplotypeScore=31.7200;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-1.185;QD=0.99;ReadPosRankSum=-0.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,38:124:99:156,0,772 chrIV 655316 . A T 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.498;DP=99;Dels=0.00;FS=112.127;HaplotypeScore=32.4469;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=0;MQRankSum=-3.857;QD=1.17;ReadPosRankSum=0.272;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,31:99:99:146,0,1998 chrIV 699247 . T G 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.617;DP=139;Dels=0.00;FS=207.905;HaplotypeScore=4.6922;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=0.173;QD=1.15;ReadPosRankSum=-2.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,46:139:99:190,0,3189 chrIV 757631 . G C 2685 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=14;QD=25.57;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2718,253,0 chrIV 758310 . T C 1612 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=17;QD=16.62;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1645,174,0 chrIV 783598 . G A 5923.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.7060;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=35.90;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5923,436,0 chrIV 864219 . A G 5529.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.86;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5529,418,0 chrIV 928579 . C G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.302;DP=119;Dels=0.00;FS=180.395;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=0.402;QD=0.21;ReadPosRankSum=-6.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,23:118:55:55,0,3067 chrIV 987244 . G A 1572 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=71;MQRankSum=-0.278;QD=10.34;ReadPosRankSum=1.262;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:44,108:152:99:1605,120,0 chrIV 1160352 . C T 140.26 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.67;MQ0=185;QD=0.73;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:103,89:192:15:173,15,0 chrIV 1253397 . T C 5543.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=37.45;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:5543,421,0 chrIV 1361345 . T G 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.357;DP=134;Dels=0.00;FS=207.412;HaplotypeScore=6.6564;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-0.138;QD=1.42;ReadPosRankSum=-4.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,33:134:99:220,0,3350 chrIV 1402305 . C T 5912.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=35.61;SB=-3.186e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5912,439,0 chrIV 1433710 . A T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=33.84;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5381,418,0 chrIV 1524974 . A G 7131.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=35.13;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:7131,557,0 chrIV 1525313 . T G 3795.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=29.19;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3795,340,0 chrIV 1525335 . C G 3959.01 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.9654;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=27.88;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3959,364,0 chrIV 1525340 . C A 3567.01 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=27.44;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3567,328,0 chrIV 1525345 . C G 3645.01 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9899;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=27.00;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3645,334,0 chrIV 1525351 . C G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=26.75;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3397,310,0 chrIV 1525357 . C G 3177 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=27.9289;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=26.47;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3210,289,0 chrIV 1525363 . C G 2775 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=95.6510;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=25.69;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2808,253,0 chrIV 1525465 . T G 395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DP=163;Dels=0.00;FS=39.805;HaplotypeScore=9.1309;MLEAC=1;MLEAF=0.500;MQ=31.62;MQ0=19;MQRankSum=3.509;QD=2.42;ReadPosRankSum=2.168;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,21:163:99:425,0,2503 chrIV 1525823 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.55;MQ0=214;MQRankSum=-1.185;QD=0.07;ReadPosRankSum=-0.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,3:232:46:46,0,471 chrIX 25376 . C T 239.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.454;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.7052;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=1;MQRankSum=1.328;QD=1.06;ReadPosRankSum=-6.344;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:191,35:226:99:269,0,6538 chrIX 25418 . T C 2337.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;DP=249;Dels=0.00;FS=1.645;HaplotypeScore=9.1069;MLEAC=1;MLEAF=0.500;MQ=53.84;MQ0=1;MQRankSum=4.497;QD=9.39;ReadPosRankSum=4.550;SB=-9.610e+02 GT:AD:DP:GQ:PL 0/1:158,91:249:99:2367,0,5093 chrIX 25586 . T C 1087.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;DP=251;Dels=0.00;FS=7.192;HaplotypeScore=11.2264;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=7;MQRankSum=-4.636;QD=4.33;ReadPosRankSum=-1.052;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:179,71:251:99:1117,0,5424 chrIX 76028 . G T 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.051;DP=187;Dels=0.00;FS=179.061;HaplotypeScore=11.4276;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=0.249;QD=1.10;ReadPosRankSum=-4.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,42:187:99:236,0,2111 chrIX 204804 . C A 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.243;DP=133;Dels=0.00;FS=40.001;HaplotypeScore=7.5835;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=-0.060;QD=0.34;ReadPosRankSum=1.032;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,23:132:75:75,0,2020 chrIX 241054 . C A 193.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.256;DP=151;Dels=0.01;FS=340.183;HaplotypeScore=6.3475;MLEAC=1;MLEAF=0.500;MQ=63.45;MQ0=0;MQRankSum=1.551;QD=1.28;ReadPosRankSum=-8.380;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:84,66:150:99:223,0,377 chrIX 241059 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.425;DP=125;Dels=0.00;FS=152.194;HaplotypeScore=5.9794;MLEAC=1;MLEAF=0.500;MQ=62.78;MQ0=0;MQRankSum=0.790;QD=0.11;ReadPosRankSum=-4.131;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,26:125:43:43,0,939 chrIX 263502 . G C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920;DP=100;Dels=0.00;FS=156.367;HaplotypeScore=7.8919;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=-1.545;QD=0.12;ReadPosRankSum=-1.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,31:100:42:42,0,2200 chrIX 285890 . T G 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.097;DP=137;Dels=0.00;FS=147.873;HaplotypeScore=5.2920;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=0.983;QD=1.96;ReadPosRankSum=-2.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,52:137:99:299,0,2576 chrIX 299898 . T G 1049.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.179;DP=162;Dels=0.00;FS=413.100;HaplotypeScore=2.7339;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=1.245;QD=6.48;ReadPosRankSum=-9.196;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:93,69:162:99:1079,0,3039 chrIX 318694 . T A 6477.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.7614;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=37.01;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:6477,497,0 chrIX 339251 . G T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.679;DP=155;Dels=0.01;FS=237.438;HaplotypeScore=6.7247;MLEAC=1;MLEAF=0.500;MQ=62.28;MQ0=0;MQRankSum=0.429;QD=0.19;ReadPosRankSum=-6.696;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:131,22:153:60:60,0,1353 chrIX 339254 . A T 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.998;DP=155;Dels=0.00;FS=243.300;HaplotypeScore=10.4194;MLEAC=1;MLEAF=0.500;MQ=62.07;MQ0=0;MQRankSum=0.740;QD=0.28;ReadPosRankSum=-7.050;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:134,21:155:74:74,0,1488 chrIX 380951 . C A 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.785;DP=191;Dels=0.02;FS=63.230;HaplotypeScore=16.8328;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-0.860;QD=0.98;ReadPosRankSum=-3.196;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,37:187:99:218,0,2143 chrIX 383892 . G C 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.916;DP=137;Dels=0.00;FS=225.530;HaplotypeScore=2.8823;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-1.965;QD=0.18;ReadPosRankSum=-6.934;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:110,27:137:55:55,0,3310 chrIX 432363 . G A 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DP=245;Dels=0.00;FS=39.615;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.29;MQ0=6;MQRankSum=-6.856;QD=0.66;ReadPosRankSum=-5.