# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- IncFII_repA PF02387.15 AJD66474.1 - 0.072 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 IncFII RepA protein family HTH_Tnp_1 PF01527.20 AJD66476.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD66476.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD66476.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD66476.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD66476.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD66476.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD66476.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD66476.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD66476.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD66476.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) rve PF00665.26 AJD66477.1 - 6.7e-26 90.8 0.0 1.3e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD66477.1 - 1.6e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD66477.1 - 1.5e-05 25.0 0.5 2.9e-05 24.1 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD66477.1 - 0.027 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 DDE domain Resolvase PF00239.21 AJD66478.1 - 1.6e-45 154.8 0.0 2.3e-45 154.3 0.0 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 AJD66478.1 - 0.017 15.2 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase FANC_SAP PF18081.1 AJD66478.1 - 0.042 14.0 4.2 0.84 9.8 0.0 3.1 2 1 0 2 2 2 0 Fanconi anemia-associated nuclease SAP domain HTH_17 PF12728.7 AJD66478.1 - 0.085 13.1 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PrlF_antitoxin PF15937.5 AJD66479.1 - 0.0038 17.6 0.0 0.0041 17.5 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin MazE_antitoxin PF04014.18 AJD66479.1 - 0.0039 17.1 0.2 0.0055 16.6 0.2 1.3 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 AJD66480.1 - 1.4e-06 28.8 0.1 1.7e-06 28.5 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 AJD66480.1 - 2.5e-05 25.0 0.3 2.6e-05 24.9 0.3 1.1 1 0 0 1 1 1 1 PIN domain VIGSSK PF14773.6 AJD66480.1 - 0.28 11.3 0.8 1.9 8.7 0.1 2.0 2 0 0 2 2 2 0 Helicase-associated putative binding domain, C-terminal ParBc PF02195.18 AJD66481.1 - 0.088 13.1 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 ParB-like nuclease domain LRR_8 PF13855.6 AJD66482.1 - 0.06 13.1 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Leucine rich repeat ANAPC2 PF08672.11 AJD66485.1 - 0.071 13.6 0.0 0.2 12.2 0.0 1.7 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 EF-hand_14 PF17959.1 AJD66485.1 - 0.13 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain DUF1456 PF07308.13 AJD66485.1 - 0.17 12.2 0.1 0.73 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) Nudix_hydro PF18290.1 AJD66486.1 - 0.081 12.9 0.0 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Nudix hydrolase domain Apolipoprotein PF01442.18 AJD66487.1 - 0.00086 19.2 3.7 0.0011 18.9 3.7 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Pex19 PF04614.12 AJD66487.1 - 0.0051 16.6 2.3 0.0054 16.5 2.3 1.0 1 0 0 1 1 1 1 Pex19 protein family DUF885 PF05960.11 AJD66487.1 - 0.024 14.3 2.6 0.028 14.1 2.6 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) SepF PF04472.12 AJD66487.1 - 0.13 12.5 0.2 1.7 9.0 0.0 2.2 2 0 0 2 2 2 0 Cell division protein SepF HTH_34 PF13601.6 AJD66487.1 - 0.14 12.4 0.1 0.19 12.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_31 PF13560.6 AJD66488.1 - 6.4e-06 26.4 0.3 7.2e-06 26.3 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD66488.1 - 5.4e-05 23.2 0.3 8e-05 22.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 AJD66488.1 - 0.013 15.0 0.1 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AJD66488.1 - 0.018 14.8 0.2 0.024 14.4 0.2 1.2 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 AJD66488.1 - 0.038 13.7 0.1 0.12 12.0 0.1 1.9 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_8 PF02954.19 AJD66488.1 - 0.048 13.4 0.5 0.071 12.9 0.5 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family MerR PF00376.23 AJD66488.1 - 0.051 13.3 0.1 0.099 12.4 0.1 1.5 1 1 0 1 1 1 0 MerR family regulatory protein HTH_psq PF05225.16 AJD66488.1 - 0.066 13.0 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_19 PF12844.7 AJD66488.1 - 0.067 13.2 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 AJD66488.1 - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain CbiA PF01656.23 AJD66490.1 - 4e-18 65.7 0.0 4.7e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AJD66490.1 - 5.7e-18 65.4 0.1 1.4e-13 51.1 0.1 2.4 1 1 1 2 2 2 2 AAA domain MipZ PF09140.11 AJD66490.1 - 3.2e-09 36.5 1.4 2e-06 27.3 0.5 2.8 2 1 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 AJD66490.1 - 9.5e-08 31.6 0.1 1.1e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 AJD66490.1 - 1.1e-05 24.8 0.1 1.7e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 AJD66490.1 - 1.2e-05 25.0 0.1 2e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 AJD66490.1 - 0.00011 21.8 0.0 0.00024 20.6 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 AJD66490.1 - 0.00063 19.4 0.2 0.0014 18.3 0.2 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 AJD66490.1 - 0.0056 16.4 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AJD66490.1 - 0.039 13.5 0.1 0.063 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain Replicase PF03090.17 AJD66493.1 - 4e-49 165.8 0.1 6.2e-49 165.2 0.1 1.3 1 0 0 1 1 1 1 Replicase family PriCT_1 PF08708.11 AJD66493.1 - 1.9e-21 75.6 0.3 4.2e-21 74.4 0.3 1.6 1 0 0 1 1 1 1 Primase C terminal 1 (PriCT-1) DUF3619 PF12279.8 AJD66493.1 - 2.5 8.5 4.8 3.2 8.1 3.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3619) TAL_effector PF03377.13 AJD66494.1 - 3.1e-260 840.0 91.9 2.1e-14 53.5 0.3 20.8 16 6 5 21 21 21 18 TAL effector repeat Dimerisation PF08100.11 AJD66494.1 - 2.3e-24 85.2 1.4 29 4.8 0.0 16.4 2 1 15 17 17 17 0 Dimerisation domain RBD PF02196.15 AJD66494.1 - 1.4e-16 60.3 15.1 55 3.9 0.0 15.5 6 6 10 16 16 16 0 Raf-like Ras-binding domain CbiG_C PF01890.16 AJD66494.1 - 6.1e-15 55.8 6.7 65 4.1 0.0 13.3 1 1 13 15 15 15 0 Cobalamin synthesis G C-terminus Cobl PF09469.10 AJD66494.1 - 7.6e-08 32.5 16.2 1e+02 3.2 0.0 13.4 1 1 15 16 16 16 0 Cordon-bleu ubiquitin-like domain DUF3891 PF13030.6 AJD66494.1 - 2.5e-05 24.2 0.2 11 5.7 0.0 5.3 1 1 5 6 6 6 3 Protein of unknown function (DUF3891) Nif11 PF07862.11 AJD66494.1 - 9.2e-05 22.7 17.7 3.3e+02 1.7 0.0 13.7 17 0 0 17 17 17 0 Nif11 domain Tannase PF07519.11 AJD66494.1 - 0.0052 15.7 0.0 3e+02 0.0 0.0 7.0 8 2 2 10 10 10 0 Tannase and feruloyl esterase HD_5 PF13487.6 AJD66494.1 - 9.2 6.6 9.7 46 4.4 0.1 7.4 17 0 0 17 17 17 0 HD domain PRiA4_ORF3 PF07929.11 AJD66496.1 - 9.3e-48 162.2 0.0 1.3e-47 161.8 0.0 1.2 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein PKD PF00801.20 AJD66496.1 - 0.06 13.2 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 PKD domain PemK_toxin PF02452.17 AJD66498.1 - 3.1e-24 85.5 0.0 3.3e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system YihI PF04220.12 AJD66499.1 - 0.0051 16.6 0.0 0.0067 16.2 0.0 1.1 1 0 0 1 1 1 1 Der GTPase activator (YihI) MazE_antitoxin PF04014.18 AJD66499.1 - 0.032 14.2 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin Resolvase PF00239.21 AJD66500.1 - 9.8e-43 145.7 0.6 1.3e-42 145.4 0.6 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_28 PF13518.6 AJD66500.1 - 0.00069 19.7 1.0 0.0041 17.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain CENP-B_N PF04218.13 AJD66500.1 - 0.0017 18.0 0.0 0.0034 17.0 0.0 1.5 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_7 PF02796.15 AJD66500.1 - 0.0049 16.9 0.0 0.0083 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 AJD66500.1 - 0.013 15.3 0.0 0.037 13.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_psq PF05225.16 AJD66500.1 - 0.038 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_29 PF13551.6 AJD66500.1 - 0.042 13.9 1.0 0.33 11.0 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix DUF4158 PF13700.6 AJD66501.1 - 6.2e-05 22.9 0.2 7.6e-05 22.6 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4158) GAF_2 PF13185.6 AJD66501.1 - 0.03 14.6 0.0 0.037 14.3 0.0 1.1 1 0 0 1 1 1 0 GAF domain DDE_Tnp_Tn3 PF01526.17 AJD66502.1 - 9.4e-06 24.6 0.0 9.9e-06 24.6 0.0 1.0 1 0 0 1 1 1 1 Tn3 transposase DDE domain Ribosomal_L9_C PF03948.14 AJD66502.1 - 0.15 12.5 0.0 0.15 12.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain DDE_Tnp_1 PF01609.21 AJD66503.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain UPF0149 PF03695.13 AJD66504.1 - 0.00018 21.8 0.0 0.00023 21.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0149) DDE_Tnp_Tn3 PF01526.17 AJD66505.1 - 8.7e-142 472.5 0.0 1.2e-141 472.0 0.0 1.2 1 0 0 1 1 1 1 Tn3 transposase DDE domain T3SS_needle_E PF08988.10 AJD66505.1 - 8.8 6.6 7.7 63 3.8 0.5 4.3 4 0 0 4 4 4 0 Type III secretion system, cytoplasmic E component of needle DUF4158 PF13700.6 AJD66506.1 - 1.2e-53 181.3 0.0 1.4e-53 181.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4158) PIN_3 PF13470.6 AJD66507.1 - 2.2e-16 60.7 0.0 2.7e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 AJD66507.1 - 5.2e-09 36.6 0.1 2e-08 34.8 0.1 1.8 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 AJD66507.1 - 0.0026 18.0 0.0 0.0061 16.8 0.0 1.5 1 1 0 1 1 1 1 PIN domain PIN_9 PF18477.1 AJD66507.1 - 0.17 12.2 0.1 0.79 10.0 0.1 2.0 1 1 0 1 1 1 0 PIN like domain RHH_6 PF16762.5 AJD66508.1 - 2.3e-38 130.7 0.4 2.5e-38 130.5 0.4 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain Resolvase PF00239.21 AJD66509.1 - 1.1e-42 145.6 0.1 1.9e-42 144.8 0.1 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain UPF0175 PF03683.13 AJD66509.1 - 0.00044 19.9 0.9 0.00082 19.0 0.1 1.8 2 0 0 2 2 1 1 Uncharacterised protein family (UPF0175) HTH_23 PF13384.6 AJD66509.1 - 0.00065 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_22 PF13309.6 AJD66509.1 - 0.001 19.1 0.3 0.0021 18.1 0.3 1.6 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 AJD66509.1 - 0.0013 18.4 1.9 0.009 15.8 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 AJD66509.1 - 0.0019 18.2 0.1 0.0038 17.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.6 AJD66509.1 - 0.0049 16.3 0.0 0.019 14.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 AJD66509.1 - 0.011 15.6 0.3 0.03 14.1 0.3 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_17 PF12728.7 AJD66509.1 - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 AJD66509.1 - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AglB_L1 PF18079.1 AJD66509.1 - 0.014 15.7 0.0 0.057 13.7 0.0 2.0 1 1 0 1 1 1 0 Archaeal glycosylation protein B long peripheral domain HTH_28 PF13518.6 AJD66509.1 - 0.016 15.3 0.1 0.044 13.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 AJD66509.1 - 0.019 14.8 1.1 0.03 14.2 0.1 1.9 2 0 0 2 2 2 0 MarR family HTH_40 PF14493.6 AJD66509.1 - 0.019 15.4 0.0 0.04 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 AJD66509.1 - 0.02 14.7 1.2 0.12 12.1 0.2 2.7 3 1 0 3 3 3 0 Bacterial regulatory proteins, tetR family Mga PF05043.13 AJD66509.1 - 0.023 15.2 0.0 0.043 14.4 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_11 PF08279.12 AJD66509.1 - 0.026 14.5 0.1 0.059 13.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain CENP-B_N PF04218.13 AJD66509.1 - 0.041 13.5 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.12 AJD66509.1 - 0.045 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 AJD66509.1 - 0.066 12.9 0.2 0.16 11.7 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF503 PF04456.12 AJD66509.1 - 0.079 12.8 0.0 0.28 11.1 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF503) HTH_3 PF01381.22 AJD66509.1 - 0.13 12.4 0.9 0.25 11.4 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix HTH_Mga PF08280.11 AJD66509.1 - 0.14 12.2 0.2 0.29 11.2 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TnsD PF15978.5 AJD66509.1 - 0.15 11.0 0.1 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Tnp_1_2 PF13022.6 AJD66509.1 - 0.17 12.1 0.1 0.33 11.1 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD66509.1 - 0.27 11.3 2.1 4 7.5 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix HTH_31 PF13560.6 AJD66509.1 - 1 9.8 6.6 50 4.3 6.6 2.7 1 1 0 1 1 1 0 Helix-turn-helix domain TAL_effector PF03377.13 AJD66510.1 - 3.4e-242 782.3 88.8 3.3e-14 52.9 0.3 19.8 20 2 1 21 21 21 17 TAL effector repeat RBD PF02196.15 AJD66510.1 - 1e-15 57.6 13.5 59 3.8 0.0 14.6 5 3 10 15 15 15 0 Raf-like Ras-binding domain CbiG_C PF01890.16 AJD66510.1 - 8.4e-12 45.7 7.9 55 4.4 0.0 13.0 1 1 14 15 15 15 0 Cobalamin synthesis G C-terminus HTH_32 PF13565.6 AJD66510.1 - 2.4e-11 44.1 12.6 14 6.4 0.0 10.3 2 1 10 14 14 14 5 Homeodomain-like domain SIS_2 PF13580.6 AJD66510.1 - 4.9e-11 42.8 0.4 15 5.6 0.0 8.1 1 1 8 9 9 9 5 SIS domain DUF4287 PF14117.6 AJD66510.1 - 1.5e-09 37.8 0.0 64 3.8 0.0 10.3 2 1 14 16 16 16 0 Domain of unknown function (DUF4287) Nif11 PF07862.11 AJD66510.1 - 2.3e-07 31.0 14.1 74 3.8 0.0 14.3 16 0 0 16 16 16 0 Nif11 domain DUF3891 PF13030.6 AJD66510.1 - 0.00037 20.3 0.1 12 5.6 0.0 4.6 1 1 4 5 5 5 2 Protein of unknown function (DUF3891) DUF4795 PF16043.5 AJD66512.1 - 0.059 13.0 0.1 5.9 6.4 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Creb_binding PF09030.10 AJD66512.1 - 0.68 10.6 10.0 5.4 7.7 2.1 2.2 1 1 1 2 2 2 0 Creb binding ParG PF09274.10 AJD66513.1 - 3.7e-05 23.8 0.0 4.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 ParG ParD PF09386.10 AJD66513.1 - 0.00011 22.5 0.1 0.00014 22.2 0.1 1.2 1 0 0 1 1 1 1 Antitoxin ParD AAA_31 PF13614.6 AJD66514.1 - 3.2e-29 102.1 0.3 1.7e-16 60.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 AJD66514.1 - 2e-20 73.2 0.0 2.5e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 AJD66514.1 - 5.5e-12 45.5 0.9 1.2e-05 24.7 0.1 2.8 2 1 0 2 2 2 2 ATPase MipZ ParA PF10609.9 AJD66514.1 - 1.1e-09 38.1 3.6 5.2e-09 35.9 0.3 2.2 1 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 AJD66514.1 - 8e-09 35.3 0.6 0.00011 21.7 0.4 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 AJD66514.1 - 8.9e-08 31.7 0.4 2.4e-07 30.3 0.1 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 AJD66514.1 - 2.2e-07 30.4 0.1 2e-06 27.3 0.1 2.0 1 1 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 AJD66514.1 - 1.4e-06 27.9 0.8 5.8e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 AJD66514.1 - 0.0018 18.1 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 AJD66514.1 - 0.0058 16.2 0.6 0.015 14.9 0.6 1.8 1 1 0 1 1 1 1 AAA domain SprA-related PF12118.8 AJD66514.1 - 0.0086 15.3 0.6 0.01 15.0 0.6 1.2 1 0 0 1 1 1 1 SprA-related family Methyltransf_24 PF13578.6 AJD66514.1 - 0.01 16.8 0.0 0.023 15.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SRP54 PF00448.22 AJD66514.1 - 0.023 14.3 0.3 0.038 13.6 0.3 1.8 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 AJD66514.1 - 0.03 13.3 0.2 0.076 12.0 0.1 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 AJD66514.1 - 0.14 12.1 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KfrA_N PF11740.8 AJD66515.1 - 4.8e-16 59.5 20.2 4.8e-16 59.5 20.2 3.0 1 1 2 3 3 3 1 Plasmid replication region DNA-binding N-term HAP1_N PF04849.13 AJD66515.1 - 0.0058 15.9 7.0 0.0087 15.3 7.0 1.2 1 0 0 1 1 1 1 HAP1 N-terminal conserved region DUF1664 PF07889.12 AJD66515.1 - 0.04 14.0 1.2 0.084 12.9 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Exonuc_VII_L PF02601.15 AJD66515.1 - 0.4 10.2 15.1 0.52 9.8 15.1 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit Atg14 PF10186.9 AJD66515.1 - 0.43 9.6 4.4 0.67 9.0 4.4 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 AJD66515.1 - 0.55 9.1 14.5 0.066 12.1 9.7 1.8 2 0 0 2 2 2 0 Spc7 kinetochore protein TMPIT PF07851.13 AJD66515.1 - 0.75 9.0 2.9 4.6 6.4 1.8 2.2 1 1 1 2 2 2 0 TMPIT-like protein FH2 PF02181.23 AJD66515.1 - 0.89 8.6 5.2 1.5 7.9 5.2 1.4 1 1 0 1 1 1 0 Formin Homology 2 Domain CALCOCO1 PF07888.11 AJD66515.1 - 3.4 6.4 22.0 3.8 6.3 20.8 1.5 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like AAA_13 PF13166.6 AJD66515.1 - 3.9 6.0 6.5 4.5 5.8 6.5 1.2 1 0 0 1 1 1 0 AAA domain DUF3545 PF12065.8 AJD66517.1 - 0.031 14.3 0.4 0.052 13.6 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3545) DUF3185 PF11381.8 AJD66517.1 - 0.035 14.1 1.2 0.44 10.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) CarboxypepD_reg PF13620.6 AJD66518.1 - 0.14 12.5 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Blt1 PF12754.7 AJD66519.1 - 0.16 12.3 0.3 0.3 11.4 0.1 1.4 1 1 0 1 1 1 0 Blt1 N-terminal domain Peptidase_M48 PF01435.18 AJD66520.1 - 3.2e-13 49.9 0.7 3.8e-13 49.7 0.7 1.1 1 0 0 1 1 1 1 Peptidase family M48 DUF4118 PF13493.6 AJD66520.1 - 1.8e-05 24.5 1.0 3.5e-05 23.6 1.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) Phage_holin_3_6 PF07332.11 AJD66520.1 - 0.0038 17.2 1.4 0.0068 16.4 1.4 1.4 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III RRXRR PF14239.6 AJD66520.1 - 0.037 13.9 0.1 0.094 12.6 0.0 1.7 2 0 0 2 2 2 0 RRXRR protein RseC_MucC PF04246.12 AJD66520.1 - 0.067 13.1 0.2 0.097 12.6 0.2 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC SprT-like PF10263.9 AJD66520.1 - 0.11 12.4 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 SprT-like family DUF2268 PF10026.9 AJD66520.1 - 0.12 11.9 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) YdaS_antitoxin PF15943.5 AJD66520.1 - 0.13 12.1 0.3 0.34 10.8 0.1 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF3348 PF11828.8 AJD66521.1 - 0.026 14.2 0.4 0.32 10.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3348) SLT_2 PF13406.6 AJD66522.1 - 3.7e-104 348.1 0.5 5.6e-104 347.5 0.5 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain PG_binding_1 PF01471.18 AJD66522.1 - 1e-11 44.9 4.2 1e-11 44.9 1.3 2.5 2 0 0 2 2 2 1 Putative peptidoglycan binding domain SLT PF01464.20 AJD66522.1 - 0.0037 16.9 0.0 0.028 14.1 0.0 2.1 1 1 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 AJD66522.1 - 0.025 15.1 0.0 0.065 13.7 0.0 1.8 1 1 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DUF604 PF04646.12 AJD66522.1 - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF604 A_thal_3526 PF09713.10 AJD66522.1 - 0.23 11.8 0.0 8.9 6.7 0.0 2.5 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) DDE_Tnp_Tn3 PF01526.17 AJD66523.1 - 3.7e-147 490.1 0.0 5.2e-147 489.7 0.0 1.2 1 0 0 1 1 1 1 Tn3 transposase DDE domain DUF4158 PF13700.6 AJD66523.1 - 4.6e-29 101.4 3.3 4.6e-29 101.4 0.4 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4158) Phage_integrase PF00589.22 AJD66524.1 - 4e-14 52.8 0.0 9.6e-14 51.5 0.0 1.7 1 0 0 1 1 1 1 Phage integrase family HTH_20 PF12840.7 AJD66524.1 - 0.041 14.0 0.3 4.1 7.6 0.3 3.1 2 1 1 3 3 3 0 Helix-turn-helix domain HWE_HK PF07536.14 AJD66524.1 - 0.092 13.5 0.5 22 5.8 0.0 2.5 2 0 0 2 2 2 0 HWE histidine kinase KfrA_N PF11740.8 AJD66525.1 - 6.9e-24 84.8 12.8 6.9e-24 84.8 12.8 5.5 1 1 3 4 4 4 1 Plasmid replication region DNA-binding N-term CCDC144C PF14915.6 AJD66525.1 - 0.36 9.9 41.4 11 5.0 5.1 3.3 1 1 2 3 3 3 0 CCDC144C protein coiled-coil region Fez1 PF06818.15 AJD66525.1 - 0.74 10.2 44.2 5 7.5 24.0 3.0 1 1 2 3 3 3 0 Fez1 PAS_11 PF14598.6 AJD66525.1 - 0.75 9.9 4.5 0.58 10.3 1.1 2.5 2 1 1 3 3 3 0 PAS domain Tropomyosin_1 PF12718.7 AJD66525.1 - 0.95 9.6 39.2 0.18 11.9 8.2 4.2 1 1 3 4 4 4 0 Tropomyosin like HMMR_N PF15905.5 AJD66525.1 - 5 6.5 33.0 0.082 12.4 20.5 2.2 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal BRE1 PF08647.11 AJD66525.1 - 7.2 6.8 32.2 2.1 8.5 8.7 4.4 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase DUF4407 PF14362.6 AJD66525.1 - 7.3 5.9 48.3 0.81 9.0 24.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) rve PF00665.26 AJD66527.1 - 6.7e-26 90.8 0.0 1.3e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD66527.1 - 1.6e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD66527.1 - 1.5e-05 25.0 0.5 2.9e-05 24.1 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD66527.1 - 0.027 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 DDE domain HTH_Tnp_1 PF01527.20 AJD66528.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD66528.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD66528.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD66528.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD66528.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD66528.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD66528.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD66528.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD66528.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD66528.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) TAL_effector PF03377.13 AJD66529.1 - 1.5e-244 789.8 86.2 3.3e-14 52.9 0.3 19.8 20 2 1 21 21 21 17 TAL effector repeat RBD PF02196.15 AJD66529.1 - 6.5e-16 58.2 13.0 58 3.9 0.0 14.6 7 4 8 15 15 15 0 Raf-like Ras-binding domain CbiG_C PF01890.16 AJD66529.1 - 2.6e-11 44.1 7.6 61 4.2 0.0 12.8 1 1 14 15 15 15 0 Cobalamin synthesis G C-terminus SIS_2 PF13580.6 AJD66529.1 - 1e-10 41.8 0.3 15 5.6 0.0 8.0 1 1 9 11 11 11 1 SIS domain DUF4287 PF14117.6 AJD66529.1 - 3.7e-09 36.6 0.0 55 4.0 0.0 10.0 2 1 10 14 14 14 0 Domain of unknown function (DUF4287) Nif11 PF07862.11 AJD66529.1 - 6.3e-08 32.8 12.4 74 3.8 0.0 14.4 16 0 0 16 16 16 0 Nif11 domain HEAT_2 PF13646.6 AJD66529.1 - 0.29 11.5 6.6 61 4.1 0.1 5.2 2 2 4 6 6 6 0 HEAT repeats Replicase PF03090.17 AJD66530.1 - 4e-49 165.8 0.1 6.2e-49 165.2 0.1 1.3 1 0 0 1 1 1 1 Replicase family PriCT_1 PF08708.11 AJD66530.1 - 1.9e-21 75.6 0.3 4.2e-21 74.4 0.3 1.6 1 0 0 1 1 1 1 Primase C terminal 1 (PriCT-1) DUF3619 PF12279.8 AJD66530.1 - 2.5 8.5 4.8 3.2 8.1 3.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3619) CbiA PF01656.23 AJD66533.1 - 4e-18 65.7 0.0 4.7e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AJD66533.1 - 5.7e-18 65.4 0.1 1.4e-13 51.1 0.1 2.4 1 1 1 2 2 2 2 AAA domain MipZ PF09140.11 AJD66533.1 - 3.2e-09 36.5 1.4 2e-06 27.3 0.5 2.8 2 1 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 AJD66533.1 - 9.5e-08 31.6 0.1 1.1e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 AJD66533.1 - 1.1e-05 24.8 0.1 1.7e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 AJD66533.1 - 1.2e-05 25.0 0.1 2e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 AJD66533.1 - 0.00011 21.8 0.0 0.00024 20.6 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 AJD66533.1 - 0.00063 19.4 0.2 0.0014 18.3 0.2 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 AJD66533.1 - 0.0056 16.4 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AJD66533.1 - 0.039 13.5 0.1 0.063 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain HTH_31 PF13560.6 AJD66535.1 - 6.4e-06 26.4 0.3 7.2e-06 26.3 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD66535.1 - 5.4e-05 23.2 0.3 8e-05 22.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 AJD66535.1 - 0.013 15.0 0.1 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AJD66535.1 - 0.018 14.8 0.2 0.024 14.4 0.2 1.2 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 AJD66535.1 - 0.038 13.7 0.1 0.12 12.0 0.1 1.9 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_8 PF02954.19 AJD66535.1 - 0.048 13.4 0.5 0.071 12.9 0.5 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family MerR PF00376.23 AJD66535.1 - 0.051 13.3 0.1 0.099 12.4 0.1 1.5 1 1 0 1 1 1 0 MerR family regulatory protein HTH_psq PF05225.16 AJD66535.1 - 0.066 13.0 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_19 PF12844.7 AJD66535.1 - 0.067 13.2 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 AJD66535.1 - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Apolipoprotein PF01442.18 AJD66536.1 - 0.00086 19.2 3.7 0.0011 18.9 3.7 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Pex19 PF04614.12 AJD66536.1 - 0.0051 16.6 2.3 0.0054 16.5 2.3 1.0 1 0 0 1 1 1 1 Pex19 protein family DUF885 PF05960.11 AJD66536.1 - 0.024 14.3 2.6 0.028 14.1 2.6 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) SepF PF04472.12 AJD66536.1 - 0.13 12.5 0.2 1.7 9.0 0.0 2.2 2 0 0 2 2 2 0 Cell division protein SepF HTH_34 PF13601.6 AJD66536.1 - 0.14 12.4 0.1 0.19 12.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Nudix_hydro PF18290.1 AJD66537.1 - 0.081 12.9 0.0 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Nudix hydrolase domain ANAPC2 PF08672.11 AJD66538.1 - 0.071 13.6 0.0 0.2 12.2 0.0 1.7 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 EF-hand_14 PF17959.1 AJD66538.1 - 0.13 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain DUF1456 PF07308.13 AJD66538.1 - 0.17 12.2 0.1 0.73 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) LRR_8 PF13855.6 AJD66541.1 - 0.06 13.1 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Leucine rich repeat TrwB_AAD_bind PF10412.9 AJD66545.1 - 8.2e-101 337.7 0.0 9.6e-101 337.5 0.0 1.0 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 AJD66545.1 - 7.6e-20 71.2 0.0 1.2e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 AJD66545.1 - 2.3e-19 69.6 0.0 5.4e-19 68.4 0.0 1.6 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer DUF87 PF01935.17 AJD66545.1 - 0.0017 18.5 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 AJD66545.1 - 0.0043 16.4 0.0 0.0084 15.5 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.7 AJD66545.1 - 0.02 13.8 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain TrwC PF08751.11 AJD66546.1 - 1.6e-81 274.1 5.4 1.6e-81 274.1 5.4 1.9 2 0 0 2 2 2 1 TrwC relaxase AAA_30 PF13604.6 AJD66546.1 - 2e-41 141.9 8.2 6.8e-41 140.1 8.2 1.9 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 AJD66546.1 - 1.1e-09 38.4 0.6 7e-05 22.7 0.1 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase UvrD_C_2 PF13538.6 AJD66546.1 - 1.5e-07 31.1 2.5 1.8e-07 30.8 0.7 2.2 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 AJD66546.1 - 4.1e-07 30.4 1.1 4.1e-07 30.4 1.1 3.5 4 1 0 4 4 4 1 AAA domain PhoH PF02562.16 AJD66546.1 - 7e-06 25.6 4.3 0.013 15.0 0.3 2.6 2 0 0 2 2 2 2 PhoH-like protein Phostensin PF13914.6 AJD66546.1 - 0.06 14.0 0.6 0.24 12.0 0.0 2.3 2 0 0 2 2 2 0 Phostensin PP1-binding and SH3-binding region LUC7 PF03194.15 AJD66546.1 - 0.085 12.5 4.1 0.23 11.1 4.1 1.7 1 0 0 1 1 1 0 LUC7 N_terminus TraI_2B PF18340.1 AJD66546.1 - 0.099 12.7 0.0 0.36 10.9 0.0 2.0 1 0 0 1 1 1 0 DNA relaxase TraI 2B/2B-like domain SH3_13 PF18335.1 AJD66546.1 - 0.12 12.2 0.0 0.53 10.2 0.0 2.1 1 0 0 1 1 1 0 ATP-dependent RecD-like DNA helicase SH3 domain Herpes_Helicase PF02689.14 AJD66546.1 - 0.15 9.9 0.0 0.42 8.5 0.0 1.6 2 0 0 2 2 2 0 Helicase TraI PF07057.11 AJD66546.1 - 0.65 10.1 5.9 0.22 11.7 1.1 2.8 3 0 0 3 3 3 0 DNA helicase TraI AAA_11 PF13086.6 AJD66546.1 - 0.7 9.6 11.5 4.3 7.0 7.9 3.7 2 1 0 2 2 2 0 AAA domain PemK_toxin PF02452.17 AJD66547.1 - 1.1e-18 67.6 0.0 1.2e-18 67.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system DUF3018 PF11455.8 AJD66548.1 - 1.1e-32 111.7 3.4 1.2e-32 111.6 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3018) CPT_N PF16484.5 AJD66549.1 - 0.057 13.4 0.3 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Carnitine O-palmitoyltransferase N-terminus SLT PF01464.20 AJD66551.1 - 3.1e-13 49.4 0.0 5.6e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain T2SSE PF00437.20 AJD66552.1 - 3.8e-64 216.4 0.0 4.8e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein TrbI PF03743.14 AJD66553.1 - 5.6e-51 173.0 1.0 5.6e-51 173.0 1.0 1.6 2 1 0 2 2 2 1 Bacterial conjugation TrbI-like protein DUF4366 PF14283.6 AJD66553.1 - 1.4 8.9 3.4 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) CagX PF03524.15 AJD66554.1 - 2.4e-62 210.4 0.8 2.8e-62 210.2 0.8 1.0 1 0 0 1 1 1 1 Conjugal transfer protein VirB8 PF04335.13 AJD66555.1 - 3.5e-24 85.9 0.0 4.2e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 VirB8 protein TrbL PF04610.14 AJD66556.1 - 6.3e-43 147.0 20.0 6.3e-43 147.0 20.0 1.6 1 1 1 2 2 2 1 TrbL/VirB6 plasmid conjugal transfer protein VirB8 PF04335.13 AJD66557.1 - 0.021 14.7 0.5 1.7 8.4 0.1 2.0 1 1 1 2 2 2 0 VirB8 protein MLTD_N PF06474.12 AJD66558.1 - 0.4 10.9 2.1 0.75 10.0 2.1 1.4 1 0 0 1 1 1 0 MltD lipid attachment motif T4SS PF07996.11 AJD66559.1 - 2.3e-30 106.5 20.3 2.7e-30 106.3 20.3 1.0 1 0 0 1 1 1 1 Type IV secretion system proteins Helicase_C_3 PF13625.6 AJD66559.1 - 0.014 15.5 0.1 0.055 13.6 0.1 1.9 2 0 0 2 2 2 0 Helicase conserved C-terminal domain CR6_interact PF10147.9 AJD66559.1 - 0.03 14.0 1.3 0.061 13.0 1.3 1.5 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Cep57_MT_bd PF06657.13 AJD66559.1 - 0.031 14.7 3.5 0.12 12.9 0.1 2.7 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Lebercilin PF15619.6 AJD66559.1 - 0.058 13.0 4.9 0.11 12.2 0.5 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF2730 PF10805.8 AJD66559.1 - 0.14 12.3 0.8 0.4 10.8 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) SlyX PF04102.12 AJD66559.1 - 0.19 12.4 0.4 0.19 12.4 0.4 3.4 3 1 1 4 4 4 0 SlyX DivIC PF04977.15 AJD66559.1 - 2.6 7.9 7.6 0.98 9.2 0.4 2.8 2 1 1 3 3 3 0 Septum formation initiator HrpB7 PF09486.10 AJD66559.1 - 2.7 8.4 10.9 2.2 8.6 0.3 2.8 2 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) JAKMIP_CC3 PF16034.5 AJD66559.1 - 3.7 7.5 8.0 0.69 9.8 0.8 2.1 2 0 0 2 2 2 0 JAKMIP CC3 domain NYD-SP28 PF14772.6 AJD66559.1 - 4.6 7.4 8.8 1.3 9.2 2.1 2.7 2 1 1 3 3 3 0 Sperm tail CagE_TrbE_VirB PF03135.14 AJD66560.1 - 1.2e-17 64.7 0.0 1.5e-16 61.1 0.0 2.2 1 1 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system AAA_29 PF13555.6 AJD66560.1 - 0.0031 17.2 0.7 0.13 12.0 0.1 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AJD66560.1 - 0.011 16.2 0.0 0.032 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 AJD66560.1 - 0.091 13.0 0.0 0.63 10.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 AJD66560.1 - 0.53 10.3 3.0 0.45 10.6 0.2 2.2 3 0 0 3 3 3 0 Helicase HerA, central domain VirB3 PF05101.13 AJD66561.1 - 2.8e-17 62.7 1.8 3.2e-17 62.5 1.8 1.0 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 AJD66562.1 - 1.4e-20 73.3 1.0 1.7e-20 73.1 1.0 1.1 1 0 0 1 1 1 1 TrbC/VIRB2 family MAM PF00629.23 AJD66563.1 - 0.019 14.9 0.0 0.022 14.7 0.0 1.1 1 0 0 1 1 1 0 MAM domain, meprin/A5/mu Dicer_dimer PF03368.14 AJD66563.1 - 0.17 12.1 0.0 0.21 11.8 0.0 1.1 1 0 0 1 1 1 0 Dicer dimerisation domain DUF4180 PF13788.6 AJD66564.1 - 0.085 12.8 0.0 0.094 12.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4180) rve PF00665.26 AJD66565.1 - 7.1e-25 87.5 0.0 1.4e-24 86.5 0.0 1.5 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AJD66565.1 - 8.9e-12 44.6 0.2 2.3e-11 43.3 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD66565.1 - 1.1e-05 25.5 0.4 2.7e-05 24.2 0.4 1.7 1 0 0 1 1 1 1 HTH-like domain HTH_psq PF05225.16 AJD66565.1 - 0.1 12.4 0.1 0.29 10.9 0.1 1.8 1 0 0 1 1 1 0 helix-turn-helix, Psq domain CoA_binding_2 PF13380.6 AJD66565.1 - 0.16 12.5 0.0 0.42 11.1 0.0 1.7 2 0 0 2 2 2 0 CoA binding domain HTH_Tnp_1 PF01527.20 AJD66566.1 - 1.2e-21 76.7 0.0 1.6e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AJD66566.1 - 1.3e-06 28.0 0.0 3.1e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 AJD66566.1 - 2.2e-06 27.7 0.0 3.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AJD66566.1 - 0.00085 19.5 0.5 0.0087 16.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD66566.1 - 0.0014 18.6 0.0 0.0051 16.8 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn helix HTH_7 PF02796.15 AJD66566.1 - 0.013 15.5 0.1 0.1 12.7 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD66566.1 - 0.033 13.7 0.6 0.79 9.3 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD66566.1 - 0.057 13.7 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD66566.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD66566.1 - 0.5 10.3 3.5 1.1 9.2 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) KORA PF16509.5 AJD66568.1 - 5.2e-12 45.9 0.1 6.8e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor P5CR_dimer PF14748.6 AJD66568.1 - 0.0026 18.0 0.0 0.0045 17.2 0.0 1.4 1 1 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation FumaraseC_C PF10415.9 AJD66568.1 - 0.025 15.0 1.3 2.1 8.8 0.1 2.3 1 1 1 2 2 2 0 Fumarase C C-terminus HTH_28 PF13518.6 AJD66568.1 - 0.069 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NAPRTase_N PF17767.1 AJD66568.1 - 0.076 13.4 0.1 0.097 13.1 0.1 1.3 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ParBc PF02195.18 AJD66569.1 - 9.8e-16 57.8 0.8 6.1e-15 55.3 0.2 2.3 2 0 0 2 2 2 1 ParB-like nuclease domain KorB PF08535.10 AJD66569.1 - 6.7e-08 32.5 1.6 2.9e-07 30.4 0.4 2.6 1 1 1 2 2 2 1 KorB domain YwqJ-deaminase PF14431.6 AJD66569.1 - 0.00081 19.6 0.8 1.1 9.5 0.1 2.5 2 0 0 2 2 2 2 YwqJ-like deaminase PGI PF00342.19 AJD66569.1 - 0.17 10.4 0.4 0.25 9.9 0.4 1.2 1 0 0 1 1 1 0 Phosphoglucose isomerase AAA_31 PF13614.6 AJD66570.1 - 2.9e-25 89.2 0.0 4.1e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AJD66570.1 - 7.4e-16 58.4 0.0 1.3e-15 57.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 AJD66570.1 - 9.8e-11 41.4 0.2 1.2e-09 37.8 0.2 2.1 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 AJD66570.1 - 1.8e-07 30.9 0.0 1.4e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 AJD66570.1 - 7.5e-07 28.6 0.1 6.5e-06 25.5 0.1 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase CLP1_P PF16575.5 AJD66570.1 - 0.0097 15.7 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 AJD66570.1 - 0.027 13.9 0.0 0.19 11.2 0.0 2.1 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ IstB_IS21 PF01695.17 AJD66570.1 - 0.078 12.7 0.1 1.5 8.5 0.0 2.2 1 1 1 2 2 2 0 IstB-like ATP binding protein CoaE PF01121.20 AJD66570.1 - 0.096 12.3 0.0 0.5 10.0 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase RepA_C PF04796.12 AJD66571.1 - 1.9e-31 109.2 0.0 2.7e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Plasmid encoded RepA protein MADF_DNA_bdg PF10545.9 AJD66571.1 - 0.051 13.9 0.0 0.29 11.5 0.0 2.1 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like Zeta_toxin PF06414.12 AJD66572.1 - 1.6e-57 194.0 0.4 2.6e-57 193.3 0.4 1.3 1 0 0 1 1 1 1 Zeta toxin KfrB PF18790.1 AJD66572.1 - 9.5e-08 32.2 2.9 1.4e-06 28.4 0.5 2.8 2 0 0 2 2 2 1 KfrB protein AAA_33 PF13671.6 AJD66572.1 - 1.8e-06 28.2 1.3 7.1e-05 23.0 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 AJD66572.1 - 0.0005 20.5 0.1 0.0013 19.2 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain CHU_C PF13585.6 AJD66572.1 - 0.0097 15.9 0.1 0.12 12.5 0.0 2.7 4 0 0 4 4 4 1 C-terminal domain of CHU protein family TetR_C_15 PF17918.1 AJD66572.1 - 2.5 8.9 6.4 1.3 9.8 3.5 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain CENP-Q PF13094.6 AJD66573.1 - 0.082 13.1 0.2 0.093 12.9 0.2 1.0 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit L_protein_N PF15518.6 AJD66573.1 - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 L protein N-terminus PIN PF01850.21 AJD66574.1 - 8.1e-17 61.9 0.0 9e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 AJD66574.1 - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) MazE_antitoxin PF04014.18 AJD66575.1 - 6.1e-06 26.0 0.0 1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Resolvase PF00239.21 AJD66576.1 - 2.2e-45 154.3 0.0 3.3e-45 153.8 0.0 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 AJD66576.1 - 0.021 14.9 0.1 0.044 13.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase FANC_SAP PF18081.1 AJD66576.1 - 0.26 11.5 4.6 1 9.5 0.0 3.0 2 1 1 3 3 3 0 Fanconi anemia-associated nuclease SAP domain rve_2 PF13333.6 AJD66577.1 - 2.1e-13 50.2 0.1 2.6e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD66577.1 - 1.9e-09 37.2 0.1 2.3e-09 36.9 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AJD66577.1 - 0.0012 19.1 0.0 0.0018 18.5 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AJD66578.1 - 2e-20 73.1 0.2 2.5e-20 72.9 0.2 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD66578.1 - 0.0008 19.7 0.0 0.001 19.3 0.0 1.2 1 0 0 1 1 1 1 DDE domain TAL_effector PF03377.13 AJD66579.1 - 7.9e-272 877.1 93.0 3.7e-14 52.8 0.2 21.8 20 3 2 22 22 22 19 TAL effector repeat Dimerisation PF08100.11 AJD66579.1 - 4.8e-25 87.3 0.0 34 4.6 0.0 17.1 4 2 14 18 18 18 0 Dimerisation domain RBD PF02196.15 AJD66579.1 - 3.1e-17 62.4 17.6 62 3.8 0.0 16.4 4 2 13 17 17 17 0 Raf-like Ras-binding domain CbiG_C PF01890.16 AJD66579.1 - 7e-13 49.2 8.9 58 4.3 0.0 14.1 1 1 16 17 17 17 0 Cobalamin synthesis G C-terminus SIS_2 PF13580.6 AJD66579.1 - 1.7e-12 47.6 0.3 5.3 7.1 0.0 9.0 1 1 11 12 12 12 3 SIS domain HTH_32 PF13565.6 AJD66579.1 - 6.3e-12 45.9 17.0 13 6.5 0.1 11.4 2 1 13 16 16 16 2 Homeodomain-like domain DUF4287 PF14117.6 AJD66579.1 - 1.7e-10 40.9 0.0 72 3.6 0.0 11.3 2 1 16 18 18 18 0 Domain of unknown function (DUF4287) Nif11 PF07862.11 AJD66579.1 - 9.8e-08 32.2 17.6 79 3.7 0.0 15.6 18 0 0 18 18 18 0 Nif11 domain Cobl PF09469.10 AJD66579.1 - 2.3e-05 24.6 20.6 1e+02 3.2 0.0 13.6 1 1 16 17 17 17 0 Cordon-bleu ubiquitin-like domain DUF3891 PF13030.6 AJD66579.1 - 0.00037 20.3 0.1 10 5.8 0.0 4.4 2 2 3 5 5 5 3 Protein of unknown function (DUF3891) Tannase PF07519.11 AJD66579.1 - 0.063 12.2 0.0 3.2e+02 -0.0 0.0 6.0 7 3 5 12 12 12 0 Tannase and feruloyl esterase DDE_Tnp_Tn3 PF01526.17 AJD66580.1 - 9.7e-142 472.3 0.0 1.3e-141 471.9 0.0 1.2 1 0 0 1 1 1 1 Tn3 transposase DDE domain DUF4158 PF13700.6 AJD66581.1 - 1.2e-53 181.3 0.0 1.4e-53 181.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4158) PIN_3 PF13470.6 AJD66582.1 - 2.2e-16 60.7 0.0 2.7e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 AJD66582.1 - 5.2e-09 36.6 0.1 2e-08 34.8 0.1 1.8 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 AJD66582.1 - 0.0026 18.0 0.0 0.0061 16.8 0.0 1.5 1 1 0 1 1 1 1 PIN domain PIN_9 PF18477.1 AJD66582.1 - 0.17 12.2 0.1 0.79 10.0 0.1 2.0 1 1 0 1 1 1 0 PIN like domain RHH_6 PF16762.5 AJD66583.1 - 2.3e-38 130.7 0.4 2.5e-38 130.5 0.4 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain Resolvase PF00239.21 AJD66584.1 - 1.1e-42 145.6 0.1 1.9e-42 144.8 0.1 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain UPF0175 PF03683.13 AJD66584.1 - 0.00044 19.9 0.9 0.00082 19.0 0.1 1.8 2 0 0 2 2 1 1 Uncharacterised protein family (UPF0175) HTH_23 PF13384.6 AJD66584.1 - 0.00065 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_22 PF13309.6 AJD66584.1 - 0.001 19.1 0.3 0.0021 18.1 0.3 1.6 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 AJD66584.1 - 0.0013 18.4 1.9 0.009 15.8 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 AJD66584.1 - 0.0019 18.2 0.1 0.0038 17.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.6 AJD66584.1 - 0.0049 16.3 0.0 0.019 14.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 AJD66584.1 - 0.011 15.6 0.3 0.03 14.1 0.3 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_17 PF12728.7 AJD66584.1 - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 AJD66584.1 - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AglB_L1 PF18079.1 AJD66584.1 - 0.014 15.7 0.0 0.057 13.7 0.0 2.0 1 1 0 1 1 1 0 Archaeal glycosylation protein B long peripheral domain HTH_28 PF13518.6 AJD66584.1 - 0.016 15.3 0.1 0.044 13.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 AJD66584.1 - 0.019 14.8 1.1 0.03 14.2 0.1 1.9 2 0 0 2 2 2 0 MarR family HTH_40 PF14493.6 AJD66584.1 - 0.019 15.4 0.0 0.04 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 AJD66584.1 - 0.02 14.7 1.2 0.12 12.1 0.2 2.7 3 1 0 3 3 3 0 Bacterial regulatory proteins, tetR family Mga PF05043.13 AJD66584.1 - 0.023 15.2 0.0 0.043 14.4 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_11 PF08279.12 AJD66584.1 - 0.026 14.5 0.1 0.059 13.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain CENP-B_N PF04218.13 AJD66584.1 - 0.041 13.5 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.12 AJD66584.1 - 0.045 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 AJD66584.1 - 0.066 12.9 0.2 0.16 11.7 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF503 PF04456.12 AJD66584.1 - 0.079 12.8 0.0 0.28 11.1 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF503) HTH_3 PF01381.22 AJD66584.1 - 0.13 12.4 0.9 0.25 11.4 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix HTH_Mga PF08280.11 AJD66584.1 - 0.14 12.2 0.2 0.29 11.2 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TnsD PF15978.5 AJD66584.1 - 0.15 11.0 0.1 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Tnp_1_2 PF13022.6 AJD66584.1 - 0.17 12.1 0.1 0.33 11.1 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD66584.1 - 0.27 11.3 2.1 4 7.5 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix HTH_31 PF13560.6 AJD66584.1 - 1 9.8 6.6 50 4.3 6.6 2.7 1 1 0 1 1 1 0 Helix-turn-helix domain Bac_DnaA PF00308.18 AJD66585.1 - 7.3e-85 284.3 0.0 1.3e-84 283.4 0.0 1.4 2 0 0 2 2 2 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 AJD66585.1 - 3.4e-30 103.9 0.0 9e-30 102.5 0.0 1.8 2 0 0 2 2 1 1 Bacterial dnaA protein helix-turn-helix DnaA_N PF11638.8 AJD66585.1 - 2.7e-14 52.6 0.0 5.9e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 DnaA N-terminal domain IstB_IS21 PF01695.17 AJD66585.1 - 5.6e-11 42.5 0.0 1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 AJD66585.1 - 4.3e-05 23.9 0.0 0.00011 22.6 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AJD66585.1 - 0.00024 21.5 0.4 0.0008 19.8 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 AJD66585.1 - 0.00059 20.1 4.6 0.38 11.0 0.2 3.5 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 AJD66585.1 - 0.0024 17.9 0.0 0.0051 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Kinesin PF00225.23 AJD66585.1 - 0.003 16.5 0.0 0.0043 16.0 0.0 1.2 1 0 0 1 1 1 1 Kinesin motor domain RuvB_N PF05496.12 AJD66585.1 - 0.0049 16.6 0.0 0.012 15.4 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain ResIII PF04851.15 AJD66585.1 - 0.0057 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 AJD66585.1 - 0.072 12.6 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 AJD66585.1 - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DNA_pol3_beta_2 PF02767.16 AJD66586.1 - 2.9e-45 153.2 0.1 1.4e-36 125.2 0.0 2.7 3 0 0 3 3 3 2 DNA polymerase III beta subunit, central domain DNA_pol3_beta PF00712.19 AJD66586.1 - 1.5e-43 147.7 0.2 1.6e-37 128.3 0.0 3.1 3 0 0 3 3 3 3 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_3 PF02768.15 AJD66586.1 - 1.3e-35 121.9 2.4 1.7e-34 118.2 0.4 2.6 3 0 0 3 3 3 1 DNA polymerase III beta subunit, C-terminal domain Amino_oxidase PF01593.24 AJD66586.1 - 0.11 11.8 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase SMC_N PF02463.19 AJD66587.1 - 1.7e-17 63.6 0.0 2.8e-17 62.9 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AJD66587.1 - 8.8e-12 45.9 0.0 1.3e-11 45.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 AJD66587.1 - 1.8e-06 28.0 0.1 4.4e-05 23.4 0.0 2.3 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 AJD66587.1 - 2.8e-05 24.0 0.0 3.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD66587.1 - 3.5e-05 23.4 0.0 0.00015 21.4 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_27 PF13514.6 AJD66587.1 - 5e-05 23.0 0.0 8.6e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AJD66587.1 - 0.0019 18.7 0.0 0.25 11.8 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AAA_25 PF13481.6 AJD66587.1 - 0.057 13.0 0.4 0.32 10.6 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 AJD66587.1 - 0.13 12.8 0.1 0.58 10.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD66587.1 - 0.17 12.3 8.6 0.19 12.1 0.1 2.8 2 2 0 2 2 2 0 AAA ATPase domain DUF2813 PF11398.8 AJD66587.1 - 0.17 11.1 0.0 6.5 5.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_13 PF13166.6 AJD66587.1 - 0.31 9.7 0.0 0.43 9.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DNA_gyraseB PF00204.25 AJD66589.1 - 7e-58 194.9 0.0 1.1e-57 194.3 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B GyrB_insert PF18053.1 AJD66589.1 - 1.1e-45 155.5 0.0 1.7e-45 154.9 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B subunit insert domain DNA_gyraseB_C PF00986.21 AJD66589.1 - 4.3e-30 103.7 0.1 8.4e-30 102.8 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 AJD66589.1 - 1e-20 74.3 0.0 2.4e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 AJD66589.1 - 1.4e-17 63.7 0.0 4.6e-17 62.1 0.0 1.9 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 AJD66589.1 - 0.094 12.5 0.3 0.19 11.5 0.3 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.6 AJD66589.1 - 0.13 12.8 0.0 0.37 11.3 0.0 1.7 1 0 0 1 1 1 0 Toprim domain SMC_hinge PF06470.13 AJD66589.1 - 0.14 12.4 1.2 0.45 10.8 0.1 2.2 2 0 0 2 2 2 0 SMC proteins Flexible Hinge Domain CPBP PF02517.16 AJD66590.1 - 1.3e-18 67.1 6.8 1.3e-18 67.1 6.8 2.6 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Peptidase_M48 PF01435.18 AJD66591.1 - 6.2e-37 127.3 0.0 8e-37 126.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 DUF4148 PF13663.6 AJD66591.1 - 0.87 9.8 4.7 0.27 11.4 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) TPR_2 PF07719.17 AJD66592.1 - 2.9e-14 52.0 28.3 0.001 19.0 0.0 7.2 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_16 PF13432.6 AJD66592.1 - 8.2e-11 42.4 28.3 0.0022 18.6 3.4 5.5 3 3 2 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 AJD66592.1 - 9.2e-11 41.1 18.3 0.029 14.2 0.0 5.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 AJD66592.1 - 1.1e-10 41.4 26.7 0.0044 17.7 1.1 7.3 4 2 4 8 8 8 3 Tetratricopeptide repeat TPR_19 PF14559.6 AJD66592.1 - 1.9e-10 41.1 41.5 9.8e-06 26.0 6.8 5.6 2 2 2 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 AJD66592.1 - 1.4e-07 31.2 27.3 0.0074 16.4 0.0 7.5 8 0 0 8 8 7 3 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD66592.1 - 2e-07 31.2 18.7 0.00011 22.3 0.1 4.8 3 2 2 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 AJD66592.1 - 6.4e-07 28.9 11.4 0.0065 16.1 0.1 4.3 3 1 1 4 4 4 2 TPR repeat TPR_12 PF13424.6 AJD66592.1 - 4e-06 27.0 26.0 0.0014 18.8 0.2 5.8 3 2 5 8 8 7 3 Tetratricopeptide repeat ChAPs PF09295.10 AJD66592.1 - 2.5e-05 23.5 2.9 7.5e-05 21.9 1.2 2.2 1 1 1 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) TPR_7 PF13176.6 AJD66592.1 - 4.2e-05 23.3 9.5 1 9.6 0.0 6.5 8 0 0 8 8 6 1 Tetratricopeptide repeat TPR_9 PF13371.6 AJD66592.1 - 0.00083 19.5 13.7 0.077 13.2 0.8 4.8 3 1 0 4 4 4 2 Tetratricopeptide repeat DUF4032 PF13224.6 AJD66592.1 - 0.001 19.0 0.3 0.002 18.0 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4032) TPR_10 PF13374.6 AJD66592.1 - 0.0011 18.7 18.4 0.15 12.0 0.0 6.3 6 1 1 7 7 7 2 Tetratricopeptide repeat BTAD PF03704.17 AJD66592.1 - 0.0024 18.3 9.9 0.016 15.6 0.5 3.0 2 1 1 3 3 3 2 Bacterial transcriptional activator domain PPR_long PF17177.4 AJD66592.1 - 0.0028 17.1 2.2 0.0062 15.9 0.4 2.4 2 1 1 3 3 3 1 Pentacotripeptide-repeat region of PRORP TPR_20 PF14561.6 AJD66592.1 - 0.0037 17.5 4.0 0.0037 17.5 4.0 5.9 2 2 4 6 6 6 1 Tetratricopeptide repeat PYNP_C PF07831.13 AJD66592.1 - 0.0093 15.6 0.3 0.045 13.4 0.3 2.2 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain TPR_6 PF13174.6 AJD66592.1 - 0.01 16.4 35.3 8.1 7.3 1.5 8.1 7 1 1 8 8 8 0 Tetratricopeptide repeat PPR PF01535.20 AJD66592.1 - 0.12 12.7 0.7 18 5.8 0.1 4.0 5 0 0 5 5 4 0 PPR repeat ATP13 PF12921.7 AJD66592.1 - 0.13 12.2 0.1 1.4 8.8 0.1 2.4 2 1 0 2 2 2 0 Mitochondrial ATPase expression TPR_4 PF07721.14 AJD66592.1 - 0.17 12.6 16.5 1.1 10.1 0.0 5.8 7 1 1 8 8 4 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 AJD66592.1 - 0.53 10.7 11.8 1.5 9.2 0.8 3.4 2 1 0 2 2 2 0 Alkyl sulfatase dimerisation TPR_17 PF13431.6 AJD66592.1 - 2.3 8.8 23.4 9.8 6.8 0.0 6.3 6 1 1 7 7 6 0 Tetratricopeptide repeat DUF3837 PF12939.7 AJD66592.1 - 4.3 7.8 8.5 2.1 8.8 0.1 3.5 4 0 0 4 4 3 0 Domain of unknown function (DUF3837) TonB_C PF03544.14 AJD66593.1 - 1.7e-22 79.6 0.1 2.7e-22 79.0 0.1 1.3 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AJD66593.1 - 0.00088 19.5 0.1 0.00088 19.5 0.1 2.8 2 1 1 3 3 3 1 TonB C terminal MotA_ExbB PF01618.16 AJD66594.1 - 6.5e-35 119.7 0.9 1.2e-34 118.8 0.9 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 AJD66595.1 - 5.3e-25 88.1 0.1 5.9e-25 87.9 0.1 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF2149 PF09919.9 AJD66595.1 - 0.55 10.5 3.9 0.52 10.6 1.1 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2149) ExbD PF02472.16 AJD66596.1 - 1.2e-23 83.7 2.3 1.4e-23 83.5 2.3 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR PdxJ PF03740.13 AJD66597.1 - 5.7e-82 274.3 0.0 6.4e-82 274.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthesis protein PdxJ DUF4956 PF16316.5 AJD66598.1 - 0.046 13.4 0.0 0.049 13.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4956) PLDc_2 PF13091.6 AJD66599.1 - 1.6e-44 151.0 0.0 2.7e-25 88.8 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AJD66599.1 - 2.1e-12 46.7 0.6 5.9e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.6 AJD66599.1 - 7.7e-05 22.5 7.4 0.00017 21.4 7.4 1.6 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal YjeF_N PF03853.15 AJD66599.1 - 0.027 14.4 0.0 0.42 10.5 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Bax1-I PF01027.20 AJD66601.1 - 0.35 10.7 20.6 0.63 9.8 20.7 1.3 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 ABC2_membrane_5 PF13346.6 AJD66601.1 - 0.42 10.1 6.9 0.95 9.0 6.9 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 AJD66601.1 - 7.8 4.7 9.8 9.3 4.4 9.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2798 PF11391.8 AJD66601.1 - 9.3 6.4 17.2 0.22 11.6 7.8 2.8 2 2 1 3 3 3 0 Protein of unknown function (DUF2798) Radical_SAM PF04055.21 AJD66602.1 - 4.8e-14 53.1 0.1 1e-13 52.0 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 AJD66602.1 - 0.012 15.3 0.1 0.29 10.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) 2OG-FeII_Oxy_3 PF13640.6 AJD66603.1 - 1.1e-06 29.4 0.1 1.7e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily Toluene_X PF03349.16 AJD66604.1 - 1.3e-128 429.3 8.6 1.5e-128 429.1 8.6 1.0 1 0 0 1 1 1 1 Outer membrane protein transport protein (OMPP1/FadL/TodX) DUF2490 PF10677.9 AJD66604.1 - 1e-05 25.6 0.4 1.3 8.9 0.1 3.4 2 2 1 3 3 3 3 Protein of unknown function (DUF2490) Porin_3 PF01459.22 AJD66604.1 - 0.00021 20.9 0.0 0.0006 19.4 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic porin YadA_anchor PF03895.15 AJD66604.1 - 0.017 15.2 0.2 3.5 7.8 0.0 4.0 4 0 0 4 4 4 0 YadA-like membrane anchor domain OMP_b-brl_2 PF13568.6 AJD66604.1 - 0.11 12.6 1.2 1.1 9.2 0.0 2.7 3 0 0 3 3 3 0 Outer membrane protein beta-barrel domain Rhomboid PF01694.22 AJD66605.1 - 2.5e-35 121.7 16.5 3.6e-35 121.2 16.5 1.3 1 0 0 1 1 1 1 Rhomboid family DUF1820 PF08850.11 AJD66606.1 - 7.2e-37 125.8 0.0 8.3e-37 125.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1820) 2-Hacid_dh_C PF02826.19 AJD66607.1 - 2.3e-47 160.6 0.0 5.8e-47 159.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AJD66607.1 - 3.8e-15 55.7 0.0 4.8e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 AJD66607.1 - 0.0009 19.3 0.0 0.0019 18.3 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Peptidase_S41 PF03572.18 AJD66608.1 - 7.1e-55 185.1 0.2 1e-54 184.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.6 AJD66608.1 - 8.5e-14 51.7 1.6 2e-13 50.4 0.1 2.4 3 0 0 3 3 3 1 PDZ domain PDZ_6 PF17820.1 AJD66608.1 - 3e-10 39.8 0.2 3e-10 39.8 0.2 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 AJD66608.1 - 2.7e-06 27.6 0.2 7e-06 26.3 0.2 1.7 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 AJD66608.1 - 1.1e-05 25.3 0.0 8.2e-05 22.5 0.0 2.3 2 0 0 2 2 2 1 Tricorn protease PDZ domain MukB_hinge PF16330.5 AJD66608.1 - 0.033 13.9 0.4 0.074 12.7 0.4 1.5 1 0 0 1 1 1 0 MukB hinge domain TSP_NTD PF17804.1 AJD66608.1 - 0.072 13.4 0.1 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 Tail specific protease N-terminal domain Peptidase_M23 PF01551.22 AJD66609.1 - 5e-28 97.2 0.2 1.1e-27 96.1 0.2 1.6 1 0 0 1 1 1 1 Peptidase family M23 DHR10 PF18595.1 AJD66609.1 - 0.0012 18.9 9.0 0.0012 18.9 9.0 3.4 2 2 1 3 3 3 2 Designed helical repeat protein 10 domain TagF_N PF09867.9 AJD66609.1 - 0.0024 17.9 2.2 0.0024 17.9 2.2 2.4 1 1 1 2 2 2 1 TagF N-terminal domain, Type VI secretion system-associated Rx_N PF18052.1 AJD66609.1 - 0.12 12.7 14.7 0.4 11.0 0.6 3.5 2 1 0 3 3 3 0 Rx N-terminal domain Jnk-SapK_ap_N PF09744.9 AJD66609.1 - 0.41 10.9 28.6 0.1 12.8 9.9 2.4 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Fib_alpha PF08702.10 AJD66609.1 - 0.75 10.0 15.3 0.077 13.2 3.5 2.4 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF3584 PF12128.8 AJD66609.1 - 3.2 5.2 42.8 5.4 4.4 42.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1664 PF07889.12 AJD66609.1 - 6 6.9 16.0 7.7 6.6 3.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 AJD66609.1 - 6.2 7.2 10.4 3.1 8.1 0.3 3.5 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) ATG16 PF08614.11 AJD66609.1 - 7.9 6.6 55.6 0.089 13.0 22.1 2.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Peptidase_M28 PF04389.17 AJD66611.1 - 1.6e-50 171.6 0.2 2.4e-50 171.0 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 AJD66611.1 - 2.8e-07 30.4 0.0 7.4e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 AJD66611.1 - 3.9e-07 30.0 0.1 7.3e-07 29.1 0.1 1.6 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 PepSY_2 PF13670.6 AJD66612.1 - 5.2e-24 84.1 0.5 3.9e-12 46.0 0.2 2.0 1 1 1 2 2 2 2 Peptidase propeptide and YPEB domain PepSY PF03413.19 AJD66612.1 - 0.0053 17.3 1.3 0.67 10.6 0.3 2.7 2 1 0 2 2 2 2 Peptidase propeptide and YPEB domain Chibby PF14645.6 AJD66612.1 - 0.15 12.5 0.2 8.2 6.9 0.2 2.2 1 1 0 1 1 1 0 Chibby family TOBE_2 PF08402.10 AJD66612.1 - 0.19 11.9 0.8 0.38 10.9 0.0 2.0 3 0 0 3 3 3 0 TOBE domain Cellulase PF00150.18 AJD66613.1 - 7.1e-54 183.1 0.5 8.9e-54 182.8 0.5 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_1 PF00232.18 AJD66613.1 - 0.057 11.8 0.0 0.084 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 1 Cellulase PF00150.18 AJD66614.1 - 3.1e-50 171.2 0.2 3.7e-50 170.9 0.2 1.0 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF2778 PF10908.8 AJD66614.1 - 0.088 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2778) Cellulase PF00150.18 AJD66615.1 - 4.7e-52 177.2 0.0 5.5e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) ADH_N PF08240.12 AJD66616.1 - 8.2e-27 93.2 4.0 1.6e-26 92.3 4.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AJD66616.1 - 1.1e-22 80.4 0.1 1.9e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 AJD66616.1 - 2.5e-06 27.0 0.2 4.5e-06 26.1 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 AJD66616.1 - 1.9e-05 24.1 0.0 3.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N_2 PF13602.6 AJD66616.1 - 6e-05 24.1 0.0 0.00013 23.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.15 AJD66616.1 - 0.00021 21.5 0.8 0.00059 20.0 0.2 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Glu_dehyd_C PF16912.5 AJD66616.1 - 0.00053 19.5 0.1 0.00079 19.0 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus 3HCDH_N PF02737.18 AJD66616.1 - 0.055 13.3 0.1 0.09 12.6 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 AJD66616.1 - 0.1 12.7 0.1 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Fer4_20 PF14691.6 AJD66617.1 - 4.5e-36 123.0 0.2 6.7e-36 122.5 0.2 1.2 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 AJD66617.1 - 2.6e-28 99.1 0.1 3.5e-28 98.7 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD66617.1 - 1.3e-10 41.7 1.6 1e-06 29.2 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD66617.1 - 7.9e-09 35.2 0.3 0.0019 17.5 0.5 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD66617.1 - 2.9e-07 30.6 0.3 2.9e-07 30.6 0.3 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 AJD66617.1 - 7.6e-07 28.7 0.1 0.00084 18.7 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 AJD66617.1 - 2.1e-05 23.5 2.9 4.1e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 AJD66617.1 - 2.1e-05 23.9 0.2 4.2e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 AJD66617.1 - 2.6e-05 24.6 0.8 0.16 12.4 0.1 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 AJD66617.1 - 5.3e-05 22.6 3.3 0.095 12.0 0.1 2.8 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FMO-like PF00743.19 AJD66617.1 - 6e-05 21.7 0.0 0.0027 16.2 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like F420_oxidored PF03807.17 AJD66617.1 - 6.7e-05 23.4 0.9 1.5 9.4 0.0 3.8 3 1 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent FAD_oxidored PF12831.7 AJD66617.1 - 0.0005 19.5 0.3 0.0005 19.5 0.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 AJD66617.1 - 0.0006 19.9 0.1 3.2 7.8 0.0 3.3 4 0 0 4 4 3 2 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 AJD66617.1 - 0.0009 18.4 0.4 0.0009 18.4 0.4 2.0 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 AJD66617.1 - 0.0012 18.1 0.6 0.0012 18.1 0.6 2.0 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 AJD66617.1 - 0.0015 17.7 1.3 0.0061 15.7 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A K_oxygenase PF13434.6 AJD66617.1 - 0.0052 16.0 0.0 13 4.8 0.0 3.2 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 AJD66617.1 - 0.011 15.4 1.8 0.011 15.4 1.8 3.4 2 1 1 4 4 4 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 AJD66617.1 - 0.012 14.7 0.2 0.02 14.0 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Amino_oxidase PF01593.24 AJD66617.1 - 0.013 14.8 0.5 0.075 12.3 0.2 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 AJD66617.1 - 0.014 15.2 0.4 0.039 13.8 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 AJD66617.1 - 0.017 15.1 0.3 0.12 12.3 0.2 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding zf-HIT PF04438.16 AJD66617.1 - 0.039 13.8 2.6 0.11 12.4 2.6 1.7 1 0 0 1 1 1 0 HIT zinc finger XdhC_C PF13478.6 AJD66617.1 - 0.13 12.8 0.0 8.8 6.8 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain Oxidored_nitro PF00148.19 AJD66617.1 - 0.16 10.6 0.0 0.82 8.3 0.0 1.9 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase ThiF PF00899.21 AJD66617.1 - 0.18 11.1 0.9 2.8 7.2 0.1 2.3 2 0 0 2 2 2 0 ThiF family AdoHcyase_NAD PF00670.21 AJD66617.1 - 0.51 10.4 3.2 2.9 7.9 0.3 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GATase_2 PF00310.21 AJD66618.1 - 1.8e-152 507.9 0.0 2.3e-152 507.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 AJD66618.1 - 2.8e-147 490.7 0.0 1.4e-145 485.1 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 AJD66618.1 - 1.2e-98 330.0 0.0 6.2e-98 327.7 0.0 2.0 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 AJD66618.1 - 5.4e-76 254.4 2.2 8.1e-76 253.9 2.2 1.2 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.18 AJD66618.1 - 4.9e-08 32.4 3.8 1.5e-05 24.2 4.5 2.3 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Inhibitor_I78 PF11720.8 AJD66619.1 - 5.6e-24 84.0 0.3 8.8e-24 83.4 0.3 1.3 1 0 0 1 1 1 1 Peptidase inhibitor I78 family potato_inhibit PF00280.18 AJD66619.1 - 0.016 15.9 0.1 0.041 14.6 0.0 1.6 2 0 0 2 2 2 0 Potato inhibitor I family Topoisom_I PF01028.20 AJD66620.1 - 2e-29 102.5 0.0 3e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic DNA topoisomerase I, catalytic core Penicil_amidase PF01804.18 AJD66622.1 - 8.4e-60 203.5 3.7 9.8e-60 203.3 3.7 1.0 1 0 0 1 1 1 1 Penicillin amidase NmrA PF05368.13 AJD66623.1 - 2.8e-31 108.9 0.1 3.7e-31 108.5 0.1 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 AJD66623.1 - 6e-19 68.6 1.1 1.1e-18 67.8 1.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 AJD66623.1 - 1.1e-06 28.4 0.4 7.3e-06 25.6 0.3 2.4 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AJD66623.1 - 0.00051 19.2 0.2 0.0009 18.4 0.2 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 AJD66623.1 - 0.05 13.0 0.0 0.09 12.2 0.0 1.5 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase PAC2 PF09754.9 AJD66623.1 - 0.097 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 PAC2 family KR PF08659.10 AJD66623.1 - 0.098 12.6 1.7 0.33 10.8 1.7 1.9 1 1 0 1 1 1 0 KR domain adh_short PF00106.25 AJD66623.1 - 0.13 11.7 1.3 0.23 10.9 1.0 1.6 1 1 0 1 1 1 0 short chain dehydrogenase NAD_binding_4 PF07993.12 AJD66623.1 - 0.19 10.9 1.4 3.2 6.8 0.3 2.1 1 1 0 2 2 2 0 Male sterility protein 3Beta_HSD PF01073.19 AJD66623.1 - 0.2 10.6 0.1 0.78 8.7 0.1 1.8 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 AJD66623.1 - 0.25 10.4 1.8 3.6 6.6 0.6 2.2 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein LysR_substrate PF03466.20 AJD66624.1 - 3.2e-33 114.9 3.5 3.2e-33 114.9 3.5 1.5 1 1 1 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66624.1 - 1.9e-13 50.1 2.7 1.9e-13 50.1 2.7 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD66624.1 - 0.046 13.5 0.1 0.095 12.5 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Glycos_transf_1 PF00534.20 AJD66625.1 - 1e-28 100.0 0.0 1.5e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD66625.1 - 3.2e-22 79.4 0.0 5.9e-22 78.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AJD66625.1 - 6.3e-13 49.1 5.1 1.1e-10 41.7 2.9 2.5 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AJD66625.1 - 2.3e-06 27.9 0.3 7.3e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD66625.1 - 3.6e-06 27.5 8.5 3.6e-06 27.5 8.5 3.2 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain EutK_C PF16365.5 AJD66625.1 - 0.085 12.9 1.8 0.22 11.6 0.1 2.6 3 0 0 3 3 3 0 Ethanolamine utilization protein EutK C-terminus Glycos_transf_1 PF00534.20 AJD66626.1 - 6.6e-27 94.1 0.0 8.7e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD66626.1 - 4.6e-23 82.1 0.0 8.5e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AJD66626.1 - 7.5e-21 74.9 1.4 7.5e-21 74.9 1.4 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AJD66626.1 - 3.3e-13 50.4 7.7 3.3e-13 50.4 7.7 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AJD66626.1 - 4.8e-05 23.7 0.0 0.00011 22.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AJD66626.1 - 0.00065 19.7 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Bac_transf PF02397.16 AJD66627.1 - 7.5e-59 198.4 0.0 1.2e-58 197.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial sugar transferase CoA_binding_3 PF13727.6 AJD66627.1 - 3.7e-17 62.9 1.1 7.5e-16 58.6 1.1 2.4 1 1 0 1 1 1 1 CoA-binding domain DUF3084 PF11283.8 AJD66627.1 - 0.98 9.4 5.6 0.22 11.5 0.3 2.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3084) Epimerase_2 PF02350.19 AJD66628.1 - 3.6e-100 335.2 0.0 4.2e-100 335.0 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.6 AJD66628.1 - 0.0013 19.2 5.6 0.0014 19.1 0.1 2.6 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Wzy_C PF04932.15 AJD66629.1 - 1.2e-13 51.0 1.6 1.2e-13 51.0 1.6 3.6 2 2 1 3 3 3 1 O-Antigen ligase DUF2070 PF09843.9 AJD66629.1 - 0.61 8.3 6.3 1.1 7.5 6.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Glyco_tran_WecB PF03808.13 AJD66630.1 - 3.6e-55 186.5 0.2 4.7e-55 186.1 0.2 1.1 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family Glyco_trans_1_4 PF13692.6 AJD66631.1 - 2.7e-24 86.1 1.4 5.7e-24 85.1 1.4 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 AJD66631.1 - 1.3e-23 83.4 0.0 2e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AJD66631.1 - 4.1e-14 52.9 10.6 6.6e-13 49.0 7.2 3.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AJD66631.1 - 3.7e-11 43.7 12.9 3.7e-11 43.7 12.9 3.5 2 2 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 AJD66631.1 - 4.4e-05 23.3 0.0 7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 AJD66631.1 - 0.0096 16.0 0.1 0.055 13.5 0.1 2.0 1 1 1 2 2 2 1 Glycosyl transferase 4-like Methyltransf_23 PF13489.6 AJD66634.1 - 4.5e-15 55.9 0.0 1.3e-14 54.3 0.0 1.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD66634.1 - 5.4e-08 33.4 0.5 5.8e-07 30.1 0.2 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD66634.1 - 2.7e-07 31.3 0.0 2.4e-06 28.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD66634.1 - 2.4e-05 24.9 0.7 0.0025 18.5 0.2 3.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD66634.1 - 0.0085 15.9 0.0 0.1 12.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Asn_synthase PF00733.21 AJD66635.1 - 6.1e-57 193.9 2.3 7.4e-57 193.6 2.3 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 AJD66635.1 - 4.7e-40 136.3 0.0 9e-40 135.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 AJD66635.1 - 5.8e-35 120.4 0.0 1.7e-34 118.9 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain TylF PF05711.11 AJD66637.1 - 3.6e-13 49.4 0.0 1.9e-11 43.8 0.0 2.1 2 0 0 2 2 2 2 Macrocin-O-methyltransferase (TylF) Methyltransf_24 PF13578.6 AJD66637.1 - 6e-07 30.5 0.1 1.1e-06 29.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Epimerase PF01370.21 AJD66638.1 - 8.4e-38 130.2 0.0 1e-37 129.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AJD66638.1 - 9.8e-34 117.2 0.0 1.6e-33 116.5 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 AJD66638.1 - 2.1e-15 56.6 3.8 4.4e-14 52.3 3.8 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 AJD66638.1 - 6.6e-13 48.3 0.0 9.7e-13 47.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 AJD66638.1 - 9.9e-13 47.8 0.1 2.2e-12 46.7 0.3 1.4 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 AJD66638.1 - 1.2e-05 25.3 1.6 1.8e-05 24.7 1.6 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 AJD66638.1 - 9.2e-05 21.7 0.9 0.0065 15.7 0.1 2.2 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.25 AJD66638.1 - 0.00031 20.3 0.6 0.00053 19.5 0.6 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD66638.1 - 0.0009 19.2 4.4 0.32 10.9 0.4 2.8 3 0 0 3 3 3 2 KR domain GlnE PF03710.15 AJD66638.1 - 0.01 15.2 0.1 0.05 13.0 0.1 1.9 2 0 0 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase RCC1_2 PF13540.6 AJD66638.1 - 0.016 15.0 0.7 0.27 11.1 0.1 2.5 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat DapB_N PF01113.20 AJD66638.1 - 0.089 12.9 0.1 0.19 11.8 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Ldh_1_N PF00056.23 AJD66638.1 - 0.092 12.8 0.2 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Baculo_FP PF03258.14 AJD66638.1 - 0.18 12.0 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 Baculovirus FP protein DUF3106 PF11304.8 AJD66639.1 - 0.027 14.9 1.1 0.027 14.9 1.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3106) SMC_ScpB PF04079.16 AJD66639.1 - 0.054 13.1 0.3 0.13 11.9 0.3 1.6 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB RBD-FIP PF09457.10 AJD66639.1 - 0.068 13.1 0.0 0.25 11.3 0.0 1.9 1 0 0 1 1 1 0 FIP domain Med9 PF07544.13 AJD66639.1 - 5.2 7.2 7.7 4.5 7.4 3.2 2.7 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Polysacc_synt PF01943.17 AJD66640.1 - 4.2e-12 46.0 5.2 4.2e-12 46.0 5.2 2.3 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 AJD66640.1 - 6.7e-10 39.2 6.1 6.7e-10 39.2 6.1 4.2 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 AJD66640.1 - 0.0013 18.0 3.0 0.0073 15.6 3.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein ABC_tran PF00005.27 AJD66641.1 - 3.2e-31 108.7 0.0 5.5e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AJD66641.1 - 6.6e-11 42.4 0.8 9.2e-11 41.9 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 AJD66641.1 - 8.6e-09 35.1 0.1 7.6e-05 22.3 0.0 2.6 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AJD66641.1 - 0.00013 21.6 0.5 0.00032 20.4 0.5 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD66641.1 - 0.00017 22.0 2.7 0.00056 20.3 2.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 AJD66641.1 - 0.0006 19.5 8.8 0.016 14.8 2.9 3.2 2 1 0 2 2 2 2 AAA domain AAA_21 PF13304.6 AJD66641.1 - 0.0018 18.2 0.3 0.07 12.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 AJD66641.1 - 0.0031 17.4 0.1 0.0072 16.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 AJD66641.1 - 0.0063 16.8 1.1 0.1 12.9 1.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD66641.1 - 0.07 13.3 0.3 0.34 11.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.6 AJD66641.1 - 0.25 11.8 0.0 0.42 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AJD66641.1 - 0.71 10.2 4.8 0.32 11.3 0.2 2.8 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit Transglut_core3 PF13471.6 AJD66642.1 - 1.8e-20 73.0 5.6 2.7e-20 72.4 5.6 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily Asn_synthase PF00733.21 AJD66643.1 - 5.2e-44 151.3 0.7 7.2e-44 150.9 0.7 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 AJD66643.1 - 1.7e-11 44.1 0.0 3.1e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 AJD66643.1 - 1e-08 35.5 1.2 6.4e-07 29.6 0.0 2.8 3 0 0 3 3 3 1 Glutamine amidotransferase domain Methyltransf_31 PF13847.6 AJD66645.1 - 3.2e-09 36.8 0.0 4.3e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD66645.1 - 8.3e-09 36.1 0.0 3.4e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD66645.1 - 2.1e-07 31.5 0.0 6e-07 30.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD66645.1 - 7e-07 29.2 0.0 3.6e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD66645.1 - 8.7e-07 29.6 0.0 2.9e-06 27.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 AJD66645.1 - 0.01 15.4 0.0 0.13 11.7 0.0 2.2 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain PqqD PF05402.12 AJD66646.1 - 1.4e-12 47.7 0.0 1.7e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Hpr_kinase_C PF07475.12 AJD66647.1 - 3.8e-07 29.8 0.0 6.8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain RsgA_GTPase PF03193.16 AJD66647.1 - 0.001 19.0 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase ABC_tran PF00005.27 AJD66647.1 - 0.0013 19.3 0.2 0.0022 18.5 0.2 1.3 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 AJD66647.1 - 0.0015 18.7 0.0 0.0021 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD66647.1 - 0.011 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 AJD66647.1 - 0.016 15.3 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 AJD66647.1 - 0.026 14.9 0.0 0.044 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain PEPCK_ATP PF01293.20 AJD66647.1 - 0.036 12.7 0.1 0.05 12.3 0.1 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_18 PF13238.6 AJD66647.1 - 0.049 14.2 0.1 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 AJD66647.1 - 0.059 13.3 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Cytidylate_kin2 PF13189.6 AJD66647.1 - 0.09 12.9 0.4 0.38 10.9 0.1 1.9 2 0 0 2 2 2 0 Cytidylate kinase-like family IstB_IS21 PF01695.17 AJD66647.1 - 0.14 11.8 0.2 0.24 11.1 0.2 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein GTP_EFTU PF00009.27 AJD66647.1 - 0.17 11.4 0.2 0.29 10.7 0.2 1.2 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Sulfotransfer_1 PF00685.27 AJD66648.1 - 3.3e-25 89.1 0.0 5.4e-25 88.4 0.0 1.4 1 1 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 AJD66648.1 - 1.6e-08 35.2 0.1 9.7e-07 29.4 0.0 2.5 2 1 0 3 3 3 1 Sulfotransferase family Acetyltransf_10 PF13673.7 AJD66649.1 - 3.8e-12 46.3 0.0 5.1e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD66649.1 - 1.5e-09 38.1 0.0 1.9e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AJD66649.1 - 1.6e-08 34.9 0.1 2.3e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD66649.1 - 3.4e-07 30.1 0.0 7.9e-07 29.0 0.0 1.5 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 AJD66649.1 - 1.3e-05 25.9 0.0 1.5e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 AJD66649.1 - 0.00033 20.4 0.1 0.00063 19.5 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AJD66649.1 - 0.0059 16.8 0.0 0.0083 16.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AJD66649.1 - 0.049 13.8 0.1 0.11 12.7 0.1 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Collar PF07484.12 AJD66650.1 - 9.1e-26 89.6 0.4 1.5e-25 88.9 0.4 1.4 1 0 0 1 1 1 1 Phage Tail Collar Domain Hamartin PF04388.12 AJD66650.1 - 1.4 7.5 4.3 1.6 7.3 4.3 1.0 1 0 0 1 1 1 0 Hamartin protein Collar PF07484.12 AJD66651.1 - 2.2e-30 104.4 1.9 2.1e-28 98.1 0.5 2.4 1 1 1 2 2 2 2 Phage Tail Collar Domain Collar PF07484.12 AJD66652.1 - 9.1e-26 89.6 0.2 1.9e-25 88.6 0.2 1.6 1 0 0 1 1 1 1 Phage Tail Collar Domain PGM_PMM_I PF02878.16 AJD66652.1 - 0.27 10.9 1.3 0.7 9.6 0.7 1.8 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NTP_transf_5 PF14907.6 AJD66653.1 - 1.1e-42 146.5 2.1 1.4e-42 146.0 2.1 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Penicillinase_R PF03965.16 AJD66654.1 - 1.2e-27 96.5 0.0 1.4e-27 96.4 0.0 1.0 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 AJD66654.1 - 5.3e-05 22.9 0.4 0.00067 19.4 0.4 2.3 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 AJD66654.1 - 0.0014 18.1 0.1 0.021 14.4 0.0 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding FeoC PF09012.10 AJD66654.1 - 0.0017 18.4 0.1 0.0049 16.9 0.0 1.8 2 0 0 2 2 2 1 FeoC like transcriptional regulator PqqD PF05402.12 AJD66654.1 - 0.014 15.7 0.0 0.8 10.1 0.0 2.2 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) EutK_C PF16365.5 AJD66654.1 - 0.034 14.2 0.9 0.081 13.0 0.1 2.0 2 0 0 2 2 2 0 Ethanolamine utilization protein EutK C-terminus TrmB PF01978.19 AJD66654.1 - 0.037 13.9 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 AJD66654.1 - 0.039 13.7 0.0 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain MarR PF01047.22 AJD66654.1 - 0.045 13.7 0.1 0.099 12.6 0.1 1.6 1 1 0 1 1 1 0 MarR family Peptidase_M56 PF05569.11 AJD66655.1 - 6.3e-84 281.7 0.5 1e-83 281.0 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 TFIIA PF03153.13 AJD66655.1 - 0.22 11.5 16.4 0.31 11.0 16.4 1.3 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF3584 PF12128.8 AJD66655.1 - 1.4 6.3 32.7 2 5.9 32.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Golgin_A5 PF09787.9 AJD66655.1 - 8 5.8 21.4 11 5.3 21.4 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Ecm33 PF12454.8 AJD66657.1 - 1.5 9.1 0.0 1.5 9.1 0.0 4.8 4 0 0 4 4 4 0 GPI-anchored cell wall organization protein ECH_2 PF16113.5 AJD66657.1 - 1.5 8.2 6.4 2.2 7.7 6.4 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Sacchrp_dh_NADP PF03435.18 AJD66658.1 - 1.4e-11 44.7 0.1 2.1e-11 44.2 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 AJD66658.1 - 0.00073 19.1 0.2 0.0013 18.3 0.2 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 AJD66658.1 - 0.0019 18.2 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 KR domain Semialdhyde_dh PF01118.24 AJD66658.1 - 0.0035 17.8 0.0 0.0053 17.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 AJD66658.1 - 0.005 16.7 0.8 0.0072 16.2 0.8 1.3 1 0 0 1 1 1 1 NAD(P)H-binding DapB_N PF01113.20 AJD66658.1 - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 2H-phosphodiest PF08975.10 AJD66660.1 - 1.4e-31 108.9 0.0 2.7e-31 107.9 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1868) 2_5_RNA_ligase2 PF13563.6 AJD66660.1 - 0.014 15.4 0.2 0.021 14.7 0.2 1.4 1 1 0 1 1 1 0 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 AJD66660.1 - 0.041 14.1 0.1 5.4 7.3 0.1 2.5 2 0 0 2 2 2 0 LigT like Phosphoesterase TonB_dep_Rec PF00593.24 AJD66661.1 - 2.3e-39 136.6 22.8 2.3e-39 136.6 22.8 2.2 1 1 1 2 2 2 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD66661.1 - 1.1e-20 74.1 0.0 1.9e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD66661.1 - 4.2e-15 56.2 1.1 1.2e-14 54.8 1.1 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain ROK PF00480.20 AJD66662.1 - 1.6e-19 70.5 0.0 1.3e-17 64.3 0.0 2.1 1 1 0 1 1 1 1 ROK family MarR_2 PF12802.7 AJD66662.1 - 0.0026 17.6 0.7 0.0026 17.6 0.7 3.4 4 1 0 4 4 4 1 MarR family HTH_IclR PF09339.10 AJD66662.1 - 0.0051 16.6 0.8 2.6 7.9 0.1 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain GDPD PF03009.17 AJD66663.1 - 1.6e-32 113.3 0.0 2.3e-32 112.7 0.0 1.3 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family RNase_H_2 PF13482.6 AJD66664.1 - 1.8e-38 132.2 0.0 2.3e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DEAD PF00270.29 AJD66665.1 - 5e-27 94.8 0.0 1.2e-26 93.6 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD66665.1 - 3.7e-16 59.5 0.0 1.3e-14 54.5 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 AJD66665.1 - 1.1e-11 45.3 0.1 4e-11 43.5 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF1998) HlyIII PF03006.20 AJD66666.1 - 1.1e-25 90.7 19.7 1.4e-25 90.4 19.7 1.1 1 0 0 1 1 1 1 Haemolysin-III related PhdYeFM_antitox PF02604.19 AJD66667.1 - 3.2e-15 55.7 0.2 4e-15 55.4 0.2 1.1 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system ParE_toxin PF05016.15 AJD66668.1 - 1.3e-19 70.6 0.4 1.4e-19 70.5 0.4 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE adh_short PF00106.25 AJD66669.1 - 6.2e-37 127.0 1.9 9.5e-37 126.3 1.9 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD66669.1 - 8.2e-28 97.5 6.7 1.2e-27 97.0 6.7 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD66669.1 - 3.8e-16 59.5 3.9 6.4e-16 58.8 3.9 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD66669.1 - 2.5e-09 37.0 0.3 4.8e-09 36.0 0.3 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 AJD66669.1 - 0.0018 17.9 1.6 0.011 15.3 0.5 2.3 2 1 0 2 2 2 1 NmrA-like family NAD_binding_4 PF07993.12 AJD66669.1 - 0.0083 15.3 0.1 0.013 14.7 0.1 1.5 1 1 0 1 1 1 1 Male sterility protein Eno-Rase_NADH_b PF12242.8 AJD66669.1 - 0.025 14.3 0.4 0.062 13.1 0.4 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.17 AJD66669.1 - 0.026 13.6 5.8 0.19 10.8 5.8 2.1 1 1 0 1 1 1 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 AJD66669.1 - 0.03 13.7 2.2 0.22 10.9 2.2 2.0 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase DUF1776 PF08643.10 AJD66669.1 - 0.12 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) adh_short_C2 PF13561.6 AJD66670.1 - 6.3e-58 196.1 3.0 7.1e-58 195.9 3.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD66670.1 - 1.3e-49 168.4 1.7 1.6e-49 168.0 1.7 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD66670.1 - 1.9e-12 47.5 4.1 2.6e-12 47.0 4.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD66670.1 - 1.4e-06 28.0 0.4 4.1e-06 26.4 0.4 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N_2 PF13602.6 AJD66670.1 - 0.002 19.2 1.2 0.069 14.2 0.8 2.6 1 1 1 2 2 2 2 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 AJD66670.1 - 0.0023 17.9 0.5 1.5 8.9 0.1 2.4 1 1 1 2 2 2 2 Zinc-binding dehydrogenase GDP_Man_Dehyd PF16363.5 AJD66670.1 - 0.015 14.7 0.2 0.042 13.3 0.2 1.8 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase Ubie_methyltran PF01209.18 AJD66670.1 - 0.048 13.0 0.0 0.062 12.6 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family RmlD_sub_bind PF04321.17 AJD66670.1 - 0.048 12.7 0.5 0.083 12.0 0.5 1.4 1 1 0 1 1 1 0 RmlD substrate binding domain LysR_substrate PF03466.20 AJD66671.1 - 4.6e-39 133.9 4.9 6.6e-39 133.4 4.9 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66671.1 - 1.3e-16 60.2 0.3 3e-16 59.1 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family ATPgrasp_TupA PF14305.6 AJD66672.1 - 3.5e-35 121.9 0.0 6.1e-35 121.1 0.0 1.4 1 1 0 1 1 1 1 TupA-like ATPgrasp Flavodoxin_2 PF02525.17 AJD66675.1 - 5.4e-29 101.3 0.0 6.3e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 AJD66675.1 - 4.1e-09 36.4 0.0 5.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase AIPR PF10592.9 AJD66676.1 - 1.6e-28 100.2 0.0 2.1e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 AIPR protein HTH_Tnp_1 PF01527.20 AJD66677.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD66677.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD66677.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD66677.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD66677.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD66677.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD66677.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD66677.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD66677.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD66677.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD66677.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD66677.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD66677.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD66677.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD66677.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD66677.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD66677.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD66677.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD66677.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD66677.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD66677.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD66678.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD66678.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD66678.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain MCH PF02289.16 AJD66679.1 - 0.041 13.2 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Cyclohydrolase (MCH) DDE_Tnp_1 PF01609.21 AJD66680.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain CsbD PF05532.12 AJD66686.1 - 3.6e-19 68.4 8.2 4.3e-19 68.2 8.2 1.1 1 0 0 1 1 1 1 CsbD-like HDOD PF08668.12 AJD66687.1 - 5.9e-31 107.5 0.0 9.4e-31 106.8 0.0 1.3 1 0 0 1 1 1 1 HDOD domain AHSA1 PF08327.11 AJD66688.1 - 1.4e-21 77.0 0.0 1.6e-21 76.8 0.0 1.0 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 AJD66688.1 - 0.00013 22.3 0.0 0.00014 22.1 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Peptidase_M4_C PF02868.15 AJD66690.1 - 3.1e-51 173.6 0.2 5.7e-51 172.7 0.1 1.5 2 0 0 2 2 2 1 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4 PF01447.18 AJD66690.1 - 2.5e-30 105.9 0.6 4e-30 105.2 0.6 1.3 1 0 0 1 1 1 1 Thermolysin metallopeptidase, catalytic domain Peptidase_M36 PF02128.15 AJD66690.1 - 0.0081 15.4 0.2 0.028 13.6 0.0 1.8 2 0 0 2 2 2 1 Fungalysin metallopeptidase (M36) PLN_propep PF16485.5 AJD66690.1 - 0.016 14.9 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Protealysin propeptide NAD_binding_10 PF13460.6 AJD66691.1 - 1.1e-43 149.3 4.0 1.3e-43 149.1 4.0 1.0 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 AJD66691.1 - 1.1e-06 28.4 0.1 1.6e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 AJD66691.1 - 0.00018 21.0 0.9 0.0003 20.3 0.9 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family BAT PF15915.5 AJD66691.1 - 0.032 14.1 2.9 0.048 13.5 1.7 1.9 2 0 0 2 2 2 0 GAF and HTH_10 associated domain TrkA_N PF02254.18 AJD66691.1 - 0.077 13.3 0.2 0.13 12.5 0.2 1.5 1 0 0 1 1 1 0 TrkA-N domain NUDIX PF00293.28 AJD66692.1 - 2.7e-19 69.5 0.1 3.3e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Peptidase_M48 PF01435.18 AJD66693.1 - 8.3e-15 55.1 0.3 2.2e-14 53.7 0.3 1.8 1 1 0 1 1 1 1 Peptidase family M48 baeRF_family12 PF18856.1 AJD66694.1 - 9.8e-28 97.5 0.1 1.5e-27 96.8 0.1 1.3 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 Host_attach PF10116.9 AJD66694.1 - 4.7e-25 88.8 0.6 9.3e-25 87.8 0.6 1.4 1 1 0 1 1 1 1 Protein required for attachment to host cells baeRF_family10 PF18854.1 AJD66694.1 - 9.2e-08 32.4 0.2 1.1e-07 32.2 0.2 1.0 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 Thioredoxin PF00085.20 AJD66695.1 - 3.4e-12 46.3 0.0 3.9e-12 46.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 AJD66695.1 - 0.0041 16.9 0.0 0.0047 16.7 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AJD66695.1 - 0.078 13.4 0.0 0.54 10.7 0.0 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain Glutaredoxin PF00462.24 AJD66695.1 - 0.15 12.3 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin DUF953 PF06110.11 AJD66695.1 - 0.16 11.6 0.0 0.32 10.6 0.0 1.5 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF953) Sugar_tr PF00083.24 AJD66696.1 - 1.3e-47 162.7 23.8 2.8e-45 155.0 23.8 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AJD66696.1 - 8.1e-42 143.4 66.7 5.7e-35 120.9 39.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily AHSA1 PF08327.11 AJD66697.1 - 4.4e-07 30.2 0.5 1.7e-06 28.2 0.5 1.8 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 AJD66697.1 - 0.0014 19.0 2.2 0.0026 18.0 2.2 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport EcsC PF12787.7 AJD66698.1 - 2.5e-39 135.4 0.6 5e-39 134.5 0.6 1.4 1 1 0 1 1 1 1 EcsC protein family DUF938 PF06080.12 AJD66699.1 - 7.6e-82 274.0 0.0 8.6e-82 273.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_25 PF13649.6 AJD66699.1 - 0.00014 22.5 0.0 0.84 10.4 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 AJD66699.1 - 0.0014 19.4 0.0 0.044 14.5 0.0 2.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD66699.1 - 0.0091 15.9 0.0 0.016 15.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CarboxypepD_reg PF13620.6 AJD66700.1 - 0.0045 17.2 0.1 0.011 16.0 0.1 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 AJD66700.1 - 0.012 15.6 0.2 0.03 14.4 0.2 1.6 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain DUF3613 PF12266.8 AJD66700.1 - 0.3 10.9 3.1 6.1 6.7 1.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3613) BatA PF07584.11 AJD66702.1 - 1.4e-08 35.0 16.2 1.4e-08 35.0 16.2 2.5 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal SIP PF04954.13 AJD66702.1 - 0.43 11.1 9.0 0.076 13.5 1.3 3.0 2 1 1 3 3 3 0 Siderophore-interacting protein DUF58 PF01882.18 AJD66703.1 - 1.5e-21 76.4 0.4 5.9e-21 74.5 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 AJD66704.1 - 5.1e-63 210.8 0.0 9.2e-63 209.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 AJD66704.1 - 2e-12 46.8 3.8 2e-12 46.8 3.8 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 AJD66704.1 - 2.3e-11 43.8 0.0 4e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 AJD66704.1 - 3.5e-05 23.0 0.0 0.00016 20.8 0.0 2.0 1 1 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 AJD66704.1 - 8.4e-05 23.0 0.0 0.00027 21.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 AJD66704.1 - 0.0001 21.8 0.5 0.0038 16.6 0.2 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 AJD66704.1 - 0.00011 21.9 0.0 0.0003 20.5 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 AJD66704.1 - 0.00084 19.1 0.0 0.0066 16.2 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AJD66704.1 - 0.0043 17.4 1.8 0.0074 16.7 0.6 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 AJD66704.1 - 0.012 15.9 0.2 0.086 13.1 0.0 2.5 3 1 0 3 3 3 0 AAA domain AAA_25 PF13481.6 AJD66704.1 - 0.034 13.7 3.6 0.047 13.3 0.1 2.5 2 1 1 3 3 3 0 AAA domain TsaE PF02367.17 AJD66704.1 - 0.045 13.7 0.2 0.081 12.9 0.2 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 AJD66704.1 - 0.086 12.7 0.0 0.27 11.1 0.0 1.8 1 0 0 1 1 1 0 NACHT domain DUF4159 PF13709.6 AJD66705.1 - 7.5e-54 182.3 0.0 8.5e-54 182.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4159) PmbA_TldD PF01523.16 AJD66706.1 - 1.1e-52 179.7 0.1 1.3e-52 179.4 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 AJD66707.1 - 7.3e-58 196.6 0.4 1.2e-57 195.9 0.1 1.5 2 0 0 2 2 2 1 Putative modulator of DNA gyrase TAT_signal PF10518.9 AJD66707.1 - 0.3 11.0 3.1 1.4 8.9 0.0 2.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PmbA_TldD PF01523.16 AJD66708.1 - 6.2e-54 183.7 0.3 1.1e-53 182.9 0.3 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase TAT_signal PF10518.9 AJD66708.1 - 0.028 14.3 0.1 0.12 12.3 0.1 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3099 PF11298.8 AJD66709.1 - 0.023 14.8 1.8 0.81 9.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) ATPase_gene1 PF09527.10 AJD66709.1 - 0.03 14.5 0.1 0.03 14.5 0.1 3.1 2 1 2 4 4 4 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Tmemb_185A PF10269.9 AJD66709.1 - 0.037 13.7 0.1 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 Transmembrane Fragile-X-F protein Holin_2-3 PF13272.6 AJD66709.1 - 0.073 13.4 2.5 0.086 13.1 0.2 2.2 2 1 0 2 2 2 0 Putative 2/3 transmembrane domain holin FBPase PF00316.20 AJD66710.1 - 3.4e-60 202.8 0.0 4.3e-60 202.4 0.0 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Aminotran_1_2 PF00155.21 AJD66711.1 - 3.9e-79 266.5 0.0 4.4e-79 266.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II TetR_C_28 PF17937.1 AJD66711.1 - 0.0077 16.7 0.7 0.05 14.1 0.2 2.5 3 0 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TonB_dep_Rec PF00593.24 AJD66712.1 - 1.7e-45 156.8 31.9 1.8e-45 156.7 29.2 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD66712.1 - 6.1e-19 68.6 0.8 1.7e-18 67.2 0.8 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain RSRP PF17069.5 AJD66712.1 - 0.15 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Arginine/Serine-Rich protein 1 Cupin_2 PF07883.11 AJD66714.1 - 7.7e-12 44.8 0.8 1.2e-11 44.1 0.6 1.4 1 1 1 2 2 2 1 Cupin domain Cupin_7 PF12973.7 AJD66714.1 - 1.5e-05 24.8 0.0 2.1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 AJD66714.1 - 0.00016 21.3 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 AJD66714.1 - 0.00058 19.8 0.0 0.00066 19.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 AJD66714.1 - 0.0053 16.7 0.0 0.0069 16.3 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 AJD66714.1 - 0.012 15.2 0.1 0.031 13.9 0.1 1.8 1 1 0 1 1 1 0 Cupin 3-HAO PF06052.12 AJD66714.1 - 0.034 13.8 0.1 0.041 13.5 0.1 1.3 1 1 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Cupin_6 PF12852.7 AJD66714.1 - 0.042 13.6 0.1 0.049 13.3 0.1 1.1 1 0 0 1 1 1 0 Cupin HgmA PF04209.13 AJD66714.1 - 0.085 11.5 0.0 0.099 11.3 0.0 1.0 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase EutQ PF06249.12 AJD66714.1 - 0.1 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Acetyltransf_14 PF03421.16 AJD66714.1 - 0.11 12.6 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 YopJ Serine/Threonine acetyltransferase Aldedh PF00171.22 AJD66715.1 - 1.1e-166 555.0 0.0 1.2e-166 554.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 AJD66715.1 - 0.0066 16.4 0.1 0.016 15.2 0.1 1.6 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated DUF779 PF05610.11 AJD66716.1 - 9.8e-48 160.4 0.0 1.2e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF779) Ku PF02735.16 AJD66719.1 - 5.2e-29 101.4 0.0 8.8e-29 100.7 0.0 1.4 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain DUF1730 PF08331.10 AJD66719.1 - 0.011 15.6 0.0 0.05 13.5 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1730) DUF2561 PF10812.8 AJD66719.1 - 0.58 10.2 6.9 5.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2561) FMN_dh PF01070.18 AJD66720.1 - 3.3e-127 424.3 0.1 3.8e-127 424.1 0.1 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 AJD66720.1 - 1.6e-06 27.4 1.3 1.4e-05 24.3 0.7 2.4 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 AJD66720.1 - 3e-05 23.6 2.7 4.4e-05 23.0 2.7 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.17 AJD66720.1 - 0.00026 20.2 0.7 0.00042 19.5 0.7 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.14 AJD66720.1 - 0.0019 17.6 0.6 0.19 11.0 0.4 2.3 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 AJD66720.1 - 0.0081 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 AJD66720.1 - 0.0093 15.2 0.1 0.014 14.6 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 AJD66720.1 - 0.018 14.5 0.1 0.15 11.5 0.0 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein Beta-lactamase PF00144.24 AJD66721.1 - 2.4e-62 211.1 5.7 3.5e-62 210.5 5.7 1.2 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 AJD66721.1 - 0.0029 17.2 0.0 0.45 10.1 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase enzyme family FliN_N PF16973.5 AJD66721.1 - 0.085 12.7 0.6 0.22 11.4 0.6 1.7 1 0 0 1 1 1 0 Flagellar motor switch protein FliN N-terminal HisKA_3 PF07730.13 AJD66722.1 - 3.2e-12 46.8 9.6 4.8e-12 46.2 6.0 3.0 2 0 0 2 2 2 1 Histidine kinase HATPase_c_2 PF13581.6 AJD66722.1 - 7.2e-06 26.0 0.1 1.6e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 AJD66722.1 - 0.0012 19.3 0.1 0.0036 17.8 0.0 1.7 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD66723.1 - 2.5e-29 101.7 0.1 3.6e-29 101.2 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD66723.1 - 1.2e-17 63.2 0.0 1.9e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD66723.1 - 6.7e-05 22.5 0.3 0.00019 21.1 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 AJD66723.1 - 0.00094 18.9 0.0 0.0026 17.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD66723.1 - 0.0014 18.4 0.0 0.0041 16.9 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain RepB PF07506.11 AJD66723.1 - 0.014 15.5 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_24 PF13412.6 AJD66723.1 - 0.017 14.7 0.0 0.037 13.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 AJD66723.1 - 0.037 14.5 0.0 0.2 12.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD66723.1 - 0.049 13.1 0.4 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.6 AJD66723.1 - 0.097 12.7 0.1 0.96 9.5 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Terminase_5 PF06056.12 AJD66723.1 - 0.12 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Trans_reg_C PF00486.28 AJD66727.1 - 1.4e-19 69.9 0.1 5.2e-19 68.1 0.1 2.1 2 0 0 2 2 1 1 Transcriptional regulatory protein, C terminal AAA_16 PF13191.6 AJD66727.1 - 4.4e-12 46.7 1.7 4.4e-12 46.7 1.7 3.9 4 2 0 4 4 2 1 AAA ATPase domain TPR_2 PF07719.17 AJD66727.1 - 1.6e-05 24.7 16.9 0.0067 16.5 0.1 6.8 7 0 0 7 7 6 2 Tetratricopeptide repeat AAA_22 PF13401.6 AJD66727.1 - 0.00052 20.3 0.4 0.0026 18.0 0.0 2.5 3 0 0 3 3 2 1 AAA domain TPR_1 PF00515.28 AJD66727.1 - 0.0012 18.6 4.9 0.86 9.5 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 AJD66727.1 - 0.0021 18.3 5.1 18 6.0 0.0 6.5 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 AJD66727.1 - 0.01 16.1 1.9 0.01 16.1 1.9 8.5 8 2 1 9 9 7 0 Tetratricopeptide repeat NACHT PF05729.12 AJD66727.1 - 0.013 15.4 0.8 1.6 8.6 0.2 2.8 2 0 0 2 2 2 0 NACHT domain TPR_8 PF13181.6 AJD66727.1 - 0.033 14.4 0.2 2.8 8.4 0.0 3.5 2 0 0 2 2 2 0 Tetratricopeptide repeat YAcAr PF10686.9 AJD66727.1 - 0.066 13.2 3.6 6.5 6.8 0.3 4.4 3 1 0 3 3 3 0 YspA, cpYpsA-related SLOG family T2SSE PF00437.20 AJD66727.1 - 0.072 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TPR_7 PF13176.6 AJD66727.1 - 0.14 12.3 6.9 0.24 11.5 0.0 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat AAA_23 PF13476.6 AJD66727.1 - 0.19 12.2 0.0 0.32 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AJD66727.1 - 0.23 11.3 0.0 0.41 10.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TPR_19 PF14559.6 AJD66727.1 - 0.34 11.4 34.0 11 6.6 2.4 8.7 5 2 4 9 9 8 0 Tetratricopeptide repeat TPR_10 PF13374.6 AJD66727.1 - 0.72 9.8 17.2 0.31 11.0 0.1 6.0 7 0 0 7 7 6 0 Tetratricopeptide repeat Enoyl_reductase PF12241.8 AJD66728.1 - 2.9e-108 360.6 0.3 3.6e-108 360.4 0.3 1.1 1 0 0 1 1 1 1 Trans-2-enoyl-CoA reductase catalytic region Eno-Rase_NADH_b PF12242.8 AJD66728.1 - 3.3e-35 119.7 0.1 5.7e-35 118.9 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Eno-Rase_FAD_bd PF07055.12 AJD66728.1 - 2.1e-31 108.1 2.4 4.8e-31 107.0 2.4 1.7 1 0 0 1 1 1 1 Enoyl reductase FAD binding domain adh_short_C2 PF13561.6 AJD66728.1 - 0.016 14.8 0.0 0.58 9.7 0.0 2.2 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase DUF997 PF06196.12 AJD66729.1 - 0.51 10.4 0.1 0.51 10.4 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF997) COX6C PF02937.15 AJD66729.1 - 3.5 7.8 5.3 2.1 8.5 0.6 2.5 2 1 1 3 3 3 0 Cytochrome c oxidase subunit VIc PfkB PF00294.24 AJD66730.1 - 4.5e-36 124.7 0.0 2.4e-35 122.3 0.0 1.8 1 1 0 1 1 1 1 pfkB family carbohydrate kinase TonB_dep_Rec PF00593.24 AJD66731.1 - 8.1e-38 131.5 38.1 9.5e-38 131.2 25.1 2.6 1 1 1 2 2 2 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD66731.1 - 7.2e-13 48.3 0.0 8.3e-12 44.8 0.0 2.5 3 0 0 3 3 3 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD66731.1 - 3.5e-11 43.6 1.3 9.2e-11 42.3 0.5 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain Laminin_G_3 PF13385.6 AJD66732.1 - 1.7e-08 34.7 2.2 2.4e-08 34.3 0.4 2.2 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Plant_vir_prot PF01307.17 AJD66733.1 - 0.34 11.2 2.4 0.64 10.3 2.4 1.6 1 1 0 1 1 1 0 Plant viral movement protein CPP1-like PF11833.8 AJD66734.1 - 0.66 9.6 3.4 0.35 10.5 0.6 1.9 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like BaxI_1 PF12811.7 AJD66734.1 - 1.8 8.0 7.9 1.1 8.8 2.5 2.0 1 1 1 2 2 2 0 Bax inhibitor 1 like E1-E2_ATPase PF00122.20 AJD66734.1 - 3 7.3 7.8 0.26 10.8 1.1 1.9 1 1 1 2 2 2 0 E1-E2 ATPase KTSC PF13619.6 AJD66735.1 - 9.8e-20 70.1 0.1 1.1e-19 70.0 0.1 1.0 1 0 0 1 1 1 1 KTSC domain RVT_1 PF00078.27 AJD66736.1 - 3.5e-12 46.3 0.0 7.1e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RB_B PF01857.20 AJD66736.1 - 0.11 12.6 0.3 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Retinoblastoma-associated protein B domain DDE_Tnp_1 PF01609.21 AJD66737.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain HTH_Tnp_1 PF01527.20 AJD66741.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD66741.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD66741.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD66741.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD66741.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD66741.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD66741.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD66741.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD66741.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD66741.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD66741.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD66741.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD66741.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD66741.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD66741.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD66741.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD66741.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD66741.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD66741.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD66741.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD66741.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD66742.1 - 2.7e-32 111.5 0.3 5e-32 110.6 0.1 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD66742.1 - 1.1e-14 54.3 1.9 3.3e-14 52.7 1.9 1.8 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD66742.1 - 2.4e-12 46.8 0.1 4.4e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD66742.1 - 2.2e-10 40.1 0.0 1.2e-09 37.8 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD66742.1 - 2.5e-05 24.5 0.0 3.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AJD66742.1 - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF3416 PF11896.8 AJD66743.1 - 1.9e-50 171.6 3.3 1.9e-50 171.6 3.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3416) GHL6 PF14871.6 AJD66743.1 - 2.4e-06 27.7 0.0 0.025 14.7 0.0 2.5 2 0 0 2 2 2 2 Hypothetical glycosyl hydrolase 6 Alpha-amylase PF00128.24 AJD66743.1 - 7.4e-06 25.7 0.0 8.5e-05 22.3 0.0 2.7 3 1 0 3 3 3 1 Alpha amylase, catalytic domain Melibiase_C PF17801.1 AJD66743.1 - 0.0012 18.9 0.0 0.0033 17.4 0.0 1.7 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain Alpha-amylase PF00128.24 AJD66744.1 - 2.6e-75 254.1 0.0 6.2e-75 252.9 0.0 1.6 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 AJD66744.1 - 1.1e-26 92.8 0.0 2.2e-26 91.8 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Mak_N_cap PF18085.1 AJD66744.1 - 3.7e-08 34.3 0.6 3.7e-08 34.3 0.6 2.4 2 0 0 2 2 2 1 Maltokinase N-terminal cap domain DUF3459 PF11941.8 AJD66744.1 - 0.0032 17.8 2.1 0.0074 16.6 0.1 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Glyco_hydro_77 PF02446.17 AJD66744.1 - 0.021 13.7 0.0 0.031 13.1 0.0 1.2 1 0 0 1 1 1 0 4-alpha-glucanotransferase CBM_48 PF02922.18 AJD66745.1 - 3.2e-27 94.7 0.0 3.7e-23 81.7 0.1 2.6 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase_C PF02806.18 AJD66745.1 - 1.5e-25 89.5 0.0 5.5e-25 87.7 0.0 2.0 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 AJD66745.1 - 6.6e-13 48.9 0.0 8.5e-09 35.4 0.0 2.3 1 1 1 2 2 2 2 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 AJD66745.1 - 0.055 13.7 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Glycogen recognition site of AMP-activated protein kinase Metallophos_2 PF12850.7 AJD66746.1 - 3e-30 105.6 0.2 3.8e-30 105.3 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 AJD66746.1 - 0.0019 18.7 0.3 0.96 9.9 0.0 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase FANC_SAP PF18081.1 AJD66746.1 - 0.12 12.6 0.2 0.34 11.1 0.1 1.8 2 0 0 2 2 2 0 Fanconi anemia-associated nuclease SAP domain Aldo_ket_red PF00248.21 AJD66747.1 - 5.2e-42 144.1 0.0 6.4e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TAT_signal PF10518.9 AJD66747.1 - 0.0023 17.7 5.4 0.0023 17.7 5.4 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 AJD66747.1 - 0.0056 16.0 1.1 0.012 15.0 1.1 1.6 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal COesterase PF00135.28 AJD66748.1 - 2.2e-87 294.1 0.0 3.2e-87 293.5 0.0 1.1 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 AJD66748.1 - 3.2e-09 37.0 3.2 7.8e-05 22.6 0.3 2.3 2 0 0 2 2 2 2 alpha/beta hydrolase fold TAT_signal PF10518.9 AJD66748.1 - 0.23 11.4 10.8 0.25 11.3 8.7 2.3 1 1 1 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Abhydrolase_3 PF07859.13 AJD66749.1 - 6.5e-16 58.8 0.6 4.4e-15 56.1 0.6 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AJD66749.1 - 2.6e-15 56.5 0.1 4.4e-11 42.7 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 AJD66749.1 - 9.4e-08 31.9 0.0 0.00024 20.7 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.8 AJD66749.1 - 9.9e-06 25.0 0.3 0.11 11.8 0.0 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 AJD66749.1 - 2.3e-05 24.3 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase COesterase PF00135.28 AJD66749.1 - 0.00017 20.6 0.1 0.00023 20.2 0.1 1.2 1 0 0 1 1 1 1 Carboxylesterase family Esterase_phd PF10503.9 AJD66749.1 - 0.00061 19.4 1.7 0.0013 18.3 1.7 1.5 1 0 0 1 1 1 1 Esterase PHB depolymerase BAAT_C PF08840.11 AJD66749.1 - 0.0026 17.7 0.0 0.015 15.2 0.0 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.20 AJD66749.1 - 0.014 15.1 0.4 0.19 11.4 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold FSH1 PF03959.13 AJD66749.1 - 0.015 15.0 0.0 0.034 13.8 0.0 1.6 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 AJD66749.1 - 0.071 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_6 PF12697.7 AJD66749.1 - 1.2 9.6 25.5 0.046 14.3 14.5 2.9 1 1 1 2 2 2 0 Alpha/beta hydrolase family FAA_hydrolase PF01557.18 AJD66750.1 - 0.069 12.8 0.1 0.16 11.6 0.1 1.6 1 1 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family DctP PF03480.13 AJD66751.1 - 1.5e-70 237.8 0.0 2e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 TAT_signal PF10518.9 AJD66751.1 - 0.032 14.1 6.5 0.032 14.1 6.5 2.3 2 1 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DctQ PF04290.12 AJD66752.1 - 3.8e-22 78.6 4.7 3.8e-22 78.6 4.7 1.8 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporters, DctQ component FtsX PF02687.21 AJD66752.1 - 0.0017 18.8 1.7 0.0017 18.8 1.7 2.2 2 1 0 2 2 2 1 FtsX-like permease family DUF2975 PF11188.8 AJD66752.1 - 0.58 10.1 6.5 5.5 6.9 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) DctM PF06808.12 AJD66753.1 - 5.8e-104 348.2 56.2 6.6e-104 348.0 56.2 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 AJD66753.1 - 6.4e-05 22.3 31.1 6.4e-05 22.3 31.1 2.6 1 1 1 2 2 2 1 Citrate transporter Glyco_hydro_43 PF04616.14 AJD66754.1 - 1.3e-91 306.9 8.1 1.3e-91 306.9 8.1 1.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 AJD66754.1 - 1e-11 45.0 0.0 1.4e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain DUF1349 PF07081.11 AJD66754.1 - 0.041 13.6 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) NADH_B2 PF14813.6 AJD66754.1 - 0.43 10.4 5.4 0.5 10.2 2.3 2.4 2 0 0 2 2 2 0 NADH dehydrogenase 1 beta subcomplex subunit 2 Peripla_BP_3 PF13377.6 AJD66755.1 - 1.2e-36 126.5 0.5 1.2e-35 123.3 0.1 2.2 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD66755.1 - 9.4e-20 71.2 0.0 1.3e-19 70.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD66755.1 - 4.4e-19 68.0 0.8 7.7e-19 67.2 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD66755.1 - 7.8e-07 28.9 0.0 1.3e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain MarR_2 PF12802.7 AJD66755.1 - 0.0015 18.4 0.0 0.011 15.6 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.22 AJD66755.1 - 0.0053 16.8 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_36 PF13730.6 AJD66755.1 - 0.0096 15.9 0.1 0.019 14.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AJD66755.1 - 0.013 15.4 0.3 0.096 12.7 0.0 2.3 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 AJD66755.1 - 0.015 14.8 0.1 0.031 13.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 AJD66755.1 - 0.015 14.7 1.1 0.03 13.7 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 AJD66755.1 - 0.018 14.8 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 AJD66755.1 - 0.018 15.0 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HHH_5 PF14520.6 AJD66755.1 - 0.055 14.1 0.0 0.14 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_17 PF12728.7 AJD66755.1 - 0.095 12.9 0.0 0.36 11.0 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 AJD66755.1 - 0.099 13.1 0.0 0.98 9.9 0.0 2.3 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 AJD66755.1 - 0.11 12.6 0.1 0.29 11.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 AJD66755.1 - 0.4 10.5 1.4 0.64 9.8 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain KduI PF04962.12 AJD66756.1 - 3.5e-35 121.6 0.0 4.5e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family Cupin_2 PF07883.11 AJD66756.1 - 0.062 13.0 0.6 0.98 9.2 0.0 2.7 2 1 0 2 2 2 0 Cupin domain adh_short_C2 PF13561.6 AJD66757.1 - 1.4e-56 191.6 2.7 1.6e-56 191.5 2.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD66757.1 - 2.5e-52 177.2 1.3 3.1e-52 176.9 1.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD66757.1 - 5.2e-06 26.5 1.0 7.4e-06 26.0 1.0 1.3 1 1 0 1 1 1 1 KR domain Bact_lectin PF18483.1 AJD66757.1 - 0.038 14.0 0.1 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial lectin RmlD_sub_bind PF04321.17 AJD66757.1 - 0.047 12.8 0.1 0.067 12.3 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain LacAB_rpiB PF02502.18 AJD66758.1 - 4.5e-30 104.4 0.1 5.8e-30 104.1 0.1 1.2 1 0 0 1 1 1 1 Ribose/Galactose Isomerase DUF3666 PF12408.8 AJD66758.1 - 6.5e-21 73.3 0.0 1.1e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Ribose-5-phosphate isomerase Lipase_GDSL_2 PF13472.6 AJD66759.1 - 3.9e-18 66.5 1.8 5.6e-18 66.0 1.8 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Cupin_2 PF07883.11 AJD66759.1 - 7.5e-16 57.6 0.0 1.9e-15 56.3 0.0 1.7 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 AJD66759.1 - 1.4e-10 41.2 0.2 3.6e-10 39.9 0.1 1.7 2 0 0 2 2 2 1 AraC-like ligand binding domain Lipase_GDSL PF00657.22 AJD66759.1 - 3.9e-05 23.7 0.0 5.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Cupin_3 PF05899.12 AJD66759.1 - 9.2e-05 22.1 0.0 0.00053 19.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 AJD66759.1 - 0.0023 17.6 0.0 0.0046 16.6 0.0 1.5 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase ARD PF03079.14 AJD66759.1 - 0.081 13.1 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 ARD/ARD' family Translat_reg PF01818.17 AJD66759.1 - 0.22 11.5 0.0 0.43 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage translational regulator Peptidase_M61 PF05299.12 AJD66760.1 - 2.5e-06 27.9 1.5 1.7e-05 25.2 1.5 2.1 1 1 0 1 1 1 1 M61 glycyl aminopeptidase PDZ_6 PF17820.1 AJD66760.1 - 0.022 14.6 0.1 0.053 13.4 0.1 1.7 1 0 0 1 1 1 0 PDZ domain DUF4375 PF14300.6 AJD66761.1 - 7.3e-11 42.4 0.0 1e-10 41.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4375) DUF2442 PF10387.9 AJD66761.1 - 0.00015 22.0 0.0 0.00039 20.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2442) Biopterin_H PF00351.21 AJD66762.1 - 4.7e-50 170.5 0.0 6.2e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Biopterin-dependent aromatic amino acid hydroxylase AsnC_trans_reg PF01037.21 AJD66763.1 - 2.9e-23 81.6 0.0 4.1e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 AJD66763.1 - 1.6e-15 56.6 3.4 3.6e-15 55.5 3.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AJD66763.1 - 2.1e-15 56.0 0.6 3.3e-15 55.3 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 AJD66763.1 - 0.0001 22.1 0.1 0.00024 20.9 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AJD66763.1 - 0.0025 17.7 3.0 0.0042 17.0 3.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AJD66763.1 - 0.017 14.9 2.1 0.047 13.5 2.1 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain GRIN_C PF15235.6 AJD66763.1 - 0.077 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 G protein-regulated inducer of neurite outgrowth C-terminus TonB_dep_Rec PF00593.24 AJD66764.1 - 1.3e-41 144.0 36.0 1.3e-41 144.0 36.0 1.8 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD66764.1 - 7.8e-12 45.7 1.7 1.8e-11 44.5 0.2 2.5 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain Patatin PF01734.22 AJD66765.1 - 1.1e-27 97.5 2.1 6.3e-27 95.1 2.1 2.1 1 1 0 1 1 1 1 Patatin-like phospholipase AIM24 PF01987.17 AJD66766.1 - 2.3e-64 216.9 1.3 2.8e-64 216.6 1.3 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 GYF_2 PF14237.6 AJD66766.1 - 6.3e-12 45.1 0.3 1.1e-11 44.3 0.3 1.5 1 0 0 1 1 1 1 GYF domain 2 ABC_tran PF00005.27 AJD66767.1 - 9.1e-22 78.0 0.0 1.3e-21 77.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD66767.1 - 4.8e-10 39.7 0.5 9.3e-05 22.4 0.3 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 AJD66767.1 - 7.2e-05 22.9 0.0 0.00044 20.3 0.0 1.9 1 1 1 2 2 2 1 50S ribosome-binding GTPase SMC_N PF02463.19 AJD66767.1 - 9.2e-05 22.0 0.0 0.0053 16.2 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 AJD66767.1 - 0.00027 21.1 0.0 0.0007 19.8 0.0 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_15 PF13175.6 AJD66767.1 - 0.00049 19.9 0.2 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 AJD66767.1 - 0.0026 18.3 0.0 0.0036 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD66767.1 - 0.0046 17.4 0.1 0.095 13.1 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AJD66767.1 - 0.005 17.1 0.3 0.035 14.4 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD66767.1 - 0.01 15.6 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 AJD66767.1 - 0.023 14.4 0.0 0.059 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 AJD66767.1 - 0.035 14.0 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 AJD66767.1 - 0.041 13.8 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 AJD66767.1 - 0.042 13.2 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 AJD66767.1 - 0.045 14.1 1.7 0.24 11.8 1.6 2.1 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 AJD66767.1 - 0.047 14.1 0.0 0.065 13.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 AJD66767.1 - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region FA_desaturase PF00487.24 AJD66768.1 - 2.3e-12 47.3 23.6 7.7e-12 45.6 23.6 1.8 1 1 0 1 1 1 1 Fatty acid desaturase DDE_Tnp_ISL3 PF01610.17 AJD66768.1 - 0.014 15.1 1.9 0.024 14.3 1.9 1.3 1 0 0 1 1 1 0 Transposase TraL PF07178.11 AJD66768.1 - 0.76 10.3 6.8 0.19 12.2 0.7 2.3 2 0 0 2 2 2 0 TraL protein EF-hand_5 PF13202.6 AJD66769.1 - 1.4e-13 49.7 0.1 7.1e-05 22.1 0.0 3.2 3 0 0 3 3 3 3 EF hand EF-hand_1 PF00036.32 AJD66769.1 - 6.3e-13 47.3 0.0 0.0002 20.7 0.0 3.2 3 0 0 3 3 3 3 EF hand EF-hand_7 PF13499.6 AJD66769.1 - 1.7e-12 47.6 2.0 4.1e-05 23.9 0.1 3.0 1 1 1 2 2 2 2 EF-hand domain pair EF-hand_6 PF13405.6 AJD66769.1 - 9.5e-11 40.7 1.3 0.028 14.3 0.0 3.2 2 1 1 3 3 3 3 EF-hand domain EF-hand_8 PF13833.6 AJD66769.1 - 1.5e-07 31.1 0.8 0.0014 18.4 0.1 3.2 2 1 1 3 3 3 2 EF-hand domain pair SPARC_Ca_bdg PF10591.9 AJD66769.1 - 0.00024 21.4 0.0 2 8.8 0.0 2.9 1 1 1 2 2 2 2 Secreted protein acidic and rich in cysteine Ca binding region Excalibur PF05901.11 AJD66769.1 - 0.0041 17.7 2.9 1.3 9.7 0.1 3.2 3 0 0 3 3 3 1 Excalibur calcium-binding domain Dockerin_1 PF00404.18 AJD66769.1 - 0.083 13.1 0.0 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Dockerin type I domain ABC_tran PF00005.27 AJD66770.1 - 2.1e-33 115.7 0.0 2.8e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD66770.1 - 2.6e-08 34.0 0.0 0.0073 16.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AJD66770.1 - 0.00052 19.7 0.1 0.001 18.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AJD66770.1 - 0.0018 18.2 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 AJD66770.1 - 0.003 18.0 0.4 0.0071 16.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 AJD66770.1 - 0.0044 16.8 0.4 0.037 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AJD66770.1 - 0.0058 16.9 0.0 0.016 15.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AJD66770.1 - 0.0086 16.2 0.7 0.34 11.1 0.1 2.9 2 1 1 3 3 3 1 AAA domain MMR_HSR1 PF01926.23 AJD66770.1 - 0.071 13.2 0.0 0.14 12.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 AJD66770.1 - 0.073 13.6 0.1 0.11 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 AJD66770.1 - 0.087 12.2 0.0 0.2 11.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 AJD66770.1 - 0.088 12.2 0.0 2 7.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 AJD66770.1 - 0.093 12.3 0.2 1 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 AJD66770.1 - 0.22 11.2 0.1 0.45 10.2 0.1 1.5 2 0 0 2 2 2 0 AAA domain OpuAC PF04069.12 AJD66771.1 - 6e-58 196.4 0.2 8e-58 196.0 0.2 1.1 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 AJD66771.1 - 1.4e-22 80.3 11.6 2.3e-22 79.6 11.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Aminotran_5 PF00266.19 AJD66772.1 - 5.8e-24 84.7 0.0 7.6e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V FGE-sulfatase PF03781.16 AJD66773.1 - 1.3e-29 103.6 3.8 3.1e-21 76.1 0.6 2.3 1 1 1 2 2 2 2 Sulfatase-modifying factor enzyme 1 DinB_2 PF12867.7 AJD66773.1 - 1e-08 35.8 10.4 6.1e-08 33.2 8.0 3.0 2 1 0 2 2 2 1 DinB superfamily Methyltransf_33 PF10017.9 AJD66774.1 - 9.5e-101 337.0 0.0 1.1e-100 336.8 0.0 1.0 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Methyltransf_25 PF13649.6 AJD66774.1 - 0.052 14.3 0.0 0.32 11.7 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase domain Couple_hipA PF13657.6 AJD66775.1 - 6.6e-23 81.2 0.0 1.2e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 HipA N-terminal domain HipA_C PF07804.12 AJD66775.1 - 0.015 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 HipA-like C-terminal domain HTH_31 PF13560.6 AJD66776.1 - 3.4e-10 40.1 0.6 5.4e-10 39.5 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD66776.1 - 3.9e-09 36.4 0.3 9.1e-09 35.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AJD66776.1 - 1.5e-05 24.9 0.8 3.9e-05 23.6 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 AJD66776.1 - 0.01 15.7 0.2 0.024 14.5 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain POR PF01558.18 AJD66777.1 - 1e-21 77.8 0.7 1.7e-21 77.1 0.7 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 AJD66777.1 - 0.00016 21.5 1.7 0.00039 20.2 1.7 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_C PF02780.20 AJD66777.1 - 0.17 11.8 0.0 0.38 10.6 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPR_12 PF13424.6 AJD66778.1 - 0.00098 19.4 7.1 0.13 12.6 0.5 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD66778.1 - 0.0057 17.4 0.6 0.0057 17.4 0.6 4.3 4 2 1 5 5 5 1 Tetratricopeptide repeat TPR_2 PF07719.17 AJD66778.1 - 0.0076 16.3 5.0 0.25 11.5 0.2 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 AJD66778.1 - 0.0096 16.6 0.8 0.0096 16.6 0.8 3.3 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 AJD66778.1 - 0.032 14.1 0.5 0.032 14.1 0.5 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 AJD66778.1 - 1.4 9.8 5.3 34 5.4 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD66778.1 - 2.8 8.8 0.1 2.8 8.8 0.1 5.2 5 0 0 5 5 5 0 Tetratricopeptide repeat Mem_trans PF03547.18 AJD66779.1 - 1.2e-23 83.2 24.2 7.9e-14 50.9 13.6 2.0 2 0 0 2 2 2 2 Membrane transport protein SBF PF01758.16 AJD66779.1 - 1.8e-05 24.5 10.4 1.8e-05 24.5 10.4 2.4 2 0 0 2 2 2 1 Sodium Bile acid symporter family CbiA PF01656.23 AJD66780.1 - 2.2e-17 63.3 0.0 2.7e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AJD66780.1 - 1.9e-13 50.7 0.2 1.7e-12 47.6 0.1 2.0 1 1 1 2 2 2 1 AAA domain ParA PF10609.9 AJD66780.1 - 8.2e-09 35.3 2.8 2.3e-08 33.8 0.2 2.1 1 1 1 2 2 2 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 AJD66780.1 - 2.3e-06 27.1 0.1 7.5e-06 25.4 0.1 1.7 1 1 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 AJD66780.1 - 2.4e-05 23.7 0.3 3.5e-05 23.2 0.3 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 AJD66780.1 - 0.00012 21.5 1.8 0.0011 18.3 0.1 2.0 1 1 1 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 AJD66780.1 - 0.00057 19.4 0.0 0.00084 18.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 AJD66780.1 - 0.0019 17.8 0.2 0.0045 16.6 0.2 1.7 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 AJD66780.1 - 0.0037 17.1 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop adh_short_C2 PF13561.6 AJD66780.1 - 0.0053 16.3 0.1 0.0081 15.7 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase SRP54 PF00448.22 AJD66780.1 - 0.027 14.1 0.8 0.059 13.0 0.8 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 AJD66780.1 - 0.032 13.7 0.0 0.058 12.9 0.0 1.6 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_16 PF13191.6 AJD66780.1 - 0.035 14.5 0.1 0.047 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.15 AJD66780.1 - 0.046 13.0 0.1 0.065 12.5 0.1 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_24 PF13479.6 AJD66780.1 - 0.13 11.9 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.6 AJD66780.1 - 0.21 11.4 0.8 3.6 7.3 0.5 2.1 2 0 0 2 2 2 0 AAA domain His_Phos_1 PF00300.22 AJD66781.1 - 9.1e-15 54.9 2.0 2e-14 53.8 1.6 1.6 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) DUF218 PF02698.17 AJD66781.1 - 0.051 13.6 0.0 0.064 13.3 0.0 1.2 1 0 0 1 1 1 0 DUF218 domain YceI PF04264.13 AJD66782.1 - 2.6e-20 73.5 0.0 3.1e-20 73.2 0.0 1.0 1 0 0 1 1 1 1 YceI-like domain PLDc_2 PF13091.6 AJD66783.1 - 4e-34 117.4 0.0 2.4e-18 66.3 0.0 3.2 3 0 0 3 3 3 3 PLD-like domain PLDc PF00614.22 AJD66783.1 - 3.8e-06 26.8 5.0 0.007 16.5 0.0 2.9 3 0 0 3 3 3 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 AJD66783.1 - 0.17 11.0 0.2 4.9 6.3 0.0 2.7 3 0 0 3 3 3 0 Archaeal transcriptional regulator TrmB 4HBT PF03061.22 AJD66784.1 - 4.4e-14 52.6 0.8 6.7e-14 52.0 0.8 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyltransferase PF01553.21 AJD66785.1 - 8e-21 74.1 0.0 1.6e-20 73.1 0.0 1.4 1 1 0 1 1 1 1 Acyltransferase Hydrolase_4 PF12146.8 AJD66786.1 - 5.5e-13 48.7 0.0 7.1e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD66786.1 - 1.3e-12 47.9 0.1 3.7e-10 39.9 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD66786.1 - 6e-12 46.6 10.9 8.6e-12 46.1 10.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 AJD66786.1 - 0.00038 20.1 0.0 0.64 9.5 0.0 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 AJD66786.1 - 0.0017 18.2 0.0 0.0025 17.7 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.20 AJD66786.1 - 0.047 13.8 0.2 0.13 12.3 0.2 1.6 1 1 1 2 2 2 0 Thioesterase domain Esterase PF00756.20 AJD66786.1 - 0.05 13.3 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative esterase TPR_19 PF14559.6 AJD66788.1 - 5.1e-21 75.0 45.7 6.5e-05 23.4 0.4 7.4 4 1 5 9 9 9 7 Tetratricopeptide repeat TPR_2 PF07719.17 AJD66788.1 - 3e-20 70.7 13.3 9.4e-05 22.2 0.0 9.4 9 0 0 9 9 9 3 Tetratricopeptide repeat TPR_16 PF13432.6 AJD66788.1 - 3.3e-16 59.6 71.0 1.8e-06 28.5 8.5 9.0 8 3 2 10 10 8 5 Tetratricopeptide repeat TPR_14 PF13428.6 AJD66788.1 - 1.1e-15 56.9 77.9 0.0055 17.4 5.2 12.4 3 2 10 13 13 13 7 Tetratricopeptide repeat TPR_1 PF00515.28 AJD66788.1 - 4.4e-15 54.8 1.5 0.00014 21.5 0.0 7.7 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD66788.1 - 8.1e-10 38.1 0.3 0.069 13.4 0.0 6.1 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 AJD66788.1 - 1.1e-09 38.5 36.8 0.00043 20.5 0.0 7.6 6 2 2 9 9 8 5 Tetratricopeptide repeat TPR_11 PF13414.6 AJD66788.1 - 1.7e-09 37.2 8.7 0.0041 16.8 0.0 6.8 7 0 0 7 7 7 3 TPR repeat TPR_17 PF13431.6 AJD66788.1 - 9.5e-09 35.1 11.3 0.35 11.3 0.0 7.2 8 1 0 8 8 7 3 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD66788.1 - 1.8e-08 34.5 1.2 0.055 13.7 0.0 4.7 4 1 1 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 AJD66788.1 - 1.1e-07 31.8 64.2 0.00085 19.4 8.3 8.4 4 3 4 8 8 8 4 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 AJD66788.1 - 0.00021 20.9 18.7 0.0092 15.6 0.5 5.2 2 1 3 5 5 5 3 Bacterial type III secretion protein (HrpB1_HrpK) TPR_MalT PF17874.1 AJD66788.1 - 0.00033 20.1 30.0 0.0029 17.0 2.5 5.2 1 1 3 5 5 4 2 MalT-like TPR region NARP1 PF12569.8 AJD66788.1 - 0.0054 15.7 0.3 2.6 6.8 0.2 3.1 2 1 1 3 3 3 1 NMDA receptor-regulated protein 1 TPR_7 PF13176.6 AJD66788.1 - 0.014 15.4 14.3 72 3.8 0.1 8.2 9 0 0 9 9 9 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD66788.1 - 0.033 14.8 0.5 0.033 14.8 0.5 10.2 11 0 0 11 11 7 0 Tetratricopeptide repeat TPR_6 PF13174.6 AJD66788.1 - 0.1 13.3 24.5 17 6.3 0.2 9.7 11 0 0 11 11 10 0 Tetratricopeptide repeat B12-binding_2 PF02607.17 AJD66788.1 - 1.2 9.7 4.6 12 6.5 0.0 3.7 4 0 0 4 4 4 0 B12 binding domain BTAD PF03704.17 AJD66788.1 - 1.4 9.4 36.7 0.49 10.8 2.0 6.3 3 2 2 5 5 5 0 Bacterial transcriptional activator domain TPR_15 PF13429.6 AJD66788.1 - 4.8 6.3 32.4 7.3 5.7 0.6 5.4 2 1 3 6 6 6 0 Tetratricopeptide repeat PBP PF01161.20 AJD66789.1 - 1.5e-36 125.7 0.0 1.8e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ADH_zinc_N PF00107.26 AJD66790.1 - 8.1e-27 93.8 0.6 1.5e-26 92.9 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AJD66790.1 - 3.5e-16 60.5 0.9 7e-16 59.5 0.2 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD66790.1 - 6.9e-07 29.1 0.0 1.5e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 AJD66790.1 - 0.001 18.4 1.7 0.0023 17.3 1.7 1.6 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain SIS_2 PF13580.6 AJD66790.1 - 0.012 15.6 0.4 0.022 14.8 0.4 1.5 1 0 0 1 1 1 0 SIS domain Sacchrp_dh_NADP PF03435.18 AJD66790.1 - 0.03 14.6 0.3 0.052 13.8 0.3 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ACP_syn_III_C PF08541.10 AJD66790.1 - 0.079 13.1 0.2 0.21 11.8 0.2 1.8 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal META PF03724.16 AJD66791.1 - 1e-14 54.4 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 META domain DUF4377 PF14302.6 AJD66791.1 - 6.1e-13 48.6 0.0 9.1e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4377) BacA PF02673.18 AJD66792.1 - 6.9e-67 225.8 14.8 8.1e-67 225.6 14.8 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF2754 PF10953.8 AJD66792.1 - 0.23 11.7 6.9 4 7.8 0.6 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2754) Gln-synt_C PF00120.24 AJD66793.1 - 5.4e-131 436.7 0.0 6.4e-131 436.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 AJD66793.1 - 2.6e-29 100.8 0.1 5e-29 99.9 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain P-II PF00543.22 AJD66794.1 - 7.8e-43 145.2 2.5 8.7e-43 145.1 2.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF3240 PF11582.8 AJD66794.1 - 0.0096 16.0 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3240) DUF2344 PF10105.9 AJD66794.1 - 0.024 14.5 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) SPOUT_MTase_2 PF14419.6 AJD66794.1 - 0.028 13.8 0.1 0.04 13.3 0.0 1.4 1 1 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Ammonium_transp PF00909.21 AJD66795.1 - 3.6e-118 394.7 42.9 4.6e-118 394.4 42.9 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF2070 PF09843.9 AJD66795.1 - 4.5 5.4 14.7 0.14 10.4 8.8 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) HATPase_c PF02518.26 AJD66796.1 - 4.3e-17 62.6 0.0 7.6e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD66796.1 - 1.9e-12 47.0 0.9 1.9e-12 47.0 0.9 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 AJD66796.1 - 7.8e-05 22.6 0.0 0.00023 21.1 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 AJD66796.1 - 8.6e-05 22.8 0.2 0.00028 21.1 0.1 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 AJD66796.1 - 0.00013 21.8 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 AJD66796.1 - 0.0017 18.3 0.0 0.0057 16.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 AJD66796.1 - 0.075 13.3 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 PAS domain HATPase_c_2 PF13581.6 AJD66796.1 - 0.082 12.9 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Sigma54_activat PF00158.26 AJD66797.1 - 1.9e-68 229.4 0.0 2.6e-68 229.0 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AJD66797.1 - 3.2e-26 92.1 0.0 2.3e-25 89.3 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 AJD66797.1 - 5.5e-26 90.9 0.0 1.2e-25 89.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_8 PF02954.19 AJD66797.1 - 1.4e-09 37.5 4.4 4.5e-09 36.0 4.4 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AJD66797.1 - 7.5e-06 26.0 0.0 1.4e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 AJD66797.1 - 0.00089 19.7 0.0 0.0035 17.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 AJD66797.1 - 0.012 15.4 0.4 0.037 13.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain HTH_30 PF13556.6 AJD66797.1 - 0.041 13.7 0.7 0.16 11.8 0.5 2.2 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain AAA_16 PF13191.6 AJD66797.1 - 0.046 14.1 0.2 0.046 14.1 0.2 2.3 2 1 0 2 2 2 0 AAA ATPase domain Sod_Cu PF00080.20 AJD66798.1 - 5.4e-36 123.9 1.0 6.7e-36 123.6 1.0 1.1 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) Sod_Cu PF00080.20 AJD66799.1 - 3.5e-44 150.4 7.0 4.7e-44 150.0 7.0 1.2 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) CHRD PF07452.12 AJD66799.1 - 0.22 12.5 6.1 0.29 12.1 5.7 1.7 1 1 0 1 1 1 0 CHRD domain Big_3_5 PF16640.5 AJD66799.1 - 0.29 11.3 7.0 0.058 13.6 2.3 2.2 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) Glyoxalase PF00903.25 AJD66800.1 - 2.6e-10 40.6 0.0 3.3e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD66800.1 - 4.1e-05 24.3 0.1 5e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 AJD66800.1 - 0.0034 17.6 0.0 0.0056 16.9 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 AJD66800.1 - 0.042 13.8 0.0 0.27 11.2 0.0 1.9 1 1 0 1 1 1 0 Glyoxalase-like domain Thiolase_N PF00108.23 AJD66802.1 - 1.6e-53 181.7 0.0 2.4e-53 181.1 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AJD66802.1 - 5.3e-32 110.1 0.1 1e-31 109.2 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AJD66802.1 - 0.046 13.3 0.1 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain HemY_N PF07219.13 AJD66803.1 - 1.3e-16 60.7 1.5 1.3e-16 60.7 1.5 3.4 4 0 0 4 4 4 1 HemY protein N-terminus TPR_19 PF14559.6 AJD66803.1 - 0.00041 20.8 0.2 0.00041 20.8 0.2 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 AJD66803.1 - 0.0094 16.0 9.0 0.51 10.6 0.1 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 AJD66803.1 - 0.037 14.0 4.2 0.061 13.4 0.4 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF3262 PF11660.8 AJD66803.1 - 0.16 12.3 0.2 0.16 12.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) Gemini_mov PF01708.16 AJD66803.1 - 0.23 11.2 1.0 0.67 9.8 1.0 1.7 1 0 0 1 1 1 0 Geminivirus putative movement protein HemX PF04375.14 AJD66804.1 - 4.7e-22 78.7 22.8 1.5e-20 73.8 22.8 2.0 1 1 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase TPR_21 PF09976.9 AJD66804.1 - 4.7e-05 23.2 0.7 4.7e-05 23.2 0.7 3.9 2 1 2 4 4 4 1 Tetratricopeptide repeat-like domain DUF4307 PF14155.6 AJD66804.1 - 0.044 13.6 0.7 0.082 12.7 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF5353 PF17304.2 AJD66804.1 - 0.19 11.5 0.7 0.32 10.8 0.7 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5353) LapA_dom PF06305.11 AJD66804.1 - 0.46 10.3 3.5 0.4 10.5 0.3 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2390 PF09523.10 AJD66804.1 - 0.48 10.8 16.0 0.13 12.6 4.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2390) HEM4 PF02602.15 AJD66805.1 - 1.3e-22 80.3 2.5 1.6e-22 80.0 2.5 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Cas3_C PF18395.1 AJD66805.1 - 0.14 12.6 0.9 0.96 10.0 0.1 2.2 2 0 0 2 2 2 0 Cas3 C-terminal domain Glyco_transf_25 PF01755.17 AJD66806.1 - 1.6e-18 67.3 0.0 1.2e-17 64.4 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase family 25 (LPS biosynthesis protein) YiiD_C PF09500.10 AJD66807.1 - 1.7e-33 115.5 0.0 1.9e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Putative thioesterase (yiiD_Cterm) 4HBT PF03061.22 AJD66807.1 - 0.012 15.9 0.0 0.022 15.1 0.0 1.5 1 0 0 1 1 1 0 Thioesterase superfamily Kelch_6 PF13964.6 AJD66808.1 - 0.055 13.8 0.4 0.097 13.0 0.4 1.4 1 0 0 1 1 1 0 Kelch motif DUF4307 PF14155.6 AJD66808.1 - 0.41 10.5 3.0 3.4 7.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) Rhodanese PF00581.20 AJD66809.1 - 5e-18 65.6 0.0 7.2e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain SecB PF02556.14 AJD66810.1 - 6.5e-53 178.4 0.1 7.9e-53 178.2 0.1 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB NAD_Gly3P_dh_N PF01210.23 AJD66811.1 - 3.4e-51 173.3 0.0 6e-51 172.5 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_Gly3P_dh_C PF07479.14 AJD66811.1 - 2.2e-47 160.9 0.4 3e-47 160.5 0.4 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ApbA PF02558.16 AJD66811.1 - 3.8e-08 33.1 0.0 2e-07 30.8 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 AJD66811.1 - 2.1e-06 28.2 0.0 5.6e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 AJD66811.1 - 6.7e-05 23.1 0.0 0.00062 20.0 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 AJD66811.1 - 0.00035 20.5 0.6 0.0008 19.3 0.1 1.9 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 AJD66811.1 - 0.012 15.2 0.0 0.029 14.0 0.0 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 AJD66811.1 - 0.013 15.8 0.0 0.14 12.4 0.0 2.3 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 AJD66811.1 - 0.02 15.2 0.0 0.12 12.7 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain Rossmann-like PF10727.9 AJD66811.1 - 0.028 14.3 0.6 0.19 11.6 0.1 2.4 2 0 0 2 2 2 0 Rossmann-like domain OMP_b-brl PF13505.6 AJD66812.1 - 5.7e-09 36.4 14.1 1.9e-06 28.1 14.1 2.9 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain Porin_4 PF13609.6 AJD66812.1 - 0.00019 21.3 9.8 0.012 15.4 0.7 2.1 1 1 1 2 2 2 2 Gram-negative porin BBP2_2 PF10082.9 AJD66812.1 - 0.021 13.7 0.7 0.058 12.2 0.5 1.8 1 1 0 1 1 1 0 Putative beta-barrel porin 2 OEP PF02321.18 AJD66812.1 - 0.041 13.7 0.5 0.17 11.6 0.1 2.0 2 0 0 2 2 2 0 Outer membrane efflux protein TPP_enzyme_N PF02776.18 AJD66813.1 - 2.5e-44 150.9 5.6 4.1e-43 146.9 0.6 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 AJD66813.1 - 3.6e-39 134.0 2.2 3e-38 131.0 0.2 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 AJD66813.1 - 2e-32 111.8 0.0 4.1e-32 110.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 AJD66813.1 - 0.014 15.2 0.2 0.014 15.2 0.2 1.7 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NTP_transf_3 PF12804.7 AJD66813.1 - 0.13 12.6 7.0 4.7 7.6 4.2 3.8 2 1 0 2 2 2 0 MobA-like NTP transferase domain HATPase_c PF02518.26 AJD66814.1 - 8.7e-12 45.5 0.0 4.6e-11 43.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD66814.1 - 4.6e-10 39.4 0.1 1.8e-09 37.5 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 AJD66814.1 - 0.00013 22.3 0.1 0.00059 20.2 0.1 2.2 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 AJD66814.1 - 0.0028 17.5 0.0 0.0058 16.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 AJD66814.1 - 0.0039 17.1 0.0 0.013 15.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4386 PF14329.6 AJD66814.1 - 0.036 13.9 6.2 2.1 8.2 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4386) MFS_1 PF07690.16 AJD66814.1 - 0.042 12.8 1.4 0.047 12.6 0.3 1.6 2 0 0 2 2 2 0 Major Facilitator Superfamily DUF4381 PF14316.6 AJD66814.1 - 0.1 12.8 15.0 0.7 10.1 5.3 4.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4381) DUF202 PF02656.15 AJD66814.1 - 1.2 9.6 5.7 19 5.8 0.5 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF202) PMP1_2 PF08114.11 AJD66814.1 - 7.3 6.4 7.8 2 8.2 1.8 2.4 2 0 0 2 2 2 0 ATPase proteolipid family Sigma54_activat PF00158.26 AJD66815.1 - 9.8e-69 230.4 0.0 5.8e-68 227.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain Response_reg PF00072.24 AJD66815.1 - 3.1e-23 82.1 0.1 7.8e-23 80.8 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 AJD66815.1 - 7e-23 81.3 0.0 3.6e-22 79.0 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain HTH_8 PF02954.19 AJD66815.1 - 8.7e-15 54.2 3.4 8.7e-15 54.2 3.4 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AJD66815.1 - 2.2e-05 24.5 0.0 4.9e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) HTH_50 PF18024.1 AJD66815.1 - 6.1e-05 22.5 1.1 0.00059 19.4 0.2 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Mg_chelatase PF01078.21 AJD66815.1 - 0.00033 20.1 0.4 0.5 9.7 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 AJD66815.1 - 0.0011 19.4 0.0 0.0037 17.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HTH_28 PF13518.6 AJD66815.1 - 0.0068 16.5 0.2 0.022 14.9 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 AJD66815.1 - 0.011 15.5 1.6 0.033 14.0 0.1 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain AAA_7 PF12775.7 AJD66815.1 - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 AJD66815.1 - 0.2 12.0 5.0 0.94 9.8 1.8 3.3 2 2 0 2 2 2 0 AAA ATPase domain Metal_resist PF13801.6 AJD66816.1 - 0.85 9.8 3.5 9.7 6.4 1.0 2.5 2 0 0 2 2 2 0 Heavy-metal resistance MFS_1 PF07690.16 AJD66818.1 - 1.3e-23 83.5 64.0 2.1e-15 56.5 39.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 AJD66818.1 - 2.8e-17 62.6 9.0 1.3e-14 53.9 9.0 2.2 1 1 0 1 1 1 1 MFS_1 like family Oxidored_q2 PF00420.24 AJD66818.1 - 0.019 14.6 1.7 0.019 14.6 1.7 2.9 3 1 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SpoU_methylase PF00588.19 AJD66819.1 - 2.3e-32 112.1 0.0 2.9e-32 111.8 0.0 1.0 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF3180 PF11377.8 AJD66820.1 - 0.051 13.7 11.5 1.4 9.1 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) DUF4156 PF13698.6 AJD66821.1 - 1.5e-10 41.2 0.0 1.9e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) ACP_syn_III_C PF08541.10 AJD66822.1 - 7.7e-19 67.7 0.0 1.8e-18 66.5 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 AJD66822.1 - 2.8e-08 33.5 0.6 1.4e-07 31.3 0.6 2.1 1 1 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 AJD66822.1 - 0.00023 20.6 0.2 0.00051 19.5 0.2 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain Dehydratase_MU PF02288.15 AJD66822.1 - 0.0072 16.2 0.2 0.059 13.3 0.1 2.4 3 0 0 3 3 3 1 Dehydratase medium subunit FAE1_CUT1_RppA PF08392.12 AJD66822.1 - 0.043 13.1 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein UDPG_MGDP_dh PF00984.19 AJD66822.1 - 0.06 13.6 0.0 17 5.7 0.0 2.8 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Phage_coat PF09063.10 AJD66822.1 - 0.12 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Phage PP7 coat protein Fic_N PF13784.6 AJD66823.1 - 6.2e-27 93.5 0.0 1.2e-26 92.5 0.0 1.5 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 AJD66823.1 - 4.3e-23 82.0 0.0 8.2e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 Fic/DOC family Abhydrolase_1 PF00561.20 AJD66824.1 - 1.7e-24 86.9 0.5 3.6e-23 82.5 0.5 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD66824.1 - 1.1e-14 55.6 11.0 1.4e-14 55.3 11.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD66824.1 - 1e-07 31.5 0.0 1.3e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 CxxCxxCC PF03692.15 AJD66825.1 - 8e-13 48.9 1.6 1e-12 48.6 1.6 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain AMP-binding PF00501.28 AJD66826.1 - 8.9e-64 215.6 0.0 1.2e-63 215.2 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme 3Beta_HSD PF01073.19 AJD66828.1 - 1.2e-47 162.2 0.0 1.5e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 AJD66828.1 - 1.3e-36 126.3 0.1 1.9e-36 125.8 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD66828.1 - 9e-17 61.5 0.2 1.4e-16 61.0 0.2 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 AJD66828.1 - 5.3e-16 58.6 0.1 4.2e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.17 AJD66828.1 - 7.1e-14 51.6 0.0 1e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 AJD66828.1 - 1.6e-13 50.8 0.0 7e-13 48.7 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 AJD66828.1 - 6.8e-11 41.8 0.1 7.7e-10 38.4 0.3 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NmrA PF05368.13 AJD66828.1 - 5.8e-08 32.6 0.0 8.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 AJD66828.1 - 0.0047 16.4 0.8 0.0078 15.7 0.1 1.8 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 AJD66828.1 - 0.19 11.6 1.2 1.9 8.3 1.2 2.6 1 1 0 1 1 1 0 KR domain Glyco_trans_4_4 PF13579.6 AJD66828.1 - 1.1 9.7 12.2 8.7 6.8 11.8 2.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain DUF1328 PF07043.13 AJD66829.1 - 9.8e-16 57.7 23.8 1.1e-15 57.5 23.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF805 PF05656.14 AJD66829.1 - 0.31 11.5 5.2 0.33 11.4 5.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Fungus-induced PF10917.8 AJD66829.1 - 0.4 11.0 7.9 1.9 8.9 1.9 2.1 2 0 0 2 2 2 0 Fungus-induced protein DUF5325 PF17259.2 AJD66829.1 - 0.76 9.7 12.0 1.1 9.2 12.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5325) Phage_holin_3_6 PF07332.11 AJD66829.1 - 0.77 9.8 10.6 0.95 9.5 10.6 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3784 PF12650.7 AJD66829.1 - 0.88 9.8 10.2 1.1 9.6 10.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Tetraspanin PF00335.20 AJD66829.1 - 1.5 8.5 9.3 1.6 8.4 9.3 1.0 1 0 0 1 1 1 0 Tetraspanin family DUF2981 PF11200.8 AJD66829.1 - 1.8 8.2 7.5 3.3 7.4 7.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2981) DUF4870 PF09685.10 AJD66829.1 - 2 8.6 10.0 2 8.6 10.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4870) SdpI PF13630.6 AJD66829.1 - 4.6 7.4 10.1 6.1 7.1 10.1 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family FixQ PF05545.11 AJD66829.1 - 5.1 7.1 11.1 0.15 12.0 1.5 2.1 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ CitMHS PF03600.16 AJD66829.1 - 5.1 6.2 12.1 5.8 6.0 12.1 1.0 1 0 0 1 1 1 0 Citrate transporter Tmemb_55A PF09788.9 AJD66829.1 - 5.4 6.0 4.9 5.9 5.9 4.9 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A ABC2_membrane_2 PF12679.7 AJD66829.1 - 5.6 6.2 9.7 6.8 5.9 9.7 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF5134 PF17197.4 AJD66829.1 - 6.4 6.7 7.6 0.5 10.3 1.8 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5134) Fer4_5 PF12801.7 AJD66829.1 - 7.8 6.5 11.2 3.8 7.5 2.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain FA_desaturase PF00487.24 AJD66829.1 - 8.7 6.1 9.3 10 5.9 9.3 1.0 1 0 0 1 1 1 0 Fatty acid desaturase SecG PF03840.14 AJD66829.1 - 9.8 6.3 15.3 2.9 8.0 5.7 2.1 1 1 1 2 2 2 0 Preprotein translocase SecG subunit Dala_Dala_lig_N PF01820.21 AJD66830.1 - 4.8e-12 46.2 0.0 5.4e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase N-terminus SCP2 PF02036.17 AJD66831.1 - 2.5e-13 50.4 0.0 4.4e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 SCP-2 sterol transfer family BMFP PF04380.13 AJD66831.1 - 0.013 15.9 3.7 0.013 15.9 3.7 2.1 2 0 0 2 2 2 0 Membrane fusogenic activity CbbQ_C PF08406.10 AJD66831.1 - 0.054 13.7 0.6 0.5 10.7 0.0 2.4 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal ABC1 PF03109.16 AJD66832.1 - 4.2e-30 104.4 0.0 1e-29 103.1 0.0 1.7 2 0 0 2 2 2 1 ABC1 family DUF3325 PF11804.8 AJD66832.1 - 1.1 9.5 6.2 2.6 8.2 6.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) DUF2537 PF10801.8 AJD66832.1 - 7.1 6.9 10.5 0.39 11.0 4.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2537) Cupin_2 PF07883.11 AJD66833.1 - 3.4e-13 49.1 0.0 7.3e-13 48.0 0.0 1.6 2 0 0 2 2 2 1 Cupin domain Cupin_3 PF05899.12 AJD66833.1 - 0.025 14.3 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF861) PseudoU_synth_2 PF00849.22 AJD66834.1 - 4.1e-29 101.7 0.0 5.3e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase DUF2059 PF09832.9 AJD66835.1 - 9.2e-17 60.9 0.2 9.2e-17 60.9 0.2 2.6 3 1 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2059) DUF2572 PF10833.8 AJD66835.1 - 0.0067 16.2 0.7 0.0082 15.9 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2572) DUF445 PF04286.12 AJD66835.1 - 0.018 14.9 0.4 0.024 14.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) POTRA_TamA_1 PF17243.2 AJD66835.1 - 0.027 14.6 3.1 0.063 13.4 3.1 1.6 1 0 0 1 1 1 0 POTRA domain TamA domain 1 CFTR_R PF14396.6 AJD66835.1 - 0.042 13.4 0.5 0.062 12.9 0.5 1.3 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain RF-1 PF00472.20 AJD66836.1 - 9.8e-22 77.1 0.0 1.4e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 RF-1 domain TFIIB_C_1 PF18542.1 AJD66836.1 - 0.13 12.3 3.0 0.16 12.0 1.4 1.8 1 1 1 2 2 2 0 Transcription factor IIB C-terminal module 1 PLA2_inh PF02988.15 AJD66836.1 - 0.21 12.3 0.0 0.3 11.8 0.0 1.2 1 0 0 1 1 1 0 Phospholipase A2 inhibitor Acyltransferase PF01553.21 AJD66837.1 - 8.3e-12 44.9 0.0 1e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Acyltransferase LEP503 PF15221.6 AJD66837.1 - 0.16 12.4 0.2 0.35 11.2 0.2 1.5 1 0 0 1 1 1 0 Lens epithelial cell protein LEP503 Asparaginase_2 PF01112.18 AJD66838.1 - 6e-120 399.9 10.2 6.8e-120 399.7 10.2 1.0 1 0 0 1 1 1 1 Asparaginase LEA_5 PF00477.17 AJD66838.1 - 2.4 8.7 7.5 4.8 7.7 0.3 3.2 3 0 0 3 3 3 0 Small hydrophilic plant seed protein Peptidase_M3 PF01432.20 AJD66839.1 - 6.9e-135 450.8 0.6 8.6e-135 450.5 0.6 1.1 1 0 0 1 1 1 1 Peptidase family M3 DUF1932 PF09130.11 AJD66839.1 - 0.037 14.0 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1932) Peptidase_M50B PF13398.6 AJD66839.1 - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase M50B-like DASH_Spc19 PF08287.11 AJD66839.1 - 3.8 7.4 12.8 0.68 9.8 0.5 2.9 3 0 0 3 3 3 0 Spc19 Lactamase_B_2 PF12706.7 AJD66840.1 - 6.3e-44 149.9 0.1 9.1e-44 149.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 AJD66840.1 - 2.8e-13 50.1 0.0 3.5e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TetR_C_7 PF14246.6 AJD66841.1 - 2.3e-31 108.3 1.3 4.8e-31 107.3 0.3 1.8 2 0 0 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 AJD66841.1 - 4e-19 68.1 0.2 9.2e-19 67.0 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 AJD66841.1 - 1.5e-06 28.4 0.6 1.5e-06 28.4 0.6 2.0 2 1 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_11 PF16859.5 AJD66841.1 - 0.0043 17.4 2.0 0.0048 17.2 0.3 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_22 PF13309.6 AJD66841.1 - 0.026 14.6 0.2 0.12 12.4 0.2 2.1 1 1 0 1 1 1 0 HTH domain HTH_32 PF13565.6 AJD66841.1 - 0.069 13.8 0.9 1.3 9.7 0.0 3.0 2 1 0 3 3 3 0 Homeodomain-like domain Glyoxalase PF00903.25 AJD66842.1 - 1.9e-06 28.1 0.1 1.9e-05 24.9 0.1 1.9 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD66842.1 - 7e-05 23.6 0.4 0.00012 22.9 0.4 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain HTH_18 PF12833.7 AJD66843.1 - 2e-14 53.6 0.5 4.3e-14 52.6 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD66843.1 - 7.7e-06 25.9 0.0 0.0016 18.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Na_H_Exchanger PF00999.21 AJD66844.1 - 9.9e-53 179.3 36.8 1.2e-52 179.0 36.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family LysR_substrate PF03466.20 AJD66845.1 - 2.9e-50 170.5 0.9 4.7e-50 169.9 0.9 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66845.1 - 1.8e-20 72.6 0.2 3.1e-20 71.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 AJD66845.1 - 0.00094 18.4 0.0 0.62 9.1 0.0 2.5 2 1 0 2 2 2 2 PBP superfamily domain HTH_30 PF13556.6 AJD66845.1 - 0.0056 16.5 0.1 0.025 14.4 0.0 2.1 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Malate_synthase PF01274.22 AJD66846.1 - 2.6e-194 646.3 0.0 3.1e-194 646.1 0.0 1.0 1 0 0 1 1 1 1 Malate synthase HpcH_HpaI PF03328.14 AJD66846.1 - 2.8e-07 29.9 0.0 1.6e-05 24.2 0.0 2.4 2 1 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family ICL PF00463.21 AJD66847.1 - 2.3e-101 339.9 3.8 1.8e-56 191.8 0.2 2.3 1 1 1 2 2 2 2 Isocitrate lyase family PEP_mutase PF13714.6 AJD66847.1 - 3.3e-19 69.3 0.0 6.2e-19 68.4 0.0 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase GGDEF PF00990.21 AJD66848.1 - 1.2e-38 132.4 0.0 1.8e-38 131.8 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain cNMP_binding PF00027.29 AJD66848.1 - 1.7e-19 69.6 0.1 4.3e-19 68.4 0.1 1.7 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain UPF0240 PF06784.11 AJD66848.1 - 0.024 14.7 0.1 0.034 14.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) TPR_16 PF13432.6 AJD66849.1 - 0.00027 21.5 38.8 0.03 15.0 1.7 7.2 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.17 AJD66849.1 - 0.00028 20.8 14.0 0.64 10.3 0.0 6.8 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_6 PF13174.6 AJD66849.1 - 0.00037 20.9 9.4 0.0098 16.5 0.3 5.9 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_11 PF13414.6 AJD66849.1 - 0.00045 19.8 0.2 1.9 8.3 0.0 3.6 4 0 0 4 4 4 2 TPR repeat TPR_1 PF00515.28 AJD66849.1 - 0.0036 17.0 0.0 0.83 9.6 0.0 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 AJD66849.1 - 0.0064 17.0 20.4 0.029 14.9 0.7 5.5 5 1 0 5 5 5 2 Tetratricopeptide repeat LpoB PF13036.6 AJD66849.1 - 0.055 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Peptidoglycan-synthase activator LpoB TPR_21 PF09976.9 AJD66849.1 - 1.4 8.6 11.0 0.3 10.8 0.1 3.4 3 1 1 4 4 4 0 Tetratricopeptide repeat-like domain Mtd_N PF18454.1 AJD66850.1 - 0.011 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Major tropism determinant N-terminal domain Nitroreductase PF00881.24 AJD66851.1 - 6.3e-18 65.4 0.0 9.7e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family Peptidase_S9 PF00326.21 AJD66853.1 - 9.7e-44 149.4 0.0 1.6e-43 148.7 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 AJD66853.1 - 1.1e-12 48.0 0.4 3.5e-12 46.3 0.4 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 AJD66853.1 - 7.7e-12 45.4 0.3 3.7e-08 33.3 0.2 2.3 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 AJD66853.1 - 1e-10 41.3 0.3 4.3e-07 29.4 0.1 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD66853.1 - 3.6e-07 31.0 2.2 3.6e-07 31.0 2.2 3.1 3 1 0 3 3 3 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD66853.1 - 4e-06 26.7 0.9 0.047 13.3 0.5 2.5 1 1 0 2 2 2 2 alpha/beta hydrolase fold Esterase PF00756.20 AJD66853.1 - 3.4e-05 23.6 0.0 8e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Putative esterase BAAT_C PF08840.11 AJD66853.1 - 8.9e-05 22.5 0.0 0.00049 20.1 0.0 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 AJD66853.1 - 0.0045 16.9 0.7 0.11 12.3 0.0 2.7 2 1 0 2 2 2 1 alpha/beta hydrolase fold DUF2920 PF11144.8 AJD66853.1 - 0.019 14.2 0.0 0.029 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) CPSase_L_D2 PF02786.17 AJD66854.1 - 1.5e-73 246.8 0.0 2.7e-73 246.0 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 AJD66854.1 - 1.9e-46 157.2 1.1 5e-46 155.8 1.1 1.8 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 AJD66854.1 - 6.9e-37 125.8 0.0 2.5e-36 124.0 0.0 2.1 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 AJD66854.1 - 4.4e-15 55.3 0.0 6.9e-14 51.4 0.0 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp PF02222.22 AJD66854.1 - 1.3e-09 37.9 0.0 2.8e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 AJD66854.1 - 1.4e-09 37.8 0.0 3.2e-09 36.6 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus Biotin_lipoyl_2 PF13533.6 AJD66854.1 - 5.1e-07 29.4 0.8 0.0034 17.2 0.0 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 AJD66854.1 - 9.7e-06 26.2 0.2 0.067 13.9 0.1 3.0 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 AJD66854.1 - 0.0017 17.6 0.0 0.57 9.4 0.0 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATP-grasp_3 PF02655.14 AJD66854.1 - 0.0091 16.0 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain DUF2092 PF09865.9 AJD66854.1 - 0.12 11.7 0.0 14 4.9 0.0 2.7 2 1 0 2 2 2 0 Predicted periplasmic protein (DUF2092) ATP-grasp_4 PF13535.6 AJD66854.1 - 0.16 11.5 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Carboxyl_trans PF01039.22 AJD66855.1 - 7.8e-151 503.1 0.0 9.9e-151 502.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 AJD66855.1 - 0.062 12.8 2.7 5 6.5 0.0 2.6 3 0 0 3 3 3 0 Malonate decarboxylase gamma subunit (MdcE) Acyl-CoA_dh_1 PF00441.24 AJD66856.1 - 7.1e-43 146.4 1.3 1.3e-42 145.6 1.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AJD66856.1 - 4.9e-33 114.2 0.1 1e-32 113.1 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AJD66856.1 - 1e-26 92.9 0.0 1.8e-26 92.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AJD66856.1 - 6.1e-15 55.7 0.1 1e-14 54.9 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain TetR_N PF00440.23 AJD66857.1 - 6.1e-17 61.2 0.2 2e-16 59.5 0.2 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 AJD66857.1 - 5.1e-09 36.4 0.8 1.1e-08 35.3 0.2 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 AJD66857.1 - 0.00039 20.5 0.9 0.0011 19.0 0.1 2.2 1 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 AJD66857.1 - 0.025 14.8 0.5 0.025 14.8 0.5 2.9 2 1 1 3 3 3 0 BetI-type transcriptional repressor, C-terminal TetR_C_7 PF14246.6 AJD66857.1 - 0.15 12.1 5.1 3.2 7.8 0.1 2.8 2 1 0 3 3 3 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_17 PF17922.1 AJD66857.1 - 0.19 11.8 0.0 0.44 10.7 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_Crp_2 PF13545.6 AJD66858.1 - 0.0077 16.2 0.2 0.026 14.5 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_3 PF01381.22 AJD66858.1 - 0.024 14.7 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix TPR_14 PF13428.6 AJD66858.1 - 0.036 14.9 0.4 20 6.3 0.1 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat RES PF08808.11 AJD66859.1 - 3.2e-23 82.4 1.6 3.7e-23 82.2 1.6 1.0 1 0 0 1 1 1 1 RES domain DUF3325 PF11804.8 AJD66860.1 - 5.9e-29 100.2 17.8 7.2e-29 99.9 17.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3325) PepSY_TM PF03929.16 AJD66861.1 - 2.1e-62 211.4 11.0 2.1e-62 211.4 11.0 1.7 2 0 0 2 2 2 1 PepSY-associated TM region DUF3649 PF12365.8 AJD66862.1 - 6e-06 25.9 13.4 6e-06 25.9 13.4 4.0 5 1 0 5 5 5 1 Protein of unknown function (DUF3649) DUF4198 PF10670.9 AJD66863.1 - 7.8e-08 32.9 0.1 4.5e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 AJD66863.1 - 0.00029 21.0 0.0 0.00072 19.8 0.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 AJD66863.1 - 0.03 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain CarbopepD_reg_2 PF13715.6 AJD66863.1 - 0.13 12.2 0.0 0.26 11.3 0.0 1.5 1 1 0 1 1 1 0 CarboxypepD_reg-like domain Cytochrome_CBB3 PF13442.6 AJD66864.1 - 4.3e-12 46.2 0.1 9e-12 45.1 0.1 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AJD66864.1 - 3.9e-07 31.1 0.2 1.1e-06 29.7 0.0 1.8 2 0 0 2 2 2 1 Cytochrome c Cytochrom_C550 PF14495.6 AJD66864.1 - 0.0094 15.7 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 Cytochrome c-550 domain Cytochrome_C554 PF13435.6 AJD66864.1 - 0.047 14.6 0.2 0.071 14.0 0.2 1.2 1 0 0 1 1 1 0 Cytochrome c554 and c-prime Exo_endo_phos PF03372.23 AJD66865.1 - 2.1e-08 34.0 0.1 4.9e-08 32.8 0.1 1.7 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family MerC PF03203.14 AJD66866.1 - 9.2e-22 77.7 12.8 1.1e-21 77.5 12.8 1.0 1 0 0 1 1 1 1 MerC mercury resistance protein cobW PF02492.19 AJD66867.1 - 2e-56 190.4 0.0 2.6e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 AJD66867.1 - 7.3e-23 80.3 3.5 1.5e-21 76.1 1.5 3.1 2 2 0 2 2 2 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 AJD66867.1 - 0.00012 22.0 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase MeaB PF03308.16 AJD66867.1 - 0.00074 18.6 0.1 0.25 10.3 0.0 2.7 3 0 0 3 3 3 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 AJD66867.1 - 0.0084 16.5 1.8 0.046 14.1 1.8 2.1 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.14 AJD66867.1 - 0.0094 15.8 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 AJD66867.1 - 0.05 13.9 0.1 0.33 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 AJD66867.1 - 0.051 13.1 0.0 6.1 6.3 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TsaE PF02367.17 AJD66867.1 - 0.06 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 AJD66867.1 - 0.061 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 AJD66867.1 - 0.094 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.23 AJD66867.1 - 0.23 11.6 0.0 0.46 10.6 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 AJD66867.1 - 0.29 11.0 0.0 0.46 10.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF3017 PF11222.8 AJD66868.1 - 1.5 9.1 2.9 2.2 8.6 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3017) EamA PF00892.20 AJD66869.1 - 2.6e-09 37.4 34.6 4.1e-05 23.8 15.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family Multi_Drug_Res PF00893.19 AJD66869.1 - 1.8 9.3 15.9 12 6.7 1.2 3.9 2 2 1 3 3 3 0 Small Multidrug Resistance protein PMT_4TMC PF16192.5 AJD66869.1 - 4.8 6.7 7.2 0.79 9.3 0.5 2.7 1 1 2 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase DUF3087 PF11286.8 AJD66869.1 - 6.4 6.2 6.1 20 4.6 0.1 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3087) Hydrolase_4 PF12146.8 AJD66870.1 - 1.6e-09 37.4 0.4 2e-06 27.3 0.2 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 AJD66870.1 - 1.4e-07 31.4 0.2 5.9e-06 26.1 0.0 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 AJD66870.1 - 3.5e-07 31.1 6.3 2e-06 28.6 6.3 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD66870.1 - 3.5e-07 30.1 0.6 0.0014 18.3 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AJD66870.1 - 0.00016 21.2 0.3 0.14 11.6 0.0 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase family Thioesterase PF00975.20 AJD66870.1 - 0.0043 17.2 0.0 0.0062 16.7 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain FSH1 PF03959.13 AJD66870.1 - 0.047 13.4 0.0 0.7 9.5 0.0 2.1 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 AJD66870.1 - 0.055 13.3 0.1 0.2 11.4 0.0 2.0 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase Cutinase PF01083.22 AJD66870.1 - 0.11 12.5 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Cutinase AFG1_ATPase PF03969.16 AJD66871.1 - 5.3e-127 423.7 0.0 6e-127 423.5 0.0 1.0 1 0 0 1 1 1 1 AFG1-like ATPase MarR PF01047.22 AJD66872.1 - 5e-15 55.2 1.2 5.3e-15 55.1 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AJD66872.1 - 2.3e-11 43.4 0.2 3.9e-11 42.7 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 AJD66872.1 - 4.5e-09 36.7 0.3 8.1e-09 35.9 0.1 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.17 AJD66872.1 - 7.1e-05 22.6 0.1 0.00014 21.7 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 AJD66872.1 - 0.0001 22.3 0.4 0.00029 20.8 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 AJD66872.1 - 0.00067 19.8 0.1 0.0013 18.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 AJD66872.1 - 0.00075 19.8 0.1 0.0017 18.7 0.1 1.6 1 1 0 1 1 1 1 Penicillinase repressor PadR PF03551.14 AJD66872.1 - 0.0016 18.3 0.1 0.0029 17.5 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 AJD66872.1 - 0.0024 17.7 0.5 0.0056 16.5 0.0 1.8 3 0 0 3 3 3 1 TFIIE alpha subunit TrmB PF01978.19 AJD66872.1 - 0.0063 16.4 0.1 0.01 15.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 AJD66872.1 - 0.033 13.7 0.0 0.075 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 AJD66872.1 - 0.056 13.3 0.9 0.1 12.4 0.3 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF4226 PF10774.9 AJD66872.1 - 0.064 13.5 1.9 2.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) HTH_5 PF01022.20 AJD66872.1 - 0.073 13.0 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family OsmC PF02566.19 AJD66873.1 - 1.7e-19 70.1 0.0 3.3e-19 69.2 0.0 1.4 2 0 0 2 2 2 1 OsmC-like protein Abhydrolase_1 PF00561.20 AJD66874.1 - 4.7e-12 46.1 0.0 0.00016 21.4 0.0 3.0 2 1 1 3 3 3 3 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD66874.1 - 5.4e-12 46.8 8.6 7.2e-12 46.4 8.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 AJD66874.1 - 8.8e-07 29.0 0.0 1.4e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Hydrolase_4 PF12146.8 AJD66874.1 - 2.4e-05 23.7 0.0 6.8e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 AJD66874.1 - 0.0021 18.2 0.1 0.0027 17.9 0.1 1.3 1 0 0 1 1 1 1 Thioesterase domain DUF2920 PF11144.8 AJD66874.1 - 0.0085 15.3 0.0 0.0096 15.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2920) DUF3141 PF11339.8 AJD66874.1 - 0.011 14.1 0.0 0.016 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) LIDHydrolase PF10230.9 AJD66874.1 - 0.19 11.3 0.0 0.81 9.2 0.0 1.8 2 0 0 2 2 2 0 Lipid-droplet associated hydrolase DUF2884 PF11101.8 AJD66875.1 - 1.8e-33 116.0 0.6 3.1e-33 115.2 0.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2884) ADH_N_2 PF16884.5 AJD66878.1 - 1.9e-35 121.0 0.0 4.7e-35 119.8 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 AJD66878.1 - 6.7e-17 61.7 0.0 1.1e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AJD66878.1 - 6.6e-07 30.5 0.1 1.6e-06 29.2 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Aldo_ket_red PF00248.21 AJD66879.1 - 9.5e-69 231.8 0.0 1.1e-68 231.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_12 PF08242.12 AJD66880.1 - 0.0008 20.1 0.0 0.0012 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD66880.1 - 0.0046 17.6 0.0 0.012 16.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD66880.1 - 0.013 16.2 0.0 0.04 14.6 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 AJD66880.1 - 0.11 11.5 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PseudoU_synth_2 PF00849.22 AJD66881.1 - 6.4e-19 68.6 0.0 1.2e-18 67.7 0.0 1.4 1 1 0 1 1 1 1 RNA pseudouridylate synthase Plug PF07715.15 AJD66882.1 - 5e-11 43.1 2.3 2.1e-10 41.1 2.3 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain CarboxypepD_reg PF13620.6 AJD66882.1 - 3.3e-08 33.7 7.4 1.3e-07 31.8 3.8 3.3 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain TonB_dep_Rec PF00593.24 AJD66882.1 - 6.1e-06 26.4 67.8 6.1e-06 26.4 67.8 4.2 1 1 1 2 2 2 1 TonB dependent receptor SpaA PF17802.1 AJD66882.1 - 0.076 13.4 0.1 0.32 11.4 0.1 2.1 1 0 0 1 1 1 0 Prealbumin-like fold domain DUF3367 PF11847.8 AJD66883.1 - 0.023 12.6 0.3 0.028 12.3 0.3 1.1 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase DUF3318 PF11780.8 AJD66883.1 - 0.032 14.2 0.6 0.053 13.5 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) DUF202 PF02656.15 AJD66883.1 - 0.047 14.1 0.1 0.08 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF1206 PF06724.11 AJD66883.1 - 0.34 11.0 5.3 0.24 11.5 2.5 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) DUF883 PF05957.13 AJD66883.1 - 2.6 8.7 10.2 0.98 10.1 5.8 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) HrpB_C PF08482.10 AJD66884.1 - 8e-52 175.2 0.1 1.5e-51 174.3 0.1 1.5 1 0 0 1 1 1 1 ATP-dependent helicase C-terminal Helicase_C PF00271.31 AJD66884.1 - 1.2e-15 57.8 0.0 2e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HA2 PF04408.23 AJD66884.1 - 2.1e-10 40.8 0.2 6.1e-10 39.4 0.1 1.8 2 0 0 2 2 2 1 Helicase associated domain (HA2) DEAD PF00270.29 AJD66884.1 - 5.6e-05 23.0 0.0 0.0001 22.1 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 AJD66884.1 - 0.17 11.8 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain DUF1456 PF07308.13 AJD66885.1 - 7.7e-52 173.5 0.0 1.2e-24 86.5 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF1456) Transthyretin PF00576.21 AJD66886.1 - 2.3e-32 111.9 0.0 2.7e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family CarboxypepD_reg PF13620.6 AJD66886.1 - 8.6e-05 22.7 0.0 0.00024 21.3 0.0 1.7 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Pyr_redox_3 PF13738.6 AJD66887.1 - 7.5e-17 61.5 0.0 1e-15 57.8 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AJD66887.1 - 1.7e-14 54.1 0.6 7.1e-14 52.1 0.2 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.6 AJD66887.1 - 3.6e-13 49.4 0.0 1.4e-12 47.5 0.0 1.8 1 1 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 AJD66887.1 - 8.4e-09 35.1 0.0 3e-08 33.2 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD66887.1 - 1.4e-08 34.7 0.7 1.3e-07 31.5 0.7 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AJD66887.1 - 6.1e-05 21.9 0.0 0.0068 15.2 0.1 2.7 3 1 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 AJD66887.1 - 0.00013 22.1 0.2 0.0007 19.8 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 AJD66887.1 - 0.00018 20.8 0.0 0.00033 20.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 AJD66887.1 - 0.00056 19.1 0.1 0.0019 17.4 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 AJD66887.1 - 0.029 13.4 0.0 0.077 12.1 0.1 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A TrkA_N PF02254.18 AJD66887.1 - 0.041 14.1 0.1 0.078 13.2 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox PF00070.27 AJD66887.1 - 0.056 14.0 0.5 7.7 7.2 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AJD66887.1 - 0.065 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain OHCU_decarbox PF09349.10 AJD66888.1 - 2e-39 135.6 0.2 2.3e-39 135.4 0.2 1.0 1 0 0 1 1 1 1 OHCU decarboxylase PHAT PF09246.10 AJD66888.1 - 0.08 12.8 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 PHAT DUF3225 PF11533.8 AJD66889.1 - 7.6e-54 180.8 0.2 8.5e-54 180.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 AJD66889.1 - 2.8e-06 27.6 0.3 4.2e-06 27.0 0.3 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 AJD66889.1 - 3e-05 24.4 0.6 4e-05 24.0 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 AJD66889.1 - 0.04 14.6 3.1 0.058 14.1 3.1 1.2 1 0 0 1 1 1 0 SnoaL-like domain CaMKII_AD PF08332.10 AJD66889.1 - 0.062 13.4 0.4 0.14 12.3 0.4 1.7 1 1 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II association domain Polysacc_deac_1 PF01522.21 AJD66890.1 - 3.3e-10 39.9 0.1 5.2e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Aminotran_5 PF00266.19 AJD66891.1 - 3.6e-24 85.4 0.0 1.5e-23 83.3 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Gmx_para_CXXCG PF09535.10 AJD66891.1 - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (Gmx_para_CXXCG) Peptidase_M20 PF01546.28 AJD66892.1 - 1e-29 103.7 1.1 1.5e-29 103.2 1.