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,31:245:99:192,0,7654 chrIX 432374 . C T 428.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=221;Dels=0.00;FS=25.064;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=7;MQRankSum=-7.693;QD=1.94;ReadPosRankSum=-5.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,36:221:99:458,0,6540 chrIX 432859 . G A 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=201;Dels=0.00;FS=49.664;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.87;MQ0=0;MQRankSum=-5.001;QD=0.14;ReadPosRankSum=0.534;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,22:201:58:58,0,6102 chrIX 439851 . A G 354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;DP=59;Dels=0.03;FS=3.021;HaplotypeScore=19.8268;MLEAC=1;MLEAF=0.500;MQ=40.31;MQ0=0;MQRankSum=-4.704;QD=6.00;ReadPosRankSum=1.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,25:57:99:384,0,1000 chrIX 439886 . T G 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.9581;MLEAC=1;MLEAF=0.500;MQ=30.48;MQ0=0;MQRankSum=-0.832;QD=3.30;ReadPosRankSum=2.248;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,9:37:99:152,0,770 chrM 20934 . T G 32654.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=9.2411;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.65;SB=-1.454e+04 GT:AD:DP:GQ:PL 1/1:0,1000:1000:99:32654,2864,0 chrM 33743 . T A 2062 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=32.22;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2095,163,0 chrM 39517 . G T 22216.01 filter AC=2;AF=1.00;AN=2;DP=640;Dels=0.00;FS=0.000;HaplotypeScore=6.3064;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=34.71;SB=-7.414e+03 GT:AD:DP:GQ:PL 1/1:0,640:640:99:22216,1755,0 chrM 56539 . T G 478.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.264;DP=93;Dels=0.00;FS=85.302;HaplotypeScore=4.1537;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=1.638;QD=5.14;ReadPosRankSum=-0.561;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,60:93:99:508,0,732 chrM 82507 . T A 6637.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=32.06;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6637,509,0 chrV 48384 . T C 7547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=225;Dels=0.00;FS=4.279;HaplotypeScore=2.9950;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.717;QD=33.54;ReadPosRankSum=1.470;SB=-3.276e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:7547,608,0 chrV 100596 . C A 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.445;DP=126;Dels=0.00;FS=254.886;HaplotypeScore=9.5814;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-0.389;QD=0.67;ReadPosRankSum=-7.604;SB=-6.302e-03 GT:AD:DP:GQ:PL 0/1:81,45:126:99:114,0,121 chrV 123406 . G C 131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.587;DP=142;Dels=0.00;FS=141.420;HaplotypeScore=7.3663;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=2.057;QD=0.92;ReadPosRankSum=-5.843;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,36:142:99:161,0,2558 chrV 154531 . T A 6060.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=36.07;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:6060,457,0 chrV 243686 . G A 140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.201;DP=157;Dels=0.01;FS=378.135;HaplotypeScore=8.0773;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=0.390;QD=0.89;ReadPosRankSum=-9.326;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:101,55:156:99:170,0,920 chrV 352394 . A G 4630.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=32.38;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:4630,385,0 chrV 517529 . T C 6819.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=38.10;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:6819,515,0 chrV 522998 . C T 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.245;DP=166;Dels=0.00;FS=219.633;HaplotypeScore=116.1104;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-1.125;QD=1.75;ReadPosRankSum=-5.784;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,73:166:99:320,0,1382 chrVI 12416 . T A 3962.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DP=330;Dels=0.00;FS=20.569;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=42.11;MQ0=19;MQRankSum=-4.287;QD=12.01;ReadPosRankSum=-0.164;SB=-1.983e+03 GT:AD:DP:GQ:PL 0/1:181,149:330:99:3962,0,5585 chrVI 97634 . T A 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.271;DP=208;Dels=0.00;FS=115.812;HaplotypeScore=33.3141;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.347;QD=0.13;ReadPosRankSum=-4.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,64:208:58:58,0,2006 chrVI 227503 . A T 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.345;DP=130;Dels=0.00;FS=189.925;HaplotypeScore=48.4984;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=1;MQRankSum=-3.502;QD=2.44;ReadPosRankSum=-3.938;SB=0.028 GT:AD:DP:GQ:PL 0/1:72,58:130:99:347,0,794 chrVII 104051 . G T 684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640;DP=164;Dels=0.00;FS=325.988;HaplotypeScore=4.5889;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=-0.647;QD=4.17;ReadPosRankSum=-8.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,55:164:99:714,0,3562 chrVII 167640 . G A 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.668;DP=110;Dels=0.00;FS=186.146;HaplotypeScore=4.8186;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=0.711;QD=0.85;ReadPosRankSum=-6.165;SB=0.048 GT:AD:DP:GQ:PL 0/1:77,33:110:99:124,0,358 chrVII 267395 . T G 140.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.989;DP=139;Dels=0.00;FS=181.904;HaplotypeScore=7.2714;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-0.069;QD=1.01;ReadPosRankSum=-5.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,31:139:99:170,0,3502 chrVII 386978 . C G 113.13 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=0.85;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:18:146,18,0 chrVII 386979 . G C 75.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=0;MQRankSum=0.859;QD=0.57;ReadPosRankSum=1.573;SB=-1.495e+03 GT:AD:DP:GQ:PL 0/1:1,131:132:15:105,0,15 chrVII 400572 . A T 224.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.790;DP=139;Dels=0.00;FS=353.934;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.389;QD=1.61;ReadPosRankSum=-9.255;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:87,52:139:99:254,0,573 chrVII 401674 . C A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=41.97;MQ0=0;QD=32.36;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5178,442,0 chrVII 401698 . T A 4205.01 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=4;QD=28.61;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4205,394,0 chrVII 530010 . C A 240.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;DP=356;Dels=0.00;FS=3.720;HaplotypeScore=185.6772;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=-8.594;QD=0.67;ReadPosRankSum=2.826;SB=-4.450e+02 GT:AD:DP:GQ:PL 0/1:284,72:356:99:270,0,5873 chrVII 530016 . A C 893.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=360;Dels=0.00;FS=50.719;HaplotypeScore=175.0437;MLEAC=1;MLEAF=0.500;MQ=42.43;MQ0=0;MQRankSum=-3.028;QD=2.48;ReadPosRankSum=-4.665;SB=-1.218e+03 GT:AD:DP:GQ:PL 0/1:227,132:360:99:923,0,5184 chrVII 530022 . C A 262.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;DP=359;Dels=0.00;FS=10.472;HaplotypeScore=158.4436;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=-8.413;QD=0.73;ReadPosRankSum=5.664;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:284,74:358:99:292,0,5934 chrVII 530028 . C A 274.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;DP=354;Dels=0.00;FS=15.807;HaplotypeScore=151.3296;MLEAC=1;MLEAF=0.500;MQ=42.16;MQ0=0;MQRankSum=-8.818;QD=0.77;ReadPosRankSum=5.885;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:280,74:354:99:304,0,5765 chrVII 530034 . A C 1857.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=340;Dels=0.00;FS=68.366;HaplotypeScore=80.3167;MLEAC=1;MLEAF=0.500;MQ=41.55;MQ0=0;MQRankSum=0.383;QD=5.46;ReadPosRankSum=0.626;SB=-1.452e+03 GT:AD:DP:GQ:PL 0/1:188,152:340:99:1887,0,3594 chrVII 530071 . A T 214.