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 AJD66892.1 - 2.3e-05 24.2 0.1 4.9e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 AJD66892.1 - 0.00011 22.1 0.1 0.00029 20.7 0.1 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain LysR_substrate PF03466.20 AJD66893.1 - 2.5e-38 131.6 0.1 4.1e-38 130.9 0.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66893.1 - 3.9e-21 74.8 2.3 7.1e-21 73.9 2.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AJD66893.1 - 0.064 13.2 0.1 0.22 11.5 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 AJD66893.1 - 0.095 12.8 0.2 0.22 11.6 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 AJD66893.1 - 0.37 10.6 1.4 0.43 10.4 0.0 1.8 2 0 0 2 2 2 0 helix-turn-helix, Psq domain MFS_1 PF07690.16 AJD66894.1 - 1.5e-31 109.7 64.3 1.5e-31 109.7 64.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily G_glu_transpept PF01019.21 AJD66896.1 - 1.2e-125 420.2 0.1 1.4e-125 420.0 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Amidase PF01425.21 AJD66897.1 - 1.8e-83 281.0 7.0 3.7e-82 276.7 7.0 2.1 1 1 0 1 1 1 1 Amidase DUF5403 PF17395.2 AJD66897.1 - 0.16 12.2 2.0 5.1 7.4 0.2 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5403) IU_nuc_hydro PF01156.19 AJD66898.1 - 4.3e-50 171.0 0.0 5.3e-50 170.7 0.0 1.1 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase A_deaminase PF00962.22 AJD66899.1 - 1.5e-22 80.4 0.0 1.6e-21 77.0 0.0 2.1 2 0 0 2 2 2 1 Adenosine/AMP deaminase Xan_ur_permease PF00860.20 AJD66900.1 - 3.1e-47 161.1 36.5 3.7e-47 160.9 36.5 1.0 1 0 0 1 1 1 1 Permease family Fer2 PF00111.27 AJD66901.1 - 2.3e-09 37.0 2.8 4.5e-09 36.1 2.8 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.24 AJD66901.1 - 6.5e-05 23.2 0.0 0.00012 22.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.21 AJD66901.1 - 0.00021 21.9 0.0 0.0009 19.9 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_4 PF13510.6 AJD66901.1 - 0.00059 19.8 0.1 0.0014 18.6 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_6 PF08030.12 AJD66901.1 - 0.1 12.7 0.0 0.58 10.3 0.0 2.1 3 0 0 3 3 3 0 Ferric reductase NAD binding domain Rieske PF00355.26 AJD66902.1 - 5.6e-17 61.5 0.0 1e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain PaO PF08417.12 AJD66902.1 - 0.067 13.3 0.1 0.15 12.2 0.1 1.6 1 0 0 1 1 1 0 Pheophorbide a oxygenase LysR_substrate PF03466.20 AJD66903.1 - 2.2e-34 118.6 6.4 2.9e-34 118.3 6.4 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66903.1 - 2.3e-17 62.7 0.4 7.1e-17 61.1 0.4 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 AJD66903.1 - 0.021 15.0 0.4 0.062 13.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD66903.1 - 0.074 12.9 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TatD_DNase PF01026.21 AJD66904.1 - 7.8e-70 235.2 0.0 9e-70 235.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Glyoxalase PF00903.25 AJD66905.1 - 0.0075 16.5 0.0 0.02 15.1 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD66905.1 - 0.0084 16.9 0.1 0.015 16.1 0.1 1.5 1 0 0 1 1 1 1 Glyoxalase-like domain LysR_substrate PF03466.20 AJD66907.1 - 2.3e-42 144.7 6.8 4.2e-42 143.9 6.8 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66907.1 - 4.4e-24 84.2 2.3 6e-24 83.8 0.9 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Mobilization_B PF17511.2 AJD66907.1 - 0.024 15.0 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 Mobilization protein B NMT1_2 PF13379.6 AJD66907.1 - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family MFS_1 PF07690.16 AJD66908.1 - 9.6e-36 123.4 59.3 6.1e-22 78.0 24.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD66908.1 - 2.2e-14 53.2 33.5 3.9e-12 45.8 7.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 AJD66908.1 - 0.075 11.9 26.7 0.05 12.5 0.9 3.8 2 2 2 4 4 4 0 MFS_1 like family MerR_1 PF13411.6 AJD66909.1 - 1.3e-12 47.6 0.0 2.7e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 AJD66909.1 - 3.6e-12 45.8 0.1 5.8e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 AJD66909.1 - 3.2e-05 24.4 6.4 3.2e-05 24.4 6.4 2.5 2 1 1 3 3 3 1 MerR, DNA binding RHS_repeat PF05593.14 AJD66909.1 - 0.071 13.6 0.1 0.15 12.6 0.1 1.5 1 0 0 1 1 1 0 RHS Repeat Abhydrolase_6 PF12697.7 AJD66910.1 - 4.7e-21 76.4 9.8 6.9e-21 75.9 9.8 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD66910.1 - 2e-20 73.5 0.1 7.2e-16 58.6 0.2 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD66910.1 - 1.3e-16 60.6 0.2 4.8e-09 35.8 0.2 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 AJD66910.1 - 0.0012 18.6 0.0 0.13 12.0 0.0 2.3 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 AJD66910.1 - 0.0026 17.8 0.0 0.02 15.0 0.0 2.1 2 0 0 2 2 2 1 TAP-like protein DLH PF01738.18 AJD66910.1 - 0.0037 16.8 0.0 0.026 14.1 0.0 2.1 3 0 0 3 3 3 1 Dienelactone hydrolase family Ser_hydrolase PF06821.13 AJD66910.1 - 0.024 14.5 0.1 0.088 12.7 0.0 1.9 1 1 0 2 2 2 0 Serine hydrolase SIR2 PF02146.17 AJD66911.1 - 1.9e-45 154.9 0.0 2.5e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 Sir2 family Oxidored_FMN PF00724.20 AJD66912.1 - 2.7e-61 207.8 0.0 3.4e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 AJD66912.1 - 3.6e-08 32.9 0.0 6.3e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 AJD66912.1 - 0.04 13.3 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator NAD_binding_2 PF03446.15 AJD66913.1 - 1.4e-35 122.8 0.0 1.9e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AJD66913.1 - 1.4e-15 57.6 0.7 1.4e-15 57.6 0.7 1.6 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 AJD66913.1 - 0.00074 20.1 0.0 0.0034 17.9 0.0 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 AJD66913.1 - 0.0036 16.7 0.0 0.0068 15.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 AJD66913.1 - 0.0061 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh PF00984.19 AJD66913.1 - 0.0072 16.5 0.0 0.016 15.4 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Shikimate_DH PF01488.20 AJD66913.1 - 0.03 14.4 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SLATT_1 PF18181.1 AJD66913.1 - 0.077 12.9 0.4 0.17 11.9 0.4 1.5 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 3HCDH_N PF02737.18 AJD66913.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Formyl_trans_N PF00551.19 AJD66915.1 - 4.4e-39 134.1 0.1 5.7e-39 133.7 0.1 1.1 1 0 0 1 1 1 1 Formyl transferase ACT PF01842.25 AJD66915.1 - 1e-08 34.8 0.0 3.3e-07 29.9 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 AJD66915.1 - 2.4e-05 24.2 0.1 0.00017 21.5 0.0 2.4 3 0 0 3 3 3 1 ACT domain Response_reg PF00072.24 AJD66916.1 - 2.3e-26 92.1 0.0 3.2e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD66916.1 - 3.3e-21 75.1 0.1 5.3e-21 74.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 AJD66917.1 - 1.4e-20 73.9 0.0 2.4e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD66917.1 - 3e-14 52.8 0.7 2.5e-13 49.9 0.1 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 AJD66917.1 - 1.8e-12 47.4 5.1 2.7e-12 46.9 2.9 2.3 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.6 AJD66917.1 - 0.0047 16.9 0.0 0.009 16.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Apolipoprotein PF01442.18 AJD66917.1 - 0.017 15.0 2.0 0.048 13.5 1.5 1.8 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain DUF2518 PF10726.9 AJD66917.1 - 0.029 14.0 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of function (DUF2518) HATPase_c_5 PF14501.6 AJD66917.1 - 0.029 14.3 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 GHKL domain betaPIX_CC PF16523.5 AJD66917.1 - 0.056 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 betaPIX coiled coil FtsX PF02687.21 AJD66917.1 - 0.085 13.3 0.2 6.7 7.3 0.4 2.3 2 0 0 2 2 2 0 FtsX-like permease family HlyD_D23 PF16576.5 AJD66918.1 - 1.4e-16 60.4 4.7 4.6e-15 55.4 2.0 2.5 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AJD66918.1 - 2.7e-13 49.5 4.6 1e-09 38.1 0.2 3.3 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 AJD66918.1 - 8.9e-13 48.9 9.7 1.4e-09 38.6 0.4 4.6 3 2 1 4 4 4 2 HlyD family secretion protein HlyD PF00529.20 AJD66918.1 - 1.7e-05 24.6 19.9 0.00014 21.7 19.9 2.8 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD66918.1 - 0.013 15.3 0.1 1.6 8.6 0.0 3.0 2 0 0 2 2 2 0 Biotin-requiring enzyme VWA_3_C PF18571.1 AJD66918.1 - 0.019 14.8 0.1 0.055 13.4 0.1 1.7 1 0 0 1 1 1 0 von Willebrand factor type A C-terminal domain DUF2577 PF10844.8 AJD66918.1 - 0.082 13.1 0.0 0.29 11.4 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2577) ACR_tran PF00873.19 AJD66919.1 - 0 1244.4 14.0 0 1244.3 14.0 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD66919.1 - 3e-11 42.9 14.7 3e-11 42.9 14.7 2.5 2 0 0 2 2 2 1 MMPL family SecD_SecF PF02355.16 AJD66919.1 - 9.5e-06 25.1 24.3 0.0017 17.8 13.6 2.9 3 0 0 3 3 3 2 Protein export membrane protein Patched PF02460.18 AJD66919.1 - 0.024 12.7 12.2 0.039 12.0 12.2 1.3 1 0 0 1 1 1 0 Patched family DUF4179 PF13786.6 AJD66919.1 - 0.18 12.3 3.0 3.8 8.0 0.0 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4179) OEP PF02321.18 AJD66920.1 - 1.9e-59 200.6 31.5 5.3e-30 104.6 4.1 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein MCR_alpha PF02249.17 AJD66920.1 - 0.054 14.0 0.0 0.26 11.7 0.0 2.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MTHFR PF02219.17 AJD66922.1 - 5.3e-08 32.5 0.0 7.9e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase QueH PF02677.14 AJD66923.1 - 1.1e-64 217.7 0.1 1.3e-64 217.5 0.1 1.0 1 0 0 1 1 1 1 Epoxyqueuosine reductase QueH LysR_substrate PF03466.20 AJD66924.1 - 4.9e-34 117.5 1.3 7e-34 117.0 1.3 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD66924.1 - 4.3e-16 58.6 2.6 4.7e-16 58.5 1.3 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2917 PF11142.8 AJD66924.1 - 0.00055 19.3 0.2 0.00095 18.5 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2917) HTH_28 PF13518.6 AJD66924.1 - 0.031 14.4 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 AJD66924.1 - 0.18 11.7 0.1 0.32 10.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FMN_red PF03358.15 AJD66925.1 - 1.2e-26 93.3 0.0 1.6e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 AJD66925.1 - 7.9e-07 29.0 0.0 1.4e-06 28.1 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold DUF1852 PF08908.11 AJD66926.1 - 5.4e-181 600.7 0.3 6.2e-181 600.5 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1852) Meth_synt_2 PF01717.18 AJD66927.1 - 5.5e-37 127.8 0.0 8.6e-37 127.1 0.0 1.2 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain CNP1 PF08750.11 AJD66927.1 - 0.00016 21.7 0.0 0.00029 20.8 0.0 1.4 1 0 0 1 1 1 1 CNP1-like family Meth_synt_1 PF08267.12 AJD66927.1 - 0.00082 19.0 0.0 0.013 15.0 0.0 2.2 2 1 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 AJD66927.1 - 0.023 13.8 0.0 0.041 13.0 0.0 1.3 1 1 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) KdgT PF03812.13 AJD66928.1 - 1.3e-111 372.8 24.9 1.4e-111 372.7 24.9 1.0 1 0 0 1 1 1 1 2-keto-3-deoxygluconate permease Porin_O_P PF07396.11 AJD66929.1 - 1.4e-84 284.3 2.6 1.7e-84 284.1 2.6 1.1 1 0 0 1 1 1 1 Phosphate-selective porin O and P Imm75 PF15660.6 AJD66929.1 - 0.13 12.6 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative Immunity protein 75 NmrA PF05368.13 AJD66930.1 - 9.3e-19 67.9 0.7 1.2e-18 67.6 0.7 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 AJD66930.1 - 4.5e-17 62.5 7.2 7.2e-17 61.9 7.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 AJD66930.1 - 2e-05 23.8 0.0 4e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 AJD66930.1 - 5.1e-05 22.9 0.1 0.00028 20.4 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 AJD66930.1 - 0.0063 16.4 0.2 0.0063 16.4 0.2 2.3 2 1 0 2 2 2 1 KR domain NAD_binding_4 PF07993.12 AJD66930.1 - 0.016 14.4 0.0 0.055 12.6 0.0 1.8 2 0 0 2 2 2 0 Male sterility protein HxlR PF01638.17 AJD66931.1 - 1.1e-26 92.5 0.0 1.3e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 AJD66931.1 - 0.047 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 AJD66931.1 - 0.12 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Gly-zipper_YMGG PF13441.6 AJD66932.1 - 0.011 15.5 2.4 0.017 14.8 2.4 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper PAP2 PF01569.21 AJD66932.1 - 0.025 14.4 0.2 0.029 14.1 0.2 1.1 1 0 0 1 1 1 0 PAP2 superfamily DUF4335 PF14233.6 AJD66932.1 - 0.027 14.4 0.0 0.027 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4335) DUF2368 PF10166.9 AJD66932.1 - 0.037 13.7 0.1 0.04 13.5 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) TraT PF05818.12 AJD66932.1 - 0.18 11.5 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein AHSA1 PF08327.11 AJD66934.1 - 0.00031 21.0 0.0 0.00035 20.8 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein rve PF00665.26 AJD66935.1 - 2.7e-32 111.5 0.3 5e-32 110.6 0.1 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD66935.1 - 1.1e-14 54.3 1.9 3.3e-14 52.7 1.9 1.8 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD66935.1 - 2.4e-12 46.8 0.1 4.4e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD66935.1 - 2.2e-10 40.1 0.0 1.2e-09 37.8 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD66935.1 - 2.5e-05 24.5 0.0 3.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AJD66935.1 - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease HTH_Tnp_1 PF01527.20 AJD66936.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD66936.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD66936.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD66936.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD66936.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD66936.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD66936.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD66936.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD66936.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD66936.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD66936.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD66936.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD66936.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD66936.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD66936.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD66936.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD66936.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD66936.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD66936.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD66936.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD66936.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein Phage_integrase PF00589.22 AJD66937.1 - 1.7e-05 24.7 0.0 2.2e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family ILVD_EDD PF00920.21 AJD66938.1 - 3.8e-217 722.0 2.4 4.3e-217 721.8 2.4 1.0 1 0 0 1 1 1 1 Dehydratase family Cellulase PF00150.18 AJD66939.1 - 1.2e-23 84.0 0.0 1.8e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_2_C PF02836.17 AJD66939.1 - 0.0037 16.4 0.1 0.044 12.9 0.0 2.0 1 1 1 2 2 2 1 Glycosyl hydrolases family 2, TIM barrel domain TAT_signal PF10518.9 AJD66939.1 - 6.1 6.9 12.1 0.25 11.3 5.9 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Hexapep PF00132.24 AJD66941.1 - 6.8e-15 54.1 13.7 3.5e-06 26.5 0.1 4.3 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD66941.1 - 0.00032 20.4 13.3 0.4 10.5 0.1 4.5 4 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase DUF3670 PF12419.8 AJD66941.1 - 0.22 11.3 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 SNF2 Helicase protein MFS_1 PF07690.16 AJD66942.1 - 2e-30 105.9 66.4 2.4e-28 99.1 50.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD66942.1 - 1.6e-17 63.6 33.7 4.4e-17 62.1 33.7 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter DUF3391 PF11871.8 AJD66943.1 - 9.6e-29 100.7 0.0 1.5e-28 100.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3391) HD_5 PF13487.6 AJD66943.1 - 4.6e-16 58.8 0.1 9.3e-16 57.8 0.1 1.5 1 0 0 1 1 1 1 HD domain HD PF01966.22 AJD66943.1 - 9.9e-14 51.6 0.0 2.2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 AJD66943.1 - 7.1e-05 22.4 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 HDOD domain DEC-1_N PF04625.13 AJD66943.1 - 0.029 13.4 1.0 0.057 12.4 1.0 1.4 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region HTH_AsnC-type PF13404.6 AJD66943.1 - 0.064 13.1 0.0 5 7.0 0.0 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 AJD66944.1 - 1.2e-09 37.9 3.3 2e-09 37.2 0.1 2.6 3 0 0 3 3 3 1 MarR family MarR PF01047.22 AJD66944.1 - 1.5e-07 31.3 0.4 6.5e-07 29.2 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 AJD66944.1 - 7.6e-06 25.4 0.1 0.00089 18.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 AJD66944.1 - 3.3e-05 24.3 0.0 0.00015 22.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Phenol_MetA_deg PF13557.6 AJD66945.1 - 2.3e-51 175.1 7.5 3.2e-51 174.6 7.5 1.2 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation adh_short_C2 PF13561.6 AJD66946.1 - 3.6e-25 88.9 0.1 8.9e-15 54.9 0.0 2.5 2 1 0 2 2 2 2 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD66946.1 - 2.4e-17 63.0 0.1 8.3e-13 48.2 0.3 2.4 2 1 0 2 2 2 2 short chain dehydrogenase Epimerase PF01370.21 AJD66946.1 - 1.1e-05 25.1 0.7 1.8e-05 24.3 0.2 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AJD66946.1 - 0.00077 18.6 0.1 0.04 13.0 0.1 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 AJD66946.1 - 0.0014 18.1 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldedh PF00171.22 AJD66947.1 - 1.5e-149 498.4 0.2 1.8e-149 498.2 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 AJD66947.1 - 0.0031 16.6 0.0 0.0053 15.9 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) preATP-grasp_3 PF18301.1 AJD66947.1 - 0.038 14.3 0.2 0.088 13.1 0.2 1.6 1 0 0 1 1 1 0 pre ATP-grasp 3 domain OmdA PF13376.6 AJD66947.1 - 0.22 11.6 2.6 0.43 10.6 2.6 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated HTH_18 PF12833.7 AJD66948.1 - 2.4e-20 72.5 1.9 2.4e-20 72.5 1.9 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain AraC_binding PF02311.19 AJD66948.1 - 1.1e-12 48.0 0.4 2.2e-12 47.1 0.4 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_AraC PF00165.23 AJD66948.1 - 1.9e-09 37.4 0.4 1.1e-05 25.4 0.4 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 AJD66948.1 - 1.5e-05 24.6 0.0 2.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.7 AJD66948.1 - 0.0026 17.5 4.7 0.29 10.8 4.7 2.3 1 1 0 1 1 1 1 Cupin HTH_Crp_2 PF13545.6 AJD66948.1 - 0.02 14.9 0.9 1.3 9.0 0.2 2.7 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain FAD_binding_3 PF01494.19 AJD66949.1 - 3.5e-85 286.3 0.0 4e-85 286.1 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AJD66949.1 - 0.00037 20.7 0.0 0.00087 19.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 AJD66949.1 - 0.00095 18.5 0.3 0.0014 17.9 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 AJD66949.1 - 0.13 11.5 0.1 0.4 9.9 0.1 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD66949.1 - 0.17 11.1 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Thi4 family HI0933_like PF03486.14 AJD66949.1 - 0.2 10.3 0.0 0.3 9.7 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein SE PF08491.10 AJD66949.1 - 0.27 10.2 0.0 0.36 9.8 0.0 1.1 1 0 0 1 1 1 0 Squalene epoxidase SnoaL_2 PF12680.7 AJD66951.1 - 1.9e-10 41.3 0.0 2.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 AJD66951.1 - 2.8e-07 30.4 1.1 4.3e-06 26.5 0.5 2.3 2 1 0 2 2 2 1 SnoaL-like polyketide cyclase FGGY_N PF00370.21 AJD66952.1 - 4.2e-89 298.3 0.7 5.6e-89 297.9 0.7 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 AJD66952.1 - 1.2e-62 211.2 1.4 3.7e-62 209.6 1.3 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 AJD66952.1 - 0.0089 15.6 0.2 0.14 11.6 0.0 2.2 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MIP PF00230.20 AJD66953.1 - 1.8e-49 168.5 12.9 2.1e-49 168.3 12.9 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF1129 PF06570.11 AJD66953.1 - 0.0009 18.8 1.7 0.0015 18.0 0.3 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1129) Transgly_assoc PF04226.13 AJD66953.1 - 0.89 9.9 10.2 0.14 12.4 1.1 3.4 3 0 0 3 3 3 0 Transglycosylase associated protein DAO PF01266.24 AJD66954.1 - 5.4e-47 161.1 2.4 7.5e-47 160.6 2.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO_C PF16901.5 AJD66954.1 - 1.7e-11 44.1 0.2 6.3e-11 42.2 0.1 2.1 3 0 0 3 3 3 1 C-terminal domain of alpha-glycerophosphate oxidase Pyr_redox_2 PF07992.14 AJD66954.1 - 0.024 13.9 0.0 0.056 12.7 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD66954.1 - 0.028 13.5 0.7 0.028 13.5 0.7 1.9 2 0 0 2 2 2 0 FAD binding domain FAD_oxidored PF12831.7 AJD66954.1 - 0.039 13.3 2.3 0.046 13.1 0.9 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 AJD66954.1 - 0.11 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 AJD66954.1 - 0.3 11.3 1.3 2.1 8.6 0.6 2.7 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DeoRC PF00455.22 AJD66955.1 - 1.1e-51 174.9 0.1 1.5e-51 174.5 0.1 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 AJD66955.1 - 3.1e-17 62.0 0.1 1.1e-16 60.3 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 AJD66955.1 - 7.1e-05 22.7 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 AJD66955.1 - 0.01 15.8 0.1 1.1 9.3 0.0 2.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 AJD66955.1 - 0.016 14.9 0.0 0.063 12.9 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_ECF PF07638.11 AJD66955.1 - 0.031 14.2 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 ECF sigma factor MarR PF01047.22 AJD66955.1 - 0.04 13.8 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family TMEM210 PF15195.6 AJD66955.1 - 0.14 12.6 0.1 0.25 11.8 0.1 1.4 1 0 0 1 1 1 0 TMEM210 family Fer2 PF00111.27 AJD66956.1 - 5.7e-11 42.2 1.4 9.5e-11 41.5 1.4 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_1 PF00175.21 AJD66956.1 - 2.2e-09 37.9 0.1 1.8e-07 31.8 0.1 2.4 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 AJD66956.1 - 2.8e-08 34.0 0.0 8.4e-08 32.5 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 AJD66956.1 - 1.1e-05 25.6 0.1 0.0048 17.0 0.0 2.2 1 1 1 2 2 2 2 Ferric reductase NAD binding domain Fer2_4 PF13510.6 AJD66956.1 - 0.15 12.2 1.0 0.63 10.1 1.0 2.1 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Rieske PF00355.26 AJD66957.1 - 1.6e-14 53.6 0.2 3e-14 52.7 0.2 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain PaO PF08417.12 AJD66957.1 - 0.0085 16.2 0.0 0.024 14.8 0.0 1.8 1 0 0 1 1 1 1 Pheophorbide a oxygenase CoA_trans PF01144.23 AJD66958.1 - 1.1e-18 67.5 0.0 1.5e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 AJD66958.1 - 0.17 10.2 1.1 0.24 9.7 0.1 1.6 2 0 0 2 2 2 0 Malonate decarboxylase, alpha subunit, transporter CoA_trans PF01144.23 AJD66959.1 - 7.1e-51 172.7 0.0 8.2e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase SmpA_OmlA PF04355.13 AJD66959.1 - 0.18 11.6 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 SmpA / OmlA family Thiolase_N PF00108.23 AJD66960.1 - 1.3e-79 267.3 0.1 1.6e-79 266.9 0.1 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AJD66960.1 - 1.4e-40 137.8 1.5 2.6e-40 136.9 1.5 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AJD66960.1 - 8.3e-05 22.3 0.1 0.00024 20.7 0.1 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Dioxygenase_C PF00775.21 AJD66961.1 - 1.2e-53 181.3 0.0 1.4e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 Dioxygenase PCDO_beta_N PF12391.8 AJD66961.1 - 9.9e-09 34.7 6.5 2.1e-08 33.6 6.5 1.6 1 0 0 1 1 1 1 Protocatechuate 3,4-dioxygenase beta subunit N terminal CarboxypepD_reg PF13620.6 AJD66961.1 - 4.5e-06 26.8 0.1 1.3e-05 25.4 0.1 1.7 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 AJD66961.1 - 0.094 12.9 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 SdrD B-like domain CarbopepD_reg_2 PF13715.6 AJD66961.1 - 0.19 11.7 0.0 2 8.5 0.0 2.1 2 0 0 2 2 2 0 CarboxypepD_reg-like domain Dioxygenase_C PF00775.21 AJD66962.1 - 4.5e-20 71.9 0.0 1.8e-19 69.9 0.0 1.8 1 1 0 1 1 1 1 Dioxygenase CarboxypepD_reg PF13620.6 AJD66962.1 - 1.4e-05 25.3 0.2 7e-05 23.0 0.1 2.1 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Lipase_C PF18067.1 AJD66962.1 - 0.097 13.2 0.0 0.17 12.5 0.0 1.4 1 0 0 1 1 1 0 Lipase C-terminal domain Lyase_1 PF00206.20 AJD66963.1 - 2.4e-53 181.6 0.0 3.6e-53 181.0 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 AJD66963.1 - 4.5e-14 52.8 5.8 1e-13 51.6 1.1 3.1 2 1 0 2 2 2 1 Adenylosuccinate lyase C-terminus Abhydrolase_1 PF00561.20 AJD66964.1 - 3.6e-15 56.3 0.0 1.7e-13 50.8 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD66964.1 - 8.9e-12 44.8 0.0 1.6e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD66964.1 - 4e-09 37.4 7.8 4.8e-09 37.1 7.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family CMD PF02627.20 AJD66965.1 - 5e-26 90.6 0.9 6.3e-26 90.2 0.1 1.6 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Hydrolase_4 PF12146.8 AJD66966.1 - 3.8e-26 91.8 0.3 6.1e-25 87.9 0.3 2.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD66966.1 - 2e-15 58.0 19.4 3e-15 57.4 19.4 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD66966.1 - 9.2e-15 55.0 0.1 7e-12 45.5 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 AJD66966.1 - 2.5e-05 24.0 0.1 0.0012 18.5 0.1 2.1 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 AJD66966.1 - 0.00048 19.7 0.1 0.15 11.5 0.1 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 AJD66966.1 - 0.0024 17.4 0.0 0.012 15.2 0.0 2.1 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 AJD66966.1 - 0.0091 16.1 0.2 0.05 13.7 0.0 2.1 1 1 1 2 2 2 1 TAP-like protein Thioesterase PF00975.20 AJD66966.1 - 0.015 15.4 0.0 0.021 14.9 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain BAAT_C PF08840.11 AJD66966.1 - 0.048 13.6 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.13 AJD66966.1 - 0.083 12.5 0.0 0.21 11.2 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase (FSH1) IclR PF01614.18 AJD66967.1 - 7.1e-37 126.1 0.2 1.9e-36 124.8 0.1 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AJD66967.1 - 2.6e-12 46.3 7.1 4e-12 45.7 0.7 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.7 AJD66967.1 - 2e-05 24.4 1.5 0.00012 21.8 0.3 2.5 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 AJD66967.1 - 2.3e-05 24.6 0.1 6.3e-05 23.2 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 AJD66967.1 - 4.7e-05 23.2 0.1 0.00017 21.5 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 AJD66967.1 - 0.0025 17.3 0.0 0.0049 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AJD66967.1 - 0.0034 17.2 0.0 0.0066 16.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 AJD66967.1 - 0.0043 16.9 0.1 0.0098 15.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 AJD66967.1 - 0.006 16.6 0.1 0.021 14.9 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 AJD66967.1 - 0.0083 16.1 0.1 0.024 14.6 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 AJD66967.1 - 0.019 14.6 0.3 0.57 9.9 0.1 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 AJD66967.1 - 0.023 14.6 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_6 PF01418.17 AJD66967.1 - 0.036 14.0 0.0 0.6 10.1 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_23 PF13384.6 AJD66967.1 - 0.044 13.6 0.1 0.27 11.1 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_35 PF13693.6 AJD66967.1 - 0.048 13.7 0.3 0.86 9.7 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Cullin PF00888.22 AJD66967.1 - 0.074 11.6 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Cullin family HTH_46 PF15977.5 AJD66967.1 - 0.16 12.0 0.1 0.52 10.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding RIO1 PF01163.22 AJD66968.1 - 1.3e-35 122.7 0.0 1.9e-35 122.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 AJD66968.1 - 9.8e-07 28.9 0.7 9.7e-05 22.4 0.1 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 AJD66968.1 - 0.026 13.9 0.1 6.2 6.1 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Abhydrolase_3 PF07859.13 AJD66969.1 - 5e-66 222.6 2.0 6.3e-66 222.2 2.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 AJD66969.1 - 3.8e-07 29.3 0.0 7.1e-07 28.5 0.0 1.3 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 AJD66969.1 - 4.1e-06 26.4 0.0 0.007 15.9 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 AJD66969.1 - 2.4e-05 24.0 0.0 0.0073 15.9 0.0 2.6 2 1 1 3 3 3 2 Dienelactone hydrolase family Hydrolase_4 PF12146.8 AJD66969.1 - 7e-05 22.2 0.4 0.11 11.7 0.4 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Chlorophyllase2 PF12740.7 AJD66969.1 - 0.0063 15.5 0.0 0.0096 14.9 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme HCV_NS4a PF01006.20 AJD66969.1 - 0.064 13.0 5.3 4.2 7.2 0.0 2.6 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a Lipase_3 PF01764.25 AJD66969.1 - 0.065 13.1 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) AXE1 PF05448.12 AJD66969.1 - 0.16 10.6 0.2 0.23 10.1 0.2 1.1 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) DUF2490 PF10677.9 AJD66970.1 - 1e-45 156.0 6.2 1.2e-45 155.8 6.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2490) GIDA PF01134.22 AJD66971.1 - 1.3e-162 541.4 0.0 1.6e-162 541.1 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A GIDA_assoc PF13932.6 AJD66971.1 - 4.3e-72 242.7 0.0 5.8e-72 242.3 0.0 1.2 1 0 0 1 1 1 1 GidA associated domain FAD_oxidored PF12831.7 AJD66971.1 - 2e-06 27.5 2.8 3.1e-06 26.8 2.8 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AJD66971.1 - 4e-05 23.0 1.6 8.2e-05 22.0 1.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD66971.1 - 4.7e-05 22.6 11.3 0.00032 19.9 3.2 2.6 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 AJD66971.1 - 0.0022 16.7 2.1 0.0074 15.0 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 AJD66971.1 - 0.0024 17.2 0.1 0.74 9.0 0.2 2.8 3 0 0 3 3 3 2 Thi4 family AlaDh_PNT_C PF01262.21 AJD66971.1 - 0.017 14.4 0.1 0.038 13.3 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 AJD66971.1 - 0.029 13.6 0.1 0.067 12.4 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M66 PF10462.9 AJD66972.1 - 2.6 6.9 3.7 3.5 6.5 3.7 1.1 1 0 0 1 1 1 0 Peptidase M66 PALP PF00291.25 AJD66973.1 - 1.8e-69 234.4 10.0 2e-69 234.2 10.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 AJD66973.1 - 0.046 13.6 0.5 0.046 13.6 0.5 2.1 2 1 1 3 3 3 0 DNA / pantothenate metabolism flavoprotein DUF218 PF02698.17 AJD66974.1 - 9.2e-30 103.3 0.1 1.2e-29 103.0 0.1 1.1 1 0 0 1 1 1 1 DUF218 domain SnoaL_2 PF12680.7 AJD66975.1 - 3.8e-17 62.8 2.8 4.6e-17 62.5 2.8 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 AJD66975.1 - 9.3e-09 35.1 0.3 1.2e-08 34.8 0.3 1.2 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase LEH PF07858.12 AJD66975.1 - 1.5e-05 25.0 1.1 4.3e-05 23.6 1.1 1.7 1 1 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain SnoaL_3 PF13474.6 AJD66975.1 - 3.2e-05 24.2 0.1 5.1e-05 23.5 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 AJD66975.1 - 0.00061 20.2 0.4 0.001 19.5 0.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) NTF2 PF02136.20 AJD66975.1 - 0.0029 18.2 0.0 0.0039 17.8 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_4 PF13577.6 AJD66975.1 - 0.0064 16.6 1.0 0.0086 16.2 1.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain Asp_Arg_Hydrox PF05118.15 AJD66976.1 - 7.2e-48 162.4 0.0 9.9e-48 161.9 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_2 PF07883.11 AJD66976.1 - 0.11 12.2 0.1 0.57 9.9 0.0 2.0 2 0 0 2 2 2 0 Cupin domain Methyltransf_11 PF08241.12 AJD66977.1 - 3.9e-20 72.3 0.0 7e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD66977.1 - 1.2e-18 67.6 0.0 2.3e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD66977.1 - 3.3e-12 46.5 0.0 5.1e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD66977.1 - 5.8e-11 43.0 0.0 1.1e-10 42.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD66977.1 - 7.7e-11 42.0 0.0 1.2e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AJD66977.1 - 1.6e-09 37.5 0.0 2.1e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 AJD66977.1 - 1.2e-05 24.9 0.0 1.9e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 AJD66977.1 - 0.0019 17.5 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 AJD66977.1 - 0.006 16.5 0.0 0.01 15.7 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 AJD66977.1 - 0.0085 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Rsm22 PF09243.10 AJD66977.1 - 0.022 14.0 0.0 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 FtsJ PF01728.19 AJD66977.1 - 0.096 12.8 0.0 0.25 11.4 0.0 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase adh_short_C2 PF13561.6 AJD66978.1 - 2.1e-38 132.2 0.2 2.8e-38 131.8 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD66978.1 - 7.7e-34 116.9 0.0 9.7e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD66978.1 - 0.00055 19.9 0.0 0.00083 19.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Abhydrolase_6 PF12697.7 AJD66979.1 - 2.7e-20 73.9 19.8 3.2e-20 73.7 19.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD66979.1 - 8.6e-18 64.9 0.7 5.4e-16 59.0 0.7 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD66979.1 - 2.2e-11 43.5 0.9 2e-10 40.4 0.9 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 AJD66979.1 - 2e-05 24.8 0.2 4.4e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.10 AJD66979.1 - 0.0042 17.2 0.0 0.0083 16.2 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 AJD66979.1 - 0.0063 16.3 0.0 0.63 9.8 0.0 2.2 2 0 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.20 AJD66979.1 - 0.015 15.0 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Putative esterase FSH1 PF03959.13 AJD66979.1 - 0.13 11.9 0.0 0.79 9.3 0.0 2.0 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Aminotran_1_2 PF00155.21 AJD66981.1 - 4.4e-51 174.2 0.0 5.4e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 AJD66981.1 - 0.007 15.4 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V FBPase_glpX PF03320.13 AJD66981.1 - 0.024 13.5 0.0 0.039 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Beta_elim_lyase PF01212.21 AJD66981.1 - 0.11 11.7 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase BATS PF06968.13 AJD66982.1 - 1.2e-20 73.4 0.1 4.4e-20 71.6 0.0 1.9 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 AJD66982.1 - 4.2e-16 59.8 0.1 1.6e-15 57.8 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Pribosyltran PF00156.27 AJD66983.1 - 2.3e-07 30.5 0.0 3.2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AJD66983.1 - 0.025 14.0 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 AJD66983.1 - 0.079 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase DZR PF12773.7 AJD66983.1 - 0.3 11.2 11.5 0.96 9.5 9.9 2.0 1 1 2 3 3 3 0 Double zinc ribbon Prok-RING_1 PF14446.6 AJD66983.1 - 2.3 8.2 14.0 0.74 9.8 4.5 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 UbiA PF01040.18 AJD66984.1 - 5.2e-60 202.9 30.5 6.5e-60 202.5 30.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family LRR_8 PF13855.6 AJD66986.1 - 5.5e-14 51.7 13.0 3.7e-06 26.6 1.3 4.6 2 1 4 6 6 6 6 Leucine rich repeat LRR_4 PF12799.7 AJD66986.1 - 1.6e-07 31.5 12.7 0.15 12.5 0.3 5.5 4 1 2 6 6 6 5 Leucine Rich repeats (2 copies) NolX PF05819.11 AJD66987.1 - 5.7e-208 691.6 13.9 2.8e-178 593.7 9.5 2.1 2 0 0 2 2 2 2 NolX protein T3SS_HrpK1 PF16937.5 AJD66987.1 - 2.3e-10 40.6 13.7 1e-05 25.3 0.6 3.5 3 0 0 3 3 3 3 Type III secretion system translocator protein, HrpF CesT PF05932.13 AJD66990.1 - 8e-06 26.0 0.0 1.2e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 Tir chaperone protein (CesT) family F_actin_bind PF08919.10 AJD66992.1 - 0.0099 16.0 0.1 0.015 15.4 0.0 1.3 1 1 0 1 1 1 1 F-actin binding Yop-YscD_cpl PF16697.5 AJD66993.1 - 5e-06 26.7 0.0 1e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Bac_export_3 PF01313.19 AJD66995.1 - 2.7e-19 68.9 7.1 3.3e-19 68.6 7.1 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 3 CDP-OH_P_tran_2 PF08009.11 AJD66995.1 - 0.031 14.2 2.4 0.031 14.2 2.4 2.4 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 DUF1002 PF06207.11 AJD66995.1 - 0.068 12.7 0.1 0.078 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) PhaG_MnhG_YufB PF03334.14 AJD66995.1 - 0.077 13.2 6.2 0.11 12.7 6.2 1.3 1 0 0 1 1 1 0 Na+/H+ antiporter subunit FliP PF00813.20 AJD66996.1 - 2.3e-64 216.8 6.9 2.9e-64 216.5 6.9 1.0 1 0 0 1 1 1 1 FliP family FliMN_C PF01052.20 AJD66997.1 - 8.9e-15 54.4 0.6 2.5e-12 46.6 0.6 2.5 2 0 0 2 2 2 2 Type III flagellar switch regulator (C-ring) FliN C-term HpaP PF09483.10 AJD66998.1 - 1.1e-28 99.4 0.3 1.7e-28 98.7 0.3 1.3 1 0 0 1 1 1 1 Type III secretion protein (HpaP) Flg_hook PF02120.16 AJD66998.1 - 3.6e-05 23.6 0.6 0.0005 19.9 0.0 2.2 2 0 0 2 2 2 1 Flagellar hook-length control protein FliK FHIPEP PF00771.20 AJD66999.1 - 5.3e-202 672.8 14.5 1.4e-155 519.5 8.6 2.0 1 1 1 2 2 2 2 FHIPEP family EutK_C PF16365.5 AJD66999.1 - 0.12 12.4 1.1 8 6.6 0.1 3.2 2 0 0 2 2 2 0 Ethanolamine utilization protein EutK C-terminus Bac_export_2 PF01312.19 AJD67000.1 - 7.7e-105 350.7 0.0 8.7e-105 350.6 0.0 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family LPG_synthase_TM PF03706.13 AJD67000.1 - 0.018 14.6 8.2 0.03 13.9 8.2 1.3 1 0 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region HrpB1_HrpK PF09613.10 AJD67001.1 - 1.7e-44 150.5 0.0 1.9e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB1_HrpK) ANAPC3 PF12895.7 AJD67001.1 - 0.023 14.9 0.1 0.042 14.1 0.1 1.5 1 1 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 HrpB2 PF09487.10 AJD67002.1 - 3.2e-38 130.7 7.5 3.8e-38 130.4 7.5 1.1 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB2) DUF3947 PF13135.6 AJD67002.1 - 0.053 13.7 0.7 0.053 13.7 0.7 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3947) YscJ_FliF PF01514.17 AJD67003.1 - 4.2e-28 98.3 0.0 6.9e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family HrpB4 PF09502.10 AJD67004.1 - 2.8e-39 135.2 17.6 3.2e-39 135.0 17.6 1.0 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB4) FliH PF02108.16 AJD67005.1 - 7.1e-10 39.0 3.5 1.3e-09 38.1 0.0 2.1 2 0 0 2 2 2 1 Flagellar assembly protein FliH DivIVA PF05103.13 AJD67005.1 - 0.0011 19.1 2.4 0.0011 19.1 2.4 1.7 2 0 0 2 2 2 1 DivIVA protein ATP-synt_B PF00430.18 AJD67005.1 - 0.0013 18.8 9.8 0.0013 18.8 9.8 2.8 2 1 0 3 3 3 2 ATP synthase B/B' CF(0) HrpE PF06188.12 AJD67005.1 - 0.0031 17.4 17.1 0.023 14.6 17.3 2.2 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E SoPB_HTH PF18090.1 AJD67005.1 - 1.2 9.4 4.7 7 6.9 0.2 3.3 2 1 1 3 3 3 0 Centromere-binding protein HTH domain ATP-synt_ab PF00006.25 AJD67006.1 - 2.9e-71 239.5 0.0 3.8e-71 239.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 AJD67006.1 - 3.5e-24 84.4 0.1 5.8e-24 83.7 0.1 1.4 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain ATP-synt_ab_N PF02874.23 AJD67006.1 - 1.1e-07 32.2 1.5 2.4e-07 31.2 1.5 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ABC_tran PF00005.27 AJD67006.1 - 0.023 15.2 0.0 0.046 14.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF87 PF01935.17 AJD67006.1 - 0.051 13.7 0.1 0.098 12.7 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_22 PF13401.6 AJD67006.1 - 0.15 12.3 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab_C PF00306.27 AJD67006.1 - 0.16 12.3 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta chain, C terminal domain HrpB7 PF09486.10 AJD67007.1 - 9.9e-32 110.5 31.7 1.2e-31 110.3 31.7 1.0 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) YscO-like PF16789.5 AJD67007.1 - 2.9e-05 24.2 4.7 4.6e-05 23.5 4.7 1.3 1 0 0 1 1 1 1 YscO-like protein TPR_MLP1_2 PF07926.12 AJD67007.1 - 0.063 13.3 15.0 0.076 13.1 9.8 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein PRKG1_interact PF15898.5 AJD67007.1 - 0.086 13.8 10.3 0.96 10.4 4.9 2.2 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain Zwint PF15556.6 AJD67007.1 - 0.24 10.8 13.8 3.9 6.9 10.1 2.2 2 0 0 2 2 2 0 ZW10 interactor YscO PF07321.12 AJD67007.1 - 0.25 11.3 33.4 0.13 12.2 5.6 2.4 2 1 0 2 2 2 0 Type III secretion protein YscO MCU PF04678.13 AJD67007.1 - 0.26 11.4 11.4 0.77 9.8 0.8 2.2 1 1 1 2 2 2 0 Mitochondrial calcium uniporter GAS PF13851.6 AJD67007.1 - 0.73 9.2 8.3 2 7.8 5.3 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding CC2-LZ PF16516.5 AJD67007.1 - 0.81 10.1 11.2 0.59 10.5 6.7 2.1 2 0 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF724 PF05266.14 AJD67007.1 - 0.89 9.3 9.1 0.71 9.7 4.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Fez1 PF06818.15 AJD67007.1 - 1 9.8 15.0 15 6.0 15.0 2.0 1 1 0 1 1 1 0 Fez1 COG2 PF06148.11 AJD67007.1 - 1.7 8.8 5.6 2.1 8.5 3.0 2.0 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.8 AJD67007.1 - 2 5.8 18.2 0.96 6.9 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 AJD67007.1 - 2.6 7.2 9.7 7.3 5.7 0.3 2.0 1 1 0 2 2 2 0 TMPIT-like protein AAA_27 PF13514.6 AJD67007.1 - 3.4 7.2 8.9 0.65 9.6 5.0 1.7 2 0 0 2 2 2 0 AAA domain Exonuc_VII_L PF02601.15 AJD67007.1 - 3.5 7.1 11.8 6.1 6.3 11.8 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit CENP-H PF05837.12 AJD67007.1 - 5.1 7.5 13.3 6.1 7.3 8.7 2.1 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Spc7 PF08317.11 AJD67007.1 - 7.4 5.4 14.3 7.3 5.4 8.9 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein SlyX PF04102.12 AJD67007.1 - 8.7 7.0 10.4 61 4.3 7.6 2.6 2 1 0 2 2 2 0 SlyX Bac_export_1 PF01311.20 AJD67008.1 - 1.3e-48 165.6 21.7 1.6e-48 165.3 21.7 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Secretin PF00263.21 AJD67009.1 - 1.7e-39 135.2 0.1 2.5e-39 134.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein Secretin_N PF03958.17 AJD67009.1 - 2.6e-21 75.8 9.7 3.1e-17 62.7 1.8 4.0 3 2 0 3 3 3 2 Bacterial type II/III secretion system short domain TrbL PF04610.14 AJD67010.1 - 1.8 8.3 6.0 1.5 8.5 0.6 2.0 1 1 1 2 2 2 0 TrbL/VirB6 plasmid conjugal transfer protein SLT PF01464.20 AJD67011.1 - 6e-19 67.8 0.0 8.2e-19 67.4 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain Lys PF00062.20 AJD67011.1 - 0.05 13.8 0.0 0.071 13.4 0.0 1.3 1 0 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family Ribosomal_S30AE PF02482.19 AJD67013.1 - 5.1e-07 30.4 0.1 5.8e-07 30.2 0.1 1.0 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein Glyco_hydro2_C5 PF18565.1 AJD67013.1 - 0.08 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase family 2 C-terminal domain 5 MS_channel PF00924.18 AJD67014.1 - 3.1e-43 147.7 0.0 3.1e-43 147.7 0.0 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF3772 PF12607.8 AJD67014.1 - 1.3e-15 56.9 6.6 1.3e-15 56.9 6.6 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF3772) Sulfatase PF00884.23 AJD67015.1 - 2.2e-24 86.4 0.0 3.4e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 AJD67015.1 - 0.038 13.6 0.1 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase ABC1 PF03109.16 AJD67016.1 - 1.1e-28 99.8 0.0 2.6e-28 98.6 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 AJD67016.1 - 0.0066 16.4 1.7 0.0066 16.4 1.7 2.8 2 2 0 2 2 2 1 Phosphotransferase enzyme family DUF350 PF03994.14 AJD67016.1 - 8.6 6.6 11.1 9.1 6.5 2.7 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF350) DUF808 PF05661.12 AJD67017.1 - 4.2e-111 370.8 18.3 5e-111 370.6 18.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF808) GGDEF PF00990.21 AJD67018.1 - 4.1e-35 120.9 1.1 6e-35 120.4 0.3 1.7 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain FUSC-like PF12805.7 AJD67018.1 - 0.005 16.0 0.2 0.005 16.0 0.2 1.9 2 0 0 2 2 2 1 FUSC-like inner membrane protein yccS GGDEF_2 PF17853.1 AJD67018.1 - 0.041 14.1 0.4 0.041 14.1 0.4 3.5 3 2 0 3 3 3 0 GGDEF-like domain Snapin_Pallidin PF14712.6 AJD67018.1 - 0.12 12.9 1.7 2 8.9 0.0 3.1 3 1 0 3 3 3 0 Snapin/Pallidin Ubiquitin_3 PF14836.6 AJD67018.1 - 0.17 11.9 0.0 0.49 10.4 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-like domain Glyco_transf_5 PF08323.11 AJD67019.1 - 3.7e-62 210.2 0.0 5.7e-62 209.6 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 AJD67019.1 - 7.2e-14 51.7 0.0 1.2e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD67019.1 - 6.5e-13 49.3 0.3 1.3e-10 41.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD67019.1 - 4.5e-08 33.7 1.7 1.9e-05 25.1 4.5 2.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 AJD67019.1 - 0.00017 21.7 1.6 0.002 18.1 1.6 2.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 CBM_48 PF02922.18 AJD67020.1 - 5.2e-24 84.4 0.0 4e-22 78.4 0.0 2.5 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase_C PF02806.18 AJD67020.1 - 6.7e-24 84.2 0.0 1.4e-23 83.2 0.0 1.6 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 AJD67020.1 - 2.9e-09 37.0 0.0 2.3e-06 27.4 0.0 2.2 1 1 1 2 2 2 2 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 AJD67020.1 - 0.042 14.1 0.1 0.57 10.4 0.0 2.5 3 0 0 3 3 3 0 Glycogen recognition site of AMP-activated protein kinase Cellulase PF00150.18 AJD67020.1 - 0.17 11.3 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) Alpha-amylase PF00128.24 AJD67021.1 - 1.2e-17 64.5 0.0 8.2e-12 45.3 0.0 2.7 2 1 0 3 3 3 2 Alpha amylase, catalytic domain DUF3459 PF11941.8 AJD67021.1 - 4.2e-09 36.6 1.0 4.2e-09 36.6 1.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF3459) CBM_48 PF02922.18 AJD67021.1 - 3.1e-05 24.2 0.1 0.00025 21.3 0.0 2.4 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aminotran_1_2 PF00155.21 AJD67021.1 - 0.25 10.4 0.0 0.49 9.5 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II Glyco_hydro_77 PF02446.17 AJD67022.1 - 6.3e-88 295.7 0.0 8.5e-72 242.5 0.0 2.1 1 1 1 2 2 2 2 4-alpha-glucanotransferase Alpha-amylase PF00128.24 AJD67023.1 - 2.5e-18 66.7 0.0 3e-14 53.3 0.0 3.2 3 0 0 3 3 3 3 Alpha amylase, catalytic domain DUF3459 PF11941.8 AJD67023.1 - 0.00052 20.3 0.7 0.00052 20.3 0.7 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3459) DUF2934 PF11154.8 AJD67024.1 - 3.4e-12 45.8 9.3 6.7e-12 44.9 9.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2934) CBM_48 PF02922.18 AJD67025.1 - 2.3e-21 75.9 0.0 8.8e-21 74.1 0.0 2.0 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 AJD67025.1 - 5.6e-13 49.2 0.1 1.3e-07 31.6 0.0 3.2 2 1 1 3 3 3 3 Alpha amylase, catalytic domain GlgX_C PF18390.1 AJD67025.1 - 0.0074 16.1 1.1 0.05 13.4 0.2 2.5 2 1 0 2 2 2 1 Glycogen debranching enzyme C-terminal domain DUF3459 PF11941.8 AJD67025.1 - 0.19 12.0 3.6 2.3 8.6 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3459) NAD_binding_10 PF13460.6 AJD67026.1 - 5.4e-08 32.9 0.0 7.4e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 AJD67026.1 - 2.1e-05 24.1 0.0 3.2e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family HIM1 PF08732.10 AJD67026.1 - 2.8e-05 23.7 0.0 3.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 HIM1 NmrA PF05368.13 AJD67026.1 - 0.0042 16.7 0.0 0.014 15.0 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 AJD67026.1 - 0.01 15.0 0.1 0.05 12.8 0.0 2.0 2 1 0 2 2 2 0 Male sterility protein DapB_N PF01113.20 AJD67026.1 - 0.084 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.17 AJD67026.1 - 0.15 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain adh_short_C2 PF13561.6 AJD67027.1 - 8.1e-55 185.9 1.9 9.3e-55 185.7 1.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67027.1 - 6.9e-48 162.7 0.1 8e-48 162.5 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD67027.1 - 7.5e-11 42.3 1.5 1.2e-10 41.6 1.5 1.3 1 0 0 1 1 1 1 KR domain Glyco_trans_4_4 PF13579.6 AJD67027.1 - 0.00037 21.0 6.1 0.019 15.4 2.8 2.3 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 AJD67027.1 - 0.0016 18.5 0.0 0.64 10.0 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Eno-Rase_NADH_b PF12242.8 AJD67027.1 - 0.0095 15.7 0.1 0.02 14.6 0.1 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.13 AJD67027.1 - 0.013 15.0 0.3 0.019 14.5 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.21 AJD67027.1 - 0.024 14.1 1.8 0.045 13.2 1.8 1.5 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 AJD67027.1 - 0.096 12.6 0.2 0.18 11.7 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AJD67027.1 - 0.13 12.9 0.4 0.31 11.6 0.4 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 AJD67027.1 - 0.24 12.0 0.4 0.44 11.2 0.4 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AJD67028.1 - 8.2e-24 84.4 0.2 8.2e-24 84.4 0.2 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 AJD67028.1 - 1.2e-09 37.9 0.3 6.6e-09 35.4 0.1 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD67028.1 - 1.2e-05 24.6 6.0 2.4e-05 23.6 0.0 3.1 3 0 0 3 3 3 1 FAD binding domain K_oxygenase PF13434.6 AJD67028.1 - 0.00018 20.8 0.1 1 8.4 0.0 3.1 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 AJD67028.1 - 0.00082 18.7 0.0 0.0069 15.7 0.0 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 AJD67028.1 - 0.011 15.9 0.1 0.023 14.9 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 AJD67028.1 - 0.066 13.8 1.7 7.8 7.1 0.7 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD67028.1 - 0.17 11.1 0.3 1.2 8.3 0.1 2.3 3 0 0 3 3 3 0 Thi4 family NAD_binding_8 PF13450.6 AJD67028.1 - 0.3 11.4 1.5 1 9.6 0.6 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain SlyX PF04102.12 AJD67028.1 - 0.4 11.3 2.1 19 5.9 0.1 3.0 3 0 0 3 3 3 0 SlyX VirK PF06903.12 AJD67029.1 - 2.3e-38 130.2 0.0 2.9e-38 129.9 0.0 1.1 1 0 0 1 1 1 1 VirK protein OEP PF02321.18 AJD67030.1 - 7.8e-44 149.7 26.9 2.4e-23 82.9 5.6 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein AbiEi_2 PF09952.9 AJD67030.1 - 0.16 12.2 0.2 0.16 12.2 0.2 2.1 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin, Type IV TA system TetR_N PF00440.23 AJD67031.1 - 3.5e-11 42.7 2.4 3.8e-11 42.6 1.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 AJD67031.1 - 4.1e-09 36.5 0.0 8.7e-09 35.4 0.0 1.5 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 AJD67031.1 - 6.9e-05 23.1 0.0 0.00011 22.4 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain CM_2 PF01817.21 AJD67031.1 - 0.017 15.5 0.0 0.04 14.3 0.0 1.8 1 1 0 1 1 1 0 Chorismate mutase type II HlyD_D23 PF16576.5 AJD67032.1 - 2e-13 50.1 5.1 2.9e-13 49.5 5.1 1.2 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD67032.1 - 9.7e-11 42.3 3.1 4.1e-07 30.7 0.1 2.6 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD67032.1 - 2.9e-07 30.2 15.6 4.6e-06 26.4 2.2 3.2 3 0 0 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AJD67032.1 - 0.00051 19.8 0.0 0.13 12.2 0.0 2.4 2 0 0 2 2 2 2 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 AJD67032.1 - 0.0081 15.9 0.0 2.1 8.1 0.0 2.6 2 0 0 2 2 2 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 AJD67032.1 - 0.17 11.9 0.1 21 5.1 0.0 2.5 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ACR_tran PF00873.19 AJD67033.1 - 1.1e-140 470.3 11.3 1.4e-140 470.0 11.3 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family adh_short PF00106.25 AJD67034.1 - 5.1e-51 172.9 1.0 6.8e-51 172.5 1.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD67034.1 - 7.3e-37 127.2 2.3 9.7e-37 126.8 2.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD67034.1 - 2.6e-07 30.8 1.1 2.7e-06 27.4 1.1 2.1 1 1 0 1 1 1 1 KR domain DUF1776 PF08643.10 AJD67034.1 - 8.4e-07 28.6 0.0 5e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 AJD67034.1 - 2e-06 27.5 0.8 6.8e-06 25.7 0.8 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD67034.1 - 4.8e-05 23.3 2.5 7.6e-05 22.7 2.5 1.3 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 AJD67034.1 - 0.00027 20.4 0.8 0.00054 19.5 0.8 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 AJD67034.1 - 0.055 12.6 0.4 0.094 11.8 0.4 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DEAD PF00270.29 AJD67036.1 - 2.3e-46 157.8 0.0 1.8e-44 151.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD67036.1 - 6.5e-27 94.1 0.0 1.3e-26 93.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 AJD67036.1 - 0.00033 20.7 0.0 0.00088 19.3 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 AJD67036.1 - 0.0016 18.7 0.0 0.0052 17.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain DUF4123 PF13503.6 AJD67036.1 - 0.0069 16.8 0.4 0.0069 16.8 0.4 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4123) Flavi_DEAD PF07652.14 AJD67036.1 - 0.078 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Flavivirus DEAD domain NACHT PF05729.12 AJD67036.1 - 4.9 7.1 10.0 1.4e+02 2.3 10.0 2.3 1 1 0 1 1 1 0 NACHT domain 2-oxoacid_dh PF00198.23 AJD67038.1 - 8.2e-47 159.6 0.1 1.7e-45 155.3 0.1 2.1 1 1 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 AJD67038.1 - 1e-17 63.7 0.3 2.2e-17 62.6 0.0 1.8 2 0 0 2 2 2 1 Biotin-requiring enzyme E3_binding PF02817.17 AJD67038.1 - 4.8e-09 36.4 0.5 4.8e-09 36.4 0.5 2.4 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 AJD67038.1 - 3.3e-05 23.6 2.5 0.1 12.5 0.0 2.9 3 0 0 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.19 AJD67038.1 - 0.00077 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage H-protein SH3_2 PF07653.17 AJD67039.1 - 3.1e-11 42.8 0.0 2.6e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 Variant SH3 domain SH3_9 PF14604.6 AJD67039.1 - 0.00014 21.6 1.3 0.016 15.1 0.2 2.2 2 0 0 2 2 2 2 Variant SH3 domain SH3_1 PF00018.28 AJD67039.1 - 0.0011 18.6 2.2 0.0015 18.1 0.4 2.1 2 0 0 2 2 2 1 SH3 domain SH3_16 PF18348.1 AJD67039.1 - 0.0079 16.0 2.6 0.0079 16.0 2.6 2.2 2 0 0 2 2 2 1 Bacterial dipeptidyl-peptidase Sh3 domain DUF2442 PF10387.9 AJD67039.1 - 0.022 15.0 0.0 0.31 11.4 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2442) Transket_pyr PF02779.24 AJD67040.1 - 4.6e-43 146.9 0.0 7.8e-43 146.2 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 AJD67040.1 - 1.2e-38 131.8 0.1 2.3e-38 130.9 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 AJD67040.1 - 0.0022 18.2 0.0 0.0042 17.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 AJD67041.1 - 6.2e-69 232.2 0.0 7.2e-69 232.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 AJD67041.1 - 6.4e-05 22.3 0.0 0.00019 20.8 0.0 1.6 1 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 AJD67041.1 - 0.00043 20.1 0.1 0.00094 19.0 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GTP1_OBG PF01018.22 AJD67041.1 - 0.14 11.7 0.0 0.91 9.1 0.0 2.2 3 0 0 3 3 3 0 GTP1/OBG LTD PF00932.19 AJD67042.1 - 9e-16 58.2 0.4 4.8e-15 55.9 0.1 2.5 2 0 0 2 2 2 1 Lamin Tail Domain Calx-beta PF03160.14 AJD67042.1 - 5e-09 36.3 0.1 2e-08 34.3 0.0 2.0 2 0 0 2 2 2 1 Calx-beta domain Exo_endo_phos PF03372.23 AJD67042.1 - 5.2e-07 29.4 0.9 1e-06 28.5 0.9 1.5 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family CARDB PF07705.11 AJD67042.1 - 0.0016 18.7 0.0 0.015 15.6 0.0 2.7 1 1 0 1 1 1 1 CARDB DUF11 PF01345.18 AJD67042.1 - 3.2 8.1 21.7 0.16 12.3 2.3 5.4 5 0 0 5 5 5 0 Domain of unknown function DUF11 Trp_dioxygenase PF03301.13 AJD67043.1 - 1.4e-63 215.4 2.2 6.8e-41 140.7 0.1 2.1 1 1 0 2 2 2 2 Tryptophan 2,3-dioxygenase DUF3390 PF11870.8 AJD67043.1 - 0.11 12.9 0.0 0.72 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3390) PTR2 PF00854.21 AJD67044.1 - 9.2e-61 205.8 19.7 1.6e-60 205.0 19.7 1.3 1 1 0 1 1 1 1 POT family MFS_1 PF07690.16 AJD67044.1 - 4.9e-13 48.7 75.0 1.9e-07 30.3 43.9 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Thioredoxin_7 PF13899.6 AJD67045.1 - 4.8e-08 33.1 0.0 6.8e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredox_DsbH PF03190.15 AJD67045.1 - 4.9e-05 23.4 0.0 6.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_2 PF13098.6 AJD67045.1 - 0.015 15.8 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain DUF1180 PF06679.12 AJD67045.1 - 0.033 14.6 0.6 0.039 14.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Redoxin PF08534.10 AJD67045.1 - 0.037 13.8 0.0 0.25 11.0 0.0 1.9 1 1 1 2 2 2 0 Redoxin MarR_2 PF12802.7 AJD67046.1 - 5.2e-13 48.7 1.3 6.2e-12 45.2 0.2 2.6 3 0 0 3 3 3 1 MarR family MarR PF01047.22 AJD67046.1 - 1.2e-10 41.1 0.5 6e-09 35.7 0.0 3.0 3 0 0 3 3 3 1 MarR family HTH_27 PF13463.6 AJD67046.1 - 1.7e-09 38.1 0.1 4.7e-08 33.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 AJD67046.1 - 3.8e-05 23.5 0.0 0.00012 21.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 AJD67046.1 - 0.00041 20.1 0.1 0.00084 19.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 AJD67046.1 - 0.00073 19.1 0.1 0.0024 17.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 AJD67046.1 - 0.022 14.5 0.0 0.095 12.4 0.0 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 AJD67046.1 - 0.026 14.6 0.1 0.083 13.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Cullin_Nedd8 PF10557.9 AJD67046.1 - 0.043 13.8 0.0 3.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Cullin protein neddylation domain Rrf2 PF02082.20 AJD67046.1 - 0.074 13.4 0.0 2.4 8.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator SMC_ScpB PF04079.16 AJD67046.1 - 0.093 12.4 0.1 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_34 PF13601.6 AJD67046.1 - 0.16 12.1 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PaaX PF07848.12 AJD67046.1 - 0.25 11.6 1.6 3.1 8.1 0.9 2.5 2 1 0 2 2 2 0 PaaX-like protein Glyoxalase_5 PF14696.6 AJD67047.1 - 3.4e-59 199.0 0.0 6.9e-59 198.0 0.0 1.5 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Glyoxalase PF00903.25 AJD67047.1 - 3.6e-16 59.5 0.0 9.8e-16 58.1 0.0 1.7 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 AJD67047.1 - 6e-08 32.9 0.0 1.8e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HgmA PF04209.13 AJD67048.1 - 8.5e-206 683.6 0.0 9.7e-206 683.5 0.0 1.0 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase DUF2148 PF09918.9 AJD67049.1 - 0.14 12.2 0.2 0.32 11.1 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) PhaG_MnhG_YufB PF03334.14 AJD67051.1 - 1e-24 86.5 6.3 1.3e-24 86.3 6.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 AJD67052.1 - 3.8e-19 68.8 2.9 3.8e-19 68.8 2.9 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 AJD67053.1 - 1.1e-41 142.0 0.8 1.3e-41 141.8 0.8 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 AJD67054.1 - 3.9e-31 108.3 18.9 3.9e-31 108.3 18.9 1.5 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 AJD67054.1 - 0.0035 16.7 6.0 0.0035 16.7 6.0 2.1 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 AJD67055.1 - 1.4e-22 79.3 0.5 1.7e-22 79.1 0.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RVP_2 PF08284.11 AJD67055.1 - 0.061 13.1 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Retroviral aspartyl protease Proton_antipo_M PF00361.20 AJD67056.1 - 1.6e-66 224.5 22.1 1.6e-66 224.5 22.1 3.0 5 0 0 5 5 5 1 Proton-conducting membrane transporter MnhB PF04039.13 AJD67056.1 - 6.1e-30 104.1 12.2 6.1e-30 104.1 12.2 8.5 3 2 8 11 11 11 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 AJD67056.1 - 8.6e-18 64.3 9.9 8.6e-18 64.3 9.9 5.9 7 0 0 7 7 7 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 AJD67056.1 - 6.2e-10 39.0 2.6 2.4e-09 37.1 0.9 2.9 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3464 PF11947.8 AJD67056.1 - 0.0043 16.8 0.6 0.015 15.1 0.6 1.9 1 0 0 1 1 1 1 Photosynthesis affected mutant 68 Epimerase PF01370.21 AJD67057.1 - 9.4e-14 51.5 0.0 8.5e-06 25.4 0.0 2.5 2 1 1 3 3 3 2 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AJD67057.1 - 8e-08 31.7 0.1 0.0098 15.0 0.1 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.6 AJD67057.1 - 8.7e-06 25.7 0.3 2.8e-05 24.1 0.3 2.0 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 AJD67057.1 - 0.00079 19.0 0.0 0.02 14.5 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family 3Beta_HSD PF01073.19 AJD67057.1 - 0.00081 18.5 0.0 0.07 12.1 0.0 2.1 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 AJD67057.1 - 0.0062 16.0 0.0 0.06 12.7 0.0 2.1 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_2 PF03446.15 AJD67057.1 - 0.019 15.2 0.0 0.034 14.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 AJD67057.1 - 0.098 13.3 0.0 0.31 11.6 0.0 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF962 PF06127.11 AJD67058.1 - 1.1e-25 89.5 0.5 1.5e-25 89.1 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF962) LptF_LptG PF03739.14 AJD67058.1 - 0.32 9.8 5.2 0.12 11.2 3.1 1.4 1 1 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Peptidase_M4_C PF02868.15 AJD67059.1 - 1.3e-50 171.6 1.0 1.3e-50 171.6 1.0 1.7 2 0 0 2 2 2 1 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4 PF01447.18 AJD67059.1 - 4.5e-48 163.5 6.0 4.5e-48 163.5 6.0 1.8 2 0 0 2 2 2 1 Thermolysin metallopeptidase, catalytic domain FTP PF07504.13 AJD67059.1 - 5.3e-14 51.8 0.1 1.6e-13 50.3 0.1 1.8 1 0 0 1 1 1 1 Fungalysin/Thermolysin Propeptide Motif PepSY PF03413.19 AJD67059.1 - 0.0014 19.2 0.0 0.0028 18.2 0.0 1.6 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain Peptidase_M23 PF01551.22 AJD67060.1 - 2.1e-18 66.3 2.5 5.9e-18 64.9 2.5 1.8 1 0 0 1 1 1 1 Peptidase family M23 PG_binding_1 PF01471.18 AJD67060.1 - 1.6e-16 60.2 1.6 3.6e-16 59.1 1.6 1.7 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Glyco_hydro_19 PF00182.19 AJD67060.1 - 5.1e-08 33.1 0.1 1.1e-05 25.5 0.0 2.3 2 0 0 2 2 2 2 Chitinase class I PG_binding_3 PF09374.10 AJD67060.1 - 0.0098 16.1 0.7 2.8 8.2 0.2 2.7 1 1 1 2 2 2 2 Predicted Peptidoglycan domain TRL PF13146.6 AJD67061.1 - 0.13 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 TRL-like protein family SAICAR_synt PF01259.18 AJD67064.1 - 4.1e-97 324.7 0.0 4.8e-97 324.5 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase DUF3006 PF11213.8 AJD67064.1 - 0.047 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) DnaJ PF00226.31 AJD67065.1 - 4e-13 49.3 0.4 5e-13 49.0 0.4 1.1 1 0 0 1 1 1 1 DnaJ domain CPP1-like PF11833.8 AJD67065.1 - 0.35 10.5 3.5 12 5.5 1.9 2.8 2 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF543 PF04418.12 AJD67065.1 - 7 6.7 5.8 2.2 8.3 2.9 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF543) OMP_b-brl PF13505.6 AJD67066.1 - 1.6e-14 54.4 17.0 8e-14 52.2 17.0 2.0 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain Ribul_P_3_epim PF00834.19 AJD67067.1 - 1.4e-90 302.0 0.0 1.7e-90 301.8 0.0 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 AJD67067.1 - 0.00018 21.4 0.0 0.029 14.2 0.0 2.2 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.21 AJD67067.1 - 0.023 14.2 0.0 0.059 12.8 0.0 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein Acetyltransf_1 PF00583.25 AJD67068.1 - 1.5e-20 73.6 0.0 2e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AJD67068.1 - 1.3e-09 38.3 0.1 2.1e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJD67068.1 - 2.3e-08 34.0 0.0 3e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD67068.1 - 1.5e-05 24.8 0.0 2.8e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 AJD67068.1 - 0.00027 21.6 0.0 0.00034 21.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 AJD67068.1 - 0.0013 18.9 2.6 0.0015 18.7 1.2 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AJD67068.1 - 0.028 14.5 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 AJD67068.1 - 0.046 13.9 0.0 0.061 13.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 AJD67068.1 - 0.1 12.3 0.0 1.1 9.0 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DAGK_cat PF00781.24 AJD67069.1 - 8.4e-26 90.0 0.1 1.3e-25 89.5 0.1 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 AJD67069.1 - 0.0094 15.2 0.1 0.014 14.6 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase Dynein_light PF01221.18 AJD67069.1 - 0.12 12.7 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Dynein light chain type 1 Chorismate_bind PF00425.18 AJD67070.1 - 1.7e-97 326.0 0.0 2.7e-97 325.3 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 AJD67070.1 - 3e-31 108.5 0.0 1.2e-29 103.3 0.0 2.5 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region Beta_elim_lyase PF01212.21 AJD67071.1 - 1e-29 103.8 1.2 1.3e-29 103.4 1.2 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 AJD67071.1 - 0.0018 17.5 0.2 0.003 16.8 0.2 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II GATase PF00117.28 AJD67072.1 - 9.7e-55 185.3 0.0 1.1e-54 185.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AJD67072.1 - 7.4e-12 45.5 0.1 1.3e-11 44.6 0.1 1.4 1 1 0 1 1 1 1 Peptidase C26 Glyco_transf_4 PF13439.6 AJD67072.1 - 0.066 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 MoCF_biosynth PF00994.24 AJD67072.1 - 0.08 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Probable molybdopterin binding domain Flavin_Reduct PF01613.18 AJD67073.1 - 1.3e-14 54.5 0.0 1.7e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Glycos_transf_3 PF00591.21 AJD67074.1 - 4.5e-92 308.2 2.2 6.9e-92 307.6 2.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 AJD67074.1 - 1.1e-13 50.8 2.1 2.7e-13 49.6 2.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PetN PF03742.14 AJD67074.1 - 0.043 13.7 1.0 0.12 12.3 1.0 1.8 1 0 0 1 1 1 0 PetN MLTR_LBD PF17765.1 AJD67074.1 - 0.072 13.2 3.2 2.3 8.3 0.1 3.4 4 0 0 4 4 4 0 MmyB-like transcription regulator ligand binding domain ImpA_N PF06812.12 AJD67074.1 - 0.17 12.0 0.0 0.45 10.6 0.0 1.6 2 0 0 2 2 2 0 ImpA, N-terminal, type VI secretion system IGPS PF00218.21 AJD67075.1 - 7e-95 317.0 0.0 7.9e-95 316.8 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 AJD67075.1 - 7.3e-05 22.6 0.1 0.00012 22.0 0.1 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain HAD PF12710.7 AJD67076.1 - 1.2e-25 91.0 0.2 1.4e-25 90.8 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD67076.1 - 1.5e-05 25.4 0.4 0.00075 19.9 0.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase cNMP_binding PF00027.29 AJD67077.1 - 6.2e-20 71.1 0.1 1.1e-19 70.2 0.1 1.5 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Crp PF00325.20 AJD67077.1 - 3e-14 52.4 0.6 1.3e-13 50.3 0.5 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.6 AJD67077.1 - 3.3e-11 43.0 0.2 7.2e-11 41.9 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 AJD67077.1 - 0.00088 19.1 0.3 0.0022 17.9 0.3 1.7 1 0 0 1 1 1 1 MarR family HemN_C PF06969.16 AJD67077.1 - 0.0039 17.2 0.6 3.5 7.8 0.1 2.9 2 1 0 2 2 2 2 HemN C-terminal domain SgrR_N PF12793.7 AJD67077.1 - 0.0063 16.7 0.2 0.017 15.3 0.0 1.8 2 0 0 2 2 2 1 Sugar transport-related sRNA regulator N-term MarR PF01047.22 AJD67077.1 - 0.018 14.9 0.0 0.052 13.5 0.0 1.8 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 AJD67077.1 - 0.026 14.9 0.0 0.062 13.7 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 AJD67077.1 - 0.028 14.3 0.2 0.091 12.7 0.0 2.0 2 0 0 2 2 2 0 HTH domain DUF3853 PF12964.7 AJD67077.1 - 0.032 14.4 0.0 0.064 13.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) HTH_23 PF13384.6 AJD67077.1 - 0.034 13.9 0.0 0.087 12.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.21 AJD67077.1 - 0.052 13.2 1.4 0.12 12.1 0.3 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 AJD67077.1 - 0.053 13.7 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AdoMet_dc PF02675.15 AJD67078.1 - 3.6e-31 107.6 0.1 6.8e-31 106.7 0.1 1.4 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PRE_C2HC PF07530.11 AJD67078.1 - 0.23 11.6 2.1 0.3 11.2 0.3 2.1 3 0 0 3 3 3 0 Associated with zinc fingers Multi_Drug_Res PF00893.19 AJD67079.1 - 9.3e-29 99.9 4.9 1.2e-28 99.6 4.9 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 AJD67079.1 - 0.088 13.0 11.3 0.13 12.4 11.3 1.2 1 1 0 1 1 1 0 EamA-like transporter family DUF5381 PF17353.2 AJD67079.1 - 2.1 8.1 4.2 13 5.5 0.1 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5381) COQ7 PF03232.13 AJD67080.1 - 2.9e-40 137.9 0.3 3.4e-40 137.6 0.3 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Rubrerythrin PF02915.17 AJD67080.1 - 0.021 15.2 0.0 0.034 14.5 0.0 1.3 1 0 0 1 1 1 0 Rubrerythrin Ferritin PF00210.24 AJD67080.1 - 0.038 13.9 0.7 0.1 12.5 0.7 1.7 1 1 0 1 1 1 0 Ferritin-like domain Ribosomal_L13 PF00572.18 AJD67081.1 - 2.8e-54 182.7 0.1 3.2e-54 182.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 AJD67082.1 - 7.7e-47 158.8 0.7 8.7e-47 158.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 NUDIX PF00293.28 AJD67083.1 - 3.2e-24 85.4 1.0 4.2e-24 85.0 1.0 1.1 1 0 0 1 1 1 1 NUDIX domain Ferritin PF00210.24 AJD67084.1 - 1.4e-38 132.0 3.7 1.6e-38 131.9 3.7 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF1241 PF06840.11 AJD67084.1 - 0.072 12.7 0.3 0.2 11.3 0.0 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1241) HATPase_c PF02518.26 AJD67085.1 - 1.6e-32 112.4 0.0 3e-32 111.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD67085.1 - 1.2e-26 93.0 0.0 1e-24 86.9 0.0 2.6 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 AJD67085.1 - 1.6e-16 60.1 0.2 1.6e-16 60.1 0.2 3.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 AJD67085.1 - 4e-11 43.0 2.1 4e-11 43.0 2.1 3.4 3 0 0 3 3 3 1 Hpt domain HATPase_c_3 PF13589.6 AJD67085.1 - 0.0072 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_holin_3_6 PF07332.11 AJD67085.1 - 1.7 8.7 9.6 0.74 9.9 6.4 2.1 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III EAL PF00563.20 AJD67086.1 - 1.8e-38 132.4 3.5 6.5e-37 127.3 3.0 2.3 2 0 0 2 2 2 2 EAL domain Response_reg PF00072.24 AJD67086.1 - 1.4e-22 79.9 0.0 3.1e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GGDEF PF00990.21 AJD67086.1 - 2e-07 30.9 0.0 3.9e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain DUF4126 PF13548.6 AJD67087.1 - 1.6e-43 148.4 22.0 2e-43 148.1 22.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4126) DUF4307 PF14155.6 AJD67088.1 - 0.041 13.7 0.7 0.078 12.8 0.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Bactofilin PF04519.13 AJD67089.1 - 6.7e-26 90.5 2.8 9e-26 90.0 2.8 1.1 1 0 0 1 1 1 1 Polymer-forming cytoskeletal DUF3672 PF12421.8 AJD67089.1 - 0.026 14.4 1.2 0.079 12.9 0.8 2.0 1 1 1 2 2 2 0 Fibronectin type III protein Fe-S_biosyn PF01521.20 AJD67090.1 - 3.9e-19 68.9 0.0 4.8e-19 68.6 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis LIP PF03583.14 AJD67091.1 - 1.5e-10 40.9 0.3 1.4e-07 31.1 0.3 2.1 2 0 0 2 2 2 2 Secretory lipase Hydrolase_4 PF12146.8 AJD67091.1 - 7.4e-06 25.4 0.1 5.3e-05 22.6 0.1 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD67091.1 - 1.3e-05 26.0 1.2 1.3e-05 26.0 1.2 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 AJD67091.1 - 5.9e-05 22.6 0.0 0.021 14.3 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 AJD67091.1 - 0.0012 18.5 0.1 0.0022 17.6 0.1 1.4 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DUF2974 PF11187.8 AJD67091.1 - 0.0019 17.8 0.1 0.0028 17.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Chlorophyllase2 PF12740.7 AJD67091.1 - 0.012 14.5 0.0 0.024 13.6 0.0 1.4 1 0 0 1 1 1 0 Chlorophyllase enzyme DLH PF01738.18 AJD67091.1 - 0.037 13.6 0.0 0.076 12.5 0.0 1.4 1 0 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 AJD67091.1 - 0.11 12.6 0.0 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 TAP-like protein Cutinase PF01083.22 AJD67091.1 - 0.12 12.3 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Cutinase DDE_Tnp_1 PF01609.21 AJD67092.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain NUDIX PF00293.28 AJD67093.1 - 5.6e-16 58.8 0.1 1.2e-15 57.7 0.1 1.5 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.11 AJD67093.1 - 1.1e-08 34.6 7.2 1.8e-08 33.9 7.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.11 AJD67093.1 - 6.3e-05 23.6 2.3 0.00026 21.6 2.5 1.9 2 0 0 2 2 2 1 NADH pyrophosphatase-like rudimentary NUDIX domain DUF1451 PF07295.11 AJD67093.1 - 0.027 14.5 1.6 0.043 13.9 1.6 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DZR PF12773.7 AJD67093.1 - 0.087 12.9 0.3 0.17 11.9 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 AJD67093.1 - 0.35 10.8 3.1 1.1 9.2 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain CobD_Cbib PF03186.13 AJD67094.1 - 4.7e-10 39.1 2.4 4.7e-10 39.1 2.4 2.2 2 1 0 2 2 2 1 CobD/Cbib protein AmpE PF17113.5 AJD67094.1 - 7.1e-05 22.3 12.7 0.00022 20.7 12.7 1.8 1 1 0 1 1 1 1 Regulatory signalling modulator protein AmpE DUF2752 PF10825.8 AJD67095.1 - 1.7e-18 66.4 8.0 4.6e-18 65.0 8.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2752) DUF1375 PF07119.12 AJD67095.1 - 0.036 14.4 0.1 0.084 13.3 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1375) CD225 PF04505.12 AJD67096.1 - 1.3e-20 73.2 1.9 1.9e-20 72.7 1.9 1.2 1 0 0 1 1 1 1 Interferon-induced transmembrane protein Claudin_2 PF13903.6 AJD67096.1 - 2.4e-05 24.2 0.4 2.7e-05 24.0 0.4 1.0 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction Acyltransferase PF01553.21 AJD67097.1 - 1.3e-24 86.4 0.0 2.5e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 Acyltransferase MFS_1 PF07690.16 AJD67097.1 - 7.3e-18 64.6 29.3 7.3e-18 64.6 29.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 AJD67097.1 - 2e-11 43.0 11.5 3.3e-11 42.3 11.5 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector LysR_substrate PF03466.20 AJD67098.1 - 6.2e-40 136.8 13.0 8.5e-40 136.4 13.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD67098.1 - 1.2e-20 73.3 2.3 1.2e-20 73.3 2.3 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_11 PF13531.6 AJD67098.1 - 0.00099 18.9 3.1 0.039 13.7 1.4 2.5 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.7 AJD67098.1 - 0.043 12.9 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 PBP superfamily domain MFS_1 PF07690.16 AJD67099.1 - 2.6e-30 105.6 58.8 1.3e-24 86.8 33.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AJD67099.1 - 0.27 10.5 43.1 0.84 8.9 43.1 1.9 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 AJD67099.1 - 8.9 4.5 11.8 0.057 11.7 1.6 2.5 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family FUSC-like PF12805.7 AJD67100.1 - 6e-104 347.1 23.0 8.1e-101 336.8 3.7 3.0 2 1 0 2 2 2 2 FUSC-like inner membrane protein yccS FUSC_2 PF13515.6 AJD67100.1 - 2.1e-24 86.0 35.4 5.7e-23 81.4 15.1 3.1 2 1 1 3 3 3 2 Fusaric acid resistance protein-like FUSC PF04632.12 AJD67100.1 - 3.8e-16 58.8 20.5 3.8e-16 58.8 20.5 3.3 2 1 0 2 2 2 1 Fusaric acid resistance protein family ALMT PF11744.8 AJD67100.1 - 0.00024 20.1 2.5 0.0046 15.9 2.5 2.4 1 1 0 1 1 1 1 Aluminium activated malate transporter GARS_A PF01071.19 AJD67101.1 - 9.1e-81 270.3 0.1 1.2e-80 269.9 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 AJD67101.1 - 1.3e-34 118.8 0.3 2.6e-34 117.8 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 AJD67101.1 - 1.7e-24 85.9 1.7 1.1e-23 83.3 0.1 2.6 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain CPSase_L_D2 PF02786.17 AJD67101.1 - 5.9e-05 22.7 0.1 0.00011 21.7 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 AJD67101.1 - 0.00046 19.8 0.0 0.00074 19.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 AJD67101.1 - 0.0016 18.5 0.0 0.0024 17.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 AJD67101.1 - 0.0035 16.9 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 AJD67101.1 - 0.036 13.5 0.1 0.064 12.7 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain AICARFT_IMPCHas PF01808.18 AJD67103.1 - 8.8e-112 373.3 1.9 1.1e-111 373.1 1.9 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 AJD67103.1 - 7.4e-25 87.0 0.0 2.2e-24 85.4 0.0 1.8 2 0 0 2 2 2 1 MGS-like domain CDP-OH_P_transf PF01066.21 AJD67104.1 - 2.4e-10 41.0 0.2 2.4e-10 41.0 0.2 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Methyltransf_20 PF12147.8 AJD67105.1 - 1.2e-152 507.4 0.0 1.5e-152 507.1 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Hydrolase_4 PF12146.8 AJD67105.1 - 1.6e-65 220.8 0.1 3.4e-65 219.7 0.1 1.5 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD67105.1 - 5.1e-05 23.0 0.1 8.5e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Methyltransf_23 PF13489.6 AJD67105.1 - 8.4e-05 22.5 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67105.1 - 0.00018 21.3 0.0 0.00027 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67105.1 - 0.00026 21.6 0.0 0.00073 20.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Abhydrolase_6 PF12697.7 AJD67105.1 - 0.14 12.7 32.8 0.049 14.2 24.8 2.9 1 1 1 2 2 2 0 Alpha/beta hydrolase family DUF3530 PF12048.8 AJD67105.1 - 0.19 11.1 0.8 0.28 10.6 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3530) DSPc PF00782.20 AJD67106.1 - 5.8e-09 35.9 0.0 8.8e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PAP2_3 PF14378.6 AJD67106.1 - 3.1e-06 27.0 12.5 3.1e-06 27.0 12.5 2.7 2 1 0 2 2 2 1 PAP2 superfamily Y_phosphatase PF00102.27 AJD67106.1 - 0.095 12.2 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein-tyrosine phosphatase DUF1275 PF06912.11 AJD67106.1 - 2.5 8.0 14.6 7.8 6.4 14.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1275) PAP2_C PF14360.6 AJD67106.1 - 7.3 7.2 13.6 0.11 13.1 5.4 2.3 3 0 0 3 3 3 0 PAP2 superfamily C-terminal DUF3280 PF11684.8 AJD67107.1 - 0.013 15.9 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) DUF554 PF04474.12 AJD67107.1 - 0.016 14.7 1.0 0.019 14.4 0.3 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF554) IMD PF08397.11 AJD67108.1 - 0.013 14.8 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 IRSp53/MIM homology domain DUF3054 PF11255.8 AJD67108.1 - 0.029 14.9 0.7 0.029 14.9 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3054) Phostensin_N PF13916.6 AJD67108.1 - 0.48 10.8 4.2 12 6.4 0.1 3.3 3 0 0 3 3 3 0 PP1-regulatory protein, Phostensin N-terminal CDP-OH_P_transf PF01066.21 AJD67109.1 - 4.2e-06 27.4 0.1 4.2e-06 27.4 0.1 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Wzy_C PF04932.15 AJD67109.1 - 0.81 9.3 11.5 0.11 12.1 1.9 2.7 3 0 0 3 3 3 0 O-Antigen ligase Acyltransferase PF01553.21 AJD67110.1 - 2.7e-14 52.9 0.0 3.5e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Acyltransferase CTP_transf_1 PF01148.20 AJD67111.1 - 1e-63 215.6 16.6 1e-63 215.6 16.6 1.4 2 0 0 2 2 2 1 Cytidylyltransferase family HTH_8 PF02954.19 AJD67112.1 - 2.6e-14 52.7 0.1 3.4e-14 52.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 AJD67112.1 - 1e-05 25.2 0.4 1.9e-05 24.3 0.1 1.6 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Phage_NinH PF06322.11 AJD67112.1 - 3.1e-05 23.8 0.1 0.0081 16.0 0.0 2.1 2 0 0 2 2 2 2 Phage NinH protein HTH_29 PF13551.6 AJD67112.1 - 0.0055 16.7 0.1 0.025 14.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 AJD67112.1 - 0.026 14.3 0.0 0.076 12.8 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 AJD67112.1 - 0.034 14.3 0.4 0.078 13.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2089 PF09862.9 AJD67112.1 - 0.08 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) UPF0175 PF03683.13 AJD67112.1 - 0.088 12.5 0.1 0.18 11.5 0.1 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) BrkDBD PF09607.10 AJD67112.1 - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Brinker DNA-binding domain DUF3426 PF11906.8 AJD67113.1 - 8.2e-35 120.1 0.2 1.4e-34 119.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3426) DUF4131 PF13567.6 AJD67113.1 - 0.014 15.1 3.7 0.2 11.3 3.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) HTH_3 PF01381.22 AJD67115.1 - 7.6e-09 35.5 0.1 1.2e-08 34.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AJD67115.1 - 2.4e-07 30.7 0.0 3.4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 AJD67115.1 - 1.8e-05 25.0 1.3 1.8e-05 25.0 1.3 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 AJD67115.1 - 0.00021 21.3 0.0 0.00033 20.7 0.0 1.2 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 AJD67115.1 - 0.0024 17.7 0.1 0.004 17.0 0.1 1.4 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 AJD67115.1 - 0.0031 17.2 1.4 0.019 14.8 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain P22_Cro PF14549.6 AJD67115.1 - 0.0035 17.2 0.1 0.0059 16.4 0.1 1.3 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro Sigma70_r4 PF04545.16 AJD67115.1 - 0.009 15.5 1.3 0.13 11.8 0.1 2.7 2 2 0 2 2 2 1 Sigma-70, region 4 DUF1323 PF07037.11 AJD67115.1 - 0.01 16.2 0.1 0.22 11.9 0.1 2.1 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_37 PF13744.6 AJD67115.1 - 0.01 15.7 0.0 0.025 14.6 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 AJD67115.1 - 0.049 13.6 0.3 0.079 12.9 0.3 1.3 1 0 0 1 1 1 0 HTH domain FA_desaturase PF00487.24 AJD67116.1 - 0.58 9.9 8.6 0.67 9.7 8.6 1.1 1 0 0 1 1 1 0 Fatty acid desaturase PrmA PF06325.13 AJD67117.1 - 1.2e-90 303.9 0.0 1.3e-90 303.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 AJD67117.1 - 7.6e-09 35.3 0.1 1.3e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 AJD67117.1 - 1.3e-08 34.9 0.0 2.3e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67117.1 - 3.9e-08 33.9 0.2 9.1e-08 32.7 0.2 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67117.1 - 1.9e-06 27.7 0.0 2.7e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67117.1 - 2.2e-05 25.1 0.1 5e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 AJD67117.1 - 0.00016 21.4 0.1 0.00044 19.9 0.1 1.7 1 1 1 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 AJD67117.1 - 0.00032 21.3 0.1 0.00083 20.0 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 AJD67117.1 - 0.00053 19.0 0.0 0.00073 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.19 AJD67117.1 - 0.0042 16.9 0.0 0.0061 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) T2SSL PF05134.13 AJD67117.1 - 0.017 14.4 0.4 0.089 12.1 0.4 1.9 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein L Met_10 PF02475.16 AJD67117.1 - 0.021 14.6 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.18 AJD67117.1 - 0.033 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Methyltransf_18 PF12847.7 AJD67117.1 - 0.044 13.7 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 AJD67117.1 - 0.077 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 AJD67117.1 - 0.12 12.4 0.2 0.33 10.9 0.2 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase CPSase_L_D2 PF02786.17 AJD67120.1 - 5.9e-82 274.3 0.1 8.6e-82 273.7 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 AJD67120.1 - 1.4e-44 151.1 0.1 3e-44 150.0 0.1 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 AJD67120.1 - 1.1e-40 138.1 0.0 2.2e-40 137.1 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 AJD67120.1 - 7.7e-11 41.9 0.0 2.6e-10 40.2 0.0 1.7 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 AJD67120.1 - 6.4e-08 32.8 0.0 1.1e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 AJD67120.1 - 1.7e-07 31.0 0.2 3.1e-07 30.1 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 AJD67120.1 - 0.024 14.2 0.0 0.14 11.8 0.0 2.1 2 1 1 3 3 3 0 ATP-grasp domain GARS_A PF01071.19 AJD67120.1 - 0.03 14.1 0.1 0.052 13.3 0.1 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 23S_rRNA_IVP PF05635.11 AJD67121.1 - 7.5e-28 96.9 0.0 9.6e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 23S rRNA-intervening sequence protein Biotin_lipoyl PF00364.22 AJD67122.1 - 8e-22 76.9 0.1 2.1e-21 75.5 0.0 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 AJD67122.1 - 6.5e-08 32.3 0.2 0.0064 16.3 0.1 2.6 3 0 0 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.19 AJD67122.1 - 0.00039 20.3 0.2 0.00085 19.2 0.1 1.6 2 0 0 2 2 2 1 Glycine cleavage H-protein RnfC_N PF13375.6 AJD67122.1 - 0.0043 17.0 0.0 0.0099 15.8 0.0 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DHquinase_II PF01220.19 AJD67123.1 - 2.3e-57 192.5 0.0 3.2e-57 192.1 0.0 1.2 1 0 0 1 1 1 1 Dehydroquinase class II DsbC PF11412.8 AJD67124.1 - 3.5e-68 227.2 0.0 1.7e-34 118.5 0.0 2.2 2 0 0 2 2 2 2 Disulphide bond corrector protein DsbC Thioredoxin_7 PF13899.6 AJD67124.1 - 1e-13 51.3 0.1 1.9e-13 50.4 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin-like DsbD PF02683.15 AJD67124.1 - 4.2e-11 43.1 14.2 7.7e-11 42.3 14.2 1.4 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.6 AJD67124.1 - 0.065 13.7 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin PF00085.20 AJD67124.1 - 0.21 11.6 0.0 0.37 10.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin CutA1 PF03091.15 AJD67125.1 - 8.6e-32 108.9 0.0 9.7e-32 108.8 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Arabinose_bd PF12625.7 AJD67126.1 - 4.9e-32 111.5 8.3 4.9e-32 111.5 8.3 1.6 2 0 0 2 2 2 1 Arabinose-binding domain of AraC transcription regulator, N-term HTH_18 PF12833.7 AJD67126.1 - 1.5e-16 60.4 1.9 2.8e-16 59.6 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD67126.1 - 2.4e-06 27.5 0.0 0.0018 18.3 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_8 PF02954.19 AJD67126.1 - 0.00065 19.4 0.4 0.0018 18.0 0.4 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 AJD67126.1 - 0.00081 19.1 0.1 0.0021 17.8 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 AJD67126.1 - 0.00097 18.5 0.2 0.0029 17.0 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 AJD67126.1 - 0.015 15.4 0.1 0.037 14.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 AJD67126.1 - 0.019 15.2 0.0 0.063 13.5 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD67126.1 - 0.045 13.6 0.0 0.2 11.5 0.0 2.1 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF3856 PF12968.7 AJD67126.1 - 0.16 12.0 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) START PF01852.19 AJD67128.1 - 3.9e-11 42.8 0.0 4.7e-11 42.5 0.0 1.0 1 0 0 1 1 1 1 START domain Polyketide_cyc2 PF10604.9 AJD67128.1 - 1.4e-08 35.1 0.8 2.7e-08 34.2 0.8 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 AJD67128.1 - 0.00028 21.1 0.2 0.00078 19.7 0.2 1.8 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Filamin PF00630.19 AJD67128.1 - 0.16 12.8 0.0 0.43 11.4 0.0 1.6 2 0 0 2 2 2 0 Filamin/ABP280 repeat DUF373 PF04123.13 AJD67129.1 - 0.031 13.7 0.9 0.031 13.7 0.9 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF373) NADH-u_ox-rdase PF10785.9 AJD67129.1 - 0.1 13.3 0.1 0.25 12.1 0.0 1.7 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF3040 PF11239.8 AJD67129.1 - 4.5 7.6 11.4 13 6.2 3.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) adh_short PF00106.25 AJD67130.1 - 9.3e-49 165.5 0.4 1.5e-48 164.8 0.1 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD67130.1 - 1.8e-35 122.6 0.1 2.8e-35 122.0 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.6 AJD67130.1 - 5.1e-07 29.8 0.0 7.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 AJD67130.1 - 1.8e-05 24.7 0.2 3.1e-05 24.0 0.2 1.3 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 AJD67130.1 - 6.9e-05 22.4 0.0 0.00021 20.8 0.0 1.7 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 AJD67130.1 - 0.00051 19.6 0.2 0.0054 16.2 0.1 2.2 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 AJD67130.1 - 0.011 15.7 0.1 0.052 13.6 0.1 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 AJD67130.1 - 0.014 16.0 0.0 0.031 14.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 AJD67130.1 - 0.028 14.6 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_2 PF13477.6 AJD67130.1 - 0.085 12.9 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase 4-like Endonuclease_1 PF04231.13 AJD67131.1 - 1.8e-37 129.3 0.0 2.9e-37 128.6 0.0 1.3 1 0 0 1 1 1 1 Endonuclease I Big_5 PF13205.6 AJD67131.1 - 2.7e-14 53.8 0.4 8.1e-14 52.2 0.4 1.9 1 0 0 1 1 1 1 Bacterial Ig-like domain LTD PF00932.19 AJD67131.1 - 6.4e-09 36.2 0.2 2.1e-08 34.5 0.2 1.9 1 0 0 1 1 1 1 Lamin Tail Domain Cpn10 PF00166.21 AJD67132.1 - 8.1e-32 109.1 1.2 9e-32 109.0 1.2 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit RnfC_N PF13375.6 AJD67132.1 - 0.015 15.2 0.3 0.035 14.1 0.3 1.7 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Cpn60_TCP1 PF00118.24 AJD67133.1 - 4.8e-97 325.6 18.8 7.3e-97 325.0 18.8 1.3 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phage_GP20 PF06810.11 AJD67133.1 - 0.73 9.6 5.2 0.12 12.2 0.8 2.0 2 0 0 2 2 2 0 Phage minor structural protein GP20 Baculo_PEP_C PF04513.12 AJD67134.1 - 0.064 13.3 1.8 0.45 10.5 0.5 2.6 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5539 PF17693.1 AJD67134.1 - 0.35 10.5 8.4 0.13 11.9 5.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5539) DUF1993 PF09351.10 AJD67134.1 - 0.46 10.6 2.0 6.1 7.0 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1993) TonB_dep_Rec PF00593.24 AJD67135.1 - 1.2e-37 130.9 36.1 1.2e-37 130.9 36.1 2.2 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD67135.1 - 9.6e-22 77.6 1.6 2.8e-21 76.1 1.6 1.9 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain DAHP_synth_1 PF00793.20 AJD67136.1 - 2.2e-100 335.1 0.0 2.7e-100 334.8 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family SGL PF08450.12 AJD67139.1 - 2.5e-44 151.7 0.0 3e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Str_synth PF03088.16 AJD67139.1 - 0.031 14.4 0.0 5.2 7.3 0.0 2.7 3 0 0 3 3 3 0 Strictosidine synthase Arylesterase PF01731.20 AJD67139.1 - 0.18 12.0 0.0 0.88 9.8 0.0 1.9 2 0 0 2 2 2 0 Arylesterase Cupin_2 PF07883.11 AJD67140.1 - 0.0092 15.7 0.2 0.014 15.1 0.2 1.4 1 0 0 1 1 1 1 Cupin domain GlnE PF03710.15 AJD67141.1 - 7e-128 425.3 11.5 1.7e-67 227.5 0.8 3.7 2 2 1 3 3 3 2 Glutamate-ammonia ligase adenylyltransferase GlnD_UR_UTase PF08335.11 AJD67141.1 - 4.2e-50 169.6 8.0 2.2e-42 144.6 2.5 3.0 3 0 0 3 3 3 2 GlnD PII-uridylyltransferase DUF294_C PF10335.9 AJD67141.1 - 0.00069 19.4 3.7 0.031 14.1 0.4 2.7 2 0 0 2 2 2 2 Putative nucleotidyltransferase substrate binding domain Arg_decarbox_C PF17944.1 AJD67141.1 - 0.31 11.6 2.6 14 6.3 0.1 3.7 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension Vut_1 PF02592.15 AJD67142.1 - 4e-27 95.4 8.4 2.4e-17 63.6 1.9 2.9 2 1 1 3 3 3 2 Putative vitamin uptake transporter Pro-kuma_activ PF09286.11 AJD67143.1 - 3.2e-18 66.4 0.0 5.6e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 AJD67143.1 - 1.4e-05 24.6 0.1 5.3e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 Subtilase family Mito_fiss_Elm1 PF06258.11 AJD67144.1 - 6.6e-75 252.1 0.0 7.5e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial fission ELM1 Nitroreductase PF00881.24 AJD67145.1 - 4.9e-16 59.3 0.0 1.1e-15 58.1 0.0 1.6 1 1 0 1 1 1 1 Nitroreductase family YceI PF04264.13 AJD67146.1 - 3.6e-44 150.8 1.7 4.5e-44 150.5 1.7 1.1 1 0 0 1 1 1 1 YceI-like domain TamB PF04357.13 AJD67146.1 - 0.082 12.1 0.4 1 8.5 0.2 2.0 1 1 1 2 2 2 0 TamB, inner membrane protein subunit of TAM complex DUF3597 PF12200.8 AJD67146.1 - 1.3 9.5 6.5 3.2 8.3 6.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3597) His_Phos_2 PF00328.22 AJD67147.1 - 7.2e-12 45.3 0.1 3.7e-07 29.8 0.8 3.0 2 1 0 2 2 2 2 Histidine phosphatase superfamily (branch 2) FAD_binding_9 PF08021.11 AJD67148.1 - 4.1e-38 130.3 0.0 7.6e-38 129.4 0.0 1.4 1 0 0 1 1 1 1 Siderophore-interacting FAD-binding domain SIP PF04954.13 AJD67148.1 - 4.3e-35 120.8 0.9 6.3e-35 120.3 0.9 1.2 1 0 0 1 1 1 1 Siderophore-interacting protein PadR PF03551.14 AJD67149.1 - 6e-18 64.6 0.0 9.3e-18 64.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 AJD67149.1 - 0.0002 21.8 0.0 0.00071 20.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain RTP PF02334.16 AJD67149.1 - 0.0026 18.4 0.0 0.0061 17.2 0.0 1.6 1 1 0 1 1 1 1 Replication terminator protein Replic_Relax PF13814.6 AJD67149.1 - 0.0088 16.1 1.1 0.011 15.8 1.1 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_34 PF13601.6 AJD67149.1 - 0.11 12.7 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Stork_head PF10264.9 AJD67149.1 - 0.15 12.2 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix Storkhead-box1 domain Mal_decarbox_Al PF16957.5 AJD67150.1 - 8.5e-303 1004.7 0.0 9.6e-303 1004.5 0.0 1.0 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter nlz1 PF12402.8 AJD67150.1 - 0.14 12.6 0.0 0.34 11.4 0.0 1.6 1 0 0 1 1 1 0 NocA-like zinc-finger protein 1 ACP PF06857.11 AJD67151.1 - 2.5e-24 85.3 0.1 2.8e-24 85.1 0.1 1.1 1 0 0 1 1 1 1 Malonate decarboxylase delta subunit (MdcD) Carboxyl_trans PF01039.22 AJD67152.1 - 1.1e-18 67.1 0.1 1.5e-18 66.7 0.1 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 AJD67153.1 - 6.8e-90 300.6 8.8 7.7e-90 300.4 8.8 1.0 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) Carboxyl_trans PF01039.22 AJD67153.1 - 0.00035 19.3 0.1 0.00045 19.0 0.1 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcG PF10620.9 AJD67154.1 - 6.3e-60 202.4 12.3 7.1e-60 202.2 12.3 1.0 1 0 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG CitG PF01874.16 AJD67155.1 - 2e-82 277.0 5.8 2.4e-82 276.8 5.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Acyl_transf_1 PF00698.21 AJD67157.1 - 2.7e-22 79.7 5.6 3.5e-22 79.3 5.6 1.1 1 0 0 1 1 1 1 Acyl transferase domain SAT PF16073.5 AJD67157.1 - 0.0033 17.2 4.6 0.049 13.3 4.1 2.3 1 1 0 2 2 2 1 Starter unit:ACP transacylase in aflatoxin biosynthesis COPI_C PF06957.11 AJD67157.1 - 0.0077 15.0 0.0 0.012 14.4 0.0 1.2 1 0 0 1 1 1 1 Coatomer (COPI) alpha subunit C-terminus MatC_N PF07158.11 AJD67158.1 - 6.9e-69 230.6 14.6 6.9e-69 230.6 14.6 2.7 3 0 0 3 3 3 1 Dicarboxylate carrier protein MatC N-terminus CitMHS PF03600.16 AJD67158.1 - 3e-28 98.9 71.5 1.2e-21 77.2 45.2 2.1 1 1 1 2 2 2 2 Citrate transporter FCD PF07729.12 AJD67159.1 - 4.1e-28 98.3 6.1 7.5e-28 97.5 6.1 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AJD67159.1 - 9.5e-18 63.6 0.1 1.8e-17 62.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AJD67159.1 - 0.0023 17.4 0.0 0.0052 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 AJD67159.1 - 0.016 15.2 0.1 0.057 13.4 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_29 PF13551.6 AJD67159.1 - 0.037 14.1 1.4 0.42 10.7 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn helix Rrf2 PF02082.20 AJD67159.1 - 0.05 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 AJD67159.1 - 0.072 13.1 0.2 0.19 11.7 0.2 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 AJD67159.1 - 0.076 12.9 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_41 PF14502.6 AJD67159.1 - 0.14 11.8 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HAD_2 PF13419.6 AJD67160.1 - 5.1e-22 78.8 0.0 6.1e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 AJD67160.1 - 3e-12 47.3 1.2 5e-12 46.6 1.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD67160.1 - 2.3e-10 41.1 1.8 1.4e-08 35.3 1.8 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD67160.1 - 0.00017 21.6 0.1 0.00034 20.6 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 AJD67160.1 - 0.043 13.9 0.0 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AJD67160.1 - 0.053 13.3 0.0 5.7 6.6 0.0 2.6 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Flg_bb_rod PF00460.20 AJD67160.1 - 0.16 11.9 0.1 0.32 11.0 0.1 1.5 1 0 0 1 1 1 0 Flagella basal body rod protein STAS PF01740.21 AJD67161.1 - 5.4e-12 45.4 0.0 1e-11 44.5 0.0 1.4 1 1 0 1 1 1 1 STAS domain STAS_2 PF13466.6 AJD67161.1 - 1.1e-10 41.7 0.0 1.8e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 STAS domain HATPase_c_2 PF13581.6 AJD67162.1 - 8.1e-22 77.5 0.0 9.1e-22 77.3 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SpoIIE PF07228.12 AJD67163.1 - 9.5e-46 156.2 1.1 1.1e-45 155.9 0.0 1.7 2 0 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 AJD67163.1 - 3.1e-21 76.3 0.0 4.2e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 AJD67163.1 - 2.2e-12 47.2 2.3 3.5e-12 46.5 0.1 2.6 2 0 0 2 2 2 1 HAMP domain SNARE_assoc PF09335.11 AJD67163.1 - 0.17 12.4 0.2 0.17 12.4 0.2 2.4 3 0 0 3 3 3 0 SNARE associated Golgi protein NADH_B2 PF14813.6 AJD67163.1 - 0.8 9.5 6.2 12 5.8 6.2 2.4 1 1 0 1 1 1 0 NADH dehydrogenase 1 beta subcomplex subunit 2 Lipase_3 PF01764.25 AJD67165.1 - 9.7e-07 28.7 1.2 3.9e-06 26.8 0.9 2.1 2 1 0 2 2 2 1 Lipase (class 3) DUF2974 PF11187.8 AJD67165.1 - 5.7e-06 26.0 0.1 9.4e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Abhydrolase_5 PF12695.7 AJD67165.1 - 0.018 14.8 0.1 0.059 13.1 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase family Thioesterase PF00975.20 AJD67165.1 - 0.038 14.1 0.0 0.038 14.1 0.0 2.0 2 0 0 2 2 2 0 Thioesterase domain DLH PF01738.18 AJD67165.1 - 0.046 13.3 0.1 0.079 12.5 0.1 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 AJD67165.1 - 2.5 8.7 9.8 0.25 11.9 3.1 2.2 1 1 1 2 2 2 0 Alpha/beta hydrolase family Glyco_hydro_53 PF07745.13 AJD67166.1 - 7.8e-102 340.7 6.5 4.2e-100 335.1 6.5 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 53 PDH_E1_M PF17831.1 AJD67167.1 - 1e-100 336.0 0.6 1.5e-100 335.5 0.6 1.2 1 0 0 1 1 1 1 Pyruvate dehydrogenase E1 component middle domain Transketolase_N PF00456.21 AJD67167.1 - 1.4e-12 47.3 0.0 1.4e-07 30.8 0.0 2.5 2 0 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain Transketolase_C PF02780.20 AJD67167.1 - 0.0013 18.6 0.0 0.0039 17.0 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain XFP_C PF09363.10 AJD67167.1 - 0.054 13.0 0.0 6 6.3 0.0 2.4 2 0 0 2 2 2 0 XFP C-terminal domain rve PF00665.26 AJD67168.1 - 2.7e-32 111.5 0.3 5e-32 110.6 0.1 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD67168.1 - 1.1e-14 54.3 1.9 3.3e-14 52.7 1.9 1.8 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD67168.1 - 2.4e-12 46.8 0.1 4.4e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD67168.1 - 2.2e-10 40.1 0.0 1.2e-09 37.8 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD67168.1 - 2.5e-05 24.5 0.0 3.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AJD67168.1 - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease HTH_Tnp_1 PF01527.20 AJD67169.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD67169.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD67169.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD67169.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD67169.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD67169.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD67169.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD67169.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD67169.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD67169.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD67169.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD67169.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD67169.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD67169.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD67169.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD67169.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD67169.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD67169.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD67169.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD67169.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD67169.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein adh_short PF00106.25 AJD67170.1 - 1e-51 175.2 1.0 1.3e-51 174.8 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD67170.1 - 8.8e-38 130.2 1.6 1.1e-37 129.8 1.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD67170.1 - 1.3e-08 35.0 2.0 3.3e-08 33.6 1.7 1.6 1 1 1 2 2 2 1 KR domain IlvN PF07991.12 AJD67170.1 - 0.00076 19.1 0.9 0.0014 18.2 0.4 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 AJD67170.1 - 0.028 14.5 0.1 0.042 13.9 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cupin_6 PF12852.7 AJD67171.1 - 2.2e-32 112.3 1.7 3.3e-32 111.7 1.7 1.3 1 0 0 1 1 1 1 Cupin HTH_18 PF12833.7 AJD67171.1 - 4.3e-21 75.0 2.7 5e-21 74.8 1.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD67171.1 - 3.4e-16 58.9 0.0 4.8e-08 32.9 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.23 AJD67171.1 - 1.6e-05 24.6 1.4 0.005 16.6 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.6 AJD67171.1 - 0.077 12.8 0.2 0.64 9.9 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AJD67171.1 - 0.1 12.2 0.0 0.54 9.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 AJD67171.1 - 0.13 12.1 1.5 2.7 7.9 0.0 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain MarR_2 PF12802.7 AJD67171.1 - 0.15 12.0 1.0 2.3 8.2 0.0 2.9 3 0 0 3 3 3 0 MarR family HTH_31 PF13560.6 AJD67171.1 - 0.95 9.9 5.3 4 7.9 0.1 3.1 4 0 0 4 4 4 0 Helix-turn-helix domain DUF411 PF04214.13 AJD67172.1 - 0.13 12.2 0.1 1.1 9.2 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF adh_short_C2 PF13561.6 AJD67173.1 - 3.3e-14 53.0 0.0 3.1e-08 33.4 0.0 2.2 2 0 0 2 2 2 2 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67173.1 - 8.2e-14 51.5 0.0 5.9e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 AJD67173.1 - 0.043 13.7 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 KR domain Spt4 PF06093.13 AJD67173.1 - 0.2 11.8 0.3 0.42 10.7 0.3 1.5 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Band_7 PF01145.25 AJD67174.1 - 1.2e-18 67.8 2.3 1.8e-18 67.2 2.3 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family BsuBI_PstI_RE_N PF17728.1 AJD67174.1 - 0.074 12.9 1.0 0.64 9.9 0.1 2.1 2 0 0 2 2 2 0 BsuBI/PstI restriction endonuclease HTH domain DUF2255 PF10012.9 AJD67174.1 - 0.23 11.6 3.0 11 6.2 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2255) LTXXQ PF07813.12 AJD67174.1 - 0.25 12.1 12.0 0.15 12.8 8.8 1.9 2 0 0 2 2 2 0 LTXXQ motif family protein GST_N_2 PF13409.6 AJD67175.1 - 5.9e-23 81.0 0.0 5e-22 78.0 0.0 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD67175.1 - 1.5e-13 50.6 0.3 1.5e-13 50.6 0.3 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD67175.1 - 2.2e-07 31.0 0.0 4.1e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AJD67175.1 - 5e-05 23.4 0.0 0.00011 22.4 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 AJD67175.1 - 5.2e-05 23.6 0.0 0.00084 19.7 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 AJD67175.1 - 0.059 13.2 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Glyoxalase PF00903.25 AJD67176.1 - 5.1e-09 36.4 0.0 1.3e-08 35.1 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD67176.1 - 6.2e-05 23.7 0.1 0.00018 22.2 0.0 1.9 2 1 0 2 2 2 1 Glyoxalase-like domain DUF4126 PF13548.6 AJD67177.1 - 1.4e-06 28.1 9.7 1.7e-06 27.9 9.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4126) Mg_trans_NIPA PF05653.14 AJD67177.1 - 0.14 11.3 1.6 0.14 11.3 1.6 1.1 1 0 0 1 1 1 0 Magnesium transporter NIPA DEC-1_N PF04625.13 AJD67178.1 - 0.0077 15.3 2.5 0.0076 15.3 2.5 1.1 1 0 0 1 1 1 1 DEC-1 protein, N-terminal region Peptidase_C92 PF05708.12 AJD67179.1 - 2.5e-36 125.3 0.0 2.8e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DUF3817 PF12823.7 AJD67180.1 - 1.5e-17 64.2 8.2 1.7e-17 64.0 8.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3817) DPPIV_N PF00930.21 AJD67181.1 - 2.4e-69 233.8 0.3 1.2e-68 231.5 0.1 1.9 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9 PF00326.21 AJD67181.1 - 4.6e-47 160.2 0.9 7.1e-47 159.6 0.9 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Esterase PF00756.20 AJD67181.1 - 4e-05 23.4 1.0 7.1e-05 22.6 0.1 1.9 2 1 0 2 2 2 1 Putative esterase PD40 PF07676.12 AJD67181.1 - 5.3e-05 23.1 1.1 1.6 8.8 0.1 3.7 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat PQQ PF01011.21 AJD67181.1 - 0.0062 16.4 1.0 0.47 10.5 0.0 3.8 4 0 0 4 4 4 1 PQQ enzyme repeat Hydrolase_4 PF12146.8 AJD67181.1 - 0.043 13.1 0.9 0.16 11.2 0.1 2.3 3 0 0 3 3 3 0 Serine aminopeptidase, S33 DLH PF01738.18 AJD67181.1 - 0.14 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Dienelactone hydrolase family DUF1615 PF07759.12 AJD67182.1 - 1.7e-137 457.9 0.0 1.9e-137 457.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1615) GGDEF PF00990.21 AJD67183.1 - 1.1e-37 129.3 0.0 3.3e-37 127.7 0.0 1.9 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain LPG_synthase_TM PF03706.13 AJD67183.1 - 0.008 15.8 1.5 0.02 14.4 1.5 1.6 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF4205 PF13898.6 AJD67183.1 - 0.11 11.4 0.4 0.21 10.5 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4205) TPR_1 PF00515.28 AJD67183.1 - 0.58 10.1 4.3 11 6.1 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat LapA_dom PF06305.11 AJD67183.1 - 1.7 8.5 4.0 6.1 6.7 4.0 2.0 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain TPR_2 PF07719.17 AJD67183.1 - 6.8 7.1 16.4 6.2 7.2 1.8 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat Methyltransf_30 PF05430.11 AJD67186.1 - 0.00012 21.9 0.0 0.00023 21.1 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 AJD67186.1 - 0.013 15.0 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Spermine_synth PF01564.17 AJD67186.1 - 0.095 12.1 0.0 0.74 9.2 0.0 1.9 2 0 0 2 2 2 0 Spermine/spermidine synthase domain Methyltransf_11 PF08241.12 AJD67186.1 - 0.14 12.8 0.0 0.39 11.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain EamA PF00892.20 AJD67187.1 - 7.3e-22 78.0 30.5 7.4e-14 52.1 10.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family Sugar_transport PF06800.12 AJD67187.1 - 6.9e-05 22.3 1.5 6.9e-05 22.3 1.5 2.1 2 0 0 2 2 2 1 Sugar transport protein TPT PF03151.16 AJD67187.1 - 0.004 16.6 5.7 0.011 15.1 5.7 1.9 1 1 0 1 1 1 1 Triose-phosphate Transporter family Nuc_sug_transp PF04142.15 AJD67187.1 - 0.031 13.4 0.5 0.048 12.8 0.5 1.3 1 0 0 1 1 1 0 Nucleotide-sugar transporter SLC35F PF06027.12 AJD67187.1 - 0.049 13.1 9.1 0.042 13.4 3.2 2.2 2 0 0 2 2 2 0 Solute carrier family 35 Multi_Drug_Res PF00893.19 AJD67187.1 - 1.5 9.6 14.5 2.1 9.1 1.4 3.2 1 1 3 4 4 4 0 Small Multidrug Resistance protein SBP_bac_3 PF00497.20 AJD67188.1 - 2.7e-38 131.7 0.0 3.1e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 AJD67188.1 - 0.0014 18.8 0.0 0.14 12.4 0.0 2.7 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site GerPB PF10803.8 AJD67188.1 - 0.15 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Spore germination GerPB AA_permease PF00324.21 AJD67191.1 - 3.9e-114 381.9 42.2 4.3e-114 381.7 42.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 AJD67191.1 - 6.5e-45 153.7 47.6 8e-45 153.4 47.6 1.0 1 0 0 1 1 1 1 Amino acid permease Cadherin_C_2 PF16492.5 AJD67191.1 - 1.6 9.5 5.6 7.7 7.3 0.0 3.3 3 0 0 3 3 3 0 Cadherin cytoplasmic C-terminal Prominin PF05478.11 AJD67191.1 - 2.1 6.2 4.3 3.8 5.3 4.3 1.4 1 0 0 1 1 1 0 Prominin CTD PF12815.7 AJD67192.1 - 0.47 11.0 3.8 3.3 8.3 0.0 3.5 3 1 0 3 3 3 0 Spt5 C-terminal nonapeptide repeat binding Spt4 CorA PF01544.18 AJD67193.1 - 3.1e-54 184.3 0.0 3.8e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Raco_middle PF17651.1 AJD67193.1 - 0.15 11.7 0.0 0.4 10.4 0.0 1.5 2 0 0 2 2 2 0 RACo middle region AIM24 PF01987.17 AJD67194.1 - 9.9e-33 113.6 1.3 1.2e-32 113.3 1.3 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Trehalase PF01204.18 AJD67195.1 - 9.3e-169 562.5 0.0 1.1e-168 562.3 0.0 1.0 1 0 0 1 1 1 1 Trehalase DUF72 PF01904.18 AJD67196.1 - 9.8e-50 169.7 0.1 1.2e-49 169.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 NCOA_u2 PF16665.5 AJD67196.1 - 0.073 13.4 0.1 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 Unstructured region on nuclear receptor coactivator protein DUF2333 PF10095.9 AJD67196.1 - 0.076 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2333) H2TH PF06831.14 AJD67197.1 - 5.5e-10 39.1 0.0 9.7e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Fapy_DNA_glyco PF01149.24 AJD67197.1 - 1.6e-07 31.9 0.0 3.6e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain zf-FPG_IleRS PF06827.14 AJD67197.1 - 0.0072 16.2 0.4 0.029 14.2 0.4 2.1 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DUF3995 PF13160.6 AJD67198.1 - 0.25 11.7 0.1 0.25 11.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) GAF PF01590.26 AJD67199.1 - 1.6e-07 32.0 1.2 2.7e-07 31.3 0.4 1.8 2 1 0 2 2 2 1 GAF domain GAF_2 PF13185.6 AJD67199.1 - 4e-05 23.9 0.3 9.5e-05 22.7 0.1 1.7 2 0 0 2 2 2 1 GAF domain Peptidase_M16_C PF05193.21 AJD67201.1 - 1.2e-61 208.0 0.0 2.5e-29 102.6 0.0 3.3 3 0 0 3 3 3 2 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 AJD67201.1 - 1e-23 84.0 0.0 6.9e-15 55.3 0.0 2.3 2 0 0 2 2 2 2 Insulinase (Peptidase family M16) PAS_4 PF08448.10 AJD67202.1 - 8.3e-41 138.7 11.7 2.1e-12 47.3 0.7 5.0 4 1 0 4 4 4 4 PAS fold GGDEF PF00990.21 AJD67202.1 - 6.1e-40 136.6 0.0 1.2e-39 135.6 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 AJD67202.1 - 2.3e-29 101.7 0.0 3.7e-07 30.3 0.0 4.6 4 1 0 4 4 4 4 PAS domain PAS PF00989.25 AJD67202.1 - 1.9e-28 98.7 0.0 1.3e-10 41.2 0.0 5.6 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.7 AJD67202.1 - 1e-21 76.4 0.6 2.4e-06 27.4 0.0 4.9 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 AJD67202.1 - 1.3e-20 73.4 0.0 1.7e-12 47.4 0.0 3.6 3 0 0 3 3 3 3 PAS fold GAF PF01590.26 AJD67202.1 - 7.2e-08 33.1 0.2 5.5e-07 30.3 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.6 AJD67202.1 - 0.00047 20.3 0.0 0.0084 16.2 0.0 2.5 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 AJD67202.1 - 0.014 15.8 0.1 0.057 13.8 0.0 2.1 2 0 0 2 2 2 0 GAF domain MCPsignal PF00015.21 AJD67203.1 - 3e-52 176.9 21.6 3e-52 176.9 21.6 4.1 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_2 PF17200.4 AJD67203.1 - 7.5e-38 129.8 0.3 7.5e-38 129.8 0.3 3.1 3 1 1 4 4 4 1 Single Cache domain 2 dCache_2 PF08269.11 AJD67203.1 - 5.1e-33 114.5 1.8 9.5e-32 110.3 0.0 2.5 2 1 0 2 2 2 1 Cache domain HAMP_N3 PF18575.1 AJD67203.1 - 8.3e-16 57.3 1.0 7.2e-13 47.9 0.0 4.7 6 0 0 6 6 6 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD67203.1 - 3.5e-14 52.9 24.6 3e-10 40.3 1.6 7.3 7 1 0 7 7 7 3 HAMP domain Cache_3-Cache_2 PF17201.4 AJD67203.1 - 1.3e-10 41.1 0.0 1.3e-10 41.1 0.0 3.6 5 1 0 5 5 5 1 Cache 3/Cache 2 fusion domain PMC2NT PF08066.12 AJD67203.1 - 0.059 14.1 5.0 2.9 8.7 0.0 4.2 4 1 0 4 4 4 0 PMC2NT (NUC016) domain Sigma70_ner PF04546.13 AJD67203.1 - 0.087 12.7 9.2 0.11 12.4 3.6 2.7 2 0 0 2 2 2 0 Sigma-70, non-essential region DUF948 PF06103.11 AJD67203.1 - 0.088 13.1 29.1 7.9 6.8 0.0 6.9 5 2 0 5 5 5 0 Bacterial protein of unknown function (DUF948) LON_substr_bdg PF02190.16 AJD67203.1 - 0.11 12.4 0.4 0.76 9.6 0.1 2.2 1 1 0 2 2 2 0 ATP-dependent protease La (LON) substrate-binding domain DUF4854 PF16146.5 AJD67203.1 - 0.45 10.9 0.1 0.45 10.9 0.1 4.2 4 1 1 5 5 5 0 Domain of unknown function (DUF4854) Mod_r PF07200.13 AJD67203.1 - 1.4 9.0 12.8 0.92 9.6 0.2 3.8 4 0 0 4 4 4 0 Modifier of rudimentary (Mod(r)) protein CCDC144C PF14915.6 AJD67203.1 - 2.4 7.2 8.4 1.7 7.7 0.0 2.6 3 0 0 3 3 3 0 CCDC144C protein coiled-coil region Prominin PF05478.11 AJD67203.1 - 3.1 5.6 12.6 0.034 12.1 0.4 2.7 2 1 1 3 3 3 0 Prominin RPW8 PF05659.11 AJD67203.1 - 3.1 7.5 5.8 4.4 7.0 0.2 3.4 4 0 0 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Cellulase PF00150.18 AJD67204.1 - 4.3e-58 197.0 0.1 6.2e-58 196.5 0.1 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) CBM_2 PF00553.19 AJD67204.1 - 5.8e-16 58.7 8.5 5.8e-16 58.7 8.5 2.0 2 0 0 2 2 2 1 Cellulose binding domain Glyco_hydro_42 PF02449.15 AJD67204.1 - 0.018 14.4 0.0 2 7.6 0.0 2.2 1 1 1 2 2 2 0 Beta-galactosidase DUF3954 PF13128.6 AJD67204.1 - 0.56 10.1 5.5 0.11 12.3 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) TALPID3 PF15324.6 AJD67204.1 - 3.6 5.1 3.2 4.9 4.7 3.2 1.0 1 0 0 1 1 1 0 Hedgehog signalling target PLRV_ORF5 PF01690.17 AJD67204.1 - 6.9 5.3 7.2 11 4.6 7.2 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Sulfate_transp PF00916.20 AJD67205.1 - 7.2e-46 156.7 31.3 1.1e-26 93.5 4.0 2.3 1 1 1 2 2 2 2 Sulfate permease family STAS PF01740.21 AJD67205.1 - 1.3e-07 31.2 0.0 2.4e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 AJD67205.1 - 1.1e-05 25.7 1.6 3e-05 24.3 1.6 1.8 1 0 0 1 1 1 1 STAS domain GGDEF PF00990.21 AJD67206.1 - 3.6e-35 121.1 0.1 5.1e-35 120.6 0.1 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AJD67206.1 - 0.081 13.2 0.7 0.24 11.7 0.1 2.1 1 1 0 2 2 2 0 GGDEF-like domain Peptidase_M28 PF04389.17 AJD67207.1 - 3.3e-49 167.3 0.0 6e-49 166.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 AJD67207.1 - 2.2e-08 34.0 0.1 5.6e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 AJD67207.1 - 0.00041 20.1 0.0 0.0015 18.3 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 AJD67207.1 - 0.0013 17.9 0.0 0.018 14.0 0.0 2.1 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase GP70 PF17429.2 AJD67208.1 - 0.18 11.7 0.1 0.39 10.6 0.1 1.5 1 0 0 1 1 1 0 Gene product 70 Glyco_trans_2_3 PF13632.6 AJD67209.1 - 2.9e-15 56.7 2.8 2.9e-15 56.7 2.8 2.4 3 1 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 AJD67209.1 - 8.8e-13 48.1 0.0 1.6e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 AJD67209.1 - 5.2e-10 39.4 0.0 8.6e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD67209.1 - 0.0015 18.5 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Abhydrolase_2 PF02230.16 AJD67210.1 - 8.9e-45 153.1 0.0 1e-44 152.9 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 AJD67210.1 - 2.1e-06 27.2 0.0 0.033 13.5 0.2 2.8 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 AJD67210.1 - 2.9e-06 26.9 0.2 0.025 14.1 0.0 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase family FSH1 PF03959.13 AJD67210.1 - 1.6e-05 24.6 0.0 5e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 AJD67210.1 - 3.8e-05 24.4 5.9 5.3e-05 23.9 5.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 AJD67210.1 - 0.00035 20.2 0.0 0.00048 19.8 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 AJD67210.1 - 0.005 16.5 1.2 0.04 13.5 0.1 2.4 2 1 1 3 3 3 2 alpha/beta hydrolase fold AXE1 PF05448.12 AJD67210.1 - 0.022 13.4 0.1 0.03 13.0 0.1 1.1 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 AJD67210.1 - 0.037 13.9 0.6 0.051 13.4 0.6 1.3 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 AJD67210.1 - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein His_kinase PF06580.13 AJD67211.1 - 1.2e-20 73.6 0.0 1.8e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase GTA_holin_3TM PF11351.8 AJD67211.1 - 0.031 14.8 0.4 0.13 12.8 0.2 2.2 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release DUF4212 PF13937.6 AJD67211.1 - 8.3 6.9 7.7 2.4 8.6 3.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4212) Response_reg PF00072.24 AJD67212.1 - 4.6e-28 97.6 0.0 8e-28 96.8 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain LytTR PF04397.15 AJD67212.1 - 4.9e-24 84.4 0.1 9.1e-24 83.5 0.1 1.4 2 0 0 2 2 2 1 LytTr DNA-binding domain Porphobil_deam PF01379.20 AJD67213.1 - 1.2e-78 263.3 0.0 1.6e-78 262.9 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 AJD67213.1 - 6e-14 52.2 0.0 1.2e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DUF481 PF04338.12 AJD67214.1 - 2e-57 194.6 13.6 2.4e-57 194.4 13.6 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF481 WYL PF13280.6 AJD67215.1 - 1.1e-38 133.0 0.1 1.5e-38 132.6 0.1 1.2 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 AJD67215.1 - 1.8e-12 47.0 0.0 3.7e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 AJD67215.1 - 0.0066 16.2 0.2 0.046 13.5 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 AJD67215.1 - 0.16 12.1 1.9 1.1 9.4 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain Lipocalin_2 PF08212.12 AJD67216.1 - 2.2e-41 141.2 0.4 2.6e-41 141.0 0.4 1.1 1 0 0 1 1 1 1 Lipocalin-like domain GH43_C PF16369.5 AJD67216.1 - 0.059 14.0 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal lipocalin-like domain Peptidase_S9 PF00326.21 AJD67218.1 - 1e-48 165.6 2.0 2e-48 164.7 2.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 AJD67218.1 - 6.5e-31 107.6 0.1 1.2e-25 90.2 0.1 2.0 2 0 0 2 2 2 2 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 AJD67218.1 - 0.00013 21.4 0.6 0.018 14.3 0.3 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Tannase PF07519.11 AJD67218.1 - 0.012 14.5 0.4 0.023 13.6 0.4 1.3 1 0 0 1 1 1 0 Tannase and feruloyl esterase Abhydrolase_4 PF08386.10 AJD67218.1 - 0.035 14.2 0.0 0.086 13.0 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_1 PF00561.20 AJD67218.1 - 0.048 13.3 0.1 0.15 11.7 0.0 1.7 1 1 1 2 2 2 0 alpha/beta hydrolase fold AAA_18 PF13238.6 AJD67219.1 - 4.9e-05 23.9 0.0 0.00047 20.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD67219.1 - 0.00028 21.1 0.0 0.0034 17.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 AJD67219.1 - 0.0011 19.6 0.0 0.0015 19.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AJD67219.1 - 0.0015 18.6 0.0 0.0046 17.0 0.0 1.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_21 PF13304.6 AJD67219.1 - 0.0043 16.9 0.0 0.0057 16.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system Cytidylate_kin PF02224.18 AJD67219.1 - 0.013 15.3 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 Cytidylate kinase AAA_29 PF13555.6 AJD67219.1 - 0.015 15.0 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 AJD67219.1 - 0.022 15.3 0.0 0.05 14.1 0.0 1.6 2 0 0 2 2 1 0 ABC transporter RNA_helicase PF00910.22 AJD67219.1 - 0.025 14.9 0.0 0.038 14.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 AJD67219.1 - 0.026 14.8 0.0 0.038 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 AJD67219.1 - 0.045 13.7 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 AJD67219.1 - 0.065 13.7 0.0 0.083 13.3 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IPT PF01745.16 AJD67219.1 - 0.078 12.4 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_22 PF13401.6 AJD67219.1 - 0.081 13.2 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 AJD67219.1 - 0.1 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_16 PF13191.6 AJD67219.1 - 0.11 12.9 0.0 0.21 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 AJD67219.1 - 0.13 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 AJD67219.1 - 0.14 11.6 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_15 PF13175.6 AJD67219.1 - 0.14 11.8 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 AJD67219.1 - 0.16 11.7 0.1 0.32 10.7 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein KTI12 PF08433.10 AJD67219.1 - 0.23 10.9 0.1 0.42 10.0 0.1 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Dynamin_N PF00350.23 AJD67219.1 - 0.25 11.4 0.0 0.39 10.8 0.0 1.2 1 0 0 1 1 1 0 Dynamin family Aminotran_1_2 PF00155.21 AJD67220.1 - 1.9e-53 182.0 0.0 2.1e-53 181.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AJD67220.1 - 0.0059 15.9 0.0 0.009 15.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.13 AJD67220.1 - 0.0084 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 AJD67220.1 - 0.16 10.5 0.0 0.24 9.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_S9_N PF02897.15 AJD67221.1 - 1.4e-115 386.4 4.9 1.8e-115 386.1 4.9 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Peptidase_S9 PF00326.21 AJD67221.1 - 1e-66 224.4 0.4 2e-66 223.5 0.4 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 AJD67221.1 - 4.3e-05 23.3 3.7 0.00071 19.2 0.4 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.13 AJD67221.1 - 0.00033 20.6 0.5 0.001 19.0 0.0 1.9 2 0 0 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.12 AJD67221.1 - 0.026 13.2 0.0 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) DUF454 PF04304.13 AJD67222.1 - 1.3e-35 121.8 11.6 1.5e-35 121.6 11.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF454) PhoR PF11808.8 AJD67222.1 - 0.16 12.4 11.6 0.068 13.6 3.3 2.3 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR LPAM_2 PF13627.6 AJD67223.1 - 8.5e-07 28.6 1.7 1.2e-06 28.2 1.7 1.2 1 0 0 1 1 1 1 Prokaryotic lipoprotein-attachment site DAP_epimerase PF01678.19 AJD67224.1 - 3.5e-52 175.7 1.1 9.2e-26 90.4 0.6 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 AJD67224.1 - 0.0015 18.1 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DUF484 PF04340.12 AJD67225.1 - 3.2e-65 220.0 0.1 3.6e-65 219.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF484 Phage_integrase PF00589.22 AJD67226.1 - 4.4e-47 160.1 0.0 6.9e-47 159.4 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 AJD67226.1 - 1.5e-18 66.8 5.7 8.8e-18 64.4 4.4 2.6 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 AJD67226.1 - 2.6e-07 31.0 0.7 5.4e-06 26.8 0.7 2.3 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Trypsin_2 PF13365.6 AJD67226.1 - 0.054 14.4 0.3 0.44 11.4 0.0 2.0 1 1 1 2 2 2 0 Trypsin-like peptidase domain Proteasome PF00227.26 AJD67227.1 - 1.1e-20 74.0 1.5 2.3e-20 72.9 1.5 1.5 1 1 0 1 1 1 1 Proteasome subunit ABA_WDS PF02496.16 AJD67227.1 - 0.27 11.7 1.7 1.6 9.2 0.1 2.6 2 1 1 3 3 3 0 ABA/WDS induced protein AAA_2 PF07724.14 AJD67228.1 - 2.1e-48 164.7 0.1 1.9e-40 138.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.29 AJD67228.1 - 1e-16 61.6 0.0 9.8e-07 29.3 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD67228.1 - 1.3e-07 31.7 0.2 2e-05 24.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AJD67228.1 - 7.5e-07 29.5 0.0 0.0002 21.7 0.0 2.9 3 0 0 3 3 2 1 AAA domain ClpB_D2-small PF10431.9 AJD67228.1 - 1.2e-06 28.5 1.0 3.5e-06 27.0 0.3 2.2 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_16 PF13191.6 AJD67228.1 - 1.2e-06 29.0 1.3 7.9e-05 23.1 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain MCM PF00493.23 AJD67228.1 - 7.2e-06 25.3 0.1 0.00059 19.0 0.0 2.2 2 0 0 2 2 2 1 MCM P-loop domain Mg_chelatase PF01078.21 AJD67228.1 - 8.1e-05 22.1 0.1 0.0032 16.9 0.0 2.9 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 AJD67228.1 - 0.00094 19.0 0.1 0.21 11.3 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 AJD67228.1 - 0.0015 19.1 0.0 0.004 17.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD67228.1 - 0.0025 18.0 0.0 0.017 15.3 0.0 2.4 3 0 0 3 3 2 1 AAA domain Sigma54_activat PF00158.26 AJD67228.1 - 0.003 17.3 0.0 0.061 13.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_28 PF13521.6 AJD67228.1 - 0.0066 16.7 0.8 0.033 14.4 0.0 2.5 3 0 0 3 3 2 1 AAA domain TniB PF05621.11 AJD67228.1 - 0.01 15.3 0.9 0.031 13.7 0.0 2.2 3 1 0 3 3 2 0 Bacterial TniB protein TIP49 PF06068.13 AJD67228.1 - 0.013 14.7 0.0 0.024 13.8 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain IstB_IS21 PF01695.17 AJD67228.1 - 0.013 15.2 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.22 AJD67228.1 - 0.018 14.7 0.0 0.18 11.4 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 AJD67228.1 - 0.021 14.6 0.0 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 AJD67228.1 - 0.066 13.1 0.0 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase FtsK_SpoIIIE PF01580.18 AJD67228.1 - 0.077 12.3 0.0 0.31 10.3 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family NTPase_1 PF03266.15 AJD67228.1 - 0.085 12.8 0.3 0.77 9.6 0.0 2.2 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 AJD67228.1 - 0.09 12.8 0.0 0.44 10.5 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DEAD PF00270.29 AJD67228.1 - 0.092 12.5 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_7 PF12775.7 AJD67228.1 - 0.1 12.1 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 AJD67228.1 - 0.11 12.4 0.1 1.8 8.5 0.0 2.5 3 0 0 3 3 3 0 NACHT domain ABC_tran PF00005.27 AJD67228.1 - 0.14 12.7 0.0 0.47 11.0 0.0 1.8 1 1 1 2 2 2 0 ABC transporter PduV-EutP PF10662.9 AJD67228.1 - 0.16 11.7 0.0 0.76 9.5 0.0 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 AJD67228.1 - 0.23 11.8 2.4 3.6 7.9 0.8 2.8 2 1 0 2 2 2 0 AAA domain dCMP_cyt_deam_1 PF00383.23 AJD67229.1 - 2.6e-16 59.4 0.0 3.4e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 AJD67229.1 - 8.8e-13 48.2 0.0 9.9e-13 48.0 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Acetyltransf_10 PF13673.7 AJD67230.1 - 1.3e-11 44.6 0.0 1.7e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD67230.1 - 5.5e-07 29.9 0.0 7.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD67230.1 - 0.00033 20.9 0.0 0.0004 20.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_5 PF13444.6 AJD67230.1 - 0.062 14.0 0.0 0.65 10.7 0.0 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain HlyD_D23 PF16576.5 AJD67231.1 - 7.8e-17 61.2 14.1 5.8e-15 55.1 14.1 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD67231.1 - 1.9e-15 57.5 6.0 6.5e-14 52.5 0.0 3.0 3 1 0 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD67231.1 - 1.9e-13 50.0 4.4 8.2e-13 48.0 3.4 4.3 4 0 0 4 4 4 2 Biotin-lipoyl like HlyD PF00529.20 AJD67231.1 - 0.00042 20.1 8.9 0.0019 18.0 2.9 2.4 2 1 0 2 2 2 2 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD67231.1 - 0.0081 16.0 0.0 6.1 6.8 0.0 2.5 2 0 0 2 2 2 2 Biotin-requiring enzyme TFIIA PF03153.13 AJD67231.1 - 0.62 10.0 14.2 0.72 9.8 14.2 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF4407 PF14362.6 AJD67231.1 - 2.9 7.1 23.6 5 6.4 23.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) MFS_1 PF07690.16 AJD67232.1 - 5.2e-10 38.8 57.9 2.3e-09 36.6 52.1 3.4 2 1 0 2 2 2 1 Major Facilitator Superfamily VEGFR-2_TMD PF17988.1 AJD67232.1 - 0.098 12.1 1.5 0.36 10.3 1.5 2.1 1 0 0 1 1 1 0 VEGFR-2 Transmembrane domain DUF726 PF05277.12 AJD67232.1 - 0.13 11.2 4.7 0.26 10.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF726) Ubie_methyltran PF01209.18 AJD67233.1 - 2.9e-89 298.4 0.0 3.6e-89 298.1 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 AJD67233.1 - 2.7e-20 72.9 0.1 4.3e-20 72.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD67233.1 - 8.1e-18 64.9 0.1 1.3e-17 64.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67233.1 - 6.5e-15 55.2 0.0 9.6e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67233.1 - 2.6e-08 33.9 0.0 3.7e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67233.1 - 3.8e-08 34.0 0.1 5.9e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 AJD67233.1 - 1.8e-05 24.4 0.1 3.6e-05 23.5 0.1 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 AJD67233.1 - 0.00017 21.5 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 AJD67233.1 - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 AJD67233.1 - 0.016 14.8 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.16 AJD67233.1 - 0.22 10.1 0.0 0.32 9.5 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase GGDEF PF00990.21 AJD67234.1 - 5.4e-29 101.0 0.0 7.8e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HAMP PF00672.25 AJD67234.1 - 0.00063 20.1 0.3 0.0013 19.0 0.3 1.6 1 0 0 1 1 1 1 HAMP domain Peptidase_M1 PF01433.20 AJD67235.1 - 4e-44 150.8 0.0 5.9e-44 150.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain Leuk-A4-hydro_C PF09127.11 AJD67235.1 - 1.2e-26 93.0 0.0 2.1e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 Leukotriene A4 hydrolase, C-terminal Peptidase_M1_N PF17900.1 AJD67235.1 - 2.9e-16 60.2 0.0 4.7e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain Peptidase_MA_2 PF13485.6 AJD67235.1 - 0.0031 17.2 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M61 PF05299.12 AJD67235.1 - 0.013 15.9 2.1 1 9.8 2.0 3.3 2 1 0 2 2 2 0 M61 glycyl aminopeptidase Hydrolase PF00702.26 AJD67237.1 - 7.9e-18 65.5 2.1 3e-15 57.1 0.2 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 AJD67237.1 - 3.6e-15 56.5 0.0 1.2e-13 51.5 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 AJD67237.1 - 4.3e-11 43.6 5.8 3.2e-10 40.7 5.8 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD67237.1 - 1.4e-06 28.3 0.0 3.2e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 AJD67237.1 - 0.0013 18.8 0.0 0.0034 17.5 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 AJD67237.1 - 0.1 12.1 0.0 0.22 11.0 0.0 1.5 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_3 PF08282.12 AJD67237.1 - 0.13 12.0 0.0 7.5 6.2 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase PQQ PF01011.21 AJD67238.1 - 4.4e-26 89.5 18.8 3.8e-07 29.7 0.0 8.2 8 1 0 8 8 8 5 PQQ enzyme repeat PQQ_2 PF13360.6 AJD67238.1 - 1.3e-20 74.1 4.2 4.4e-12 46.1 0.2 3.9 3 1 1 4 4 4 2 PQQ-like domain PQQ_3 PF13570.6 AJD67238.1 - 1.4e-16 60.4 22.7 2.2e-07 31.2 0.8 7.8 8 0 0 8 8 8 4 PQQ-like domain DUF1381 PF07129.11 AJD67238.1 - 0.21 11.5 0.2 0.38 10.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1381) Ank_5 PF13857.6 AJD67239.1 - 4.9e-26 90.5 7.4 2.9e-08 33.8 0.2 4.7 2 2 2 4 4 4 4 Ankyrin repeats (many copies) Ank_4 PF13637.6 AJD67239.1 - 5.7e-26 90.5 1.1 0.00015 22.2 0.0 5.7 2 1 3 5 5 5 5 Ankyrin repeats (many copies) Ank_2 PF12796.7 AJD67239.1 - 2.3e-24 85.8 0.9 3.9e-08 33.8 0.0 4.3 2 1 2 4 4 4 3 Ankyrin repeats (3 copies) Ank_3 PF13606.6 AJD67239.1 - 3.1e-20 70.1 0.7 0.0022 18.3 0.0 6.9 6 0 0 6 6 6 4 Ankyrin repeat Ank PF00023.30 AJD67239.1 - 3.3e-18 65.2 9.8 0.0016 18.8 0.0 7.3 8 0 0 8 8 8 4 Ankyrin repeat SBP_bac_3 PF00497.20 AJD67239.1 - 1.2e-14 54.3 0.1 1.1e-12 47.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Cytochrome_CBB3 PF13442.6 AJD67240.1 - 1.2e-10 41.5 0.6 7.7e-10 39.0 0.6 2.1 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AJD67240.1 - 1.1e-09 39.3 0.0 2.8e-09 38.0 0.0 1.7 2 0 0 2 2 2 1 Cytochrome c FixO PF02433.15 AJD67240.1 - 0.036 13.5 0.0 0.049 13.1 0.0 1.1 1 0 0 1 1 1 0 Cytochrome C oxidase, mono-heme subunit/FixO Cytochrom_C550 PF14495.6 AJD67240.1 - 0.13 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c-550 domain FAP PF07174.11 AJD67240.1 - 7 6.0 34.8 8.7 5.7 34.8 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) Lactonase PF10282.9 AJD67241.1 - 1.5e-20 73.8 0.0 6.6e-11 42.1 0.0 2.5 1 1 1 2 2 2 2 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 AJD67241.1 - 2e-13 49.7 0.9 2.6e-05 23.0 0.1 3.1 1 1 2 3 3 3 2 Cytochrome D1 heme domain SGL PF08450.12 AJD67241.1 - 1.4e-06 28.0 0.0 3.1e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region PD40 PF07676.12 AJD67241.1 - 3.8e-06 26.7 0.0 0.28 11.2 0.0 4.5 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Glu_cyclase_2 PF05096.12 AJD67241.1 - 1.5e-05 24.6 0.0 0.015 14.7 0.0 2.4 2 0 0 2 2 2 2 Glutamine cyclotransferase NHL PF01436.21 AJD67241.1 - 0.00023 21.0 0.4 1.3 9.2 0.0 4.8 5 0 0 5 5 5 1 NHL repeat Phytase-like PF13449.6 AJD67241.1 - 0.00027 21.0 0.0 0.029 14.3 0.0 2.8 1 1 2 3 3 3 2 Esterase-like activity of phytase DUF1513 PF07433.11 AJD67241.1 - 0.00043 19.4 0.1 0.033 13.3 0.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF1513) FlaG PF03646.15 AJD67241.1 - 0.044 14.0 0.1 16 5.7 0.0 3.4 4 0 0 4 4 4 0 FlaG protein DUF4915 PF16261.5 AJD67241.1 - 0.093 11.9 0.0 1.1 8.4 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4915) Str_synth PF03088.16 AJD67241.1 - 0.13 12.4 0.0 9.8 6.4 0.0 3.3 3 1 1 4 4 4 0 Strictosidine synthase WD40 PF00400.32 AJD67241.1 - 0.17 12.8 0.1 28 5.8 0.0 3.6 4 0 0 4 4 4 0 WD domain, G-beta repeat DUF2415 PF10313.9 AJD67241.1 - 0.25 11.3 1.2 6.3 6.8 0.0 3.6 4 1 0 4 4 4 0 Uncharacterised protein domain (DUF2415) ADH_zinc_N PF00107.26 AJD67242.1 - 1.6e-21 76.6 0.1 3.2e-21 75.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD67242.1 - 1e-20 73.7 0.2 2.1e-20 72.6 0.2 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 AJD67242.1 - 0.0071 17.4 0.0 0.02 15.9 0.0 1.8 2 1 0 2 2 2 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.14 AJD67242.1 - 0.2 11.2 0.2 0.31 10.6 0.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLLAC PF15675.5 AJD67242.1 - 0.24 11.0 2.9 0.54 9.9 2.9 1.5 1 0 0 1 1 1 0 CLLAC-motif containing domain TonB_dep_Rec PF00593.24 AJD67243.1 - 8.9e-45 154.4 9.8 1.3e-44 153.8 9.8 1.2 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD67243.1 - 1.6e-09 38.3 0.1 3.3e-09 37.3 0.1 1.6 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Sigma54_activat PF00158.26 AJD67244.1 - 2.2e-59 199.9 0.0 3.9e-59 199.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AJD67244.1 - 8.2e-18 64.8 0.0 2.4e-17 63.3 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 AJD67244.1 - 1.2e-15 57.0 0.6 3.6e-15 55.5 0.6 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family GAF PF01590.26 AJD67244.1 - 7.7e-07 29.8 0.3 3.8e-06 27.6 0.1 2.3 2 0 0 2 2 2 1 GAF domain HTH_30 PF13556.6 AJD67244.1 - 7e-05 22.6 0.4 7e-05 22.6 0.4 3.2 4 0 0 4 4 3 1 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 AJD67244.1 - 8.9e-05 22.2 0.4 0.00038 20.2 0.4 2.2 1 0 0 1 1 1 1 Homeodomain-like domain AAA_5 PF07728.14 AJD67244.1 - 0.00021 21.3 0.0 0.00065 19.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) HTH_7 PF02796.15 AJD67244.1 - 0.0023 18.0 0.3 0.0064 16.5 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase HTH_AraC PF00165.23 AJD67244.1 - 0.0039 17.3 0.0 0.01 15.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_50 PF18024.1 AJD67244.1 - 0.0092 15.6 0.3 0.029 14.0 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MCM PF00493.23 AJD67244.1 - 0.012 14.7 0.0 0.043 12.9 0.0 1.7 1 1 0 1 1 1 0 MCM P-loop domain HTH_22 PF13309.6 AJD67244.1 - 0.012 15.6 0.0 0.038 14.1 0.0 1.8 1 0 0 1 1 1 0 HTH domain PAS_9 PF13426.7 AJD67244.1 - 0.013 15.7 0.0 0.046 14.0 0.0 1.9 1 0 0 1 1 1 0 PAS domain T2SSE PF00437.20 AJD67244.1 - 0.017 14.2 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein IclR PF01614.18 AJD67244.1 - 0.018 14.8 0.0 0.046 13.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial transcriptional regulator AAA PF00004.29 AJD67244.1 - 0.026 15.0 0.0 0.065 13.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAS_8 PF13188.7 AJD67244.1 - 0.027 14.5 0.1 0.1 12.7 0.1 2.0 1 0 0 1 1 1 0 PAS domain HTH_28 PF13518.6 AJD67244.1 - 0.032 14.4 0.4 0.42 10.8 0.2 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.7 AJD67244.1 - 0.043 14.0 0.0 0.18 12.0 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain Mg_chelatase PF01078.21 AJD67244.1 - 0.068 12.6 0.3 4.9 6.5 0.0 2.3 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 AJD67244.1 - 0.072 12.8 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein PAS PF00989.25 AJD67244.1 - 0.076 13.0 0.0 0.95 9.5 0.0 2.4 2 0 0 2 2 2 0 PAS fold LZ_Tnp_IS481 PF13011.6 AJD67244.1 - 0.53 10.9 3.3 0.72 10.4 0.3 2.6 3 0 0 3 3 2 0 leucine-zipper of insertion element IS481 HTH_38 PF13936.6 AJD67244.1 - 1.2 8.9 3.6 0.42 10.4 0.3 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain PfkB PF00294.24 AJD67245.1 - 9.9e-36 123.6 0.0 1.4e-35 123.1 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MreB_Mbl PF06723.13 AJD67246.1 - 9.1e-152 504.5 4.6 1e-151 504.4 4.6 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.20 AJD67246.1 - 6e-14 51.1 0.5 1.3e-13 50.1 0.1 1.8 2 1 0 2 2 2 1 Hsp70 protein FtsA PF14450.6 AJD67246.1 - 7.4e-13 48.8 1.1 2.5e-12 47.1 0.1 2.3 2 1 0 2 2 2 1 Cell division protein FtsA Actin PF00022.19 AJD67246.1 - 3.7e-12 45.6 0.0 2.1e-08 33.2 0.0 2.1 1 1 1 2 2 2 2 Actin PilM_2 PF11104.8 AJD67246.1 - 1e-08 34.6 0.0 0.0012 17.9 0.0 2.5 2 1 0 3 3 3 2 Type IV pilus assembly protein PilM; Ppx-GppA PF02541.16 AJD67246.1 - 0.0013 18.2 0.5 0.0026 17.3 0.5 1.5 1 1 0 1 1 1 1 Ppx/GppA phosphatase family DDR PF08841.10 AJD67246.1 - 0.0014 17.7 1.8 0.0038 16.3 0.7 2.0 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain EutA PF06277.11 AJD67246.1 - 0.0062 15.4 0.3 0.011 14.7 0.3 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA StbA PF06406.11 AJD67246.1 - 0.083 12.1 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 StbA protein MreC PF04085.14 AJD67247.1 - 3e-33 114.9 0.0 4.5e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 rod shape-determining protein MreC YajC PF02699.15 AJD67247.1 - 0.0016 18.3 0.1 0.14 12.0 0.0 2.5 2 0 0 2 2 2 2 Preprotein translocase subunit HTH_37 PF13744.6 AJD67247.1 - 0.025 14.5 0.7 0.046 13.7 0.7 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MreD PF04093.12 AJD67248.1 - 7.7e-33 113.8 6.6 8.7e-33 113.7 6.6 1.0 1 0 0 1 1 1 1 rod shape-determining protein MreD Transpeptidase PF00905.22 AJD67249.1 - 6.5e-64 216.0 0.0 8.5e-64 215.7 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 AJD67249.1 - 1.5e-40 139.5 0.0 2.5e-40 138.7 0.0 1.4 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain FTSW_RODA_SPOVE PF01098.19 AJD67250.1 - 4.8e-96 321.9 18.6 6.4e-96 321.5 18.6 1.0 1 0 0 1 1 1 1 Cell cycle protein Glyco_hydro_28 PF00295.17 AJD67251.1 - 6e-45 153.7 6.1 8.1e-45 153.3 6.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 28 NosD PF05048.13 AJD67251.1 - 0.0052 16.1 4.0 0.0098 15.2 4.0 1.4 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) SLT_2 PF13406.6 AJD67252.1 - 1.3e-91 306.9 0.1 1.5e-91 306.7 0.1 1.0 1 0 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 AJD67252.1 - 0.043 14.3 0.8 1.3 9.6 0.0 2.5 3 0 0 3 3 3 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DPBB_1 PF03330.18 AJD67253.1 - 2.3e-24 85.4 0.0 5.6e-24 84.2 0.0 1.7 1 0 0 1 1 1 1 Lytic transglycolase SPOR PF05036.13 AJD67253.1 - 1.1e-11 45.0 3.0 2.3e-11 43.9 0.5 2.4 2 0 0 2 2 2 1 Sporulation related domain Peptidase_S11 PF00768.20 AJD67254.1 - 6.2e-80 268.1 0.0 8.2e-80 267.7 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase PBP5_C PF07943.13 AJD67254.1 - 1.7e-27 95.4 0.4 4e-27 94.3 0.4 1.6 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase2 PF13354.6 AJD67254.1 - 2.4e-06 27.3 0.1 3.3e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Transpeptidase PF00905.22 AJD67254.1 - 0.022 14.0 0.1 0.037 13.2 0.1 1.3 1 0 0 1 1 1 0 Penicillin binding protein transpeptidase domain DUF2219 PF09982.9 AJD67255.1 - 6e-91 304.7 1.0 6.8e-91 304.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2219) DUF493 PF04359.14 AJD67256.1 - 1.4e-20 73.6 0.0 1.6e-20 73.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF493) BPL_LplA_LipB PF03099.19 AJD67257.1 - 4.2e-09 36.4 0.0 6e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family TilS_C PF11734.8 AJD67257.1 - 0.017 14.5 0.0 0.042 13.3 0.0 1.6 1 0 0 1 1 1 0 TilS substrate C-terminal domain Radical_SAM PF04055.21 AJD67258.1 - 2.6e-15 57.2 0.0 7.1e-15 55.8 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 AJD67258.1 - 1.5e-09 38.2 0.0 1.6e-08 35.0 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family TSP_NTD PF17804.1 AJD67259.1 - 2.5e-55 187.8 0.5 2.5e-55 187.8 0.5 2.1 2 0 0 2 2 2 1 Tail specific protease N-terminal domain Peptidase_S41 PF03572.18 AJD67259.1 - 9.8e-53 178.1 0.1 2e-52 177.1 0.1 1.6 1 0 0 1 1 1 1 Peptidase family S41 DUF3340 PF11818.8 AJD67259.1 - 1e-38 132.9 4.9 1e-38 132.9 4.9 1.8 2 0 0 2 2 2 1 C-terminal domain of tail specific protease (DUF3340) PDZ PF00595.24 AJD67259.1 - 4.9e-14 52.4 0.7 1.4e-13 51.0 0.7 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 AJD67259.1 - 3.3e-07 30.0 2.8 1.9e-06 27.6 2.8 2.2 1 1 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 AJD67259.1 - 1.7e-06 28.3 0.8 3.7e-06 27.2 0.8 1.6 1 0 0 1 1 1 1 PDZ domain TauE PF01925.19 AJD67260.1 - 3e-30 105.6 38.5 3.5e-30 105.4 38.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE LysR_substrate PF03466.20 AJD67261.1 - 3.7e-39 134.2 16.2 6e-39 133.6 16.2 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD67261.1 - 1.2e-18 66.8 2.3 4.1e-18 65.1 2.3 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Exo_endo_phos PF03372.23 AJD67262.1 - 4.3e-17 62.4 2.2 5.5e-17 62.1 2.2 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family NUDIX PF00293.28 AJD67263.1 - 1.4e-15 57.5 0.1 2.3e-15 56.8 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain CTP_transf_like PF01467.26 AJD67263.1 - 9.8e-10 38.8 0.2 2.1e-09 37.7 0.0 1.8 2 1 0 2 2 2 1 Cytidylyltransferase-like NUDIX_4 PF14815.6 AJD67263.1 - 0.0014 18.6 0.1 0.005 16.8 0.0 1.9 2 0 0 2 2 2 1 NUDIX domain ATP-sulfurylase PF01747.17 AJD67263.1 - 0.046 13.2 0.0 0.21 11.0 0.0 2.0 3 0 0 3 3 3 0 ATP-sulfurylase FAD_syn PF06574.12 AJD67263.1 - 0.11 12.4 0.3 0.18 11.6 0.0 1.5 2 0 0 2 2 2 0 FAD synthetase HIGH_NTase1 PF05636.11 AJD67263.1 - 0.18 11.0 0.0 2.4 7.3 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase NAPRTase PF04095.16 AJD67264.1 - 5e-68 229.3 0.0 6.4e-68 228.9 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family DUF5598 PF18127.1 AJD67264.1 - 3.1e-30 104.5 0.0 6.8e-30 103.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5598) N6_N4_Mtase PF01555.18 AJD67266.1 - 1.3e-10 41.4 0.0 7.2e-07 29.1 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 AJD67266.1 - 0.00017 21.3 0.0 0.00077 19.2 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 AJD67266.1 - 0.0046 16.8 0.0 0.0079 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67266.1 - 0.018 15.7 0.0 0.059 14.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 AJD67266.1 - 0.041 13.4 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.12 AJD67266.1 - 0.15 12.7 0.0 0.45 11.2 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DUF2242 PF10001.9 AJD67267.1 - 2e-48 163.5 0.7 2.7e-48 163.1 0.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2242) MSP1_C PF07462.11 AJD67267.1 - 5.1 5.7 8.1 7.1 5.2 8.1 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Rick_17kDa_Anti PF05433.15 AJD67268.1 - 8.2e-10 38.4 24.6 1.2e-09 37.9 24.6 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 AJD67268.1 - 0.00013 21.6 23.1 0.00022 20.9 23.1 1.3 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 AJD67268.1 - 0.011 15.7 7.7 0.011 15.7 7.7 2.1 1 1 1 2 2 2 0 Glycine zipper DUF533 PF04391.12 AJD67268.1 - 0.052 13.1 7.0 1.1 8.8 5.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF533) PT-VENN PF04829.13 AJD67268.1 - 0.11 12.6 1.0 0.11 12.6 1.0 2.3 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif TraT PF05818.12 AJD67268.1 - 0.23 11.1 5.9 0.073 12.8 3.4 1.4 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein Bacteriocin_IIc PF10439.9 AJD67268.1 - 4.3 7.5 15.3 8.6 6.6 15.3 1.5 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide HTH_Tnp_ISL3 PF13542.6 AJD67269.1 - 0.041 13.3 0.4 0.3 10.5 0.2 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 NAD_binding_2 PF03446.15 AJD67270.1 - 1.9e-42 145.1 0.1 4.9e-42 143.8 0.1 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 AJD67270.1 - 1.3e-22 80.5 0.2 3.7e-22 79.0 0.2 1.9 1 1 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.19 AJD67270.1 - 0.00015 21.2 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AJD67270.1 - 0.00028 21.4 0.0 0.00051 20.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.6 AJD67270.1 - 0.00096 19.4 0.0 0.0021 18.3 0.0 1.6 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 AJD67270.1 - 0.0024 17.8 0.7 0.0046 16.9 0.7 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 AJD67271.1 - 6.8e-25 88.2 0.1 1e-24 87.7 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 AJD67271.1 - 1e-16 61.0 0.0 1.5e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 AJD67271.1 - 3.5e-08 34.1 0.0 6.5e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 AJD67271.1 - 3.6e-05 24.2 0.0 8e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DUF1048 PF06304.11 AJD67271.1 - 0.11 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) BON PF04972.17 AJD67272.1 - 9.4e-19 67.5 5.9 1.2e-18 67.2 5.9 1.2 1 0 0 1 1 1 1 BON domain HATPase_c PF02518.26 AJD67273.1 - 2.1e-20 73.3 0.0 4.2e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE3 PF05227.13 AJD67273.1 - 3.6e-15 56.1 9.8 3.6e-15 56.1 9.8 2.5 3 0 0 3 3 3 1 CHASE3 domain HisKA PF00512.25 AJD67273.1 - 2.3e-11 43.6 5.5 2.9e-11 43.2 0.1 3.5 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 AJD67273.1 - 1.3e-06 28.3 0.1 5.6e-06 26.2 0.1 2.2 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 AJD67273.1 - 4.6e-05 23.6 0.4 0.0003 21.0 0.5 2.5 2 1 0 2 2 2 1 PAS fold PAS PF00989.25 AJD67273.1 - 0.0024 17.9 0.0 0.015 15.3 0.0 2.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 AJD67273.1 - 0.0081 16.4 0.0 0.028 14.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 AJD67273.1 - 0.011 15.9 1.9 0.068 13.3 0.1 3.4 3 2 1 4 4 4 0 PAS fold HATPase_c_5 PF14501.6 AJD67273.1 - 0.025 14.5 0.0 0.056 13.3 0.0 1.6 1 0 0 1 1 1 0 GHKL domain OmpA_membrane PF01389.17 AJD67273.1 - 0.14 11.9 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 OmpA-like transmembrane domain HATPase_c_3 PF13589.6 AJD67273.1 - 0.14 12.0 0.0 0.36 10.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD67274.1 - 2.5e-18 66.3 0.1 3e-18 66.0 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 AJD67275.1 - 1.7e-25 89.3 0.0 5.2e-17 62.0 0.0 2.5 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 AJD67275.1 - 3.8e-17 62.8 0.0 6.1e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67275.1 - 2.3e-05 24.4 0.1 0.00012 22.0 0.1 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 AJD67275.1 - 0.026 14.4 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Glyco_transf_4 PF13439.6 AJD67275.1 - 0.13 12.2 0.0 0.96 9.4 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 HPPK PF01288.20 AJD67276.1 - 3e-24 85.7 0.0 4e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) adh_short_C2 PF13561.6 AJD67277.1 - 8.3e-54 182.6 1.4 9.4e-54 182.4 1.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67277.1 - 1.1e-43 149.0 0.1 1.2e-43 148.8 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD67277.1 - 2.3e-08 34.1 0.5 3.3e-08 33.6 0.5 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD67277.1 - 0.017 14.6 0.4 0.11 12.0 0.4 2.1 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 AJD67277.1 - 0.051 12.9 0.0 0.073 12.4 0.0 1.4 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) Methyltransf_28 PF02636.17 AJD67278.1 - 2.2e-44 152.1 0.0 2.7e-44 151.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 AJD67278.1 - 0.0042 17.8 0.0 0.0091 16.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67278.1 - 0.026 14.4 0.0 0.061 13.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 AJD67278.1 - 0.075 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VanZ PF04892.12 AJD67279.1 - 1.6e-06 28.8 1.5 2.1e-06 28.4 1.3 1.3 1 1 0 1 1 1 1 VanZ like family OppC_N PF12911.7 AJD67279.1 - 0.57 10.2 4.6 0.98 9.4 0.0 2.4 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C TonB_dep_Rec PF00593.24 AJD67280.1 - 2.8e-44 152.8 29.7 2.8e-44 152.8 29.7 1.9 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AJD67280.1 - 5.7e-16 59.0 0.2 1.1e-15 58.1 0.2 1.5 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD67280.1 - 0.0003 19.9 1.5 0.0032 16.5 0.1 2.1 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family 2OG-FeII_Oxy_3 PF13640.6 AJD67281.1 - 6.1e-18 65.5 0.0 9.4e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy PF03171.20 AJD67281.1 - 5.5e-06 26.8 0.0 1.1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily DEC-1_N PF04625.13 AJD67282.1 - 0.73 8.8 10.5 1.5 7.8 10.5 1.4 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region TonB_dep_Rec PF00593.24 AJD67283.1 - 1.4e-24 87.9 32.5 1.4e-23 84.5 32.2 2.3 1 1 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD67283.1 - 8.2e-18 64.6 0.0 1.6e-17 63.6 0.0 1.5 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD67283.1 - 4.8e-11 43.2 0.4 7e-10 39.4 0.1 2.7 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain PDZ_2 PF13180.6 AJD67284.1 - 4.6e-08 33.3 0.1 9.8e-08 32.2 0.1 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 AJD67284.1 - 7.5e-08 32.1 2.1 5.1e-07 29.4 0.2 2.8 2 0 0 2 2 2 1 PDZ domain T2SSC PF11356.8 AJD67284.1 - 1.8e-07 31.2 1.1 1.8e-07 31.2 1.1 2.7 2 1 0 2 2 2 1 Type II secretion system protein C T2SSB PF16537.5 AJD67284.1 - 0.011 15.3 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Type II secretion system protein B PDZ PF00595.24 AJD67284.1 - 0.027 14.8 0.0 0.061 13.7 0.0 1.6 1 0 0 1 1 1 0 PDZ domain Tricorn_PDZ PF14685.6 AJD67284.1 - 0.033 14.1 0.1 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Tricorn protease PDZ domain LIME1 PF15332.6 AJD67284.1 - 0.41 10.2 4.3 0.67 9.5 4.3 1.3 1 0 0 1 1 1 0 Lck-interacting transmembrane adapter 1 Secretin PF00263.21 AJD67285.1 - 4.4e-50 169.7 2.7 8.2e-50 168.8 2.7 1.5 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein Secretin_N PF03958.17 AJD67285.1 - 4.9e-39 132.6 14.7 3.1e-16 59.5 1.9 3.7 3 0 0 3 3 3 3 Bacterial type II/III secretion system short domain T2SSE PF00437.20 AJD67286.1 - 4.3e-84 281.8 4.5 5.9e-84 281.4 4.5 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 AJD67286.1 - 0.00016 22.1 1.0 0.0015 18.9 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain T2SSE_N PF05157.15 AJD67286.1 - 0.00044 20.5 0.0 0.0012 19.1 0.0 1.8 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_29 PF13555.6 AJD67286.1 - 0.00069 19.3 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AJD67286.1 - 0.00076 19.2 0.1 0.0019 17.9 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 AJD67286.1 - 0.0011 19.4 0.2 0.0032 17.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AJD67286.1 - 0.0026 18.3 0.0 0.004 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD67286.1 - 0.0033 17.7 0.0 0.0075 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 AJD67286.1 - 0.01 15.8 1.3 0.35 10.8 0.4 2.3 1 1 1 2 2 2 0 NTPase AAA_11 PF13086.6 AJD67286.1 - 0.024 14.4 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD67286.1 - 0.043 14.4 0.1 0.13 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 AJD67286.1 - 0.043 13.4 0.1 0.087 12.4 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_21 PF13304.6 AJD67286.1 - 0.07 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 AJD67286.1 - 0.078 13.5 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 AJD67286.1 - 0.078 13.4 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 AJD67286.1 - 0.098 12.1 0.1 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.6 AJD67286.1 - 0.11 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 AJD67286.1 - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea UvrD-helicase PF00580.21 AJD67286.1 - 0.15 11.6 0.1 1 8.8 0.1 2.0 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_7 PF12775.7 AJD67286.1 - 0.18 11.3 0.1 0.3 10.6 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Microtub_bd PF16796.5 AJD67286.1 - 0.19 11.6 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 Microtubule binding Kinesin PF00225.23 AJD67286.1 - 0.21 10.5 0.0 0.32 9.9 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain ResIII PF04851.15 AJD67286.1 - 0.22 11.5 0.0 0.4 10.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit T2SSF PF00482.23 AJD67287.1 - 3.9e-51 172.2 22.9 5.5e-27 94.2 6.5 2.7 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F FtsX PF02687.21 AJD67287.1 - 0.34 11.4 11.1 0.16 12.4 1.4 2.3 2 0 0 2 2 2 0 FtsX-like permease family DUF4064 PF13273.6 AJD67287.1 - 0.5 10.7 4.7 6.1 7.2 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) DUF5383 PF17355.2 AJD67287.1 - 0.79 10.1 0.1 0.79 10.1 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5383) T2SSG PF08334.11 AJD67288.1 - 7.2e-41 138.6 0.1 8.5e-41 138.4 0.1 1.1 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein G N_methyl PF07963.12 AJD67288.1 - 2e-09 36.6 2.9 3e-09 36.0 2.9 1.3 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif Sarcoglycan_1 PF04790.13 AJD67288.1 - 0.19 11.0 0.2 0.23 10.8 0.2 1.1 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein GspH PF12019.8 AJD67289.1 - 2e-09 37.8 0.2 3.1e-09 37.2 0.2 1.3 1 0 0 1 1 1 1 Type II transport protein GspH N_methyl PF07963.12 AJD67289.1 - 1.1e-06 28.0 1.6 2e-06 27.1 1.6 1.5 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif T2SSI PF02501.17 AJD67290.1 - 5.9e-17 61.6 3.1 7.1e-17 61.4 3.1 1.1 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein I T2SSJ PF11612.8 AJD67291.1 - 1.9e-32 112.4 0.1 2.9e-32 111.8 0.1 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein J N_methyl PF07963.12 AJD67291.1 - 9.7e-10 37.6 1.1 1.5e-09 37.0 1.1 1.3 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif DUF2939 PF11159.8 AJD67291.1 - 0.49 10.8 5.9 0.61 10.5 3.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2939) T2SSK PF03934.13 AJD67292.1 - 2.5e-80 269.9 1.9 2.9e-80 269.7 1.9 1.0 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein K PilX_N PF14341.6 AJD67292.1 - 1.5 8.8 5.6 3.6 7.6 5.6 1.7 1 0 0 1 1 1 0 PilX N-terminal T2SSL PF05134.13 AJD67293.1 - 1.4e-14 54.1 7.6 8.1e-14 51.5 7.6 2.3 1 1 0 1 1 1 1 Type II secretion system (T2SS), protein L GspL_C PF12693.7 AJD67293.1 - 1.3e-06 28.4 5.3 3.6e-06 26.9 5.3 1.7 1 1 0 1 1 1 1 GspL periplasmic domain Cro PF09048.10 AJD67293.1 - 0.032 14.3 0.3 0.089 12.8 0.3 1.7 1 0 0 1 1 1 0 Cro T2SSM PF04612.12 AJD67294.1 - 1.2e-25 90.4 9.8 1.3e-25 90.3 9.8 1.0 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M DUF2759 PF10958.8 AJD67294.1 - 0.18 11.5 0.4 4.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2759) T2SSN PF01203.19 AJD67295.1 - 2.5e-14 54.0 15.8 3.2e-14 53.7 15.8 1.1 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein N TonB_dep_Rec PF00593.24 AJD67296.1 - 9.2e-34 118.1 45.3 2.8e-32 113.2 35.0 2.8 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD67296.1 - 1.9e-15 57.3 1.9 6.3e-15 55.7 1.9 2.0 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Glyco_hydro_2_N PF02837.18 AJD67297.1 - 3.3e-16 59.6 0.0 6.7e-16 58.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain BetaGal_dom4_5 PF13364.6 AJD67297.1 - 0.00016 22.2 0.0 0.00034 21.2 0.0 1.6 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Glyco_hydro2_C5 PF18565.1 AJD67298.1 - 1.8e-28 98.4 0.0 3e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 Glycoside hydrolase family 2 C-terminal domain 5 DUF4982 PF16355.5 AJD67298.1 - 2.6e-19 68.9 0.1 4.8e-19 68.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4982) Glyco_hydro_2_C PF02836.17 AJD67298.1 - 2.2e-15 56.6 0.0 6.2e-12 45.2 0.0 2.7 2 1 0 2 2 2 1 Glycosyl hydrolases family 2, TIM barrel domain BetaGal_dom4_5 PF13364.6 AJD67298.1 - 0.0014 19.2 0.0 0.62 10.7 0.0 2.6 2 0 0 2 2 2 2 Beta-galactosidase jelly roll domain Invasin_D3 PF09134.10 AJD67298.1 - 0.08 13.3 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 Invasin, domain 3 NAGLU PF05089.12 AJD67299.1 - 2.7e-131 437.5 2.0 4.2e-131 436.9 2.0 1.3 1 0 0 1 1 1 1 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain NAGLU_C PF12972.7 AJD67299.1 - 7.7e-48 163.3 7.5 7.7e-48 163.3 7.5 1.6 2 0 0 2 2 2 1 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain NAGLU_N PF12971.7 AJD67299.1 - 6.1e-19 67.6 0.0 1.1e-18 66.8 0.0 1.4 1 0 0 1 1 1 1 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain DUF3237 PF11578.8 AJD67299.1 - 0.14 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) DUF1624 PF07786.12 AJD67301.1 - 9.1e-10 38.5 9.3 1.2e-09 38.1 4.4 2.8 2 1 0 3 3 3 1 Protein of unknown function (DUF1624) DUF5009 PF16401.5 AJD67301.1 - 1.9e-05 24.3 3.3 4e-05 23.2 3.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF5009) UTRA PF07702.13 AJD67302.1 - 1.2e-32 112.7 1.0 2.5e-32 111.7 0.3 1.7 2 0 0 2 2 2 1 UTRA domain GntR PF00392.21 AJD67302.1 - 8.3e-20 70.2 0.4 2e-19 69.0 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 AJD67302.1 - 5.6e-06 26.2 2.1 4.2e-05 23.3 0.5 2.4 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 AJD67302.1 - 0.0037 17.0 0.2 0.0076 16.0 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 AJD67302.1 - 0.0073 16.4 0.1 0.021 14.9 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 AJD67302.1 - 0.0074 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain Rrf2 PF02082.20 AJD67302.1 - 0.0098 16.2 0.0 0.024 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 AJD67302.1 - 0.028 14.3 0.0 0.081 12.9 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 AJD67302.1 - 0.044 14.3 0.1 0.24 11.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.12 AJD67302.1 - 0.064 13.2 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_41 PF14502.6 AJD67302.1 - 0.14 11.9 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 AJD67302.1 - 0.15 11.8 0.0 2.5 7.8 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4423) MFS_1 PF07690.16 AJD67303.1 - 1.3e-13 50.6 57.6 1.6e-13 50.4 53.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Peripla_BP_3 PF13377.6 AJD67304.1 - 3.9e-37 128.1 0.0 1.4e-34 119.8 0.0 2.6 2 1 1 3 3 3 2 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD67304.1 - 1.2e-23 83.9 0.0 1.7e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD67304.1 - 1.6e-18 66.2 0.5 4.6e-18 64.7 0.5 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD67304.1 - 1.2e-07 31.6 0.0 1.7e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_31 PF13560.6 AJD67304.1 - 0.018 15.4 0.1 0.047 14.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 AJD67304.1 - 0.12 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix SIS PF01380.22 AJD67305.1 - 3.1e-35 120.9 0.0 1.6e-17 63.6 0.2 2.4 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 AJD67305.1 - 5.8e-05 23.1 1.9 0.00054 20.0 0.1 2.8 2 1 1 3 3 3 1 SIS domain Glyco_transf_4 PF13439.6 AJD67305.1 - 0.062 13.3 0.1 0.46 10.5 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Amidohydro_1 PF01979.20 AJD67306.1 - 1.4e-27 97.0 0.1 2.4e-27 96.2 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 AJD67306.1 - 3.8e-09 36.6 6.3 2e-08 34.1 0.3 2.8 2 1 1 3 3 3 2 Amidohydrolase family TonB_dep_Rec PF00593.24 AJD67307.1 - 3.1e-40 139.4 70.8 3.1e-40 139.4 70.8 2.7 1 1 2 3 3 3 1 TonB dependent receptor Plug PF07715.15 AJD67307.1 - 1.5e-13 51.2 0.3 1.5e-13 51.2 0.3 3.8 5 0 0 5 5 5 1 TonB-dependent Receptor Plug Domain PolyA_pol PF01743.20 AJD67308.1 - 2.6e-19 69.9 0.1 7.5e-19 68.4 0.1 1.8 1 1 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 AJD67308.1 - 1.4e-12 47.1 0.0 3.5e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Probable RNA and SrmB- binding site of polymerase A HD PF01966.22 AJD67308.1 - 7.6e-07 29.4 1.0 1.6e-06 28.3 0.3 1.9 2 0 0 2 2 2 1 HD domain RB_B PF01857.20 AJD67308.1 - 0.16 12.0 0.2 0.3 11.1 0.2 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain GMC_oxred_N PF00732.19 AJD67309.1 - 1.9e-96 322.9 0.0 2.5e-96 322.5 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 AJD67309.1 - 4.1e-40 137.6 0.1 6.2e-40 137.0 0.1 1.3 1 0 0 1 1 1 1 GMC oxidoreductase Lycopene_cycl PF05834.12 AJD67309.1 - 0.001 18.2 0.1 0.0015 17.6 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 AJD67309.1 - 0.0012 19.0 0.1 0.0031 17.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AJD67309.1 - 0.002 17.8 0.5 0.16 11.5 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AJD67309.1 - 0.016 14.5 0.0 0.1 11.8 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD67309.1 - 0.02 14.1 0.1 0.035 13.4 0.1 1.3 1 0 0 1 1 1 0 Thi4 family FAD_binding_2 PF00890.24 AJD67309.1 - 0.031 13.4 0.6 0.21 10.6 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.14 AJD67309.1 - 0.15 10.7 0.1 0.22 10.2 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein Aldedh PF00171.22 AJD67310.1 - 2.7e-177 589.9 0.1 3.1e-177 589.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family BCCT PF02028.17 AJD67311.1 - 2.8e-177 590.0 34.2 3.2e-177 589.8 34.2 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Exo_endo_phos PF03372.23 AJD67312.1 - 3.7e-10 39.7 0.1 7.6e-10 38.7 0.1 1.5 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 AJD67312.1 - 0.0028 17.5 0.3 0.045 13.6 0.3 2.2 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase UxaC PF02614.14 AJD67312.1 - 0.084 11.7 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Glucuronate isomerase DSBA PF01323.20 AJD67313.1 - 5.9e-10 39.2 0.6 1.6e-08 34.5 0.6 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 AJD67313.1 - 1.7e-07 31.6 0.0 2.2e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 AJD67313.1 - 0.0041 17.1 0.2 0.11 12.6 0.0 2.8 2 1 1 3 3 3 1 Thioredoxin domain PROL5-SMR PF15621.6 AJD67313.1 - 0.0047 17.4 1.5 0.0085 16.6 1.5 1.4 1 0 0 1 1 1 1 Proline-rich submaxillary gland androgen-regulated family DUF5596 PF18082.1 AJD67313.1 - 0.076 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5596) FAP PF07174.11 AJD67313.1 - 0.77 9.2 21.3 1 8.7 21.3 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) DSBA PF01323.20 AJD67314.1 - 6.4e-12 45.7 0.2 2e-07 31.0 0.0 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 AJD67314.1 - 2e-11 44.3 0.0 2.8e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_15 PF18403.1 AJD67314.1 - 0.0032 17.4 0.0 0.0045 17.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 AJD67314.1 - 0.039 14.0 0.0 7.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin domain Cytochrom_C PF00034.21 AJD67316.1 - 6.5e-20 72.1 3.5 1.2e-09 39.2 0.0 2.9 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 AJD67316.1 - 2e-12 47.3 1.3 2.5e-05 24.5 0.2 2.4 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 AJD67316.1 - 0.00012 21.7 0.2 0.23 11.3 0.0 2.4 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) CCP_MauG PF03150.14 AJD67316.1 - 0.0018 19.0 0.0 0.85 10.3 0.0 2.3 2 0 0 2 2 2 2 Di-haem cytochrome c peroxidase DUF1924 PF09086.11 AJD67316.1 - 0.0066 16.8 0.0 1.2 9.6 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1924) GSu_C4xC__C2xCH PF09698.10 AJD67316.1 - 0.036 14.9 2.5 0.62 10.9 0.0 2.4 2 0 0 2 2 2 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) Cytochrome_C7 PF14522.6 AJD67316.1 - 0.042 13.8 0.0 5.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c PSCyt3 PF07627.11 AJD67316.1 - 0.079 13.2 0.1 0.69 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) PSCyt1 PF07635.11 AJD67316.1 - 2.4 8.8 4.4 27 5.4 0.4 2.5 2 0 0 2 2 2 0 Planctomycete cytochrome C DUF3365 PF11845.8 AJD67316.1 - 4.5 7.6 5.5 17 5.7 0.5 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3365) MMR_HSR1 PF01926.23 AJD67317.1 - 1.6e-18 66.9 0.0 2e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AJD67317.1 - 6e-06 26.3 0.0 0.0012 18.8 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 AJD67317.1 - 2.2e-05 24.0 0.0 2.7e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 AJD67317.1 - 0.00037 20.6 0.0 0.021 14.9 0.0 2.4 1 1 1 2 2 2 1 Dynamin family GTP_EFTU PF00009.27 AJD67317.1 - 0.011 15.3 0.0 0.12 11.9 0.0 2.0 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Myosin_N PF02736.19 AJD67317.1 - 0.043 13.7 0.2 0.068 13.0 0.2 1.3 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain VEG PF06257.11 AJD67317.1 - 0.1 12.7 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Biofilm formation stimulator VEG DUF3903 PF13043.6 AJD67317.1 - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) SRPRB PF09439.10 AJD67317.1 - 0.2 11.1 0.0 0.37 10.2 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AdenylateSensor PF16579.5 AJD67317.1 - 0.2 12.1 0.0 0.33 11.4 0.0 1.3 1 0 0 1 1 1 0 Adenylate sensor of SNF1-like protein kinase Lactamase_B PF00753.27 AJD67318.1 - 8.4e-16 58.6 4.4 1.6e-15 57.7 4.4 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD67318.1 - 1.3e-06 28.1 0.4 2.5e-06 27.2 0.4 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_18 PF12833.7 AJD67319.1 - 4.7e-12 46.0 0.6 8.8e-12 45.1 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD67319.1 - 1.8e-07 31.1 0.0 3.2e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.6 AJD67319.1 - 0.0035 17.1 3.8 0.036 13.9 1.1 2.6 2 0 0 2 2 2 1 Homeodomain-like domain GCS2 PF04107.13 AJD67320.1 - 7.9e-93 311.0 0.0 1.1e-92 310.5 0.0 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) WW_1 PF18507.1 AJD67320.1 - 0.14 11.9 0.3 0.14 11.9 0.3 1.6 2 0 0 2 2 2 0 WW domain HATPase_c PF02518.26 AJD67321.1 - 1.3e-19 70.7 0.0 8.2e-19 68.