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DP=268;Dels=0.00;FS=99.603;HaplotypeScore=340.4169;MLEAC=1;MLEAF=0.500;MQ=43.60;MQ0=0;MQRankSum=-7.026;QD=0.80;ReadPosRankSum=-6.081;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:184,84:268:99:244,0,4053 chrVII 530076 . T A 537.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=259;Dels=0.00;FS=104.152;HaplotypeScore=144.0955;MLEAC=1;MLEAF=0.500;MQ=44.63;MQ0=0;MQRankSum=-5.317;QD=2.07;ReadPosRankSum=-4.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,38:259:99:567,0,4145 chrVII 530079 . C A 1071.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DP=257;Dels=0.00;FS=105.926;HaplotypeScore=110.2661;MLEAC=1;MLEAF=0.500;MQ=44.73;MQ0=0;MQRankSum=-8.440;QD=4.17;ReadPosRankSum=-8.766;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:184,73:257:99:1101,0,4101 chrVII 530082 . T A 549.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DP=254;Dels=0.00;FS=102.152;HaplotypeScore=78.3392;MLEAC=1;MLEAF=0.500;MQ=45.00;MQ0=0;MQRankSum=-6.653;QD=2.16;ReadPosRankSum=-7.909;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,38:254:99:579,0,4294 chrVII 530093 . A C 241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=216;Dels=0.00;FS=81.209;HaplotypeScore=17.5207;MLEAC=1;MLEAF=0.500;MQ=50.14;MQ0=0;MQRankSum=-6.718;QD=1.12;ReadPosRankSum=-8.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,31:216:99:271,0,4682 chrVII 807885 . G A 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.183;DP=153;Dels=0.03;FS=205.127;HaplotypeScore=22.2066;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=0.659;QD=0.37;ReadPosRankSum=-3.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,26:148:86:86,0,805 chrVII 848557 . G A 211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.787;DP=128;Dels=0.00;FS=108.424;HaplotypeScore=14.6325;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-0.329;QD=1.65;ReadPosRankSum=-5.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,51:128:99:241,0,659 chrVII 848561 . G A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.143;DP=123;Dels=0.00;FS=125.805;HaplotypeScore=22.1459;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-0.313;QD=0.75;ReadPosRankSum=-5.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,51:123:99:122,0,536 chrVII 919959 . G T 1123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.147;DP=154;Dels=0.01;FS=151.851;HaplotypeScore=68.5729;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=0;MQRankSum=-4.221;QD=7.29;ReadPosRankSum=-2.429;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,88:153:99:1153,0,1515 chrVII 919983 . C A 450.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.720;DP=148;Dels=0.00;FS=128.540;HaplotypeScore=56.8202;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-4.881;QD=3.04;ReadPosRankSum=-3.127;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,62:148:99:480,0,2363 chrVII 1011827 . A T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.715;DP=147;Dels=0.00;FS=160.982;HaplotypeScore=51.0100;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.117;QD=0.46;ReadPosRankSum=-6.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,58:147:98:98,0,1212 chrVII 1051846 . C T 414.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.629;DP=139;Dels=0.00;FS=238.542;HaplotypeScore=8.3380;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-0.517;QD=2.98;ReadPosRankSum=-6.823;SB=0.048 GT:AD:DP:GQ:PL 0/1:80,59:139:99:444,0,754 chrVII 1084067 . T G 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.151;DP=128;Dels=0.00;FS=179.360;HaplotypeScore=1.8218;MLEAC=1;MLEAF=0.500;MQ=55.22;MQ0=0;MQRankSum=-1.934;QD=0.40;ReadPosRankSum=-2.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,49:128:81:81,0,2709 chrVIII 8 . A C 123.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=39.2857;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=3;MQRankSum=1.080;QD=3.01;ReadPosRankSum=3.023;SB=2.74 GT:AD:DP:GQ:PL 1/1:36,5:41:15:156,15,0 chrVIII 138 . A G 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=72;Dels=0.00;FS=4.089;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=31.08;MQ0=13;MQRankSum=-0.614;QD=0.31;ReadPosRankSum=-0.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,6:72:52:52,0,838 chrVIII 355 . T C 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;DP=103;Dels=0.00;FS=20.943;HaplotypeScore=7.5802;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=1.682;QD=0.69;ReadPosRankSum=1.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,8:103:99:101,0,1220 chrVIII 1744 . A C 225.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DP=196;Dels=0.00;FS=31.574;HaplotypeScore=2.6855;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=67;MQRankSum=-5.271;QD=1.15;ReadPosRankSum=0.677;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:141,54:196:99:255,0,2846 chrVIII 1748 . T C 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;DP=197;Dels=0.00;FS=29.533;HaplotypeScore=4.3063;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=70;MQRankSum=-4.950;QD=1.50;ReadPosRankSum=0.162;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:139,58:197:99:325,0,2632 chrVIII 1816 . C A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;DP=150;Dels=0.00;FS=1.121;HaplotypeScore=2.6551;MLEAC=1;MLEAF=0.500;MQ=34.25;MQ0=32;MQRankSum=-3.137;QD=0.10;ReadPosRankSum=-1.581;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:129,21:150:45:45,0,2783 chrVIII 1846 . A G 664.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.913;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8846;MLEAC=1;MLEAF=0.500;MQ=40.15;MQ0=4;MQRankSum=-1.905;QD=5.07;ReadPosRankSum=-6.354;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:87,43:131:99:694,0,2245 chrVIII 5293 . G T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;DP=134;Dels=0.00;FS=16.317;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.18;MQ0=2;MQRankSum=-5.795;QD=0.23;ReadPosRankSum=2.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,19:134:61:61,0,3868 chrVIII 5556 . C T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DP=220;Dels=0.00;FS=28.583;HaplotypeScore=6.3521;MLEAC=1;MLEAF=0.500;MQ=46.86;MQ0=5;MQRankSum=-9.912;QD=0.31;ReadPosRankSum=4.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,54:220:98:98,0,5399 chrVIII 81881 . G A 180.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.447;DP=164;Dels=0.01;FS=389.278;HaplotypeScore=4.8516;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=1.913;QD=1.10;ReadPosRankSum=-9.551;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:113,50:163:99:210,0,500 chrVIII 81886 . G A 123.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.489;DP=149;Dels=0.00;FS=269.699;HaplotypeScore=5.4730;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=0.627;QD=0.83;ReadPosRankSum=-8.183;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:116,33:149:99:153,0,641 chrVIII 159794 . T G 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.935;DP=112;Dels=0.00;FS=94.136;HaplotypeScore=10.4248;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-0.193;QD=1.98;ReadPosRankSum=-2.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,41:112:99:252,0,1968 chrVIII 161791 . G T 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.348;DP=123;Dels=0.00;FS=115.081;HaplotypeScore=2.6812;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=0.288;QD=1.56;ReadPosRankSum=-3.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,37:123:99:222,0,2549 chrVIII 216123 . C T 4441.01 filter AC=2;AF=1.00;AN=2;DP=552;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.41;MQ0=428;QD=8.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:404,148:552:99:4441,373,0 chrVIII 236987 . G A 667.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.780;DP=126;Dels=0.00;FS=323.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=3.909;QD=5.29;ReadPosRankSum=-7.739;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:47,79:126:99:697,0,663 chrVIII 236993 . T A 353.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.772;DP=117;Dels=0.00;FS=314.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=0.939;QD=3.02;ReadPosRankSum=-8.427;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:50,67:117:99:383,0,790 chrVIII 340348 . G T 374.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.714;DP=96;Dels=0.00;FS=91.337;HaplotypeScore=26.7926;MLEAC=1;MLEAF=0.500;MQ=55.05;MQ0=0;MQRankSum=-1.357;QD=3.90;ReadPosRankSum=-3.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,37:96:99:404,0,1431 chrVIII 340364 . G T 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.009;DP=95;Dels=0.00;FS=93.577;HaplotypeScore=55.5315;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=-1.721;QD=2.08;ReadPosRankSum=-4.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,30:95:99:228,0,2033 chrVIII 396971 . G A 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.437;DP=114;Dels=0.00;FS=148.186;HaplotypeScore=12.9459;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-0.315;QD=1.49;ReadPosRankSum=-4.746;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,25:114:99:200,0,1051 chrVIII 417054 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.60;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4913,385,0 chrVIII 497163 . G C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.607;DP=118;Dels=0.00;FS=59.541;HaplotypeScore=11.7175;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-0.959;QD=0.35;ReadPosRankSum=-1.545;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,23:118:71:71,0,2754 chrVIII 499958 . C T 7031.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=37.40;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:7031,545,0 chrVIII 511255 . C T 5079.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=31.55;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5079,409,0 chrVIII 524447 . C G 5239.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.69;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:5239,391,0 chrVIII 556939 . T G 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;DP=106;Dels=0.00;FS=12.284;HaplotypeScore=56.9131;MLEAC=1;MLEAF=0.500;MQ=42.16;MQ0=8;MQRankSum=-1.513;QD=1.11;ReadPosRankSum=-1.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,18:106:99:148,0,365 chrVIII 556943 . T G 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;DP=121;Dels=0.02;FS=0.770;HaplotypeScore=103.5996;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=10;MQRankSum=4.988;QD=1.08;ReadPosRankSum=2.463;SB=-1.049e+03 GT:AD:DP:GQ:PL 0/1:46,72:118:99:161,0,213 chrVIII 556945 . G T 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;DP=119;Dels=0.02;FS=11.454;HaplotypeScore=100.1294;MLEAC=1;MLEAF=0.500;MQ=40.76;MQ0=10;MQRankSum=5.812;QD=1.03;ReadPosRankSum=2.262;SB=-7.790e+02 GT:AD:DP:GQ:PL 0/1:49,68:117:96:153,0,96 chrVIII 561883 . G C 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.10;MQ0=164;MQRankSum=-0.198;QD=0.32;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,6:171:46:85,0,46 chrVIII 562374 . G A 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;DP=205;Dels=0.00;FS=55.978;HaplotypeScore=1.7297;MLEAC=1;MLEAF=0.500;MQ=20.32;MQ0=115;MQRankSum=3.663;QD=1.47;ReadPosRankSum=-2.787;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:165,40:205:99:332,0,1657 chrVIII 562440 . A G 450.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;DP=276;Dels=0.00;FS=7.273;HaplotypeScore=3.7076;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=59;MQRankSum=-1.618;QD=1.63;ReadPosRankSum=2.487;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:192,83:276:99:480,0,4507 chrVIII 562443 . A G 427.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DP=273;Dels=0.00;FS=5.407;HaplotypeScore=5.7042;MLEAC=1;MLEAF=0.500;MQ=31.43;MQ0=55;MQRankSum=-1.109;QD=1.56;ReadPosRankSum=1.760;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:192,81:273:99:457,0,4600 chrVIII 562637 . T G 119.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=6.7584;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=3;MQRankSum=1.588;QD=5.95;ReadPosRankSum=1.376;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:11,8:19:15:149,0,15 chrX 97478 . G A 6374.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=38.17;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:6374,482,0 chrX 136931 . G A 79.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.665;DP=203;Dels=0.00;FS=429.948;HaplotypeScore=4.4490;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-0.753;QD=0.39;ReadPosRankSum=-10.371;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:138,65:203:99:109,0,1275 chrX 148659 . G A 6260.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=39.13;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:6260,467,0 chrX 199170 . A C 2243 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=8;QD=26.08;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2276,216,0 chrX 200219 . A G 1716 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=18;QD=19.07;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1749,159,0 chrX 265950 . T G 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.572;DP=169;Dels=0.00;FS=157.864;HaplotypeScore=21.5030;MLEAC=1;MLEAF=0.500;MQ=57.98;MQ0=0;MQRankSum=-0.322;QD=0.60;ReadPosRankSum=-1.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,36:169:99:132,0,3343 chrX 358232 . G T 107.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.374;DP=84;Dels=0.00;FS=175.363;HaplotypeScore=7.4731;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=0.206;QD=1.27;ReadPosRankSum=-6.648;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:40,41:84:99:137,0,127 chrX 424928 . G T 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.252;DP=122;Dels=0.03;FS=294.570;HaplotypeScore=13.7417;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=0.777;QD=0.79;ReadPosRankSum=-5.879;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:78,40:118:99:126,0,1256 chrX 714763 . T G 398.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.899;DP=172;Dels=0.00;FS=211.324;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=48.86;MQ0=0;MQRankSum=3.100;QD=2.31;ReadPosRankSum=-4.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,59:172:99:428,0,3499 chrX 715050 . G A 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;DP=190;Dels=0.00;FS=18.939;HaplotypeScore=4.6584;MLEAC=1;MLEAF=0.500;MQ=45.66;MQ0=0;MQRankSum=-6.474;QD=1.03;ReadPosRankSum=-1.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,30:190:99:225,0,5297 chrX 715054 . G T 535.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;DP=197;Dels=0.00;FS=22.646;HaplotypeScore=5.6567;MLEAC=1;MLEAF=0.500;MQ=45.14;MQ0=0;MQRankSum=-4.801;QD=2.72;ReadPosRankSum=-2.344;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:157,40:197:99:565,0,4855 chrX 715068 . G A 875.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DP=223;Dels=0.00;FS=28.815;HaplotypeScore=5.9822;MLEAC=1;MLEAF=0.500;MQ=43.57;MQ0=0;MQRankSum=-3.480;QD=3.92;ReadPosRankSum=0.019;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:158,65:223:99:905,0,4889 chrX 715072 . G T 1306.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;DP=219;Dels=0.00;FS=25.616;HaplotypeScore=4.9838;MLEAC=1;MLEAF=0.500;MQ=42.58;MQ0=0;MQRankSum=-2.995;QD=5.96;ReadPosRankSum=0.061;SB=-2.060e+02 GT:AD:DP:GQ:PL 0/1:149,70:219:99:1336,0,4214 chrX 715081 . T G 1368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;DP=216;Dels=0.00;FS=25.440;HaplotypeScore=3.4071;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=4;MQRankSum=-2.406;QD=6.33;ReadPosRankSum=2.750;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:139,77:216:99:1398,0,3945 chrX 715087 . A G 1425.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;DP=218;Dels=0.00;FS=23.736;HaplotypeScore=3.7264;MLEAC=1;MLEAF=0.500;MQ=39.65;MQ0=11;MQRankSum=-1.737;QD=6.54;ReadPosRankSum=2.744;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:134,84:218:99:1455,0,3590 chrX 715095 . G A 2595.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DP=195;Dels=0.00;FS=9.321;HaplotypeScore=5.1060;MLEAC=1;MLEAF=0.500;MQ=37.57;MQ0=13;MQRankSum=-1.835;QD=13.31;ReadPosRankSum=-0.678;SB=-8.300e+02 GT:AD:DP:GQ:PL 0/1:92,103:195:99:2625,0,1632 chrX 715099 . G T 2469.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DP=189;Dels=0.00;FS=8.236;HaplotypeScore=3.9521;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=16;MQRankSum=-2.026;QD=13.06;ReadPosRankSum=0.120;SB=-7.780e+02 GT:AD:DP:GQ:PL 0/1:93,95:189:99:2499,0,1635 chrX 715108 . A T 2236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.390;DP=202;Dels=0.00;FS=4.086;HaplotypeScore=3.2381;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=20;MQRankSum=-0.048;QD=11.07;ReadPosRankSum=1.472;SB=-6.400e+02 GT:AD:DP:GQ:PL 0/1:113,89:202:99:2266,0,1710 chrX 715114 . G A 2064.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.5253;MLEAC=1;MLEAF=0.500;MQ=32.21;MQ0=24;MQRankSum=1.236;QD=9.74;ReadPosRankSum=2.306;SB=-6.310e+02 GT:AD:DP:GQ:PL 0/1:127,84:212:99:2094,0,1790 chrX 715122 . G A 1956.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;DP=222;Dels=0.00;FS=2.880;HaplotypeScore=4.4487;MLEAC=1;MLEAF=0.500;MQ=30.19;MQ0=28;MQRankSum=1.890;QD=8.81;ReadPosRankSum=3.003;SB=-4.930e+02 GT:AD:DP:GQ:PL 0/1:146,76:222:99:1986,0,1809 chrX 715126 . A T 1754.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.017;DP=207;Dels=0.00;FS=8.977;HaplotypeScore=5.4470;MLEAC=1;MLEAF=0.500;MQ=29.72;MQ0=28;MQRankSum=1.976;QD=8.47;ReadPosRankSum=1.958;SB=-3.590e+02 GT:AD:DP:GQ:PL 0/1:136,70:207:99:1784,0,1455 chrX 715129 . C A 1789.