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AJD67321.1 - 5.5e-07 29.9 0.3 1.5e-06 28.5 0.3 1.8 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 AJD67321.1 - 6.9e-05 22.8 0.4 0.00027 20.9 0.2 2.2 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD67321.1 - 0.02 14.7 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD67322.1 - 1.2e-28 99.5 0.0 1.7e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD67322.1 - 1.8e-22 79.2 0.1 4.8e-22 77.8 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal MTD PF01993.18 AJD67322.1 - 0.074 12.4 0.0 0.15 11.4 0.0 1.5 1 1 1 2 2 2 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Colipase PF01114.18 AJD67322.1 - 0.2 11.4 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Colipase, N-terminal domain Glycos_transf_1 PF00534.20 AJD67323.1 - 2.7e-07 30.3 0.0 8.1e-07 28.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD67323.1 - 3e-06 27.7 0.0 6.5e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 AJD67323.1 - 0.022 15.2 0.1 0.056 13.8 0.1 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF3055 PF11256.8 AJD67323.1 - 0.19 12.0 0.0 20 5.5 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3055) Trns_repr_metal PF02583.17 AJD67325.1 - 1.5e-19 70.1 1.8 1.6e-19 70.0 1.8 1.0 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor ADH_N PF08240.12 AJD67326.1 - 1.2e-25 89.6 1.4 1.2e-25 89.6 1.4 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AJD67326.1 - 5e-23 81.5 0.2 8.1e-23 80.8 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AJD67326.1 - 1.5e-05 26.1 0.0 2.9e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 AJD67326.1 - 9e-05 22.1 0.0 0.00022 20.8 0.0 1.6 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus Met_10 PF02475.16 AJD67326.1 - 0.039 13.7 0.1 0.099 12.4 0.1 1.6 1 1 0 1 1 1 0 Met-10+ like-protein CLLAC PF15675.5 AJD67326.1 - 1.5 8.4 3.5 2.7 7.6 3.5 1.3 1 0 0 1 1 1 0 CLLAC-motif containing domain GFA PF04828.14 AJD67327.1 - 3.7e-10 40.0 0.3 3.7e-10 40.0 0.3 1.6 2 0 0 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Esterase PF00756.20 AJD67328.1 - 6.4e-67 225.8 0.0 7.5e-67 225.6 0.0 1.0 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 AJD67328.1 - 9.2e-08 31.6 0.2 8.5e-07 28.5 0.1 2.2 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Esterase_phd PF10503.9 AJD67328.1 - 1.9e-05 24.2 0.2 0.00015 21.3 0.2 2.0 1 1 0 1 1 1 1 Esterase PHB depolymerase Peptidase_S9 PF00326.21 AJD67328.1 - 9.1e-05 22.0 0.1 0.00013 21.5 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Chlorophyllase2 PF12740.7 AJD67328.1 - 0.00061 18.8 0.0 0.001 18.1 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 AJD67328.1 - 0.0026 16.8 0.1 0.02 13.9 0.1 2.0 1 1 0 1 1 1 1 Chlorophyllase DLH PF01738.18 AJD67328.1 - 0.097 12.2 0.2 0.2 11.2 0.2 1.6 1 1 0 1 1 1 0 Dienelactone hydrolase family NHR2 PF08788.11 AJD67328.1 - 0.14 11.9 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 NHR2 domain like Peptidase_S15 PF02129.18 AJD67328.1 - 0.15 11.6 1.7 0.18 11.3 0.5 1.7 2 1 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Aminotran_1_2 PF00155.21 AJD67329.1 - 4.4e-38 131.4 0.0 5.5e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 AJD67329.1 - 1.6e-14 53.3 0.7 1.6e-14 53.3 0.7 2.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Aminotran_5 PF00266.19 AJD67329.1 - 0.00083 18.4 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V HTH_41 PF14502.6 AJD67329.1 - 0.027 14.2 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_MocR PF12897.7 AJD67329.1 - 0.044 12.6 0.0 0.077 11.8 0.0 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase MbeB_N PF04837.12 AJD67329.1 - 0.047 14.0 0.2 0.11 12.8 0.2 1.6 1 0 0 1 1 1 0 MbeB-like, N-term conserved region DegT_DnrJ_EryC1 PF01041.17 AJD67329.1 - 0.098 12.0 0.2 0.19 11.0 0.2 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PhzC-PhzF PF02567.16 AJD67330.1 - 1.3e-48 165.9 0.2 2.1e-48 165.2 0.2 1.3 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein Porin_8 PF16966.5 AJD67330.1 - 0.095 11.6 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Porin-like glycoporin RafY EamA PF00892.20 AJD67331.1 - 1.5e-28 99.7 30.1 5.3e-15 55.8 17.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family UAA PF08449.11 AJD67331.1 - 0.1 11.8 7.9 0.057 12.6 2.5 2.3 2 1 0 2 2 2 0 UAA transporter family ABC_tran PF00005.27 AJD67333.1 - 4.1e-55 186.1 0.4 1.1e-28 100.4 0.0 2.7 3 0 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 AJD67333.1 - 4.2e-17 62.9 3.8 3.4e-05 23.8 0.0 4.4 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_Xtn PF12848.7 AJD67333.1 - 7.5e-13 48.3 8.3 2.3e-11 43.5 3.9 2.5 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 AJD67333.1 - 2.1e-07 30.6 2.4 0.24 10.8 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 AJD67333.1 - 2.6e-05 24.3 0.2 0.02 15.0 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_29 PF13555.6 AJD67333.1 - 7.9e-05 22.3 1.9 0.043 13.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD67333.1 - 0.00038 20.7 0.3 0.084 13.1 0.0 3.3 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 AJD67333.1 - 0.00067 19.6 0.0 0.096 12.6 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 AJD67333.1 - 0.0008 20.0 1.3 0.0061 17.1 0.8 3.4 2 1 0 3 3 2 2 AAA domain AAA_33 PF13671.6 AJD67333.1 - 0.0013 18.9 0.2 0.6 10.3 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 AJD67333.1 - 0.0024 18.4 0.6 4.9 7.7 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA_25 PF13481.6 AJD67333.1 - 0.0025 17.4 0.2 5.8 6.4 0.0 3.5 3 0 0 3 3 3 1 AAA domain MeaB PF03308.16 AJD67333.1 - 0.0066 15.5 0.2 1.6 7.7 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 AJD67333.1 - 0.0078 16.4 2.8 2.1 8.6 0.0 3.9 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Dynamin_N PF00350.23 AJD67333.1 - 0.01 15.9 2.1 0.31 11.1 0.0 2.9 3 0 0 3 3 3 0 Dynamin family AAA_24 PF13479.6 AJD67333.1 - 0.011 15.5 0.2 2.3 7.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 AJD67333.1 - 0.019 14.7 1.0 2.4 7.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 AJD67333.1 - 0.023 13.9 0.7 0.42 9.7 0.0 2.7 3 0 0 3 3 3 0 NB-ARC domain AAA_27 PF13514.6 AJD67333.1 - 0.023 14.3 0.1 2.8 7.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 AJD67333.1 - 0.029 14.6 0.1 5.1 7.3 0.0 2.9 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 AJD67333.1 - 0.031 13.7 0.1 0.68 9.4 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_16 PF13191.6 AJD67333.1 - 0.045 14.1 3.4 4.4 7.6 0.0 2.8 2 1 0 2 2 2 0 AAA ATPase domain cobW PF02492.19 AJD67333.1 - 0.099 12.2 0.6 1.8 8.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 AJD67333.1 - 0.11 12.9 0.1 2.1 8.8 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 AJD67333.1 - 0.13 12.5 1.3 4.3 7.6 0.0 3.0 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 AJD67333.1 - 0.18 11.9 0.0 4.4 7.3 0.0 3.0 4 0 0 4 4 4 0 AAA domain ATP-synt_ab PF00006.25 AJD67333.1 - 0.37 10.4 0.8 3 7.5 0.0 2.4 3 0 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 AJD67333.1 - 0.37 9.4 4.4 1.6 7.3 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_15 PF13175.6 AJD67333.1 - 5.3 6.6 9.0 2.7 7.6 0.2 2.9 2 1 1 3 3 3 0 AAA ATPase domain RcnB PF11776.8 AJD67334.1 - 3.5e-16 59.0 7.7 3.5e-16 59.0 7.7 3.6 1 1 1 2 2 2 1 Nickel/cobalt transporter regulator SHMT PF00464.19 AJD67335.1 - 5.1e-183 608.2 1.3 5.8e-183 608.0 1.3 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 AJD67335.1 - 1.8e-08 34.0 0.0 2.8e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AJD67335.1 - 7e-07 28.8 0.7 1.9e-06 27.4 0.9 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 AJD67335.1 - 0.0045 16.3 0.3 0.0064 15.8 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 AJD67335.1 - 0.036 12.8 0.1 0.18 10.5 0.1 1.9 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain ATP-cone PF03477.16 AJD67336.1 - 2.8e-14 53.4 0.0 4.4e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.7 AJD67336.1 - 0.011 15.7 1.9 0.024 14.6 1.9 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Elf1 PF05129.13 AJD67336.1 - 0.024 14.7 0.2 0.054 13.5 0.2 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 AJD67336.1 - 0.03 14.4 0.9 1.6 8.9 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-ZPR1 PF03367.13 AJD67336.1 - 0.19 11.6 0.4 0.34 10.7 0.4 1.4 1 1 0 1 1 1 0 ZPR1 zinc-finger domain Acetyltransf_1 PF00583.25 AJD67337.1 - 3.9e-13 49.7 0.0 4.6e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AJD67337.1 - 8.8e-13 48.3 0.0 1.2e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD67337.1 - 1.9e-10 41.0 0.0 2.7e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AJD67337.1 - 1.9e-05 24.8 0.0 2e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AJD67337.1 - 0.00062 19.8 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase NodA PF02474.15 AJD67337.1 - 0.0032 17.2 0.0 0.0044 16.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein A (NodA) FR47 PF08445.10 AJD67337.1 - 0.016 15.2 0.0 0.037 14.0 0.0 1.7 1 1 0 1 1 1 0 FR47-like protein Acetyltransf_3 PF13302.7 AJD67337.1 - 0.042 14.5 0.0 0.055 14.2 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain RibD_C PF01872.17 AJD67338.1 - 1.4e-48 165.4 0.1 1.7e-48 165.1 0.1 1.1 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 AJD67338.1 - 1e-18 67.1 0.0 1.9e-18 66.2 0.0 1.5 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 AJD67338.1 - 1e-09 38.2 0.0 1.7e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase OMP_b-brl PF13505.6 AJD67339.1 - 5.8e-07 29.8 6.4 1.6e-05 25.2 1.0 2.1 1 1 1 2 2 2 2 Outer membrane protein beta-barrel domain Porin_7 PF16956.5 AJD67339.1 - 0.047 13.3 0.1 0.076 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative general bacterial porin Lum_binding PF00677.17 AJD67340.1 - 1.3e-47 159.6 0.0 8.8e-25 86.5 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain Lactamase_B_2 PF12706.7 AJD67340.1 - 0.034 13.7 0.2 0.73 9.3 0.1 2.0 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DHBP_synthase PF00926.19 AJD67341.1 - 3.4e-81 271.4 0.0 7.2e-81 270.3 0.0 1.5 2 0 0 2 2 2 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 AJD67341.1 - 3.4e-29 101.5 0.0 5.7e-29 100.8 0.0 1.4 1 0 0 1 1 1 1 GTP cyclohydrolase II DMRL_synthase PF00885.19 AJD67342.1 - 6.9e-52 175.0 0.8 7.7e-52 174.9 0.8 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF4892 PF16234.5 AJD67342.1 - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4892) NusB PF01029.18 AJD67343.1 - 1.2e-33 116.2 0.2 1.4e-33 116.0 0.2 1.0 1 0 0 1 1 1 1 NusB family AIRS PF00586.24 AJD67344.1 - 1.3e-22 80.2 0.3 5.5e-22 78.2 0.3 2.1 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 AJD67344.1 - 1.3e-11 44.9 0.2 2e-11 44.3 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Peptidase_S15 PF02129.18 AJD67345.1 - 1.9e-35 122.8 0.2 3.4e-35 121.9 0.2 1.4 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.10 AJD67345.1 - 1.4e-13 51.4 0.1 2.8e-13 50.4 0.1 1.4 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S9 PF00326.21 AJD67345.1 - 6.1e-07 29.1 0.1 0.00022 20.8 0.2 2.4 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 AJD67345.1 - 0.00024 20.4 0.1 0.00045 19.6 0.1 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD67345.1 - 0.00034 20.3 0.5 0.0011 18.7 0.4 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.12 AJD67345.1 - 0.012 14.3 0.0 1.2 7.8 0.0 2.5 3 0 0 3 3 3 0 Acetyl xylan esterase (AXE1) BAAT_C PF08840.11 AJD67345.1 - 0.025 14.5 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal F-box PF00646.33 AJD67346.1 - 6.3e-05 22.7 0.0 0.00015 21.6 0.0 1.7 1 0 0 1 1 1 1 F-box domain HEAT_2 PF13646.6 AJD67346.1 - 0.032 14.6 0.6 0.032 14.6 0.6 2.5 2 0 0 2 2 2 0 HEAT repeats DnaB_bind PF10410.9 AJD67346.1 - 0.28 11.4 2.0 2.8 8.2 0.0 3.3 2 1 0 2 2 2 0 DnaB-helicase binding domain of primase Potass_KdpF PF09604.10 AJD67347.1 - 6.8e-11 41.9 4.2 7.8e-11 41.7 4.2 1.1 1 0 0 1 1 1 1 F subunit of K+-transporting ATPase (Potass_KdpF) CTV_P6 PF06706.11 AJD67347.1 - 0.019 14.7 0.1 0.02 14.5 0.1 1.0 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein KdpA PF03814.15 AJD67348.1 - 4.4e-210 698.5 23.9 6.3e-210 698.0 23.9 1.2 1 1 0 1 1 1 1 Potassium-transporting ATPase A subunit E1-E2_ATPase PF00122.20 AJD67349.1 - 8.1e-34 116.7 1.4 8.1e-34 116.7 1.4 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 AJD67349.1 - 8.4e-34 117.7 6.0 1.5e-33 116.9 6.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AJD67349.1 - 0.00012 21.9 2.3 0.0025 17.6 0.9 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AJD67349.1 - 0.0023 18.3 0.1 0.013 15.9 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase KdpC PF02669.15 AJD67350.1 - 4.4e-61 205.9 0.2 5.2e-61 205.7 0.2 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain LppA PF16708.5 AJD67350.1 - 0.064 13.2 0.5 0.14 12.0 0.2 1.7 1 1 1 2 2 2 0 Lipoprotein confined to pathogenic Mycobacterium MCPsignal PF00015.21 AJD67350.1 - 0.21 11.4 1.0 0.42 10.4 0.3 1.7 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain KdpD PF02702.17 AJD67351.1 - 1.1e-93 312.5 0.0 1.8e-93 311.8 0.0 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 AJD67351.1 - 4.3e-23 81.2 15.9 8.8e-23 80.1 15.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c PF02518.26 AJD67351.1 - 2.4e-18 66.7 0.0 5.6e-18 65.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67351.1 - 1.7e-11 44.0 0.9 1.7e-11 44.0 0.9 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Usp PF00582.26 AJD67351.1 - 9.2e-07 29.5 4.9 6.8e-06 26.6 0.2 3.3 2 1 0 2 2 2 1 Universal stress protein family HATPase_c_3 PF13589.6 AJD67351.1 - 0.016 15.1 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD67351.1 - 0.032 14.2 0.0 0.08 12.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Wzy_C PF04932.15 AJD67351.1 - 0.21 11.2 1.1 0.4 10.3 1.1 1.4 1 0 0 1 1 1 0 O-Antigen ligase Response_reg PF00072.24 AJD67352.1 - 1.5e-28 99.2 0.0 2.1e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD67352.1 - 7.6e-22 77.2 0.0 7.1e-21 74.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal LprI PF07007.12 AJD67354.1 - 0.00024 21.7 4.1 0.00024 21.7 4.1 1.7 1 1 1 2 2 2 1 Lysozyme inhibitor LprI MOZ_SAS PF01853.18 AJD67354.1 - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family FAD-oxidase_C PF02913.19 AJD67355.1 - 3.3e-67 226.7 0.7 5.4e-67 226.1 0.7 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 AJD67355.1 - 6.5e-44 149.1 1.4 1.3e-43 148.1 1.4 1.5 1 0 0 1 1 1 1 FAD binding domain YdjM PF04307.14 AJD67356.1 - 2.5e-26 92.0 11.3 2.8e-26 91.8 11.3 1.0 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase UPF0102 PF02021.17 AJD67357.1 - 1.5e-21 76.4 0.0 2.1e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 LppC PF04348.13 AJD67358.1 - 3e-118 395.9 0.0 3.6e-118 395.7 0.0 1.0 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_6 PF13458.6 AJD67358.1 - 1.1e-17 64.7 10.1 1.1e-17 64.7 10.1 1.7 2 1 0 2 2 2 1 Periplasmic binding protein ANF_receptor PF01094.28 AJD67358.1 - 0.00031 20.0 0.0 0.00052 19.2 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region TP_methylase PF00590.20 AJD67359.1 - 1.6e-30 106.6 0.9 2.5e-30 106.0 0.9 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CcdB PF01845.17 AJD67360.1 - 0.0057 16.9 0.0 0.0058 16.8 0.0 1.0 1 0 0 1 1 1 1 CcdB protein CcdA PF07362.12 AJD67361.1 - 7.3e-13 48.8 0.6 8.9e-13 48.5 0.6 1.1 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA CcdB PF01845.17 AJD67361.1 - 0.16 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 CcdB protein TANGO2 PF05742.12 AJD67362.1 - 1.5e-52 179.1 0.0 1.7e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 Transport and Golgi organisation 2 PEPcase PF00311.17 AJD67362.1 - 0.35 8.9 0.0 0.42 8.6 0.0 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase MraZ PF02381.18 AJD67363.1 - 2.9e-24 84.8 0.0 3.1e-12 46.3 0.0 2.4 2 1 0 2 2 2 2 MraZ protein, putative antitoxin-like Methyltransf_5 PF01795.19 AJD67364.1 - 1.6e-99 333.4 0.0 1.8e-99 333.2 0.0 1.0 1 0 0 1 1 1 1 MraW methylase family Ubie_methyltran PF01209.18 AJD67364.1 - 0.024 14.0 0.0 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 AJD67364.1 - 0.11 12.3 0.0 12 5.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain FtsL PF04999.13 AJD67365.1 - 2e-24 85.4 0.3 2.2e-24 85.3 0.3 1.0 1 0 0 1 1 1 1 Cell division protein FtsL DivIC PF04977.15 AJD67365.1 - 0.00086 19.0 0.0 0.00093 18.9 0.0 1.1 1 0 0 1 1 1 1 Septum formation initiator CLLAC PF15675.5 AJD67365.1 - 0.0013 18.2 0.9 0.0017 17.8 0.9 1.2 1 0 0 1 1 1 1 CLLAC-motif containing domain Transpeptidase PF00905.22 AJD67366.1 - 7.9e-81 271.6 1.8 1e-80 271.2 1.8 1.2 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 AJD67366.1 - 1.1e-21 78.0 0.0 5e-20 72.6 0.0 2.4 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain PetG PF02529.15 AJD67366.1 - 0.12 12.2 0.2 0.3 11.0 0.2 1.6 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 MttA_Hcf106 PF02416.16 AJD67366.1 - 0.16 11.3 0.1 0.36 10.2 0.1 1.6 1 0 0 1 1 1 0 mttA/Hcf106 family Mur_ligase_M PF08245.12 AJD67367.1 - 3.8e-49 167.3 0.0 6.5e-49 166.5 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AJD67367.1 - 1.7e-20 73.1 0.1 1.9e-19 69.7 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 AJD67367.1 - 1.8e-10 41.0 1.2 6.6e-10 39.2 0.2 2.5 3 0 0 3 3 3 1 Mur ligase family, catalytic domain Mur_ligase_M PF08245.12 AJD67368.1 - 1.9e-43 148.7 0.0 3.2e-43 148.0 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AJD67368.1 - 1.3e-10 41.4 0.1 2.9e-10 40.3 0.1 1.6 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 AJD67368.1 - 1.3e-08 35.0 2.7 1.7e-08 34.7 0.1 2.6 3 0 0 3 3 3 1 Mur ligase family, catalytic domain DUF3693 PF12472.8 AJD67368.1 - 0.21 11.3 2.7 0.59 9.8 2.7 1.8 1 0 0 1 1 1 0 Phage related protein Glycos_transf_4 PF00953.21 AJD67369.1 - 1.6e-33 115.9 17.8 1.6e-33 115.9 17.8 2.1 3 0 0 3 3 3 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 AJD67369.1 - 0.0011 18.4 0.7 0.0011 18.4 0.7 2.7 2 0 0 2 2 2 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PrgI PF12666.7 AJD67369.1 - 0.39 11.5 0.1 0.39 11.5 0.1 4.8 3 1 3 6 6 6 0 PrgI family protein TLV_coat PF00429.19 AJD67369.1 - 0.39 9.3 1.5 0.54 8.9 1.5 1.1 1 0 0 1 1 1 0 ENV polyprotein (coat polyprotein) FTSW_RODA_SPOVE PF01098.19 AJD67370.1 - 9.6e-99 330.8 23.8 1.1e-98 330.5 23.8 1.0 1 0 0 1 1 1 1 Cell cycle protein Glyco_transf_28 PF03033.20 AJD67371.1 - 1.7e-40 138.3 0.1 3.8e-40 137.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_tran_28_C PF04101.16 AJD67371.1 - 9.9e-40 136.2 0.1 1.4e-39 135.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 AJD67371.1 - 0.0039 17.2 0.4 0.011 15.7 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Mur_ligase_M PF08245.12 AJD67372.1 - 7.2e-28 97.9 0.0 1e-27 97.4 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase PF01225.25 AJD67372.1 - 1.2e-27 96.1 0.1 6.7e-27 93.6 0.1 2.2 2 0 0 2 2 2 1 Mur ligase family, catalytic domain Mur_ligase_C PF02875.21 AJD67372.1 - 6.7e-19 67.9 0.0 2.8e-18 66.0 0.0 2.0 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Dala_Dala_lig_C PF07478.13 AJD67373.1 - 9.6e-56 188.6 0.0 1.2e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 AJD67373.1 - 2e-17 63.5 1.2 2e-15 57.1 1.2 2.4 1 1 0 1 1 1 1 D-ala D-ala ligase N-terminus CPSase_L_D2 PF02786.17 AJD67373.1 - 6.1e-09 35.7 0.0 2.1e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 AJD67373.1 - 3.2e-07 30.1 0.0 2.8e-06 27.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 AJD67373.1 - 2.4e-06 27.7 0.0 3.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 AJD67373.1 - 0.00012 21.7 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 AJD67373.1 - 0.0036 16.6 0.0 0.18 11.0 0.0 2.5 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp RimK PF08443.11 AJD67373.1 - 0.011 15.3 0.0 0.087 12.4 0.0 2.0 1 1 0 1 1 1 0 RimK-like ATP-grasp domain FtsQ PF03799.15 AJD67374.1 - 8.5e-22 78.2 0.1 1.6e-21 77.3 0.1 1.5 1 0 0 1 1 1 1 Cell division protein FtsQ POTRA_1 PF08478.10 AJD67374.1 - 1e-18 67.4 0.0 1.7e-18 66.7 0.0 1.4 1 0 0 1 1 1 1 POTRA domain, FtsQ-type FtsA PF14450.6 AJD67375.1 - 1.9e-37 127.8 1.0 7.7e-24 84.1 0.0 2.1 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 AJD67375.1 - 7e-29 100.1 0.6 1.2e-28 99.3 0.1 1.8 2 0 0 2 2 2 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 AJD67375.1 - 1.8e-16 59.9 1.4 2.6e-15 56.1 0.9 2.3 2 0 0 2 2 2 1 MreB/Mbl protein PilM_2 PF11104.8 AJD67375.1 - 1.2e-06 27.8 0.4 0.001 18.2 0.0 3.1 3 0 0 3 3 3 1 Type IV pilus assembly protein PilM; EutA PF06277.11 AJD67375.1 - 1e-05 24.6 0.5 3e-05 23.1 0.0 1.9 2 1 0 2 2 2 1 Ethanolamine utilisation protein EutA DDR PF08841.10 AJD67375.1 - 0.0001 21.5 0.9 0.00022 20.3 0.9 1.5 1 0 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain Actin PF00022.19 AJD67375.1 - 0.0012 17.5 0.5 0.0052 15.5 0.0 2.0 2 1 0 3 3 3 1 Actin Hydantoinase_A PF01968.18 AJD67375.1 - 0.0065 15.8 0.2 0.02 14.2 0.0 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase DUF5027 PF16430.5 AJD67375.1 - 0.085 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5027) BcrAD_BadFG PF01869.20 AJD67375.1 - 0.1 12.1 2.4 2.9 7.3 0.1 2.3 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family SrfB PF07520.11 AJD67375.1 - 0.15 9.9 0.1 0.28 9.0 0.1 1.3 1 0 0 1 1 1 0 Virulence factor SrfB Tubulin PF00091.25 AJD67376.1 - 4e-40 138.1 1.3 7.9e-40 137.2 1.3 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 AJD67376.1 - 9.2e-39 131.7 2.0 3.1e-38 130.0 2.0 2.0 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 AJD67376.1 - 0.0029 17.5 1.7 0.016 15.1 0.2 2.8 2 1 0 2 2 2 1 NAD(P)H-binding Tubulin_2 PF13809.6 AJD67376.1 - 1.1 8.3 10.4 0.23 10.6 3.0 2.6 1 1 1 2 2 2 0 Tubulin like LpxC PF03331.13 AJD67377.1 - 4.6e-105 351.0 0.0 5.3e-105 350.8 0.0 1.0 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase DciA PF05258.12 AJD67378.1 - 1.3e-10 41.5 0.2 2e-10 40.9 0.2 1.3 1 0 0 1 1 1 1 Dna[CI] antecedent, DciA Peptidase_M23 PF01551.22 AJD67379.1 - 2.7e-32 110.8 3.1 2.7e-32 110.8 3.1 1.6 2 0 0 2 2 2 1 Peptidase family M23 RnfC_N PF13375.6 AJD67379.1 - 0.039 13.9 0.0 0.1 12.6 0.0 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain HalX PF08663.10 AJD67379.1 - 0.18 12.1 3.3 0.38 11.1 3.3 1.5 1 0 0 1 1 1 0 HalX domain DUF4763 PF15960.5 AJD67379.1 - 0.45 9.8 1.8 0.72 9.1 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) DivIC PF04977.15 AJD67379.1 - 0.46 10.3 5.8 7.7 6.4 3.3 2.8 2 1 1 3 3 3 0 Septum formation initiator MacB_PCD PF12704.7 AJD67379.1 - 0.61 10.4 5.8 0.2 12.0 1.4 2.0 1 1 1 2 2 2 0 MacB-like periplasmic core domain ABC_tran_CTD PF16326.5 AJD67379.1 - 3.8 7.8 8.0 1.3 9.3 5.3 1.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain SecA_DEAD PF07517.14 AJD67380.1 - 3.2e-134 446.7 0.0 7.3e-134 445.6 0.0 1.6 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.13 AJD67380.1 - 3.5e-64 216.5 6.4 6.6e-64 215.6 6.4 1.5 1 0 0 1 1 1 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 AJD67380.1 - 2.2e-38 131.3 0.6 1.1e-37 129.1 0.0 2.5 2 0 0 2 2 2 1 SecA preprotein cross-linking domain SEC-C PF02810.15 AJD67380.1 - 7.1e-11 41.8 9.6 1.2e-10 41.1 9.6 1.4 1 0 0 1 1 1 1 SEC-C motif DEAD PF00270.29 AJD67380.1 - 3.2e-06 27.0 0.0 9.5e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD67380.1 - 0.0047 17.3 0.8 0.075 13.4 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Cullin PF00888.22 AJD67380.1 - 0.035 12.7 1.4 0.059 12.0 1.4 1.3 1 0 0 1 1 1 0 Cullin family RDM PF11002.8 AJD67380.1 - 0.12 12.4 0.1 0.31 11.1 0.1 1.7 1 0 0 1 1 1 0 RFPL defining motif (RDM) EccE PF11203.8 AJD67380.1 - 0.19 12.1 1.3 0.71 10.2 0.2 2.6 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE TMP-TENI PF02581.17 AJD67381.1 - 1.2e-41 142.0 0.0 1.5e-41 141.7 0.0 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NUDIX PF00293.28 AJD67381.1 - 4.2e-19 68.9 0.2 8.2e-19 67.9 0.2 1.4 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 AJD67381.1 - 2e-15 56.7 0.0 5.2e-15 55.4 0.0 1.7 1 1 0 1 1 1 1 NUDIX domain FMN_dh PF01070.18 AJD67381.1 - 0.0015 17.6 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 AJD67381.1 - 0.029 13.8 0.0 0.089 12.2 0.0 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein DUF4124 PF13511.6 AJD67382.1 - 0.0072 16.6 0.0 0.0072 16.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4124) MTHFR PF02219.17 AJD67383.1 - 9.9e-87 290.9 0.0 1.1e-86 290.7 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Glyco_hydro_2_C PF02836.17 AJD67384.1 - 2.3e-05 23.6 0.0 3.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain DUF4434 PF14488.6 AJD67384.1 - 0.012 15.7 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) DUF4038 PF13204.6 AJD67384.1 - 0.037 13.7 0.0 0.047 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4038) ADH_zinc_N_2 PF13602.6 AJD67386.1 - 5.1e-29 102.0 0.8 1.4e-28 100.6 0.4 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 AJD67386.1 - 1.8e-25 89.4 2.9 3.1e-25 88.6 2.9 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD67386.1 - 7.7e-09 35.4 0.0 1.8e-07 31.0 0.0 2.3 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 AJD67386.1 - 0.0051 16.3 5.1 0.041 13.3 3.0 2.3 1 1 1 2 2 2 1 short chain dehydrogenase ADH_N_2 PF16884.5 AJD67386.1 - 0.069 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase Peptidase_S8 PF00082.22 AJD67387.1 - 3e-14 53.0 0.6 1.1e-12 47.9 0.0 2.2 1 1 1 2 2 2 2 Subtilase family Pro-kuma_activ PF09286.11 AJD67387.1 - 1.7e-10 41.4 0.0 2.8e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Glyoxalase PF00903.25 AJD67388.1 - 0.11 12.7 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GFO_IDH_MocA PF01408.22 AJD67389.1 - 1.5e-17 64.6 0.2 2.8e-17 63.6 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 AJD67389.1 - 0.011 16.3 0.1 0.017 15.6 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain Alpha-amylase PF00128.24 AJD67390.1 - 1.4e-10 41.3 0.0 2.2e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF2058 PF09831.9 AJD67391.1 - 8.3e-55 185.6 4.6 9.2e-55 185.5 4.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2058) DUF3228 PF11539.8 AJD67392.1 - 1.4e-58 197.6 0.0 1.6e-58 197.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3228) Sulfotransfer_4 PF17784.1 AJD67393.1 - 5e-55 186.6 0.0 8.6e-55 185.9 0.0 1.3 1 0 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 AJD67393.1 - 4.9e-05 23.8 0.0 0.00012 22.5 0.0 1.8 1 1 1 2 2 2 1 Sulfotransferase family ANF_receptor PF01094.28 AJD67394.1 - 0.12 11.5 0.0 0.12 11.5 0.0 1.0 1 0 0 1 1 1 0 Receptor family ligand binding region Sulfotransfer_1 PF00685.27 AJD67395.1 - 2.2e-40 138.8 0.0 2.9e-40 138.5 0.0 1.1 1 0 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 AJD67395.1 - 1.6e-06 28.7 0.3 0.0065 16.9 0.1 2.4 1 1 1 2 2 2 2 Sulfotransferase family Methyltransf_25 PF13649.6 AJD67396.1 - 7.9e-14 52.1 0.0 1.5e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD67396.1 - 6.6e-12 45.9 0.0 1.1e-11 45.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67396.1 - 2.3e-08 34.1 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67396.1 - 4e-07 29.9 0.0 5.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67396.1 - 9.3e-07 29.5 0.0 1.6e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 AJD67396.1 - 0.0051 16.2 0.0 0.0067 15.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB ALGX PF16822.5 AJD67396.1 - 0.094 12.4 1.7 5.4 6.6 0.4 2.3 2 0 0 2 2 2 0 SGNH hydrolase-like domain, acetyltransferase AlgX Methyltransf_9 PF08003.11 AJD67396.1 - 0.11 11.4 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) AdoHcyase PF05221.17 AJD67397.1 - 5e-147 488.8 0.0 5.7e-147 488.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 AJD67397.1 - 2.8e-81 271.3 2.1 5e-81 270.5 2.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 AJD67397.1 - 2.1e-09 37.0 0.2 3.7e-09 36.2 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 AJD67397.1 - 2.9e-05 23.7 0.5 6.4e-05 22.6 0.5 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 AJD67397.1 - 0.00071 20.0 0.2 0.002 18.5 0.2 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 AJD67397.1 - 0.00094 19.4 1.0 0.0034 17.6 0.3 2.3 2 1 0 2 2 2 1 TrkA-N domain THF_DHG_CYH_C PF02882.19 AJD67397.1 - 0.014 14.8 1.7 0.062 12.6 1.8 1.9 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 AJD67397.1 - 0.089 12.1 2.0 0.2 10.9 2.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 AJD67397.1 - 0.1 12.7 0.2 0.23 11.5 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Peptidase_S9 PF00326.21 AJD67398.1 - 1.5e-24 86.7 0.1 2.3e-24 86.1 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 AJD67398.1 - 6e-07 29.3 0.4 0.0017 18.0 0.2 2.3 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 AJD67398.1 - 0.00015 21.4 0.0 0.00025 20.7 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family PD40 PF07676.12 AJD67398.1 - 0.00085 19.2 0.1 0.13 12.2 0.0 3.0 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Hydrolase_4 PF12146.8 AJD67398.1 - 0.0019 17.5 1.7 0.061 12.6 0.1 2.7 2 1 0 3 3 3 1 Serine aminopeptidase, S33 PhoPQ_related PF10142.9 AJD67398.1 - 0.0073 15.0 0.0 0.011 14.4 0.0 1.1 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein Peptidase_S9_N PF02897.15 AJD67398.1 - 0.018 13.9 0.0 0.031 13.1 0.0 1.2 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_2 PF02230.16 AJD67398.1 - 0.11 12.3 0.0 0.26 11.1 0.0 1.5 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DPPIV_N PF00930.21 AJD67398.1 - 0.12 11.1 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region LIDHydrolase PF10230.9 AJD67398.1 - 0.26 10.8 0.0 0.43 10.1 0.0 1.2 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase PEPcase PF00311.17 AJD67399.1 - 2e-222 740.6 0.0 2.6e-222 740.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase TetR_N PF00440.23 AJD67400.1 - 1.7e-10 40.5 0.0 3.6e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF4105 PF13387.6 AJD67401.1 - 5.4e-44 149.8 0.0 1e-43 148.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4105) Wzy_C PF04932.15 AJD67401.1 - 0.075 12.7 0.2 0.1 12.2 0.2 1.4 1 0 0 1 1 1 0 O-Antigen ligase PigN PF04987.14 AJD67401.1 - 0.19 10.5 0.3 0.27 10.0 0.3 1.1 1 0 0 1 1 1 0 Phosphatidylinositolglycan class N (PIG-N) DUF4131 PF13567.6 AJD67401.1 - 1.1 8.8 5.3 0.3 10.7 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Abhydrolase_6 PF12697.7 AJD67402.1 - 4.9e-05 24.0 2.9 4.9e-05 24.0 2.9 2.8 2 1 0 2 2 2 1 Alpha/beta hydrolase family PGAP1 PF07819.13 AJD67402.1 - 0.0012 18.6 0.2 0.0059 16.4 0.5 2.0 2 1 0 2 2 2 1 PGAP1-like protein Abhydrolase_2 PF02230.16 AJD67402.1 - 0.0089 15.9 0.0 0.75 9.6 0.0 2.3 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DUF676 PF05057.14 AJD67402.1 - 0.027 14.0 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Hydrolase_4 PF12146.8 AJD67402.1 - 0.11 11.8 0.0 0.26 10.5 0.0 1.6 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Abhydro_lipase PF04083.16 AJD67402.1 - 0.16 11.5 0.1 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 Partial alpha/beta-hydrolase lipase region Abhydrolase_1 PF00561.20 AJD67402.1 - 0.56 9.8 2.8 1.6 8.3 0.6 2.6 2 2 1 3 3 3 0 alpha/beta hydrolase fold TonB_dep_Rec PF00593.24 AJD67403.1 - 8.4e-34 118.2 50.9 1.6e-33 117.3 28.6 3.0 1 1 2 3 3 3 2 TonB dependent receptor Plug PF07715.15 AJD67403.1 - 1.5e-19 70.5 3.1 5e-19 68.9 3.1 2.0 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD67403.1 - 2.6e-18 66.2 3.3 4.9e-18 65.3 0.1 2.2 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family His_Phos_2 PF00328.22 AJD67404.1 - 6.1e-15 55.5 0.0 5.4e-09 35.9 0.1 3.1 2 1 0 2 2 2 2 Histidine phosphatase superfamily (branch 2) Acetyltransf_6 PF13480.7 AJD67404.1 - 0.1 12.7 0.1 0.23 11.6 0.1 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain S-AdoMet_synt_C PF02773.16 AJD67405.1 - 5e-69 230.6 0.2 4.4e-68 227.6 0.1 2.3 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 AJD67405.1 - 1.8e-44 150.8 0.1 7.3e-44 148.9 0.0 2.0 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 AJD67405.1 - 4.6e-42 142.7 0.0 1.2e-41 141.4 0.0 1.7 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain YdjM PF04307.14 AJD67406.1 - 3.1e-26 91.7 14.5 4.7e-26 91.1 14.5 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Rick_17kDa_Anti PF05433.15 AJD67406.1 - 0.052 13.4 5.7 1.1 9.2 6.0 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain Methyltransf_11 PF08241.12 AJD67407.1 - 2.3e-21 76.2 0.0 4.2e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67407.1 - 1.4e-19 70.6 0.0 3.7e-19 69.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67407.1 - 3.6e-15 56.1 0.0 6.1e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67407.1 - 9.8e-15 55.1 0.0 2e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67407.1 - 4.7e-14 52.5 0.0 6.7e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AJD67407.1 - 5.6e-10 39.0 0.0 8.4e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 AJD67407.1 - 1.4e-06 27.8 0.0 1.9e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_33 PF10017.9 AJD67407.1 - 0.00075 18.7 0.0 0.001 18.3 0.0 1.2 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent MTS PF05175.14 AJD67407.1 - 0.00076 19.1 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 AJD67407.1 - 0.0038 17.0 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_PK PF05891.12 AJD67407.1 - 0.018 14.6 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase PolyA_pol_RNAbd PF12627.7 AJD67407.1 - 0.044 13.6 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A MetW PF07021.12 AJD67407.1 - 0.045 13.3 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.20 AJD67407.1 - 0.061 12.4 0.0 0.084 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 AJD67407.1 - 0.073 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 AJD67407.1 - 0.075 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_5 PF01795.19 AJD67407.1 - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family Dus PF01207.17 AJD67408.1 - 3e-104 348.4 0.0 3.5e-104 348.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) NanE PF04131.14 AJD67408.1 - 0.0001 21.6 0.6 0.00054 19.2 0.2 2.1 1 1 2 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 AJD67408.1 - 0.00039 19.7 0.0 0.047 12.9 0.0 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.14 AJD67408.1 - 0.00098 18.5 0.2 0.002 17.5 0.2 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 AJD67408.1 - 0.0045 16.3 0.2 0.017 14.5 0.1 1.9 2 0 0 2 2 2 1 Thiamine monophosphate synthase His_biosynth PF00977.21 AJD67408.1 - 0.0056 16.2 0.2 0.021 14.3 0.0 1.7 1 1 1 2 2 2 2 Histidine biosynthesis protein SOR_SNZ PF01680.17 AJD67408.1 - 0.016 15.0 1.6 0.44 10.3 0.3 2.2 1 1 1 2 2 2 0 SOR/SNZ family SAF PF08666.12 AJD67408.1 - 0.017 15.8 0.0 0.041 14.5 0.0 1.6 1 0 0 1 1 1 0 SAF domain Oxidored_FMN PF00724.20 AJD67408.1 - 0.023 14.0 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family Pterin_bind PF00809.22 AJD67408.1 - 0.039 13.6 0.4 0.16 11.6 0.0 2.2 3 0 0 3 3 3 0 Pterin binding enzyme IMPDH PF00478.25 AJD67408.1 - 0.047 12.7 0.1 0.08 11.9 0.1 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Hairy_orange PF07527.13 AJD67408.1 - 0.088 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Hairy Orange NMO PF03060.15 AJD67408.1 - 0.24 10.8 5.0 0.075 12.4 1.7 1.8 2 0 0 2 2 2 0 Nitronate monooxygenase Glyco_hydro_98M PF08306.11 AJD67409.1 - 4.2e-122 407.5 0.2 6.6e-122 406.9 0.2 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 98 Glyco_hydro_98C PF08307.11 AJD67409.1 - 3.2e-10 39.9 0.3 7.6e-10 38.7 0.2 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 98 C-terminal domain CBM_35 PF16990.5 AJD67409.1 - 4.4e-09 36.6 1.9 1.3e-08 35.1 0.5 2.4 2 1 1 3 3 3 1 Carbohydrate binding module (family 35) CBM_6 PF03422.15 AJD67409.1 - 0.00027 21.2 0.8 0.00027 21.2 0.8 2.9 3 0 0 3 3 3 1 Carbohydrate binding module (family 6) PA14 PF07691.12 AJD67409.1 - 0.047 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 PA14 domain BclA_C PF18573.1 AJD67409.1 - 0.067 13.1 0.3 0.067 13.1 0.3 2.4 3 0 0 3 3 3 0 BclA C-terminal domain PfkB PF00294.24 AJD67411.1 - 2.2e-46 158.5 3.9 2.5e-46 158.3 3.9 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 AJD67411.1 - 2e-06 27.4 0.2 3.3e-06 26.7 0.2 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 AJD67411.1 - 0.0066 15.9 0.3 0.017 14.6 0.1 1.6 1 1 0 1 1 1 1 Carbohydrate kinase Nucleos_tra2_C PF07662.13 AJD67412.1 - 6.6e-78 261.3 6.4 6.6e-78 261.3 6.4 2.2 2 1 0 2 2 2 1 Na+ dependent nucleoside transporter C-terminus Nucleos_tra2_N PF01773.20 AJD67412.1 - 3.9e-25 88.2 4.9 3.9e-25 88.2 4.9 3.1 3 0 0 3 3 3 1 Na+ dependent nucleoside transporter N-terminus Gate PF07670.14 AJD67412.1 - 2.2e-07 31.2 7.6 2.2e-07 31.2 7.6 2.9 3 0 0 3 3 3 2 Nucleoside recognition SdiA-regulated PF06977.11 AJD67412.1 - 0.14 11.3 0.0 0.22 10.7 0.0 1.1 1 0 0 1 1 1 0 SdiA-regulated Aldo_ket_red PF00248.21 AJD67413.1 - 2.7e-71 240.2 0.0 3.2e-71 239.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family hemP PF10636.9 AJD67414.1 - 2.5e-18 65.6 1.4 3.3e-18 65.2 1.4 1.2 1 0 0 1 1 1 1 Hemin uptake protein hemP TonB_dep_Rec PF00593.24 AJD67415.1 - 1.8e-57 196.3 27.9 1.8e-57 196.3 27.9 2.0 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AJD67415.1 - 6.3e-28 97.5 2.0 9.3e-28 96.9 0.6 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD67415.1 - 6.9e-07 28.6 0.0 9.9e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family HemS PF05171.12 AJD67416.1 - 0.0032 17.4 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 Haemin-degrading HemS.ChuX domain ChuX_HutX PF06228.13 AJD67416.1 - 0.063 13.1 0.0 0.91 9.3 0.0 2.5 3 1 1 4 4 4 0 Haem utilisation ChuX/HutX DMT_6 PF04342.12 AJD67419.1 - 3.3e-45 152.6 5.3 3.7e-45 152.4 5.3 1.0 1 0 0 1 1 1 1 Putative member of DMT superfamily (DUF486) EamA PF00892.20 AJD67419.1 - 0.51 10.5 12.9 1.6 8.9 12.9 1.9 1 1 0 1 1 1 0 EamA-like transporter family BPD_transp_1 PF00528.22 AJD67420.1 - 5.7e-16 58.8 14.7 9.5e-16 58.1 14.7 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 AJD67421.1 - 1.5e-31 109.8 0.0 2.8e-31 108.9 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 AJD67421.1 - 1.2e-07 31.9 0.3 0.015 15.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 AJD67421.1 - 1e-05 26.0 0.2 0.00034 21.1 0.2 2.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AJD67421.1 - 2.2e-05 24.9 0.1 3.9e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD67421.1 - 4.4e-05 23.1 0.0 0.0001 22.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD67421.1 - 0.00012 22.3 0.0 0.00024 21.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 AJD67421.1 - 0.00026 20.5 0.0 0.48 9.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 AJD67421.1 - 0.00038 20.7 1.4 0.0034 17.7 0.4 2.5 2 1 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 AJD67421.1 - 0.0011 18.9 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 AJD67421.1 - 0.005 15.7 0.0 0.15 10.9 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_33 PF13671.6 AJD67421.1 - 0.016 15.4 0.9 0.13 12.4 0.9 2.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AJD67421.1 - 0.016 14.8 0.2 0.052 13.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 AJD67421.1 - 0.019 14.9 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 AJD67421.1 - 0.025 14.3 0.0 0.11 12.1 0.0 2.0 2 1 1 3 3 3 0 AAA domain DUF815 PF05673.13 AJD67421.1 - 0.031 13.4 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 AJD67421.1 - 0.033 13.6 0.0 0.082 12.3 0.0 1.7 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 AJD67421.1 - 0.034 14.6 0.0 0.054 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 AJD67421.1 - 0.041 13.6 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 AJD67421.1 - 0.041 13.9 0.1 0.094 12.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 AJD67421.1 - 0.044 13.7 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 1 0 NACHT domain DAP3 PF10236.9 AJD67421.1 - 0.087 12.0 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 T2SSE PF00437.20 AJD67421.1 - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.6 AJD67421.1 - 0.16 12.2 0.3 0.74 10.1 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 AJD67421.1 - 0.18 12.2 0.0 0.28 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase G-alpha PF00503.20 AJD67421.1 - 0.18 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 AJD67421.1 - 0.24 11.1 0.0 0.47 10.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain NMT1_2 PF13379.6 AJD67422.1 - 4e-21 75.9 0.1 5.3e-21 75.5 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 AJD67422.1 - 1.7e-07 31.4 0.0 3.9e-07 30.2 0.0 1.6 1 1 0 1 1 1 1 NMT1/THI5 like Lipoprotein_9 PF03180.14 AJD67422.1 - 0.019 14.1 0.0 0.044 12.9 0.0 1.5 1 0 0 1 1 1 0 NLPA lipoprotein TauD PF02668.16 AJD67423.1 - 3.6e-68 230.3 5.1 4.4e-68 230.0 5.1 1.0 1 0 0 1 1 1 1 Taurine catabolism dioxygenase TauD, TfdA family FtsX PF02687.21 AJD67424.1 - 3.6e-16 59.4 4.7 7.6e-10 39.1 0.5 5.5 6 1 0 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 AJD67424.1 - 1.9e-10 41.4 0.7 0.00047 20.6 0.0 2.8 2 0 0 2 2 2 2 MacB-like periplasmic core domain COX8 PF02285.15 AJD67424.1 - 6.8 6.7 7.1 0.45 10.4 1.1 2.2 2 0 0 2 2 2 0 Cytochrome oxidase c subunit VIII ABC_tran PF00005.27 AJD67425.1 - 2.6e-31 109.0 0.0 3.3e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD67425.1 - 8.9e-06 25.7 2.7 0.019 14.8 1.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AJD67425.1 - 0.0002 21.8 2.8 0.0004 20.8 2.9 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 AJD67425.1 - 0.00062 19.3 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AJD67425.1 - 0.003 17.9 0.8 0.031 14.5 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD67425.1 - 0.0042 16.8 0.8 0.0071 16.1 0.8 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 AJD67425.1 - 0.006 16.8 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 AJD67425.1 - 0.013 15.2 0.1 0.022 14.4 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.22 AJD67425.1 - 0.035 13.7 0.1 0.061 12.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 AJD67425.1 - 0.042 14.4 0.0 0.078 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AJD67425.1 - 0.063 13.0 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AJD67425.1 - 0.088 12.7 0.5 0.17 11.8 0.5 1.4 1 0 0 1 1 1 0 NACHT domain bPH_6 PF10756.9 AJD67425.1 - 0.088 12.9 2.3 0.26 11.4 0.1 2.5 2 1 0 2 2 2 0 Bacterial PH domain MobB PF03205.14 AJD67425.1 - 0.098 12.6 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 AJD67425.1 - 0.11 12.4 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase FtsK_SpoIIIE PF01580.18 AJD67425.1 - 0.12 11.7 0.6 0.65 9.3 0.5 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 AJD67425.1 - 0.16 11.5 3.1 0.5 9.9 0.7 2.2 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 AJD67425.1 - 0.17 10.7 0.9 0.2 10.4 0.1 1.5 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) DUF87 PF01935.17 AJD67425.1 - 0.18 11.9 0.5 0.34 11.0 0.5 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_23 PF13476.6 AJD67425.1 - 0.21 12.1 0.4 0.33 11.4 0.4 1.2 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 AJD67425.1 - 0.22 11.0 0.5 0.41 10.0 0.2 1.5 2 0 0 2 2 2 0 Poxvirus A32 protein Dynamin_N PF00350.23 AJD67425.1 - 0.22 11.5 0.5 0.35 10.9 0.5 1.3 1 0 0 1 1 1 0 Dynamin family AAA_24 PF13479.6 AJD67425.1 - 0.25 11.1 0.1 0.4 10.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AJD67425.1 - 0.25 11.5 1.1 0.34 11.1 1.0 1.7 1 1 0 1 1 1 0 AAA domain Lipase_GDSL_2 PF13472.6 AJD67426.1 - 2.7e-20 73.5 0.0 3.4e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 AJD67426.1 - 3.1e-08 33.8 0.0 4.7e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase OSK PF17182.4 AJD67426.1 - 0.033 13.4 0.0 0.042 13.1 0.0 1.1 1 0 0 1 1 1 0 OSK domain Response_reg PF00072.24 AJD67427.1 - 2.9e-29 101.5 0.0 1.2e-28 99.5 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD67427.1 - 9.4e-18 64.1 0.9 1.7e-17 63.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 AJD67428.1 - 1.2e-18 67.6 0.0 2e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67428.1 - 1.2e-11 44.4 1.8 3e-11 43.2 1.8 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD67428.1 - 0.00028 20.7 0.0 0.00044 20.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Rx_N PF18052.1 AJD67428.1 - 0.0062 16.8 0.9 0.012 15.9 0.9 1.4 1 0 0 1 1 1 1 Rx N-terminal domain HATPase_c_2 PF13581.6 AJD67428.1 - 0.06 13.3 0.0 0.2 11.6 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Lipase_GDSL_2 PF13472.6 AJD67429.1 - 2.5e-15 57.3 0.1 4e-15 56.7 0.1 1.3 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 AJD67429.1 - 6.8e-05 22.9 0.0 8.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase OSK PF17182.4 AJD67429.1 - 0.095 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 OSK domain DAGK_prokar PF01219.19 AJD67430.1 - 7.4e-33 112.4 0.7 8.6e-33 112.2 0.7 1.0 1 0 0 1 1 1 1 Prokaryotic diacylglycerol kinase LemA PF04011.12 AJD67431.1 - 3.7e-59 198.8 1.8 4.5e-59 198.6 1.8 1.1 1 0 0 1 1 1 1 LemA family LPAM_2 PF13627.6 AJD67431.1 - 0.085 12.7 3.0 0.13 12.2 3.0 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site TPM_phosphatase PF04536.14 AJD67432.1 - 1.6e-36 125.2 0.1 2e-36 124.9 0.1 1.1 1 0 0 1 1 1 1 TPM domain MOLO1 PF17175.4 AJD67432.1 - 0.3 11.2 0.0 0.42 10.8 0.0 1.2 1 0 0 1 1 1 0 Modulator of levamisole receptor-1 TPM_phosphatase PF04536.14 AJD67433.1 - 1.9e-14 53.9 0.0 2.3e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 TPM domain LGT PF01790.18 AJD67434.1 - 9.6e-76 254.2 11.9 1.1e-75 254.0 11.9 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase Thymidylat_synt PF00303.19 AJD67435.1 - 1.1e-121 405.1 0.0 1.2e-121 405.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DHFR_1 PF00186.19 AJD67437.1 - 2.4e-52 176.9 0.0 2.7e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Sigma54_activat PF00158.26 AJD67438.1 - 2.6e-67 225.7 0.0 4e-67 225.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AJD67438.1 - 1.1e-18 67.7 0.0 2.2e-18 66.7 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 AJD67438.1 - 7.9e-08 32.4 0.0 1.6e-07 31.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AJD67438.1 - 8.8e-05 23.0 0.1 0.00023 21.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain HTH_8 PF02954.19 AJD67438.1 - 0.00022 20.9 0.1 0.00048 19.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA PF00004.29 AJD67438.1 - 0.00055 20.4 0.0 0.0012 19.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 AJD67438.1 - 0.00055 19.4 0.2 0.7 9.2 0.0 3.0 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 AJD67438.1 - 0.02 15.2 0.0 0.084 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain HTH_30 PF13556.6 AJD67438.1 - 0.041 13.7 0.6 0.041 13.7 0.6 1.8 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain AAA_7 PF12775.7 AJD67438.1 - 0.06 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_3 PF07726.11 AJD67438.1 - 0.089 12.7 0.0 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 AJD67438.1 - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 KaiC MCM PF00493.23 AJD67438.1 - 0.17 11.0 0.0 0.31 10.1 0.0 1.4 1 0 0 1 1 1 0 MCM P-loop domain Acyl-CoA_dh_2 PF08028.11 AJD67439.1 - 1.3e-14 54.6 4.3 1.3e-14 54.6 4.3 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AJD67439.1 - 2.3e-13 50.8 0.4 1.2e-12 48.4 0.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AJD67439.1 - 1.2e-09 38.5 2.9 2.2e-09 37.7 2.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AJD67439.1 - 4.5e-06 26.8 0.0 1.1e-05 25.5 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain ABC_tran PF00005.27 AJD67440.1 - 4.4e-33 114.7 0.0 6.1e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD67440.1 - 1.6e-07 31.4 0.3 0.00065 19.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AJD67440.1 - 2.7e-05 24.6 3.9 6.8e-05 23.3 3.9 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 AJD67440.1 - 0.00013 22.1 0.0 0.0014 18.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD67440.1 - 0.00021 21.5 0.0 0.0011 19.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AJD67440.1 - 0.0004 20.3 0.0 0.00076 19.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 AJD67440.1 - 0.0006 20.1 0.4 0.0017 18.6 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AJD67440.1 - 0.0072 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 AJD67440.1 - 0.015 15.2 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 AJD67440.1 - 0.027 14.0 0.1 0.26 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 AJD67440.1 - 0.035 14.7 0.0 0.065 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 AJD67440.1 - 0.086 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.6 AJD67440.1 - 0.086 13.1 0.2 0.52 10.6 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 AJD67440.1 - 0.094 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 AJD67440.1 - 0.12 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 AJD67440.1 - 0.13 12.7 0.0 0.42 11.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 AJD67440.1 - 0.15 12.0 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 AJD67440.1 - 0.17 11.9 0.1 0.42 10.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 AJD67440.1 - 0.21 11.0 0.0 18 4.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 AJD67440.1 - 0.22 11.2 0.0 0.31 10.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 AJD67441.1 - 8.3e-29 100.6 6.3 1.5e-28 99.8 6.3 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NMT1 PF09084.11 AJD67442.1 - 1.8e-20 73.8 0.0 3.3e-20 73.0 0.0 1.3 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 AJD67442.1 - 3.5e-07 30.1 0.0 5.7e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 AJD67442.1 - 3.4e-06 26.9 0.0 8.6e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 AJD67442.1 - 3.5e-05 23.3 0.0 4.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 AJD67442.1 - 0.00031 20.3 0.0 0.00062 19.3 0.0 1.4 1 1 0 1 1 1 1 NMT1-like family TAT_signal PF10518.9 AJD67442.1 - 0.039 13.8 0.5 0.039 13.8 0.5 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Bac_luciferase PF00296.20 AJD67443.1 - 2.6e-84 283.3 9.3 3e-84 283.1 9.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase FMN_red PF03358.15 AJD67444.1 - 8e-30 103.6 0.0 9.7e-30 103.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 AJD67444.1 - 5.1e-08 32.9 0.0 8.9e-08 32.1 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold TonB_dep_Rec PF00593.24 AJD67445.1 - 1.5e-31 110.8 41.8 1.5e-31 110.8 41.8 1.9 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD67445.1 - 2.4e-12 47.4 1.4 6.1e-12 46.1 1.4 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Acyl-CoA_dh_2 PF08028.11 AJD67447.1 - 2.6e-11 43.9 7.4 7.4e-11 42.4 7.4 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AJD67447.1 - 7.6e-08 32.5 0.0 1.9e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 AJD67447.1 - 0.001 19.7 0.1 0.0022 18.6 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AJD67447.1 - 0.015 15.5 1.8 0.095 12.9 1.8 2.2 1 1 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain DprA_WH PF17782.1 AJD67447.1 - 0.86 9.8 6.6 0.11 12.6 0.8 2.5 3 0 0 3 3 3 0 DprA winged helix domain Bac_luciferase PF00296.20 AJD67448.1 - 2e-56 191.7 5.1 3.8e-56 190.8 4.9 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase DSS1_SEM1 PF05160.13 AJD67448.1 - 0.31 11.1 1.4 0.66 10.1 1.4 1.4 1 0 0 1 1 1 0 DSS1/SEM1 family SBP_bac_5 PF00496.22 AJD67449.1 - 2.8e-78 263.5 0.0 3.7e-78 263.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 AJD67450.1 - 1.3e-30 106.5 11.1 1.3e-30 106.5 11.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 AJD67451.1 - 1.7e-30 106.1 12.0 1.7e-30 106.1 12.0 1.8 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 AJD67453.1 - 1.2e-40 139.2 0.0 4e-28 98.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 AJD67453.1 - 3e-13 50.1 0.1 5.8e-06 26.7 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AJD67453.1 - 4.2e-09 36.6 1.4 0.0031 17.4 0.0 3.1 3 0 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD67453.1 - 3.9e-07 29.7 0.3 0.00046 19.7 0.2 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AJD67453.1 - 3.2e-05 24.2 0.0 0.00058 20.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 AJD67453.1 - 0.00079 19.6 1.2 0.019 15.2 0.2 3.2 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 AJD67453.1 - 0.0012 19.3 4.8 0.0012 19.3 4.8 2.6 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD67453.1 - 0.02 14.8 0.1 0.041 13.8 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 AJD67453.1 - 0.022 14.7 0.5 1.1 9.2 0.1 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 AJD67453.1 - 0.035 14.3 0.1 8.4 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 AJD67453.1 - 0.058 13.5 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Sigma54_activat PF00158.26 AJD67453.1 - 0.089 12.5 1.0 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_25 PF13481.6 AJD67453.1 - 0.13 11.8 6.9 0.22 11.1 3.6 2.7 2 1 0 2 2 2 0 AAA domain PI-PLC-C1 PF16670.5 AJD67453.1 - 0.27 10.3 0.0 0.37 9.8 0.0 1.1 1 0 0 1 1 1 0 Phosphoinositide phospholipase C, Ca2+-dependent Metallophos PF00149.28 AJD67454.1 - 7.7e-13 49.4 0.0 1.5e-12 48.5 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AJD67454.1 - 3.5e-05 24.1 0.1 6.9e-05 23.1 0.0 1.5 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain DUF525 PF04379.14 AJD67455.1 - 1.4e-34 118.2 0.0 1.8e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 ApaG domain Chitin_bind_4 PF00379.23 AJD67455.1 - 0.65 10.6 3.2 1.1 9.8 1.6 2.3 2 1 0 2 2 2 0 Insect cuticle protein RrnaAD PF00398.20 AJD67456.1 - 4.3e-61 206.3 0.0 5.6e-61 205.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 AJD67456.1 - 0.15 12.8 0.0 0.28 11.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PdxA PF04166.12 AJD67457.1 - 5.1e-100 334.5 0.1 5.9e-100 334.3 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA SurA_N PF09312.11 AJD67458.1 - 1.7e-45 153.9 4.3 1.7e-45 153.9 4.3 2.1 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase PF00639.21 AJD67458.1 - 1.8e-43 147.4 0.0 9.5e-25 87.4 0.0 2.7 2 0 0 2 2 2 2 PPIC-type PPIASE domain Rotamase_3 PF13616.6 AJD67458.1 - 7.4e-39 132.9 0.0 1.3e-25 90.2 0.0 2.3 1 1 1 2 2 2 2 PPIC-type PPIASE domain SurA_N_3 PF13624.6 AJD67458.1 - 9e-16 58.1 1.8 9e-16 58.1 1.8 2.7 2 1 1 3 3 3 1 SurA N-terminal domain Rotamase_2 PF13145.6 AJD67458.1 - 2e-15 57.7 0.9 4.9e-07 30.6 0.1 3.5 2 2 0 2 2 2 2 PPIC-type PPIASE domain SurA_N_2 PF13623.6 AJD67458.1 - 3.5e-07 30.2 0.6 3.5e-07 30.2 0.6 2.9 2 1 1 3 3 3 1 SurA N-terminal domain Trigger_C PF05698.14 AJD67458.1 - 0.0097 15.9 2.7 0.024 14.6 0.1 2.9 2 1 1 3 3 3 1 Bacterial trigger factor protein (TF) C-terminus LptD PF04453.14 AJD67459.1 - 7.1e-100 334.9 24.6 1.1e-99 334.4 24.6 1.3 1 0 0 1 1 1 1 LPS transport system D OstA PF03968.14 AJD67459.1 - 9.2e-08 32.3 0.6 2.2e-07 31.1 0.6 1.7 1 0 0 1 1 1 1 OstA-like protein Porin_7 PF16956.5 AJD67459.1 - 0.0011 18.6 1.4 0.0031 17.2 1.4 1.8 1 1 0 1 1 1 1 Putative general bacterial porin OMP_b-brl PF13505.6 AJD67459.1 - 0.0065 16.6 1.2 0.0065 16.6 1.2 3.3 3 1 0 3 3 3 1 Outer membrane protein beta-barrel domain Hist_deacetyl PF00850.19 AJD67460.1 - 3.5e-07 30.0 0.0 3.6e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF2859 PF11072.8 AJD67460.1 - 0.076 12.7 0.0 0.086 12.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2859) B_lectin PF01453.24 AJD67461.1 - 1.5e-06 28.6 0.0 0.043 14.4 0.0 3.9 3 1 1 4 4 4 3 D-mannose binding lectin CarboxypepD_reg PF13620.6 AJD67461.1 - 0.053 13.8 0.3 0.26 11.6 0.0 2.2 2 1 1 3 3 3 0 Carboxypeptidase regulatory-like domain BofC_C PF08955.10 AJD67461.1 - 0.2 11.7 0.0 11 6.2 0.0 3.3 5 0 0 5 5 5 0 BofC C-terminal domain Hist_deacetyl PF00850.19 AJD67462.1 - 3.2e-76 256.8 0.0 4.8e-76 256.2 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain SnoaL PF07366.12 AJD67462.1 - 0.075 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase Cob_adeno_trans PF01923.18 AJD67463.1 - 1.1e-56 191.5 0.0 1.2e-56 191.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase FAD_binding_3 PF01494.19 AJD67465.1 - 6.8e-32 111.1 0.4 8.2e-32 110.8 0.4 1.1 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 AJD67465.1 - 1e-05 24.8 6.3 0.00098 18.3 3.6 2.9 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 AJD67465.1 - 0.00026 21.5 0.1 0.00065 20.2 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 AJD67465.1 - 0.00028 20.2 0.0 0.00062 19.1 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD67465.1 - 0.00075 18.7 5.7 0.0077 15.3 1.4 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 AJD67465.1 - 0.0022 17.7 3.2 0.0022 17.7 3.2 2.6 1 1 0 3 3 3 1 FAD dependent oxidoreductase SE PF08491.10 AJD67465.1 - 0.0096 15.0 0.0 0.042 12.9 0.0 1.8 2 0 0 2 2 2 1 Squalene epoxidase FAD_oxidored PF12831.7 AJD67465.1 - 0.0097 15.3 2.6 0.033 13.5 1.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD67465.1 - 0.011 15.9 3.7 0.018 15.3 0.7 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 AJD67465.1 - 0.015 14.2 2.3 0.68 8.7 0.2 2.6 2 1 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 AJD67465.1 - 0.064 12.3 0.6 0.094 11.8 0.6 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 AJD67465.1 - 0.27 11.1 0.2 0.77 9.6 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 AJD67466.1 - 4.3e-29 101.9 2.3 5.4e-29 101.5 2.3 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 AJD67466.1 - 1.6e-09 37.4 0.2 0.0008 18.7 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD67466.1 - 1.4e-07 31.4 10.2 2.3e-05 24.1 2.2 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 AJD67466.1 - 8.9e-06 26.2 0.3 0.0014 19.1 0.1 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 AJD67466.1 - 1.3e-05 24.4 0.0 2.5e-05 23.5 0.0 1.4 2 0 0 2 2 2 1 Squalene epoxidase FAD_binding_2 PF00890.24 AJD67466.1 - 0.00013 21.2 1.5 0.00013 21.2 1.5 2.5 2 1 1 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 AJD67466.1 - 0.00029 20.0 8.2 0.77 8.7 0.6 3.1 3 0 0 3 3 3 3 Lycopene cyclase protein Pyr_redox_3 PF13738.6 AJD67466.1 - 0.00046 19.5 0.2 0.064 12.5 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD67466.1 - 0.00066 18.5 2.6 0.28 9.8 1.2 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 AJD67466.1 - 0.0014 18.8 2.2 0.0045 17.2 1.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 AJD67466.1 - 0.012 14.5 7.3 0.14 11.0 0.8 2.5 2 1 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 AJD67466.1 - 0.022 14.7 6.3 0.041 13.9 1.5 3.2 3 1 0 3 3 3 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 AJD67466.1 - 0.049 12.9 1.9 0.89 8.8 0.1 2.4 2 1 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 AJD67466.1 - 0.064 12.6 6.6 0.18 11.1 4.2 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 AJD67466.1 - 0.072 12.2 2.2 0.092 11.8 2.2 1.4 1 1 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 AJD67466.1 - 0.089 13.2 0.1 0.21 12.0 0.1 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding Abhydrolase_1 PF00561.20 AJD67467.1 - 9.9e-11 41.8 0.0 0.00032 20.4 0.0 2.3 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD67467.1 - 2.4e-10 41.4 14.9 3e-10 41.1 14.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD67467.1 - 4.5e-09 35.9 0.9 6.1e-09 35.5 0.9 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 AJD67467.1 - 0.00031 20.9 0.4 0.00035 20.8 0.4 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.10 AJD67467.1 - 0.0023 18.0 0.0 0.0036 17.4 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein LIDHydrolase PF10230.9 AJD67467.1 - 0.0065 16.1 0.0 0.074 12.6 0.0 2.0 1 1 0 1 1 1 1 Lipid-droplet associated hydrolase FSH1 PF03959.13 AJD67467.1 - 0.017 14.8 0.0 0.16 11.6 0.0 2.2 2 1 1 3 3 3 0 Serine hydrolase (FSH1) Esterase PF00756.20 AJD67467.1 - 0.017 14.8 0.1 0.031 13.9 0.1 1.5 1 1 0 1 1 1 0 Putative esterase SnoaL_4 PF13577.6 AJD67468.1 - 7.1e-16 58.5 0.0 8.6e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 AJD67468.1 - 5.1e-06 27.1 0.5 8.5e-06 26.4 0.5 1.4 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 AJD67468.1 - 2.8e-05 24.4 0.1 3.7e-05 24.1 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) NTF2 PF02136.20 AJD67468.1 - 5e-05 23.9 0.0 5.9e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.6 AJD67468.1 - 0.067 13.5 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 SnoaL-like domain Phenol_MetA_deg PF13557.6 AJD67469.1 - 3.4e-44 151.6 6.6 4e-44 151.4 6.6 1.1 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation FCD PF07729.12 AJD67470.1 - 4.6e-18 65.8 4.5 1.2e-17 64.5 4.5 1.7 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AJD67470.1 - 4.3e-14 51.9 0.2 8.5e-14 51.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AJD67470.1 - 0.0012 18.4 0.1 0.0023 17.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 AJD67470.1 - 0.0013 18.6 0.1 0.0029 17.5 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.6 AJD67470.1 - 0.0026 18.2 0.0 0.0078 16.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF4423 PF14394.6 AJD67470.1 - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.20 AJD67470.1 - 0.071 13.5 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator LigB PF02900.18 AJD67471.1 - 2.1e-80 269.7 0.0 2.5e-80 269.4 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LigA PF07746.11 AJD67472.1 - 1.9e-32 111.2 0.9 2.5e-32 110.9 0.9 1.1 1 0 0 1 1 1 1 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LysR_substrate PF03466.20 AJD67473.1 - 1.1e-30 106.6 7.9 1.6e-30 106.1 7.9 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD67473.1 - 5.5e-16 58.3 3.0 6.5e-16 58.0 0.3 2.5 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family Methyltransf_24 PF13578.6 AJD67473.1 - 0.005 17.8 0.1 3.5 8.7 0.0 2.7 2 2 0 2 2 2 2 Methyltransferase domain HTH_28 PF13518.6 AJD67473.1 - 0.015 15.4 0.5 3.7 7.8 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 AJD67473.1 - 0.09 12.6 0.5 0.21 11.4 0.5 1.6 1 0 0 1 1 1 0 Homeodomain-like domain AMP-binding PF00501.28 AJD67474.1 - 1.1e-84 284.5 0.0 1.6e-84 284.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AJD67474.1 - 2.6e-19 69.9 0.0 5.6e-19 68.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Aldedh PF00171.22 AJD67475.1 - 5.9e-149 496.5 0.0 6.7e-149 496.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family ECH_1 PF00378.20 AJD67476.1 - 4.7e-49 167.0 0.0 5.6e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD67476.1 - 1.3e-28 100.5 0.0 1.5e-26 93.7 0.0 1.8 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase MarR_2 PF12802.7 AJD67477.1 - 4e-09 36.2 0.9 4e-09 36.2 0.9 2.0 3 0 0 3 3 3 1 MarR family MarR PF01047.22 AJD67477.1 - 3e-08 33.5 0.0 6e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 AJD67477.1 - 0.00032 21.1 0.1 0.00056 20.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain EF-hand_5 PF13202.6 AJD67478.1 - 3.6e-08 32.6 0.1 4.5e-06 25.9 0.2 2.3 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.6 AJD67478.1 - 1.1e-07 31.3 0.0 0.013 15.3 0.0 2.3 2 0 0 2 2 2 2 EF-hand domain EF-hand_7 PF13499.6 AJD67478.1 - 1.1e-07 32.2 0.0 0.01 16.2 0.0 2.3 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_1 PF00036.32 AJD67478.1 - 4.7e-07 28.9 0.0 0.0043 16.5 0.0 2.3 2 0 0 2 2 2 2 EF hand EF-hand_8 PF13833.6 AJD67478.1 - 0.00015 21.6 0.1 0.11 12.4 0.2 2.3 2 0 0 2 2 2 2 EF-hand domain pair HTH_37 PF13744.6 AJD67479.1 - 0.092 12.7 0.1 1.2 9.1 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain SGL PF08450.12 AJD67480.1 - 4e-45 154.3 0.1 5.2e-45 153.9 0.1 1.2 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Arylesterase PF01731.20 AJD67480.1 - 2e-05 24.7 0.0 0.0017 18.5 0.0 2.5 2 0 0 2 2 2 1 Arylesterase Lactonase PF10282.9 AJD67480.1 - 2.6e-05 23.7 0.0 0.00082 18.7 0.0 2.9 2 2 0 2 2 2 1 Lactonase, 7-bladed beta-propeller NHL PF01436.21 AJD67480.1 - 0.00034 20.5 0.3 8 6.7 0.0 4.6 5 0 0 5 5 5 1 NHL repeat Str_synth PF03088.16 AJD67480.1 - 0.0083 16.2 0.0 0.29 11.3 0.0 2.4 1 1 1 2 2 2 1 Strictosidine synthase OLF PF02191.16 AJD67480.1 - 0.026 14.1 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Olfactomedin-like domain NusG_II PF07009.11 AJD67480.1 - 0.21 11.8 0.0 1.2 9.4 0.0 1.9 2 0 0 2 2 2 0 NusG domain II GFO_IDH_MocA PF01408.22 AJD67481.1 - 1.6e-24 87.1 0.0 2.6e-24 86.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 AJD67481.1 - 0.0032 17.5 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DUF3903 PF13043.6 AJD67481.1 - 0.22 11.3 1.0 1 9.1 0.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3903) RlmM_FDX PF18125.1 AJD67482.1 - 3.8e-25 88.2 0.1 6.1e-25 87.5 0.1 1.3 1 0 0 1 1 1 1 RlmM ferredoxin-like domain FtsJ PF01728.19 AJD67482.1 - 1.2e-07 32.0 0.0 2.3e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase dCMP_cyt_deam_1 PF00383.23 AJD67483.1 - 2.9e-12 46.3 0.0 3.9e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 AJD67483.1 - 1.4e-09 37.8 0.0 1.9e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase LUD_dom PF02589.15 AJD67483.1 - 0.043 13.5 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 LUD domain DUF1180 PF06679.12 AJD67484.1 - 0.32 11.4 1.5 0.27 11.6 0.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) EamA PF00892.20 AJD67485.1 - 1e-11 45.2 38.0 1e-05 25.8 15.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family tRNA-synt_1c PF00749.21 AJD67486.1 - 4.5e-94 314.9 0.0 4.2e-92 308.4 0.0 2.6 2 1 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 AJD67486.1 - 2.8e-55 186.9 0.0 4.2e-55 186.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain GST_N_2 PF13409.6 AJD67487.1 - 1.5e-10 41.2 0.2 2.5e-10 40.5 0.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AJD67487.1 - 2e-09 37.7 0.0 3.7e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AJD67487.1 - 1.1e-08 35.3 0.0 2.1e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_4 PF14834.6 AJD67487.1 - 0.011 16.1 0.4 0.018 15.4 0.4 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD67487.1 - 0.027 14.5 6.4 0.067 13.2 6.4 1.8 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Glutaredoxin PF00462.24 AJD67487.1 - 0.16 12.2 0.0 0.41 10.9 0.0 1.7 2 0 0 2 2 2 0 Glutaredoxin DUF2007 PF09413.10 AJD67488.1 - 1.3e-12 47.6 0.0 1.5e-12 47.5 0.0 1.0 1 0 0 1 1 1 1 Putative prokaryotic signal transducing protein Response_reg PF00072.24 AJD67489.1 - 4.9e-27 94.3 0.0 6.1e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 AJD67490.1 - 2.3e-25 89.3 0.0 3.9e-25 88.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE3 PF05227.13 AJD67490.1 - 8.4e-22 77.6 6.9 8.4e-22 77.6 6.9 3.0 3 0 0 3 3 3 1 CHASE3 domain Response_reg PF00072.24 AJD67490.1 - 8.1e-18 64.6 0.0 1.5e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AJD67490.1 - 4.1e-14 52.3 0.7 4.1e-14 52.3 0.7 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AJD67490.1 - 2.4e-05 24.3 0.7 8.1e-05 22.6 0.0 2.2 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 AJD67490.1 - 0.0016 18.3 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AJD67490.1 - 0.013 15.9 2.8 0.013 15.9 0.4 2.4 2 0 0 2 2 2 0 HAMP domain Ost5 PF05251.12 AJD67490.1 - 0.048 13.9 0.5 1.2 9.5 0.1 2.3 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit 5 HPTransfase PF10090.9 AJD67490.1 - 0.27 11.1 3.0 0.18 11.6 0.2 2.3 2 1 0 2 2 2 0 Histidine phosphotransferase C-terminal domain GerE PF00196.19 AJD67491.1 - 2e-19 68.9 0.0 2.8e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD67491.1 - 1.2e-06 28.0 0.0 2.5e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD67491.1 - 7.5e-06 25.4 0.1 1.8e-05 24.2 0.1 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 AJD67491.1 - 0.00014 21.4 0.0 0.00024 20.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AJD67491.1 - 0.00067 19.4 0.5 0.048 13.5 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_10 PF04967.12 AJD67491.1 - 0.00068 19.4 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.7 AJD67491.1 - 0.052 13.6 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 AJD67491.1 - 0.071 13.1 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 AJD67491.1 - 0.17 11.7 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CaMKII_AD PF08332.10 AJD67492.1 - 8e-48 161.8 0.0 9.6e-48 161.6 0.0 1.1 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain DUF4440 PF14534.6 AJD67492.1 - 4.8e-17 62.3 0.0 6.3e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 AJD67492.1 - 4.2e-15 56.1 0.0 5.3e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 AJD67492.1 - 9e-12 45.5 0.1 1.5e-11 44.8 0.1 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 AJD67492.1 - 2.5e-08 34.1 0.1 3.8e-08 33.5 0.1 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 AJD67492.1 - 0.0022 17.8 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase Big_3_2 PF12245.8 AJD67492.1 - 0.046 14.0 0.1 0.098 12.9 0.1 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain DUF3225 PF11533.8 AJD67492.1 - 0.096 12.4 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3225) NTF2 PF02136.20 AJD67492.1 - 0.099 13.2 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain uDENN PF03456.18 AJD67492.1 - 0.15 12.9 0.0 1.8 9.4 0.0 2.4 1 1 0 1 1 1 0 uDENN domain PMSR PF01625.21 AJD67493.1 - 7.3e-62 208.1 3.6 8.5e-62 207.9 3.6 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Actin PF00022.19 AJD67493.1 - 0.055 12.1 0.0 0.074 11.6 0.0 1.1 1 0 0 1 1 1 0 Actin Ses_B PF17046.5 AJD67493.1 - 0.34 10.9 1.3 0.68 10.0 1.3 1.5 1 0 0 1 1 1 0 SesB domain on fungal death-pathway protein DJ-1_PfpI PF01965.24 AJD67494.1 - 8e-19 68.0 0.0 9.3e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family TAL_FSA PF00923.19 AJD67495.1 - 1.1e-90 303.9 0.0 1.2e-90 303.7 0.0 1.0 1 0 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase GreA_GreB PF01272.19 AJD67496.1 - 9.4e-22 76.7 0.0 1.2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term Rnk_N PF14760.6 AJD67496.1 - 2.1e-12 47.3 0.3 3.5e-12 46.6 0.3 1.4 1 0 0 1 1 1 1 Rnk N-terminus LysR_substrate PF03466.20 AJD67497.1 - 2.7e-50 170.6 9.3 4e-50 170.1 9.3 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD67497.1 - 4.3e-21 74.6 2.1 4.3e-21 74.6 0.0 2.1 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD67497.1 - 0.012 15.4 0.0 0.043 13.6 0.0 1.9 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.20 AJD67497.1 - 0.056 13.3 0.1 2.5 8.0 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family CoA_binding_3 PF13727.6 AJD67497.1 - 0.18 11.8 0.2 0.43 10.6 0.0 1.7 2 0 0 2 2 2 0 CoA-binding domain Pyr_redox_2 PF07992.14 AJD67498.1 - 6.1e-44 150.4 4.7 9.7e-44 149.8 4.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD67498.1 - 6.5e-20 71.6 0.5 1.4e-16 60.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD67498.1 - 1.2e-15 57.8 8.1 1.4e-14 54.4 0.9 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AJD67498.1 - 4.1e-11 42.6 6.9 0.00017 20.8 2.4 3.5 2 1 1 3 3 3 2 Glucose inhibited division protein A Thioredoxin_3 PF13192.6 AJD67498.1 - 4.1e-09 36.4 0.0 1.7e-08 34.4 0.0 2.2 2 0 0 2 2 1 1 Thioredoxin domain FAD_binding_2 PF00890.24 AJD67498.1 - 1.3e-07 31.1 21.5 0.017 14.2 4.5 5.1 2 2 3 5 5 5 3 FAD binding domain FAD_oxidored PF12831.7 AJD67498.1 - 2.2e-07 30.6 10.6 2.4e-06 27.2 0.4 3.1 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 AJD67498.1 - 1.3e-05 24.1 7.6 0.17 10.6 0.3 3.6 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 AJD67498.1 - 0.00031 20.4 11.5 0.05 13.2 3.0 3.7 4 0 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 AJD67498.1 - 0.00066 19.0 6.0 0.01 15.1 1.1 2.3 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 AJD67498.1 - 0.0012 18.2 9.0 0.059 12.7 0.1 3.0 2 1 1 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 AJD67498.1 - 0.0026 18.2 0.9 0.29 11.6 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Glutaredoxin PF00462.24 AJD67498.1 - 0.0032 17.7 1.7 0.0095 16.1 0.0 2.6 3 0 0 3 3 2 1 Glutaredoxin Thioredoxin_4 PF13462.6 AJD67498.1 - 0.0083 16.3 0.1 0.083 13.0 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin FMO-like PF00743.19 AJD67498.1 - 0.01 14.3 0.0 0.017 13.5 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like K_oxygenase PF13434.6 AJD67498.1 - 0.034 13.3 2.2 0.085 12.0 0.1 2.4 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 AJD67498.1 - 0.046 13.0 5.3 0.069 12.4 0.2 2.5 2 1 0 2 2 2 0 Thi4 family NAD_binding_8 PF13450.6 AJD67498.1 - 0.052 13.8 1.0 0.052 13.8 1.0 3.4 3 1 1 4 4 3 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.21 AJD67498.1 - 0.089 12.1 0.6 12 5.1 0.1 2.3 2 0 0 2 2 2 0 ThiF family Spermine_synth PF01564.17 AJD67498.1 - 0.13 11.6 0.5 0.64 9.4 0.1 2.0 2 0 0 2 2 2 0 Spermine/spermidine synthase domain Ribosomal_S9 PF00380.19 AJD67498.1 - 0.14 12.7 0.9 10 6.7 0.1 2.5 2 0 0 2 2 2 0 Ribosomal protein S9/S16 Trp_halogenase PF04820.14 AJD67498.1 - 0.15 10.9 6.6 2.3 7.0 1.4 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 AJD67498.1 - 0.8 8.7 4.0 5.9 5.8 1.1 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 AJD67498.1 - 1.9 8.4 6.1 2.3 8.0 0.3 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 AJD67498.1 - 7.1 6.6 7.7 25 4.8 0.0 3.7 4 0 0 4 4 4 0 FAD-NAD(P)-binding AhpC-TSA PF00578.21 AJD67499.1 - 1.7e-30 105.5 0.0 2.3e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AJD67499.1 - 4.8e-14 52.3 0.0 6e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 AJD67499.1 - 2.2e-05 24.2 0.2 4.1e-05 23.3 0.2 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 AJD67499.1 - 0.0038 17.1 0.0 0.0096 15.8 0.0 1.7 2 0 0 2 2 2 1 SCO1/SenC AhpC-TSA_2 PF13911.6 AJD67499.1 - 0.01 15.9 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme MTS PF05175.14 AJD67500.1 - 2e-17 63.3 0.0 9.3e-17 61.1 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase small domain PrmC_N PF17827.1 AJD67500.1 - 2.4e-16 60.0 0.2 2.4e-16 60.0 0.2 2.3 3 0 0 3 3 3 1 PrmC N-terminal domain Methyltransf_31 PF13847.6 AJD67500.1 - 2.1e-14 53.6 0.0 3.2e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67500.1 - 7.9e-09 36.1 0.0 1.9e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD67500.1 - 5.9e-07 30.1 0.0 1.7e-06 28.5 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.13 AJD67500.1 - 1.3e-06 28.1 0.0 1.9e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 AJD67500.1 - 8.4e-06 25.8 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67500.1 - 5.5e-05 23.8 0.0 0.00018 22.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 AJD67500.1 - 0.00019 21.0 0.0 0.00031 20.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_16 PF10294.9 AJD67500.1 - 0.00032 20.5 0.0 0.00047 19.9 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase UPF0020 PF01170.18 AJD67500.1 - 0.00056 19.6 0.0 0.00084 19.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 AJD67500.1 - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 AJD67500.1 - 0.0018 18.2 0.0 0.0056 16.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 AJD67500.1 - 0.0039 16.5 0.0 0.0057 16.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 AJD67500.1 - 0.0064 15.8 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 AJD67500.1 - 0.016 14.9 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 AJD67500.1 - 0.021 14.4 0.0 0.028 14.0 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 AJD67500.1 - 0.058 12.7 0.0 0.085 12.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.16 AJD67500.1 - 0.061 12.6 0.0 0.14 11.4 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase tRNA_U5-meth_tr PF05958.11 AJD67500.1 - 0.17 10.8 0.0 0.24 10.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase FliC_SP PF12613.8 AJD67500.1 - 1.7 9.2 5.8 4.1 8.0 5.8 1.6 1 0 0 1 1 1 0 Flagellin structural protein Abhydrolase_1 PF00561.20 AJD67501.1 - 7.7e-32 110.9 0.4 1.4e-31 110.1 0.4 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD67501.1 - 5.5e-13 48.7 0.1 8.2e-12 44.9 0.1 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 AJD67501.1 - 0.0024 18.0 0.0 0.005 16.9 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein FGase PF05013.12 AJD67502.1 - 2.7e-47 161.8 1.2 3.2e-47 161.5 1.2 1.1 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase NUDIX PF00293.28 AJD67503.1 - 1.2e-07 31.8 0.1 1.5e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain 5_3_exonuc_N PF02739.16 AJD67504.1 - 8.4e-39 133.0 0.0 1.3e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain 5_3_exonuc PF01367.20 AJD67504.1 - 1.8e-23 82.9 0.0 2.9e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 AJD67504.1 - 0.031 14.4 0.0 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Nitroreductase PF00881.24 AJD67505.1 - 8.1e-20 71.6 0.0 9.3e-20 71.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family DUF1631 PF07793.11 AJD67506.1 - 1.2e-157 526.6 33.2 1.3e-157 526.4 33.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1631) DUF1682 PF07946.14 AJD67506.1 - 0.082 12.1 0.4 0.19 10.9 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) Radial_spoke_3 PF06098.11 AJD67506.1 - 0.6 9.3 4.4 0.26 10.6 0.3 2.0 2 0 0 2 2 2 0 Radial spoke protein 3 TPR_20 PF14561.6 AJD67506.1 - 0.86 10.0 7.3 5 7.5 0.2 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Gluconate_2-dh3 PF13618.6 AJD67506.1 - 1.2 9.4 3.7 0.92 9.7 0.0 2.6 3 0 0 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 DUF1631 PF07793.11 AJD67507.1 - 7.4e-205 682.7 23.0 8.3e-205 682.5 23.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1631) CBP_BcsO PF17037.5 AJD67507.1 - 0.21 11.7 3.4 4.1 7.5 0.6 2.3 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsO Hydrolase_4 PF12146.8 AJD67508.1 - 3.3e-12 46.2 0.6 6.8e-12 45.2 0.6 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD67508.1 - 1e-07 31.9 0.2 0.00079 19.1 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD67508.1 - 8.7e-07 29.8 18.1 8.7e-07 29.8 18.1 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 AJD67508.1 - 0.0059 16.7 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein OAR PF03826.17 AJD67508.1 - 0.69 9.8 2.5 1.3 8.9 2.5 1.5 1 0 0 1 1 1 0 OAR domain TetR_C_33 PF13305.6 AJD67509.1 - 3.1e-14 53.6 3.8 3.1e-14 53.6 3.8 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 AJD67509.1 - 9.8e-07 28.5 0.0 2.5e-06 27.2 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family AlaDh_PNT_C PF01262.21 AJD67510.1 - 1.6e-49 168.1 2.2 2.7e-49 167.4 2.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 AJD67510.1 - 4.7e-36 124.1 0.2 7.3e-36 123.5 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 AJD67510.1 - 0.0005 19.5 0.0 0.012 15.0 0.1 2.3 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 AJD67510.1 - 0.0015 18.6 0.2 0.022 14.7 0.1 2.5 2 1 0 2 2 2 1 Zinc-binding dehydrogenase GIDA PF01134.22 AJD67510.1 - 0.0021 17.2 0.9 0.0021 17.2 0.9 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 AJD67510.1 - 0.0036 16.6 1.2 0.0036 16.6 1.2 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD67510.1 - 0.011 15.9 1.1 0.084 13.1 0.6 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 AJD67510.1 - 0.016 15.4 0.6 0.056 13.6 0.6 2.1 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 AJD67510.1 - 0.018 15.6 0.1 0.04 14.5 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD67510.1 - 0.02 13.6 0.1 0.032 12.9 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein AlaDh_PNT_C PF01262.21 AJD67511.1 - 6.6e-05 22.3 0.0 6.7e-05 22.3 0.0 1.0 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Cytochrom_D1 PF02239.16 AJD67511.1 - 0.065 11.8 0.0 0.067 11.7 0.0 1.0 1 0 0 1 1 1 0 Cytochrome D1 heme domain DUF3106 PF11304.8 AJD67512.1 - 1e-21 77.3 20.7 1.3e-21 77.0 20.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3106) RPAP1_N PF08621.10 AJD67512.1 - 0.042 13.6 5.6 6.6 6.6 0.3 3.8 2 1 2 4 4 4 0 RPAP1-like, N-terminal DUF1289 PF06945.13 AJD67512.1 - 0.043 13.6 14.5 3.7 7.4 0.4 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF1289) Arfaptin PF06456.13 AJD67512.1 - 0.099 12.2 0.7 0.15 11.6 0.7 1.2 1 0 0 1 1 1 0 Arfaptin-like domain Metal_resist PF13801.6 AJD67512.1 - 0.17 12.1 21.3 3.1 8.0 5.5 3.4 1 1 2 3 3 3 0 Heavy-metal resistance BESS PF02944.20 AJD67512.1 - 0.2 11.5 5.9 5.1 7.0 0.1 3.2 3 1 1 4 4 4 0 BESS motif TetR_C_24 PF17932.1 AJD67512.1 - 0.23 11.8 2.4 0.46 10.8 1.1 2.2 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HTH_38 PF13936.6 AJD67512.1 - 0.29 10.9 1.6 5.2 6.9 0.1 3.2 3 1 1 4 4 4 0 Helix-turn-helix domain DUF2924 PF11149.8 AJD67512.1 - 0.35 11.3 4.5 1.3 9.4 3.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2924) Enkurin PF13864.6 AJD67512.1 - 0.66 10.4 8.3 1.3 9.5 1.0 2.3 1 1 1 2 2 2 0 Calmodulin-binding LPD11 PF18824.1 AJD67512.1 - 0.96 9.6 4.2 1.6 8.9 0.3 2.3 2 1 0 2 2 2 0 Large polyvalent protein-associated domain 11 Catalase-rel PF06628.12 AJD67512.1 - 3.3 8.0 5.5 18 5.6 0.1 3.2 1 1 1 3 3 3 0 Catalase-related immune-responsive MlaC PF05494.12 AJD67512.1 - 3.5 7.3 7.3 16 5.2 0.1 3.5 2 1 2 4 4 4 0 MlaC protein DUF3040 PF11239.8 AJD67513.1 - 0.09 13.1 0.2 0.14 12.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Sigma70_r4_2 PF08281.12 AJD67514.1 - 1.3e-17 63.2 0.1 2e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD67514.1 - 4.7e-10 38.8 0.1 8.4e-10 38.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD67514.1 - 1.3e-05 24.8 0.5 3.1e-05 23.6 0.5 1.7 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 AJD67514.1 - 0.00016 21.7 0.4 0.00021 21.2 0.4 1.3 1 1 0 1 1 1 1 ECF sigma factor GerE PF00196.19 AJD67514.1 - 0.0086 15.6 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_30 PF13556.6 AJD67514.1 - 0.059 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain PNTB_4TM PF12769.7 AJD67515.1 - 8.8e-29 99.8 6.1 1e-28 99.6 6.1 1.0 1 0 0 1 1 1 1 4TM region of pyridine nucleotide transhydrogenase, mitoch PNTB PF02233.16 AJD67516.1 - 2.4e-165 551.0 23.8 2.7e-165 550.8 23.8 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.22 AJD67516.1 - 0.026 14.3 0.2 0.086 12.6 0.2 1.9 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Phage_holin_2_4 PF16082.5 AJD67516.1 - 0.32 10.8 4.9 0.24 11.2 0.9 2.9 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like FeS_assembly_P PF01883.19 AJD67518.1 - 1.2e-11 44.5 0.1 1.9e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Aminotran_4 PF01063.19 AJD67519.1 - 6.4e-35 121.0 0.0 7.8e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Peptidase_S8 PF00082.22 AJD67520.1 - 1.4e-52 178.8 24.8 2.5e-52 178.0 24.8 1.4 1 0 0 1 1 1 1 Subtilase family PPC PF04151.15 AJD67520.1 - 4.3e-12 47.0 0.6 4.3e-12 47.0 0.6 3.4 3 1 0 3 3 3 1 Bacterial pre-peptidase C-terminal domain Peptidase_S8 PF00082.22 AJD67521.1 - 4.1e-55 187.2 23.7 5.7e-55 186.7 23.7 1.1 1 0 0 1 1 1 1 Subtilase family Asparaginase_C PF17763.1 AJD67521.1 - 0.035 14.3 3.2 0.058 13.6 1.0 2.5 3 0 0 3 3 3 0 Glutaminase/Asparaginase C-terminal domain Peptidase_S8 PF00082.22 AJD67522.1 - 9.9e-52 176.0 18.0 1.5e-51 175.5 18.0 1.2 1 0 0 1 1 1 1 Subtilase family PPC PF04151.15 AJD67522.1 - 1.4e-13 51.8 1.2 4.1e-13 50.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain Asparaginase_C PF17763.1 AJD67522.1 - 0.084 13.1 9.1 1.3 9.3 0.6 3.1 3 0 0 3 3 3 0 Glutaminase/Asparaginase C-terminal domain tRNA_edit PF04073.15 AJD67523.1 - 3.8e-22 78.6 0.1 5e-22 78.3 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Asparaginase PF00710.20 AJD67524.1 - 1.1e-23 83.8 0.0 1.3e-23 83.5 0.0 1.0 1 0 0 1 1 1 1 Asparaginase, N-terminal DRTGG PF07085.12 AJD67524.1 - 0.038 13.8 0.3 0.094 12.5 0.3 1.7 1 1 0 1 1 1 0 DRTGG domain Beta_helix_2 PF18835.1 AJD67524.1 - 0.045 13.5 0.1 0.083 12.7 0.1 1.4 1 0 0 1 1 1 0 Beta helix repeat of Inulin fructotransferase KH_6 PF15985.5 AJD67524.1 - 0.14 12.5 0.6 0.59 10.5 0.2 2.1 2 0 0 2 2 2 0 KH domain Glyco_hydro_30 PF02055.16 AJD67525.1 - 2.1e-05 23.7 0.1 3e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 TIM-barrel domain Glyco_hydr_30_2 PF14587.6 AJD67525.1 - 0.0068 16.0 0.0 0.17 11.5 0.0 2.1 2 0 0 2 2 2 2 O-Glycosyl hydrolase family 30 Glyco_hydro_30C PF17189.4 AJD67526.1 - 2.2e-14 53.4 1.0 4.2e-14 52.5 1.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 30 beta sandwich domain DUF2069 PF09842.9 AJD67527.1 - 6.8e-08 32.6 9.1 9.1e-08 32.2 9.1 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2069) TMEM220 PF15071.6 AJD67527.1 - 0.066 14.0 2.2 0.11 13.3 2.2 1.5 1 1 0 1 1 1 0 Transmembrane family 220, helix Phage_holin_3_6 PF07332.11 AJD67527.1 - 0.07 13.2 14.6 0.21 11.7 4.8 2.1 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III FMN_red PF03358.15 AJD67528.1 - 2.2e-09 37.2 0.0 2.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 AJD67528.1 - 0.0043 16.8 0.0 0.0051 16.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 AJD67528.1 - 0.072 13.3 0.0 0.47 10.6 0.0 2.0 2 0 0 2 2 2 0 Flavodoxin Flavodoxin_5 PF12724.7 AJD67528.1 - 0.19 12.0 0.0 15 5.8 0.0 2.1 2 0 0 2 2 2 0 Flavodoxin domain Virul_fac_BrkB PF03631.15 AJD67529.1 - 8.3e-57 192.7 27.9 1e-56 192.4 27.9 1.1 1 0 0 1 1 1 1 Virulence factor BrkB AhpC-TSA PF00578.21 AJD67530.1 - 4.2e-17 62.2 0.0 1.1e-16 60.9 0.0 1.6 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AJD67530.1 - 3e-15 56.2 0.0 5.2e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 AJD67530.1 - 7.6e-09 35.8 0.0 1.4e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 AJD67530.1 - 2e-06 27.7 0.0 7.3e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_7 PF13899.6 AJD67530.1 - 0.002 18.3 0.2 0.0041 17.3 0.2 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 AJD67530.1 - 0.0043 17.5 0.0 0.0073 16.8 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain DEC-1_N PF04625.13 AJD67530.1 - 0.56 9.2 8.2 0.8 8.7 8.2 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Acylphosphatase PF00708.18 AJD67531.1 - 8.6e-17 61.3 0.0 9.5e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase ZF-HD_dimer PF04770.12 AJD67531.1 - 0.11 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 ZF-HD protein dimerisation region PPK2 PF03976.14 AJD67533.1 - 8.4e-94 313.3 0.1 1e-93 313.0 0.1 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Thymidylate_kin PF02223.17 AJD67533.1 - 0.033 13.9 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase MoCF_biosynth PF00994.24 AJD67534.1 - 8.2e-31 106.6 0.0 9.6e-31 106.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Glyco_transf_41 PF13844.6 AJD67535.1 - 4.5e-78 262.8 0.0 1.3e-45 155.7 0.0 2.1 1 1 1 2 2 2 2 Glycosyl transferase family 41 TPR_16 PF13432.6 AJD67535.1 - 6.4e-11 42.7 20.3 5.8e-07 30.0 4.2 4.6 5 1 2 7 7 6 3 Tetratricopeptide repeat TPR_2 PF07719.17 AJD67535.1 - 5.5e-09 35.5 1.6 0.0019 18.1 0.2 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 AJD67535.1 - 2.6e-08 34.2 13.4 4.4e-08 33.5 3.2 3.9 3 1 2 5 5 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD67535.1 - 5.5e-08 33.0 15.3 0.00087 19.9 0.8 6.7 4 3 3 7 7 6 4 Tetratricopeptide repeat TPR_11 PF13414.6 AJD67535.1 - 3e-05 23.6 1.0 0.0066 16.1 0.0 3.0 1 1 2 3 3 3 1 TPR repeat TPR_1 PF00515.28 AJD67535.1 - 5.2e-05 22.9 0.0 0.0037 17.0 0.1 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 AJD67535.1 - 0.00022 21.6 2.7 1.2 9.9 0.1 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 AJD67535.1 - 0.00033 20.9 11.7 0.00079 19.7 3.5 3.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 AJD67535.1 - 0.00051 19.9 1.3 0.66 10.1 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD67535.1 - 0.0028 17.8 0.0 2.1 8.8 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.9 AJD67535.1 - 0.0036 17.0 0.4 0.0091 15.7 0.4 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain ANAPC3 PF12895.7 AJD67535.1 - 0.0058 16.8 0.0 0.017 15.4 0.0 1.8 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 AJD67535.1 - 0.0063 16.8 0.0 33 5.2 0.0 4.1 3 1 1 4 4 3 0 Tetratricopeptide repeat TPR_20 PF14561.6 AJD67535.1 - 0.096 13.0 1.4 23 5.4 0.3 3.8 2 1 1 3 3 3 0 Tetratricopeptide repeat QRPTase_C PF01729.19 AJD67535.1 - 0.14 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain TPR_10 PF13374.6 AJD67535.1 - 6 6.9 7.4 4.5 7.3 0.7 3.2 3 0 0 3 3 2 0 Tetratricopeptide repeat PCRF PF03462.18 AJD67536.1 - 3.7e-70 235.7 0.9 7.9e-70 234.7 0.1 1.8 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 AJD67536.1 - 4.7e-42 142.6 1.4 1.2e-41 141.3 1.4 1.7 1 0 0 1 1 1 1 RF-1 domain ABC_tran_CTD PF16326.5 AJD67536.1 - 0.0014 18.9 16.7 0.0017 18.6 0.1 3.1 2 1 1 3 3 3 2 ABC transporter C-terminal domain DUF4407 PF14362.6 AJD67536.1 - 0.016 14.6 6.4 0.19 11.0 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) DUF2730 PF10805.8 AJD67536.1 - 0.11 12.5 0.2 6.7 6.9 0.0 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) GlutR_N PF05201.15 AJD67537.1 - 7.2e-49 165.3 0.0 1.4e-48 164.3 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 AJD67537.1 - 1e-46 158.4 0.1 2.4e-46 157.2 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 AJD67537.1 - 8.6e-19 67.8 0.5 2.9e-18 66.1 0.5 2.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain EntA_Immun PF08951.10 AJD67537.1 - 0.065 13.6 0.1 0.29 11.5 0.1 2.1 1 1 0 1 1 1 0 Enterocin A Immunity Ish1 PF10281.9 AJD67537.1 - 0.18 12.1 0.2 1.3 9.3 0.1 2.5 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein TPR_19 PF14559.6 AJD67538.1 - 6.2e-20 71.5 50.2 1.2e-06 28.9 2.7 8.0 5 2 4 9 9 9 7 Tetratricopeptide repeat TPR_2 PF07719.17 AJD67538.1 - 2.8e-15 55.1 31.2 0.00089 19.2 0.0 11.3 11 0 0 11 11 11 5 Tetratricopeptide repeat TPR_16 PF13432.6 AJD67538.1 - 1.3e-14 54.5 78.7 5.9e-05 23.6 4.1 9.8 5 3 6 11 11 11 8 Tetratricopeptide repeat TPR_14 PF13428.6 AJD67538.1 - 1.1e-13 50.8 79.1 0.0035 18.1 0.4 13.3 4 3 10 14 14 14 7 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD67538.1 - 1.2e-13 51.1 0.1 7.1e-05 22.9 0.0 4.3 4 0 0 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 AJD67538.1 - 1e-12 47.9 35.9 2.8e-07 30.0 14.7 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 AJD67538.1 - 1.1e-11 44.8 26.8 0.0028 17.9 0.4 8.3 6 3 1 7 7 7 3 Tetratricopeptide repeat TPR_1 PF00515.28 AJD67538.1 - 9.1e-09 34.8 14.6 0.25 11.2 0.0 9.2 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD67538.1 - 1.4e-08 34.3 7.5 0.13 12.6 0.0 8.1 9 0 0 9 9 8 1 Tetratricopeptide repeat TPR_17 PF13431.6 AJD67538.1 - 1.4e-05 25.1 16.8 0.48 10.9 0.0 8.1 10 0 0 10 10 8 2 Tetratricopeptide repeat NARP1 PF12569.8 AJD67538.1 - 7.8e-05 21.8 0.7 0.0013 17.8 0.1 2.8 2 1 1 3 3 3 1 NMDA receptor-regulated protein 1 TPR_9 PF13371.6 AJD67538.1 - 0.00033 20.7 11.6 0.00097 19.2 4.3 7.5 4 4 4 8 8 8 2 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 AJD67538.1 - 0.00057 19.5 12.1 0.2 11.3 0.5 4.5 3 2 1 4 4 4 2 Bacterial type III secretion protein (HrpB1_HrpK) TPR_11 PF13414.6 AJD67538.1 - 0.017 14.8 21.0 12 5.7 0.0 8.7 9 0 0 9 9 9 0 TPR repeat Sec16_C PF12931.7 AJD67538.1 - 0.12 12.0 0.0 3.4 7.3 0.0 3.1 3 1 0 4 4 4 0 Sec23-binding domain of Sec16 DUF4810 PF16068.5 AJD67538.1 - 0.16 12.5 0.0 5.1 7.7 0.0 3.3 3 1 1 4 4 3 0 Domain of unknown function (DUF4810) Fis1_TPR_C PF14853.6 AJD67538.1 - 0.3 11.2 5.0 44 4.3 0.1 4.5 4 1 1 5 5 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 AJD67538.1 - 0.47 10.8 28.8 3.2 8.1 1.4 6.9 3 3 2 6 6 6 0 Tetratricopeptide repeat TPR_21 PF09976.9 AJD67538.1 - 0.95 9.1 20.7 1.1 8.9 0.0 4.8 3 2 1 4 4 4 0 Tetratricopeptide repeat-like domain TPR_7 PF13176.6 AJD67538.1 - 1.2 9.4 17.2 23 5.3 0.1 7.5 7 2 1 8 8 8 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD67538.1 - 5.9 7.8 0.0 4 8.4 1.0 12.8 13 1 1 14 14 12 0 Tetratricopeptide repeat LolB PF03550.14 AJD67539.1 - 1.8e-38 132.0 0.6 2.3e-38 131.6 0.6 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein LolB GHMP_kinases_N PF00288.26 AJD67540.1 - 1.4e-10 41.3 0.8 3.4e-10 40.0 0.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 AJD67540.1 - 1.7e-05 25.1 0.1 3.9e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal RRM_1 PF00076.22 AJD67540.1 - 0.038 13.8 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SPOR PF05036.13 AJD67540.1 - 0.069 13.5 0.1 0.18 12.2 0.1 1.7 1 0 0 1 1 1 0 Sporulation related domain Pribosyltran_N PF13793.6 AJD67541.1 - 7.6e-47 158.0 1.5 3.9e-46 155.7 0.2 2.3 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 AJD67541.1 - 4.6e-31 108.3 1.0 9.8e-31 107.2 0.3 1.8 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 AJD67541.1 - 9.2e-19 67.5 2.2 8.8e-18 64.3 1.2 2.6 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AJD67541.1 - 0.082 12.3 0.2 0.48 9.8 0.1 2.0 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase Ribosomal_L25p PF01386.19 AJD67542.1 - 2.4e-26 92.0 0.0 4.6e-26 91.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal L25p family Ribosomal_TL5_C PF14693.6 AJD67542.1 - 3.7e-24 84.9 2.5 6.3e-24 84.2 2.5 1.4 1 0 0 1 1 1 1 Ribosomal protein TL5, C-terminal domain Pept_tRNA_hydro PF01195.19 AJD67543.1 - 2e-53 180.9 0.0 2.2e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase YchF-GTPase_C PF06071.13 AJD67544.1 - 1.8e-37 127.4 0.1 3.6e-37 126.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 AJD67544.1 - 3e-22 78.8 0.0 5.6e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AJD67544.1 - 1.7e-08 34.2 0.0 7.3e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.21 AJD67544.1 - 0.021 14.8 0.2 0.078 13.0 0.2 1.9 1 1 0 1 1 1 0 TGS domain GTP_EFTU PF00009.27 AJD67545.1 - 2.9e-56 190.1 0.0 4.2e-56 189.6 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 AJD67545.1 - 1.1e-33 115.9 0.0 2.2e-33 114.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 AJD67545.1 - 1.6e-20 73.2 4.8 4e-20 72.0 4.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AJD67545.1 - 0.00014 21.9 0.0 0.00026 21.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AJD67545.1 - 0.026 14.4 0.0 0.071 13.0 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 AJD67545.1 - 0.13 11.8 0.3 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SecE PF00584.20 AJD67546.1 - 9.6e-20 70.3 3.8 9.6e-20 70.3 3.8 2.9 3 0 0 3 3 3 1 SecE/Sec61-gamma subunits of protein translocation complex Abhydrolase_9_N PF15420.6 AJD67546.1 - 0.017 15.1 4.9 0.021 14.8 4.9 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Bac_export_2 PF01312.19 AJD67546.1 - 0.11 11.6 1.3 0.22 10.7 1.3 1.4 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family NnrU PF07298.11 AJD67546.1 - 0.14 11.7 6.0 0.03 13.8 1.2 1.9 1 1 1 2 2 2 0 NnrU protein DUF5056 PF16479.5 AJD67546.1 - 0.18 12.0 0.2 0.18 12.0 0.2 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5056) DUF4407 PF14362.6 AJD67546.1 - 0.56 9.5 5.8 0.96 8.7 5.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) NusG PF02357.19 AJD67547.1 - 9.2e-23 80.6 0.0 1.5e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 AJD67547.1 - 1.7e-07 31.0 0.0 3.3e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L11_N PF03946.14 AJD67548.1 - 4.4e-31 106.5 0.3 7.3e-31 105.8 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 AJD67548.1 - 2.2e-25 88.9 1.8 3.4e-25 88.3 1.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 AJD67549.1 - 3.3e-46 157.6 0.0 3.9e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 AJD67550.1 - 5e-23 81.1 0.3 7.3e-23 80.6 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L12 PF00542.19 AJD67551.1 - 1.8e-26 92.3 5.3 1.8e-26 92.3 5.3 2.0 2 0 0 2 2 2 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 AJD67551.1 - 5.4e-19 67.6 11.4 1.6e-18 66.1 9.6 2.3 2 0 0 2 2 2 1 Ribosomal protein L7/L12 dimerisation domain DUF2482 PF10655.9 AJD67551.1 - 0.014 15.9 1.0 2 8.9 0.0 2.4 2 1 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) MCR_alpha PF02249.17 AJD67551.1 - 0.084 13.3 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Fer2_BFD PF04324.15 AJD67551.1 - 0.49 10.8 3.6 0.6 10.5 0.1 2.6 3 1 1 4 4 4 0 BFD-like [2Fe-2S] binding domain Ribosomal_60s PF00428.19 AJD67551.1 - 5.9 7.5 14.4 0.13 12.9 3.8 2.3 2 1 0 2 2 2 0 60s Acidic ribosomal protein RNA_pol_Rpb2_6 PF00562.28 AJD67553.1 - 3.5e-158 526.7 3.4 5.2e-158 526.2 0.4 2.3 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 AJD67553.1 - 8.6e-41 139.7 0.0 2.4e-40 138.2 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 AJD67553.1 - 7.7e-29 99.7 0.0 1.7e-28 98.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.20 AJD67553.1 - 4.7e-27 94.2 0.3 1e-26 93.1 0.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 AJD67553.1 - 5e-24 85.0 0.0 9e-08 32.0 0.0 3.4 3 0 0 3 3 3 3 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_45 PF10385.9 AJD67553.1 - 9.5e-23 80.2 0.3 6.8e-22 77.5 0.0 2.8 3 0 0 3 3 3 1 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 AJD67554.1 - 1.1e-86 291.0 0.0 1.8e-86 290.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 AJD67554.1 - 3.7e-78 262.7 0.0 7.6e-78 261.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 AJD67554.1 - 2.7e-38 131.8 0.0 1.7e-27 96.7 0.0 2.8 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 AJD67554.1 - 6e-28 97.8 0.0 1.2e-27 96.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 AJD67554.1 - 2.7e-19 69.1 0.3 5.7e-19 68.1 0.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Apocytochr_F_C PF01333.19 AJD67554.1 - 0.00031 20.7 0.1 0.065 13.3 0.1 2.6 2 0 0 2 2 2 1 Apocytochrome F, C-terminal Biotin_lipoyl PF00364.22 AJD67554.1 - 1.2 9.0 0.0 1.2 9.0 0.0 3.8 5 0 0 5 5 5 0 Biotin-requiring enzyme Ribosom_S12_S23 PF00164.25 AJD67555.1 - 1.1e-40 137.8 0.7 1.2e-40 137.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S12 PF17487.2 AJD67555.1 - 0.17 12.6 0.0 0.3 11.9 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein S12 Ribosomal_S7 PF00177.21 AJD67556.1 - 2.7e-64 215.3 3.5 3e-64 215.2 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e B12-binding_2 PF02607.17 AJD67556.1 - 0.1 13.0 0.4 0.48 10.9 0.4 2.2 1 1 0 1 1 1 0 B12 binding domain GTP_EFTU PF00009.27 AJD67557.1 - 1.7e-65 220.2 0.0 2.7e-65 219.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AJD67557.1 - 7e-43 145.3 0.1 1.5e-42 144.2 0.1 1.6 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 AJD67557.1 - 9.4e-36 121.8 0.3 2.8e-35 120.2 0.1 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 AJD67557.1 - 2.6e-29 101.1 0.1 9e-29 99.4 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AJD67557.1 - 8.5e-19 67.7 0.1 2e-18 66.5 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AJD67557.1 - 2.6e-07 30.5 0.0 6.3e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU PF00009.27 AJD67558.1 - 2.9e-56 190.1 0.0 4.2e-56 189.6 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 AJD67558.1 - 1.1e-33 115.9 0.0 2.2e-33 114.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 AJD67558.1 - 1.6e-20 73.2 4.8 4e-20 72.0 4.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AJD67558.1 - 0.00014 21.9 0.0 0.00026 21.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AJD67558.1 - 0.026 14.4 0.0 0.071 13.0 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 AJD67558.1 - 0.13 11.8 0.3 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S10 PF00338.22 AJD67559.1 - 2e-34 117.7 0.1 2.3e-34 117.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L3 PF00297.22 AJD67560.1 - 2.9e-15 56.1 5.5 4e-15 55.7 2.0 2.2 1 1 1 2 2 2 2 Ribosomal protein L3 Ribosomal_L4 PF00573.22 AJD67561.1 - 7e-55 185.7 0.5 7.9e-55 185.5 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 AJD67562.1 - 1.5e-28 99.0 1.6 1.7e-28 98.8 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.18 AJD67563.1 - 1.5e-53 180.3 3.3 2.5e-53 179.6 3.3 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 AJD67563.1 - 3.3e-35 119.9 4.0 2.6e-34 117.0 2.2 2.3 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 AJD67564.1 - 5.7e-36 122.3 0.4 6.4e-36 122.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 AJD67565.1 - 2.4e-32 111.3 0.8 2.6e-32 111.1 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 AJD67566.1 - 2.9e-40 136.7 0.7 5.4e-40 135.8 0.7 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 AJD67566.1 - 7.6e-20 70.5 2.2 1.4e-19 69.7 2.2 1.4 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 AJD67566.1 - 0.0085 15.9 0.2 0.027 14.4 0.1 1.8 1 1 1 2 2 2 1 KH domain Ribosomal_L16 PF00252.18 AJD67567.1 - 5.5e-49 165.5 0.7 6.2e-49 165.4 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_L29 PF00831.23 AJD67568.1 - 9.1e-21 73.6 2.9 1e-20 73.5 2.9 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MukF_C PF17193.4 AJD67568.1 - 0.0068 16.6 0.1 0.0068 16.6 0.1 1.1 1 0 0 1 1 1 1 MukF C-terminal domain Shugoshin_N PF07558.11 AJD67568.1 - 0.095 12.6 0.2 0.35 10.8 0.0 2.0 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region Ribosomal_S17 PF00366.20 AJD67569.1 - 5.3e-32 109.7 3.2 6.4e-32 109.5 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 mTERF PF02536.14 AJD67569.1 - 0.1 11.5 0.1 0.11 11.4 0.1 1.0 1 0 0 1 1 1 0 mTERF Ribosomal_L14 PF00238.19 AJD67570.1 - 1.1e-56 190.2 0.3 1.2e-56 190.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e ribosomal_L24 PF17136.4 AJD67571.1 - 2.9e-23 82.0 0.2 2.9e-23 82.0 0.2 1.7 2 0 0 2 2 2 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 KOW PF00467.29 AJD67571.1 - 2.1e-06 27.5 7.4 4.8e-06 26.3 7.4 1.6 1 0 0 1 1 1 1 KOW motif Methyltrans_RNA PF04452.14 AJD67571.1 - 0.042 13.2 0.2 0.057 12.7 0.2 1.2 1 0 0 1 1 1 0 RNA methyltransferase YajC PF02699.15 AJD67571.1 - 0.44 10.5 3.7 0.21 11.5 1.1 1.8 2 0 0 2 2 2 0 Preprotein translocase subunit Ribosomal_L5_C PF00673.21 AJD67572.1 - 6.6e-40 135.2 0.0 1.1e-39 134.5 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 AJD67572.1 - 4.9e-28 97.2 1.8 1.3e-27 95.8 1.4 1.9 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 AJD67573.1 - 1.3e-23 82.5 1.5 1.8e-23 82.1 1.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF3786 PF12654.7 AJD67573.1 - 0.076 12.6 0.1 0.1 12.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3786) Ribosomal_S8 PF00410.19 AJD67574.1 - 1.5e-46 157.5 0.1 1.6e-46 157.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 AJD67575.1 - 7.9e-37 125.8 0.4 1.4e-19 70.5 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF111 PF01969.17 AJD67575.1 - 0.007 15.5 0.2 0.0097 15.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 Lyase_8_C PF02884.17 AJD67575.1 - 0.21 12.1 0.3 0.78 10.3 0.0 1.9 2 0 0 2 2 2 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Ribosomal_L18p PF00861.22 AJD67576.1 - 1.6e-37 128.4 5.1 1.8e-37 128.2 5.1 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ist1 PF03398.14 AJD67576.1 - 0.053 13.4 0.3 0.093 12.6 0.1 1.5 1 1 0 1 1 1 0 Regulator of Vps4 activity in the MVB pathway DUF3502 PF12010.8 AJD67576.1 - 0.15 12.7 0.2 0.19 12.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3502) DUF3263 PF11662.8 AJD67576.1 - 0.24 11.3 1.8 9.7 6.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3263) Ribosomal_S5_C PF03719.15 AJD67577.1 - 3.4e-28 96.9 1.3 5.2e-28 96.3 1.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 AJD67577.1 - 7.6e-26 89.9 2.0 1.5e-25 88.9 2.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 AJD67578.1 - 4.6e-13 48.8 1.0 5.6e-13 48.6 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 AJD67579.1 - 2.1e-26 93.1 2.9 2.8e-26 92.7 2.9 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 AJD67580.1 - 2.1e-107 359.0 17.7 2.7e-107 358.6 17.7 1.1 1 0 0 1 1 1 1 SecY translocase DUF3667 PF12412.8 AJD67580.1 - 0.0038 16.7 0.0 0.025 14.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3667) Phage_holin_2_1 PF04971.12 AJD67580.1 - 5.4 7.1 5.5 1.1 9.3 0.1 2.6 3 0 0 3 3 3 0 Bacteriophage P21 holin S Ribosomal_S13 PF00416.22 AJD67581.1 - 5.2e-32 110.9 2.6 2.9e-30 105.3 2.6 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 AJD67581.1 - 0.0067 15.2 0.0 0.0074 15.1 0.0 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DNA_pol_lambd_f PF10391.9 AJD67581.1 - 0.0087 15.9 0.0 0.016 15.0 0.0 1.7 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 AJD67581.1 - 0.039 14.6 0.0 0.063 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix domain Ribosomal_S11 PF00411.19 AJD67582.1 - 4.7e-50 168.6 0.6 5.7e-50 168.3 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_S4 PF00163.19 AJD67583.1 - 2.9e-31 108.2 3.9 4.7e-31 107.5 3.9 1.3 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 AJD67583.1 - 5.2e-18 64.5 0.0 8.6e-18 63.8 0.0 1.4 1 0 0 1 1 1 1 S4 domain Spatacsin_C PF14649.6 AJD67583.1 - 0.065 12.3 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Spatacsin C-terminus S4_2 PF13275.6 AJD67583.1 - 0.07 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 S4 domain RNA_pol_A_bac PF01000.26 AJD67584.1 - 8.7e-25 87.3 0.1 1.9e-24 86.2 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 AJD67584.1 - 1.1e-24 85.6 0.0 1.9e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_CTD PF03118.15 AJD67584.1 - 7.4e-24 83.3 0.1 1.4e-23 82.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L_2 PF13656.6 AJD67584.1 - 8.2e-05 22.3 0.2 0.44 10.4 0.0 2.9 3 0 0 3 3 3 2 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L17 PF01196.19 AJD67585.1 - 1e-32 112.9 0.0 1.2e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L17 DsbB PF02600.16 AJD67586.1 - 3.5e-41 141.0 10.0 4.1e-41 140.8 10.0 1.0 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB TonB_dep_Rec PF00593.24 AJD67587.1 - 1.5e-36 127.3 48.5 1.5e-36 127.3 48.5 1.7 1 1 1 2 2 2 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD67587.1 - 5.4e-06 25.6 9.4 6.3e-06 25.4 7.0 2.2 2 1 0 2 2 2 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD67587.1 - 4e-05 24.1 0.3 0.00014 22.4 0.1 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain DAHP_synth_2 PF01474.16 AJD67588.1 - 4.7e-187 621.8 0.0 5.4e-187 621.7 0.0 1.0 1 0 0 1 1 1 1 Class-II DAHP synthetase family MS_channel PF00924.18 AJD67589.1 - 1.2e-23 83.8 0.1 2e-23 83.0 0.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF1761 PF08570.10 AJD67589.1 - 0.36 11.1 4.2 0.31 11.3 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1761) DUF4231 PF14015.6 AJD67589.1 - 1 9.8 2.7 4.3 7.9 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) Amidase PF01425.21 AJD67590.1 - 1.9e-99 333.7 0.6 2.7e-99 333.2 0.6 1.2 1 0 0 1 1 1 1 Amidase Pilus_CpaD PF09476.10 AJD67590.1 - 0.017 14.9 0.2 0.04 13.6 0.2 1.6 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) DUF2127 PF09900.9 AJD67591.1 - 2.4e-35 121.8 8.0 2.7e-35 121.6 8.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2127) GTP_EFTU PF00009.27 AJD67592.1 - 1.2e-54 184.8 0.0 1.9e-54 184.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 AJD67592.1 - 3.1e-23 81.6 0.0 6.5e-23 80.6 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AJD67592.1 - 2.6e-10 40.5 2.4 5.6e-10 39.5 2.4 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AJD67592.1 - 2.1e-06 27.8 0.0 9.8e-06 25.6 0.1 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase EFG_II PF14492.6 AJD67592.1 - 2.5e-05 24.3 0.1 6e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II Septin PF00735.18 AJD67592.1 - 0.00065 19.1 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 Septin AIG1 PF04548.16 AJD67592.1 - 0.011 15.1 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family FeoB_N PF02421.18 AJD67592.1 - 0.014 15.0 0.0 0.15 11.6 0.0 2.8 1 1 0 1 1 1 0 Ferrous iron transport protein B DUF4190 PF13828.6 AJD67592.1 - 0.14 11.9 0.1 0.4 10.5 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4190) Pro_isomerase PF00160.21 AJD67593.1 - 2.8e-50 170.7 0.0 3.3e-50 170.4 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Afi1 PF07792.12 AJD67593.1 - 0.065 13.7 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 Docking domain of Afi1 for Arf3 in vesicle trafficking Ldh_1_N PF00056.23 AJD67594.1 - 2.3e-35 121.7 0.1 3.4e-35 121.2 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 AJD67594.1 - 3.2e-31 108.5 0.0 1.5e-30 106.3 0.0 1.8 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain TPP_enzyme_M PF00205.22 AJD67594.1 - 0.045 13.5 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Glyco_hydro_3_C PF01915.22 AJD67594.1 - 0.065 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DAP10 PF07213.11 AJD67594.1 - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 DAP10 membrane protein GST_C PF00043.25 AJD67595.1 - 1.3e-09 38.2 0.1 2.5e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 AJD67595.1 - 4.3e-09 36.6 0.0 7.6e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD67595.1 - 9.9e-07 29.0 0.0 2.3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AJD67595.1 - 8e-06 26.2 0.0 1.5e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AJD67595.1 - 0.0001 22.4 0.0 0.00017 21.7 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD67595.1 - 0.00013 21.9 0.5 0.00023 21.1 0.5 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Tom37 PF10568.9 AJD67595.1 - 0.018 15.4 0.0 0.041 14.2 0.0 1.6 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein Hydrolase_2 PF07486.12 AJD67596.1 - 3.9e-17 63.0 0.0 4.6e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Cell Wall Hydrolase Oxidored_FMN PF00724.20 AJD67597.1 - 1.3e-74 251.6 0.0 1.7e-74 251.2 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 AJD67597.1 - 2.2e-21 76.4 0.0 5.6e-21 75.0 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD67597.1 - 3.5e-10 40.0 1.7 5.7e-10 39.3 0.2 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 AJD67597.1 - 1e-09 38.8 1.5 2.5e-05 24.7 0.2 3.7 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD67597.1 - 3.2e-08 32.7 0.4 1.2e-07 30.8 0.4 1.9 1 1 1 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 AJD67597.1 - 1.1e-07 31.4 0.3 0.0087 15.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AJD67597.1 - 1.4e-06 28.0 0.1 2.1e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD67597.1 - 1.2e-05 24.6 1.5 1.2e-05 24.6 1.5 1.8 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 AJD67597.1 - 2.1e-05 24.3 12.0 9.8e-05 22.1 0.9 4.1 4 0 0 4 4 4 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 AJD67597.1 - 7.4e-05 22.7 0.8 0.002 18.1 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 AJD67597.1 - 0.00034 19.9 0.5 0.00092 18.5 0.0 1.8 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 AJD67597.1 - 0.00041 19.6 0.1 0.00064 18.9 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 AJD67597.1 - 0.00078 18.8 1.4 0.027 13.7 0.1 2.4 2 0 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 AJD67597.1 - 0.0015 18.2 0.7 0.0048 16.5 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 AJD67597.1 - 0.0032 17.4 1.3 0.039 13.9 0.0 2.9 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.24 AJD67597.1 - 0.0034 16.7 0.2 0.0061 15.9 0.2 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 AJD67597.1 - 0.0034 16.7 0.2 0.0034 16.7 0.2 2.0 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DUF364 PF04016.12 AJD67597.1 - 0.0052 16.4 0.1 0.53 9.9 0.0 3.2 3 0 0 3 3 3 1 Putative heavy-metal chelation MR_MLE_C PF13378.6 AJD67597.1 - 0.011 15.3 0.7 0.028 14.0 0.7 1.6 1 0 0 1 1 1 0 Enolase C-terminal domain-like FMO-like PF00743.19 AJD67597.1 - 0.013 14.0 0.0 0.023 13.2 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like 2-Hacid_dh_C PF02826.19 AJD67597.1 - 0.018 14.4 0.2 7.7 5.8 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 AJD67597.1 - 0.027 13.5 0.3 0.045 12.8 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Dus PF01207.17 AJD67597.1 - 0.17 11.0 0.5 0.62 9.1 0.1 2.2 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) NAD_binding_9 PF13454.6 AJD67597.1 - 0.19 11.7 0.1 0.19 11.7 0.1 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding ADH_zinc_N_2 PF13602.6 AJD67598.1 - 1.1e-19 71.8 0.0 2.1e-19 70.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 AJD67598.1 - 1.8e-13 50.6 0.0 3.7e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD67598.1 - 9.9e-09 35.1 0.0 1.9e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 AJD67598.1 - 0.0096 15.2 0.1 0.018 14.4 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 AJD67598.1 - 0.17 12.1 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain OmpA PF00691.20 AJD67599.1 - 5.4e-23 81.2 0.0 8.7e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 OmpA family OMP_b-brl PF13505.6 AJD67599.1 - 4.2e-20 72.6 2.5 6.7e-20 72.0 2.5 1.3 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain DUF3575 PF12099.8 AJD67599.1 - 0.016 14.5 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3575) TSP_3 PF02412.18 AJD67599.1 - 0.26 11.0 10.7 0.62 9.8 10.7 1.7 1 0 0 1 1 1 0 Thrombospondin type 3 repeat Methyltransf_23 PF13489.6 AJD67600.1 - 0.14 11.9 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain PseudoU_synth_2 PF00849.22 AJD67601.1 - 1.3e-17 64.4 0.0 2.9e-17 63.2 0.0 1.6 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AJD67601.1 - 1e-08 34.7 0.0 2.4e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 S4 domain HNH_5 PF14279.6 AJD67602.1 - 0.00015 21.5 0.4 0.1 12.4 0.1 2.7 2 1 0 2 2 2 2 HNH endonuclease HNH PF01844.23 AJD67602.1 - 0.001 19.2 1.6 0.0046 17.1 1.6 2.0 1 1 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 AJD67602.1 - 0.021 14.7 0.0 0.046 13.6 0.0 1.6 1 1 0 1 1 1 0 HNH endonuclease DUF3025 PF11227.8 AJD67602.1 - 0.054 13.3 0.1 0.062 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3025) Aminotran_1_2 PF00155.21 AJD67603.1 - 3e-64 217.5 0.0 3.5e-64 217.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AJD67603.1 - 8e-05 22.1 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 AJD67603.1 - 8.5e-05 21.7 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 AJD67603.1 - 0.00022 20.0 0.1 0.013 14.1 0.1 2.3 2 1 0 2 2 2 2 Aminotransferase class-III DegT_DnrJ_EryC1 PF01041.17 AJD67603.1 - 0.0096 15.3 0.5 0.014 14.7 0.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HATPase_c_5 PF14501.6 AJD67603.1 - 0.06 13.3 0.0 0.36 10.7 0.0 2.2 3 0 0 3 3 3 0 GHKL domain SBP_bac_11 PF13531.6 AJD67604.1 - 7.6e-43 146.9 0.8 1e-42 146.4 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AJD67604.1 - 1.2e-16 61.6 1.0 1.2e-16 61.6 1.0 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AJD67604.1 - 2.3e-07 30.5 0.0 1.7e-06 27.6 0.0 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AJD67604.1 - 4.9e-07 29.9 0.0 2e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 AJD67604.1 - 0.00013 21.2 0.0 0.00022 20.4 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 AJD67605.1 - 1.9e-26 93.0 14.2 1.9e-26 93.0 14.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 AJD67606.1 - 3.7e-15 56.2 9.6 3.7e-15 56.2 9.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.20 AJD67606.1 - 8 5.9 6.6 1.6 8.2 2.0 2.0 1 1 1 2 2 2 0 E1-E2 ATPase ABC_tran PF00005.27 AJD67607.1 - 2.6e-34 118.7 0.0 4.1e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD67607.1 - 3.2e-11 43.6 0.3 3.5e-05 23.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_3 PF12857.7 AJD67607.1 - 5.5e-08 32.6 2.6 6e-08 32.5 0.4 2.3 2 0 0 2 2 2 1 TOBE-like domain CysA_C_terminal PF17850.1 AJD67607.1 - 3.1e-07 30.8 0.6 3.1e-07 30.8 0.6 2.9 4 0 0 4 4 2 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 AJD67607.1 - 5.4e-07 29.7 1.0 0.00017 21.7 0.1 2.7 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 AJD67607.1 - 9.6e-06 25.2 0.0 2.9e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD67607.1 - 2.7e-05 24.6 1.6 0.00012 22.5 1.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AJD67607.1 - 0.00024 21.4 0.2 0.00098 19.4 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD67607.1 - 0.0026 17.9 0.0 0.0059 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 AJD67607.1 - 0.0032 17.2 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 AJD67607.1 - 0.0033 17.2 0.1 0.016 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AJD67607.1 - 0.0035 17.1 0.0 0.0068 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 AJD67607.1 - 0.0055 16.7 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain NACHT PF05729.12 AJD67607.1 - 0.0073 16.2 1.0 0.12 12.3 0.1 2.4 2 0 0 2 2 2 1 NACHT domain SbcCD_C PF13558.6 AJD67607.1 - 0.0077 16.4 0.1 0.059 13.6 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 AJD67607.1 - 0.0078 16.5 0.1 0.026 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 AJD67607.1 - 0.013 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 AJD67607.1 - 0.014 15.0 2.4 0.21 11.1 2.4 2.3 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 AJD67607.1 - 0.019 14.4 0.1 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA PF00004.29 AJD67607.1 - 0.02 15.4 0.0 0.19 12.2 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 AJD67607.1 - 0.042 14.3 0.0 0.074 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 AJD67607.1 - 0.079 12.7 0.0 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 AJD67607.1 - 0.1 12.6 0.1 0.53 10.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 AJD67607.1 - 0.1 11.9 0.0 14 5.0 0.0 2.1 2 0 0 2 2 2 0 KaiC SRP54 PF00448.22 AJD67607.1 - 0.12 12.0 0.0 0.3 10.7 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CbiA PF01656.23 AJD67607.1 - 0.13 12.3 0.1 0.43 10.6 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 AJD67607.1 - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 AJD67607.1 - 0.15 12.0 0.1 4.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase ABC_ATPase PF09818.9 AJD67607.1 - 0.17 10.6 0.0 9 5.0 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Roc PF08477.13 AJD67607.1 - 0.17 12.1 0.0 4.9 7.4 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 AJD67607.1 - 0.21 11.6 0.1 0.44 10.6 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 AJD67607.1 - 0.29 10.3 0.0 0.36 9.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Gcw_chp PF09694.10 AJD67608.1 - 1.3e-24 87.4 14.8 1.6e-24 87.2 14.8 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (Gcw_chp) ADH_N PF08240.12 AJD67609.1 - 1.3e-33 115.2 0.2 1.3e-33 115.2 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AJD67609.1 - 1.5e-27 96.2 0.2 2.3e-27 95.6 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 AJD67609.1 - 2.1e-07 30.6 0.1 4.9e-07 29.4 0.1 1.6 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 AJD67609.1 - 0.00081 20.5 0.0 0.0014 19.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 AJD67609.1 - 0.003 16.9 0.3 0.0048 16.2 0.3 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 AJD67609.1 - 0.0071 15.6 0.1 0.011 15.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 AJD67609.1 - 0.099 11.9 0.6 0.14 11.3 0.6 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD67609.1 - 0.36 11.4 1.5 0.92 10.1 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TonB_dep_Rec PF00593.24 AJD67610.1 - 5.2e-40 138.7 41.2 5.2e-40 138.7 41.2 2.6 1 1 2 3 3 3 1 TonB dependent receptor Plug PF07715.15 AJD67610.1 - 4.8e-11 43.2 1.0 1.2e-10 41.9 1.0 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Phosphoesterase PF04185.14 AJD67611.1 - 4.2e-105 351.8 0.0 5.3e-105 351.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoesterase family DUF756 PF05506.12 AJD67611.1 - 1.2e-36 125.4 1.1 8.2e-22 77.9 0.4 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF756) TAT_signal PF10518.9 AJD67611.1 - 0.0055 16.5 1.8 0.0055 16.5 1.8 2.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S46 PF10459.9 AJD67612.1 - 1.3e-33 116.6 0.0 1.5e-33 116.5 0.0 1.0 1 0 0 1 1 1 1 Peptidase S46 Trypsin PF00089.26 AJD67612.1 - 0.0027 17.6 0.1 0.0028 17.5 0.1 1.1 1 0 0 1 1 1 1 Trypsin Trypsin_2 PF13365.6 AJD67612.1 - 0.021 15.7 0.0 0.023 15.6 0.0 1.2 1 0 0 1 1 1 0 Trypsin-like peptidase domain Peptidase_S46 PF10459.9 AJD67613.1 - 3.8e-22 78.7 0.0 4.1e-22 78.6 0.0 1.0 1 0 0 1 1 1 1 Peptidase S46 His_Phos_1 PF00300.22 AJD67614.1 - 9.1e-58 195.2 0.9 1e-57 195.0 0.9 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Mur_ligase_M PF08245.12 AJD67615.1 - 1.6e-10 41.3 0.0 3e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AJD67615.1 - 7.1e-07 29.4 1.2 3.3e-05 24.1 0.1 3.3 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain SPOR PF05036.13 AJD67616.1 - 3.9e-32 110.4 13.7 7.6e-17 61.5 2.2 2.3 2 0 0 2 2 2 2 Sporulation related domain Glyoxalase_3 PF13468.6 AJD67616.1 - 0.15 12.1 3.0 1.4 9.0 0.4 2.4 2 0 0 2 2 2 0 Glyoxalase-like domain Colicin_V PF02674.16 AJD67617.1 - 8.1e-30 103.7 14.6 1.1e-29 103.3 14.6 1.1 1 0 0 1 1 1 1 Colicin V production protein GATase_6 PF13522.6 AJD67618.1 - 1.3e-15 57.8 0.0 2.6e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 AJD67618.1 - 1.5e-13 50.8 0.0 3.4e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 AJD67618.1 - 0.0012 18.3 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 AJD67618.1 - 0.016 14.1 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II GATase_2 PF00310.21 AJD67618.1 - 0.22 10.2 0.9 0.76 8.4 0.1 2.2 2 1 1 3 3 3 0 Glutamine amidotransferases class-II DUF455 PF04305.14 AJD67619.1 - 7.4e-99 330.3 0.0 8.5e-99 330.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF455) Reprolysin_5 PF13688.6 AJD67621.1 - 4.3e-27 95.5 4.8 6.4e-27 95.0 4.8 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 AJD67621.1 - 3.9e-18 66.2 1.3 6.5e-18 65.4 1.3 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 AJD67621.1 - 8.1e-10 38.7 5.5 1.1e-09 38.2 5.5 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 AJD67621.1 - 0.13 12.1 1.3 0.31 10.9 1.3 1.7 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallophos PF00149.28 AJD67623.1 - 3.1e-09 37.6 0.0 8.3e-09 36.2 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AJD67623.1 - 2.8e-06 27.6 0.6 0.00018 21.7 0.6 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PAP2 PF01569.21 AJD67625.1 - 9e-20 70.8 6.1 9e-20 70.8 6.1 1.4 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 AJD67625.1 - 8.7e-06 25.5 13.3 4.2e-05 23.3 13.4 1.9 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 AJD67625.1 - 0.00047 20.6 0.5 0.01 16.3 0.5 2.3 2 0 0 2 2 2 1 PAP2 superfamily C-terminal Glycos_transf_1 PF00534.20 AJD67626.1 - 2.3e-26 92.4 0.0 3.5e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AJD67626.1 - 5.2e-25 88.4 0.8 5.2e-25 88.4 0.8 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 AJD67626.1 - 1.1e-24 87.3 0.0 3e-24 86.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD67626.1 - 2.3e-17 63.9 10.9 2.3e-17 63.9 10.9 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AJD67626.1 - 4.6e-11 43.0 0.1 8.9e-11 42.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AJD67626.1 - 7.2e-06 26.1 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 AJD67626.1 - 0.057 13.1 0.2 0.14 11.9 0.1 1.6 2 0 0 2 2 2 0 Starch synthase catalytic domain Ppx-GppA PF02541.16 AJD67627.1 - 6e-65 219.5 0.0 7.7e-65 219.1 0.0 1.1 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 AJD67627.1 - 0.21 12.1 0.1 7 7.1 0.0 2.9 3 1 0 3 3 3 0 Cell division protein FtsA PP_kinase_C_1 PF17941.1 AJD67628.1 - 9.4e-73 243.2 0.1 3.9e-72 241.2 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 AJD67628.1 - 1.5e-65 219.8 0.0 6.2e-65 217.9 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 AJD67628.1 - 9.2e-62 208.2 0.0 1.5e-61 207.5 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 AJD67628.1 - 1.4e-30 105.7 0.0 2.9e-30 104.7 0.0 1.6 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 AJD67628.1 - 5.6e-12 45.7 0.0 4.1e-08 33.2 0.0 2.8 2 1 0 2 2 2 2 PLD-like domain Pyr_redox PF00070.27 AJD67628.1 - 0.16 12.6 0.1 0.51 10.9 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HATPase_c PF02518.26 AJD67629.1 - 7.7e-23 81.1 0.0 1.5e-22 80.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PhoR PF11808.8 AJD67629.1 - 7.2e-21 74.4 10.8 1.6e-20 73.3 9.7 2.1 2 0 0 2 2 2 1 Phosphate regulon sensor protein PhoR HisKA PF00512.25 AJD67629.1 - 2.7e-18 65.8 0.9 8.6e-18 64.2 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 AJD67629.1 - 0.00035 20.5 0.0 0.00096 19.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD67629.1 - 0.001 19.1 0.0 0.0039 17.2 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 AJD67629.1 - 0.0021 18.0 0.0 0.0048 16.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 AJD67629.1 - 0.08 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Latarcin PF10279.9 AJD67629.1 - 0.15 12.5 1.9 0.47 10.9 0.1 2.3 2 0 0 2 2 2 0 Latarcin precursor LapA_dom PF06305.11 AJD67629.1 - 0.99 9.3 7.9 0.096 12.5 2.2 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Trans_reg_C PF00486.28 AJD67630.1 - 7.4e-26 90.0 0.0 1.7e-25 88.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 AJD67630.1 - 4.6e-25 88.0 0.0 6.7e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Peptidase_M48 PF01435.18 AJD67631.1 - 5.2e-38 130.8 0.8 9.3e-38 130.0 0.2 1.8 2 0 0 2 2 2 1 Peptidase family M48 TPR_19 PF14559.6 AJD67631.1 - 0.00048 20.6 15.6 0.0051 17.3 1.6 4.4 1 1 2 4 4 4 2 Tetratricopeptide repeat EH_Signature PF15611.6 AJD67631.1 - 0.002 17.6 2.0 0.0028 17.2 2.0 1.2 1 0 0 1 1 1 1 EH_Signature domain DUF4157 PF13699.6 AJD67631.1 - 0.025 14.8 0.3 0.084 13.1 0.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) TPR_20 PF14561.6 AJD67631.1 - 0.035 14.4 6.7 0.35 11.2 0.7 2.9 2 1 0 2 2 2 0 Tetratricopeptide repeat BTAD PF03704.17 AJD67631.1 - 0.077 13.4 9.6 0.63 10.5 0.2 3.6 2 1 2 4 4 4 0 Bacterial transcriptional activator domain Glutaredoxin PF00462.24 AJD67632.1 - 5.8e-17 61.7 0.0 7.1e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin DSBA PF01323.20 AJD67632.1 - 0.00065 19.5 0.2 0.0028 17.5 0.0 1.8 1 1 1 2 2 2 1 DSBA-like thioredoxin domain DUF836 PF05768.14 AJD67632.1 - 0.011 16.1 0.0 0.014 15.8 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) SH3BGR PF04908.15 AJD67632.1 - 0.098 12.8 0.0 0.19 11.9 0.0 1.5 1 1 0 1 1 1 0 SH3-binding, glutamic acid-rich protein Thioredoxin_2 PF13098.6 AJD67632.1 - 0.12 12.9 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain GST_N_3 PF13417.6 AJD67632.1 - 0.15 12.4 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain CMD PF02627.20 AJD67633.1 - 7.4e-17 61.2 0.0 1e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Shikimate_dh_N PF08501.11 AJD67633.1 - 0.025 14.8 0.0 0.043 14.1 0.0 1.5 1 1 0 1 1 1 0 Shikimate dehydrogenase substrate binding domain Iso_dh PF00180.20 AJD67634.1 - 6e-105 351.2 0.0 7.2e-105 351.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase BaxI_1 PF12811.7 AJD67635.1 - 8e-78 261.2 14.1 8.9e-78 261.0 14.1 1.0 1 0 0 1 1 1 1 Bax inhibitor 1 like Bax1-I PF01027.20 AJD67635.1 - 4.6e-10 39.7 22.1 5.6e-10 39.4 22.1 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 PMAIP1 PF15150.6 AJD67636.1 - 0.15 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Phorbol-12-myristate-13-acetate-induced Phage_holin_3_6 PF07332.11 AJD67636.1 - 0.5 10.4 8.1 0.84 9.7 8.1 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III rve PF00665.26 AJD67637.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD67637.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD67637.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD67638.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD67638.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD67638.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD67638.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD67638.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD67638.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD67638.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD67638.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD67638.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD67638.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD67638.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD67638.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD67638.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD67638.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD67638.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD67638.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD67638.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD67638.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD67638.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD67638.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD67638.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein Phage_integrase PF00589.22 AJD67639.1 - 0.0013 18.5 0.0 0.0024 17.7 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 AJD67639.1 - 0.014 15.7 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 AJD67639.1 - 0.096 13.2 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF3042 PF11240.8 AJD67641.1 - 0.54 10.3 2.5 0.69 10.0 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3042) DUF4863 PF16155.5 AJD67644.1 - 0.053 13.4 0.1 0.14 12.0 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4863) ArdA PF07275.11 AJD67645.1 - 1.6e-36 126.4 1.0 1.9e-36 126.1 1.0 1.1 1 0 0 1 1 1 1 Antirestriction protein (ArdA) DnaJ_CXXCXGXG PF00684.19 AJD67645.1 - 8.9e-05 22.8 1.4 0.00016 22.0 1.4 1.3 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 AJD67645.1 - 0.0024 17.8 7.5 0.18 11.8 0.7 2.5 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein Titin_Ig-rpts PF06582.12 AJD67645.1 - 0.0047 16.8 0.3 0.0088 16.0 0.3 1.4 1 0 0 1 1 1 1 Titin repeat DUF3861 PF12977.7 AJD67645.1 - 0.0097 16.0 0.1 0.021 15.0 0.1 1.5 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3861) Zn-ribbon_8 PF09723.10 AJD67645.1 - 0.027 14.6 4.3 0.44 10.7 0.2 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 AJD67645.1 - 0.028 14.8 2.9 0.68 10.4 0.1 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar Transferrin PF00405.17 AJD67645.1 - 0.076 12.2 0.1 0.097 11.8 0.1 1.2 1 0 0 1 1 1 0 Transferrin zinc_ribbon_9 PF14369.6 AJD67645.1 - 0.13 12.6 3.6 2.8 8.3 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon Prim_Zn_Ribbon PF08273.12 AJD67645.1 - 0.61 10.4 10.8 0.96 9.8 0.6 3.4 3 0 0 3 3 3 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 AJD67645.1 - 3 7.4 6.3 2.9 7.4 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.11 AJD67645.1 - 3 8.0 7.2 7.3 6.8 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) HTH_8 PF02954.19 AJD67646.1 - 0.0016 18.2 0.1 0.044 13.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family DUF3168 PF11367.8 AJD67646.1 - 0.033 14.4 0.2 0.033 14.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3168) YpM PF09144.10 AJD67646.1 - 0.19 11.9 0.0 0.21 11.8 0.0 1.2 1 1 0 1 1 1 0 Yersinia pseudo-tuberculosis mitogen NinD PF17466.2 AJD67650.1 - 0.11 12.6 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function Phage_lysozyme PF00959.19 AJD67652.1 - 5.4e-16 59.0 0.0 6.2e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Phage lysozyme Pox_A32 PF04665.12 AJD67652.1 - 0.18 11.2 0.0 0.22 10.9 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A32 protein Terminase_6 PF03237.15 AJD67655.1 - 0.035 13.8 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Terminase-like family Helicase_RecD PF05127.14 AJD67655.1 - 0.049 13.5 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 Helicase Terminase_6C PF17289.2 AJD67655.1 - 0.15 12.2 0.0 0.59 10.2 0.0 2.0 1 1 0 1 1 1 0 Terminase RNaseH-like domain Phage_holin_3_2 PF04550.12 AJD67657.1 - 2.2e-15 57.0 3.9 2.4e-15 56.8 3.9 1.0 1 0 0 1 1 1 1 Phage holin family 2 FxsA PF04186.13 AJD67657.1 - 0.12 12.5 4.7 0.18 11.9 4.7 1.5 1 1 0 1 1 1 0 FxsA cytoplasmic membrane protein Utp14 PF04615.13 AJD67659.1 - 0.068 11.7 7.5 0.096 11.2 7.5 1.1 1 0 0 1 1 1 0 Utp14 protein Mucin15 PF15672.5 AJD67659.1 - 0.23 10.9 4.4 0.41 10.1 4.4 1.3 1 0 0 1 1 1 0 Cell-membrane associated Mucin15 FAM196 PF15265.6 AJD67659.1 - 0.68 9.4 7.9 1.1 8.7 7.9 1.3 1 0 0 1 1 1 0 FAM196 family Macoilin PF09726.9 AJD67659.1 - 5.6 5.4 6.9 8.2 4.8 6.9 1.2 1 0 0 1 1 1 0 Macoilin family Raftlin PF15250.6 AJD67659.1 - 7.8 5.1 6.3 11 4.6 6.3 1.1 1 0 0 1 1 1 0 Raftlin DUF1983 PF09327.11 AJD67660.1 - 0.001 19.1 0.0 0.0039 17.2 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1983) HTH_Tnp_1 PF01527.20 AJD67661.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD67661.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD67661.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD67661.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD67661.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD67661.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD67661.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD67661.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD67661.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD67661.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD67661.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD67661.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD67661.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD67661.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD67661.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD67661.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD67661.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD67661.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD67661.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD67661.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD67661.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD67662.1 - 2.7e-32 111.5 0.3 5e-32 110.6 0.1 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD67662.1 - 1.1e-14 54.3 1.9 3.3e-14 52.7 1.9 1.8 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD67662.1 - 2.4e-12 46.8 0.1 4.4e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD67662.1 - 2.2e-10 40.1 0.0 1.2e-09 37.8 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD67662.1 - 2.5e-05 24.5 0.0 3.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AJD67662.1 - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease RPOL_N PF14700.6 AJD67663.1 - 4.5e-08 32.9 0.0 5.7e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 DNA-directed RNA polymerase N-terminal DUF4287 PF14117.6 AJD67663.1 - 0.007 16.5 0.2 0.014 15.6 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4287) SAA PF00277.18 AJD67663.1 - 0.095 13.2 0.1 0.17 12.4 0.1 1.5 1 0 0 1 1 1 0 Serum amyloid A protein HATPase_c PF02518.26 AJD67664.1 - 9.9e-15 55.0 0.0 1.7e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 AJD67664.1 - 0.0038 17.1 0.2 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3203 PF11462.8 AJD67664.1 - 0.008 16.3 2.4 1.1 9.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3203) HisKA PF00512.25 AJD67664.1 - 0.057 13.5 0.3 0.057 13.5 0.3 2.2 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AJD67664.1 - 0.079 12.9 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Ribosomal_L17 PF01196.19 AJD67664.1 - 0.11 13.3 0.3 0.29 12.0 0.2 1.9 2 1 0 2 2 2 0 Ribosomal protein L17 PAS_4 PF08448.10 AJD67665.1 - 6.3e-17 61.8 0.0 8e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 AJD67665.1 - 7.9e-08 32.5 0.0 9.6e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD67665.1 - 0.0017 18.3 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 PAS fold Trigger_C PF05698.14 AJD67666.1 - 6.6e-39 133.5 5.1 2.8e-36 125.0 2.5 2.8 3 0 0 3 3 3 2 Bacterial trigger factor protein (TF) C-terminus Trigger_N PF05697.13 AJD67666.1 - 4e-36 124.5 0.1 4.2e-35 121.1 0.0 2.6 3 0 0 3 3 3 1 Bacterial trigger factor protein (TF) FKBP_C PF00254.28 AJD67666.1 - 0.026 14.8 0.0 0.07 13.5 0.0 1.7 1 0 0 1 1 1 0 FKBP-type peptidyl-prolyl cis-trans isomerase CLP_protease PF00574.23 AJD67667.1 - 7.8e-87 289.9 0.1 9.1e-87 289.7 0.1 1.0 1 0 0 1 1 1 1 Clp protease AAA_2 PF07724.14 AJD67668.1 - 3.4e-50 170.5 0.0 5.8e-50 169.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) zf-C4_ClpX PF06689.13 AJD67668.1 - 2.4e-20 72.1 4.6 2.4e-20 72.1 4.6 2.1 2 0 0 2 2 1 1 ClpX C4-type zinc finger ClpB_D2-small PF10431.9 AJD67668.1 - 1.6e-17 63.3 0.8 4.7e-17 61.8 0.1 2.1 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 AJD67668.1 - 3.4e-16 59.9 0.1 1.6e-15 57.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD67668.1 - 2.8e-07 30.6 0.0 2.9e-06 27.3 0.1 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AJD67668.1 - 4.7e-06 26.9 0.2 4.4e-05 23.8 0.2 2.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 AJD67668.1 - 7.7e-06 25.4 0.2 0.00096 18.6 0.1 2.9 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 AJD67668.1 - 9.3e-06 25.5 0.1 3.2e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 AJD67668.1 - 2.6e-05 23.4 0.0 4.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 AJD67668.1 - 9.4e-05 22.2 0.0 0.047 13.4 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 AJD67668.1 - 0.00048 20.7 0.2 0.0029 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 AJD67668.1 - 0.00074 19.1 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 AJD67668.1 - 0.00084 19.5 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 AJD67668.1 - 0.0012 19.3 0.1 0.0037 17.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 AJD67668.1 - 0.0014 17.8 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 AJD67668.1 - 0.0026 17.8 0.0 0.0069 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 AJD67668.1 - 0.0028 17.4 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 AJD67668.1 - 0.0031 17.3 0.0 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AJD67668.1 - 0.0032 18.0 0.0 0.0091 16.5 0.0 2.0 2 1 0 2 2 1 1 ABC transporter TIP49 PF06068.13 AJD67668.1 - 0.004 16.4 0.1 0.01 15.1 0.1 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 AJD67668.1 - 0.0092 16.1 0.0 0.023 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 AJD67668.1 - 0.0093 15.9 0.1 0.13 12.1 0.0 2.6 3 0 0 3 3 2 1 NACHT domain RNA_helicase PF00910.22 AJD67668.1 - 0.014 15.8 0.0 0.051 14.0 0.0 2.0 1 1 0 1 1 1 0 RNA helicase ResIII PF04851.15 AJD67668.1 - 0.014 15.4 0.2 0.11 12.5 0.1 2.4 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit TsaE PF02367.17 AJD67668.1 - 0.021 14.8 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF1296 PF06972.11 AJD67668.1 - 0.028 14.5 0.0 0.079 13.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) AAA_19 PF13245.6 AJD67668.1 - 0.029 14.7 0.0 0.35 11.2 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 AJD67668.1 - 0.038 13.7 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.6 AJD67668.1 - 0.038 13.8 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 AJD67668.1 - 0.039 13.3 5.1 2 7.7 0.1 3.0 2 1 1 3 3 3 0 KaiC AAA_30 PF13604.6 AJD67668.1 - 0.07 12.8 0.0 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 AJD67668.1 - 0.072 12.0 0.0 0.14 11.1 0.0 1.5 1 0 0 1 1 1 0 PrkA AAA domain AAA_23 PF13476.6 AJD67668.1 - 0.078 13.5 0.3 0.15 12.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AJD67668.1 - 0.079 13.2 0.0 0.37 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_8 PF12780.7 AJD67668.1 - 0.083 12.2 0.0 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 DEAD PF00270.29 AJD67668.1 - 0.089 12.6 0.2 0.74 9.6 0.1 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase PhoH PF02562.16 AJD67668.1 - 0.12 11.8 0.0 0.3 10.5 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 AJD67668.1 - 0.13 11.8 0.2 0.69 9.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 AJD67668.1 - 0.17 11.0 0.0 0.58 9.3 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit Lon_C PF05362.13 AJD67669.1 - 1.9e-94 315.0 0.2 3e-94 314.3 0.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 AJD67669.1 - 1.8e-41 142.4 0.1 4.3e-41 141.1 0.1 1.6 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 AJD67669.1 - 1.7e-18 67.4 0.0 6.2e-18 65.5 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD67669.1 - 1.1e-08 35.2 0.0 2.4e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 AJD67669.1 - 3.8e-06 26.7 0.3 8.9e-06 25.6 0.1 1.8 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase AAA_PrkA PF08298.11 AJD67669.1 - 5.3e-06 25.6 0.0 1e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_16 PF13191.6 AJD67669.1 - 3.6e-05 24.2 0.3 0.00061 20.2 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain IstB_IS21 PF01695.17 AJD67669.1 - 0.001 18.8 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein RuvB_N PF05496.12 AJD67669.1 - 0.0012 18.6 0.0 0.0043 16.8 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 AJD67669.1 - 0.0028 17.9 0.1 0.049 13.9 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AJD67669.1 - 0.0041 17.7 0.2 0.013 16.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 AJD67669.1 - 0.0046 17.0 0.0 0.0095 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AJD67669.1 - 0.019 14.5 0.2 7.6 6.1 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 AJD67669.1 - 0.042 14.0 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_3 PF07726.11 AJD67669.1 - 0.045 13.6 0.0 0.13 12.1 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 AJD67669.1 - 0.047 13.8 0.2 0.43 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 AJD67669.1 - 0.062 13.2 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 AJD67669.1 - 0.067 13.1 0.0 0.54 10.1 0.0 2.3 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 AJD67669.1 - 0.089 12.0 0.1 0.25 10.5 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 AJD67669.1 - 0.096 12.6 0.2 1.6 8.6 0.1 2.6 1 1 1 2 2 2 0 NTPase ABC_tran PF00005.27 AJD67669.1 - 0.12 12.9 0.2 0.88 10.1 0.0 2.4 2 1 0 2 2 2 0 ABC transporter Viral_helicase1 PF01443.18 AJD67669.1 - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 AJD67669.1 - 0.17 12.3 0.0 0.4 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 AJD67669.1 - 0.19 11.7 0.0 0.48 10.4 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Bac_DNA_binding PF00216.21 AJD67670.1 - 1.2e-34 118.4 0.5 1.3e-34 118.3 0.5 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AJD67670.1 - 5.7e-07 29.7 0.0 6.1e-07 29.6 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 AJD67670.1 - 8.7e-06 25.5 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_2 PF18289.1 AJD67670.1 - 0.00026 21.1 0.1 0.00035 20.7 0.1 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-CCDC81_euk_1 PF14908.6 AJD67670.1 - 0.068 13.3 0.0 0.071 13.3 0.0 1.1 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 Rotamase_2 PF13145.6 AJD67671.1 - 4.1e-35 121.2 21.7 1e-21 78.0 3.3 4.6 3 1 1 4 4 4 4 PPIC-type PPIASE domain Rotamase_3 PF13616.6 AJD67671.1 - 1.1e-31 109.7 5.4 7.6e-30 103.8 0.2 2.7 3 0 0 3 3 3 2 PPIC-type PPIASE domain SurA_N_3 PF13624.6 AJD67671.1 - 1.4e-29 103.0 13.1 2.5e-24 85.9 1.0 3.4 4 0 0 4 4 4 2 SurA N-terminal domain Rotamase PF00639.21 AJD67671.1 - 3.4e-27 95.2 5.7 4.1e-26 91.8 0.2 3.0 2 0 0 2 2 2 1 PPIC-type PPIASE domain SurA_N_2 PF13623.6 AJD67671.1 - 5.7e-27 94.4 0.1 3.5e-26 91.8 0.0 2.5 2 1 0 2 2 2 1 SurA N-terminal domain SurA_N PF09312.11 AJD67671.1 - 0.00033 20.7 0.2 0.006 16.6 0.0 2.8 3 0 0 3 3 3 1 SurA N-terminal domain FAM209 PF15206.6 AJD67671.1 - 0.066 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 FAM209 family LysM PF01476.20 AJD67671.1 - 0.18 11.9 0.0 4.2 7.5 0.0 2.4 2 0 0 2 2 2 0 LysM domain SLT PF01464.20 AJD67673.1 - 5.5e-23 80.8 0.2 1.6e-22 79.4 0.0 1.8 2 0 0 2 2 2 1 Transglycosylase SLT domain LysM PF01476.20 AJD67673.1 - 5.3e-11 42.4 0.0 1.2e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 LysM domain HTH_7 PF02796.15 AJD67673.1 - 0.13 12.4 0.0 0.38 10.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HAGH_C PF16123.5 AJD67674.1 - 1.1e-26 93.1 0.1 1.6e-26 92.6 0.1 1.2 1 0 0 1 1 1 1 Hydroxyacylglutathione hydrolase C-terminus Lactamase_B PF00753.27 AJD67674.1 - 9.5e-20 71.4 2.6 7.6e-19 68.5 2.6 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD67674.1 - 1.2e-05 25.0 0.4 2.4e-05 24.0 0.4 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 AJD67674.1 - 0.0021 18.0 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 AJD67674.1 - 0.17 11.3 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Methyltransf_11 PF08241.12 AJD67675.1 - 0.023 15.4 0.0 0.034 14.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain RNase_H PF00075.24 AJD67676.1 - 2.1e-46 157.6 0.0 2.4e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 RNase H Atg29_N PF18388.1 AJD67676.1 - 0.078 12.8 0.4 0.14 12.0 0.4 1.4 1 0 0 1 1 1 0 Atg29 N-terminal domain RNase_T PF00929.24 AJD67677.1 - 1.7e-31 110.0 0.0 2.1e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DNA_pol_A_exo1 PF01612.20 AJD67677.1 - 0.011 15.5 0.0 0.14 11.9 0.0 2.2 2 1 0 2 2 2 0 3'-5' exonuclease RNase_H_2 PF13482.6 AJD67677.1 - 0.034 14.1 0.0 0.12 12.3 0.0 1.8 1 1 0 1 1 1 0 RNase_H superfamily PP2C_2 PF13672.6 AJD67678.1 - 1.7e-13 50.7 3.0 2.2e-13 50.3 2.5 1.4 1 1 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 AJD67678.1 - 8e-12 45.3 0.1 1.2e-10 41.5 0.0 2.0 2 0 0 2 2 2 1 Protein phosphatase 2C SpoIIE PF07228.12 AJD67678.1 - 8.7e-09 35.6 1.9 6.7e-08 32.7 1.9 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DUF4254 PF14063.6 AJD67679.1 - 0.00072 19.4 2.1 0.46 10.3 0.5 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF4254) CtIP_N PF10482.9 AJD67679.1 - 0.011 15.7 0.2 0.017 15.2 0.2 1.2 1 0 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain BBL5 PF07289.11 AJD67679.1 - 0.032 13.3 0.0 0.039 13.0 0.0 1.1 1 0 0 1 1 1 0 Bardet-Biedl syndrome 5 protein Miff PF05644.11 AJD67679.1 - 0.054 13.1 0.2 0.054 13.1 0.2 1.4 2 0 0 2 2 2 0 Mitochondrial and peroxisomal fission factor Mff Glyco_transf_9 PF01075.17 AJD67680.1 - 5.2e-43 147.2 0.0 6.6e-43 146.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) Kdo PF06293.14 AJD67681.1 - 2.6e-68 229.5 0.0 3.1e-68 229.2 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 AJD67681.1 - 2.8e-08 34.0 15.4 3.3e-06 27.2 2.4 3.2 1 1 2 3 3 3 2 Phosphotransferase enzyme family RIO1 PF01163.22 AJD67681.1 - 2.9e-08 33.5 0.0 4.7e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 AJD67681.1 - 0.18 11.1 0.0 0.24 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein kinase domain Lactamase_B_2 PF12706.7 AJD67682.1 - 6e-14 52.0 0.2 8.2e-14 51.6 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 AJD67682.1 - 1.2e-05 25.4 1.9 2.4e-05 24.4 1.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.15 AJD67682.1 - 0.055 12.6 0.1 0.075 12.1 0.1 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Mob_synth_C PF06463.13 AJD67683.1 - 2.9e-34 117.8 0.0 4.3e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 AJD67683.1 - 1.6e-24 87.2 0.0 2.2e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 AJD67683.1 - 3.7e-06 27.2 0.0 7.1e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 AJD67683.1 - 9.3e-05 22.5 0.0 0.00018 21.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain MoaC PF01967.21 AJD67684.1 - 2.9e-49 166.7 0.3 3.3e-49 166.5 0.3 1.0 1 0 0 1 1 1 1 MoaC family Pneumo_matrix PF03393.16 AJD67684.1 - 0.11 11.7 0.0 0.24 10.6 0.0 1.5 2 0 0 2 2 2 0 Pneumovirus matrix protein ThiS PF02597.20 AJD67685.1 - 3.9e-17 62.6 0.0 4.4e-17 62.5 0.0 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.12 AJD67685.1 - 0.014 15.7 0.1 0.018 15.3 0.1 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I MoaE PF02391.17 AJD67686.1 - 7.7e-36 122.8 0.3 8.9e-36 122.6 0.3 1.0 1 0 0 1 1 1 1 MoaE protein DUF4170 PF13773.6 AJD67686.1 - 0.014 15.5 0.1 0.029 14.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) HATPase_c_3 PF13589.6 AJD67687.1 - 3.2e-23 82.1 0.0 4.3e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 AJD67687.1 - 7.1e-06 26.5 0.1 2.6e-05 24.7 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Pr_beta_C PF12465.8 AJD67687.1 - 0.65 9.4 2.9 1.2 8.6 0.1 2.7 3 0 0 3 3 3 0 Proteasome beta subunits C terminal HTH_Tnp_1 PF01527.20 AJD67688.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD67688.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD67688.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD67688.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD67688.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD67688.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD67688.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD67688.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD67688.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD67688.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD67688.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD67688.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD67688.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD67688.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD67688.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD67688.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD67688.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD67688.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD67688.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD67688.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD67688.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD67689.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD67689.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD67689.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain MobA_MobL PF03389.15 AJD67690.1 - 1e-44 152.9 0.0 1.3e-42 146.0 0.0 2.8 1 1 0 1 1 1 1 MobA/MobL family DUF4726 PF15855.5 AJD67691.1 - 0.051 13.8 0.2 0.076 13.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4726) Sbt_1 PF05982.12 AJD67692.1 - 0.00077 18.8 0.6 0.00077 18.8 0.6 2.0 2 0 0 2 2 2 1 Na+-dependent bicarbonate transporter superfamily DUF3995 PF13160.6 AJD67692.1 - 0.0052 17.1 1.4 0.0052 17.1 1.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3995) RELT PF12606.8 AJD67692.1 - 0.13 11.3 0.7 1.7 7.7 0.0 2.5 2 0 0 2 2 2 0 Tumour necrosis factor receptor superfamily member 19 MgtE PF01769.16 AJD67692.1 - 0.47 10.8 9.8 0.15 12.4 2.9 2.1 1 1 1 2 2 2 0 Divalent cation transporter DUF2070 PF09843.9 AJD67692.1 - 1.6 6.9 7.2 0.069 11.4 1.6 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) Phage_integrase PF00589.22 AJD67693.1 - 3.9e-08 33.3 0.0 7.4e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_3 PF14659.6 AJD67693.1 - 0.033 14.5 0.0 0.065 13.5 0.0 1.5 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DNA_pol3_delta2 PF13177.6 AJD67694.1 - 4.2e-45 153.5 0.0 5.8e-45 153.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_gamma3 PF12169.8 AJD67694.1 - 2.7e-25 88.9 0.4 2e-24 86.2 0.2 2.3 2 0 0 2 2 2 1 DNA polymerase III subunits gamma and tau domain III AAA PF00004.29 AJD67694.1 - 4.3e-12 46.6 0.0 8.9e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_tau_5 PF12170.8 AJD67694.1 - 4.6e-12 46.2 0.0 1.3e-11 44.7 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase III tau subunit V interacting with alpha RuvB_N PF05496.12 AJD67694.1 - 1.3e-07 31.5 0.0 7.3e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AJD67694.1 - 7.2e-06 26.5 1.3 3e-05 24.5 0.3 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 AJD67694.1 - 3.9e-05 23.7 0.1 0.00091 19.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AJD67694.1 - 8.4e-05 22.9 0.0 0.00093 19.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 AJD67694.1 - 9.8e-05 22.4 0.0 0.00027 21.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain ResIII PF04851.15 AJD67694.1 - 0.00027 21.0 0.0 0.49 10.4 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PIF1 PF05970.14 AJD67694.1 - 0.0014 17.9 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase AAA_18 PF13238.6 AJD67694.1 - 0.0015 19.1 0.0 0.0028 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 AJD67694.1 - 0.0025 17.4 0.1 0.37 10.3 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 AJD67694.1 - 0.0069 15.8 0.0 0.017 14.5 0.0 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 AJD67694.1 - 0.012 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 AJD67694.1 - 0.012 14.8 0.0 3.9 6.6 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_19 PF13245.6 AJD67694.1 - 0.026 14.9 0.1 0.54 10.6 0.1 2.5 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 AJD67694.1 - 0.036 14.1 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE QslA_E PF18226.1 AJD67694.1 - 0.075 13.0 0.8 0.36 10.8 0.1 2.3 2 0 0 2 2 2 0 LasR-specific antiactivator QslA chain E T2SSE PF00437.20 AJD67694.1 - 0.084 11.9 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_assoc_2 PF16193.5 AJD67694.1 - 0.1 13.0 0.3 3.4 8.1 0.0 2.8 1 1 1 2 2 2 0 AAA C-terminal domain SKI PF01202.22 AJD67694.1 - 0.11 12.6 0.1 0.25 11.5 0.1 1.6 1 0 0 1 1 1 0 Shikimate kinase Acetyltransf_6 PF13480.7 AJD67694.1 - 0.12 12.5 2.3 0.51 10.5 0.0 3.0 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain AAA_32 PF13654.6 AJD67694.1 - 0.16 10.7 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 AJD67694.1 - 0.17 11.3 0.0 0.81 9.1 0.0 2.0 1 1 0 1 1 1 0 Bacterial TniB protein YbaB_DNA_bd PF02575.16 AJD67695.1 - 5e-32 110.0 5.9 5.8e-32 109.8 5.9 1.0 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family EutQ PF06249.12 AJD67695.1 - 0.033 13.9 0.2 0.04 13.7 0.2 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DUF2931 PF11153.8 AJD67695.1 - 0.081 12.6 0.0 0.088 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2931) 14-3-3 PF00244.20 AJD67695.1 - 0.13 11.7 1.9 0.26 10.8 0.1 1.9 2 0 0 2 2 2 0 14-3-3 protein Toprim_4 PF13662.6 AJD67696.1 - 1.6e-22 79.8 0.0 3.1e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Toprim domain RecR PF02132.15 AJD67696.1 - 7.8e-14 51.0 0.6 1.4e-13 50.1 0.6 1.5 1 0 0 1 1 1 1 RecR protein Toprim PF01751.22 AJD67696.1 - 3.7e-08 33.5 0.0 6.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Toprim domain TniQ PF06527.11 AJD67696.1 - 0.05 14.3 0.6 0.67 10.7 0.0 2.3 2 1 0 2 2 2 0 TniQ HIT PF01230.23 AJD67697.1 - 1.1e-23 83.8 0.0 1.2e-23 83.7 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 AJD67697.1 - 1.2e-18 67.7 0.0 1.4e-18 67.4 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Slp PF03843.13 AJD67698.1 - 2.3e-43 147.2 0.0 2.8e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Outer membrane lipoprotein Slp family DUF3488 PF11992.8 AJD67699.1 - 1.9e-82 276.8 16.1 1.9e-82 276.8 16.1 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3488) Transglut_core PF01841.19 AJD67699.1 - 4e-26 91.7 0.7 7.5e-26 90.8 0.7 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 AJD67699.1 - 0.0041 17.4 3.8 0.0065 16.7 1.9 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF58 PF01882.18 AJD67700.1 - 4.5e-15 55.7 1.0 8e-15 54.9 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 AJD67701.1 - 1.9e-63 212.2 0.2 4.9e-63 210.8 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 AJD67701.1 - 1.9e-18 66.1 2.3 4.1e-18 65.0 2.3 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 AJD67701.1 - 4.8e-11 42.8 0.0 8.1e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 AJD67701.1 - 6.3e-05 22.8 0.0 0.00073 19.3 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 AJD67701.1 - 9.6e-05 22.8 0.0 0.00024 21.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 AJD67701.1 - 0.0056 15.8 0.0 0.0084 15.2 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 AJD67701.1 - 0.0072 16.0 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 AJD67701.1 - 0.014 14.8 0.6 0.48 9.8 0.2 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PMT_2 PF13231.6 AJD67702.1 - 3.9e-15 56.4 10.8 3.9e-15 56.4 10.8 2.2 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Big_7 PF17957.1 AJD67702.1 - 8.7e-06 26.4 0.0 2.3e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial Ig domain Glycos_transf_2 PF00535.26 AJD67703.1 - 0.0041 17.0 0.1 0.0059 16.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF5418 PF17439.2 AJD67703.1 - 0.11 12.6 0.5 0.16 12.1 0.5 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5418) GT87 PF09594.10 AJD67704.1 - 0.00087 19.1 45.3 0.00087 19.1 45.3 3.4 2 1 0 4 4 4 2 Glycosyltransferase family 87 Maf PF02545.14 AJD67705.1 - 4.4e-40 137.3 0.0 4.9e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein YceD PF02620.17 AJD67706.1 - 1.1e-10 41.7 0.1 1.5e-10 41.2 0.1 1.2 1 0 0 1 1 1 1 Large ribosomal RNA subunit accumulation protein YceD Ribosomal_L32p PF01783.23 AJD67707.1 - 1e-20 73.7 0.3 1.2e-20 73.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family ACP_syn_III_C PF08541.10 AJD67708.1 - 2.1e-39 133.6 0.4 8.7e-38 128.4 0.0 3.2 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 AJD67708.1 - 1.6e-35 120.8 1.5 1.6e-35 120.8 1.5 2.4 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 AJD67708.1 - 6.4e-08 32.3 0.4 3.8e-07 29.7 0.1 2.0 2 1 1 3 3 3 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 AJD67708.1 - 0.00094 18.8 5.8 0.014 15.0 1.2 3.5 1 1 2 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Chal_sti_synt_N PF00195.19 AJD67708.1 - 0.0015 18.0 1.3 0.0029 17.1 1.3 1.4 1 1 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain DUF498 PF04430.14 AJD67708.1 - 0.0047 17.0 0.0 0.018 15.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF498/DUF598) SpoVAD PF07451.11 AJD67708.1 - 0.019 13.7 0.2 0.035 12.8 0.2 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) MEKHLA PF08670.11 AJD67709.1 - 1.6e-44 151.2 0.0 2e-44 150.9 0.0 1.0 1 0 0 1 1 1 1 MEKHLA domain PAS_8 PF13188.7 AJD67709.1 - 1.5e-06 28.1 0.0 3.6e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 PAS domain PAS_4 PF08448.10 AJD67709.1 - 0.00012 22.3 0.1 0.00017 21.8 0.1 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 AJD67709.1 - 0.00024 21.1 0.0 0.00036 20.5 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 AJD67709.1 - 0.016 15.4 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 PAS domain PAS_3 PF08447.12 AJD67709.1 - 0.028 14.7 0.0 0.04 14.2 0.0 1.3 1 0 0 1 1 1 0 PAS fold Acyl_transf_1 PF00698.21 AJD67710.1 - 2e-36 126.1 2.8 2.4e-36 125.9 2.8 1.0 1 0 0 1 1 1 1 Acyl transferase domain adh_short_C2 PF13561.6 AJD67711.1 - 3e-64 216.8 9.7 3.5e-64 216.6 9.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67711.1 - 2.7e-57 193.4 6.4 3.1e-57 193.2 6.4 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD67711.1 - 2.3e-17 63.5 3.2 3.6e-17 62.9 3.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD67711.1 - 2.9e-05 23.6 1.5 0.0002 20.9 1.5 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family CobU PF02283.16 AJD67711.1 - 0.022 14.4 0.1 0.031 13.9 0.1 1.2 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PP-binding PF00550.25 AJD67712.1 - 3.5e-16 59.3 0.3 3.9e-16 59.2 0.3 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 AJD67712.1 - 7.7e-06 26.1 0.9 8.7e-06 25.9 0.9 1.2 1 1 0 1 1 1 1 Acyl-carrier DUF1493 PF07377.12 AJD67712.1 - 0.025 15.0 0.3 0.027 14.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) Ribosomal_L50 PF10501.9 AJD67712.1 - 0.028 14.6 0.1 0.034 14.3 0.1 1.4 1 1 0 1 1 1 0 Ribosomal subunit 39S ketoacyl-synt PF00109.26 AJD67713.1 - 1.8e-58 198.1 0.6 1.8e-58 198.1 0.6 1.8 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 AJD67713.1 - 2.8e-38 130.6 0.9 2.8e-38 130.6 0.9 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 AJD67713.1 - 0.00012 21.5 0.3 0.00024 20.6 0.3 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 AJD67713.1 - 0.00026 20.8 0.4 0.25 11.2 0.0 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KAsynt_C_assoc PF16197.5 AJD67713.1 - 0.18 12.3 0.0 3.7 8.1 0.1 2.2 2 0 0 2 2 2 0 Ketoacyl-synthetase C-terminal extension Chorismate_bind PF00425.18 AJD67714.1 - 2e-91 306.1 0.0 2.4e-91 305.9 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 AJD67714.1 - 0.00035 20.8 0.0 0.00057 20.1 0.0 1.3 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region PsaX PF08078.12 AJD67714.1 - 0.013 15.4 0.6 0.044 13.8 0.0 2.1 2 0 0 2 2 2 0 PsaX family YceG PF02618.16 AJD67715.1 - 7.4e-77 258.6 0.0 8.8e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 YceG-like family DNA_pol3_delta2 PF13177.6 AJD67716.1 - 7e-33 113.7 0.0 9.6e-33 113.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 AJD67716.1 - 7.4e-06 26.4 0.0 1.4e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD67716.1 - 0.0059 16.6 0.1 0.28 11.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AJD67716.1 - 0.011 16.0 0.0 0.036 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 AJD67716.1 - 0.059 12.6 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_32 PF13654.6 AJD67716.1 - 0.13 11.0 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD67716.1 - 0.73 10.2 7.1 5.7 7.3 7.1 2.4 1 1 0 1 1 1 0 AAA ATPase domain PilZ PF07238.14 AJD67717.1 - 7.8e-10 39.0 0.0 9.1e-10 38.8 0.0 1.0 1 0 0 1 1 1 1 PilZ domain Bacillus_PapR PF05968.11 AJD67718.1 - 0.02 14.7 0.5 0.035 14.0 0.5 1.4 1 0 0 1 1 1 0 Bacillus PapR protein LPAM_1 PF08139.12 AJD67718.1 - 0.55 10.8 4.4 0.95 10.1 4.4 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Sigma54_activat PF00158.26 AJD67719.1 - 4.6e-60 202.1 0.1 6.3e-60 201.7 0.1 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain PrpR_N PF06506.11 AJD67719.1 - 9.3e-44 148.9 0.0 2e-43 147.9 0.0 1.5 1 0 0 1 1 1 1 Propionate catabolism activator Sigma54_activ_2 PF14532.6 AJD67719.1 - 1.1e-18 67.7 0.0 2.6e-18 66.5 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 AJD67719.1 - 4.1e-08 32.9 1.1 1.4e-07 31.2 1.