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;DP=208;Dels=0.00;FS=10.646;HaplotypeScore=6.2357;MLEAC=1;MLEAF=0.500;MQ=29.64;MQ0=29;MQRankSum=2.378;QD=8.60;ReadPosRankSum=0.448;SB=-3.560e+02 GT:AD:DP:GQ:PL 0/1:137,70:208:99:1819,0,1372 chrX 715132 . T A 1608.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=205;Dels=0.00;FS=8.025;HaplotypeScore=7.2340;MLEAC=1;MLEAF=0.500;MQ=28.98;MQ0=30;MQRankSum=2.523;QD=7.84;ReadPosRankSum=0.754;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:141,64:205:99:1638,0,1461 chrX 715141 . A G 1354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;DP=222;Dels=0.00;FS=6.025;HaplotypeScore=5.7398;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=36;MQRankSum=2.840;QD=6.10;ReadPosRankSum=-2.668;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:154,68:222:99:1384,0,1399 chrX 715176 . G A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DP=199;Dels=0.00;FS=4.989;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=9.40;MQ0=54;MQRankSum=3.157;QD=0.10;ReadPosRankSum=2.010;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,4:199:49:49,0,372 chrX 715180 . A T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;DP=195;Dels=0.00;FS=5.069;HaplotypeScore=2.7853;MLEAC=1;MLEAF=0.500;MQ=9.06;MQ0=51;MQRankSum=3.191;QD=0.13;ReadPosRankSum=2.121;SB=0.011 GT:AD:DP:GQ:PL 0/1:191,4:195:55:55,0,305 chrX 715183 . C A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DP=196;Dels=0.00;FS=5.041;HaplotypeScore=2.7853;MLEAC=1;MLEAF=0.500;MQ=9.05;MQ0=51;MQRankSum=3.181;QD=0.13;ReadPosRankSum=2.034;SB=0.011 GT:AD:DP:GQ:PL 0/1:191,5:196:55:55,0,311 chrX 715186 . T A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=208;Dels=0.00;FS=10.403;HaplotypeScore=3.9933;MLEAC=1;MLEAF=0.500;MQ=8.87;MQ0=55;MQRankSum=2.533;QD=0.12;ReadPosRankSum=0.559;SB=0.011 GT:AD:DP:GQ:PL 0/1:200,8:208:55:55,0,308 chrX 738075 . G T 2515.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.320;DP=199;Dels=0.00;FS=4.151;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=37.44;MQ0=2;MQRankSum=0.355;QD=12.64;ReadPosRankSum=0.829;SB=-6.320e+02 GT:AD:DP:GQ:PL 0/1:94,105:199:99:2545,0,2907 chrX 740238 . T C 640 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=11;QD=18.29;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:60:673,60,0 chrX 745747 . G T 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=12.4209;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=0;MQRankSum=2.827;QD=3.79;ReadPosRankSum=0.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,4:24:99:121,0,204 chrXI 67798 . G T 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.622;DP=136;Dels=0.00;FS=263.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=-0.899;QD=0.46;ReadPosRankSum=-7.756;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:110,26:136:93:93,0,737 chrXI 277055 . G T 300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500;DP=162;Dels=0.01;FS=221.704;HaplotypeScore=15.7264;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=1.268;QD=1.85;ReadPosRankSum=-2.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,57:161:99:330,0,2143 chrXI 277059 . A T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.545;DP=154;Dels=0.00;FS=184.331;HaplotypeScore=17.3898;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=0.348;QD=0.27;ReadPosRankSum=-2.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,47:154:72:72,0,2248 chrXI 385128 . G T 88.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.512;DP=165;Dels=0.00;FS=409.207;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-0.753;QD=0.53;ReadPosRankSum=-8.998;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:113,52:165:99:118,0,864 chrXI 385129 . A T 89.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.904;DP=162;Dels=0.00;FS=378.522;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=0.402;QD=0.55;ReadPosRankSum=-9.007;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:114,48:162:99:119,0,900 chrXI 385133 . C T 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.821;DP=156;Dels=0.00;FS=254.311;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.229;QD=0.78;ReadPosRankSum=-7.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,36:156:99:151,0,1107 chrXI 524066 . A T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.755;DP=201;Dels=0.00;FS=219.521;HaplotypeScore=91.8079;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=1;MQRankSum=-1.323;QD=0.14;ReadPosRankSum=-6.503;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:158,42:200:58:58,0,1063 chrXI 524076 . C T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.552;DP=221;Dels=0.00;FS=367.274;HaplotypeScore=29.1130;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=1;MQRankSum=-3.010;QD=0.48;ReadPosRankSum=-7.576;SB=7.160e-03 GT:AD:DP:GQ:PL 0/1:178,43:221:99:135,0,2008 chrXI 638438 . C T 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.007;DP=206;Dels=0.00;FS=148.642;HaplotypeScore=12.4825;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=0.811;QD=0.28;ReadPosRankSum=-8.125;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,68:206:87:87,0,1738 chrXI 666757 . G T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=62.4550;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=4;MQRankSum=0.297;QD=0.26;ReadPosRankSum=0.172;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:57,4:61:46:46,0,156 chrXI 666789 . T G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=32.0592;MLEAC=1;MLEAF=0.500;MQ=24.77;MQ0=5;MQRankSum=0.921;QD=1.43;ReadPosRankSum=0.020;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,12:38:87:87,0,94 chrXI 666814 . T G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=13;Dels=0.00;FS=3.979;HaplotypeScore=2.6299;MLEAC=1;MLEAF=0.500;MQ=18.69;MQ0=3;MQRankSum=0.633;QD=2.31;ReadPosRankSum=-1.036;SB=-2.900e+01 GT:AD:DP:GQ:PL 0/1:9,4:13:60:60,0,71 chrXII 161 . T C 330.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;DP=196;Dels=0.00;FS=7.481;HaplotypeScore=2.6482;MLEAC=1;MLEAF=0.500;MQ=34.50;MQ0=24;MQRankSum=-4.297;QD=1.68;ReadPosRankSum=-0.248;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:161,35:196:99:360,0,3727 chrXII 5741 . T C 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.738;DP=250;Dels=0.00;FS=1.097;HaplotypeScore=2.3297;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=1;MQRankSum=-7.607;QD=0.72;ReadPosRankSum=-1.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:216,34:250:99:210,0,7024 chrXII 5757 . A T 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=242;Dels=0.00;FS=5.058;HaplotypeScore=7.6319;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=0;MQRankSum=-7.715;QD=0.40;ReadPosRankSum=0.812;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,28:242:99:126,0,6755 chrXII 5823 . A G 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.454;DP=156;Dels=0.00;FS=53.953;HaplotypeScore=3.9281;MLEAC=1;MLEAF=0.500;MQ=43.04;MQ0=0;MQRankSum=-7.037;QD=0.67;ReadPosRankSum=-5.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,20:156:99:134,0,4316 chrXII 10659 . G T 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.46;MQ0=163;MQRankSum=0.720;QD=0.11;ReadPosRankSum=-0.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,3:169:49:49,0,116 chrXII 10965 . T C 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.69;MQ0=100;MQRankSum=-0.840;QD=1.26;ReadPosRankSum=0.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,13:144:99:211,0,960 chrXII 11238 . C A 86.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=111;Dels=0.00;FS=7.988;HaplotypeScore=28.4452;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=1;MQRankSum=-2.088;QD=0.77;ReadPosRankSum=-5.540;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:87,24:111:99:116,0,1858 chrXII 48880 . G A 479.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.964;DP=184;Dels=0.01;FS=489.189;HaplotypeScore=12.8957;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=1;MQRankSum=0.141;QD=2.60;ReadPosRankSum=-8.164;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:78,105:183:99:509,0,581 chrXII 220717 . G A 1369 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=32.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1402,126,0 chrXII 264103 . C T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.324;DP=122;Dels=0.00;FS=229.951;HaplotypeScore=1.6624;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=0;MQRankSum=2.391;QD=0.15;ReadPosRankSum=-7.499;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:96,26:122:48:48,0,740 chrXII 291384 . A G 6020.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=32.72;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6020,469,0 chrXII 291386 . A G 6259.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=34.58;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6259,475,0 chrXII 528749 . T A 6869.