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AJD67719.1 - 3.1e-05 24.0 0.0 7.5e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 AJD67719.1 - 0.00016 21.1 0.5 0.02 14.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 AJD67719.1 - 0.0025 18.3 0.0 0.005 17.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_23 PF13384.6 AJD67719.1 - 0.0037 17.0 0.1 0.013 15.2 0.1 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_30 PF13556.6 AJD67719.1 - 0.092 12.6 2.0 0.21 11.4 0.1 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain YdaS_antitoxin PF15943.5 AJD67719.1 - 0.093 12.6 0.6 0.19 11.6 0.6 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_1_2 PF13022.6 AJD67719.1 - 0.13 12.4 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase AAA_16 PF13191.6 AJD67719.1 - 0.16 12.3 5.0 0.11 12.9 2.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain ATPase PF06745.13 AJD67719.1 - 0.19 11.1 0.0 0.34 10.2 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_7 PF12775.7 AJD67719.1 - 0.2 11.2 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region PEP_mutase PF13714.6 AJD67720.1 - 7.5e-48 163.1 4.6 8.7e-48 162.9 4.6 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 AJD67720.1 - 2.5e-10 39.5 0.9 5.3e-10 38.4 0.7 1.5 1 1 1 2 2 2 1 Isocitrate lyase family MTHFR PF02219.17 AJD67720.1 - 0.017 14.4 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase SUI1 PF01253.22 AJD67720.1 - 0.16 12.5 0.0 0.3 11.7 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor SUI1 Citrate_synt PF00285.21 AJD67721.1 - 5.8e-112 374.3 0.0 6.8e-112 374.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Aconitase PF00330.20 AJD67722.1 - 1.6e-145 485.7 0.0 2e-145 485.3 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 AJD67722.1 - 5.1e-29 101.3 0.0 8.6e-29 100.5 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain ParD_antitoxin PF03693.14 AJD67723.1 - 0.00017 21.9 0.1 0.00021 21.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HicB_lk_antitox PF15919.5 AJD67723.1 - 0.068 13.3 0.0 0.09 12.9 0.0 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ParE_toxin PF05016.15 AJD67724.1 - 2.6e-05 24.7 0.0 2.9e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PrpF PF04303.13 AJD67725.1 - 1.8e-173 576.8 1.2 2e-173 576.6 1.2 1.0 1 0 0 1 1 1 1 PrpF protein TonB_dep_Rec PF00593.24 AJD67726.1 - 8.6e-38 131.4 25.8 8.6e-38 131.4 25.8 1.9 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD67726.1 - 2e-10 41.2 0.3 6.7e-10 39.5 0.1 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain IU_nuc_hydro PF01156.19 AJD67727.1 - 1.8e-45 155.9 0.0 2.1e-45 155.6 0.0 1.1 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase bMG5 PF17972.1 AJD67728.1 - 2e-35 121.9 0.0 6.4e-34 117.0 0.0 3.3 3 0 0 3 3 3 1 Bacterial Alpha-2-macroglobulin MG5 domain bMG10 PF17973.1 AJD67728.1 - 1.1e-30 106.4 0.0 4e-30 104.7 0.0 2.0 1 0 0 1 1 1 1 Bacterial Alpha-2-macroglobulin MG10 domain bMG6 PF17962.1 AJD67728.1 - 2.2e-29 101.9 0.1 1.3e-28 99.4 0.0 2.5 3 0 0 3 3 3 1 Bacterial macroglobulin domain 6 bMG3 PF11974.8 AJD67728.1 - 4.9e-23 81.1 0.0 1.8e-22 79.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain MG2 PF01835.19 AJD67728.1 - 5.3e-21 74.9 0.1 3.4e-19 69.1 0.0 3.5 2 0 0 2 2 2 1 MG2 domain A2M_BRD PF07703.14 AJD67728.1 - 1.6e-15 57.7 0.1 6.9e-15 55.6 0.1 2.2 1 0 0 1 1 1 1 Alpha-2-macroglobulin bait region domain A2M PF00207.22 AJD67728.1 - 2.3e-09 37.0 0.1 3.6e-07 29.9 0.0 3.4 4 0 0 4 4 4 1 Alpha-2-macroglobulin family bMG1 PF17970.1 AJD67728.1 - 8.7e-09 35.4 0.0 2.1e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial Alpha-2-macroglobulin MG1 domain DUF11 PF01345.18 AJD67728.1 - 0.0008 19.7 0.5 8.2 6.8 0.0 4.2 3 0 0 3 3 3 1 Domain of unknown function DUF11 MG4 PF17789.1 AJD67728.1 - 0.0063 16.6 0.0 1.4 9.1 0.0 3.9 4 0 0 4 4 4 1 Macroglobulin domain MG4 Big_1 PF02369.16 AJD67728.1 - 0.021 14.8 0.0 5.1 7.2 0.0 4.1 5 0 0 5 5 5 0 Bacterial Ig-like domain (group 1) FixG_C PF11614.8 AJD67728.1 - 0.059 13.6 0.0 0.48 10.7 0.0 2.6 3 0 0 3 3 3 0 IG-like fold at C-terminal of FixG, putative oxidoreductase TED_complement PF07678.14 AJD67728.1 - 0.089 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 A-macroglobulin TED domain Invasin_D3 PF09134.10 AJD67728.1 - 0.098 13.0 0.0 17 5.8 0.0 3.7 3 0 0 3 3 3 0 Invasin, domain 3 TonB_dep_Rec PF00593.24 AJD67729.1 - 7.4e-34 118.4 42.4 7.4e-34 118.4 42.4 2.3 1 1 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD67729.1 - 8.4e-15 55.3 0.2 3.1e-14 53.4 0.2 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD67729.1 - 1.9e-14 53.5 1.7 1.9e-14 53.5 1.7 3.9 4 1 0 4 4 4 1 Outer membrane protein beta-barrel family GDPD PF03009.17 AJD67730.1 - 3.9e-20 72.7 0.2 6.6e-20 71.9 0.2 1.3 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family DUF4996 PF16387.5 AJD67730.1 - 2.5e-15 56.8 0.0 6.3e-15 55.5 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function Transgly PF00912.22 AJD67731.1 - 4.5e-46 156.5 0.0 7.5e-46 155.8 0.0 1.4 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 AJD67731.1 - 4.4e-15 55.7 0.0 1.3e-14 54.2 0.0 1.6 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain BiPBP_C PF06832.12 AJD67731.1 - 3.2e-14 52.7 2.3 1.3e-13 50.8 0.3 2.7 3 0 0 3 3 3 1 Penicillin-Binding Protein C-terminus Family Ferritin PF00210.24 AJD67732.1 - 1.8e-28 99.3 3.9 2.3e-28 98.9 3.9 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 AJD67732.1 - 6.4e-10 39.6 3.9 6.4e-10 39.6 3.9 1.6 2 0 0 2 2 2 1 Rubrerythrin Ferritin_2 PF13668.6 AJD67732.1 - 5.2e-07 29.9 1.5 1.7e-06 28.3 1.5 1.8 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 AJD67732.1 - 0.0002 21.7 3.7 0.0042 17.4 0.2 2.5 2 1 1 3 3 3 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 AJD67732.1 - 0.00027 20.8 0.6 0.084 12.7 0.0 2.2 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 DUF892 PF05974.12 AJD67732.1 - 0.0057 16.7 1.8 0.0057 16.7 1.8 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF892) EF-hand_like PF09279.11 AJD67732.1 - 0.041 14.4 0.2 0.21 12.1 0.0 2.0 2 0 0 2 2 2 0 Phosphoinositide-specific phospholipase C, efhand-like LAGLIDADG_WhiA PF14527.6 AJD67732.1 - 0.058 13.5 0.2 0.26 11.4 0.1 2.1 1 1 1 2 2 2 0 WhiA LAGLIDADG-like domain DUF455 PF04305.14 AJD67732.1 - 0.065 12.8 2.0 0.15 11.6 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF455) DUF2335 PF10097.9 AJD67732.1 - 1.2 9.1 4.2 0.67 10.0 1.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2335) Redoxin PF08534.10 AJD67733.1 - 1.3e-32 112.5 0.0 1.5e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AJD67733.1 - 6.6e-13 48.7 0.0 7.7e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family HSP20 PF00011.21 AJD67734.1 - 5.6e-24 84.2 0.0 7.7e-24 83.8 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 AJD67734.1 - 9.1e-10 38.0 0.0 1.4e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DnaJ_C PF01556.18 AJD67735.1 - 1.6e-25 89.9 0.0 2.1e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 AJD67735.1 - 2.6e-25 88.3 2.9 7.7e-24 83.6 1.2 2.2 2 0 0 2 2 2 1 DnaJ domain FeoA PF04023.14 AJD67735.1 - 0.16 12.3 0.0 7.3 6.9 0.0 2.6 2 0 0 2 2 2 0 FeoA domain SRR PF07709.11 AJD67735.1 - 3.9 8.3 4.2 4.8 8.0 0.0 3.3 5 0 0 5 5 5 0 Seven Residue Repeat Response_reg PF00072.24 AJD67737.1 - 3.1e-27 94.9 0.1 3.6e-27 94.8 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 AJD67737.1 - 0.00012 22.4 0.0 0.00015 22.1 0.0 1.2 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ Band_7 PF01145.25 AJD67739.1 - 3.2e-31 108.7 1.8 5.2e-31 108.0 1.8 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7 PF01145.25 AJD67740.1 - 6e-24 85.0 2.0 9.4e-24 84.4 2.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 AJD67740.1 - 0.0044 16.8 0.1 0.82 9.3 0.1 2.2 2 0 0 2 2 2 2 SPFH domain-Band 7 family DivIVA PF05103.13 AJD67740.1 - 0.3 11.2 4.1 0.72 10.0 4.2 1.6 1 1 0 1 1 1 0 DivIVA protein Y1_Tnp PF01797.16 AJD67741.1 - 2.1e-12 47.2 0.0 2.5e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like Adenylsucc_synt PF00709.21 AJD67742.1 - 3.7e-176 586.2 0.0 4.2e-176 586.0 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase DUF348 PF03990.14 AJD67742.1 - 0.31 10.8 1.3 36 4.2 0.0 3.4 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain Peptidase_M1 PF01433.20 AJD67743.1 - 7.8e-70 234.8 1.9 1.2e-69 234.2 1.9 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 AJD67743.1 - 3.5e-46 157.7 0.0 5.5e-46 157.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 AJD67743.1 - 3.3e-42 145.1 3.1 6.4e-42 144.2 3.1 1.5 1 0 0 1 1 1 1 ERAP1-like C-terminal domain DUF2808 PF10989.8 AJD67743.1 - 0.01 15.8 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) adh_short_C2 PF13561.6 AJD67745.1 - 6.8e-49 166.5 0.1 9e-49 166.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67745.1 - 2.5e-40 138.1 0.0 3e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 AJD67745.1 - 0.00061 19.3 0.0 0.0016 17.9 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD67745.1 - 0.019 14.9 0.1 0.021 14.7 0.1 1.2 1 0 0 1 1 1 0 NAD(P)H-binding Eno-Rase_NADH_b PF12242.8 AJD67745.1 - 0.087 12.6 0.8 0.58 10.0 0.3 2.5 3 0 0 3 3 3 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TetR_N PF00440.23 AJD67746.1 - 4.4e-12 45.6 0.3 1.1e-11 44.3 0.3 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family SAP130_C PF16014.5 AJD67750.1 - 0.0071 15.5 1.7 0.0072 15.5 1.7 1.1 1 0 0 1 1 1 1 Histone deacetylase complex subunit SAP130 C-terminus Tex_N PF09371.10 AJD67750.1 - 0.096 12.4 0.5 0.34 10.6 0.5 1.8 1 1 0 1 1 1 0 Tex-like protein N-terminal domain HTH_AsnC-type PF13404.6 AJD67751.1 - 0.0011 18.8 0.1 0.0024 17.6 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 AJD67751.1 - 0.0015 18.3 0.1 0.003 17.4 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 AJD67751.1 - 0.003 17.0 0.0 0.0057 16.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 AJD67751.1 - 0.005 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AJD67751.1 - 0.015 15.1 0.1 0.057 13.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_IclR PF09339.10 AJD67751.1 - 0.021 14.6 0.1 0.067 13.0 0.1 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.6 AJD67751.1 - 0.072 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.6 AJD67751.1 - 0.084 12.9 1.0 1.2 9.2 0.1 2.7 2 1 1 3 3 3 0 Winged helix-turn helix HTH_11 PF08279.12 AJD67751.1 - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain Pkinase PF00069.25 AJD67755.1 - 1.4e-11 44.2 0.0 4e-11 42.8 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 AJD67755.1 - 2.7e-05 23.6 0.0 4.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 AJD67755.1 - 0.00072 18.4 0.0 0.001 17.9 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase TetR_N PF00440.23 AJD67757.1 - 7.2e-10 38.5 0.0 1.2e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 AJD67757.1 - 3.4e-06 27.2 1.4 3.4e-06 27.2 1.4 2.3 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 AJD67757.1 - 0.0077 16.4 0.7 0.0077 16.4 0.7 1.8 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal zf-C2H2_3 PF13878.6 AJD67758.1 - 0.055 13.3 0.0 0.075 12.9 0.0 1.2 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO His_Phos_1 PF00300.22 AJD67759.1 - 2.4e-34 118.7 0.2 5.8e-34 117.5 0.2 1.5 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Carb_kinase PF01256.17 AJD67760.1 - 9.1e-41 139.9 6.2 1e-40 139.7 6.2 1.0 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 AJD67760.1 - 0.00017 21.1 0.0 0.0026 17.2 0.0 2.1 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase HK PF02110.15 AJD67760.1 - 0.00021 20.8 0.0 0.00021 20.8 0.0 2.0 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Glyco_hydro_30 PF02055.16 AJD67761.1 - 1.8e-71 241.0 1.0 2.3e-71 240.6 1.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 TIM-barrel domain Glyco_hydro_30C PF17189.4 AJD67761.1 - 7.8e-14 51.6 2.3 1.4e-13 50.8 0.5 2.3 2 0 0 2 2 2 1 Glycosyl hydrolase family 30 beta sandwich domain Glyco_hydro_15 PF00723.21 AJD67762.1 - 6.4e-29 101.0 0.4 1e-26 93.8 0.2 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_4 PF07721.14 AJD67762.1 - 0.071 13.8 0.7 0.071 13.8 0.7 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 AJD67762.1 - 0.56 11.0 2.2 0.9 10.3 0.1 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat adh_short_C2 PF13561.6 AJD67763.1 - 2.5e-60 203.9 0.0 3e-60 203.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67763.1 - 7.8e-50 169.1 0.0 1e-49 168.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD67763.1 - 5.4e-09 36.2 0.0 7.4e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD67763.1 - 0.059 12.8 0.1 0.097 12.1 0.1 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Hydantoinase_B PF02538.14 AJD67763.1 - 0.078 11.4 0.0 0.1 11.0 0.0 1.2 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase Eno-Rase_NADH_b PF12242.8 AJD67763.1 - 0.11 12.2 0.1 0.24 11.2 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Glyco_hydro_92 PF07971.12 AJD67764.1 - 4.5e-171 569.8 0.0 5.5e-171 569.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 Glyco_hydro_92N PF17678.1 AJD67764.1 - 3.7e-74 249.6 0.1 6.1e-74 248.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 N-terminal domain N36 PF11438.8 AJD67765.1 - 0.013 15.3 1.2 0.013 15.3 1.2 2.3 2 1 0 2 2 2 0 36-mer N-terminal peptide of the N protein (N36) adh_short PF00106.25 AJD67766.1 - 4.2e-26 91.6 0.0 5.9e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD67766.1 - 2.2e-16 60.1 0.0 3e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase 2OG-FeII_Oxy_2 PF13532.6 AJD67767.1 - 2.4e-17 63.8 0.0 3.6e-15 56.7 0.0 2.1 1 1 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily YukD PF08817.10 AJD67767.1 - 0.013 16.2 0.3 0.026 15.2 0.3 1.7 1 1 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukD 2OG-FeII_Oxy PF03171.20 AJD67767.1 - 0.096 13.2 0.0 0.2 12.1 0.0 1.7 1 1 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily Pyr_redox_2 PF07992.14 AJD67768.1 - 1.2e-31 110.1 1.3 1.6e-31 109.7 1.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD67768.1 - 8.9e-13 48.2 0.0 1.3e-05 24.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase cNMP_binding PF00027.29 AJD67768.1 - 1.4e-09 37.8 0.0 3.3e-09 36.7 0.0 1.7 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain FAD_binding_3 PF01494.19 AJD67768.1 - 9e-08 31.7 2.5 0.00014 21.3 0.8 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 AJD67768.1 - 1.1e-07 32.3 2.1 1.1e-05 25.9 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD67768.1 - 5.6e-07 29.7 1.3 5.6e-07 29.7 1.3 2.4 3 0 0 3 3 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 AJD67768.1 - 7.8e-07 28.5 0.0 0.056 12.6 0.0 3.1 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 AJD67768.1 - 2.8e-06 27.2 8.6 8.1e-06 25.6 8.6 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AJD67768.1 - 6.4e-06 25.1 1.1 5.1e-05 22.1 1.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 AJD67768.1 - 1.6e-05 24.3 0.3 4.4e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 AJD67768.1 - 6.8e-05 22.4 5.2 0.00015 21.3 5.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD67768.1 - 0.00025 20.2 5.5 0.00025 20.2 5.5 3.1 2 1 0 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 AJD67768.1 - 0.00071 18.7 1.7 0.036 13.1 1.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 AJD67768.1 - 0.0059 16.6 1.5 0.35 10.8 0.3 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.22 AJD67768.1 - 0.015 14.4 1.4 0.068 12.2 2.2 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A MliC PF09864.9 AJD67768.1 - 0.017 15.0 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 Membrane-bound lysozyme-inhibitor of c-type lysozyme 3HCDH_N PF02737.18 AJD67768.1 - 0.23 11.3 1.7 0.28 11.0 0.7 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain zf-UBP PF02148.19 AJD67769.1 - 1.6e-10 41.1 5.6 2.6e-10 40.5 5.6 1.3 1 0 0 1 1 1 1 Zn-finger in ubiquitin-hydrolases and other protein EAL PF00563.20 AJD67770.1 - 5.8e-49 166.8 0.0 7.4e-49 166.4 0.0 1.1 1 0 0 1 1 1 1 EAL domain HD_4 PF13328.6 AJD67771.1 - 7.9e-30 103.7 0.1 1.1e-29 103.2 0.1 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.22 AJD67771.1 - 0.0045 17.2 0.1 0.0072 16.6 0.1 1.3 1 0 0 1 1 1 1 HD domain ABC_tran PF00005.27 AJD67772.1 - 3.5e-15 56.7 0.1 1.6e-06 28.7 0.0 4.2 3 1 0 3 3 3 2 ABC transporter UvrA_DNA-bind PF17755.1 AJD67772.1 - 1e-12 48.4 0.0 5.5e-12 46.0 0.0 2.0 2 0 0 2 2 2 1 UvrA DNA-binding domain DnaJ_CXXCXGXG PF00684.19 AJD67772.1 - 2.9e-07 30.7 1.2 0.0085 16.4 0.1 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_16 PF13191.6 AJD67772.1 - 3.6e-07 30.7 7.6 0.003 18.0 0.8 4.0 3 2 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 AJD67772.1 - 6.3e-07 29.0 0.1 0.05 13.3 0.1 2.9 3 0 0 3 3 3 2 P-loop containing region of AAA domain AAA_21 PF13304.6 AJD67772.1 - 6.7e-07 29.4 7.1 0.0021 18.0 0.0 4.0 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD67772.1 - 2.3e-05 24.0 0.0 3.5 7.0 0.0 4.0 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 AJD67772.1 - 0.00013 21.6 0.1 0.61 9.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.6 AJD67772.1 - 0.0002 21.2 0.0 0.24 11.1 0.0 3.7 4 0 0 4 4 4 1 AAA ATPase domain AAA_33 PF13671.6 AJD67772.1 - 0.00055 20.1 0.1 1.8 8.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 AJD67772.1 - 0.00073 19.5 0.1 0.94 9.4 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Anti-TRAP PF15777.5 AJD67772.1 - 0.0037 17.2 4.7 1.7 8.7 0.6 3.4 3 0 0 3 3 3 1 Tryptophan RNA-binding attenuator protein inhibitory protein APS_kinase PF01583.20 AJD67772.1 - 0.0069 16.3 0.3 1.9 8.4 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase DUF2075 PF09848.9 AJD67772.1 - 0.011 14.9 0.0 1.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 AJD67772.1 - 0.014 15.3 0.4 9.8 6.1 0.1 2.9 3 0 0 3 3 3 0 NACHT domain AAA_22 PF13401.6 AJD67772.1 - 0.021 15.1 0.4 5 7.4 0.0 3.3 4 0 0 4 4 3 0 AAA domain AAA_18 PF13238.6 AJD67772.1 - 0.041 14.4 1.1 8.8 6.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 AJD67772.1 - 0.061 13.1 0.1 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MeaB PF03308.16 AJD67772.1 - 0.091 11.7 0.9 6.1 5.7 0.1 3.1 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF4350 PF14258.6 AJD67772.1 - 0.17 12.4 1.3 0.99 9.9 0.2 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4350) ATPase PF06745.13 AJD67772.1 - 0.2 11.0 0.0 11 5.3 0.0 2.3 2 0 0 2 2 2 0 KaiC Zn-ribbon_8 PF09723.10 AJD67772.1 - 0.24 11.6 6.6 9.6 6.4 0.1 3.4 3 0 0 3 3 3 0 Zinc ribbon domain cobW PF02492.19 AJD67772.1 - 0.29 10.7 0.4 8.8 5.9 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ald_Xan_dh_C2 PF02738.18 AJD67773.1 - 1.4e-108 363.7 0.1 1.9e-108 363.3 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 AJD67773.1 - 1.7e-23 83.1 0.3 3.5e-22 78.8 0.0 2.9 2 1 1 3 3 3 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.21 AJD67774.1 - 4.7e-45 153.4 0.0 9.2e-45 152.4 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 AJD67774.1 - 3e-18 65.9 0.3 4.9e-18 65.2 0.3 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 AJD67775.1 - 1.5e-30 105.1 0.4 1.5e-30 105.1 0.4 2.0 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 AJD67775.1 - 6.2e-06 26.1 0.1 6.2e-06 26.1 0.1 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 AJD67775.1 - 0.00024 21.1 0.0 0.00044 20.2 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 AJD67775.1 - 0.045 13.8 1.2 0.38 10.8 0.5 2.5 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF763 PF05559.11 AJD67776.1 - 1.1e-124 415.7 0.0 1.3e-124 415.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HRDC PF00570.23 AJD67776.1 - 0.08 12.9 0.0 0.24 11.4 0.0 1.8 1 0 0 1 1 1 0 HRDC domain MUG113 PF13455.6 AJD67777.1 - 0.0011 19.6 0.0 0.0017 19.0 0.0 1.4 1 0 0 1 1 1 1 Meiotically up-regulated gene 113 T5orf172 PF10544.9 AJD67777.1 - 0.048 14.2 0.0 0.11 13.0 0.0 1.6 1 1 1 2 2 2 0 T5orf172 domain Cupin_2 PF07883.11 AJD67778.1 - 5.1e-19 67.7 0.5 6.4e-19 67.4 0.5 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AJD67778.1 - 1.3e-07 31.6 0.1 1.6e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 AJD67778.1 - 8.1e-05 22.6 0.0 0.0001 22.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 AJD67778.1 - 0.0006 19.4 0.0 0.00083 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 AJD67778.1 - 0.002 17.8 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.12 AJD67778.1 - 0.0029 17.8 0.0 0.0043 17.2 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_6 PF12852.7 AJD67778.1 - 0.034 13.9 0.1 0.036 13.8 0.1 1.2 1 0 0 1 1 1 0 Cupin Pirin_C PF05726.13 AJD67778.1 - 0.11 12.9 0.1 0.24 11.8 0.0 1.5 1 1 1 2 2 2 0 Pirin C-terminal cupin domain CENP-C_C PF11699.8 AJD67778.1 - 0.17 12.1 0.0 0.21 11.8 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like Fic PF02661.18 AJD67780.1 - 7.8e-13 49.1 0.0 1.2e-12 48.5 0.0 1.3 1 0 0 1 1 1 1 Fic/DOC family MazE_antitoxin PF04014.18 AJD67781.1 - 4.6e-06 26.4 0.0 6.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2080 PF09853.9 AJD67781.1 - 0.0033 17.1 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) Peptidase_S24 PF00717.23 AJD67782.1 - 1.6e-15 56.8 0.1 2.5e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like LexA_DNA_bind PF01726.16 AJD67782.1 - 5.1e-12 45.4 0.1 7.4e-12 44.9 0.1 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.7 AJD67782.1 - 2.4e-05 24.3 0.0 5.8e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AJD67782.1 - 2.6e-05 24.0 0.1 4.8e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 AJD67782.1 - 0.013 15.4 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RP-C PF03428.13 AJD67782.1 - 0.042 13.5 0.1 0.086 12.5 0.0 1.5 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_11 PF08279.12 AJD67782.1 - 0.064 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 AJD67782.1 - 0.13 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator SulA PF03846.14 AJD67783.1 - 0.0072 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Cell division inhibitor SulA RecA PF00154.21 AJD67783.1 - 0.26 10.7 0.0 0.44 10.0 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein IMS PF00817.20 AJD67784.1 - 8.8e-07 29.0 0.0 1.3e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 impB/mucB/samB family DUF2939 PF11159.8 AJD67784.1 - 0.015 15.7 0.2 0.051 14.0 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2939) DNA_pol3_alpha PF07733.12 AJD67785.1 - 4.8e-79 265.6 0.0 3.6e-78 262.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 AJD67785.1 - 1.1e-58 197.2 0.0 1.8e-58 196.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain HHH_6 PF14579.6 AJD67785.1 - 8e-21 74.1 0.1 2e-20 72.8 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif PHP PF02811.19 AJD67785.1 - 5.6e-15 56.0 0.0 1.6e-14 54.6 0.0 1.8 1 0 0 1 1 1 1 PHP domain tRNA_anti-codon PF01336.25 AJD67785.1 - 1e-05 25.4 0.0 2.4e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HHH_3 PF12836.7 AJD67785.1 - 0.0017 18.6 0.0 0.0065 16.7 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif Acetyltransf_CG PF14542.6 AJD67785.1 - 0.011 15.9 0.0 0.028 14.5 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase T2SSK PF03934.13 AJD67785.1 - 0.034 13.5 4.0 8 5.8 0.1 3.8 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein K tRNA_anti_2 PF13742.6 AJD67785.1 - 0.037 14.2 0.0 0.087 13.0 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Peptidase_S9 PF00326.21 AJD67786.1 - 1.8e-46 158.3 0.9 3.6e-46 157.3 0.9 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 AJD67786.1 - 1.6e-11 44.2 0.1 2.9e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 AJD67786.1 - 2.9e-09 36.9 0.7 7.2e-08 32.3 1.4 2.1 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 AJD67786.1 - 8.1e-07 28.5 2.5 0.00081 18.7 1.7 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD67786.1 - 0.00014 21.6 0.5 0.54 9.9 0.4 2.8 3 0 0 3 3 3 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 AJD67786.1 - 0.00015 21.7 0.3 0.00051 20.0 0.3 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD67786.1 - 0.00037 21.2 5.9 0.00037 21.2 5.9 2.9 3 1 0 3 3 3 1 Alpha/beta hydrolase family Esterase PF00756.20 AJD67786.1 - 0.0023 17.6 0.3 0.0049 16.5 0.1 1.7 2 1 0 2 2 2 1 Putative esterase Abhydrolase_2 PF02230.16 AJD67786.1 - 0.0039 17.0 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase BAAT_C PF08840.11 AJD67786.1 - 0.043 13.7 0.1 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Cytochrom_D1 PF02239.16 AJD67786.1 - 0.073 11.6 0.0 0.45 9.0 0.0 2.3 3 0 0 3 3 3 0 Cytochrome D1 heme domain Abhydrolase_4 PF08386.10 AJD67786.1 - 0.083 13.0 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 TAP-like protein LIP PF03583.14 AJD67786.1 - 0.35 10.1 1.5 9.2 5.5 2.4 2.2 2 0 0 2 2 2 0 Secretory lipase HDOD PF08668.12 AJD67787.1 - 4.2e-52 176.5 0.0 5.1e-52 176.2 0.0 1.1 1 0 0 1 1 1 1 HDOD domain HD PF01966.22 AJD67787.1 - 4e-08 33.5 0.0 9.8e-08 32.3 0.0 1.7 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 AJD67787.1 - 0.13 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme OPT PF03169.15 AJD67788.1 - 8.7e-129 430.9 46.7 1.1e-128 430.6 46.7 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein Phenol_MetA_deg PF13557.6 AJD67789.1 - 5.6e-24 85.4 1.5 6.8e-24 85.2 1.5 1.1 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation Porin_4 PF13609.6 AJD67789.1 - 0.0086 15.9 0.0 0.86 9.3 0.0 2.3 2 1 0 2 2 2 2 Gram-negative porin Peptidase_S9 PF00326.21 AJD67791.1 - 7.1e-60 202.1 2.8 7.1e-60 202.1 2.8 1.6 2 0 0 2 2 2 1 Prolyl oligopeptidase family PD40 PF07676.12 AJD67791.1 - 2.5e-14 52.8 14.3 6.3e-05 22.8 0.0 7.1 7 0 0 7 7 7 4 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 AJD67791.1 - 7.2e-05 22.5 7.5 0.09 12.3 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 AJD67791.1 - 0.00037 19.8 0.8 0.68 9.1 0.5 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DPPIV_N PF00930.21 AJD67791.1 - 0.00054 18.8 0.0 0.0035 16.2 0.0 2.2 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_1 PF00561.20 AJD67791.1 - 0.0012 18.5 5.4 0.16 11.6 0.0 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold SGL PF08450.12 AJD67791.1 - 0.0038 16.8 0.0 3 7.4 0.0 2.9 2 1 1 3 3 3 2 SMP-30/Gluconolactonase/LRE-like region Esterase PF00756.20 AJD67791.1 - 0.015 15.0 0.3 0.063 12.9 0.3 1.9 1 1 0 1 1 1 0 Putative esterase DLH PF01738.18 AJD67791.1 - 0.036 13.6 0.3 0.12 12.0 0.3 1.8 1 1 0 1 1 1 0 Dienelactone hydrolase family DUF2920 PF11144.8 AJD67791.1 - 0.04 13.1 0.0 0.76 8.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) AXE1 PF05448.12 AJD67791.1 - 0.076 11.7 0.7 0.13 10.9 0.7 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) PAS_4 PF08448.10 AJD67794.1 - 1.8e-23 82.9 0.1 2.7e-22 79.1 0.0 2.4 2 1 1 3 3 3 1 PAS fold HTH_18 PF12833.7 AJD67794.1 - 5.1e-23 81.1 0.4 9.3e-23 80.3 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD67794.1 - 2e-18 66.0 0.1 7.7e-12 45.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family PAS_8 PF13188.7 AJD67794.1 - 7e-08 32.3 0.0 2e-07 30.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 AJD67794.1 - 2.8e-07 30.8 0.0 1.1e-06 28.8 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 AJD67794.1 - 6.4e-05 22.9 0.0 0.00024 21.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold Bac_DnaA_C PF08299.11 AJD67794.1 - 0.087 12.9 0.1 0.35 10.9 0.1 2.0 1 1 1 2 2 2 0 Bacterial dnaA protein helix-turn-helix Phage_holin_2_4 PF16082.5 AJD67798.1 - 0.06 13.1 0.6 0.075 12.8 0.6 1.3 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like Catalase PF00199.19 AJD67799.1 - 4.5e-180 598.8 0.0 5.6e-180 598.5 0.0 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 AJD67799.1 - 4.8e-22 78.0 0.2 8.4e-22 77.2 0.2 1.4 1 0 0 1 1 1 1 Catalase-related immune-responsive Catalase_C PF18011.1 AJD67799.1 - 3e-12 46.4 2.6 5e-12 45.7 2.6 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases Aldo_ket_red PF00248.21 AJD67800.1 - 7.2e-50 169.8 0.0 8.4e-48 163.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF5543 PF17697.1 AJD67800.1 - 0.12 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5543) COesterase PF00135.28 AJD67801.1 - 4.9e-120 401.8 0.0 6e-120 401.5 0.0 1.1 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 AJD67801.1 - 4.4e-05 23.4 1.6 0.00042 20.2 1.6 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold GDC-P PF02347.16 AJD67802.1 - 3.1e-193 642.4 0.5 2.7e-177 589.9 0.1 2.9 3 0 0 3 3 3 2 Glycine cleavage system P-protein Aminotran_5 PF00266.19 AJD67802.1 - 5.5e-06 25.6 0.3 1.6e-05 24.0 0.1 1.9 2 0 0 2 2 2 1 Aminotransferase class-V MFS_1 PF07690.16 AJD67803.1 - 1.7e-51 175.2 72.7 1.5e-43 149.1 43.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD67803.1 - 4.8e-08 32.3 7.9 4.8e-08 32.3 7.9 2.4 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 AJD67803.1 - 4.3e-05 22.1 11.5 4.3e-05 22.1 11.5 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 AJD67803.1 - 0.00056 19.3 3.7 0.00056 19.3 3.7 3.3 2 2 2 4 4 4 1 Uncharacterised MFS-type transporter YbfB DUF697 PF05128.12 AJD67803.1 - 0.046 13.4 1.4 0.1 12.3 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF697) DUF4149 PF13664.6 AJD67803.1 - 3.8 7.9 11.4 1 9.7 1.3 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) Peptidase_M2 PF01401.18 AJD67805.1 - 5.5e-191 636.1 0.0 6.7e-191 635.8 0.0 1.1 1 0 0 1 1 1 1 Angiotensin-converting enzyme Sulfatase PF00884.23 AJD67806.1 - 3.4e-48 164.6 0.0 4.2e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase EptA_B_N PF08019.12 AJD67806.1 - 1.4e-46 158.2 3.3 1.4e-46 158.1 2.4 1.4 1 1 0 1 1 1 1 Phosphoethanolamine transferase EptA/EptB PAP2 PF01569.21 AJD67807.1 - 2.3e-09 37.1 7.9 2.3e-09 37.1 7.9 1.8 2 0 0 2 2 2 1 PAP2 superfamily Wzy_C PF04932.15 AJD67807.1 - 1.6 8.3 6.9 1.1 8.8 0.4 2.5 2 0 0 2 2 2 0 O-Antigen ligase PMT_2 PF13231.6 AJD67808.1 - 2.1e-17 63.8 14.0 2.1e-17 63.8 14.0 3.5 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 AJD67808.1 - 8.3e-05 22.3 13.0 8.3e-05 22.3 13.0 2.3 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 AJD67808.1 - 0.0013 18.1 3.4 0.0013 18.1 3.4 2.0 2 0 0 2 2 2 1 Alg9-like mannosyltransferase family Response_reg PF00072.24 AJD67809.1 - 1.2e-26 93.1 0.0 1.7e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD67809.1 - 5.6e-16 58.4 0.0 1.6e-15 56.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 AJD67810.1 - 5e-11 43.1 0.0 9.4e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67810.1 - 1e-08 35.0 0.1 3.8e-08 33.3 0.1 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD67810.1 - 0.0019 18.0 0.0 0.003 17.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MinE PF03776.14 AJD67812.1 - 3.6e-21 74.9 0.1 4.1e-21 74.7 0.1 1.0 1 0 0 1 1 1 1 Septum formation topological specificity factor MinE CbiA PF01656.23 AJD67813.1 - 3.4e-23 82.1 0.1 4.5e-23 81.7 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AJD67813.1 - 8.6e-21 74.6 0.0 1.4e-20 73.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 AJD67813.1 - 7.2e-19 68.2 0.2 1.2e-17 64.2 0.2 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 AJD67813.1 - 5.2e-12 45.6 0.9 1.1e-11 44.5 0.9 1.5 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 AJD67813.1 - 4.3e-09 36.0 2.4 2.5e-08 33.5 1.2 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 AJD67813.1 - 2.2e-07 30.6 0.1 1e-06 28.4 0.1 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 AJD67813.1 - 7.2e-07 28.9 0.9 1.2e-05 24.9 0.9 2.4 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 AJD67813.1 - 0.00014 21.7 0.1 0.0003 20.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 AJD67813.1 - 0.00026 20.7 2.3 0.00077 19.1 0.8 2.1 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain VirC1 PF07015.11 AJD67813.1 - 0.00029 20.2 0.4 0.0019 17.5 0.3 2.0 2 0 0 2 2 2 1 VirC1 protein MeaB PF03308.16 AJD67813.1 - 0.00095 18.2 3.2 0.0011 18.0 1.6 2.0 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 AJD67813.1 - 0.0021 17.9 0.2 0.0042 16.9 0.2 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 AJD67813.1 - 0.0052 16.6 1.3 0.14 11.9 0.6 2.7 2 1 0 2 2 2 1 AAA domain CobA_CobO_BtuR PF02572.15 AJD67813.1 - 0.0084 16.4 0.9 0.02 15.2 0.9 1.5 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_25 PF13481.6 AJD67813.1 - 0.038 13.6 1.4 0.1 12.2 1.4 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 AJD67813.1 - 0.093 12.3 0.3 0.5 9.9 0.3 1.9 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 AJD67813.1 - 0.13 12.0 0.2 0.23 11.2 0.2 1.6 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 AJD67813.1 - 0.13 12.1 0.5 0.77 9.6 0.1 2.2 2 1 1 3 3 3 0 Adenylylsulphate kinase DUF87 PF01935.17 AJD67813.1 - 0.16 12.1 0.8 0.84 9.7 0.5 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain MinC_C PF03775.16 AJD67814.1 - 4.9e-31 106.7 0.1 7.7e-31 106.1 0.1 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, C-terminal domain MinC_N PF05209.13 AJD67814.1 - 8.4e-20 70.7 0.0 1.3e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, N-terminal domain DEC-1_N PF04625.13 AJD67814.1 - 2.3 7.1 7.4 3.2 6.7 7.4 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region CAP_N PF01213.19 AJD67814.1 - 3.3 7.1 8.6 4.7 6.6 8.6 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Acetyltransf_1 PF00583.25 AJD67815.1 - 2.5e-05 24.5 0.0 3.8e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AJD67815.1 - 0.00016 21.6 0.0 0.00039 20.4 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD67815.1 - 0.0036 17.7 0.4 0.0091 16.4 0.4 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain HisKA_3 PF07730.13 AJD67816.1 - 4.3e-15 56.0 7.1 4.3e-15 56.0 7.1 2.8 3 0 0 3 3 3 1 Histidine kinase HATPase_c_2 PF13581.6 AJD67816.1 - 0.0013 18.7 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 AJD67816.1 - 0.0028 18.1 0.1 0.0081 16.7 0.1 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4118 PF13493.6 AJD67816.1 - 2.3 8.0 10.3 0.44 10.4 5.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) Response_reg PF00072.24 AJD67817.1 - 7.3e-30 103.4 0.3 1.2e-29 102.8 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD67817.1 - 6.3e-21 73.7 0.0 1.1e-20 72.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD67817.1 - 9.5e-07 28.4 0.0 5.2e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 AJD67817.1 - 6.9e-05 22.5 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD67817.1 - 8e-05 22.1 0.0 0.00027 20.4 0.0 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 AJD67817.1 - 0.0013 18.5 0.6 0.027 14.3 0.6 2.4 1 1 0 1 1 1 1 HTH DNA binding domain HTH_40 PF14493.6 AJD67817.1 - 0.0013 19.1 0.0 0.003 18.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 AJD67817.1 - 0.016 15.1 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 ECF sigma factor HTH_23 PF13384.6 AJD67817.1 - 0.024 14.4 0.0 0.074 12.9 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain TadZ_N PF16968.5 AJD67817.1 - 0.037 13.7 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 Pilus assembly protein TadZ N-terminal RepB PF07506.11 AJD67817.1 - 0.05 13.7 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_24 PF13412.6 AJD67817.1 - 0.066 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 AJD67817.1 - 0.11 12.6 0.0 0.32 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 AJD67817.1 - 0.14 12.4 0.0 0.37 11.1 0.0 1.7 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor Phage_terminase PF10668.9 AJD67817.1 - 0.16 12.0 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit Polyketide_cyc2 PF10604.9 AJD67818.1 - 2.3e-06 27.9 0.0 5.2e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MWFE PF15879.5 AJD67818.1 - 0.0067 16.6 0.0 0.021 15.0 0.0 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase MWFE subunit GyrI-like PF06445.15 AJD67818.1 - 0.031 14.6 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 GyrI-like small molecule binding domain CHASE PF03924.13 AJD67818.1 - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 CHASE domain DUF423 PF04241.15 AJD67819.1 - 1.4e-08 34.8 6.5 1.4e-08 34.8 6.5 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF423) HhH-GPD PF00730.25 AJD67820.1 - 2.4e-13 50.5 0.0 3.8e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein VanY PF02557.17 AJD67821.1 - 6.2e-36 123.1 0.0 9.1e-36 122.6 0.0 1.3 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Arc PF03869.14 AJD67822.1 - 0.00069 19.4 0.0 0.00078 19.2 0.0 1.1 1 0 0 1 1 1 1 Arc-like DNA binding domain RHH_5 PF07878.11 AJD67822.1 - 0.0013 18.6 0.3 0.0016 18.2 0.3 1.1 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParD_like PF11903.8 AJD67822.1 - 0.014 15.5 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 ParD-like antitoxin of type II bacterial toxin-antitoxin system Band_7 PF01145.25 AJD67824.1 - 1.9e-25 89.9 0.6 2.5e-25 89.5 0.6 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 AJD67824.1 - 0.017 14.9 0.0 0.025 14.3 0.0 1.4 1 1 0 1 1 1 0 SPFH domain-Band 7 family ATP-grasp PF02222.22 AJD67825.1 - 6e-56 188.7 0.0 9e-56 188.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 AJD67825.1 - 1e-05 25.2 0.0 7.8e-05 22.3 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 AJD67825.1 - 5.8e-05 22.5 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 AJD67825.1 - 6e-05 22.6 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 AJD67825.1 - 0.0013 18.8 0.0 0.004 17.2 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Epimerase PF01370.21 AJD67825.1 - 0.0015 18.0 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family LAL_C2 PF18603.1 AJD67825.1 - 0.022 14.9 0.8 0.057 13.6 0.8 1.7 1 0 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 RmlD_sub_bind PF04321.17 AJD67825.1 - 0.027 13.6 0.0 0.061 12.4 0.0 1.6 1 1 1 2 2 2 0 RmlD substrate binding domain GARS_A PF01071.19 AJD67825.1 - 0.036 13.8 0.0 0.092 12.5 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ThiF PF00899.21 AJD67825.1 - 0.068 12.5 0.2 0.22 10.9 0.1 1.8 2 0 0 2 2 2 0 ThiF family Exo_endo_phos PF03372.23 AJD67826.1 - 3.4e-27 95.5 2.1 4.6e-27 95.1 2.1 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family ATE_C PF04377.15 AJD67827.1 - 1.4e-33 116.4 0.0 1.9e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, C terminus ATE_N PF04376.13 AJD67827.1 - 3.2e-17 62.7 0.0 5.4e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, N terminus Acetyltransf_6 PF13480.7 AJD67827.1 - 2.6e-06 27.7 5.1 4.8e-06 26.8 5.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain EF-hand_5 PF13202.6 AJD67828.1 - 2.2e-28 96.5 15.4 4.6e-06 25.9 0.2 5.3 5 0 0 5 5 5 5 EF hand EF-hand_1 PF00036.32 AJD67828.1 - 2.7e-21 73.5 7.9 0.00037 19.8 0.1 5.3 5 0 0 5 5 5 5 EF hand EF-hand_7 PF13499.6 AJD67828.1 - 6.8e-20 71.3 4.4 4.5e-08 33.4 0.0 4.1 3 1 0 3 3 3 3 EF-hand domain pair EF-hand_6 PF13405.6 AJD67828.1 - 1e-17 62.5 8.8 0.0097 15.8 0.1 5.3 5 0 0 5 5 5 5 EF-hand domain EF-hand_8 PF13833.6 AJD67828.1 - 1e-08 34.8 8.8 0.069 13.0 0.0 5.1 5 0 0 5 5 5 3 EF-hand domain pair SPARC_Ca_bdg PF10591.9 AJD67828.1 - 1e-06 29.1 1.0 0.096 13.0 0.6 3.4 1 1 2 3 3 3 2 Secreted protein acidic and rich in cysteine Ca binding region Dockerin_1 PF00404.18 AJD67828.1 - 0.0015 18.6 12.2 4.9 7.4 0.3 5.1 2 2 3 5 5 5 3 Dockerin type I domain Excalibur PF05901.11 AJD67828.1 - 0.18 12.5 7.9 38 5.0 0.0 4.9 5 0 0 5 5 5 0 Excalibur calcium-binding domain DUF2007 PF09413.10 AJD67831.1 - 1.6e-06 28.2 0.0 3e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Putative prokaryotic signal transducing protein DUF2002 PF09400.10 AJD67831.1 - 0.012 15.6 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2002) 4HBT_3 PF13622.6 AJD67832.1 - 2.1e-61 208.3 1.1 2.7e-61 208.0 1.1 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl_CoA_thio PF02551.15 AJD67832.1 - 2.1e-41 140.9 0.1 4.8e-33 113.8 0.0 3.0 2 1 0 2 2 2 2 Acyl-CoA thioesterase ECH_1 PF00378.20 AJD67833.1 - 1.1e-40 139.6 0.1 1.4e-40 139.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD67833.1 - 1.6e-15 57.4 0.0 1.7e-15 57.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 AJD67833.1 - 0.0089 16.0 0.3 2.3 8.2 0.0 2.3 2 0 0 2 2 2 2 Peptidase family S49 PCuAC PF04314.13 AJD67834.1 - 5e-29 100.3 0.0 6.1e-29 100.0 0.0 1.1 1 0 0 1 1 1 1 Copper chaperone PCu(A)C 4HBT_2 PF13279.6 AJD67835.1 - 4.6e-22 78.8 0.0 5.2e-22 78.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 AJD67835.1 - 6.8e-16 58.4 0.0 1.1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 AJD67835.1 - 1.8e-08 34.0 0.2 4.5e-06 26.1 0.1 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase UvrA_inter PF17760.1 AJD67836.1 - 8.2e-37 125.6 0.2 2.1e-36 124.3 0.2 1.7 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 AJD67836.1 - 3.5e-35 120.7 0.0 3.6e-33 114.2 0.0 3.1 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 AJD67836.1 - 6.2e-21 75.4 0.1 4.1e-10 40.3 0.0 4.5 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.19 AJD67836.1 - 1e-09 38.2 0.0 0.4 10.1 0.1 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AJD67836.1 - 1.4e-08 34.4 1.3 0.00027 20.6 0.4 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 AJD67836.1 - 3.7e-07 30.9 1.5 0.0099 16.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 AJD67836.1 - 8.4e-07 29.5 0.0 0.1 12.9 0.0 3.2 4 0 0 4 4 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 AJD67836.1 - 5.1e-06 26.5 0.0 0.061 13.2 0.0 2.9 3 0 0 3 3 3 2 RsgA GTPase AAA_22 PF13401.6 AJD67836.1 - 5.4e-05 23.5 0.0 0.99 9.7 0.0 3.4 3 0 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.19 AJD67836.1 - 0.0001 22.6 4.2 0.042 14.2 0.2 3.6 3 1 0 3 3 3 1 DnaJ central domain AAA_25 PF13481.6 AJD67836.1 - 0.00011 21.9 0.0 0.32 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 AJD67836.1 - 0.0002 21.5 0.0 5.6 7.1 0.0 4.0 4 0 0 4 4 3 1 AAA domain AAA_18 PF13238.6 AJD67836.1 - 0.00077 20.0 0.4 2.7 8.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 AJD67836.1 - 0.001 19.0 8.8 0.047 13.5 0.0 4.0 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 AJD67836.1 - 0.0014 18.6 0.0 0.3 11.0 0.0 2.4 2 0 0 2 2 2 1 NACHT domain APS_kinase PF01583.20 AJD67836.1 - 0.0022 17.9 2.8 1.2 9.0 0.0 3.7 4 0 0 4 4 4 1 Adenylylsulphate kinase cobW PF02492.19 AJD67836.1 - 0.004 16.8 1.0 0.25 10.9 0.2 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 AJD67836.1 - 0.0049 16.6 0.0 0.19 11.5 0.0 2.6 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 AJD67836.1 - 0.0054 16.0 0.0 1.9 7.6 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 AJD67836.1 - 0.0077 16.3 0.0 4.2 7.4 0.0 2.7 3 0 0 3 3 2 1 AAA domain ATPase PF06745.13 AJD67836.1 - 0.015 14.6 0.0 6.7 6.0 0.0 2.5 2 0 0 2 2 2 0 KaiC AAA_24 PF13479.6 AJD67836.1 - 0.029 14.1 0.3 8.6 6.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain Anti-TRAP PF15777.5 AJD67836.1 - 0.031 14.2 5.0 6.9 6.7 0.4 3.6 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein MMR_HSR1 PF01926.23 AJD67836.1 - 0.035 14.2 0.1 2.4 8.3 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 AJD67836.1 - 0.036 13.8 0.8 2.9 7.5 0.0 3.2 4 0 0 4 4 4 0 AAA domain T2SSE PF00437.20 AJD67836.1 - 0.039 13.0 0.1 5 6.1 0.1 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 AJD67836.1 - 0.041 13.8 0.4 1.4 8.8 0.0 2.9 3 0 0 3 3 2 0 NTPase ATPase_2 PF01637.18 AJD67836.1 - 0.086 12.7 0.0 6.5 6.6 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MeaB PF03308.16 AJD67836.1 - 0.12 11.3 0.0 2.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 AJD67836.1 - 0.13 12.5 0.1 19 5.4 0.1 2.7 2 0 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 AJD67836.1 - 3.5 7.8 9.6 40 4.4 0.1 3.8 3 0 0 3 3 3 0 Zinc ribbon domain Ribosomal_L21p PF00829.21 AJD67837.1 - 8.6e-37 125.5 2.2 9.6e-37 125.3 2.2 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein Ribosomal_L27 PF01016.19 AJD67838.1 - 3.1e-38 129.6 1.7 3.5e-38 129.5 1.7 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein GTP1_OBG PF01018.22 AJD67839.1 - 2.1e-59 199.5 7.9 2.9e-59 199.1 7.9 1.2 1 0 0 1 1 1 1 GTP1/OBG MMR_HSR1 PF01926.23 AJD67839.1 - 8.3e-24 83.9 0.0 1.2e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AJD67839.1 - 2.7e-07 30.3 0.0 7.4e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B MeaB PF03308.16 AJD67839.1 - 0.027 13.5 0.3 0.46 9.4 0.0 2.4 2 1 1 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 AJD67839.1 - 0.13 11.9 0.0 16 5.0 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S20p PF01649.18 AJD67840.1 - 1e-25 90.2 11.3 1.1e-25 90.0 11.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 DUF4798 PF16055.5 AJD67840.1 - 0.13 12.5 1.3 4.2 7.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4798) MurJ PF03023.14 AJD67841.1 - 1e-121 406.7 25.2 4.7e-121 404.5 25.2 1.8 1 1 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_3 PF13440.6 AJD67841.1 - 3.8e-09 36.2 0.6 3.8e-09 36.2 0.6 2.3 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 AJD67841.1 - 6.2e-07 29.6 9.7 6.2e-07 29.6 9.7 3.5 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 AJD67841.1 - 9.8e-06 25.3 20.5 0.0004 20.1 5.3 3.1 3 0 0 3 3 3 2 MatE FAD_syn PF06574.12 AJD67842.1 - 1.6e-44 151.6 0.0 3.5e-44 150.5 0.0 1.5 2 0 0 2 2 2 1 FAD synthetase Flavokinase PF01687.17 AJD67842.1 - 8.4e-37 125.9 0.0 4.7e-36 123.5 0.0 2.0 2 0 0 2 2 2 1 Riboflavin kinase tRNA-synt_1 PF00133.22 AJD67843.1 - 1.3e-195 651.2 0.0 1.5e-195 651.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 AJD67843.1 - 6e-27 94.5 0.0 1e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 AJD67843.1 - 3.3e-20 72.2 0.0 5.2e-10 38.6 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 AJD67843.1 - 1.8e-08 34.1 0.0 1.3e-06 28.0 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.14 AJD67843.1 - 2.6e-07 30.4 8.5 3.5e-07 30.0 4.2 2.6 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS tRNA-synt_1_2 PF13603.6 AJD67843.1 - 3.4e-06 26.7 0.0 6.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 AJD67843.1 - 4.3e-06 25.9 0.0 8.3e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (K) RNA_pol_N PF01194.17 AJD67843.1 - 0.044 14.1 0.0 5.2 7.5 0.0 2.6 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit Peptidase_A8 PF01252.18 AJD67844.1 - 1.1e-36 126.2 1.1 1.3e-36 126.0 1.1 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II LYTB PF02401.18 AJD67845.1 - 1.1e-91 306.8 0.0 1.3e-91 306.6 0.0 1.0 1 0 0 1 1 1 1 LytB protein DUF1363 PF07101.11 AJD67845.1 - 0.036 14.4 0.0 0.24 11.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1363) TPP_enzyme_M PF00205.22 AJD67845.1 - 0.085 12.6 0.1 0.43 10.3 0.0 2.1 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Gln-synt_C-ter PF18318.1 AJD67845.1 - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutamine synthetase C-terminal domain SIS PF01380.22 AJD67845.1 - 0.11 12.3 0.0 0.48 10.3 0.0 1.9 2 0 0 2 2 2 0 SIS domain DUF3658 PF12395.8 AJD67845.1 - 0.15 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function COX_ARM PF06481.14 AJD67846.1 - 3.5e-16 58.8 0.4 6.7e-16 57.9 0.4 1.5 1 0 0 1 1 1 1 COX Aromatic Rich Motif COX2 PF00116.20 AJD67846.1 - 1.4e-08 34.6 0.1 3.3e-07 30.2 0.0 2.4 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain E1-E2_ATPase PF00122.20 AJD67846.1 - 0.00088 18.8 1.1 0.0015 18.1 1.1 1.3 1 0 0 1 1 1 1 E1-E2 ATPase COX2_TM PF02790.15 AJD67846.1 - 0.0024 18.0 3.1 0.0045 17.1 3.1 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Sulf_transp PF04143.14 AJD67846.1 - 0.0094 15.5 0.4 0.013 15.1 0.4 1.2 1 0 0 1 1 1 1 Sulphur transport DUF1461 PF07314.11 AJD67846.1 - 0.046 13.6 0.4 0.077 12.9 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) DUF3112 PF11309.8 AJD67846.1 - 0.059 12.8 0.8 0.085 12.3 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) DUF4079 PF13301.6 AJD67846.1 - 0.16 12.1 1.2 0.25 11.5 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) COX1 PF00115.20 AJD67847.1 - 2.2e-141 471.6 70.8 2.2e-141 471.6 70.8 2.1 2 0 0 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 AJD67848.1 - 8.3e-14 52.0 14.0 1.2e-13 51.5 14.0 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III COX4_pro PF03626.14 AJD67849.1 - 6.7e-15 55.3 10.5 8.6e-15 54.9 10.5 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF2781 PF10914.8 AJD67849.1 - 0.00027 21.4 0.8 0.00029 21.3 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2781) ABC2_membrane_5 PF13346.6 AJD67849.1 - 0.043 13.4 9.1 0.054 13.1 9.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein FA_hydroxylase PF04116.13 AJD67849.1 - 0.089 13.1 6.6 0.057 13.8 3.7 1.8 1 1 1 2 2 2 0 Fatty acid hydroxylase superfamily ATP1G1_PLM_MAT8 PF02038.16 AJD67849.1 - 0.14 11.7 6.1 0.17 11.3 0.7 2.3 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Ferric_reduct PF01794.19 AJD67849.1 - 1.5 9.0 10.4 9.2 6.4 10.5 2.2 1 1 1 2 2 2 0 Ferric reductase like transmembrane component DUF3040 PF11239.8 AJD67849.1 - 3.9 7.8 8.2 4.3 7.7 5.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Peptidase_M61_N PF17899.1 AJD67850.1 - 1.8e-36 125.7 0.0 2.8e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase M61 N-terminal domain Peptidase_M61 PF05299.12 AJD67850.1 - 5.9e-34 117.0 0.2 1.1e-33 116.1 0.2 1.5 1 0 0 1 1 1 1 M61 glycyl aminopeptidase TPR_3 PF07720.12 AJD67850.1 - 2.9e-09 36.7 0.4 2.9e-09 36.7 0.4 2.0 2 0 0 2 2 2 1 Tetratricopeptide repeat PDZ_6 PF17820.1 AJD67850.1 - 0.00042 20.1 0.1 0.0018 18.1 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ_2 PF13180.6 AJD67850.1 - 0.0022 18.3 0.0 0.012 15.9 0.0 2.3 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 AJD67850.1 - 0.062 13.7 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 PDZ domain ATPase PF06745.13 AJD67851.1 - 8.6e-17 61.3 0.0 3.6e-11 42.9 0.1 2.2 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.6 AJD67851.1 - 1.4e-13 50.8 1.1 1.4e-12 47.7 1.1 2.3 1 1 0 1 1 1 1 AAA domain ChlI PF13541.6 AJD67851.1 - 1.5e-10 40.9 0.0 3.2e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Rubredoxin_2 PF18073.1 AJD67851.1 - 4e-10 39.2 7.7 6.1e-10 38.6 7.7 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain DnaB_C PF03796.15 AJD67851.1 - 4.3e-05 23.0 0.0 7.6e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 AJD67851.1 - 0.00015 20.5 0.1 0.033 12.8 0.0 2.8 1 1 2 3 3 3 2 GvpD gas vesicle protein AAA_16 PF13191.6 AJD67851.1 - 0.00016 22.1 0.2 0.00036 21.0 0.2 1.5 1 0 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.11 AJD67851.1 - 0.00018 20.8 0.1 0.0011 18.2 0.1 2.1 2 0 0 2 2 2 1 Rad51 Lon_C PF05362.13 AJD67851.1 - 0.00025 20.7 0.9 0.00048 19.7 0.1 1.8 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain AAA_24 PF13479.6 AJD67851.1 - 0.0018 18.0 0.0 0.0083 15.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD67851.1 - 0.0028 17.9 0.0 0.006 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.11 AJD67851.1 - 0.0035 16.5 0.2 0.0056 15.9 0.2 1.3 1 0 0 1 1 1 1 PAXNEB protein RecA PF00154.21 AJD67851.1 - 0.015 14.7 0.8 0.025 14.0 0.6 1.4 1 1 0 1 1 1 0 recA bacterial DNA recombination protein DUF2075 PF09848.9 AJD67851.1 - 0.016 14.4 0.0 0.022 14.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 AJD67851.1 - 0.03 14.0 1.1 0.22 11.2 1.1 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 AJD67851.1 - 0.048 14.1 0.0 0.086 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DNA_RNApol_7kD PF03604.13 AJD67851.1 - 0.083 12.6 3.0 0.15 11.7 3.0 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zeta_toxin PF06414.12 AJD67851.1 - 0.092 12.0 0.1 0.23 10.7 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin MCM PF00493.23 AJD67851.1 - 0.099 11.7 0.0 0.38 9.8 0.0 1.8 2 0 0 2 2 2 0 MCM P-loop domain AAA_29 PF13555.6 AJD67851.1 - 0.14 11.9 0.3 0.33 10.7 0.3 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zn-ribbon_8 PF09723.10 AJD67851.1 - 0.14 12.3 0.8 0.31 11.2 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DAP3 PF10236.9 AJD67851.1 - 0.15 11.2 0.1 0.26 10.4 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 NACHT PF05729.12 AJD67851.1 - 0.2 11.6 0.1 0.38 10.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 AJD67851.1 - 0.24 11.7 0.9 0.7 10.2 0.1 2.2 2 1 0 2 2 1 0 AAA domain Zn_ribbon_SprT PF17283.2 AJD67851.1 - 8.5 6.4 7.3 12 5.9 1.0 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain DUF805 PF05656.14 AJD67852.1 - 1.2e-34 118.9 0.8 1.4e-34 118.7 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) FA_desaturase PF00487.24 AJD67852.1 - 0.0075 16.1 3.5 0.0075 16.1 3.5 1.6 1 1 1 2 2 2 1 Fatty acid desaturase DUF4271 PF14093.6 AJD67852.1 - 0.01 15.8 0.8 0.015 15.2 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) Acyl_transf_3 PF01757.22 AJD67852.1 - 0.017 14.2 5.1 0.035 13.2 5.2 1.4 1 1 0 1 1 1 0 Acyltransferase family EI24 PF07264.11 AJD67852.1 - 0.019 15.2 2.4 0.019 15.2 2.4 2.0 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Peptidase_U4 PF03419.13 AJD67852.1 - 0.034 13.4 3.5 0.043 13.1 3.5 1.2 1 1 0 1 1 1 0 Sporulation factor SpoIIGA TctB PF07331.11 AJD67852.1 - 0.035 14.4 7.8 0.051 13.9 7.8 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Saf_2TM PF18303.1 AJD67852.1 - 0.17 11.4 0.9 0.56 9.8 0.9 1.8 1 1 0 1 1 1 0 SAVED-fused 2TM effector domain DUF2207 PF09972.9 AJD67852.1 - 0.31 9.8 7.2 0.58 8.8 7.2 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) MIG-14_Wnt-bd PF06664.12 AJD67852.1 - 0.39 9.9 4.2 0.74 9.0 4.3 1.3 1 1 0 1 1 1 0 Wnt-binding factor required for Wnt secretion Herpes_US9 PF06072.11 AJD67852.1 - 1.7 8.6 4.9 19 5.2 0.1 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 LMBR1 PF04791.16 AJD67852.1 - 3.9 6.3 6.1 6.6 5.5 6.1 1.3 1 1 0 1 1 1 0 LMBR1-like membrane protein Trans_reg_C PF00486.28 AJD67853.1 - 5.4e-19 68.1 0.0 1.1e-18 67.0 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 AJD67853.1 - 0.012 15.8 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 Response regulator receiver domain HTH_18 PF12833.7 AJD67854.1 - 8e-17 61.3 0.1 8e-17 61.3 0.1 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD67854.1 - 2e-13 50.0 0.0 7.2e-07 29.1 0.0 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family TPR_8 PF13181.6 AJD67854.1 - 0.016 15.3 6.9 0.71 10.2 0.4 4.1 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_16 PF13432.6 AJD67854.1 - 0.032 14.9 20.3 0.19 12.4 0.0 5.3 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 AJD67854.1 - 0.09 13.1 19.4 0.18 12.1 1.1 5.0 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_2 PF07719.17 AJD67854.1 - 0.58 10.4 16.6 1.1 9.5 0.5 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_21 PF09976.9 AJD67854.1 - 0.76 9.5 5.4 0.21 11.3 0.2 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat-like domain TPR_1 PF00515.28 AJD67854.1 - 8.6 6.4 10.0 30 4.6 1.3 4.6 6 0 0 6 6 6 0 Tetratricopeptide repeat HATPase_c_3 PF13589.6 AJD67855.1 - 2.7e-10 40.2 0.0 4.5e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HSP90 PF00183.18 AJD67855.1 - 9.5e-08 31.4 0.0 1.6e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Hsp90 protein HATPase_c PF02518.26 AJD67855.1 - 3e-05 24.5 0.0 5.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TetR_C_14 PF17754.1 AJD67855.1 - 5.4 7.0 9.3 4.5 7.3 2.5 3.2 3 0 0 3 3 3 0 MftR C-terminal domain TPR_19 PF14559.6 AJD67856.1 - 0.0002 21.8 0.3 0.0002 21.8 0.3 5.9 5 1 1 6 6 6 1 Tetratricopeptide repeat TPR_8 PF13181.6 AJD67856.1 - 0.0046 17.1 2.1 0.35 11.2 0.1 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_20 PF14561.6 AJD67856.1 - 0.013 15.9 0.2 0.013 15.9 0.2 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_7 PF13176.6 AJD67856.1 - 0.022 14.8 0.5 0.022 14.8 0.5 5.4 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD67856.1 - 0.023 15.3 3.2 0.023 15.3 3.2 8.7 9 0 0 9 9 9 0 Tetratricopeptide repeat TPR_17 PF13431.6 AJD67856.1 - 0.049 14.0 0.2 3.9 8.1 0.1 4.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.17 AJD67856.1 - 0.06 13.5 0.6 0.06 13.5 0.6 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_11 PF13414.6 AJD67856.1 - 0.099 12.4 0.4 11 5.8 0.0 3.1 2 0 0 2 2 2 0 TPR repeat PrmC_N PF17827.1 AJD67856.1 - 0.16 12.5 4.6 0.38 11.4 0.8 3.1 2 0 0 2 2 2 0 PrmC N-terminal domain ANAPC3 PF12895.7 AJD67856.1 - 2.8 8.2 8.4 0.52 10.6 0.6 3.8 5 0 0 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 3 RsbRD_N PF14361.6 AJD67857.1 - 2.2e-21 76.5 2.2 6.2e-21 75.0 2.2 1.8 1 0 0 1 1 1 1 RsbT co-antagonist protein rsbRD N-terminal domain STAS PF01740.21 AJD67857.1 - 3.6e-08 33.0 0.0 6.9e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 STAS domain ICE2 PF08426.10 AJD67857.1 - 0.035 13.2 0.1 0.045 12.9 0.1 1.2 1 0 0 1 1 1 0 ICE2 STAS_2 PF13466.6 AJD67857.1 - 0.039 14.3 1.4 0.086 13.2 0.1 2.3 2 1 1 3 3 3 0 STAS domain STAS PF01740.21 AJD67858.1 - 0.00029 20.5 0.1 0.00033 20.3 0.1 1.2 1 0 0 1 1 1 1 STAS domain HATPase_c PF02518.26 AJD67859.1 - 3.2e-07 30.8 0.0 4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD67859.1 - 2.3e-06 27.6 0.0 2.8e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_2 PF13581.6 AJD67860.1 - 3.6e-10 39.9 0.1 1.1e-08 35.1 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SpoIIE PF07228.12 AJD67860.1 - 3.6e-07 30.3 3.9 6.2e-07 29.5 2.0 2.2 2 1 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) HATPase_c PF02518.26 AJD67861.1 - 2.4e-25 89.2 0.0 6.6e-25 87.8 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67861.1 - 1.2e-15 57.3 0.0 1.2e-15 57.3 0.0 2.3 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain Rootletin PF15035.6 AJD67861.1 - 0.016 15.2 1.2 0.028 14.5 1.2 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion FlaC_arch PF05377.11 AJD67861.1 - 0.028 14.8 0.9 0.11 12.9 0.1 2.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.8 AJD67861.1 - 0.03 14.5 2.2 0.06 13.6 2.2 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding APG6_N PF17675.1 AJD67861.1 - 0.03 14.8 2.9 0.048 14.2 2.9 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region YPEB PF14620.6 AJD67861.1 - 0.036 13.4 0.3 0.043 13.2 0.3 1.2 1 0 0 1 1 1 0 YpeB sporulation DUF4201 PF13870.6 AJD67861.1 - 0.037 13.8 0.3 0.059 13.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Golgin_A5 PF09787.9 AJD67861.1 - 0.04 13.4 2.6 0.053 13.0 2.6 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 Spc7 PF08317.11 AJD67861.1 - 0.065 12.1 1.9 0.1 11.4 1.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein CorA PF01544.18 AJD67861.1 - 0.17 11.2 2.2 0.26 10.6 2.2 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein COG2 PF06148.11 AJD67861.1 - 0.19 11.8 1.2 0.26 11.4 0.4 1.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Response_reg PF00072.24 AJD67862.1 - 1e-41 141.6 0.2 3e-20 72.5 0.0 2.7 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 AJD67862.1 - 1.1e-19 71.0 0.0 2.3e-19 69.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 AJD67862.1 - 1.2e-10 41.6 0.2 3.7e-10 40.0 0.2 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 AJD67862.1 - 4.1e-06 26.7 0.3 4.1e-06 26.7 0.3 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 AJD67862.1 - 0.00017 21.5 0.0 0.00062 19.7 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD67862.1 - 0.00028 20.9 0.1 0.0016 18.4 0.0 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 AJD67862.1 - 0.022 14.6 0.0 0.049 13.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Glyco_hydro_43 PF04616.14 AJD67863.1 - 1.2e-98 329.9 0.2 1.7e-98 329.5 0.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 AJD67863.1 - 1.7e-22 80.1 0.0 2.6e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain Glyco_hydro_32N PF00251.20 AJD67863.1 - 0.088 12.4 0.0 8.7 5.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 32 N-terminal domain TonB_dep_Rec PF00593.24 AJD67864.1 - 6.2e-38 131.9 31.6 6.2e-38 131.9 31.6 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD67864.1 - 2.9e-12 47.1 6.6 4e-12 46.7 0.3 3.7 3 1 0 3 3 3 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD67864.1 - 0.0016 17.5 0.2 0.075 12.0 0.0 2.6 2 1 0 2 2 2 2 Outer membrane protein beta-barrel family Thioredoxin PF00085.20 AJD67865.1 - 1.6e-25 89.1 0.0 9.1e-25 86.6 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 AJD67865.1 - 1.1e-06 29.0 4.1 2.8e-05 24.5 0.0 3.5 2 2 1 3 3 3 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 AJD67865.1 - 0.00037 20.8 0.0 0.12 12.7 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 AJD67865.1 - 0.00068 19.4 0.0 0.00088 19.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 AJD67865.1 - 0.013 15.6 1.1 0.023 14.7 0.0 2.0 3 0 0 3 3 2 0 Thioredoxin domain Thioredoxin_7 PF13899.6 AJD67865.1 - 0.018 15.2 0.8 0.062 13.5 0.0 2.1 3 0 0 3 3 3 0 Thioredoxin-like TrbC_Ftype PF09673.10 AJD67865.1 - 0.034 14.2 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.11 AJD67865.1 - 0.05 13.6 0.0 0.075 13.0 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.21 AJD67865.1 - 0.081 12.8 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.10 AJD67865.1 - 0.1 12.3 0.1 0.15 11.8 0.1 1.4 1 1 0 1 1 1 0 Redoxin OST3_OST6 PF04756.13 AJD67865.1 - 0.26 10.6 0.0 0.35 10.2 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family zinc_ribbon_4 PF13717.6 AJD67865.1 - 0.46 10.5 2.2 1.5 8.8 2.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF1428 PF07237.11 AJD67866.1 - 4.8e-46 155.2 0.5 5.5e-46 155.0 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) Corona_5a PF06336.11 AJD67866.1 - 0.1 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Coronavirus 5a protein Response_reg PF00072.24 AJD67867.1 - 8e-24 84.0 0.0 1.3e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 AJD67867.1 - 3e-14 53.5 0.0 5.1e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67867.1 - 1.9e-12 47.0 1.3 6e-12 45.4 1.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain CheB_methylest PF01339.17 AJD67868.1 - 5.7e-55 185.6 0.1 6.5e-55 185.4 0.1 1.0 1 0 0 1 1 1 1 CheB methylesterase Abhydrolase_3 PF07859.13 AJD67868.1 - 0.015 15.2 0.6 0.024 14.5 0.6 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold CheR PF01739.18 AJD67869.1 - 1.4e-35 122.6 0.0 2e-35 122.1 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 AJD67869.1 - 1e-08 34.8 1.9 1e-08 34.8 1.9 2.0 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Response_reg PF00072.24 AJD67870.1 - 3.9e-62 207.3 1.9 8.5e-29 100.0 0.4 3.6 3 0 0 3 3 3 3 Response regulator receiver domain HATPase_c PF02518.26 AJD67870.1 - 1e-29 103.3 0.0 2e-29 102.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD67870.1 - 1.1e-17 63.8 0.4 1.1e-17 63.8 0.4 4.1 5 0 0 5 5 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 AJD67870.1 - 4.1e-11 43.3 0.9 4.1e-11 43.3 0.9 2.7 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 AJD67870.1 - 1.2e-10 41.9 0.1 4.6e-10 39.9 0.1 2.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 AJD67870.1 - 2.7e-08 34.5 0.2 1.2e-07 32.4 0.2 2.2 1 0 0 1 1 1 1 GAF domain SBP_bac_3 PF00497.20 AJD67870.1 - 0.16 11.4 0.8 8 5.8 0.1 3.1 3 0 0 3 3 3 0 Bacterial extracellular solute-binding proteins, family 3 Atg14 PF10186.9 AJD67870.1 - 0.16 11.0 11.5 0.25 10.4 11.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 AJD67870.1 - 0.27 10.1 20.3 0.48 9.3 20.3 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein ERM PF00769.19 AJD67870.1 - 0.39 10.5 19.5 0.78 9.5 19.5 1.4 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Exonuc_VII_L PF02601.15 AJD67870.1 - 0.93 9.0 11.9 3.1 7.3 11.8 1.9 2 0 0 2 2 2 0 Exonuclease VII, large subunit Lin-8 PF03353.15 AJD67870.1 - 1.2 8.6 7.8 1.9 8.0 7.8 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist APG6_N PF17675.1 AJD67870.1 - 1.3 9.6 21.7 4.5 7.8 21.7 2.0 1 0 0 1 1 1 0 Apg6 coiled-coil region Jnk-SapK_ap_N PF09744.9 AJD67870.1 - 2 8.7 21.1 4.5 7.5 21.1 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 V_ATPase_I PF01496.19 AJD67870.1 - 4.8 5.0 7.3 6.5 4.5 7.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3450 PF11932.8 AJD67870.1 - 9.2 5.5 22.4 11 5.2 21.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) HATPase_c PF02518.26 AJD67871.1 - 6.2e-14 52.5 0.0 1.4e-13 51.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 AJD67871.1 - 4.3e-09 36.6 0.0 6.7e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD67871.1 - 9.6e-08 32.0 0.0 2.2e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 AJD67871.1 - 1.8e-07 31.4 0.0 3.5e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 AJD67871.1 - 1.2e-06 28.7 0.0 1.9e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 AJD67871.1 - 2.1e-05 24.5 1.0 2.1e-05 24.5 1.0 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD67871.1 - 0.22 11.4 0.0 0.41 10.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD67872.1 - 1.7e-18 66.8 0.0 3e-18 66.0 0.0 1.4 1 1 0 1 1 1 1 Response regulator receiver domain Glyco_hydro_16 PF00722.21 AJD67873.1 - 9e-22 77.4 0.0 1.3e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 SKN1 PF03935.15 AJD67873.1 - 2.4e-10 39.5 0.2 3.2e-05 22.5 0.4 2.4 2 1 0 2 2 2 2 Beta-glucan synthesis-associated protein (SKN1) Exop_C PF18559.1 AJD67873.1 - 0.0028 17.5 0.0 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 Galactose-binding domain-like GH101_N PF17995.1 AJD67873.1 - 0.072 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase N-terminal Alpha-L-AF_C PF06964.12 AJD67874.1 - 2.4e-40 138.4 0.1 4.8e-40 137.4 0.1 1.5 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain Glyco_hydro_30C PF17189.4 AJD67874.1 - 0.0035 17.5 0.1 0.0082 16.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 beta sandwich domain Glyco_hydro_79n PF03662.14 AJD67874.1 - 0.046 12.6 0.0 0.087 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain Melibiase_C PF17801.1 AJD67874.1 - 0.11 12.6 0.0 1.3 9.1 0.0 2.5 1 1 0 1 1 1 0 Alpha galactosidase C-terminal beta sandwich domain Aldose_epim PF01263.20 AJD67875.1 - 3e-75 253.3 0.0 3.4e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 Aldose 1-epimerase Cytochrom_C_asm PF01578.20 AJD67876.1 - 8.7e-32 110.6 17.7 8.7e-32 110.6 17.7 1.4 1 1 0 1 1 1 1 Cytochrome C assembly protein SRP54 PF00448.22 AJD67877.1 - 3e-74 248.9 2.6 5.6e-74 248.0 2.6 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 AJD67877.1 - 7.7e-33 113.1 5.9 7.7e-33 113.1 5.9 3.2 4 0 0 4 4 2 1 Signal peptide binding domain SRP54_N PF02881.19 AJD67877.1 - 1.6e-19 69.9 0.6 1.6e-19 69.9 0.6 2.7 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 AJD67877.1 - 7.3e-07 28.7 0.1 1.5e-06 27.6 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 AJD67877.1 - 8.4e-07 29.1 0.0 5.3e-06 26.5 0.0 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 AJD67877.1 - 6.4e-05 22.6 1.5 0.0009 18.9 1.5 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 AJD67877.1 - 7e-05 23.1 0.0 0.00015 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD67877.1 - 0.00027 21.1 0.0 0.0006 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 AJD67877.1 - 0.00097 19.1 0.2 0.0022 17.9 0.2 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD67877.1 - 0.0023 18.3 0.4 0.0057 17.1 0.2 1.8 1 1 1 2 2 2 1 AAA ATPase domain APS_kinase PF01583.20 AJD67877.1 - 0.0036 17.2 0.0 0.0084 16.0 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase Helicase_RecD PF05127.14 AJD67877.1 - 0.0043 16.9 0.7 0.0087 15.9 0.7 1.5 1 0 0 1 1 1 1 Helicase ATP_bind_1 PF03029.17 AJD67877.1 - 0.0082 16.0 0.4 0.045 13.5 0.4 2.3 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 AJD67877.1 - 0.0093 15.7 1.8 0.0093 15.7 1.8 2.4 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 AJD67877.1 - 0.01 15.3 0.9 0.016 14.7 0.1 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 AJD67877.1 - 0.012 16.2 0.0 0.036 14.6 0.0 1.9 1 0 0 1 1 1 0 ABC transporter ParA PF10609.9 AJD67877.1 - 0.012 15.1 0.3 0.067 12.6 0.1 2.4 3 0 0 3 3 3 0 NUBPL iron-transfer P-loop NTPase Thymidylate_kin PF02223.17 AJD67877.1 - 0.016 14.9 0.5 0.016 14.9 0.5 2.3 3 1 0 3 3 2 0 Thymidylate kinase AAA_14 PF13173.6 AJD67877.1 - 0.016 15.2 0.0 0.048 13.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain ResIII PF04851.15 AJD67877.1 - 0.019 15.0 0.1 0.055 13.5 0.1 1.8 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HrpJ PF07201.11 AJD67877.1 - 0.02 15.2 2.2 0.096 13.0 2.2 2.1 1 1 0 1 1 1 0 HrpJ-like domain ATPase PF06745.13 AJD67877.1 - 0.025 13.9 0.2 0.067 12.5 0.0 1.7 2 0 0 2 2 2 0 KaiC AAA PF00004.29 AJD67877.1 - 0.033 14.6 1.0 0.12 12.8 0.5 2.2 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 AJD67877.1 - 0.037 13.9 0.3 0.092 12.7 0.3 1.8 1 1 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 AJD67877.1 - 0.042 13.8 0.3 0.16 11.9 0.3 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 AJD67877.1 - 0.048 12.9 0.1 0.081 12.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 AJD67877.1 - 0.057 13.8 1.5 0.11 12.8 1.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AJD67877.1 - 0.08 13.2 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AJD67877.1 - 0.082 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 AJD67877.1 - 0.13 12.4 2.6 0.3 11.2 0.2 2.8 3 1 0 3 3 2 0 50S ribosome-binding GTPase TsaE PF02367.17 AJD67877.1 - 0.2 11.7 0.4 0.56 10.2 0.4 1.8 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 AJD67877.1 - 0.21 12.1 1.8 0.26 11.8 0.0 2.1 2 0 0 2 2 1 0 AAA domain Shikimate_DH PF01488.20 AJD67877.1 - 0.73 9.9 6.2 3 7.9 1.1 3.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ArsA_ATPase PF02374.15 AJD67877.1 - 1.6 7.9 6.9 0.18 10.9 0.2 2.5 3 0 0 3 3 3 0 Anion-transporting ATPase DUF2987 PF11205.8 AJD67877.1 - 6.6 6.6 5.8 6.6 6.6 1.5 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2987) NMO PF03060.15 AJD67878.1 - 2e-61 208.2 3.6 2.4e-61 208.0 3.6 1.0 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 AJD67878.1 - 3.2e-07 29.7 4.1 2.7e-05 23.4 4.1 2.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 AJD67878.1 - 0.00011 21.6 0.6 0.00015 21.0 0.6 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 AJD67878.1 - 0.00016 20.9 6.0 0.00016 20.9 6.0 2.1 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 AJD67878.1 - 0.00037 20.0 0.0 0.00081 18.9 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 AJD67878.1 - 0.0023 17.1 0.0 0.0041 16.3 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 AJD67878.1 - 0.0079 15.5 4.7 0.018 14.4 4.7 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 AJD67878.1 - 0.018 14.2 0.4 0.036 13.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) NanE PF04131.14 AJD67878.1 - 0.019 14.1 0.0 0.04 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.12 AJD67878.1 - 0.065 12.6 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator Glu_synthase PF01645.17 AJD67878.1 - 0.55 9.3 4.8 0.96 8.5 4.8 1.3 1 1 0 1 1 1 0 Conserved region in glutamate synthase Aminotran_4 PF01063.19 AJD67879.1 - 5.9e-34 117.9 0.0 7.5e-34 117.5 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Ribosomal_S16 PF00886.19 AJD67880.1 - 4.4e-24 84.3 0.1 5.3e-24 84.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S16 RimM PF01782.18 AJD67881.1 - 6.8e-21 74.3 0.1 1.1e-20 73.6 0.1 1.3 1 0 0 1 1 1 1 RimM N-terminal domain PRC PF05239.16 AJD67881.1 - 5.9e-06 26.3 0.5 1.1e-05 25.4 0.5 1.5 1 0 0 1 1 1 1 PRC-barrel domain tRNA_m1G_MT PF01746.21 AJD67882.1 - 5.5e-56 189.4 0.0 6.4e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase Ribosomal_L19 PF01245.20 AJD67883.1 - 2e-45 153.3 2.3 2.4e-45 153.0 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L19 MatE PF01554.18 AJD67884.1 - 1e-14 54.5 3.5 1.5e-14 54.0 3.5 1.2 1 0 0 1 1 1 1 MatE ABC2_membrane_3 PF12698.7 AJD67884.1 - 1.2 8.2 5.2 1.6 7.7 5.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein MatE PF01554.18 AJD67885.1 - 9.1e-34 116.4 26.7 1.7e-30 105.8 12.6 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 AJD67885.1 - 2.7e-13 50.2 13.3 2.7e-13 50.2 13.3 2.7 2 2 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 AJD67885.1 - 0.0019 17.7 18.9 0.0097 15.3 2.3 2.6 1 1 0 2 2 2 2 Polysaccharide biosynthesis protein HTH_11 PF08279.12 AJD67886.1 - 1.2e-12 47.6 0.1 2.2e-12 46.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain WYL PF13280.6 AJD67886.1 - 8.1e-08 32.5 0.1 1.3e-07 31.8 0.1 1.3 1 0 0 1 1 1 1 WYL domain HTH_IclR PF09339.10 AJD67886.1 - 0.55 10.1 5.2 1.3 8.8 5.2 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain GST_N_3 PF13417.6 AJD67887.1 - 2.6e-15 56.6 0.0 5.2e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AJD67887.1 - 6e-14 52.2 0.0 1.2e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD67887.1 - 6.3e-10 39.2 0.0 1.1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AJD67887.1 - 4.4e-05 23.6 0.0 8.6e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AJD67887.1 - 0.0016 18.6 0.0 0.0039 17.4 0.0 1.5 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD67887.1 - 0.0021 18.1 0.4 0.0048 16.9 0.4 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain S4 PF01479.25 AJD67888.1 - 8.8e-08 31.7 0.0 2.7e-07 30.2 0.0 1.8 2 0 0 2 2 2 1 S4 domain peroxidase PF00141.23 AJD67889.1 - 2.8e-90 302.0 0.4 2.5e-47 161.5 0.0 2.2 2 0 0 2 2 2 2 Peroxidase GST_C_3 PF14497.6 AJD67889.1 - 0.049 13.8 0.0 1.7 8.9 0.0 2.5 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain DUF937 PF06078.11 AJD67890.1 - 4.8e-28 98.5 18.8 4.8e-28 98.5 18.8 2.0 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF937) MutS_V PF00488.21 AJD67891.1 - 1.4e-83 279.6 0.1 2.2e-83 278.9 0.1 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 AJD67891.1 - 2.8e-41 140.3 0.0 5.7e-41 139.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 AJD67891.1 - 1.2e-35 123.5 1.7 2.4e-35 122.5 1.7 1.5 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 AJD67891.1 - 2.3e-29 101.6 0.4 5.5e-29 100.4 0.4 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 AJD67891.1 - 2.6e-28 99.0 0.0 5.3e-28 98.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain II RHS_repeat PF05593.14 AJD67893.1 - 3.7e-07 30.5 2.4 3.7e-07 30.5 2.4 11.8 9 2 4 13 13 13 5 RHS Repeat DUF4859 PF16151.5 AJD67893.1 - 2.7 7.9 6.8 1.5e+02 2.2 6.8 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4859) RHS_repeat PF05593.14 AJD67894.1 - 3.4e-15 56.2 42.7 0.0051 17.3 0.2 10.7 7 3 3 12 12 12 7 RHS Repeat N_BRCA1_IG PF16158.5 AJD67894.1 - 2.5e-13 50.6 0.4 1e-05 26.1 0.0 2.6 2 0 0 2 2 2 2 Ig-like domain from next to BRCA1 gene RHS PF03527.14 AJD67894.1 - 4.9e-07 29.4 3.3 3.3e-05 23.5 0.0 4.0 4 0 0 4 4 4 1 RHS protein HNH PF01844.23 AJD67894.1 - 0.00062 19.9 1.9 0.0011 19.1 1.9 1.4 1 0 0 1 1 1 1 HNH endonuclease DZR PF12773.7 AJD67894.1 - 0.2 11.7 0.5 0.38 10.8 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF4265 PF14085.6 AJD67895.1 - 7.9e-09 35.5 0.0 9.6e-09 35.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4265) Alpha_L_fucos PF01120.17 AJD67896.1 - 1.3e-33 116.9 0.0 2.2e-33 116.2 0.0 1.3 1 0 0 1 1 1 1 Alpha-L-fucosidase F5_F8_type_C PF00754.25 AJD67896.1 - 4.9e-22 78.4 0.0 2.1e-10 40.8 0.0 2.3 2 0 0 2 2 2 2 F5/8 type C domain GHL6 PF14871.6 AJD67896.1 - 0.0048 17.0 0.0 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 TAT_signal PF10518.9 AJD67896.1 - 0.061 13.2 5.8 0.17 11.8 5.8 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro2_C5 PF18565.1 AJD67898.1 - 2.2e-35 120.6 0.3 7.7e-35 118.8 0.0 2.1 2 0 0 2 2 2 1 Glycoside hydrolase family 2 C-terminal domain 5 Glyco_hydro_2_C PF02836.17 AJD67898.1 - 3.5e-30 105.2 0.0 1.8e-27 96.3 0.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 AJD67898.1 - 1.4e-17 64.1 0.0 3.7e-17 62.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 AJD67898.1 - 7.4e-17 62.0 0.0 1.4e-16 61.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF4982 PF16355.5 AJD67898.1 - 8.5e-16 57.6 0.2 2.3e-15 56.2 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4982) Invasin_D3 PF09134.10 AJD67898.1 - 0.0095 16.2 0.2 0.24 11.7 0.0 2.6 2 0 0 2 2 2 1 Invasin, domain 3 DUF2381 PF09544.10 AJD67898.1 - 0.043 13.4 2.6 0.044 13.3 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2381) Glyco_hydro_53 PF07745.13 AJD67899.1 - 1.4e-115 385.9 0.1 1.6e-115 385.7 0.1 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 Cellulase PF00150.18 AJD67899.1 - 0.00028 20.4 0.0 0.00054 19.5 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) LigB PF02900.18 AJD67899.1 - 0.012 14.7 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase DUF4434 PF14488.6 AJD67899.1 - 0.029 14.4 0.0 0.084 12.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4434) TonB_dep_Rec PF00593.24 AJD67900.1 - 7.5e-23 82.1 48.3 1.1e-19 71.7 48.3 2.7 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD67900.1 - 4.7e-13 49.6 0.4 1.8e-12 47.8 0.4 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain DUF5122 PF17164.4 AJD67900.1 - 0.071 13.4 1.6 0.28 11.5 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5122) beta-propeller DUF2083 PF09856.9 AJD67901.1 - 1.1e-61 207.3 0.0 1.9e-61 206.5 0.0 1.3 1 0 0 1 1 1 1 Predicted transcriptional regulator (DUF2083) Peptidase_M78 PF06114.13 AJD67901.1 - 6.1e-21 74.6 0.1 1.8e-20 73.1 0.0 1.8 2 0 0 2 2 2 1 IrrE N-terminal-like domain HTH_31 PF13560.6 AJD67901.1 - 5.4e-12 45.9 3.5 5.4e-12 45.9 3.5 3.2 3 1 1 4 4 3 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD67901.1 - 3.6e-09 36.6 1.8 7.4e-09 35.5 1.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix HTH_19 PF12844.7 AJD67901.1 - 7.9e-07 29.0 0.9 1.6e-06 28.0 0.3 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_25 PF13413.6 AJD67901.1 - 3.3e-05 23.6 0.5 0.00049 19.9 2.5 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 AJD67901.1 - 7.1e-05 22.7 2.8 7.1e-05 22.7 1.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AJD67901.1 - 0.00023 21.0 0.9 0.0039 17.1 0.2 2.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 AJD67901.1 - 0.0094 15.5 0.1 0.026 14.1 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 AJD67901.1 - 0.0099 15.4 0.5 0.041 13.4 0.5 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_26 PF13443.6 AJD67901.1 - 0.028 14.8 1.6 0.21 12.0 0.3 2.5 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MarR PF01047.22 AJD67901.1 - 0.089 12.7 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 MarR family NADH_B2 PF14813.6 AJD67901.1 - 0.16 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 NADH dehydrogenase 1 beta subcomplex subunit 2 TniQ PF06527.11 AJD67901.1 - 0.23 12.2 6.1 1.1 9.9 0.2 2.7 1 1 1 2 2 2 0 TniQ Aldedh PF00171.22 AJD67902.1 - 6.9e-143 476.5 1.4 8.3e-143 476.2 1.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 AJD67902.1 - 0.034 13.2 0.0 0.057 12.5 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) Acyl-CoA_dh_1 PF00441.24 AJD67903.1 - 8.7e-50 168.8 6.8 1.6e-49 168.0 6.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AJD67903.1 - 6.2e-31 107.4 0.3 1.4e-30 106.2 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AJD67903.1 - 4.6e-27 94.0 0.0 1.2e-26 92.8 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AJD67903.1 - 3.1e-22 79.3 5.3 3.1e-22 79.3 5.3 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 AJD67903.1 - 0.00013 21.8 0.5 0.00041 20.1 0.1 2.0 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal ECH_1 PF00378.20 AJD67904.1 - 3.2e-55 187.2 0.2 3.6e-55 187.0 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD67904.1 - 3.3e-32 112.3 0.8 2.4e-25 89.8 0.2 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD67905.1 - 2.6e-112 375.6 0.0 3e-112 375.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 AJD67905.1 - 5.4e-23 81.6 0.0 3.6e-20 72.3 0.0 2.7 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase HD PF01966.22 AJD67905.1 - 0.051 13.8 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 HD domain NAD_binding_2 PF03446.15 AJD67906.1 - 2.2e-51 174.1 1.9 3.2e-51 173.6 1.9 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AJD67906.1 - 1.1e-33 116.1 0.3 2.4e-33 115.0 0.3 1.6 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 AJD67906.1 - 9.3e-07 29.3 0.5 3.8e-06 27.4 0.2 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 AJD67906.1 - 0.00023 21.1 0.1 0.00044 20.2 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 AJD67906.1 - 0.0019 17.6 0.1 0.0031 16.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 AJD67906.1 - 0.01 15.5 0.2 0.02 14.5 0.0 1.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 AJD67906.1 - 0.028 14.0 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Cation_efflux PF01545.21 AJD67907.1 - 4.1e-47 160.5 11.7 5.1e-47 160.2 11.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 AJD67907.1 - 0.0097 16.0 0.1 0.019 15.1 0.1 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter NCE101 PF11654.8 AJD67907.1 - 0.12 12.1 0.1 1.7 8.4 0.1 2.5 2 0 0 2 2 2 0 Non-classical export protein 1 RseC_MucC PF04246.12 AJD67907.1 - 3.3 7.7 7.4 0.75 9.7 0.1 2.9 1 1 3 4 4 4 0 Positive regulator of sigma(E), RseC/MucC 3HCDH_N PF02737.18 AJD67908.1 - 1.2e-45 155.6 0.0 1.9e-45 154.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 AJD67908.1 - 1.5e-38 132.6 0.1 2.4e-38 131.9 0.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD67908.1 - 3.4e-26 92.5 0.0 5e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 AJD67908.1 - 1.6e-24 86.3 0.6 3.7e-16 59.5 0.0 3.7 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 AJD67908.1 - 2.3e-05 24.6 0.0 5.6e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 AJD67908.1 - 0.0084 15.8 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 AJD67908.1 - 0.025 13.9 0.7 0.054 12.8 0.7 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MORN PF02493.20 AJD67908.1 - 0.091 12.7 1.1 0.24 11.4 1.1 1.8 1 0 0 1 1 1 0 MORN repeat Sigma70_r4_2 PF08281.12 AJD67909.1 - 5.1e-18 64.5 1.2 7.5e-18 64.0 0.3 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD67909.1 - 1.5e-16 59.9 2.6 3.2e-16 58.8 2.6 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AJD67909.1 - 2.4e-10 39.8 0.2 4.9e-10 38.8 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AJD67909.1 - 2.4e-09 37.4 2.0 5.1e-09 36.3 2.0 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 AJD67909.1 - 0.00059 19.6 0.3 0.0023 17.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_16 PF12645.7 AJD67909.1 - 0.009 16.0 0.3 0.33 11.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 AJD67909.1 - 0.018 15.5 0.0 0.1 13.0 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain Phage_antitermQ PF06530.12 AJD67909.1 - 0.032 14.1 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Phage antitermination protein Q GerE PF00196.19 AJD67909.1 - 0.12 11.9 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RseA_N PF03872.13 AJD67910.1 - 4.5e-16 59.1 0.0 1.1e-15 57.8 0.0 1.7 1 0 0 1 1 1 1 Anti sigma-E protein RseA, N-terminal domain zf-HC2 PF13490.6 AJD67910.1 - 0.016 15.4 0.1 0.055 13.7 0.1 1.9 1 0 0 1 1 1 0 Putative zinc-finger Trypsin_2 PF13365.6 AJD67911.1 - 1.2e-37 130.1 1.3 1.2e-37 130.1 1.3 2.1 2 0 0 2 2 2 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 AJD67911.1 - 7e-24 84.0 0.8 2.4e-17 63.0 0.1 2.5 2 0 0 2 2 2 2 PDZ domain Trypsin PF00089.26 AJD67911.1 - 8.9e-17 61.6 0.0 1.6e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ PF00595.24 AJD67911.1 - 1.7e-12 47.5 0.6 3e-09 37.1 0.2 2.6 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 AJD67911.1 - 2.7e-08 33.5 0.2 2.7e-08 33.5 0.2 2.4 3 0 0 3 3 3 1 PDZ domain Peptidase_S46 PF10459.9 AJD67911.1 - 3.7e-07 29.2 1.1 0.0081 14.9 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.6 AJD67911.1 - 1.2e-06 28.3 2.4 0.00017 21.5 0.1 3.4 2 1 1 3 3 3 1 Tricorn protease PDZ domain Peptidase_S29 PF02907.15 AJD67911.1 - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Peptidase_S7 PF00949.21 AJD67911.1 - 0.13 12.0 0.2 0.28 11.0 0.2 1.5 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease GTP_EFTU PF00009.27 AJD67912.1 - 3.3e-52 176.9 0.1 4.9e-52 176.3 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 AJD67912.1 - 2.3e-51 172.5 2.3 3.8e-51 171.7 2.3 1.4 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 AJD67912.1 - 5.9e-19 67.9 0.0 1.4e-18 66.7 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AJD67912.1 - 9e-10 38.8 0.3 9e-10 38.8 0.3 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AJD67912.1 - 6.4e-05 22.8 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 AJD67912.1 - 0.00018 21.2 0.0 0.00034 20.2 0.0 1.4 1 0 0 1 1 1 1 Ras family EFG_II PF14492.6 AJD67912.1 - 0.00026 21.0 0.0 0.0011 19.1 0.0 2.1 2 1 0 2 2 2 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 AJD67912.1 - 0.0003 20.9 0.0 0.00067 19.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 AJD67912.1 - 0.025 14.6 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 AJD67912.1 - 0.082 12.3 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Peptidase_S24 PF00717.23 AJD67913.1 - 6.7e-22 77.2 0.1 1.1e-21 76.5 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 AJD67913.1 - 8.5e-07 28.8 0.0 0.0082 15.9 0.0 2.8 1 1 1 2 2 2 2 Signal peptidase, peptidase S26 DUF4845 PF16137.5 AJD67914.1 - 4.8e-27 94.6 0.0 5.9e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4845) N_methyl PF07963.12 AJD67914.1 - 0.0043 16.6 0.3 0.0058 16.1 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif COMMD1_N PF17221.3 AJD67914.1 - 0.062 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 COMMD1 N-terminal domain Ribonucleas_3_3 PF14622.6 AJD67915.1 - 6.1e-31 107.3 0.0 1.1e-30 106.4 0.0 1.4 2 0 0 2 2 2 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 AJD67915.1 - 1.2e-19 70.9 0.0 2.1e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.26 AJD67915.1 - 6.6e-11 42.8 0.0 1e-10 42.2 0.0 1.3 1 0 0 1 1 1 1 Double-stranded RNA binding motif DND1_DSRM PF14709.7 AJD67915.1 - 0.022 15.0 0.1 0.045 14.0 0.1 1.6 1 1 0 1 1 1 0 double strand RNA binding domain from DEAD END PROTEIN 1 MMR_HSR1 PF01926.23 AJD67916.1 - 1.5e-23 83.0 0.0 2.2e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase KH_2 PF07650.17 AJD67916.1 - 5.8e-20 70.9 0.2 1e-19 70.1 0.2 1.4 1 0 0 1 1 1 1 KH domain FeoB_N PF02421.18 AJD67916.1 - 2.2e-14 53.3 0.0 2.8e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 AJD67916.1 - 1.6e-10 40.8 0.1 1.2e-06 28.2 0.1 2.7 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 AJD67916.1 - 1.7e-09 37.9 0.2 0.00013 22.1 0.2 2.2 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.16 AJD67916.1 - 2e-09 37.1 0.0 5.7e-09 35.6 0.0 1.8 2 1 0 2 2 2 1 AIG1 family RsgA_GTPase PF03193.16 AJD67916.1 - 1.8e-08 34.5 0.1 4.1e-05 23.5 0.1 2.2 2 0 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 AJD67916.1 - 0.00035 20.3 0.0 0.002 17.9 0.0 2.1 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 AJD67916.1 - 0.0011 19.5 0.0 0.0019 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 AJD67916.1 - 0.0033 17.3 0.0 0.19 11.5 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 AJD67916.1 - 0.011 16.1 3.3 0.53 10.7 1.7 3.5 2 1 0 2 2 2 0 AAA ATPase domain MeaB PF03308.16 AJD67916.1 - 0.027 13.5 0.4 1.5 7.8 0.1 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF3453 PF11935.8 AJD67916.1 - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3453) Roc PF08477.13 AJD67916.1 - 0.17 12.1 0.2 0.84 9.9 0.2 2.1 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_29 PF13555.6 AJD67916.1 - 0.18 11.6 0.1 0.41 10.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RecO_N PF11967.8 AJD67917.1 - 1.2e-20 73.3 0.1 1.7e-20 72.7 0.1 1.3 1 0 0 1 1 1 1 Recombination protein O N terminal RecO_C PF02565.15 AJD67917.1 - 5.5e-17 62.0 0.4 9.9e-17 61.2 0.4 1.4 1 0 0 1 1 1 1 Recombination protein O C terminal RecO_N_2 PF13114.6 AJD67917.1 - 4.1e-05 23.2 0.0 6.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 RecO N terminal DUF2378 PF09536.10 AJD67917.1 - 0.025 14.4 3.5 0.78 9.6 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2378) Response_reg PF00072.24 AJD67918.1 - 3.8e-17 62.5 0.0 6.3e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 AJD67918.1 - 3.8e-05 23.9 3.1 3.8e-05 23.9 3.1 2.6 3 0 0 3 3 3 1 Hpt domain FleQ PF06490.11 AJD67918.1 - 0.015 15.6 0.0 0.036 14.4 0.0 1.6 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ HrpB1_HrpK PF09613.10 AJD67918.1 - 0.13 11.9 2.9 2 8.1 0.1 2.8 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) tRNA_U5-meth_tr PF05958.11 AJD67919.1 - 9.9e-24 84.0 0.0 3.5e-23 82.2 0.0 1.7 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.6 AJD67919.1 - 9.4e-13 48.2 0.0 1.7e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67919.1 - 1.2e-08 35.6 0.0 5.2e-08 33.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 AJD67919.1 - 1.1e-07 31.9 0.0 2e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 AJD67919.1 - 6.9e-07 29.0 0.0 1.6e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 AJD67919.1 - 7.9e-07 28.9 0.0 1.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 AJD67919.1 - 1.1e-06 27.9 0.0 1.7e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 AJD67919.1 - 2.2e-05 24.2 0.0 3.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 AJD67919.1 - 4.6e-05 24.0 0.1 0.00037 21.1 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain Met_10 PF02475.16 AJD67919.1 - 0.0003 20.6 0.0 0.00067 19.5 0.0 1.6 1 0 0 1 1 1 1 Met-10+ like-protein TRAM PF01938.20 AJD67919.1 - 0.00071 19.5 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 AJD67919.1 - 0.0009 19.1 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 AJD67919.1 - 0.0014 18.3 0.1 0.0086 15.8 0.1 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 AJD67919.1 - 0.0029 17.2 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 AJD67919.1 - 0.085 13.6 0.0 0.37 11.5 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain PrmA PF06325.13 AJD67919.1 - 0.099 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CYTH PF01928.21 AJD67920.1 - 6.6e-18 65.3 0.0 7.6e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 CYTH domain DSBA PF01323.20 AJD67921.1 - 7.2e-39 133.6 0.1 8.2e-39 133.4 0.1 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 AJD67921.1 - 3.5e-08 33.8 0.0 4.2e-07 30.3 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 AJD67921.1 - 0.00011 22.1 0.0 0.00081 19.4 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.6 AJD67921.1 - 0.029 14.8 0.0 0.051 14.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain NAD_binding_8 PF13450.6 AJD67922.1 - 2.6e-16 59.6 0.4 5.7e-16 58.5 0.4 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 AJD67922.1 - 8.1e-15 55.1 2.1 9.7e-08 31.7 0.1 3.0 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase HI0933_like PF03486.14 AJD67922.1 - 5.4e-06 25.4 0.4 8.2e-06 24.8 0.4 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 AJD67922.1 - 1.1e-05 24.7 0.3 1.6e-05 24.2 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 AJD67922.1 - 2e-05 24.0 0.1 2.6e-05 23.6 0.1 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD67922.1 - 5.7e-05 22.9 3.6 8.9e-05 22.2 2.1 1.9 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 AJD67922.1 - 0.00022 21.2 1.1 0.0043 17.1 1.1 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox PF00070.27 AJD67922.1 - 0.0012 19.4 0.0 0.0022 18.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 AJD67922.1 - 0.0021 17.7 0.2 0.086 12.5 0.1 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 AJD67922.1 - 0.004 16.8 0.2 0.021 14.4 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 AJD67922.1 - 0.011 15.6 0.1 0.018 15.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 AJD67922.1 - 0.012 14.8 0.7 0.061 12.4 1.0 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.12 AJD67922.1 - 0.019 14.1 1.8 0.03 13.4 1.8 1.4 1 1 0 1 1 1 0 Lycopene cyclase protein NAD_binding_2 PF03446.15 AJD67922.1 - 0.021 15.0 0.0 0.13 12.5 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.19 AJD67922.1 - 0.025 13.9 0.2 0.037 13.3 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 AJD67922.1 - 0.052 12.8 0.2 0.087 12.1 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 AJD67922.1 - 0.061 12.6 0.1 0.17 11.1 0.1 1.7 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 AJD67922.1 - 0.07 12.4 0.0 0.14 11.4 0.0 1.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 AJD67922.1 - 0.12 13.0 1.6 22 5.7 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 AJD67922.1 - 0.13 12.5 0.3 0.29 11.4 0.0 1.7 2 0 0 2 2 1 0 TrkA-N domain DPRP PF04244.13 AJD67923.1 - 7.4e-69 232.0 0.0 1.1e-68 231.4 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein Glyco_hydro_3 PF00933.21 AJD67924.1 - 3.5e-78 263.2 0.1 4.3e-78 262.9 0.1 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Pribosyltran PF00156.27 AJD67925.1 - 1.4e-21 76.6 0.0 1.6e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PNP_UDP_1 PF01048.20 AJD67926.1 - 3.6e-34 118.0 1.1 4.3e-34 117.8 1.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily CSD PF00313.22 AJD67927.1 - 2.5e-31 107.3 0.1 2.7e-31 107.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AJD67927.1 - 0.0012 18.5 0.6 0.0015 18.1 0.4 1.4 1 1 0 1 1 1 1 Ribonuclease B OB domain FAD_binding_3 PF01494.19 AJD67928.1 - 8.5e-26 91.0 0.2 1.1e-25 90.7 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 AJD67928.1 - 0.064 13.2 0.1 0.25 11.3 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 AJD67928.1 - 0.074 13.3 0.5 0.21 11.9 0.5 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain SE PF08491.10 AJD67928.1 - 0.16 11.0 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase TagF_N PF09867.9 AJD67928.1 - 0.4 10.7 3.6 5.4 7.0 0.0 2.9 3 0 0 3 3 3 0 TagF N-terminal domain, Type VI secretion system-associated Metallophos PF00149.28 AJD67929.1 - 7.3e-08 33.2 0.1 1.8e-07 31.9 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AJD67929.1 - 0.0006 20.1 2.8 0.0015 18.7 2.8 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DEAD_assoc PF08494.11 AJD67930.1 - 2.5e-48 164.4 1.1 7.5e-48 162.9 0.3 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 AJD67930.1 - 2.4e-24 86.0 0.0 4.2e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD67930.1 - 3.1e-12 46.8 0.0 7.1e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 AJD67930.1 - 5.9e-05 23.1 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_ligase_A_M PF01068.21 AJD67931.1 - 1.5e-33 116.2 0.0 2.1e-33 115.7 0.0 1.1 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 AJD67931.1 - 5.8e-18 65.8 0.0 9.1e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 AJD67931.1 - 1.4e-08 35.3 0.0 3.5e-08 33.9 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 AJD67931.1 - 0.03 14.7 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA ligase mRNA_cap_enzyme PF01331.19 AJD67931.1 - 0.18 11.6 0.0 8 6.2 0.0 2.6 2 1 0 2 2 2 0 mRNA capping enzyme, catalytic domain Lactamase_B PF00753.27 AJD67933.1 - 0.00085 19.4 4.0 0.091 12.8 0.2 3.0 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily RMMBL PF07521.12 AJD67933.1 - 0.049 13.6 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain zf-ribbon_3 PF13248.6 AJD67934.1 - 1.7e-05 24.0 0.8 3.2e-05 23.2 0.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 AJD67934.1 - 0.00089 18.9 1.0 0.0014 18.3 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 AJD67934.1 - 0.002 18.1 0.8 0.0029 17.6 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_17 PF17120.5 AJD67934.1 - 0.0098 15.5 1.2 0.014 15.0 1.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon, C4HC2 type TackOD1 PF18551.1 AJD67934.1 - 0.036 13.7 1.2 0.047 13.4 1.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 PADR1 PF08063.12 AJD67934.1 - 0.037 13.8 1.1 7.2 6.5 0.1 2.2 1 1 1 2 2 2 0 PADR1 (NUC008) domain zinc-ribbons_6 PF07191.12 AJD67934.1 - 0.044 13.8 0.5 0.063 13.3 0.5 1.2 1 0 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.9 AJD67934.1 - 0.073 13.2 5.8 0.13 12.4 5.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RING_4 PF14570.6 AJD67934.1 - 0.23 11.3 3.7 0.65 9.8 3.7 1.7 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-ACC PF17848.1 AJD67934.1 - 0.32 11.1 4.4 7.9 6.7 4.4 2.2 1 1 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain zf-C4H2 PF10146.9 AJD67934.1 - 0.6 10.4 3.2 0.87 9.8 3.2 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein zinc_ribbon_9 PF14369.6 AJD67934.1 - 0.71 10.2 4.4 1.8 8.9 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon zf_UBZ PF18439.1 AJD67934.1 - 0.72 9.5 4.2 2.7 7.7 0.2 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DiS_P_DiS PF06750.13 AJD67934.1 - 1.2 9.3 3.9 5.1 7.3 3.9 1.8 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Zn_Tnp_IS1595 PF12760.7 AJD67934.1 - 5.3 7.1 7.6 11 6.1 0.8 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 AJD67934.1 - 7.9 6.7 6.8 22 5.3 0.9 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Bactofilin PF04519.13 AJD67935.1 - 1.9e-22 79.3 6.5 2.5e-22 79.0 6.5 1.1 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Phage_spike PF18715.1 AJD67935.1 - 0.014 15.5 1.0 5.7 7.1 0.1 2.6 1 1 1 2 2 2 0 Phage spike trimer MinC_C PF03775.16 AJD67935.1 - 0.69 9.9 6.3 1.7 8.7 0.4 2.7 1 1 2 3 3 3 0 Septum formation inhibitor MinC, C-terminal domain GGDEF PF00990.21 AJD67936.1 - 9.7e-48 162.0 0.0 2.4e-47 160.7 0.0 1.7 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CHASE3 PF05227.13 AJD67936.1 - 5.2e-31 107.4 9.7 5.2e-31 107.4 9.7 2.4 2 0 0 2 2 2 1 CHASE3 domain GAF_2 PF13185.6 AJD67936.1 - 1.2e-07 32.2 0.4 4.1e-07 30.4 0.4 2.0 1 0 0 1 1 1 1 GAF domain Myc_target_1 PF15179.6 AJD67936.1 - 0.18 11.7 0.1 0.18 11.7 0.1 1.9 2 1 0 2 2 2 0 Myc target protein 1 PRTase_1 PF11202.8 AJD67936.1 - 0.78 8.9 3.0 0.58 9.4 0.7 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase (PRTase) DUF3365 PF11845.8 AJD67937.1 - 0.64 10.3 4.3 0.79 10.0 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3365) LAP2alpha PF11560.8 AJD67937.1 - 3.4 7.0 12.8 3.8 6.9 12.8 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 2 alpha Spore_coat_CotO PF14153.6 AJD67937.1 - 8.8 6.2 8.6 8.6 6.2 8.6 1.1 1 0 0 1 1 1 0 Spore coat protein CotO Presenilin PF01080.17 AJD67937.1 - 9.2 4.9 6.4 9.6 4.9 6.4 1.0 1 0 0 1 1 1 0 Presenilin DUF4820 PF16091.5 AJD67938.1 - 0.17 11.2 4.7 0.24 10.7 4.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4820) Thiolase_N PF00108.23 AJD67939.1 - 9.6e-88 293.9 5.6 1.2e-87 293.5 5.6 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AJD67939.1 - 2.6e-44 149.8 0.5 2.6e-44 149.8 0.5 2.4 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AJD67939.1 - 0.013 15.1 0.8 0.013 15.1 0.8 2.5 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain Peptidase_S8 PF00082.22 AJD67940.1 - 1.4e-35 123.1 0.1 2.6e-35 122.2 0.1 1.5 1 0 0 1 1 1 1 Subtilase family Autotransporter PF03797.19 AJD67940.1 - 1.3e-31 110.2 25.6 1.3e-31 110.2 25.6 2.8 2 1 0 2 2 2 1 Autotransporter beta-domain PATR PF12951.7 AJD67940.1 - 6.3e-07 29.4 7.2 6.3e-07 29.4 7.2 3.3 2 0 0 2 2 2 1 Passenger-associated-transport-repeat HopW1-1 PF15457.6 AJD67940.1 - 0.055 12.7 5.1 0.098 11.9 5.1 1.3 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA ELFV_dehydrog_N PF02812.18 AJD67941.1 - 1.1e-27 96.4 0.0 9.6e-27 93.4 0.0 2.1 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ELFV_dehydrog PF00208.21 AJD67941.1 - 8.5e-19 68.2 0.7 2.8e-13 50.2 0.1 2.2 1 1 1 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 AJD67941.1 - 7.8e-06 25.4 0.0 1.7e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 AJD67941.1 - 0.00023 21.4 0.0 0.0004 20.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 AJD67941.1 - 0.0094 16.2 0.1 0.02 15.1 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain AdoHcyase_NAD PF00670.21 AJD67941.1 - 0.014 15.5 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short_C2 PF13561.6 AJD67941.1 - 0.02 14.5 0.3 0.064 12.8 0.1 1.9 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD67941.1 - 0.021 14.3 0.4 0.087 12.3 0.1 2.2 2 1 0 2 2 2 0 short chain dehydrogenase AlaDh_PNT_C PF01262.21 AJD67941.1 - 0.091 12.0 0.2 0.18 11.1 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 AJD67941.1 - 0.097 12.2 0.0 0.24 11.0 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2OG-FeII_Oxy_3 PF13640.6 AJD67942.1 - 4.8e-14 53.0 0.0 9.1e-14 52.1 0.0 1.5 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily ANAPC3 PF12895.7 AJD67942.1 - 0.017 15.3 0.2 0.11 12.8 0.1 2.3 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.6 AJD67942.1 - 0.027 15.3 1.9 0.027 15.3 1.9 5.1 3 1 2 5 5 5 0 Tetratricopeptide repeat Sel1 PF08238.12 AJD67942.1 - 0.046 14.4 15.6 6.4 7.6 0.4 5.1 5 0 0 5 5 5 0 Sel1 repeat DUF45 PF01863.17 AJD67943.1 - 2.1e-12 47.5 2.2 2.8e-12 47.1 2.2 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 AJD67943.1 - 5.9e-05 23.2 4.2 5.9e-05 23.2 2.7 1.7 1 1 1 2 2 2 1 WLM domain PIN_5 PF08745.11 AJD67943.1 - 0.014 14.8 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 PINc domain ribonuclease Peptidase_M56 PF05569.11 AJD67943.1 - 0.015 14.5 2.1 0.073 12.3 2.1 1.9 1 1 0 1 1 1 0 BlaR1 peptidase M56 SprT-like PF10263.9 AJD67943.1 - 0.017 15.0 1.0 0.026 14.4 1.0 1.6 1 1 0 1 1 1 0 SprT-like family Reprolysin_4 PF13583.6 AJD67943.1 - 0.11 12.2 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF1328 PF07043.13 AJD67944.1 - 5.7e-11 42.5 25.3 1.4e-10 41.2 23.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1328) DUF1515 PF07439.11 AJD67944.1 - 0.86 9.7 4.5 0.99 9.5 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF2789 PF10982.8 AJD67945.1 - 1.6e-29 101.8 0.0 1.8e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2789) zf-dskA_traR PF01258.17 AJD67946.1 - 4.8e-13 48.8 1.3 7e-13 48.3 1.3 1.2 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 AJD67946.1 - 0.0016 18.4 0.8 0.0022 18.0 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.12 AJD67946.1 - 0.023 14.9 1.7 0.037 14.2 1.7 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ArfGap PF01412.18 AJD67946.1 - 0.067 13.3 0.2 0.086 12.9 0.2 1.2 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf MS_channel PF00924.18 AJD67947.1 - 1.7e-14 53.8 0.6 2.7e-14 53.2 0.6 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel HSP70 PF00012.20 AJD67949.1 - 3.1e-09 35.6 0.3 2.9e-06 25.8 0.1 3.2 3 1 0 3 3 3 2 Hsp70 protein MreB_Mbl PF06723.13 AJD67949.1 - 7.9e-07 28.2 3.4 1e-06 27.8 0.7 2.2 3 0 0 3 3 3 1 MreB/Mbl protein FtsA PF14450.6 AJD67949.1 - 0.015 15.7 0.4 0.24 11.8 0.1 2.6 2 0 0 2 2 2 0 Cell division protein FtsA MutL PF13941.6 AJD67949.1 - 0.019 13.6 0.4 0.038 12.6 0.1 1.6 2 0 0 2 2 2 0 MutL protein EutA PF06277.11 AJD67949.1 - 0.17 10.7 0.1 0.36 9.6 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutA FKBP_C PF00254.28 AJD67950.1 - 1.7e-12 47.4 0.0 2.9e-12 46.8 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Cation_efflux PF01545.21 AJD67951.1 - 3.2e-31 108.6 5.5 4e-31 108.3 5.5 1.1 1 0 0 1 1 1 1 Cation efflux family COX3 PF00510.18 AJD67951.1 - 0.053 13.3 0.3 0.082 12.7 0.3 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit III PhnA PF03831.14 AJD67952.1 - 3.5e-30 103.7 1.7 4.4e-30 103.4 1.7 1.1 1 0 0 1 1 1 1 PhnA domain PhnA_Zn_Ribbon PF08274.12 AJD67952.1 - 8.6e-12 44.8 0.9 1.4e-11 44.1 0.9 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 AJD67952.1 - 0.00053 19.8 0.2 0.00091 19.1 0.2 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0547 PF10571.9 AJD67952.1 - 0.012 15.7 7.2 0.1 12.7 7.2 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 AJD67952.1 - 0.031 13.8 0.3 0.081 12.4 0.3 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zf-C2H2_3 PF13878.6 AJD67952.1 - 0.11 12.3 1.4 5.8 6.8 0.0 2.5 2 1 1 3 3 3 0 zinc-finger of acetyl-transferase ESCO DUF4379 PF14311.6 AJD67952.1 - 0.12 12.8 0.6 0.12 12.8 0.6 2.0 1 1 0 2 2 2 0 Probable Zinc-ribbon domain DNA_RNApol_7kD PF03604.13 AJD67952.1 - 0.23 11.2 0.7 1.7 8.4 0.4 2.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RRN7 PF11781.8 AJD67952.1 - 0.61 9.8 3.8 7.3 6.4 3.8 2.1 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TFIIS_C PF01096.18 AJD67952.1 - 0.86 9.5 3.3 16 5.5 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 AJD67952.1 - 1.9 8.0 7.0 4.1 7.0 0.7 2.7 2 1 1 3 3 3 0 zinc-ribbon domain Oxidored_FMN PF00724.20 AJD67953.1 - 2.2e-79 267.2 0.0 2.5e-79 267.0 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family MFS_1 PF07690.16 AJD67954.1 - 9.6e-40 136.6 58.6 1.9e-32 112.6 33.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD67954.1 - 1.9e-13 50.1 9.5 1.9e-13 50.1 9.5 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_4 PF06779.14 AJD67954.1 - 6.8e-08 32.2 47.0 9.2e-08 31.8 47.0 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 AJD67954.1 - 2.5 6.3 10.5 4.1 5.6 1.9 2.4 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF3072 PF11272.8 AJD67955.1 - 0.045 13.7 0.2 0.06 13.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3072) DUF2383 PF09537.10 AJD67956.1 - 1.4e-28 99.4 0.1 2.2e-28 98.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) LigT_PEase PF02834.16 AJD67957.1 - 2.1e-15 56.6 0.0 6.3e-10 39.1 0.0 2.3 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 AJD67957.1 - 1.4e-12 47.8 0.0 1.8e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily HD PF01966.22 AJD67958.1 - 0.039 14.2 0.1 0.057 13.6 0.1 1.4 1 0 0 1 1 1 0 HD domain Oxidored-like PF09791.9 AJD67959.1 - 1.6e-13 50.0 2.7 2.3e-13 49.6 2.7 1.2 1 0 0 1 1 1 1 Oxidoreductase-like protein, N-terminal VirJ PF06057.11 AJD67960.1 - 3.8e-84 281.4 0.0 7e-84 280.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial virulence protein (VirJ) Hydrolase_4 PF12146.8 AJD67960.1 - 0.00035 19.9 0.2 0.0069 15.7 0.0 3.0 2 2 0 3 3 3 1 Serine aminopeptidase, S33 Cutinase PF01083.22 AJD67960.1 - 0.014 15.4 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Cutinase Abhydrolase_1 PF00561.20 AJD67960.1 - 0.019 14.6 0.4 0.046 13.3 0.0 1.8 2 0 0 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 AJD67960.1 - 0.021 14.7 0.0 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.13 AJD67960.1 - 0.034 14.0 0.1 2.9 7.7 0.0 2.4 2 0 0 2 2 2 0 alpha/beta hydrolase fold UPF0565 PF10561.9 AJD67960.1 - 0.064 12.5 0.0 0.088 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0565 DUF3089 PF11288.8 AJD67960.1 - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) Palm_thioest PF02089.15 AJD67960.1 - 0.23 11.3 0.0 0.34 10.7 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Abhydrolase_6 PF12697.7 AJD67960.1 - 1 9.9 16.7 0.11 13.1 2.2 2.9 2 2 1 3 3 3 0 Alpha/beta hydrolase family DUF2156 PF09924.9 AJD67961.1 - 1.9e-94 316.1 0.4 2.9e-94 315.4 0.4 1.2 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) LPG_synthase_TM PF03706.13 AJD67961.1 - 4.2e-08 33.1 41.8 4.2e-08 33.1 41.8 3.8 1 1 2 4 4 4 1 Lysylphosphatidylglycerol synthase TM region DUF998 PF06197.13 AJD67963.1 - 4.8e-10 39.3 34.3 6.4e-10 38.9 34.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF3043 PF11241.8 AJD67963.1 - 0.84 9.6 3.2 17 5.4 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) Ribonuc_L-PSP PF01042.21 AJD67964.1 - 2.1e-23 82.6 0.0 2.2e-23 82.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP CMAS PF02353.20 AJD67965.1 - 2.1e-36 125.7 0.0 2.7e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 AJD67965.1 - 1.6e-15 57.5 0.0 3.3e-15 56.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD67965.1 - 1.9e-14 54.1 0.0 3.1e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67965.1 - 6.5e-14 52.1 0.0 1e-13 51.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67965.1 - 7.8e-12 45.8 0.0 1.9e-11 44.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67965.1 - 3.3e-09 36.7 0.0 4.3e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AJD67965.1 - 3.2e-07 30.0 0.0 5.1e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 AJD67965.1 - 4e-06 26.4 0.0 6.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltr_RsmB-F PF01189.17 AJD67965.1 - 0.00058 19.6 0.0 0.00096 18.8 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PCMT PF01135.19 AJD67965.1 - 0.005 16.6 0.0 0.0074 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 AJD67965.1 - 0.0076 15.9 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DUF938 PF06080.12 AJD67965.1 - 0.011 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) tRNA_U5-meth_tr PF05958.11 AJD67965.1 - 0.011 14.7 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TehB PF03848.14 AJD67965.1 - 0.02 14.3 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_24 PF13578.6 AJD67965.1 - 0.1 13.6 0.0 0.33 12.0 0.0 1.8 2 0 0 2 2 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 AJD67965.1 - 0.15 11.4 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 AJD67965.1 - 0.24 10.5 0.0 0.36 9.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF1295 PF06966.12 AJD67966.1 - 2.5e-78 262.9 0.7 2.9e-78 262.6 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) Steroid_dh PF02544.16 AJD67966.1 - 7.4e-07 29.3 0.8 2.5e-06 27.6 0.1 1.9 1 1 1 2 2 2 1 3-oxo-5-alpha-steroid 4-dehydrogenase ICMT PF04140.14 AJD67966.1 - 3e-05 24.4 0.9 8.5e-05 22.9 0.1 2.1 2 1 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 AJD67966.1 - 0.00047 20.5 1.1 0.0024 18.3 0.8 2.3 2 1 0 2 2 2 1 Phospholipid methyltransferase Cytochrom_B_C PF00032.17 AJD67966.1 - 0.042 14.1 1.8 0.2 11.9 0.0 2.5 3 0 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD Phage_holin_3_6 PF07332.11 AJD67966.1 - 0.044 13.8 0.9 0.044 13.8 0.9 3.3 3 1 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2878 PF11086.8 AJD67967.1 - 4.6e-38 130.9 25.4 5.2e-38 130.7 25.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2878) CMAS PF02353.20 AJD67968.1 - 5.4e-77 258.8 0.0 6.8e-77 258.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 AJD67968.1 - 1.8e-10 41.4 0.2 4.9e-10 40.0 0.1 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67968.1 - 2.8e-09 37.0 0.0 5.2e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD67968.1 - 3.5e-07 30.9 0.0 7.3e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD67968.1 - 5.5e-07 30.2 0.0 1.1e-06 29.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67968.1 - 1.4e-05 25.0 0.0 3.6e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 AJD67968.1 - 0.0047 16.5 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain ADH_zinc_N PF00107.26 AJD67968.1 - 0.019 15.0 0.1 0.27 11.2 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_24 PF13578.6 AJD67968.1 - 0.03 15.4 0.2 0.5 11.4 0.1 2.9 2 1 1 3 3 3 0 Methyltransferase domain Methyltransf_16 PF10294.9 AJD67968.1 - 0.077 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_18 PF12847.7 AJD67968.1 - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.10 AJD67968.1 - 0.2 11.3 0.1 0.33 10.6 0.1 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DUF1365 PF07103.11 AJD67969.1 - 2.6e-75 253.2 1.2 3e-75 253.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1365) Amino_oxidase PF01593.24 AJD67970.1 - 2e-17 63.6 1.1 4.8e-17 62.4 0.0 2.0 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 AJD67970.1 - 4e-15 55.8 0.1 1.3e-14 54.1 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AJD67970.1 - 1.1e-07 31.9 0.1 2.4e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 AJD67970.1 - 0.00012 22.2 0.9 0.7 9.9 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 AJD67970.1 - 0.0042 16.4 0.0 0.011 15.0 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD67970.1 - 0.0059 15.7 0.1 0.0096 15.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 AJD67970.1 - 0.082 13.5 0.2 0.25 11.9 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD67970.1 - 0.11 11.7 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 AJD67970.1 - 0.28 10.2 0.1 0.4 9.7 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FA_desaturase PF00487.24 AJD67971.1 - 1.9e-26 93.5 32.3 1.9e-26 93.5 32.3 1.6 1 1 1 2 2 2 2 Fatty acid desaturase TctB PF07331.11 AJD67971.1 - 0.056 13.7 10.0 0.26 11.6 0.6 2.7 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Rer1 PF03248.13 AJD67971.1 - 0.3 10.8 2.2 0.55 9.9 1.9 1.6 1 1 0 1 1 1 0 Rer1 family RskA PF10099.9 AJD67972.1 - 1.3e-25 90.8 18.4 1.8e-25 90.2 18.4 1.2 1 0 0 1 1 1 1 Anti-sigma-K factor rskA Sigma70_r2 PF04542.14 AJD67973.1 - 1.2e-15 57.0 0.1 2.3e-15 56.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 AJD67973.1 - 1.7e-12 46.8 0.0 3.1e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD67973.1 - 1.4e-08 34.1 0.0 3.3e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AJD67973.1 - 0.00043 20.2 0.2 0.0013 18.6 0.2 1.7 1 1 0 1 1 1 1 ECF sigma factor DUF4345 PF14248.6 AJD67974.1 - 7.6e-05 22.6 14.2 8.3e-05 22.5 14.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) DUF4267 PF14087.6 AJD67974.1 - 0.1 12.7 2.9 0.13 12.4 2.9 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4267) Fer4_21 PF14697.6 AJD67976.1 - 4.6e-15 55.5 14.6 4.6e-15 55.5 14.6 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain FeS PF04060.13 AJD67976.1 - 5.7e-14 51.5 3.8 5.7e-14 51.5 3.8 2.6 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.27 AJD67976.1 - 4.1e-09 35.9 20.9 3.2e-06 26.7 6.3 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 AJD67976.1 - 2e-08 34.2 33.6 5.2e-07 29.7 13.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 AJD67976.1 - 3.2e-07 30.9 19.6 0.003 18.1 3.4 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AJD67976.1 - 7e-06 25.8 21.7 0.0003 20.7 2.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 AJD67976.1 - 4.9e-05 24.2 23.0 0.00014 22.7 2.1 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 AJD67976.1 - 0.00026 21.0 14.9 0.00026 21.0 14.9 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 AJD67976.1 - 0.00059 19.8 30.0 0.0014 18.6 4.9 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 AJD67976.1 - 0.0043 17.9 4.7 0.0043 17.9 4.7 4.1 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_22 PF17179.4 AJD67976.1 - 0.023 15.5 0.3 0.023 15.5 0.3 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 AJD67976.1 - 0.081 13.5 2.2 0.081 13.5 2.2 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.6 AJD67976.1 - 0.096 13.2 23.7 0.28 11.8 3.5 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 AJD67976.1 - 0.19 12.2 21.9 0.23 12.0 2.5 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain HAD PF12710.7 AJD67977.1 - 9.7e-27 94.6 0.2 1.1e-26 94.4 0.2 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD67977.1 - 0.06 13.6 0.0 0.34 11.2 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase tRNA-synt_1g PF09334.11 AJD67978.1 - 4e-150 499.9 0.0 4.9e-150 499.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 AJD67978.1 - 2.7e-21 75.5 0.0 4.8e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 AJD67978.1 - 6.8e-09 34.5 0.0 9.5e-07 27.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 AJD67978.1 - 1.1e-05 24.9 0.0 0.0011 18.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 AJD67978.1 - 0.0032 16.4 0.0 0.052 12.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF2147 PF09917.9 AJD67979.1 - 2.3e-33 115.2 1.0 2.7e-33 115.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2147) ABC2_membrane_2 PF12679.7 AJD67980.1 - 6.7e-13 48.6 40.5 8.6e-12 44.9 20.4 2.2 1 1 1 2 2 2 2 ABC-2 family transporter protein Peptidase_M1 PF01433.20 AJD67980.1 - 7.6e-12 45.3 0.1 1.2e-11 44.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain ABC2_membrane_5 PF13346.6 AJD67980.1 - 7.1e-06 25.7 17.9 0.0003 20.4 4.3 2.5 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 AJD67980.1 - 2.5e-05 24.3 30.2 0.00019 21.5 9.5 2.8 3 0 0 3 3 3 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 AJD67980.1 - 0.19 10.8 39.5 0.012 14.8 16.1 2.9 2 1 1 3 3 3 0 ABC-2 family transporter protein DUF4129 PF13559.6 AJD67980.1 - 3.8 7.8 6.5 0.4 11.0 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) ABC_tran PF00005.27 AJD67981.1 - 2e-28 99.6 0.0 4e-28 98.7 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 AJD67981.1 - 3.3e-13 50.1 0.1 1.8e-06 28.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 AJD67981.1 - 3.9e-05 23.5 0.0 0.0001 22.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 AJD67981.1 - 6.2e-05 22.5 0.0 0.068 12.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AJD67981.1 - 0.00017 22.2 0.0 0.00032 21.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD67981.1 - 0.00019 21.9 0.1 0.00074 19.9 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 AJD67981.1 - 0.00074 19.7 0.0 0.0031 17.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AJD67981.1 - 0.0008 19.2 0.0 0.98 9.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 AJD67981.1 - 0.0017 18.1 0.4 0.0054 16.5 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD67981.1 - 0.0029 17.9 0.1 0.031 14.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 AJD67981.1 - 0.028 14.2 0.0 4.5 7.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.29 AJD67981.1 - 0.049 14.1 0.0 0.34 11.3 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KdpD PF02702.17 AJD67981.1 - 0.051 13.1 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain RsgA_GTPase PF03193.16 AJD67981.1 - 0.056 13.3 0.2 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_24 PF13479.6 AJD67981.1 - 0.11 12.2 0.0 2.2 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 AJD67981.1 - 0.18 11.9 0.0 0.68 10.0 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase Glyoxalase PF00903.25 AJD67982.1 - 6.2e-22 78.2 0.0 6.9e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 AJD67982.1 - 1.5e-12 47.7 0.0 1.8e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 AJD67982.1 - 1.2e-08 35.3 0.1 1.4e-08 35.1 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 AJD67982.1 - 7.7e-07 29.9 0.1 9.1e-07 29.6 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 AJD67982.1 - 0.00072 19.5 0.0 0.0031 17.4 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain AA_permease PF00324.21 AJD67983.1 - 3.6e-108 362.2 39.9 4.4e-108 361.9 39.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 AJD67983.1 - 5.4e-39 134.2 40.6 6.4e-39 134.0 40.6 1.0 1 0 0 1 1 1 1 Amino acid permease S-methyl_trans PF02574.16 AJD67984.1 - 8.7e-80 268.4 0.2 9.9e-80 268.2 0.2 1.0 1 0 0 1 1 1 1 Homocysteine S-methyltransferase DUF885 PF05960.11 AJD67985.1 - 5.5e-167 557.6 1.7 8.3e-167 557.0 1.7 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) Vut_1 PF02592.15 AJD67986.1 - 1.7e-41 142.0 13.0 1.7e-41 142.0 13.0 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter DUF502 PF04367.13 AJD67987.1 - 4.1e-27 94.2 0.1 8e-27 93.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Alginate_exp PF13372.6 AJD67989.1 - 5.5e-36 124.2 12.4 6.9e-36 123.8 12.4 1.1 1 0 0 1 1 1 1 Alginate export PadR PF03551.14 AJD67990.1 - 1.5e-19 69.7 0.0 1.9e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 AJD67990.1 - 0.0018 18.1 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 AJD67990.1 - 0.011 15.9 0.0 0.033 14.4 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.6 AJD67990.1 - 0.082 13.4 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF505 PF04458.12 AJD67990.1 - 0.13 10.6 0.0 0.15 10.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Sensor PF13796.6 AJD67991.1 - 3.6e-40 137.7 29.5 3.6e-40 137.7 29.5 1.9 1 1 1 2 2 2 2 Putative sensor DUF1700 PF08006.11 AJD67991.1 - 0.0066 16.0 21.3 0.009 15.6 0.0 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF1700) PHB_depo_C PF06850.11 AJD67992.1 - 1.5e-100 334.8 0.0 2e-100 334.4 0.0 1.2 1 0 0 1 1 1 1 PHB de-polymerase C-terminus Smr PF01713.21 AJD67992.1 - 0.067 13.5 0.1 2.4 8.6 0.0 2.4 2 0 0 2 2 2 0 Smr domain Methyltransf_12 PF08242.12 AJD67993.1 - 7.1e-07 29.9 0.0 1.3e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD67993.1 - 7.3e-07 29.2 0.0 1.3e-06 28.4 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD67993.1 - 2.6e-05 24.9 0.0 5.2e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD67993.1 - 0.0019 18.0 0.0 0.0042 16.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD67993.1 - 0.0035 18.0 0.0 0.0059 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 AJD67993.1 - 0.039 12.5 0.0 0.052 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 AJD67993.1 - 0.079 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain UPF0093 PF03653.13 AJD67994.1 - 7.1e-41 139.8 5.3 8e-41 139.7 5.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0093) CopD PF05425.13 AJD67994.1 - 0.0034 17.8 7.2 0.0034 17.8 7.2 2.0 1 1 1 2 2 2 1 Copper resistance protein D TPR_6 PF13174.6 AJD67995.1 - 1.5 9.6 4.9 2.1 9.1 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_19 PF14559.6 AJD67996.1 - 1.7e-13 50.8 13.7 4.5e-10 39.9 2.7 2.7 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 AJD67996.1 - 4.5e-07 30.1 13.4 0.21 12.3 0.1 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD67996.1 - 7.5e-07 29.5 23.9 0.027 15.3 3.6 5.0 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 AJD67996.1 - 9.9e-07 29.3 21.3 0.0036 17.9 1.3 3.5 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 AJD67996.1 - 0.00055 19.8 9.9 0.0029 17.5 0.8 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD67996.1 - 0.00083 19.5 0.9 0.29 11.4 0.1 2.4 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_2 PF07719.17 AJD67996.1 - 0.00094 19.1 10.7 0.017 15.2 0.6 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 AJD67996.1 - 0.0022 18.0 1.9 2.7 8.4 0.1 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 AJD67996.1 - 0.0024 18.1 16.7 0.055 13.8 2.4 3.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 AJD67996.1 - 0.012 15.2 3.7 0.089 12.5 0.6 3.2 3 0 0 3 3 3 0 TPR repeat NARP1 PF12569.8 AJD67996.1 - 0.019 13.9 0.3 0.91 8.4 0.5 2.2 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 AJD67996.1 - 0.02 15.5 3.0 0.02 15.5 3.0 5.3 5 1 0 5 5 4 0 Tetratricopeptide repeat DUF4131 PF13567.6 AJD67996.1 - 0.025 14.3 0.4 0.047 13.3 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SNAP PF14938.6 AJD67996.1 - 0.052 13.0 0.3 4.3 6.7 0.2 2.2 2 0 0 2 2 2 0 Soluble NSF attachment protein, SNAP PaREP1 PF05942.11 AJD67996.1 - 0.06 13.3 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family TPR_1 PF00515.28 AJD67996.1 - 0.068 13.0 3.4 0.37 10.7 0.4 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_17 PF13431.6 AJD67996.1 - 0.27 11.7 4.2 5.1 7.7 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 AJD67996.1 - 3 7.8 10.5 1.5 8.8 2.5 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat ACCA PF03255.14 AJD67997.1 - 4.2e-63 211.5 0.0 6.1e-63 211.0 0.0 1.2 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 AJD67997.1 - 1.7e-19 69.9 0.0 2e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 AJD67997.1 - 0.032 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) DNA_pol3_alpha PF07733.12 AJD67998.1 - 9.6e-100 333.5 0.0 1.8e-99 332.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 AJD67998.1 - 3.2e-59 199.0 0.0 1.2e-58 197.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial DNA polymerase III alpha subunit finger domain HHH_6 PF14579.6 AJD67998.1 - 5.4e-27 93.9 0.0 1.7e-26 92.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PHP PF02811.19 AJD67998.1 - 5e-25 88.7 0.0 1.1e-24 87.6 0.0 1.6 1 0 0 1 1 1 1 PHP domain tRNA_anti-codon PF01336.25 AJD67998.1 - 1.8e-08 34.3 0.1 3.6e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 AJD67998.1 - 0.0073 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RNase_HII PF01351.18 AJD67999.1 - 5e-37 127.7 0.0 5.9e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII LpxB PF02684.15 AJD68000.1 - 6.3e-112 374.1 0.0 7.6e-112 373.9 0.0 1.0 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase Acetyltransf_11 PF13720.6 AJD68001.1 - 4.3e-25 88.0 0.0 6.3e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep PF00132.24 AJD68001.1 - 2.2e-22 77.8 14.3 4.4e-06 26.2 0.4 5.8 2 2 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD68001.1 - 0.14 11.9 10.3 1.5 8.7 0.9 4.6 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase FabA PF07977.13 AJD68002.1 - 1.5e-39 134.8 0.1 1.7e-39 134.6 0.1 1.0 1 0 0 1 1 1 1 FabA-like domain 4HBT PF03061.22 AJD68002.1 - 0.041 14.2 0.0 0.077 13.4 0.0 1.6 1 1 0 1 1 1 0 Thioesterase superfamily MaoC_dehydratas PF01575.19 AJD68002.1 - 0.041 13.4 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 MaoC like domain LpxD PF04613.14 AJD68003.1 - 7.1e-24 83.4 1.2 1.4e-23 82.5 1.2 1.5 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep PF00132.24 AJD68003.1 - 3.8e-22 77.1 33.7 8e-06 25.4 0.7 6.1 5 1 1 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD68003.1 - 2.2e-11 43.3 32.1 0.0002 21.1 5.1 5.8 6 0 0 6 6 6 5 Hexapeptide repeat of succinyl-transferase DUF2171 PF09939.9 AJD68003.1 - 0.068 13.5 0.3 0.21 11.9 0.3 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) DUF2269 PF10027.9 AJD68004.1 - 0.048 13.7 0.0 0.058 13.5 0.0 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) Coiled PF05710.12 AJD68004.1 - 0.12 13.2 0.0 0.13 13.1 0.0 1.1 1 0 0 1 1 1 0 Coiled coil Bac_surface_Ag PF01103.23 AJD68005.1 - 1.7e-91 307.1 15.8 3.5e-91 306.1 15.8 1.6 1 0 0 1 1 1 1 Surface antigen POTRA PF07244.15 AJD68005.1 - 1.9e-63 211.0 9.3 1.9e-15 57.2 0.2 5.4 5 0 0 5 5 5 5 Surface antigen variable number repeat POTRA_2 PF08479.11 AJD68005.1 - 6.2e-10 38.8 1.2 1.9e-06 27.6 0.0 5.2 5 0 0 5 5 5 1 POTRA domain, ShlB-type POTRA_1 PF08478.10 AJD68005.1 - 2.2e-07 31.1 0.5 0.37 11.1 0.0 5.2 5 0 0 5 5 5 2 POTRA domain, FtsQ-type OEP PF02321.18 AJD68005.1 - 0.017 14.9 0.6 0.056 13.2 0.6 1.8 1 0 0 1 1 1 0 Outer membrane efflux protein YqfD PF06898.11 AJD68005.1 - 0.095 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Peptidase_M50 PF02163.22 AJD68006.1 - 4.2e-78 262.1 0.0 5e-78 261.8 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 AJD68006.1 - 4.6e-16 58.4 3.0 2.2e-08 33.8 0.8 2.7 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 AJD68006.1 - 2.2e-12 47.1 0.1 5.7e-06 26.6 0.1 2.4 2 0 0 2 2 2 2 PDZ domain PDZ_2 PF13180.6 AJD68006.1 - 7e-10 39.1 0.0 2.2e-05 24.7 0.0 2.3 2 0 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 AJD68006.1 - 0.00031 20.7 0.1 0.83 9.7 0.0 2.7 3 0 0 3 3 3 2 Tricorn protease PDZ domain Peptidase_M50B PF13398.6 AJD68006.1 - 0.054 13.1 5.2 0.65 9.6 1.8 2.9 2 1 0 2 2 2 0 Peptidase M50B-like PK_C PF02887.16 AJD68006.1 - 0.13 12.5 0.0 0.72 10.1 0.0 2.1 1 1 1 2 2 2 0 Pyruvate kinase, alpha/beta domain DXP_reductoisom PF02670.16 AJD68007.1 - 2.8e-40 138.0 0.7 5.2e-40 137.1 0.7 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXP_redisom_C PF08436.12 AJD68007.1 - 1.4e-39 134.1 0.0 2.6e-39 133.3 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DXPR_C PF13288.6 AJD68007.1 - 8.3e-38 129.2 0.0 1.3e-37 128.5 0.0 1.3 1 0 0 1 1 1 1 DXP reductoisomerase C-terminal domain Semialdhyde_dh PF01118.24 AJD68007.1 - 0.0079 16.6 0.1 0.026 15.0 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 AJD68007.1 - 0.036 14.3 0.4 0.088 13.1 0.4 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CTP_transf_1 PF01148.20 AJD68008.1 - 3.7e-69 233.4 14.2 4.2e-69 233.3 14.2 1.0 1 0 0 1 1 1 1 Cytidylyltransferase family DUF92 PF01940.16 AJD68008.1 - 0.031 13.7 0.5 0.031 13.7 0.5 2.7 2 1 1 3 3 3 0 Integral membrane protein DUF92 Prenyltransf PF01255.19 AJD68009.1 - 8.3e-75 251.2 0.0 9.4e-75 251.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase RRF PF01765.19 AJD68010.1 - 4e-62 208.9 1.0 5.4e-62 208.5 1.0 1.2 1 0 0 1 1 1 1 Ribosome recycling factor TBCA PF02970.16 AJD68010.1 - 0.12 12.8 5.7 1.2 9.6 3.9 2.5 2 1 0 2 2 2 0 Tubulin binding cofactor A DUF4168 PF13767.6 AJD68010.1 - 0.74 11.0 4.8 2.8 9.2 2.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4168) XhlA PF10779.9 AJD68010.1 - 0.98 9.7 4.2 2.6 8.3 2.1 2.3 2 0 0 2 2 2 0 Haemolysin XhlA DUF1542 PF07564.11 AJD68010.1 - 1.6 8.9 12.7 0.23 11.6 7.9 2.0 2 1 1 3 3 3 0 Domain of Unknown Function (DUF1542) AA_kinase PF00696.28 AJD68011.1 - 2.6e-29 102.5 1.6 3.1e-29 102.3 1.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family HDOD PF08668.12 AJD68012.1 - 1.5e-57 194.3 0.1 3.5e-57 193.1 0.1 1.6 1 0 0 1 1 1 1 HDOD domain GGDEF PF00990.21 AJD68012.1 - 7.8e-43 146.0 0.0 1.8e-42 144.9 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain EF_TS PF00889.19 AJD68013.1 - 3.9e-65 219.4 4.9 5.1e-65 219.0 4.9 1.1 1 0 0 1 1 1 1 Elongation factor TS DUF2313 PF10076.9 AJD68013.1 - 0.011 15.6 0.1 0.13 12.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2313) Ribosomal_S2 PF00318.20 AJD68014.1 - 1.3e-92 308.9 0.0 1.5e-92 308.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S2 Peripla_BP_1 PF00532.21 AJD68014.1 - 0.036 13.5 0.1 0.15 11.5 0.1 1.8 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family PucR PF07905.11 AJD68014.1 - 0.054 13.8 0.0 4.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family PapD_N PF00345.20 AJD68015.1 - 7.6e-09 35.5 0.0 1.9e-08 34.2 0.0 1.7 2 1 0 2 2 2 1 Pili and flagellar-assembly chaperone, PapD N-terminal domain SCPU PF05229.15 AJD68017.1 - 4e-52 176.3 18.8 8.1e-34 117.0 6.4 2.2 2 0 0 2 2 2 2 Spore Coat Protein U domain Usher PF00577.20 AJD68018.1 - 3.4e-30 105.4 0.1 1.5e-16 60.4 0.0 2.1 2 0 0 2 2 2 2 Outer membrane usher protein PapC_C PF13953.6 AJD68018.1 - 2.6e-12 46.4 0.1 1.1e-11 44.4 0.0 2.2 2 0 0 2 2 2 1 PapC C-terminal domain PapD_N PF00345.20 AJD68019.1 - 8.8e-25 87.0 0.0 4.6e-24 84.7 0.0 1.8 2 0 0 2 2 2 1 Pili and flagellar-assembly chaperone, PapD N-terminal domain Big_1 PF02369.16 AJD68019.1 - 0.029 14.4 0.0 0.17 11.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) CARDB PF07705.11 AJD68019.1 - 0.12 12.6 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 CARDB SCPU PF05229.15 AJD68020.1 - 1.6e-34 119.3 19.0 1.9e-34 119.1 19.0 1.0 1 0 0 1 1 1 1 Spore Coat Protein U domain Fimbrial PF00419.20 AJD68020.1 - 0.0046 17.2 11.5 0.0055 17.0 11.5 1.1 1 0 0 1 1 1 1 Fimbrial protein DLL_N PF12413.8 AJD68020.1 - 0.024 15.9 1.7 0.026 15.8 0.4 1.7 2 0 0 2 2 2 0 Homeobox protein distal-less-like N terminal Peptidase_M24 PF00557.24 AJD68021.1 - 4e-56 190.0 1.5 4.6e-56 189.8 1.5 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 GlnD_UR_UTase PF08335.11 AJD68022.1 - 3.7e-30 104.9 0.5 3.7e-30 104.9 0.5 2.8 3 0 0 3 3 3 1 GlnD PII-uridylyltransferase HD PF01966.22 AJD68022.1 - 8e-14 51.9 0.5 2.3e-13 50.4 0.2 2.0 2 0 0 2 2 2 1 HD domain ACT PF01842.25 AJD68022.1 - 9.1e-09 35.0 0.1 6.3e-05 22.7 0.0 2.9 2 0 0 2 2 2 2 ACT domain NTP_transf_2 PF01909.23 AJD68022.1 - 5.1e-05 23.5 0.0 0.00013 22.2 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain ACT_6 PF13740.6 AJD68022.1 - 0.00043 20.2 0.0 0.029 14.4 0.0 2.8 2 0 0 2 2 2 1 ACT domain DUF294 PF03445.13 AJD68022.1 - 0.00051 19.9 0.0 0.0014 18.4 0.0 1.7 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 ACT_4 PF13291.6 AJD68022.1 - 0.0026 18.3 0.0 0.036 14.7 0.0 2.3 2 0 0 2 2 2 1 ACT domain THDPS_N_2 PF14805.6 AJD68023.1 - 3.4e-22 78.4 0.0 7e-22 77.4 0.0 1.6 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 AJD68023.1 - 7.9e-13 47.6 11.3 2e-07 30.4 2.1 3.1 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD68023.1 - 8.5e-11 41.4 0.8 8.5e-11 41.4 0.8 2.7 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase HC2 PF07382.11 AJD68023.1 - 0.25 11.4 34.1 0.43 10.6 34.1 1.3 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 ArsC PF03960.15 AJD68024.1 - 5.3e-14 52.0 0.0 5.5e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 AJD68024.1 - 1.1e-05 25.6 0.0 1.6e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Peptidase_M20 PF01546.28 AJD68025.1 - 3.2e-41 141.3 0.0 3.9e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AJD68025.1 - 6e-26 90.5 0.0 9.9e-26 89.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain EccE PF11203.8 AJD68025.1 - 0.016 15.5 1.6 0.63 10.4 0.1 2.6 1 1 1 2 2 2 0 Putative type VII ESX secretion system translocon, EccE Peptidase_M28 PF04389.17 AJD68025.1 - 0.064 12.9 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 Peptidase family M28 Peptidase_M18 PF02127.15 AJD68025.1 - 0.096 11.5 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) Asn_synthase PF00733.21 AJD68026.1 - 1e-99 334.6 0.5 6.8e-57 193.7 0.1 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 AJD68026.1 - 4.6e-41 139.6 0.0 7.9e-41 138.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 AJD68026.1 - 9.5e-34 116.5 0.0 2.9e-33 114.9 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 AJD68026.1 - 1.4e-12 47.6 0.0 2.4e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 AJD68026.1 - 0.13 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Beta_helix PF13229.6 AJD68027.1 - 6e-19 68.4 11.3 8.5e-18 64.7 6.0 2.2 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.13 AJD68027.1 - 1.1e-16 60.9 4.4 1.4e-16 60.5 4.4 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 AJD68027.1 - 7.8e-05 22.1 2.4 0.0027 17.1 2.2 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 AJD68027.1 - 0.0017 18.3 2.0 0.0067 16.3 1.3 2.4 1 1 0 1 1 1 1 Pectate lyase superfamily protein TonB_dep_Rec PF00593.24 AJD68028.1 - 2.8e-49 169.3 34.0 2.8e-49 169.3 34.0 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD68028.1 - 4.2e-18 65.9 0.4 2.4e-17 63.5 0.1 2.4 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain Penicil_amidase PF01804.18 AJD68029.1 - 1.4e-17 63.9 0.6 1.7e-17 63.7 0.6 1.0 1 0 0 1 1 1 1 Penicillin amidase Penicil_amidase PF01804.18 AJD68030.1 - 4.1e-105 353.2 10.9 4.6e-105 353.1 10.9 1.0 1 0 0 1 1 1 1 Penicillin amidase RHS PF03527.14 AJD68030.1 - 0.18 11.6 2.7 11 5.8 0.0 3.7 4 0 0 4 4 4 0 RHS protein Ferritin PF00210.24 AJD68031.1 - 2.6e-34 118.2 2.4 2.9e-34 118.0 2.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 AJD68031.1 - 0.043 14.2 1.7 0.081 13.3 1.7 1.5 1 1 0 1 1 1 0 Rubrerythrin TPMT PF05724.11 AJD68032.1 - 3e-83 278.8 0.0 3.4e-83 278.6 0.0 1.0 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DNA_topoisoIV PF00521.20 AJD68034.1 - 4.5e-132 441.0 0.0 5.4e-132 440.7 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 AJD68034.1 - 5.5e-11 41.8 0.4 1.1e-05 24.8 0.1 3.8 4 0 0 4 4 4 2 DNA gyrase C-terminal domain, beta-propeller HTH_18 PF12833.7 AJD68035.1 - 2.5e-21 75.7 3.8 3.8e-21 75.1 0.5 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD68035.1 - 1.6e-12 47.1 0.0 9.6e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 AJD68035.1 - 1.3e-08 34.8 1.6 1.7e-08 34.5 0.3 1.9 2 1 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 AJD68035.1 - 0.00016 21.3 0.7 0.00029 20.5 0.7 1.4 1 0 0 1 1 1 1 Cupin domain HgmA PF04209.13 AJD68035.1 - 0.0047 15.7 0.0 0.0062 15.3 0.0 1.1 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase MarR PF01047.22 AJD68036.1 - 8.5e-12 44.8 0.2 1.8e-11 43.8 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AJD68036.1 - 1.6e-10 40.7 0.7 3.3e-10 39.7 0.7 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AJD68036.1 - 5.3e-05 22.9 0.1 0.00013 21.7 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 AJD68036.1 - 0.00037 20.9 0.0 0.00072 20.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 AJD68036.1 - 0.00084 18.8 0.1 0.0017 17.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 AJD68036.1 - 0.0014 18.4 0.0 0.0026 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.10 AJD68036.1 - 0.0016 18.4 0.1 0.0049 16.9 0.0 1.7 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_20 PF12840.7 AJD68036.1 - 0.0025 17.8 0.9 0.0049 16.9 0.9 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AJD68036.1 - 0.0032 17.4 0.1 0.0065 16.4 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 AJD68036.1 - 0.0099 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 AJD68036.1 - 0.02 15.1 0.0 0.046 13.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 AJD68036.1 - 0.021 14.7 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 AJD68036.1 - 0.024 14.5 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 AJD68036.1 - 0.041 13.7 0.1 0.59 9.9 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain Dimerisation2 PF16864.5 AJD68036.1 - 0.074 13.0 0.2 0.14 12.2 0.2 1.4 1 0 0 1 1 1 0 Dimerisation domain OEP PF02321.18 AJD68037.1 - 7.5e-52 175.9 26.4 2.2e-28 99.4 13.2 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein HlyD_D23 PF16576.5 AJD68038.1 - 1.9e-17 63.2 7.3 4.7e-15 55.4 7.3 2.6 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD68038.1 - 1.2e-15 58.1 1.8 1.9e-12 47.8 0.1 3.2 2 1 1 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD68038.1 - 1.7e-14 53.3 11.5 1.4e-13 50.4 0.9 3.0 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 AJD68038.1 - 1.1e-10 41.3 0.7 6.7e-10 38.7 0.7 2.2 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD68038.1 - 0.00015 21.5 0.7 0.25 11.2 0.2 2.5 2 0 0 2 2 2 2 Biotin-requiring enzyme DUF5357 PF17310.2 AJD68038.1 - 0.0055 15.3 0.1 0.0092 14.6 0.1 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5357) OEP PF02321.18 AJD68038.1 - 0.0088 15.9 9.6 0.0088 15.9 9.6 2.5 2 1 1 3 3 3 1 Outer membrane efflux protein Spc7 PF08317.11 AJD68038.1 - 0.017 14.0 1.8 0.023 13.6 1.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2118 PF09891.9 AJD68038.1 - 0.019 14.9 0.1 2.6 8.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) HrpB7 PF09486.10 AJD68038.1 - 0.3 11.5 20.9 0.29 11.5 3.1 2.9 2 1 2 4 4 4 0 Bacterial type III secretion protein (HrpB7) MFS_1 PF07690.16 AJD68039.1 - 1e-52 179.2 36.9 1e-52 179.2 36.9 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily TRI12 PF06609.13 AJD68039.1 - 1.3e-12 47.0 11.7 1.3e-12 47.0 11.7 1.7 1 1 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 AJD68039.1 - 1.1e-08 34.3 4.0 1.1e-08 34.3 4.0 3.3 2 2 2 4 4 4 2 Sugar (and other) transporter MFS_2 PF13347.6 AJD68039.1 - 2.6e-06 26.3 4.5 2.6e-06 26.3 4.5 3.0 3 1 0 3 3 3 1 MFS/sugar transport protein MFS_1_like PF12832.7 AJD68039.1 - 6.9e-06 25.2 7.7 6.9e-06 25.2 7.7 2.3 2 0 0 2 2 2 1 MFS_1 like family OATP PF03137.20 AJD68039.1 - 0.00024 19.6 16.8 0.04 12.2 1.6 3.4 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family Glyco_hydro_3_C PF01915.22 AJD68040.1 - 7.3e-59 199.1 0.0 1.1e-58 198.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 AJD68040.1 - 7e-38 130.8 0.0 1.4e-37 129.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 AJD68040.1 - 8.7e-13 48.2 0.0 1.7e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain Peptidase_M14 PF00246.24 AJD68041.1 - 2.3e-38 132.7 0.0 3e-38 132.3 0.0 1.3 1 1 0 1 1 1 1 Zinc carboxypeptidase PTR2 PF00854.21 AJD68042.1 - 3.9e-73 246.6 13.6 1.5e-38 132.7 2.6 2.2 2 0 0 2 2 2 2 POT family MFS_1 PF07690.16 AJD68042.1 - 3.6e-11 42.6 59.5 3.5e-10 39.4 50.5 3.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Rhomboid PF01694.22 AJD68043.1 - 1.6e-26 93.1 8.0 1.6e-26 93.1 8.0 1.3 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 AJD68043.1 - 0.055 14.0 0.5 0.055 14.0 0.5 3.0 2 1 1 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) FeoB_associated PF12669.7 AJD68043.1 - 0.48 10.9 3.1 17 5.9 0.2 3.5 3 1 0 3 3 3 0 FeoB-associated Cys-rich membrane protein Acetyltransf_CG PF14542.6 AJD68045.1 - 9e-27 93.0 0.1 1.1e-26 92.7 0.1 1.1 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 AJD68045.1 - 0.012 15.8 0.1 0.018 15.3 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AJD68045.1 - 0.02 14.8 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ORF_2_N PF18492.1 AJD68045.1 - 0.14 12.3 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 Open reading frame 2 N-terminal domain PdaC PF13739.6 AJD68046.1 - 2.7e-06 28.3 0.0 4.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Deacetylase PdaC DUF3298 PF11738.8 AJD68046.1 - 0.00047 21.1 0.4 0.0012 19.8 0.4 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3298) DUF3558 PF12079.8 AJD68046.1 - 0.13 12.2 3.1 0.24 11.4 3.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) MarR PF01047.22 AJD68047.1 - 7.2e-15 54.7 0.0 7.1e-14 51.5 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AJD68047.1 - 2.4e-10 40.1 0.0 5.2e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 AJD68047.1 - 2.2e-05 24.9 0.0 6.1e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 AJD68047.1 - 0.0056 16.8 0.0 0.0073 16.5 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 AJD68047.1 - 0.089 12.7 0.0 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 AJD68047.1 - 0.13 12.7 0.1 0.48 10.8 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Peptidase_M3 PF01432.20 AJD68048.1 - 1e-131 440.4 0.4 1.5e-131 439.8 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M3 DUF969 PF06149.12 AJD68048.1 - 0.053 12.9 0.2 0.1 12.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF969) Peptidase_M50B PF13398.6 AJD68048.1 - 0.27 10.9 0.2 0.58 9.8 0.2 1.5 1 0 0 1 1 1 0 Peptidase M50B-like GSHPx PF00255.19 AJD68049.1 - 9.7e-40 134.5 0.0 1.2e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 AJD68049.1 - 0.00021 21.2 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family NAD_binding_1 PF00175.21 AJD68050.1 - 1e-07 32.6 0.0 1.5e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 AJD68050.1 - 1.1e-06 29.0 0.0 2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 AJD68050.1 - 0.065 13.4 0.0 0.98 9.5 0.0 2.1 2 0 0 2 2 2 0 Ferric reductase NAD binding domain ABC_tran PF00005.27 AJD68051.1 - 3e-35 121.7 0.0 5.2e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD68051.1 - 1.2e-07 31.9 0.0 0.0067 16.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD68051.1 - 1.1e-06 28.3 0.0 0.00022 20.7 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 AJD68051.1 - 8.8e-05 22.3 0.5 0.00048 19.9 0.5 2.0 1 1 0 1 1 1 1 ABC transporter transmembrane region AAA_22 PF13401.6 AJD68051.1 - 0.00016 21.9 0.3 0.0079 16.5 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 AJD68051.1 - 0.00063 20.2 1.2 0.0021 18.4 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 AJD68051.1 - 0.0032 17.2 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 AJD68051.1 - 0.0053 16.1 0.1 0.021 14.1 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin SRP54 PF00448.22 AJD68051.1 - 0.0069 16.0 0.0 0.021 14.5 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain TsaE PF02367.17 AJD68051.1 - 0.008 16.2 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 AJD68051.1 - 0.011 16.3 0.0 0.97 10.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 AJD68051.1 - 0.014 14.9 0.1 0.21 11.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 AJD68051.1 - 0.017 14.8 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AJD68051.1 - 0.018 15.0 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 AJD68051.1 - 0.02 15.4 0.0 0.041 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AJD68051.1 - 0.023 14.4 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AJD68051.1 - 0.025 14.5 0.0 0.15 12.0 0.0 2.3 2 0 0 2 2 2 0 NACHT domain DUF4395 PF14340.6 AJD68051.1 - 0.029 14.7 0.4 0.029 14.7 0.4 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4395) AAA_5 PF07728.14 AJD68051.1 - 0.042 13.9 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 AJD68051.1 - 0.058 13.8 0.0 0.28 11.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 AJD68051.1 - 0.13 12.5 0.0 2.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase APS_kinase PF01583.20 AJD68051.1 - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase G-alpha PF00503.20 AJD68051.1 - 0.17 11.0 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_13 PF13166.6 AJD68051.1 - 0.29 9.7 0.0 0.5 9.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Fumerase PF05681.14 AJD68052.1 - 2.6e-100 335.3 0.0 3.5e-100 334.9 0.0 1.2 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 AJD68052.1 - 4.7e-80 267.7 0.0 7.3e-80 267.1 0.0 1.3 1 0 0 1 1 1 1 Fumarase C-terminus GST_N PF02798.20 AJD68053.1 - 5.5e-13 49.1 0.0 9.9e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AJD68053.1 - 1.6e-12 47.7 0.0 3.3e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD68053.1 - 4.1e-09 36.6 0.0 7.3e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AJD68053.1 - 5.3e-08 33.0 0.0 8.3e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD68053.1 - 3.7e-07 30.1 0.2 7.8e-07 29.0 0.1 1.5 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD68053.1 - 8.6e-05 22.7 0.0 0.00015 21.9 0.0 1.5 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_5 PF16865.5 AJD68053.1 - 0.13 12.8 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Pro_CA PF00484.19 AJD68054.1 - 3.5e-40 137.9 0.0 5.2e-40 137.3 0.0 1.3 1 0 0 1 1 1 1 Carbonic anhydrase IncD PF17628.2 AJD68054.1 - 0.44 10.3 2.7 1.4 8.7 0.6 2.2 2 0 0 2 2 2 0 Inclusion membrane protein D PLA1 PF02253.15 AJD68055.1 - 1.5e-105 352.5 0.1 1.8e-105 352.2 0.1 1.1 1 0 0 1 1 1 1 Phospholipase A1 VasI PF11319.8 AJD68055.1 - 0.00044 20.0 0.2 0.00068 19.4 0.2 1.3 1 0 0 1 1 1 1 Type VI secretion system VasI, EvfG, VC_A0118 DUF456 PF04306.13 AJD68056.1 - 1.2e-41 142.2 24.3 1.2e-41 142.2 24.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF456) DUF1269 PF06897.12 AJD68056.1 - 0.054 13.8 3.8 0.054 13.8 3.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Gly-zipper_Omp PF13488.6 AJD68056.1 - 0.25 11.4 8.4 2.7 8.1 0.9 2.8 2 0 0 2 2 2 0 Glycine zipper CSD PF00313.22 AJD68057.1 - 1.8e-27 94.9 4.9 2e-27 94.8 4.9 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AJD68057.1 - 0.0096 15.6 0.3 0.017 14.8 0.3 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain CusF_Ec PF11604.8 AJD68057.1 - 0.012 15.5 0.2 0.018 15.0 0.2 1.4 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Rick_17kDa_Anti PF05433.15 AJD68058.1 - 3.3e-09 36.5 17.5 3.3e-09 36.5 17.5 1.9 2 0 0 2 2 2 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 AJD68058.1 - 1.8e-06 27.8 23.6 0.00082 19.3 7.1 2.7 2 1 1 3 3 3 2 Glycine zipper Gly-zipper_YMGG PF13441.6 AJD68058.1 - 2.1e-06 27.3 17.3 2.1e-06 27.3 17.3 1.6 2 0 0 2 2 2 1 YMGG-like Gly-zipper TraT PF05818.12 AJD68058.1 - 4e-05 23.4 3.6 5.5e-05 23.0 3.6 1.2 1 0 0 1 1 1 1 Enterobacterial TraT complement resistance protein DUF533 PF04391.12 AJD68058.1 - 0.027 14.1 1.6 0.037 13.6 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF533) DUF1269 PF06897.12 AJD68058.1 - 1.2 9.4 9.8 16 5.9 9.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) Cytochrom_C_2 PF01322.20 AJD68059.1 - 8.5e-05 23.4 0.7 0.00022 22.1 0.4 1.7 1 1 1 2 2 2 1 Cytochrome C' ThiF PF00899.21 AJD68060.1 - 1.2e-34 119.7 0.1 1.4e-34 119.5 0.1 1.1 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 AJD68060.1 - 3e-05 24.3 0.3 0.00014 22.1 0.3 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 AJD68060.1 - 0.011 16.2 0.2 0.02 15.3 0.2 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.24 AJD68060.1 - 0.036 13.7 0.1 0.041 13.5 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase TrkA_N PF02254.18 AJD68060.1 - 0.045 14.0 0.2 0.095 13.0 0.1 1.6 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 AJD68060.1 - 0.11 12.4 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 AJD68060.1 - 0.14 11.7 0.7 0.31 10.6 0.7 1.6 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TatD_DNase PF01026.21 AJD68061.1 - 1.5e-17 63.9 0.0 1.6e-17 63.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Rick_17kDa_Anti PF05433.15 AJD68063.1 - 2e-09 37.1 21.4 2e-09 37.1 21.4 2.2 2 0 0 2 2 2 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 AJD68063.1 - 0.0004 20.3 17.5 0.0004 20.3 17.5 2.0 2 0 0 2 2 2 1 Glycine zipper Gly-zipper_YMGG PF13441.6 AJD68063.1 - 0.0019 17.9 18.3 0.0019 17.9 18.3 2.0 2 0 0 2 2 2 1 YMGG-like Gly-zipper DUF2076 PF09849.9 AJD68063.1 - 0.15 12.1 2.2 0.24 11.4 2.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Peptidase_A8 PF01252.18 AJD68063.1 - 0.47 10.7 1.4 1.5 9.1 1.5 1.7 1 1 0 1 1 1 0 Signal peptidase (SPase) II DUF533 PF04391.12 AJD68063.1 - 0.86 9.2 2.8 2.1 7.9 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF533) Acyl-CoA_dh_N PF02771.16 AJD68064.1 - 2.7e-32 111.8 0.0 7.7e-32 110.3 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AJD68064.1 - 8.6e-30 103.9 5.6 1.3e-29 103.4 5.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AJD68064.1 - 5.8e-22 77.7 0.1 1.3e-21 76.6 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AJD68064.1 - 1.2e-09 38.6 3.4 2.2e-09 37.7 3.4 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF3857 PF12969.7 AJD68065.1 - 1.5e-22 80.5 0.0 2.7e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3857) Transglut_core PF01841.19 AJD68065.1 - 1.4e-07 31.9 0.0 5.7e-07 30.0 0.0 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily Yip1 PF04893.17 AJD68065.1 - 5.5e-05 22.9 26.4 5.5e-05 22.9 26.4 2.3 2 0 0 2 2 2 1 Yip1 domain GST_N PF02798.20 AJD68066.1 - 2.1e-16 60.0 0.0 3.5e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AJD68066.1 - 6e-15 55.4 0.0 1e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AJD68066.1 - 4.6e-11 42.8 0.1 6.9e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 AJD68066.1 - 1.1e-09 38.4 0.0 2.4e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD68066.1 - 4.4e-08 33.0 1.5 1.1e-07 31.8 1.5 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AJD68066.1 - 1.1e-06 28.7 0.0 1.8e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 AJD68066.1 - 0.006 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_4 PF17172.4 AJD68066.1 - 0.0073 17.0 0.0 0.014 16.1 0.0 1.6 1 1 0 1 1 1 1 Glutathione S-transferase N-terminal domain Glutaredoxin PF00462.24 AJD68066.1 - 0.12 12.7 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Asn_synthase PF00733.21 AJD68067.1 - 1e-109 367.5 0.1 1.3e-109 367.1 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 AJD68067.1 - 2.5e-47 159.8 0.0 6.6e-47 158.5 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 AJD68067.1 - 2.4e-45 154.0 0.0 7e-45 152.5 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 AJD68067.1 - 0.0002 20.9 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein QueC PF06508.13 AJD68067.1 - 0.00058 19.4 0.0 0.00093 18.8 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 AJD68067.1 - 0.083 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 NAD synthase FMN_red PF03358.15 AJD68068.1 - 2e-38 131.6 0.0 2.3e-38 131.4 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 AJD68068.1 - 1.4e-08 34.7 0.0 2.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold DnaB_C PF03796.15 AJD68069.1 - 2.1e-117 391.0 0.0 2.8e-117 390.6 0.0 1.1 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 AJD68069.1 - 1e-36 125.1 0.0 2.1e-36 124.1 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 AJD68069.1 - 3.5e-12 46.3 0.0 6.1e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD68069.1 - 0.0052 17.2 0.1 0.019 15.4 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 AJD68069.1 - 0.029 14.1 0.0 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 AJD68069.1 - 0.071 12.5 0.1 0.92 8.8 0.0 2.2 1 1 1 2 2 2 0 KaiC CbiA PF01656.23 AJD68069.1 - 0.15 12.1 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain FAD_binding_7 PF03441.14 AJD68070.1 - 4.5e-78 261.4 2.8 5.6e-78 261.0 1.6 1.7 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 AJD68070.1 - 3.1e-51 173.6 0.0 5.2e-51 172.9 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase DUF4499 PF14934.6 AJD68070.1 - 0.11 12.9 0.8 0.27 11.6 0.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4499) OmpA PF00691.20 AJD68071.1 - 8.3e-25 87.0 0.1 1.5e-24 86.2 0.1 1.4 1 0 0 1 1 1 1 OmpA family Gly-zipper_Omp PF13488.6 AJD68071.1 - 1.5e-11 44.1 4.8 4.4e-11 42.6 4.8 1.9 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_YMGG PF13441.6 AJD68071.1 - 6.1e-10 38.7 10.9 1.7e-09 37.2 10.9 1.8 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 AJD68071.1 - 0.00023 20.9 14.0 0.00092 18.9 0.4 2.9 3 0 0 3 3 3 2 Glycine-zipper domain Pilus_CpaD PF09476.10 AJD68071.1 - 0.00084 19.1 2.0 0.0021 17.8 0.3 2.1 2 0 0 2 2 2 1 Pilus biogenesis CpaD protein (pilus_cpaD) Rick_17kDa_Anti PF05433.15 AJD68071.1 - 0.014 15.3 15.9 0.1 12.5 3.1 2.7 1 1 1 2 2 2 0 Glycine zipper 2TM domain YtxH PF12732.7 AJD68071.1 - 0.042 14.4 3.7 0.75 10.4 0.2 3.0 3 1 0 3 3 3 0 YtxH-like protein DUF456 PF04306.13 AJD68071.1 - 0.051 13.9 0.2 0.083 13.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Romo1 PF10247.9 AJD68071.1 - 0.059 13.7 5.6 1.8 9.0 0.6 2.5 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 TraT PF05818.12 AJD68071.1 - 0.094 12.4 2.0 0.17 11.6 2.0 1.5 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF389 PF04087.14 AJD68071.1 - 0.12 12.4 0.8 0.21 11.6 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF389) Dehydrin PF00257.19 AJD68071.1 - 5.4 7.5 7.2 0.9 10.1 2.9 1.8 2 0 0 2 2 2 0 Dehydrin LysR_substrate PF03466.20 AJD68073.1 - 3.8e-39 134.2 0.1 5.6e-39 133.7 0.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD68073.1 - 7.1e-18 64.3 0.7 1.3e-17 63.5 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 AJD68073.1 - 0.044 13.6 0.0 0.19 11.6 0.0 2.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain adh_short PF00106.25 AJD68075.1 - 1.3e-09 37.8 0.0 1.8e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD68075.1 - 5.8e-09 35.9 0.0 6.8e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.6 AJD68075.1 - 2.5e-05 24.3 0.3 4.1e-05 23.5 0.3 1.4 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 AJD68075.1 - 0.00013 22.2 0.0 0.00032 20.9 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 AJD68075.1 - 0.00092 19.2 1.4 0.0027 17.6 0.8 2.1 2 1 0 2 2 2 1 KR domain F420_oxidored PF03807.17 AJD68075.1 - 0.0011 19.5 0.5 0.022 15.4 0.2 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 AJD68075.1 - 0.0035 17.0 0.4 0.0066 16.0 0.3 1.5 2 0 0 2 2 2 1 NmrA-like family Shikimate_DH PF01488.20 AJD68075.1 - 0.01 15.9 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 AJD68075.1 - 0.011 15.7 0.3 0.017 15.0 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 AJD68075.1 - 0.014 14.8 0.1 0.033 13.6 0.1 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family ApbA PF02558.16 AJD68075.1 - 0.028 14.1 0.3 0.05 13.2 0.3 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 AJD68075.1 - 0.063 13.8 0.3 0.91 10.0 0.1 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain FMN_red PF03358.15 AJD68075.1 - 0.098 12.4 0.1 0.36 10.5 0.0 2.0 2 1 0 2 2 2 0 NADPH-dependent FMN reductase Sacchrp_dh_NADP PF03435.18 AJD68075.1 - 0.1 12.8 0.1 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 AJD68075.1 - 0.12 12.6 0.2 0.26 11.5 0.2 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GDP_Man_Dehyd PF16363.5 AJD68075.1 - 0.13 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_7 PF13241.6 AJD68075.1 - 0.18 12.3 0.0 0.26 11.8 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding HlyD_D23 PF16576.5 AJD68076.1 - 1.8e-14 53.5 3.4 2.1e-13 50.0 3.4 2.1 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AJD68076.1 - 5.2e-12 45.4 0.0 3.5e-10 39.5 0.0 2.8 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD_3 PF13437.6 AJD68076.1 - 2e-07 31.7 0.1 0.0044 17.7 0.1 3.4 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl PF00364.22 AJD68076.1 - 0.018 14.8 0.0 0.37 10.7 0.0 2.5 2 0 0 2 2 2 0 Biotin-requiring enzyme PQQ_3 PF13570.6 AJD68076.1 - 0.16 12.5 2.7 1.2 9.7 0.5 3.1 3 0 0 3 3 3 0 PQQ-like domain Caps_synth_GfcC PF06251.11 AJD68076.1 - 0.2 11.2 1.7 13 5.4 0.0 2.2 2 0 0 2 2 2 0 Capsule biosynthesis GfcC ACR_tran PF00873.19 AJD68077.1 - 0 1157.5 13.3 0 1157.4 13.3 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD68077.1 - 5.1e-15 55.2 29.4 6.3e-11 41.8 11.6 2.5 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 AJD68077.1 - 0.00035 20.0 15.1 0.00035 20.0 15.1 2.5 2 0 0 2 2 2 1 Protein export membrane protein Molydop_binding PF01568.21 AJD68077.1 - 0.07 13.2 0.2 5.8 7.0 0.0 2.9 3 0 0 3 3 3 0 Molydopterin dinucleotide binding domain DUF561 PF04481.12 AJD68077.1 - 0.1 11.8 0.5 0.19 10.9 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) adh_short PF00106.25 AJD68078.1 - 1.1e-50 171.9 0.3 2.4e-50 170.7 0.3 1.5 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD68078.1 - 3.4e-38 131.5 0.2 4.8e-38 131.0 0.2 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD68078.1 - 1.3e-10 41.5 0.4 2.1e-10 40.8 0.4 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 AJD68078.1 - 0.00021 21.2 0.8 0.00036 20.5 0.8 1.4 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 AJD68078.1 - 0.013 15.0 1.4 0.022 14.3 1.4 1.3 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.21 AJD68078.1 - 0.04 13.4 0.5 0.047 13.1 0.4 1.3 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 AJD68078.1 - 0.076 12.4 0.0 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) OEP PF02321.18 AJD68079.1 - 5.2e-48 163.3 31.9 3.3e-24 85.7 14.4 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein LPAM_1 PF08139.12 AJD68079.1 - 0.088 13.3 1.1 0.21 12.1 1.1 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site GGDEF PF00990.21 AJD68080.1 - 4.2e-37 127.4 0.0 5.4e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AJD68080.1 - 0.047 14.0 0.2 0.097 12.9 0.2 1.6 1 0 0 1 1 1 0 GGDEF-like domain Phage_TAC_11 PF11836.8 AJD68080.1 - 0.11 12.6 3.5 5.5 7.2 0.1 3.5 2 1 1 3 3 3 0 Phage tail tube protein, GTA-gp10 PhoR PF11808.8 AJD68080.1 - 6.6 7.2 8.9 2.9 8.4 3.8 2.5 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR GGDEF PF00990.21 AJD68082.1 - 7.1e-46 155.9 0.0 1.3e-45 155.0 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CHASE3 PF05227.13 AJD68082.1 - 2.8e-30 105.0 3.9 2.8e-30 105.0 3.9 2.6 3 0 0 3 3 3 1 CHASE3 domain GAF_2 PF13185.6 AJD68082.1 - 1.2e-08 35.3 2.5 2.8e-08 34.2 2.5 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 AJD68082.1 - 1.9e-07 31.5 1.1 4.9e-07 30.1 1.1 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 AJD68082.1 - 0.0026 18.4 0.9 0.0064 17.1 0.9 1.7 1 0 0 1 1 1 1 GAF domain Peptidase_M78 PF06114.13 AJD68088.1 - 1e-13 51.3 0.0 1.9e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain Phage_integrase PF00589.22 AJD68092.1 - 2.8e-11 43.5 0.0 1e-10 41.7 0.0 1.9 2 1 0 2 2 2 1 Phage integrase family DUF4755 PF15947.5 AJD68093.1 - 1e-06 28.8 2.2 0.0046 16.9 0.2 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4755) Sharpin_PH PF16764.5 AJD68093.1 - 0.13 12.0 0.0 0.2 11.4 0.0 1.6 1 1 0 1 1 1 0 Sharpin PH domain HTH_3 PF01381.22 AJD68095.1 - 2.6e-05 24.2 0.0 4.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 AJD68095.1 - 0.096 13.0 0.1 0.15 12.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fic PF02661.18 AJD68096.1 - 4.5e-07 30.7 0.0 9e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Fic/DOC family HTH_Tnp_1 PF01527.20 AJD68099.1 - 1.2e-21 76.7 0.0 1.6e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AJD68099.1 - 3.8e-07 29.7 0.0 7.9e-07 28.7 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 AJD68099.1 - 1.2e-06 28.6 0.0 2.2e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AJD68099.1 - 0.00039 20.6 0.1 0.00071 19.7 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD68099.1 - 0.00039 20.4 0.0 0.00056 19.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_26 PF13443.6 AJD68099.1 - 0.0018 18.6 0.7 0.088 13.3 0.0 2.3 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 AJD68099.1 - 0.012 15.6 0.1 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD68099.1 - 0.041 13.5 0.2 0.2 11.3 0.0 2.1 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_Tnp_IS630 PF01710.16 AJD68099.1 - 0.046 13.8 0.0 1.3 9.1 0.0 2.0 1 1 1 2 2 2 0 Transposase CENP-B_N PF04218.13 AJD68099.1 - 0.048 13.3 0.1 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain TSC22 PF01166.18 AJD68099.1 - 0.08 13.3 0.9 0.15 12.4 0.9 1.5 1 1 0 1 1 1 0 TSC-22/dip/bun family rve PF00665.26 AJD68100.1 - 1.1e-24 86.9 0.0 2.4e-24 85.8 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD68100.1 - 1.1e-23 82.8 0.2 2.4e-23 81.7 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD68100.1 - 3.9e-05 23.7 0.1 7.6e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 HTH-like domain HTH_psq PF05225.16 AJD68100.1 - 0.0019 17.9 0.1 0.005 16.5 0.1 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain DDE_Tnp_1_2 PF13586.6 AJD68100.1 - 0.044 14.1 0.5 0.25 11.7 0.1 2.3 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.6 AJD68100.1 - 0.05 13.8 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 DDE domain Rhomboid_SP PF12595.8 AJD68100.1 - 0.22 10.9 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Rhomboid serine protease MobA_MobL PF03389.15 AJD68102.1 - 3.5e-37 128.3 0.3 1.5e-36 126.2 0.3 2.0 1 1 0 1 1 1 1 MobA/MobL family T2SSF PF00482.23 AJD68102.1 - 0.0021 18.0 0.2 0.0059 16.6 0.2 1.7 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F TPR_2 PF07719.17 AJD68102.1 - 0.67 10.2 2.8 1.2 9.4 0.6 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Mltc_N PF11873.8 AJD68104.1 - 0.015 15.0 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 Membrane-bound lytic murein transglycosylase C, N-terminal domain Spore_III_AB PF09548.10 AJD68104.1 - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DUF4209 PF13910.6 AJD68105.1 - 1.8e-15 56.9 0.2 6.4e-14 52.0 0.3 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4209) Phage_integrase PF00589.22 AJD68106.1 - 2.8e-14 53.3 0.0 5.7e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family DUF3258 PF11646.8 AJD68106.1 - 0.081 13.1 0.0 0.33 11.1 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF3258 Peptidase_S8 PF00082.22 AJD68107.1 - 1e-43 149.8 0.0 1.5e-43 149.2 0.0 1.2 1 0 0 1 1 1 1 Subtilase family Abhydrolase_6 PF12697.7 AJD68107.1 - 0.0012 19.5 0.8 0.0012 19.5 0.8 3.7 2 1 2 4 4 4 1 Alpha/beta hydrolase family Thioesterase PF00975.20 AJD68107.1 - 0.0038 17.4 0.1 0.0094 16.1 0.0 1.7 2 0 0 2 2 2 1 Thioesterase domain DUF3089 PF11288.8 AJD68107.1 - 0.082 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) PGAP1 PF07819.13 AJD68107.1 - 0.13 12.0 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein SmpB PF01668.18 AJD68108.1 - 2.3e-56 189.6 0.8 2.9e-56 189.4 0.8 1.1 1 0 0 1 1 1 1 SmpB protein Polyketide_cyc PF03364.20 AJD68109.1 - 2.5e-25 89.2 0.0 2.8e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 AJD68109.1 - 2.8e-07 30.9 0.0 3.2e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Ub-RnfH PF03658.14 AJD68110.1 - 7.5e-21 74.3 0.0 1e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 RnfH family Ubiquitin ThiS PF02597.20 AJD68110.1 - 7.5e-05 23.3 0.0 0.0001 22.9 0.0 1.2 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 AJD68110.1 - 0.08 12.8 0.1 0.13 12.1 0.1 1.4 1 1 0 1 1 1 0 Mut7-C ubiquitin SmpA_OmlA PF04355.13 AJD68111.1 - 6.1e-22 77.2 0.1 8e-22 76.8 0.1 1.2 1 0 0 1 1 1 1 SmpA / OmlA family DUF3192 PF11399.8 AJD68111.1 - 0.0036 17.2 0.0 0.0086 16.0 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3192) LPAM_2 PF13627.6 AJD68111.1 - 5.1 7.1 6.3 8.3 6.4 6.3 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site FUR PF01475.19 AJD68112.1 - 1.9e-42 144.2 0.6 2.2e-42 144.0 0.6 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 AJD68112.1 - 0.0065 16.4 0.6 0.034 14.1 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_32 PF13565.6 AJD68112.1 - 0.013 16.1 0.4 0.025 15.2 0.1 1.6 2 0 0 2 2 2 0 Homeodomain-like domain HTH_12 PF08461.10 AJD68112.1 - 0.039 13.9 0.3 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain DUF5599 PF18141.1 AJD68112.1 - 0.051 13.8 0.0 0.082 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5599) Arg_repressor PF01316.21 AJD68112.1 - 0.082 12.7 0.0 0.23 11.3 0.0 1.8 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain DUF724 PF05266.14 AJD68112.1 - 0.14 12.0 0.5 0.25 11.