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=34.00;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6869,536,0 chrXII 543095 . G T 361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.228;DP=174;Dels=0.00;FS=151.817;HaplotypeScore=10.1416;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=0.273;QD=2.07;ReadPosRankSum=-2.146;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,64:174:99:391,0,2727 chrXII 636568 . C T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.785;DP=202;Dels=0.03;FS=169.461;HaplotypeScore=30.1568;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-1.219;QD=0.34;ReadPosRankSum=-4.474;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,84:196:98:98,0,1516 chrXII 636574 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.464;DP=198;Dels=0.00;FS=163.716;HaplotypeScore=45.0812;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.774;QD=0.06;ReadPosRankSum=-7.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,88:198:42:42,0,1360 chrXII 725936 . G A 6580.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=39.40;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:6580,482,0 chrXII 734703 . T A 1068 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=14.83;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:81:1101,81,0 chrXII 828903 . C T 6295.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.60;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:6295,491,0 chrXII 944238 . C A 495 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.80;MQ0=72;QD=4.76;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:56,48:104:48:528,48,0 chrXII 1025001 . G T 219.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.845;DP=143;Dels=0.03;FS=225.821;HaplotypeScore=62.9873;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.125;QD=1.53;ReadPosRankSum=5.952;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:68,71:139:99:249,0,509 chrXII 1039435 . T A 5067.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.7490;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=35.19;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:5067,397,0 chrXII 1066553 . G C 53.97 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.89;MQ0=126;QD=0.37;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:60,87:147:9:86,9,0 chrXIII 34473 . T G 6272.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5298;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=1;QD=35.84;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:6272,488,0 chrXIII 158433 . T A 155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.565;DP=136;Dels=0.00;FS=243.559;HaplotypeScore=8.6349;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=-0.428;QD=1.14;ReadPosRankSum=-6.044;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,39:136:99:185,0,1598 chrXIII 192013 . C T 143.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.396;DP=204;Dels=0.01;FS=351.423;HaplotypeScore=27.1919;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=-0.292;QD=0.70;ReadPosRankSum=-9.558;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:124,74:201:99:173,0,1550 chrXIII 202191 . C A 224.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=196;Dels=0.00;FS=45.485;HaplotypeScore=1.9117;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=32;MQRankSum=-8.408;QD=1.14;ReadPosRankSum=-8.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,106:196:99:254,0,1936 chrXIII 202192 . T G 224.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;DP=195;Dels=0.00;FS=72.555;HaplotypeScore=2.7783;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=24;MQRankSum=-8.314;QD=1.15;ReadPosRankSum=-8.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,110:195:99:254,0,1968 chrXIII 202197 . T C 837.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.631;DP=253;Dels=0.00;FS=64.019;HaplotypeScore=2.7783;MLEAC=1;MLEAF=0.500;MQ=41.29;MQ0=23;MQRankSum=-7.599;QD=3.31;ReadPosRankSum=-4.868;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,152:253:99:867,0,2552 chrXIII 238793 . A T 526.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.717;DP=199;Dels=0.00;FS=517.512;HaplotypeScore=135.4308;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=1;MQRankSum=-0.085;QD=2.64;ReadPosRankSum=-10.301;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:87,112:199:99:556,0,261 chrXIII 238798 . C T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.629;DP=194;Dels=0.02;FS=224.519;HaplotypeScore=129.1544;MLEAC=1;MLEAF=0.500;MQ=55.67;MQ0=0;MQRankSum=-2.057;QD=0.51;ReadPosRankSum=-7.459;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,73:191:99:129,0,371 chrXIII 238806 . G T 239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.167;DP=124;Dels=0.00;FS=186.782;HaplotypeScore=14.6857;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=-1.281;QD=1.93;ReadPosRankSum=-6.869;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,26:124:99:269,0,678 chrXIII 325905 . T A 4969.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=36.81;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4969,385,0 chrXIII 361550 . G A 444 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.49;MQ0=30;QD=8.38;SB=-6.622e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:48:477,48,0 chrXIII 448333 . G A 88.26 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1816;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=0.47;SB=-3.576e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:15:121,15,0 chrXIII 448334 . A G 84.26 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1816;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=0.46;SB=-3.449e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:15:117,15,0 chrXIII 508047 . G T 844.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.582;DP=152;Dels=0.00;FS=275.268;HaplotypeScore=24.0605;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=-1.432;QD=5.55;ReadPosRankSum=-2.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,62:152:99:874,0,2640 chrXIII 508063 . A T 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.662;DP=127;Dels=0.00;FS=153.700;HaplotypeScore=16.8548;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-2.668;QD=1.24;ReadPosRankSum=-5.780;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,36:127:99:187,0,2882 chrXIII 571267 . G A 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.986;DP=154;Dels=0.00;FS=118.027;HaplotypeScore=5.7645;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=1.214;QD=0.47;ReadPosRankSum=-7.500;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,57:154:99:102,0,479 chrXIII 630505 . A G 6216.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=35.52;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:6216,475,0 chrXIII 672129 . T C 4695.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=36.40;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4695,361,0 chrXIII 674889 . C T 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.453;DP=114;Dels=0.01;FS=87.927;HaplotypeScore=28.0021;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=0.382;QD=0.76;ReadPosRankSum=-3.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,33:113:99:117,0,1214 chrXIII 680936 . T C 90.26 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.9920;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=0.56;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:15:123,15,0 chrXIII 680940 . C T 136.13 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=0.88;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:18:169,18,0 chrXIII 772695 . C T 182.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.546;DP=137;Dels=0.00;FS=256.199;HaplotypeScore=72.1753;MLEAC=1;MLEAF=0.500;MQ=55.47;MQ0=0;MQRankSum=-2.308;QD=1.33;ReadPosRankSum=-4.767;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,53:137:99:212,0,1469 chrXIII 809198 . A G 5840.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=35.83;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5840,451,0 chrXIII 851747 . T A 1056.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.722;DP=202;Dels=0.00;FS=482.137;HaplotypeScore=66.6979;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-0.868;QD=5.23;ReadPosRankSum=-9.192;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:67,135:202:99:1086,0,1271 chrXIII 908185 . A G 1855.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.682;DP=206;Dels=0.00;FS=10.276;HaplotypeScore=6.7166;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=0;MQRankSum=-7.951;QD=9.00;ReadPosRankSum=-3.766;SB=-3.810e+02 GT:AD:DP:GQ:PL 0/1:99,107:206:99:1885,0,2368 chrXIII 908196 . G C 2026.