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF724) SMC_N PF02463.19 AJD68113.1 - 4e-20 72.2 0.0 6.5e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AJD68113.1 - 1.3e-08 35.6 0.0 4.6e-08 33.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AJD68113.1 - 0.00091 18.9 0.0 0.0024 17.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain DHR10 PF18595.1 AJD68113.1 - 0.022 14.8 1.7 0.022 14.8 1.7 3.0 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain AAA_21 PF13304.6 AJD68113.1 - 0.024 14.5 0.0 12 5.6 0.2 3.1 2 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 AJD68113.1 - 0.038 13.9 0.0 4.5 7.1 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_15 PF13175.6 AJD68113.1 - 0.12 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF5632 PF18646.1 AJD68113.1 - 0.19 11.8 1.3 5.2 7.2 0.0 3.3 3 0 0 3 3 3 0 Family of unknown function (DUF5632) AAA_22 PF13401.6 AJD68113.1 - 0.25 11.6 2.6 0.51 10.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain Spc7 PF08317.11 AJD68113.1 - 0.35 9.7 5.6 0.049 12.5 0.5 1.9 2 0 0 2 2 2 0 Spc7 kinetochore protein HrcA PF01628.21 AJD68114.1 - 1.8e-56 191.5 0.1 2.5e-56 191.0 0.1 1.2 1 0 0 1 1 1 1 HrcA protein C terminal domain HrcA_DNA-bdg PF03444.15 AJD68114.1 - 2.9e-06 26.9 0.0 6.2e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 AJD68114.1 - 0.013 15.5 0.0 0.04 13.8 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_15 PF12324.8 AJD68114.1 - 0.034 14.1 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_DeoR PF08220.12 AJD68114.1 - 0.051 13.3 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 AJD68114.1 - 0.067 13.5 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 AJD68114.1 - 0.12 12.4 0.1 0.12 12.4 0.1 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain RuvB_C PF05491.13 AJD68114.1 - 0.15 12.0 0.0 0.92 9.4 0.0 2.3 1 1 0 1 1 1 0 RuvB C-terminal winged helix domain GrpE PF01025.19 AJD68115.1 - 5.3e-47 159.6 0.0 6.4e-47 159.3 0.0 1.0 1 0 0 1 1 1 1 GrpE TPR_MLP1_2 PF07926.12 AJD68115.1 - 0.063 13.3 1.2 0.089 12.9 1.2 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein HSP70 PF00012.20 AJD68116.1 - 4.4e-261 867.3 15.0 5.1e-261 867.1 15.0 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 AJD68116.1 - 1.5e-14 53.6 1.0 3e-11 42.7 0.1 2.7 2 1 0 2 2 2 2 MreB/Mbl protein FGGY_C PF02782.16 AJD68116.1 - 4.3e-06 26.6 0.1 1e-05 25.4 0.1 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 AJD68116.1 - 0.026 14.9 7.2 1.3 9.4 0.1 3.6 3 2 0 3 3 3 0 Cell division protein FtsA DnaJ_C PF01556.18 AJD68117.1 - 2.1e-40 138.2 0.0 2.9e-40 137.7 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 AJD68117.1 - 2.4e-26 91.6 0.2 3.6e-26 91.1 0.2 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 AJD68117.1 - 1.1e-13 51.3 16.8 2.1e-13 50.4 16.8 1.5 1 0 0 1 1 1 1 DnaJ central domain Cytochrome_C7 PF14522.6 AJD68117.1 - 0.034 14.2 9.8 3.6 7.7 9.8 2.7 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c Anti-TRAP PF15777.5 AJD68117.1 - 0.064 13.2 14.1 0.71 9.9 2.1 3.6 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein HypA PF01155.19 AJD68117.1 - 1.4 9.0 9.3 1.1 9.3 1.0 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cytochrom_CIII PF02085.16 AJD68117.1 - 3.3 8.1 15.4 1.1 9.7 7.7 2.7 2 1 0 2 2 2 0 Class III cytochrome C family Phos_pyr_kin PF08543.12 AJD68119.1 - 6.3e-19 68.3 0.0 8.4e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 AJD68119.1 - 4e-11 42.8 0.0 5.2e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 AJD68119.1 - 0.02 14.4 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate kinase PDH PF02153.17 AJD68120.1 - 4.4e-24 84.9 0.0 6.3e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase ACT PF01842.25 AJD68120.1 - 1.4e-07 31.1 0.0 3.3e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_5 PF13710.6 AJD68120.1 - 0.00028 20.6 0.8 0.00089 19.1 0.0 2.2 3 0 0 3 3 3 1 ACT domain Actin PF00022.19 AJD68121.1 - 0.05 12.2 0.0 0.054 12.1 0.0 1.0 1 0 0 1 1 1 0 Actin OEP PF02321.18 AJD68122.1 - 6.5e-30 104.3 16.2 1.5e-20 73.8 1.4 2.4 3 0 0 3 3 3 2 Outer membrane efflux protein HlyD_3 PF13437.6 AJD68123.1 - 2e-14 54.2 0.1 1.1e-09 39.0 0.0 2.9 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD68123.1 - 1.7e-13 50.2 2.4 4.2e-09 36.1 0.0 3.5 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD_D23 PF16576.5 AJD68123.1 - 8.8e-11 41.4 0.1 2.1e-10 40.2 0.1 1.7 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl PF00364.22 AJD68123.1 - 6.2e-06 26.0 0.0 0.026 14.3 0.0 2.6 2 0 0 2 2 2 2 Biotin-requiring enzyme Peptidase_M23 PF01551.22 AJD68123.1 - 0.00051 20.2 0.0 0.026 14.7 0.0 2.5 2 0 0 2 2 2 1 Peptidase family M23 ABC_membrane PF00664.23 AJD68124.1 - 1.3e-05 25.0 17.5 0.00013 21.7 17.5 2.0 1 1 0 1 1 1 1 ABC transporter transmembrane region LysR_substrate PF03466.20 AJD68125.1 - 4e-42 144.0 6.8 5.3e-42 143.6 6.8 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD68125.1 - 9.3e-24 83.2 0.3 2.2e-23 81.9 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD68125.1 - 0.013 15.2 0.0 0.048 13.5 0.0 2.0 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF134 PF02001.16 AJD68125.1 - 0.14 12.8 0.0 5 7.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function DUF134 ABC_membrane PF00664.23 AJD68126.1 - 2.1e-48 165.3 6.1 2.7e-48 165.0 6.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 AJD68126.1 - 9.1e-33 113.7 0.0 1.6e-32 112.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AJD68126.1 - 2e-08 34.0 0.4 1.8e-06 27.5 0.0 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD68126.1 - 0.00014 22.3 1.2 0.00014 22.3 1.2 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 AJD68126.1 - 0.00022 21.5 0.1 0.0016 18.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD68126.1 - 0.0015 18.3 0.0 0.0043 16.7 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 AJD68126.1 - 0.0032 16.4 0.1 0.0073 15.1 0.1 1.6 1 1 0 1 1 1 1 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 AJD68126.1 - 0.0053 16.1 0.1 0.016 14.5 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin RsgA_GTPase PF03193.16 AJD68126.1 - 0.0072 16.2 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 AJD68126.1 - 0.01 16.2 0.2 6.4 7.2 0.0 3.5 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 AJD68126.1 - 0.011 15.6 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 AJD68126.1 - 0.027 14.0 0.2 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 AJD68126.1 - 0.038 14.2 0.1 0.13 12.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AJD68126.1 - 0.081 13.0 0.0 0.27 11.3 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 AJD68126.1 - 0.1 12.1 0.1 0.24 10.9 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region ATP-synt_I PF03899.15 AJD68126.1 - 0.13 12.7 0.3 0.13 12.7 0.3 3.5 3 0 0 3 3 3 0 ATP synthase I chain Hypoth_Ymh PF09509.10 AJD68126.1 - 0.15 11.9 0.4 1.7 8.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (Hypoth_ymh) SbcCD_C PF13558.6 AJD68126.1 - 1.7 8.9 4.8 1.9 8.7 1.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF3851 PF12962.7 AJD68126.1 - 2.2 8.6 7.9 0.16 12.3 0.5 2.6 3 0 0 3 3 2 0 Protein of unknown function (DUF3851) UPF0029 PF01205.19 AJD68127.1 - 1.7e-28 99.0 0.1 3.2e-28 98.1 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 AJD68127.1 - 1e-08 34.9 0.0 1.7e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 AJD68127.1 - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Elongation factor G C-terminus Lysine_decarbox PF03641.14 AJD68128.1 - 4.6e-38 130.3 0.2 5.9e-38 130.0 0.2 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 AJD68128.1 - 2.4e-15 56.5 0.8 3e-15 56.1 0.8 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Pyr_redox_2 PF07992.14 AJD68129.1 - 3.2e-62 210.4 4.2 5.2e-62 209.7 4.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AJD68129.1 - 6.4e-37 126.2 0.2 2.2e-36 124.5 0.2 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 AJD68129.1 - 1.4e-20 73.6 3.2 1.8e-16 60.5 0.3 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AJD68129.1 - 1e-08 34.8 4.1 0.00091 18.6 0.4 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 AJD68129.1 - 1.5e-08 34.2 4.4 1e-07 31.4 0.3 2.5 3 0 0 3 3 3 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 AJD68129.1 - 2.5e-06 27.5 4.7 0.00022 21.2 0.2 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 AJD68129.1 - 4.5e-06 25.6 14.9 2.1e-05 23.4 1.5 3.4 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.24 AJD68129.1 - 5.1e-06 25.8 2.4 5.1e-06 25.8 2.4 3.2 2 1 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 AJD68129.1 - 5.9e-06 25.8 2.0 0.016 14.5 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain 2-Hacid_dh_C PF02826.19 AJD68129.1 - 5.3e-05 22.6 0.5 0.35 10.2 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 AJD68129.1 - 7.3e-05 22.0 3.6 0.0032 16.6 1.3 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 AJD68129.1 - 8.6e-05 22.7 3.7 0.065 13.5 0.6 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 AJD68129.1 - 0.00011 21.6 4.5 0.00013 21.5 3.5 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 AJD68129.1 - 0.00015 21.1 0.2 0.00015 21.1 0.2 2.0 2 0 0 2 2 2 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 AJD68129.1 - 0.0011 18.6 0.4 0.82 9.2 0.3 2.4 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 AJD68129.1 - 0.0012 18.6 11.5 0.016 14.8 0.1 3.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase XdhC_C PF13478.6 AJD68129.1 - 0.0035 17.8 0.6 1.2 9.7 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain Pyr_redox_3 PF13738.6 AJD68129.1 - 0.0087 15.4 10.7 0.13 11.4 1.5 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Nairovirus_M PF07948.11 AJD68129.1 - 0.079 11.2 0.0 0.11 10.7 0.0 1.1 1 0 0 1 1 1 0 Nairovirus M polyprotein-like 2-oxoacid_dh PF00198.23 AJD68130.1 - 1.5e-83 279.8 0.0 1.9e-83 279.5 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 AJD68130.1 - 2.2e-19 69.0 0.8 4.4e-19 68.1 0.8 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 AJD68130.1 - 1.3e-06 28.6 0.1 1.3e-06 28.6 0.1 2.4 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 AJD68130.1 - 0.00038 20.2 0.1 0.027 14.3 0.1 2.6 1 1 1 2 2 2 1 Biotin-lipoyl like GCV_H PF01597.19 AJD68130.1 - 0.0078 16.1 0.9 0.04 13.8 0.2 2.4 2 1 1 3 3 3 1 Glycine cleavage H-protein SAPS PF04499.15 AJD68130.1 - 0.085 11.6 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein HlyD_3 PF13437.6 AJD68130.1 - 0.093 13.4 0.5 1.6 9.5 0.2 2.4 1 1 1 2 2 2 0 HlyD family secretion protein Transket_pyr PF02779.24 AJD68131.1 - 5.3e-63 211.9 0.0 1.4e-62 210.5 0.0 1.7 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain E1_dh PF00676.20 AJD68131.1 - 7.1e-54 182.8 0.1 1.1e-53 182.1 0.1 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component OxoGdeHyase_C PF16870.5 AJD68131.1 - 1.5e-51 174.1 0.0 2.7e-51 173.3 0.0 1.5 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase C-terminal 2-oxogl_dehyd_N PF16078.5 AJD68131.1 - 1.5e-15 56.5 0.1 2.9e-15 55.6 0.1 1.5 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase N-terminus PFOR_II PF17147.4 AJD68131.1 - 0.14 12.5 0.0 0.42 10.9 0.0 1.8 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Acetyltransf_10 PF13673.7 AJD68132.1 - 2.8e-08 33.8 0.0 4.8e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD68132.1 - 5.6e-06 26.6 0.0 9.7e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 AJD68132.1 - 0.00094 19.3 0.0 0.0018 18.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 AJD68132.1 - 0.001 19.5 0.0 0.0018 18.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Cupin_4 PF08007.12 AJD68133.1 - 3.4e-103 345.5 0.0 4.9e-103 344.9 0.0 1.2 1 0 0 1 1 1 1 Cupin superfamily protein DUF5323 PF17257.2 AJD68133.1 - 0.035 14.0 0.1 0.088 12.7 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5323) AraC_binding PF02311.19 AJD68133.1 - 0.057 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_8 PF13621.6 AJD68133.1 - 0.23 11.2 5.3 0.44 10.2 1.2 3.0 3 1 0 3 3 3 0 Cupin-like domain DUF3060 PF11259.8 AJD68134.1 - 1.1e-13 50.7 1.9 2.6e-12 46.2 0.6 2.1 1 1 0 2 2 2 2 Protein of unknown function (DUF3060) Curlin_rpt PF07012.12 AJD68134.1 - 1.1 9.4 5.4 3.1 7.9 0.3 2.8 3 0 0 3 3 3 0 Curlin associated repeat Lyase_1 PF00206.20 AJD68135.1 - 7e-61 206.3 0.0 1.1e-60 205.7 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 AJD68135.1 - 1.9e-49 166.6 0.0 1.1e-48 164.1 0.0 2.2 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal DUF4072 PF13284.6 AJD68135.1 - 1.6 9.2 5.7 12 6.5 0.0 4.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4072) CAP PF00188.26 AJD68136.1 - 2e-06 28.6 0.0 3.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Cysteine-rich secretory protein family fn3 PF00041.21 AJD68136.1 - 0.18 12.2 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 Fibronectin type III domain DUF21 PF01595.20 AJD68137.1 - 1.5e-46 158.3 1.1 2.2e-46 157.7 1.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 AJD68137.1 - 7.5e-17 61.1 0.0 1.2e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 AJD68137.1 - 8.4e-14 51.8 0.0 5.2e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 CBS domain Bac_rhodopsin PF01036.18 AJD68137.1 - 0.034 13.7 0.8 0.069 12.7 0.8 1.4 1 0 0 1 1 1 0 Bacteriorhodopsin-like protein Lyase_1 PF00206.20 AJD68138.1 - 8.7e-99 330.8 0.0 1.1e-98 330.5 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 AJD68138.1 - 7.5e-20 71.1 0.4 8.3e-19 67.8 0.1 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus APG17 PF04108.12 AJD68138.1 - 0.18 10.8 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg17 ADSL_C PF10397.9 AJD68138.1 - 1.2 9.7 3.3 5.3 7.7 0.1 3.4 2 2 1 3 3 3 0 Adenylosuccinate lyase C-terminus HisKA_3 PF07730.13 AJD68138.1 - 1.4 9.5 4.6 53 4.4 0.0 3.9 3 1 1 4 4 4 0 Histidine kinase DUF2884 PF11101.8 AJD68140.1 - 8.9e-16 58.1 0.0 5e-10 39.3 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2884) DUF3482 PF11981.8 AJD68140.1 - 0.0052 16.2 1.1 0.0083 15.6 1.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3482) NFACT-C PF11923.8 AJD68140.1 - 0.02 14.8 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 NFACT protein C-terminal domain DUF2807 PF10988.8 AJD68141.1 - 4.3e-08 33.2 15.2 2.9e-05 23.9 13.8 3.1 1 1 1 2 2 2 2 Putative auto-transporter adhesin, head GIN domain DUF4097 PF13349.6 AJD68141.1 - 1.4e-07 31.1 5.4 9.6e-07 28.4 5.3 2.2 1 1 0 1 1 1 1 Putative adhesin ABC2_membrane_5 PF13346.6 AJD68142.1 - 0.0019 17.8 2.6 0.0019 17.8 2.6 2.6 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 AJD68142.1 - 4.4 6.3 18.1 2.4 7.2 15.8 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein NapE PF06796.11 AJD68142.1 - 8.9 5.9 13.4 8.4 6.0 5.4 2.8 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE ABC_tran PF00005.27 AJD68143.1 - 5.8e-20 72.2 0.0 9.1e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD68143.1 - 9.9e-13 48.5 0.3 3.6e-05 23.7 0.0 2.4 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD68143.1 - 6.4e-05 22.5 0.2 0.27 10.6 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 AJD68143.1 - 0.0047 16.7 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AJD68143.1 - 0.0054 17.3 0.2 0.012 16.1 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 AJD68143.1 - 0.0067 17.0 2.1 0.41 11.2 2.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AJD68143.1 - 0.0099 15.6 0.2 0.15 11.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 AJD68143.1 - 0.019 15.2 1.2 0.25 11.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 AJD68143.1 - 0.025 14.3 0.3 0.055 13.2 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 AJD68143.1 - 0.062 13.7 0.7 0.24 11.8 0.7 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 AJD68143.1 - 0.082 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 AJD68143.1 - 6.2 5.5 6.3 10 4.8 0.0 2.8 3 0 0 3 3 3 0 Predicted ATPase of the ABC class GntR PF00392.21 AJD68144.1 - 4.1e-14 52.0 0.2 6.9e-14 51.3 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 AJD68144.1 - 0.0014 19.0 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 AJD68144.1 - 0.018 15.0 0.0 0.027 14.4 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 AJD68144.1 - 0.022 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2203 PF09969.9 AJD68144.1 - 0.15 12.8 0.0 0.21 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) HTH_36 PF13730.6 AJD68144.1 - 0.17 11.8 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GSHPx PF00255.19 AJD68146.1 - 2.2e-32 110.9 0.0 2.6e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 AJD68146.1 - 0.02 14.8 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.10 AJD68146.1 - 0.15 11.8 0.0 0.41 10.3 0.0 1.8 1 1 0 1 1 1 0 Redoxin DUF4174 PF13778.6 AJD68146.1 - 0.22 12.0 0.0 0.31 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) FKBP_N PF01346.18 AJD68147.1 - 1.1e-26 93.6 7.5 2.6e-18 66.8 1.3 2.5 2 1 1 3 3 3 2 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FKBP_C PF00254.28 AJD68147.1 - 8.1e-26 90.2 0.0 1.9e-25 89.0 0.0 1.6 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase UDPG_MGDP_dh_N PF03721.14 AJD68148.1 - 4.8e-69 231.7 0.0 8e-69 231.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 AJD68148.1 - 1.5e-39 134.1 0.0 2.7e-39 133.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 AJD68148.1 - 8.2e-34 116.2 0.0 3e-33 114.4 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ApbA PF02558.16 AJD68148.1 - 0.00014 21.5 0.1 0.00051 19.7 0.1 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 AJD68148.1 - 0.00079 19.4 0.4 0.0023 17.8 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 AJD68148.1 - 0.0057 16.8 0.1 2.5 8.2 0.1 3.2 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AJD68148.1 - 0.0085 16.3 0.3 0.19 12.0 0.2 2.4 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_Gly3P_dh_N PF01210.23 AJD68148.1 - 0.036 14.0 0.1 0.66 9.9 0.0 2.8 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.19 AJD68148.1 - 0.043 13.1 0.3 0.085 12.1 0.3 1.5 1 0 0 1 1 1 0 FAD binding domain XdhC_C PF13478.6 AJD68148.1 - 0.064 13.8 1.6 9.4 6.8 0.3 3.6 3 1 0 3 3 3 0 XdhC Rossmann domain F420_oxidored PF03807.17 AJD68148.1 - 0.26 11.9 3.5 7.4 7.2 0.1 4.1 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent SlyX PF04102.12 AJD68149.1 - 1e-15 58.0 0.3 1.3e-15 57.8 0.3 1.1 1 0 0 1 1 1 1 SlyX GatB_Yqey PF02637.18 AJD68149.1 - 0.042 13.7 0.0 0.049 13.5 0.0 1.1 1 0 0 1 1 1 0 GatB domain DUF2058 PF09831.9 AJD68150.1 - 1.5e-22 80.6 0.5 2.1e-22 80.1 0.2 1.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2058) Phenol_MetA_deg PF13557.6 AJD68151.1 - 8.2e-12 45.6 8.3 1.2e-11 45.0 8.3 1.3 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation Peripla_BP_3 PF13377.6 AJD68152.1 - 1.3e-32 113.4 3.8 2.5e-32 112.5 3.8 1.5 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD68152.1 - 2.9e-23 82.7 1.1 3.7e-23 82.3 1.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 AJD68152.1 - 3e-22 79.4 0.1 4e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 AJD68152.1 - 1.7e-11 43.7 0.1 1.7e-11 43.7 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TetR_N PF00440.23 AJD68152.1 - 0.0055 16.5 0.6 0.3 10.9 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.6 AJD68152.1 - 0.079 12.9 0.0 0.26 11.3 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 AJD68152.1 - 0.086 12.6 0.2 0.24 11.2 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 AJD68152.1 - 0.12 12.4 0.1 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 MarR family MFS_1 PF07690.16 AJD68153.1 - 3.3e-22 78.9 47.3 6.7e-22 77.9 43.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PfkB PF00294.24 AJD68154.1 - 2.6e-66 224.0 0.1 2.9e-66 223.8 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase GlcNAc_2-epim PF07221.11 AJD68155.1 - 1.8e-124 415.5 19.3 2.2e-124 415.2 19.3 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.13 AJD68155.1 - 0.00023 20.7 1.9 0.3 10.6 0.0 2.9 2 1 0 2 2 2 2 D-glucuronyl C5-epimerase C-terminus Met_synt_B12 PF02965.17 AJD68156.1 - 8.3e-125 415.7 0.0 1.3e-124 415.1 0.0 1.3 1 0 0 1 1 1 1 Vitamin B12 dependent methionine synthase, activation domain Pterin_bind PF00809.22 AJD68156.1 - 5.7e-61 206.3 1.1 1.1e-60 205.4 0.8 1.6 2 0 0 2 2 2 1 Pterin binding enzyme B12-binding_2 PF02607.17 AJD68156.1 - 1.1e-26 93.0 3.3 2.2e-26 92.1 0.1 2.9 3 0 0 3 3 3 1 B12 binding domain B12-binding PF02310.19 AJD68156.1 - 6e-20 71.5 0.3 1.6e-19 70.1 0.3 1.7 1 0 0 1 1 1 1 B12 binding domain ComA PF02679.15 AJD68156.1 - 0.067 12.7 0.3 2 7.8 0.0 2.3 1 1 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) S-methyl_trans PF02574.16 AJD68157.1 - 6.9e-81 272.0 0.0 7.9e-81 271.8 0.0 1.0 1 0 0 1 1 1 1 Homocysteine S-methyltransferase Methyltransf_11 PF08241.12 AJD68158.1 - 2.3e-24 85.9 0.1 6.7e-24 84.4 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD68158.1 - 3.1e-20 72.7 0.0 8.4e-20 71.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68158.1 - 4.1e-16 59.1 0.0 6.3e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HTH_5 PF01022.20 AJD68158.1 - 2.1e-15 56.3 1.3 7.1e-15 54.6 0.3 2.3 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family Methyltransf_12 PF08242.12 AJD68158.1 - 4.1e-14 53.1 0.0 9.1e-14 52.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD68158.1 - 6.9e-14 52.0 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AJD68158.1 - 2.1e-09 37.1 0.0 4.6e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family HTH_20 PF12840.7 AJD68158.1 - 2.6e-09 37.0 3.7 2.6e-09 37.0 3.7 2.9 3 1 0 3 3 2 1 Helix-turn-helix domain NodS PF05401.11 AJD68158.1 - 5.8e-08 32.6 0.0 8.7e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MarR_2 PF12802.7 AJD68158.1 - 1.2e-07 31.5 2.7 4.7e-07 29.6 2.7 2.0 1 0 0 1 1 1 1 MarR family MTS PF05175.14 AJD68158.1 - 8.9e-07 28.6 0.0 1.5e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 AJD68158.1 - 3.7e-06 26.7 0.0 6.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW HTH_24 PF13412.6 AJD68158.1 - 7.6e-06 25.4 0.5 3.4e-05 23.3 0.2 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AJD68158.1 - 1e-05 25.3 0.1 2.8e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Methyltransf_2 PF00891.18 AJD68158.1 - 0.00075 18.9 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 AJD68158.1 - 0.00084 19.2 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Rrf2 PF02082.20 AJD68158.1 - 0.0015 18.8 0.1 0.013 15.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 AJD68158.1 - 0.0044 16.8 1.1 0.012 15.4 1.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain RrnaAD PF00398.20 AJD68158.1 - 0.0075 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 AJD68158.1 - 0.0079 15.2 0.0 0.015 14.2 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.19 AJD68158.1 - 0.012 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_Crp_2 PF13545.6 AJD68158.1 - 0.014 15.4 0.8 0.048 13.6 0.3 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF742 PF05331.11 AJD68158.1 - 0.017 14.9 0.5 0.13 12.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF742) MarR PF01047.22 AJD68158.1 - 0.018 15.0 0.2 0.056 13.4 0.2 1.8 1 0 0 1 1 1 0 MarR family NNMT_PNMT_TEMT PF01234.17 AJD68158.1 - 0.02 14.1 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family DREV PF05219.12 AJD68158.1 - 0.023 13.8 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_32 PF13679.6 AJD68158.1 - 0.031 14.2 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 AJD68158.1 - 0.063 11.8 0.0 0.093 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HTH_34 PF13601.6 AJD68158.1 - 0.071 13.3 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.6 AJD68158.1 - 0.089 13.3 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Pox_MCEL PF03291.16 AJD68158.1 - 0.11 11.6 0.0 0.79 8.8 0.0 2.2 2 1 0 2 2 2 0 mRNA capping enzyme HTH_27 PF13463.6 AJD68158.1 - 0.12 12.9 0.4 0.33 11.5 0.1 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_37 PF13744.6 AJD68158.1 - 0.12 12.3 0.2 0.6 10.1 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DprA_WH PF17782.1 AJD68158.1 - 0.31 11.2 6.2 0.11 12.6 1.8 2.6 2 1 0 2 2 2 0 DprA winged helix domain Acyl-CoA_dh_1 PF00441.24 AJD68159.1 - 2.7e-49 167.2 7.3 4.6e-49 166.5 7.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AJD68159.1 - 1.8e-30 105.9 0.1 4.4e-30 104.6 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AJD68159.1 - 3.6e-26 91.2 0.0 7.7e-26 90.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AJD68159.1 - 1.1e-24 87.2 3.2 2e-24 86.4 3.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PUA PF01472.20 AJD68159.1 - 0.4 10.7 3.6 0.63 10.0 0.1 2.9 3 1 1 4 4 4 0 PUA domain Lipase_GDSL_2 PF13472.6 AJD68160.1 - 2.8e-45 154.9 1.7 4.4e-23 82.6 0.0 2.5 3 0 0 3 3 3 2 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 AJD68160.1 - 3.6e-14 53.2 0.0 9.9e-08 32.2 0.0 2.4 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.6 AJD68160.1 - 0.00035 20.8 0.0 0.82 9.8 0.0 3.0 2 1 1 3 3 3 2 GDSL-like Lipase/Acylhydrolase family RNB PF00773.19 AJD68161.1 - 9.2e-103 344.0 0.0 1.2e-102 343.6 0.0 1.1 1 0 0 1 1 1 1 RNB domain OB_RNB PF08206.11 AJD68161.1 - 9.7e-23 79.6 0.4 3.5e-22 77.8 0.2 2.1 2 0 0 2 2 2 1 Ribonuclease B OB domain CSD2 PF17876.1 AJD68161.1 - 3.3e-22 78.4 0.0 9.5e-20 70.5 0.1 2.4 2 0 0 2 2 2 2 Cold shock domain S1 PF00575.23 AJD68161.1 - 6.5e-12 45.6 1.0 2.1e-11 44.0 0.1 2.3 3 0 0 3 3 3 1 S1 RNA binding domain HTH_20 PF12840.7 AJD68161.1 - 0.0031 17.5 0.3 0.0079 16.2 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 AJD68161.1 - 0.0043 17.0 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain RNase_II_C_S1 PF18614.1 AJD68161.1 - 0.026 14.5 0.5 0.093 12.7 0.1 2.2 2 0 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain HTH_24 PF13412.6 AJD68161.1 - 0.13 11.9 0.1 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GFA PF04828.14 AJD68162.1 - 5.4e-19 68.3 0.0 7.6e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.6 AJD68162.1 - 0.023 14.6 0.2 0.023 14.6 0.2 2.7 4 0 0 4 4 4 0 Nudix N-terminal NMD3 PF04981.13 AJD68162.1 - 0.051 13.0 0.5 0.13 11.7 0.0 1.7 1 1 1 2 2 2 0 NMD3 family SpoU_methylase PF00588.19 AJD68163.1 - 1.8e-39 135.2 0.0 2.5e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 AJD68163.1 - 3.5e-13 49.6 0.1 8.8e-13 48.3 0.1 1.7 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding GGDEF PF00990.21 AJD68164.1 - 6.6e-44 149.5 0.1 6.6e-44 149.5 0.1 1.8 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Reg_prop PF07494.11 AJD68164.1 - 5.4e-40 130.3 17.4 0.0023 18.0 0.0 13.8 14 0 0 14 14 14 10 Two component regulator propeller Y_Y_Y PF07495.13 AJD68164.1 - 4.7e-15 55.3 0.0 1.2e-14 54.0 0.0 1.7 2 0 0 2 2 2 1 Y_Y_Y domain DUF5074 PF16819.5 AJD68164.1 - 0.00049 20.1 0.0 12 6.0 0.0 5.3 8 0 0 8 8 8 1 Domain of unknown function (DUF5074) MSC PF09402.10 AJD68164.1 - 0.021 14.3 1.6 0.032 13.7 1.6 1.1 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain SGL PF08450.12 AJD68164.1 - 0.18 11.3 2.3 19 4.7 0.0 4.7 2 2 2 5 5 5 0 SMP-30/Gluconolactonase/LRE-like region RNase_T PF00929.24 AJD68165.1 - 3.7e-24 86.1 0.0 4.4e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 AJD68165.1 - 0.00056 19.9 0.2 0.0044 17.0 0.2 1.9 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like RcnB PF11776.8 AJD68166.1 - 4.1e-19 68.4 0.7 9.3e-19 67.2 0.7 1.6 1 0 0 1 1 1 1 Nickel/cobalt transporter regulator CDC45 PF02724.14 AJD68166.1 - 3.5 5.8 5.8 3.7 5.7 5.8 1.0 1 0 0 1 1 1 0 CDC45-like protein PhoU PF01895.19 AJD68167.1 - 8.7e-37 125.5 12.4 6e-19 68.3 3.5 2.1 2 0 0 2 2 2 2 PhoU domain DUF1829 PF08862.10 AJD68167.1 - 0.016 15.7 1.3 0.12 12.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF1829 ABC_tran PF00005.27 AJD68168.1 - 7.9e-33 113.9 0.0 1.2e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD68168.1 - 1e-12 48.5 0.1 3.6e-06 27.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD68168.1 - 1.5e-07 31.1 0.1 4e-06 26.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AJD68168.1 - 6.8e-05 23.2 0.1 0.00036 20.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AJD68168.1 - 0.00031 20.6 0.0 0.00043 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 AJD68168.1 - 0.00037 20.5 0.0 0.00058 19.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 AJD68168.1 - 0.00041 20.0 0.0 0.00073 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD68168.1 - 0.00049 20.5 0.2 0.0021 18.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 AJD68168.1 - 0.00065 20.3 0.0 0.00099 19.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AJD68168.1 - 0.00073 19.5 0.0 0.002 18.0 0.0 1.7 2 0 0 2 2 1 1 RsgA GTPase AAA_30 PF13604.6 AJD68168.1 - 0.0011 18.7 0.1 0.18 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 AJD68168.1 - 0.012 15.5 0.0 0.26 11.2 0.0 2.2 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 AJD68168.1 - 0.013 15.1 0.1 0.055 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AJD68168.1 - 0.018 13.9 0.0 2.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 AJD68168.1 - 0.035 14.5 0.1 0.54 10.7 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 AJD68168.1 - 0.059 12.8 0.0 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_5 PF07728.14 AJD68168.1 - 0.079 13.0 0.3 0.29 11.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 AJD68168.1 - 0.095 12.4 0.1 8.6 6.1 0.0 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein Adeno_IVa2 PF02456.15 AJD68168.1 - 0.096 11.5 0.0 0.35 9.6 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_33 PF13671.6 AJD68168.1 - 0.1 12.7 0.1 0.19 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 AJD68168.1 - 0.12 12.2 0.1 0.82 9.5 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 AJD68168.1 - 0.16 11.7 0.1 0.45 10.2 0.0 1.8 3 0 0 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 AJD68169.1 - 2.2e-20 73.2 16.7 2.2e-20 73.2 16.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 AJD68170.1 - 2e-14 53.8 19.0 2e-14 53.8 19.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 AJD68171.1 - 7.5e-60 203.0 8.4 1e-59 202.5 8.4 1.0 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 AJD68171.1 - 4.2e-07 29.3 0.1 1.7e-06 27.3 0.1 2.0 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 AJD68171.1 - 0.0015 18.3 2.1 0.0041 16.9 1.8 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 AJD68172.1 - 7.4e-61 206.3 8.6 9.9e-61 205.9 8.6 1.0 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 AJD68172.1 - 1.2e-07 31.0 1.5 1.3e-07 31.0 0.1 1.8 2 1 0 2 2 2 1 PBP superfamily domain SBP_bac_11 PF13531.6 AJD68172.1 - 2e-05 24.5 1.7 2e-05 24.5 1.7 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Porin_O_P PF07396.11 AJD68173.1 - 1.6e-99 333.5 9.0 1.8e-99 333.3 9.0 1.0 1 0 0 1 1 1 1 Phosphate-selective porin O and P Pro_CA PF00484.19 AJD68175.1 - 9e-53 178.7 0.1 1.1e-52 178.5 0.1 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Peptidase_M19 PF01244.21 AJD68175.1 - 0.097 11.8 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) Sulfate_transp PF00916.20 AJD68176.1 - 6.4e-56 189.7 25.3 8.4e-56 189.3 25.3 1.1 1 0 0 1 1 1 1 Sulfate permease family STAS_2 PF13466.6 AJD68176.1 - 2e-07 31.3 0.2 1e-06 29.0 0.2 2.3 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 AJD68176.1 - 4.2e-06 27.1 8.2 4.2e-06 27.1 8.2 4.3 4 2 0 4 4 4 1 Molybdate transporter of MFS superfamily FUN14 PF04930.15 AJD68176.1 - 1.3 9.5 5.4 5.5 7.5 2.3 3.3 4 0 0 4 4 4 0 FUN14 family HCO3_cotransp PF00955.21 AJD68176.1 - 3.8 6.2 13.4 47 2.6 7.5 3.0 2 1 0 2 2 2 0 HCO3- transporter family HhH-GPD PF00730.25 AJD68177.1 - 1.5e-18 67.2 0.0 2.5e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 AJD68177.1 - 2.5e-08 33.4 0.0 5.2e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 AJD68177.1 - 0.0008 19.7 5.5 0.0015 18.8 5.5 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III ECH_1 PF00378.20 AJD68179.1 - 2.8e-67 226.6 0.2 3.2e-67 226.5 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD68179.1 - 7.1e-43 147.4 0.7 1.4e-39 136.5 0.6 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase FKBP_N PF01346.18 AJD68180.1 - 3.2e-23 82.5 4.6 5.1e-23 81.8 4.6 1.3 1 0 0 1 1 1 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FKBP_C PF00254.28 AJD68180.1 - 1.4e-07 31.7 0.0 3.9e-07 30.3 0.0 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF1885 PF08968.10 AJD68180.1 - 0.062 13.4 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1885) DUF1289 PF06945.13 AJD68181.1 - 1.5e-18 66.3 0.3 2.6e-18 65.5 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1289) NUDIX PF00293.28 AJD68181.1 - 2e-12 47.3 0.1 5.7e-12 45.8 0.0 1.7 2 0 0 2 2 2 1 NUDIX domain Rhodanese PF00581.20 AJD68182.1 - 1.2e-27 96.5 0.0 8.9e-17 61.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF1684 PF07920.11 AJD68183.1 - 9.2e-42 142.6 0.0 1.7e-41 141.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Yop-YscD_cpl PF16697.5 AJD68183.1 - 0.0044 17.3 0.0 0.0083 16.4 0.0 1.5 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Glyco_hydro_65C PF03633.15 AJD68183.1 - 0.15 11.9 0.4 2.5 8.1 0.1 2.8 3 1 1 4 4 4 0 Glycosyl hydrolase family 65, C-terminal domain DUF2559 PF10832.8 AJD68183.1 - 0.21 11.7 1.1 0.8 9.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2559) Amidase_2 PF01510.25 AJD68184.1 - 5.2e-22 78.6 0.1 6.4e-22 78.4 0.1 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase MOSC PF03473.17 AJD68185.1 - 3e-07 30.5 0.0 7.8e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 MOSC domain Abhydrolase_6 PF12697.7 AJD68186.1 - 2.1e-05 25.3 3.5 2.6e-05 24.9 3.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family UPF0227 PF05728.12 AJD68186.1 - 2.3e-05 24.4 0.0 0.00035 20.6 0.0 2.1 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0227) Hydrolase_4 PF12146.8 AJD68186.1 - 0.00035 19.9 0.0 0.00051 19.4 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Acetyltransf_1 PF00583.25 AJD68187.1 - 4.5e-10 39.8 0.0 5.8e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AJD68187.1 - 2.3e-08 34.3 0.0 3.2e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AJD68187.1 - 2.2e-07 31.0 0.0 4e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJD68187.1 - 0.00011 22.1 0.0 0.0002 21.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD68187.1 - 0.00014 21.8 0.3 0.00053 19.9 0.3 2.0 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.6 AJD68187.1 - 0.0079 16.3 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase ABC_tran PF00005.27 AJD68188.1 - 2.5e-37 128.4 0.4 3.8e-17 63.1 0.0 3.3 3 1 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 AJD68188.1 - 2.2e-19 70.4 5.1 1.5e-06 28.2 0.1 4.2 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD68188.1 - 1.8e-16 60.2 0.1 6.4e-05 22.5 0.1 4.3 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD68188.1 - 1e-07 32.5 8.6 4.4e-06 27.2 2.1 3.3 1 1 2 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 AJD68188.1 - 1.3e-07 32.0 1.6 0.0061 16.8 0.0 3.8 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.6 AJD68188.1 - 5.2e-06 26.1 0.1 0.11 12.3 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 AJD68188.1 - 1.3e-05 25.2 0.0 0.12 12.1 0.0 2.8 4 0 0 4 4 4 2 AAA ATPase domain SbcCD_C PF13558.6 AJD68188.1 - 4.1e-05 23.7 0.0 0.37 11.0 0.0 3.4 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 AJD68188.1 - 4.9e-05 23.3 0.1 0.15 12.0 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_18 PF13238.6 AJD68188.1 - 6.6e-05 23.5 0.0 0.84 10.2 0.0 3.9 3 1 1 4 4 4 1 AAA domain NACHT PF05729.12 AJD68188.1 - 6.8e-05 22.8 0.6 0.099 12.6 0.0 2.9 3 0 0 3 3 3 2 NACHT domain AAA_23 PF13476.6 AJD68188.1 - 8e-05 23.2 0.1 0.4 11.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain AAA PF00004.29 AJD68188.1 - 0.00032 21.1 0.0 1.1 9.7 0.0 3.2 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD68188.1 - 0.00054 20.0 0.9 0.39 10.7 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 AJD68188.1 - 0.00054 20.0 0.0 1.3 9.1 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase RNA_helicase PF00910.22 AJD68188.1 - 0.0013 19.0 0.0 2.2 8.7 0.0 2.3 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 AJD68188.1 - 0.0062 16.1 0.0 0.55 9.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 AJD68188.1 - 0.027 13.8 0.6 2.4 7.5 0.1 2.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 AJD68188.1 - 0.028 14.6 7.0 1.6 8.9 0.0 3.6 3 1 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 AJD68188.1 - 0.042 13.6 0.1 4.1 7.1 0.0 2.9 3 0 0 3 3 3 0 IstB-like ATP binding protein NB-ARC PF00931.22 AJD68188.1 - 0.043 13.0 0.1 3.6 6.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain CLP1_P PF16575.5 AJD68188.1 - 0.11 12.3 0.0 13 5.6 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF87 PF01935.17 AJD68188.1 - 0.18 11.9 0.1 5.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_25 PF13481.6 AJD68188.1 - 0.24 11.0 6.5 0.95 9.0 0.1 3.2 3 2 0 3 3 3 0 AAA domain ABC_tran_Xtn PF12848.7 AJD68188.1 - 6 7.0 11.5 0.035 14.1 1.9 2.1 2 0 0 2 2 1 0 ABC transporter AAA_28 PF13521.6 AJD68188.1 - 8.1 6.7 0.0 8.1 6.7 0.0 3.7 3 1 0 3 3 2 0 AAA domain UPF0020 PF01170.18 AJD68189.1 - 1.1e-44 152.5 0.0 1.1e-39 136.2 0.0 3.1 3 1 0 3 3 3 2 Putative RNA methylase family UPF0020 Methyltrans_SAM PF10672.9 AJD68189.1 - 2.5e-15 56.4 0.0 4.1e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.15 AJD68189.1 - 4.7e-14 52.4 0.1 8.7e-11 41.8 0.0 3.5 4 0 0 4 4 4 1 Conserved hypothetical protein 95 MTS PF05175.14 AJD68189.1 - 1.3e-12 47.6 0.0 2.1e-06 27.4 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase small domain THUMP PF02926.17 AJD68189.1 - 3.7e-11 43.3 0.0 3.8e-10 40.0 0.0 2.3 2 0 0 2 2 2 1 THUMP domain Methyltransf_25 PF13649.6 AJD68189.1 - 1.2e-10 42.0 0.4 2.1e-06 28.3 0.0 3.2 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68189.1 - 3.3e-09 36.7 0.1 0.00055 19.8 0.0 3.1 3 0 0 3 3 3 2 Methyltransferase domain PrmA PF06325.13 AJD68189.1 - 8.3e-07 28.7 2.2 0.0094 15.4 0.0 2.6 3 0 0 3 3 3 2 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 AJD68189.1 - 3.1e-06 27.7 0.0 0.00056 20.5 0.0 2.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 AJD68189.1 - 4.6e-05 23.1 0.0 0.21 11.2 0.0 2.4 2 0 0 2 2 2 2 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 AJD68189.1 - 0.0069 15.7 0.0 2.4 7.4 0.0 3.1 2 1 0 2 2 2 1 N-6 DNA Methylase DUF4136 PF13590.6 AJD68189.1 - 0.1 13.2 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4136) NAD_kinase PF01513.21 AJD68190.1 - 4e-17 62.4 0.0 5.1e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase 5-nucleotidase PF06189.12 AJD68191.1 - 8.2e-107 356.1 0.0 1.2e-106 355.5 0.0 1.2 1 0 0 1 1 1 1 5'-nucleotidase DUF2939 PF11159.8 AJD68192.1 - 4.5e-25 87.9 0.0 7.1e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2939) DUF2461 PF09365.10 AJD68193.1 - 6.8e-59 199.3 0.7 7.7e-59 199.1 0.7 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein (DUF2461) TelA PF05816.11 AJD68193.1 - 0.28 10.2 0.0 0.39 9.7 0.0 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Exonuc_X-T_C PF08411.10 AJD68194.1 - 3.3e-91 305.1 0.0 4.1e-91 304.8 0.0 1.1 1 0 0 1 1 1 1 Exonuclease C-terminal RNase_T PF00929.24 AJD68194.1 - 3.1e-23 83.1 0.0 5.5e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 Exonuclease FAD_binding_3 PF01494.19 AJD68195.1 - 7.9e-25 87.8 1.4 3.4e-24 85.8 1.4 1.9 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AJD68195.1 - 2.2e-08 34.2 1.3 4.1e-06 26.9 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AJD68195.1 - 3.9e-07 30.0 0.7 0.0015 18.2 0.4 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 AJD68195.1 - 0.0031 18.0 0.0 0.0066 17.0 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 AJD68195.1 - 0.023 13.7 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox_2 PF07992.14 AJD68195.1 - 0.024 13.9 0.0 0.063 12.5 0.0 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AJD68195.1 - 0.05 12.7 0.0 0.1 11.7 0.0 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 AJD68195.1 - 0.059 12.4 0.3 0.15 11.1 0.3 1.7 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 AJD68195.1 - 0.11 12.4 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 AJD68195.1 - 0.14 10.9 0.1 0.2 10.3 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein ApbA PF02558.16 AJD68195.1 - 0.17 11.5 0.9 0.24 11.0 0.2 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Aminotran_5 PF00266.19 AJD68196.1 - 6.8e-10 38.4 0.0 1.5e-09 37.4 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 AJD68196.1 - 0.048 13.0 0.2 0.095 12.0 0.1 1.5 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family FUSC_2 PF13515.6 AJD68197.1 - 6.3e-18 65.1 32.4 1.7e-17 63.7 14.4 2.5 2 0 0 2 2 2 2 Fusaric acid resistance protein-like FUSC PF04632.12 AJD68197.1 - 2e-17 63.0 62.9 1.2e-14 53.8 24.1 2.3 2 1 0 2 2 2 2 Fusaric acid resistance protein family FUSC-like PF12805.7 AJD68197.1 - 9.1e-10 38.1 28.8 8e-06 25.1 8.9 3.3 2 1 0 3 3 3 3 FUSC-like inner membrane protein yccS CcmD PF04995.14 AJD68197.1 - 0.014 15.5 2.0 0.014 15.5 2.0 4.6 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) DUF4381 PF14316.6 AJD68197.1 - 0.16 12.2 12.7 0.053 13.8 0.8 3.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4381) ALMT PF11744.8 AJD68197.1 - 0.29 9.9 7.4 0.56 9.0 7.4 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter ArAE_1 PF06081.11 AJD68197.1 - 2.4 8.3 12.5 1.3 9.2 4.6 2.7 2 1 0 2 2 2 0 Aromatic acid exporter family member 1 3-HAO PF06052.12 AJD68198.1 - 8.5e-76 252.7 0.0 9.8e-76 252.5 0.0 1.0 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_2 PF07883.11 AJD68198.1 - 3e-08 33.3 0.0 6.5e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AJD68198.1 - 0.0011 18.9 0.0 0.0015 18.4 0.0 1.4 1 1 0 1 1 1 1 AraC-like ligand binding domain zf-ribbon_3 PF13248.6 AJD68198.1 - 0.0049 16.2 2.6 0.94 9.0 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Cupin_1 PF00190.22 AJD68198.1 - 0.011 15.3 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Cupin DZR PF12773.7 AJD68198.1 - 0.013 15.5 0.2 0.026 14.6 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin_2 PF18073.1 AJD68198.1 - 0.017 14.8 4.5 1.1 9.0 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-IS66 PF13005.7 AJD68198.1 - 0.018 15.5 0.4 1.7 9.1 0.1 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.9 AJD68198.1 - 0.02 15.0 0.8 3.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Sec23_Sec24 PF04810.15 AJD68198.1 - 0.042 13.9 0.8 1.8 8.7 0.1 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_10 PF10058.9 AJD68198.1 - 0.1 12.4 1.2 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 AJD68198.1 - 0.41 10.4 4.3 8.2 6.3 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 AJD68198.1 - 0.53 9.9 5.8 3.7 7.2 0.1 2.8 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 AJD68198.1 - 0.61 9.8 6.2 4.1 7.2 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 AJD68198.1 - 1.1 9.3 4.2 16 5.5 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal Pro_CA PF00484.19 AJD68199.1 - 8.2e-50 169.1 3.5 1.1e-49 168.8 3.5 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Glyco_hydro_108 PF05838.12 AJD68200.1 - 1.3e-25 89.7 0.0 2.7e-25 88.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl hydrolase 108 PG_binding_3 PF09374.10 AJD68200.1 - 2e-14 53.6 0.1 3.1e-14 53.0 0.1 1.3 1 0 0 1 1 1 1 Predicted Peptidoglycan domain DUF2589 PF11655.8 AJD68201.1 - 2e-25 89.9 0.0 3.5e-25 89.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2589) DUF2589 PF11655.8 AJD68202.1 - 2.7e-48 164.1 0.0 3.1e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2589) PA-IIL PF07472.11 AJD68202.1 - 0.091 13.1 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Fucose-binding lectin II (PA-IIL) DUF3301 PF11743.8 AJD68204.1 - 0.12 12.0 1.0 4.1 7.1 0.9 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3301) DUF3325 PF11804.8 AJD68205.1 - 0.034 14.3 1.1 0.034 14.3 1.1 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3325) ABC2_membrane_3 PF12698.7 AJD68206.1 - 0.069 12.2 0.9 0.096 11.8 0.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3087 PF11286.8 AJD68206.1 - 0.11 11.9 0.1 0.18 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) GerE PF00196.19 AJD68208.1 - 1.4e-17 62.9 0.6 2.8e-17 62.0 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 AJD68208.1 - 3.3e-17 62.7 0.0 5.4e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4_2 PF08281.12 AJD68208.1 - 3.6e-07 29.8 0.1 1.1e-06 28.2 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 AJD68208.1 - 8.1e-06 25.5 1.0 2.4e-05 24.0 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD68208.1 - 0.00014 21.3 0.3 0.0003 20.2 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AJD68208.1 - 0.00036 20.2 0.1 0.0013 18.5 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 AJD68208.1 - 0.0018 18.3 0.1 0.006 16.6 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.6 AJD68208.1 - 0.002 18.6 0.1 0.0045 17.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 AJD68208.1 - 0.0028 17.7 0.1 0.0061 16.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 AJD68208.1 - 0.033 14.3 0.2 0.13 12.4 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 AJD68208.1 - 0.035 13.7 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 AJD68208.1 - 0.036 13.7 0.1 0.093 12.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Rep_fac_C PF08542.11 AJD68208.1 - 0.057 13.8 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Replication factor C C-terminal domain RIP PF00161.19 AJD68209.1 - 8.5e-05 22.2 0.0 0.00027 20.6 0.0 1.7 1 1 0 1 1 1 1 Ribosome inactivating protein FMN_bind_2 PF04299.12 AJD68211.1 - 7.8e-38 129.8 0.0 1.1e-37 129.3 0.0 1.2 1 0 0 1 1 1 1 Putative FMN-binding domain Pyridox_ox_2 PF12900.7 AJD68211.1 - 0.011 15.7 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase KOW PF00467.29 AJD68211.1 - 0.21 11.6 0.0 0.36 10.9 0.0 1.4 1 0 0 1 1 1 0 KOW motif DUF3149 PF11346.8 AJD68213.1 - 0.028 14.1 0.4 0.067 12.8 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) tRNA-synt_2 PF00152.20 AJD68215.1 - 3e-80 269.7 0.0 3.5e-80 269.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 AJD68215.1 - 7.9e-10 38.6 0.1 2.1e-09 37.3 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 AJD68215.1 - 0.0046 16.5 0.0 0.73 9.3 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA_int_endo PF01974.17 AJD68215.1 - 0.023 14.7 0.3 7.4 6.7 0.3 2.8 2 0 0 2 2 2 0 tRNA intron endonuclease, catalytic C-terminal domain Fe-S_biosyn PF01521.20 AJD68216.1 - 8e-17 61.4 0.0 9e-17 61.3 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Ribosomal_S6 PF01250.17 AJD68217.1 - 5.6e-26 90.7 0.0 7.1e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6 Ribosomal_S18 PF01084.20 AJD68218.1 - 1.3e-24 86.2 0.2 1.6e-24 85.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S18 Phage_int_SAM_5 PF13102.6 AJD68218.1 - 0.024 15.0 0.1 0.027 14.8 0.1 1.1 1 0 0 1 1 1 0 Phage integrase SAM-like domain Toxin_trans PF07952.12 AJD68218.1 - 0.091 11.8 0.0 0.091 11.8 0.0 1.0 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain Ribosomal_L9_C PF03948.14 AJD68219.1 - 3.3e-21 75.6 0.1 4.8e-21 75.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L9, C-terminal domain Ribosomal_L9_N PF01281.19 AJD68219.1 - 6.9e-21 73.5 0.2 1.4e-20 72.6 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain Rotamase PF00639.21 AJD68219.1 - 0.043 14.8 0.1 0.066 14.2 0.1 1.3 1 0 0 1 1 1 0 PPIC-type PPIASE domain SMC_N PF02463.19 AJD68220.1 - 1.8e-67 227.0 0.0 3e-67 226.3 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AJD68220.1 - 5.5e-15 56.0 1.7 6e-07 29.6 0.1 3.1 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AJD68220.1 - 4.6e-14 53.4 20.1 4.6e-14 53.4 20.1 5.9 2 2 1 3 3 3 1 AAA domain AAA_15 PF13175.6 AJD68220.1 - 2.7e-10 40.5 0.2 2.5e-09 37.3 0.0 2.6 3 0 0 3 3 3 1 AAA ATPase domain AAA_29 PF13555.6 AJD68220.1 - 6e-05 22.7 0.0 0.00013 21.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_hinge PF06470.13 AJD68220.1 - 0.00015 22.0 0.0 0.00066 20.0 0.0 2.1 1 1 0 1 1 1 1 SMC proteins Flexible Hinge Domain YscO PF07321.12 AJD68220.1 - 0.00088 19.3 17.8 0.00088 19.3 17.8 9.0 4 2 5 9 9 9 1 Type III secretion protein YscO ABC_tran PF00005.27 AJD68220.1 - 0.018 15.6 0.0 0.018 15.6 0.0 5.8 4 2 0 4 4 4 0 ABC transporter Baculo_PEP_C PF04513.12 AJD68220.1 - 9.3 6.3 37.2 0.19 11.7 0.5 6.8 6 2 1 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZipA_C PF04354.13 AJD68221.1 - 4.3e-37 126.8 0.0 5.4e-37 126.5 0.0 1.1 1 0 0 1 1 1 1 ZipA, C-terminal FtsZ-binding domain MatC_N PF07158.11 AJD68222.1 - 0.063 13.3 3.8 0.049 13.6 2.6 1.5 1 1 0 1 1 1 0 Dicarboxylate carrier protein MatC N-terminus DUF4713 PF15831.5 AJD68222.1 - 0.19 12.2 0.0 0.19 12.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4713) CitMHS PF03600.16 AJD68222.1 - 1.1 8.4 5.6 1.8 7.7 5.6 1.4 1 1 0 1 1 1 0 Citrate transporter DUF1270 PF06900.11 AJD68222.1 - 1.5 9.3 6.1 7.6 7.0 1.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) Aminotran_1_2 PF00155.21 AJD68223.1 - 1.4e-34 119.9 0.0 1.7e-34 119.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CytB6-F_Fe-S PF08802.10 AJD68223.1 - 0.099 12.7 0.7 0.63 10.1 0.1 2.7 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit PsbQ PF05757.11 AJD68223.1 - 0.23 11.2 1.1 0.46 10.2 1.1 1.5 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) DNA_ligase_aden PF01653.18 AJD68224.1 - 6.6e-121 403.3 0.0 9.5e-121 402.7 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 AJD68224.1 - 1.1e-33 114.9 4.8 2.4e-33 113.8 4.8 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 AJD68224.1 - 5.8e-20 71.2 0.0 1.7e-13 50.4 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif BRCT PF00533.26 AJD68224.1 - 6.5e-13 48.9 0.0 1.2e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 AJD68224.1 - 3.7e-12 46.0 3.9 1e-11 44.6 3.9 1.8 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_5 PF14520.6 AJD68224.1 - 9.7e-08 32.5 0.9 0.035 14.7 0.0 4.2 4 1 0 4 4 4 2 Helix-hairpin-helix domain PTCB-BRCT PF12738.7 AJD68224.1 - 1.3e-05 25.1 0.1 2.7e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 twin BRCT domain tRNA-synt_2 PF00152.20 AJD68225.1 - 5.9e-35 120.8 0.0 2.4e-34 118.8 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) DUF3011 PF11218.8 AJD68226.1 - 1.3e-89 299.4 22.9 1.5e-89 299.2 22.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3011) IF-2B PF01008.17 AJD68227.1 - 3.5e-75 252.8 0.0 4.2e-75 252.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DNA_topoisoIV PF00521.20 AJD68228.1 - 3.7e-154 513.7 0.0 4.7e-154 513.4 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 AJD68228.1 - 1.8e-82 270.7 8.3 2.3e-16 59.0 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller SIS PF01380.22 AJD68228.1 - 0.068 13.0 0.0 0.26 11.1 0.0 2.0 2 0 0 2 2 2 0 SIS domain PLC-beta_C PF08703.10 AJD68228.1 - 0.32 10.9 2.3 0.4 10.7 0.3 2.2 2 0 0 2 2 2 0 PLC-beta C terminal PQQ PF01011.21 AJD68229.1 - 5.4e-35 117.7 4.2 2.8e-06 27.0 0.0 7.9 7 0 0 7 7 7 7 PQQ enzyme repeat PQQ_2 PF13360.6 AJD68229.1 - 4.9e-22 78.7 1.0 7.8e-08 32.2 0.2 3.8 3 1 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 AJD68229.1 - 2.1e-06 28.0 29.1 0.27 11.8 0.4 9.1 7 4 0 7 7 7 5 PQQ-like domain ATP-synt_D PF01813.17 AJD68230.1 - 0.017 14.9 0.1 0.023 14.6 0.1 1.3 1 0 0 1 1 1 0 ATP synthase subunit D GAS PF13851.6 AJD68230.1 - 0.026 13.9 3.1 0.038 13.3 3.1 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Prefoldin_2 PF01920.20 AJD68230.1 - 0.095 12.7 1.8 0.41 10.6 2.4 1.7 2 0 0 2 2 2 0 Prefoldin subunit DHR10 PF18595.1 AJD68230.1 - 0.14 12.2 8.4 0.35 10.9 8.4 1.6 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain IFT57 PF10498.9 AJD68230.1 - 0.23 10.4 1.4 0.36 9.7 1.4 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 TMF_DNA_bd PF12329.8 AJD68230.1 - 1.9 8.5 6.4 3.2 7.8 6.4 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Urocanase_C PF17392.2 AJD68231.1 - 7.6e-92 306.1 0.5 1.5e-91 305.1 0.5 1.5 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 AJD68231.1 - 2.2e-84 282.3 0.0 3.1e-84 281.9 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 AJD68231.1 - 5.5e-61 203.9 0.0 1.1e-60 202.9 0.0 1.5 1 0 0 1 1 1 1 Urocanase N-terminal domain FGase PF05013.12 AJD68232.1 - 2.9e-66 223.8 0.0 3.5e-66 223.5 0.0 1.1 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase Lyase_aromatic PF00221.19 AJD68233.1 - 3.4e-180 599.7 16.7 3.9e-180 599.5 16.7 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_3 PF07969.11 AJD68234.1 - 6.8e-17 62.1 7.2 3.3e-14 53.2 6.0 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 AJD68234.1 - 1.8e-13 50.6 3.4 2.3e-12 46.9 3.4 2.4 1 1 0 1 1 1 1 Amidohydrolase family DUF3225 PF11533.8 AJD68234.1 - 0.028 14.1 0.1 0.085 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3225) Amidohydro_1 PF01979.20 AJD68235.1 - 9.4e-28 97.5 0.0 1.1e-27 97.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family UTRA PF07702.13 AJD68236.1 - 1.2e-26 93.3 0.1 1.9e-26 92.6 0.1 1.4 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 AJD68236.1 - 2e-19 69.0 0.0 6.9e-19 67.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 AJD68236.1 - 0.00038 20.4 0.0 0.0007 19.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_41 PF14502.6 AJD68236.1 - 0.0072 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 AJD68236.1 - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 AJD68236.1 - 0.017 15.0 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 AJD68236.1 - 0.083 13.0 0.0 0.23 11.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Mrr_cat PF04471.12 AJD68237.1 - 3.6e-07 30.2 0.0 8.6e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 Restriction endonuclease Plasmid_stab_B PF10784.9 AJD68237.1 - 0.23 11.3 2.3 0.5 10.2 2.3 1.5 1 0 0 1 1 1 0 Plasmid stability protein FAP PF07174.11 AJD68237.1 - 1.4 8.3 21.7 2.1 7.7 21.7 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) HemY_N PF07219.13 AJD68238.1 - 0.051 13.8 2.2 0.063 13.5 2.2 1.1 1 0 0 1 1 1 0 HemY protein N-terminus ECSCR PF15820.5 AJD68238.1 - 0.08 12.8 2.7 0.096 12.5 2.7 1.2 1 0 0 1 1 1 0 Endothelial cell-specific chemotaxis regulator DUF3357 PF11837.8 AJD68238.1 - 0.092 13.2 0.6 0.11 13.0 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF5305 PF17231.2 AJD68238.1 - 0.096 12.1 0.1 0.11 11.9 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Orf78 PF06024.12 AJD68238.1 - 0.21 11.9 1.8 0.25 11.6 1.8 1.1 1 0 0 1 1 1 0 Orf78 (ac78) TraE PF05309.11 AJD68238.1 - 0.25 10.7 2.6 0.3 10.5 2.6 1.1 1 0 0 1 1 1 0 TraE protein Pex24p PF06398.11 AJD68238.1 - 0.36 9.8 2.2 0.39 9.7 2.2 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Phasin PF05597.11 AJD68239.1 - 4.5e-40 136.6 4.8 4.5e-40 136.6 4.8 1.3 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF883 PF05957.13 AJD68239.1 - 0.0038 17.8 15.0 0.011 16.3 1.0 2.5 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF883) CENP-Q PF13094.6 AJD68239.1 - 0.0051 17.0 2.5 0.6 10.3 0.2 2.2 2 0 0 2 2 2 2 CENP-Q, a CENPA-CAD centromere complex subunit Apolipoprotein PF01442.18 AJD68239.1 - 0.0078 16.1 16.3 0.03 14.2 16.3 1.8 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Goodbye PF17109.5 AJD68239.1 - 0.013 15.9 0.5 0.17 12.3 0.1 2.2 2 0 0 2 2 2 0 fungal STAND N-terminal Goodbye domain DUF812 PF05667.11 AJD68239.1 - 0.032 13.1 2.2 0.037 12.9 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc19 PF08287.11 AJD68239.1 - 0.043 13.7 1.9 0.046 13.6 0.4 1.7 2 0 0 2 2 2 0 Spc19 SPATA1_C PF15743.5 AJD68239.1 - 0.061 13.4 3.0 0.12 12.5 3.0 1.5 1 1 0 1 1 1 0 Spermatogenesis-associated C-terminus Csm1_N PF18504.1 AJD68239.1 - 0.13 12.7 2.6 0.43 11.0 0.8 2.2 2 0 0 2 2 2 0 Csm1 N-terminal domain Reovirus_Mu2 PF07781.11 AJD68239.1 - 0.17 10.2 0.0 0.2 10.0 0.0 1.0 1 0 0 1 1 1 0 Reovirus minor core protein Mu-2 Spore_III_AB PF09548.10 AJD68239.1 - 0.54 10.3 3.2 0.45 10.6 0.5 1.9 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Spc7 PF08317.11 AJD68239.1 - 2.2 7.1 6.4 4.2 6.2 6.4 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein THOC7 PF05615.13 AJD68239.1 - 2.3 8.5 9.8 6.4 7.1 9.7 1.8 1 1 0 1 1 1 0 Tho complex subunit 7 DUF4407 PF14362.6 AJD68239.1 - 3.2 7.0 11.6 7.9 5.7 11.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) YtxH PF12732.7 AJD68239.1 - 6.3 7.4 9.6 17 6.0 6.3 2.8 1 1 0 1 1 1 0 YtxH-like protein PHA_gran_rgn PF09650.10 AJD68240.1 - 5.1e-29 100.4 0.1 5.6e-29 100.2 0.1 1.0 1 0 0 1 1 1 1 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) Yop-YscD_cpl PF16697.5 AJD68241.1 - 2.1e-18 66.4 0.1 3.6e-16 59.3 0.1 2.2 2 0 0 2 2 2 2 Inner membrane component of T3SS, cytoplasmic domain FHA PF00498.26 AJD68241.1 - 3.6e-13 49.7 0.0 6.4e-11 42.4 0.0 2.3 2 0 0 2 2 2 2 FHA domain DUF2917 PF11142.8 AJD68241.1 - 0.017 14.5 0.6 0.1 12.0 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2917) Pirin_C_2 PF17954.1 AJD68241.1 - 0.069 13.3 0.0 1 9.6 0.0 2.5 2 1 1 3 3 3 0 Quercetinase C-terminal cupin domain Ferric_reduct PF01794.19 AJD68242.1 - 2.9e-19 69.4 9.7 2.9e-19 69.4 9.7 2.0 3 0 0 3 3 3 1 Ferric reductase like transmembrane component TPR_21 PF09976.9 AJD68242.1 - 0.0044 16.8 1.1 0.31 10.7 0.3 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat-like domain Oxidored_molyb PF00174.19 AJD68243.1 - 2e-33 115.4 0.0 2.9e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Aminotran_5 PF00266.19 AJD68244.1 - 9.5e-50 169.6 0.0 1.1e-49 169.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V PDT PF00800.18 AJD68245.1 - 2.6e-59 200.1 0.0 4.9e-59 199.2 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydratase CM_2 PF01817.21 AJD68245.1 - 1e-21 77.1 0.9 6.5e-21 74.5 0.7 2.2 2 0 0 2 2 2 1 Chorismate mutase type II ACT PF01842.25 AJD68245.1 - 4e-12 45.7 0.0 8e-12 44.7 0.0 1.5 1 0 0 1 1 1 1 ACT domain Ead_Ea22 PF13935.6 AJD68245.1 - 0.018 15.7 0.5 1.4 9.6 0.1 2.4 2 0 0 2 2 2 0 Ead/Ea22-like protein EPSP_synthase PF00275.20 AJD68246.1 - 3.2e-117 391.8 0.1 3.6e-117 391.6 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Harakiri PF15196.6 AJD68246.1 - 0.093 13.2 0.4 0.4 11.2 0.1 2.2 2 0 0 2 2 2 0 Activator of apoptosis harakiri TonB_C PF03544.14 AJD68247.1 - 3.9e-17 62.5 0.0 6e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AJD68247.1 - 0.091 13.0 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 TonB C terminal TonB_C PF03544.14 AJD68248.1 - 7.4e-24 84.0 0.0 1.4e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AJD68248.1 - 0.00055 20.1 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 TonB C terminal tRNA-synt_2b PF00587.25 AJD68249.1 - 1.7e-33 116.1 0.0 2.6e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 AJD68249.1 - 2.4e-30 104.9 0.2 3.6e-30 104.4 0.2 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Flavodoxin_2 PF02525.17 AJD68250.1 - 1.3e-46 158.9 0.0 1.4e-46 158.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 AJD68250.1 - 7.5e-12 45.3 0.0 9.1e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase LysR_substrate PF03466.20 AJD68251.1 - 2.8e-40 137.9 4.6 3.4e-40 137.6 2.7 1.8 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD68251.1 - 4e-16 58.7 0.1 7.7e-16 57.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 AJD68251.1 - 0.11 12.6 0.2 1.6 8.9 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AJD68255.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68255.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68255.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD68255.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD68255.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD68255.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD68255.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD68255.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68255.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD68255.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD68255.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD68255.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD68255.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD68255.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD68255.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD68255.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD68255.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD68255.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD68255.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD68255.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD68255.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD68256.1 - 2.7e-32 111.5 0.3 5e-32 110.6 0.1 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD68256.1 - 1.1e-14 54.3 1.9 3.3e-14 52.7 1.9 1.8 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD68256.1 - 2.4e-12 46.8 0.1 4.4e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD68256.1 - 2.2e-10 40.1 0.0 1.2e-09 37.8 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD68256.1 - 2.5e-05 24.5 0.0 3.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AJD68256.1 - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF1175 PF06672.11 AJD68257.1 - 0.23 11.1 0.0 0.24 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1175) Herpes_ori_bp PF02399.15 AJD68258.1 - 1.2e-05 23.6 0.0 3.1e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 Origin of replication binding protein Toprim_3 PF13362.6 AJD68258.1 - 2.8e-05 24.4 0.2 0.00014 22.2 0.2 2.4 1 0 0 1 1 1 1 Toprim domain Phage_integrase PF00589.22 AJD68259.1 - 2.4e-15 56.8 0.0 4.4e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 AJD68259.1 - 2.4e-09 37.4 0.4 5.6e-09 36.2 0.4 1.7 1 0 0 1 1 1 1 Arm DNA-binding domain DUF488 PF04343.13 AJD68260.1 - 3.5e-29 101.9 0.0 4.5e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 MCPsignal PF00015.21 AJD68261.1 - 8.6e-50 168.9 17.6 8.6e-50 168.9 17.6 4.7 5 1 1 6 6 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 AJD68261.1 - 6.4e-21 74.7 1.1 6.4e-21 74.7 1.1 4.0 5 0 0 5 5 5 1 Four helix bundle sensory module for signal transduction HAMP_N3 PF18575.1 AJD68261.1 - 9.6e-16 57.1 0.1 1.2e-13 50.4 0.0 3.6 3 0 0 3 3 3 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68261.1 - 1.4e-07 31.7 16.5 9.8e-07 29.1 3.2 6.2 6 0 0 6 6 6 1 HAMP domain BLOC1_2 PF10046.9 AJD68261.1 - 0.11 12.8 14.4 3.1 8.1 0.2 5.4 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAT PF03127.14 AJD68261.1 - 0.23 11.8 5.5 2.2 8.6 0.1 4.3 4 0 0 4 4 4 0 GAT domain TMPIT PF07851.13 AJD68261.1 - 1 8.5 5.0 9 5.4 0.2 3.4 3 0 0 3 3 3 0 TMPIT-like protein IFT57 PF10498.9 AJD68261.1 - 2.1 7.2 13.5 0.44 9.5 0.1 3.7 4 1 0 4 4 4 0 Intra-flagellar transport protein 57 Imm7 PF15585.6 AJD68261.1 - 4.5 7.6 7.2 41 4.5 0.0 4.7 4 1 1 5 5 5 0 Immunity protein 7 Plk4_PB2 PF18409.1 AJD68261.1 - 8.1 7.2 6.4 74 4.1 0.1 4.0 4 0 0 4 4 4 0 Polo-like Kinase 4 Polo Box 2 KxDL PF10241.9 AJD68261.1 - 8.2 6.8 12.1 8 6.8 0.0 4.9 4 1 1 5 5 5 0 Uncharacterized conserved protein DUF3810 PF12725.7 AJD68261.1 - 8.7 5.6 6.7 14 4.9 0.0 3.9 3 2 0 4 4 4 0 Protein of unknown function (DUF3810) FAD_binding_3 PF01494.19 AJD68262.1 - 6.6e-21 74.9 2.2 8.4e-21 74.6 2.2 1.1 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 AJD68262.1 - 1.3e-05 24.7 0.1 0.031 13.6 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.24 AJD68262.1 - 3.1e-05 23.7 7.9 0.0096 15.5 3.7 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD68262.1 - 0.00037 20.7 0.2 0.0017 18.6 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 AJD68262.1 - 0.00086 18.6 0.6 0.15 11.2 0.1 2.4 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 AJD68262.1 - 0.062 12.1 0.8 3.2 6.5 0.0 2.4 3 0 0 3 3 3 0 Tryptophan halogenase Pyr_redox PF00070.27 AJD68262.1 - 0.072 13.7 0.0 0.31 11.6 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase MarR PF01047.22 AJD68263.1 - 2.4e-07 30.6 0.1 6.1e-07 29.3 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AJD68263.1 - 4.2e-05 23.9 0.0 8.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 AJD68263.1 - 0.00019 21.2 0.0 0.00089 19.1 0.0 2.1 2 0 0 2 2 2 1 MarR family PAS_4 PF08448.10 AJD68264.1 - 2.8e-37 127.3 6.0 3.3e-10 40.2 0.2 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 AJD68264.1 - 3.7e-26 91.4 0.0 3.6e-12 46.4 0.0 4.3 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 AJD68264.1 - 2.6e-21 75.7 0.0 8.7e-14 51.5 0.1 4.6 4 0 0 4 4 4 2 PAS fold PAS_3 PF08447.12 AJD68264.1 - 3.8e-19 68.8 0.0 1.1e-10 41.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 AJD68264.1 - 6.5e-19 68.5 0.0 2e-18 66.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD68264.1 - 8e-16 58.2 0.0 2e-15 57.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 AJD68264.1 - 1.2e-10 41.1 0.3 2.4e-06 27.4 0.0 3.6 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 AJD68264.1 - 4.7e-10 39.3 11.4 7.4e-10 38.7 0.4 4.3 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain HPTransfase PF10090.9 AJD68264.1 - 0.002 17.9 0.1 0.0075 16.1 0.0 2.0 2 0 0 2 2 2 1 Histidine phosphotransferase C-terminal domain PAS_10 PF13596.6 AJD68264.1 - 0.014 16.0 0.0 16 6.2 0.0 4.0 4 0 0 4 4 4 0 PAS domain PAS_7 PF12860.7 AJD68264.1 - 0.054 13.7 0.2 0.29 11.3 0.0 2.4 2 0 0 2 2 2 0 PAS fold PAS_11 PF14598.6 AJD68264.1 - 0.13 12.4 0.0 30 4.8 0.0 2.7 3 0 0 3 3 3 0 PAS domain Response_reg PF00072.24 AJD68265.1 - 3.4e-20 72.3 0.0 3.8e-20 72.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ATPase PF06745.13 AJD68266.1 - 5.7e-67 225.4 0.0 1.7e-34 119.2 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 AJD68266.1 - 5.3e-15 55.5 0.3 2.4e-06 27.3 0.1 2.7 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 AJD68266.1 - 5.9e-10 39.8 0.5 0.0014 19.1 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain RecA PF00154.21 AJD68266.1 - 7.7e-10 38.7 0.0 0.00012 21.7 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein Rad51 PF08423.11 AJD68266.1 - 1.1e-08 34.7 0.0 0.00058 19.2 0.0 2.3 2 0 0 2 2 2 2 Rad51 GvpD PF07088.11 AJD68266.1 - 1.5e-08 33.8 0.1 3.9e-06 25.8 0.0 3.0 3 0 0 3 3 3 1 GvpD gas vesicle protein NACHT PF05729.12 AJD68266.1 - 2.2e-08 34.2 0.9 0.00075 19.4 0.0 2.5 2 1 0 2 2 2 2 NACHT domain IstB_IS21 PF01695.17 AJD68266.1 - 2.5e-08 33.8 0.0 0.017 14.8 0.0 3.4 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_24 PF13479.6 AJD68266.1 - 1.3e-07 31.5 0.0 0.0021 17.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain MEDS PF14417.6 AJD68266.1 - 1.8e-07 31.2 0.0 0.016 15.1 0.0 2.3 2 0 0 2 2 2 2 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_22 PF13401.6 AJD68266.1 - 6.3e-07 29.8 0.3 0.026 14.8 0.0 2.7 2 2 0 2 2 2 2 AAA domain DnaB_C PF03796.15 AJD68266.1 - 1.8e-06 27.5 0.0 0.0047 16.3 0.0 2.9 2 1 1 3 3 3 2 DnaB-like helicase C terminal domain DUF2075 PF09848.9 AJD68266.1 - 9e-06 25.2 0.0 0.11 11.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 AJD68266.1 - 4e-05 23.3 0.5 0.19 11.5 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_14 PF13173.6 AJD68266.1 - 8.1e-05 22.7 0.0 0.27 11.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 AJD68266.1 - 0.00015 21.6 0.0 0.22 11.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 AJD68266.1 - 0.00015 21.1 0.0 0.028 13.7 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin PhoH PF02562.16 AJD68266.1 - 0.00022 20.8 0.2 0.045 13.2 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein cobW PF02492.19 AJD68266.1 - 0.00035 20.2 0.1 0.34 10.5 0.0 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 AJD68266.1 - 0.00046 20.4 0.0 0.45 10.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 AJD68266.1 - 0.00048 20.7 0.0 1.7 9.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.13 AJD68266.1 - 0.00052 19.3 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 1 TIP49 P-loop domain Zot PF05707.12 AJD68266.1 - 0.00055 19.6 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA PF00004.29 AJD68266.1 - 0.001 19.5 0.0 1.1 9.7 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 AJD68266.1 - 0.0012 19.2 0.0 1.1 9.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 AJD68266.1 - 0.002 18.2 0.0 1.5 8.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 AJD68266.1 - 0.0024 17.8 0.0 0.41 10.5 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 AJD68266.1 - 0.0031 17.1 0.0 1.4 8.4 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 AJD68266.1 - 0.0037 16.2 0.0 0.16 10.8 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 AJD68266.1 - 0.0047 16.7 0.1 2.2 8.0 0.1 3.4 3 1 0 4 4 4 1 DEAD/DEAH box helicase AAA_11 PF13086.6 AJD68266.1 - 0.017 14.9 0.0 7 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.9 AJD68266.1 - 0.017 14.3 0.0 3.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Mg_chelatase PF01078.21 AJD68266.1 - 0.019 14.4 0.1 7.8 5.8 0.0 2.6 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI Roc PF08477.13 AJD68266.1 - 0.021 15.0 0.0 3.1 8.1 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 AJD68266.1 - 0.022 14.8 1.0 1.2 9.1 0.1 2.6 2 1 1 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 AJD68266.1 - 0.024 13.7 0.1 0.5 9.4 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP-synt_ab PF00006.25 AJD68266.1 - 0.029 14.0 0.0 7 6.2 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain APS_kinase PF01583.20 AJD68266.1 - 0.036 14.0 0.1 1 9.2 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase NB-ARC PF00931.22 AJD68266.1 - 0.037 13.2 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain ABC_tran PF00005.27 AJD68266.1 - 0.041 14.4 0.2 4.7 7.7 0.0 2.5 2 0 0 2 2 2 0 ABC transporter Viral_helicase1 PF01443.18 AJD68266.1 - 0.042 13.6 0.0 5.3 6.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 AJD68266.1 - 0.046 13.6 0.0 9.4 6.1 0.0 2.4 2 0 0 2 2 2 0 NTPase CobU PF02283.16 AJD68266.1 - 0.11 12.0 0.1 1.8 8.1 0.0 2.7 3 0 0 3 3 3 0 Cobinamide kinase / cobinamide phosphate guanyltransferase RuvB_N PF05496.12 AJD68266.1 - 0.13 12.0 0.1 7.1 6.4 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 AJD68266.1 - 0.14 12.5 0.0 21 5.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.17 AJD68266.1 - 0.16 11.7 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 AJD68266.1 - 0.17 12.4 0.2 30 5.0 0.2 2.3 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 AJD68266.1 - 0.25 10.8 0.0 0.59 9.5 0.0 1.5 2 0 0 2 2 1 0 RecF/RecN/SMC N terminal domain PAXNEB PF05625.11 AJD68266.1 - 0.64 9.1 4.0 5.8 6.0 0.1 2.9 3 0 0 3 3 3 0 PAXNEB protein PAS_4 PF08448.10 AJD68267.1 - 2e-21 76.3 0.7 6.4e-21 74.7 0.2 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 AJD68267.1 - 2.7e-20 72.9 0.0 5.9e-20 71.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD68267.1 - 3e-16 59.6 0.0 8.3e-16 58.2 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 AJD68267.1 - 5.3e-10 39.3 0.0 1.3e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 AJD68267.1 - 3.2e-07 30.3 0.4 3.2e-07 30.3 0.4 3.7 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 AJD68267.1 - 3.6e-07 30.8 0.0 8.1e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 AJD68267.1 - 2.3e-06 27.8 0.0 5.3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain FleQ PF06490.11 AJD68267.1 - 0.00028 21.2 0.0 0.34 11.3 0.0 2.7 2 0 0 2 2 2 2 Flagellar regulatory protein FleQ PAS_3 PF08447.12 AJD68267.1 - 0.00047 20.4 0.0 0.0016 18.7 0.0 2.0 2 0 0 2 2 2 1 PAS fold HPTransfase PF10090.9 AJD68267.1 - 0.0041 16.9 0.1 0.034 13.9 0.0 2.5 1 1 1 2 2 2 1 Histidine phosphotransferase C-terminal domain TPR_2 PF07719.17 AJD68268.1 - 7e-06 25.8 0.9 0.0079 16.2 0.1 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD68268.1 - 0.0081 16.9 0.4 0.0081 16.9 0.4 3.9 3 3 2 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.6 AJD68268.1 - 0.02 15.5 6.4 0.34 11.6 1.2 3.8 3 1 0 3 3 3 0 Tetratricopeptide repeat DUF4131 PF13567.6 AJD68268.1 - 0.047 13.4 2.1 0.086 12.5 2.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2840 PF11000.8 AJD68268.1 - 0.049 13.4 0.3 3.9 7.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2840) TPR_8 PF13181.6 AJD68268.1 - 0.077 13.3 0.0 0.21 11.9 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_19 PF14559.6 AJD68268.1 - 0.088 13.3 6.0 2.2 8.9 0.3 2.8 1 1 2 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 AJD68268.1 - 0.093 12.6 0.5 0.31 10.9 0.0 2.1 3 0 0 3 3 3 0 Tetratricopeptide repeat CcmH PF03918.14 AJD68269.1 - 1.7e-47 160.3 0.0 2.1e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein Redoxin PF08534.10 AJD68270.1 - 5.8e-16 58.5 0.0 7e-16 58.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AJD68270.1 - 2.4e-15 56.6 0.0 2.9e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 AJD68270.1 - 0.15 12.1 0.0 3.6 7.6 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin CcmF_C PF16327.5 AJD68271.1 - 7.3e-115 383.7 1.7 7.3e-115 383.7 1.7 2.1 2 0 0 2 2 2 1 Cytochrome c-type biogenesis protein CcmF C-terminal Cytochrom_C_asm PF01578.20 AJD68271.1 - 4.3e-52 177.0 17.8 1.5e-51 175.2 17.8 1.9 1 0 0 1 1 1 1 Cytochrome C assembly protein ResB PF05140.14 AJD68271.1 - 9.8e-05 21.3 0.2 0.068 11.9 0.0 2.3 1 1 1 2 2 2 2 ResB-like family CcmE PF03100.15 AJD68272.1 - 5.7e-44 149.2 0.0 6.7e-44 149.0 0.0 1.1 1 0 0 1 1 1 1 CcmE CcmD PF04995.14 AJD68273.1 - 1.3e-14 54.0 5.4 1.8e-14 53.5 5.4 1.2 1 0 0 1 1 1 1 Heme exporter protein D (CcmD) DUF4637 PF15470.6 AJD68273.1 - 0.17 11.6 0.1 0.18 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4637) Cytochrom_C_asm PF01578.20 AJD68274.1 - 6.5e-28 98.0 17.9 1e-27 97.3 17.9 1.3 1 0 0 1 1 1 1 Cytochrome C assembly protein DUF2231 PF09990.9 AJD68274.1 - 6.1 7.3 20.1 0.029 14.8 8.4 2.5 1 1 2 3 3 3 0 Predicted membrane protein (DUF2231) Peptidase_S8 PF00082.22 AJD68275.1 - 5.6e-28 98.1 5.4 4e-17 62.4 0.7 2.5 1 1 1 2 2 2 2 Subtilase family SelB-wing_2 PF09106.11 AJD68275.1 - 0.029 14.6 0.5 18 5.6 0.0 3.1 3 0 0 3 3 3 0 Elongation factor SelB, winged helix zf-HC2 PF13490.6 AJD68276.1 - 1.2e-05 25.5 0.9 2.8e-05 24.3 0.3 2.0 2 0 0 2 2 2 1 Putative zinc-finger RskA PF10099.9 AJD68276.1 - 1.2 9.4 17.5 2.9 8.1 17.5 1.7 1 1 0 1 1 1 0 Anti-sigma-K factor rskA Sigma70_r4_2 PF08281.12 AJD68277.1 - 1.5e-11 43.8 0.0 2.4e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD68277.1 - 5.2e-11 41.9 0.0 9.1e-11 41.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD68277.1 - 3e-08 33.3 0.1 4e-07 29.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 AJD68277.1 - 2.2e-06 27.7 0.0 0.0001 22.2 0.0 2.1 2 0 0 2 2 2 1 ECF sigma factor CT_C_D PF02682.16 AJD68277.1 - 0.0057 16.4 0.0 0.0073 16.1 0.0 1.1 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D Cytochrom_C PF00034.21 AJD68280.1 - 4e-09 37.5 0.1 7.8e-09 36.6 0.1 1.5 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AJD68280.1 - 1.7e-05 25.0 0.7 0.0004 20.6 0.7 2.1 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III FixO PF02433.15 AJD68280.1 - 0.15 11.5 0.0 0.8 9.1 0.0 1.9 2 0 0 2 2 2 0 Cytochrome C oxidase, mono-heme subunit/FixO Ni_hydr_CYTB PF01292.20 AJD68282.1 - 8.2e-22 77.7 14.7 1e-21 77.4 14.7 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Mntp PF02659.15 AJD68282.1 - 0.93 9.2 4.7 1 9.1 0.2 2.5 2 1 1 3 3 3 0 Putative manganese efflux pump FdtA PF05523.11 AJD68283.1 - 1e-45 154.7 0.0 1.1e-45 154.5 0.0 1.0 1 0 0 1 1 1 1 WxcM-like, C-terminal Hexapep PF00132.24 AJD68284.1 - 1.7e-17 62.3 10.2 2e-07 30.5 0.4 3.6 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD68284.1 - 8.6e-06 25.4 7.6 0.03 14.1 0.9 3.1 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase PglD_N PF17836.1 AJD68284.1 - 0.0022 18.6 0.0 0.0049 17.5 0.0 1.6 1 0 0 1 1 1 1 PglD N-terminal domain Shikimate_DH PF01488.20 AJD68284.1 - 0.053 13.6 0.0 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Glyco_hydro_32N PF00251.20 AJD68285.1 - 0.039 13.5 0.0 1.9 8.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 32 N-terminal domain Acetyltransf_6 PF13480.7 AJD68286.1 - 6.9e-13 49.0 3.9 6.9e-13 49.0 3.9 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 AJD68286.1 - 1.9e-06 27.0 0.2 0.0043 16.0 0.0 2.2 1 1 1 2 2 2 2 FemAB family FemAB_like PF04339.12 AJD68286.1 - 0.011 14.8 0.0 0.018 14.2 0.0 1.2 1 0 0 1 1 1 0 Peptidogalycan biosysnthesis/recognition DegT_DnrJ_EryC1 PF01041.17 AJD68287.1 - 9.8e-114 380.4 0.0 1.1e-113 380.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 AJD68287.1 - 5.4e-06 25.6 0.0 7.7e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 AJD68287.1 - 0.0045 16.2 0.0 0.0063 15.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AJD68287.1 - 0.073 12.3 0.1 0.15 11.3 0.1 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase Polysacc_synt_3 PF13440.6 AJD68288.1 - 1.4e-12 47.4 11.9 1.4e-12 47.4 11.9 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 AJD68288.1 - 2.8e-12 46.6 21.6 2.8e-12 46.6 21.6 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 AJD68288.1 - 2.7e-05 24.3 27.6 0.0003 20.9 8.6 4.5 3 2 0 4 4 4 3 Polysaccharide biosynthesis C-terminal domain Glycos_transf_2 PF00535.26 AJD68289.1 - 8e-21 74.6 0.0 1.2e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD68289.1 - 1.2e-14 54.7 0.0 1.9e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 AJD68289.1 - 2.5e-10 40.3 0.0 3.2e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 VWA_3 PF13768.6 AJD68289.1 - 5.5e-05 23.1 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Glyco_trans_2_3 PF13632.6 AJD68289.1 - 0.00012 22.0 0.7 0.00019 21.4 0.7 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 AJD68289.1 - 0.036 14.6 0.0 0.073 13.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Wzz PF02706.15 AJD68291.1 - 8.9e-10 38.7 0.2 3.8e-09 36.7 0.0 2.1 2 0 0 2 2 2 1 Chain length determinant protein Takusan PF04822.13 AJD68291.1 - 0.17 11.8 0.1 6.8 6.7 0.0 2.3 2 0 0 2 2 2 0 Takusan Methyltransf_25 PF13649.6 AJD68292.1 - 3.4e-17 62.9 0.0 5.3e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD68292.1 - 2.6e-14 53.6 0.0 3.9e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD68292.1 - 3e-11 43.4 0.0 4e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68292.1 - 3.2e-11 43.2 0.0 4.5e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD68292.1 - 9e-10 39.2 0.0 1.3e-09 38.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AJD68292.1 - 1.5e-06 27.7 0.0 2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.11 AJD68292.1 - 0.00087 19.0 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 AJD68292.1 - 0.0096 15.5 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 AJD68292.1 - 0.01 15.2 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 AJD68292.1 - 0.018 14.6 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 AJD68292.1 - 0.067 12.9 0.0 0.21 11.2 0.0 1.7 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 AJD68292.1 - 0.094 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 AJD68292.1 - 0.11 11.9 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 AJD68292.1 - 0.13 11.7 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Amidohydro_1 PF01979.20 AJD68293.1 - 1.3e-12 47.7 0.1 2.7e-09 36.8 0.0 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 AJD68293.1 - 4.5e-08 33.0 5.6 1.1e-05 25.2 1.1 2.7 1 1 0 2 2 2 2 Amidohydrolase family Abhydrolase_7 PF12715.7 AJD68293.1 - 0.13 11.5 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Abhydrolase family Methyltransf_11 PF08241.12 AJD68294.1 - 1.2e-19 70.8 0.0 1.7e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD68294.1 - 4.9e-18 65.6 0.0 7.9e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68294.1 - 3.5e-15 56.1 0.0 4.3e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD68294.1 - 1.8e-12 47.4 0.1 2.3e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD68294.1 - 8e-10 39.4 0.0 1.1e-09 38.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AJD68294.1 - 3.8e-09 36.2 0.0 5.5e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 AJD68294.1 - 1.9e-06 27.0 0.0 2.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 AJD68294.1 - 3e-06 26.9 0.0 3.9e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 AJD68294.1 - 0.00018 21.4 0.0 0.0028 17.5 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 AJD68294.1 - 0.00055 19.3 0.0 0.00071 18.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 AJD68294.1 - 0.00055 19.6 0.0 0.00075 19.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 AJD68294.1 - 0.0092 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_33 PF10017.9 AJD68294.1 - 0.036 13.2 0.0 0.048 12.8 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_20 PF12147.8 AJD68294.1 - 0.062 12.4 0.0 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase Herpes_UL49_5 PF05702.11 AJD68294.1 - 0.067 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein TPMT PF05724.11 AJD68294.1 - 0.073 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_24 PF13578.6 AJD68294.1 - 0.086 13.9 0.8 0.16 13.0 0.1 1.8 2 0 0 2 2 1 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 AJD68294.1 - 0.1 11.8 0.0 0.24 10.5 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family FtsJ PF01728.19 AJD68294.1 - 0.12 12.5 0.0 0.17 12.0 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 AJD68294.1 - 0.19 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Glycos_transf_1 PF00534.20 AJD68295.1 - 1.9e-14 53.5 0.0 2.7e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD68295.1 - 1.3e-13 51.6 0.1 3e-13 50.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AJD68295.1 - 5e-07 29.9 3.5 5e-07 29.9 3.5 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 AJD68295.1 - 0.0019 18.3 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 AJD68295.1 - 0.039 14.3 0.0 0.16 12.4 0.0 2.0 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_18 PF15024.6 AJD68295.1 - 0.26 9.8 0.0 0.36 9.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 18 Glycos_transf_1 PF00534.20 AJD68296.1 - 8.1e-24 84.1 0.0 1.2e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD68296.1 - 8.8e-20 71.5 1.3 1.6e-19 70.7 0.6 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD68296.1 - 7.8e-10 39.4 10.3 7.8e-10 39.4 10.3 2.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AJD68296.1 - 0.0041 17.5 0.0 0.0088 16.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 NTP_transf_5 PF14907.6 AJD68297.1 - 1.4e-29 103.5 1.7 2.3e-29 102.8 1.7 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase T3SS_needle_E PF08988.10 AJD68297.1 - 0.11 12.7 2.0 0.45 10.7 2.0 2.1 1 0 0 1 1 1 0 Type III secretion system, cytoplasmic E component of needle Radical_SAM PF04055.21 AJD68298.1 - 5e-15 56.3 0.0 8.9e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 AJD68298.1 - 4.8e-08 33.1 0.0 4.9e-06 26.6 0.0 2.7 2 0 0 2 2 2 2 B12 binding domain Hpr_kinase_C PF07475.12 AJD68299.1 - 1.4e-05 24.7 0.3 2.1e-05 24.1 0.3 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain ATPase PF06745.13 AJD68299.1 - 0.0016 17.8 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_29 PF13555.6 AJD68299.1 - 0.0021 17.7 0.1 0.015 15.0 0.1 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD68299.1 - 0.0073 16.7 0.3 0.02 15.3 0.2 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 AJD68299.1 - 0.031 13.9 0.1 0.083 12.5 0.1 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 AJD68299.1 - 0.057 13.9 0.1 0.094 13.2 0.1 1.3 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 AJD68299.1 - 0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 AJD68300.1 - 1.6e-18 67.6 0.0 3.1e-18 66.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AJD68300.1 - 1.4e-08 34.5 0.0 2.6e-05 23.8 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 AJD68300.1 - 2.6e-06 27.3 0.7 2.6e-06 27.3 0.7 1.5 2 0 0 2 2 1 1 ABC transporter transmembrane region AAA_16 PF13191.6 AJD68300.1 - 0.00021 21.7 2.2 0.00031 21.2 0.4 2.2 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD68300.1 - 0.00051 20.0 0.0 0.00099 19.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 AJD68300.1 - 0.00064 19.4 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD68300.1 - 0.0014 18.9 0.2 0.017 15.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 AJD68300.1 - 0.0023 17.8 0.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 AJD68300.1 - 0.0026 17.9 0.3 0.073 13.3 0.3 2.7 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 AJD68300.1 - 0.022 14.5 1.7 0.54 10.0 1.7 2.4 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AJD68300.1 - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.25 AJD68300.1 - 0.17 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sugar_tr PF00083.24 AJD68301.1 - 6.6e-30 104.4 23.2 8.3e-30 104.0 23.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AJD68301.1 - 8e-22 77.6 56.7 8.8e-14 51.2 32.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AJD68301.1 - 2.1e-06 27.3 13.5 2.1e-06 27.3 13.5 2.4 3 0 0 3 3 3 1 Uncharacterised MFS-type transporter YbfB Bac_luciferase PF00296.20 AJD68302.1 - 1.2e-32 113.6 9.3 2.5e-32 112.6 9.3 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase Pyrid_ox_like PF16242.5 AJD68303.1 - 1.7e-51 173.7 0.0 1.9e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Putative_PNPOx PF01243.20 AJD68303.1 - 3.5e-17 62.4 0.1 5.1e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase ExoD PF06055.12 AJD68304.1 - 1.8e-46 157.8 11.9 2.1e-46 157.6 11.9 1.0 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD DUF21 PF01595.20 AJD68305.1 - 3.8e-47 160.2 4.2 5.5e-47 159.7 4.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 AJD68305.1 - 1.8e-20 72.7 0.0 3.8e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 AJD68305.1 - 2e-10 40.9 0.0 2.6e-06 27.8 0.0 2.7 2 0 0 2 2 2 2 CBS domain UPF0016 PF01169.19 AJD68305.1 - 0.004 17.5 2.5 0.0096 16.2 0.2 2.5 1 1 1 2 2 2 1 Uncharacterized protein family UPF0016 PhoU_div PF01865.16 AJD68306.1 - 1.8e-05 24.2 3.3 3.5e-05 23.2 3.3 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF47 PHO4 PF01384.20 AJD68307.1 - 9.6e-81 271.4 43.0 3.4e-80 269.6 43.0 1.7 1 1 0 1 1 1 1 Phosphate transporter family HTH_IclR PF09339.10 AJD68307.1 - 0.054 13.3 0.2 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain Pilin_N PF07790.11 AJD68307.1 - 0.37 11.7 14.4 0.33 11.9 2.0 3.0 2 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal DUF218 PF02698.17 AJD68308.1 - 1.7e-26 92.8 0.0 2.3e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 DUF218 domain Peptidase_S10 PF00450.22 AJD68309.1 - 1.2e-19 71.1 0.0 3.9e-19 69.3 0.0 1.7 1 1 0 1 1 1 1 Serine carboxypeptidase Abhydrolase_6 PF12697.7 AJD68309.1 - 0.0022 18.6 2.8 0.032 14.8 2.8 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DNA_gyraseB PF00204.25 AJD68310.1 - 5.3e-37 127.0 0.0 1.4e-36 125.6 0.0 1.7 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.21 AJD68310.1 - 1.9e-23 82.4 0.5 4e-23 81.4 0.5 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 AJD68310.1 - 1.9e-16 60.5 0.1 5.2e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 AJD68310.1 - 6.4e-11 42.4 0.0 1.4e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 AJD68310.1 - 0.00028 20.7 0.0 0.00054 19.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPRIM_C PF16898.5 AJD68310.1 - 0.0025 18.1 0.0 0.0044 17.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal associated domain of TOPRIM CTP_synth_N PF06418.14 AJD68312.1 - 4.5e-121 403.2 0.0 5.9e-121 402.8 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 AJD68312.1 - 5.3e-53 179.6 0.0 1e-52 178.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AJD68312.1 - 6e-05 22.9 0.2 0.00073 19.3 0.0 2.6 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 AJD68312.1 - 0.0012 18.9 0.0 0.0026 17.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DAHP_synth_1 PF00793.20 AJD68313.1 - 1.2e-67 227.7 0.0 1.4e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family Enolase_C PF00113.22 AJD68315.1 - 7.9e-133 442.2 0.2 1.1e-132 441.7 0.2 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 AJD68315.1 - 1.6e-56 190.1 0.0 3.2e-56 189.1 0.0 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 AJD68315.1 - 3.7e-08 33.2 0.1 1.3e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 AJD68315.1 - 5.1e-05 22.6 0.3 9.8e-05 21.6 0.3 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DivIC PF04977.15 AJD68316.1 - 3.3e-30 103.7 0.0 3.9e-30 103.4 0.0 1.1 1 0 0 1 1 1 1 Septum formation initiator NUDE_C PF04880.13 AJD68316.1 - 0.0044 17.5 0.1 0.0051 17.3 0.1 1.1 1 0 0 1 1 1 1 NUDE protein, C-terminal conserved region HALZ PF02183.18 AJD68316.1 - 0.022 15.0 0.3 0.031 14.5 0.3 1.2 1 0 0 1 1 1 0 Homeobox associated leucine zipper PikAIV_N PF18605.1 AJD68316.1 - 0.045 13.3 2.4 0.072 12.7 2.4 1.3 1 0 0 1 1 1 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain ZapB PF06005.12 AJD68316.1 - 0.049 14.1 1.9 0.068 13.6 1.9 1.1 1 0 0 1 1 1 0 Cell division protein ZapB SlyX PF04102.12 AJD68316.1 - 0.21 12.2 2.1 0.39 11.4 2.1 1.4 1 0 0 1 1 1 0 SlyX FtsL PF04999.13 AJD68316.1 - 0.47 10.5 2.0 0.34 10.9 0.2 1.7 2 0 0 2 2 2 0 Cell division protein FtsL IspD PF01128.19 AJD68317.1 - 3.5e-62 210.0 0.0 4.1e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 AJD68317.1 - 4.3e-09 36.9 3.3 5.7e-09 36.5 3.3 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain YgbB PF02542.16 AJD68318.1 - 6.3e-64 214.9 0.0 7.1e-64 214.8 0.0 1.0 1 0 0 1 1 1 1 YgbB family TruD PF01142.18 AJD68319.1 - 1.2e-56 192.3 0.0 2.9e-37 128.5 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) Smr PF01713.21 AJD68320.1 - 6.6e-22 77.7 0.2 1.2e-21 76.8 0.2 1.4 1 0 0 1 1 1 1 Smr domain SurE PF01975.17 AJD68321.1 - 4e-61 206.2 0.4 4.9e-61 205.9 0.4 1.1 1 0 0 1 1 1 1 Survival protein SurE Glyco_trans_4_4 PF13579.6 AJD68321.1 - 0.003 18.0 4.5 0.0073 16.8 4.5 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 AJD68321.1 - 0.0032 17.5 0.6 0.031 14.3 0.0 2.4 3 0 0 3 3 3 1 Glycosyltransferase Family 4 PCMT PF01135.19 AJD68322.1 - 9.5e-56 188.9 0.0 1.1e-55 188.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 AJD68322.1 - 4.2e-06 27.4 0.0 6.8e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68322.1 - 0.00015 21.6 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 AJD68322.1 - 0.0037 16.7 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_11 PF08241.12 AJD68322.1 - 0.0038 17.8 0.0 0.0066 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 AJD68322.1 - 0.0056 16.7 0.0 0.0089 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 AJD68322.1 - 0.059 13.4 0.0 0.13 12.3 0.0 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_23 PF13489.6 AJD68322.1 - 0.12 12.2 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Protoglobin PF11563.8 AJD68322.1 - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Protoglobin SAM_MT PF04445.13 AJD68322.1 - 0.17 11.3 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase RrnaAD PF00398.20 AJD68322.1 - 0.2 10.7 0.0 0.29 10.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase SNARE_assoc PF09335.11 AJD68323.1 - 4.4e-08 33.6 6.2 8.2e-08 32.8 4.8 2.0 1 1 1 2 2 2 1 SNARE associated Golgi protein Peptidase_M23 PF01551.22 AJD68324.1 - 3.5e-29 100.9 0.6 8.5e-29 99.6 0.6 1.7 1 0 0 1 1 1 1 Peptidase family M23 LysM PF01476.20 AJD68324.1 - 3.6e-16 59.0 0.5 7.4e-16 58.0 0.1 1.7 2 0 0 2 2 2 1 LysM domain Biotin_lipoyl_2 PF13533.6 AJD68324.1 - 0.014 15.2 0.8 1.6 8.6 0.1 3.4 3 0 0 3 3 3 0 Biotin-lipoyl like DUF498 PF04430.14 AJD68326.1 - 5.4e-24 84.4 0.0 6.5e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) CRS1_YhbY PF01985.21 AJD68327.1 - 1.6e-23 82.7 0.1 1.9e-23 82.4 0.1 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain FtsJ PF01728.19 AJD68328.1 - 8.6e-50 169.3 0.0 1e-49 169.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 AJD68328.1 - 0.00077 19.3 0.0 0.046 13.5 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD68328.1 - 0.009 15.9 0.0 0.044 13.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain SUV3_C PF12513.8 AJD68328.1 - 0.011 15.7 0.1 0.019 14.9 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial degradasome RNA helicase subunit C terminal Methyltransf_25 PF13649.6 AJD68328.1 - 0.013 16.2 0.2 0.054 14.2 0.2 2.2 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 AJD68328.1 - 0.089 12.4 0.0 0.14 11.8 0.0 1.5 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Peptidase_M41 PF01434.18 AJD68329.1 - 3.9e-73 245.4 0.2 5.7e-73 244.8 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 AJD68329.1 - 5.7e-47 159.4 0.0 4.2e-46 156.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 AJD68329.1 - 5.1e-14 51.8 0.0 1.5e-13 50.3 0.0 1.8 1 0 0 1 1 1 1 AAA+ lid domain FtsH_ext PF06480.15 AJD68329.1 - 4.5e-10 39.8 1.4 5.5e-10 39.6 0.1 1.8 2 0 0 2 2 2 1 FtsH Extracellular TIP49 PF06068.13 AJD68329.1 - 6.3e-06 25.6 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 AJD68329.1 - 1.6e-05 24.9 0.0 0.00011 22.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AJD68329.1 - 0.00016 22.1 1.0 0.013 15.9 0.5 3.3 2 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 AJD68329.1 - 0.00036 20.3 0.1 0.0072 16.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RuvB_N PF05496.12 AJD68329.1 - 0.0004 20.2 0.0 0.0014 18.4 0.0 1.9 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 AJD68329.1 - 0.0041 17.4 0.1 0.18 12.1 0.1 2.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 AJD68329.1 - 0.0049 16.3 0.3 0.01 15.3 0.3 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 AJD68329.1 - 0.0056 16.8 0.0 0.014 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 AJD68329.1 - 0.014 15.5 0.0 0.039 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_28 PF13521.6 AJD68329.1 - 0.031 14.5 0.0 0.47 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 AJD68329.1 - 0.037 13.3 0.3 0.43 9.8 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.6 AJD68329.1 - 0.08 13.4 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AOX PF01786.17 AJD68329.1 - 0.08 12.5 0.0 2.1 7.8 0.0 2.2 2 0 0 2 2 2 0 Alternative oxidase AAA_7 PF12775.7 AJD68329.1 - 0.09 12.3 0.2 0.27 10.8 0.2 1.8 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 AJD68329.1 - 0.094 12.8 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 AJD68329.1 - 0.099 13.2 0.1 0.26 11.8 0.1 1.6 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 AJD68329.1 - 0.11 12.2 0.0 0.41 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 AJD68329.1 - 0.11 12.1 0.0 0.33 10.7 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.16 AJD68329.1 - 0.13 11.7 0.2 0.27 10.7 0.2 1.4 1 0 0 1 1 1 0 PhoH-like protein Pterin_bind PF00809.22 AJD68330.1 - 4.5e-82 275.4 0.3 5.2e-82 275.2 0.3 1.0 1 0 0 1 1 1 1 Pterin binding enzyme IPPT PF01715.17 AJD68331.1 - 2.6e-81 272.8 0.0 3.2e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 IPP transferase AAA_16 PF13191.6 AJD68331.1 - 0.0027 18.1 2.6 0.017 15.5 2.6 2.4 1 1 0 1 1 1 1 AAA ATPase domain IPT PF01745.16 AJD68331.1 - 0.0086 15.5 0.0 0.022 14.2 0.0 1.7 2 0 0 2 2 2 1 Isopentenyl transferase Zeta_toxin PF06414.12 AJD68331.1 - 0.024 13.9 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Cytidylate_kin PF02224.18 AJD68331.1 - 0.042 13.6 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase AAA_33 PF13671.6 AJD68331.1 - 0.051 13.7 0.0 0.11 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain Hfq PF17209.3 AJD68332.1 - 7.4e-31 105.6 0.1 9e-31 105.3 0.1 1.1 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 AJD68332.1 - 0.00068 19.3 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 LSM domain GTP-bdg_N PF13167.6 AJD68333.1 - 1.5e-30 105.7 0.0 3.6e-30 104.5 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 AJD68333.1 - 1.4e-26 92.9 12.3 1.4e-26 92.9 12.3 1.8 2 0 0 2 2 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 AJD68333.1 - 3.6e-22 78.6 0.0 1.2e-21 77.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AJD68333.1 - 7.4e-09 35.3 0.0 1.3e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 AJD68333.1 - 1.9e-06 27.9 0.0 0.051 13.5 0.0 2.9 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 AJD68333.1 - 0.00042 19.9 0.0 0.074 12.6 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 AJD68333.1 - 0.0011 19.5 0.0 0.01 16.4 0.0 2.5 2 1 1 3 3 3 1 ABC transporter Dynamin_N PF00350.23 AJD68333.1 - 0.003 17.7 0.0 0.016 15.2 0.0 2.0 1 1 1 2 2 2 1 Dynamin family MMR_HSR1_Xtn PF16897.5 AJD68333.1 - 0.003 17.6 0.0 0.0053 16.8 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 AJD68333.1 - 0.0065 15.9 0.0 0.063 12.7 0.0 2.1 1 1 0 1 1 1 1 ADP-ribosylation factor family SRPRB PF09439.10 AJD68333.1 - 0.21 11.0 0.2 0.44 10.0 0.0 1.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit CinA PF02464.17 AJD68334.1 - 1.7e-57 193.3 1.7 1.9e-57 193.2 1.7 1.0 1 0 0 1 1 1 1 Competence-damaged protein ABC1 PF03109.16 AJD68335.1 - 8.9e-33 113.0 0.0 1.7e-32 112.1 0.0 1.5 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 AJD68335.1 - 0.012 15.0 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain Kinocilin PF15033.6 AJD68335.1 - 0.39 10.4 1.8 0.84 9.3 1.8 1.5 1 0 0 1 1 1 0 Kinocilin protein LexA_DNA_bind PF01726.16 AJD68336.1 - 1.8e-18 66.1 0.0 2.6e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain Peptidase_S24 PF00717.23 AJD68336.1 - 1.5e-14 53.7 0.2 2.6e-14 52.9 0.2 1.4 1 0 0 1 1 1 1 Peptidase S24-like MarR_2 PF12802.7 AJD68336.1 - 0.00014 21.6 0.2 0.00025 20.9 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AJD68336.1 - 0.00086 19.3 0.0 0.0017 18.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 AJD68336.1 - 0.0068 16.7 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_12 PF08461.10 AJD68336.1 - 0.056 13.4 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rrf2 PF02082.20 AJD68336.1 - 0.13 12.6 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RecA PF00154.21 AJD68337.1 - 1.1e-139 464.3 2.8 1.3e-139 464.1 2.8 1.0 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 AJD68337.1 - 2.9e-10 39.8 0.2 1.9e-09 37.2 0.2 1.9 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 AJD68337.1 - 6.6e-07 28.9 0.3 8.6e-06 25.3 0.3 2.4 1 1 0 1 1 1 1 KaiC ATPase_2 PF01637.18 AJD68337.1 - 8.2e-05 22.6 0.0 0.00016 21.7 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 AJD68337.1 - 8.3e-05 22.4 0.0 0.00016 21.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AJD68337.1 - 0.00077 19.1 0.6 0.017 14.7 0.6 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD68337.1 - 0.004 17.6 0.1 0.009 16.4 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_35 PF14516.6 AJD68337.1 - 0.03 13.2 0.0 0.049 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.14 AJD68337.1 - 0.035 14.0 0.0 0.22 11.4 0.0 2.1 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 AJD68337.1 - 0.12 12.8 0.0 0.25 11.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter RecX PF02631.16 AJD68338.1 - 1.3e-27 96.6 0.1 4.7e-27 94.9 0.0 1.7 1 1 1 2 2 2 2 RecX family tRNA-synt_2c PF01411.19 AJD68339.1 - 1.2e-214 713.9 0.0 1.5e-214 713.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 AJD68339.1 - 1.5e-25 90.2 3.0 3.9e-25 88.9 3.0 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 AJD68339.1 - 1.8e-17 63.1 1.2 1.8e-17 63.1 1.2 2.5 3 0 0 3 3 3 1 Threonyl and Alanyl tRNA synthetase second additional domain Snapin_Pallidin PF14712.6 AJD68339.1 - 0.093 13.2 0.1 0.25 11.8 0.0 1.7 2 0 0 2 2 2 0 Snapin/Pallidin JIP_LZII PF16471.5 AJD68339.1 - 0.1 12.8 0.3 0.24 11.6 0.3 1.5 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II NdhS PF11623.8 AJD68339.1 - 0.11 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H dehydrogenase subunit S CsrA PF02599.16 AJD68340.1 - 4.5e-27 93.8 1.6 5.1e-27 93.6 1.6 1.0 1 0 0 1 1 1 1 Global regulator protein family S1 PF00575.23 AJD68340.1 - 0.021 15.2 0.4 0.03 14.7 0.4 1.3 1 1 0 1 1 1 0 S1 RNA binding domain PAS_3 PF08447.12 AJD68341.1 - 7.6e-46 154.3 3.1 1.5e-15 57.3 0.2 3.5 3 0 0 3 3 3 3 PAS fold MCPsignal PF00015.21 AJD68341.1 - 5.1e-42 143.6 17.1 5.1e-42 143.6 17.1 3.0 3 0 0 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 AJD68341.1 - 1.1e-39 135.1 9.3 2.1e-12 47.2 0.1 4.6 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.7 AJD68341.1 - 6.9e-39 132.3 0.0 1.9e-11 44.1 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 AJD68341.1 - 1.1e-27 96.3 0.0 5.5e-09 36.0 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 AJD68341.1 - 1e-10 41.4 0.5 0.0017 18.3 0.1 3.9 3 0 0 3 3 3 3 PAS domain PAS_7 PF12860.7 AJD68341.1 - 0.00022 21.4 2.5 0.35 11.1 0.0 5.1 3 1 2 5 5 5 1 PAS fold Acid_phosphat_B PF03767.14 AJD68341.1 - 0.01 15.5 1.1 0.16 11.5 0.0 3.0 3 0 0 3 3 3 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Sec10 PF07393.11 AJD68341.1 - 0.018 13.5 0.1 0.41 9.0 0.1 2.1 2 0 0 2 2 2 0 Exocyst complex component Sec10 DUF1421 PF07223.11 AJD68341.1 - 0.069 13.0 0.2 28 4.6 0.0 3.5 2 0 0 2 2 2 0 UBA-like domain (DUF1421) SfsA_N PF17746.1 AJD68341.1 - 0.093 12.9 0.0 94 3.3 0.0 3.3 3 0 0 3 3 3 0 SfsA N-terminal OB domain Pirin PF02678.16 AJD68342.1 - 6.6e-33 112.9 1.1 9.9e-33 112.4 1.1 1.3 1 0 0 1 1 1 1 Pirin Pirin_C_2 PF17954.1 AJD68342.1 - 1.3e-26 92.5 0.1 4e-26 91.0 0.1 1.8 2 0 0 2 2 2 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 AJD68342.1 - 4.9e-07 29.4 1.2 3.8e-05 23.3 1.0 3.1 2 1 0 3 3 3 1 Cupin domain Pirin_C PF05726.13 AJD68342.1 - 0.13 12.6 0.0 2.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Pirin C-terminal cupin domain LysR_substrate PF03466.20 AJD68343.1 - 1.6e-21 76.6 3.8 3e-21 75.8 3.8 1.4 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD68343.1 - 1.2e-17 63.6 0.2 1.3e-16 60.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD68343.1 - 0.02 14.7 0.1 0.24 11.2 0.0 2.6 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain SNARE_assoc PF09335.11 AJD68344.1 - 5.8e-14 52.6 5.1 5.8e-14 52.6 5.1 2.0 2 0 0 2 2 2 1 SNARE associated Golgi protein Rhodanese PF00581.20 AJD68344.1 - 2.4e-06 28.0 0.0 5.9e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 Rhodanese-like domain 5TM-5TMR_LYT PF07694.12 AJD68344.1 - 0.12 11.9 7.7 2.3 7.7 0.3 2.5 2 1 0 2 2 2 0 5TMR of 5TMR-LYT Hydrolase_4 PF12146.8 AJD68345.1 - 8.9e-15 54.6 0.1 1.4e-14 53.9 0.1 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD68345.1 - 5.5e-09 36.0 0.2 1.1e-08 35.0 0.2 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD68345.1 - 1.2e-08 35.9 21.0 1.6e-08 35.4 21.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 AJD68345.1 - 1.5e-05 25.2 0.3 3.5e-05 24.0 0.3 1.5 1 1 0 1 1 1 1 Thioesterase domain Esterase PF00756.20 AJD68345.1 - 0.0017 18.1 0.1 0.004 16.8 0.0 1.7 1 1 1 2 2 2 1 Putative esterase Abhydrolase_5 PF12695.7 AJD68345.1 - 0.0047 16.7 0.0 0.54 10.0 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Phos_pyr_kin PF08543.12 AJD68346.1 - 5.7e-85 284.6 0.1 6.7e-85 284.4 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 AJD68346.1 - 1.9e-11 43.8 0.1 2.5e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF1275 PF06912.11 AJD68347.1 - 9.9e-34 116.9 17.9 1.2e-33 116.6 17.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) Pam17 PF08566.10 AJD68347.1 - 0.98 9.3 4.5 2.9 7.7 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 PhoH PF02562.16 AJD68349.1 - 1.9e-54 184.2 0.0 3e-54 183.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein PIN_4 PF13638.6 AJD68349.1 - 1.9e-39 134.9 0.0 3e-39 134.3 0.0 1.3 1 0 0 1 1 1 1 PIN domain AAA_30 PF13604.6 AJD68349.1 - 2.1e-08 34.1 0.0 7.1e-08 32.4 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AJD68349.1 - 0.00015 22.0 0.2 0.00073 19.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 AJD68349.1 - 0.0013 19.1 0.3 0.01 16.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 AJD68349.1 - 0.038 13.2 0.0 0.066 12.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.9 AJD68349.1 - 0.094 11.9 0.0 0.47 9.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 AJD68349.1 - 0.12 12.8 0.1 0.45 10.9 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 AJD68349.1 - 0.14 11.9 0.0 0.39 10.4 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.29 AJD68349.1 - 0.19 12.2 1.1 0.61 10.5 0.2 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AhpC-TSA PF00578.21 AJD68350.1 - 2.2e-33 114.8 0.0 2.8e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AJD68350.1 - 2.8e-16 59.6 0.0 3.2e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 AJD68350.1 - 3.2e-05 24.0 0.0 0.00017 21.7 0.0 1.9 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 AJD68350.1 - 0.00024 20.7 0.0 0.00029 20.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) RraB PF06877.11 AJD68351.1 - 1.2e-19 70.9 1.0 1.3e-19 70.8 1.0 1.0 1 0 0 1 1 1 1 Regulator of ribonuclease activity B DUF2478 PF10649.9 AJD68351.1 - 0.11 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) ACT_6 PF13740.6 AJD68352.1 - 1.8e-18 66.3 0.0 1.2e-13 50.8 0.0 2.5 2 1 0 2 2 2 2 ACT domain ACT PF01842.25 AJD68352.1 - 2.7e-07 30.3 0.1 4.1e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 AJD68352.1 - 0.00084 19.9 0.0 0.076 13.6 0.0 2.2 2 0 0 2 2 2 1 ACT domain DHDPS PF00701.22 AJD68353.1 - 2.9e-78 262.5 0.0 3.3e-78 262.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family EKLF_TAD2 PF16833.5 AJD68353.1 - 0.1 12.6 1.5 0.23 11.5 1.5 1.6 1 0 0 1 1 1 0 Erythroid krueppel-like transcription factor, transactivation 2 Lipoprotein_18 PF06804.11 AJD68354.1 - 7.9e-05 21.9 0.1 0.014 14.4 0.2 2.4 1 1 1 2 2 2 2 NlpB/DapX lipoprotein MCPVI PF02993.14 AJD68354.1 - 0.02 14.8 0.2 0.027 14.3 0.2 1.2 1 0 0 1 1 1 0 Minor capsid protein VI DUF3470 PF11953.8 AJD68355.1 - 9.2e-18 63.9 0.5 1.2e-17 63.6 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3470) Fer4 PF00037.27 AJD68355.1 - 7.4e-10 38.2 19.8 3.7e-07 29.7 5.4 3.1 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 AJD68355.1 - 1.2e-07 31.7 9.1 6.2e-05 23.0 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 AJD68355.1 - 4.8e-07 29.6 19.3 3.9e-05 23.5 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 AJD68355.1 - 3.5e-06 27.5 15.7 1.3e-05 25.7 15.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 AJD68355.1 - 4.4e-06 26.7 13.0 0.0011 19.1 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AJD68355.1 - 9.3e-06 25.4 14.6 0.0096 16.0 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 AJD68355.1 - 2.9e-05 24.1 25.5 0.00084 19.5 15.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 AJD68355.1 - 7.5e-05 23.2 8.1 0.0019 18.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 AJD68355.1 - 0.00012 22.9 13.6 0.0037 18.2 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 AJD68355.1 - 0.00084 19.7 8.5 0.012 16.1 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 AJD68355.1 - 0.012 16.1 15.3 0.093 13.3 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 AJD68355.1 - 0.015 15.8 13.5 0.027 15.0 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 AJD68355.1 - 0.22 12.5 19.2 0.96 10.5 7.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 AJD68355.1 - 3.9 8.3 12.2 1.6 9.5 3.6 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain DGOK PF05035.12 AJD68356.1 - 7e-95 317.2 0.1 7.9e-95 317.0 0.1 1.0 1 0 0 1 1 1 1 2-keto-3-deoxy-galactonokinase SGL PF08450.12 AJD68357.1 - 1e-69 234.8 0.0 1.2e-69 234.6 0.0 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region DUF5122 PF17164.4 AJD68357.1 - 0.01 16.1 0.2 0.032 14.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5122) beta-propeller MR_MLE_C PF13378.6 AJD68358.1 - 1.6e-54 184.8 0.1 2.4e-54 184.2 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AJD68358.1 - 8.1e-29 100.2 0.0 1.5e-28 99.4 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Aldolase PF01081.19 AJD68359.1 - 1.9e-23 82.9 0.4 2.4e-23 82.6 0.4 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.17 AJD68359.1 - 0.00089 18.6 0.1 0.046 13.1 0.1 2.3 1 1 1 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 AJD68359.1 - 0.098 11.8 1.2 0.82 8.8 0.2 2.1 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase LysR_substrate PF03466.20 AJD68361.1 - 8.5e-33 113.5 3.9 8.5e-33 113.5 3.9 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD68361.1 - 4.3e-17 61.8 0.5 1e-16 60.6 0.5 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Peptidase_C71 PF12386.8 AJD68361.1 - 0.066 12.9 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Pseudomurein endo-isopeptidase Pei TonB_dep_Rec PF00593.24 AJD68362.1 - 2e-29 103.8 55.2 2e-29 103.8 55.2 2.3 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD68362.1 - 6.9e-10 39.5 1.9 1.1e-09 38.8 0.3 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain TonB_dep_Rec PF00593.24 AJD68363.1 - 1.1e-41 144.3 40.0 1.1e-41 144.3 40.0 2.5 1 1 2 3 3 3 1 TonB dependent receptor Plug PF07715.15 AJD68363.1 - 2.3e-12 47.4 2.0 2.3e-12 47.4 2.0 2.8 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain Sortilin-Vps10 PF15902.5 AJD68364.1 - 1.3e-15 57.2 0.0 0.0076 15.1 0.0 5.8 3 2 4 8 8 8 6 Sortilin, neurotensin receptor 3, BNR PF02012.20 AJD68364.1 - 3.4e-07 29.3 16.2 0.98 9.7 0.0 8.1 7 1 1 8 8 8 3 BNR/Asp-box repeat PSII_BNR PF14870.6 AJD68364.1 - 0.00034 20.0 4.0 1.7 7.8 0.1 4.8 5 1 0 5 5 5 2 Photosynthesis system II assembly factor YCF48 BNR_2 PF13088.6 AJD68364.1 - 0.00059 19.2 2.6 0.47 9.7 0.3 4.2 3 2 1 4 4 4 2 BNR repeat-like domain BNR_6 PF15899.5 AJD68364.1 - 0.00096 19.0 18.1 0.093 12.8 0.0 6.4 7 0 0 7 7 7 1 BNR-Asp box repeat SASA PF03629.18 AJD68365.1 - 4e-22 79.0 0.8 2.3e-12 47.0 0.0 2.4 2 0 0 2 2 2 2 Carbohydrate esterase, sialic acid-specific acetylesterase BetaGal_dom4_5 PF13364.6 AJD68365.1 - 7.7e-09 36.1 0.9 3.5e-08 34.0 0.1 2.3 2 0 0 2 2 2 1 Beta-galactosidase jelly roll domain Glyco_hydro_2_N PF02837.18 AJD68365.1 - 9e-06 25.7 0.1 0.0001 22.2 0.0 2.4 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain tRNA_deacylase PF04414.12 AJD68365.1 - 0.19 11.3 0.0 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 D-aminoacyl-tRNA deacylase MlaC PF05494.12 AJD68365.1 - 0.26 11.0 0.7 51 3.6 0.0 3.4 4 0 0 4 4 4 0 MlaC protein DUF5597 PF18120.1 AJD68366.1 - 1.9e-32 112.2 0.0 3.4e-32 111.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5597) Glyco_hydro_35 PF01301.19 AJD68366.1 - 9e-08 32.1 0.0 0.0002 21.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 AJD68366.1 - 1.2e-06 28.2 0.1 2.3e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_31 PF01055.26 AJD68367.1 - 5.4e-127 424.6 7.5 7.5e-127 424.2 7.5 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 DUF5110 PF17137.4 AJD68367.1 - 2.2e-20 72.7 0.0 6.8e-20 71.1 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF5110) DUF4968 PF16338.5 AJD68367.1 - 1.3e-14 54.3 0.0 2.9e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4968) PA14 PF07691.12 AJD68367.1 - 1.6e-09 37.8 0.1 4.3e-09 36.3 0.1 1.7 1 0 0 1 1 1 1 PA14 domain Gal_mutarotas_2 PF13802.6 AJD68367.1 - 6.3e-05 23.2 0.2 0.00039 20.7 0.2 2.4 1 1 0 1 1 1 1 Galactose mutarotase-like TraK PF06586.11 AJD68367.1 - 0.014 15.1 0.5 0.026 14.2 0.5 1.3 1 0 0 1 1 1 0 TraK protein Glyco_hyd_65N_2 PF14498.6 AJD68368.1 - 2.7e-69 233.7 0.0 3.9e-69 233.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain FGGY_N PF00370.21 AJD68369.1 - 2.9e-55 187.5 0.0 3.8e-55 187.1 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 AJD68369.1 - 2.3e-31 109.1 5.3 2.4e-31 109.0 2.1 2.2 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain AP_endonuc_2 PF01261.24 AJD68370.1 - 0.00045 19.7 0.1 0.0017 17.9 0.0 1.8 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Sugar_tr PF00083.24 AJD68371.1 - 8.1e-110 367.8 30.5 9.3e-110 367.6 30.5 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AJD68371.1 - 9.2e-34 116.9 65.6 5.3e-32 111.1 39.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 AJD68371.1 - 2.4e-08 32.9 3.6 2.4e-08 32.9 3.6 2.4 2 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MASE1 PF05231.14 AJD68372.1 - 4.8e-35 121.2 28.3 6.1e-35 120.8 28.3 1.1 1 0 0 1 1 1 1 MASE1 CinA_KH PF18146.1 AJD68372.1 - 0.011 15.8 0.8 0.023 14.9 0.8 1.4 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain DUF2809 PF10990.8 AJD68372.1 - 9.9 6.9 8.4 0.43 11.3 0.3 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF2809) Amidase_3 PF01520.18 AJD68374.1 - 1.8e-43 148.7 0.0 3.2e-43 147.9 0.0 1.4 1 1 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase AMIN PF11741.8 AJD68374.1 - 1.3e-10 41.3 0.0 3.3e-10 39.9 0.0 1.7 2 0 0 2 2 2 1 AMIN domain DUF3215 PF11503.8 AJD68374.1 - 0.14 12.0 0.0 0.41 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) GCHY-1 PF02649.14 AJD68375.1 - 2.6e-68 230.4 0.0 2.9e-68 230.2 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 BTHB PF18410.1 AJD68375.1 - 0.15 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Basic tilted helix bundle domain PolyA_pol PF01743.20 AJD68378.1 - 8e-35 120.0 0.3 1.7e-34 119.0 0.3 1.6 1 0 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_arg_C PF12626.7 AJD68378.1 - 4.7e-33 113.8 9.9 8.3e-33 113.0 9.9 1.4 1 0 0 1 1 1 1 Polymerase A arginine-rich C-terminus PolyA_pol_RNAbd PF12627.7 AJD68378.1 - 6.6e-20 70.6 0.1 5.5e-19 67.7 0.1 2.3 2 0 0 2 2 2 1 Probable RNA and SrmB- binding site of polymerase A HPPK PF01288.20 AJD68379.1 - 9.5e-35 119.5 0.0 1.1e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Pantoate_transf PF02548.15 AJD68380.1 - 1.8e-101 338.9 0.1 2.1e-101 338.7 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 AJD68380.1 - 0.00013 21.5 2.7 0.00063 19.3 2.7 2.2 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Asp_Glu_race PF01177.22 AJD68380.1 - 0.012 15.4 0.1 0.13 12.1 0.0 2.1 1 1 0 2 2 2 0 Asp/Glu/Hydantoin racemase ComA PF02679.15 AJD68380.1 - 0.13 11.7 0.0 1.6 8.2 0.0 2.0 1 1 1 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Pantoate_ligase PF02569.15 AJD68381.1 - 1.1e-94 316.6 0.0 1.2e-94 316.4 0.0 1.0 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase Asp_decarbox PF02261.16 AJD68382.1 - 2.7e-47 159.5 0.1 3e-47 159.3 0.1 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase PGI PF00342.19 AJD68383.1 - 6.9e-151 503.1 0.0 9e-151 502.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase PhdYeFM_antitox PF02604.19 AJD68384.1 - 1.7e-09 37.3 0.0 3.7e-09 36.3 0.0 1.7 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system UL141 PF16758.5 AJD68384.1 - 0.026 14.3 0.0 0.029 14.1 0.0 1.1 1 0 0 1 1 1 0 Herpes-like virus membrane glycoprotein UL141 AAA_33 PF13671.6 AJD68385.1 - 0.00013 22.2 0.1 0.00021 21.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 AJD68385.1 - 0.007 15.7 0.6 0.039 13.2 0.6 1.9 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 AJD68385.1 - 0.029 14.8 0.6 0.048 14.1 0.6 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 AJD68385.1 - 0.03 14.8 0.1 0.035 14.6 0.1 1.5 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 AJD68385.1 - 0.07 12.7 1.7 0.089 12.4 0.8 1.6 1 1 1 2 2 2 0 AAA domain DUF839 PF05787.13 AJD68386.1 - 2.8e-16 59.8 0.2 5.9e-16 58.7 0.2 1.6 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF839) Glyco_hydro_3 PF00933.21 AJD68387.1 - 9.5e-78 261.8 0.1 1.6e-77 261.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Exop_C PF18559.1 AJD68387.1 - 3.3e-40 137.5 1.5 6.6e-40 136.5 0.4 2.1 2 0 0 2 2 2 1 Galactose-binding domain-like Glyco_hydro_3_C PF01915.22 AJD68387.1 - 3.4e-35 121.9 0.2 9e-35 120.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain SSF PF00474.17 AJD68388.1 - 5.9e-70 236.2 28.8 5.9e-70 236.2 28.8 1.7 2 0 0 2 2 2 1 Sodium:solute symporter family EAL PF00563.20 AJD68389.1 - 4.6e-72 242.4 0.0 6.9e-72 241.8 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AJD68389.1 - 6e-12 45.6 0.0 9.9e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GAF PF01590.26 AJD68389.1 - 8.2e-11 42.7 0.1 2.9e-10 40.9 0.1 2.0 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 AJD68389.1 - 5.8e-10 39.6 0.1 2.3e-09 37.7 0.1 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 AJD68389.1 - 0.0032 17.8 0.0 0.0073 16.7 0.0 1.6 1 0 0 1 1 1 1 GAF domain Cellulase PF00150.18 AJD68390.1 - 3.4e-32 112.0 1.5 4.4e-32 111.6 1.5 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) HTH_29 PF13551.6 AJD68390.1 - 0.12 12.5 0.0 2.4 8.2 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Response_reg PF00072.24 AJD68391.1 - 7.2e-21 74.5 0.0 1.2e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HTH_8 PF02954.19 AJD68391.1 - 5.3e-13 48.5 0.9 1.1e-12 47.5 0.9 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 AJD68391.1 - 0.0012 18.6 0.4 0.0012 18.6 0.4 1.8 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.6 AJD68391.1 - 0.0046 16.9 0.1 0.014 15.4 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 AJD68391.1 - 0.017 15.3 1.1 0.026 14.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 AJD68391.1 - 0.05 13.6 2.6 0.3 11.1 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 AJD68391.1 - 0.05 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 AJD68391.1 - 0.08 12.4 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HOIP-UBA PF16678.5 AJD68391.1 - 0.096 12.7 0.0 0.23 11.5 0.0 1.6 2 0 0 2 2 2 0 HOIP UBA domain pair UPF0175 PF03683.13 AJD68391.1 - 0.14 11.9 0.3 4.8 6.9 0.0 3.1 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0175) HATPase_c PF02518.26 AJD68392.1 - 1.6e-10 41.4 0.0 2.7e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD68392.1 - 4.4e-06 26.6 0.5 1.1e-05 25.3 0.5 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AJD68392.1 - 0.00024 21.1 0.0 0.00049 20.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 AJD68392.1 - 0.22 11.5 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 GHKL domain GcpE PF04551.14 AJD68393.1 - 7e-108 360.8 0.0 8e-108 360.6 0.0 1.0 1 0 0 1 1 1 1 GcpE protein DUF647 PF04884.14 AJD68393.1 - 0.075 12.7 0.4 0.13 11.8 0.4 1.4 1 1 0 1 1 1 0 Vitamin B6 photo-protection and homoeostasis Laminin_II PF06009.12 AJD68393.1 - 0.19 11.7 0.1 0.75 9.8 0.0 1.8 2 0 0 2 2 2 0 Laminin Domain II PAP2 PF01569.21 AJD68394.1 - 3.6e-20 72.1 7.4 6.9e-20 71.2 7.4 1.4 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.6 AJD68394.1 - 1.5e-10 41.1 10.3 1.3e-09 38.0 10.3 2.1 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 AJD68394.1 - 0.0011 19.4 2.4 0.0024 18.4 2.4 1.5 1 0 0 1 1 1 1 PAP2 superfamily C-terminal STE2 PF02116.15 AJD68394.1 - 0.032 13.5 0.3 0.057 12.7 0.3 1.4 1 0 0 1 1 1 0 Fungal pheromone mating factor STE2 GPCR MFS_1 PF07690.16 AJD68395.1 - 4.5e-26 91.6 54.2 7.9e-19 67.8 26.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD68395.1 - 3.5e-14 52.5 14.7 9.6e-12 44.5 3.6 2.4 1 1 0 2 2 2 2 Sugar (and other) transporter ATG22 PF11700.8 AJD68395.1 - 0.0002 20.1 0.7 0.0004 19.2 0.3 1.6 1 1 0 1 1 1 1 Vacuole effluxer Atg22 like Asp_Glu_race PF01177.22 AJD68396.1 - 8.9e-61 205.6 0.2 1e-60 205.4 0.2 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 AJD68396.1 - 0.0058 16.0 0.2 0.024 14.0 0.1 1.9 2 0 0 2 2 2 1 Ketopantoate hydroxymethyltransferase AroM PF07302.11 AJD68396.1 - 0.034 13.6 2.5 0.51 9.7 0.4 2.4 1 1 0 2 2 2 0 AroM protein DUF2379 PF09543.10 AJD68396.1 - 0.12 12.6 0.1 0.38 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2379) EamA PF00892.20 AJD68397.1 - 1.1e-33 116.4 32.9 6.6e-17 62.0 13.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 AJD68397.1 - 0.035 14.2 2.1 1.2 9.2 0.1 2.5 3 0 0 3 3 3 0 Putative transmembrane family 234 DUF2830 PF11125.8 AJD68397.1 - 0.085 12.8 0.1 0.22 11.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2830) SLATT_1 PF18181.1 AJD68397.1 - 2.8 7.9 5.0 0.54 10.2 0.7 2.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Peptidase_U4 PF03419.13 AJD68397.1 - 4.7 6.4 8.4 6.7 5.9 8.4 1.5 1 0 0 1 1 1 0 Sporulation factor SpoIIGA MurB_C PF02873.16 AJD68398.1 - 1.4e-35 122.0 0.0 2.6e-35 121.1 0.0 1.5 1 0 0 1 1 1 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 AJD68398.1 - 7.3e-17 61.4 0.1 1.1e-16 60.8 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain DHO_dh PF01180.21 AJD68399.1 - 7.8e-90 301.1 0.0 9.8e-90 300.7 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 AJD68399.1 - 0.013 14.9 1.7 0.035 13.5 1.4 1.8 2 0 0 2 2 2 0 Nitronate monooxygenase FMN_dh PF01070.18 AJD68399.1 - 0.016 14.3 0.1 0.031 13.3 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase GGDEF_2 PF17853.1 AJD68399.1 - 0.098 12.9 1.5 0.51 10.6 1.5 2.1 1 1 0 1 1 1 0 GGDEF-like domain Methyltransf_11 PF08241.12 AJD68400.1 - 7e-15 55.5 0.0 1.1e-14 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD68400.1 - 4.6e-12 46.5 0.0 1.2e-11 45.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD68400.1 - 3.4e-06 27.7 0.0 5.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD68400.1 - 0.00065 19.6 0.0 0.0023 17.8 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.20 AJD68400.1 - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF4190 PF13828.6 AJD68401.1 - 5e-22 77.4 7.9 5e-22 77.4 7.9 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4190) Regnase_1_C PF18561.1 AJD68401.1 - 0.028 14.1 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain CD20 PF04103.15 AJD68401.1 - 0.093 12.8 4.5 0.19 11.8 4.5 1.5 1 1 0 1 1 1 0 CD20-like family DUF2207 PF09972.9 AJD68401.1 - 6.8 5.3 6.4 7.8 5.1 6.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Aldedh PF00171.22 AJD68402.1 - 2.9e-129 431.6 0.2 3.4e-129 431.4 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PgaD PF13994.6 AJD68403.1 - 1.3e-17 64.2 0.1 1.8e-17 63.8 0.1 1.1 1 0 0 1 1 1 1 PgaD-like protein Tad PF13400.6 AJD68403.1 - 0.27 11.6 3.1 1.8 8.9 0.1 2.4 1 1 1 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Glyco_tranf_2_3 PF13641.6 AJD68404.1 - 2.3e-36 125.8 0.5 2.3e-36 125.8 0.5 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 AJD68404.1 - 5.5e-34 117.4 0.0 7.5e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 AJD68404.1 - 6.3e-28 98.0 11.7 6.3e-28 98.0 11.7 2.3 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 AJD68404.1 - 2.4e-18 66.2 0.1 4.2e-18 65.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 AJD68404.1 - 1.5e-08 34.5 0.0 5.2e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 AJD68404.1 - 3.6e-08 32.5 0.0 9e-05 21.3 0.0 2.9 2 1 1 3 3 3 2 Chitin synthase Glyco_tranf_2_4 PF13704.6 AJD68404.1 - 0.0002 21.8 0.8 0.00044 20.7 0.8 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Cellulose_synt PF03552.14 AJD68404.1 - 0.0002 20.0 2.6 0.00021 19.9 2.6 1.2 1 0 0 1 1 1 1 Cellulose synthase NODP PF07684.12 AJD68404.1 - 0.16 12.2 0.1 0.29 11.3 0.1 1.3 1 0 0 1 1 1 0 NOTCH protein GHL13 PF14883.6 AJD68405.1 - 2.1e-112 375.4 2.0 2.1e-67 227.5 0.5 2.3 1 1 0 2 2 2 2 Hypothetical glycosyl hydrolase family 13 Polysacc_deac_1 PF01522.21 AJD68405.1 - 2.2e-25 89.0 0.0 8e-25 87.1 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 AJD68405.1 - 0.19 10.9 0.0 0.52 9.5 0.0 1.7 1 1 0 1 1 1 0 Glycosyl hydrolase family 57 TPR_19 PF14559.6 AJD68406.1 - 2.3e-13 50.4 32.4 3.1e-07 30.8 0.2 5.1 4 1 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 AJD68406.1 - 1.8e-08 34.9 8.9 5.8e-06 26.8 0.1 5.8 5 1 1 6 6 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 AJD68406.1 - 1.9e-08 33.8 3.7 0.05 13.7 0.0 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 AJD68406.1 - 3.5e-08 33.3 4.6 0.1 13.1 0.1 4.0 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 AJD68406.1 - 4.9e-07 30.0 45.8 0.024 15.4 3.3 8.2 5 3 4 9 9 9 4 Tetratricopeptide repeat TPR_1 PF00515.28 AJD68406.1 - 1.2e-06 28.1 0.2 2.2 8.3 0.0 4.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD68406.1 - 9.8e-05 22.3 0.2 9.8 6.7 0.0 4.8 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_7 PF13176.6 AJD68406.1 - 0.00016 21.4 6.0 1.4 9.1 0.2 5.9 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_11 PF13414.6 AJD68406.1 - 0.00024 20.7 0.6 0.49 10.1 0.1 3.7 3 1 1 4 4 4 1 TPR repeat ANAPC3 PF12895.7 AJD68406.1 - 0.0025 18.0 0.0 1.1 9.5 0.0 2.5 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 AJD68406.1 - 0.02 14.7 11.9 2.3 8.2 0.1 5.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_20 PF14561.6 AJD68406.1 - 0.022 15.1 14.8 0.14 12.5 0.1 4.4 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_9 PF13371.6 AJD68406.1 - 0.022 14.9 3.0 0.022 14.9 3.0 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 AJD68406.1 - 0.041 13.5 5.7 6.9 6.3 0.0 3.5 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_12 PF13424.6 AJD68406.1 - 0.053 13.8 21.5 0.085 13.2 0.1 4.6 4 2 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 AJD68406.1 - 1.3 9.8 21.2 2.8 8.8 0.1 5.8 7 0 0 7 7 6 0 Tetratricopeptide repeat ShlB PF03865.13 AJD68407.1 - 1.3e-103 346.8 2.8 1.6e-103 346.5 2.8 1.1 1 0 0 1 1 1 1 Haemolysin secretion/activation protein ShlB/FhaC/HecB POTRA_3 PF17287.2 AJD68407.1 - 6.4e-17 60.8 0.0 2.3e-16 59.0 0.0 2.0 1 0 0 1 1 1 1 POTRA domain POTRA_2 PF08479.11 AJD68407.1 - 5.1e-13 48.7 0.0 9.7e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 POTRA domain, ShlB-type Fil_haemagg_2 PF13332.6 AJD68408.1 - 6.8e-52 176.0 111.0 4.3e-39 134.4 25.2 34.5 8 5 21 31 31 31 12 Hemagglutinin repeat Fil_haemagg PF05594.14 AJD68408.1 - 7.2e-34 116.2 985.7 2.1e-08 34.6 12.7 55.5 21 12 27 50 50 50 32 Haemagluttinin repeat Haemagg_act PF05860.13 AJD68408.1 - 4.1e-32 110.6 4.0 4.1e-32 110.6 4.0 4.5 4 0 0 4 4 4 1 haemagglutination activity domain Fil_haemagg_2 PF13332.6 AJD68409.1 - 9.3e-68 227.6 152.8 3e-39 134.9 25.7 11.0 5 2 5 10 10 10 9 Hemagglutinin repeat Fil_haemagg PF05594.14 AJD68409.1 - 6.4e-08 33.0 12.7 6.4e-08 33.0 12.7 15.0 7 2 4 11 11 11 2 Haemagluttinin repeat TPR_16 PF13432.6 AJD68409.1 - 8.9 7.1 10.9 9.1 7.0 1.2 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Fil_haemagg PF05594.14 AJD68411.1 - 5e-09 36.6 8.9 9e-09 35.8 8.9 1.5 1 0 0 1 1 1 1 Haemagluttinin repeat TspO_MBR PF03073.15 AJD68412.1 - 9.5e-39 132.5 33.2 1.1e-38 132.3 33.2 1.0 1 0 0 1 1 1 1 TspO/MBR family Homoserine_dh PF00742.19 AJD68413.1 - 9.8e-51 172.1 0.0 1.9e-50 171.2 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase AA_kinase PF00696.28 AJD68413.1 - 8.7e-43 146.6 0.0 1.8e-42 145.6 0.0 1.5 1 0 0 1 1 1 1 Amino acid kinase family NAD_binding_3 PF03447.16 AJD68413.1 - 9.7e-23 81.1 0.0 4.4e-22 78.9 0.0 2.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT_7 PF13840.6 AJD68413.1 - 2.8e-18 65.5 0.3 5.6e-08 32.5 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 AJD68413.1 - 2.9e-14 52.5 0.6 7.4e-06 25.6 0.1 2.9 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 AJD68413.1 - 0.34 10.9 1.8 2.5 8.1 0.0 3.1 4 0 0 4 4 4 0 ACT domain GHMP_kinases_C PF08544.13 AJD68414.1 - 1e-11 45.0 0.5 3.6e-11 43.3 0.5 2.0 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 AJD68414.1 - 1e-09 38.5 5.3 1.2e-09 38.3 3.5 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain EthD PF07110.11 AJD68415.1 - 2.9e-08 34.8 0.0 3.5e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 EthD domain PALP PF00291.25 AJD68416.1 - 4.2e-21 75.6 1.6 6.9e-21 74.9 1.6 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 AJD68416.1 - 1.1e-13 51.2 0.0 2.1e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Threonine synthase N terminus YkuD_2 PF13645.6 AJD68417.1 - 1.5e-64 216.6 0.0 1.8e-64 216.3 0.0 1.1 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain YkuD PF03734.14 AJD68417.1 - 4.2e-07 30.5 0.0 8.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain HTH_Crp_2 PF13545.6 AJD68418.1 - 1.9e-21 75.8 0.9 3.6e-21 74.9 0.9 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 AJD68418.1 - 3.5e-16 58.5 0.5 3.7e-15 55.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family cNMP_binding PF00027.29 AJD68418.1 - 1.2e-15 57.3 0.0 4.2e-15 55.6 0.0 1.9 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain HTH_23 PF13384.6 AJD68418.1 - 0.0045 16.7 0.0 0.013 15.2 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 AJD68418.1 - 0.0059 16.5 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AJD68418.1 - 0.0062 16.4 0.4 0.02 14.8 0.1 2.1 2 1 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AJD68418.1 - 0.0067 15.8 0.1 0.025 14.0 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 AJD68418.1 - 0.0099 15.9 0.5 0.066 13.3 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.20 AJD68418.1 - 0.014 15.3 0.0 0.043 13.7 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 AJD68418.1 - 0.016 14.8 0.0 0.032 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 AJD68418.1 - 0.017 15.0 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 MarR family tRNA-synt_His PF13393.6 AJD68419.1 - 2.5e-34 119.0 0.9 9.7e-29 100.6 0.4 2.2 2 0 0 2 2 2 2 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 AJD68419.1 - 1.4e-13 50.8 0.4 2.7e-13 49.9 0.4 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 AJD68419.1 - 5.7e-09 36.2 0.0 9.4e-09 35.5 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 AJD68419.1 - 0.0048 16.0 0.1 0.12 11.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) HGTP_anticodon2 PF12745.7 AJD68419.1 - 0.022 14.3 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs tRNA-synt_2d PF01409.20 AJD68419.1 - 0.028 13.9 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Trp_repressor PF01371.19 AJD68420.1 - 2.7e-28 97.9 0.0 3.8e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein HTH_23 PF13384.6 AJD68420.1 - 6.7e-05 22.6 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HisG PF01634.18 AJD68421.1 - 3.1e-44 150.7 0.0 4.1e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 AJD68421.1 - 1.1e-07 31.9 0.0 2.2e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Histidinol_dh PF00815.20 AJD68422.1 - 7.7e-162 539.0 2.8 8.6e-162 538.8 2.8 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Aminotran_1_2 PF00155.21 AJD68423.1 - 1e-50 173.0 0.0 1.2e-50 172.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 AJD68423.1 - 9.4e-05 21.1 0.0 0.00013 20.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 AJD68423.1 - 0.00035 19.6 0.0 0.00055 19.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 AJD68423.1 - 0.16 10.4 0.0 1.3 7.5 0.0 1.9 1 1 1 2 2 2 0 Methionine gamma-lyase IGPD PF00475.18 AJD68424.1 - 3.1e-64 215.6 0.0 4.6e-64 215.1 0.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Hydrolase_like PF13242.6 AJD68424.1 - 3.2e-05 23.9 0.0 7.2e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 AJD68424.1 - 6.8e-05 23.0 0.0 0.035 14.2 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase PNK3P PF08645.11 AJD68424.1 - 0.00029 20.5 0.0 0.00094 18.9 0.0 1.8 1 1 0 1 1 1 1 Polynucleotide kinase 3 phosphatase Hydrolase PF00702.26 AJD68424.1 - 0.034 14.4 0.0 4.1 7.6 0.0 2.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AJD68424.1 - 0.098 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase GATase PF00117.28 AJD68425.1 - 2.3e-19 69.9 0.0 2.9e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 AJD68425.1 - 9.7e-06 25.6 0.0 0.00011 22.2 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 AJD68425.1 - 0.00076 19.3 0.0 0.0014 18.4 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 AJD68425.1 - 0.0019 17.8 0.0 0.0027 17.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Transglycosylas PF06737.14 AJD68425.1 - 0.063 13.9 0.0 0.12 13.0 0.0 1.4 1 0 0 1 1 1 0 Transglycosylase-like domain His_biosynth PF00977.21 AJD68426.1 - 9.5e-68 228.1 0.3 1.1e-67 227.9 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 AJD68426.1 - 0.00043 19.4 3.7 0.0075 15.3 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 AJD68426.1 - 0.00045 19.4 8.5 0.02 14.0 0.5 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Trp_syntA PF00290.20 AJD68426.1 - 0.0013 17.7 0.2 0.008 15.1 0.1 2.0 2 0 0 2 2 2 1 Tryptophan synthase alpha chain PcrB PF01884.17 AJD68426.1 - 0.012 15.1 0.3 0.022 14.2 0.1 1.5 2 0 0 2 2 2 0 PcrB family PEP_mutase PF13714.6 AJD68426.1 - 0.02 14.3 2.9 0.021 14.3 1.0 1.8 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase G3P_antiterm PF04309.12 AJD68426.1 - 0.047 13.1 0.3 0.085 12.3 0.0 1.6 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator MccV PF17508.2 AJD68426.1 - 0.34 11.5 4.2 5.2 7.7 0.2 2.7 2 1 1 3 3 3 0 Microcin V bacteriocin Ribul_P_3_epim PF00834.19 AJD68426.1 - 0.95 8.8 2.3 14 5.0 0.2 2.6 3 0 0 3 3 3 0 Ribulose-phosphate 3 epimerase family NMO PF03060.15 AJD68426.1 - 6.5 6.0 7.9 5.2 6.4 1.8 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase His_biosynth PF00977.21 AJD68427.1 - 1.7e-71 240.3 0.0 2e-71 240.1 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 AJD68427.1 - 1.5e-07 30.9 0.1 0.00012 21.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 AJD68427.1 - 6.9e-05 22.4 1.6 0.0077 15.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.17 AJD68427.1 - 0.00095 18.5 0.0 0.076 12.3 0.0 2.4 2 0 0 2 2 2 2 Thiamine monophosphate synthase ThiG PF05690.14 AJD68427.1 - 0.0034 16.7 0.1 0.06 12.6 0.0 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PRA-CH PF01502.18 AJD68428.1 - 4.6e-31 106.5 0.0 7.9e-31 105.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 AJD68428.1 - 1.8e-11 44.3 0.0 2.5e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MetallophosC PF16370.5 AJD68429.1 - 2.6e-37 128.5 0.0 4.9e-37 127.7 0.0 1.4 1 0 0 1 1 1 1 C terminal of Calcineurin-like phosphoesterase MetallophosN PF16371.5 AJD68429.1 - 4e-11 43.0 0.0 5.7e-10 39.3 0.0 2.4 2 0 0 2 2 2 1 N terminal of Calcineurin-like phosphoesterase Metallophos PF00149.28 AJD68429.1 - 5.4e-06 27.0 0.1 8.6e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Peptidase_C13 PF01650.18 AJD68430.1 - 2.3e-50 171.5 0.0 1e-49 169.4 0.0 1.8 1 1 0 1 1 1 1 Peptidase C13 family TPM_phosphatase PF04536.14 AJD68430.1 - 0.16 12.1 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 TPM domain Hydrolase PF00702.26 AJD68431.1 - 0.0002 21.7 0.0 0.00024 21.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 AJD68431.1 - 0.007 16.5 0.0 0.014 15.5 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase RPT PF13446.6 AJD68431.1 - 0.061 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein Hydrolase_like PF13242.6 AJD68431.1 - 0.089 12.9 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like ARD PF03079.14 AJD68432.1 - 8.3e-32 110.5 0.0 9.5e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family Cupin_2 PF07883.11 AJD68432.1 - 0.00064 19.4 0.2 0.0012 18.5 0.2 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 AJD68432.1 - 0.00097 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Cupin Aldolase_II PF00596.21 AJD68433.1 - 1.2e-39 136.2 0.2 1.4e-39 136.0 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain RNA_pol_inhib PF16857.5 AJD68433.1 - 0.12 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase inhibitor AA_permease_2 PF13520.6 AJD68434.1 - 1.1e-61 209.0 37.4 1.3e-61 208.7 37.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD68434.1 - 6e-40 137.2 35.4 7.6e-40 136.9 35.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 AJD68434.1 - 2.5e-07 30.6 3.4 2.5e-07 30.6 3.4 4.2 6 0 0 6 6 6 1 C-terminus of AA_permease AA_permease_2 PF13520.6 AJD68435.1 - 6.7e-62 209.7 45.8 8.2e-62 209.4 45.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD68435.1 - 6.7e-45 153.6 41.0 8.4e-45 153.3 41.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 AJD68435.1 - 3.8e-06 26.9 2.2 3.8e-06 26.9 2.2 4.7 4 1 0 4 4 4 1 C-terminus of AA_permease NUDIX PF00293.28 AJD68436.1 - 4.7e-07 29.9 0.9 7e-07 29.3 0.9 1.3 1 0 0 1 1 1 1 NUDIX domain 3-alpha PF03475.14 AJD68436.1 - 1.8 8.5 8.1 0.16 11.9 2.0 2.4 2 1 1 3 3 3 0 3-alpha domain 2-Hacid_dh_C PF02826.19 AJD68437.1 - 2.7e-51 173.5 0.0 4.4e-51 172.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AJD68437.1 - 6.6e-37 126.2 0.0 8.2e-37 125.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 AJD68437.1 - 1.3e-05 24.9 0.1 3.4e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.15 AJD68437.1 - 0.0014 18.8 0.2 0.0027 17.9 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 AJD68437.1 - 0.021 15.3 0.2 0.096 13.2 0.1 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain AdoHcyase_NAD PF00670.21 AJD68437.1 - 0.035 14.2 0.2 0.062 13.4 0.2 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 AJD68437.1 - 0.047 13.3 0.1 0.096 12.3 0.1 1.5 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_N PF03721.14 AJD68437.1 - 0.13 11.9 1.4 0.56 9.8 0.8 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 AJD68437.1 - 0.2 10.9 1.2 1.5 8.1 1.2 2.2 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 AJD68437.1 - 0.2 11.5 0.5 1.6 8.6 0.4 2.0 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD-oxidase_C PF02913.19 AJD68438.1 - 7.3e-56 189.6 0.2 9.3e-56 189.2 0.2 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 AJD68438.1 - 9.9e-39 132.3 2.3 1.5e-38 131.6 2.3 1.3 1 0 0 1 1 1 1 FAD binding domain DUF2388 PF09498.10 AJD68439.1 - 2.4e-25 88.3 6.8 3.2e-25 87.9 6.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2388) DUF4105 PF13387.6 AJD68440.1 - 8.6e-30 103.6 0.0 1.4e-29 102.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4105) Peptidase_M90 PF06167.12 AJD68440.1 - 0.018 14.7 0.1 0.048 13.3 0.1 1.5 1 1 0 1 1 1 0 Glucose-regulated metallo-peptidase M90 DUF5133 PF17196.4 AJD68441.1 - 0.00063 19.9 0.6 0.79 10.0 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF5133) Elong-fact-P_C PF09285.11 AJD68442.1 - 8.4e-21 73.5 0.4 1.7e-20 72.5 0.4 1.5 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP PF01132.20 AJD68442.1 - 2.9e-13 49.6 0.2 5.3e-13 48.8 0.2 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain EFP_N PF08207.12 AJD68442.1 - 3.4e-13 49.4 0.1 7.5e-13 48.3 0.1 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain adh_short PF00106.25 AJD68443.1 - 2e-47 161.2 6.3 2.3e-47 161.0 6.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD68443.1 - 3.5e-47 160.9 4.4 4.5e-47 160.6 4.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD68443.1 - 3.3e-09 36.9 8.1 9.3e-09 35.4 7.3 2.0 1 1 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 AJD68443.1 - 0.011 15.7 4.0 0.028 14.4 4.0 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase tify PF06200.14 AJD68443.1 - 0.079 12.3 0.1 0.17 11.3 0.1 1.6 1 0 0 1 1 1 0 tify domain Sacchrp_dh_NADP PF03435.18 AJD68443.1 - 0.094 13.0 0.8 0.19 12.0 0.3 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 AJD68443.1 - 0.1 12.5 0.4 0.17 11.8 0.4 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HMGL-like PF00682.19 AJD68444.1 - 5.1e-52 177.0 0.0 5.8e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 HMGL-like TetR_C_6 PF13977.6 AJD68444.1 - 0.011 15.9 0.3 0.1 12.8 0.0 2.6 2 1 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal Glyoxalase PF00903.25 AJD68445.1 - 1.4e-11 44.6 0.3 4.8e-11 42.9 0.3 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD68445.1 - 4.2e-05 24.3 0.9 7.2e-05 23.5 0.9 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain ECH_1 PF00378.20 AJD68446.1 - 1.1e-45 155.9 0.1 1.2e-45 155.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD68446.1 - 1.1e-24 87.5 0.1 1.2e-24 87.4 0.1 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF5130 PF17174.4 AJD68446.1 - 0.049 13.8 0.4 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5130) FeoA PF04023.14 AJD68447.1 - 4.7e-18 65.2 0.4 5.5e-18 65.0 0.4 1.1 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 AJD68448.1 - 2.6e-52 176.5 0.0 4e-52 175.9 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 AJD68448.1 - 4.7e-39 133.1 13.6 2.4e-25 89.0 2.7 2.6 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 AJD68448.1 - 5.9e-17 61.8 0.0 1e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 AJD68448.1 - 3.6e-15 55.4 0.1 2.3e-14 52.8 0.1 2.5 1 0 0 1 1 1 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 AJD68448.1 - 1.4e-05 24.6 0.0 2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.10 AJD68448.1 - 5.7e-05 22.6 0.0 9.2e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 AJD68448.1 - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RseC_MucC PF04246.12 AJD68448.1 - 0.14 12.1 0.1 0.14 12.1 0.1 3.2 3 1 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC FeoB_associated PF12669.7 AJD68449.1 - 0.15 12.5 3.9 1.4 9.4 0.4 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF4440 PF14534.6 AJD68450.1 - 0.029 14.8 0.4 0.052 14.0 0.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4440) Aminotran_1_2 PF00155.21 AJD68451.1 - 2.3e-31 109.3 0.0 2.6e-31 109.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II MOSC PF03473.17 AJD68452.1 - 2.7e-27 95.4 0.0 5.6e-27 94.3 0.0 1.6 1 0 0 1 1 1 1 MOSC domain 3-alpha PF03475.14 AJD68452.1 - 6.3e-11 42.0 2.6 1.7e-10 40.6 2.6 1.7 1 0 0 1 1 1 1 3-alpha domain DapB_C PF05173.14 AJD68453.1 - 1.3e-31 109.1 0.0 1.9e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 AJD68453.1 - 1.8e-25 89.4 0.0 3.1e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 AJD68453.1 - 0.02 15.1 0.0 1.5 9.0 0.0 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CPSase_sm_chain PF00988.22 AJD68454.1 - 3.3e-53 178.9 0.0 5.1e-53 178.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 AJD68454.1 - 7.4e-46 156.3 0.0 1.1e-45 155.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AJD68454.1 - 1.8e-06 27.9 0.1 1.7e-05 24.7 0.1 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 AJD68454.1 - 0.0019 18.1 0.0 0.004 17.0 0.0 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family DUF485 PF04341.12 AJD68455.1 - 0.019 14.9 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF485 CPSase_L_D2 PF02786.17 AJD68456.1 - 9.1e-111 368.4 0.0 5.3e-70 235.2 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 AJD68456.1 - 1.5e-40 138.3 0.0 1.7e-39 134.9 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 AJD68456.1 - 3.7e-20 71.9 0.0 2.1e-19 69.5 0.0 2.3 2 0 0 2 2 2 1 MGS-like domain ATP-grasp PF02222.22 AJD68456.1 - 2.9e-14 53.0 0.0 2e-09 37.2 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 AJD68456.1 - 2.5e-10 40.2 0.0 0.0004 20.0 0.0 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 AJD68456.1 - 3.7e-09 36.4 0.2 8.3e-05 22.3 0.1 3.2 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.6 AJD68456.1 - 5.1e-07 29.4 0.0 0.027 14.1 0.0 3.5 3 1 0 3 3 3 2 ATP-grasp domain ATP-grasp_5 PF13549.6 AJD68456.1 - 5.6e-05 22.7 0.0 0.014 14.8 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 AJD68456.1 - 0.00015 21.8 0.2 0.26 11.3 0.0 3.2 3 0 0 3 3 3 2 ATP-grasp domain B12-binding PF02310.19 AJD68456.1 - 0.0011 19.0 0.1 4.9 7.2 0.0 4.1 2 1 1 3 3 3 2 B12 binding domain CoA_binding_2 PF13380.6 AJD68456.1 - 0.0031 18.0 0.0 5.4 7.5 0.0 3.5 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.10 AJD68456.1 - 0.024 14.2 0.0 9.2 5.8 0.0 2.6 2 0 0 2 2 2 0 ATP-grasp domain GreA_GreB_N PF03449.15 AJD68457.1 - 2.3e-32 110.9 3.2 3.7e-32 110.3 3.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 AJD68457.1 - 2e-26 91.7 0.1 3.2e-26 91.0 0.1 1.3 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term DUF1843 PF08898.10 AJD68457.1 - 0.071 13.6 2.6 0.095 13.2 1.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) IrmA PF18673.1 AJD68457.1 - 0.16 12.1 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 interleukin receptor mimic protein A BTAD PF03704.17 AJD68458.1 - 0.22 12.0 5.7 5.4 7.4 0.3 2.6 3 0 0 3 3 3 0 Bacterial transcriptional activator domain DHHA1 PF02272.19 AJD68459.1 - 2.1e-24 86.5 0.0 3.7e-24 85.7 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain RecJ_OB PF17768.1 AJD68459.1 - 1.4e-14 54.3 0.0 2.3e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 RecJ OB domain DHH PF01368.20 AJD68459.1 - 1.3e-09 38.2 0.0 2.6e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 DHH family RHS_repeat PF05593.14 AJD68460.1 - 5.5e-29 100.2 87.2 1.9e-07 31.5 0.7 18.3 13 4 7 20 20 20 9 RHS Repeat ChitinaseA_N PF08329.10 AJD68460.1 - 0.068 12.8 4.9 1.1 8.9 1.1 2.7 1 1 1 2 2 2 0 Chitinase A, N-terminal domain A_amylase_inhib PF01356.19 AJD68460.1 - 0.087 12.8 0.2 0.087 12.8 0.2 3.6 3 0 0 3 3 3 0 Alpha amylase inhibitor ChitinaseA_N PF08329.10 AJD68461.1 - 0.00065 19.4 9.4 0.18 11.4 0.3 3.2 3 0 0 3 3 3 3 Chitinase A, N-terminal domain OxoGdeHyase_C PF16870.5 AJD68461.1 - 0.13 11.9 1.1 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 2-oxoglutarate dehydrogenase C-terminal Tox-REase-7 PF15649.6 AJD68462.1 - 2.8e-11 43.6 0.0 6e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease fold toxin 7 RHS PF03527.14 AJD68462.1 - 3e-05 23.7 0.0 8.5e-05 22.2 0.0 1.8 1 0 0 1 1 1 1 RHS protein VPS13_C PF16909.5 AJD68462.1 - 0.046 13.5 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 Vacuolar-sorting-associated 13 protein C-terminal HEAT_2 PF13646.6 AJD68463.1 - 3.2e-05 24.2 2.1 0.1 13.0 0.9 2.7 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 AJD68463.1 - 0.031 14.9 0.4 9.4 7.2 0.0 3.0 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat DUF5615 PF18480.1 AJD68463.1 - 0.035 13.9 0.2 4 7.3 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF5615) RHS_repeat PF05593.14 AJD68464.1 - 0.00035 21.0 0.8 0.00035 21.0 0.8 2.7 1 1 2 3 3 3 3 RHS Repeat DUF4595 PF15283.6 AJD68464.1 - 0.04 14.0 1.4 0.054 13.6 1.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4595) with porin-like fold rve PF00665.26 AJD68465.1 - 2.7e-05 24.3 0.0 7.7e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 Integrase core domain SHE3 PF17078.5 AJD68465.1 - 0.15 11.8 0.2 0.22 11.2 0.2 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Acyl_transf_3 PF01757.22 AJD68466.1 - 3.4e-24 85.5 37.6 4.7e-24 85.1 37.6 1.1 1 0 0 1 1 1 1 Acyltransferase family LytTR PF04397.15 AJD68467.1 - 4.1e-25 87.8 0.0 5.5e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 LytTr DNA-binding domain PCRF PF03462.18 AJD68468.1 - 4.1e-51 173.6 0.3 4.1e-51 173.6 0.3 1.8 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 AJD68468.1 - 3.8e-41 139.7 0.8 6.1e-41 139.0 0.8 1.3 1 0 0 1 1 1 1 RF-1 domain tRNA-synt_2 PF00152.20 AJD68469.1 - 1.1e-81 274.3 0.0 1.3e-81 274.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 AJD68469.1 - 1.4e-14 53.8 0.1 2.7e-14 52.9 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 AJD68469.1 - 0.0028 17.2 0.6 0.55 9.7 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Response_reg PF00072.24 AJD68470.1 - 5.4e-26 90.9 0.0 9e-26 90.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HD_5 PF13487.6 AJD68470.1 - 6e-19 68.1 0.2 1.9e-18 66.4 0.0 2.0 2 0 0 2 2 2 1 HD domain HD PF01966.22 AJD68470.1 - 9.9e-19 67.8 0.1 2e-18 66.7 0.1 1.5 1 0 0 1 1 1 1 HD domain ATPgrasp_N PF18130.1 AJD68470.1 - 0.0047 17.5 0.1 3.8 8.1 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp N-terminal domain HATPase_c PF02518.26 AJD68471.1 - 9e-26 90.6 0.0 1.7e-25 89.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD68471.1 - 3.8e-21 75.3 0.1 7.5e-21 74.4 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AJD68471.1 - 3.8e-18 65.3 0.2 1.1e-17 63.8 0.2 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 AJD68471.1 - 4.2e-06 26.9 3.1 1.5e-05 25.1 3.1 2.1 1 0 0 1 1 1 1 Hpt domain SLT_L PF14718.6 AJD68471.1 - 0.58 10.3 2.2 12 6.1 0.7 2.6 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain ECH_1 PF00378.20 AJD68472.1 - 1e-21 77.4 0.0 1.4e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AJD68472.1 - 3.8e-13 49.7 0.0 4.6e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase AMP-binding PF00501.28 AJD68473.1 - 4.5e-113 378.0 0.0 5.9e-113 377.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AJD68473.1 - 1.4e-17 64.4 6.3 1.9e-17 64.0 3.5 2.6 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 AJD68473.1 - 0.094 13.0 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain DUF4440 PF14534.6 AJD68474.1 - 0.00012 22.5 1.2 0.00017 21.9 1.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 AJD68474.1 - 0.0034 18.0 0.5 0.0048 17.5 0.5 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 AJD68474.1 - 0.0067 16.7 0.3 0.011 16.0 0.3 1.3 1 0 0 1 1 1 1 SnoaL-like domain HrpJ PF07201.11 AJD68474.1 - 0.023 15.0 0.0 0.029 14.7 0.0 1.1 1 0 0 1 1 1 0 HrpJ-like domain Cpta_toxin PF07254.12 AJD68474.1 - 0.49 10.4 4.0 9.9 6.2 1.7 2.2 2 0 0 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system Aconitase PF00330.20 AJD68475.1 - 3.3e-182 606.6 0.0 4.3e-182 606.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 AJD68475.1 - 1.1e-43 148.7 0.0 1.8e-43 148.0 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain MazE_antitoxin PF04014.18 AJD68476.1 - 4.3e-11 42.5 0.1 6.1e-11 42.0 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 AJD68476.1 - 1.7e-06 28.4 0.0 1.8e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin AbrB-like PF14250.6 AJD68476.1 - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 AbrB-like transcriptional regulator PIN PF01850.21 AJD68477.1 - 7.9e-08 32.8 0.1 1.3e-07 32.1 0.1 1.4 1 1 0 1 1 1 1 PIN domain Aconitase_2_N PF06434.13 AJD68478.1 - 2.1e-94 314.9 0.0 3.1e-94 314.3 0.0 1.3 1 0 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase_B_N PF11791.8 AJD68478.1 - 6.8e-65 217.8 0.3 1.3e-64 216.9 0.3 1.5 1 0 0 1 1 1 1 Aconitate B N-terminal domain Aconitase PF00330.20 AJD68478.1 - 9.8e-42 143.5 0.0 7e-40 137.4 0.0 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Ketoacyl-synt_C PF02801.22 AJD68478.1 - 0.049 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain Abhydrolase_1 PF00561.20 AJD68479.1 - 8.3e-20 71.5 0.0 2.2e-16 60.3 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD68479.1 - 9.3e-14 52.5 7.7 1.3e-13 52.1 7.7 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD68479.1 - 1.1e-06 28.1 0.1 1.5e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 AJD68479.1 - 0.00068 18.4 0.0 0.00087 18.1 0.0 1.1 1 0 0 1 1 1 1 Ndr family EAL PF00563.20 AJD68480.1 - 9.2e-74 247.9 1.1 3.8e-73 245.9 0.1 2.3 3 0 0 3 3 3 1 EAL domain GGDEF PF00990.21 AJD68480.1 - 2.2e-42 144.5 0.0 4.4e-42 143.6 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 AJD68480.1 - 3.3e-17 62.6 0.0 6.2e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 AJD68480.1 - 1.1e-14 54.6 0.4 5.5e-14 52.3 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 AJD68480.1 - 1.1e-11 44.8 0.0 2.2e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 AJD68480.1 - 7.8e-11 42.4 0.0 2.1e-10 41.0 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 AJD68480.1 - 2.6e-09 37.8 0.0 8.4e-09 36.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 AJD68480.1 - 4.4e-07 29.8 0.0 1.4e-06 28.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 AJD68480.1 - 8.6e-07 29.2 0.0 2.2e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 AJD68480.1 - 0.00084 19.5 0.0 0.0022 18.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold CheB_methylest PF01339.17 AJD68481.1 - 4.1e-58 195.8 0.1 5.8e-57 192.1 0.0 2.1 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 AJD68481.1 - 1.8e-25 89.3 0.4 9.8e-25 86.9 0.1 2.3 2 1 0 2 2 2 1 Response regulator receiver domain CheD PF03975.13 AJD68482.1 - 6.6e-33 113.1 0.0 1.1e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheR PF01739.18 AJD68483.1 - 8.3e-49 165.7 0.0 1.2e-48 165.3 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 AJD68483.1 - 5e-18 64.6 0.8 5e-18 64.6 0.8 2.0 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain MCPsignal PF00015.21 AJD68484.1 - 1.3e-52 178.1 21.3 1.3e-52 178.1 21.3 4.6 3 1 1 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP_N3 PF18575.1 AJD68484.1 - 5.8e-20 70.6 0.2 3.9e-17 61.5 0.0 3.9 3 0 0 3 3 3 1 HAMP N-terminal domain 3 4HB_MCP_1 PF12729.7 AJD68484.1 - 5.5e-18 65.2 0.8 5.5e-18 65.2 0.8 4.9 5 1 0 5 5 5 2 Four helix bundle sensory module for signal transduction HAMP PF00672.25 AJD68484.1 - 2.1e-11 44.0 16.8 5.1e-10 39.6 0.8 5.8 5 0 0 5 5 5 2 HAMP domain TMF_TATA_bd PF12325.8 AJD68484.1 - 0.02 15.1 10.5 8.4 6.7 0.1 4.6 3 1 1 4 4 4 0 TATA element modulatory factor 1 TATA binding JIP_LZII PF16471.5 AJD68484.1 - 0.059 13.5 0.1 0.059 13.5 0.1 3.6 4 0 0 4 4 4 0 JNK-interacting protein leucine zipper II BRCC36_C PF18110.1 AJD68484.1 - 0.064 13.4 1.5 0.22 11.7 0.0 2.8 2 0 0 2 2 2 0 BRCC36 C-terminal helical domain IFT57 PF10498.9 AJD68484.1 - 1.1 8.2 15.5 0.39 9.6 0.0 3.7 4 0 0 4 4 4 0 Intra-flagellar transport protein 57 DUF4200 PF13863.6 AJD68484.1 - 1.2 9.6 5.1 8.6 6.8 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) Laminin_II PF06009.12 AJD68484.1 - 6 6.9 27.9 0.049 13.6 1.3 5.3 7 1 1 8 8 8 0 Laminin Domain II DUF1664 PF07889.12 AJD68484.1 - 6.6 6.8 24.6 1.7 8.7 2.4 5.5 5 2 2 7 7 7 0 Protein of unknown function (DUF1664) MCPsignal PF00015.21 AJD68485.1 - 8.1e-54 182.0 36.7 2.6e-52 177.1 21.0 3.6 3 1 0 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP_N3 PF18575.1 AJD68485.1 - 1e-20 73.0 0.2 9.8e-18 63.5 0.1 3.9 3 0 0 3 3 3 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68485.1 - 8e-12 45.4 13.1 1.7e-07 31.5 1.7 5.9 5 0 0 5 5 4 2 HAMP domain BLOC1_2 PF10046.9 AJD68485.1 - 0.0011 19.2 13.9 0.57 10.5 1.5 4.6 3 1 0 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vps53_N PF04100.12 AJD68485.1 - 0.0026 16.8 13.7 0.018 14.1 3.2 2.5 2 0 0 2 2 2 2 Vps53-like, N-terminal DUF1664 PF07889.12 AJD68485.1 - 0.17 12.0 24.0 0.12 12.4 7.2 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 AJD68485.1 - 0.47 9.7 7.4 9.3 5.4 0.1 2.9 3 0 0 3 3 3 0 TMPIT-like protein TACC_C PF05010.14 AJD68485.1 - 0.5 10.1 7.5 7.8 6.2 0.1 3.1 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal zf-C4H2 PF10146.9 AJD68485.1 - 0.51 10.6 8.5 8.5 6.6 1.8 3.4 2 1 0 2 2 2 0 Zinc finger-containing protein IFT57 PF10498.9 AJD68485.1 - 0.71 8.8 14.4 0.56 9.1 0.2 2.9 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Cauli_DNA-bind PF03310.13 AJD68485.1 - 0.74 9.9 8.6 0.059 13.4 1.4 2.9 3 0 0 3 3 3 0 Caulimovirus DNA-binding protein COG2 PF06148.11 AJD68485.1 - 0.9 9.6 11.6 2.5 8.2 2.1 4.3 2 1 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 GT87 PF09594.10 AJD68485.1 - 0.9 9.2 10.3 0.29 10.8 6.2 2.2 2 0 0 2 2 2 0 Glycosyltransferase family 87 Laminin_II PF06009.12 AJD68485.1 - 0.99 9.4 29.6 0.019 15.0 3.7 4.7 7 1 0 7 7 4 0 Laminin Domain II DUF4665 PF15679.5 AJD68485.1 - 1 10.0 6.0 13 6.5 0.4 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4665) Fib_alpha PF08702.10 AJD68485.1 - 1.1 9.4 15.4 0.78 9.9 0.7 3.8 3 1 0 3 3 3 0 Fibrinogen alpha/beta chain family ANAPC4 PF12896.7 AJD68485.1 - 1.3 8.4 4.3 2.1 7.8 0.4 2.9 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 Noelin-1 PF12308.8 AJD68485.1 - 1.9 8.5 14.2 0.64 10.0 1.5 4.3 4 1 0 4 4 4 0 Neurogenesis glycoprotein Prominin PF05478.11 AJD68485.1 - 2 6.2 14.4 3.5 5.5 3.5 3.1 1 1 2 3 3 3 0 Prominin GAS PF13851.6 AJD68485.1 - 2.2 7.6 8.6 8 5.8 1.2 3.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.6 AJD68485.1 - 4 7.9 11.0 5 7.5 0.0 3.3 4 0 0 4 4 2 0 Domain of unknown function (DUF4200) DUF948 PF06103.11 AJD68485.1 - 4.3 7.7 35.2 0.32 11.3 1.5 7.0 5 3 2 7 7 7 0 Bacterial protein of unknown function (DUF948) Mur_ligase_C PF02875.21 AJD68485.1 - 5.8 7.2 6.1 67 3.8 0.0 4.5 4 1 1 5 5 5 0 Mur ligase family, glutamate ligase domain Sec34 PF04136.15 AJD68485.1 - 8 6.3 9.5 22 4.9 0.7 4.0 4 1 1 5 5 5 0 Sec34-like family MCPsignal PF00015.21 AJD68486.1 - 2e-52 177.5 39.2 9.2e-52 175.3 20.0 4.4 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 AJD68486.1 - 1.7e-14 53.8 0.3 1.7e-14 53.8 0.3 4.0 5 0 0 5 5 5 1 Four helix bundle sensory module for signal transduction HAMP_N3 PF18575.1 AJD68486.1 - 5.6e-12 45.0 0.0 2.3e-09 36.7 0.0 3.8 4 0 0 4 4 4 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68486.1 - 6.4e-08 32.9 23.4 9e-08 32.4 1.4 6.8 8 0 0 8 8 8 2 HAMP domain TarH PF02203.15 AJD68486.1 - 0.0013 18.7 6.2 0.0013 18.7 6.2 4.7 4 1 1 5 5 5 1 Tar ligand binding domain homologue Tox-URI2 PF15653.6 AJD68486.1 - 0.1 12.9 0.1 0.32 11.3 0.1 1.8 1 0 0 1 1 1 0 URI fold toxin 2 Laminin_II PF06009.12 AJD68486.1 - 0.15 12.0 21.6 0.065 13.3 4.2 4.3 3 1 2 5 5 5 0 Laminin Domain II Prominin PF05478.11 AJD68486.1 - 2.4 6.0 6.1 0.55 8.1 1.0 2.2 1 1 0 1 1 1 0 Prominin IFT57 PF10498.9 AJD68486.1 - 2.4 7.0 8.1 1.4 7.8 0.0 2.8 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 BLOC1_2 PF10046.9 AJD68486.1 - 3.2 8.1 12.6 5.1 7.5 0.8 4.7 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Nup54 PF13874.6 AJD68486.1 - 5.5 7.1 14.6 2.2 8.4 3.3 3.8 3 1 0 3 3 3 0 Nucleoporin complex subunit 54 Sec20 PF03908.13 AJD68486.1 - 7.3 6.6 8.4 18 5.3 0.8 3.5 2 0 0 2 2 2 0 Sec20 MCPsignal PF00015.21 AJD68487.1 - 8.7e-51 172.1 21.5 8.7e-51 172.1 21.5 3.6 3 1 1 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain CHASE3 PF05227.13 AJD68487.1 - 1.2e-30 106.3 2.2 1.2e-30 106.3 2.2 4.4 5 1 0 5 5 5 1 CHASE3 domain HAMP_N3 PF18575.1 AJD68487.1 - 3.9e-18 64.7 2.7 2e-15 56.1 0.1 4.7 5 0 0 5 5 5 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68487.1 - 1.1e-09 38.5 9.1 3.2e-07 30.6 0.2 5.7 6 1 0 6 6 6 1 HAMP domain FlpD PF02662.16 AJD68487.1 - 0.066 13.2 0.1 0.5 10.4 0.0 2.6 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit DUF2887 PF11103.8 AJD68487.1 - 0.14 12.2 0.9 0.38 10.7 0.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) Tox-URI2 PF15653.6 AJD68487.1 - 0.14 12.4 0.1 0.41 10.9 0.1 1.8 1 0 0 1 1 1 0 URI fold toxin 2 DUF4795 PF16043.5 AJD68487.1 - 0.49 10.0 9.7 8.7 5.9 0.5 4.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4795) DUF1664 PF07889.12 AJD68487.1 - 0.76 9.8 13.3 1 9.4 2.3 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 AJD68487.1 - 3 7.9 27.1 0.21 11.6 3.5 4.8 5 1 0 5 5 5 0 Laminin Domain II DUF948 PF06103.11 AJD68487.1 - 3.2 8.1 19.6 9.1 6.6 4.7 5.6 3 2 3 6 6 6 0 Bacterial protein of unknown function (DUF948) SKA2 PF16740.5 AJD68487.1 - 3.9 7.3 15.0 3.6 7.4 0.8 4.6 4 0 0 4 4 4 0 Spindle and kinetochore-associated protein 2 PMC2NT PF08066.12 AJD68487.1 - 9.7 7.0 8.8 34 5.2 0.0 4.2 4 1 1 5 5 5 0 PMC2NT (NUC016) domain MCPsignal PF00015.21 AJD68488.1 - 5.8e-53 179.2 19.4 5.8e-53 179.2 19.4 3.3 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 AJD68488.1 - 1.5e-19 70.2 0.2 1.5e-19 70.2 0.2 5.1 7 0 0 7 7 7 1 Four helix bundle sensory module for signal transduction HAMP_N3 PF18575.1 AJD68488.1 - 2e-17 62.5 1.4 2.3e-15 55.9 0.1 3.9 4 0 0 4 4 4 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68488.1 - 7.4e-12 45.5 9.6 6.4e-09 36.1 0.8 5.9 5 0 0 5 5 5 1 HAMP domain Laminin_II PF06009.12 AJD68488.1 - 0.011 15.7 2.2 0.011 15.7 2.2 4.7 6 1 1 7 7 7 0 Laminin Domain II IFT57 PF10498.9 AJD68488.1 - 0.025 13.5 8.3 0.75 8.7 0.1 2.9 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 SKA2 PF16740.5 AJD68488.1 - 0.41 10.4 17.2 0.73 9.6 1.1 4.9 5 1 0 5 5 5 0 Spindle and kinetochore-associated protein 2 Nup54 PF13874.6 AJD68488.1 - 0.66 10.1 8.7 0.25 11.4 0.3 3.6 3 0 0 3 3 3 0 Nucleoporin complex subunit 54 DUF1664 PF07889.12 AJD68488.1 - 0.7 9.9 17.3 0.45 10.6 2.0 4.9 5 1 0 5 5 5 0 Protein of unknown function (DUF1664) UPF0242 PF06785.11 AJD68488.1 - 1.3 9.1 7.0 8.1 6.5 0.1 3.8 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus BLOC1_2 PF10046.9 AJD68488.1 - 1.6 9.1 15.3 1.4 9.3 0.3 4.9 5 1 0 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tweety PF04906.13 AJD68488.1 - 2.3 6.8 8.4 5.2 5.6 0.4 3.3 3 0 0 3 3 3 0 Tweety Fib_alpha PF08702.10 AJD68488.1 - 3 8.0 6.8 27 4.9 0.7 3.9 4 0 0 4 4 4 0 Fibrinogen alpha/beta chain family DUF4936 PF16290.5 AJD68488.1 - 8.2 7.2 7.1 21 5.9 0.1 4.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4936) MCPsignal PF00015.21 AJD68489.1 - 7.5e-54 182.1 21.1 7.5e-54 182.1 21.1 3.7 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 AJD68489.1 - 2.3e-17 63.1 0.0 2.3e-17 63.1 0.0 3.8 3 1 1 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP_N3 PF18575.1 AJD68489.1 - 8.3e-11 41.3 0.3 1.6e-08 34.0 0.0 3.7 3 0 0 3 3 3 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68489.1 - 4e-09 36.7 16.9 9.1e-07 29.2 0.2 6.9 7 1 1 8 8 6 1 HAMP domain Laminin_II PF06009.12 AJD68489.1 - 0.0031 17.5 5.5 0.0031 17.5 5.5 3.7 4 0 0 4 4 4 2 Laminin Domain II DUF1664 PF07889.12 AJD68489.1 - 0.01 15.9 14.3 0.3 11.1 5.8 4.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) DUF2379 PF09543.10 AJD68489.1 - 0.051 13.8 0.0 0.051 13.8 0.0 4.5 4 2 2 6 6 5 0 Protein of unknown function (DUF2379) SKA1 PF07160.12 AJD68489.1 - 0.074 12.9 0.9 0.96 9.2 0.1 2.8 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 ApoLp-III PF07464.11 AJD68489.1 - 0.11 12.6 20.5 1.3 9.1 0.7 3.3 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) V_ATPase_I PF01496.19 AJD68489.1 - 0.2 9.5 2.2 8.1 4.2 0.2 2.9 3 0 0 3 3 3 0 V-type ATPase 116kDa subunit family DUF4200 PF13863.6 AJD68489.1 - 0.39 11.1 10.1 2.2 8.7 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) Sigma70_ner PF04546.13 AJD68489.1 - 0.62 9.9 10.3 0.25 11.2 0.1 3.6 3 2 0 3 3 3 0 Sigma-70, non-essential region DUF1640 PF07798.11 AJD68489.1 - 0.63 10.1 12.0 0.36 10.9 0.5 3.3 3 1 0 3 3 2 0 Protein of unknown function (DUF1640) Exonuc_VII_S PF02609.16 AJD68489.1 - 0.66 10.1 4.2 36 4.5 0.4 3.8 3 0 0 3 3 3 0 Exonuclease VII small subunit Prominin PF05478.11 AJD68489.1 - 1.1 7.1 8.4 0.33 8.9 0.3 2.7 1 1 2 3 3 3 0 Prominin zf-C4H2 PF10146.9 AJD68489.1 - 1.1 9.5 5.7 0.57 10.5 0.2 2.7 3 0 0 3 3 3 0 Zinc finger-containing protein ING PF12998.7 AJD68489.1 - 1.9 9.1 5.7 4.8 7.8 0.1 3.2 3 0 0 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Mod_r PF07200.13 AJD68489.1 - 2 8.5 17.9 2.6 8.1 3.1 3.8 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein UPF0242 PF06785.11 AJD68489.1 - 2.3 8.3 11.1 2.9 8.0 1.8 3.3 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus YabA PF06156.13 AJD68489.1 - 2.5 8.8 11.1 12 6.6 0.1 4.2 3 0 0 3 3 3 0 Initiation control protein YabA Fib_alpha PF08702.10 AJD68489.1 - 3.2 7.9 6.4 6.4 7.0 0.9 3.1 3 0 0 3 3 2 0 Fibrinogen alpha/beta chain family Rootletin PF15035.6 AJD68489.1 - 3.5 7.6 13.2 1.4 8.9 1.3 3.4 3 0 0 3 3 3 0 Ciliary rootlet component, centrosome cohesion DUF3450 PF11932.8 AJD68489.1 - 4.6 6.5 27.3 4.4 6.5 2.3 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) IFT57 PF10498.9 AJD68489.1 - 5.3 5.9 11.1 2.3 7.1 2.3 2.6 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Nup54 PF13874.6 AJD68489.1 - 6.5 6.9 15.0 1.8 8.7 1.7 3.6 3 0 0 3 3 3 0 Nucleoporin complex subunit 54 Mce4_CUP1 PF11887.8 AJD68489.1 - 6.8 6.1 8.6 3 7.2 1.9 3.0 3 0 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative MCPsignal PF00015.21 AJD68490.1 - 1.6e-52 177.8 21.5 1.6e-52 177.8 21.5 3.8 2 1 2 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 AJD68490.1 - 7.6e-06 25.9 0.1 0.091 12.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold 4HB_MCP_1 PF12729.7 AJD68490.1 - 0.00031 20.4 0.0 0.00031 20.4 0.0 3.7 3 1 0 3 3 3 1 Four helix bundle sensory module for signal transduction PAS_9 PF13426.7 AJD68490.1 - 0.0013 19.0 0.0 0.0031 17.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 AJD68490.1 - 0.0038 17.4 0.0 0.0038 17.4 0.0 3.2 3 1 0 3 3 3 1 PAS fold PAS_4 PF08448.10 AJD68490.1 - 0.013 15.7 4.0 0.02 15.2 0.8 3.2 3 1 0 3 3 2 0 PAS fold PAS_8 PF13188.7 AJD68490.1 - 0.015 15.3 0.0 0.052 13.6 0.0 2.0 1 0 0 1 1 1 0 PAS domain DUF2887 PF11103.8 AJD68490.1 - 0.019 15.0 0.7 0.25 11.3 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2887) DUF1664 PF07889.12 AJD68490.1 - 0.021 14.9 15.4 0.31 11.1 3.6 5.0 5 2 1 6 6 6 0 Protein of unknown function (DUF1664) IFT57 PF10498.9 AJD68490.1 - 0.053 12.5 5.0 0.061 12.3 0.2 2.5 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Laminin_II PF06009.12 AJD68490.1 - 0.11 12.5 16.1 0.65 10.0 3.0 3.8 4 0 0 4 4 4 0 Laminin Domain II CEP209_CC5 PF16574.5 AJD68490.1 - 0.13 12.5 7.8 2.9 8.1 0.0 3.8 5 0 0 5 5 5 0 Coiled-coil region of centrosome protein CE290 Atg14 PF10186.9 AJD68490.1 - 0.2 10.7 3.4 0.15 11.2 0.3 2.1 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 HAMP PF00672.25 AJD68490.1 - 0.21 12.0 13.9 40 4.7 0.2 6.6 6 1 0 6 6 6 0 HAMP domain YabA PF06156.13 AJD68490.1 - 1.2 9.8 7.6 11 6.7 0.0 4.2 4 1 0 4 4 4 0 Initiation control protein YabA ApoLp-III PF07464.11 AJD68490.1 - 3.4 7.7 18.6 0.27 11.3 2.4 3.6 3 1 0 3 3 2 0 Apolipophorin-III precursor (apoLp-III) Vps53_N PF04100.12 AJD68490.1 - 5.3 5.9 9.6 3.6 6.5 2.4 2.3 2 0 0 2 2 2 0 Vps53-like, N-terminal DUF4200 PF13863.6 AJD68490.1 - 9.3 6.7 11.2 0.37 11.2 0.1 3.5 5 0 0 5 5 3 0 Domain of unknown function (DUF4200) Phenol_MetA_deg PF13557.6 AJD68491.1 - 2.8e-18 66.8 0.9 3.2e-18 66.6 0.9 1.0 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation MCPsignal PF00015.21 AJD68492.1 - 6.8e-55 185.5 33.5 3.8e-54 183.1 20.0 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 AJD68492.1 - 2.1e-15 57.2 0.0 2.1e-15 57.2 0.0 3.2 3 1 0 3 3 3 1 Cache domain HAMP PF00672.25 AJD68492.1 - 7.8e-13 48.6 14.4 4.8e-10 39.7 2.0 5.4 6 0 0 6 6 6 2 HAMP domain Cache_3-Cache_2 PF17201.4 AJD68492.1 - 0.0064 15.8 0.0 0.0064 15.8 0.0 3.7 4 1 0 4 4 4 2 Cache 3/Cache 2 fusion domain IFT57 PF10498.9 AJD68492.1 - 0.016 14.2 4.3 0.85 8.5 0.1 2.3 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF2887 PF11103.8 AJD68492.1 - 0.018 15.1 0.5 0.054 13.5 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) PAS PF00989.25 AJD68492.1 - 0.022 14.8 0.0 0.084 12.9 0.0 2.1 1 0 0 1 1 1 0 PAS fold BLOC1_2 PF10046.9 AJD68492.1 - 0.045 14.0 7.5 0.57 10.5 0.2 3.8 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec8_exocyst PF04048.14 AJD68492.1 - 3.9 7.4 8.7 0.89 9.4 0.5 3.3 3 1 1 4 4 4 0 Sec8 exocyst complex component specific domain Mod_r PF07200.13 AJD68492.1 - 5.5 7.1 11.0 7.4 6.7 0.4 3.4 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein MCPsignal PF00015.21 AJD68493.1 - 3.5e-54 183.2 19.9 3.5e-54 183.2 19.9 4.4 3 1 1 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_2 PF17200.4 AJD68493.1 - 8.7e-42 142.6 0.0 8.7e-42 142.6 0.0 3.1 3 0 0 3 3 3 1 Single Cache domain 2 dCache_2 PF08269.11 AJD68493.1 - 5.6e-36 124.2 2.9 9.3e-36 123.5 0.0 2.4 3 0 0 3 3 3 1 Cache domain HAMP_N3 PF18575.1 AJD68493.1 - 1.5e-12 46.9 1.2 5.3e-09 35.5 0.0 4.7 5 0 0 5 5 5 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68493.1 - 1.7e-10 41.1 9.5 7.4e-06 26.2 0.2 6.7 6 0 0 6 6 6 2 HAMP domain Cache_3-Cache_2 PF17201.4 AJD68493.1 - 5.4e-10 39.0 0.0 5.4e-10 39.0 0.0 3.4 2 1 2 4 4 4 1 Cache 3/Cache 2 fusion domain sCache_3_2 PF17203.4 AJD68493.1 - 0.0088 16.2 0.0 0.0088 16.2 0.0 3.8 3 1 1 4 4 3 1 Single cache domain 3 DUF4200 PF13863.6 AJD68493.1 - 0.072 13.5 4.1 1.2 9.6 0.1 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF1664 PF07889.12 AJD68493.1 - 0.25 11.4 18.7 0.61 10.1 6.3 4.4 3 2 0 3 3 3 0 Protein of unknown function (DUF1664) DUF211 PF02680.14 AJD68493.1 - 0.42 10.8 5.5 0.13 12.5 0.8 2.6 3 0 0 3 3 2 0 Uncharacterized ArCR, COG1888 Mod_r PF07200.13 AJD68493.1 - 0.68 10.0 10.6 1.7 8.8 1.2 3.2 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein IFT57 PF10498.9 AJD68493.1 - 0.8 8.6 5.8 1.5 7.7 0.1 2.2 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 PRKG1_interact PF15898.5 AJD68493.1 - 0.85 10.6 6.1 13 6.8 0.5 3.5 3 0 0 3 3 3 0 cGMP-dependent protein kinase interacting domain Laminin_II PF06009.12 AJD68493.1 - 0.88 9.6 25.7 0.78 9.8 4.5 3.6 3 1 0 4 4 4 0 Laminin Domain II UPF0242 PF06785.11 AJD68493.1 - 1.8 8.6 5.1 16 5.5 0.9 3.2 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Fib_alpha PF08702.10 AJD68493.1 - 3.3 7.9 6.8 13 5.9 1.6 3.0 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 AJD68493.1 - 4.2 6.6 20.4 3.7 6.8 8.9 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Sec34 PF04136.15 AJD68493.1 - 5.5 6.9 6.0 6.1 6.7 0.5 3.0 3 0 0 3 3 3 0 Sec34-like family TMPIT PF07851.13 AJD68493.1 - 5.7 6.1 7.4 10 5.3 0.5 2.4 2 0 0 2 2 2 0 TMPIT-like protein DUF948 PF06103.11 AJD68493.1 - 5.7 7.3 34.5 1.2 9.5 1.3 6.8 5 3 1 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF2887 PF11103.8 AJD68493.1 - 6 6.8 8.2 0.37 10.8 2.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2887) RIFIN PF02009.16 AJD68493.1 - 7.4 6.4 20.0 3.4 7.5 10.9 2.4 2 0 0 2 2 2 0 Rifin 4HB_MCP_1 PF12729.7 AJD68494.1 - 0.0033 17.0 0.0 0.0045 16.6 0.0 1.1 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction DUF1003 PF06210.11 AJD68494.1 - 0.072 13.2 0.2 2.7 8.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) MCPsignal PF00015.21 AJD68495.1 - 4.3e-54 182.9 35.2 2.5e-53 180.4 20.6 3.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 AJD68495.1 - 6.9e-22 77.9 0.2 6.9e-22 77.9 0.2 4.2 5 2 2 7 7 7 1 Four helix bundle sensory module for signal transduction HAMP_N3 PF18575.1 AJD68495.1 - 9.2e-20 70.0 0.4 2.4e-17 62.2 0.0 3.8 4 0 0 4 4 4 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD68495.1 - 2.4e-14 53.4 13.6 2.1e-10 40.8 0.4 6.3 6 0 0 6 6 6 3 HAMP domain TarH PF02203.15 AJD68495.1 - 1.4e-10 41.4 6.5 1.4e-10 41.4 6.5 5.7 5 1 1 6 6 6 1 Tar ligand binding domain homologue IFT57 PF10498.9 AJD68495.1 - 0.016 14.2 6.8 0.8 8.6 1.0 2.6 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF1664 PF07889.12 AJD68495.1 - 0.062 13.3 16.8 0.73 9.9 3.2 4.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1664) DUF2887 PF11103.8 AJD68495.1 - 0.093 12.7 0.7 0.25 11.3 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) DUF4200 PF13863.6 AJD68495.1 - 0.29 11.5 3.2 1.7 9.1 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) Laminin_II PF06009.12 AJD68495.1 - 0.39 10.7 25.6 0.033 14.2 3.3 4.2 3 1 1 4 4 4 0 Laminin Domain II TolA_bind_tri PF16331.5 AJD68495.1 - 0.52 10.4 0.0 0.52 10.4 0.0 4.6 4 2 2 6 6 6 0 TolA binding protein trimerisation Prominin PF05478.11 AJD68495.1 - 2 6.3 8.1 0.89 7.4 1.8 2.7 1 1 1 2 2 2 0 Prominin Syntaxin_2 PF14523.6 AJD68495.1 - 3.2 8.2 7.8 9.2 6.7 0.0 3.8 2 2 1 3 3 3 0 Syntaxin-like protein Atg14 PF10186.9 AJD68495.1 - 4 6.4 11.8 7.6 5.5 0.0 3.2 2 1 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 BLOC1_2 PF10046.9 AJD68495.1 - 4.9 7.5 13.9 31 4.9 0.7 4.8 4 0 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CheW PF01584.19 AJD68496.1 - 2.8e-27 95.0 0.5 4.8e-27 94.3 0.5 1.4 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 AJD68496.1 - 7.3e-19 67.8 1.4 1.5e-18 66.9 0.3 2.2 2 1 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 AJD68496.1 - 3.5e-16 59.7 0.1 1e-15 58.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 AJD68496.1 - 4.3e-16 59.0 0.5 9.6e-16 57.9 0.5 1.6 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 AJD68496.1 - 0.044 13.6 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD68496.1 - 0.26 11.2 0.0 0.26 11.2 0.0 2.3 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 AJD68497.1 - 1.4e-27 96.0 0.0 1.6e-27 95.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 AJD68497.1 - 0.0036 17.7 0.0 0.0047 17.3 0.0 1.1 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ STAS_2 PF13466.6 AJD68498.1 - 1.7e-13 50.7 1.8 2e-13 50.5 1.8 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 AJD68498.1 - 0.00024 20.7 0.0 0.00027 20.5 0.0 1.0 1 0 0 1 1 1 1 STAS domain LIP1 PF15904.5 AJD68498.1 - 0.025 14.9 0.1 0.037 14.4 0.1 1.2 1 0 0 1 1 1 0 LKB1 serine/threonine kinase interacting protein 1 CheW PF01584.19 AJD68499.1 - 2.2e-30 105.1 0.3 3.1e-30 104.6 0.3 1.2 1 0 0 1 1 1 1 CheW-like domain Nif11 PF07862.11 AJD68499.1 - 4.5e-07 30.1 5.6 6 7.3 0.0 5.6 2 1 4 6 6 6 4 Nif11 domain AAA_31 PF13614.6 AJD68500.1 - 2.3e-38 131.9 0.0 3e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AJD68500.1 - 3.3e-19 69.2 0.0 4.1e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 AJD68500.1 - 1.7e-11 44.0 0.1 5.6e-11 42.4 0.1 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 AJD68500.1 - 1.5e-09 37.5 0.0 6.3e-09 35.4 0.0 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 AJD68500.1 - 6.6e-09 35.4 0.0 5.8e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 AJD68500.1 - 1.4e-08 34.5 0.7 1.9e-07 30.8 0.7 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 AJD68500.1 - 2.9e-05 23.5 0.0 0.0025 17.1 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein Fer4_NifH PF00142.18 AJD68500.1 - 0.00016 21.3 0.0 0.0003 20.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MeaB PF03308.16 AJD68500.1 - 0.0048 15.9 0.0 0.0077 15.3 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Glyco_transf_4 PF13439.6 AJD68500.1 - 0.022 14.7 0.1 0.17 11.9 0.1 2.1 1 1 0 1 1 1 0 Glycosyltransferase Family 4 FTHFS PF01268.19 AJD68500.1 - 0.11 10.7 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase DUF1611 PF07755.11 AJD68500.1 - 0.14 11.4 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain MotB_plug PF13677.6 AJD68501.1 - 1.2e-22 79.2 0.1 2.1e-22 78.5 0.1 1.4 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 AJD68501.1 - 4.8e-17 62.1 1.5 1.4e-16 60.7 0.0 2.4 4 0 0 4 4 4 1 OmpA family MotA_ExbB PF01618.16 AJD68502.1 - 3.5e-28 97.9 0.4 3.5e-28 97.9 0.4 2.8 2 1 1 3 3 3 1 MotA/TolQ/ExbB proton channel family HXXEE PF13787.6 AJD68502.1 - 0.31 11.9 4.0 5.1 7.9 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function with HXXEE motif DUF3784 PF12650.7 AJD68502.1 - 0.43 10.8 7.4 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) TonB_dep_Rec PF00593.24 AJD68504.1 - 4.5e-40 138.9 37.6 4.5e-40 138.9 37.6 2.3 2 0 0 2 2 2 2 TonB dependent receptor Plug PF07715.15 AJD68504.1 - 8.5e-16 58.5 0.7 8.5e-16 58.5 0.7 2.6 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD68504.1 - 3.7e-07 29.5 3.3 3.7e-07 29.5 3.3 4.7 5 1 0 5 5 5 2 Outer membrane protein beta-barrel family Pkinase PF00069.25 AJD68505.1 - 1.2e-30 106.7 0.0 1.4e-30 106.6 0.0 1.0 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 AJD68505.1 - 9.3e-17 61.2 0.0 1.1e-16 60.9 0.0 1.0 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 AJD68505.1 - 3.3e-06 27.2 2.6 0.01 15.8 0.3 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 AJD68505.1 - 0.092 11.5 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase SymE_toxin PF08845.10 AJD68508.1 - 1.2e-15 57.2 0.0 1.7e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system DDE_Tnp_1 PF01609.21 AJD68510.1 - 6.6e-27 94.5 0.1 1.2e-25 90.5 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain HemolysinCabind PF00353.19 AJD68513.1 - 8e-11 41.7 14.9 8e-11 41.7 14.9 2.8 2 1 0 2 2 2 1 RTX calcium-binding nonapeptide repeat (4 copies) rve PF00665.26 AJD68514.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD68514.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD68514.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD68515.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68515.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68515.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD68515.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD68515.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD68515.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD68515.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD68515.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68515.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD68515.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD68515.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD68515.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD68515.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD68515.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD68515.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD68515.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD68515.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD68515.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD68515.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD68515.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD68515.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve_3 PF13683.6 AJD68518.1 - 1.3e-20 72.9 0.1 2.5e-20 72.0 0.0 1.5 2 0 0 2 2 2 1 Integrase core domain rve_2 PF13333.6 AJD68518.1 - 1.4e-05 25.1 0.1 2e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AJD68518.1 - 0.041 14.1 0.0 0.063 13.5 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain HTH_3 PF01381.22 AJD68519.1 - 8.4e-08 32.2 0.0 1.5e-07 31.3 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 AJD68519.1 - 2.1e-06 27.9 1.4 2.1e-06 27.9 1.4 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 AJD68519.1 - 2.5e-06 27.5 0.0 3.9e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 AJD68519.1 - 9.2e-05 22.2 0.6 0.00015 21.6 0.6 1.4 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 AJD68519.1 - 0.00013 21.9 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 AJD68519.1 - 0.0077 16.2 0.6 0.015 15.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain P22_Cro PF14549.6 AJD68519.1 - 0.0093 15.8 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_24 PF13412.6 AJD68519.1 - 0.012 15.2 0.1 0.032 13.8 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AJD68519.1 - 0.031 14.1 0.4 0.031 14.1 0.4 2.3 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain MarR PF01047.22 AJD68519.1 - 0.032 14.2 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 AJD68519.1 - 0.037 13.9 3.3 0.31 11.0 0.5 2.4 2 0 0 2 2 2 0 MarR family SlyX PF04102.12 AJD68520.1 - 0.0067 17.0 0.3 3.8 8.2 0.0 2.2 2 0 0 2 2 2 2 SlyX CLZ PF16526.5 AJD68520.1 - 0.011 16.1 0.9 1 9.7 0.1 2.1 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels COG5 PF10392.9 AJD68520.1 - 0.017 15.3 0.1 1.6 8.9 0.0 2.0 1 1 1 2 2 2 0 Golgi transport complex subunit 5 CENP-Q PF13094.6 AJD68520.1 - 0.056 13.7 0.1 1.7 8.8 0.0 2.0 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit MbeD_MobD PF04899.12 AJD68520.1 - 0.058 13.5 0.7 2.4 8.3 0.1 2.2 2 0 0 2 2 2 0 MbeD/MobD like LPP PF04728.13 AJD68520.1 - 0.15 12.4 0.1 1.7 9.1 0.0 2.1 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Utp8 PF10395.9 AJD68520.1 - 0.2 10.1 0.0 0.24 9.9 0.0 1.0 1 0 0 1 1 1 0 Utp8 family Radical_SAM PF04055.21 AJD68521.1 - 9.4e-09 35.9 0.0 1.4e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 AJD68521.1 - 4.5e-06 27.0 0.0 7.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 AJD68521.1 - 2.5e-05 24.4 0.0 4.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Lip_A_acyltrans PF03279.13 AJD68522.1 - 0.0076 15.5 0.0 0.015 14.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase DDE_Tnp_1 PF01609.21 AJD68523.1 - 6.7e-27 94.5 0.1 1.2e-25 90.4 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain CheW PF01584.19 AJD68524.1 - 1.8e-26 92.5 0.1 3.2e-26 91.6 0.1 1.4 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 AJD68524.1 - 3.1e-19 69.5 0.0 5.2e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 AJD68524.1 - 3.7e-16 59.2 3.5 1.3e-15 57.4 3.5 2.0 1 0 0 1 1 1 1 Hpt domain H-kinase_dim PF02895.14 AJD68524.1 - 4.4e-12 46.2 4.1 1.2e-11 44.8 4.1 1.8 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 AJD68524.1 - 0.001 18.9 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD68524.1 - 0.048 13.6 0.0 0.16 12.0 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CheZ PF04344.13 AJD68525.1 - 2.7e-27 96.0 0.0 1.3e-13 51.3 0.0 2.4 1 1 1 2 2 2 2 Chemotaxis phosphatase, CheZ SseC PF04888.12 AJD68525.1 - 0.048 13.3 0.0 0.056 13.0 0.0 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family RraB PF06877.11 AJD68525.1 - 0.068 13.9 0.0 0.12 13.2 0.0 1.4 1 0 0 1 1 1 0 Regulator of ribonuclease activity B FUSC PF04632.12 AJD68525.1 - 0.092 11.3 8.2 0.11 11.0 8.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2408 PF10303.9 AJD68525.1 - 0.11 13.1 0.2 0.18 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4164 PF13747.6 AJD68525.1 - 0.15 12.4 9.2 2.9 8.2 0.7 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) ArnB_C PF18677.1 AJD68525.1 - 0.16 12.1 0.6 0.69 10.1 0.1 2.1 2 0 0 2 2 2 0 Archaellum regulatory network B, C-terminal domain MscS_porin PF12795.7 AJD68525.1 - 0.41 10.2 6.3 1.4 8.4 0.3 2.1 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Response_reg PF00072.24 AJD68526.1 - 5.4e-31 107.1 0.0 6.1e-31 106.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain BRCT_3 PF18428.1 AJD68526.1 - 0.084 12.9 0.0 0.16 12.1 0.0 1.5 1 1 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain Sigma70_r4 PF04545.16 AJD68527.1 - 8.9e-18 63.5 0.2 2.3e-17 62.2 0.2 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD68527.1 - 1.5e-17 63.1 0.1 3.2e-17 62.1 0.1 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r3 PF04539.16 AJD68527.1 - 1.4e-13 50.7 0.6 9.8e-13 48.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 AJD68527.1 - 2.5e-08 33.5 0.1 5.2e-08 32.4 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AJD68527.1 - 0.0085 15.9 0.0 0.041 13.7 0.0 2.1 1 0 0 1 1 1 1 Homeodomain-like domain CbiA PF01656.23 AJD68528.1 - 1.9e-21 76.5 0.0 2.6e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 AJD68528.1 - 2.2e-21 76.4 2.3 4.4e-10 39.4 1.2 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 AJD68528.1 - 5.9e-15 55.6 0.0 8.4e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 AJD68528.1 - 1.8e-11 44.0 0.0 3.2e-11 43.2 0.0 1.4 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 AJD68528.1 - 2.4e-08 33.5 3.6 2.5e-08 33.5 0.5 2.2 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 AJD68528.1 - 1.3e-06 27.9 3.8 1.4e-05 24.5 3.8 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 AJD68528.1 - 2e-06 27.8 1.7 0.0022 17.9 0.1 2.9 2 1 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 AJD68528.1 - 1.1e-05 25.1 4.0 3.8e-05 23.3 2.0 2.4 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 AJD68528.1 - 7.4e-05 22.6 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 AJD68528.1 - 0.032 14.0 0.4 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 AJD68528.1 - 0.086 12.7 0.2 0.18 11.7 0.2 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 AJD68528.1 - 0.1 12.1 0.6 0.37 10.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.11 AJD68528.1 - 0.15 11.4 1.2 1.1 8.5 0.4 2.1 2 0 0 2 2 2 0 VirC1 protein SRP54 PF00448.22 AJD68528.1 - 0.29 10.7 2.3 0.53 9.9 0.7 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SRP54 PF00448.22 AJD68529.1 - 4.2e-38 130.9 0.0 6.9e-38 130.2 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 AJD68529.1 - 8.1e-07 29.4 0.0 2.1e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AJD68529.1 - 4.8e-06 26.6 0.0 9.6e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 AJD68529.1 - 1.2e-05 25.2 0.8 1.2e-05 25.2 0.8 2.2 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AJD68529.1 - 4.1e-05 23.2 3.2 4.8e-05 23.0 0.8 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 AJD68529.1 - 6.1e-05 23.3 0.5 0.00033 20.9 0.5 2.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 AJD68529.1 - 0.00018 21.5 0.0 0.00078 19.5 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FtsK_SpoIIIE PF01580.18 AJD68529.1 - 0.00019 20.9 0.3 0.00058 19.3 0.0 1.9 3 0 0 3 3 3 1 FtsK/SpoIIIE family ABC_tran PF00005.27 AJD68529.1 - 0.00037 21.0 0.0 0.00083 19.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 AJD68529.1 - 0.00071 19.8 1.0 0.002 18.3 0.1 2.3 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 AJD68529.1 - 0.001 18.9 1.3 0.017 14.8 1.3 2.3 1 1 0 1 1 1 1 IstB-like ATP binding protein cobW PF02492.19 AJD68529.1 - 0.0015 18.2 0.0 0.004 16.8 0.0 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 AJD68529.1 - 0.0088 16.0 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 AJD68529.1 - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 AJD68529.1 - 0.014 15.4 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 AJD68529.1 - 0.018 15.4 0.6 0.048 14.0 0.6 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AJD68529.1 - 0.02 14.8 0.0 0.38 10.6 0.0 2.3 1 1 1 2 2 2 0 RsgA GTPase AAA PF00004.29 AJD68529.1 - 0.025 15.0 0.0 0.064 13.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 AJD68529.1 - 0.026 14.3 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SWI2_SNF2 PF18766.1 AJD68529.1 - 0.041 13.5 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 SWI2/SNF2 ATPase ATPase PF06745.13 AJD68529.1 - 0.043 13.2 0.0 0.076 12.3 0.0 1.3 1 0 0 1 1 1 0 KaiC Zeta_toxin PF06414.12 AJD68529.1 - 0.044 13.1 0.2 0.12 11.7 0.2 1.7 1 1 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 AJD68529.1 - 0.048 12.7 0.2 0.17 10.9 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein MeaB PF03308.16 AJD68529.1 - 0.05 12.6 0.4 2 7.3 0.4 2.3 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 AJD68529.1 - 0.052 14.0 0.0 0.16 12.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 AJD68529.1 - 0.059 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 AJD68529.1 - 0.065 13.7 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 AJD68529.1 - 0.097 12.2 0.1 0.24 10.9 0.0 1.6 2 0 0 2 2 1 0 Elongation factor Tu GTP binding domain AAA_7 PF12775.7 AJD68529.1 - 0.098 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF87 PF01935.17 AJD68529.1 - 0.14 12.3 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_18 PF13238.6 AJD68529.1 - 0.17 12.4 0.0 0.33 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AJD68529.1 - 0.19 11.5 0.0 0.47 10.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 AJD68529.1 - 0.21 12.0 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 AJD68529.1 - 0.24 11.4 0.0 0.43 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Erythro_esteras PF05139.14 AJD68529.1 - 3.5 7.4 8.1 0.14 12.0 0.2 2.2 2 1 0 2 2 2 0 Erythromycin esterase AAA_16 PF13191.6 AJD68529.1 - 4.1 7.8 19.0 0.047 14.1 5.4 3.6 2 2 0 2 2 1 0 AAA ATPase domain FHIPEP PF00771.20 AJD68530.1 - 2.7e-257 855.6 4.1 3e-257 855.4 4.1 1.0 1 0 0 1 1 1 1 FHIPEP family DUF4896 PF16237.5 AJD68530.1 - 0.11 12.4 3.3 0.41 10.5 3.3 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4896) Bac_export_2 PF01312.19 AJD68531.1 - 4.8e-120 400.7 0.0 5.4e-120 400.6 0.0 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family EAL PF00563.20 AJD68532.1 - 3e-77 259.4 0.1 6.5e-77 258.3 0.0 1.6 2 0 0 2 2 2 1 EAL domain MHYT PF03707.16 AJD68532.1 - 1.9e-47 159.3 44.7 1.7e-19 69.7 3.3 5.7 5 0 0 5 5 5 4 Bacterial signalling protein N terminal repeat GGDEF PF00990.21 AJD68532.1 - 2e-43 148.0 0.1 3.1e-43 147.3 0.1 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AJD68532.1 - 0.014 15.6 0.5 0.077 13.3 0.5 2.4 1 0 0 1 1 1 0 GGDEF-like domain GGDEF PF00990.21 AJD68533.1 - 1.4e-43 148.5 0.0 2.1e-43 147.8 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Reg_prop PF07494.11 AJD68533.1 - 3.3e-25 85.0 19.0 0.031 14.5 0.1 12.2 13 0 0 13 13 13 6 Two component regulator propeller Y_Y_Y PF07495.13 AJD68533.1 - 8e-10 38.5 0.0 1.9e-09 37.3 0.0 1.7 1 0 0 1 1 1 1 Y_Y_Y domain PSII_BNR PF14870.6 AJD68533.1 - 0.00018 20.9 0.8 0.00018 20.9 0.8 1.9 2 0 0 2 2 2 1 Photosynthesis system II assembly factor YCF48 DUF5074 PF16819.5 AJD68533.1 - 0.0095 16.0 0.5 16 5.5 0.0 5.2 6 0 0 6 6 6 1 Domain of unknown function (DUF5074) Alpha-mann_mid PF09261.11 AJD68533.1 - 0.069 13.3 0.1 0.15 12.3 0.1 1.4 1 0 0 1 1 1 0 Alpha mannosidase middle domain DUF2793 PF10983.8 AJD68533.1 - 0.13 12.2 5.3 4.7 7.2 0.1 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2793) GGDEF PF00990.21 AJD68534.1 - 1.7e-39 135.2 0.0 2.5e-39 134.6 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Reg_prop PF07494.11 AJD68534.1 - 1.1e-24 83.3 8.7 0.00045 20.1 0.0 10.5 10 0 0 10 10 10 7 Two component regulator propeller Y_Y_Y PF07495.13 AJD68534.1 - 1.7e-12 47.1 0.0 3.1e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Y_Y_Y domain SGL PF08450.12 AJD68534.1 - 2e-07 30.9 0.2 2.3 7.7 0.0 6.0 3 2 2 6 6 6 4 SMP-30/Gluconolactonase/LRE-like region MAP17 PF15807.5 AJD68534.1 - 0.19 11.9 0.0 0.36 11.1 0.0 1.3 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 DUF2793 PF10983.8 AJD68534.1 - 1 9.3 5.9 6.3 6.8 0.1 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2793) Bac_export_1 PF01311.20 AJD68535.1 - 1.9e-57 194.5 24.6 2.2e-57 194.3 24.6 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Bac_export_3 PF01313.19 AJD68536.1 - 3.4e-20 71.7 8.6 4.7e-20 71.3 8.6 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 3 Bac_export_1 PF01311.20 AJD68536.1 - 0.0069 16.0 6.1 0.0081 15.7 6.1 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Diphtheria_T PF02764.14 AJD68536.1 - 0.026 14.5 1.0 0.029 14.4 1.0 1.1 1 0 0 1 1 1 0 Diphtheria toxin, T domain DUF5447 PF17525.2 AJD68537.1 - 0.47 11.0 6.7 0.38 11.2 4.2 2.2 2 1 0 2 2 2 0 Family of unknown function (DUF5447) FliP PF00813.20 AJD68538.1 - 3.3e-72 242.4 14.7 4.5e-72 242.0 14.7 1.2 1 0 0 1 1 1 1 FliP family FliO PF04347.13 AJD68539.1 - 7.3e-25 87.1 0.6 2e-24 85.7 0.1 1.7 2 0 0 2 2 2 1 Flagellar biosynthesis protein, FliO FliMN_C PF01052.20 AJD68540.1 - 9.9e-26 89.5 1.2 1.2e-25 89.3 1.2 1.1 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term FliM PF02154.15 AJD68541.1 - 6.6e-74 248.0 0.0 8.7e-74 247.6 0.0 1.2 1 0 0 1 1 1 1 Flagellar motor switch protein FliM FliMN_C PF01052.20 AJD68541.1 - 1.4e-19 69.9 0.0 2.4e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term FliL PF03748.14 AJD68542.1 - 1.4e-23 83.4 0.1 1.9e-23 83.0 0.1 1.2 1 0 0 1 1 1 1 Flagellar basal body-associated protein FliL ETRAMP PF09716.10 AJD68542.1 - 0.0013 18.8 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 Malarial early transcribed membrane protein (ETRAMP) DUF4366 PF14283.6 AJD68542.1 - 0.0025 17.9 1.5 0.016 15.3 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) DUF4448 PF14610.6 AJD68542.1 - 0.039 13.7 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4448) CwsA PF10814.8 AJD68542.1 - 0.06 13.5 0.2 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Cell wall synthesis protein CwsA Flg_hook PF02120.16 AJD68543.1 - 3.5e-24 84.5 0.8 7.6e-24 83.4 0.8 1.6 1 0 0 1 1 1 1 Flagellar hook-length control protein FliK Chorion_1 PF01723.16 AJD68543.1 - 0.33 10.9 8.4 0.66 9.9 8.4 1.5 1 0 0 1 1 1 0 Chorion protein Ndc1_Nup PF09531.10 AJD68543.1 - 2.9 6.5 6.0 4 6.0 6.0 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup FliJ PF02050.16 AJD68544.1 - 7.3e-22 77.9 17.5 9.6e-22 77.5 17.5 1.2 1 0 0 1 1 1 1 Flagellar FliJ protein Sec2p PF06428.11 AJD68544.1 - 0.0017 18.3 0.5 0.0017 18.3 0.5 2.4 2 1 0 2 2 2 1 GDP/GTP exchange factor Sec2p YscO-like PF16789.5 AJD68544.1 - 0.026 14.6 11.1 0.046 13.7 11.1 1.3 1 1 0 1 1 1 0 YscO-like protein DMSP_lyase PF16867.5 AJD68544.1 - 0.088 12.5 1.4 0.19 11.3 0.0 1.9 1 1 1 2 2 2 0 Dimethlysulfonioproprionate lyase DsrC PF04358.13 AJD68544.1 - 0.37 11.3 2.8 5.7 7.5 0.3 2.1 1 1 1 2 2 2 0 DsrC like protein DltD PF04914.12 AJD68544.1 - 0.56 9.5 4.1 0.66 9.3 4.1 1.1 1 0 0 1 1 1 0 DltD protein Spc7 PF08317.11 AJD68544.1 - 0.88 8.4 12.4 1.2 8.0 12.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Exonuc_VII_L PF02601.15 AJD68544.1 - 1.3 8.5 11.7 1.8 8.1 11.7 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit LMBR1 PF04791.16 AJD68544.1 - 3.7 6.3 5.9 4 6.3 5.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein ATP-synt_ab PF00006.25 AJD68545.1 - 7.5e-72 241.4 0.0 9.7e-72 241.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 AJD68545.1 - 2.2e-21 75.5 0.0 3.7e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain ABC_tran PF00005.27 AJD68545.1 - 0.0058 17.1 0.1 0.011 16.3 0.1 1.4 1 0 0 1 1 1 1 ABC transporter FliH PF02108.16 AJD68546.1 - 1.9e-20 73.2 0.0 2.4e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Flagellar assembly protein FliH NolV PF06635.12 AJD68546.1 - 0.0049 16.3 0.9 0.012 15.0 0.9 1.5 1 1 0 1 1 1 1 Nodulation protein NolV FliG_N PF14842.6 AJD68547.1 - 8.3e-44 148.4 1.8 6.2e-33 113.5 0.1 3.2 3 0 0 3 3 3 2 FliG N-terminal domain FliG_C PF01706.16 AJD68547.1 - 3.7e-43 146.1 8.0 4.4e-39 133.0 1.0 3.1 3 0 0 3 3 3 3 FliG C-terminal domain FliG_M PF14841.6 AJD68547.1 - 8.6e-34 115.6 8.0 2.7e-26 91.6 0.5 3.9 4 1 0 4 4 4 2 FliG middle domain MgtE_N PF03448.17 AJD68547.1 - 6.1e-11 42.8 6.9 0.00046 20.7 0.4 3.9 3 1 1 4 4 4 3 MgtE intracellular N domain PqqD PF05402.12 AJD68547.1 - 0.39 11.1 1.9 9.8 6.6 0.0 3.5 4 1 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) YscJ_FliF PF01514.17 AJD68548.1 - 2.3e-66 223.2 0.0 5.7e-66 221.9 0.0 1.7 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family YscJ_FliF_C PF08345.11 AJD68548.1 - 1.4e-44 152.1 1.4 2.6e-44 151.2 0.1 2.1 2 0 0 2 2 2 1 Flagellar M-ring protein C-terminal FliE PF02049.18 AJD68549.1 - 3e-28 97.8 0.5 3e-28 97.8 0.5 1.4 2 0 0 2 2 2 1 Flagellar hook-basal body complex protein FliE DUF86 PF01934.17 AJD68549.1 - 0.0073 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF86 Glycos_transf_2 PF00535.26 AJD68550.1 - 2.3e-28 99.1 0.0 1.3e-15 57.7 0.0 2.9 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD68550.1 - 1.9e-15 57.4 0.1 2.3e-06 27.7 0.0 3.3 3 0 0 3 3 3 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 AJD68550.1 - 2.4e-05 24.0 0.0 0.076 12.5 0.0 3.1 3 0 0 3 3 3 2 Glycosyltransferase like family 2 Glyco_trans_1_4 PF13692.6 AJD68550.1 - 0.00028 21.3 0.0 0.0023 18.4 0.0 2.6 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 AJD68550.1 - 0.00077 19.8 0.9 0.0042 17.4 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_2_3 PF13632.6 AJD68550.1 - 0.003 17.5 0.8 0.19 11.6 0.0 3.2 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Methyltransf_21 PF05050.12 AJD68552.1 - 2.3e-08 34.3 0.0 4.2e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain DUF3320 PF11784.8 AJD68552.1 - 0.12 12.3 0.3 5.7 7.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) Hexapep PF00132.24 AJD68553.1 - 2.6e-12 46.0 18.6 2.4e-06 27.0 2.2 4.1 2 2 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD68553.1 - 0.009 15.7 17.2 0.1 12.3 2.7 3.6 1 1 3 4 4 4 3 Hexapeptide repeat of succinyl-transferase Rieske PF00355.26 AJD68554.1 - 2.6e-14 52.9 0.0 5e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 AJD68554.1 - 3.6e-13 50.0 4.0 5.4e-13 49.4 4.0 1.2 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Hexapep PF00132.24 AJD68555.1 - 1.3e-15 56.4 8.3 4.5e-06 26.2 3.3 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AJD68555.1 - 9.8e-10 38.0 4.0 1.2e-07 31.3 0.2 3.6 2 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase PglD_N PF17836.1 AJD68555.1 - 2e-09 38.0 0.0 4.3e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 PglD N-terminal domain adh_short_C2 PF13561.6 AJD68556.1 - 7.8e-46 156.5 3.3 9.7e-46 156.2 3.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD68556.1 - 5.7e-41 140.1 1.5 6.7e-41 139.9 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD68556.1 - 7.7e-12 45.5 2.9 1e-11 45.1 2.9 1.2 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 AJD68556.1 - 0.0045 16.2 0.1 0.0066 15.6 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 AJD68556.1 - 0.0052 16.3 0.3 0.0078 15.7 0.3 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 AJD68556.1 - 0.012 15.8 0.4 0.017 15.4 0.4 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 AJD68556.1 - 0.022 14.6 0.3 0.031 14.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 AJD68556.1 - 0.057 13.0 0.3 0.12 11.9 0.3 1.7 2 0 0 2 2 2 0 NmrA-like family adh_short_C2 PF13561.6 AJD68557.1 - 1.2e-50 172.2 0.8 1.4e-50 172.0 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD68557.1 - 2.1e-41 141.5 0.2 2.6e-41 141.2 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD68557.1 - 2.1e-09 37.6 2.6 3e-09 37.0 2.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD68557.1 - 0.00032 20.2 0.8 0.012 15.1 0.3 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 AJD68557.1 - 0.00046 19.8 0.5 0.0013 18.3 0.5 1.7 2 1 0 2 2 2 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 AJD68557.1 - 0.027 14.8 0.9 0.047 14.0 0.5 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 AJD68557.1 - 0.039 13.9 0.3 0.067 13.1 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3618 PF12277.8 AJD68557.1 - 0.17 12.1 0.9 0.44 10.8 0.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) ACP_syn_III_C PF08541.10 AJD68558.1 - 3.5e-26 91.2 0.0 1.5e-25 89.2 0.0 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 AJD68558.1 - 1.8e-05 24.5 0.0 5.4e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Chal_sti_synt_C PF02797.15 AJD68558.1 - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain FAE1_CUT1_RppA PF08392.12 AJD68558.1 - 0.019 14.3 0.0 0.04 13.2 0.0 1.5 2 0 0 2 2 2 0 FAE1/Type III polyketide synthase-like protein PP-binding PF00550.25 AJD68559.1 - 0.00044 20.6 0.1 0.0005 20.4 0.1 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site DegT_DnrJ_EryC1 PF01041.17 AJD68560.1 - 1.3e-97 327.4 0.0 1.5e-97 327.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 AJD68560.1 - 2.6e-05 23.6 0.0 0.00012 21.3 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 AJD68560.1 - 0.0015 17.2 0.1 0.002 16.7 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 AJD68560.1 - 0.0025 17.2 0.0 0.0056 16.0 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase HisKA_4TM PF16926.5 AJD68560.1 - 0.027 14.0 0.6 0.58 9.7 0.3 2.4 2 1 0 2 2 2 0 Archaeal 4TM region of histidine kinase Sigma54_activat PF00158.26 AJD68561.1 - 1.6e-71 239.5 0.0 2.3e-71 238.9 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AJD68561.1 - 5.8e-24 84.8 0.0 1.5e-23 83.4 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain FleQ PF06490.11 AJD68561.1 - 2.3e-20 73.0 0.0 4.8e-20 72.0 0.0 1.6 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ HTH_8 PF02954.19 AJD68561.1 - 6.5e-13 48.2 1.5 1.3e-12 47.3 1.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AJD68561.1 - 5.7e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AJD68561.1 - 6.3e-05 23.4 0.5 0.00013 22.3 0.1 2.0 2 1 0 2 2 1 1 AAA ATPase domain HTH_50 PF18024.1 AJD68561.1 - 0.00028 20.4 0.1 0.00057 19.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain AAA PF00004.29 AJD68561.1 - 0.0003 21.2 0.0 0.00061 20.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 AJD68561.1 - 0.018 14.3 0.0 0.062 12.5 0.0 1.8 3 0 0 3 3 3 0 TIP49 P-loop domain AAA_7 PF12775.7 AJD68561.1 - 0.026 14.1 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region UPF0175 PF03683.13 AJD68561.1 - 0.038 13.7 0.0 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) AAA_30 PF13604.6 AJD68561.1 - 0.045 13.5 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 AJD68561.1 - 0.056 13.8 0.0 9.4 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 AJD68561.1 - 0.081 12.3 0.0 7.2 5.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MCM PF00493.23 AJD68561.1 - 0.087 11.9 0.0 0.25 10.4 0.0 1.6 1 1 0 1 1 1 0 MCM P-loop domain Response_reg PF00072.24 AJD68562.1 - 4e-22 78.5 0.0 4.4e-22 78.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain 3HCDH_RFF PF18321.1 AJD68562.1 - 0.049 14.1 0.0 0.14 12.6 0.0 1.8 1 1 1 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Sigma54_DBD PF04552.13 AJD68563.1 - 1.4e-57 193.8 0.1 2.1e-57 193.3 0.1 1.2 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 AJD68563.1 - 2.1e-32 112.4 0.0 6e-32 110.9 0.0 1.8 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 AJD68563.1 - 1.8e-12 46.9 9.4 3.9e-12 45.8 9.4 1.6 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) HTH_3 PF01381.22 AJD68563.1 - 0.0003 20.8 0.7 0.0014 18.7 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix HTH_IclR PF09339.10 AJD68563.1 - 0.00033 20.4 2.3 0.0019 18.0 0.1 3.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_23 PF13384.6 AJD68563.1 - 0.00044 20.0 0.1 0.082 12.7 0.0 3.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_38 PF13936.6 AJD68563.1 - 0.0012 18.6 0.4 0.0085 15.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD68563.1 - 0.011 15.2 1.1 0.039 13.5 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 AJD68563.1 - 0.012 15.5 2.8 0.3 11.0 0.0 4.1 4 0 0 4 4 4 0 MarR family HTH_24 PF13412.6 AJD68563.1 - 0.014 14.9 0.3 6.1 6.5 0.0 4.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 AJD68563.1 - 0.015 15.2 2.0 0.053 13.5 0.2 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AJD68563.1 - 0.053 13.9 0.0 0.053 13.9 0.0 3.6 4 1 0 4 4 3 0 Helix-turn-helix domain DUF746 PF05344.11 AJD68563.1 - 0.067 13.0 0.1 28 4.6 0.0 3.5 3 0 0 3 3 3 0 Domain of Unknown Function (DUF746) Phage_CII PF05269.11 AJD68563.1 - 0.13 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein Sigma70_r4_2 PF08281.12 AJD68563.1 - 0.13 11.9 1.2 0.78 9.5 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 DUF5429 PF17494.2 AJD68563.1 - 0.18 11.8 0.1 0.45 10.6 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5429) Response_reg PF00072.24 AJD68564.1 - 3.4e-26 91.6 0.1 5.4e-26 91.0 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD68564.1 - 1.9e-17 62.5 0.0 4.3e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD68564.1 - 7.7e-09 35.1 0.1 1.4e-08 34.3 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD68564.1 - 2.1e-05 23.9 0.3 4e-05 23.0 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 AJD68564.1 - 8.6e-05 22.0 0.1 0.00016 21.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AJD68564.1 - 0.00071 19.3 0.0 0.0019 17.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 AJD68564.1 - 0.0018 18.3 0.0 0.0044 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68564.1 - 0.0071 15.7 0.0 0.02 14.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r3 PF04539.16 AJD68564.1 - 0.0071 16.4 0.1 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_29 PF13551.6 AJD68564.1 - 0.0073 16.3 0.0 0.026 14.6 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 AJD68564.1 - 0.018 15.1 0.1 0.083 13.0 0.1 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AJD68564.1 - 0.068 13.0 0.1 0.45 10.4 0.1 2.2 1 1 0 1 1 1 0 HTH DNA binding domain Sigma70_ECF PF07638.11 AJD68564.1 - 0.092 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor Phage_terminase PF10668.9 AJD68564.1 - 0.1 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_38 PF13936.6 AJD68564.1 - 0.13 12.1 0.4 0.27 11.0 0.4 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 AJD68564.1 - 0.13 12.7 0.1 0.21 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PilZ_2 PF16823.5 AJD68565.1 - 5.3e-49 165.9 2.8 6.6e-49 165.6 2.0 1.5 2 0 0 2 2 2 1 Atypical PilZ domain, cyclic di-GMP receptor PilZ PF07238.14 AJD68565.1 - 0.035 14.4 0.0 0.053 13.8 0.0 1.3 1 0 0 1 1 1 0 PilZ domain RcbX PF02341.15 AJD68566.1 - 0.055 13.7 4.7 0.62 10.3 1.0 2.1 1 1 1 2 2 2 0 RbcX protein Halo_GVPC PF05465.13 AJD68566.1 - 0.083 13.2 2.3 0.4 11.0 2.3 2.2 1 1 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat FliT PF05400.13 AJD68566.1 - 0.34 11.7 13.9 2.1 9.2 13.9 1.9 1 1 0 1 1 1 0 Flagellar protein FliT Histone_HNS PF00816.21 AJD68566.1 - 0.59 11.0 4.1 17 6.3 4.1 2.0 1 1 0 1 1 1 0 H-NS histone family FliS PF02561.14 AJD68567.1 - 1.6e-34 118.6 0.0 2e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Flagellar protein FliS FliD_C PF07195.12 AJD68568.1 - 1.5e-48 165.3 8.7 1.5e-48 165.3 8.7 2.0 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus FliD_N PF02465.18 AJD68568.1 - 1.2e-16 61.2 6.5 1.2e-16 61.2 6.5 4.4 4 2 1 5 5 5 1 Flagellar hook-associated protein 2 N-terminus Flagellin_IN PF07196.13 AJD68568.1 - 5.2e-08 33.0 8.5 5.2e-08 33.0 8.5 3.3 2 1 0 2 2 2 1 Flagellin hook IN motif CLZ PF16526.5 AJD68568.1 - 0.007 16.7 1.0 0.078 13.3 0.2 2.4 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Prefoldin_2 PF01920.20 AJD68568.1 - 0.023 14.7 1.1 0.18 11.8 0.0 2.7 3 0 0 3 3 3 0 Prefoldin subunit Med2 PF11214.8 AJD68568.1 - 0.055 13.6 0.7 0.31 11.2 0.2 2.3 2 0 0 2 2 2 0 Mediator complex subunit 2 Fmp27_WPPW PF10359.9 AJD68568.1 - 0.11 11.4 0.0 0.21 10.4 0.0 1.5 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain BLOC1_2 PF10046.9 AJD68568.1 - 0.12 12.7 3.4 0.53 10.6 0.3 2.9 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SKA2 PF16740.5 AJD68568.1 - 0.17 11.7 2.1 0.81 9.5 0.2 2.4 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 2 CdvA PF18822.1 AJD68568.1 - 0.18 11.7 1.3 0.65 9.8 0.2 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DUF5082 PF16888.5 AJD68568.1 - 0.2 12.0 2.6 0.91 9.8 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) LXG PF04740.12 AJD68568.1 - 3.8 7.2 8.7 1.5 8.5 1.3 2.6 3 0 0 3 3 3 0 LXG domain of WXG superfamily FlxA PF14282.6 AJD68568.1 - 6.8 6.7 9.7 1.4 9.0 0.1 3.1 3 0 0 3 3 3 0 FlxA-like protein Flagellin_N PF00669.20 AJD68569.1 - 8.3e-46 155.5 18.1 8.3e-46 155.5 18.1 4.4 1 1 4 5 5 5 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 AJD68569.1 - 1.6e-28 98.8 5.7 1.6e-28 98.8 5.7 3.3 3 1 0 4 4 4 1 Bacterial flagellin C-terminal helical region Flagellin_IN PF07196.13 AJD68569.1 - 1.2e-06 28.6 7.8 1.2e-06 28.6 7.8 3.5 4 1 0 4 4 4 1 Flagellin hook IN motif Med10 PF09748.9 AJD68569.1 - 0.045 13.7 2.5 0.17 11.8 0.0 2.7 3 0 0 3 3 3 0 Transcription factor subunit Med10 of Mediator complex DUF2408 PF10303.9 AJD68569.1 - 0.098 13.2 0.3 1.8 9.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2408) Tropomyosin_1 PF12718.7 AJD68569.1 - 0.12 12.5 1.6 7 6.8 0.1 2.4 2 0 0 2 2 2 0 Tropomyosin like Vps5 PF09325.10 AJD68569.1 - 6.8 6.2 9.3 0.084 12.4 0.9 2.0 3 0 0 3 3 3 0 Vps5 C terminal like Flagellin_N PF00669.20 AJD68570.1 - 5.4e-22 78.4 9.8 5.4e-22 78.4 9.8 2.7 2 1 0 2 2 2 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 AJD68570.1 - 5.8e-06 26.6 18.8 2.8e-05 24.4 7.2 3.3 3 0 0 3 3 3 2 Bacterial flagellin C-terminal helical region Sec5 PF15469.6 AJD68570.1 - 0.021 14.6 0.6 0.044 13.6 0.6 1.5 1 0 0 1 1 1 0 Exocyst complex component Sec5 Arg_decarbox_C PF17944.1 AJD68570.1 - 0.48 11.0 2.2 44 4.7 0.0 3.1 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension Flg_bbr_C PF06429.13 AJD68571.1 - 6e-12 45.5 2.6 6e-12 45.5 2.6 3.2 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 AJD68571.1 - 1.1e-09 38.0 0.7 7.7e-09 35.3 0.7 2.6 1 0 0 1 1 1 1 Flagella basal body rod protein Macoilin PF09726.9 AJD68571.1 - 0.19 10.3 1.8 0.27 9.7 1.8 1.1 1 0 0 1 1 1 0 Macoilin family DUF948 PF06103.11 AJD68571.1 - 0.34 11.2 2.2 0.52 10.6 0.1 2.5 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) LPP PF04728.13 AJD68571.1 - 8.2 6.9 10.1 60 4.1 0.1 4.1 3 1 1 4 4 4 0 Lipoprotein leucine-zipper Glucosaminidase PF01832.20 AJD68572.1 - 1.4e-20 73.6 1.0 4.2e-20 72.0 0.2 2.0 2 0 0 2 2 2 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Rod-binding PF10135.9 AJD68572.1 - 4.4e-12 46.4 6.3 4.4e-12 46.4 6.3 1.9 2 0 0 2 2 2 1 Rod binding protein FlgI PF02119.16 AJD68573.1 - 2.3e-135 451.0 7.7 2.6e-135 450.8 7.7 1.0 1 0 0 1 1 1 1 Flagellar P-ring protein Flagellin_IN PF07196.13 AJD68573.1 - 0.084 13.1 0.5 0.99 9.6 0.0 3.0 3 0 0 3 3 3 0 Flagellin hook IN motif FlgH PF02107.16 AJD68574.1 - 7.5e-57 191.6 0.1 8.6e-57 191.4 0.1 1.0 1 0 0 1 1 1 1 Flagellar L-ring protein Flg_bbr_C PF06429.13 AJD68575.1 - 8.1e-25 86.8 1.5 2.5e-24 85.2 1.5 1.9 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 AJD68575.1 - 9e-14 51.0 0.5 9e-14 51.0 0.5 2.5 3 0 0 3 3 3 1 Flagella basal body rod protein Flg_bbr_C PF06429.13 AJD68576.1 - 6e-22 77.6 0.8 6e-22 77.6 0.8 1.9 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 AJD68576.1 - 5.4e-08 32.6 1.4 1.2e-07 31.5 0.2 2.3 2 0 0 2 2 2 1 Flagella basal body rod protein FlaE PF07559.14 AJD68577.1 - 6.8e-23 81.5 2.9 6.8e-23 81.5 2.9 2.7 3 1 0 3 3 3 1 Flagellar basal body protein FlaE Flg_bbr_C PF06429.13 AJD68577.1 - 1.4e-19 70.0 4.2 1.4e-19 70.0 4.2 2.6 3 0 0 3 3 3 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 AJD68577.1 - 6.6e-09 35.5 8.0 2e-08 34.0 8.0 2.0 1 0 0 1 1 1 1 Flagella basal body rod protein FlgD PF03963.14 AJD68578.1 - 5.1e-22 78.0 1.3 5.1e-22 78.0 1.3 1.6 2 0 0 2 2 2 1 Flagellar hook capping protein - N-terminal region FlgD_ig PF13860.6 AJD68578.1 - 3.1e-20 71.8 4.6 4.3e-20 71.4 3.8 1.6 1 1 1 2 2 2 1 FlgD Ig-like domain FLgD_tudor PF13861.6 AJD68578.1 - 1.6e-14 53.9 3.2 3e-14 53.0 3.2 1.5 1 0 0 1 1 1 1 FlgD Tudor-like domain DUF2271 PF10029.9 AJD68578.1 - 0.0083 15.8 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2271) Flg_bbr_C PF06429.13 AJD68579.1 - 4e-10 39.7 0.5 6.5e-10 39.0 0.5 1.7 1 1 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 AJD68579.1 - 8.2e-09 35.2 0.7 8.2e-09 35.2 0.7 2.3 2 0 0 2 2 2 1 Flagella basal body rod protein Flg_bb_rod PF00460.20 AJD68580.1 - 4.7e-08 32.8 0.0 8.5e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Flagella basal body rod protein CheW PF01584.19 AJD68581.1 - 2.5e-32 111.4 0.3 2.5e-32 111.4 0.3 1.6 2 0 0 2 2 2 1 CheW-like domain Response_reg PF00072.24 AJD68581.1 - 4.3e-17 62.3 0.0 6.5e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Secretin_N PF03958.17 AJD68581.1 - 0.15 12.5 0.8 0.43 11.0 0.8 1.8 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain ChapFlgA PF13144.6 AJD68582.1 - 3.1e-29 101.5 3.9 4.1e-29 101.1 3.9 1.2 1 0 0 1 1 1 1 Chaperone for flagella basal body P-ring formation SAF PF08666.12 AJD68582.1 - 7.5e-09 36.1 1.2 1.4e-08 35.3 1.2 1.5 1 0 0 1 1 1 1 SAF domain ChapFlgA_N PF17656.1 AJD68582.1 - 2.7e-08 33.9 0.1 6.3e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 FlgA N-terminal domain FlgM PF04316.13 AJD68583.1 - 8.7e-14 51.6 0.4 8.7e-14 51.6 0.4 1.6 2 0 0 2 2 2 1 Anti-sigma-28 factor, FlgM DUF1471 PF07338.13 AJD68583.1 - 0.032 14.2 0.1 0.7 9.9 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1471) FlgN PF05130.12 AJD68584.1 - 5.8e-08 33.4 2.2 0.00053 20.5 0.9 2.0 2 0 0 2 2 2 2 FlgN protein Spectrin PF00435.21 AJD68584.1 - 0.031 14.8 0.2 0.039 14.4 0.2 1.2 1 0 0 1 1 1 0 Spectrin repeat HATPase_c PF02518.26 AJD68585.1 - 3.9e-19 69.2 0.0 6.7e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD68585.1 - 1.3e-08 34.7 0.2 6.5e-08 32.5 0.2 2.1 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Med30 PF11315.8 AJD68585.1 - 0.068 13.4 0.1 0.72 10.0 0.0 2.1 2 0 0 2 2 2 0 Mediator complex subunit 30 HPTransfase PF10090.9 AJD68585.1 - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain OEP PF02321.18 AJD68585.1 - 0.21 11.4 2.9 0.5 10.2 2.9 1.6 1 0 0 1 1 1 0 Outer membrane efflux protein EAL PF00563.20 AJD68586.1 - 1e-70 238.0 0.0 1.9e-70 237.1 0.0 1.5 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AJD68586.1 - 1.9e-19 70.0 0.0 5.3e-19 68.5 0.0 1.7 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 AJD68586.1 - 6.4e-19 68.2 0.0 1.1e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 AJD68587.1 - 3.1e-21 75.5 0.0 8.4e-07 29.0 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 AJD68587.1 - 3.9e-18 65.6 0.0 2.2e-06 27.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 AJD68587.1 - 1.2e-17 64.1 6.9 1.5e-08 34.8 0.1 3.7 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 AJD68587.1 - 6.8e-14 51.5 0.2 4.3e-07 29.8 0.0 3.2 3 0 0 3 3 3 2 PAS domain HisKA_3 PF07730.13 AJD68587.1 - 1.7e-12 47.7 3.6 1.7e-12 47.7 3.6 3.5 3 0 0 3 3 3 1 Histidine kinase HATPase_c PF02518.26 AJD68587.1 - 7.8e-10 39.3 0.0 1.2e-08 35.4 0.0 2.5 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD68587.1 - 5.5e-05 23.1 0.0 0.00018 21.4 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 AJD68587.1 - 0.00053 20.2 0.0 2.6 8.4 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_12 PF18095.1 AJD68587.1 - 0.18 11.4 0.0 0.86 9.2 0.0 1.9 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain PEP-utilisers_N PF05524.13 AJD68587.1 - 5.1 7.3 6.6 7.2 6.8 1.2 3.2 2 2 0 2 2 2 0 PEP-utilising enzyme, N-terminal EAL PF00563.20 AJD68588.1 - 5e-66 222.6 0.0 1.6e-65 221.0 0.0 1.9 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AJD68588.1 - 1.2e-45 155.2 0.1 1.2e-45 155.2 0.1 2.5 3 0 0 3 3 3 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 AJD68588.1 - 2.1e-29 101.6 0.5 1.3e-22 79.8 0.1 4.0 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.10 AJD68588.1 - 4.4e-11 43.0 8.9 0.00013 22.1 0.1 5.2 6 0 0 6 6 6 3 PAS fold PAS PF00989.25 AJD68588.1 - 4.1e-10 39.6 0.7 0.0001 22.3 0.0 4.1 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 AJD68588.1 - 4.2e-08 33.4 0.0 0.12 12.7 0.0 4.1 4 0 0 4 4 4 3 PAS domain MCPsignal PF00015.21 AJD68590.1 - 3.4e-30 105.1 15.6 6.6e-30 104.2 11.9 2.5 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 AJD68590.1 - 0.0052 17.0 5.1 0.34 11.2 0.2 4.0 3 1 0 3 3 3 1 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 AJD68590.1 - 0.025 14.9 5.4 3.7 7.9 0.2 4.5 2 1 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 AJD68590.1 - 0.025 14.6 7.7 6.4 6.8 0.3 3.5 2 1 0 3 3 3 0 Protein of unknown function (DUF1664) DUF883 PF05957.13 AJD68590.1 - 0.032 14.8 0.6 0.032 14.8 0.6 4.2 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF883) GIT1_C PF12205.8 AJD68590.1 - 0.045 13.9 2.8 0.71 10.0 0.1 3.2 2 2 1 3 3 3 0 G protein-coupled receptor kinase-interacting protein 1 C term ApoLp-III PF07464.11 AJD68590.1 - 0.057 13.5 4.0 0.77 9.8 0.4 2.9 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Mur_ligase_C PF02875.21 AJD68590.1 - 0.066 13.5 0.5 2.2 8.6 0.4 2.6 1 1 0 1 1 1 0 Mur ligase family, glutamate ligase domain SOG2 PF10428.9 AJD68590.1 - 0.071 12.3 0.1 0.071 12.3 0.1 2.0 1 1 1 2 2 2 0 RAM signalling pathway protein Vps53_N PF04100.12 AJD68590.1 - 0.099 11.6 7.6 0.091 11.7 1.9 2.3 1 1 1 2 2 2 0 Vps53-like, N-terminal RmuC PF02646.16 AJD68590.1 - 0.11 11.6 7.3 0.36 9.9 0.8 3.3 1 1 2 3 3 3 0 RmuC family VBS PF08913.10 AJD68590.1 - 0.19 12.2 6.2 0.14 12.6 1.4 2.4 2 0 0 2 2 2 0 Vinculin Binding Site AAA_13 PF13166.6 AJD68590.1 - 0.21 10.2 3.9 0.29 9.7 3.9 1.4 1 0 0 1 1 1 0 AAA domain FH2 PF02181.23 AJD68590.1 - 0.37 9.9 2.0 4.8 6.2 0.9 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain phiKZ_IP PF12699.7 AJD68590.1 - 0.4 9.8 5.5 1.1 8.3 1.4 3.0 1 1 2 3 3 3 0 phiKZ-like phage internal head proteins SKA2 PF16740.5 AJD68590.1 - 0.43 10.4 4.4 0.72 9.7 0.3 3.1 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 Vps54_N PF10475.9 AJD68590.1 - 0.46 9.7 1.9 0.74 9.0 1.0 1.7 1 1 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex DUF4061 PF13270.6 AJD68590.1 - 0.64 10.4 5.1 18 5.7 0.6 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4061) DUF4795 PF16043.5 AJD68590.1 - 0.79 9.3 5.2 8.7 5.9 3.3 2.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) TMPIT PF07851.13 AJD68590.1 - 2.1 7.5 6.1 9.7 5.3 0.3 2.9 2 1 1 3 3 3 0 TMPIT-like protein FAM184 PF15665.5 AJD68590.1 - 2.8 7.7 9.1 4.3 7.1 5.0 2.4 1 1 0 2 2 2 0 Family with sequence similarity 184, A and B Muted PF14942.6 AJD68590.1 - 4.2 7.7 7.6 1.1 9.6 1.0 2.7 3 0 0 3 3 3 0 Organelle biogenesis, Muted-like protein T7SS_ESX_EspC PF10824.8 AJD68590.1 - 4.5 7.8 12.9 0.18 12.3 1.6 3.3 1 1 1 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm NPV_P10 PF05531.12 AJD68590.1 - 5.8 7.4 6.9 12 6.4 0.4 3.8 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein T2SSF PF00482.23 AJD68590.1 - 7.9 6.5 13.5 10 6.1 0.9 3.4 1 1 2 3 3 3 0 Type II secretion system (T2SS), protein F Atg14 PF10186.9 AJD68590.1 - 8.4 5.4 8.0 2.8 7.0 3.4 1.9 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF489 PF04356.12 AJD68591.1 - 2e-59 200.8 0.4 2.3e-59 200.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF489) tRNA_Me_trans PF03054.16 AJD68592.1 - 3.3e-127 424.2 0.0 3.7e-127 424.0 0.0 1.0 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 AJD68592.1 - 5.6e-05 22.4 0.0 0.0026 16.9 0.0 2.2 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 AJD68592.1 - 0.014 15.1 0.1 0.095 12.4 0.1 2.0 1 1 0 1 1 1 0 PP-loop family ThiI PF02568.14 AJD68592.1 - 0.037 13.6 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF1654 PF07867.11 AJD68592.1 - 0.061 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) Asn_synthase PF00733.21 AJD68592.1 - 0.068 12.8 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 Asparagine synthase QueC PF06508.13 AJD68592.1 - 0.2 11.1 0.0 0.84 9.1 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC NUDIX PF00293.28 AJD68593.1 - 1.1e-14 54.6 0.3 1.3e-14 54.4 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain Pterin_4a PF01329.19 AJD68593.1 - 0.19 11.9 0.2 0.58 10.4 0.0 1.9 2 1 0 2 2 2 0 Pterin 4 alpha carbinolamine dehydratase ClpS PF02617.17 AJD68594.1 - 4.6e-34 116.0 0.0 5.3e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 ATP-dependent Clp protease adaptor protein ClpS AAA_2 PF07724.14 AJD68595.1 - 4.3e-50 170.2 0.5 6.5e-46 156.6 0.0 3.4 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 AJD68595.1 - 1.6e-27 95.5 0.3 3.2e-27 94.5 0.3 1.5 1 0 0 1 1 1 1 AAA lid domain ClpB_D2-small PF10431.9 AJD68595.1 - 9.6e-23 80.1 0.8 3.9e-22 78.1 0.0 2.5 3 0 0 3 3 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 AJD68595.1 - 1.7e-22 80.2 0.8 1.6e-10 41.5 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD68595.1 - 1.2e-16 60.9 0.2 2.2e-11 43.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) Clp_N PF02861.20 AJD68595.1 - 5.4e-13 48.9 0.2 1.7e-12 47.3 0.2 2.0 1 0 0 1 1 1 1 Clp amino terminal domain, pathogenicity island component Sigma54_activat PF00158.26 AJD68595.1 - 4.6e-09 36.2 0.0 0.00014 21.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.6 AJD68595.1 - 5.7e-09 36.6 2.0 7.2e-05 23.2 0.0 4.2 4 2 2 6 6 6 2 AAA ATPase domain AAA_22 PF13401.6 AJD68595.1 - 1.3e-07 32.0 0.5 0.0049 17.1 0.1 4.2 2 2 0 2 2 2 2 AAA domain AAA_7 PF12775.7 AJD68595.1 - 2.6e-07 30.3 0.0 0.024 14.2 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region TniB PF05621.11 AJD68595.1 - 3.7e-07 29.7 0.0 0.00038 19.9 0.0 3.5 2 1 0 2 2 2 1 Bacterial TniB protein Mg_chelatase PF01078.21 AJD68595.1 - 2.3e-06 27.1 0.2 2 7.7 0.0 4.4 3 2 1 4 4 4 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 AJD68595.1 - 2.4e-05 24.1 1.0 0.87 9.3 0.0 4.2 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_6 PF12774.7 AJD68595.1 - 3.5e-05 22.9 0.0 9.8e-05 21.5 0.0 1.7 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_18 PF13238.6 AJD68595.1 - 7.5e-05 23.3 0.0 0.19 12.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 AJD68595.1 - 0.0001 22.1 0.0 0.28 10.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 AJD68595.1 - 0.00018 21.6 0.0 0.88 9.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 AJD68595.1 - 0.00039 20.8 0.0 1.4 9.3 0.0 3.3 3 0 0 3 3 3 1 RNA helicase TsaE PF02367.17 AJD68595.1 - 0.0008 19.4 0.0 0.4 10.7 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 AJD68595.1 - 0.0009 19.4 0.0 0.11 12.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 AJD68595.1 - 0.00093 19.1 0.1 0.017 15.0 0.1 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 AJD68595.1 - 0.004 17.2 0.0 1.5 8.8 0.0 3.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit NACHT PF05729.12 AJD68595.1 - 0.0053 16.7 0.0 0.47 10.4 0.0 3.3 3 0 0 3 3 3 1 NACHT domain TIP49 PF06068.13 AJD68595.1 - 0.0091 15.2 0.1 0.35 10.0 0.0 2.8 2 1 1 3 3 3 1 TIP49 P-loop domain Torsin PF06309.11 AJD68595.1 - 0.02 15.0 0.0 0.098 12.8 0.0 2.1 2 0 0 2 2 2 0 Torsin SRP54 PF00448.22 AJD68595.1 - 0.037 13.7 0.6 12 5.5 0.1 3.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 AJD68595.1 - 0.051 13.5 0.1 18 5.2 0.0 3.1 3 0 0 3 3 3 0 RsgA GTPase ATPase_2 PF01637.18 AJD68595.1 - 0.056 13.4 0.5 5.8 6.8 0.0 3.4 3 1 1 4 4 3 0 ATPase domain predominantly from Archaea AAA_8 PF12780.7 AJD68595.1 - 0.064 12.6 0.2 11 5.3 0.0 3.7 4 1 0 4 4 4 0 P-loop containing dynein motor region D4 AAA_28 PF13521.6 AJD68595.1 - 0.08 13.2 0.0 2.5 8.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 AJD68595.1 - 0.12 11.7 0.0 3.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin ParA PF10609.9 AJD68595.1 - 0.15 11.5 0.4 11 5.4 0.0 2.6 3 0 0 3 3 3 0 NUBPL iron-transfer P-loop NTPase Rad17 PF03215.15 AJD68595.1 - 0.21 11.5 0.0 2.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain eIF-1a PF01176.19 AJD68596.1 - 1.9e-28 98.0 0.1 2.1e-28 97.9 0.1 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 AJD68596.1 - 0.0037 17.0 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 RsgA N-terminal domain S1 PF00575.23 AJD68596.1 - 0.0051 17.1 0.0 0.0063 16.8 0.0 1.1 1 0 0 1 1 1 1 S1 RNA binding domain OB_aCoA_assoc PF01796.17 AJD68596.1 - 0.098 12.7 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated Leu_Phe_trans PF03588.14 AJD68597.1 - 4.5e-70 234.6 0.0 5.3e-70 234.3 0.0 1.1 1 0 0 1 1 1 1 Leucyl/phenylalanyl-tRNA protein transferase FemAB_like PF04339.12 AJD68598.1 - 9.9e-135 449.4 0.1 1.1e-134 449.2 0.1 1.0 1 0 0 1 1 1 1 Peptidogalycan biosysnthesis/recognition Acetyltransf_6 PF13480.7 AJD68598.1 - 1.6e-16 60.7 1.7 3.7e-16 59.6 0.2 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF2156 PF09924.9 AJD68598.1 - 0.025 13.6 0.0 0.047 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) Pyr_redox_2 PF07992.14 AJD68599.1 - 7e-47 160.1 1.0 8.1e-47 159.9 1.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD68599.1 - 5.9e-20 71.7 0.3 1.3e-16 60.8 0.0 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD68599.1 - 2.8e-17 63.0 2.9 2.2e-16 60.2 1.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AJD68599.1 - 8.1e-06 25.4 1.1 0.011 15.1 0.0 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.17 AJD68599.1 - 0.00018 20.8 0.5 0.14 11.4 0.0 2.5 2 1 0 2 2 2 2 Thi4 family FAD_binding_2 PF00890.24 AJD68599.1 - 0.00022 20.4 12.8 0.0077 15.4 0.2 3.7 2 1 1 4 4 4 2 FAD binding domain GIDA PF01134.22 AJD68599.1 - 0.00038 19.7 5.1 0.37 9.8 0.0 3.7 4 0 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 AJD68599.1 - 0.0022 16.8 0.5 0.9 8.2 0.1 3.2 3 0 0 3 3 3 1 HI0933-like protein FMO-like PF00743.19 AJD68599.1 - 0.0041 15.6 0.0 0.0081 14.6 0.0 1.4 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Shikimate_DH PF01488.20 AJD68599.1 - 0.0083 16.2 0.0 0.31 11.1 0.0 2.6 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 AJD68599.1 - 0.01 16.1 0.0 0.037 14.3 0.0 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 AJD68599.1 - 0.01 14.7 0.4 0.17 10.7 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.6 AJD68599.1 - 0.028 14.9 0.0 0.4 11.1 0.1 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 AJD68599.1 - 0.11 11.8 1.2 2.9 7.2 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 AJD68599.1 - 0.11 12.0 3.7 17 4.9 0.1 3.4 3 1 1 4 4 4 0 FAD dependent oxidoreductase FtsK_SpoIIIE PF01580.18 AJD68600.1 - 1.5e-64 217.7 0.3 4e-64 216.3 0.3 1.7 1 1 0 1 1 1 1 FtsK/SpoIIIE family FtsK_4TM PF13491.6 AJD68600.1 - 5.9e-40 136.7 16.2 8.7e-40 136.2 16.2 1.2 1 0 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE FtsK_alpha PF17854.1 AJD68600.1 - 3.1e-31 107.5 0.1 5.7e-31 106.7 0.1 1.5 1 0 0 1 1 1 1 FtsK alpha domain FtsK_gamma PF09397.10 AJD68600.1 - 1.1e-27 95.5 0.0 2.8e-27 94.3 0.0 1.7 1 0 0 1 1 1 1 Ftsk gamma domain AAA_10 PF12846.7 AJD68600.1 - 1.9e-06 27.0 0.0 0.00094 18.2 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 AJD68600.1 - 0.00015 22.0 0.0 0.00034 20.8 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain T2SSE PF00437.20 AJD68600.1 - 0.0044 16.1 0.0 0.0092 15.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 AJD68600.1 - 0.011 14.7 0.1 0.1 11.5 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 AJD68600.1 - 0.028 13.8 0.1 1.1 8.7 0.0 2.8 3 0 0 3 3 3 0 Bacterial TniB protein AAA_22 PF13401.6 AJD68600.1 - 0.058 13.7 0.1 0.83 9.9 0.1 2.5 1 1 0 1 1 1 0 AAA domain Cupin_4 PF08007.12 AJD68600.1 - 0.059 12.8 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Cupin superfamily protein AAA_29 PF13555.6 AJD68600.1 - 0.062 13.1 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DEAD PF00270.29 AJD68600.1 - 0.098 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA PF00004.29 AJD68600.1 - 0.15 12.5 0.1 7.8 6.9 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3857 PF12969.7 AJD68601.1 - 2.5e-33 115.5 4.4 3.5e-32 111.8 0.4 2.7 3 0 0 3 3 3 1 Domain of Unknown Function with PDB structure (DUF3857) Transglut_core PF01841.19 AJD68601.1 - 6.6e-09 36.2 0.3 3.5e-08 33.9 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3858 PF12970.7 AJD68601.1 - 0.00019 21.5 0.0 0.00051 20.1 0.0 1.7 2 0 0 2 2 2 1 Domain of Unknown Function with PDB structure (DUF3858) OMP_b-brl PF13505.6 AJD68601.1 - 0.0087 16.2 0.3 0.045 13.9 0.2 2.2 2 0 0 2 2 2 1 Outer membrane protein beta-barrel domain Pur_ac_phosph_N PF16656.5 AJD68601.1 - 0.071 13.7 2.4 0.61 10.7 2.4 2.5 1 1 0 1 1 1 0 Purple acid Phosphatase, N-terminal domain DUF3868 PF12984.7 AJD68601.1 - 0.14 12.0 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3868) LolA PF03548.15 AJD68602.1 - 2e-51 174.0 0.0 2.4e-51 173.7 0.0 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF2092 PF09865.9 AJD68602.1 - 1.3e-05 24.6 0.0 0.14 11.5 0.0 2.2 2 0 0 2 2 2 2 Predicted periplasmic protein (DUF2092) CENP-F_leu_zip PF10473.9 AJD68603.1 - 0.015 15.3 9.4 1 9.4 0.1 2.9 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PI3K_P85_iSH2 PF16454.5 AJD68603.1 - 0.032 13.8 4.0 0.083 12.5 4.0 1.6 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Fez1 PF06818.15 AJD68603.1 - 0.17 12.4 14.8 0.53 10.7 0.5 2.6 2 0 0 2 2 2 0 Fez1 DUF1664 PF07889.12 AJD68603.1 - 0.41 10.7 5.0 1.1 9.4 0.6 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) ATG16 PF08614.11 AJD68603.1 - 3.9 7.6 32.8 4.1 7.6 17.7 2.9 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) MgsA_C PF12002.8 AJD68604.1 - 3.7e-62 209.2 0.1 1e-61 207.7 0.0 1.7 2 0 0 2 2 2 1 MgsA AAA+ ATPase C terminal AAA_assoc_2 PF16193.5 AJD68604.1 - 3.3e-22 78.6 0.1 1e-21 77.0 0.1 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA PF00004.29 AJD68604.1 - 9.5e-15 55.2 0.0 2.2e-14 54.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 AJD68604.1 - 5.4e-13 49.0 0.0 9e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AJD68604.1 - 1.9e-08 34.9 5.2 0.00012 22.5 0.0 3.5 1 1 2 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 AJD68604.1 - 3.6e-08 33.5 0.1 0.0046 17.0 0.0 3.5 3 1 1 4 4 4 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AJD68604.1 - 3.4e-06 27.4 0.1 0.0053 17.0 0.0 3.1 1 1 2 3 3 3 2 AAA domain Mg_chelatase PF01078.21 AJD68604.1 - 8.2e-06 25.3 0.0 0.004 16.6 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ResIII PF04851.15 AJD68604.1 - 0.0002 21.4 0.0 0.15 12.0 0.0 2.2 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 AJD68604.1 - 0.00023 20.9 0.0 0.022 14.5 0.0 2.4 1 1 1 2 2 2 1 Sigma-54 interaction domain AAA_14 PF13173.6 AJD68604.1 - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AJD68604.1 - 0.0013 18.5 0.0 0.039 13.7 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AJD68604.1 - 0.0031 17.1 0.0 0.0081 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 AJD68604.1 - 0.0052 17.1 0.0 0.76 10.1 0.0 2.4 1 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 AJD68604.1 - 0.0052 16.0 0.0 0.0088 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF2075 PF09848.9 AJD68604.1 - 0.008 15.5 0.0 1.9 7.6 0.0 2.4 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.11 AJD68604.1 - 0.012 15.4 0.0 0.043 13.7 0.0 1.9 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 AJD68604.1 - 0.014 15.5 0.0 0.031 14.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.6 AJD68604.1 - 0.018 15.3 0.0 0.13 12.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 AJD68604.1 - 0.033 13.9 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DNA_pol3_delta2 PF13177.6 AJD68604.1 - 0.039 13.7 0.0 4.4 7.1 0.0 2.3 1 1 1 2 2 2 0 DNA polymerase III, delta subunit AAA_11 PF13086.6 AJD68604.1 - 0.048 13.5 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 AJD68604.1 - 0.064 12.4 0.0 0.21 10.8 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_18 PF13238.6 AJD68604.1 - 0.067 13.7 0.0 0.15 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AJD68604.1 - 0.07 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AJD68604.1 - 0.077 13.1 0.0 0.59 10.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 AJD68604.1 - 0.079 12.9 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TniB PF05621.11 AJD68604.1 - 0.081 12.3 0.0 1 8.7 0.0 2.3 1 1 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 AJD68604.1 - 0.092 13.3 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 AJD68604.1 - 0.1 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 AJD68604.1 - 0.11 12.4 0.0 1 9.2 0.0 2.3 2 1 1 3 3 2 0 ATPase domain predominantly from Archaea Cpn60_TCP1 PF00118.24 AJD68604.1 - 0.18 10.4 0.1 0.27 9.8 0.1 1.2 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family CRCB PF02537.15 AJD68605.1 - 1.2e-19 70.4 11.6 1.4e-19 70.2 11.6 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) MFS_1 PF07690.16 AJD68605.1 - 0.0037 16.2 14.1 0.0044 16.0 13.7 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Thiolase_N PF00108.23 AJD68607.1 - 3.3e-74 249.5 2.2 4e-74 249.2 1.1 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AJD68607.1 - 2e-45 153.4 0.4 2e-45 153.4 0.4 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AJD68607.1 - 1.5e-07 31.3 3.7 1.2e-06 28.3 0.6 2.8 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 AJD68607.1 - 0.00083 19.2 0.7 0.13 12.1 0.1 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 3HCDH_N PF02737.18 AJD68608.1 - 6e-42 143.6 0.0 3.5e-41 141.1 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 AJD68608.1 - 8.4e-16 58.0 0.5 1.6e-15 57.1 0.5 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 AJD68608.1 - 2.1e-14 53.9 0.0 6e-10 39.6 0.0 2.8 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 AJD68608.1 - 3.5e-09 36.6 0.2 7.6e-09 35.5 0.2 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 AJD68608.1 - 0.0054 16.9 1.3 0.017 15.3 0.0 2.5 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_8 PF13450.6 AJD68608.1 - 0.019 15.2 0.2 0.24 11.7 0.1 2.8 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.20 AJD68608.1 - 0.048 13.7 0.1 0.19 11.8 0.1 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 AJD68608.1 - 0.053 13.2 0.1 0.13 11.9 0.1 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 AJD68608.1 - 0.12 12.9 0.2 4.7 7.8 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NfrA_C PF13283.6 AJD68608.1 - 0.12 11.8 0.3 0.25 10.8 0.3 1.4 1 0 0 1 1 1 0 Bacteriophage N adsorption protein A C-term TetR_C_30 PF17939.1 AJD68609.1 - 5.7e-31 107.1 0.4 1.1e-30 106.2 0.4 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 AJD68609.1 - 1.4e-14 53.6 2.9 1.8e-14 53.3 0.1 2.7 4 0 0 4 4 4 1 Bacterial regulatory proteins, tetR family NDK PF00334.19 AJD68610.1 - 1.3e-53 180.6 0.0 1.5e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Radical_SAM PF04055.21 AJD68611.1 - 1.3e-17 64.7 0.0 2.2e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AJD68611.1 - 0.001 19.2 0.0 0.0023 18.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pkinase_fungal PF17667.1 AJD68611.1 - 0.022 13.5 0.0 0.037 12.8 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase Fer4_12 PF13353.6 AJD68611.1 - 0.091 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain TPR_2 PF07719.17 AJD68612.1 - 1.7e-13 49.5 14.9 0.00016 21.5 0.1 5.7 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.6 AJD68612.1 - 3.7e-11 43.4 17.9 0.00031 21.2 4.2 3.5 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 AJD68612.1 - 2.1e-10 40.8 3.3 2.2e-06 27.9 0.1 4.4 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD68612.1 - 3.8e-10 39.7 24.0 0.0036 18.0 0.3 6.0 2 1 4 6 6 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 AJD68612.1 - 5.4e-10 39.8 35.0 2.9e-07 31.0 9.1 4.1 1 1 3 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 AJD68612.1 - 8.2e-10 38.1 1.5 0.00026 20.7 0.1 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 AJD68612.1 - 4.9e-09 35.7 0.2 0.13 12.5 0.0 4.2 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 AJD68612.1 - 2.9e-08 33.5 8.7 0.025 14.9 0.2 4.4 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 AJD68612.1 - 7.7e-07 28.7 8.5 0.0095 15.6 0.1 4.4 2 1 2 4 4 4 2 TPR repeat TPR_15 PF13429.6 AJD68612.1 - 7.5e-06 25.4 9.0 0.0066 15.7 1.5 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD68612.1 - 4.9e-05 23.5 0.1 0.013 15.7 0.0 2.4 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 AJD68612.1 - 0.00033 20.8 17.2 0.062 13.5 0.3 4.2 2 1 2 4 4 4 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 AJD68612.1 - 0.00055 20.0 0.6 0.49 10.5 0.0 2.9 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.14 AJD68612.1 - 0.00094 18.7 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 2 Coatomer epsilon subunit DUF4919 PF16266.5 AJD68612.1 - 0.0025 17.8 0.0 0.037 14.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4919) TPR_21 PF09976.9 AJD68612.1 - 0.0075 16.0 3.7 0.0075 16.0 3.7 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain TPR_7 PF13176.6 AJD68612.1 - 0.017 15.1 9.5 2.9 8.1 0.0 5.0 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.6 AJD68612.1 - 0.036 14.0 0.0 0.036 14.0 0.0 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 AJD68612.1 - 0.053 13.4 3.7 3.2 7.6 0.2 2.5 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal TPR_6 PF13174.6 AJD68612.1 - 0.057 14.1 12.9 14 6.6 0.0 4.9 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD68612.1 - 1.4 9.7 17.7 3.8 8.4 0.2 5.4 5 1 1 6 6 5 0 Tetratricopeptide repeat HTH_25 PF13413.6 AJD68613.1 - 8.3e-22 76.8 0.1 1.3e-21 76.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4115 PF13464.6 AJD68613.1 - 4.8e-17 61.9 0.3 8.7e-17 61.1 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4115) HTH_31 PF13560.6 AJD68613.1 - 2e-08 34.5 3.1 4.5e-08 33.3 3.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 AJD68613.1 - 0.00014 21.8 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PCP_red PF08369.10 AJD68613.1 - 0.065 13.5 0.2 12 6.2 0.0 2.8 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit DUF2316 PF10078.9 AJD68613.1 - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) TPR_21 PF09976.9 AJD68614.1 - 1.5e-37 129.2 5.7 1.8e-37 129.0 5.7 1.0 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_14 PF13428.6 AJD68614.1 - 1.8e-09 37.6 9.2 0.0053 17.5 0.2 3.9 3 1 1 4 4 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 AJD68614.1 - 2.6e-08 34.3 12.1 0.001 19.5 0.6 3.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 AJD68614.1 - 4.8e-08 32.5 0.9 0.033 14.3 0.0 4.2 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 AJD68614.1 - 5.8e-07 30.0 8.1 2.8e-05 24.7 1.7 3.3 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 AJD68614.1 - 1.9e-06 28.0 1.5 0.47 10.8 0.0 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD68614.1 - 1.6e-05 25.1 0.4 0.0041 17.3 0.1 2.3 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 AJD68614.1 - 1.7e-05 24.5 0.1 1.9 8.7 0.0 3.6 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 AJD68614.1 - 3.1e-05 24.3 2.9 0.57 10.9 0.1 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_10 PF13374.6 AJD68614.1 - 4.7e-05 23.1 1.0 0.56 10.2 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD68614.1 - 8.3e-05 22.5 0.6 8.4 6.9 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_1 PF00515.28 AJD68614.1 - 0.00012 21.8 2.6 0.79 9.7 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.14 AJD68614.1 - 0.00016 21.9 6.6 0.058 14.0 0.1 4.5 3 1 0 4 4 3 1 Tetratricopeptide repeat TPR_5 PF12688.7 AJD68614.1 - 0.00018 21.7 4.8 0.0034 17.6 1.9 2.2 1 1 1 2 2 2 1 Tetratrico peptide repeat YfdX PF10938.8 AJD68614.1 - 0.00072 19.5 10.3 0.6 10.0 0.1 3.6 2 1 1 3 3 3 2 YfdX protein Clathrin PF00637.20 AJD68614.1 - 0.0018 18.2 0.2 0.0043 16.9 0.0 1.6 2 0 0 2 2 2 1 Region in Clathrin and VPS TPR_11 PF13414.6 AJD68614.1 - 0.0073 16.0 0.2 10 5.9 0.0 3.4 3 0 0 3 3 3 0 TPR repeat PPR PF01535.20 AJD68614.1 - 0.025 14.8 0.0 23 5.5 0.0 3.3 3 0 0 3 3 3 0 PPR repeat Imm17 PF15562.6 AJD68614.1 - 0.067 13.1 0.5 0.11 12.4 0.5 1.3 1 0 0 1 1 1 0 Immunity protein 17 Ribosomal_S21e PF01249.18 AJD68614.1 - 0.1 12.7 1.2 14 5.9 0.0 2.8 1 1 3 4 4 4 0 Ribosomal protein S21e DUF4079 PF13301.6 AJD68614.1 - 0.15 12.2 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) Wzy_C_2 PF11846.8 AJD68614.1 - 0.25 11.3 2.7 28 4.5 0.1 3.1 2 1 1 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal TPR_20 PF14561.6 AJD68614.1 - 3 8.2 6.9 3.9 7.9 0.3 3.0 2 1 1 3 3 2 0 Tetratricopeptide repeat PQQ_2 PF13360.6 AJD68615.1 - 2.6e-53 181.1 13.8 9.6e-44 149.7 5.1 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 AJD68615.1 - 1.7e-27 95.1 24.9 1.7e-08 34.7 0.0 8.4 8 1 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 AJD68615.1 - 1.7e-26 90.8 5.2 6.3e-06 25.9 0.0 6.7 7 0 0 7 7 7 6 PQQ enzyme repeat MMR_HSR1 PF01926.23 AJD68616.1 - 1.2e-53 180.0 0.0 7.9e-27 93.6 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 AJD68616.1 - 8.5e-31 106.6 0.0 1.4e-14 54.0 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B KH_dom-like PF14714.6 AJD68616.1 - 6.5e-24 84.1 0.2 1.2e-23 83.2 0.2 1.4 1 0 0 1 1 1 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GTP_EFTU PF00009.27 AJD68616.1 - 2.3e-22 79.5 0.0 2.8e-11 43.3 0.0 5.0 3 2 0 3 3 3 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 AJD68616.1 - 2.1e-11 44.0 0.0 1.6e-05 24.8 0.0 4.3 3 1 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 AJD68616.1 - 2.9e-11 43.7 0.0 7.9e-05 22.8 0.0 4.0 2 2 2 4 4 4 2 Dynamin family AIG1 PF04548.16 AJD68616.1 - 1.4e-09 37.6 0.0 1.1e-05 24.9 0.0 2.6 2 1 1 3 3 3 2 AIG1 family PduV-EutP PF10662.9 AJD68616.1 - 2.3e-07 30.6 0.0 0.0028 17.4 0.0 3.8 4 0 0 4 4 4 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 AJD68616.1 - 2.6e-07 30.4 0.0 0.031 13.9 0.0 2.7 2 1 0 2 2 2 2 Ras family MeaB PF03308.16 AJD68616.1 - 9.6e-07 28.0 0.9 0.5 9.3 0.1 4.2 3 1 0 4 4 4 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 AJD68616.1 - 3e-06 27.5 0.0 0.067 13.4 0.0 3.2 2 2 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 AJD68616.1 - 3.7e-06 27.5 0.0 0.036 14.6 0.0 2.4 2 0 0 2 2 2 2 ABC transporter MMR_HSR1_Xtn PF16897.5 AJD68616.1 - 1.1e-05 25.3 0.0 0.0016 18.4 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain TniB PF05621.11 AJD68616.1 - 1.2e-05 24.8 0.0 0.0079 15.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial TniB protein cobW PF02492.19 AJD68616.1 - 1.5e-05 24.6 0.7 0.0076 15.8 0.0 3.6 2 2 1 4 4 4 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 AJD68616.1 - 5.4e-05 23.7 2.7 0.03 14.7 0.1 3.0 2 1 0 2 2 2 2 AAA ATPase domain ATP_bind_1 PF03029.17 AJD68616.1 - 0.00019 21.3 0.0 5.2 6.8 0.0 3.9 3 1 1 4 4 4 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 AJD68616.1 - 0.00075 19.8 0.1 4.2 7.6 0.0 3.7 3 1 0 3 3 3 1 AAA domain AAA_18 PF13238.6 AJD68616.1 - 0.0011 19.6 0.0 3.8 8.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain Arf PF00025.21 AJD68616.1 - 0.0016 17.9 0.0 1.9 7.9 0.0 3.7 4 0 0 4 4 4 1 ADP-ribosylation factor family Ploopntkinase3 PF18751.1 AJD68616.1 - 0.0019 18.1 0.1 1.1 9.2 0.0 2.9 2 1 0 2 2 2 1 P-loop Nucleotide Kinase3 NB-ARC PF00931.22 AJD68616.1 - 0.0021 17.3 0.0 0.61 9.2 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain NTPase_1 PF03266.15 AJD68616.1 - 0.0028 17.6 0.1 1.2 9.1 0.0 3.0 3 0 0 3 3 3 1 NTPase AAA_29 PF13555.6 AJD68616.1 - 0.003 17.3 0.0 2.2 8.1 0.0 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain SRPRB PF09439.10 AJD68616.1 - 0.0031 17.0 0.0 0.91 8.9 0.0 2.3 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit RNA_helicase PF00910.22 AJD68616.1 - 0.0051 17.2 0.0 3.9 7.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA PF00004.29 AJD68616.1 - 0.0081 16.6 0.0 8.3 6.8 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 AJD68616.1 - 0.0084 16.3 0.0 1.7 8.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 AJD68616.1 - 0.0086 16.3 0.0 3 8.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 AJD68616.1 - 0.012 15.1 0.0 0.55 9.6 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MnmE_helical PF12631.7 AJD68616.1 - 0.039 14.1 0.0 0.54 10.4 0.0 2.1 1 1 0 1 1 1 0 MnmE helical domain AAA_25 PF13481.6 AJD68616.1 - 0.053 13.1 0.1 17 4.9 0.0 3.4 3 1 0 3 3 3 0 AAA domain AAA_24 PF13479.6 AJD68616.1 - 0.061 13.0 0.0 3.8 7.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain Septin PF00735.18 AJD68616.1 - 0.061 12.6 0.0 4.9 6.4 0.0 2.2 2 0 0 2 2 2 0 Septin AAA_15 PF13175.6 AJD68616.1 - 0.12 12.0 0.0 4.1 7.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MoeA_N PF03453.17 AJD68617.1 - 3.5e-41 140.6 1.4 7.3e-41 139.5 1.5 1.5 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 AJD68617.1 - 6.9e-27 93.9 0.0 1e-26 93.3 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 AJD68617.1 - 9.9e-17 60.9 0.2 5.2e-16 58.6 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) ThiF PF00899.21 AJD68618.1 - 1.7e-69 233.9 0.0 2.4e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 ThiF family Rhodanese PF00581.20 AJD68618.1 - 3.4e-07 30.7 0.0 7.6e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Sacchrp_dh_NADP PF03435.18 AJD68618.1 - 0.0007 19.9 1.4 0.0042 17.3 1.4 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 AJD68618.1 - 0.025 14.7 0.2 0.087 12.9 0.1 2.1 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TonB_dep_Rec PF00593.24 AJD68619.1 - 2.1e-37 130.1 31.6 2.1e-37 130.1 31.6 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD68619.1 - 1.8e-13 51.0 3.3 2.2e-13 50.7 1.4 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain DUF4142 PF13628.6 AJD68621.1 - 5.9e-28 97.8 6.5 5.9e-28 97.8 6.5 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4142) DUF305 PF03713.13 AJD68621.1 - 5.7e-05 23.3 8.1 0.0006 20.0 8.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF305) Mucin PF01456.17 AJD68621.1 - 0.35 10.9 5.3 0.62 10.1 4.8 1.8 1 1 0 1 1 1 0 Mucin-like glycoprotein Polyketide_cyc2 PF10604.9 AJD68622.1 - 0.0011 19.3 0.1 0.0014 18.9 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ADH_N PF08240.12 AJD68623.1 - 4e-25 87.8 0.7 9.5e-25 86.6 0.7 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AJD68623.1 - 1e-17 64.3 3.7 5.6e-14 52.2 0.4 2.6 3 0 0 3 3 3 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 AJD68623.1 - 2.8e-09 36.7 2.5 3e-09 36.6 0.0 2.3 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-associated Methyltransf_11 PF08241.12 AJD68623.1 - 0.022 15.4 0.2 0.12 13.0 0.2 2.1 1 1 0 1 1 1 0 Methyltransferase domain ADH_zinc_N_2 PF13602.6 AJD68623.1 - 0.061 14.4 0.9 0.66 11.0 0.9 2.2 1 1 0 1 1 1 0 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 AJD68623.1 - 0.065 12.5 0.2 0.1 11.9 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 AJD68623.1 - 0.098 13.4 0.2 0.36 11.5 0.2 2.0 1 1 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 AJD68623.1 - 0.16 11.3 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1264 PF06884.11 AJD68624.1 - 5.7e-60 201.8 0.0 7.1e-60 201.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1264) Exo_endo_phos PF03372.23 AJD68625.1 - 1.3e-14 54.3 3.2 2.2e-14 53.6 3.2 1.3 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family PQ-loop PF04193.14 AJD68626.1 - 1.7e-05 24.5 3.9 1.7e-05 24.5 3.9 1.7 1 1 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.16 AJD68626.1 - 0.00025 21.0 1.7 0.0003 20.8 1.7 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange KCH PF16944.5 AJD68626.1 - 0.0097 15.7 0.5 0.011 15.5 0.5 1.3 1 0 0 1 1 1 1 Fungal potassium channel DUF368 PF04018.13 AJD68626.1 - 0.021 14.4 1.2 0.025 14.2 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF368) DUF997 PF06196.12 AJD68626.1 - 0.061 13.3 3.8 3.3 7.8 0.6 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF997) DUF5310 PF17237.2 AJD68626.1 - 3 7.8 6.1 9.8 6.1 2.4 3.2 1 1 1 2 2 2 0 Family of unknown function (DUF5310) PhoR PF11808.8 AJD68626.1 - 4 7.9 8.7 9.1 6.8 1.2 2.4 1 1 1 2 2 2 0 Phosphate regulon sensor protein PhoR MoeA_N PF03453.17 AJD68627.1 - 1.3e-39 135.5 2.5 2e-39 134.9 2.5 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 AJD68627.1 - 2.3e-25 88.9 0.0 4.4e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 AJD68627.1 - 3.3e-06 27.2 0.0 1.2e-05 25.4 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NTP_transf_3 PF12804.7 AJD68628.1 - 1e-28 100.7 7.1 1.5e-28 100.2 6.8 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 AJD68628.1 - 0.038 13.7 0.0 0.23 11.2 0.0 1.9 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Abhydrolase_1 PF00561.20 AJD68630.1 - 6.4e-27 94.8 0.1 1.2e-24 87.4 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD68630.1 - 4.1e-22 78.6 0.8 6.4e-14 51.8 0.5 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD68630.1 - 2.7e-20 73.9 1.1 4.4e-20 73.2 1.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 AJD68630.1 - 6.7e-08 32.6 0.0 4.7e-05 23.3 0.0 2.4 2 1 0 2 2 2 2 Serine hydrolase Peptidase_S9 PF00326.21 AJD68630.1 - 5.5e-07 29.3 0.4 0.00011 21.8 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 AJD68630.1 - 3.4e-05 23.5 0.1 0.00014 21.5 0.1 1.8 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.7 AJD68630.1 - 0.00033 20.5 0.1 0.08 12.7 0.0 2.2 2 0 0 2 2 2 1 Alpha/beta hydrolase family DUF1749 PF08538.10 AJD68630.1 - 0.0026 16.9 0.0 0.0037 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1749) UCR_Fe-S_N PF10399.9 AJD68630.1 - 0.0091 15.3 0.4 0.021 14.2 0.4 1.6 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Peptidase_S15 PF02129.18 AJD68630.1 - 0.012 15.3 0.2 8.8 5.8 0.0 2.7 2 2 1 3 3 3 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.16 AJD68630.1 - 0.027 14.3 0.0 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Ndr PF03096.14 AJD68630.1 - 0.047 12.4 0.0 0.077 11.7 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF915 PF06028.11 AJD68630.1 - 0.073 12.4 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) FSH1 PF03959.13 AJD68630.1 - 0.075 12.7 0.0 0.18 11.4 0.0 1.5 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Chlorophyllase2 PF12740.7 AJD68630.1 - 0.081 11.8 0.1 0.19 10.6 0.1 1.6 1 1 0 1 1 1 0 Chlorophyllase enzyme ETF PF01012.21 AJD68630.1 - 0.084 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Electron transfer flavoprotein domain PsbQ PF05757.11 AJD68630.1 - 0.15 11.7 0.1 0.36 10.5 0.1 1.5 2 0 0 2 2 2 0 Oxygen evolving enhancer protein 3 (PsbQ) Nramp PF01566.18 AJD68631.1 - 1.6e-130 435.3 30.8 2e-130 434.9 30.8 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Fe_dep_repr_C PF02742.15 AJD68632.1 - 2.4e-13 50.0 0.2 5.6e-13 48.8 0.1 1.6 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 AJD68632.1 - 2.1e-12 47.1 0.0 4.2e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 AJD68632.1 - 9.9e-08 31.8 2.6 1.1e-07 31.6 0.1 2.3 3 1 0 3 3 3 1 MarR family HTH_24 PF13412.6 AJD68632.1 - 8.1e-07 28.5 0.0 1.5e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 AJD68632.1 - 2e-06 27.6 0.0 3.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 AJD68632.1 - 3.8e-06 26.8 0.1 3.5e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 AJD68632.1 - 4.7e-06 26.3 0.0 1.4e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.21 AJD68632.1 - 2e-05 24.1 0.1 4.4e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 AJD68632.1 - 2.8e-05 23.9 0.0 5.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 AJD68632.1 - 0.00023 21.3 2.2 0.00052 20.1 0.8 2.4 2 1 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin HTH_23 PF13384.6 AJD68632.1 - 0.00037 20.2 0.9 0.0025 17.5 0.1 2.7 3 2 0 3 3 3 1 Homeodomain-like domain KORA PF16509.5 AJD68632.1 - 0.00083 19.6 0.3 0.0033 17.7 0.1 2.0 2 1 0 2 2 2 1 TrfB plasmid transcriptional repressor HTH_27 PF13463.6 AJD68632.1 - 0.0017 18.8 0.0 0.0039 17.7 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_29 PF13551.6 AJD68632.1 - 0.0032 17.4 0.0 0.018 15.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_1 PF00126.27 AJD68632.1 - 0.0044 17.0 0.1 0.031 14.2 0.1 2.3 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AJD68632.1 - 0.005 16.6 0.3 3 7.7 0.1 2.5 2 1 0 2 2 2 2 DeoR-like helix-turn-helix domain HTH_31 PF13560.6 AJD68632.1 - 0.006 16.9 1.9 1 9.7 0.5 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.6 AJD68632.1 - 0.0082 16.1 0.0 0.02 14.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AJD68632.1 - 0.0085 15.9 1.2 0.027 14.3 0.1 2.3 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 AJD68632.1 - 0.02 15.3 0.0 0.059 13.7 0.0 1.9 2 1 1 3 3 2 0 Transcriptional regulator HTH_28 PF13518.6 AJD68632.1 - 0.021 15.0 0.1 0.085 13.0 0.1 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 AJD68632.1 - 0.03 14.5 0.3 0.32 11.3 0.1 2.3 1 1 1 2 2 2 0 PaaX-like protein HTH_38 PF13936.6 AJD68632.1 - 0.046 13.5 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 AJD68632.1 - 0.05 14.0 0.0 0.14 12.5 0.0 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.20 AJD68632.1 - 0.055 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_6 PF01418.17 AJD68632.1 - 0.066 13.2 0.0 5.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HemN_C PF06969.16 AJD68632.1 - 0.067 13.3 0.0 0.29 11.2 0.0 2.0 3 0 0 3 3 2 0 HemN C-terminal domain DUF5596 PF18082.1 AJD68632.1 - 0.083 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5596) STD1 PF17235.2 AJD68632.1 - 0.23 11.1 0.0 0.37 10.4 0.0 1.3 1 1 0 1 1 1 0 STD1/MTH1 dCMP_cyt_deam_1 PF00383.23 AJD68633.1 - 3.3e-28 97.5 0.2 4.6e-28 97.1 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 AJD68633.1 - 2.2e-23 82.5 0.0 2.7e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 AJD68633.1 - 2.8e-05 24.2 4.4 0.0049 16.9 2.4 2.2 1 1 1 2 2 2 2 Bd3614-like deaminase SNAD4 PF18750.1 AJD68633.1 - 0.0001 22.4 0.0 0.00016 21.8 0.0 1.2 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC3 PF18771.1 AJD68633.1 - 0.0045 17.1 0.0 0.0069 16.5 0.0 1.2 1 0 0 1 1 1 1 APOBEC3 NAD1 PF18778.1 AJD68633.1 - 0.0057 16.8 0.0 0.008 16.3 0.0 1.2 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 AJD68633.1 - 0.0059 16.7 0.0 0.0083 16.2 0.0 1.2 1 0 0 1 1 1 1 APOBEC2 NAD2 PF18782.1 AJD68633.1 - 0.014 15.5 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Novel AID APOBEC clade 2 APOBEC_N PF08210.11 AJD68633.1 - 0.047 13.6 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 APOBEC-like N-terminal domain dCMP_cyt_deam_2 PF08211.12 AJD68633.1 - 0.12 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Cytidine and deoxycytidylate deaminase zinc-binding region Inv-AAD PF18785.1 AJD68633.1 - 0.13 12.1 0.2 0.34 10.8 0.2 1.7 1 1 0 1 1 1 0 Invertebrate-AID/APOBEC-deaminase RNase_T PF00929.24 AJD68634.1 - 1.8e-26 93.6 0.0 2.1e-26 93.5 0.0 1.0 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 AJD68634.1 - 1.1e-05 25.4 0.6 1.9e-05 24.7 0.6 1.3 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like DUF2252 PF10009.9 AJD68634.1 - 0.024 13.7 0.5 0.03 13.4 0.5 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) MS_channel PF00924.18 AJD68635.1 - 4.9e-49 166.7 0.3 6.4e-49 166.3 0.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 AJD68635.1 - 0.0012 18.8 3.1 0.0027 17.6 0.3 2.4 1 1 1 2 2 2 1 Conserved TM helix PPDK_N PF01326.19 AJD68636.1 - 1.3e-111 373.1 0.0 1.8e-111 372.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 AJD68636.1 - 1.7e-61 207.9 0.0 2.6e-61 207.3 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 AJD68636.1 - 8.6e-25 86.3 0.9 2.2e-24 85.0 0.9 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Polysacc_deac_2 PF04748.13 AJD68636.1 - 0.04 13.1 0.0 0.077 12.2 0.0 1.4 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase Kinase-PPPase PF03618.14 AJD68637.1 - 2.9e-71 240.3 0.0 3.2e-71 240.1 0.0 1.0 1 0 0 1 1 1 1 Kinase/pyrophosphorylase DUF1249 PF06853.12 AJD68638.1 - 6.2e-27 93.9 0.0 7.7e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1249) NUDIX PF00293.28 AJD68639.1 - 1.1e-15 57.8 0.0 1.4e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain adh_short_C2 PF13561.6 AJD68640.1 - 4.5e-47 160.6 5.6 6.8e-47 160.0 5.6 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD68640.1 - 1.2e-45 155.4 1.1 1.5e-45 155.1 1.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD68640.1 - 5.6e-11 42.7 4.9 8.7e-11 42.1 3.9 1.6 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 AJD68640.1 - 2.5e-05 23.9 1.1 5.5e-05 22.7 0.8 1.7 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD68640.1 - 0.00015 21.7 3.7 0.00026 20.9 3.7 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 AJD68640.1 - 0.00051 19.3 0.0 0.0008 18.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3HCDH_N PF02737.18 AJD68640.1 - 0.002 18.0 0.4 0.003 17.5 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 AJD68640.1 - 0.0022 17.1 0.9 0.0032 16.6 0.9 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain RRM_occluded PF16842.5 AJD68640.1 - 0.14 12.0 0.0 0.55 10.1 0.0 1.9 2 0 0 2 2 2 0 Occluded RNA-recognition motif NmrA PF05368.13 AJD68640.1 - 0.3 10.6 1.6 0.44 10.1 1.6 1.2 1 0 0 1 1 1 0 NmrA-like family CDP-OH_P_transf PF01066.21 AJD68641.1 - 3e-13 50.3 1.6 5.3e-13 49.5 0.5 1.9 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PHA_synth_III_E PF09712.10 AJD68642.1 - 1.7e-81 273.8 28.9 1.1e-79 267.8 28.9 2.1 1 1 0 1 1 1 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.11 AJD68642.1 - 0.00034 20.6 3.6 0.00036 20.6 0.1 2.6 2 1 1 3 3 3 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Apolipoprotein PF01442.18 AJD68642.1 - 0.026 14.4 15.2 0.26 11.1 6.3 2.8 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain Suf PF05843.14 AJD68642.1 - 0.072 13.1 2.6 0.12 12.3 2.6 1.4 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) TipAS PF07739.13 AJD68642.1 - 1.8 9.1 17.3 2.5 8.7 0.1 3.7 3 1 1 4 4 4 0 TipAS antibiotic-recognition domain CHASE3 PF05227.13 AJD68642.1 - 3.6 7.5 17.6 6.5 6.7 1.4 3.7 2 1 2 4 4 4 0 CHASE3 domain OmpH PF03938.14 AJD68642.1 - 6.6 7.1 11.1 1.1 9.7 2.6 2.9 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) CDC27 PF09507.10 AJD68642.1 - 7 5.9 15.1 11 5.2 15.1 1.3 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 Abhydrolase_1 PF00561.20 AJD68643.1 - 4.4e-23 82.2 0.1 5.4e-23 82.0 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD68643.1 - 9.3e-07 28.3 0.1 0.027 13.7 0.0 2.4 3 0 0 3 3 3 2 Serine aminopeptidase, S33 DUF3141 PF11339.8 AJD68643.1 - 7.6e-05 21.3 0.2 0.00084 17.9 0.2 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3141) PhaC_N PF07167.13 AJD68643.1 - 0.00011 21.9 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DLH PF01738.18 AJD68643.1 - 0.0075 15.8 0.0 0.49 9.9 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family BAAT_C PF08840.11 AJD68643.1 - 0.064 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Palm_thioest PF02089.15 AJD68643.1 - 0.22 11.3 0.0 0.38 10.6 0.0 1.5 1 1 0 1 1 1 0 Palmitoyl protein thioesterase PspC PF04024.12 AJD68644.1 - 1.8e-19 69.3 1.6 1.9e-19 69.2 1.6 1.0 1 0 0 1 1 1 1 PspC domain DAO PF01266.24 AJD68646.1 - 1.7e-48 166.0 1.4 1.9e-48 165.9 1.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AJD68646.1 - 1.9e-07 30.6 3.1 0.00029 20.1 0.3 2.5 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD68646.1 - 3.1e-07 30.0 0.0 0.01 15.1 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AJD68646.1 - 1.8e-06 28.0 0.2 0.031 14.3 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 AJD68646.1 - 1.1e-05 25.6 0.8 3e-05 24.2 0.5 2.0 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 AJD68646.1 - 8.3e-05 22.0 0.0 0.00017 21.0 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 AJD68646.1 - 8.9e-05 21.9 0.3 0.042 13.1 0.0 2.6 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 AJD68646.1 - 9.3e-05 21.6 0.3 0.046 12.8 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.27 AJD68646.1 - 0.00034 21.1 0.3 0.0023 18.5 0.9 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD68646.1 - 0.00041 19.2 0.1 0.13 11.0 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 AJD68646.1 - 0.00085 18.5 1.5 0.0045 16.1 1.5 1.9 1 1 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.17 AJD68646.1 - 0.0067 17.0 0.1 0.019 15.6 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent K_oxygenase PF13434.6 AJD68646.1 - 0.0091 15.2 0.0 0.2 10.7 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Shikimate_DH PF01488.20 AJD68646.1 - 0.013 15.5 0.1 0.028 14.5 0.1 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 AJD68646.1 - 0.044 13.7 0.1 0.076 12.9 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 AJD68646.1 - 0.053 13.2 0.4 0.23 11.1 0.5 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 AJD68646.1 - 0.078 13.4 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 AJD68646.1 - 0.08 13.2 0.5 0.14 12.4 0.5 1.3 1 0 0 1 1 1 0 TrkA-N domain Trp_halogenase PF04820.14 AJD68646.1 - 0.4 9.5 1.0 0.7 8.7 1.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Tex_N PF09371.10 AJD68648.1 - 1.5e-67 226.8 0.0 2.9e-67 225.9 0.0 1.5 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 AJD68648.1 - 2.3e-54 183.2 0.1 5.3e-54 182.0 0.1 1.6 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 AJD68648.1 - 9.4e-28 96.3 0.0 2.1e-27 95.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif S1 PF00575.23 AJD68648.1 - 6.9e-21 74.4 1.2 1.4e-20 73.4 1.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain HHH_9 PF17674.1 AJD68648.1 - 7.6e-21 74.8 0.0 2.4e-20 73.2 0.0 2.0 1 0 0 1 1 1 1 HHH domain HHH_7 PF14635.6 AJD68648.1 - 1.6e-08 34.9 0.0 3.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif YqgF PF14639.6 AJD68648.1 - 1.7e-06 27.9 0.0 5.3e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HHH_6 PF14579.6 AJD68648.1 - 0.0013 18.9 0.0 0.0079 16.4 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF460 PF04312.13 AJD68648.1 - 0.018 14.7 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF460) PAS_3 PF08447.12 AJD68649.1 - 8.2e-31 106.2 2.8 1e-19 70.6 0.6 3.2 3 0 0 3 3 2 2 PAS fold PAS_4 PF08448.10 AJD68649.1 - 4.1e-28 97.8 4.9 5.3e-13 49.2 0.3 4.4 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 AJD68649.1 - 1.6e-26 93.0 0.0 2.8e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 AJD68649.1 - 3.9e-24 84.8 0.0 5.2e-16 58.7 0.0 2.8 2 1 0 2 2 2 2 PAS fold GAF PF01590.26 AJD68649.1 - 7.7e-22 78.4 4.5 1.2e-11 45.3 0.2 3.8 4 0 0 4 4 4 2 GAF domain PAS_9 PF13426.7 AJD68649.1 - 6.7e-20 71.3 0.0 2.6e-11 43.7 0.0 2.8 2 1 0 2 2 2 2 PAS domain GAF_2 PF13185.6 AJD68649.1 - 1.1e-17 64.6 7.3 1.4e-09 38.4 0.1 4.4 6 0 0 6 6 5 2 GAF domain Response_reg PF00072.24 AJD68649.1 - 6.2e-17 61.8 0.0 1.5e-16 60.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AJD68649.1 - 2e-14 53.4 0.1 7.5e-14 51.5 0.1 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 AJD68649.1 - 2e-12 46.8 0.1 3.6e-06 26.8 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 AJD68649.1 - 1.6e-09 38.2 0.3 5e-06 26.9 0.0 2.8 2 0 0 2 2 2 2 GAF domain MctB PF11382.8 AJD68649.1 - 0.055 13.2 0.2 0.055 13.2 0.2 1.8 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB PAS_11 PF14598.6 AJD68649.1 - 0.076 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 PAS domain HATPase_c_2 PF13581.6 AJD68649.1 - 0.11 12.5 0.0 0.5 10.3 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain BRCT_3 PF18428.1 AJD68649.1 - 0.17 12.0 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain Response_reg PF00072.24 AJD68650.1 - 0.0002 21.5 0.2 0.00022 21.4 0.2 1.2 1 1 0 1 1 1 1 Response regulator receiver domain Cytochrom_C PF00034.21 AJD68652.1 - 4.5e-07 30.9 3.7 7.8e-07 30.2 1.9 2.2 1 1 1 2 2 2 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AJD68652.1 - 6.8e-07 29.5 0.6 1.1e-06 28.8 0.4 1.5 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III DUF3365 PF11845.8 AJD68652.1 - 0.15 12.4 0.4 0.26 11.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3365) Cytochrom_C PF00034.21 AJD68653.1 - 3.1e-08 34.6 0.7 1.6e-07 32.3 0.7 2.0 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AJD68653.1 - 3.5e-06 27.2 0.0 5.3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Arabinose_trans PF04602.12 AJD68653.1 - 0.069 12.0 2.5 0.084 11.7 2.5 1.1 1 0 0 1 1 1 0 Mycobacterial cell wall arabinan synthesis protein HlyD_D23 PF16576.5 AJD68654.1 - 1.4e-28 99.6 0.7 2.2e-28 99.0 0.7 1.2 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD68654.1 - 3.1e-24 85.7 5.8 1.8e-20 73.6 0.2 3.0 3 1 0 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD68654.1 - 7e-11 41.8 7.3 1.9e-08 34.0 1.4 3.4 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 AJD68654.1 - 2.4e-08 33.8 0.5 1.1e-07 31.6 0.5 2.0 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD68654.1 - 5.1e-07 29.4 0.1 0.0048 16.7 0.0 2.8 2 0 0 2 2 2 2 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 AJD68654.1 - 0.024 14.4 0.1 0.2 11.4 0.0 2.3 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DNA_pol_B_3 PF08408.10 AJD68654.1 - 0.24 11.6 0.0 0.39 10.9 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase family B viral insert HlyD_2 PF12700.7 AJD68654.1 - 0.25 10.0 0.0 4.3 6.0 0.0 2.2 1 1 0 2 2 2 0 HlyD family secretion protein ACR_tran PF00873.19 AJD68655.1 - 4.9e-249 829.0 26.3 1.4e-115 387.2 1.0 3.0 2 1 1 3 3 3 3 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD68655.1 - 3.6e-10 39.3 47.1 2.2e-07 30.1 12.6 2.8 3 1 0 3 3 3 2 MMPL family ACR_tran PF00873.19 AJD68656.1 - 5.2e-197 656.7 0.7 6.6e-197 656.4 0.7 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 AJD68656.1 - 1.1e-11 44.5 26.7 5e-07 29.3 7.3 2.5 3 0 0 3 3 3 2 Protein export membrane protein MMPL PF03176.15 AJD68656.1 - 0.017 14.1 39.2 0.0064 15.5 12.8 3.2 2 1 0 2 2 2 0 MMPL family POTRA_1 PF08478.10 AJD68656.1 - 0.13 12.6 0.0 0.91 9.9 0.0 2.4 2 0 0 2 2 2 0 POTRA domain, FtsQ-type Patched PF02460.18 AJD68656.1 - 1.4 6.9 25.7 0.027 12.6 12.5 2.1 2 0 0 2 2 2 0 Patched family Aldolase PF01081.19 AJD68657.1 - 1.4e-63 213.9 0.0 1.6e-63 213.7 0.0 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase ILVD_EDD PF00920.21 AJD68658.1 - 2.3e-149 498.4 0.0 2.6e-149 498.2 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family Glucosamine_iso PF01182.20 AJD68659.1 - 2e-43 148.9 0.0 2.2e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Glucokinase PF02685.16 AJD68660.1 - 1.3e-111 372.6 0.0 1.5e-111 372.4 0.0 1.0 1 0 0 1 1 1 1 Glucokinase G6PD_C PF02781.16 AJD68661.1 - 2.3e-97 325.7 0.0 3.1e-97 325.3 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, C-terminal domain G6PD_N PF00479.22 AJD68661.1 - 1.6e-42 146.2 0.0 2.4e-42 145.6 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain ABC_tran PF00005.27 AJD68662.1 - 6.8e-30 104.4 0.0 1e-29 103.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 AJD68662.1 - 8.6e-12 45.7 0.0 3.6e-11 43.7 0.0 2.2 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 AJD68662.1 - 9.2e-10 38.8 0.1 0.00064 19.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 AJD68662.1 - 2.2e-09 37.4 0.1 5.9e-09 36.0 0.1 1.8 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.17 AJD68662.1 - 2.1e-08 34.3 0.1 1.1e-07 32.1 0.0 2.3 3 0 0 3 3 1 1 TOBE domain SMC_N PF02463.19 AJD68662.1 - 7.1e-06 25.6 0.0 2e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 AJD68662.1 - 0.00013 22.4 3.5 0.00044 20.8 0.8 2.8 3 0 0 3 3 2 1 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 AJD68662.1 - 0.00017 21.5 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 AJD68662.1 - 0.00049 20.5 0.2 0.00099 19.5 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 AJD68662.1 - 0.00096 19.1 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 AJD68662.1 - 0.0022 18.2 0.1 0.0037 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD68662.1 - 0.0024 17.6 0.0 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 AJD68662.1 - 0.0047 16.9 0.3 0.032 14.1 0.1 2.0 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.6 AJD68662.1 - 0.0048 17.4 0.0 0.007 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD68662.1 - 0.005 17.3 0.0 0.014 15.8 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 AJD68662.1 - 0.011 15.5 0.1 0.02 14.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AJD68662.1 - 0.02 15.1 0.2 0.035 14.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD68662.1 - 0.044 14.3 0.0 0.081 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AJD68662.1 - 0.046 13.4 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 AJD68662.1 - 0.046 14.0 0.0 0.093 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 AJD68662.1 - 0.048 13.6 0.2 0.14 12.2 0.1 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 AJD68662.1 - 0.069 12.7 0.4 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 AJD68662.1 - 0.087 12.2 0.0 0.23 10.8 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 AJD68662.1 - 0.13 11.4 0.1 0.26 10.4 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 AJD68662.1 - 0.14 12.1 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 AJD68662.1 - 0.15 12.2 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 AJD68662.1 - 0.17 12.3 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase GCV_T PF01571.21 AJD68663.1 - 1.5e-06 27.8 0.0 2.5e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DUF1674 PF07896.12 AJD68664.1 - 2.6e-17 63.0 2.0 3.1e-17 62.8 2.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1674) Sdh_cyt PF01127.22 AJD68665.1 - 1.8e-21 76.4 8.3 2.2e-21 76.1 8.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NADH_dh_m_C1 PF15088.6 AJD68665.1 - 0.036 13.7 1.9 0.079 12.6 1.9 1.5 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial Sdh_cyt PF01127.22 AJD68666.1 - 5.1e-15 55.6 7.4 6.2e-15 55.3 7.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CybS PF05328.12 AJD68666.1 - 0.001 18.8 4.3 0.0036 17.0 4.3 1.7 1 1 0 1 1 1 1 CybS, succinate dehydrogenase cytochrome B small subunit FAD_binding_2 PF00890.24 AJD68667.1 - 5e-122 408.0 4.9 6.5e-122 407.6 4.9 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 AJD68667.1 - 9.5e-43 145.2 0.2 1.4e-42 144.7 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Thi4 PF01946.17 AJD68667.1 - 0.00017 20.9 0.3 0.013 14.8 0.1 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 AJD68667.1 - 0.0003 20.1 1.7 0.00067 19.0 0.4 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AJD68667.1 - 0.00051 19.2 0.6 0.038 13.1 1.4 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 AJD68667.1 - 0.018 14.3 1.4 0.029 13.6 0.3 1.8 2 0 0 2 2 2 0 FAD binding domain DAO PF01266.24 AJD68667.1 - 0.076 12.6 0.7 0.24 10.9 0.3 1.8 1 1 0 2 2 2 0 FAD dependent oxidoreductase Fer2_3 PF13085.6 AJD68669.1 - 1.8e-33 114.8 0.0 2.6e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 AJD68669.1 - 1.5e-09 38.3 3.3 1.5e-09 38.3 3.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 AJD68669.1 - 9.6e-08 32.4 5.1 9.6e-08 32.4 5.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 AJD68669.1 - 1.1e-07 31.8 2.4 1.1e-07 31.8 2.4 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 AJD68669.1 - 0.018 15.0 1.3 0.018 15.0 1.3 2.1 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.6 AJD68669.1 - 0.019 15.2 4.9 0.019 15.2 4.9 2.7 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 AJD68669.1 - 0.29 11.8 17.6 0.26 11.9 9.1 3.5 2 2 1 3 3 3 0 4Fe-4S dicluster domain Sdh5 PF03937.16 AJD68670.1 - 6e-23 80.6 1.2 6.7e-23 80.4 1.2 1.0 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase DUF772 PF05598.11 AJD68670.1 - 0.14 12.2 0.7 0.48 10.5 0.1 2.0 1 1 0 2 2 2 0 Transposase domain (DUF772) DUF4131 PF13567.6 AJD68671.1 - 0.013 15.2 3.2 0.014 15.1 3.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MacB_PCD PF12704.7 AJD68672.1 - 2.9e-17 63.7 1.3 2.9e-17 63.7 1.3 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 AJD68672.1 - 6.3e-12 45.8 11.4 9.7e-12 45.2 3.1 3.0 3 0 0 3 3 3 2 FtsX-like permease family Trp_oprn_chp PF09534.10 AJD68672.1 - 0.85 9.4 9.3 2.5 7.9 0.7 3.1 3 0 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) ABC_tran PF00005.27 AJD68673.1 - 6.4e-30 104.5 0.0 8.9e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 AJD68673.1 - 0.00027 20.6 0.1 0.00056 19.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AJD68673.1 - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 AJD68673.1 - 0.0015 18.0 0.0 0.27 10.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AJD68673.1 - 0.0037 17.1 0.3 0.31 10.8 0.5 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 AJD68673.1 - 0.0057 16.9 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AJD68673.1 - 0.013 15.6 0.1 0.034 14.2 0.0 1.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.6 AJD68673.1 - 0.036 14.4 1.6 0.072 13.5 1.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 AJD68673.1 - 0.094 12.8 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Dynamin family AAA_25 PF13481.6 AJD68673.1 - 0.098 12.2 1.1 0.28 10.7 0.2 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AJD68673.1 - 0.15 12.0 0.9 0.46 10.4 0.2 2.0 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 AJD68673.1 - 0.19 12.2 0.1 0.3 11.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 AJD68673.1 - 0.22 11.6 0.3 0.35 10.9 0.3 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain Epimerase PF01370.21 AJD68674.1 - 6.9e-09 35.5 0.0 1.7e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD68674.1 - 0.00022 21.2 0.0 0.00032 20.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 AJD68674.1 - 0.045 13.1 0.6 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase NmrA PF05368.13 AJD68674.1 - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family Competence PF03772.16 AJD68675.1 - 1.2e-58 198.6 40.5 1.2e-58 198.6 40.5 2.0 2 0 0 2 2 2 1 Competence protein DUF4131 PF13567.6 AJD68675.1 - 3.4e-22 78.9 8.0 3.4e-22 78.9 8.0 5.2 3 3 1 4 4 4 1 Domain of unknown function (DUF4131) Lactamase_B PF00753.27 AJD68675.1 - 8.5e-12 45.5 2.3 1.9e-11 44.3 2.3 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD68675.1 - 6.3e-07 29.1 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 AJD68675.1 - 0.1 12.0 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain MotA_ExbB PF01618.16 AJD68676.1 - 1.2e-31 109.1 0.1 1.5e-31 108.8 0.1 1.1 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 AJD68677.1 - 1.9e-30 105.7 0.1 2.1e-30 105.5 0.1 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR ABC_membrane PF00664.23 AJD68678.1 - 2.4e-39 135.7 3.8 3.1e-39 135.3 3.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 AJD68678.1 - 8.6e-32 110.5 0.0 1.7e-31 109.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AJD68678.1 - 1.4e-11 44.3 0.2 1.4e-07 31.2 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD68678.1 - 3e-05 24.5 0.3 9.1e-05 22.9 0.3 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 AJD68678.1 - 0.00015 21.6 0.6 0.00069 19.4 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD68678.1 - 0.00045 20.5 0.1 0.0068 16.7 0.1 2.4 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AJD68678.1 - 0.0013 17.6 0.1 0.073 11.9 0.0 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 AJD68678.1 - 0.0046 16.7 0.1 0.011 15.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.8 AJD68678.1 - 0.012 13.2 0.0 0.017 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 AJD68678.1 - 0.013 15.4 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_21 PF13304.6 AJD68678.1 - 0.022 14.6 0.0 0.07 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system ThrE_2 PF12821.7 AJD68678.1 - 0.038 14.1 0.8 0.038 14.1 0.8 2.0 2 0 0 2 2 1 0 Threonine/Serine exporter, ThrE DUF87 PF01935.17 AJD68678.1 - 0.076 13.1 0.0 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain MMR_HSR1 PF01926.23 AJD68678.1 - 0.08 13.0 0.0 0.27 11.3 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.6 AJD68678.1 - 0.11 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 AJD68678.1 - 0.15 12.5 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain EI24 PF07264.11 AJD68678.1 - 0.58 10.4 4.4 2.1 8.6 4.4 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) LpxK PF02606.14 AJD68679.1 - 4.8e-104 348.0 0.0 6e-104 347.7 0.0 1.0 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase MR_MLE_C PF13378.6 AJD68679.1 - 0.0089 15.6 1.3 0.59 9.6 0.0 2.3 2 0 0 2 2 2 2 Enolase C-terminal domain-like Peptidase_S77 PF03420.13 AJD68679.1 - 0.069 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Prohead core protein serine protease CTP_transf_3 PF02348.19 AJD68680.1 - 2.5e-46 158.4 0.0 3.1e-46 158.1 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 AJD68680.1 - 8.9e-09 35.9 1.0 1.2e-08 35.5 1.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain LMWPc PF01451.21 AJD68681.1 - 2.2e-37 128.6 0.0 2.6e-37 128.3 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase NHL PF01436.21 AJD68682.1 - 1.7e-28 97.2 0.0 3.6e-05 23.6 0.0 6.5 6 0 0 6 6 6 5 NHL repeat SGL PF08450.12 AJD68682.1 - 0.0016 18.0 0.0 0.49 9.9 0.0 2.6 2 1 0 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region AhpC-TSA PF00578.21 AJD68682.1 - 0.0035 17.3 0.0 0.0054 16.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Phytase-like PF13449.6 AJD68682.1 - 0.038 13.9 0.0 64 3.3 0.0 3.9 2 2 1 4 4 4 0 Esterase-like activity of phytase UvrC_HhH_N PF08459.11 AJD68683.1 - 2e-50 170.7 0.0 3.3e-50 170.0 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal UVR PF02151.19 AJD68683.1 - 1.1e-07 31.4 1.0 1.1e-07 31.4 1.0 1.9 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.24 AJD68683.1 - 2.7e-07 30.8 0.0 6.3e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_5 PF14520.6 AJD68683.1 - 1.6e-05 25.4 0.1 3.9e-05 24.2 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 AJD68683.1 - 0.0048 17.0 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif CDP-OH_P_transf PF01066.21 AJD68684.1 - 2.3e-16 60.3 0.8 2.3e-16 60.3 0.8 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase MnhB PF04039.13 AJD68684.1 - 0.011 16.1 0.6 0.011 16.1 0.6 2.7 2 2 1 3 3 3 0 Domain related to MnhB subunit of Na+/H+ antiporter Condensation PF00668.20 AJD68685.1 - 1.3e-115 386.7 0.0 3e-67 227.3 0.0 2.1 2 0 0 2 2 2 2 Condensation domain AMP-binding PF00501.28 AJD68685.1 - 2.4e-98 329.5 0.0 3.4e-98 329.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AJD68685.1 - 7.5e-10 39.7 0.0 2e-09 38.3 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.25 AJD68685.1 - 1.5e-07 31.6 0.0 3.9e-07 30.3 0.0 1.8 1 0 0 1 1 1 1 Phosphopantetheine attachment site AMP-binding PF00501.28 AJD68686.1 - 1.6e-177 590.4 0.0 4.9e-90 302.1 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme Condensation PF00668.20 AJD68686.1 - 2.9e-41 141.6 0.0 4.6e-41 141.0 0.0 1.3 1 0 0 1 1 1 1 Condensation domain AMP-binding_C PF13193.6 AJD68686.1 - 4.6e-25 88.4 3.9 3.3e-12 47.2 0.8 2.9 2 0 0 2 2 2 2 AMP-binding enzyme C-terminal domain Thioesterase PF00975.20 AJD68686.1 - 6.3e-23 82.1 2.4 1.1e-21 78.1 0.4 2.9 3 0 0 3 3 3 1 Thioesterase domain PP-binding PF00550.25 AJD68686.1 - 8.1e-23 80.6 0.9 1.6e-11 44.3 0.0 2.7 2 0 0 2 2 2 2 Phosphopantetheine attachment site DUF3325 PF11804.8 AJD68686.1 - 0.083 13.0 5.4 0.57 10.4 0.4 3.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) rve PF00665.26 AJD68687.1 - 7e-26 90.8 0.0 1.4e-25 89.8 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD68687.1 - 1.7e-23 82.2 0.1 4.3e-23 80.9 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD68687.1 - 1.6e-05 25.0 0.5 3e-05 24.0 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD68687.1 - 0.027 14.7 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 DDE domain HTH_Tnp_1 PF01527.20 AJD68688.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68688.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68688.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD68688.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD68688.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD68688.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD68688.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD68688.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD68688.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD68688.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) rve PF00665.26 AJD68689.1 - 1.9e-16 60.3 0.6 3.4e-16 59.5 0.3 1.6 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD68689.1 - 6.3e-15 55.1 1.9 1.6e-14 53.8 1.9 1.6 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD68689.1 - 0.0027 18.0 0.1 0.004 17.4 0.1 1.3 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD68690.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68690.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68690.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD68690.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD68690.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD68690.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD68690.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD68690.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68690.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD68690.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD68690.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD68690.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD68690.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD68690.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD68690.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD68690.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD68690.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD68690.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD68690.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD68690.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD68690.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein Phage_integrase PF00589.22 AJD68691.1 - 3.9e-12 46.3 0.0 5.8e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family UDPG_MGDP_dh_N PF03721.14 AJD68692.1 - 5.7e-30 104.3 0.0 9.1e-30 103.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 AJD68692.1 - 1.3e-24 86.2 0.0 2.4e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 AJD68692.1 - 3.5e-20 72.4 0.0 9.9e-20 70.9 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 AJD68692.1 - 1.5e-07 31.7 0.0 9e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 AJD68692.1 - 0.026 13.8 0.6 0.11 11.7 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 AJD68692.1 - 0.09 12.4 0.0 2.8 7.6 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 AJD68693.1 - 3.9e-105 351.9 0.0 4.5e-105 351.7 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 AJD68693.1 - 0.00037 19.8 0.6 0.0032 16.8 0.6 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AJD68693.1 - 0.00043 20.3 0.0 0.0021 18.0 0.0 2.0 1 1 0 1 1 1 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 AJD68693.1 - 0.0005 20.2 0.3 0.0015 18.7 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 AJD68693.1 - 0.0034 16.5 2.9 0.0098 15.0 0.3 2.7 2 1 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 AJD68693.1 - 0.0044 17.5 0.1 0.12 12.9 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AJD68693.1 - 0.0062 15.8 0.1 0.0062 15.8 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 AJD68693.1 - 0.01 15.4 6.3 0.069 12.7 0.2 2.4 1 1 1 2 2 2 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 AJD68693.1 - 0.024 13.9 0.5 0.049 12.9 0.5 1.5 1 0 0 1 1 1 0 FAD binding domain TubC_N PF18563.1 AJD68693.1 - 0.032 14.2 0.2 1.5 8.8 0.0 3.0 3 0 0 3 3 3 0 TubC N-terminal docking domain DUF374 PF04028.13 AJD68693.1 - 0.077 12.6 0.0 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF374) FAD_oxidored PF12831.7 AJD68693.1 - 0.11 11.8 5.7 0.26 10.6 4.5 2.0 1 1 0 2 2 2 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 AJD68693.1 - 0.24 11.3 0.1 0.38 10.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 AJD68693.1 - 0.32 10.0 4.1 0.31 10.1 2.3 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A FKBP_C PF00254.28 AJD68694.1 - 2.8e-34 117.3 0.0 3.5e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase LPAM_1 PF08139.12 AJD68694.1 - 0.5 11.0 5.5 1 10.0 5.5 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site PELOTA_1 PF15608.6 AJD68695.1 - 0.034 14.0 0.2 1 9.3 0.1 2.2 2 0 0 2 2 2 0 PELOTA RNA binding domain DUF1990 PF09348.10 AJD68695.1 - 0.1 12.6 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1990) SH3_3 PF08239.11 AJD68695.1 - 0.16 12.3 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain UPF0176_N PF17773.1 AJD68696.1 - 1.4e-25 89.5 0.1 2e-25 88.9 0.1 1.2 1 0 0 1 1 1 1 UPF0176 acylphosphatase like domain Rhodanese PF00581.20 AJD68696.1 - 5.4e-06 26.9 0.0 1.1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Acylphosphatase PF00708.18 AJD68696.1 - 0.011 16.1 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 Acylphosphatase Rhodanese_C PF12368.8 AJD68696.1 - 0.14 12.5 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 Rhodanase C-terminal BLUF PF04940.12 AJD68696.1 - 0.15 12.2 0.0 0.3 11.3 0.0 1.5 2 0 0 2 2 2 0 Sensors of blue-light using FAD Response_reg PF00072.24 AJD68697.1 - 6.1e-25 87.6 0.0 9.5e-25 87.0 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD68697.1 - 1.4e-15 56.5 0.2 3.3e-15 55.4 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD68697.1 - 0.00021 20.9 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AJD68697.1 - 0.00094 18.9 0.0 0.0024 17.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AJD68697.1 - 0.0029 17.3 0.1 0.007 16.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD68697.1 - 0.0031 17.0 0.1 0.0086 15.6 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 AJD68697.1 - 0.0031 17.8 0.0 0.023 15.0 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 AJD68697.1 - 0.0032 17.9 0.0 0.0086 16.5 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AJD68697.1 - 0.0074 15.8 0.1 0.02 14.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 AJD68697.1 - 0.012 15.6 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 AJD68697.1 - 0.015 15.2 0.2 0.056 13.4 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 AJD68697.1 - 0.092 12.8 0.4 0.25 11.4 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix Sigma70_ECF PF07638.11 AJD68697.1 - 0.14 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor RNase_E_G PF10150.9 AJD68698.1 - 7.1e-96 320.8 0.0 1e-95 320.2 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 AJD68698.1 - 2.1e-12 47.2 0.0 3.7e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 S1 RNA binding domain PseudoU_synth_2 PF00849.22 AJD68699.1 - 3.3e-27 95.5 0.0 4.5e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AJD68699.1 - 9.5e-09 34.8 0.4 9.5e-09 34.8 0.4 1.8 2 0 0 2 2 2 1 S4 domain DUF3300 PF11737.8 AJD68700.1 - 1e-61 208.5 5.6 1.7e-61 207.7 5.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3300) Zip PF02535.22 AJD68701.1 - 1.5e-27 96.7 16.5 4.1e-19 69.0 6.1 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter TonB_C PF03544.14 AJD68702.1 - 4e-22 78.4 0.2 5.2e-22 78.1 0.2 1.2 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AJD68702.1 - 0.026 14.8 0.3 0.048 13.9 0.1 1.6 1 1 0 1 1 1 0 TonB C terminal Pterin_4a PF01329.19 AJD68703.1 - 3.8e-27 94.3 0.0 4.4e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase NifU PF01106.17 AJD68704.1 - 7.7e-20 70.8 0.3 1.4e-19 70.0 0.3 1.5 1 0 0 1 1 1 1 NifU-like domain Fe-S_biosyn PF01521.20 AJD68704.1 - 3.1e-05 24.1 0.0 5.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis BLUF PF04940.12 AJD68707.1 - 5.5e-25 87.3 0.0 6.9e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 Sensors of blue-light using FAD Methyltransf_3 PF01596.17 AJD68708.1 - 3.4e-22 78.7 0.0 1.2e-21 76.9 0.0 1.7 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 AJD68708.1 - 6.8e-14 52.8 0.8 1e-13 52.2 0.8 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD68708.1 - 3.5e-05 24.4 0.1 0.00013 22.6 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68708.1 - 0.00041 20.2 0.0 0.00056 19.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 AJD68708.1 - 0.0016 18.2 0.1 0.0045 16.8 0.1 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF1442 PF07279.11 AJD68708.1 - 0.008 15.5 0.2 0.0089 15.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1442) GCD14 PF08704.10 AJD68708.1 - 0.012 15.3 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Acyl-CoA_dh_1 PF00441.24 AJD68709.1 - 0.00015 22.0 1.2 0.00027 21.1 1.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF1845 PF08900.11 AJD68709.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) PIG-L PF02585.17 AJD68710.1 - 2.6e-26 92.8 0.6 3.4e-26 92.4 0.1 1.4 2 0 0 2 2 2 1 GlcNAc-PI de-N-acetylase NodS PF05401.11 AJD68711.1 - 1.2e-14 54.5 0.0 1.5e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_11 PF08241.12 AJD68711.1 - 8.1e-13 48.8 0.0 2.3e-12 47.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD68711.1 - 9.8e-12 45.4 0.0 1.8e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD68711.1 - 7.9e-10 39.4 0.0 1.2e-09 38.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD68711.1 - 5.8e-07 29.5 0.0 7.7e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68711.1 - 6.1e-07 29.4 0.0 8.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 AJD68711.1 - 4.4e-06 26.3 0.1 0.044 13.3 0.0 2.5 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain MTS PF05175.14 AJD68711.1 - 1.9e-05 24.3 0.0 3.1e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 AJD68711.1 - 0.0016 17.5 0.0 0.0023 17.0 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Glycos_transf_2 PF00535.26 AJD68712.1 - 3e-13 49.9 0.1 4.1e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD68712.1 - 7.8e-10 39.0 1.8 7.5e-09 35.8 1.8 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 AJD68712.1 - 0.0022 17.5 0.5 0.078 12.4 0.1 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 AJD68712.1 - 0.0038 17.2 0.3 0.0068 16.3 0.3 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 AJD68712.1 - 0.0098 16.4 0.0 0.019 15.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2997 PF11211.8 AJD68712.1 - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2997) Gluconate_2-dh3 PF13618.6 AJD68713.1 - 9.2e-08 32.4 0.2 2.9e-07 30.8 0.0 1.9 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 GMC_oxred_C PF05199.13 AJD68714.1 - 2.8e-24 86.3 0.3 4.3e-23 82.4 0.3 2.3 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 AJD68714.1 - 1.4e-15 57.5 0.6 3.3e-15 56.3 0.6 1.7 1 1 0 1 1 1 1 GMC oxidoreductase FAD_binding_3 PF01494.19 AJD68714.1 - 2.3e-06 27.1 3.1 0.0022 17.3 1.6 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 AJD68714.1 - 3.8e-06 26.3 0.2 0.0007 18.9 0.2 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD68714.1 - 3.6e-05 23.0 4.2 0.0003 20.0 2.3 2.2 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 AJD68714.1 - 0.0011 18.1 0.8 0.0022 17.1 0.8 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 AJD68714.1 - 0.0019 18.4 0.8 0.0019 18.4 0.8 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AJD68714.1 - 0.0023 17.6 11.0 0.034 13.7 10.9 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AJD68714.1 - 0.0055 15.5 3.2 0.38 9.4 2.4 2.2 2 0 0 2 2 2 2 HI0933-like protein Fer4_9 PF13187.6 AJD68714.1 - 0.068 13.4 2.5 0.17 12.1 2.5 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.27 AJD68714.1 - 0.071 13.7 0.2 1.9 9.1 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD68714.1 - 0.084 12.1 0.5 0.22 10.8 0.5 1.6 1 0 0 1 1 1 0 Thi4 family Mqo PF06039.15 AJD68714.1 - 0.2 10.2 0.2 0.38 9.2 0.0 1.5 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) ApbA PF02558.16 AJD68714.1 - 0.21 11.2 2.0 0.4 10.3 2.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 AJD68715.1 - 1.8e-51 175.0 0.3 5.4e-51 173.4 0.3 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD68715.1 - 1.4e-45 155.2 0.1 1.8e-45 154.8 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD68715.1 - 6.8e-05 22.8 0.1 0.00011 22.2 0.1 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD68715.1 - 0.0025 17.3 0.0 0.005 16.3 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HHH_5 PF14520.6 AJD68715.1 - 0.068 13.8 1.5 0.15 12.7 0.6 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain 3HCDH_N PF02737.18 AJD68715.1 - 0.093 12.6 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RE_NgoBV PF09564.10 AJD68715.1 - 0.14 11.6 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 NgoBV restriction endonuclease DUF3653 PF12375.8 AJD68716.1 - 1.3e-08 34.8 0.1 2.2e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 Phage protein HTH_31 PF13560.6 AJD68716.1 - 0.0054 17.0 0.9 0.12 12.7 0.1 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 AJD68716.1 - 0.035 14.3 0.1 0.062 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 AJD68716.1 - 0.079 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix MerR PF00376.23 AJD68716.1 - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein HicB PF05534.12 AJD68717.1 - 0.0005 19.9 0.1 0.00083 19.1 0.1 1.3 1 0 0 1 1 1 1 HicB family RPA_interact_N PF14766.6 AJD68718.1 - 0.011 15.4 2.0 0.018 14.7 2.0 1.4 1 0 0 1 1 1 0 Replication protein A interacting N-terminal rve PF00665.26 AJD68719.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD68719.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD68719.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD68720.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68720.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68720.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD68720.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD68720.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD68720.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD68720.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD68720.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68720.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD68720.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD68720.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD68720.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD68720.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD68720.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD68720.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD68720.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD68720.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD68720.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD68720.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD68720.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD68720.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein FAD_binding_3 PF01494.19 AJD68721.1 - 0.0094 15.2 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain SNARE_assoc PF09335.11 AJD68722.1 - 3e-10 40.6 1.5 3e-10 40.6 1.5 1.3 2 0 0 2 2 2 1 SNARE associated Golgi protein GFO_IDH_MocA_C PF02894.17 AJD68724.1 - 0.00066 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GSDH PF07995.11 AJD68725.1 - 1.4e-12 47.6 0.3 1.8e-11 43.9 0.3 2.4 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.21 AJD68725.1 - 0.00084 19.3 1.3 0.14 12.3 0.3 3.1 3 0 0 3 3 3 2 NHL repeat HTH_23 PF13384.6 AJD68725.1 - 0.18 11.6 0.0 0.41 10.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF2231 PF09990.9 AJD68726.1 - 0.028 14.9 3.2 0.028 14.9 3.2 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF2976 PF11190.8 AJD68726.1 - 0.79 9.6 6.8 0.62 9.9 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) SUR7 PF06687.12 AJD68726.1 - 3.1 7.4 12.1 2.6 7.6 4.5 2.1 1 1 1 2 2 2 0 SUR7/PalI family ThrE PF06738.12 AJD68726.1 - 4 6.7 13.3 2.7 7.3 11.7 1.5 1 1 1 2 2 2 0 Putative threonine/serine exporter Beta-lactamase PF00144.24 AJD68727.1 - 1.6e-63 215.0 2.0 2.3e-63 214.4 2.0 1.2 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 AJD68727.1 - 0.0013 18.4 0.1 0.35 10.4 0.1 2.5 2 1 0 2 2 2 2 Beta-lactamase enzyme family DUF3419 PF11899.8 AJD68727.1 - 0.13 11.5 0.1 0.23 10.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3419) LytTR PF04397.15 AJD68728.1 - 1.6e-21 76.3 0.0 2.3e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 LytTr DNA-binding domain Response_reg PF00072.24 AJD68728.1 - 6.6e-17 61.7 0.0 1.3e-16 60.8 0.0 1.5 2 0 0 2 2 2 1 Response regulator receiver domain His_kinase PF06580.13 AJD68729.1 - 9.1e-16 58.0 0.0 1.7e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 AJD68729.1 - 0.1 13.1 0.1 1 9.9 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peptidase_S8 PF00082.22 AJD68731.1 - 3.7e-38 131.5 9.1 3.7e-38 131.5 9.1 1.8 2 0 0 2 2 2 1 Subtilase family Autotransporter PF03797.19 AJD68731.1 - 6e-27 94.9 17.3 6e-27 94.9 17.3 3.1 3 0 0 3 3 3 1 Autotransporter beta-domain PATR PF12951.7 AJD68731.1 - 8.1e-11 41.8 9.4 8.1e-11 41.8 9.4 2.7 2 0 0 2 2 2 1 Passenger-associated-transport-repeat HlyD_D23 PF16576.5 AJD68732.1 - 3.8e-43 147.2 0.1 8.2e-43 146.1 0.1 1.6 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD68732.1 - 1.9e-19 70.3 0.1 5.2e-16 59.3 0.0 2.5 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD68732.1 - 7.6e-08 32.1 0.9 4.5e-07 29.6 0.1 2.7 2 1 0 2 2 2 1 Biotin-lipoyl like HlyD PF00529.20 AJD68732.1 - 0.0068 16.3 2.6 0.11 12.4 2.9 2.2 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Arm-DNA-bind_3 PF13356.6 AJD68732.1 - 4.2 7.8 5.2 13 6.3 2.1 2.7 2 1 1 3 3 3 0 Arm DNA-binding domain ACR_tran PF00873.19 AJD68733.1 - 1.8e-257 856.9 0.4 2.1e-257 856.7 0.4 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD68733.1 - 7.8e-11 41.5 36.0 8.1e-08 31.6 8.1 2.3 2 0 0 2 2 2 2 MMPL family OEP PF02321.18 AJD68734.1 - 1.5e-46 158.6 43.5 7.8e-26 91.0 11.9 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein Phage_tail_X PF05489.12 AJD68734.1 - 0.047 13.4 0.0 0.16 11.6 0.0 1.9 1 0 0 1 1 1 0 Phage Tail Protein X HATPase_c PF02518.26 AJD68735.1 - 3.5e-16 59.7 0.0 5.5e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD68735.1 - 1.1e-09 38.2 0.6 3.8e-09 36.5 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 AJD68735.1 - 2.3e-08 33.8 0.0 4.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 AJD68735.1 - 0.02 14.8 0.6 0.042 13.8 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain AI-2E_transport PF01594.16 AJD68735.1 - 0.027 13.6 4.5 0.04 13.1 4.5 1.2 1 0 0 1 1 1 0 AI-2E family transporter DUF2070 PF09843.9 AJD68735.1 - 0.93 7.7 7.9 1.2 7.4 7.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SLATT_1 PF18181.1 AJD68735.1 - 6.3 6.7 7.9 0.84 9.6 2.8 2.1 1 1 2 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 Response_reg PF00072.24 AJD68736.1 - 6.1e-22 77.9 0.0 9.6e-22 77.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD68736.1 - 5.8e-17 61.0 0.5 9.2e-17 60.4 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD68736.1 - 4.5e-05 23.0 0.3 7.7e-05 22.3 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 FleQ PF06490.11 AJD68736.1 - 0.0014 19.0 0.0 0.0024 18.2 0.0 1.3 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ Sigma70_r4 PF04545.16 AJD68736.1 - 0.012 15.1 0.4 0.012 15.1 0.4 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 AJD68736.1 - 2.8 7.8 8.1 2.7 7.9 0.0 3.3 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain PATR PF12951.7 AJD68737.1 - 1e-90 297.4 642.5 4.3e-09 36.3 4.3 46.1 50 3 2 52 52 52 26 Passenger-associated-transport-repeat ESPR PF13018.6 AJD68737.1 - 4.4e-06 26.4 0.9 1.1e-05 25.1 0.9 1.7 1 0 0 1 1 1 1 Extended Signal Peptide of Type V secretion system Herpes_pp38 PF04846.13 AJD68737.1 - 0.8 9.7 21.9 6.6 6.7 0.5 7.1 6 0 0 6 6 6 0 Herpesvirus pp38 phosphoprotein EAL PF00563.20 AJD68738.1 - 5.4e-58 196.3 0.0 9.8e-58 195.5 0.0 1.3 1 0 0 1 1 1 1 EAL domain GAF_3 PF13492.6 AJD68738.1 - 0.00029 21.2 0.4 0.00064 20.1 0.4 1.5 1 0 0 1 1 1 1 GAF domain GGDEF PF00990.21 AJD68738.1 - 0.00069 19.4 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain DUF1349 PF07081.11 AJD68739.1 - 3.3e-61 206.1 0.0 3.9e-61 205.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) GH43_C2 PF17851.1 AJD68739.1 - 0.0078 16.0 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain AstE_AspA PF04952.14 AJD68740.1 - 2.1e-07 30.3 0.0 3.3e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.8 AJD68740.1 - 4.9e-07 29.5 0.0 7.6e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2817) Peptidase_M14 PF00246.24 AJD68740.1 - 6.7e-06 26.1 0.0 1.6e-05 24.9 0.1 1.6 2 1 0 2 2 2 1 Zinc carboxypeptidase DUF892 PF05974.12 AJD68741.1 - 1.5e-49 168.1 4.0 1.7e-49 167.9 4.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 AJD68741.1 - 0.0022 17.9 0.6 0.0065 16.4 0.5 1.8 1 1 0 1 1 1 1 Ferritin-like domain LemA PF04011.12 AJD68741.1 - 0.091 12.6 0.2 0.15 11.9 0.2 1.3 1 0 0 1 1 1 0 LemA family SpecificRecomb PF10136.9 AJD68741.1 - 0.13 10.5 1.3 0.18 10.1 0.8 1.5 1 1 0 1 1 1 0 Site-specific recombinase KGG PF10685.9 AJD68742.1 - 3e-12 46.4 12.7 6.4e-06 26.3 1.8 3.4 2 1 1 3 3 3 3 Stress-induced bacterial acidophilic repeat motif TP_methylase PF00590.20 AJD68743.1 - 4.3e-24 85.7 0.3 9e-24 84.6 0.3 1.5 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ANTAR PF03861.14 AJD68743.1 - 3.2e-18 65.3 4.5 3.2e-18 65.3 4.5 2.0 2 0 0 2 2 2 1 ANTAR domain NAD_binding_7 PF13241.6 AJD68745.1 - 6.3e-26 90.8 0.1 1.6e-25 89.5 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding CysG_dimeriser PF10414.9 AJD68745.1 - 9.5e-16 57.3 4.5 9.5e-16 57.3 4.5 3.1 3 0 0 3 3 3 1 Sirohaem synthase dimerisation region TP_methylase PF00590.20 AJD68745.1 - 5.1e-11 42.9 1.3 5.1e-11 42.9 1.3 2.5 2 1 1 3 3 3 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Sirohm_synth_M PF14824.6 AJD68745.1 - 7.9e-09 34.8 0.2 2.7e-08 33.1 0.2 2.0 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Shikimate_DH PF01488.20 AJD68745.1 - 0.05 13.7 0.0 1.3 9.0 0.0 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF4131 PF13567.6 AJD68747.1 - 0.23 11.1 1.0 0.25 11.0 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MFS_3 PF05977.13 AJD68748.1 - 5.3e-180 599.3 38.4 6.6e-180 598.9 38.4 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 AJD68748.1 - 1.4e-33 116.3 76.7 9.4e-31 107.0 46.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AJD68748.1 - 0.019 14.3 44.8 0.029 13.7 44.8 1.3 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Amidohydro_3 PF07969.11 AJD68749.1 - 9.9e-110 368.2 0.7 1.3e-109 367.8 0.7 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 AJD68749.1 - 5.8e-06 25.9 0.0 0.00083 18.8 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family DoxX PF07681.12 AJD68750.1 - 1.2e-13 51.4 13.1 1.2e-13 51.4 13.1 1.5 2 0 0 2 2 2 1 DoxX DUF4229 PF14012.6 AJD68750.1 - 0.026 14.6 2.6 0.026 14.6 2.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) Isochorismatase PF00857.20 AJD68751.1 - 7.8e-29 101.1 0.0 1.6e-28 100.1 0.0 1.5 1 1 0 1 1 1 1 Isochorismatase family HTH_18 PF12833.7 AJD68752.1 - 6.6e-25 87.2 2.7 6.6e-25 87.2 2.7 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD68752.1 - 1.7e-18 66.2 0.1 7.5e-08 32.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_7 PF02796.15 AJD68752.1 - 0.12 12.4 0.4 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Y_Y_Y PF07495.13 AJD68753.1 - 6.4e-18 64.5 0.0 1e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 Y_Y_Y domain Reg_prop PF07494.11 AJD68753.1 - 8.2e-14 50.0 11.3 0.72 10.3 0.0 9.8 9 0 0 9 9 9 5 Two component regulator propeller HisKA_3 PF07730.13 AJD68753.1 - 2.3e-11 44.1 3.7 6.6e-11 42.6 3.7 1.9 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 AJD68753.1 - 4.4e-08 33.6 0.0 8.4e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD68753.1 - 0.0053 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain TEX13 PF15186.6 AJD68753.1 - 0.52 10.0 3.0 0.54 9.9 0.3 2.0 2 0 0 2 2 2 0 Testis-expressed sequence 13 protein family Response_reg PF00072.24 AJD68754.1 - 3.8e-30 104.3 0.1 6.2e-30 103.6 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD68754.1 - 5.1e-21 74.0 0.2 7.4e-21 73.5 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 AJD68754.1 - 2.4e-05 23.8 0.0 7.7e-05 22.1 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 AJD68754.1 - 0.00014 21.4 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2089 PF09862.9 AJD68754.1 - 0.1 12.7 0.0 0.23 11.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_24 PF13412.6 AJD68754.1 - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cache_3-Cache_2 PF17201.4 AJD68755.1 - 8.6e-41 140.1 1.4 4e-40 137.9 1.4 1.9 1 1 0 1 1 1 1 Cache 3/Cache 2 fusion domain sCache_3_3 PF17202.4 AJD68755.1 - 3.4e-30 104.6 0.2 7.4e-30 103.5 0.2 1.5 1 0 0 1 1 1 1 Single cache domain 3 sCache_3_2 PF17203.4 AJD68755.1 - 4.2e-10 39.9 0.1 7.2e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Single cache domain 3 HAMP PF00672.25 AJD68755.1 - 2e-08 34.5 0.3 5.7e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 HAMP domain dCache_1 PF02743.18 AJD68755.1 - 0.0034 17.2 0.1 0.0049 16.7 0.1 1.3 1 0 0 1 1 1 1 Cache domain DUF4307 PF14155.6 AJD68755.1 - 6.3 6.7 8.5 26 4.7 1.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) DEC-1_N PF04625.13 AJD68756.1 - 0.0013 17.9 1.8 0.0016 17.6 1.8 1.2 1 0 0 1 1 1 1 DEC-1 protein, N-terminal region HTH_1 PF00126.27 AJD68757.1 - 3e-23 81.5 2.3 6.8e-23 80.4 0.9 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AJD68757.1 - 3.3e-22 78.9 7.2 5.7e-22 78.1 7.2 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_30 PF13556.6 AJD68757.1 - 0.00062 19.5 0.5 0.0018 18.1 0.5 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR PF01047.22 AJD68757.1 - 0.016 15.1 0.0 0.26 11.2 0.0 2.6 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 AJD68757.1 - 0.021 14.4 0.2 0.085 12.4 0.3 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 AJD68757.1 - 0.026 14.7 1.8 0.076 13.2 0.4 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_8 PF02954.19 AJD68757.1 - 0.071 12.9 0.1 0.071 12.9 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_5 PF01022.20 AJD68757.1 - 0.12 12.3 0.1 0.3 11.0 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Proton_antipo_M PF00361.20 AJD68758.1 - 2e-40 138.8 17.5 2e-40 138.8 17.5 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 AJD68758.1 - 4.5e-09 36.3 0.1 1.3e-08 34.7 0.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YrvL PF14184.6 AJD68758.1 - 0.0022 18.1 0.1 0.0022 18.1 0.1 2.6 3 0 0 3 3 3 1 Regulatory protein YrvL Ceramidase PF05875.12 AJD68758.1 - 0.051 13.0 1.8 0.14 11.5 1.8 1.7 1 0 0 1 1 1 0 Ceramidase TM_helix PF05552.12 AJD68758.1 - 0.23 11.5 0.1 0.23 11.5 0.1 4.2 5 0 0 5 5 5 0 Conserved TM helix DUF2309 PF10070.9 AJD68759.1 - 1e-247 824.3 0.2 1.3e-247 823.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) TT_ORF2a PF08197.11 AJD68759.1 - 0.052 13.6 4.1 5.2 7.2 0.0 3.0 3 0 0 3 3 3 0 pORF2a truncated protein rve PF00665.26 AJD68760.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD68760.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD68760.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD68761.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68761.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68761.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD68761.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD68761.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD68761.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD68761.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD68761.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68761.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD68761.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD68761.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD68761.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD68761.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD68761.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD68761.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD68761.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD68761.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD68761.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD68761.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD68761.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD68761.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_31 PF13560.6 AJD68762.1 - 2.7e-13 50.0 0.3 3.8e-13 49.6 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD68762.1 - 3.1e-10 39.9 0.0 5.2e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AJD68762.1 - 7.9e-07 29.0 0.0 9.6e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 AJD68762.1 - 0.00015 22.1 0.0 0.00019 21.8 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 AJD68762.1 - 0.0051 16.6 0.1 0.0078 16.1 0.1 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain K-cyclin_vir_C PF09080.10 AJD68762.1 - 0.018 15.5 0.5 0.033 14.6 0.1 1.6 1 1 0 2 2 2 0 K cyclin, C terminal DUF736 PF05284.12 AJD68763.1 - 1.4e-19 69.8 0.0 1.6e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF736) RadC PF04002.15 AJD68764.1 - 7e-46 155.2 0.0 9.3e-46 154.8 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 AJD68764.1 - 1.2e-05 25.0 0.1 1.9e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain DUF575 PF04746.12 AJD68764.1 - 0.082 13.2 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF575) MIEAP PF16026.5 AJD68764.1 - 0.14 12.3 0.0 0.41 10.8 0.0 1.6 1 1 0 1 1 1 0 Mitochondria-eating protein Phage_AlpA PF05930.12 AJD68765.1 - 7.1e-21 73.8 0.6 7.1e-21 73.8 0.6 1.5 2 0 0 2 2 2 1 Prophage CP4-57 regulatory protein (AlpA) HTH_17 PF12728.7 AJD68765.1 - 0.00079 19.6 0.1 0.0019 18.3 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain AbiEii PF08843.11 AJD68767.1 - 3.4e-36 125.4 0.4 4.1e-36 125.1 0.4 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system AbiEi_3 PF11459.8 AJD68768.1 - 2.3e-35 121.6 0.0 3.9e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system AbiEi_3_N PF17194.4 AJD68768.1 - 3.1e-25 88.0 0.5 5.6e-25 87.2 0.5 1.4 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin N-terminal domain AbiEi_4 PF13338.6 AJD68768.1 - 0.011 15.9 0.3 0.026 14.7 0.3 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin Phage_integrase PF00589.22 AJD68769.1 - 2.6e-22 79.4 0.3 3e-21 76.0 0.0 2.1 2 0 0 2 2 2 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 AJD68769.1 - 1e-14 54.6 0.3 2.6e-14 53.3 0.3 1.7 1 0 0 1 1 1 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 AJD68769.1 - 1.3e-10 41.3 0.0 2.5e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF4131 PF13567.6 AJD68770.1 - 0.35 10.5 6.7 0.098 12.3 3.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TonB_dep_Rec PF00593.24 AJD68772.1 - 3.6e-65 221.7 23.4 5.9e-65 221.0 23.4 1.3 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD68772.1 - 3e-24 85.6 0.0 8.2e-24 84.3 0.0 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain TraG_N PF07916.11 AJD68773.1 - 3e-97 326.4 13.6 3.4e-97 326.2 13.6 1.0 1 0 0 1 1 1 1 TraG-like protein, N-terminal region DUF3742 PF12553.8 AJD68774.1 - 9.4e-33 112.9 2.5 1e-32 112.8 2.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3742) FA_desaturase PF00487.24 AJD68774.1 - 0.048 13.5 2.6 0.054 13.3 2.6 1.1 1 0 0 1 1 1 0 Fatty acid desaturase PIN PF01850.21 AJD68775.1 - 3.5e-17 63.1 0.0 4.1e-17 62.8 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 AJD68775.1 - 0.0082 16.9 0.5 0.011 16.4 0.5 1.3 1 0 0 1 1 1 1 PIN domain Cytidylate_kin2 PF13189.6 AJD68775.1 - 0.095 12.8 0.2 0.2 11.8 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase-like family MazE_antitoxin PF04014.18 AJD68776.1 - 4.4e-13 48.8 0.2 7.6e-13 48.1 0.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF4917 PF16263.5 AJD68777.1 - 1.8e-144 480.8 0.0 2e-144 480.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4917) Sigma70_r4_2 PF08281.12 AJD68779.1 - 2.4e-14 52.7 0.1 4.2e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD68779.1 - 2.3e-10 39.8 0.1 4.4e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD68779.1 - 3.8e-08 33.0 0.2 7.1e-08 32.1 0.2 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 AJD68779.1 - 8e-05 22.6 0.1 0.00016 21.6 0.0 1.5 2 0 0 2 2 2 1 ECF sigma factor GerE PF00196.19 AJD68779.1 - 0.00048 19.6 0.0 0.00079 18.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 AJD68779.1 - 0.0096 15.7 0.1 0.02 14.7 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 AJD68779.1 - 0.0099 15.4 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 AJD68779.1 - 0.012 15.9 0.7 0.047 14.0 0.1 2.3 2 1 1 3 3 3 0 Helix-turn-helix domain VWA_CoxE PF05762.14 AJD68779.1 - 0.016 14.6 0.7 3.7 6.9 0.1 2.2 1 1 1 2 2 2 0 VWA domain containing CoxE-like protein HTH_17 PF12728.7 AJD68779.1 - 0.022 15.0 0.1 0.87 9.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68779.1 - 0.027 13.9 0.4 0.085 12.3 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 AJD68779.1 - 0.051 14.0 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 AJD68779.1 - 0.075 12.9 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain KORA PF16509.5 AJD68779.1 - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Phage_terminase PF10668.9 AJD68779.1 - 0.11 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit FecR PF04773.13 AJD68780.1 - 1.3e-19 70.6 0.4 2.2e-19 69.9 0.4 1.4 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AJD68780.1 - 1.2e-06 28.3 17.5 4.5e-06 26.5 17.5 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) DUF4774 PF15999.5 AJD68780.1 - 5.7 6.8 10.7 6.8 6.6 1.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4774) TonB_dep_Rec PF00593.24 AJD68781.1 - 4.1e-42 145.6 34.6 2.8e-41 142.9 32.7 2.3 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD68781.1 - 9.5e-21 74.4 1.9 9.5e-21 74.4 1.9 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AJD68781.1 - 0.00013 21.7 0.0 0.00047 19.9 0.0 2.1 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain OMP_b-brl_3 PF14905.6 AJD68781.1 - 0.00052 19.1 0.0 0.001 18.1 0.0 1.4 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family DUF2593 PF10767.9 AJD68782.1 - 0.32 11.0 3.9 0.58 10.2 2.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2593) DUF2628 PF10947.8 AJD68784.1 - 3.4e-20 72.2 1.3 4.1e-20 71.9 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2628) TraI_2 PF07514.11 AJD68785.1 - 2.6e-128 427.6 0.5 4.7e-127 423.4 0.8 2.3 3 0 0 3 3 3 1 Putative helicase TraI_2_C PF07515.11 AJD68785.1 - 4.2e-45 152.6 0.0 2.4e-44 150.1 0.0 2.0 2 1 0 2 2 2 1 Putative conjugal transfer nickase/helicase TraI C-term HemolysinCabind PF00353.19 AJD68786.1 - 1.7e-86 283.5 314.9 2.5e-10 40.1 14.6 26.4 19 7 9 29 29 29 22 RTX calcium-binding nonapeptide repeat (4 copies) HCBP_related PF06594.11 AJD68786.1 - 3.9e-32 109.9 7.5 9.9e-09 35.0 0.0 7.9 8 0 0 8 8 8 5 Haemolysin-type calcium binding protein related domain He_PIG PF05345.12 AJD68786.1 - 6.9e-22 77.4 15.8 3.4e-10 39.9 1.2 5.1 5 0 0 5 5 5 3 Putative Ig domain MG2 PF01835.19 AJD68786.1 - 0.068 13.6 0.1 0.21 12.1 0.1 1.9 1 0 0 1 1 1 0 MG2 domain Gmad2 PF10648.9 AJD68786.1 - 1.2 9.5 8.0 0.51 10.6 0.1 3.9 3 1 0 3 3 3 0 Immunoglobulin-like domain of bacterial spore germination HemolysinCabind PF00353.19 AJD68787.1 - 1.5e-51 171.9 173.3 1.8e-09 37.4 9.9 12.1 8 4 5 13 13 13 12 RTX calcium-binding nonapeptide repeat (4 copies) Lipase_3 PF01764.25 AJD68787.1 - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) PCuAC PF04314.13 AJD68787.1 - 0.06 13.1 0.2 0.26 11.1 0.0 2.1 2 0 0 2 2 2 0 Copper chaperone PCu(A)C UPF0227 PF05728.12 AJD68787.1 - 0.074 13.0 0.0 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) CSS-motif PF12792.7 AJD68787.1 - 0.088 12.3 0.1 0.37 10.3 0.0 2.0 2 0 0 2 2 2 0 CSS motif domain associated with EAL TIP49 PF06068.13 AJD68787.1 - 0.13 11.5 0.1 0.25 10.5 0.1 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain HlyD_3 PF13437.6 AJD68790.1 - 1.2e-18 67.8 1.5 2.2e-15 57.2 0.5 2.7 3 0 0 3 3 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 AJD68790.1 - 4e-13 49.1 6.4 9.7e-09 34.7 3.2 2.3 2 0 0 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD PF00529.20 AJD68790.1 - 2.7e-08 33.6 0.1 4.6e-08 32.8 0.1 1.3 1 0 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl_2 PF13533.6 AJD68790.1 - 1.1e-07 31.6 9.7 1.1e-06 28.4 0.0 3.3 4 0 0 4 4 4 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AJD68790.1 - 3.6e-05 23.5 0.2 0.014 15.2 0.0 2.6 2 0 0 2 2 2 1 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 AJD68790.1 - 0.011 15.5 0.0 0.44 10.3 0.0 2.4 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 AJD68790.1 - 0.017 15.1 0.1 6.8 6.7 0.0 2.4 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain OmpH PF03938.14 AJD68790.1 - 0.029 14.7 16.2 0.057 13.7 8.6 2.2 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) T_cell_tran_alt PF15128.6 AJD68790.1 - 0.14 11.9 0.5 0.34 10.7 0.5 1.5 1 0 0 1 1 1 0 T-cell leukemia translocation-altered DUF4407 PF14362.6 AJD68790.1 - 3.3 7.0 15.2 6.3 6.1 15.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FTA4 PF13093.6 AJD68790.1 - 5 7.0 14.0 0.26 11.1 0.4 2.3 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Troponin PF00992.20 AJD68790.1 - 5.5 7.3 12.1 4.5 7.6 0.1 2.3 2 0 0 2 2 2 0 Troponin ABC_membrane PF00664.23 AJD68791.1 - 4.1e-53 180.8 8.9 5.4e-53 180.4 8.9 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 AJD68791.1 - 3.8e-36 124.6 0.0 6.2e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Peptidase_C39 PF03412.15 AJD68791.1 - 1.4e-06 28.2 0.0 0.00089 19.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase C39 family SMC_N PF02463.19 AJD68791.1 - 7.9e-05 22.2 0.1 0.0079 15.7 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AJD68791.1 - 0.0012 18.5 0.0 0.0029 17.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD68791.1 - 0.0029 18.0 0.1 0.0085 16.5 0.1 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AJD68791.1 - 0.008 16.5 0.1 0.038 14.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AJD68791.1 - 0.019 13.8 0.1 0.59 8.9 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 AJD68791.1 - 0.033 13.9 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD68791.1 - 0.042 14.4 0.0 0.12 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 AJD68791.1 - 0.11 12.3 0.0 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF87 PF01935.17 AJD68791.1 - 0.12 12.5 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain NB-ARC PF00931.22 AJD68791.1 - 0.19 10.8 0.1 0.35 10.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 AJD68791.1 - 0.2 11.4 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Phage_AlpA PF05930.12 AJD68792.1 - 6.3e-25 86.7 0.4 7.4e-25 86.5 0.4 1.1 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) HTH_17 PF12728.7 AJD68792.1 - 0.11 12.7 0.8 0.22 11.7 0.4 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain AAA_31 PF13614.6 AJD68793.1 - 1.4e-26 93.5 0.0 2.1e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AJD68793.1 - 2.3e-16 60.0 0.0 3.6e-16 59.4 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 AJD68793.1 - 1.4e-09 37.8 0.3 7.6e-09 35.4 0.3 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 AJD68793.1 - 3.7e-09 36.4 0.1 7.2e-09 35.4 0.0 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 AJD68793.1 - 2.4e-07 30.3 0.0 0.00088 18.6 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 AJD68793.1 - 1.9e-06 27.3 0.0 2.7e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.11 AJD68793.1 - 6.8e-05 22.3 0.1 0.007 15.7 0.0 2.3 2 0 0 2 2 2 1 VirC1 protein Fer4_NifH PF00142.18 AJD68793.1 - 0.0057 16.1 0.0 0.0093 15.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 AJD68793.1 - 0.0062 16.2 0.1 0.16 11.6 0.1 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Bclx_interact PF08945.10 AJD68793.1 - 0.018 14.8 0.1 0.05 13.4 0.1 1.7 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain CLP1_P PF16575.5 AJD68793.1 - 0.15 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ParBc PF02195.18 AJD68795.1 - 0.00083 19.6 0.0 0.0018 18.5 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain Arg_repressor PF01316.21 AJD68795.1 - 0.0097 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain DUF2857 PF11198.8 AJD68796.1 - 2.2e-58 196.9 1.8 2.5e-58 196.7 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2857) CPSase_L_D3 PF02787.19 AJD68796.1 - 0.13 12.6 0.0 0.23 11.8 0.0 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF1845 PF08900.11 AJD68798.1 - 1.9e-50 171.6 0.1 2.3e-50 171.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1845) DUF3158 PF11358.8 AJD68799.1 - 2.8e-46 157.1 0.1 3e-46 157.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3158) SSB PF00436.25 AJD68800.1 - 2.3e-11 43.7 0.0 2.7e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Single-strand binding protein family Topoisom_bac PF01131.20 AJD68801.1 - 1.3e-107 360.4 0.0 1.5e-107 360.2 0.0 1.0 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 AJD68801.1 - 4.6e-15 55.7 0.0 8.7e-15 54.8 0.0 1.5 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 AJD68801.1 - 1.4e-08 34.4 1.3 2.3e-08 33.7 1.3 1.4 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.6 AJD68801.1 - 0.0046 17.4 0.0 0.013 16.0 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 AJD68801.1 - 0.14 12.6 0.0 0.44 11.0 0.0 1.8 1 0 0 1 1 1 0 Toprim-like DNA_methylase PF00145.17 AJD68802.1 - 2.6e-40 138.8 0.0 4.4e-30 105.2 0.0 2.1 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase DZR PF12773.7 AJD68803.1 - 0.059 13.4 0.5 0.13 12.4 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon AAA_21 PF13304.6 AJD68804.1 - 1e-15 58.4 0.3 2e-13 50.9 0.4 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 AJD68804.1 - 2e-10 40.9 0.0 9e-09 35.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 AJD68804.1 - 0.009 16.5 0.1 8.5 6.9 0.0 2.7 3 0 0 3 3 3 2 ABC transporter DUF2813 PF11398.8 AJD68804.1 - 0.039 13.2 0.3 0.088 12.0 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) DUF413 PF04219.12 AJD68804.1 - 0.085 12.9 0.0 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF Pentapeptide_3 PF13576.6 AJD68807.1 - 0.047 13.8 0.1 0.085 13.0 0.1 1.3 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) TetR_C_10 PF16295.5 AJD68809.1 - 0.056 13.7 0.0 0.086 13.1 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF3085 PF11284.8 AJD68810.1 - 1.9e-31 108.2 0.1 2.3e-31 108.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3085) Phage_integrase PF00589.22 AJD68811.1 - 2e-19 70.0 0.0 1.4e-18 67.3 0.0 2.0 2 0 0 2 2 2 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 AJD68811.1 - 7.6e-18 64.7 0.2 1.3e-17 63.9 0.2 1.4 1 0 0 1 1 1 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 AJD68811.1 - 4e-09 36.6 0.0 1.1e-08 35.2 0.0 1.7 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF1016_N PF17761.1 AJD68812.1 - 3.8e-40 137.2 0.0 5.3e-40 136.8 0.0 1.2 1 0 0 1 1 1 1 DUF1016 N-terminal domain YhcG_C PF06250.11 AJD68812.1 - 4.1e-13 49.5 0.2 7.1e-13 48.7 0.2 1.4 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain HTH_Tnp_1 PF01527.20 AJD68813.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD68813.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD68813.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD68813.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD68813.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD68813.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD68813.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD68813.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD68813.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD68813.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD68813.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD68813.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD68813.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD68813.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD68813.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD68813.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD68813.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD68813.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD68813.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD68813.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD68813.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD68814.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD68814.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD68814.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain EamA PF00892.20 AJD68815.1 - 1.4e-18 67.4 36.6 3.8e-15 56.3 18.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family NEMP PF10225.9 AJD68815.1 - 3.9 7.1 9.7 0.053 13.2 1.2 2.1 2 1 1 3 3 3 0 NEMP family EamA PF00892.20 AJD68816.1 - 1.1e-12 48.3 36.6 3.5e-08 33.7 21.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family TetR_N PF00440.23 AJD68817.1 - 5.2e-14 51.8 0.1 9.1e-14 51.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_IclR PF09339.10 AJD68817.1 - 0.0013 18.5 0.1 0.0031 17.3 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain UPF0122 PF04297.14 AJD68817.1 - 0.041 14.1 0.0 0.62 10.3 0.0 2.4 2 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_10 PF04967.12 AJD68817.1 - 0.1 12.4 0.5 1.1 9.1 0.0 2.5 3 0 0 3 3 3 0 HTH DNA binding domain Flavodoxin_2 PF02525.17 AJD68818.1 - 6.3e-46 156.6 0.0 7.3e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 AJD68818.1 - 5.1e-15 55.5 0.0 8.9e-15 54.8 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase PDDEXK_1 PF12705.7 AJD68818.1 - 0.032 14.1 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily GST_C PF00043.25 AJD68819.1 - 5.6e-11 42.5 0.2 1.4e-10 41.2 0.2 1.8 2 1 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 AJD68819.1 - 2.2e-08 34.4 0.0 4e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD68819.1 - 2.7e-08 33.7 2.8 4.5e-08 33.0 0.4 2.3 2 1 1 3 3 3 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 AJD68819.1 - 1.1e-07 32.0 0.0 2.7e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AJD68819.1 - 2.5e-07 30.8 0.4 6.1e-07 29.6 0.4 1.7 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 AJD68819.1 - 5.9e-07 29.7 0.0 1.2e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 AJD68819.1 - 0.019 14.7 0.1 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain COG6 PF06419.11 AJD68819.1 - 0.027 12.7 0.1 0.03 12.6 0.1 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DUF1979 PF09322.10 AJD68819.1 - 0.18 11.7 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) Pro_racemase PF05544.11 AJD68820.1 - 1.3e-137 458.2 0.1 1.5e-137 458.0 0.1 1.0 1 0 0 1 1 1 1 Proline racemase YjgF_endoribonc PF14588.6 AJD68821.1 - 6.4e-31 107.5 0.1 9.6e-31 106.9 0.1 1.3 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease FMN_red PF03358.15 AJD68821.1 - 5.8e-11 42.4 0.3 1.9e-10 40.7 0.1 1.9 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Ribonuc_L-PSP PF01042.21 AJD68821.1 - 3e-10 40.1 0.2 8.9e-10 38.6 0.1 1.9 2 0 0 2 2 2 1 Endoribonuclease L-PSP Flavodoxin_5 PF12724.7 AJD68821.1 - 0.068 13.4 0.0 0.37 11.0 0.0 2.0 1 1 0 1 1 1 0 Flavodoxin domain adh_short_C2 PF13561.6 AJD68822.1 - 7.3e-13 48.6 0.0 8.6e-13 48.