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DP=219;Dels=0.00;FS=23.428;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=41.95;MQ0=0;MQRankSum=-5.632;QD=9.25;ReadPosRankSum=-4.512;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:105,114:219:99:2056,0,2541 chrXIII 908198 . G T 2051.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;DP=226;Dels=0.00;FS=30.873;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=42.51;MQ0=0;MQRankSum=-5.507;QD=9.08;ReadPosRankSum=-5.122;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:106,120:226:99:2081,0,2539 chrXIII 908203 . G A 2368.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.234;DP=241;Dels=0.00;FS=25.205;HaplotypeScore=3.0782;MLEAC=1;MLEAF=0.500;MQ=43.32;MQ0=0;MQRankSum=-4.807;QD=9.83;ReadPosRankSum=-4.421;SB=-5.670e+02 GT:AD:DP:GQ:PL 0/1:112,129:241:99:2398,0,2699 chrXIII 908218 . C T 2625.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;DP=235;Dels=0.00;FS=3.720;HaplotypeScore=13.8306;MLEAC=1;MLEAF=0.500;MQ=45.55;MQ0=1;MQRankSum=-3.633;QD=11.17;ReadPosRankSum=-2.599;SB=-1.170e+03 GT:AD:DP:GQ:PL 0/1:100,135:235:99:2655,0,2579 chrXIII 908275 . G A 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DP=200;Dels=0.00;FS=19.671;HaplotypeScore=31.2938;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=1;MQRankSum=-0.674;QD=0.91;ReadPosRankSum=-1.817;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:172,28:200:99:211,0,4805 chrXIII 908365 . A G 244.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.694;DP=263;Dels=0.00;FS=32.383;HaplotypeScore=29.2065;MLEAC=1;MLEAF=0.500;MQ=47.21;MQ0=0;MQRankSum=-4.046;QD=0.93;ReadPosRankSum=-3.633;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:196,67:263:99:274,0,5206 chrXIII 908527 . A G 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.270;DP=410;Dels=0.00;FS=61.379;HaplotypeScore=52.3731;MLEAC=1;MLEAF=0.500;MQ=49.80;MQ0=0;MQRankSum=-8.446;QD=0.69;ReadPosRankSum=-2.177;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:354,55:410:99:311,0,9605 chrXIII 908563 . A G 357.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;DP=356;Dels=0.00;FS=25.757;HaplotypeScore=190.5016;MLEAC=1;MLEAF=0.500;MQ=50.83;MQ0=1;MQRankSum=-8.580;QD=1.00;ReadPosRankSum=7.711;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:296,60:356:99:387,0,7112 chrXIII 908594 . T G 728.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;DP=316;Dels=0.00;FS=61.852;HaplotypeScore=72.5430;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-9.614;QD=2.30;ReadPosRankSum=-5.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,80:316:99:758,0,7630 chrXIII 924373 . G T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;DP=37;Dels=0.03;FS=5.775;HaplotypeScore=49.7604;MLEAC=1;MLEAF=0.500;MQ=29.06;MQ0=5;MQRankSum=1.480;QD=0.31;ReadPosRankSum=-0.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,13:36:41:41,0,81 chrXIV 23913 . A T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.439;DP=135;Dels=0.00;FS=127.194;HaplotypeScore=6.0777;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.619;QD=0.30;ReadPosRankSum=-5.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,35:135:70:70,0,2745 chrXIV 300948 . T A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;DP=156;Dels=0.00;FS=193.673;HaplotypeScore=7.9820;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=1;MQRankSum=-0.331;QD=0.26;ReadPosRankSum=-3.136;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:70,86:156:70:70,0,343 chrXIV 377887 . G T 6126.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.5661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=33.85;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6126,470,0 chrXIV 415071 . C T 431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.750;DP=168;Dels=0.00;FS=15.457;HaplotypeScore=2.7140;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.727;QD=2.57;ReadPosRankSum=-2.467;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:7,161:168:51:464,51,0 chrXIV 415088 . C T 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.927;DP=156;Dels=0.00;FS=274.420;HaplotypeScore=21.1081;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=-1.081;QD=2.01;ReadPosRankSum=-7.663;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:66,90:156:99:343,0,222 chrXIV 415096 . C T 362.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.985;DP=158;Dels=0.00;FS=223.133;HaplotypeScore=22.9745;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=1.826;QD=2.29;ReadPosRankSum=-7.813;SB=-5.802e+01 GT:AD:DP:GQ:PL 0/1:64,93:158:99:392,0,197 chrXIV 444667 . G T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.294;DP=154;Dels=0.01;FS=170.259;HaplotypeScore=22.0785;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.158;QD=0.10;ReadPosRankSum=-5.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,50:152:45:45,0,1358 chrXIV 471767 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=36.02;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3962,301,0 chrXIV 520142 . A C 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=6;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=1;MQRankSum=0.731;QD=5.96;ReadPosRankSum=0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:67,6,0 chrXIV 772633 . G A 60.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.290;DP=115;Dels=0.03;FS=281.668;HaplotypeScore=14.5159;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=1;MQRankSum=-0.659;QD=0.52;ReadPosRankSum=-6.323;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:66,45:111:90:90,0,495 chrXIV 772638 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.348;DP=109;Dels=0.01;FS=209.467;HaplotypeScore=14.5159;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=1;MQRankSum=-2.691;QD=0.11;ReadPosRankSum=-6.008;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:72,36:108:42:42,0,683 chrXIV 779333 . C A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.676;DP=147;Dels=0.00;FS=408.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.27;MQ0=2;MQRankSum=-6.569;QD=0.20;ReadPosRankSum=-9.469;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:89,58:147:59:59,0,1749 chrXV 46 . A C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=34.0177;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=3;MQRankSum=-1.904;QD=0.32;ReadPosRankSum=-0.226;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:38,11:49:46:46,0,457 chrXV 52 . A C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=53.8241;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=2;MQRankSum=-3.060;QD=0.62;ReadPosRankSum=-0.090;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:42,9:51:63:63,0,723 chrXV 27928 . T A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=152;Dels=0.00;FS=26.448;HaplotypeScore=2.8807;MLEAC=1;MLEAF=0.500;MQ=38.63;MQ0=5;MQRankSum=-1.143;QD=0.11;ReadPosRankSum=-0.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,17:152:46:46,0,3390 chrXV 28642 . C T 708.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=52.367;HaplotypeScore=3.7019;MLEAC=1;MLEAF=0.500;MQ=45.57;MQ0=5;MQRankSum=-6.344;QD=4.69;ReadPosRankSum=0.738;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,42:151:99:738,0,3563 chrXV 29144 . A G 837.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DP=221;Dels=0.00;FS=117.342;HaplotypeScore=3.7129;MLEAC=1;MLEAF=0.500;MQ=52.17;MQ0=1;MQRankSum=-8.724;QD=3.79;ReadPosRankSum=1.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,48:221:99:867,0,5824 chrXV 31220 . A G 383.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;DP=226;Dels=0.00;FS=62.567;HaplotypeScore=4.8042;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=-5.423;QD=1.69;ReadPosRankSum=-7.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,44:226:99:413,0,5553 chrXV 31223 . G T 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;DP=203;Dels=0.00;FS=37.392;HaplotypeScore=6.7880;MLEAC=1;MLEAF=0.500;MQ=55.47;MQ0=0;MQRankSum=-7.471;QD=0.19;ReadPosRankSum=-8.274;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,32:203:68:68,0,5240 chrXV 50002 . C T 4336.01 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=38.04;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:4336,331,0 chrXV 50010 . A T 3863.01 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=32.46;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3863,307,0 chrXV 50012 . C T 3785.01 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=31.28;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3785,310,0 chrXV 60240 . C T 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=183;Dels=0.02;FS=8.057;HaplotypeScore=15.7496;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.287;QD=13.29;ReadPosRankSum=1.171;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2465,177,0 chrXV 79297 . C G 5018.