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD68822.1 - 8.9e-07 28.6 0.1 8.2e-06 25.4 0.1 2.0 1 1 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 AJD68822.1 - 0.0039 16.3 0.0 0.0049 16.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 AJD68822.1 - 0.005 16.3 0.1 0.0074 15.8 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 AJD68822.1 - 0.011 15.6 0.1 0.052 13.5 0.1 1.9 1 1 0 1 1 1 0 KR domain MFS_1 PF07690.16 AJD68823.1 - 3e-19 69.2 60.6 1.5e-16 60.3 49.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2109 PF09882.9 AJD68823.1 - 0.26 11.3 3.1 0.31 11.1 0.1 2.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2109) Sugar_tr PF00083.24 AJD68823.1 - 0.28 10.0 26.4 0.26 10.1 8.0 3.0 2 1 1 3 3 3 0 Sugar (and other) transporter HTH_18 PF12833.7 AJD68824.1 - 8.1e-19 67.7 0.1 1.3e-18 67.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD68824.1 - 1.5e-08 34.5 0.0 0.0028 17.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 AJD68824.1 - 0.0011 18.9 0.0 0.002 18.0 0.0 1.6 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 AJD68824.1 - 0.0045 16.7 0.1 0.0074 16.0 0.1 1.4 1 0 0 1 1 1 1 Cupin domain DUF3040 PF11239.8 AJD68824.1 - 0.03 14.6 0.1 0.069 13.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3577 PF12101.8 AJD68825.1 - 4.2e-84 279.0 0.0 4.8e-44 149.4 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3577) DUF3275 PF11679.8 AJD68826.1 - 1.3e-87 293.1 0.0 1.5e-87 292.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3275) Ndufs5 PF10200.9 AJD68827.1 - 0.046 14.0 0.1 0.1 12.9 0.0 1.6 2 0 0 2 2 2 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa baeRF_family2 PF18844.1 AJD68831.1 - 0.059 13.4 0.3 0.059 13.4 0.3 2.3 3 0 0 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 2 ResIII PF04851.15 AJD68832.1 - 6.2e-07 29.6 0.0 0.00085 19.4 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Helicase_C PF00271.31 AJD68832.1 - 4.3e-06 27.0 0.0 8.1e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 AJD68832.1 - 1.4e-05 24.0 0.0 0.21 10.3 0.0 3.0 2 1 0 2 2 2 2 SNF2 family N-terminal domain DUF2075 PF09848.9 AJD68832.1 - 0.0076 15.5 0.0 0.82 8.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 AJD68832.1 - 0.02 14.6 1.5 0.037 13.7 0.1 2.1 3 0 0 3 3 3 0 AAA domain TF_Zn_Ribbon PF08271.12 AJD68832.1 - 0.032 13.7 0.5 0.068 12.7 0.5 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DEAD PF00270.29 AJD68832.1 - 0.048 13.4 0.0 3 7.6 0.0 2.9 3 0 0 3 3 3 0 DEAD/DEAH box helicase HHH_5 PF14520.6 AJD68832.1 - 0.12 13.0 0.1 1.2 9.8 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain SKI PF01202.22 AJD68832.1 - 0.16 12.1 1.5 3.3 7.8 0.3 2.6 2 0 0 2 2 2 0 Shikimate kinase Dynein_AAA_lid PF17852.1 AJD68834.1 - 0.18 11.9 0.0 0.3 11.2 0.0 1.4 1 1 0 1 1 1 0 Dynein heavy chain AAA lid domain DUF1629 PF07791.11 AJD68835.1 - 6.9e-51 171.5 0.0 9.5e-51 171.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) AHH PF14412.6 AJD68836.1 - 0.00012 22.1 0.0 0.00012 22.1 0.0 2.5 3 0 0 3 3 3 1 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF1188 PF06690.11 AJD68838.1 - 0.014 14.9 0.1 0.029 13.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1188) Prominin PF05478.11 AJD68838.1 - 0.026 12.5 1.2 0.034 12.1 1.2 1.1 1 0 0 1 1 1 0 Prominin HpaB_N PF11794.8 AJD68838.1 - 0.044 13.4 1.2 0.062 13.0 1.2 1.2 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Exonuc_VII_L PF02601.15 AJD68838.1 - 0.073 12.6 9.8 0.1 12.2 9.8 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit RmuC PF02646.16 AJD68838.1 - 0.13 11.3 7.3 0.27 10.3 0.5 2.2 1 1 1 2 2 2 0 RmuC family LMBR1 PF04791.16 AJD68838.1 - 0.18 10.7 1.2 0.23 10.3 1.2 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein AAA_13 PF13166.6 AJD68838.1 - 0.25 9.9 3.1 0.3 9.7 3.1 1.1 1 0 0 1 1 1 0 AAA domain Syntaxin_2 PF14523.6 AJD68838.1 - 0.69 10.3 9.0 1.3 9.4 9.0 1.4 1 0 0 1 1 1 0 Syntaxin-like protein UPF0449 PF15136.6 AJD68838.1 - 0.81 10.2 5.6 6.9 7.2 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 Tropomyosin_1 PF12718.7 AJD68838.1 - 0.98 9.6 9.9 0.68 10.1 7.3 1.9 2 1 0 2 2 1 0 Tropomyosin like DUF4259 PF14078.6 AJD68838.1 - 1 10.1 4.8 0.68 10.7 1.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4259) MCU PF04678.13 AJD68838.1 - 2.7 8.1 11.6 2.8 8.0 3.6 2.4 1 1 1 2 2 2 0 Mitochondrial calcium uniporter TPR_MLP1_2 PF07926.12 AJD68838.1 - 4 7.5 22.3 75 3.4 0.1 3.0 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.12 AJD68838.1 - 4.3 7.4 10.4 18 5.4 10.5 1.9 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.6 AJD68838.1 - 4.4 6.6 15.2 9.3 5.5 15.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) EMP24_GP25L PF01105.24 AJD68838.1 - 5 7.0 5.3 23 4.9 5.3 2.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF5344 PF17279.2 AJD68838.1 - 5.2 7.7 9.8 7.9 7.1 1.4 2.5 1 1 1 2 2 2 0 Family of unknown function (DUF5344) Fib_alpha PF08702.10 AJD68838.1 - 8.7 6.5 9.0 8.7 6.5 3.5 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Ninjurin PF04923.12 AJD68839.1 - 0.12 12.4 0.1 0.2 11.6 0.1 1.3 1 0 0 1 1 1 0 Ninjurin GIY-YIG PF01541.24 AJD68841.1 - 0.077 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 GIY-YIG catalytic domain LPAM_1 PF08139.12 AJD68842.1 - 9.7 6.9 8.5 1.1 9.8 2.4 2.2 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Sirohm_synth_M PF14824.6 AJD68843.1 - 0.11 11.9 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central Mobilization_B PF17511.2 AJD68844.1 - 0.012 16.0 0.3 0.036 14.4 0.0 1.8 2 0 0 2 2 2 0 Mobilization protein B SLT PF01464.20 AJD68845.1 - 8.7e-07 28.6 0.0 2.4e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 AJD68845.1 - 0.055 14.0 0.0 0.069 13.7 0.0 1.4 1 1 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DUF2859 PF11072.8 AJD68846.1 - 3.9e-51 172.7 0.0 4.7e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2859) DUF2384 PF09722.10 AJD68846.1 - 0.014 15.4 0.1 0.03 14.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) TraG-D_C PF12696.7 AJD68848.1 - 7.4e-10 38.9 0.0 1.2e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 AJD68848.1 - 1.2e-08 34.3 0.1 0.0017 17.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 AJD68848.1 - 0.013 15.6 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain TniB PF05621.11 AJD68848.1 - 0.17 11.3 0.0 0.38 10.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial TniB protein AAA_22 PF13401.6 AJD68848.1 - 0.19 12.0 0.0 0.42 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD68848.1 - 0.22 11.9 0.5 0.89 9.9 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain DUF4400 PF14348.6 AJD68849.1 - 2.4e-71 239.5 5.5 3.2e-71 239.1 5.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4400) DUF3732 PF12532.8 AJD68850.1 - 6.7e-50 169.3 0.1 6.3e-49 166.1 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF3732) AAA_23 PF13476.6 AJD68850.1 - 7.3e-08 33.1 5.8 1.3e-07 32.3 0.1 2.3 2 0 0 2 2 2 1 AAA domain Rab5-bind PF09311.11 AJD68850.1 - 0.0036 16.8 0.9 0.0036 16.8 0.9 1.7 2 0 0 2 2 2 1 Rabaptin-like protein AAA_29 PF13555.6 AJD68850.1 - 0.0038 17.0 0.1 0.0082 15.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 AJD68850.1 - 0.016 14.7 0.0 0.039 13.4 0.0 1.6 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Seryl_tRNA_N PF02403.22 AJD68850.1 - 0.14 12.4 4.3 4.5 7.5 0.0 3.6 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Macoilin PF09726.9 AJD68850.1 - 0.15 10.6 2.8 0.24 9.9 2.8 1.2 1 0 0 1 1 1 0 Macoilin family HSCB_C PF07743.13 AJD68850.1 - 0.67 10.5 0.1 0.67 10.5 0.1 3.0 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain HIP1_clath_bdg PF16515.5 AJD68850.1 - 2.1 9.0 8.5 48 4.7 2.9 3.3 3 0 0 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 CorA PF01544.18 AJD68850.1 - 3 7.1 11.8 0.51 9.6 0.4 2.8 3 0 0 3 3 3 0 CorA-like Mg2+ transporter protein UvrD-helicase PF00580.21 AJD68854.1 - 1.2e-30 107.1 0.0 1.3e-15 57.8 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 AJD68854.1 - 8.2e-19 68.4 0.0 3.6e-18 66.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 AJD68854.1 - 1.1e-14 54.6 0.0 2e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 AJD68854.1 - 4.4e-10 39.2 0.0 1.2e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AJD68854.1 - 3.5e-05 23.6 0.2 0.0037 17.0 0.1 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 AJD68854.1 - 0.01 15.6 1.4 16 5.1 0.0 3.8 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 AJD68854.1 - 0.062 12.9 0.0 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2228 PF10228.9 AJD68854.1 - 0.083 12.6 0.1 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2228) DUF3638 PF12340.8 AJD68854.1 - 0.19 11.0 0.0 0.55 9.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3638) DUF1936 PF09151.10 AJD68854.1 - 2.8 7.9 5.7 0.26 11.2 0.9 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) MbtH PF03621.13 AJD68857.1 - 0.004 16.6 7.5 8.1 6.0 0.1 4.2 4 0 0 4 4 4 4 MbtH-like protein NPCBM_assoc PF10633.9 AJD68857.1 - 3.7 7.9 5.0 69 3.8 0.0 3.8 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Plasmid_RAQPRD PF09686.10 AJD68859.1 - 6.5e-24 83.9 0.7 6.5e-24 83.9 0.7 1.6 2 0 0 2 2 2 1 Plasmid protein of unknown function (Plasmid_RAQPRD) DUF3262 PF11660.8 AJD68860.1 - 2.7e-23 82.1 10.3 2.9e-23 82.0 10.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3262) TetR_C_21 PF17926.1 AJD68860.1 - 0.026 14.7 0.1 0.029 14.5 0.1 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF2542 PF10808.8 AJD68860.1 - 1.4 9.5 5.7 0.38 11.3 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2542) DUF2976 PF11190.8 AJD68861.1 - 9.9e-33 111.8 0.6 1.3e-32 111.4 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2976) DUF3262 PF11660.8 AJD68861.1 - 0.25 11.8 3.8 0.37 11.2 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) FixQ PF05545.11 AJD68861.1 - 0.78 9.7 10.7 1.9 8.5 1.9 2.4 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF3487 PF11990.8 AJD68862.1 - 1.4e-41 141.0 1.5 1.6e-41 140.8 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3487) PrgI PF12666.7 AJD68862.1 - 0.075 13.8 0.1 0.11 13.3 0.1 1.2 1 0 0 1 1 1 0 PrgI family protein DUF1616 PF07760.11 AJD68862.1 - 0.21 10.9 0.2 0.26 10.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF2895 PF11444.8 AJD68863.1 - 2.3e-92 307.8 0.0 2.6e-92 307.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2895) CCT PF06203.14 AJD68863.1 - 0.19 11.8 0.3 0.4 10.8 0.3 1.5 1 0 0 1 1 1 0 CCT motif DUF3438 PF11920.8 AJD68864.1 - 9.8e-120 399.1 0.0 1.2e-119 398.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3438) DUF2353 PF09789.9 AJD68865.1 - 0.0072 15.7 2.9 0.01 15.2 2.9 1.1 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) YabA PF06156.13 AJD68865.1 - 0.016 15.8 0.9 0.03 15.0 0.9 1.4 1 0 0 1 1 1 0 Initiation control protein YabA TrbI PF03743.14 AJD68865.1 - 0.034 14.0 5.0 0.13 12.1 5.0 2.1 1 1 0 1 1 1 0 Bacterial conjugation TrbI-like protein CENP-F_leu_zip PF10473.9 AJD68865.1 - 0.045 13.8 2.4 0.072 13.1 2.4 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Macoilin PF09726.9 AJD68865.1 - 0.16 10.5 3.1 0.22 10.1 3.1 1.0 1 0 0 1 1 1 0 Macoilin family ZapB PF06005.12 AJD68865.1 - 1 9.9 10.4 12 6.5 10.4 2.1 1 1 0 1 1 1 0 Cell division protein ZapB Cep57_CLD_2 PF14197.6 AJD68865.1 - 1.3 9.1 6.4 2.5 8.3 4.6 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF2630 PF10944.8 AJD68865.1 - 3.5 8.2 8.7 2.4 8.7 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2630) TraC_F_IV PF11130.8 AJD68867.1 - 6.7e-70 235.4 1.2 3.7e-69 233.0 0.1 2.4 2 1 0 2 2 2 1 F pilus assembly Type-IV secretion system for plasmid transfer FtsK_SpoIIIE PF01580.18 AJD68867.1 - 0.00079 18.9 0.0 0.0045 16.4 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 AJD68867.1 - 0.0017 18.6 0.0 0.006 16.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 AJD68867.1 - 0.0056 15.6 0.0 0.028 13.3 0.0 2.0 3 0 0 3 3 3 1 AAA-like domain TrwB_AAD_bind PF10412.9 AJD68867.1 - 0.0082 15.1 0.0 0.025 13.5 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 AJD68867.1 - 0.011 14.8 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 AJD68867.1 - 0.03 13.9 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 AJD68867.1 - 0.03 14.2 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF87 PF01935.17 AJD68867.1 - 0.034 14.2 0.0 0.095 12.8 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AIG1 PF04548.16 AJD68867.1 - 0.05 12.9 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 AIG1 family EccE PF11203.8 AJD68867.1 - 0.059 13.7 1.6 0.3 11.4 0.6 2.7 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE AAA_16 PF13191.6 AJD68867.1 - 0.062 13.7 0.1 0.33 11.3 0.1 2.3 1 1 0 1 1 1 0 AAA ATPase domain DUF4913 PF16259.5 AJD68867.1 - 0.091 12.8 0.1 0.34 11.0 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4913) Pox_A32 PF04665.12 AJD68867.1 - 0.21 11.0 0.0 1.3 8.4 0.0 1.9 2 0 0 2 2 2 0 Poxvirus A32 protein Thioredoxin_4 PF13462.6 AJD68868.1 - 7.7e-15 55.4 0.0 1e-14 55.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 AJD68868.1 - 3.5e-10 40.0 0.0 5e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 AJD68868.1 - 6.9e-06 26.5 0.0 1e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain LysR_substrate PF03466.20 AJD68869.1 - 9.3e-36 123.2 6.5 1.3e-35 122.7 6.5 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD68869.1 - 4.2e-15 55.4 0.0 1.1e-14 54.1 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.22 AJD68869.1 - 0.059 13.3 0.0 0.2 11.6 0.0 1.9 2 0 0 2 2 2 0 MarR family NAD_binding_2 PF03446.15 AJD68870.1 - 1.1e-33 116.7 1.5 1.6e-33 116.1 1.5 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AJD68870.1 - 2.5e-32 111.7 0.6 2.5e-32 111.7 0.6 2.3 2 1 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 AJD68870.1 - 1.2e-09 37.8 0.3 6.6e-09 35.4 0.3 2.0 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AJD68870.1 - 4e-08 33.7 1.0 2.1e-07 31.4 0.7 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 AJD68870.1 - 0.0016 18.7 0.4 0.0036 17.6 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain PDH PF02153.17 AJD68870.1 - 0.0022 17.1 0.3 0.0032 16.5 0.3 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NmrA PF05368.13 AJD68870.1 - 0.0031 17.1 0.7 0.005 16.4 0.7 1.4 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.18 AJD68870.1 - 0.0066 16.4 0.8 0.01 15.7 0.7 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 AJD68870.1 - 0.029 15.2 0.1 0.057 14.3 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 AJD68870.1 - 0.035 13.6 0.1 0.052 13.0 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family UDPG_MGDP_dh_N PF03721.14 AJD68870.1 - 0.12 12.0 0.4 1.2 8.6 0.0 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TctC PF03401.14 AJD68871.1 - 7.9e-70 235.0 0.3 9.2e-70 234.8 0.3 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 AJD68871.1 - 0.019 14.4 0.0 0.052 13.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 AA_synth PF06684.11 AJD68872.1 - 5.3e-68 228.0 1.2 6e-68 227.8 1.2 1.0 1 0 0 1 1 1 1 Amino acid synthesis RadC PF04002.15 AJD68874.1 - 2.7e-41 140.4 0.0 3.5e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 AJD68874.1 - 0.014 15.1 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain DUF1525 PF07511.11 AJD68875.1 - 1.6e-36 124.9 1.1 1.9e-36 124.7 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.6 AJD68875.1 - 0.025 14.6 0.0 0.039 14.0 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain TraU PF06834.11 AJD68876.1 - 1.2e-69 234.9 1.8 1.5e-69 234.6 1.8 1.0 1 0 0 1 1 1 1 TraU protein PAPS_reduct PF01507.19 AJD68878.1 - 6.5e-26 91.4 0.0 1.6e-25 90.1 0.0 1.6 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 AJD68878.1 - 0.051 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Phage_AlpA PF05930.12 AJD68880.1 - 4.4e-16 58.4 0.1 5.6e-16 58.1 0.1 1.1 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) HTH_17 PF12728.7 AJD68880.1 - 0.075 13.2 0.1 0.15 12.3 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_integrase PF00589.22 AJD68881.1 - 8.6e-23 81.0 0.1 1.9e-22 79.9 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 AJD68881.1 - 7.9e-18 64.6 0.4 2.3e-17 63.1 0.4 1.8 1 0 0 1 1 1 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 AJD68881.1 - 1.4e-05 25.2 0.1 6.8e-05 23.1 0.0 2.2 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 AJD68881.1 - 0.016 15.7 0.0 0.041 14.4 0.0 1.7 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain GMP_synt_C PF00958.22 AJD68882.1 - 1.4e-42 143.6 0.0 4.2e-42 142.1 0.0 1.8 2 0 0 2 2 2 1 GMP synthase C terminal domain GATase PF00117.28 AJD68882.1 - 4.5e-39 134.2 0.0 6.8e-39 133.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AJD68882.1 - 8.8e-12 45.2 0.0 2.1e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.17 AJD68882.1 - 1.3e-11 44.2 0.1 1.5e-08 34.0 0.0 2.3 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 AJD68882.1 - 5.7e-05 22.1 0.1 0.00013 20.9 0.1 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 AJD68882.1 - 0.00025 20.8 0.2 0.00052 19.8 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.13 AJD68882.1 - 0.00095 18.7 0.1 0.14 11.6 0.0 2.7 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 AJD68882.1 - 0.0026 17.8 0.0 0.0042 17.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 AJD68882.1 - 0.015 15.1 0.0 0.07 12.9 0.0 2.0 2 0 0 2 2 2 0 PP-loop family Arginosuc_synth PF00764.19 AJD68882.1 - 0.13 11.5 0.1 0.19 11.0 0.1 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase IMPDH PF00478.25 AJD68883.1 - 2.1e-157 523.5 7.0 2.4e-157 523.3 7.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 AJD68883.1 - 2e-19 69.8 3.3 6.2e-11 42.6 0.1 2.9 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 AJD68883.1 - 2.6e-12 46.8 12.5 1.7e-07 30.9 9.3 2.3 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 AJD68883.1 - 9.6e-09 34.7 13.2 2.2e-07 30.3 13.3 2.5 2 1 0 2 2 2 1 FMN-dependent dehydrogenase DHO_dh PF01180.21 AJD68883.1 - 6.1e-05 22.4 6.3 0.0022 17.2 0.8 2.7 2 1 1 3 3 3 2 Dihydroorotate dehydrogenase His_biosynth PF00977.21 AJD68883.1 - 0.00023 20.7 5.5 0.016 14.7 0.1 3.0 2 1 1 3 3 3 2 Histidine biosynthesis protein NanE PF04131.14 AJD68883.1 - 0.00079 18.7 1.5 0.0037 16.5 1.2 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Glu_synthase PF01645.17 AJD68883.1 - 0.0009 18.5 5.7 0.0017 17.5 5.7 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.14 AJD68883.1 - 1.5 8.0 9.4 0.18 11.1 3.6 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG THF_DHG_CYH_C PF02882.19 AJD68884.1 - 5.1e-63 211.2 0.2 7.2e-63 210.7 0.2 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 AJD68884.1 - 5.8e-35 120.1 0.0 8.6e-35 119.5 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DUF1244 PF06844.11 AJD68885.1 - 2.1e-36 123.9 1.2 3e-36 123.4 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1244) FMN_red PF03358.15 AJD68885.1 - 0.059 13.1 0.1 0.081 12.7 0.1 1.4 1 1 0 1 1 1 0 NADPH-dependent FMN reductase Terminase_4 PF05119.12 AJD68885.1 - 0.061 13.8 0.2 0.082 13.4 0.2 1.2 1 0 0 1 1 1 0 Phage terminase, small subunit DUF2857 PF11198.8 AJD68885.1 - 0.076 12.8 2.2 0.21 11.4 2.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2857) Na_H_Exchanger PF00999.21 AJD68886.1 - 1.8e-67 227.8 46.2 2.4e-67 227.4 46.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 AJD68886.1 - 5.5e-21 75.0 0.2 1e-20 74.1 0.2 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 AJD68886.1 - 6.8e-05 23.3 0.2 0.00022 21.6 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding Asp-Al_Ex PF06826.12 AJD68886.1 - 0.00013 21.9 17.3 0.00013 21.9 17.3 2.6 2 0 0 2 2 2 2 Predicted Permease Membrane Region Sacchrp_dh_NADP PF03435.18 AJD68886.1 - 0.025 14.8 0.1 0.061 13.6 0.1 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 AJD68886.1 - 0.028 15.2 0.0 0.057 14.3 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NTP_transferase PF00483.23 AJD68887.1 - 3.1e-30 105.6 0.0 3.9e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 AJD68887.1 - 1.1e-08 35.6 0.1 1.7e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain PLAC9 PF15205.6 AJD68887.1 - 0.12 12.8 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 Placenta-specific protein 9 Polysacc_synt_2 PF02719.15 AJD68888.1 - 8.4e-112 373.1 0.0 1.3e-111 372.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 AJD68888.1 - 2.6e-19 69.7 0.0 2e-18 66.7 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AJD68888.1 - 4.9e-16 58.7 0.1 6.4e-15 55.0 0.1 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain CoA_binding_3 PF13727.6 AJD68888.1 - 1.7e-14 54.2 0.0 4.3e-14 52.9 0.0 1.7 1 0 0 1 1 1 1 CoA-binding domain 3Beta_HSD PF01073.19 AJD68888.1 - 1.1e-08 34.4 0.0 2.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 AJD68888.1 - 1.2e-08 34.8 0.0 3.4e-08 33.3 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase KR PF08659.10 AJD68888.1 - 1.6e-07 31.5 0.1 4.1e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 KR domain NAD_binding_4 PF07993.12 AJD68888.1 - 1.3e-05 24.5 0.2 9e-05 21.8 0.2 2.2 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 AJD68888.1 - 1.4e-05 25.1 1.1 3.3e-05 23.8 0.1 2.1 2 0 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 AJD68888.1 - 3.3e-05 23.4 0.0 7.6e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 AJD68888.1 - 0.0064 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.20 AJD68888.1 - 0.015 15.3 0.1 3.9 7.5 0.0 3.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 AJD68888.1 - 0.015 14.6 2.6 0.053 12.9 0.1 2.6 2 1 1 3 3 3 0 ThiF family Pyr_redox_2 PF07992.14 AJD68888.1 - 0.016 14.5 0.3 0.55 9.4 0.3 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 AJD68888.1 - 0.021 15.1 1.8 1 9.6 0.3 2.8 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 AJD68888.1 - 0.025 14.8 1.8 2.4 8.4 0.2 2.8 2 1 0 2 2 2 0 TrkA-N domain PglD_N PF17836.1 AJD68888.1 - 0.036 14.7 0.4 0.081 13.6 0.0 1.8 2 0 0 2 2 1 0 PglD N-terminal domain adh_short_C2 PF13561.6 AJD68888.1 - 0.095 12.2 0.0 0.24 10.9 0.0 1.7 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase AdoHcyase_NAD PF00670.21 AJD68888.1 - 0.14 12.2 0.1 7.2 6.7 0.0 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 AJD68888.1 - 0.24 11.8 1.9 2.6 8.5 0.0 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding Glycos_transf_4 PF00953.21 AJD68889.1 - 3.4e-23 82.4 11.9 3.4e-23 82.4 11.9 2.5 2 1 0 2 2 2 1 Glycosyl transferase family 4 TPR_2 PF07719.17 AJD68890.1 - 3.8e-13 48.5 14.1 0.08 13.1 0.1 7.1 7 0 0 7 7 7 4 Tetratricopeptide repeat Rubredoxin_2 PF18073.1 AJD68890.1 - 2.1e-10 40.1 7.8 3.3e-10 39.5 7.8 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain TPR_16 PF13432.6 AJD68890.1 - 5.9e-10 39.6 19.4 0.0016 19.1 0.5 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 AJD68890.1 - 7.2e-10 38.8 28.0 0.078 13.8 0.8 7.5 2 2 6 8 8 8 4 Tetratricopeptide repeat TPR_7 PF13176.6 AJD68890.1 - 3.5e-07 29.8 17.1 0.09 12.9 0.0 7.1 6 2 1 7 7 7 2 Tetratricopeptide repeat TPR_12 PF13424.6 AJD68890.1 - 3.8e-07 30.3 17.1 0.013 15.8 0.4 5.5 3 1 3 6 6 6 4 Tetratricopeptide repeat TPR_1 PF00515.28 AJD68890.1 - 7.4e-07 28.7 5.8 3.9 7.4 0.2 6.3 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_8 PF13181.6 AJD68890.1 - 3.5e-05 23.7 0.4 21 5.6 0.0 5.2 5 0 0 5 5 5 0 Tetratricopeptide repeat PPR PF01535.20 AJD68890.1 - 4.6e-05 23.4 0.1 8 7.0 0.0 5.0 5 0 0 5 5 5 0 PPR repeat TPR_19 PF14559.6 AJD68890.1 - 6.3e-05 23.4 14.5 0.29 11.7 0.8 4.3 2 2 4 6 6 6 4 Tetratricopeptide repeat HEAT_EZ PF13513.6 AJD68890.1 - 0.0026 18.2 2.8 0.2 12.2 0.1 3.6 3 0 0 3 3 3 1 HEAT-like repeat TPR_MalT PF17874.1 AJD68890.1 - 0.0027 17.2 2.8 0.75 9.1 0.2 2.9 2 1 1 3 3 3 2 MalT-like TPR region TPR_11 PF13414.6 AJD68890.1 - 0.004 16.8 1.4 2.1 8.1 0.0 4.4 4 0 0 4 4 4 1 TPR repeat RPN7 PF10602.9 AJD68890.1 - 0.0058 16.3 1.5 13 5.5 0.0 4.0 3 1 1 5 5 4 0 26S proteasome subunit RPN7 TPR_6 PF13174.6 AJD68890.1 - 0.032 14.9 11.2 17 6.3 0.4 6.7 6 1 1 7 7 7 0 Tetratricopeptide repeat Methyltransf_9 PF08003.11 AJD68890.1 - 0.032 13.2 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Zn_ribbon_SprT PF17283.2 AJD68890.1 - 0.039 13.8 3.6 0.77 9.7 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Flot PF15975.5 AJD68890.1 - 0.067 13.4 0.3 0.13 12.5 0.3 1.4 1 0 0 1 1 1 0 Flotillin zf_C2H2_ZHX PF18387.1 AJD68890.1 - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Zinc-fingers and homeoboxes C2H2 finger domain PPR_1 PF12854.7 AJD68890.1 - 0.14 11.9 0.4 59 3.5 0.0 3.8 4 0 0 4 4 4 0 PPR repeat HypA PF01155.19 AJD68890.1 - 0.25 11.4 0.4 0.86 9.6 0.4 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BTAD PF03704.17 AJD68890.1 - 0.37 11.2 10.0 0.77 10.2 1.6 2.9 1 1 0 2 2 2 0 Bacterial transcriptional activator domain TPR_9 PF13371.6 AJD68890.1 - 0.48 10.6 13.4 0.07 13.3 2.4 3.8 3 2 1 4 4 4 0 Tetratricopeptide repeat LapA_dom PF06305.11 AJD68891.1 - 5.9e-09 35.6 0.7 5.9e-09 35.6 0.7 2.1 1 1 1 2 2 2 1 Lipopolysaccharide assembly protein A domain MgtC PF02308.16 AJD68891.1 - 0.0049 17.2 2.0 0.0062 16.9 2.0 1.1 1 0 0 1 1 1 1 MgtC family DUF2157 PF09925.9 AJD68891.1 - 0.08 12.7 3.8 0.09 12.6 3.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) MctB PF11382.8 AJD68891.1 - 0.13 11.9 5.4 0.043 13.5 2.8 1.5 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB ETRAMP PF09716.10 AJD68891.1 - 0.64 10.1 9.1 4.6 7.4 0.4 2.3 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) YrhC PF14143.6 AJD68891.1 - 2.8 8.1 5.7 13 6.0 5.7 2.0 1 1 0 1 1 1 0 YrhC-like protein Bac_DNA_binding PF00216.21 AJD68892.1 - 1.1e-28 99.3 0.0 1.2e-28 99.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AJD68892.1 - 2.7e-08 33.9 0.0 3.2e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif CDC48_2 PF02933.17 AJD68892.1 - 0.025 14.4 0.0 0.05 13.4 0.0 1.6 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 TetR_C_30 PF17939.1 AJD68892.1 - 0.038 14.2 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PTS-HPr PF00381.19 AJD68892.1 - 0.11 12.8 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 PTS HPr component phosphorylation site HU-CCDC81_euk_2 PF18289.1 AJD68892.1 - 0.14 12.3 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 S1 PF00575.23 AJD68893.1 - 1.3e-97 320.3 34.8 1.4e-22 79.8 0.8 6.1 6 0 0 6 6 6 6 S1 RNA binding domain PCB_OB PF17092.5 AJD68893.1 - 1.5e-08 35.3 12.2 0.08 13.7 0.3 6.3 2 1 2 5 5 5 3 Penicillin-binding protein OB-like domain S1_2 PF13509.6 AJD68893.1 - 0.001 19.1 9.0 10 6.3 0.4 6.6 6 2 0 6 6 6 1 S1 domain CsrA PF02599.16 AJD68893.1 - 0.004 17.1 5.0 8.1 6.5 0.1 4.3 4 0 0 4 4 4 2 Global regulator protein family DUF1344 PF07076.11 AJD68893.1 - 0.029 14.3 3.8 0.056 13.4 0.1 3.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1344) DUF2110 PF09883.9 AJD68893.1 - 0.035 13.7 7.8 5.2 6.6 0.2 5.3 5 2 2 7 7 7 0 Uncharacterized protein conserved in archaea (DUF2110) Succ_CoA_lig PF13607.6 AJD68893.1 - 0.074 12.8 0.0 6.3 6.6 0.0 2.5 2 0 0 2 2 2 0 Succinyl-CoA ligase like flavodoxin domain ID PF18543.1 AJD68893.1 - 0.41 10.7 4.3 70 3.5 0.2 4.4 4 0 0 4 4 4 0 Intracellular delivery domain GbpA_2 PF18416.1 AJD68893.1 - 0.44 10.9 3.2 13 6.2 0.2 3.4 3 0 0 3 3 3 0 N-acetylglucosamine binding protein domain 2 Cytidylate_kin PF02224.18 AJD68894.1 - 1.9e-67 227.1 0.0 2.3e-67 226.8 0.0 1.0 1 0 0 1 1 1 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 AJD68894.1 - 5.1e-06 26.7 0.3 0.021 15.0 0.0 2.1 2 0 0 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 AJD68894.1 - 0.00088 19.8 0.0 0.037 14.6 0.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 AJD68894.1 - 0.0021 18.5 0.1 0.038 14.4 0.0 2.3 2 1 1 3 3 3 1 AAA domain ADK PF00406.22 AJD68894.1 - 0.0021 18.2 0.0 0.033 14.3 0.0 2.1 2 0 0 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 AJD68894.1 - 0.0034 17.5 0.1 0.017 15.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 AJD68894.1 - 0.015 15.4 0.1 0.042 14.0 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase Ribosomal_L36 PF00444.18 AJD68895.1 - 2.1e-17 63.0 6.7 2.4e-17 62.9 6.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L36 PAD_porph PF04371.15 AJD68898.1 - 1.3e-107 359.8 0.0 1.5e-107 359.6 0.0 1.0 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.22 AJD68899.1 - 7.9e-57 192.6 0.0 8.9e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Acetyltransf_4 PF13420.7 AJD68900.1 - 3.3e-27 95.5 0.0 4.1e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD68900.1 - 1.9e-13 50.7 0.3 2.5e-13 50.3 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 AJD68900.1 - 3e-09 37.7 0.1 3.9e-09 37.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD68900.1 - 4e-07 30.4 0.4 6.4e-07 29.7 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJD68900.1 - 6.3e-07 29.4 0.1 8.3e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD68900.1 - 0.00068 19.6 0.1 0.001 19.0 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltran PF12746.7 AJD68900.1 - 0.012 15.2 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_8 PF13523.6 AJD68900.1 - 0.014 15.0 0.1 0.064 12.9 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 AJD68900.1 - 0.037 14.2 0.7 0.057 13.6 0.7 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TraB PF01963.17 AJD68901.1 - 7e-25 88.4 0.1 9.9e-25 87.9 0.1 1.1 1 0 0 1 1 1 1 TraB family Cofac_haem_bdg PF04187.13 AJD68901.1 - 0.034 14.1 0.6 0.15 12.0 0.6 1.9 1 1 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN Exo_endo_phos PF03372.23 AJD68902.1 - 1.7e-19 70.3 3.6 2.5e-19 69.8 3.6 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 AJD68902.1 - 0.037 13.9 0.1 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 Endonuclease-reverse transcriptase DUF2733 PF10813.8 AJD68902.1 - 0.17 11.7 0.2 0.33 10.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2733) F5_F8_type_C PF00754.25 AJD68903.1 - 4e-15 56.1 0.1 1e-14 54.7 0.1 1.7 1 0 0 1 1 1 1 F5/8 type C domain GDE_C PF06202.14 AJD68903.1 - 6.3e-05 22.1 0.0 0.0001 21.4 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid6H PF17389.2 AJD68903.1 - 0.00011 21.6 0.1 0.00018 20.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain BPD_transp_1 PF00528.22 AJD68904.1 - 9.6e-22 77.6 13.1 9.6e-22 77.6 13.1 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 AJD68905.1 - 2.1e-18 66.7 18.5 2.1e-18 66.7 18.5 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ATE_C PF04377.15 AJD68905.1 - 0.2 12.3 0.1 0.53 10.9 0.0 1.7 2 0 0 2 2 2 0 Arginine-tRNA-protein transferase, C terminus SBP_bac_8 PF13416.6 AJD68906.1 - 9.5e-42 143.7 0.0 1.2e-41 143.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AJD68906.1 - 2.6e-37 129.5 3.2 3.7e-37 129.0 3.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AJD68906.1 - 4.8e-05 22.9 0.1 0.013 15.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AJD68906.1 - 0.0096 15.7 0.3 3.3 7.4 0.0 2.6 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein Glycoamylase PF10091.9 AJD68907.1 - 4.2e-92 307.7 2.9 6.4e-92 307.1 2.9 1.3 1 0 0 1 1 1 1 Putative glucoamylase TonB_dep_Rec PF00593.24 AJD68908.1 - 1.3e-17 64.9 52.1 1.3e-17 64.9 52.1 2.2 1 1 1 2 2 2 1 TonB dependent receptor CarboxypepD_reg PF13620.6 AJD68908.1 - 1e-10 41.7 8.7 1e-10 41.7 8.7 2.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 AJD68908.1 - 0.0074 16.3 1.2 0.019 14.9 1.2 1.7 1 0 0 1 1 1 1 CarboxypepD_reg-like domain DUF3568 PF12092.8 AJD68908.1 - 0.39 10.8 4.0 2.9 8.0 0.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3568) ChiW_Ig_like PF18683.1 AJD68908.1 - 2.2 8.6 6.1 0.65 10.3 2.8 1.9 2 0 0 2 2 2 0 Chitinase W immunoglobulin-like domain Peripla_BP_3 PF13377.6 AJD68909.1 - 4.4e-38 131.2 0.5 1.2e-37 129.8 0.5 1.7 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD68909.1 - 2.9e-22 79.4 0.0 3.7e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD68909.1 - 9.6e-15 54.1 0.3 1.7e-14 53.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD68909.1 - 2.5e-11 43.7 0.0 4.6e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain MarR_2 PF12802.7 AJD68909.1 - 0.0018 18.1 0.8 0.18 11.7 0.1 2.5 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AJD68909.1 - 0.021 14.2 0.1 0.055 12.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TetR_N PF00440.23 AJD68909.1 - 0.024 14.4 0.4 0.12 12.2 0.4 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_3 PF01381.22 AJD68909.1 - 0.051 13.7 0.0 0.098 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_7 PF02796.15 AJD68909.1 - 0.061 13.4 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_31 PF13560.6 AJD68909.1 - 0.085 13.2 0.4 0.085 13.2 0.4 3.4 3 1 1 4 4 4 0 Helix-turn-helix domain HTH_23 PF13384.6 AJD68909.1 - 0.13 12.1 0.2 1.4 8.8 0.1 2.3 1 1 1 2 2 2 0 Homeodomain-like domain HTH_DeoR PF08220.12 AJD68909.1 - 0.16 11.7 0.1 0.71 9.7 0.0 2.0 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain BolA PF01722.18 AJD68910.1 - 8.2e-28 96.5 0.0 9.5e-28 96.3 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein YCII PF03795.14 AJD68911.1 - 1.2e-26 92.9 0.0 1.4e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 YCII-related domain DUF1330 PF07045.11 AJD68911.1 - 0.023 15.0 0.1 0.033 14.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1330) SMC_ScpA PF02616.14 AJD68912.1 - 5.9e-29 101.7 1.2 1.2e-28 100.6 1.2 1.5 1 1 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 AJD68912.1 - 0.019 14.3 0.2 0.048 13.0 0.2 1.7 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein SMC_ScpB PF04079.16 AJD68913.1 - 6e-51 172.2 0.0 7.7e-51 171.9 0.0 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB PseudoU_synth_2 PF00849.22 AJD68914.1 - 6.1e-16 58.9 0.0 1e-15 58.1 0.0 1.3 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AJD68914.1 - 1.2e-09 37.7 0.3 2.9e-09 36.5 0.3 1.7 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 AJD68914.1 - 0.04 13.7 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 S4 domain AsmA_2 PF13502.6 AJD68915.1 - 0.00054 19.6 0.2 0.0015 18.1 0.2 1.9 1 1 0 1 1 1 1 AsmA-like C-terminal region DUF1134 PF06577.12 AJD68915.1 - 0.0019 18.0 0.9 0.0025 17.6 0.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1134) Glu_cyclase_2 PF05096.12 AJD68916.1 - 2e-92 309.2 0.0 2.3e-92 309.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine cyclotransferase SdiA-regulated PF06977.11 AJD68916.1 - 0.0038 16.5 0.0 0.011 15.0 0.0 1.8 2 0 0 2 2 2 1 SdiA-regulated CN_hydrolase PF00795.22 AJD68917.1 - 6.3e-28 97.8 0.0 1e-27 97.1 0.0 1.3 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Aminotran_1_2 PF00155.21 AJD68918.1 - 5e-59 200.3 0.0 6.2e-59 200.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 AJD68918.1 - 1.9e-08 34.0 0.3 3.4e-08 33.2 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 AJD68918.1 - 4.7e-08 32.4 0.0 6.7e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 AJD68918.1 - 2.8e-07 29.4 0.0 4.1e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ABC_tran PF00005.27 AJD68919.1 - 1.2e-24 87.4 0.0 1.5e-24 87.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD68919.1 - 8.2e-09 35.7 0.0 0.00035 20.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD68919.1 - 1.7e-05 24.4 0.0 0.00088 18.8 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AJD68919.1 - 0.0022 17.7 0.0 0.0044 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 AJD68919.1 - 0.0037 17.2 0.1 0.0067 16.4 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 AJD68919.1 - 0.0042 17.5 0.2 0.0064 16.9 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 AJD68919.1 - 0.0089 16.0 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 AJD68919.1 - 0.015 15.8 0.0 0.02 15.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AJD68919.1 - 0.016 14.9 0.1 0.018 14.8 0.1 1.3 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 AJD68919.1 - 0.019 13.8 0.0 0.023 13.5 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_27 PF13514.6 AJD68919.1 - 0.036 13.7 0.1 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 AJD68919.1 - 0.047 14.3 0.0 0.065 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AJD68919.1 - 0.049 13.5 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 AJD68919.1 - 0.06 13.6 0.0 0.071 13.4 0.0 1.3 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 AJD68919.1 - 0.081 10.4 0.0 0.1 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 AJD68919.1 - 0.094 11.3 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 AJD68919.1 - 0.097 11.9 0.2 0.14 11.4 0.2 1.1 1 0 0 1 1 1 0 Zeta toxin Pyridox_ox_2 PF12900.7 AJD68919.1 - 0.14 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase CcmB PF03379.13 AJD68920.1 - 1.1e-62 211.4 29.8 1.2e-62 211.2 29.8 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 AJD68920.1 - 3.1e-06 26.7 4.0 4.7e-06 26.2 4.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 AJD68920.1 - 0.0037 16.4 2.8 0.0037 16.4 2.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.11 AJD68920.1 - 0.011 15.5 0.7 0.017 14.9 0.7 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Cytochrom_C_asm PF01578.20 AJD68921.1 - 2.7e-29 102.5 18.5 3.9e-29 102.0 18.5 1.2 1 0 0 1 1 1 1 Cytochrome C assembly protein CcmD PF04995.14 AJD68922.1 - 1.2e-09 38.1 6.3 1.4e-09 37.8 6.3 1.1 1 0 0 1 1 1 1 Heme exporter protein D (CcmD) HemY_N PF07219.13 AJD68922.1 - 0.02 15.1 0.9 0.022 15.0 0.9 1.1 1 0 0 1 1 1 0 HemY protein N-terminus DUF3382 PF11862.8 AJD68922.1 - 0.024 14.9 0.1 0.026 14.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) DUF4281 PF14108.6 AJD68922.1 - 0.026 14.9 0.1 0.028 14.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4281) SSXRD PF09514.10 AJD68922.1 - 0.46 10.1 2.8 0.58 9.8 2.8 1.2 1 0 0 1 1 1 0 SSXRD motif CcmE PF03100.15 AJD68923.1 - 2.2e-42 144.1 0.0 2.5e-42 143.9 0.0 1.0 1 0 0 1 1 1 1 CcmE CcmF_C PF16327.5 AJD68924.1 - 1.3e-114 382.8 5.5 1.3e-114 382.8 5.5 3.0 3 1 1 4 4 4 1 Cytochrome c-type biogenesis protein CcmF C-terminal Cytochrom_C_asm PF01578.20 AJD68924.1 - 1.2e-50 172.3 20.4 1.2e-50 172.3 20.4 2.3 3 0 0 3 3 3 1 Cytochrome C assembly protein ResB PF05140.14 AJD68924.1 - 0.071 11.8 2.9 3.6 6.2 0.4 2.4 1 1 0 2 2 2 0 ResB-like family Redoxin PF08534.10 AJD68925.1 - 1.1e-16 60.9 0.0 1.3e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AJD68925.1 - 2.6e-13 50.0 0.0 3.3e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 AJD68925.1 - 0.013 15.5 0.0 0.18 11.8 0.0 2.0 1 1 0 2 2 2 0 Thioredoxin Thioredoxin_8 PF13905.6 AJD68925.1 - 0.02 15.2 0.0 0.038 14.3 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_2 PF13098.6 AJD68925.1 - 0.026 14.9 0.0 0.053 14.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain T7SS_ESX1_EccB PF05108.13 AJD68925.1 - 0.13 10.9 0.2 0.21 10.2 0.2 1.3 1 0 0 1 1 1 0 Type VII secretion system ESX-1, transport TM domain B CcmH PF03918.14 AJD68926.1 - 1.5e-47 160.5 0.0 1.6e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein TPR_19 PF14559.6 AJD68927.1 - 8.6e-10 39.0 8.9 0.00016 22.1 2.2 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 AJD68927.1 - 1.8e-09 36.9 0.2 2.4e-05 24.1 0.0 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_16 PF13432.6 AJD68927.1 - 8.3e-09 36.0 19.2 6.2e-06 26.8 2.8 3.4 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 AJD68927.1 - 2.1e-08 33.7 0.0 0.028 14.1 0.0 3.4 2 1 1 3 3 3 2 TPR repeat TPR_14 PF13428.6 AJD68927.1 - 4.9e-08 33.1 22.9 0.00024 21.7 2.9 5.5 3 2 3 6 6 6 3 Tetratricopeptide repeat TPR_1 PF00515.28 AJD68927.1 - 1.2e-05 24.9 0.0 0.0013 18.4 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 AJD68927.1 - 0.00036 20.8 0.9 0.14 12.5 0.1 2.9 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD68927.1 - 0.00065 19.7 0.0 0.013 15.7 0.0 2.9 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 AJD68927.1 - 0.0019 18.7 0.2 0.39 11.5 0.0 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 AJD68927.1 - 0.0027 17.8 14.4 0.0039 17.3 2.7 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 AJD68927.1 - 0.01 15.8 0.1 0.64 10.2 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 AJD68927.1 - 0.011 15.6 2.5 0.48 10.4 0.2 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_17 PF13431.6 AJD68927.1 - 0.011 16.1 0.0 0.63 10.5 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD68927.1 - 0.02 15.4 0.1 0.02 15.4 0.1 5.1 5 0 0 5 5 4 0 Tetratricopeptide repeat DUF4131 PF13567.6 AJD68927.1 - 0.021 14.5 1.5 0.047 13.3 1.4 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TOM20_plant PF06552.12 AJD68927.1 - 0.085 12.6 0.0 13 5.5 0.0 2.4 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 Abhydrolase_1 PF00561.20 AJD68928.1 - 1.7e-27 96.7 0.0 2.6e-27 96.1 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD68928.1 - 0.00023 21.8 7.7 0.00034 21.3 7.5 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD68928.1 - 0.004 16.4 0.0 0.0077 15.5 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 AJD68928.1 - 0.008 15.9 0.1 0.014 15.1 0.1 1.3 1 0 0 1 1 1 1 Putative esterase DUF3048 PF11258.8 AJD68928.1 - 0.021 14.9 0.1 0.057 13.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3048) N-terminal domain DUF1294 PF06961.13 AJD68929.1 - 8.7e-24 83.5 0.4 1.1e-22 79.9 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1294) CSD PF00313.22 AJD68929.1 - 2.1e-09 37.1 0.0 2.9e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain ABC_tran PF00005.27 AJD68930.1 - 5.1e-30 104.8 0.0 7.9e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AJD68930.1 - 8.1e-07 29.0 0.0 1.5e-06 28.1 0.0 1.4 1 1 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.6 AJD68930.1 - 7.3e-05 23.2 2.5 7.3e-05 23.2 2.5 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 AJD68930.1 - 0.0002 21.3 0.1 0.029 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AJD68930.1 - 0.0033 17.1 0.0 0.0081 15.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain CbiA PF01656.23 AJD68930.1 - 0.065 13.3 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.17 AJD68930.1 - 0.089 12.9 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain T2SSE PF00437.20 AJD68930.1 - 0.091 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 AJD68930.1 - 0.11 12.4 0.2 0.26 11.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.6 AJD68930.1 - 0.14 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 AJD68930.1 - 0.16 12.2 0.0 0.94 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 AJD68931.1 - 4.4e-25 88.8 0.0 7.1e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AJD68931.1 - 1.1e-17 64.6 0.2 1.5e-17 64.1 0.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 AJD68931.1 - 8.9e-11 42.1 1.7 1.9e-06 27.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AJD68931.1 - 0.00043 20.0 0.0 0.00092 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD68931.1 - 0.0055 17.1 3.2 0.023 15.1 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 AJD68931.1 - 0.0056 16.9 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD68931.1 - 0.0099 16.2 0.1 0.058 13.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD68931.1 - 0.027 14.6 0.1 0.091 12.9 0.0 2.0 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 AJD68931.1 - 0.034 14.1 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 AJD68931.1 - 0.038 13.4 0.0 3.1 7.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain OmdA PF13376.6 AJD68931.1 - 0.048 13.7 0.2 0.12 12.4 0.2 1.7 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated MMR_HSR1 PF01926.23 AJD68931.1 - 0.064 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 AJD68931.1 - 0.07 13.0 0.2 0.14 12.1 0.2 1.5 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 AJD68931.1 - 0.095 12.0 0.1 0.25 10.6 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family Dynamin_N PF00350.23 AJD68931.1 - 0.14 12.2 0.1 0.23 11.5 0.1 1.2 1 0 0 1 1 1 0 Dynamin family AAA_18 PF13238.6 AJD68931.1 - 0.17 12.4 0.0 0.36 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cyt_bd_oxida_I PF01654.17 AJD68932.1 - 7.4e-174 578.3 25.4 8.4e-174 578.1 25.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 AJD68933.1 - 3.5e-102 341.8 42.9 4.1e-102 341.6 42.9 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II YbgT_YccB PF08173.11 AJD68934.1 - 2.4e-14 53.1 8.3 2.6e-14 53.0 8.3 1.0 1 0 0 1 1 1 1 Membrane bound YbgT-like protein MFS_1 PF07690.16 AJD68935.1 - 3e-17 62.6 60.0 9.6e-17 60.9 49.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_S15 PF02129.18 AJD68936.1 - 5.2e-76 255.8 2.9 6.9e-76 255.4 2.9 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.10 AJD68936.1 - 9.2e-37 127.2 0.0 1.5e-36 126.5 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S9 PF00326.21 AJD68936.1 - 0.00016 21.2 0.7 0.0049 16.4 0.1 2.4 2 0 0 2 2 2 1 Prolyl oligopeptidase family Aldedh PF00171.22 AJD68937.1 - 1.8e-15 56.4 6.9 2.6e-13 49.3 3.9 2.2 1 1 1 2 2 2 2 Aldehyde dehydrogenase family DUF1487 PF07368.11 AJD68937.1 - 0.15 11.5 0.3 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) AA_kinase PF00696.28 AJD68938.1 - 4e-37 128.1 0.3 5.1e-37 127.7 0.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 AJD68938.1 - 1.7e-23 82.4 2.9 1.2e-22 79.6 0.1 3.3 4 0 0 4 4 4 1 PUA domain YCII PF03795.14 AJD68939.1 - 2.1e-07 31.2 0.0 2.4e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 YCII-related domain Lyase_1 PF00206.20 AJD68940.1 - 1.7e-44 152.5 0.0 2.3e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 AJD68940.1 - 0.00085 20.0 0.4 0.0031 18.2 0.4 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Semialdhyde_dh PF01118.24 AJD68941.1 - 5.7e-28 97.8 0.0 1.1e-27 96.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AJD68941.1 - 1.8e-05 25.2 0.2 3.3e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 AJD68941.1 - 0.00079 19.5 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 AJD68941.1 - 0.0099 16.7 0.1 0.019 15.8 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.6 AJD68941.1 - 0.02 14.8 0.6 0.04 13.8 0.6 1.5 1 0 0 1 1 1 0 NAD(P)H-binding vATP-synt_E PF01991.18 AJD68941.1 - 0.07 12.5 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Acetyltransf_3 PF13302.7 AJD68942.1 - 2.2e-15 57.6 0.0 2.7e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NAT PF04768.13 AJD68943.1 - 3.6e-54 183.0 0.0 8e-54 181.8 0.0 1.6 2 0 0 2 2 2 1 NAT, N-acetyltransferase, of N-acetylglutamate synthase AA_kinase PF00696.28 AJD68943.1 - 4.1e-31 108.4 0.1 6e-31 107.9 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family Acetyltransf_7 PF13508.7 AJD68943.1 - 0.032 14.7 0.0 0.072 13.5 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M20 PF01546.28 AJD68944.1 - 1.9e-17 63.7 0.3 2.5e-17 63.3 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AJD68944.1 - 5.4e-14 52.0 0.1 8.6e-14 51.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Acetyltransf_7 PF13508.7 AJD68945.1 - 6.6e-10 39.3 0.1 9e-10 38.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD68945.1 - 4e-08 33.5 0.1 4.6e-08 33.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AJD68945.1 - 1.2e-07 31.7 0.0 1.5e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD68945.1 - 3.6e-05 23.6 0.0 5.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 AJD68945.1 - 0.00081 19.5 0.0 0.0012 18.9 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 AJD68945.1 - 0.0069 16.5 0.1 0.0098 16.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Arginosuc_synth PF00764.19 AJD68946.1 - 7.2e-83 279.0 0.0 8.2e-83 278.8 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 AJD68946.1 - 6.3e-05 22.6 0.0 0.00033 20.2 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 AJD68946.1 - 0.043 12.6 0.0 0.073 11.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase WVELL PF14043.6 AJD68946.1 - 0.055 13.3 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 WVELL protein PAPS_reduct PF01507.19 AJD68946.1 - 0.067 13.2 0.0 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family OTCace_N PF02729.21 AJD68947.1 - 2.1e-36 125.2 0.0 2.9e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 AJD68947.1 - 5.4e-33 114.3 0.0 7.8e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain tRNA-synt_1e PF01406.19 AJD68949.1 - 4.5e-113 377.6 0.0 5.5e-113 377.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 AJD68949.1 - 1.1e-10 41.8 0.0 3.5e-10 40.2 0.0 1.9 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.11 AJD68949.1 - 2.6e-08 33.0 0.0 0.00027 19.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 AJD68949.1 - 1e-05 24.0 0.0 1.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 AJD68949.1 - 0.02 13.8 0.0 0.081 11.8 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (K) SufE PF02657.15 AJD68950.1 - 8.7e-43 145.1 0.0 1e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain MFS_3 PF05977.13 AJD68951.1 - 7.9e-33 113.6 28.5 9.5e-33 113.4 28.5 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 AJD68951.1 - 2.8e-30 105.5 43.1 4.6e-30 104.7 43.1 1.4 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2723 PF11028.8 AJD68951.1 - 0.037 13.9 1.1 0.17 11.8 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2723) zf-dskA_traR PF01258.17 AJD68952.1 - 7.1e-08 32.3 0.0 1.4e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger ApoLp-III PF07464.11 AJD68952.1 - 0.062 13.4 0.5 0.062 13.4 0.5 2.5 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) NAD_binding_9 PF13454.6 AJD68952.1 - 0.094 12.7 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding DUF948 PF06103.11 AJD68952.1 - 0.11 12.7 0.6 0.26 11.5 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Pex19 PF04614.12 AJD68952.1 - 0.13 12.0 0.2 0.13 12.0 0.2 2.6 2 1 0 2 2 2 0 Pex19 protein family YidD PF01809.18 AJD68953.1 - 7.4e-28 96.2 0.1 1.1e-27 95.7 0.1 1.3 1 0 0 1 1 1 1 Putative membrane protein insertion efficiency factor Amidohydro_1 PF01979.20 AJD68954.1 - 1.4e-19 70.7 0.0 2.2e-19 70.0 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 AJD68954.1 - 7.8e-13 48.7 0.2 2.3e-09 37.3 0.0 2.8 3 0 0 3 3 3 2 Amidohydrolase family Peptidase_M23 PF01551.22 AJD68955.1 - 1.3e-29 102.3 0.4 3.6e-29 100.8 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.6 AJD68955.1 - 0.01 15.7 0.5 0.01 15.7 0.5 2.0 2 0 0 2 2 2 0 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AJD68955.1 - 0.016 15.0 0.1 0.098 12.5 0.0 2.1 2 0 0 2 2 2 0 Biotin-requiring enzyme Rib PF08428.10 AJD68955.1 - 0.016 15.1 0.1 0.042 13.8 0.1 1.7 1 0 0 1 1 1 0 Rib/alpha-like repeat RnfC_N PF13375.6 AJD68955.1 - 0.085 12.8 0.4 0.43 10.6 0.1 2.1 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Glyoxalase_4 PF13669.6 AJD68956.1 - 1.8e-14 53.9 0.0 1.5e-13 51.0 0.0 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 AJD68956.1 - 1.7e-10 41.2 0.0 2.4e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 AJD68956.1 - 3.9e-08 33.6 0.1 6.4e-08 32.9 0.1 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 AJD68956.1 - 3.4e-06 27.8 0.0 5.5e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain AA_permease_2 PF13520.6 AJD68957.1 - 2.9e-38 131.8 49.6 3.5e-38 131.5 49.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD68957.1 - 5.9e-29 101.0 45.9 7.7e-29 100.6 45.9 1.1 1 0 0 1 1 1 1 Amino acid permease Yip1 PF04893.17 AJD68957.1 - 1e-05 25.3 16.1 1e-05 25.3 16.1 3.8 1 1 1 2 2 2 1 Yip1 domain EutB PF06751.11 AJD68958.1 - 4.3e-220 731.0 0.1 5.1e-220 730.8 0.1 1.0 1 0 0 1 1 1 1 Ethanolamine ammonia lyase large subunit (EutB) EutC PF05985.11 AJD68959.1 - 1.8e-95 318.7 1.6 2e-95 318.5 1.6 1.0 1 0 0 1 1 1 1 Ethanolamine ammonia-lyase light chain (EutC) Lactamase_B PF00753.27 AJD68961.1 - 5.5e-18 65.7 4.8 9.6e-18 64.9 4.8 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD68961.1 - 1.9e-05 24.3 2.3 4.5e-05 23.0 2.3 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Pyrid_ox_like PF16242.5 AJD68962.1 - 1.8e-30 105.5 0.0 2.1e-30 105.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like HTH_Tnp_1 PF01527.20 AJD68965.1 - 1.6e-19 70.0 0.0 1.9e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AJD68965.1 - 1.7e-08 34.0 0.0 2.9e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 AJD68965.1 - 1.4e-05 25.1 0.0 2.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AJD68965.1 - 0.00011 21.7 0.5 0.0029 17.1 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 AJD68965.1 - 0.00029 21.0 1.2 0.00085 19.5 0.5 1.9 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD68965.1 - 0.0012 18.8 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD68965.1 - 0.0033 17.4 0.9 0.0053 16.8 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase Terminase_5 PF06056.12 AJD68965.1 - 0.008 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_ISL3 PF13542.6 AJD68965.1 - 0.016 14.6 0.1 0.038 13.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 SHE3 PF17078.5 AJD68965.1 - 0.024 14.3 0.7 0.032 14.0 0.7 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 HTH_11 PF08279.12 AJD68965.1 - 0.039 13.9 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 HTH domain MarR_2 PF12802.7 AJD68965.1 - 0.056 13.3 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF1492 PF07374.11 AJD68965.1 - 0.066 13.4 0.4 0.15 12.2 0.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1492) HTH_IclR PF09339.10 AJD68965.1 - 0.078 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1657 PF07870.11 AJD68965.1 - 0.095 12.6 2.6 0.63 10.0 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) Pec_lyase_C PF00544.19 AJD68966.1 - 6.5e-13 48.8 8.3 5.4e-08 32.7 1.2 2.9 2 1 0 2 2 2 2 Pectate lyase Glyco_hydro_28 PF00295.17 AJD68968.1 - 9.6e-43 146.5 0.0 1.7e-42 145.7 0.0 1.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 28 SQS_PSY PF00494.19 AJD68969.1 - 0.0023 17.5 6.5 0.0037 16.8 0.3 2.2 1 1 1 2 2 2 2 Squalene/phytoene synthase HAD_2 PF13419.6 AJD68970.1 - 1.2e-29 103.7 0.0 1.4e-29 103.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD68970.1 - 5.8e-18 66.0 0.1 2.1e-17 64.1 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD68970.1 - 8.9e-10 38.5 0.1 1.7e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 AJD68970.1 - 2.5e-09 37.8 0.1 3.6e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AJD68970.1 - 0.009 15.8 0.0 2.2 7.9 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AJD68970.1 - 0.016 15.3 0.0 0.42 10.7 0.0 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glu_dehyd_C PF16912.5 AJD68970.1 - 0.028 13.9 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus Methyltransf_23 PF13489.6 AJD68971.1 - 2.1e-28 99.3 0.0 2.9e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD68971.1 - 1.1e-24 86.9 0.0 1.9e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD68971.1 - 9e-22 77.6 0.1 1.6e-21 76.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD68971.1 - 7.1e-18 64.8 0.0 9.4e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD68971.1 - 1.8e-16 60.7 0.0 3e-16 60.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 AJD68971.1 - 1.8e-10 40.6 0.0 2.1e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 AJD68971.1 - 2.3e-09 36.9 0.0 3e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 AJD68971.1 - 3.2e-08 33.4 0.0 4.5e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 AJD68971.1 - 8.9e-08 31.9 0.0 1.2e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 AJD68971.1 - 2.9e-07 30.2 0.0 7.3e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 AJD68971.1 - 9.4e-07 28.0 0.0 1.2e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DREV PF05219.12 AJD68971.1 - 3.3e-05 23.1 0.0 4.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase MetW PF07021.12 AJD68971.1 - 6.4e-05 22.6 0.0 9.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 AJD68971.1 - 0.00029 20.7 0.0 0.00046 20.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.11 AJD68971.1 - 0.00053 19.7 0.0 0.0035 17.0 0.0 2.0 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 AJD68971.1 - 0.00067 19.7 0.0 0.00098 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 AJD68971.1 - 0.003 17.0 0.0 0.0039 16.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 AJD68971.1 - 0.0061 16.5 0.0 0.011 15.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 AJD68971.1 - 0.013 14.6 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase GidB PF02527.15 AJD68971.1 - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_8 PF05148.15 AJD68971.1 - 0.17 11.7 0.0 0.64 9.8 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Amidohydro_1 PF01979.20 AJD68972.1 - 2.6e-66 224.3 0.6 3.1e-66 224.0 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 AJD68972.1 - 5.1e-18 65.8 7.4 2.5e-17 63.5 2.5 2.2 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 AJD68972.1 - 0.025 14.0 0.2 0.062 12.7 0.1 1.4 1 1 0 1 1 1 0 TatD related DNase Robl_LC7 PF03259.17 AJD68973.1 - 0.17 11.7 4.3 0.16 11.8 2.3 1.9 2 0 0 2 2 2 0 Roadblock/LC7 domain Campylo_MOMP PF05538.11 AJD68973.1 - 2.6 6.9 4.4 4.2 6.3 4.4 1.2 1 0 0 1 1 1 0 Campylobacter major outer membrane protein Elong-fact-P_C PF09285.11 AJD68974.1 - 1.2e-25 89.0 2.4 1.7e-25 88.5 0.2 2.4 3 1 0 3 3 3 1 Elongation factor P, C-terminal EFP_N PF08207.12 AJD68974.1 - 2.3e-21 75.6 1.0 5.7e-21 74.3 1.0 1.7 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 AJD68974.1 - 1.4e-19 69.8 0.2 3.5e-19 68.6 0.0 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain Fer4_12 PF13353.6 AJD68975.1 - 4.3e-05 23.8 0.0 6.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 AJD68975.1 - 4.8e-05 23.8 0.0 0.0001 22.7 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AJD68975.1 - 0.0002 21.5 0.0 0.0003 20.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain EAL PF00563.20 AJD68976.1 - 2e-70 237.0 0.0 3.2e-70 236.4 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AJD68976.1 - 1.1e-42 145.5 0.1 2.1e-42 144.6 0.1 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HAMP PF00672.25 AJD68976.1 - 4.5e-14 52.6 0.1 2.2e-13 50.4 0.1 2.3 1 0 0 1 1 1 1 HAMP domain sCache_3_2 PF17203.4 AJD68976.1 - 4.5e-10 39.8 0.8 1.3e-09 38.3 0.4 1.9 2 0 0 2 2 2 1 Single cache domain 3 CHASE8 PF17152.4 AJD68976.1 - 0.03 14.6 0.2 0.17 12.2 0.0 2.5 3 0 0 3 3 3 0 Periplasmic sensor domain DUF2222 PF09984.9 AJD68976.1 - 0.042 13.7 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised signal transduction histidine kinase domain (DUF2222) Phosphonate-bd PF12974.7 AJD68977.1 - 3.1e-39 135.0 0.0 4.1e-39 134.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SpoU_methylase PF00588.19 AJD68978.1 - 1.8e-35 122.2 0.0 2.5e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Inositol_P PF00459.25 AJD68979.1 - 9e-64 215.6 0.0 1.1e-63 215.4 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 AJD68979.1 - 0.023 14.2 0.0 0.049 13.1 0.0 1.6 2 0 0 2 2 2 0 Fructose-1-6-bisphosphatase, N-terminal domain Sod_Fe_C PF02777.18 AJD68980.1 - 3.8e-40 136.2 0.1 8.8e-40 135.0 0.0 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 AJD68980.1 - 1.6e-34 118.2 0.9 2.6e-34 117.5 0.9 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Ribonuclease PF00545.20 AJD68981.1 - 7.2e-27 94.0 0.2 8.8e-27 93.7 0.2 1.1 1 0 0 1 1 1 1 ribonuclease Barstar PF01337.18 AJD68982.1 - 7.3e-24 83.6 0.3 1.2e-23 82.9 0.3 1.3 1 0 0 1 1 1 1 Barstar (barnase inhibitor) ABC_tran PF00005.27 AJD68983.1 - 1.3e-52 178.0 0.0 5e-26 91.8 0.0 3.3 4 1 0 4 4 2 2 ABC transporter AAA_21 PF13304.6 AJD68983.1 - 7e-21 75.3 9.7 2e-05 24.6 0.0 4.2 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_CTD PF16326.5 AJD68983.1 - 2e-20 72.8 3.1 2e-20 72.8 3.1 2.6 3 0 0 3 3 2 1 ABC transporter C-terminal domain SMC_N PF02463.19 AJD68983.1 - 9.7e-11 41.5 0.3 0.00018 21.0 0.1 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain ABC_tran_Xtn PF12848.7 AJD68983.1 - 4.9e-10 39.3 3.1 1.2e-09 38.1 1.5 2.3 3 0 0 3 3 2 1 ABC transporter AAA_29 PF13555.6 AJD68983.1 - 1.2e-07 31.4 0.2 0.0097 15.6 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AJD68983.1 - 4.9e-07 29.8 0.3 0.013 15.5 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 AJD68983.1 - 2.2e-06 28.3 0.7 0.075 13.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 AJD68983.1 - 3.9e-06 27.2 3.0 0.06 13.6 0.3 3.7 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.6 AJD68983.1 - 7.1e-06 26.0 0.5 0.18 11.5 0.1 2.8 2 1 1 3 3 3 2 AAA ATPase domain MMR_HSR1 PF01926.23 AJD68983.1 - 7.6e-06 26.0 0.0 0.034 14.2 0.0 2.6 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_16 PF13191.6 AJD68983.1 - 9e-06 26.2 7.4 0.0017 18.8 0.1 3.1 3 1 0 3 3 2 2 AAA ATPase domain Zeta_toxin PF06414.12 AJD68983.1 - 1.4e-05 24.5 0.0 0.11 11.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA PF00004.29 AJD68983.1 - 1.7e-05 25.2 0.0 0.19 12.2 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 AJD68983.1 - 4.6e-05 23.4 2.0 0.25 11.2 0.0 2.9 3 0 0 3 3 2 2 NACHT domain AAA_33 PF13671.6 AJD68983.1 - 5.5e-05 23.4 2.7 0.18 12.0 0.0 3.6 5 0 0 5 5 3 2 AAA domain RNA_helicase PF00910.22 AJD68983.1 - 0.00011 22.6 0.0 0.34 11.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 AJD68983.1 - 0.00012 22.7 0.5 0.15 12.6 0.0 3.1 3 0 0 3 3 2 1 AAA domain TsaE PF02367.17 AJD68983.1 - 0.00013 22.0 0.2 0.76 9.8 0.1 2.8 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 AJD68983.1 - 0.0002 21.4 0.1 0.4 10.6 0.0 2.7 2 0 0 2 2 2 2 NTPase AAA_24 PF13479.6 AJD68983.1 - 0.00022 21.0 0.0 0.37 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 AJD68983.1 - 0.00044 20.0 0.4 1.1 9.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_7 PF12775.7 AJD68983.1 - 0.001 18.6 0.0 0.48 9.9 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_28 PF13521.6 AJD68983.1 - 0.0017 18.6 7.0 0.94 9.7 0.0 4.1 4 0 0 4 4 4 1 AAA domain Roc PF08477.13 AJD68983.1 - 0.0018 18.5 0.0 1.1 9.5 0.0 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase DUF87 PF01935.17 AJD68983.1 - 0.0022 18.1 0.0 0.31 11.1 0.0 2.5 2 0 0 2 2 2 1 Helicase HerA, central domain PduV-EutP PF10662.9 AJD68983.1 - 0.0023 17.7 0.5 2.5 7.8 0.1 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MobB PF03205.14 AJD68983.1 - 0.0023 17.8 0.2 0.39 10.6 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 AJD68983.1 - 0.0037 17.2 0.2 2.1 8.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 AJD68983.1 - 0.0038 16.5 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain cobW PF02492.19 AJD68983.1 - 0.004 16.8 0.0 0.23 11.0 0.0 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 AJD68983.1 - 0.0043 16.6 0.0 5.1 6.6 0.0 3.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 AJD68983.1 - 0.0077 14.9 0.6 1.6 7.3 0.0 2.6 3 0 0 3 3 3 1 AAA domain MeaB PF03308.16 AJD68983.1 - 0.0088 15.1 0.3 1.8 7.4 0.1 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 AJD68983.1 - 0.012 15.7 0.1 1.9 8.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 AJD68983.1 - 0.012 15.7 0.0 5.5 7.0 0.0 2.6 2 0 0 2 2 2 0 Dynamin family KAP_NTPase PF07693.14 AJD68983.1 - 0.012 14.8 0.0 0.71 9.0 0.0 2.3 2 1 0 2 2 2 0 KAP family P-loop domain ATP-synt_ab PF00006.25 AJD68983.1 - 0.016 14.8 0.2 3.8 7.1 0.2 2.4 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.22 AJD68983.1 - 0.021 14.5 0.0 2.8 7.5 0.0 2.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 AJD68983.1 - 0.021 14.7 0.0 2.9 7.7 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 AJD68983.1 - 0.035 14.4 0.3 0.74 10.1 0.1 2.8 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 AJD68983.1 - 0.036 13.1 0.0 0.23 10.5 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein RuvB_N PF05496.12 AJD68983.1 - 0.042 13.6 0.1 9.9 5.9 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Pox_A32 PF04665.12 AJD68983.1 - 0.055 12.9 0.1 0.91 8.9 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein DUF815 PF05673.13 AJD68983.1 - 0.063 12.4 0.0 2.1 7.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 AJD68983.1 - 0.087 12.2 0.0 7.5 5.9 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Thymidylate_kin PF02223.17 AJD68983.1 - 0.09 12.4 0.2 10 5.8 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase Rad17 PF03215.15 AJD68983.1 - 0.099 12.5 0.0 2.5 8.0 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain MukB PF04310.12 AJD68983.1 - 0.1 12.4 0.0 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 MukB N-terminal Gtr1_RagA PF04670.12 AJD68983.1 - 0.11 11.8 0.0 12 5.1 0.0 2.4 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region DEAD PF00270.29 AJD68984.1 - 1.1e-44 152.3 0.0 1.9e-44 151.5 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD68984.1 - 5e-30 104.1 0.0 6.2e-28 97.4 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.15 AJD68984.1 - 6.9e-23 80.4 0.1 1.2e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 AJD68984.1 - 3e-06 27.4 0.0 4.8e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 AJD68984.1 - 0.052 13.8 0.1 0.18 12.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain Pribosyltran PF00156.27 AJD68985.1 - 7.3e-18 64.6 0.0 9.7e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AJD68985.1 - 0.0091 15.5 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase UPF0061 PF02696.14 AJD68986.1 - 3.3e-132 441.6 0.0 4e-132 441.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family Abhydrolase_3 PF07859.13 AJD68987.1 - 8.9e-15 55.1 2.9 1.1e-12 48.3 2.9 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AJD68987.1 - 1.9e-12 47.1 0.0 3.8e-11 42.9 0.0 2.5 2 1 0 2 2 2 1 Prolyl oligopeptidase family COesterase PF00135.28 AJD68987.1 - 9.2e-12 44.6 2.2 6.2e-11 41.8 2.2 1.9 1 1 0 1 1 1 1 Carboxylesterase family Hydrolase_4 PF12146.8 AJD68987.1 - 1.4e-07 31.0 0.9 0.00023 20.5 0.0 2.5 2 1 0 2 2 2 2 Serine aminopeptidase, S33 Esterase_phd PF10503.9 AJD68987.1 - 1.3e-05 24.8 2.3 0.00061 19.4 2.3 2.9 1 1 0 1 1 1 1 Esterase PHB depolymerase DLH PF01738.18 AJD68987.1 - 1.7e-05 24.5 0.1 0.0024 17.5 0.0 2.9 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 AJD68987.1 - 3.7e-05 23.7 0.0 0.0018 18.2 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase FSH1 PF03959.13 AJD68987.1 - 0.002 17.8 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Lipase_3 PF01764.25 AJD68987.1 - 0.023 14.6 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_4 PF08386.10 AJD68987.1 - 0.14 12.3 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein GST_N PF02798.20 AJD68988.1 - 1.6e-15 57.2 0.0 2.4e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AJD68988.1 - 2e-14 53.7 0.0 3.4e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD68988.1 - 7.5e-12 45.4 0.0 1.3e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AJD68988.1 - 1.4e-08 34.8 0.0 2.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AJD68988.1 - 6e-08 32.8 0.0 9.4e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD68988.1 - 9.9e-05 22.3 0.1 0.00019 21.4 0.1 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_4 PF17172.4 AJD68988.1 - 0.051 14.3 0.0 0.088 13.6 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain CSD PF00313.22 AJD68989.1 - 7.2e-28 96.2 1.4 7.9e-28 96.1 1.4 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AJD68989.1 - 0.0015 18.1 0.1 0.0028 17.3 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease B OB domain CusF_Ec PF11604.8 AJD68989.1 - 0.055 13.4 0.3 0.077 13.0 0.3 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF YaeQ PF07152.12 AJD68990.1 - 4.6e-71 238.0 0.0 5.2e-71 237.8 0.0 1.0 1 0 0 1 1 1 1 YaeQ protein HI0933_like PF03486.14 AJD68991.1 - 5.1e-142 473.4 0.0 5.7e-142 473.2 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 AJD68991.1 - 5.8e-15 55.3 3.2 2e-10 40.3 0.7 3.1 2 1 1 3 3 3 3 FAD binding domain Pyr_redox_3 PF13738.6 AJD68991.1 - 1.3e-13 50.9 0.6 7.1e-08 32.1 0.0 2.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD68991.1 - 3.6e-11 43.2 2.2 0.00013 21.7 0.0 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AJD68991.1 - 1.1e-08 34.7 0.2 2.3e-08 33.7 0.2 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AJD68991.1 - 7e-08 32.1 2.0 1.1e-06 28.2 2.0 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 AJD68991.1 - 5e-07 29.4 0.4 7.7e-07 28.8 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD68991.1 - 2.9e-05 24.2 1.1 7.7e-05 22.9 1.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 AJD68991.1 - 5.2e-05 22.5 6.1 0.0033 16.6 2.5 2.6 2 1 0 2 2 2 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 AJD68991.1 - 0.00036 19.9 0.0 0.00064 19.1 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 AJD68991.1 - 0.00041 19.5 1.5 0.0038 16.3 1.5 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 AJD68991.1 - 0.0011 19.5 0.4 0.025 15.1 0.4 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD68991.1 - 0.008 15.4 0.4 0.015 14.6 0.4 1.3 1 0 0 1 1 1 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 AJD68991.1 - 0.21 11.1 0.3 0.37 10.3 0.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EAL PF00563.20 AJD68992.1 - 4.8e-53 180.1 1.7 3.7e-52 177.2 0.1 2.7 3 0 0 3 3 3 1 EAL domain GGDEF PF00990.21 AJD68992.1 - 1.7e-17 63.6 0.0 4.6e-17 62.2 0.0 1.8 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 AJD68992.1 - 1.2e-05 25.5 0.0 2.9e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 AJD68992.1 - 0.0001 22.2 0.0 0.0004 20.3 0.0 2.1 1 0 0 1 1 1 1 PAS domain HD_4 PF13328.6 AJD68992.1 - 0.029 14.1 0.5 0.25 11.1 0.2 2.7 1 1 1 2 2 2 0 HD domain Response_reg PF00072.24 AJD68992.1 - 0.071 13.3 0.1 0.66 10.2 0.1 2.5 2 0 0 2 2 2 0 Response regulator receiver domain PIN PF01850.21 AJD68992.1 - 0.11 13.0 0.3 0.49 10.9 0.3 2.1 1 0 0 1 1 1 0 PIN domain Peptidase_M48 PF01435.18 AJD68993.1 - 2e-41 141.9 0.1 3.2e-41 141.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 AJD68993.1 - 0.00098 18.4 0.0 0.0026 17.0 0.0 1.6 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF3681 PF12442.8 AJD68993.1 - 0.0096 16.4 3.6 0.03 14.8 1.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF3681) DUF4157 PF13699.6 AJD68993.1 - 0.013 15.8 0.2 0.023 14.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M1 PF01433.20 AJD68993.1 - 0.025 14.2 0.1 0.041 13.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase family M1 domain SprT-like PF10263.9 AJD68993.1 - 0.035 14.0 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 SprT-like family tRNA-synt_1c PF00749.21 AJD68994.1 - 2.1e-47 161.5 0.0 2.2e-24 85.9 0.0 2.0 1 1 1 2 2 2 2 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1b PF00579.25 AJD68994.1 - 0.044 13.1 0.0 2.7 7.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) DUF3148 PF11347.8 AJD68994.1 - 0.12 12.2 0.1 10 6.0 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3148) adh_short PF00106.25 AJD68995.1 - 5e-60 202.3 0.8 5.9e-60 202.1 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD68995.1 - 2.7e-59 200.6 1.5 3.3e-59 200.3 1.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD68995.1 - 2.7e-24 86.1 0.6 4.1e-24 85.5 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD68995.1 - 7.8e-10 38.6 0.3 2.4e-09 37.0 0.3 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD68995.1 - 6.6e-09 35.9 0.5 1e-08 35.3 0.5 1.3 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 AJD68995.1 - 3.4e-06 26.7 0.1 3.3e-05 23.4 0.0 2.1 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 AJD68995.1 - 5.4e-05 23.7 0.3 0.00013 22.5 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 AJD68995.1 - 0.00017 21.2 0.1 0.00031 20.4 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 AJD68995.1 - 0.0014 17.8 0.1 0.0019 17.4 0.1 1.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein FmdA_AmdA PF03069.15 AJD68995.1 - 0.0059 15.5 0.0 0.0088 14.9 0.0 1.2 1 0 0 1 1 1 1 Acetamidase/Formamidase family 3Beta_HSD PF01073.19 AJD68995.1 - 0.0069 15.4 0.0 0.014 14.4 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Glyco_transf_28 PF03033.20 AJD68995.1 - 0.02 15.0 0.4 0.042 13.9 0.1 1.9 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain NAD_binding_4 PF07993.12 AJD68995.1 - 0.023 13.9 0.1 0.04 13.1 0.1 1.7 1 1 0 1 1 1 0 Male sterility protein ApbA PF02558.16 AJD68995.1 - 0.045 13.4 0.1 0.069 12.8 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 AJD68995.1 - 0.075 13.0 1.0 0.11 12.4 0.1 1.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PHB_acc_N PF07879.11 AJD68996.1 - 5.4e-28 96.9 0.5 9.5e-28 96.1 0.5 1.4 1 0 0 1 1 1 1 PHB/PHA accumulation regulator DNA-binding domain PHB_acc PF05233.13 AJD68996.1 - 1.9e-18 66.2 7.1 1.9e-18 66.2 7.1 2.3 3 0 0 3 3 3 1 PHB accumulation regulatory domain TAF6_C PF07571.13 AJD68996.1 - 0.074 13.4 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 TAF6 C-terminal HEAT repeat domain TraB PF01963.17 AJD68997.1 - 1.1e-77 261.6 0.4 1.2e-77 261.4 0.4 1.0 1 0 0 1 1 1 1 TraB family DUF1684 PF07920.11 AJD68998.1 - 3.7e-42 143.9 0.0 5.6e-42 143.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) MutL_C PF08676.11 AJD68999.1 - 9.5e-50 168.2 0.1 1.6e-49 167.4 0.1 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 AJD68999.1 - 2.6e-38 130.3 0.0 3.8e-38 129.8 0.0 1.2 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 AJD68999.1 - 2.7e-10 40.2 0.0 4.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 AJD68999.1 - 3.5e-07 30.7 0.0 1e-06 29.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amidase_3 PF01520.18 AJD69000.1 - 1.6e-47 161.9 0.0 2.1e-47 161.5 0.0 1.2 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase AMIN PF11741.8 AJD69000.1 - 3.2e-13 49.6 0.0 4.1e-12 46.1 0.0 2.2 2 0 0 2 2 2 1 AMIN domain TsaE PF02367.17 AJD69001.1 - 2.8e-31 108.1 0.0 3.5e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 AJD69001.1 - 0.0013 18.9 0.0 0.0017 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD69001.1 - 0.0019 18.6 0.3 0.0046 17.4 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 AJD69001.1 - 0.0098 16.4 0.0 0.018 15.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.12 AJD69001.1 - 0.043 13.1 0.1 0.059 12.6 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 AJD69001.1 - 0.067 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD69001.1 - 0.068 13.7 0.0 0.095 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 AJD69001.1 - 0.085 12.0 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 AJD69001.1 - 0.1 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 AJD69001.1 - 0.16 12.5 0.0 0.21 12.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AJD69001.1 - 0.17 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 AJD69001.1 - 0.18 12.2 0.0 0.28 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 AJD69001.1 - 0.2 11.6 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RNA_helicase PF00910.22 AJD69001.1 - 0.24 11.8 0.0 0.34 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA helicase Carb_kinase PF01256.17 AJD69002.1 - 4.2e-60 203.2 3.6 7.4e-60 202.4 3.6 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 AJD69002.1 - 9.6e-38 129.7 0.2 9.6e-38 129.7 0.2 2.1 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 AJD69002.1 - 4.8e-05 22.9 0.1 0.00014 21.3 0.0 1.7 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family PGM_PMM_II PF02879.16 AJD69002.1 - 0.048 14.3 0.0 4.8 7.9 0.0 2.9 1 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Phos_pyr_kin PF08543.12 AJD69002.1 - 0.094 12.1 0.0 0.24 10.7 0.0 1.6 1 1 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF1730 PF08331.10 AJD69003.1 - 4.1e-23 81.1 0.0 6.6e-23 80.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1730) Fer4_16 PF13484.6 AJD69003.1 - 2e-19 70.3 5.3 3.2e-19 69.6 5.3 1.3 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 AJD69003.1 - 1.9e-05 25.1 5.2 3.8e-05 24.2 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AJD69003.1 - 2.6e-05 24.2 3.4 0.018 15.1 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 AJD69003.1 - 8.9e-05 22.6 2.2 0.014 15.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 AJD69003.1 - 0.001 19.0 9.0 0.1 12.7 4.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 AJD69003.1 - 0.0067 16.9 1.5 0.67 10.4 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 AJD69003.1 - 0.009 16.1 6.9 0.62 10.2 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 AJD69003.1 - 0.036 13.9 10.1 0.077 12.8 3.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 AJD69003.1 - 0.2 11.8 3.1 1.4 9.2 1.3 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 AJD69003.1 - 0.25 12.0 9.0 11 6.9 0.1 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 AJD69003.1 - 0.49 11.4 8.1 12 7.1 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 AJD69003.1 - 6.8 7.0 12.4 13 6.1 5.0 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Exonuc_VII_L PF02601.15 AJD69004.1 - 7.8e-93 311.4 8.2 9.7e-93 311.1 8.2 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 AJD69004.1 - 3.1e-27 94.6 0.0 7.1e-27 93.4 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 AJD69004.1 - 7.8e-08 32.2 0.0 1.9e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain UPF0126 PF03458.13 AJD69004.1 - 0.11 12.4 0.0 17 5.4 0.0 2.4 2 0 0 2 2 2 0 UPF0126 domain DUF3287 PF11690.8 AJD69004.1 - 5.4 6.8 6.6 17 5.1 6.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) VirJ PF06057.11 AJD69005.1 - 1.4e-84 282.7 0.1 1.6e-83 279.3 0.1 2.0 2 0 0 2 2 2 1 Bacterial virulence protein (VirJ) Hydrolase_4 PF12146.8 AJD69005.1 - 0.00029 20.2 1.0 0.18 11.0 0.1 2.6 2 1 0 2 2 2 2 Serine aminopeptidase, S33 FixO PF02433.15 AJD69005.1 - 0.018 14.5 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase, mono-heme subunit/FixO FGE-sulfatase PF03781.16 AJD69006.1 - 3.6e-67 226.7 11.0 4.8e-67 226.3 11.0 1.2 1 0 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 TPR_11 PF13414.6 AJD69006.1 - 0.088 12.5 0.0 0.29 10.8 0.0 1.8 1 0 0 1 1 1 0 TPR repeat DNA_pol_A_exo1 PF01612.20 AJD69007.1 - 1.7e-28 99.5 0.0 2.9e-28 98.8 0.0 1.4 1 0 0 1 1 1 1 3'-5' exonuclease HRDC PF00570.23 AJD69007.1 - 7.7e-06 25.8 6.9 3.6e-05 23.6 2.1 2.6 2 0 0 2 2 2 1 HRDC domain CHASE2 PF05226.11 AJD69007.1 - 0.023 14.4 0.0 0.068 12.9 0.0 1.5 1 1 0 1 1 1 0 CHASE2 domain Imm75 PF15660.6 AJD69007.1 - 0.059 13.6 0.8 0.14 12.5 0.8 1.7 1 0 0 1 1 1 0 Putative Immunity protein 75 LigD_N PF13298.6 AJD69009.1 - 1.1e-34 118.8 0.1 2e-34 118.0 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DNA_ligase_A_M PF01068.21 AJD69009.1 - 3.7e-25 88.8 0.0 5.8e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.15 AJD69009.1 - 3.8e-17 62.7 0.0 1.1e-16 61.2 0.0 1.9 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 AJD69009.1 - 0.18 11.6 0.0 0.38 10.6 0.0 1.5 1 1 0 1 1 1 0 mRNA capping enzyme, catalytic domain DUF3606 PF12244.8 AJD69010.1 - 7e-21 73.9 0.1 7.7e-21 73.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3606) Histone_HNS PF00816.21 AJD69011.1 - 1.2e-17 64.5 1.3 1.8e-17 63.9 1.3 1.2 1 0 0 1 1 1 1 H-NS histone family G-gamma PF00631.22 AJD69011.1 - 0.059 13.4 1.1 0.084 12.9 0.6 1.5 2 0 0 2 2 2 0 GGL domain BBS2_C PF14782.6 AJD69011.1 - 0.11 11.2 0.5 0.12 11.2 0.5 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal Phage_integrase PF00589.22 AJD69012.1 - 8.9e-24 84.2 0.0 1.6e-23 83.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Arm-DNA-bind_4 PF14657.6 AJD69012.1 - 0.0016 18.1 0.0 0.0039 16.9 0.0 1.8 1 0 0 1 1 1 1 Arm DNA-binding domain MYO10_CC PF16735.5 AJD69012.1 - 0.097 12.8 0.2 0.35 11.0 0.0 2.2 2 0 0 2 2 2 0 Unconventional myosin-X coiled coil domain DUF2188 PF09954.9 AJD69012.1 - 0.098 12.8 0.7 0.38 10.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) GXWXG PF14231.6 AJD69014.1 - 0.036 14.1 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 GXWXG protein Cytochrom_B558a PF05038.13 AJD69015.1 - 0.029 14.0 0.3 0.029 14.0 0.3 1.5 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit DDE_Tnp_1 PF01609.21 AJD69016.1 - 4e-11 43.0 0.1 3.6e-10 39.9 0.0 2.3 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 AJD69016.1 - 3.6e-07 30.1 0.0 1.1e-06 28.5 0.0 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 AJD69016.1 - 5.2e-05 23.5 0.1 0.00016 21.9 0.1 1.8 1 0 0 1 1 1 1 Transposase DDE domain rve PF00665.26 AJD69017.1 - 1.1e-24 86.9 0.0 2.4e-24 85.8 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD69017.1 - 1.1e-23 82.8 0.2 2.4e-23 81.7 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD69017.1 - 3.9e-05 23.7 0.1 7.6e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 HTH-like domain HTH_psq PF05225.16 AJD69017.1 - 0.0019 17.9 0.1 0.005 16.5 0.1 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain DDE_Tnp_1_2 PF13586.6 AJD69017.1 - 0.044 14.1 0.5 0.25 11.7 0.1 2.3 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.6 AJD69017.1 - 0.05 13.8 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 DDE domain Rhomboid_SP PF12595.8 AJD69017.1 - 0.22 10.9 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Rhomboid serine protease HTH_Tnp_1 PF01527.20 AJD69018.1 - 1.2e-21 76.7 0.0 1.6e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AJD69018.1 - 3.8e-07 29.7 0.0 7.9e-07 28.7 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 AJD69018.1 - 1.2e-06 28.6 0.0 2.2e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AJD69018.1 - 0.00039 20.6 0.1 0.00071 19.7 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD69018.1 - 0.00039 20.4 0.0 0.00056 19.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_26 PF13443.6 AJD69018.1 - 0.0018 18.6 0.7 0.088 13.3 0.0 2.3 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 AJD69018.1 - 0.012 15.6 0.1 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD69018.1 - 0.041 13.5 0.2 0.2 11.3 0.0 2.1 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_Tnp_IS630 PF01710.16 AJD69018.1 - 0.046 13.8 0.0 1.3 9.1 0.0 2.0 1 1 1 2 2 2 0 Transposase CENP-B_N PF04218.13 AJD69018.1 - 0.048 13.3 0.1 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain TSC22 PF01166.18 AJD69018.1 - 0.08 13.3 0.9 0.15 12.4 0.9 1.5 1 1 0 1 1 1 0 TSC-22/dip/bun family DUF2857 PF11198.8 AJD69019.1 - 0.051 13.3 0.1 0.07 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) DUF4657 PF15552.6 AJD69021.1 - 0.0095 15.5 0.0 0.0099 15.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4657) RHH_1 PF01402.21 AJD69022.1 - 3.8e-12 45.7 0.7 7.1e-12 44.8 0.3 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family UCMA PF17085.5 AJD69022.1 - 0.009 16.0 0.9 0.011 15.7 0.9 1.1 1 0 0 1 1 1 1 Unique cartilage matrix associated protein VapB_antitoxin PF09957.9 AJD69022.1 - 0.029 14.3 1.2 0.075 13.0 1.2 1.8 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PSK_trans_fac PF07704.11 AJD69022.1 - 0.035 14.9 0.4 0.042 14.6 0.4 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor CobU PF02283.16 AJD69022.1 - 0.039 13.5 1.6 0.041 13.5 1.6 1.2 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Phage_TAC_4 PF08748.11 AJD69022.1 - 0.062 13.6 0.3 0.072 13.4 0.3 1.1 1 0 0 1 1 1 0 Phage tail assembly chaperone Leu_Phe_trans PF03588.14 AJD69022.1 - 0.087 12.3 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Leucyl/phenylalanyl-tRNA protein transferase DDE_Tnp_Tn3 PF01526.17 AJD69023.1 - 1.1e-105 353.7 0.1 1.2e-105 353.5 0.1 1.0 1 0 0 1 1 1 1 Tn3 transposase DDE domain HTH_Tnp_1 PF01527.20 AJD69024.1 - 0.00049 20.4 0.8 0.0022 18.3 0.8 1.8 1 1 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69024.1 - 0.012 15.8 0.2 0.013 15.6 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 AJD69024.1 - 0.052 13.5 0.0 0.057 13.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 AJD69024.1 - 0.082 12.7 0.4 0.13 12.1 0.4 1.6 1 1 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 AJD69025.1 - 1.4e-27 96.2 0.0 2.3e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD69025.1 - 3.8e-15 55.8 2.5 2e-14 53.5 1.8 2.6 3 0 0 3 3 3 1 HTH-like domain rve_3 PF13683.6 AJD69025.1 - 5.7e-13 48.4 0.0 1.3e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AJD69025.1 - 3.5e-05 23.9 0.0 6.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain Resolvase PF00239.21 AJD69027.1 - 5.4e-23 81.7 1.9 1.6e-22 80.2 1.9 1.8 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.6 AJD69027.1 - 0.0014 18.4 0.7 0.0048 16.7 0.7 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 AJD69027.1 - 0.0014 18.7 0.0 0.0034 17.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase AAA_13 PF13166.6 AJD69028.1 - 1.3e-17 63.8 6.0 6.6e-11 41.6 0.3 3.1 2 1 1 3 3 3 3 AAA domain AAA_21 PF13304.6 AJD69028.1 - 1.2e-06 28.6 1.2 0.011 15.5 0.1 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD69028.1 - 2.5e-06 27.1 0.1 5.8e-06 25.9 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 AJD69028.1 - 8.7e-06 26.3 0.0 0.047 14.2 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_15 PF13175.6 AJD69028.1 - 0.0026 17.6 14.4 0.018 14.8 14.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 AJD69028.1 - 0.0071 16.9 10.3 0.095 13.2 10.3 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 AJD69028.1 - 0.049 14.1 0.0 0.24 11.8 0.0 2.3 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) MIP-T3_C PF17749.1 AJD69028.1 - 0.074 13.0 0.6 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region AAA_25 PF13481.6 AJD69028.1 - 0.12 12.0 0.0 0.5 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain N6_Mtase PF02384.16 AJD69030.1 - 7.5e-05 22.1 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase MTS PF05175.14 AJD69030.1 - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.11 AJD69030.1 - 0.0036 17.8 0.0 0.0083 16.6 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Cons_hypoth95 PF03602.15 AJD69030.1 - 0.0061 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PRMT5 PF05185.16 AJD69030.1 - 0.013 15.3 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_25 PF13649.6 AJD69030.1 - 0.025 15.3 0.0 0.062 14.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 AJD69030.1 - 0.064 12.9 0.1 0.48 10.1 0.1 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Met_10 PF02475.16 AJD69030.1 - 0.093 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_31 PF13847.6 AJD69030.1 - 0.15 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RE_XamI PF09572.10 AJD69031.1 - 5.9e-75 252.2 0.1 7.4e-75 251.9 0.1 1.1 1 0 0 1 1 1 1 XamI restriction endonuclease DUF2000 PF09391.10 AJD69031.1 - 0.016 15.1 0.0 0.067 13.1 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2000) Sulfakinin PF08257.11 AJD69032.1 - 0.19 11.8 0.9 0.47 10.6 0.9 1.7 1 0 0 1 1 1 0 Sulfakinin family PRiA4_ORF3 PF07929.11 AJD69033.1 - 1.1e-32 113.1 0.0 1.6e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein PKD PF00801.20 AJD69033.1 - 0.088 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 PKD domain CcmD PF04995.14 AJD69034.1 - 0.24 11.5 2.3 2.1 8.5 0.3 2.2 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) RHH_1 PF01402.21 AJD69035.1 - 1.2e-07 31.3 0.1 6.6e-06 25.9 0.0 2.1 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family COG2 PF06148.11 AJD69036.1 - 0.019 15.0 0.2 0.022 14.8 0.2 1.1 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TMP-TENI PF02581.17 AJD69036.1 - 0.077 12.3 0.2 0.084 12.2 0.2 1.0 1 0 0 1 1 1 0 Thiamine monophosphate synthase RepA_C PF04796.12 AJD69037.1 - 1.7e-28 99.7 0.0 2.4e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 Plasmid encoded RepA protein SIR2_2 PF13289.6 AJD69038.1 - 3.8e-11 43.3 0.0 1.2e-10 41.7 0.0 1.8 1 1 0 1 1 1 1 SIR2-like domain AstE_AspA PF04952.14 AJD69038.1 - 0.022 13.8 0.0 0.039 13.0 0.0 1.3 1 0 0 1 1 1 0 Succinylglutamate desuccinylase / Aspartoacylase family DUF87 PF01935.17 AJD69039.1 - 3e-24 86.4 0.0 2.8e-22 79.9 0.0 2.3 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 AJD69039.1 - 1.1e-05 24.6 0.0 0.00025 20.1 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 AJD69039.1 - 0.0028 18.0 0.0 0.23 11.7 0.0 2.8 2 1 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 AJD69039.1 - 0.0042 16.5 0.0 0.08 12.3 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family S19 PF06756.11 AJD69039.1 - 0.014 15.3 0.0 0.042 13.8 0.0 1.8 2 0 0 2 2 2 0 Chorion protein S19 C-terminal AAA_10 PF12846.7 AJD69039.1 - 0.018 14.0 0.0 0.4 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.29 AJD69039.1 - 0.15 12.5 0.1 0.68 10.4 0.0 2.1 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) GGDEF PF00990.21 AJD69041.1 - 4.2e-21 75.4 0.0 6.5e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain DUF588 PF04535.12 AJD69041.1 - 0.00073 19.4 0.7 0.0017 18.2 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF588) GAF_3 PF13492.6 AJD69041.1 - 0.0046 17.3 0.3 0.017 15.5 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 AJD69041.1 - 0.0093 16.3 0.3 0.025 14.9 0.1 1.8 2 0 0 2 2 2 1 GAF domain CheW PF01584.19 AJD69042.1 - 1.5e-33 115.4 1.0 1.7e-33 115.2 1.0 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 AJD69043.1 - 2.7e-37 128.2 46.2 5.4e-34 117.5 20.0 5.1 3 2 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 AJD69043.1 - 2.8e-24 85.7 0.1 2.8e-24 85.7 0.1 4.2 4 1 0 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 AJD69043.1 - 6e-10 39.3 0.4 6e-10 39.3 0.4 3.9 5 0 0 5 5 5 1 HAMP domain Mur_ligase_C PF02875.21 AJD69043.1 - 0.00085 19.5 0.8 0.018 15.3 0.1 2.8 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain DUF4307 PF14155.6 AJD69043.1 - 0.024 14.4 2.0 6.4 6.6 0.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4307) Sec34 PF04136.15 AJD69043.1 - 0.074 12.9 13.6 1 9.3 1.7 3.8 3 2 0 3 3 3 0 Sec34-like family SKA2 PF16740.5 AJD69043.1 - 0.23 11.3 12.7 0.92 9.3 0.6 3.6 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 YjcZ PF13990.6 AJD69043.1 - 0.58 9.5 11.7 0.046 13.1 1.9 2.5 2 0 0 2 2 2 0 YjcZ-like protein LapA_dom PF06305.11 AJD69043.1 - 1.2 9.0 3.9 12 5.8 0.2 2.9 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Atg14 PF10186.9 AJD69043.1 - 3.5 6.6 21.7 0.57 9.2 4.5 3.2 3 1 1 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 AJD69043.1 - 5 7.8 12.3 50 4.6 0.0 4.6 4 1 1 5 5 4 0 SlyX COG5 PF10392.9 AJD69043.1 - 5 7.3 8.3 11 6.2 1.4 3.0 2 1 0 2 2 2 0 Golgi transport complex subunit 5 DUF948 PF06103.11 AJD69043.1 - 5.6 7.3 24.2 1.3 9.3 4.0 5.5 4 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) Pur_DNA_glyco PF02245.16 AJD69044.1 - 7.7e-62 207.8 0.0 8.7e-62 207.6 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) DEAD_assoc PF08494.11 AJD69045.1 - 8e-52 175.8 0.1 3.1e-51 173.9 0.1 2.1 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 AJD69045.1 - 1.7e-27 96.3 0.0 6e-27 94.5 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD69045.1 - 2e-17 63.5 0.0 5.4e-17 62.1 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 AJD69045.1 - 5.2e-09 36.3 0.0 3.8e-08 33.5 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HTH_9 PF08221.11 AJD69045.1 - 0.015 15.4 0.0 0.23 11.6 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PhoH PF02562.16 AJD69045.1 - 0.024 14.1 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Extensin-like_C PF06904.12 AJD69045.1 - 0.033 14.2 0.0 0.08 13.0 0.0 1.6 1 0 0 1 1 1 0 Extensin-like protein C-terminus AAA_25 PF13481.6 AJD69045.1 - 0.052 13.1 2.0 0.16 11.5 0.1 2.9 2 0 0 2 2 2 0 AAA domain DUF3301 PF11743.8 AJD69046.1 - 2.9e-28 97.4 0.1 3.3e-28 97.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3301) SspB PF04386.13 AJD69048.1 - 3.7e-33 114.7 0.0 5.4e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 Stringent starvation protein B GST_N_3 PF13417.6 AJD69049.1 - 6.2e-13 49.0 0.5 1.9e-12 47.4 0.3 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD69049.1 - 3.2e-11 43.4 0.1 1.2e-10 41.5 0.1 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AJD69049.1 - 3.8e-11 43.2 0.0 6.8e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AJD69049.1 - 8e-07 29.2 0.0 1.2e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD69049.1 - 0.00024 21.0 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Glutaredoxin PF00462.24 AJD69049.1 - 0.035 14.3 0.0 0.082 13.1 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin Cytochrom_C1 PF02167.15 AJD69050.1 - 1.1e-25 90.7 0.5 6.2e-23 81.7 0.5 2.9 1 1 0 1 1 1 1 Cytochrome C1 family Cytochrom_C PF00034.21 AJD69050.1 - 0.0067 17.5 0.4 0.024 15.8 0.4 2.2 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AJD69050.1 - 0.017 15.4 0.2 0.046 14.0 0.2 1.8 1 1 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_B PF00033.19 AJD69051.1 - 4.2e-68 228.9 17.7 4.2e-68 228.9 17.7 1.9 2 0 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 AJD69051.1 - 5.3e-44 150.2 5.5 5.3e-44 150.2 5.5 2.2 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.17 AJD69051.1 - 5.8e-38 129.3 1.5 5.8e-38 129.3 1.5 3.2 4 1 0 4 4 4 1 Cytochrome b(C-terminal)/b6/petD UCR_Fe-S_N PF10399.9 AJD69052.1 - 6.8e-15 54.1 3.3 1.1e-14 53.5 3.3 1.3 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Rieske PF00355.26 AJD69052.1 - 6.4e-10 38.8 0.0 1.7e-09 37.5 0.0 1.7 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain UCR_TM PF02921.14 AJD69052.1 - 0.25 11.8 0.8 1.6 9.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquinol cytochrome reductase transmembrane region SLT PF01464.20 AJD69053.1 - 1.3e-27 95.7 0.1 2.3e-27 94.9 0.1 1.4 1 0 0 1 1 1 1 Transglycosylase SLT domain SLT_2 PF13406.6 AJD69053.1 - 1.3e-05 24.6 3.8 0.025 13.8 0.4 2.2 1 1 1 2 2 2 2 Transglycosylase SLT domain DUF4124 PF13511.6 AJD69053.1 - 2.1 8.7 23.7 24 5.3 0.3 4.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4124) WYL PF13280.6 AJD69054.1 - 1.1e-20 74.4 0.0 1.4e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 AJD69054.1 - 3.5e-12 46.1 0.0 6.7e-12 45.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 AJD69054.1 - 2.2e-07 31.1 0.1 4.7e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 AJD69054.1 - 0.0015 18.6 0.3 0.0068 16.4 0.3 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 AJD69054.1 - 0.016 15.4 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 AJD69054.1 - 0.026 14.5 0.3 0.074 13.1 0.3 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 AJD69054.1 - 0.043 13.9 0.1 0.043 13.9 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 AJD69054.1 - 0.094 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain WYL_2 PF10902.8 AJD69054.1 - 0.16 12.4 1.1 0.26 11.7 1.1 1.3 1 0 0 1 1 1 0 WYL_2, Sm-like SH3 beta-barrel fold DUF3618 PF12277.8 AJD69054.1 - 0.38 11.0 0.1 0.38 11.0 0.1 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF3618) GST_N PF02798.20 AJD69055.1 - 4e-15 55.9 0.0 6.5e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AJD69055.1 - 2.9e-11 43.6 0.0 4.6e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD69055.1 - 8e-09 35.7 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD69055.1 - 3.1e-05 23.9 0.2 7.3e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD69055.1 - 0.00069 19.8 0.0 0.0013 18.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AJD69055.1 - 0.013 15.7 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain UPF0004 PF00919.20 AJD69056.1 - 3.7e-30 103.9 0.0 6.7e-30 103.0 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 AJD69056.1 - 1.1e-27 97.5 0.0 2e-27 96.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 AJD69056.1 - 5.2e-20 71.2 0.0 1.1e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 AJD69056.1 - 0.013 15.6 0.0 0.068 13.3 0.0 2.1 1 1 0 1 1 1 0 TRAM domain PhoH PF02562.16 AJD69057.1 - 3.5e-92 307.5 0.0 5.3e-92 306.9 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 AJD69057.1 - 1.6e-09 37.8 0.3 3.7e-09 36.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 AJD69057.1 - 0.0017 18.7 1.3 0.0043 17.4 0.1 2.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 AJD69057.1 - 0.002 17.9 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 AJD69057.1 - 0.014 15.7 0.0 0.066 13.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 AJD69057.1 - 0.068 12.9 0.0 0.64 9.8 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase SLS PF14611.6 AJD69057.1 - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator FliH PF02108.16 AJD69057.1 - 0.14 12.2 0.1 0.28 11.3 0.1 1.5 1 1 0 1 1 1 0 Flagellar assembly protein FliH UvrD-helicase PF00580.21 AJD69057.1 - 0.18 11.3 0.1 9 5.7 0.0 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain UPF0054 PF02130.17 AJD69059.1 - 2.2e-35 121.3 0.0 2.6e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 CorC_HlyC PF03471.17 AJD69061.1 - 1.5e-22 79.4 0.6 4.1e-22 78.0 0.0 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 AJD69061.1 - 1.1e-12 48.2 3.1 3e-05 24.4 0.2 2.8 3 0 0 3 3 3 2 CBS domain DUF4105 PF13387.6 AJD69062.1 - 6.5e-17 61.7 0.0 9.5e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4105) 7TMR-DISM_7TM PF07695.11 AJD69062.1 - 0.99 9.3 10.8 0.2 11.5 6.7 1.9 2 0 0 2 2 2 0 7TM diverse intracellular signalling CorA PF01544.18 AJD69063.1 - 3.4e-61 207.1 0.0 4e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Reg_prop PF07494.11 AJD69063.1 - 0.15 12.4 0.1 3.1 8.3 0.0 2.5 2 0 0 2 2 2 0 Two component regulator propeller Aldedh PF00171.22 AJD69064.1 - 7.5e-137 456.6 0.2 8.3e-137 456.4 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 AJD69064.1 - 0.0065 15.6 0.0 0.0095 15.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) baeRF_family2 PF18844.1 AJD69064.1 - 4.8 7.2 12.0 0.13 12.3 0.6 3.0 3 1 0 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 2 BPD_transp_1 PF00528.22 AJD69065.1 - 1.4e-17 64.1 18.0 1.4e-17 64.1 18.0 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.21 AJD69065.1 - 0.016 15.7 4.5 0.016 15.7 4.5 3.7 3 1 0 3 3 3 0 FtsX-like permease family BPD_transp_1 PF00528.22 AJD69066.1 - 5e-18 65.5 14.5 5e-18 65.5 14.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component COX7C PF02935.16 AJD69066.1 - 0.42 10.9 7.5 7.1 7.0 1.9 2.7 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VIIc ABC_tran PF00005.27 AJD69067.1 - 1.4e-35 122.7 0.0 2.1e-35 122.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 AJD69067.1 - 1.2e-20 73.5 0.0 3.1e-20 72.1 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 AJD69067.1 - 2.4e-07 30.9 0.1 0.023 14.5 0.0 2.6 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AJD69067.1 - 0.00052 19.7 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 AJD69067.1 - 0.00084 18.8 0.3 0.03 13.8 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD69067.1 - 0.0035 17.8 0.1 0.0067 16.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD69067.1 - 0.0098 15.8 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 AJD69067.1 - 0.012 16.1 0.0 0.02 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 AJD69067.1 - 0.018 13.8 0.5 0.56 8.9 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.6 AJD69067.1 - 0.064 13.5 0.1 0.18 12.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 AJD69067.1 - 0.13 12.5 0.7 0.62 10.3 0.7 2.0 1 1 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 AJD69067.1 - 0.27 10.6 0.6 2.9 7.3 0.1 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein OEP PF02321.18 AJD69068.1 - 7.3e-53 179.2 46.3 6.7e-27 94.5 26.8 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein MFS_1 PF07690.16 AJD69069.1 - 6.6e-50 170.0 44.3 6.6e-50 170.0 44.3 2.2 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 AJD69069.1 - 1.6e-07 30.5 25.5 0.00069 18.6 11.2 2.3 2 0 0 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 AJD69069.1 - 3.2e-06 26.3 17.6 3.2e-06 26.3 17.6 3.1 3 1 1 4 4 4 1 Sugar (and other) transporter VWA_CoxE PF05762.14 AJD69069.1 - 0.069 12.5 0.3 0.11 11.9 0.3 1.2 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein HlyD_D23 PF16576.5 AJD69070.1 - 9.3e-18 64.2 15.8 4.3e-14 52.3 6.6 2.5 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD69070.1 - 2.7e-17 63.4 7.5 1.2e-11 45.2 0.1 3.6 2 2 1 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD69070.1 - 4.4e-16 58.4 2.0 4.4e-16 58.4 2.0 4.0 4 0 0 4 4 4 1 Biotin-lipoyl like HlyD PF00529.20 AJD69070.1 - 3.4e-08 33.3 5.4 5.3e-08 32.6 5.4 1.4 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD69070.1 - 0.0062 16.3 0.1 0.03 14.2 0.1 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme Orf78 PF06024.12 AJD69070.1 - 0.63 10.4 2.8 1.1 9.7 0.0 2.5 3 1 0 3 3 2 0 Orf78 (ac78) BLOC1S3 PF15753.5 AJD69070.1 - 0.86 9.7 10.3 0.52 10.4 3.4 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 YqjK PF13997.6 AJD69070.1 - 1.4 9.2 6.6 0.22 11.8 2.0 2.0 2 0 0 2 2 2 0 YqjK-like protein Spc7 PF08317.11 AJD69070.1 - 3.6 6.4 11.3 7.9 5.3 11.3 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein Fez1 PF06818.15 AJD69070.1 - 5.9 7.3 11.9 0.47 10.9 7.0 1.6 2 0 0 2 2 2 0 Fez1 DUF4407 PF14362.6 AJD69070.1 - 8.9 5.6 24.1 0.094 12.0 16.4 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) SBP_bac_8 PF13416.6 AJD69071.1 - 1e-36 127.2 1.0 1.2e-36 127.0 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AJD69071.1 - 1.2e-24 87.1 0.5 2e-24 86.3 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AJD69071.1 - 2.8e-24 86.7 4.5 4e-24 86.1 4.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AJD69071.1 - 4.3e-09 36.5 0.2 1.3e-07 31.6 0.2 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Aminotran_3 PF00202.21 AJD69072.1 - 4.1e-89 299.1 0.0 5e-89 298.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Gln-synt_C PF00120.24 AJD69073.1 - 3.7e-105 351.7 0.0 4.5e-105 351.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 AJD69073.1 - 1.1e-06 28.3 0.2 2.3e-06 27.2 0.2 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Peptidase_C26 PF07722.13 AJD69074.1 - 1.1e-69 234.5 0.0 1.3e-69 234.3 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 AJD69074.1 - 1.1e-08 35.1 0.0 1.9e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Gln-synt_C PF00120.24 AJD69075.1 - 8.8e-98 327.5 0.0 1e-97 327.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain DAO PF01266.24 AJD69076.1 - 4.9e-49 167.8 9.7 5.7e-49 167.6 9.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD69076.1 - 5.4e-08 33.0 6.1 8.8e-06 25.9 2.8 3.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 AJD69076.1 - 2.6e-05 23.6 0.0 4.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AJD69076.1 - 0.0001 21.7 0.6 0.00015 21.1 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 AJD69076.1 - 0.00013 21.2 0.9 0.00021 20.6 0.9 1.2 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 AJD69076.1 - 0.00036 20.0 1.3 0.00053 19.4 1.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 AJD69076.1 - 0.00061 19.2 0.2 0.00085 18.7 0.2 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 AJD69076.1 - 0.001 19.6 0.6 0.0021 18.6 0.6 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AJD69076.1 - 0.0012 18.1 0.5 0.0025 17.1 0.5 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 AJD69076.1 - 0.0021 17.2 5.3 0.0027 16.9 4.5 1.5 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 AJD69076.1 - 0.0092 14.7 0.4 0.015 14.0 0.4 1.3 1 0 0 1 1 1 1 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 AJD69076.1 - 0.014 14.9 0.3 0.022 14.3 0.3 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 AJD69076.1 - 0.021 13.7 2.0 0.083 11.7 1.8 1.8 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 AJD69076.1 - 0.047 12.8 2.7 0.07 12.2 2.7 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 AJD69076.1 - 0.11 11.7 0.1 0.19 11.0 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GGDEF PF00990.21 AJD69077.1 - 2e-42 144.7 0.0 3.2e-42 144.0 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 AJD69077.1 - 4.7e-26 91.2 0.0 2.7e-20 72.6 0.0 2.7 2 1 0 2 2 2 2 Response regulator receiver domain GGDEF_2 PF17853.1 AJD69077.1 - 0.0014 18.9 1.3 0.0042 17.3 0.1 2.3 2 1 0 2 2 2 1 GGDEF-like domain Hemerythrin PF01814.23 AJD69078.1 - 4.6e-14 53.2 1.5 4.6e-14 53.2 1.5 1.3 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain DUF2209 PF09974.9 AJD69078.1 - 0.055 13.8 0.1 0.077 13.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2209) Peptidase_C71 PF12386.8 AJD69078.1 - 0.15 11.7 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Pseudomurein endo-isopeptidase Pei Sugar_tr PF00083.24 AJD69079.1 - 1.3e-24 86.9 23.6 1.4e-19 70.3 6.0 2.2 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 AJD69079.1 - 5.1e-24 84.9 83.3 2.3e-17 62.9 47.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_Mycoplasma PF07672.13 AJD69079.1 - 0.13 11.5 3.7 0.33 10.2 1.3 2.2 2 0 0 2 2 2 0 Mycoplasma MFS transporter ABC2_membrane_5 PF13346.6 AJD69079.1 - 7.2 6.1 14.5 0.15 11.6 6.6 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein HTH_IclR PF09339.10 AJD69080.1 - 0.0066 16.2 0.9 0.011 15.5 0.2 1.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain OST-HTH PF12872.7 AJD69080.1 - 0.028 14.2 0.0 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 OST-HTH/LOTUS domain Molybdopterin PF00384.22 AJD69081.1 - 3.6e-27 95.4 0.0 1.2e-26 93.7 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 AJD69081.1 - 2e-10 40.7 0.0 3.6e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FdhD-NarQ PF02634.15 AJD69082.1 - 3.5e-81 272.4 0.2 4.1e-81 272.1 0.2 1.0 1 0 0 1 1 1 1 FdhD/NarQ family YAcAr PF10686.9 AJD69082.1 - 0.11 12.5 2.5 0.22 11.5 0.9 2.3 2 1 0 2 2 2 0 YspA, cpYpsA-related SLOG family MFS_1 PF07690.16 AJD69083.1 - 3.3e-36 125.0 68.4 7.9e-36 123.7 62.7 2.9 1 1 2 3 3 3 3 Major Facilitator Superfamily Aminotran_3 PF00202.21 AJD69084.1 - 6.8e-92 308.2 0.0 7.8e-92 308.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AJD69084.1 - 0.0027 17.0 0.0 0.019 14.1 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AJD69084.1 - 0.035 13.4 0.0 0.065 12.5 0.0 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase bZIP_1 PF00170.21 AJD69085.1 - 0.0014 18.6 0.6 0.0014 18.6 0.6 2.2 2 0 0 2 2 2 1 bZIP transcription factor bZIP_2 PF07716.15 AJD69085.1 - 0.0042 17.1 2.2 0.0042 17.1 2.2 2.7 2 0 0 2 2 2 1 Basic region leucine zipper ZapB PF06005.12 AJD69085.1 - 0.0084 16.5 1.4 0.0084 16.5 1.4 2.4 2 0 0 2 2 2 1 Cell division protein ZapB DivIC PF04977.15 AJD69085.1 - 0.032 14.0 0.7 0.032 14.0 0.7 3.0 3 0 0 3 3 3 0 Septum formation initiator TSC22 PF01166.18 AJD69085.1 - 0.058 13.7 0.6 0.17 12.3 0.6 1.7 1 0 0 1 1 1 0 TSC-22/dip/bun family MAM1 PF10434.9 AJD69085.1 - 0.089 12.4 1.3 0.11 12.0 1.3 1.2 1 0 0 1 1 1 0 Monopolin complex protein MAM1 JIP_LZII PF16471.5 AJD69085.1 - 0.1 12.8 1.8 0.29 11.3 0.4 2.2 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II GIT_CC PF16559.5 AJD69085.1 - 0.11 12.4 0.3 0.32 10.9 0.3 1.8 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor APG6_N PF17675.1 AJD69085.1 - 0.11 13.0 5.2 0.28 11.7 5.2 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region HALZ PF02183.18 AJD69085.1 - 0.15 12.3 1.7 0.22 11.7 0.8 1.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper Spc7 PF08317.11 AJD69085.1 - 0.17 10.8 4.2 0.25 10.2 4.2 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Miff PF05644.11 AJD69085.1 - 0.21 11.2 6.0 0.3 10.7 6.0 1.2 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff Cluap1 PF10234.9 AJD69085.1 - 0.85 9.0 8.0 16 4.8 0.0 2.6 2 1 0 2 2 2 0 Clusterin-associated protein-1 DUF4140 PF13600.6 AJD69085.1 - 1.9 9.0 22.8 33 5.0 18.5 2.9 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) PRKG1_interact PF15898.5 AJD69085.1 - 6.5 7.7 8.6 1.3 9.9 3.8 2.3 2 1 2 4 4 3 0 cGMP-dependent protein kinase interacting domain DUF445 PF04286.12 AJD69086.1 - 8e-103 345.1 0.1 9.2e-103 344.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Response_reg PF00072.24 AJD69087.1 - 4.4e-46 155.6 0.1 1.3e-25 89.7 0.0 2.5 2 0 0 2 2 2 2 Response regulator receiver domain CHASE PF03924.13 AJD69087.1 - 6.7e-43 146.8 0.9 2.2e-41 141.8 0.4 2.8 2 0 0 2 2 2 1 CHASE domain HATPase_c PF02518.26 AJD69087.1 - 5.1e-30 104.3 0.1 1.2e-29 103.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 AJD69087.1 - 3.9e-28 97.8 0.0 1.6e-12 47.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 AJD69087.1 - 7.1e-26 90.4 0.0 1.5e-11 44.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 AJD69087.1 - 1.4e-22 80.0 4.8 9.6e-12 45.1 0.2 3.6 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 AJD69087.1 - 6.5e-20 70.9 1.2 1.9e-19 69.5 0.1 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 AJD69087.1 - 5.4e-15 55.0 0.0 3.7e-07 30.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 AJD69087.1 - 7.5e-09 35.8 0.0 4.9e-05 23.5 0.0 3.1 2 1 0 2 2 2 2 PAS fold Hpt PF01627.23 AJD69087.1 - 4.4e-07 30.1 0.4 4.4e-07 30.1 0.4 3.2 3 0 0 3 3 3 1 Hpt domain Rep_fac-A_C PF08646.10 AJD69087.1 - 0.034 13.9 0.1 0.41 10.4 0.0 2.1 2 0 0 2 2 2 0 Replication factor-A C terminal domain Glycos_transf_1 PF00534.20 AJD69087.1 - 0.086 12.4 0.0 5.6 6.5 0.0 3.0 3 0 0 3 3 3 0 Glycosyl transferases group 1 Response_reg PF00072.24 AJD69088.1 - 3.2e-23 82.0 0.0 5.1e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HD_5 PF13487.6 AJD69088.1 - 2.8e-18 65.9 0.1 6.7e-18 64.7 0.1 1.7 1 0 0 1 1 1 1 HD domain HD PF01966.22 AJD69088.1 - 2.9e-15 56.6 0.1 4.8e-15 55.9 0.1 1.4 1 0 0 1 1 1 1 HD domain MFS_1 PF07690.16 AJD69089.1 - 4.2e-53 180.5 39.3 4.2e-53 180.5 39.3 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily TRI12 PF06609.13 AJD69089.1 - 5e-08 31.8 2.6 8.6e-08 31.1 2.6 1.3 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.13 AJD69089.1 - 2.9e-07 29.3 21.8 0.0007 18.1 7.9 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 AJD69089.1 - 0.021 13.1 4.4 0.043 12.1 0.1 2.6 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.6 AJD69089.1 - 0.032 12.8 27.5 0.026 13.1 5.1 3.1 2 2 1 3 3 3 0 MFS/sugar transport protein DUF2621 PF11084.8 AJD69089.1 - 0.06 13.3 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) Bac_GDH PF05088.12 AJD69090.1 - 0 2160.0 0.0 0 2159.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase GDH_N PF12466.8 AJD69090.1 - 5.9e-45 151.4 10.8 1.1e-44 150.6 5.0 3.3 3 0 0 3 3 3 1 Glutamate dehydrogenase N terminal ELFV_dehydrog PF00208.21 AJD69090.1 - 0.033 13.9 0.3 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RsdA_SigD_bd PF16751.5 AJD69090.1 - 0.88 9.9 3.5 0.77 10.1 0.5 2.4 2 0 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region TetR_C_7 PF14246.6 AJD69091.1 - 2.8e-19 69.3 1.5 3.8e-19 68.9 1.5 1.2 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 AJD69091.1 - 8.2e-07 28.7 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 AJD69091.1 - 9.6e-07 29.1 0.7 1.9e-06 28.1 0.7 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_22 PF13309.6 AJD69091.1 - 0.039 14.0 0.1 0.065 13.3 0.1 1.4 1 0 0 1 1 1 0 HTH domain TetR_C_16 PF17920.1 AJD69091.1 - 0.054 13.7 0.3 0.39 11.0 0.1 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 AJD69091.1 - 0.099 12.9 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HlyD_3 PF13437.6 AJD69092.1 - 1e-13 51.9 5.6 9.7e-07 29.5 0.2 3.9 3 2 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 AJD69092.1 - 4.1e-13 49.1 1.6 2.5e-12 46.5 1.6 2.0 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AJD69092.1 - 1e-08 34.9 0.3 1e-08 34.9 0.3 2.5 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD PF00529.20 AJD69092.1 - 0.0031 17.4 0.4 0.009 15.9 0.4 1.8 1 0 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD69092.1 - 0.035 13.9 0.0 0.1 12.4 0.0 1.8 1 0 0 1 1 1 0 Biotin-requiring enzyme ACR_tran PF00873.19 AJD69093.1 - 0 1155.0 15.4 0 1154.8 15.4 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD69093.1 - 2.8e-11 42.9 32.5 1.2e-07 31.0 14.1 2.5 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 AJD69093.1 - 0.0074 15.7 31.8 0.091 12.1 13.8 2.6 2 0 0 2 2 2 2 Protein export membrane protein RRM_occluded PF16842.5 AJD69093.1 - 0.14 12.1 0.1 0.54 10.2 0.0 2.0 2 0 0 2 2 2 0 Occluded RNA-recognition motif RhodobacterPufX PF11511.8 AJD69093.1 - 6.4 6.5 8.9 25 4.6 0.1 4.6 4 0 0 4 4 4 0 Intrinsic membrane protein PufX Peripla_BP_3 PF13377.6 AJD69094.1 - 9.4e-35 120.4 1.3 3.7e-34 118.5 0.4 2.1 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD69094.1 - 1.7e-24 86.7 0.0 2.2e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD69094.1 - 5.9e-15 54.8 2.7 7.5e-15 54.5 0.7 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD69094.1 - 2.1e-11 43.9 0.0 3e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain AMP-binding PF00501.28 AJD69094.1 - 0.0084 14.7 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme HTH_38 PF13936.6 AJD69094.1 - 0.018 14.8 0.7 0.088 12.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 AJD69094.1 - 0.043 13.6 0.0 0.15 11.9 0.0 2.0 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 AJD69094.1 - 0.066 13.1 0.3 0.39 10.6 0.1 2.4 2 0 0 2 2 2 0 MarR family HTH_3 PF01381.22 AJD69094.1 - 0.072 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 AJD69094.1 - 0.088 12.2 0.3 0.22 11.0 0.3 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 AJD69094.1 - 0.098 12.5 1.1 2.4 8.0 0.1 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AJD69094.1 - 0.14 11.8 0.1 0.32 10.6 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_32 PF13565.6 AJD69094.1 - 0.52 11.0 2.0 3.8 8.2 0.1 2.9 2 1 1 3 3 3 0 Homeodomain-like domain PEP-utilizers_C PF02896.18 AJD69095.1 - 4.5e-106 354.3 0.0 6.4e-106 353.7 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PTS_EIIA_2 PF00359.22 AJD69095.1 - 4.4e-28 98.0 0.0 1.7e-27 96.1 0.0 2.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS-HPr PF00381.19 AJD69095.1 - 1.1e-20 73.6 0.3 3.5e-20 72.0 0.0 2.0 2 0 0 2 2 2 1 PTS HPr component phosphorylation site PEP-utilizers PF00391.23 AJD69095.1 - 1.5e-20 72.7 0.2 5.2e-20 70.9 0.2 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 AJD69095.1 - 1.7e-19 70.1 0.2 1.7e-19 70.1 0.2 3.3 4 0 0 4 4 4 1 PEP-utilising enzyme, N-terminal SRP_SPB PF02978.19 AJD69095.1 - 0.22 12.2 0.0 0.46 11.1 0.0 1.5 1 0 0 1 1 1 0 Signal peptide binding domain PfkB PF00294.24 AJD69096.1 - 9e-57 192.7 0.1 1.1e-56 192.4 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 AJD69096.1 - 5.4e-05 22.7 0.0 7.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PTS_IIB PF02302.17 AJD69097.1 - 1.6e-23 83.2 1.2 4.3e-18 65.8 0.1 2.3 2 0 0 2 2 2 2 PTS system, Lactose/Cellobiose specific IIB subunit OprB PF04966.12 AJD69098.1 - 8e-88 295.4 11.4 9.1e-88 295.2 11.4 1.0 1 0 0 1 1 1 1 Carbohydrate-selective porin, OprB family Phasin PF05597.11 AJD69099.1 - 0.00075 19.5 5.6 0.0077 16.2 4.5 2.6 2 1 1 3 3 3 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Flagellar_rod PF05149.12 AJD69099.1 - 0.0072 15.8 10.8 0.011 15.3 4.7 2.2 1 1 1 2 2 2 1 Paraflagellar rod protein PLC-beta_C PF08703.10 AJD69099.1 - 0.012 15.6 3.6 0.012 15.6 3.6 1.9 1 1 1 2 2 2 0 PLC-beta C terminal DUF4407 PF14362.6 AJD69099.1 - 0.018 14.4 9.3 0.3 10.4 9.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Syntaxin_2 PF14523.6 AJD69099.1 - 0.027 14.8 5.3 0.047 14.1 5.3 1.4 1 0 0 1 1 1 0 Syntaxin-like protein Prominin PF05478.11 AJD69099.1 - 0.054 11.4 1.6 0.072 11.0 1.6 1.2 1 0 0 1 1 1 0 Prominin ISG65-75 PF11727.8 AJD69099.1 - 0.063 12.5 5.1 0.09 12.0 5.1 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein LemA PF04011.12 AJD69099.1 - 0.075 12.9 5.3 0.12 12.2 5.3 1.4 1 0 0 1 1 1 0 LemA family CENP-K PF11802.8 AJD69099.1 - 0.086 12.4 5.7 0.12 12.0 5.7 1.1 1 0 0 1 1 1 0 Centromere-associated protein K Pox_A11 PF05061.13 AJD69099.1 - 0.13 11.5 1.2 0.17 11.2 1.2 1.1 1 0 0 1 1 1 0 Poxvirus A11 Protein Spc7 PF08317.11 AJD69099.1 - 0.19 10.6 10.6 0.17 10.8 9.5 1.4 2 0 0 2 2 2 0 Spc7 kinetochore protein TACC_C PF05010.14 AJD69099.1 - 0.4 10.4 11.0 0.32 10.8 4.8 2.2 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal UPF0242 PF06785.11 AJD69099.1 - 0.44 10.6 6.0 0.86 9.7 6.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus LMBR1 PF04791.16 AJD69099.1 - 0.45 9.4 1.1 0.54 9.1 1.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein CRISPR_Cse1 PF09481.10 AJD69099.1 - 0.51 9.4 6.8 0.62 9.1 6.8 1.1 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) DivIVA PF05103.13 AJD69099.1 - 0.6 10.2 13.6 1.2 9.2 12.3 2.0 2 1 0 2 2 1 0 DivIVA protein NifU_N PF01592.16 AJD69099.1 - 0.73 10.0 3.7 0.31 11.2 0.4 2.1 2 1 1 3 3 3 0 NifU-like N terminal domain TAF6_C PF07571.13 AJD69099.1 - 0.74 10.2 4.9 10 6.5 0.1 3.0 1 1 1 2 2 2 0 TAF6 C-terminal HEAT repeat domain ApoLp-III PF07464.11 AJD69099.1 - 0.88 9.7 12.7 0.85 9.7 7.1 2.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Pex19 PF04614.12 AJD69099.1 - 0.93 9.2 8.4 1.6 8.5 8.4 1.4 1 0 0 1 1 1 0 Pex19 protein family KASH_CCD PF14662.6 AJD69099.1 - 1 9.2 12.3 7.7 6.3 12.3 2.0 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH DivIC PF04977.15 AJD69099.1 - 1.4 8.7 5.9 4.3 7.2 1.3 3.0 3 0 0 3 3 3 0 Septum formation initiator WXG100 PF06013.12 AJD69099.1 - 2 8.7 14.7 3.3 8.0 2.4 3.3 3 1 0 3 3 3 0 Proteins of 100 residues with WXG FliD_C PF07195.12 AJD69099.1 - 2.4 7.5 8.1 6.8 6.0 0.5 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus KxDL PF10241.9 AJD69099.1 - 4.8 7.5 12.9 23 5.4 5.4 2.9 2 1 1 3 3 2 0 Uncharacterized conserved protein ABC_tran_CTD PF16326.5 AJD69099.1 - 5.3 7.4 11.5 0.57 10.5 1.9 3.2 2 1 1 3 3 3 0 ABC transporter C-terminal domain Baculo_F PF12259.8 AJD69099.1 - 6.6 5.1 7.2 8 4.8 7.2 1.1 1 0 0 1 1 1 0 Baculovirus F protein COG2 PF06148.11 AJD69099.1 - 7.8 6.6 8.7 20 5.3 3.8 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CLZ PF16526.5 AJD69099.1 - 8.2 6.9 10.6 22 5.5 1.9 2.9 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1629 PF07791.11 AJD69103.1 - 2.9e-48 163.1 0.0 4.2e-48 162.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) SecD_SecF PF02355.16 AJD69105.1 - 6.7e-48 162.6 8.5 1.4e-47 161.5 8.5 1.5 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 AJD69105.1 - 1.1e-07 31.1 0.5 2.4e-07 30.0 0.5 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif LytR_C PF13399.6 AJD69105.1 - 0.01 16.8 0.2 0.034 15.1 0.2 1.9 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator DUF494 PF04361.13 AJD69105.1 - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF494) DUF1071 PF06378.11 AJD69105.1 - 0.18 11.4 0.0 0.98 9.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1071) SecD-TM1 PF13721.6 AJD69106.1 - 9.6e-36 122.4 4.0 1.3e-31 109.1 0.0 4.0 3 1 1 4 4 4 2 SecD export protein N-terminal TM region SecD_SecF PF02355.16 AJD69106.1 - 4.7e-21 75.0 9.1 8.4e-21 74.2 9.1 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 AJD69106.1 - 4.1e-09 35.8 19.0 8e-09 34.9 19.0 1.4 1 0 0 1 1 1 1 MMPL family ACR_tran PF00873.19 AJD69106.1 - 1.1e-07 30.0 6.7 1.1e-07 30.0 6.7 1.5 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family Sec_GG PF07549.14 AJD69106.1 - 2.9e-06 26.6 0.1 7.9e-06 25.2 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif LPG_synthase_TM PF03706.13 AJD69106.1 - 0.00022 20.9 2.1 0.00022 20.9 2.1 2.5 3 0 0 3 3 3 1 Lysylphosphatidylglycerol synthase TM region YajC PF02699.15 AJD69107.1 - 1.9e-28 98.1 0.2 2.4e-28 97.8 0.2 1.1 1 0 0 1 1 1 1 Preprotein translocase subunit Hint_2 PF13403.6 AJD69107.1 - 0.066 13.5 0.1 0.09 13.1 0.1 1.1 1 0 0 1 1 1 0 Hint domain Orf78 PF06024.12 AJD69107.1 - 0.098 13.0 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Orf78 (ac78) TGT PF01702.18 AJD69108.1 - 3.9e-145 483.4 0.0 4.8e-145 483.1 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Arm-DNA-bind_2 PF12167.8 AJD69108.1 - 0.071 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Arm DNA-binding domain Queuosine_synth PF02547.15 AJD69109.1 - 1.7e-129 431.6 0.0 1.9e-129 431.4 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein HTH_24 PF13412.6 AJD69110.1 - 1e-14 53.8 0.7 1.5e-14 53.2 0.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AJD69110.1 - 4.8e-14 51.9 3.0 7.5e-14 51.3 3.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 AJD69110.1 - 1e-13 51.0 0.0 1.8e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 AJD69110.1 - 5.8e-08 32.5 0.3 1.1e-07 31.6 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AJD69110.1 - 5e-07 29.7 0.3 1e-06 28.7 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 AJD69110.1 - 1.5e-06 28.0 0.5 2.7e-06 27.2 0.5 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 AJD69110.1 - 4.5e-06 26.3 0.4 4.5e-06 26.3 0.4 1.6 2 0 0 2 2 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 AJD69110.1 - 5.1e-06 26.4 0.4 9.9e-06 25.5 0.4 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 AJD69110.1 - 2e-05 24.5 0.9 5.8e-05 23.0 0.5 2.0 1 1 1 2 2 2 1 Winged helix-turn helix MarR PF01047.22 AJD69110.1 - 2e-05 24.4 0.1 3.6e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 AJD69110.1 - 5.5e-05 23.0 0.0 8.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 AJD69110.1 - 5.6e-05 23.2 0.0 8.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 AJD69110.1 - 0.00018 21.2 0.9 0.00038 20.2 0.9 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 AJD69110.1 - 0.00019 21.2 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 AJD69110.1 - 0.00024 20.7 0.1 0.00043 19.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 AJD69110.1 - 0.00043 20.3 0.1 0.00091 19.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 AJD69110.1 - 0.00063 20.2 0.4 0.0015 19.0 0.2 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_30 PF13556.6 AJD69110.1 - 0.00097 18.9 0.1 0.0017 18.1 0.1 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain LexA_DNA_bind PF01726.16 AJD69110.1 - 0.0011 18.6 0.1 0.0022 17.7 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_41 PF14502.6 AJD69110.1 - 0.0018 18.0 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 AJD69110.1 - 0.0022 17.8 0.1 0.005 16.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_31 PF13560.6 AJD69110.1 - 0.0029 17.9 5.0 0.087 13.2 5.0 2.4 1 1 0 1 1 1 1 Helix-turn-helix domain FtsK_gamma PF09397.10 AJD69110.1 - 0.0043 16.8 0.1 0.0093 15.7 0.1 1.5 1 0 0 1 1 1 1 Ftsk gamma domain HTH_Mga PF08280.11 AJD69110.1 - 0.005 16.8 0.0 0.0082 16.1 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.6 AJD69110.1 - 0.006 16.3 0.5 0.011 15.4 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD69110.1 - 0.0073 15.8 0.3 0.017 14.6 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_8 PF02954.19 AJD69110.1 - 0.0075 16.0 0.4 0.015 15.0 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_DeoR PF08220.12 AJD69110.1 - 0.0078 15.9 0.4 0.014 15.1 0.4 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD69110.1 - 0.01 15.2 0.1 0.019 14.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 AJD69110.1 - 0.011 15.2 0.1 0.037 13.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.12 AJD69110.1 - 0.015 15.1 0.2 0.032 14.0 0.2 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_50 PF18024.1 AJD69110.1 - 0.018 14.7 0.2 0.043 13.4 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DprA_WH PF17782.1 AJD69110.1 - 0.02 15.0 0.1 0.035 14.2 0.1 1.4 1 0 0 1 1 1 0 DprA winged helix domain Rrf2 PF02082.20 AJD69110.1 - 0.02 15.2 0.1 0.068 13.5 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_7 PF02796.15 AJD69110.1 - 0.035 14.2 0.1 0.068 13.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF977 PF06163.11 AJD69110.1 - 0.042 13.8 0.7 0.17 11.9 0.1 2.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) FaeA PF04703.12 AJD69110.1 - 0.046 14.1 0.1 0.074 13.4 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein FeoC PF09012.10 AJD69110.1 - 0.047 13.8 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.21 AJD69110.1 - 0.055 13.1 0.2 0.14 11.8 0.2 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family NapD PF03927.13 AJD69110.1 - 0.057 13.5 0.1 0.14 12.2 0.1 1.7 1 1 0 1 1 1 0 NapD protein Nuc_N PF14448.6 AJD69110.1 - 0.066 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Nuclease N terminal Replic_Relax PF13814.6 AJD69110.1 - 0.083 13.0 0.6 0.11 12.6 0.6 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_32 PF13565.6 AJD69110.1 - 0.091 13.4 1.1 0.18 12.4 1.1 1.6 1 1 0 1 1 1 0 Homeodomain-like domain HTH_17 PF12728.7 AJD69110.1 - 0.1 12.8 0.2 0.24 11.6 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 AJD69110.1 - 0.1 12.2 0.4 0.21 11.2 0.1 1.7 2 0 0 2 2 1 0 CodY helix-turn-helix domain EAP30 PF04157.16 AJD69110.1 - 0.1 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family RPA_C PF08784.11 AJD69110.1 - 0.11 13.2 0.0 0.17 12.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_19 PF12844.7 AJD69110.1 - 0.11 12.5 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LPD22 PF18834.1 AJD69110.1 - 0.12 12.6 0.1 0.39 11.0 0.1 1.9 2 1 0 2 2 2 0 Large polyvalent protein associated domain 22 Terminase_5 PF06056.12 AJD69110.1 - 0.13 12.2 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Phage_GPA PF05840.13 AJD69110.1 - 0.16 11.0 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage replication gene A protein (GPA) Aminotran_3 PF00202.21 AJD69111.1 - 4.4e-36 124.4 0.0 8.9e-36 123.4 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-III Gly_transf_sug PF04488.15 AJD69112.1 - 7.9e-08 32.8 0.0 1.2e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase sugar-binding region containing DXD motif Metallophos PF00149.28 AJD69114.1 - 4.3e-15 56.8 0.1 6.2e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Pur_ac_phosph_N PF16656.5 AJD69114.1 - 1.7e-14 54.2 0.0 3e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain fn3 PF00041.21 AJD69114.1 - 0.015 15.6 0.0 0.055 13.8 0.0 1.9 1 1 0 1 1 1 0 Fibronectin type III domain PhoD_N PF16655.5 AJD69114.1 - 0.017 15.6 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 PhoD-like phosphatase, N-terminal domain Phytase PF02333.15 AJD69115.1 - 1e-07 31.3 1.5 1.4e-05 24.3 0.8 2.1 2 0 0 2 2 2 2 Phytase NHL PF01436.21 AJD69115.1 - 0.0034 17.3 2.2 0.0064 16.5 0.5 2.4 2 0 0 2 2 2 1 NHL repeat TonB_dep_Rec PF00593.24 AJD69116.1 - 1.6e-39 137.1 28.9 1.6e-39 137.1 28.9 2.2 1 1 1 2 2 2 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD69116.1 - 3.8e-25 88.7 5.8 3.9e-24 85.4 1.4 2.3 2 0 0 2 2 2 2 Outer membrane protein beta-barrel family Plug PF07715.15 AJD69116.1 - 1.3e-16 61.1 2.5 4.5e-16 59.3 0.6 2.6 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain CarboxypepD_reg PF13620.6 AJD69116.1 - 0.11 12.7 6.0 0.2 12.0 0.1 3.4 4 0 0 4 4 4 0 Carboxypeptidase regulatory-like domain UPRTase PF14681.6 AJD69117.1 - 2e-63 213.6 0.0 2.5e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 AJD69117.1 - 7.4e-10 38.6 0.1 1.1e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Glyco_hydro_9 PF00759.19 AJD69118.1 - 8.8e-92 308.7 7.5 1e-91 308.4 7.5 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 9 CelD_N PF02927.14 AJD69118.1 - 5.5e-18 65.6 0.0 1.1e-17 64.7 0.0 1.5 1 0 0 1 1 1 1 Cellulase N-terminal ig-like domain G_glu_transpept PF01019.21 AJD69119.1 - 1.2e-165 552.2 0.0 1.4e-165 552.0 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Fer4 PF00037.27 AJD69120.1 - 3.3e-08 33.0 21.4 5.8e-06 25.9 3.3 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_7 PF12838.7 AJD69120.1 - 5.1e-07 30.2 14.3 7.1e-06 26.5 15.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AJD69120.1 - 1.5e-05 24.8 14.6 0.0071 16.4 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 AJD69120.1 - 7.6e-05 23.6 13.8 0.0018 19.2 5.8 2.2 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 AJD69120.1 - 0.00014 21.9 14.2 0.00059 19.9 14.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain GF_recep_IV PF14843.6 AJD69120.1 - 0.00019 21.2 6.8 0.00022 21.0 6.8 1.1 1 0 0 1 1 1 1 Growth factor receptor domain IV Fer4_4 PF12800.7 AJD69120.1 - 0.00034 20.9 15.6 0.0015 18.9 2.1 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 AJD69120.1 - 0.00045 20.2 21.6 0.01 15.9 5.5 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 AJD69120.1 - 0.0014 18.6 14.3 0.0017 18.4 12.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 AJD69120.1 - 0.0034 17.5 18.9 0.0079 16.3 18.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 AJD69120.1 - 0.54 11.3 22.9 2.4 9.3 8.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 AJD69120.1 - 1.9 9.1 14.8 0.33 11.5 4.4 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain CTP_transf_like PF01467.26 AJD69123.1 - 4e-22 79.0 0.0 4.7e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Cons_hypoth95 PF03602.15 AJD69124.1 - 2.8e-51 173.7 0.0 3.2e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.20 AJD69124.1 - 7.4e-06 25.2 0.0 9.9e-06 24.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 AJD69124.1 - 3.3e-05 23.7 0.0 4.1e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AJD69124.1 - 8.2e-05 22.2 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 AJD69124.1 - 0.00013 22.6 0.0 0.00018 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MethyltransfD12 PF02086.15 AJD69124.1 - 0.0028 17.4 0.0 0.75 9.4 0.0 2.1 2 0 0 2 2 2 2 D12 class N6 adenine-specific DNA methyltransferase Met_10 PF02475.16 AJD69124.1 - 0.024 14.4 0.0 0.029 14.1 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 AJD69124.1 - 0.066 12.6 0.0 0.088 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 AJD69124.1 - 0.081 12.7 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SAM_MT PF04445.13 AJD69124.1 - 0.088 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase HHH_8 PF14716.6 AJD69124.1 - 0.15 12.5 0.1 0.38 11.2 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain HSP90 PF00183.18 AJD69125.1 - 1.7e-126 423.2 0.0 1.6e-124 416.7 0.0 2.0 1 1 1 2 2 2 2 Hsp90 protein HATPase_c PF02518.26 AJD69125.1 - 2.1e-12 47.5 0.0 3.8e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 AJD69125.1 - 1.5e-10 41.1 0.0 2.6e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RHS_repeat PF05593.14 AJD69126.1 - 4.4e-62 205.9 111.7 3.9e-09 36.8 4.4 22.1 14 6 10 25 25 25 21 RHS Repeat DUF4329 PF14220.6 AJD69126.1 - 5.4e-20 71.5 0.1 8e-18 64.5 0.0 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF4329) RHS PF03527.14 AJD69126.1 - 0.0071 16.1 2.2 0.13 12.0 0.0 3.8 4 0 0 4 4 4 1 RHS protein Glyco_hydro_127 PF07944.12 AJD69128.1 - 5.8e-167 556.3 0.0 7.1e-167 556.0 0.0 1.1 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 TonB_dep_Rec PF00593.24 AJD69129.1 - 4.2e-48 165.4 36.7 4.2e-48 165.4 36.7 2.1 2 0 0 2 2 2 2 TonB dependent receptor Plug PF07715.15 AJD69129.1 - 3.1e-26 92.1 4.0 3.1e-26 92.1 4.0 2.7 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain DPPIV_N PF00930.21 AJD69130.1 - 2.5e-46 158.1 0.0 8.1e-46 156.4 0.0 1.7 1 1 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9 PF00326.21 AJD69130.1 - 8.5e-44 149.6 0.9 1.6e-43 148.7 0.9 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 AJD69130.1 - 0.0002 21.1 1.2 0.00047 19.8 1.2 1.7 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 AJD69130.1 - 0.00054 19.8 0.1 2.8 8.0 0.0 4.6 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Esterase PF00756.20 AJD69130.1 - 0.0024 17.6 0.3 0.0047 16.6 0.3 1.5 1 0 0 1 1 1 1 Putative esterase BAAT_C PF08840.11 AJD69130.1 - 0.042 13.8 0.0 2.8 7.8 0.0 2.4 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 AJD69130.1 - 0.11 12.1 0.0 0.21 11.1 0.0 1.5 1 1 0 1 1 1 0 Dienelactone hydrolase family Glyco_hydro_43 PF04616.14 AJD69131.1 - 1.7e-39 135.8 0.4 2.7e-39 135.2 0.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 F5_F8_type_C PF00754.25 AJD69131.1 - 4e-06 27.0 0.3 1.2e-05 25.4 0.2 1.8 2 0 0 2 2 2 1 F5/8 type C domain Big_4 PF07532.11 AJD69132.1 - 9.8e-23 79.7 1.5 7.7e-11 41.6 0.3 3.5 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 4) F5_F8_type_C PF00754.25 AJD69132.1 - 3.4e-13 49.8 1.6 2.3e-07 31.0 0.1 3.5 2 1 0 2 2 2 2 F5/8 type C domain Bac_rhamnosid6H PF17389.2 AJD69132.1 - 0.003 16.9 0.4 0.0055 16.0 0.4 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain EccE PF11203.8 AJD69132.1 - 5.2 7.5 9.9 0.68 10.3 2.2 2.9 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE TonB_dep_Rec PF00593.24 AJD69133.1 - 6.2e-37 128.6 31.3 6.2e-37 128.6 31.3 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69133.1 - 1.6e-23 83.4 3.1 4.5e-23 81.9 1.3 2.5 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain DUF3375 PF11855.8 AJD69134.1 - 0.048 12.6 0.0 0.082 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) UCR_Fe-S_N PF10399.9 AJD69134.1 - 0.12 11.8 3.9 0.31 10.4 3.9 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Pro-kuma_activ PF09286.11 AJD69135.1 - 1.1e-14 54.9 0.0 1.6e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 AJD69135.1 - 5.1e-11 42.4 0.4 9.2e-11 41.5 0.4 1.3 1 0 0 1 1 1 1 Subtilase family DUF393 PF04134.12 AJD69135.1 - 0.12 13.7 0.2 0.62 11.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF393 Flg_bbr_C PF06429.13 AJD69138.1 - 0.015 15.4 0.7 0.032 14.4 0.7 1.9 1 1 0 1 1 1 0 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 AJD69138.1 - 4.3 7.4 10.9 0.22 11.5 3.8 2.4 2 1 0 2 2 2 0 Flagella basal body rod protein DUF5597 PF18120.1 AJD69139.1 - 3.1e-41 140.6 0.1 6.8e-41 139.5 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5597) Glyco_hydro_35 PF01301.19 AJD69139.1 - 1.3e-08 34.8 0.0 2.9e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 AJD69139.1 - 7.6e-06 25.5 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase Cellulase PF00150.18 AJD69139.1 - 0.0054 16.2 0.0 0.68 9.3 0.0 2.3 2 0 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) DPPIV_N PF00930.21 AJD69140.1 - 3.7e-67 226.6 0.0 9.2e-67 225.3 0.0 1.5 1 1 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9 PF00326.21 AJD69140.1 - 5.4e-50 169.8 0.5 8.9e-50 169.1 0.5 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 AJD69140.1 - 0.00011 21.8 0.1 0.00031 20.4 0.1 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 AJD69140.1 - 0.0003 20.5 3.1 0.00068 19.3 1.8 2.1 2 1 1 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 AJD69140.1 - 0.0091 15.7 1.4 0.042 13.5 0.5 2.5 2 1 0 2 2 2 1 Putative esterase Hydrolase_4 PF12146.8 AJD69140.1 - 0.018 14.3 0.2 2.1 7.6 0.0 2.3 1 1 1 2 2 2 0 Serine aminopeptidase, S33 BAAT_C PF08840.11 AJD69140.1 - 0.13 12.2 0.0 1.7 8.5 0.0 2.3 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.13 AJD69140.1 - 0.18 11.4 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) AA_permease_2 PF13520.6 AJD69141.1 - 2.3e-42 145.3 39.3 2.3e-42 145.3 39.3 1.6 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD69141.1 - 1.8e-20 73.0 32.0 1.8e-20 73.0 32.0 1.8 2 0 0 2 2 2 1 Amino acid permease Spore_permease PF03845.13 AJD69141.1 - 0.002 17.0 13.7 0.002 17.0 13.7 2.4 2 1 0 2 2 2 1 Spore germination protein DUF885 PF05960.11 AJD69142.1 - 1.2e-151 507.0 12.8 1.6e-151 506.6 12.8 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) DUF2653 PF10850.8 AJD69142.1 - 0.18 12.0 0.2 0.66 10.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2653) DUF885 PF05960.11 AJD69143.1 - 1.4e-161 539.8 9.4 1.6e-161 539.6 9.4 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) Peptidase_M24 PF00557.24 AJD69144.1 - 2.4e-48 164.6 0.3 4.9e-48 163.6 0.2 1.5 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.18 AJD69144.1 - 4.1e-16 59.8 0.0 7.3e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HydF_tetramer PF18133.1 AJD69144.1 - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Hydrogen maturase F tetramerization domain Aldedh PF00171.22 AJD69145.1 - 9e-44 149.7 1.6 1.2e-43 149.4 1.6 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DHDPS PF00701.22 AJD69146.1 - 1.5e-58 197.9 0.0 1.8e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family WHIM1 PF15612.6 AJD69146.1 - 0.0081 15.7 0.2 0.089 12.4 0.0 2.3 2 0 0 2 2 2 1 WSTF, HB1, Itc1p, MBD9 motif 1 ThiG PF05690.14 AJD69146.1 - 0.0082 15.5 0.8 0.086 12.1 0.6 2.1 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG Pyr_redox_2 PF07992.14 AJD69147.1 - 1.4e-30 106.5 0.4 1.9e-30 106.1 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD69147.1 - 4.9e-08 33.1 9.5 2e-07 31.2 0.4 3.5 2 1 1 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 AJD69147.1 - 2.9e-07 30.1 2.6 2.8e-05 23.5 0.4 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 AJD69147.1 - 2.2e-06 26.7 1.4 2e-05 23.5 0.3 2.6 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 AJD69147.1 - 2.4e-06 27.2 3.7 2.4e-06 27.2 3.7 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD69147.1 - 6.8e-06 25.4 3.1 6.8e-06 25.4 3.1 3.1 4 0 0 4 4 4 1 FAD binding domain NAD_binding_7 PF13241.6 AJD69147.1 - 2.2e-05 24.8 0.2 0.067 13.6 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Thi4 PF01946.17 AJD69147.1 - 5.7e-05 22.5 0.7 0.00016 21.0 0.2 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 AJD69147.1 - 0.00011 22.7 0.9 0.11 13.1 0.3 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AJD69147.1 - 0.00018 20.9 1.1 0.00018 20.9 1.1 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 AJD69147.1 - 0.0002 20.6 11.8 0.0035 16.5 0.8 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A SO_alpha_A3 PF17806.1 AJD69147.1 - 0.00077 19.8 0.0 0.0023 18.2 0.0 1.8 2 0 0 2 2 1 1 Sarcosine oxidase A3 domain NAD_binding_9 PF13454.6 AJD69147.1 - 0.00088 19.3 0.8 0.0035 17.3 0.3 2.3 1 1 1 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.24 AJD69147.1 - 0.0013 18.4 3.6 0.0013 18.4 3.6 2.9 2 2 1 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 AJD69147.1 - 0.0013 17.9 0.4 0.0013 17.9 0.4 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 AJD69147.1 - 0.0018 17.6 2.2 0.011 15.1 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 AJD69147.1 - 0.021 15.3 1.1 0.51 10.8 0.1 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain Amino_oxidase PF01593.24 AJD69147.1 - 0.037 13.3 0.5 0.037 13.3 0.5 1.5 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase LpxI_N PF17930.1 AJD69147.1 - 0.04 13.8 2.2 2 8.3 0.1 2.8 3 0 0 3 3 3 0 LpxI N-terminal domain Oxidored_nitro PF00148.19 AJD69147.1 - 0.047 12.4 0.4 0.16 10.6 0.0 1.8 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.19 AJD69147.1 - 0.1 11.9 0.2 10 5.4 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Staph_opine_DH PF10100.9 AJD69147.1 - 0.12 11.0 1.3 0.41 9.2 0.1 2.0 2 0 0 2 2 2 0 Staphylopine dehydrogenase AdoHcyase_NAD PF00670.21 AJD69147.1 - 0.19 11.8 0.6 17 5.5 0.0 2.7 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 AJD69147.1 - 1.3 8.9 3.5 0.81 9.5 0.5 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer2_4 PF13510.6 AJD69148.1 - 6.2e-22 77.4 3.7 6.8e-22 77.3 3.7 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 AJD69148.1 - 0.017 14.9 6.9 0.029 14.2 6.9 1.4 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DUF4254 PF14063.6 AJD69148.1 - 0.033 14.0 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4254) DAO PF01266.24 AJD69149.1 - 8.9e-59 199.8 8.8 1e-58 199.6 8.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 AJD69149.1 - 4.7e-07 29.5 2.0 6.5e-07 29.1 2.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD69149.1 - 2.1e-06 27.1 6.8 2.6e-06 26.8 6.0 1.3 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AJD69149.1 - 0.0001 22.4 1.5 0.00033 20.8 1.5 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 AJD69149.1 - 0.0031 16.8 0.3 0.0055 16.0 0.3 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 AJD69149.1 - 0.0052 16.0 0.9 0.014 14.7 1.1 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 AJD69149.1 - 0.041 12.9 5.5 0.3 10.1 3.9 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.21 AJD69149.1 - 0.05 13.7 0.5 0.096 12.7 0.5 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.27 AJD69149.1 - 0.093 13.3 2.1 0.17 12.5 2.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AJD69149.1 - 0.11 12.4 2.7 0.17 11.8 2.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 AJD69149.1 - 0.15 10.7 3.7 0.23 10.1 3.7 1.2 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.22 AJD69149.1 - 0.27 10.2 3.7 0.42 9.6 3.7 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 AJD69149.1 - 0.31 10.3 3.4 0.56 9.5 3.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pro_racemase PF05544.11 AJD69150.1 - 1.4e-107 359.5 0.1 1.6e-107 359.4 0.1 1.0 1 0 0 1 1 1 1 Proline racemase PhzC-PhzF PF02567.16 AJD69150.1 - 0.00046 19.8 0.0 0.001 18.6 0.0 1.6 2 0 0 2 2 2 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 AJD69150.1 - 0.00077 19.6 0.2 0.0099 16.1 0.0 2.1 2 0 0 2 2 2 1 Diaminopimelate epimerase HTH_18 PF12833.7 AJD69151.1 - 6.9e-24 83.9 0.3 1.1e-23 83.2 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PAS_4 PF08448.10 AJD69151.1 - 1.6e-20 73.4 0.1 9e-20 71.0 0.0 2.1 3 0 0 3 3 3 1 PAS fold HTH_AraC PF00165.23 AJD69151.1 - 4.7e-20 71.2 0.0 1.2e-09 38.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family PAS_9 PF13426.7 AJD69151.1 - 0.00039 20.6 0.0 0.0011 19.1 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 AJD69151.1 - 0.00089 19.2 0.1 0.0079 16.2 0.0 2.6 3 0 0 3 3 3 1 PAS domain SRP54 PF00448.22 AJD69152.1 - 1.2e-72 243.7 1.0 1.6e-72 243.3 1.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 AJD69152.1 - 1.5e-11 44.3 0.0 2.5e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 AJD69152.1 - 3.7e-05 24.1 0.2 0.0022 18.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 AJD69152.1 - 0.0014 17.9 0.1 0.0021 17.4 0.1 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 AJD69152.1 - 0.0035 17.1 2.5 0.0035 17.1 2.5 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AJD69152.1 - 0.0091 16.2 0.1 0.019 15.1 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD69152.1 - 0.029 14.6 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD69152.1 - 0.055 14.0 0.1 0.39 11.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 AJD69152.1 - 0.056 13.8 0.5 0.056 13.8 0.5 2.4 2 1 1 3 3 3 0 AAA ATPase domain Thymidylate_kin PF02223.17 AJD69152.1 - 0.057 13.1 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Thymidylate kinase AAA PF00004.29 AJD69152.1 - 0.08 13.4 0.1 0.17 12.3 0.1 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 AJD69152.1 - 0.097 12.6 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 AJD69152.1 - 0.17 12.0 1.2 0.77 9.9 1.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 AJD69152.1 - 0.18 11.3 0.0 0.8 9.2 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region NTPase_1 PF03266.15 AJD69152.1 - 0.22 11.4 1.6 1.9 8.4 0.3 2.5 3 0 0 3 3 3 0 NTPase NUDIX_4 PF14815.6 AJD69153.1 - 1.3e-24 86.3 0.3 2.8e-24 85.2 0.3 1.6 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.25 AJD69153.1 - 1.8e-17 63.8 0.0 2.9e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 AJD69153.1 - 4.6e-08 32.5 0.0 9.1e-08 31.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 AJD69153.1 - 6.9e-06 26.6 0.0 5.9e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain NUDIX PF00293.28 AJD69153.1 - 0.0071 16.4 0.2 0.31 11.1 0.1 2.4 1 1 1 2 2 2 1 NUDIX domain Aldolase_II PF00596.21 AJD69153.1 - 0.11 12.4 0.2 0.32 10.9 0.1 1.8 2 0 0 2 2 2 0 Class II Aldolase and Adducin N-terminal domain Cytadhesin_P30 PF07271.11 AJD69153.1 - 0.17 11.5 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 EndIII_4Fe-2S PF10576.9 AJD69153.1 - 2.3 8.7 6.5 4.7 7.7 6.5 1.6 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Iron_traffic PF04362.14 AJD69154.1 - 8.2e-40 134.4 0.0 9.1e-40 134.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial Fe(2+) trafficking PAS_9 PF13426.7 AJD69155.1 - 8.5e-22 77.4 0.0 2.7e-21 75.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.26 AJD69155.1 - 6.6e-19 68.5 0.0 1.3e-18 67.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD69155.1 - 7e-18 64.8 0.2 2.6e-17 63.0 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 AJD69155.1 - 5.9e-09 35.9 0.0 2.7e-08 33.8 0.0 2.1 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.12 AJD69155.1 - 1.7e-08 34.6 0.0 4.4e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 AJD69155.1 - 3.4e-05 23.8 0.0 9.4e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 AJD69155.1 - 3.5e-05 23.7 0.1 0.00013 21.9 0.0 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD69155.1 - 0.0002 21.2 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 AJD69155.1 - 0.0002 21.6 0.0 0.00039 20.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 AJD69155.1 - 0.055 13.4 0.1 0.29 11.1 0.1 2.2 2 1 0 2 2 2 0 GHKL domain SPOB_a PF14689.6 AJD69155.1 - 0.19 11.4 0.1 0.47 10.2 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain KGG PF10685.9 AJD69157.1 - 2.4e-14 53.0 11.9 2.9e-09 36.9 1.5 2.4 3 0 0 3 3 3 2 Stress-induced bacterial acidophilic repeat motif GIY-YIG PF01541.24 AJD69158.1 - 0.0019 18.4 0.0 0.0045 17.2 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain Lipocalin_2 PF08212.12 AJD69160.1 - 9.6e-54 181.3 0.0 1.1e-53 181.1 0.0 1.0 1 0 0 1 1 1 1 Lipocalin-like domain LEA_2 PF03168.13 AJD69161.1 - 1.8e-05 25.2 0.0 2.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein DUF974 PF06159.13 AJD69161.1 - 0.04 13.7 0.0 0.062 13.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF974) Acyl-CoA_dh_C PF12806.7 AJD69162.1 - 6.5e-29 100.6 1.9 1.1e-28 99.8 1.9 1.4 1 0 0 1 1 1 1 Acetyl-CoA dehydrogenase C-terminal like Acyl-CoA_dh_1 PF00441.24 AJD69162.1 - 1.5e-24 86.9 1.1 2.5e-23 83.0 1.1 2.5 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AJD69162.1 - 1.2e-15 57.4 0.0 3.8e-15 55.9 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain AcylCoA_DH_N PF12418.8 AJD69162.1 - 2.9e-08 33.6 0.1 5.9e-08 32.6 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase N terminal Acyl-CoA_dh_N PF02771.16 AJD69162.1 - 7.8e-06 26.5 0.0 1.8e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 AJD69162.1 - 1.6e-05 25.2 0.1 7.9e-05 22.9 0.1 2.2 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HNH_5 PF14279.6 AJD69163.1 - 1.2e-16 60.3 0.1 1.8e-16 59.7 0.1 1.3 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 AJD69163.1 - 3.3e-15 56.0 0.2 7.5e-15 54.8 0.2 1.6 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 AJD69163.1 - 1.3e-09 37.8 0.0 2.2e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 HNH endonuclease zf_C2H2_6 PF18450.1 AJD69163.1 - 0.014 15.1 0.3 0.033 13.9 0.3 1.6 1 0 0 1 1 1 0 Zinc Finger domain DXP_synthase_N PF13292.6 AJD69164.1 - 1.2e-114 382.2 0.0 2.4e-114 381.1 0.0 1.5 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 AJD69164.1 - 1.1e-35 123.0 0.1 2.2e-35 121.9 0.1 1.5 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 AJD69164.1 - 3e-23 82.0 0.0 6.7e-23 80.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 AJD69164.1 - 1.2e-06 27.7 0.0 1.9e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 AJD69164.1 - 3.8e-06 26.8 4.4 8.9e-06 25.6 0.2 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 AJD69164.1 - 0.00088 18.3 0.0 0.032 13.2 0.1 2.3 2 0 0 2 2 2 1 Transketolase, thiamine diphosphate binding domain DUF1194 PF06707.11 AJD69164.1 - 0.055 12.7 0.2 0.11 11.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1194) DUF5029 PF16432.5 AJD69164.1 - 0.093 12.3 0.3 0.29 10.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5029) Glyco_tran_28_C PF04101.16 AJD69165.1 - 7e-11 42.4 0.0 1e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.18 AJD69165.1 - 8.9e-06 24.8 0.0 1.2e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_transf_4 PF13439.6 AJD69165.1 - 0.0077 16.2 1.1 0.0077 16.2 1.1 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 AJD69165.1 - 0.1 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Glyco_transf_21 PF13506.6 AJD69167.1 - 1.6e-35 122.2 0.0 2.6e-35 121.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 AJD69167.1 - 4e-12 46.5 0.0 5.9e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 AJD69167.1 - 3.5e-10 40.1 5.6 6.1e-10 39.3 5.6 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Epimerase PF01370.21 AJD69168.1 - 4.8e-27 95.0 0.0 6.5e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 AJD69168.1 - 1.6e-18 66.7 0.0 1.6e-17 63.4 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 AJD69168.1 - 8.5e-15 54.6 0.0 1.2e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 AJD69168.1 - 2.6e-13 49.7 0.0 2.6e-11 43.2 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 AJD69168.1 - 3.3e-06 26.7 0.0 0.00046 19.7 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 AJD69168.1 - 1.9e-05 24.6 0.0 9.7e-05 22.3 0.0 2.0 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 AJD69168.1 - 0.0017 17.6 0.1 0.075 12.1 0.0 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Semialdhyde_dh PF01118.24 AJD69168.1 - 0.14 12.6 0.1 0.25 11.8 0.1 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Lactamase_B PF00753.27 AJD69169.1 - 1.5e-17 64.3 0.9 2.2e-17 63.7 0.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD69169.1 - 8e-05 22.2 0.4 0.00016 21.3 0.4 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ACP_syn_III_C PF08541.10 AJD69170.1 - 3.3e-23 81.7 2.1 4.5e-23 81.2 0.3 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 AJD69170.1 - 1.5e-20 72.8 3.2 3.5e-20 71.6 3.2 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 AJD69170.1 - 1.9e-06 27.4 1.7 1.9e-06 27.4 1.7 2.1 1 1 1 2 2 2 1 Thiolase, N-terminal domain FAE1_CUT1_RppA PF08392.12 AJD69170.1 - 3.1e-06 26.7 0.1 4.5e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein Chal_sti_synt_N PF00195.19 AJD69170.1 - 5.9e-05 22.6 0.9 0.00011 21.7 0.9 1.4 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain TraB PF01963.17 AJD69171.1 - 2.3e-25 90.0 0.0 3.6e-25 89.3 0.0 1.3 1 1 0 1 1 1 1 TraB family Inj_translocase PF16928.5 AJD69171.1 - 0.18 11.3 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 DNA/protein translocase of phage P22 injectosome Cupin_5 PF06172.11 AJD69172.1 - 2.6e-40 137.8 0.0 3e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily (DUF985) Glyco_tran_WecB PF03808.13 AJD69173.1 - 7.2e-52 175.7 0.0 1.3e-51 174.9 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase WecB/TagA/CpsF family PS_pyruv_trans PF04230.13 AJD69174.1 - 2e-14 54.2 0.0 9.2e-14 52.0 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase Polysacc_synt_3 PF13440.6 AJD69176.1 - 7.7e-79 265.0 8.3 7.7e-79 265.0 8.3 1.9 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 AJD69176.1 - 6.7e-65 219.2 11.8 6.7e-65 219.2 11.8 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Glyco_trans_1_4 PF13692.6 AJD69177.1 - 9.9e-07 29.3 0.0 1.7e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD69177.1 - 4.8e-05 23.9 3.8 4.8e-05 23.9 3.8 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 AJD69177.1 - 0.00082 19.4 3.7 0.0038 17.2 3.7 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 AJD69177.1 - 0.099 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 AJD69178.1 - 2.2e-25 89.2 0.0 4.4e-25 88.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AJD69178.1 - 7.6e-19 68.3 0.6 3.2e-18 66.3 0.5 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 AJD69178.1 - 3.4e-17 63.1 0.0 1.2e-16 61.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD69178.1 - 3.5e-11 43.8 4.2 5e-11 43.3 2.3 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain DUF4089 PF13318.6 AJD69178.1 - 0.0028 18.1 0.1 0.011 16.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4089) Glyco_trans_1_2 PF13524.6 AJD69178.1 - 0.084 13.3 0.2 1.9 9.0 0.0 2.6 2 1 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AJD69178.1 - 0.2 11.7 0.1 0.42 10.6 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Acyl_transf_3 PF01757.22 AJD69179.1 - 4.4e-27 95.0 42.6 5.4e-27 94.7 42.6 1.0 1 0 0 1 1 1 1 Acyltransferase family Acyl_transf_3 PF01757.22 AJD69180.1 - 2.9e-25 89.1 44.0 3.8e-25 88.7 44.0 1.1 1 0 0 1 1 1 1 Acyltransferase family Bac_transf PF02397.16 AJD69182.1 - 7.4e-64 214.7 0.0 1e-63 214.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial sugar transferase CoA_binding_3 PF13727.6 AJD69182.1 - 7.6e-32 110.7 0.1 7.6e-32 110.7 0.1 1.9 2 0 0 2 2 2 1 CoA-binding domain MerC PF03203.14 AJD69182.1 - 5 7.6 9.1 9.2 6.8 7.2 2.4 2 1 0 2 2 2 0 MerC mercury resistance protein GNVR PF13807.6 AJD69183.1 - 1.1e-20 73.4 0.1 1.1e-20 73.4 0.1 2.6 3 0 0 3 3 3 1 G-rich domain on putative tyrosine kinase Wzz PF02706.15 AJD69183.1 - 8.2e-13 48.5 2.4 1.1e-12 48.0 0.7 2.3 2 0 0 2 2 2 1 Chain length determinant protein DNA_pol3_finger PF17657.1 AJD69183.1 - 0.0023 17.3 0.4 0.21 10.9 0.2 2.2 2 0 0 2 2 2 2 Bacterial DNA polymerase III alpha subunit finger domain ApoO PF09769.9 AJD69183.1 - 0.044 13.7 3.3 0.22 11.5 0.3 2.8 3 0 0 3 3 3 0 Apolipoprotein O DUF1616 PF07760.11 AJD69183.1 - 0.07 12.5 0.6 0.25 10.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) DUF948 PF06103.11 AJD69183.1 - 0.24 11.7 1.6 2 8.7 0.2 2.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) UPF0242 PF06785.11 AJD69183.1 - 3.1 7.8 10.1 6.7 6.8 3.1 2.9 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus GAS PF13851.6 AJD69183.1 - 8.1 5.7 13.9 2.7 7.3 0.1 3.1 3 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding Poly_export PF02563.16 AJD69184.1 - 1.9e-20 72.8 0.9 1.1e-19 70.5 0.1 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis/export protein SLBB PF10531.9 AJD69184.1 - 5.2e-09 35.8 0.6 9.4e-09 35.0 0.6 1.4 1 0 0 1 1 1 1 SLBB domain MerR_1 PF13411.6 AJD69185.1 - 8.7e-22 77.0 0.1 1.4e-21 76.4 0.1 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 AJD69185.1 - 3.8e-10 39.4 0.0 7.1e-10 38.5 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_17 PF12728.7 AJD69185.1 - 0.015 15.5 0.2 0.039 14.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Bac_DNA_binding PF00216.21 AJD69186.1 - 5.1e-32 109.9 0.1 5.7e-32 109.8 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AJD69186.1 - 1.1e-08 35.2 0.0 1.4e-08 34.9 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 AJD69186.1 - 0.0019 18.0 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_1 PF14908.6 AJD69186.1 - 0.0025 17.9 0.0 0.0027 17.8 0.0 1.1 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 1 HU-CCDC81_euk_2 PF18289.1 AJD69186.1 - 0.024 14.8 0.1 0.033 14.3 0.1 1.2 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 DUF2267 PF10025.9 AJD69186.1 - 0.092 13.0 0.2 0.13 12.5 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) NA37 PF04245.13 AJD69186.1 - 0.16 11.4 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 37-kD nucleoid-associated bacterial protein B3_4 PF03483.17 AJD69187.1 - 7e-64 214.7 0.0 1.8e-63 213.4 0.0 1.7 2 0 0 2 2 2 1 B3/4 domain tRNA_synthFbeta PF17759.1 AJD69187.1 - 9e-58 195.2 0.0 3.9e-57 193.1 0.0 2.0 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain FDX-ACB PF03147.14 AJD69187.1 - 5.2e-26 90.9 0.0 1.1e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain tRNA_bind PF01588.20 AJD69187.1 - 1.1e-24 86.4 0.1 1.9e-24 85.6 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain B5 PF03484.15 AJD69187.1 - 6.8e-18 64.7 0.5 3e-17 62.7 0.4 2.1 2 0 0 2 2 2 1 tRNA synthetase B5 domain tRNA-synt_2d PF01409.20 AJD69187.1 - 0.0022 17.5 0.0 0.0043 16.6 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.20 AJD69188.1 - 4.6e-105 350.5 0.0 5.4e-105 350.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 AJD69188.1 - 1.7e-22 79.1 1.4 3.1e-22 78.3 1.4 1.4 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain tRNA_synthFbeta PF17759.1 AJD69188.1 - 0.00021 20.8 0.0 0.0016 17.9 0.0 2.1 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain Cast PF10174.9 AJD69188.1 - 0.14 10.4 1.2 0.18 10.0 1.2 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Ribosomal_L20 PF00453.18 AJD69189.1 - 2.6e-47 159.3 8.1 3e-47 159.1 8.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 Ribosomal_L35p PF01632.19 AJD69190.1 - 8.2e-25 87.1 9.1 9e-25 87.0 9.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 LepA_C PF06421.12 AJD69190.1 - 0.25 11.5 2.7 0.29 11.3 2.7 1.1 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus IF3_C PF00707.22 AJD69191.1 - 1.6e-36 124.1 1.1 2.4e-36 123.5 1.1 1.3 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.16 AJD69191.1 - 4.4e-22 78.1 0.1 1.3e-21 76.6 0.0 1.8 2 0 0 2 2 2 1 Translation initiation factor IF-3, N-terminal domain tRNA-synt_2b PF00587.25 AJD69192.1 - 1.3e-39 136.0 0.0 2.6e-39 135.1 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 AJD69192.1 - 1.3e-21 76.5 0.5 3.1e-21 75.3 0.5 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 AJD69192.1 - 9.5e-15 54.4 0.0 2e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 AJD69192.1 - 4.7e-12 45.8 0.0 1.1e-11 44.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain Peripla_BP_3 PF13377.6 AJD69193.1 - 3.3e-36 125.1 1.6 5.3e-36 124.4 1.6 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD69193.1 - 6.8e-20 71.6 0.0 9.5e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD69193.1 - 8.2e-15 54.3 0.4 2.7e-14 52.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD69193.1 - 2.2e-07 30.7 0.0 3.2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_5 PF01022.20 AJD69193.1 - 0.098 12.5 0.1 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Alpha-amylase PF00128.24 AJD69194.1 - 3.6e-41 141.9 0.0 5.9e-41 141.1 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 AJD69194.1 - 0.0013 18.8 0.0 0.0031 17.6 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 AJD69194.1 - 0.051 13.9 1.4 0.11 12.8 1.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) MFS_1 PF07690.16 AJD69195.1 - 6.2e-17 61.5 99.8 8.1e-16 57.9 59.0 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 AJD69195.1 - 7.3e-08 31.4 34.5 3e-07 29.3 18.1 2.9 1 1 1 2 2 2 1 MFS/sugar transport protein GDE_C PF06202.14 AJD69196.1 - 2.8e-07 29.8 0.3 0.00013 21.1 0.1 2.3 2 0 0 2 2 2 2 Amylo-alpha-1,6-glucosidase Bac_rhamnosid6H PF17389.2 AJD69196.1 - 0.00013 21.3 0.1 0.00021 20.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_97 PF10566.9 AJD69197.1 - 8.3e-112 373.0 0.0 1.1e-111 372.7 0.0 1.1 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 AJD69197.1 - 2.7e-68 229.9 0.0 3.6e-68 229.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal GH97_C PF14509.6 AJD69197.1 - 4e-29 100.7 0.0 1.2e-28 99.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Plug PF07715.15 AJD69199.1 - 3.6e-14 53.2 0.9 3.6e-14 53.2 0.9 2.4 2 1 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69199.1 - 5.8e-08 32.1 1.5 6.6e-07 28.6 0.0 2.6 2 1 0 2 2 2 1 Outer membrane protein beta-barrel family Carmo_coat_C PF08462.10 AJD69199.1 - 0.066 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Carmovirus coat protein Alpha-amylase PF00128.24 AJD69201.1 - 1.8e-89 300.7 0.0 3.9e-89 299.5 0.0 1.4 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 AJD69201.1 - 0.00027 21.2 0.1 0.0006 20.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 AJD69201.1 - 0.01 16.0 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain DUF5348 PF17295.2 AJD69201.1 - 0.026 14.4 0.0 1.2 9.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5348) GlgX_C PF18390.1 AJD69201.1 - 0.05 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Glycogen debranching enzyme C-terminal domain DUF4326 PF14216.6 AJD69202.1 - 0.022 15.5 0.0 0.031 15.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4326) HTH_Tnp_1 PF01527.20 AJD69203.1 - 8.8e-19 67.6 0.1 1.1e-18 67.3 0.1 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AJD69203.1 - 2.1e-07 30.5 0.0 3.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 AJD69203.1 - 0.0001 22.4 0.0 0.00015 21.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AJD69203.1 - 0.00094 19.3 0.6 0.0017 18.5 0.5 1.7 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 AJD69203.1 - 0.0018 17.8 0.7 0.041 13.4 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.12 AJD69203.1 - 0.0049 16.7 0.0 0.0075 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 AJD69203.1 - 0.0064 16.5 0.2 0.011 15.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 AJD69203.1 - 0.024 14.6 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix SHE3 PF17078.5 AJD69203.1 - 0.029 14.1 0.5 0.038 13.7 0.5 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 HTH_11 PF08279.12 AJD69203.1 - 0.06 13.3 0.0 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 HTH domain DUF1492 PF07374.11 AJD69203.1 - 0.091 12.9 0.6 0.21 11.8 0.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1492) rve_3 PF13683.6 AJD69204.1 - 2.5e-21 75.2 0.1 6.5e-21 73.9 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AJD69204.1 - 6.3e-08 32.8 1.1 1.2e-06 28.8 1.1 2.2 1 1 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD69204.1 - 4.4e-06 26.7 1.4 6.8e-06 26.1 1.4 1.3 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD69204.1 - 3.4e-05 23.9 0.1 0.00012 22.2 0.1 2.0 1 0 0 1 1 1 1 Integrase core domain LprI PF07007.12 AJD69205.1 - 2.2e-15 57.2 5.2 2.2e-15 57.2 5.2 2.1 2 0 0 2 2 2 1 Lysozyme inhibitor LprI TrbL PF04610.14 AJD69206.1 - 2e-19 70.2 16.1 2.8e-19 69.7 16.1 1.2 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein UCR_Fe-S_N PF10399.9 AJD69206.1 - 0.94 8.9 7.6 0.19 11.1 2.9 2.2 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PG_binding_1 PF01471.18 AJD69208.1 - 8.1e-14 51.6 3.5 1.6e-13 50.6 3.5 1.5 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Glyco_hydro_19 PF00182.19 AJD69208.1 - 5.7e-05 23.1 0.0 9.6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Chitinase class I PG_binding_3 PF09374.10 AJD69208.1 - 0.0089 16.3 3.7 0.88 9.9 0.2 2.8 2 1 1 3 3 3 2 Predicted Peptidoglycan domain FG-GAP PF01839.23 AJD69209.1 - 0.00016 21.7 0.1 0.00038 20.5 0.1 1.7 1 0 0 1 1 1 1 FG-GAP repeat VCBS PF13517.6 AJD69209.1 - 0.00021 21.8 3.8 0.022 15.3 0.7 1.6 1 1 1 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Lipocalin_4 PF13648.6 AJD69209.1 - 0.034 15.1 0.2 0.068 14.1 0.1 1.6 1 1 0 1 1 1 0 Lipocalin-like domain PliI PF16743.5 AJD69209.1 - 0.035 13.8 0.2 1 9.1 0.1 2.7 2 1 0 2 2 2 0 Periplasmic lysozyme inhibitor of I-type lysozyme TrbL PF04610.14 AJD69210.1 - 1.4e-42 145.9 17.3 1.9e-42 145.5 17.3 1.2 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein CbtA PF09490.10 AJD69210.1 - 0.53 10.0 18.6 0.073 12.8 5.1 2.7 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtA) K1 PF02960.14 AJD69211.1 - 0.033 14.3 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 K1 glycoprotein DUF4141 PF13605.6 AJD69211.1 - 0.17 11.2 0.1 0.38 10.