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=30.79;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5018,412,0 chrXV 79304 . A T 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=0.68;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:18:147,18,0 chrXV 79305 . T A 150.06 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=0.88;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:21:183,21,0 chrXV 85398 . C T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490;DP=147;Dels=0.01;FS=130.896;HaplotypeScore=5.6976;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=-0.711;QD=0.23;ReadPosRankSum=-4.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,37:145:64:64,0,1769 chrXV 118287 . C A 336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DP=178;Dels=0.00;FS=2.467;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=14.01;MQ0=103;MQRankSum=4.452;QD=1.89;ReadPosRankSum=-0.164;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,20:178:99:366,0,528 chrXV 216933 . C T 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.918;DP=148;Dels=0.01;FS=203.379;HaplotypeScore=97.6468;MLEAC=1;MLEAF=0.500;MQ=48.41;MQ0=0;MQRankSum=-6.015;QD=1.12;ReadPosRankSum=2.529;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,74:147:99:196,0,1555 chrXV 216949 . C T 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.565;DP=131;Dels=0.02;FS=183.792;HaplotypeScore=88.7405;MLEAC=1;MLEAF=0.500;MQ=47.30;MQ0=0;MQRankSum=-7.080;QD=1.10;ReadPosRankSum=-4.338;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,57:128:99:174,0,1744 chrXV 273921 . G T 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.041;DP=153;Dels=0.00;FS=118.959;HaplotypeScore=8.7731;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=1;MQRankSum=-2.600;QD=0.50;ReadPosRankSum=-4.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,32:153:99:107,0,3611 chrXV 479275 . A T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=212;Dels=0.01;FS=134.282;HaplotypeScore=20.7012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.985;QD=0.50;ReadPosRankSum=-5.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,81:210:99:135,0,1640 chrXV 773264 . G C 8431.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=38.50;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:8431,641,0 chrXV 822924 . G T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;DP=156;Dels=0.00;FS=33.796;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-2.785;QD=0.14;ReadPosRankSum=-4.948;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:109,47:156:52:52,0,3612 chrXV 837032 . G T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.534;DP=119;Dels=0.00;FS=125.158;HaplotypeScore=5.3249;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=-2.143;QD=0.10;ReadPosRankSum=-5.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,21:119:41:41,0,3081 chrXV 882644 . C T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.185;DP=180;Dels=0.00;FS=216.540;HaplotypeScore=2.9960;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=2.179;QD=0.08;ReadPosRankSum=-6.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,21:180:44:44,0,1729 chrXV 909093 . G T 131.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.133;DP=205;Dels=0.02;FS=205.342;HaplotypeScore=47.9757;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.279;QD=0.64;ReadPosRankSum=-5.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,99:200:99:161,0,842 chrXV 936460 . T G 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.374;DP=161;Dels=0.00;FS=94.174;HaplotypeScore=26.3884;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-0.498;QD=0.53;ReadPosRankSum=1.190;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,49:161:99:115,0,3383 chrXV 1000993 . A T 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.018;DP=135;Dels=0.01;FS=202.684;HaplotypeScore=9.5449;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.134;QD=1.18;ReadPosRankSum=-3.970;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:101,32:133:99:189,0,886 chrXV 1031426 . C T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.851;DP=126;Dels=0.00;FS=155.451;HaplotypeScore=13.8622;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=1.513;QD=0.64;ReadPosRankSum=-5.323;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,16:126:99:111,0,1500 chrXV 1090625 . A G 53.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=4.28;MQ0=214;MQRankSum=1.754;QD=0.24;ReadPosRankSum=-0.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,10:221:21:83,0,21 chrXV 1091289 . T G 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=1;MLEAF=0.500;MQ=36.73;MQ0=0;MQRankSum=-0.262;QD=4.30;ReadPosRankSum=-0.671;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,6:27:99:146,0,695 chrXVI 191944 . C T 5607.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.13;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:5607,427,0 chrXVI 216772 . G T 330.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.203;DP=135;Dels=0.00;FS=147.990;HaplotypeScore=29.2715;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-1.074;QD=2.44;ReadPosRankSum=-5.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,42:135:99:360,0,2493 chrXVI 359501 . G T 835.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.492;DP=137;Dels=0.02;FS=341.094;HaplotypeScore=5.7921;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=1;MQRankSum=-0.306;QD=6.09;ReadPosRankSum=-9.020;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:76,58:134:99:865,0,1174 chrXVI 403300 . G T 802.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.432;DP=152;Dels=0.00;FS=215.551;HaplotypeScore=10.4115;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=0.972;QD=5.28;ReadPosRankSum=-4.910;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,70:152:99:832,0,2504 chrXVI 415024 . C G 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.149;DP=104;Dels=0.00;FS=205.483;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-0.886;QD=2.70;ReadPosRankSum=-7.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,42:104:99:311,0,1988 chrXVI 424350 . G T 461.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.619;DP=102;Dels=0.00;FS=212.275;HaplotypeScore=37.3363;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=-1.226;QD=4.52;ReadPosRankSum=-5.408;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:63,39:102:99:491,0,2002 chrXVI 424352 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000;DP=97;Dels=0.00;FS=106.764;HaplotypeScore=38.9369;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=0.175;QD=0.17;ReadPosRankSum=-5.072;SB=-3.079e-03 GT:AD:DP:GQ:PL 0/1:75,22:97:46:46,0,2087 chrXVI 503409 . G A 179.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.834;DP=212;Dels=0.04;FS=443.408;HaplotypeScore=39.3891;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=1;MQRankSum=-1.837;QD=0.84;ReadPosRankSum=-3.349;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:144,59:203:99:209,0,2828 chrXVI 611497 . T G 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.513;DP=172;Dels=0.00;FS=82.595;HaplotypeScore=6.2535;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=1.931;QD=0.97;ReadPosRankSum=-3.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,80:172:99:196,0,2500 chrXVI 667520 . T G 8204.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=36.46;SB=-4.178e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:8204,626,0 chrXVI 677102 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.1301;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.68;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2946,235,0 chrXVI 759400 . T G 7574.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=36.77;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:7574,578,0 chrXVI 837101 . G T 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.292;DP=167;Dels=0.00;FS=112.104;HaplotypeScore=29.4572;MLEAC=1;MLEAF=0.500;MQ=57.24;MQ0=0;MQRankSum=-0.106;QD=1.22;ReadPosRankSum=-5.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,55:167:99:233,0,2657 chrXVI 886471 . A T 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.468;DP=149;Dels=0.00;FS=214.129;HaplotypeScore=7.1025;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-2.351;QD=0.82;ReadPosRankSum=-3.422;SB=-6.465e-03 GT:AD:DP:GQ:PL 0/1:103,46:149:99:152,0,1281 chrXVI 890346 . T A 6878.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.8943;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=35.64;SB=-3.852e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6878,518,0 chrXVI 943050 . C A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.789;DP=145;Dels=0.00;FS=67.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.31;MQ0=59;MQRankSum=-2.489;QD=0.24;ReadPosRankSum=1.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,24:145:65:65,0,994