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4141) CagE_TrbE_VirB PF03135.14 AJD69212.1 - 4.1e-48 164.2 0.0 7.8e-48 163.3 0.0 1.5 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system AAA_22 PF13401.6 AJD69212.1 - 0.0063 16.8 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD69212.1 - 0.0063 16.9 0.0 0.027 14.8 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD69212.1 - 0.015 15.2 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase Septin PF00735.18 AJD69212.1 - 0.021 14.1 0.1 0.1 11.8 0.1 1.9 2 0 0 2 2 2 0 Septin AAA_7 PF12775.7 AJD69212.1 - 0.034 13.7 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_10 PF12846.7 AJD69212.1 - 0.045 12.7 0.0 2.7 6.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.18 AJD69212.1 - 0.11 11.8 0.1 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.6 AJD69212.1 - 0.13 12.0 0.1 0.29 10.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain VirB3 PF05101.13 AJD69213.1 - 1.8e-14 53.7 3.2 2.1e-14 53.5 3.2 1.1 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 AJD69214.1 - 6.8e-16 58.3 6.8 7.8e-16 58.1 6.8 1.1 1 0 0 1 1 1 1 TrbC/VIRB2 family CEND1 PF15677.5 AJD69214.1 - 0.11 13.1 0.2 0.11 13.1 0.2 1.7 2 0 0 2 2 2 0 Cell cycle exit and neuronal differentiation protein 1 FeoB_associated PF12669.7 AJD69214.1 - 0.13 12.7 2.0 0.59 10.6 0.0 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein SLT PF01464.20 AJD69215.1 - 3.5e-09 36.3 0.0 5.9e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain T2SSE PF00437.20 AJD69216.1 - 1.4e-54 185.0 0.0 1.7e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 AJD69216.1 - 9.6e-05 22.0 0.0 0.00027 20.5 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 AJD69216.1 - 0.00014 21.3 0.0 0.00038 19.9 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.12 AJD69216.1 - 0.00085 18.7 0.0 0.002 17.4 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin ATP_bind_1 PF03029.17 AJD69216.1 - 0.0015 18.4 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein DEAD PF00270.29 AJD69216.1 - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_28 PF13521.6 AJD69216.1 - 0.0029 17.9 0.0 0.0055 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD69216.1 - 0.0041 17.4 0.0 0.0098 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AJD69216.1 - 0.0043 17.6 0.0 0.0083 16.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TsaE PF02367.17 AJD69216.1 - 0.0078 16.2 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 AJD69216.1 - 0.0095 16.5 0.0 0.018 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 AJD69216.1 - 0.011 14.7 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 AJD69216.1 - 0.012 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD69216.1 - 0.012 15.9 0.0 0.019 15.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DUF815 PF05673.13 AJD69216.1 - 0.013 14.6 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF87 PF01935.17 AJD69216.1 - 0.014 15.5 0.1 0.027 14.6 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Pox_A32 PF04665.12 AJD69216.1 - 0.015 14.8 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein NACHT PF05729.12 AJD69216.1 - 0.015 15.2 0.0 0.037 14.0 0.0 1.6 2 0 0 2 2 1 0 NACHT domain Sigma54_activat PF00158.26 AJD69216.1 - 0.017 14.8 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 AJD69216.1 - 0.018 14.8 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 AJD69216.1 - 0.025 14.6 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 AJD69216.1 - 0.029 14.7 0.0 0.048 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AJD69216.1 - 0.029 14.1 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 AJD69216.1 - 0.029 14.4 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 AJD69216.1 - 0.037 13.3 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_2 PF07724.14 AJD69216.1 - 0.038 14.1 0.0 0.061 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 AJD69216.1 - 0.041 14.1 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 AJD69216.1 - 0.051 13.2 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 AJD69216.1 - 0.051 13.3 0.0 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 AJD69216.1 - 0.051 13.4 0.1 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 AJD69216.1 - 0.055 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_21 PF13304.6 AJD69216.1 - 0.06 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system RNA_helicase PF00910.22 AJD69216.1 - 0.061 13.7 0.0 0.11 12.9 0.0 1.6 1 1 0 1 1 1 0 RNA helicase PRK PF00485.18 AJD69216.1 - 0.072 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 AJD69216.1 - 0.085 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 AJD69216.1 - 0.091 13.2 0.3 0.17 12.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain Microtub_bd PF16796.5 AJD69216.1 - 0.11 12.5 0.1 0.25 11.3 0.1 1.7 1 1 0 1 1 1 0 Microtubule binding DUF2075 PF09848.9 AJD69216.1 - 0.12 11.6 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.14 AJD69216.1 - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF463 PF04317.12 AJD69216.1 - 0.13 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 PduV-EutP PF10662.9 AJD69216.1 - 0.19 11.5 0.0 0.48 10.2 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TrbI PF03743.14 AJD69217.1 - 7.3e-45 153.1 0.1 9.5e-45 152.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein FixS PF03597.15 AJD69217.1 - 0.53 10.0 2.0 1 9.1 2.0 1.4 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type FAP PF07174.11 AJD69217.1 - 0.54 9.7 11.1 0.3 10.5 9.0 1.6 1 1 0 1 1 1 0 Fibronectin-attachment protein (FAP) CagX PF03524.15 AJD69218.1 - 6.8e-51 173.0 2.6 7.8e-51 172.8 2.6 1.0 1 0 0 1 1 1 1 Conjugal transfer protein VirB8 PF04335.13 AJD69219.1 - 2.4e-39 135.4 0.4 3.2e-39 135.0 0.4 1.2 1 0 0 1 1 1 1 VirB8 protein TFIIA PF03153.13 AJD69219.1 - 5.2 6.9 12.6 7.4 6.5 12.6 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit TcpQ PF10671.9 AJD69220.1 - 1.5e-07 31.5 0.0 2.1e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Toxin co-regulated pilus biosynthesis protein Q T4SS-DNA_transf PF02534.14 AJD69221.1 - 2.9e-111 372.6 0.0 5.1e-111 371.7 0.0 1.3 1 1 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 AJD69221.1 - 5.4e-26 91.0 0.1 9.3e-26 90.3 0.1 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 AJD69221.1 - 1.8e-25 89.7 0.2 1.8e-17 63.3 0.0 2.0 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DJ-1_PfpI PF01965.24 AJD69222.1 - 0.094 12.5 0.1 0.094 12.5 0.1 1.1 1 0 0 1 1 1 0 DJ-1/PfpI family UvrB_inter PF17757.1 AJD69223.1 - 5e-31 106.7 0.2 2.2e-30 104.7 0.1 2.2 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 AJD69223.1 - 4.5e-23 80.8 0.4 9.1e-23 79.8 0.4 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 AJD69223.1 - 7.3e-18 64.9 0.1 1.8e-17 63.7 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 AJD69223.1 - 5.9e-10 39.4 0.0 4.8e-09 36.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 AJD69223.1 - 6e-10 38.6 3.4 6e-10 38.6 3.4 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.29 AJD69223.1 - 0.00014 21.7 0.0 0.0015 18.3 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 AJD69223.1 - 0.00023 20.9 0.0 0.026 14.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 AJD69223.1 - 0.0066 16.8 0.2 3 8.2 0.1 2.8 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 AJD69223.1 - 0.013 15.6 0.5 1.1 9.3 0.0 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_22 PF13401.6 AJD69223.1 - 0.021 15.1 0.1 0.45 10.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain Microtub_bd PF16796.5 AJD69223.1 - 0.12 12.3 0.1 0.82 9.6 0.0 2.2 2 0 0 2 2 2 0 Microtubule binding Cytokin_check_N PF10407.9 AJD69223.1 - 0.18 11.7 0.2 0.63 10.0 0.1 1.9 2 0 0 2 2 2 0 Cdc14 phosphatase binding protein N-terminus Phage_integrase PF00589.22 AJD69224.1 - 0.0015 18.3 1.2 0.0035 17.2 1.2 1.5 1 1 0 1 1 1 1 Phage integrase family Imm2 PF14426.6 AJD69227.1 - 0.13 12.4 0.1 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 Immunity protein Imm2 AAA_33 PF13671.6 AJD69228.1 - 0.00091 19.4 0.0 0.001 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD69228.1 - 0.017 15.5 0.0 0.022 15.2 0.0 1.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD69228.1 - 0.031 14.3 0.0 0.069 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NAD_Gly3P_dh_C PF07479.14 AJD69228.1 - 0.21 11.8 0.0 0.25 11.6 0.0 1.1 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DUF4148 PF13663.6 AJD69229.1 - 0.12 12.5 1.5 0.16 12.2 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) HTH_Tnp_1 PF01527.20 AJD69230.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69230.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69230.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD69230.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD69230.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD69230.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD69230.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD69230.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD69230.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD69230.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD69230.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD69230.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD69230.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD69230.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD69230.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD69230.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD69230.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD69230.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD69230.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD69230.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD69230.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD69231.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD69231.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD69231.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain DUF1629 PF07791.11 AJD69234.1 - 1e-51 174.2 0.0 1.5e-51 173.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) DUF4456 PF14644.6 AJD69238.1 - 0.0012 18.6 4.9 0.0015 18.3 3.9 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4456) Herpes_U30 PF04523.13 AJD69238.1 - 0.0042 15.1 5.3 0.0072 14.3 4.5 1.6 1 1 1 2 2 2 1 Herpes virus tegument protein U30 Exonuc_VII_L PF02601.15 AJD69238.1 - 0.0091 15.6 9.2 0.011 15.3 9.2 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF2207 PF09972.9 AJD69238.1 - 0.022 13.5 0.0 0.032 13.0 0.0 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Prominin PF05478.11 AJD69238.1 - 0.028 12.4 1.3 0.038 12.0 1.3 1.1 1 0 0 1 1 1 0 Prominin EMP24_GP25L PF01105.24 AJD69238.1 - 0.07 13.1 4.0 0.73 9.8 4.0 2.2 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD TraC PF07820.12 AJD69238.1 - 0.075 13.4 0.8 0.22 11.9 0.5 1.9 1 1 0 1 1 1 0 TraC-like protein PglZ PF08665.12 AJD69238.1 - 0.08 13.0 2.6 0.12 12.5 1.1 1.9 1 1 1 2 2 2 0 PglZ domain Syntaxin_2 PF14523.6 AJD69238.1 - 0.089 13.2 5.1 0.11 12.9 4.4 1.5 1 1 0 1 1 1 0 Syntaxin-like protein DUF3584 PF12128.8 AJD69238.1 - 0.094 10.2 11.0 0.13 9.8 11.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) B2 PF11473.8 AJD69238.1 - 0.19 11.5 0.1 0.19 11.5 0.1 2.4 2 0 0 2 2 2 0 RNA binding protein B2 TniQ PF06527.11 AJD69238.1 - 0.3 11.8 3.5 0.31 11.8 2.1 1.7 2 0 0 2 2 2 0 TniQ DUF1826 PF08856.11 AJD69238.1 - 0.36 10.7 8.1 0.16 11.8 0.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1826) ApoO PF09769.9 AJD69238.1 - 0.66 9.9 4.0 11 6.0 2.9 3.0 1 1 2 3 3 3 0 Apolipoprotein O Syntaxin-6_N PF09177.11 AJD69238.1 - 0.71 10.5 7.3 1.6 9.4 3.6 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal YscO-like PF16789.5 AJD69238.1 - 0.8 9.7 4.9 2.5 8.1 4.1 2.1 1 1 0 1 1 1 0 YscO-like protein LXG PF04740.12 AJD69238.1 - 1.4 8.6 7.6 5.9 6.5 4.2 2.1 1 1 0 2 2 2 0 LXG domain of WXG superfamily Fib_alpha PF08702.10 AJD69238.1 - 1.8 8.7 6.5 3.7 7.7 4.6 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family RIFIN PF02009.16 AJD69238.1 - 1.9 8.3 8.9 2.4 8.0 8.9 1.2 1 0 0 1 1 1 0 Rifin LMBR1 PF04791.16 AJD69238.1 - 3.8 6.3 5.0 6.3 5.6 4.9 1.4 1 1 0 1 1 1 0 LMBR1-like membrane protein FliJ PF02050.16 AJD69238.1 - 4.7 7.5 12.1 3.5 7.9 9.3 2.2 2 1 0 2 2 2 0 Flagellar FliJ protein WXG100 PF06013.12 AJD69238.1 - 9.2 6.6 10.5 2.3 8.5 4.2 2.9 2 1 2 4 4 4 0 Proteins of 100 residues with WXG N6_N4_Mtase PF01555.18 AJD69239.1 - 2.4e-28 99.4 0.0 4.9e-14 52.6 0.0 2.0 1 1 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 AJD69239.1 - 2.2e-05 24.3 0.0 0.035 13.8 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 AJD69239.1 - 0.0013 18.4 0.0 0.91 9.1 0.0 2.5 3 0 0 3 3 3 2 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 AJD69239.1 - 0.037 14.7 0.8 69 4.2 0.0 3.9 3 1 1 4 4 4 0 Methyltransferase domain Methyltransf_23 PF13489.6 AJD69239.1 - 0.11 12.4 0.0 0.47 10.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Phage_portal PF04860.12 AJD69240.1 - 4.5e-10 39.2 0.0 6.4e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein Terminase_6 PF03237.15 AJD69241.1 - 3.1e-62 210.0 0.2 6.2e-62 209.1 0.2 1.5 1 0 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 AJD69241.1 - 7e-41 139.9 0.0 1.3e-40 139.1 0.0 1.4 1 0 0 1 1 1 1 Terminase RNaseH-like domain Terminase_5 PF06056.12 AJD69241.1 - 3.2e-26 91.0 1.1 9e-26 89.5 1.1 1.8 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Phage_terminase PF10668.9 AJD69241.1 - 0.0051 16.8 0.5 0.012 15.6 0.5 1.6 1 0 0 1 1 1 1 Phage terminase small subunit HTH_10 PF04967.12 AJD69241.1 - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Phage_GPO PF05929.11 AJD69242.1 - 4e-105 351.3 0.3 4.5e-105 351.1 0.3 1.0 1 0 0 1 1 1 1 Phage capsid scaffolding protein (GPO) serine peptidase TPR_MLP1_2 PF07926.12 AJD69242.1 - 0.011 15.8 2.2 0.02 15.0 2.2 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ZapB PF06005.12 AJD69242.1 - 0.064 13.7 0.6 0.23 11.9 0.8 1.8 2 0 0 2 2 2 0 Cell division protein ZapB Ax_dynein_light PF10211.9 AJD69242.1 - 0.093 12.7 0.2 0.14 12.0 0.2 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain Phage_cap_P2 PF05125.12 AJD69243.1 - 1.3e-139 464.7 0.0 1.5e-139 464.5 0.0 1.0 1 0 0 1 1 1 1 Phage major capsid protein, P2 family Phage_term_smal PF05944.12 AJD69244.1 - 8.8e-50 168.0 0.0 1.4e-49 167.4 0.0 1.3 1 0 0 1 1 1 1 Phage small terminase subunit Phage_GPL PF05926.11 AJD69245.1 - 1.7e-50 170.6 2.9 1.9e-50 170.4 2.9 1.0 1 0 0 1 1 1 1 Phage head completion protein (GPL) Pollen_allerg_2 PF01620.16 AJD69245.1 - 0.16 12.2 5.5 0.43 10.8 0.3 2.1 1 1 1 2 2 2 0 Ribonuclease (pollen allergen) BA14K PF07886.11 AJD69245.1 - 0.24 11.3 0.5 0.41 10.5 0.5 1.3 1 0 0 1 1 1 0 BA14K-like protein Phage_tail_X PF05489.12 AJD69246.1 - 7.1e-30 102.5 0.2 8e-30 102.3 0.2 1.0 1 0 0 1 1 1 1 Phage Tail Protein X Phage_holin_8 PF16931.5 AJD69247.1 - 3.3e-33 114.3 3.7 3.7e-33 114.1 3.7 1.0 1 0 0 1 1 1 1 Putative phage holin Phage_holin_3_7 PF05449.11 AJD69248.1 - 7.6e-27 93.1 5.1 8.8e-27 93.0 5.1 1.0 1 0 0 1 1 1 1 Putative 3TM holin, Phage_holin_3 Glyco_hydro_19 PF00182.19 AJD69249.1 - 0.00068 19.6 0.1 0.0019 18.1 0.0 1.7 2 0 0 2 2 2 1 Chitinase class I CaiF_GrlA PF07180.11 AJD69249.1 - 0.13 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 CaiF/GrlA transcriptional regulator DUF3619 PF12279.8 AJD69250.1 - 0.024 15.0 0.4 0.049 14.0 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3619) Pilin_N PF07790.11 AJD69250.1 - 0.11 13.5 0.2 0.22 12.5 0.2 1.6 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal P2_Phage_GpR PF06891.11 AJD69251.1 - 1.8e-44 151.0 0.0 2e-44 150.8 0.0 1.0 1 0 0 1 1 1 1 P2 phage tail completion protein R (GpR) Phage_tail_S PF05069.13 AJD69252.1 - 2.9e-41 140.8 2.0 3.2e-41 140.6 2.0 1.0 1 0 0 1 1 1 1 Phage virion morphogenesis family Baseplate_J PF04865.14 AJD69253.1 - 1.6e-25 89.8 1.3 3e-25 88.8 0.7 1.6 2 0 0 2 2 2 1 Baseplate J-like protein Tail_P2_I PF09684.10 AJD69254.1 - 1.5e-47 160.9 1.0 1.8e-47 160.7 1.0 1.1 1 0 0 1 1 1 1 Phage tail protein (Tail_P2_I) Arg_repressor_C PF02863.18 AJD69255.1 - 0.11 12.3 0.1 0.28 11.1 0.1 1.6 1 0 0 1 1 1 0 Arginine repressor, C-terminal domain Phage_base_V PF04717.12 AJD69258.1 - 1.4e-17 63.6 0.1 1.5e-17 63.5 0.1 1.0 1 0 0 1 1 1 1 Type VI secretion system, phage-baseplate injector rve PF00665.26 AJD69259.1 - 7.9e-25 87.4 0.9 1.1e-24 86.9 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD69259.1 - 1.3e-14 54.1 1.9 3.2e-14 52.8 1.9 1.6 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD69259.1 - 0.0032 17.7 0.1 0.0048 17.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD69260.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69260.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69260.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD69260.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD69260.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD69260.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD69260.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD69260.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD69260.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD69260.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD69260.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD69260.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD69260.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD69260.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD69260.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD69260.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD69260.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD69260.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD69260.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD69260.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD69260.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein ComP_DUS PF16732.5 AJD69261.1 - 1.7e-17 64.0 5.9 2.4e-17 63.6 5.9 1.1 1 0 0 1 1 1 1 Type IV minor pilin ComP, DNA uptake sequence receptor N_methyl PF07963.12 AJD69261.1 - 1.6e-08 33.7 5.6 2.8e-08 33.0 5.6 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif DUF4330 PF14221.6 AJD69261.1 - 0.11 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Class_IIIsignal PF04021.12 AJD69261.1 - 1.6 8.8 6.1 3 8.0 6.1 1.5 1 0 0 1 1 1 0 Class III signal peptide Neisseria_PilC PF05567.11 AJD69262.1 - 3e-55 187.7 1.8 5.9e-55 186.7 1.8 1.4 1 0 0 1 1 1 1 Neisseria PilC beta-propeller domain PQQ_3 PF13570.6 AJD69262.1 - 0.003 18.0 0.3 0.003 18.0 0.3 6.2 8 0 0 8 8 8 1 PQQ-like domain PQQ PF01011.21 AJD69262.1 - 0.036 14.0 0.8 0.27 11.2 0.2 3.0 4 0 0 4 4 4 0 PQQ enzyme repeat VCBS PF13517.6 AJD69262.1 - 0.88 10.2 11.0 0.84 10.3 0.6 4.8 4 0 0 4 4 4 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PilW PF16074.5 AJD69263.1 - 5.4e-08 32.9 0.6 1.2e-07 31.8 0.6 1.6 1 0 0 1 1 1 1 Type IV Pilus-assembly protein W N_methyl PF07963.12 AJD69263.1 - 2.6e-07 29.9 1.2 5.1e-07 29.0 1.2 1.5 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif GspH PF12019.8 AJD69264.1 - 8.6e-17 61.5 1.5 1.2e-16 61.1 1.5 1.2 1 0 0 1 1 1 1 Type II transport protein GspH N_methyl PF07963.12 AJD69264.1 - 3.6e-07 29.5 5.6 7.5e-07 28.4 5.6 1.5 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif Baculo_gp41 PF04700.12 AJD69264.1 - 0.18 11.5 0.1 0.26 11.0 0.1 1.2 1 0 0 1 1 1 0 Structural glycoprotein p40/gp41 conserved region His_kinase PF06580.13 AJD69265.1 - 2.3e-23 82.3 0.1 3.9e-23 81.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase HATPase_c_5 PF14501.6 AJD69265.1 - 0.23 11.4 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 GHKL domain DUF3412 PF11892.8 AJD69266.1 - 3e-51 172.6 0.0 6e-51 171.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3412) DUF4478 PF14793.6 AJD69266.1 - 1.2e-39 134.5 0.0 2.2e-39 133.7 0.0 1.4 1 0 0 1 1 1 1 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Lysine_decarbox PF03641.14 AJD69266.1 - 5.1e-28 97.8 0.0 7.7e-28 97.2 0.0 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 AJD69266.1 - 0.00048 19.7 0.1 0.00082 19.0 0.1 1.3 1 0 0 1 1 1 1 SLOG cluster4 family CarboxypepD_reg PF13620.6 AJD69267.1 - 5.9e-16 58.5 6.1 5.9e-16 58.5 6.1 2.6 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Plug PF07715.15 AJD69267.1 - 0.00022 21.7 1.5 0.00022 21.7 1.5 3.1 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain CarbopepD_reg_2 PF13715.6 AJD69267.1 - 0.001 19.0 0.5 0.0028 17.6 0.5 1.8 1 0 0 1 1 1 1 CarboxypepD_reg-like domain bMG3 PF11974.8 AJD69267.1 - 0.0016 18.5 0.4 0.005 16.8 0.2 1.9 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain SdrD_B PF17210.3 AJD69267.1 - 0.015 15.5 0.4 0.015 15.5 0.4 2.5 2 0 0 2 2 2 0 SdrD B-like domain SpaA PF17802.1 AJD69267.1 - 0.02 15.2 0.2 0.094 13.0 0.2 2.2 1 0 0 1 1 1 0 Prealbumin-like fold domain YbgS PF13985.6 AJD69267.1 - 0.16 12.2 0.8 1.3 9.3 0.1 2.7 2 0 0 2 2 2 0 YbgS-like protein Big_1 PF02369.16 AJD69267.1 - 6.7 6.8 11.2 0.055 13.5 1.5 2.6 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) MarC PF01914.17 AJD69268.1 - 9e-48 162.4 10.1 1e-47 162.2 10.1 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 AJD69268.1 - 5.6e-05 22.9 0.6 5.6e-05 22.9 0.6 2.5 1 1 2 3 3 3 1 Integral membrane protein TerC family Mntp PF02659.15 AJD69268.1 - 3 7.6 10.6 0.26 11.0 1.9 2.3 2 1 0 2 2 2 0 Putative manganese efflux pump adh_short PF00106.25 AJD69269.1 - 3.7e-33 114.6 0.0 4.4e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD69269.1 - 4.3e-23 82.1 0.0 5.2e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD69269.1 - 5.1e-09 36.3 0.6 8.2e-09 35.6 0.1 1.5 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 AJD69269.1 - 0.061 12.8 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 AJD69269.1 - 0.082 12.8 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glutaredoxin PF00462.24 AJD69270.1 - 6.8e-17 61.4 0.0 9.5e-17 61.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Sod_Fe_C PF02777.18 AJD69271.1 - 1.4e-38 131.2 0.0 1.1e-36 125.1 0.0 2.1 2 0 0 2 2 2 2 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 AJD69271.1 - 2.5e-20 72.7 0.2 3.9e-20 72.1 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain ATP-grasp PF02222.22 AJD69272.1 - 1.9e-59 200.1 0.0 2.8e-59 199.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 AJD69272.1 - 1.1e-14 53.8 0.0 2.7e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_5 PF13549.6 AJD69272.1 - 0.05 13.1 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain AIRC PF00731.20 AJD69273.1 - 4.2e-62 208.1 3.2 4.8e-62 207.9 3.2 1.0 1 0 0 1 1 1 1 AIR carboxylase MarB PF13999.6 AJD69273.1 - 0.01 15.6 0.3 0.051 13.4 0.0 2.2 2 0 0 2 2 2 0 MarB protein Trm112p PF03966.16 AJD69274.1 - 3.4e-08 34.0 0.0 4.1e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Trm112p-like protein QRPTase_C PF01729.19 AJD69275.1 - 1.5e-51 174.6 0.0 1.9e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 AJD69275.1 - 2.4e-21 75.6 0.0 4.3e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Biotin_lipoyl_2 PF13533.6 AJD69275.1 - 0.14 12.0 0.1 0.38 10.6 0.1 1.7 1 0 0 1 1 1 0 Biotin-lipoyl like DUF2272 PF10030.9 AJD69276.1 - 1.1e-77 260.2 0.1 1.4e-77 259.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2272) RNase_PH PF01138.21 AJD69277.1 - 7.9e-42 142.9 0.0 9.1e-21 74.7 0.0 2.9 3 0 0 3 3 3 2 3' exoribonuclease family, domain 1 S1 PF00575.23 AJD69277.1 - 1.6e-20 73.2 2.9 1.6e-20 73.2 2.9 1.7 2 0 0 2 2 2 1 S1 RNA binding domain RNase_PH_C PF03725.15 AJD69277.1 - 7.2e-20 70.8 2.3 1.1e-10 41.4 0.1 2.6 2 0 0 2 2 2 2 3' exoribonuclease family, domain 2 PNPase PF03726.14 AJD69277.1 - 2.1e-12 47.4 2.2 2.7e-12 47.0 0.0 2.4 3 0 0 3 3 3 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain KH_1 PF00013.29 AJD69277.1 - 6.2e-12 45.2 5.1 7e-10 38.6 3.9 2.8 2 0 0 2 2 2 1 KH domain KH_2 PF07650.17 AJD69277.1 - 0.00015 21.5 0.2 0.00015 21.5 0.2 2.4 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 AJD69277.1 - 0.013 15.4 0.2 0.065 13.1 0.0 2.3 2 0 0 2 2 2 0 KH domain S1_2 PF13509.6 AJD69277.1 - 0.028 14.5 0.1 0.15 12.1 0.0 2.4 2 1 1 3 3 3 0 S1 domain KH_5 PF13184.6 AJD69277.1 - 0.061 13.4 2.2 0.16 12.1 0.5 2.5 2 0 0 2 2 2 0 NusA-like KH domain CsrA PF02599.16 AJD69277.1 - 4.1 7.4 5.8 0.63 10.0 0.4 2.4 3 0 0 3 3 3 0 Global regulator protein family Ribosomal_S15 PF00312.22 AJD69278.1 - 2.9e-37 126.7 3.2 3.2e-37 126.6 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 TruB_N PF01509.18 AJD69279.1 - 1.1e-48 165.4 0.0 1.4e-48 165.0 0.0 1.1 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 AJD69279.1 - 1.1e-16 60.7 0.1 2.1e-16 59.8 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB-C_2 PF09157.11 AJD69279.1 - 2.9e-11 43.2 0.4 6.2e-11 42.2 0.4 1.6 1 0 0 1 1 1 1 Pseudouridine synthase II TruB, C-terminal TruB_C PF09142.11 AJD69279.1 - 0.00044 20.0 0.8 0.00044 20.0 0.8 2.5 3 0 0 3 3 3 1 tRNA Pseudouridine synthase II, C terminal RBFA PF02033.18 AJD69280.1 - 1.7e-30 105.6 0.2 1.9e-30 105.4 0.2 1.0 1 0 0 1 1 1 1 Ribosome-binding factor A IF-2 PF11987.8 AJD69281.1 - 2.2e-35 120.9 3.2 6.8e-35 119.4 3.2 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 AJD69281.1 - 7.3e-35 120.3 2.5 3.6e-33 114.8 2.5 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 AJD69281.1 - 3.8e-18 65.1 1.4 2.2e-14 53.0 0.3 2.6 2 0 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region GTP_EFTU_D2 PF03144.25 AJD69281.1 - 1.5e-09 38.1 1.7 5.2e-06 26.8 0.8 3.0 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AJD69281.1 - 7.7e-09 35.6 0.1 2.5e-08 34.0 0.1 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase IF2_assoc PF08364.11 AJD69281.1 - 8e-09 35.6 8.8 2.1e-08 34.3 8.8 1.8 1 0 0 1 1 1 1 Bacterial translation initiation factor IF-2 associated region Ras PF00071.22 AJD69281.1 - 0.00014 21.5 0.0 0.00031 20.4 0.0 1.6 1 0 0 1 1 1 1 Ras family FeoB_N PF02421.18 AJD69281.1 - 0.0014 18.2 0.1 0.005 16.4 0.1 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B MeaB PF03308.16 AJD69281.1 - 0.0016 17.5 3.3 0.034 13.1 0.3 2.8 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 AJD69281.1 - 0.0089 15.5 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 AJD69281.1 - 0.021 14.7 1.1 0.63 9.9 0.0 3.0 2 1 1 3 3 3 0 RsgA GTPase GTP_EFTU_D4 PF14578.6 AJD69281.1 - 0.09 12.7 1.9 0.21 11.5 0.6 2.3 1 1 1 2 2 2 0 Elongation factor Tu domain 4 AAA_23 PF13476.6 AJD69281.1 - 1.3 9.5 5.3 70 3.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain NusA_N PF08529.11 AJD69282.1 - 5e-36 123.7 2.5 1.4e-35 122.3 2.5 1.8 1 0 0 1 1 1 1 NusA N-terminal domain KH_5 PF13184.6 AJD69282.1 - 8.9e-29 99.4 0.3 1.5e-27 95.4 0.2 2.6 2 0 0 2 2 2 1 NusA-like KH domain HHH_5 PF14520.6 AJD69282.1 - 3.6e-13 49.9 1.4 2.4e-07 31.2 0.3 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix domain S1 PF00575.23 AJD69282.1 - 5.3e-08 33.1 0.1 2.1e-07 31.2 0.1 2.2 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 AJD69282.1 - 0.00077 19.2 0.1 0.025 14.4 0.0 2.6 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 AJD69282.1 - 0.013 15.4 0.1 0.18 11.7 0.0 2.8 2 0 0 2 2 2 0 KH domain DUF4332 PF14229.6 AJD69282.1 - 0.015 15.5 0.8 2.4 8.4 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) DUF150 PF02576.17 AJD69283.1 - 2.4e-28 98.3 0.1 3.8e-28 97.7 0.1 1.3 1 0 0 1 1 1 1 RimP N-terminal domain DUF150_C PF17384.2 AJD69283.1 - 5.2e-21 74.6 0.1 8.1e-21 73.9 0.1 1.3 1 0 0 1 1 1 1 RimP C-terminal SH3 domain Proton_antipo_M PF00361.20 AJD69284.1 - 7.5e-75 251.8 20.0 7.5e-75 251.8 20.0 1.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 AJD69284.1 - 2.4e-05 23.8 8.0 2.4e-05 23.8 8.0 3.5 3 1 1 4 4 4 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_M PF00361.20 AJD69285.1 - 9.1e-78 261.4 26.3 9.1e-78 261.4 26.3 1.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 AJD69285.1 - 0.00039 20.5 0.0 0.00039 20.5 0.0 4.0 4 2 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Monellin PF09200.10 AJD69285.1 - 0.029 14.2 0.1 0.057 13.3 0.1 1.5 1 0 0 1 1 1 0 Monellin Proton_antipo_M PF00361.20 AJD69286.1 - 1.8e-86 290.0 22.4 1.8e-86 290.0 22.4 2.0 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 AJD69286.1 - 1.7e-25 88.8 6.1 1.1e-24 86.2 6.1 2.6 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 AJD69286.1 - 0.00055 19.6 0.0 0.0034 17.1 0.0 2.3 2 0 0 2 2 2 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus DUF3938 PF13074.6 AJD69286.1 - 0.056 13.7 0.3 0.056 13.7 0.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3938) GET2 PF08690.10 AJD69286.1 - 0.12 12.0 2.8 0.25 11.0 2.8 1.4 1 0 0 1 1 1 0 GET complex subunit GET2 Oxidored_q2 PF00420.24 AJD69287.1 - 1.2e-22 79.5 8.9 1.5e-22 79.2 8.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF5392 PF17370.2 AJD69287.1 - 0.2 11.7 1.1 0.24 11.5 1.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5392) Tetraspanin PF00335.20 AJD69287.1 - 1.1 9.0 11.2 0.63 9.7 4.8 2.0 2 0 0 2 2 2 0 Tetraspanin family Oxidored_q3 PF00499.20 AJD69288.1 - 3.8e-36 124.0 17.7 4.9e-36 123.6 17.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Arch_flagellin PF01917.16 AJD69288.1 - 0.11 12.7 0.4 0.11 12.7 0.4 1.7 2 0 0 2 2 2 0 Archaebacterial flagellin DUF5381 PF17353.2 AJD69288.1 - 3.8 7.2 5.7 6.8 6.4 5.7 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5381) Fer4 PF00037.27 AJD69289.1 - 1.3e-12 47.0 14.5 9.4e-07 28.4 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 AJD69289.1 - 4.1e-12 46.5 6.8 6.1e-12 45.9 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AJD69289.1 - 2.9e-10 40.1 15.8 6.4e-08 32.6 8.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 AJD69289.1 - 8e-10 38.7 6.7 1.2e-09 38.2 6.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 AJD69289.1 - 7.7e-09 35.9 15.0 1.3e-05 25.5 9.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 AJD69289.1 - 1e-07 32.8 5.2 0.0028 18.5 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 AJD69289.1 - 1.7e-06 28.1 22.4 0.00021 21.4 12.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 AJD69289.1 - 2e-06 27.9 9.6 0.00036 20.8 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 AJD69289.1 - 2e-05 24.4 11.0 0.0015 18.5 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 AJD69289.1 - 2.3e-05 24.2 13.3 0.0025 17.8 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 AJD69289.1 - 5.7e-05 23.6 9.8 0.01 16.4 11.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 AJD69289.1 - 0.0079 17.1 14.7 0.081 13.9 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain c-SKI_SMAD_bind PF08782.10 AJD69289.1 - 0.011 15.9 3.6 0.76 10.0 0.3 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_13 PF13370.6 AJD69289.1 - 0.017 15.7 11.5 0.14 12.7 2.7 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 AJD69289.1 - 0.054 13.7 8.9 6.6 7.0 8.1 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 AJD69289.1 - 0.43 11.5 11.0 3.1 8.7 2.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain EPF PF17181.4 AJD69289.1 - 0.59 10.2 5.9 0.14 12.1 2.3 1.7 1 1 1 2 2 2 0 Epidermal patterning factor proteins ETF_QO PF05187.13 AJD69289.1 - 2.6 8.2 4.6 4.1 7.6 1.1 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NADHdh PF00146.21 AJD69290.1 - 4.7e-117 390.6 27.8 5.4e-117 390.4 27.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF1368 PF07112.11 AJD69290.1 - 0.08 11.8 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1368) ATG27 PF09451.10 AJD69290.1 - 6.7 6.5 8.6 10 5.9 0.5 2.2 2 0 0 2 2 2 0 Autophagy-related protein 27 Molybdopterin PF00384.22 AJD69291.1 - 4.6e-29 101.6 0.0 1.7e-16 60.2 0.0 3.0 1 1 1 2 2 2 2 Molybdopterin oxidoreductase Fer2_4 PF13510.6 AJD69291.1 - 2.2e-19 69.3 0.1 1.2e-18 66.9 0.0 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 AJD69291.1 - 8.2e-16 57.3 0.1 8.2e-16 57.3 0.1 1.8 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molydop_binding PF01568.21 AJD69291.1 - 5.6e-12 45.7 0.2 1.8e-11 44.1 0.2 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2 PF00111.27 AJD69291.1 - 1.1e-08 34.9 0.4 6.5e-08 32.4 0.0 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 AJD69291.1 - 0.091 12.6 2.4 11 6.0 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Complex1_51K PF01512.17 AJD69292.1 - 1.6e-42 144.9 0.0 2.3e-42 144.4 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 AJD69292.1 - 4.2e-30 103.7 0.4 7.3e-30 102.9 0.4 1.4 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 AJD69292.1 - 3.8e-11 42.7 0.5 7e-11 41.8 0.5 1.5 1 0 0 1 1 1 1 SLBB domain 2Fe-2S_thioredx PF01257.19 AJD69293.1 - 2.9e-46 156.9 0.0 3.4e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_49kDa PF00346.19 AJD69294.1 - 4.7e-119 396.5 0.0 5.9e-119 396.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 AJD69294.1 - 0.00012 21.2 0.0 0.00017 20.6 0.0 1.3 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 AJD69295.1 - 6.1e-42 143.1 0.0 2.6e-41 141.1 0.0 1.8 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 AJD69296.1 - 3.8e-23 81.7 0.1 5.4e-23 81.3 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 AJD69297.1 - 2.8e-36 123.7 1.0 2.8e-36 123.7 1.0 1.3 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SecG PF03840.14 AJD69298.1 - 6e-19 67.9 7.3 8e-19 67.5 7.3 1.2 1 0 0 1 1 1 1 Preprotein translocase SecG subunit DUF202 PF02656.15 AJD69298.1 - 7.9 7.0 7.1 27 5.3 7.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) TIM PF00121.18 AJD69299.1 - 5.9e-88 294.3 0.0 6.6e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase adh_short PF00106.25 AJD69300.1 - 2.3e-35 121.8 0.0 3e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD69300.1 - 2.1e-25 89.7 0.1 2.7e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD69300.1 - 4.5e-11 43.0 0.1 6.6e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 AJD69300.1 - 0.0074 16.2 0.1 0.0098 15.8 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 AJD69300.1 - 0.016 14.6 0.0 0.044 13.2 0.0 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Bac_globin PF01152.21 AJD69301.1 - 1.2e-11 44.8 0.0 1.4e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial-like globin DUF3034 PF11231.8 AJD69302.1 - 2.3e-107 358.4 0.1 2.6e-107 358.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3034) EAL PF00563.20 AJD69303.1 - 9.9e-70 234.7 0.0 2.7e-69 233.3 0.0 1.8 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AJD69303.1 - 5.7e-37 126.9 0.1 1.4e-36 125.7 0.1 1.7 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HAMP PF00672.25 AJD69303.1 - 1.5e-12 47.7 0.1 6e-12 45.8 0.1 2.2 1 0 0 1 1 1 1 HAMP domain dCache_3 PF14827.6 AJD69303.1 - 2.3e-11 43.8 2.1 3.9e-11 43.1 2.1 1.3 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase CarboxypepD_reg PF13620.6 AJD69304.1 - 0.0016 18.7 1.2 0.024 14.9 0.0 2.4 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Cupredoxin_1 PF13473.6 AJD69304.1 - 0.012 15.7 0.0 0.024 14.7 0.0 1.6 1 1 0 1 1 1 0 Cupredoxin-like domain DUF4493 PF14900.6 AJD69304.1 - 0.06 13.2 0.0 9 6.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4493) DIOX_N PF14226.6 AJD69305.1 - 1e-30 106.9 0.0 1.5e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 non-haem dioxygenase in morphine synthesis N-terminal 2OG-FeII_Oxy PF03171.20 AJD69305.1 - 3.8e-16 59.4 0.0 6.3e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily OmpW PF03922.14 AJD69305.1 - 0.18 11.7 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 OmpW family PGM_PMM_I PF02878.16 AJD69306.1 - 2.7e-43 147.0 0.0 5.6e-43 146.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 AJD69306.1 - 1.2e-27 96.3 0.0 2.6e-27 95.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 AJD69306.1 - 1e-17 64.6 0.5 4.9e-17 62.4 0.1 2.3 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 AJD69306.1 - 1.6e-11 44.2 0.5 4.3e-11 42.8 0.5 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Biotin_carb_C PF02785.19 AJD69306.1 - 0.046 13.8 0.0 12 6.0 0.0 2.5 2 0 0 2 2 2 0 Biotin carboxylase C-terminal domain Carboxyl_trans PF01039.22 AJD69307.1 - 2.6e-17 62.6 0.1 4.4e-17 61.9 0.1 1.3 1 0 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 AJD69307.1 - 2.1e-09 37.3 4.1 3.3e-09 36.6 4.1 1.3 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 AJD69307.1 - 0.024 14.0 0.4 5.3 6.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 AJD69307.1 - 0.077 13.0 0.3 0.16 12.0 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 AJD69307.1 - 0.089 12.7 0.8 0.18 11.8 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 AJD69307.1 - 0.12 12.4 2.4 0.38 10.8 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Trp_syntA PF00290.20 AJD69308.1 - 3.5e-83 278.4 0.0 4e-83 278.2 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Peripla_BP_6 PF13458.6 AJD69308.1 - 0.024 14.3 5.6 0.031 13.9 4.8 1.7 1 1 0 1 1 1 0 Periplasmic binding protein TMP-TENI PF02581.17 AJD69308.1 - 0.026 13.9 0.3 0.14 11.5 0.1 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase PcrB PF01884.17 AJD69308.1 - 0.032 13.7 0.2 0.077 12.4 0.1 1.7 2 0 0 2 2 2 0 PcrB family DUF561 PF04481.12 AJD69308.1 - 0.043 13.0 0.0 0.34 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PALP PF00291.25 AJD69310.1 - 1.9e-45 155.5 2.0 2.5e-45 155.2 2.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme LysR_substrate PF03466.20 AJD69311.1 - 7.3e-22 77.8 10.2 7.3e-22 77.8 10.2 1.8 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD69311.1 - 3.4e-19 68.6 6.8 9.7e-19 67.1 6.8 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AJD69311.1 - 0.0005 19.9 4.2 0.00097 19.0 0.8 2.8 3 0 0 3 3 3 1 MarR family HTH_11 PF08279.12 AJD69311.1 - 0.014 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 AJD69311.1 - 0.023 14.8 2.2 0.034 14.3 0.7 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 AJD69311.1 - 0.027 14.3 1.1 0.062 13.1 0.2 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.6 AJD69311.1 - 0.069 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AJD69311.1 - 0.15 12.1 1.7 0.42 10.7 1.3 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 AJD69311.1 - 1.7 8.5 5.9 1.2 9.0 2.2 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain PRAI PF00697.22 AJD69312.1 - 8.5e-41 139.9 0.0 9.9e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PseudoU_synth_1 PF01416.20 AJD69313.1 - 4.9e-34 117.0 0.0 5.7e-25 87.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase Glyoxalase PF00903.25 AJD69315.1 - 8.1e-05 22.8 0.0 9.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Phage_GP20 PF06810.11 AJD69316.1 - 0.0049 16.7 3.6 0.0079 16.0 3.6 1.3 1 0 0 1 1 1 1 Phage minor structural protein GP20 Spc7 PF08317.11 AJD69316.1 - 0.25 10.2 2.6 0.4 9.5 2.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein IFT20 PF14931.6 AJD69316.1 - 0.31 11.2 3.7 0.61 10.3 3.7 1.4 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 Semialdhyde_dhC PF02774.18 AJD69317.1 - 1.4e-58 198.0 0.0 1.9e-58 197.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 AJD69317.1 - 1.4e-32 112.7 0.1 3.8e-32 111.3 0.1 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 AJD69317.1 - 0.048 13.8 0.1 0.099 12.7 0.1 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 AJD69317.1 - 0.079 13.7 0.1 0.17 12.6 0.1 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NmrA PF05368.13 AJD69317.1 - 0.095 12.2 0.2 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family 2-Hacid_dh_C PF02826.19 AJD69318.1 - 1.2e-59 200.6 0.0 1.8e-59 200.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AJD69318.1 - 4e-22 78.3 0.0 4.9e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 AJD69318.1 - 0.01 16.0 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Chorismate_synt PF01264.21 AJD69319.1 - 2.6e-130 433.9 0.0 3e-130 433.7 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase MTS PF05175.14 AJD69320.1 - 1.6e-17 63.6 0.0 4.3e-15 55.7 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase small domain Methyltransf_31 PF13847.6 AJD69320.1 - 7.4e-11 42.1 0.0 1.1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD69320.1 - 1.4e-06 29.0 0.0 3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD69320.1 - 1.6e-06 28.8 0.0 3.7e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 AJD69320.1 - 2e-05 24.1 0.0 3.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_10 PF05971.12 AJD69320.1 - 5.7e-05 22.6 0.0 8.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 RNA methyltransferase Methyltransf_4 PF02390.17 AJD69320.1 - 6.5e-05 22.5 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PrmC_N PF17827.1 AJD69320.1 - 0.00021 21.8 0.1 0.00043 20.8 0.1 1.6 1 0 0 1 1 1 1 PrmC N-terminal domain Methyltransf_23 PF13489.6 AJD69320.1 - 0.00035 20.4 0.0 0.0022 17.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 AJD69320.1 - 0.0031 17.1 0.0 0.0045 16.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 AJD69320.1 - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 AJD69320.1 - 0.0063 15.9 0.0 0.0099 15.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 AJD69320.1 - 0.0085 16.7 0.0 0.021 15.5 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 AJD69320.1 - 0.021 14.4 0.0 0.057 13.0 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 AJD69320.1 - 0.04 13.6 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 DNA methylase PCMT PF01135.19 AJD69320.1 - 0.24 11.1 0.0 0.59 9.9 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SCO1-SenC PF02630.14 AJD69321.1 - 4.7e-32 110.7 0.0 5.7e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 AJD69321.1 - 0.028 14.4 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family PS_Dcarbxylase PF02666.15 AJD69322.1 - 2.1e-54 184.1 0.0 2.5e-54 183.9 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase SLT PF01464.20 AJD69323.1 - 9.5e-23 80.1 0.0 3.3e-22 78.3 0.0 1.8 2 0 0 2 2 2 1 Transglycosylase SLT domain LysM PF01476.20 AJD69323.1 - 3.2e-13 49.5 0.0 4.5e-10 39.4 0.0 2.5 2 0 0 2 2 2 2 LysM domain SLT_2 PF13406.6 AJD69323.1 - 0.00014 21.2 0.1 0.00028 20.2 0.1 1.5 1 0 0 1 1 1 1 Transglycosylase SLT domain OapA PF04225.12 AJD69323.1 - 0.19 11.9 0.0 0.36 11.0 0.0 1.4 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain DUF853 PF05872.12 AJD69324.1 - 9.4e-214 710.6 1.1 1.2e-213 710.3 1.1 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 AJD69324.1 - 2.2e-06 27.2 0.2 9.4e-06 25.2 0.1 2.0 2 1 0 2 2 2 1 FtsK/SpoIIIE family DUF87 PF01935.17 AJD69324.1 - 7.4e-06 26.2 0.0 1.1e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain ResIII PF04851.15 AJD69324.1 - 6.3e-05 23.0 0.0 0.0067 16.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 AJD69324.1 - 0.00039 20.7 0.7 0.11 12.7 0.1 2.9 3 0 0 3 3 2 1 AAA domain DUF2075 PF09848.9 AJD69324.1 - 0.0014 17.9 0.4 1.6 7.9 0.3 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 AJD69324.1 - 0.0025 17.6 0.7 0.0078 16.0 0.4 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AJD69324.1 - 0.0034 17.0 2.4 0.0066 16.0 0.2 2.5 3 0 0 3 3 3 1 AAA domain TrwB_AAD_bind PF10412.9 AJD69324.1 - 0.0046 15.9 0.1 0.0092 14.9 0.1 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 AJD69324.1 - 0.0063 16.6 0.0 0.009 16.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.7 AJD69324.1 - 0.0075 15.2 0.0 1.5 7.7 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.6 AJD69324.1 - 0.018 15.4 6.4 0.42 11.0 3.8 2.9 2 1 0 2 2 2 0 AAA ATPase domain DEAD PF00270.29 AJD69324.1 - 0.042 13.6 0.1 7.5 6.3 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase T2SSE PF00437.20 AJD69324.1 - 0.061 12.4 0.2 0.14 11.2 0.2 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NUDIX PF00293.28 AJD69325.1 - 1.7e-08 34.6 0.0 2.1e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4013 PF13197.6 AJD69326.1 - 0.083 12.7 20.5 0.024 14.5 13.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) TPR_16 PF13432.6 AJD69326.1 - 2.2 9.0 15.4 0.11 13.2 1.6 3.8 2 2 1 3 3 3 0 Tetratricopeptide repeat Rhomboid PF01694.22 AJD69327.1 - 4.4e-25 88.4 16.9 6e-25 88.0 15.5 1.9 3 0 0 3 3 3 1 Rhomboid family PPR PF01535.20 AJD69327.1 - 0.13 12.5 0.3 0.47 10.8 0.1 2.0 2 0 0 2 2 2 0 PPR repeat TPR_19 PF14559.6 AJD69327.1 - 0.15 12.6 12.0 2.2 8.9 1.0 3.6 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 AJD69327.1 - 0.17 12.8 20.3 0.17 12.7 1.2 5.0 2 2 2 4 4 4 0 Tetratricopeptide repeat GreA_GreB_N PF03449.15 AJD69328.1 - 1.7e-25 89.0 1.2 2.2e-25 88.6 1.2 1.2 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 AJD69328.1 - 6e-25 87.0 0.0 1.8e-24 85.4 0.0 1.7 2 0 0 2 2 2 1 Transcription elongation factor, GreA/GreB, C-term Radical_SAM PF04055.21 AJD69329.1 - 4.2e-30 105.3 0.0 1.1e-29 104.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 AJD69329.1 - 2.8e-20 72.2 0.0 5.1e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM_2 PF18693.1 AJD69329.1 - 2e-18 66.3 1.4 5.4e-18 64.9 1.4 1.8 1 0 0 1 1 1 1 TRAM domain TRAM PF01938.20 AJD69329.1 - 0.0089 16.0 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 TRAM domain CLP1_P PF16575.5 AJD69329.1 - 0.013 15.3 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PrmA PF06325.13 AJD69329.1 - 0.19 11.1 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DLH PF01738.18 AJD69330.1 - 2.2e-36 125.5 0.0 2.5e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 AJD69330.1 - 0.077 12.6 0.2 5.9 6.5 0.1 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD69330.1 - 0.19 12.3 4.2 0.61 10.7 1.8 2.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family HIT PF01230.23 AJD69331.1 - 1.8e-08 35.0 0.0 2.4e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain TrbC PF04956.13 AJD69332.1 - 0.8 10.0 5.6 7.5 6.8 0.6 2.0 1 1 1 2 2 2 0 TrbC/VIRB2 family dUTPase PF00692.19 AJD69334.1 - 6.2e-08 32.4 0.0 5.6e-07 29.3 0.0 2.0 1 1 1 2 2 2 1 dUTPase Flagellar_put PF12611.8 AJD69334.1 - 0.078 12.8 1.2 0.13 12.0 1.2 1.3 1 0 0 1 1 1 0 Putative flagellar ParA PF10609.9 AJD69335.1 - 1.5e-100 335.8 0.0 1.7e-100 335.5 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 AJD69335.1 - 6.9e-15 55.2 0.0 1.8e-14 53.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AJD69335.1 - 5.4e-12 46.0 0.7 5.7e-09 36.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 AJD69335.1 - 9.8e-09 34.9 0.0 1.5e-08 34.3 0.0 1.3 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 AJD69335.1 - 1.1e-05 25.1 0.1 0.00071 19.1 0.1 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 AJD69335.1 - 0.00056 19.3 0.3 0.052 12.8 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 AJD69335.1 - 0.00073 18.8 1.0 0.0019 17.5 0.3 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 AJD69335.1 - 0.0037 16.3 0.2 0.0061 15.6 0.2 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 AJD69335.1 - 0.0074 15.8 3.3 0.063 12.7 0.5 2.4 3 0 0 3 3 3 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 AJD69335.1 - 0.036 13.9 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 AJD69335.1 - 0.041 13.7 2.1 1.5 8.6 0.1 2.7 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.6 AJD69335.1 - 0.091 12.3 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AJD69335.1 - 0.092 12.5 0.3 1.9 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain FTHFS PF01268.19 AJD69335.1 - 0.14 10.3 0.1 0.2 9.8 0.1 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase LpxK PF02606.14 AJD69335.1 - 0.15 11.1 0.1 0.3 10.1 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase TonB_dep_Rec PF00593.24 AJD69336.1 - 4e-48 165.5 30.0 4e-48 165.5 30.0 2.3 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69336.1 - 4.8e-23 81.8 0.7 4.8e-23 81.8 0.7 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain TonB_dep_Rec PF00593.24 AJD69337.1 - 3.5e-17 63.5 61.1 3.5e-17 63.5 61.1 2.4 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69337.1 - 2.5e-11 44.1 6.4 3.2e-11 43.7 4.5 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain CarboxypepD_reg PF13620.6 AJD69337.1 - 1.1e-07 32.0 3.2 5.6e-07 29.7 3.2 2.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain SpaA PF17802.1 AJD69337.1 - 0.011 16.0 0.2 0.045 14.1 0.2 2.0 1 0 0 1 1 1 0 Prealbumin-like fold domain Amino_oxidase PF01593.24 AJD69338.1 - 6.9e-18 65.2 2.2 4.4e-16 59.2 0.4 2.6 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.24 AJD69338.1 - 4.1e-13 49.6 8.2 1.3e-11 44.7 8.2 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD69338.1 - 2.4e-12 46.9 0.2 9.9e-12 44.9 0.2 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 AJD69338.1 - 6.3e-09 35.4 7.0 3.5e-05 23.1 3.7 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 AJD69338.1 - 9.9e-07 28.3 0.4 7.3e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD69338.1 - 1.2e-05 24.2 2.9 0.00071 18.4 0.9 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 AJD69338.1 - 2e-05 24.2 2.0 4.2e-05 23.1 0.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 AJD69338.1 - 3e-05 23.4 0.9 0.0005 19.4 0.3 2.2 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 AJD69338.1 - 0.00013 22.4 0.4 0.0048 17.4 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AJD69338.1 - 0.00062 19.1 0.4 0.00062 19.1 0.4 1.6 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 AJD69338.1 - 0.0022 17.1 3.4 0.019 14.1 0.9 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A GMC_oxred_N PF00732.19 AJD69338.1 - 0.011 15.1 2.1 0.04 13.3 0.4 2.1 2 0 0 2 2 2 0 GMC oxidoreductase AIRS_C PF02769.22 AJD69338.1 - 0.033 14.3 0.0 0.078 13.1 0.0 1.7 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain Pyr_redox_3 PF13738.6 AJD69338.1 - 0.043 13.1 3.6 0.066 12.5 1.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.18 AJD69338.1 - 0.12 10.8 0.0 8.5 4.8 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor Trp_halogenase PF04820.14 AJD69338.1 - 0.18 10.6 2.7 0.8 8.5 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 AJD69338.1 - 0.22 11.1 0.1 0.38 10.3 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 AJD69338.1 - 0.48 9.4 4.8 1.7 7.6 0.5 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Peptidase_M13_N PF05649.13 AJD69339.1 - 4.4e-92 309.7 0.0 5.4e-92 309.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 AJD69339.1 - 3e-69 232.7 0.0 4.6e-69 232.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13_N PF05649.13 AJD69340.1 - 5.6e-85 286.3 0.0 1.9e-84 284.6 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M13 Peptidase_M13 PF01431.21 AJD69340.1 - 1.1e-69 234.2 0.0 1.8e-69 233.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13_N PF05649.13 AJD69341.1 - 1.9e-66 225.4 0.0 2.3e-66 225.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 AJD69341.1 - 4.3e-42 144.0 0.0 7.3e-42 143.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 Rhomboid PF01694.22 AJD69342.1 - 4.7e-40 137.0 18.6 5.7e-40 136.8 14.9 2.0 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 AJD69342.1 - 4e-09 37.0 0.1 6.9e-09 36.2 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) P5-ATPase PF12409.8 AJD69342.1 - 0.66 10.1 2.1 1.5 8.9 1.4 1.8 1 1 1 2 2 2 0 P5-type ATPase cation transporter DNA_binding_1 PF01035.20 AJD69343.1 - 1.5e-17 63.5 0.2 2.2e-17 63.0 0.2 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Pyr_redox_2 PF07992.14 AJD69344.1 - 3e-56 190.8 2.2 4e-56 190.4 2.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AJD69344.1 - 1.4e-33 115.4 0.0 3.6e-33 114.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 AJD69344.1 - 7.1e-18 65.0 1.7 8.3e-16 58.3 0.1 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD69344.1 - 1.2e-13 51.1 0.1 9.2e-13 48.1 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AJD69344.1 - 1.4e-07 31.2 0.4 2.6e-07 30.4 0.4 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 AJD69344.1 - 2e-05 23.9 6.1 0.00017 20.8 1.8 3.2 4 0 0 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 AJD69344.1 - 6e-05 22.3 1.8 6e-05 22.3 1.8 3.1 2 1 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 AJD69344.1 - 0.00096 18.5 0.2 0.0024 17.1 0.2 1.6 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 AJD69344.1 - 0.0039 17.4 8.1 0.0069 16.6 1.3 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 AJD69344.1 - 0.0054 16.1 0.4 1.1 8.4 0.2 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 AJD69344.1 - 0.0084 15.7 18.1 0.034 13.7 2.3 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 AJD69344.1 - 0.0094 14.7 0.9 0.0094 14.7 0.9 2.3 3 1 1 4 4 4 1 HI0933-like protein K_oxygenase PF13434.6 AJD69344.1 - 0.015 14.4 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 AJD69344.1 - 0.11 11.8 0.1 1 8.7 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 AJD69344.1 - 0.12 12.3 2.6 0.44 10.4 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 AJD69344.1 - 0.17 11.1 1.9 1.4 8.1 0.2 2.3 2 0 0 2 2 2 0 FAD binding domain DAO PF01266.24 AJD69345.1 - 2.3e-66 224.8 6.3 2.7e-66 224.6 6.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 AJD69345.1 - 4.4e-11 42.6 0.0 0.00017 21.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD69345.1 - 8.2e-06 24.8 2.3 0.0086 14.8 2.6 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.14 AJD69345.1 - 6.6e-05 22.3 0.3 0.013 14.8 0.7 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD69345.1 - 7.7e-05 22.8 0.8 0.00022 21.4 0.8 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 AJD69345.1 - 0.00011 21.6 1.5 0.00083 18.7 1.3 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 AJD69345.1 - 0.00032 19.9 3.0 0.00032 19.9 3.0 1.9 2 1 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 AJD69345.1 - 0.00057 19.0 1.9 0.51 9.3 1.6 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 AJD69345.1 - 0.018 14.1 1.1 0.72 8.9 1.9 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.27 AJD69345.1 - 0.019 15.5 1.5 0.061 13.9 1.5 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 AJD69345.1 - 0.021 14.4 1.1 0.038 13.6 1.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 AJD69345.1 - 0.039 13.8 0.7 0.062 13.2 0.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 AJD69345.1 - 0.043 14.3 0.0 0.076 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 AJD69345.1 - 0.18 11.4 0.4 0.26 10.8 0.4 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.24 AJD69345.1 - 0.23 10.7 2.2 4.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 AJD69345.1 - 0.23 10.7 2.6 0.43 9.9 2.6 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase adh_short PF00106.25 AJD69345.1 - 0.24 10.8 0.2 0.37 10.2 0.2 1.2 1 0 0 1 1 1 0 short chain dehydrogenase AlaDh_PNT_C PF01262.21 AJD69345.1 - 3 7.1 5.0 1.6 8.0 2.9 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 AJD69345.1 - 4.1 7.4 6.5 49 3.9 0.1 2.8 2 1 0 2 2 2 0 FAD-NAD(P)-binding DUF418 PF04235.12 AJD69346.1 - 1e-40 139.4 13.6 1e-40 139.4 13.6 3.2 2 1 2 4 4 4 1 Protein of unknown function (DUF418) FKBP_C PF00254.28 AJD69347.1 - 1e-10 41.8 0.1 1.4e-10 41.3 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NLPC_P60 PF00877.19 AJD69348.1 - 9.2e-28 96.3 0.0 1.1e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 NlpC/P60 family Peptidase_C92 PF05708.12 AJD69348.1 - 0.014 15.5 0.0 0.81 9.8 0.0 2.3 2 1 0 2 2 2 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DUF1175 PF06672.11 AJD69348.1 - 0.051 13.3 0.0 4.4 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1175) LRAT PF04970.13 AJD69348.1 - 0.15 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 Lecithin retinol acyltransferase MLTD_N PF06474.12 AJD69348.1 - 0.6 10.3 3.3 1.3 9.2 3.3 1.6 1 0 0 1 1 1 0 MltD lipid attachment motif NLPC_P60 PF00877.19 AJD69349.1 - 9.7e-30 102.7 0.0 1.5e-29 102.1 0.0 1.3 1 0 0 1 1 1 1 NlpC/P60 family Peptidase_C92 PF05708.12 AJD69349.1 - 0.0015 18.6 0.0 0.022 14.9 0.0 2.2 2 0 0 2 2 2 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CHAP PF05257.16 AJD69349.1 - 0.038 14.6 0.0 0.076 13.6 0.0 1.5 1 0 0 1 1 1 0 CHAP domain Amidase_6 PF12671.7 AJD69349.1 - 0.12 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative amidase domain LRAT PF04970.13 AJD69349.1 - 0.15 12.4 0.0 2.7 8.3 0.0 2.1 2 0 0 2 2 2 0 Lecithin retinol acyltransferase DUF1287 PF06940.11 AJD69349.1 - 0.24 11.1 0.0 0.76 9.4 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1287) 4HBT PF03061.22 AJD69350.1 - 2.9e-18 66.0 1.3 4.2e-18 65.5 1.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 AJD69350.1 - 0.00099 19.4 0.0 0.0013 19.0 0.0 1.3 1 1 0 1 1 1 1 Thioesterase-like superfamily 4HBT_2 PF13279.6 AJD69350.1 - 0.016 15.7 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Methyltransf_25 PF13649.6 AJD69351.1 - 8.9e-14 52.0 0.0 1.6e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD69351.1 - 2e-13 50.4 0.0 3e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD69351.1 - 2.5e-12 47.2 0.0 4.7e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD69351.1 - 7.8e-10 38.8 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD69351.1 - 4.2e-09 37.0 0.0 9.5e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AJD69351.1 - 1.5e-06 27.9 0.0 2.3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 AJD69351.1 - 1.2e-05 25.0 0.0 1.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 AJD69351.1 - 3.6e-05 23.8 0.0 5.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 AJD69351.1 - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_33 PF10017.9 AJD69351.1 - 0.044 12.9 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Ubie_methyltran PF01209.18 AJD69351.1 - 0.075 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.19 AJD69351.1 - 0.081 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 AJD69351.1 - 0.082 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) AdoMet_MTase PF07757.13 AJD69351.1 - 0.083 13.2 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase TRM13 PF05206.14 AJD69351.1 - 0.12 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase TRM13 SDF PF00375.18 AJD69352.1 - 2.7e-113 378.9 30.9 3.1e-113 378.8 30.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Alk_phosphatase PF00245.20 AJD69353.1 - 1.4e-122 409.7 0.0 1.9e-122 409.2 0.0 1.1 1 0 0 1 1 1 1 Alkaline phosphatase ATP_bind_3 PF01171.20 AJD69354.1 - 4.3e-55 186.3 0.0 6.7e-55 185.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family TilS_C PF11734.8 AJD69354.1 - 1.2e-16 59.9 0.5 2.5e-16 58.9 0.5 1.6 1 0 0 1 1 1 1 TilS substrate C-terminal domain TilS PF09179.11 AJD69354.1 - 2.7e-10 40.6 8.9 2.7e-10 40.6 8.9 4.3 5 0 0 5 5 5 1 TilS substrate binding domain tRNA_Me_trans PF03054.16 AJD69354.1 - 0.079 11.7 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.19 AJD69354.1 - 0.081 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Exonuc_VII_S PF02609.16 AJD69355.1 - 2.1e-19 69.3 4.4 2.9e-19 68.9 4.4 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit MAD PF05557.13 AJD69355.1 - 0.0083 14.6 0.2 0.0089 14.4 0.2 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein V-SNARE PF05008.15 AJD69355.1 - 0.032 14.6 4.2 0.048 14.0 0.7 2.1 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF3323 PF11796.8 AJD69355.1 - 0.041 13.8 0.2 0.047 13.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) KxDL PF10241.9 AJD69355.1 - 0.058 13.7 0.0 0.071 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein polyprenyl_synt PF00348.17 AJD69356.1 - 3.3e-57 193.5 0.8 4.1e-57 193.2 0.8 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Aspzincin_M35 PF14521.6 AJD69357.1 - 1.3e-45 155.5 5.7 2.6e-45 154.5 5.7 1.5 1 0 0 1 1 1 1 Lysine-specific metallo-endopeptidase Peptidase_M35 PF02102.15 AJD69357.1 - 3.2e-12 46.0 7.2 4.7e-12 45.5 7.2 1.2 1 0 0 1 1 1 1 Deuterolysin metalloprotease (M35) family DUF4870 PF09685.10 AJD69358.1 - 8.4e-31 106.3 5.4 9.6e-31 106.1 5.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) Yip1 PF04893.17 AJD69358.1 - 0.001 18.8 2.1 0.0014 18.3 2.1 1.2 1 0 0 1 1 1 1 Yip1 domain DUF4064 PF13273.6 AJD69358.1 - 0.035 14.4 9.3 0.88 9.9 9.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) FA_desaturase PF00487.24 AJD69358.1 - 0.054 13.3 0.2 0.061 13.2 0.2 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF1179 PF06678.11 AJD69358.1 - 0.078 13.0 4.7 2.6 8.1 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1179) SLATT_1 PF18181.1 AJD69358.1 - 4.1 7.4 6.9 10 6.0 0.1 2.2 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 PmbA_TldD PF01523.16 AJD69359.1 - 7.2e-61 206.5 0.1 1e-60 206.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF615 PF04751.14 AJD69360.1 - 1.2e-48 165.0 9.0 1.3e-48 164.8 9.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF615) SAM_Exu PF18609.1 AJD69360.1 - 0.079 13.1 0.5 0.17 12.0 0.4 1.7 1 1 0 1 1 1 0 Exuperantia SAM-like domain Fe-ADH PF00465.19 AJD69360.1 - 0.32 9.7 2.3 0.64 8.8 2.1 1.5 1 1 1 2 2 2 0 Iron-containing alcohol dehydrogenase Phage_tail_APC PF16778.5 AJD69360.1 - 5 7.1 8.1 3.5 7.6 4.6 2.5 2 1 0 2 2 2 0 Phage tail assembly chaperone protein PmbA_TldD PF01523.16 AJD69361.1 - 4.3e-77 259.7 0.1 9.7e-77 258.5 0.0 1.5 2 0 0 2 2 2 1 Putative modulator of DNA gyrase AsmA_2 PF13502.6 AJD69363.1 - 8.9e-58 195.5 6.6 8.9e-58 195.5 6.6 3.5 4 0 0 4 4 4 1 AsmA-like C-terminal region DUF3971 PF13116.6 AJD69363.1 - 1.3e-41 143.1 0.0 4.9e-41 141.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function RNase_E_G PF10150.9 AJD69364.1 - 3.8e-103 344.6 0.0 6.2e-103 343.9 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 AJD69364.1 - 0.00012 22.4 0.1 0.00035 20.8 0.1 1.9 1 0 0 1 1 1 1 S1 RNA binding domain TLP1_add_C PF18313.1 AJD69364.1 - 0.013 15.5 0.2 0.031 14.2 0.2 1.7 1 0 0 1 1 1 0 Thiolase-like protein type 1 additional C-terminal domain Maf PF02545.14 AJD69365.1 - 2.5e-51 173.8 0.0 2.8e-51 173.7 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein SIMPL PF04402.14 AJD69366.1 - 1.1e-53 182.7 8.5 1.3e-53 182.4 8.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TonB_dep_Rec PF00593.24 AJD69367.1 - 1.8e-18 67.7 43.3 1.8e-18 67.7 43.3 3.0 2 1 1 3 3 3 1 TonB dependent receptor CarboxypepD_reg PF13620.6 AJD69367.1 - 3.7e-12 46.4 4.9 3.7e-12 46.4 4.9 2.9 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain Plug PF07715.15 AJD69367.1 - 2.6e-09 37.6 3.8 6e-09 36.4 2.5 2.3 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain SpaA PF17802.1 AJD69367.1 - 0.00066 20.0 0.6 0.00066 20.0 0.6 2.4 2 0 0 2 2 2 1 Prealbumin-like fold domain SdrD_B PF17210.3 AJD69367.1 - 0.0024 18.1 1.3 0.0073 16.5 1.3 1.8 1 0 0 1 1 1 1 SdrD B-like domain CarbopepD_reg_2 PF13715.6 AJD69367.1 - 0.0029 17.6 3.4 0.0056 16.6 0.1 2.7 2 1 0 2 2 2 1 CarboxypepD_reg-like domain fn3_3 PF14686.6 AJD69367.1 - 0.038 13.8 1.3 0.11 12.3 1.3 1.8 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II TonB_C PF03544.14 AJD69368.1 - 1.5e-24 86.2 0.0 2.6e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal SPOUT_MTase PF02590.17 AJD69369.1 - 1.3e-48 164.8 0.0 1.5e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase DUF839 PF05787.13 AJD69370.1 - 1.4e-91 308.2 0.2 8.6e-89 299.1 0.2 2.8 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF839) TAT_signal PF10518.9 AJD69370.1 - 5.3e-06 26.0 4.1 1.5e-05 24.6 4.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence FAD-SLDH PF12318.8 AJD69370.1 - 0.13 12.3 0.6 0.21 11.7 0.6 1.2 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase RsfS PF02410.15 AJD69371.1 - 6.5e-29 100.3 0.3 7.7e-29 100.0 0.3 1.1 1 0 0 1 1 1 1 Ribosomal silencing factor during starvation GntR PF00392.21 AJD69371.1 - 0.061 13.0 0.0 0.28 10.9 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF4265 PF14085.6 AJD69371.1 - 0.067 13.2 0.3 0.09 12.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) CTP_transf_like PF01467.26 AJD69372.1 - 2.2e-25 89.5 0.0 2.9e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like DNA_pol3_delta PF06144.13 AJD69373.1 - 4.3e-21 75.4 0.0 5.6e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase III, delta subunit LptE PF04390.12 AJD69374.1 - 7.4e-06 26.6 0.7 1.2e-05 26.0 0.7 1.2 1 0 0 1 1 1 1 Lipopolysaccharide-assembly tRNA-synt_1 PF00133.22 AJD69375.1 - 1.5e-71 241.4 0.0 2.9e-27 95.2 0.1 5.9 2 1 3 5 5 5 5 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 AJD69375.1 - 1.8e-69 233.0 0.0 2.7e-69 232.4 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 AJD69375.1 - 1e-25 90.4 0.0 2.6e-17 62.6 0.0 4.2 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 AJD69375.1 - 3e-13 50.0 0.0 5.1e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 AJD69375.1 - 3.3e-05 23.4 0.0 0.038 13.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 AJD69375.1 - 0.0037 16.2 0.0 0.96 8.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DNA_ligase_ZBD PF03119.16 AJD69375.1 - 0.04 14.0 0.0 0.098 12.7 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 AJD69375.1 - 0.061 12.7 3.0 5.2 6.6 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 AJD69375.1 - 0.16 12.4 0.2 13 6.3 0.0 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 AJD69375.1 - 0.69 10.1 3.0 0.93 9.7 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF998 PF06197.13 AJD69376.1 - 6.9e-15 55.1 39.1 8.7e-15 54.8 39.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Thioredoxin PF00085.20 AJD69377.1 - 3.3e-26 91.3 0.0 5.3e-26 90.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin TPR_20 PF14561.6 AJD69377.1 - 7e-23 80.8 14.1 2e-17 63.3 1.3 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat Thioredoxin_2 PF13098.6 AJD69377.1 - 2.2e-08 34.5 0.1 2e-07 31.4 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain TPR_19 PF14559.6 AJD69377.1 - 6.4e-07 29.8 9.0 6.4e-07 29.8 9.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat Thioredoxin_8 PF13905.6 AJD69377.1 - 3.1e-06 27.4 0.0 0.0001 22.6 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin-like Glutaredoxin PF00462.24 AJD69377.1 - 0.00021 21.4 0.0 0.0048 17.1 0.0 2.4 2 0 0 2 2 2 1 Glutaredoxin Redoxin PF08534.10 AJD69377.1 - 0.00034 20.4 0.4 0.0087 15.8 0.1 2.6 2 1 1 3 3 3 1 Redoxin AhpC-TSA PF00578.21 AJD69377.1 - 0.0005 20.0 0.2 0.005 16.7 0.1 2.3 1 1 1 2 2 2 1 AhpC/TSA family TraF PF13728.6 AJD69377.1 - 0.0008 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein TPR_16 PF13432.6 AJD69377.1 - 0.0012 19.5 14.6 0.008 16.8 5.2 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat Thioredoxin_7 PF13899.6 AJD69377.1 - 0.0021 18.2 0.0 0.0047 17.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 AJD69377.1 - 0.0044 17.0 0.0 0.0078 16.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 AJD69377.1 - 0.0046 16.7 0.0 0.0074 16.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin TPR_4 PF07721.14 AJD69377.1 - 0.014 16.0 0.4 0.014 16.0 0.4 3.0 3 0 0 3 3 2 0 Tetratricopeptide repeat OST3_OST6 PF04756.13 AJD69377.1 - 0.018 14.4 0.0 0.024 14.0 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DUF836 PF05768.14 AJD69377.1 - 0.04 14.3 0.0 0.092 13.2 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) TPR_2 PF07719.17 AJD69377.1 - 0.19 11.9 7.5 2.7 8.3 0.0 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 AJD69377.1 - 0.48 11.4 16.6 0.1 13.5 3.4 3.8 2 2 2 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 AJD69377.1 - 1.5 9.2 6.0 16 5.9 0.4 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4442 PF14539.6 AJD69378.1 - 5.2e-23 81.6 0.0 5.8e-23 81.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_C PF09500.10 AJD69378.1 - 0.033 14.0 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) NAD_binding_3 PF03447.16 AJD69380.1 - 0.43 11.2 0.0 0.43 11.2 0.0 2.5 3 0 0 3 3 3 0 Homoserine dehydrogenase, NAD binding domain RuBisCO_large_N PF02788.16 AJD69381.1 - 0.044 14.0 0.4 0.044 14.0 0.4 1.5 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF378 PF04070.12 AJD69382.1 - 1.9e-26 91.7 5.4 2.1e-26 91.5 5.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) TssN PF17555.2 AJD69382.1 - 0.14 11.5 0.1 0.15 11.5 0.1 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN Pro_isomerase PF00160.21 AJD69383.1 - 8.3e-26 91.1 0.0 1.1e-25 90.8 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EamA PF00892.20 AJD69384.1 - 3.8e-43 147.0 36.7 7.2e-22 78.0 12.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 AJD69384.1 - 0.0029 16.9 0.4 0.0029 16.9 0.4 1.6 2 0 0 2 2 2 1 Purine nucleobase transmembrane transport EmrE PF13536.6 AJD69384.1 - 0.004 16.8 7.1 0.004 16.8 7.1 2.1 1 1 1 2 2 2 1 Putative multidrug resistance efflux transporter Nuc_sug_transp PF04142.15 AJD69384.1 - 0.03 13.5 0.1 0.03 13.5 0.1 1.7 2 0 0 2 2 2 0 Nucleotide-sugar transporter TMEM234 PF10639.9 AJD69384.1 - 0.11 12.5 5.1 0.1 12.6 0.5 2.7 2 1 0 2 2 2 0 Putative transmembrane family 234 TPT PF03151.16 AJD69384.1 - 0.28 10.5 7.0 0.78 9.0 1.3 2.2 1 1 0 2 2 2 0 Triose-phosphate Transporter family Multi_Drug_Res PF00893.19 AJD69384.1 - 3 8.6 12.4 0.15 12.8 1.1 3.2 2 2 1 3 3 3 0 Small Multidrug Resistance protein LysR_substrate PF03466.20 AJD69385.1 - 1.3e-39 135.8 3.6 1.3e-39 135.8 3.6 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD69385.1 - 1.1e-18 66.9 2.8 2.4e-18 65.8 2.8 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AJD69385.1 - 0.006 16.5 0.1 0.019 14.8 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 AJD69385.1 - 0.023 14.3 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 AJD69385.1 - 0.028 14.3 0.5 0.028 14.3 0.5 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 AJD69385.1 - 0.029 14.5 0.8 0.16 12.1 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain SBP_bac_11 PF13531.6 AJD69385.1 - 0.042 13.6 1.0 0.13 12.0 0.1 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein HTH_30 PF13556.6 AJD69385.1 - 0.043 13.6 1.7 0.074 12.9 1.0 1.8 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_34 PF13601.6 AJD69385.1 - 0.098 12.8 0.1 0.4 10.9 0.1 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 AJD69385.1 - 0.2 11.7 2.2 0.43 10.7 0.6 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain FtsX_ECD PF18075.1 AJD69386.1 - 0.061 14.0 0.1 0.42 11.3 0.1 1.9 1 1 0 1 1 1 0 FtsX extracellular domain DUF4349 PF14257.6 AJD69387.1 - 1.1e-25 90.4 6.9 1.3e-25 90.1 6.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) Adenylate_cycl PF01295.18 AJD69387.1 - 0.096 11.3 0.1 0.12 10.9 0.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase, class-I GFA PF04828.14 AJD69388.1 - 0.0011 19.3 0.0 0.0011 19.3 0.0 1.5 2 0 0 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DUF885 PF05960.11 AJD69389.1 - 5e-109 366.3 5.7 6.5e-109 366.0 5.7 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) ABC_tran PF00005.27 AJD69390.1 - 2.9e-34 118.5 0.1 5.2e-34 117.7 0.1 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AJD69390.1 - 1.2e-15 57.9 4.6 2.1e-15 57.1 4.6 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 AJD69390.1 - 2.8e-07 30.2 0.4 8.1e-06 25.4 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AJD69390.1 - 0.00036 20.5 0.1 0.00077 19.4 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 AJD69390.1 - 0.00079 19.8 0.9 0.0018 18.7 0.9 1.6 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 AJD69390.1 - 0.00092 19.3 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 AJD69390.1 - 0.0069 16.7 0.2 0.042 14.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD69390.1 - 0.007 16.1 0.1 0.023 14.4 0.1 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AJD69390.1 - 0.024 14.4 0.1 0.062 13.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 AJD69390.1 - 0.032 14.3 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_5 PF07728.14 AJD69390.1 - 0.037 14.0 0.1 0.091 12.8 0.1 1.8 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 AJD69390.1 - 0.039 13.7 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 AJD69390.1 - 0.057 13.2 0.1 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_7 PF12775.7 AJD69390.1 - 0.069 12.7 0.0 0.25 10.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA PF00004.29 AJD69390.1 - 0.075 13.5 0.4 1.7 9.1 0.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 AJD69390.1 - 0.08 12.8 0.2 5.2 6.9 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 AJD69390.1 - 0.1 12.8 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain UvrA_inter PF17760.1 AJD69390.1 - 0.1 12.7 0.0 0.3 11.2 0.0 1.8 1 0 0 1 1 1 0 UvrA interaction domain AAA_18 PF13238.6 AJD69390.1 - 0.11 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 AJD69390.1 - 0.17 11.5 0.1 0.32 10.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Activator-TraM PF11657.8 AJD69390.1 - 0.22 11.4 1.6 2.7 7.8 0.1 2.4 2 0 0 2 2 2 0 Transcriptional activator TraM PRiA4_ORF3 PF07929.11 AJD69391.1 - 4e-41 140.6 0.0 4.8e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein ACR_tran PF00873.19 AJD69393.1 - 3.7e-155 518.2 9.7 4.3e-155 518.0 9.7 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD69393.1 - 1.5e-11 43.8 38.6 2.7e-07 29.8 14.0 3.3 2 1 1 3 3 3 2 MMPL family SecD_SecF PF02355.16 AJD69393.1 - 4.1e-11 42.6 19.9 1.3e-07 31.2 2.0 2.4 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 AJD69393.1 - 5.9 4.8 6.1 9.5 4.1 6.1 1.3 1 0 0 1 1 1 0 Patched family HlyD_3 PF13437.6 AJD69394.1 - 4.9e-10 40.1 3.3 8.8e-08 32.8 0.4 2.9 2 1 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 AJD69394.1 - 7.1e-09 35.2 2.9 7.6e-09 35.1 1.7 1.6 2 0 0 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AJD69394.1 - 9e-09 35.0 0.2 9e-09 35.0 0.2 3.3 3 1 0 3 3 3 1 Biotin-lipoyl like Peptidase_M23 PF01551.22 AJD69394.1 - 0.019 15.2 0.0 3.6 7.8 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 Biotin_lipoyl PF00364.22 AJD69394.1 - 0.037 13.9 0.0 0.56 10.1 0.0 2.4 2 0 0 2 2 2 0 Biotin-requiring enzyme YqfD PF06898.11 AJD69394.1 - 0.04 12.8 0.0 0.055 12.3 0.0 1.1 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD ThiS PF02597.20 AJD69394.1 - 0.08 13.6 1.0 17 6.1 0.0 3.8 3 1 1 4 4 4 0 ThiS family RnfC_N PF13375.6 AJD69394.1 - 0.11 12.4 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain MipA PF06629.12 AJD69395.1 - 2.2e-29 103.3 6.5 2.5e-29 103.1 6.5 1.0 1 0 0 1 1 1 1 MltA-interacting protein MipA OEP PF02321.18 AJD69396.1 - 1.5e-34 119.5 36.5 4.1e-22 78.9 6.1 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein DUF1204 PF06721.11 AJD69396.1 - 0.0024 17.4 3.8 0.0051 16.3 3.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1204) Dermcidin PF15291.6 AJD69396.1 - 0.3 11.7 4.6 0.18 12.4 1.4 2.2 2 0 0 2 2 2 0 Dermcidin, antibiotic peptide Response_reg PF00072.24 AJD69397.1 - 8.7e-28 96.7 0.0 2e-27 95.6 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD69397.1 - 1.2e-17 63.7 0.0 2.3e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal B12-binding PF02310.19 AJD69397.1 - 0.0011 19.0 0.1 0.02 14.9 0.0 2.4 2 1 1 3 3 3 1 B12 binding domain GerE PF00196.19 AJD69397.1 - 0.15 11.6 0.2 0.35 10.4 0.1 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HATPase_c PF02518.26 AJD69398.1 - 1.7e-18 67.2 0.0 2.5e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD69398.1 - 2.7e-10 40.1 2.2 3.3e-10 39.8 0.8 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 AJD69398.1 - 2.9e-07 30.7 0.0 3.1e-06 27.4 0.1 2.5 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.6 AJD69398.1 - 0.0045 16.9 0.0 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Cep57_MT_bd PF06657.13 AJD69398.1 - 0.08 13.4 0.1 0.19 12.2 0.1 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 HATPase_c_5 PF14501.6 AJD69398.1 - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Na_H_Exchanger PF00999.21 AJD69399.1 - 6.3e-56 189.8 36.6 7.7e-56 189.5 36.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Beta-lactamase PF00144.24 AJD69400.1 - 1.1e-70 238.5 1.9 2e-70 237.6 1.9 1.3 1 0 0 1 1 1 1 Beta-lactamase DUF3471 PF11954.8 AJD69400.1 - 8.6e-31 106.5 0.0 1.7e-30 105.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3471) Beta-lactamase2 PF13354.6 AJD69400.1 - 0.072 12.7 0.0 0.61 9.6 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase enzyme family RraA-like PF03737.15 AJD69401.1 - 3.6e-41 140.8 0.0 4e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 Aldolase/RraA PA PF02225.22 AJD69401.1 - 0.028 14.4 0.1 0.028 14.4 0.1 1.6 2 0 0 2 2 2 0 PA domain DUF72 PF01904.18 AJD69402.1 - 4.2e-52 177.4 0.1 4.9e-52 177.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 EamA PF00892.20 AJD69403.1 - 3.5e-25 88.8 31.3 2.2e-14 53.8 11.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AJD69403.1 - 0.0013 18.1 7.5 0.0017 17.7 0.9 2.4 1 1 1 2 2 2 2 Triose-phosphate Transporter family DUF2628 PF10947.8 AJD69403.1 - 0.58 10.6 0.1 0.58 10.6 0.1 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF2628) DUF2953 PF11167.8 AJD69403.1 - 1.2 9.3 0.0 1.2 9.3 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) GGDEF PF00990.21 AJD69404.1 - 6.7e-41 139.7 0.0 1.2e-40 138.9 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GAF PF01590.26 AJD69404.1 - 2.4e-10 41.2 1.3 4.9e-10 40.2 0.3 2.0 2 1 1 3 3 3 1 GAF domain GAF_2 PF13185.6 AJD69404.1 - 5.2e-06 26.8 0.6 1.3e-05 25.5 0.2 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 AJD69404.1 - 0.00083 19.7 0.3 0.0032 17.8 0.1 2.1 2 0 0 2 2 2 1 GAF domain NOD PF06816.13 AJD69404.1 - 0.083 12.5 0.0 8 6.2 0.0 2.7 2 0 0 2 2 2 0 NOTCH protein Prok-E2_B PF14461.6 AJD69404.1 - 0.1 12.3 1.3 0.7 9.6 0.4 2.4 3 0 0 3 3 3 0 Prokaryotic E2 family B PseudoU_synth_2 PF00849.22 AJD69405.1 - 3.2e-14 53.3 0.1 1.4e-12 48.0 0.1 2.2 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AJD69405.1 - 6.1e-10 38.6 0.4 2e-09 37.0 0.0 2.2 2 0 0 2 2 2 1 S4 domain EAL PF00563.20 AJD69406.1 - 3.6e-56 190.3 0.0 7.9e-56 189.2 0.0 1.6 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AJD69406.1 - 2.8e-38 131.2 0.0 4.7e-38 130.5 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 AJD69406.1 - 5.4e-07 29.8 0.0 8.9e-06 25.9 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 AJD69406.1 - 0.00011 22.4 0.0 0.0002 21.5 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 AJD69406.1 - 0.00051 20.3 0.1 0.0019 18.4 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 AJD69406.1 - 0.0021 18.0 0.0 0.005 16.8 0.0 1.7 1 1 0 1 1 1 1 PAS fold DEAD PF00270.29 AJD69407.1 - 9.4e-53 178.6 0.1 1.6e-51 174.5 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD69407.1 - 3.9e-31 107.7 0.0 2.3e-28 98.7 0.0 2.7 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DbpA PF03880.15 AJD69407.1 - 7e-23 80.4 0.0 1.5e-22 79.3 0.0 1.6 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 AJD69407.1 - 1.2e-05 25.4 0.0 2.9e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 AJD69407.1 - 0.00029 20.3 0.0 0.00062 19.2 0.0 1.5 1 0 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit AAA_19 PF13245.6 AJD69407.1 - 0.00034 20.9 0.2 0.17 12.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain adh_short PF00106.25 AJD69407.1 - 0.033 13.6 0.1 0.092 12.2 0.1 1.7 1 0 0 1 1 1 0 short chain dehydrogenase Flavi_DEAD PF07652.14 AJD69407.1 - 0.17 11.8 0.1 0.7 9.9 0.0 2.0 2 0 0 2 2 2 0 Flavivirus DEAD domain Sigma70_r2 PF04542.14 AJD69408.1 - 4e-15 55.3 2.1 6.4e-15 54.7 2.1 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 AJD69408.1 - 5.5e-10 38.8 0.1 1.4e-09 37.5 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 AJD69408.1 - 0.00014 21.4 0.0 0.00034 20.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 AJD69408.1 - 0.00021 21.0 0.0 0.00074 19.2 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_50 PF18024.1 AJD69408.1 - 0.00038 20.0 0.1 0.00081 18.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD69408.1 - 0.0013 18.2 0.1 0.0035 16.8 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 AJD69408.1 - 0.0014 18.4 0.0 0.0038 17.0 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 AJD69408.1 - 0.0019 18.3 0.0 0.0067 16.5 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AJD69408.1 - 0.0022 17.5 0.0 0.0044 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2285 PF10074.9 AJD69408.1 - 0.043 14.5 2.4 1.6 9.4 0.2 2.5 2 2 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) HTH_49 PF18010.1 AJD69408.1 - 0.061 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Cry35Ab1 HTH C-terminal domain HTH_10 PF04967.12 AJD69408.1 - 0.076 12.8 0.1 0.23 11.3 0.1 1.8 1 0 0 1 1 1 0 HTH DNA binding domain MADF_DNA_bdg PF10545.9 AJD69408.1 - 0.14 12.5 0.1 15 6.0 0.0 2.3 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like MNHE PF01899.16 AJD69409.1 - 9.7 5.9 10.3 8.7 6.1 8.8 1.8 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit S4_2 PF13275.6 AJD69410.1 - 1.7e-23 82.2 0.2 1.9e-23 82.0 0.2 1.0 1 0 0 1 1 1 1 S4 domain S4 PF01479.25 AJD69410.1 - 0.072 12.8 0.4 0.13 11.9 0.1 1.5 2 0 0 2 2 2 0 S4 domain MAPEG PF01124.18 AJD69412.1 - 1.2e-19 70.5 10.0 1.3e-19 70.4 10.0 1.0 1 0 0 1 1 1 1 MAPEG family DUF4019 PF13211.6 AJD69413.1 - 4.2e-27 94.6 0.0 6.5e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4019) DUF5337 PF17272.2 AJD69414.1 - 0.033 14.0 8.9 0.042 13.7 8.9 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5337) DUF202 PF02656.15 AJD69414.1 - 0.1 13.1 5.9 0.13 12.7 5.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) AlkA_N PF06029.11 AJD69416.1 - 2.6e-36 124.4 0.1 5.1e-36 123.5 0.1 1.5 1 0 0 1 1 1 1 AlkA N-terminal domain Ada_Zn_binding PF02805.16 AJD69416.1 - 3.1e-27 94.4 5.9 7.4e-27 93.2 5.9 1.7 1 0 0 1 1 1 1 Metal binding domain of Ada HTH_18 PF12833.7 AJD69416.1 - 1.6e-22 79.5 0.1 3.5e-22 78.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HhH-GPD PF00730.25 AJD69416.1 - 6.9e-09 36.1 0.0 1.3e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HTH_AraC PF00165.23 AJD69416.1 - 2.3e-08 33.9 0.0 0.0021 18.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_Tnp_ISL3 PF13542.6 AJD69416.1 - 0.033 13.6 0.1 0.34 10.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MHYT PF03707.16 AJD69416.1 - 0.15 12.2 0.6 0.62 10.3 0.1 2.3 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat DprA_WH PF17782.1 AJD69416.1 - 0.43 10.7 11.5 1.2 9.3 0.9 4.2 2 1 1 3 3 3 0 DprA winged helix domain DNA_binding_1 PF01035.20 AJD69417.1 - 1.5e-31 108.3 0.0 2.2e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.15 AJD69417.1 - 2.1e-06 28.4 0.0 3.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Phosphodiest PF01663.22 AJD69418.1 - 1.2e-83 281.7 0.4 1.3e-83 281.5 0.4 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 AJD69418.1 - 4.7e-10 39.3 0.0 3.2e-06 26.8 0.0 2.2 2 0 0 2 2 2 2 Sulfatase Metalloenzyme PF01676.18 AJD69418.1 - 1.2e-05 24.8 0.1 1.8e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.12 AJD69418.1 - 0.00065 19.8 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 PglZ domain Voltage_CLC PF00654.20 AJD69419.1 - 3.3e-82 276.6 32.0 3.3e-82 276.6 32.0 1.9 1 1 1 2 2 2 2 Voltage gated chloride channel ADH_N PF08240.12 AJD69420.1 - 2.5e-30 104.5 3.1 4.2e-30 103.8 0.6 2.4 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AJD69420.1 - 2.7e-27 95.3 1.5 4.9e-27 94.5 1.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 AJD69420.1 - 5.9e-05 22.5 1.5 9.9e-05 21.7 1.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Urocanase PF01175.18 AJD69420.1 - 0.0026 17.4 0.2 0.004 16.8 0.2 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain 2-Hacid_dh_C PF02826.19 AJD69420.1 - 0.014 14.7 0.2 0.026 13.9 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N_2 PF13602.6 AJD69420.1 - 0.015 16.4 0.0 0.031 15.3 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.14 AJD69420.1 - 0.12 12.0 0.8 0.17 11.4 0.8 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RPS31 PF17067.5 AJD69421.1 - 6.7e-08 32.6 1.3 8e-08 32.4 1.3 1.3 1 1 0 1 1 1 1 Ribosomal protein S31e Thx PF17070.5 AJD69421.1 - 6e-05 23.0 0.6 0.0001 22.2 0.6 1.4 1 0 0 1 1 1 1 30S ribosomal protein Thx MerC PF03203.14 AJD69422.1 - 3.3e-25 88.8 13.5 3.8e-25 88.6 13.5 1.0 1 0 0 1 1 1 1 MerC mercury resistance protein YtpI PF14007.6 AJD69422.1 - 0.078 13.1 0.9 0.12 12.5 0.3 1.7 1 1 0 1 1 1 0 YtpI-like protein Yip1 PF04893.17 AJD69422.1 - 6.8 6.4 17.1 41 3.8 17.1 1.9 1 1 0 1 1 1 0 Yip1 domain TonB_dep_Rec PF00593.24 AJD69423.1 - 1.2e-41 144.1 26.2 1.8e-41 143.5 26.2 1.2 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD69423.1 - 3.8e-20 72.5 0.5 3.8e-20 72.5 0.5 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69423.1 - 0.00011 21.3 0.0 0.00018 20.7 0.0 1.2 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family TonB_dep_Rec PF00593.24 AJD69424.1 - 7e-30 105.3 39.6 7e-30 105.3 39.6 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69424.1 - 2e-13 50.9 0.0 8.1e-13 48.9 0.0 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Transcript_VP30 PF11507.8 AJD69424.1 - 0.099 12.7 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Ebola virus-specific transcription factor VP30 Peptidase_S8 PF00082.22 AJD69425.1 - 8.2e-32 110.6 3.0 1.3e-19 70.6 0.3 2.3 2 0 0 2 2 2 2 Subtilase family P_proprotein PF01483.20 AJD69425.1 - 6.8e-18 64.5 0.0 1.1e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 Proprotein convertase P-domain Peptidase_S8_N PF16361.5 AJD69425.1 - 0.0025 18.3 0.0 0.0055 17.2 0.0 1.5 1 0 0 1 1 1 1 N-terminal of Subtilase family Peptidase_S8 PF00082.22 AJD69428.1 - 8.7e-33 113.8 7.6 6.5e-21 74.9 2.4 2.1 2 0 0 2 2 2 2 Subtilase family P_proprotein PF01483.20 AJD69428.1 - 1.8e-14 53.5 0.0 2.9e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Proprotein convertase P-domain MHC_I_C PF06623.11 AJD69428.1 - 0.32 10.9 2.6 0.34 10.9 0.4 2.1 2 0 0 2 2 2 0 MHC_I C-terminus Aldo_ket_red PF00248.21 AJD69430.1 - 2.4e-65 220.7 0.0 2.7e-65 220.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Rio2_N PF09202.11 AJD69430.1 - 0.0038 17.4 0.0 0.007 16.6 0.0 1.3 1 0 0 1 1 1 1 Rio2, N-terminal MFS_1 PF07690.16 AJD69431.1 - 1.3e-36 126.2 52.6 1.5e-36 126.1 52.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_4 PF06779.14 AJD69431.1 - 3.8e-09 36.3 44.8 5e-09 35.9 44.8 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 AJD69431.1 - 8.3e-05 21.6 16.1 8.3e-05 21.6 16.1 2.2 1 1 1 2 2 2 1 Sugar (and other) transporter YrvL PF14184.6 AJD69431.1 - 9.1 6.4 11.2 0.42 10.7 4.5 2.3 2 0 0 2 2 2 0 Regulatory protein YrvL LysR_substrate PF03466.20 AJD69432.1 - 4.1e-49 166.8 6.3 4.1e-49 166.8 6.3 1.8 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD69432.1 - 6e-17 61.3 3.0 8.4e-17 60.9 1.7 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD69432.1 - 0.059 13.2 0.8 0.13 12.1 0.8 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 AJD69432.1 - 0.086 12.4 0.1 0.68 9.5 0.2 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding AraC_N PF06719.13 AJD69434.1 - 3.5e-47 159.8 1.1 5.1e-47 159.3 1.1 1.2 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus HTH_18 PF12833.7 AJD69434.1 - 1.2e-18 67.1 1.3 1.2e-18 67.1 1.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD69434.1 - 4.6e-16 58.5 0.4 6.6e-10 38.8 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.14 AJD69434.1 - 0.0059 16.8 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like TetR_N PF00440.23 AJD69434.1 - 0.088 12.6 0.1 0.26 11.1 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_23 PF13384.6 AJD69434.1 - 0.13 12.1 0.6 0.85 9.5 0.0 2.7 4 0 0 4 4 4 0 Homeodomain-like domain RPN6_N PF18055.1 AJD69434.1 - 0.13 12.6 0.1 0.74 10.2 0.0 2.0 1 1 1 2 2 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain Cupin_2 PF07883.11 AJD69435.1 - 3.8e-12 45.8 0.4 5.4e-12 45.2 0.4 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AJD69435.1 - 1.9e-07 31.1 0.1 2.7e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 AJD69435.1 - 8.7e-07 28.7 0.2 1.3e-06 28.1 0.2 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 AJD69435.1 - 0.01 15.5 0.1 0.17 11.6 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF861) ARD PF03079.14 AJD69435.1 - 0.16 12.2 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family TetR_N PF00440.23 AJD69436.1 - 7.8e-19 67.2 0.5 2.1e-18 65.8 0.4 1.9 1 1 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 AJD69436.1 - 3.3e-10 40.0 1.3 4.6e-10 39.6 0.2 1.8 2 1 0 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_11 PF16859.5 AJD69436.1 - 0.013 15.8 3.8 0.013 15.8 3.8 1.9 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HTH_22 PF13309.6 AJD69436.1 - 0.096 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain OEP PF02321.18 AJD69437.1 - 1.3e-54 184.9 35.8 4.3e-31 108.2 9.9 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein YkyA PF10368.9 AJD69437.1 - 0.022 14.4 0.5 0.022 14.4 0.5 1.6 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF5396 PF17374.2 AJD69437.1 - 0.051 11.4 0.1 0.088 10.7 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5396) ACR_tran PF00873.19 AJD69438.1 - 0 1307.5 15.5 0 1307.3 15.5 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD69438.1 - 2.4e-12 46.4 31.2 1.1e-07 31.1 10.4 2.6 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 AJD69438.1 - 0.00042 19.8 32.4 0.027 13.8 17.2 2.6 2 0 0 2 2 2 2 Protein export membrane protein HlyD_D23 PF16576.5 AJD69439.1 - 8.3e-13 48.0 1.0 1.1e-11 44.4 1.0 2.3 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AJD69439.1 - 4e-09 36.2 3.0 3.2e-08 33.2 0.1 3.4 3 1 0 3 3 3 1 Biotin-lipoyl like HlyD_3 PF13437.6 AJD69439.1 - 1.4e-08 35.3 2.8 0.0011 19.6 0.1 3.4 2 2 1 3 3 3 2 HlyD family secretion protein HlyD PF00529.20 AJD69439.1 - 2.1e-07 30.7 9.4 2.3e-06 27.4 9.4 2.6 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS OEP PF02321.18 AJD69439.1 - 0.12 12.2 9.6 0.2 11.5 9.6 1.3 1 0 0 1 1 1 0 Outer membrane efflux protein LPAM_2 PF13627.6 AJD69439.1 - 2.1 8.3 5.9 3.9 7.4 5.9 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site TetR_C_7 PF14246.6 AJD69440.1 - 1.1e-28 99.7 0.7 2.8e-28 98.3 0.0 1.8 2 0 0 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 AJD69440.1 - 7.6e-16 57.6 0.1 1.4e-15 56.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 AJD69440.1 - 0.00033 20.8 0.0 0.00048 20.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 AJD69440.1 - 0.0026 17.5 0.0 0.0067 16.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 AJD69440.1 - 0.063 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase FUR PF01475.19 AJD69441.1 - 7e-11 42.3 0.0 1.8e-10 41.0 0.0 1.6 2 0 0 2 2 2 1 Ferric uptake regulator family Cytochrome_C7 PF14522.6 AJD69441.1 - 6.5 6.8 9.2 1.8 8.7 3.3 2.5 2 1 1 3 3 3 0 Cytochrome c7 and related cytochrome c tRNA-synt_1c PF00749.21 AJD69442.1 - 9.9e-102 340.0 0.0 1.2e-101 339.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.18 AJD69442.1 - 0.1 11.5 0.0 1.9 7.3 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF3616 PF12275.8 AJD69443.1 - 1.8e-111 372.7 0.0 2.1e-111 372.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3616) CN_hydrolase PF00795.22 AJD69444.1 - 3e-19 69.4 0.1 3.7e-19 69.1 0.1 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Acetyltransf_1 PF00583.25 AJD69445.1 - 0.00044 20.5 0.0 0.00071 19.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AJD69445.1 - 0.0019 18.6 0.0 0.0035 17.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJD69445.1 - 0.075 13.0 0.0 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CreD PF06123.12 AJD69447.1 - 1.8e-141 471.8 0.0 2e-141 471.6 0.0 1.0 1 0 0 1 1 1 1 Inner membrane protein CreD Glyco_hydro_49N PF17433.2 AJD69447.1 - 0.17 11.5 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 49 N-terminal Ig-like domain CAAD PF14159.6 AJD69447.1 - 5.8 6.8 7.4 0.94 9.4 1.3 2.4 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF2070 PF09843.9 AJD69447.1 - 7.6 4.7 13.8 10 4.3 13.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Peptidase_C1 PF00112.23 AJD69448.1 - 1.5e-15 57.9 0.1 1.8e-15 57.7 0.1 1.1 1 0 0 1 1 1 1 Papain family cysteine protease HATPase_c PF02518.26 AJD69449.1 - 2.4e-18 66.7 0.0 4.4e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD69449.1 - 8.5e-11 41.7 0.7 1.9e-10 40.6 0.7 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 AJD69449.1 - 3e-10 40.3 0.0 1.1e-09 38.4 0.0 2.1 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 AJD69449.1 - 0.052 13.5 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 AJD69449.1 - 0.08 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 AJD69449.1 - 0.083 12.7 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD69450.1 - 1.3e-23 83.3 0.0 1.7e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD69450.1 - 1.6e-20 72.9 0.9 2.3e-20 72.4 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal RsmJ PF04378.13 AJD69451.1 - 8.9e-98 326.4 0.0 1.1e-97 326.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ Cons_hypoth95 PF03602.15 AJD69451.1 - 0.022 14.4 0.0 0.072 12.7 0.0 1.8 2 1 0 2 2 2 0 Conserved hypothetical protein 95 Acetyltransf_3 PF13302.7 AJD69452.1 - 4.9e-08 33.8 0.0 5.9e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD69452.1 - 1e-07 32.2 0.0 1.3e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 AJD69452.1 - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD69452.1 - 0.0036 17.7 0.0 0.0053 17.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJD69452.1 - 0.023 14.7 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AJD69452.1 - 0.11 12.6 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 AJD69452.1 - 0.19 11.4 0.0 0.32 10.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TRCF PF03461.15 AJD69453.1 - 7.8e-28 96.7 0.0 3.9e-26 91.3 0.0 2.5 2 0 0 2 2 2 1 TRCF domain CarD_CdnL_TRCF PF02559.16 AJD69453.1 - 1.3e-23 83.5 0.0 4.2e-23 81.9 0.0 1.9 2 0 0 2 2 2 1 CarD-like/TRCF domain UvrB_inter PF17757.1 AJD69453.1 - 4.7e-18 65.2 0.0 1.2e-17 63.8 0.0 1.7 1 0 0 1 1 1 1 UvrB interaction domain Helicase_C PF00271.31 AJD69453.1 - 2.4e-17 63.2 0.4 6.6e-16 58.6 0.2 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 AJD69453.1 - 6.4e-17 61.9 0.0 1.4e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 AJD69453.1 - 2.8e-09 37.2 0.0 5.7e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UB2H PF14814.6 AJD69453.1 - 0.0003 20.8 0.0 0.0011 18.9 0.0 2.0 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain ERCC3_RAD25_C PF16203.5 AJD69453.1 - 0.021 14.1 0.1 0.04 13.1 0.1 1.4 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase AroM PF07302.11 AJD69453.1 - 0.026 13.9 0.0 0.061 12.7 0.0 1.5 1 0 0 1 1 1 0 AroM protein AAA_30 PF13604.6 AJD69453.1 - 0.098 12.4 2.1 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain Exonuc_VII_L PF02601.15 AJD69454.1 - 0.0056 16.3 3.6 0.0066 16.1 3.6 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit Prominin PF05478.11 AJD69454.1 - 0.12 10.3 3.6 0.19 9.6 3.6 1.3 1 1 0 1 1 1 0 Prominin SieB PF14163.6 AJD69454.1 - 0.14 11.6 0.3 0.86 9.1 0.0 2.0 2 0 0 2 2 2 0 Super-infection exclusion protein B DUF3015 PF11220.8 AJD69454.1 - 0.18 11.7 0.7 0.31 10.9 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3015) DUF3035 PF11233.8 AJD69454.1 - 0.38 11.0 6.4 0.61 10.4 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) HTH_6 PF01418.17 AJD69454.1 - 0.48 10.4 2.5 0.74 9.8 0.2 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain, rpiR family Myb_Cef PF11831.8 AJD69454.1 - 0.5 9.9 8.7 0.44 10.1 7.1 1.7 1 1 0 1 1 1 0 pre-mRNA splicing factor component Syntaxin_2 PF14523.6 AJD69454.1 - 0.67 10.4 7.4 1.1 9.7 7.4 1.3 1 0 0 1 1 1 0 Syntaxin-like protein Fib_alpha PF08702.10 AJD69454.1 - 3.4 7.8 6.5 11 6.2 6.4 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family AHH PF14412.6 AJD69456.1 - 1.8e-05 24.7 0.0 4.5e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF1629 PF07791.11 AJD69457.1 - 4.4e-37 127.0 0.0 6.8e-37 126.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) SymE_toxin PF08845.10 AJD69458.1 - 4.5e-18 65.0 0.1 7.6e-18 64.3 0.1 1.4 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system STAS_2 PF13466.6 AJD69459.1 - 3.3e-15 56.2 3.5 4.1e-15 55.9 3.5 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 AJD69459.1 - 9e-07 28.5 0.0 1.2e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 STAS domain CheW PF01584.19 AJD69460.1 - 2.5e-22 79.0 0.2 4.3e-22 78.2 0.2 1.4 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 AJD69460.1 - 1.1e-16 60.8 1.1 1.1e-16 60.8 1.1 2.2 2 0 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 AJD69460.1 - 1.5e-15 57.7 0.0 2.8e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 AJD69460.1 - 5.1e-09 36.4 0.4 1.2e-08 35.2 0.4 1.6 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain Cu_amine_oxidN2 PF02727.16 AJD69460.1 - 0.011 15.9 0.0 0.033 14.4 0.0 1.7 1 0 0 1 1 1 0 Copper amine oxidase, N2 domain P2 PF07194.11 AJD69460.1 - 0.034 14.2 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 P2 response regulator binding domain HAMP_N3 PF18575.1 AJD69461.1 - 3.1e-70 231.5 7.9 5.5e-22 77.1 0.1 6.3 6 0 0 6 6 5 4 HAMP N-terminal domain 3 MCPsignal PF00015.21 AJD69461.1 - 2.2e-36 125.2 43.7 9.1e-32 110.2 26.3 5.5 4 2 0 4 4 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Not3 PF04065.15 AJD69461.1 - 0.0066 15.9 1.8 0.84 9.0 0.2 3.3 4 0 0 4 4 4 1 Not1 N-terminal domain, CCR4-Not complex component DUF948 PF06103.11 AJD69461.1 - 0.016 15.5 3.6 0.016 15.5 3.6 6.5 6 3 0 6 6 5 0 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 AJD69461.1 - 0.031 14.7 31.2 0.74 10.2 0.0 8.2 10 1 1 11 11 6 0 HAMP domain HAUS-augmin3 PF14932.6 AJD69461.1 - 0.053 13.1 11.1 0.019 14.6 2.0 2.3 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Mur_ligase_C PF02875.21 AJD69461.1 - 0.069 13.4 2.5 0.13 12.5 0.1 2.7 3 0 0 3 3 1 0 Mur ligase family, glutamate ligase domain GAS PF13851.6 AJD69461.1 - 0.07 12.5 6.3 0.54 9.6 0.1 2.7 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding SKA2 PF16740.5 AJD69461.1 - 0.075 12.8 13.5 0.3 10.9 0.6 4.7 4 1 1 5 5 4 0 Spindle and kinetochore-associated protein 2 UPF0449 PF15136.6 AJD69461.1 - 0.11 13.0 1.6 4.4 7.8 0.0 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 AbiTii PF18864.1 AJD69461.1 - 0.11 12.6 0.8 3.9 7.6 0.0 3.1 3 1 0 3 3 3 0 AbiTii Sec8_exocyst PF04048.14 AJD69461.1 - 0.14 12.1 3.7 6.4 6.7 0.3 2.6 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Fib_alpha PF08702.10 AJD69461.1 - 0.16 12.1 3.2 1.3 9.2 0.4 2.7 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family GCN5L1 PF06320.13 AJD69461.1 - 0.36 11.0 7.9 6 7.1 0.7 2.8 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Spc7 PF08317.11 AJD69461.1 - 0.44 9.4 10.1 1 8.2 1.1 2.7 2 0 0 2 2 2 0 Spc7 kinetochore protein Mce4_CUP1 PF11887.8 AJD69461.1 - 0.5 9.8 6.3 16 4.8 3.2 2.7 2 1 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Vps54_N PF10475.9 AJD69461.1 - 0.51 9.6 1.8 14 4.9 0.0 2.7 3 0 0 3 3 3 0 Vacuolar-sorting protein 54, of GARP complex TSNAXIP1_N PF15739.5 AJD69461.1 - 0.51 10.7 4.0 1.6 9.2 0.1 2.7 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus TMPIT PF07851.13 AJD69461.1 - 0.63 9.2 4.2 3.6 6.7 0.8 2.2 2 0 0 2 2 2 0 TMPIT-like protein Tweety PF04906.13 AJD69461.1 - 0.99 8.0 5.8 0.57 8.8 0.9 2.6 2 0 0 2 2 2 0 Tweety Golgin_A5 PF09787.9 AJD69461.1 - 1.3 8.4 8.3 0.73 9.3 0.2 2.7 2 0 0 2 2 2 0 Golgin subfamily A member 5 Fzo_mitofusin PF04799.13 AJD69461.1 - 1.4 8.5 4.5 1.7 8.2 0.6 2.7 2 0 0 2 2 2 0 fzo-like conserved region GldM_N PF12081.8 AJD69461.1 - 1.5 8.9 13.6 2 8.5 2.6 2.7 2 0 0 2 2 2 0 GldM N-terminal domain COG2 PF06148.11 AJD69461.1 - 1.9 8.6 12.9 0.5 10.4 1.7 4.4 5 1 0 5 5 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Sec34 PF04136.15 AJD69461.1 - 1.9 8.4 7.4 8.7 6.2 0.4 3.0 3 0 0 3 3 2 0 Sec34-like family Serine_rich PF08824.10 AJD69461.1 - 2 8.4 5.3 5.4 7.0 0.4 3.1 3 0 0 3 3 3 0 Serine rich protein interaction domain DASH_Dad4 PF08650.10 AJD69461.1 - 2.2 8.3 7.5 9.4 6.3 0.6 3.3 3 1 0 3 3 2 0 DASH complex subunit Dad4 NPV_P10 PF05531.12 AJD69461.1 - 2.4 8.7 10.8 7.4 7.1 1.3 4.8 5 2 1 6 6 4 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 AJD69461.1 - 2.6 8.1 12.5 5.7 7.0 1.0 4.8 5 1 1 6 6 5 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 AJD69461.1 - 3.2 8.1 16.5 7.1 7.0 2.5 4.4 3 2 2 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.9 AJD69461.1 - 3.4 6.7 5.1 3.4 6.6 0.3 2.2 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF16 PF01519.16 AJD69461.1 - 5.4 7.6 8.6 4.7 7.8 0.2 3.3 3 1 0 3 3 2 0 Protein of unknown function DUF16 AAA_13 PF13166.6 AJD69461.1 - 7.4 5.1 15.7 5.4 5.5 1.6 3.0 2 1 1 3 3 3 0 AAA domain THOC7 PF05615.13 AJD69461.1 - 8.4 6.7 10.6 8.1 6.7 1.7 3.1 3 0 0 3 3 3 0 Tho complex subunit 7 CheW PF01584.19 AJD69462.1 - 9.5e-33 112.8 0.5 1.2e-32 112.4 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain EAL PF00563.20 AJD69463.1 - 1.1e-73 247.7 0.8 1.7e-72 243.8 0.0 2.6 3 0 0 3 3 3 1 EAL domain Response_reg PF00072.24 AJD69463.1 - 2.8e-17 62.9 0.0 6.2e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain DUF2555 PF10742.9 AJD69463.1 - 0.14 12.0 0.1 3.1 7.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2555) CheR PF01739.18 AJD69464.1 - 4.6e-51 173.1 0.0 6.3e-51 172.6 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 AJD69464.1 - 2.9e-15 55.7 2.7 1.4e-14 53.6 0.2 2.5 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.6 AJD69464.1 - 5.9e-06 26.9 0.0 0.0025 18.5 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.6 AJD69464.1 - 7.4e-06 25.8 0.0 0.00039 20.2 0.0 2.4 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD69464.1 - 2.1e-05 25.2 0.0 0.04 14.7 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.12 AJD69464.1 - 0.00074 20.1 0.0 0.016 15.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain CheB_methylest PF01339.17 AJD69465.1 - 1.1e-60 204.3 0.4 2.3e-60 203.2 0.2 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 AJD69465.1 - 9.4e-23 80.5 0.2 2.6e-22 79.1 0.2 1.8 1 0 0 1 1 1 1 Response regulator receiver domain MTD PF01993.18 AJD69465.1 - 0.036 13.4 0.2 0.053 12.8 0.2 1.3 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Abhydrolase_6 PF12697.7 AJD69465.1 - 1.6 9.3 5.0 1.6 9.3 2.6 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family PLDc_2 PF13091.6 AJD69466.1 - 6.6e-38 129.6 0.0 3e-19 69.2 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AJD69466.1 - 5e-11 42.3 0.3 4.2e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif Peptidase_M13_N PF05649.13 AJD69467.1 - 2.8e-96 323.5 0.0 3.7e-96 323.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 AJD69467.1 - 2.1e-72 243.1 0.0 3.2e-72 242.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 DUF4226 PF10774.9 AJD69467.1 - 0.16 12.3 1.0 0.42 10.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Peptidase_M48 PF01435.18 AJD69468.1 - 0.079 12.7 0.0 0.079 12.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M48 His_Phos_1 PF00300.22 AJD69469.1 - 1.7e-36 125.7 1.0 5.9e-29 101.1 0.9 2.1 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) Endonuclease_5 PF04493.14 AJD69470.1 - 2.1e-69 233.2 0.0 2.5e-69 232.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V UvrC_HhH_N PF08459.11 AJD69470.1 - 0.23 11.3 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal Pirin PF02678.16 AJD69472.1 - 1e-34 118.7 0.1 1.6e-34 118.2 0.1 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 AJD69472.1 - 5.6e-27 94.1 0.0 1.1e-26 93.2 0.0 1.5 1 0 0 1 1 1 1 Pirin C-terminal cupin domain FecR PF04773.13 AJD69472.1 - 0.23 12.1 0.0 0.39 11.4 0.0 1.4 1 0 0 1 1 1 0 FecR protein OsmC PF02566.19 AJD69474.1 - 2.9e-16 59.8 0.0 3.7e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Pirin PF02678.16 AJD69475.1 - 3.5e-38 129.9 0.1 5.9e-38 129.2 0.1 1.4 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 AJD69475.1 - 5.5e-31 107.0 0.0 2.4e-30 105.0 0.0 1.9 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 AJD69475.1 - 0.045 13.5 0.5 0.32 10.7 0.1 2.4 2 1 0 2 2 2 0 Cupin domain CstA PF02554.14 AJD69476.1 - 3.2e-165 549.6 28.7 3.2e-165 549.6 28.7 2.1 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 AJD69476.1 - 1.5e-36 125.3 7.1 1.5e-36 125.3 7.1 4.0 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA ACR_tran PF00873.19 AJD69476.1 - 5.8 4.4 12.2 9 3.8 12.2 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Sel_put PF04328.13 AJD69477.1 - 4.3e-26 90.7 2.2 5.1e-26 90.5 2.2 1.1 1 0 0 1 1 1 1 Selenoprotein, putative CheR_N PF03705.15 AJD69477.1 - 0.13 12.0 0.5 0.75 9.6 0.5 2.0 1 1 0 1 1 1 0 CheR methyltransferase, all-alpha domain HAD_2 PF13419.6 AJD69478.1 - 5.9e-24 85.1 0.0 7.1e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD69478.1 - 3.3e-09 37.4 0.2 4.9e-08 33.5 0.2 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD69478.1 - 1.2e-05 25.3 0.0 2.4e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 AJD69478.1 - 0.11 12.7 0.0 1.2 9.3 0.0 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Ank_4 PF13637.6 AJD69479.1 - 2.3e-15 56.7 1.0 1.5e-06 28.7 0.0 4.8 3 1 2 5 5 5 2 Ankyrin repeats (many copies) Ank_2 PF12796.7 AJD69479.1 - 2.7e-15 56.7 0.1 8.9e-09 35.8 0.0 3.1 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank_3 PF13606.6 AJD69479.1 - 1.7e-13 49.4 0.1 0.044 14.3 0.0 4.8 5 0 0 5 5 5 3 Ankyrin repeat Ank_5 PF13857.6 AJD69479.1 - 1.3e-10 41.3 0.3 8.6e-05 22.8 0.0 3.2 2 1 1 3 3 3 3 Ankyrin repeats (many copies) Ank PF00023.30 AJD69479.1 - 8.6e-09 35.5 1.0 0.88 10.1 0.4 4.7 4 1 0 4 4 4 3 Ankyrin repeat DUF1843 PF08898.10 AJD69479.1 - 0.072 13.6 0.1 0.21 12.1 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) DUF2974 PF11187.8 AJD69480.1 - 7.5e-08 32.2 0.6 1.3e-07 31.5 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2974) Abhydrolase_6 PF12697.7 AJD69480.1 - 0.001 19.7 1.6 0.001 19.7 0.4 1.8 1 1 1 2 2 2 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 AJD69480.1 - 0.015 14.8 5.7 0.43 10.0 0.7 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family Lipase_3 PF01764.25 AJD69480.1 - 0.016 15.1 1.4 0.042 13.7 1.4 1.6 1 1 0 1 1 1 0 Lipase (class 3) DUF819 PF05684.12 AJD69481.1 - 6.3e-144 479.7 22.7 7.1e-144 479.5 22.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF819) MarR PF01047.22 AJD69482.1 - 0.16 11.9 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 MarR family NTP_transf_3 PF12804.7 AJD69484.1 - 5.6e-24 85.3 5.1 6.9e-24 85.0 5.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 AJD69484.1 - 0.0021 17.8 0.1 0.0055 16.5 0.1 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2064) IspD PF01128.19 AJD69484.1 - 0.0047 16.7 0.1 0.016 15.0 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase rve PF00665.26 AJD69485.1 - 6.7e-26 90.8 0.0 1.3e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD69485.1 - 1.6e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD69485.1 - 1.5e-05 25.0 0.5 2.9e-05 24.1 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD69485.1 - 0.027 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 DDE domain HTH_Tnp_1 PF01527.20 AJD69486.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69486.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69486.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD69486.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD69486.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD69486.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD69486.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD69486.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD69486.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD69486.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) XdhC_C PF13478.6 AJD69487.1 - 1.4e-22 80.5 0.0 2e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 AJD69488.1 - 5.9e-25 87.2 2.5 1.2e-24 86.3 2.5 1.5 1 0 0 1 1 1 1 XdhC and CoxI family PKS_DE PF18369.1 AJD69488.1 - 0.13 12.9 1.4 0.13 12.9 1.4 1.8 2 0 0 2 2 2 0 Polyketide synthase dimerisation element domain Ald_Xan_dh_C2 PF02738.18 AJD69489.1 - 8.1e-122 407.5 0.3 1.1e-121 407.1 0.3 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 AJD69489.1 - 3.7e-20 72.3 0.7 9.8e-20 71.0 0.3 2.0 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.21 AJD69490.1 - 1.6e-51 174.5 0.1 3e-51 173.6 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 AJD69490.1 - 5.1e-07 29.8 3.7 6.6e-07 29.5 0.3 2.5 3 0 0 3 3 3 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 AJD69491.1 - 1.2e-29 102.1 3.7 1.7e-29 101.7 0.1 2.5 3 0 0 3 3 3 1 [2Fe-2S] binding domain Fer2 PF00111.27 AJD69491.1 - 4.5e-10 39.3 0.5 4.5e-10 39.3 0.5 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 AJD69491.1 - 2.1e-05 24.5 0.4 5.3e-05 23.2 0.4 1.8 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 AJD69491.1 - 0.0073 16.3 1.5 0.037 14.1 1.5 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UCR_Fe-S_N PF10399.9 AJD69491.1 - 0.13 11.6 3.5 0.33 10.3 3.5 1.7 1 1 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ADH_zinc_N PF00107.26 AJD69492.1 - 8.6e-31 106.6 0.4 1.4e-30 106.0 0.4 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AJD69492.1 - 6.3e-21 75.8 0.1 1.2e-20 75.0 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD69492.1 - 4.9e-07 29.6 0.0 9.6e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 AJD69492.1 - 1.6e-05 24.3 0.4 2.7e-05 23.6 0.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 AJD69492.1 - 0.0016 18.7 0.0 0.0026 18.0 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 AJD69492.1 - 0.021 14.2 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GGDEF PF00990.21 AJD69493.1 - 1e-47 161.9 0.0 2e-47 161.0 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 AJD69493.1 - 8.9e-18 65.0 0.0 1.5e-17 64.2 0.0 1.4 2 0 0 2 2 2 1 Cache domain GGDEF_2 PF17853.1 AJD69493.1 - 0.03 14.6 2.6 0.04 14.2 0.2 2.5 2 1 0 2 2 2 0 GGDEF-like domain sCache_3_2 PF17203.4 AJD69493.1 - 0.18 11.9 3.2 0.62 10.2 1.2 2.3 1 1 1 2 2 2 0 Single cache domain 3 SWI2_SNF2 PF18766.1 AJD69494.1 - 8.6e-22 77.9 0.3 3.4e-21 76.0 0.3 1.9 1 1 0 1 1 1 1 SWI2/SNF2 ATPase ResIII PF04851.15 AJD69494.1 - 1.3e-15 57.8 0.3 2.3e-15 57.0 0.3 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HSDR_N PF04313.14 AJD69494.1 - 1.3e-09 38.3 0.0 3.3e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_16 PF13191.6 AJD69494.1 - 4.4e-05 23.9 4.3 5.8e-05 23.5 0.1 2.9 3 0 0 3 3 3 1 AAA ATPase domain UvrD-helicase PF00580.21 AJD69494.1 - 0.18 11.3 1.2 0.29 10.6 1.2 1.6 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain Methylase_S PF01420.19 AJD69495.1 - 0.0003 21.1 0.0 0.28 11.4 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DprA_WH PF17782.1 AJD69495.1 - 0.025 14.7 6.3 3.6 7.8 0.3 3.3 3 0 0 3 3 3 0 DprA winged helix domain Exonuc_VII_S PF02609.16 AJD69495.1 - 0.12 12.4 0.0 0.39 10.8 0.0 1.8 2 0 0 2 2 2 0 Exonuclease VII small subunit N6_Mtase PF02384.16 AJD69496.1 - 8.6e-49 166.5 0.0 1.3e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 AJD69496.1 - 5.1e-18 66.0 0.1 9.2e-18 65.2 0.1 1.5 1 0 0 1 1 1 1 HsdM N-terminal domain CNTF PF01110.17 AJD69496.1 - 0.02 14.3 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Ciliary neurotrophic factor UPF0020 PF01170.18 AJD69496.1 - 0.061 13.0 0.1 0.36 10.5 0.1 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Laminin_II PF06009.12 AJD69498.1 - 0.0089 16.0 0.2 0.013 15.5 0.2 1.3 1 0 0 1 1 1 1 Laminin Domain II MbeD_MobD PF04899.12 AJD69498.1 - 0.094 12.8 1.0 0.16 12.1 1.0 1.4 1 0 0 1 1 1 0 MbeD/MobD like BLOC1_2 PF10046.9 AJD69498.1 - 0.1 12.9 0.1 0.25 11.6 0.1 1.7 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIC PF04977.15 AJD69498.1 - 0.4 10.5 3.1 0.29 10.9 0.6 1.8 1 1 0 1 1 1 0 Septum formation initiator Phage_integrase PF00589.22 AJD69499.1 - 0.00022 21.1 0.3 0.0038 17.0 0.3 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.22 AJD69500.1 - 7.1e-06 25.9 0.6 2.4e-05 24.2 0.1 2.2 2 1 0 2 2 2 1 Phage integrase family Phage_integrase PF00589.22 AJD69501.1 - 6.1e-13 48.9 0.0 1.3e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family SSB PF00436.25 AJD69502.1 - 5.1e-39 132.5 0.3 6.2e-39 132.2 0.3 1.1 1 0 0 1 1 1 1 Single-strand binding protein family polyprenyl_synt PF00348.17 AJD69503.1 - 4.2e-76 255.4 0.3 5.4e-76 255.0 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Transket_pyr PF02779.24 AJD69503.1 - 0.0061 16.3 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain AsnC_trans_reg PF01037.21 AJD69503.1 - 0.033 14.1 0.2 7.7 6.6 0.0 3.1 2 1 1 3 3 3 0 Lrp/AsnC ligand binding domain DLH PF01738.18 AJD69504.1 - 2.5e-35 122.0 0.1 2.9e-35 121.8 0.1 1.0 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 AJD69504.1 - 2.2e-05 24.0 0.0 0.034 13.6 0.0 2.5 1 1 1 2 2 2 2 Prolyl oligopeptidase family BAAT_C PF08840.11 AJD69504.1 - 0.00028 20.9 0.5 0.11 12.4 0.0 2.2 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 AJD69504.1 - 0.00097 18.5 0.1 0.07 12.4 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 AJD69504.1 - 0.0098 15.7 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.20 AJD69504.1 - 0.0099 15.5 0.0 0.034 13.8 0.0 1.7 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 AJD69504.1 - 0.066 13.1 0.8 2 8.2 0.0 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Mur_ligase_M PF08245.12 AJD69505.1 - 1.1e-22 81.0 0.0 2.1e-22 80.1 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AJD69505.1 - 9.8e-07 28.9 0.0 3.1e-06 27.4 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain CbiA PF01656.23 AJD69505.1 - 0.039 14.0 0.4 0.081 13.0 0.4 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain zf_UBZ PF18439.1 AJD69505.1 - 4.9 6.8 5.1 0.96 9.1 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Orn_Arg_deC_N PF02784.16 AJD69508.1 - 3.2e-42 144.6 0.0 4.7e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AA_kinase PF00696.28 AJD69508.1 - 9.4e-40 136.7 0.0 1.8e-39 135.8 0.0 1.5 1 0 0 1 1 1 1 Amino acid kinase family Orn_DAP_Arg_deC PF00278.22 AJD69508.1 - 7.7e-22 77.4 0.0 1.3e-21 76.6 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 AJD69508.1 - 5.1e-06 26.3 0.2 1.5e-05 24.8 0.2 1.7 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain ACT PF01842.25 AJD69508.1 - 2.1e-05 24.2 0.1 0.002 17.9 0.0 3.0 2 0 0 2 2 2 1 ACT domain PhzC-PhzF PF02567.16 AJD69509.1 - 1.1e-53 182.6 0.0 1.2e-53 182.4 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 AJD69509.1 - 0.012 14.7 0.0 0.022 13.8 0.0 1.4 1 0 0 1 1 1 0 Proline racemase PhzC-PhzF PF02567.16 AJD69510.1 - 4e-50 170.9 0.0 4.7e-50 170.6 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 AJD69510.1 - 0.033 13.2 0.0 0.047 12.7 0.0 1.1 1 0 0 1 1 1 0 Proline racemase Flg_hook PF02120.16 AJD69510.1 - 0.093 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK Rick_17kDa_Anti PF05433.15 AJD69511.1 - 3.2e-07 30.1 20.0 3.2e-07 30.1 20.0 1.9 2 1 0 2 2 2 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 AJD69511.1 - 0.0015 18.2 17.8 0.0015 18.2 17.8 1.7 2 0 0 2 2 2 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 AJD69511.1 - 0.0056 16.7 17.8 0.0056 16.7 17.8 2.0 2 0 0 2 2 2 1 Glycine zipper TraT PF05818.12 AJD69511.1 - 0.14 11.9 1.9 0.2 11.3 1.9 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF456 PF04306.13 AJD69511.1 - 0.77 10.0 8.1 0.11 12.8 4.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF456) OsmC PF02566.19 AJD69512.1 - 5.7e-22 78.1 0.0 7.2e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein OTCace_N PF02729.21 AJD69513.1 - 2e-37 128.5 0.0 3.2e-37 127.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 AJD69513.1 - 6.9e-22 78.2 0.0 4.8e-21 75.5 0.0 2.3 2 1 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RuvX PF03652.15 AJD69514.1 - 2.1e-36 125.3 0.0 2.3e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Holliday junction resolvase DUF179 PF02622.15 AJD69515.1 - 1.4e-48 164.8 0.0 1.6e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 Adenine_glyco PF03352.13 AJD69516.1 - 8.4e-40 136.4 0.1 1.3e-38 132.6 0.0 1.9 1 1 1 2 2 2 2 Methyladenine glycosylase DUF72 PF01904.18 AJD69517.1 - 1.5e-71 241.0 0.1 1.8e-71 240.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 YitT_membrane PF02588.15 AJD69518.1 - 0.03 13.7 0.3 0.03 13.7 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Pectate_lyase PF03211.13 AJD69519.1 - 2.2e-32 112.2 0.3 3.2e-32 111.7 0.3 1.2 1 0 0 1 1 1 1 Pectate lyase SelK_SelG PF10961.8 AJD69519.1 - 0.23 12.1 3.9 0.21 12.2 0.8 2.4 1 1 1 2 2 2 0 Selenoprotein SelK_SelG T2SSE PF00437.20 AJD69520.1 - 6.1e-35 120.6 0.3 9.1e-35 120.0 0.3 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 AJD69520.1 - 0.00021 21.8 0.1 0.00052 20.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_7 PF12775.7 AJD69520.1 - 0.002 17.7 0.1 0.0042 16.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_29 PF13555.6 AJD69520.1 - 0.0091 15.7 0.7 0.041 13.6 0.9 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD69520.1 - 0.011 16.0 0.1 0.029 14.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AJD69520.1 - 0.019 14.9 0.3 0.064 13.2 0.1 2.0 1 1 1 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 AJD69520.1 - 0.029 14.1 0.0 0.059 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD69520.1 - 0.031 14.6 0.0 0.1 13.0 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 AJD69520.1 - 0.035 13.4 0.1 0.066 12.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ResIII PF04851.15 AJD69520.1 - 0.049 13.6 0.0 0.084 12.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DAP3 PF10236.9 AJD69520.1 - 0.057 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_23 PF13476.6 AJD69520.1 - 0.084 13.4 0.5 0.23 11.9 0.5 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 AJD69520.1 - 0.085 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.9 AJD69520.1 - 0.14 11.0 0.2 0.24 10.3 0.2 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 AJD69520.1 - 0.18 11.9 0.1 0.4 10.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 AJD69521.1 - 5.8e-47 160.0 0.0 3.5e-46 157.5 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 AJD69521.1 - 6.8e-05 23.3 0.0 0.00013 22.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD69521.1 - 0.001 18.8 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AJD69521.1 - 0.0011 18.7 0.0 0.0065 16.2 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AJD69521.1 - 0.0012 19.1 0.3 0.006 16.8 0.2 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 AJD69521.1 - 0.0022 18.5 0.1 0.0057 17.2 0.1 1.6 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 AJD69521.1 - 0.0081 15.5 0.0 0.021 14.2 0.0 1.6 2 0 0 2 2 1 1 FtsK/SpoIIIE family DAP3 PF10236.9 AJD69521.1 - 0.0081 15.4 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 SRP54 PF00448.22 AJD69521.1 - 0.0083 15.8 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ABC_tran PF00005.27 AJD69521.1 - 0.0098 16.4 0.0 0.016 15.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TrwB_AAD_bind PF10412.9 AJD69521.1 - 0.012 14.5 0.1 0.037 12.9 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.6 AJD69521.1 - 0.013 15.8 0.2 0.041 14.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 AJD69521.1 - 0.017 15.2 0.0 0.032 14.3 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Rad17 PF03215.15 AJD69521.1 - 0.02 14.8 0.1 0.13 12.2 0.1 2.0 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_11 PF13086.6 AJD69521.1 - 0.021 14.6 0.1 0.068 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 AJD69521.1 - 0.027 14.4 0.3 0.3 11.0 0.1 2.3 1 1 1 2 2 2 0 NTPase AAA_7 PF12775.7 AJD69521.1 - 0.031 13.8 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF87 PF01935.17 AJD69521.1 - 0.04 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain ATP_bind_1 PF03029.17 AJD69521.1 - 0.05 13.4 0.0 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 AJD69521.1 - 0.051 13.5 0.1 0.42 10.5 0.0 2.5 3 0 0 3 3 3 0 NACHT domain AAA_27 PF13514.6 AJD69521.1 - 0.06 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain TK PF00265.18 AJD69521.1 - 0.062 13.2 0.0 0.14 12.0 0.0 1.5 2 0 0 2 2 2 0 Thymidine kinase Zeta_toxin PF06414.12 AJD69521.1 - 0.068 12.4 0.0 0.16 11.3 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 AJD69521.1 - 0.069 13.3 0.1 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 AJD69521.1 - 0.073 13.5 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 AJD69521.1 - 0.077 13.5 0.0 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_8 PF12780.7 AJD69521.1 - 0.11 11.8 0.3 6.1 6.1 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 Ala_racemase_N PF01168.20 AJD69522.1 - 7.5e-31 107.5 4.1 8.9e-31 107.2 4.1 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain DHO_dh PF01180.21 AJD69522.1 - 0.12 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase P5CR_dimer PF14748.6 AJD69523.1 - 4.2e-34 116.9 8.2 1.4e-33 115.2 8.2 1.9 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 AJD69523.1 - 1.4e-16 60.9 0.4 1.4e-16 60.9 0.4 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TetR_N PF00440.23 AJD69523.1 - 0.0084 15.9 1.9 0.032 14.0 1.9 2.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family NAD_Gly3P_dh_N PF01210.23 AJD69523.1 - 0.015 15.3 2.5 0.015 15.3 0.2 2.1 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2007 PF09413.10 AJD69523.1 - 0.087 13.0 0.3 0.29 11.3 0.1 2.1 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein Bac_DNA_binding PF00216.21 AJD69524.1 - 3.4e-13 49.6 0.5 3.4e-13 49.6 0.5 1.8 1 1 1 2 2 2 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AJD69524.1 - 0.0059 16.7 0.1 0.01 15.9 0.1 1.4 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif Peptidase_M23 PF01551.22 AJD69525.1 - 7e-20 71.1 0.1 9.2e-20 70.7 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M23 DUF3861 PF12977.7 AJD69526.1 - 4.5e-23 81.2 0.0 5.2e-23 81.0 0.0 1.0 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3861) DUF2116 PF09889.9 AJD69526.1 - 0.062 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF1439 PF07273.12 AJD69528.1 - 2.6e-08 33.8 0.0 3.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1439) DJ-1_PfpI PF01965.24 AJD69529.1 - 1.4e-49 168.1 0.0 1.6e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 AJD69529.1 - 8.6e-05 22.2 0.0 0.00017 21.3 0.0 1.6 1 1 0 1 1 1 1 C-terminal domain found in long catalases GATase PF00117.28 AJD69529.1 - 0.0003 20.6 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 AJD69529.1 - 0.0098 15.6 0.0 0.21 11.3 0.0 2.2 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase_3 PF07685.14 AJD69529.1 - 0.016 14.8 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MctB PF11382.8 AJD69529.1 - 0.061 13.0 0.7 0.17 11.6 0.1 2.0 2 1 0 2 2 2 0 Copper transport outer membrane protein, MctB SET PF00856.28 AJD69530.1 - 2.3e-20 73.7 0.1 1.5e-19 71.0 0.1 1.9 1 1 0 1 1 1 1 SET domain SAF PF08666.12 AJD69530.1 - 0.047 14.3 0.0 1.4 9.6 0.0 2.3 2 0 0 2 2 2 0 SAF domain Rrf2 PF02082.20 AJD69531.1 - 2.7e-22 78.9 0.3 5.5e-22 77.9 0.3 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 AJD69531.1 - 3.5e-07 30.0 0.5 1.3e-06 28.2 0.2 2.1 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.10 AJD69531.1 - 5.5e-07 29.3 1.1 6.3e-06 25.9 0.2 2.5 2 1 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 AJD69531.1 - 4.5e-06 26.4 0.1 6.6e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 AJD69531.1 - 1.2e-05 25.2 0.1 3.1e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 AJD69531.1 - 3.6e-05 23.6 0.0 8.4e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 AJD69531.1 - 5.2e-05 23.1 0.2 0.00023 21.1 0.0 2.1 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 AJD69531.1 - 6.9e-05 22.3 0.0 0.00018 21.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 AJD69531.1 - 0.00014 21.7 0.6 0.00051 19.9 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AJD69531.1 - 0.00049 20.2 0.3 0.00089 19.4 0.1 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 AJD69531.1 - 0.0015 18.1 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_36 PF13730.6 AJD69531.1 - 0.002 18.0 0.1 0.0078 16.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 AJD69531.1 - 0.008 15.8 0.1 0.018 14.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 AJD69531.1 - 0.035 14.0 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HemN_C PF06969.16 AJD69531.1 - 0.043 13.9 0.0 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain Rio2_N PF09202.11 AJD69531.1 - 0.05 13.8 0.0 0.077 13.2 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal YdaS_antitoxin PF15943.5 AJD69531.1 - 0.057 13.3 0.1 0.22 11.4 0.1 2.0 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 AJD69531.1 - 0.08 12.8 0.1 2.9 7.8 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_47 PF16221.5 AJD69531.1 - 0.08 12.5 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 winged helix-turn-helix DUF2574 PF10836.8 AJD69531.1 - 0.096 12.6 0.1 1.9 8.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2574) HTH_26 PF13443.6 AJD69531.1 - 0.1 13.0 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_27 PF13463.6 AJD69531.1 - 0.12 12.9 0.1 0.37 11.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 AJD69531.1 - 0.19 11.6 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit UPF0051 PF01458.17 AJD69532.1 - 1.4e-66 224.3 0.0 1.7e-66 224.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) SHOCT PF09851.9 AJD69532.1 - 0.051 13.3 0.2 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 Short C-terminal domain ABC_tran PF00005.27 AJD69533.1 - 7.9e-22 78.2 0.0 1e-21 77.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AJD69533.1 - 1.4e-06 27.9 0.3 0.016 14.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AJD69533.1 - 0.00043 20.2 0.1 0.00064 19.7 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 AJD69533.1 - 0.00064 19.6 0.2 0.068 13.0 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AJD69533.1 - 0.0017 18.0 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AJD69533.1 - 0.014 15.9 0.1 0.026 15.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 AJD69533.1 - 0.015 14.9 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AJD69533.1 - 0.033 14.1 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 AJD69533.1 - 0.048 14.2 0.1 0.21 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 AJD69533.1 - 0.067 13.4 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AJD69533.1 - 0.094 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 AJD69533.1 - 0.14 11.9 0.1 0.29 10.8 0.1 1.5 1 0 0 1 1 1 0 Cytidylate kinase AAA_13 PF13166.6 AJD69533.1 - 0.21 10.2 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.17 AJD69534.1 - 4.8e-64 216.0 1.4 6.5e-64 215.6 1.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Aminotran_5 PF00266.19 AJD69535.1 - 2.3e-144 481.0 0.0 2.6e-144 480.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 AJD69535.1 - 2.8e-08 33.3 0.0 3.1e-07 29.9 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 AJD69535.1 - 0.00052 18.6 0.0 0.00075 18.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 AJD69535.1 - 0.0054 16.1 0.2 0.048 13.0 0.1 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 AJD69535.1 - 0.032 13.5 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Acetyltransf_10 PF13673.7 AJD69536.1 - 1.6e-13 50.7 0.0 2.1e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD69536.1 - 7.2e-12 45.6 0.0 9.5e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AJD69536.1 - 1.5e-10 41.4 0.0 3.3e-10 40.3 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 AJD69536.1 - 0.0015 18.7 0.8 0.0055 16.9 0.3 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD69536.1 - 0.0098 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 AJD69536.1 - 0.015 15.3 0.1 0.3 11.2 0.1 2.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NodA PF02474.15 AJD69536.1 - 0.087 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein A (NodA) Rieske PF00355.26 AJD69537.1 - 1.8e-15 56.7 0.0 2.1e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 AJD69537.1 - 1.1e-09 38.2 0.0 1.2e-09 38.0 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain TonB_dep_Rec PF00593.24 AJD69538.1 - 5e-48 165.2 36.4 5e-48 165.2 36.4 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69538.1 - 3.5e-18 66.1 4.2 1e-17 64.7 4.2 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain PKHD_C PF18331.1 AJD69539.1 - 1.1e-20 73.4 0.2 2.6e-20 72.2 0.2 1.6 1 0 0 1 1 1 1 PKHD-type hydroxylase C-terminal domain 2OG-FeII_Oxy_3 PF13640.6 AJD69539.1 - 5.6e-14 52.8 0.0 8.3e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy PF03171.20 AJD69539.1 - 2.3e-05 24.8 0.0 3.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy_5 PF13759.6 AJD69539.1 - 0.089 13.2 0.1 0.37 11.2 0.0 2.0 2 1 0 2 2 2 0 Putative 2OG-Fe(II) oxygenase Sel1 PF08238.12 AJD69540.1 - 1.7e-23 82.5 35.4 5.5e-07 30.1 0.2 5.5 6 0 0 6 6 6 4 Sel1 repeat TPR_4 PF07721.14 AJD69540.1 - 0.0082 16.7 1.0 0.0082 16.7 1.0 6.6 5 1 0 5 5 5 1 Tetratricopeptide repeat Transglut_core PF01841.19 AJD69540.1 - 0.053 14.0 0.7 0.12 12.8 0.3 1.8 2 0 0 2 2 2 0 Transglutaminase-like superfamily TPR_10 PF13374.6 AJD69540.1 - 0.25 11.3 0.1 0.25 11.3 0.1 5.2 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_7 PF13176.6 AJD69540.1 - 0.47 10.6 4.1 5.7 7.2 0.6 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_19 PF14559.6 AJD69540.1 - 9 6.9 24.1 4.4 7.9 1.9 4.2 3 2 1 4 4 4 0 Tetratricopeptide repeat PepSY_TM_like_2 PF16357.5 AJD69541.1 - 4.6e-85 284.6 0.1 5.2e-85 284.4 0.1 1.0 1 0 0 1 1 1 1 Putative PepSY_TM-like PepSY_TM PF03929.16 AJD69541.1 - 6.1e-10 39.2 4.5 9.6e-10 38.6 3.1 1.7 1 1 0 1 1 1 1 PepSY-associated TM region Na_H_Exchanger PF00999.21 AJD69541.1 - 0.074 11.8 4.5 0.036 12.9 1.1 1.8 2 0 0 2 2 2 0 Sodium/hydrogen exchanger family DUF2269 PF10027.9 AJD69541.1 - 0.22 11.6 9.2 1.1 9.3 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) DUF2271 PF10029.9 AJD69542.1 - 1.7e-52 176.6 0.1 2e-52 176.4 0.1 1.0 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2271) YAF2_RYBP PF17219.3 AJD69542.1 - 0.05 13.2 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 Yaf2/RYBP C-terminal binding motif DUF4198 PF10670.9 AJD69543.1 - 3.1e-73 246.7 0.4 3.5e-73 246.5 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 AJD69543.1 - 0.015 15.5 0.0 0.44 10.8 0.0 2.4 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain ApbE PF02424.15 AJD69544.1 - 1e-77 261.2 0.0 1.2e-77 261.0 0.0 1.0 1 0 0 1 1 1 1 ApbE family Flavodoxin_1 PF00258.25 AJD69545.1 - 5.9e-26 91.4 0.0 1e-25 90.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin NAD_binding_1 PF00175.21 AJD69545.1 - 5.4e-11 43.1 0.0 8.8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain PepSY_TM PF03929.16 AJD69545.1 - 3 7.4 8.2 17 4.9 3.0 2.7 2 1 1 3 3 3 0 PepSY-associated TM region EF-hand_6 PF13405.6 AJD69546.1 - 1.7e-17 61.7 0.0 0.0017 18.2 0.0 4.6 3 1 2 5 5 5 4 EF-hand domain EF-hand_1 PF00036.32 AJD69546.1 - 3.5e-16 57.4 0.0 0.004 16.6 0.0 4.3 4 0 0 4 4 4 4 EF hand EF-hand_7 PF13499.6 AJD69546.1 - 1.4e-15 57.4 0.3 1.4e-07 31.8 0.0 2.4 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_5 PF13202.6 AJD69546.1 - 1.4e-11 43.4 3.0 0.0043 16.5 0.0 4.4 4 0 0 4 4 4 3 EF hand EF-hand_8 PF13833.6 AJD69546.1 - 5.3e-07 29.4 0.5 0.41 10.5 0.1 3.9 3 1 1 4 4 4 3 EF-hand domain pair SPARC_Ca_bdg PF10591.9 AJD69546.1 - 0.00019 21.7 0.0 0.58 10.5 0.0 2.6 2 1 0 2 2 2 2 Secreted protein acidic and rich in cysteine Ca binding region Dimerisation PF08100.11 AJD69546.1 - 0.00062 19.7 0.8 0.86 9.7 0.0 3.3 3 0 0 3 3 3 2 Dimerisation domain Sigma70_r1_1 PF03979.14 AJD69546.1 - 0.0076 16.3 0.2 0.76 9.9 0.2 2.9 2 1 1 3 3 3 1 Sigma-70 factor, region 1.1 Toprim_2 PF13155.6 AJD69546.1 - 0.046 14.2 0.4 4.9 7.7 0.1 2.8 1 1 0 2 2 2 0 Toprim-like EF-hand_9 PF14658.6 AJD69546.1 - 0.18 12.1 0.8 1.7 9.0 0.1 2.6 3 0 0 3 3 3 0 EF-hand domain HutD PF05962.11 AJD69547.1 - 3e-45 154.5 0.1 1.3e-22 80.6 0.3 2.1 2 0 0 2 2 2 2 HutD HHH_3 PF12836.7 AJD69548.1 - 1.2e-21 76.7 0.2 1.6e-21 76.3 0.2 1.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 AJD69548.1 - 2.7e-07 30.1 1.0 0.023 14.5 0.2 2.8 2 1 0 2 2 2 2 Helix-hairpin-helix motif HHH_6 PF14579.6 AJD69548.1 - 9.7e-05 22.6 0.1 0.0002 21.5 0.1 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif T2SSK PF03934.13 AJD69548.1 - 0.00024 20.6 0.1 0.00034 20.1 0.1 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein K HHH_5 PF14520.6 AJD69548.1 - 0.0057 17.2 1.0 0.36 11.5 0.2 2.2 1 1 1 2 2 2 2 Helix-hairpin-helix domain Peptidase_M20 PF01546.28 AJD69549.1 - 4e-21 75.7 0.0 5.3e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AJD69549.1 - 1.8e-13 50.4 0.0 2.9e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Transgly_assoc PF04226.13 AJD69550.1 - 4e-11 43.0 9.6 4e-11 43.0 9.6 1.8 2 0 0 2 2 2 1 Transglycosylase associated protein FecCD PF01032.18 AJD69550.1 - 0.00064 18.8 7.0 0.00073 18.6 7.0 1.0 1 0 0 1 1 1 1 FecCD transport family Phage_holin_4_2 PF04020.13 AJD69550.1 - 0.0042 17.7 4.0 0.0053 17.4 4.0 1.1 1 0 0 1 1 1 1 Mycobacterial 4 TMS phage holin, superfamily IV DUF5518 PF17647.1 AJD69550.1 - 0.037 14.2 10.7 0.048 13.8 10.7 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5518) DUF2070 PF09843.9 AJD69550.1 - 0.34 9.2 0.9 0.37 9.0 0.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MotA_ExbB PF01618.16 AJD69550.1 - 0.64 9.8 2.7 2.5 7.9 0.4 2.0 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family APH PF01636.23 AJD69551.1 - 1.3e-24 87.5 8.7 1.4e-24 87.3 8.1 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 AJD69551.1 - 0.0022 17.4 0.5 0.0035 16.8 0.5 1.3 1 0 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase EcKinase PF02958.20 AJD69551.1 - 0.0048 16.3 0.0 0.0086 15.4 0.0 1.4 1 0 0 1 1 1 1 Ecdysteroid kinase NTP_transferase PF00483.23 AJD69552.1 - 6.1e-15 55.5 0.0 1.5e-13 50.9 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 AJD69552.1 - 1.1e-09 38.9 0.0 1.6e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 AJD69552.1 - 0.00041 20.2 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bac_DnaA PF00308.18 AJD69553.1 - 7.9e-07 29.1 0.0 2.9e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein IstB_IS21 PF01695.17 AJD69553.1 - 9.2e-06 25.5 0.2 4e-05 23.4 0.0 2.2 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 AJD69553.1 - 0.00016 21.5 0.3 0.00032 20.5 0.3 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD69553.1 - 0.00022 21.7 0.2 0.0006 20.2 0.1 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AJD69553.1 - 0.00038 20.9 9.5 0.0007 20.0 9.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain PhoH PF02562.16 AJD69553.1 - 0.0011 18.4 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.6 AJD69553.1 - 0.003 17.9 0.0 0.0031 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 AJD69553.1 - 0.0052 16.7 0.2 0.23 11.4 0.1 2.3 1 1 1 2 2 2 1 NACHT domain AAA_22 PF13401.6 AJD69553.1 - 0.019 15.2 1.1 0.12 12.6 1.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 AJD69553.1 - 0.021 14.9 0.1 0.16 12.0 0.0 2.1 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) TsaE PF02367.17 AJD69553.1 - 0.037 14.0 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RuvB_N PF05496.12 AJD69553.1 - 0.043 13.6 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 AJD69553.1 - 0.07 12.7 7.1 1.8 8.1 7.0 3.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 AJD69553.1 - 0.093 13.1 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 AJD69553.1 - 0.13 12.4 0.5 0.4 10.8 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 AJD69553.1 - 0.14 11.9 0.0 0.2 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 AJD69553.1 - 0.16 11.2 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CbiA PF01656.23 AJD69553.1 - 0.19 11.8 0.0 0.47 10.5 0.0 1.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AI-2E_transport PF01594.16 AJD69554.1 - 1.4e-58 198.7 32.2 1.7e-58 198.3 32.2 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF2066 PF09839.9 AJD69555.1 - 9.6e-60 201.9 1.3 1.3e-59 201.5 1.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2066) AIRS_C PF02769.22 AJD69556.1 - 7e-38 130.2 0.2 1.1e-37 129.6 0.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 AJD69556.1 - 4.3e-14 52.9 0.2 7.8e-14 52.1 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Abhydrolase_9_N PF15420.6 AJD69557.1 - 0.0073 16.3 0.4 0.012 15.7 0.4 1.3 1 0 0 1 1 1 1 Alpha/beta-hydrolase family N-terminus CitMHS PF03600.16 AJD69557.1 - 0.16 11.2 6.7 0.2 10.8 6.7 1.2 1 0 0 1 1 1 0 Citrate transporter DUF2070 PF09843.9 AJD69557.1 - 0.82 7.9 3.6 0.93 7.7 3.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Formyl_trans_N PF00551.19 AJD69558.1 - 6.2e-52 176.0 0.0 7.4e-52 175.7 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase DUF4129 PF13559.6 AJD69558.1 - 1.4 9.2 8.0 4.4 7.6 1.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) DUF3108 PF11306.8 AJD69559.1 - 3.5e-28 99.1 0.2 4.2e-28 98.9 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3108) DUF3108 PF11306.8 AJD69560.1 - 7.3e-19 68.6 0.1 9.9e-19 68.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3108) Yip1 PF04893.17 AJD69561.1 - 0.042 13.6 0.3 0.057 13.1 0.3 1.1 1 0 0 1 1 1 0 Yip1 domain EF-hand_1 PF00036.32 AJD69561.1 - 0.079 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 EF hand EPSP_synthase PF00275.20 AJD69562.1 - 9.6e-113 377.0 3.2 1.1e-112 376.8 3.2 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BolA PF01722.18 AJD69563.1 - 2.7e-18 66.0 0.0 3.1e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein SIS PF01380.22 AJD69564.1 - 6.8e-32 110.1 0.1 1.5e-31 109.0 0.2 1.5 2 0 0 2 2 2 1 SIS domain CBS PF00571.28 AJD69564.1 - 8.4e-21 74.2 0.7 1.1e-08 35.3 0.1 3.5 3 0 0 3 3 3 2 CBS domain TruB_C PF09142.11 AJD69564.1 - 0.0046 16.7 1.7 0.02 14.7 0.0 2.9 4 0 0 4 4 4 1 tRNA Pseudouridine synthase II, C terminal Regnase_1_C PF18561.1 AJD69564.1 - 0.017 14.8 0.4 0.046 13.5 0.1 1.9 2 0 0 2 2 2 0 Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain DUF2529 PF10740.9 AJD69564.1 - 0.027 14.1 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) Hydrolase_3 PF08282.12 AJD69565.1 - 2.9e-11 43.6 0.0 6e-07 29.5 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD69565.1 - 7.3e-08 33.0 1.1 0.00036 20.9 0.1 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 AJD69565.1 - 0.0021 18.2 0.5 0.28 11.3 0.0 2.8 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 AJD69565.1 - 0.0097 16.3 5.2 2.7 8.4 0.5 3.5 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 AJD69565.1 - 0.014 14.9 0.0 0.051 13.1 0.0 1.7 1 1 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 AJD69565.1 - 0.014 15.5 0.1 0.044 13.9 0.1 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase LptC PF06835.13 AJD69566.1 - 4.8e-41 140.3 0.0 5.5e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related OstA PF03968.14 AJD69567.1 - 1.1e-25 90.1 3.3 1.3e-25 89.8 3.3 1.1 1 0 0 1 1 1 1 OstA-like protein LptC PF06835.13 AJD69567.1 - 0.037 13.6 2.7 0.18 11.3 2.9 1.7 1 1 1 2 2 2 0 Lipopolysaccharide-assembly, LptC-related PATR PF12951.7 AJD69567.1 - 0.12 12.5 0.1 0.43 10.7 0.0 2.0 2 0 0 2 2 2 0 Passenger-associated-transport-repeat Siva PF05458.12 AJD69567.1 - 0.15 11.7 0.3 1.7 8.3 0.1 2.0 1 1 1 2 2 2 0 Cd27 binding protein (Siva) ABC_tran PF00005.27 AJD69568.1 - 7.9e-33 113.9 0.0 1.2e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AJD69568.1 - 2.2e-06 27.5 0.1 4.8e-06 26.3 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AJD69568.1 - 8.2e-05 22.6 0.0 0.065 13.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD69568.1 - 0.0061 16.0 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 AJD69568.1 - 0.017 14.9 0.0 0.02 14.6 0.0 1.3 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AJD69568.1 - 0.033 14.4 0.1 0.21 11.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 AJD69568.1 - 0.052 14.0 0.5 0.089 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain Sigma54_DBD PF04552.13 AJD69569.1 - 7e-64 214.4 0.0 1.1e-63 213.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 AJD69569.1 - 1.6e-50 171.5 0.0 7.3e-50 169.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 AJD69569.1 - 2.9e-14 52.6 2.3 5.4e-14 51.8 2.3 1.5 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) HTH_38 PF13936.6 AJD69569.1 - 4.7e-05 23.1 0.3 0.0002 21.1 0.3 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69569.1 - 0.0022 17.7 0.4 0.015 15.1 0.1 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 AJD69569.1 - 0.0023 17.8 1.1 0.018 15.0 0.3 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 AJD69569.1 - 0.0033 17.2 0.2 0.029 14.2 0.2 2.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 AJD69569.1 - 0.016 14.7 0.6 0.072 12.6 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 AJD69569.1 - 0.023 14.5 5.3 0.55 10.1 0.2 3.6 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 AJD69569.1 - 0.067 13.1 0.6 0.38 10.7 0.1 2.6 3 0 0 3 3 3 0 MarR family HTH_24 PF13412.6 AJD69569.1 - 0.068 12.7 0.1 1.1 8.9 0.1 2.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_35 PF13693.6 AJD69569.1 - 0.097 12.7 0.3 0.58 10.2 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 AJD69569.1 - 0.13 12.0 0.3 0.56 9.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_11 PF08279.12 AJD69569.1 - 0.26 11.3 1.5 1.1 9.3 0.0 2.9 4 0 0 4 4 4 0 HTH domain Ribosomal_S30AE PF02482.19 AJD69570.1 - 4.8e-23 81.7 0.1 5.6e-23 81.5 0.1 1.0 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein PTS_EIIA_2 PF00359.22 AJD69571.1 - 2.9e-30 105.1 0.0 3.4e-30 104.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Hpr_kinase_C PF07475.12 AJD69572.1 - 1.3e-56 190.8 0.0 1.7e-56 190.4 0.0 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain Hpr_kinase_N PF02603.16 AJD69572.1 - 3.4e-23 82.0 0.0 5.8e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 HPr Serine kinase N terminus AAA_16 PF13191.6 AJD69572.1 - 0.003 18.0 0.1 0.023 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 AJD69572.1 - 0.01 15.6 0.1 0.052 13.3 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD69572.1 - 0.057 13.7 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD69572.1 - 0.067 13.7 0.0 0.12 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PucR PF07905.11 AJD69572.1 - 0.077 13.3 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family Sigma54_activat PF00158.26 AJD69572.1 - 0.17 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2075 PF09848.9 AJD69572.1 - 0.17 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CobU PF02283.16 AJD69572.1 - 0.19 11.3 0.2 0.38 10.3 0.0 1.5 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ATP_bind_2 PF03668.15 AJD69573.1 - 2e-95 319.4 0.0 2.2e-95 319.2 0.0 1.0 1 0 0 1 1 1 1 P-loop ATPase protein family AAA_33 PF13671.6 AJD69573.1 - 9.4e-06 25.8 1.4 0.035 14.3 0.1 3.3 3 1 1 4 4 4 2 AAA domain AAA_22 PF13401.6 AJD69573.1 - 0.035 14.4 0.0 0.079 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain Integrase_1 PF12835.7 AJD69573.1 - 0.037 14.1 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Integrase EIIA-man PF03610.16 AJD69574.1 - 8.4e-13 48.6 0.0 9.8e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 PTS system fructose IIA component U83 PF17465.2 AJD69574.1 - 0.11 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Chemokine-like protein, HHV-6 U83 gene product PTS-HPr PF00381.19 AJD69575.1 - 5.1e-27 93.9 0.6 5.6e-27 93.8 0.6 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PEP-utilizers_C PF02896.18 AJD69576.1 - 1.4e-95 319.8 0.0 1.9e-95 319.4 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 AJD69576.1 - 2e-23 82.7 2.4 2e-23 82.7 2.4 2.4 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 AJD69576.1 - 3.2e-20 71.6 1.2 1.4e-19 69.6 1.4 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 AJD69576.1 - 6.6e-07 28.7 0.0 0.00052 19.2 0.0 2.4 2 0 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family EH_Signature PF15611.6 AJD69576.1 - 0.098 12.1 0.1 0.21 11.0 0.1 1.5 1 0 0 1 1 1 0 EH_Signature domain IMD PF08397.11 AJD69576.1 - 0.16 11.4 0.0 0.34 10.3 0.0 1.5 1 0 0 1 1 1 0 IRSp53/MIM homology domain DUF4140 PF13600.6 AJD69576.1 - 0.16 12.4 5.7 5.6 7.5 0.8 3.4 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) MscS_porin PF12795.7 AJD69576.1 - 0.73 9.3 6.7 0.42 10.1 1.0 2.8 3 0 0 3 3 3 0 Mechanosensitive ion channel porin domain FlxA PF14282.6 AJD69576.1 - 1.3 9.1 4.6 1.3 9.0 0.1 2.3 2 0 0 2 2 2 0 FlxA-like protein MgtE_N PF03448.17 AJD69577.1 - 3.2e-27 95.1 2.1 3.2e-27 95.1 2.1 2.2 2 0 0 2 2 2 1 MgtE intracellular N domain MgtE PF01769.16 AJD69577.1 - 5.2e-27 94.7 10.8 5.2e-27 94.7 10.8 1.5 2 0 0 2 2 2 1 Divalent cation transporter CBS PF00571.28 AJD69577.1 - 1.8e-07 31.5 8.5 0.00099 19.5 0.5 3.4 3 1 0 3 3 3 2 CBS domain RPAP1_N PF08621.10 AJD69577.1 - 0.45 10.3 2.2 27 4.6 0.0 2.9 3 0 0 3 3 3 0 RPAP1-like, N-terminal Peptidase_S9 PF00326.21 AJD69578.1 - 6.9e-11 42.0 0.4 5.8e-10 39.0 0.4 2.1 1 1 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 AJD69578.1 - 1.2e-09 37.8 0.1 0.0018 17.6 0.0 2.9 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Esterase PF00756.20 AJD69578.1 - 1.8e-07 31.1 0.1 7.3e-06 25.8 0.1 2.1 1 1 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.16 AJD69578.1 - 3.9e-07 30.1 0.0 0.0019 18.0 0.0 3.0 1 1 1 2 2 2 2 Phospholipase/Carboxylesterase Esterase_phd PF10503.9 AJD69578.1 - 3.5e-06 26.7 0.4 7.7e-05 22.3 0.1 2.2 2 0 0 2 2 2 1 Esterase PHB depolymerase Abhydrolase_3 PF07859.13 AJD69578.1 - 0.00034 20.5 0.7 0.048 13.5 0.7 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 AJD69578.1 - 0.0032 17.2 0.4 0.035 13.7 0.2 2.4 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 AJD69578.1 - 0.015 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family LIP PF03583.14 AJD69578.1 - 0.058 12.7 0.1 0.099 12.0 0.1 1.3 1 0 0 1 1 1 0 Secretory lipase FSH1 PF03959.13 AJD69578.1 - 0.2 11.3 0.0 0.65 9.6 0.0 1.8 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 AJD69578.1 - 0.24 12.0 7.4 1.6 9.3 1.2 2.3 1 1 1 2 2 2 0 Alpha/beta hydrolase family Cyt_bd_oxida_II PF02322.15 AJD69579.1 - 2.8e-92 309.3 38.4 3.2e-92 309.1 38.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF202 PF02656.15 AJD69579.1 - 0.05 14.0 1.0 0.05 14.0 1.0 5.0 4 2 1 5 5 5 0 Domain of unknown function (DUF202) DUF4637 PF15470.6 AJD69579.1 - 0.38 10.5 1.1 0.47 10.2 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4637) MFS_MOT1 PF16983.5 AJD69579.1 - 4.2 7.8 19.9 1.5 9.3 1.4 3.8 2 2 0 3 3 3 0 Molybdate transporter of MFS superfamily Cyt_bd_oxida_I PF01654.17 AJD69580.1 - 9.2e-149 495.6 30.5 1e-148 495.4 30.5 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Peptidase_M19 PF01244.21 AJD69581.1 - 1.5e-44 152.5 0.0 2e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) AA_permease PF00324.21 AJD69582.1 - 8.3e-93 311.5 48.3 1e-92 311.3 48.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 AJD69582.1 - 5.3e-40 137.6 51.8 6.2e-40 137.3 51.8 1.0 1 0 0 1 1 1 1 Amino acid permease Pec_lyase_C PF00544.19 AJD69583.1 - 1.1e-46 159.1 7.2 1.5e-46 158.6 7.2 1.2 1 0 0 1 1 1 1 Pectate lyase Beta_helix PF13229.6 AJD69583.1 - 0.078 12.8 28.0 0.016 15.0 21.0 2.4 2 1 1 3 3 3 0 Right handed beta helix region GPAT_N PF14829.6 AJD69583.1 - 2.1 8.4 4.2 0.91 9.6 0.1 2.5 3 0 0 3 3 3 0 Glycerol-3-phosphate acyltransferase N-terminal Abhydrolase_1 PF00561.20 AJD69584.1 - 4.1e-26 92.2 0.2 1.4e-25 90.4 0.2 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD69584.1 - 9e-17 61.1 0.9 3e-16 59.4 0.9 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD69584.1 - 1.6e-16 61.6 11.7 2e-16 61.3 11.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 AJD69584.1 - 0.00021 21.0 0.1 0.0015 18.2 0.1 1.9 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) OmdA PF13376.6 AJD69584.1 - 0.13 12.3 0.2 0.34 11.0 0.2 1.7 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated Autoind_bind PF03472.15 AJD69585.1 - 4e-23 81.5 0.2 5.8e-23 81.0 0.2 1.3 1 0 0 1 1 1 1 Autoinducer binding domain GerE PF00196.19 AJD69585.1 - 3.6e-18 64.9 0.5 6e-18 64.1 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD69585.1 - 0.00024 20.7 0.3 0.00045 19.8 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 AJD69585.1 - 0.0016 18.2 0.2 0.0035 17.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD69585.1 - 0.0039 16.7 0.8 0.0061 16.1 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 AJD69585.1 - 0.038 13.9 0.1 0.076 13.0 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 AJD69585.1 - 0.051 13.4 0.2 0.11 12.3 0.2 1.6 1 0 0 1 1 1 0 Homeodomain-like domain AA_permease_2 PF13520.6 AJD69586.1 - 2.9e-34 118.7 36.6 3.9e-34 118.2 36.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD69586.1 - 9.1e-32 110.3 28.7 1.3e-31 109.8 28.7 1.1 1 0 0 1 1 1 1 Amino acid permease DUF5592 PF17332.2 AJD69586.1 - 0.88 10.2 6.2 18 5.9 0.2 4.1 3 1 1 4 4 4 0 Family of unknown function (DUF5592) Lipase_3 PF01764.25 AJD69587.1 - 2.3e-10 40.5 0.0 3.4e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Lipase (class 3) Trypsin_2 PF13365.6 AJD69589.1 - 3.4e-07 31.3 0.8 3.4e-07 31.3 0.8 1.8 2 0 0 2 2 2 1 Trypsin-like peptidase domain Tai4 PF16695.5 AJD69590.1 - 0.00085 19.8 0.1 0.0012 19.3 0.1 1.3 1 0 0 1 1 1 1 Type VI secretion system (T6SS), amidase immunity protein Lactamase_B_2 PF12706.7 AJD69591.1 - 2.7e-20 72.8 1.5 3.8e-20 72.3 1.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 AJD69591.1 - 2.2e-10 40.9 1.3 2.7e-09 37.3 1.3 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 AJD69591.1 - 0.028 14.1 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 tRNase Z endonuclease Trp_halogenase PF04820.14 AJD69592.1 - 1.5e-192 640.5 0.0 1.8e-192 640.3 0.0 1.0 1 0 0 1 1 1 1 Tryptophan halogenase Pyr_redox_2 PF07992.14 AJD69592.1 - 0.0007 18.9 0.0 0.27 10.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 AJD69592.1 - 0.0024 17.0 0.1 0.27 10.2 0.0 2.9 3 0 0 3 3 3 1 Lycopene cyclase protein DAO PF01266.24 AJD69592.1 - 0.0027 17.3 0.4 0.0059 16.2 0.4 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 AJD69592.1 - 0.0037 17.2 0.1 0.7 9.9 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 AJD69592.1 - 0.009 15.4 0.2 3.9 6.7 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD69592.1 - 0.15 12.3 0.2 0.53 10.5 0.2 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Cupin_8 PF13621.6 AJD69593.1 - 4.9e-57 193.6 0.0 6e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 Cupin-like domain Cupin_4 PF08007.12 AJD69593.1 - 0.00071 19.1 0.1 0.0015 18.1 0.1 1.6 1 1 0 1 1 1 1 Cupin superfamily protein JmjC PF02373.22 AJD69593.1 - 0.054 13.9 0.1 0.091 13.2 0.1 1.3 1 0 0 1 1 1 0 JmjC domain, hydroxylase Cupin_2 PF07883.11 AJD69593.1 - 0.078 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Cupin domain SapC PF07277.11 AJD69594.1 - 4e-65 219.5 0.0 4.7e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 SapC TonB_dep_Rec PF00593.24 AJD69595.1 - 1.2e-32 114.5 43.4 1.2e-32 114.5 43.4 2.6 1 1 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69595.1 - 7e-15 55.5 0.9 2.5e-14 53.8 0.9 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Peptidase_M1 PF01433.20 AJD69596.1 - 8.8e-14 51.6 0.0 1.6e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M10 PF00413.24 AJD69596.1 - 0.075 12.9 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Matrixin MerR-DNA-bind PF09278.11 AJD69597.1 - 1.4e-17 63.9 2.1 2.1e-17 63.4 2.1 1.3 1 0 0 1 1 1 1 MerR, DNA binding MerR PF00376.23 AJD69597.1 - 3.3e-15 55.6 0.2 2.1e-14 53.0 0.1 2.2 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 AJD69597.1 - 9.4e-14 51.3 0.0 1.5e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_3 PF01381.22 AJD69597.1 - 0.02 14.9 0.1 0.32 11.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix TetR_N PF00440.23 AJD69597.1 - 0.07 12.9 0.2 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 AJD69597.1 - 0.5 10.7 7.0 0.09 13.1 1.4 2.6 3 1 0 3 3 3 0 Helix-turn-helix domain MFS_1 PF07690.16 AJD69598.1 - 3.7e-27 95.2 77.7 3.1e-24 85.6 52.2 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD69598.1 - 6.4e-07 28.6 11.1 6.4e-07 28.6 11.1 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter GSP_synth PF03738.14 AJD69600.1 - 5.9e-146 486.5 0.0 6.7e-146 486.3 0.0 1.0 1 0 0 1 1 1 1 Glutathionylspermidine synthase preATP-grasp DUF1190 PF06693.11 AJD69601.1 - 2.5e-30 106.0 1.3 3.2e-30 105.6 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1190) DUF350 PF03994.14 AJD69602.1 - 5.8e-24 84.0 17.3 1.3e-13 50.8 2.0 2.1 2 0 0 2 2 2 2 Domain of Unknown Function (DUF350) DUF2491 PF10679.9 AJD69603.1 - 4.2e-66 222.1 0.0 4.8e-66 221.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2491) Ion_trans_2 PF07885.16 AJD69604.1 - 1.3e-09 37.9 3.2 2.4e-09 37.0 3.2 1.5 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 AJD69604.1 - 0.00021 21.5 0.1 0.00034 20.8 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain PspA_IM30 PF04012.12 AJD69605.1 - 9.2e-38 130.0 28.0 1e-37 129.8 28.0 1.0 1 0 0 1 1 1 1 PspA/IM30 family Fez1 PF06818.15 AJD69605.1 - 0.22 12.0 13.2 0.41 11.1 13.2 1.4 1 1 0 1 1 1 0 Fez1 DUF724 PF05266.14 AJD69605.1 - 0.24 11.2 8.3 0.082 12.7 3.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF2730 PF10805.8 AJD69605.1 - 0.25 11.5 3.7 0.77 9.9 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Fib_alpha PF08702.10 AJD69605.1 - 0.36 11.0 4.7 1.7 8.8 4.0 2.2 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.19 AJD69605.1 - 0.45 8.4 4.2 0.52 8.2 4.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.12 AJD69605.1 - 0.46 11.1 10.8 0.26 11.9 1.3 3.0 3 0 0 3 3 3 0 SlyX DUF4200 PF13863.6 AJD69605.1 - 0.5 10.8 12.5 0.04 14.3 6.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Spc7 PF08317.11 AJD69605.1 - 0.78 8.6 15.5 0.31 9.9 1.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Prefoldin PF02996.17 AJD69605.1 - 1.7 8.6 13.3 2.6 8.0 1.3 3.1 3 0 0 3 3 3 0 Prefoldin subunit UPF0242 PF06785.11 AJD69605.1 - 1.9 8.6 6.8 0.65 10.1 4.3 1.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus CCDC-167 PF15188.6 AJD69605.1 - 6.9 7.1 6.8 15 6.0 2.8 2.9 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 DUF2170 PF09938.9 AJD69606.1 - 1.7e-41 141.2 0.0 1.8e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2170) Putative_PNPOx PF01243.20 AJD69607.1 - 1.4e-27 95.7 0.1 2.1e-27 95.1 0.1 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PNP_phzG_C PF10590.9 AJD69607.1 - 1.2e-14 54.1 3.9 2.1e-14 53.3 3.9 1.4 1 0 0 1 1 1 1 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Pyridox_oxase_2 PF12766.7 AJD69607.1 - 0.00097 19.7 0.0 0.0016 19.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase SKI PF01202.22 AJD69608.1 - 9.9e-48 162.2 0.0 1.1e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 AJD69608.1 - 3.2e-06 27.4 0.0 6.3e-06 26.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AJD69608.1 - 5e-05 23.9 0.0 7.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 AJD69608.1 - 0.0011 19.1 0.1 0.003 17.7 0.0 1.6 1 1 1 2 2 2 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 AJD69608.1 - 0.0038 17.0 0.0 0.0082 15.9 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase CoaE PF01121.20 AJD69608.1 - 0.0043 16.7 0.1 0.03 14.0 0.0 1.9 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_16 PF13191.6 AJD69608.1 - 0.0066 16.8 0.7 0.032 14.6 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 AJD69608.1 - 0.019 15.4 0.0 0.033 14.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 AJD69608.1 - 0.021 15.2 0.1 0.12 12.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain Enkurin PF13864.6 AJD69608.1 - 0.035 14.5 0.0 0.12 12.9 0.0 1.8 2 0 0 2 2 2 0 Calmodulin-binding AAA_5 PF07728.14 AJD69608.1 - 0.046 13.7 0.0 0.19 11.7 0.0 1.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) dNK PF01712.19 AJD69608.1 - 0.058 13.2 0.0 1.4 8.7 0.0 2.1 1 1 0 2 2 2 0 Deoxynucleoside kinase AAA_22 PF13401.6 AJD69608.1 - 0.065 13.5 0.1 0.12 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 AJD69608.1 - 0.1 12.0 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 AJD69608.1 - 0.14 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DHQ_synthase PF01761.20 AJD69609.1 - 1.6e-102 342.2 0.0 1.8e-102 342.0 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 AJD69609.1 - 5.5e-12 45.9 0.0 1.3e-11 44.7 0.0 1.6 1 1 1 2 2 2 1 Iron-containing alcohol dehydrogenase AlaDh_PNT_C PF01262.21 AJD69609.1 - 0.047 13.0 0.6 0.081 12.2 0.6 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fe-ADH PF00465.19 AJD69609.1 - 0.055 12.3 5.9 0.023 13.5 1.9 2.1 2 1 0 2 2 2 0 Iron-containing alcohol dehydrogenase WGR PF05406.15 AJD69610.1 - 0.00033 20.7 0.0 0.00038 20.5 0.0 1.0 1 0 0 1 1 1 1 WGR domain URO-D PF01208.17 AJD69611.1 - 1.8e-138 461.5 0.0 2e-138 461.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RebB PF11747.8 AJD69612.1 - 6.1e-30 103.1 16.7 9.4e-30 102.5 16.7 1.3 1 0 0 1 1 1 1 Killing trait RebB PF11747.8 AJD69613.1 - 3.4e-30 104.0 15.9 4.6e-30 103.5 15.9 1.2 1 0 0 1 1 1 1 Killing trait RebB PF11747.8 AJD69614.1 - 1e-28 99.2 14.6 1.4e-28 98.8 14.6 1.2 1 0 0 1 1 1 1 Killing trait RebB PF11747.8 AJD69615.1 - 1.1e-30 105.5 12.6 1.5e-30 105.1 12.6 1.2 1 0 0 1 1 1 1 Killing trait HA70_C PF17993.1 AJD69615.1 - 0.041 13.9 0.2 0.071 13.2 0.2 1.4 1 1 0 1 1 1 0 Haemagglutinin 70 C-terminal domain RebB PF11747.8 AJD69617.1 - 3.6e-21 75.0 9.3 3.6e-21 75.0 9.3 3.2 3 1 0 3 3 3 1 Killing trait HrpE PF06188.12 AJD69619.1 - 0.012 15.5 0.2 0.061 13.2 0.1 2.1 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E RGM_N PF06535.12 AJD69619.1 - 0.16 12.2 0.0 0.24 11.6 0.0 1.2 1 0 0 1 1 1 0 Repulsive guidance molecule (RGM) N-terminus OmpH PF03938.14 AJD69620.1 - 0.093 13.1 13.1 0.11 12.9 13.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4407 PF14362.6 AJD69620.1 - 0.35 10.2 16.8 0.36 10.1 16.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1822 PF08852.11 AJD69620.1 - 0.78 8.7 6.5 0.91 8.5 6.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) DUF4400 PF14348.6 AJD69620.1 - 1.5 8.3 8.4 1.8 8.0 8.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) DUF3584 PF12128.8 AJD69620.1 - 2.3 5.6 13.8 2.6 5.4 13.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) tRNA-synt_His PF13393.6 AJD69620.1 - 2.7 7.2 10.0 3.2 6.9 10.0 1.0 1 0 0 1 1 1 0 Histidyl-tRNA synthetase DUF1906 PF08924.11 AJD69621.1 - 4.1e-16 59.7 0.4 4.6e-16 59.5 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1906) DUF2235 PF09994.9 AJD69623.1 - 0.078 12.3 0.0 0.43 9.9 0.0 2.2 2 1 0 2 2 2 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) HTH_18 PF12833.7 AJD69624.1 - 4.4e-23 81.4 0.6 4.4e-23 81.4 0.6 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma54_activ_2 PF14532.6 AJD69624.1 - 5.9e-19 68.6 0.0 1.1e-18 67.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_AraC PF00165.23 AJD69624.1 - 4.2e-15 55.4 0.0 1.8e-08 34.3 0.0 2.9 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Sigma54_activat PF00158.26 AJD69624.1 - 1.2e-14 54.4 0.0 3.6e-07 30.1 0.0 2.8 2 1 1 3 3 3 2 Sigma-54 interaction domain GAF_2 PF13185.6 AJD69624.1 - 0.0068 16.7 0.0 0.027 14.8 0.0 2.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 AJD69624.1 - 0.07 13.8 0.7 0.48 11.1 0.1 2.5 2 0 0 2 2 2 0 GAF domain MFS_1 PF07690.16 AJD69625.1 - 5.4e-51 173.6 80.7 1.3e-43 149.3 55.9 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD69625.1 - 1.6e-07 30.5 1.8 1.6e-07 30.5 1.8 3.8 2 1 0 3 3 3 1 Sugar (and other) transporter TRI12 PF06609.13 AJD69625.1 - 7.9e-06 24.6 8.8 1.4e-05 23.8 8.8 1.5 1 1 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.13 AJD69625.1 - 1e-05 24.2 34.4 3.1e-05 22.6 14.5 2.5 2 1 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.6 AJD69625.1 - 0.00049 18.8 5.7 0.00049 18.8 5.7 3.2 1 1 1 3 3 3 2 MFS/sugar transport protein HATPase_c PF02518.26 AJD69626.1 - 1e-26 93.6 0.0 2.1e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Reg_prop PF07494.11 AJD69626.1 - 1.1e-26 89.5 26.4 0.0029 17.6 0.0 12.3 13 0 0 13 13 13 7 Two component regulator propeller Response_reg PF00072.24 AJD69626.1 - 3.7e-20 72.2 0.0 6.2e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AJD69626.1 - 7.8e-17 61.1 1.2 1.3e-16 60.4 0.2 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Y_Y_Y PF07495.13 AJD69626.1 - 1.2e-15 57.2 0.0 2.2e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Y_Y_Y domain SGL PF08450.12 AJD69626.1 - 1.7e-08 34.4 0.9 0.0037 16.9 0.0 5.6 2 2 2 4 4 4 2 SMP-30/Gluconolactonase/LRE-like region DUF5074 PF16819.5 AJD69626.1 - 0.00057 19.9 0.1 9.6 6.3 0.0 5.6 7 0 0 7 7 7 1 Domain of unknown function (DUF5074) DUF4381 PF14316.6 AJD69626.1 - 0.086 13.1 3.7 0.19 12.0 3.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Frataxin_Cyay PF01491.16 AJD69626.1 - 0.2 11.8 0.2 42 4.3 0.0 3.7 4 0 0 4 4 4 0 Frataxin-like domain Response_reg PF00072.24 AJD69627.1 - 3.5e-36 123.8 0.0 1.4e-19 70.3 0.0 2.4 2 0 0 2 2 2 2 Response regulator receiver domain Reg_prop PF07494.11 AJD69627.1 - 1.5e-28 95.2 26.9 0.0073 16.4 0.1 13.0 12 0 0 12 12 12 8 Two component regulator propeller HATPase_c PF02518.26 AJD69627.1 - 1.5e-25 89.9 0.1 6.7e-25 87.8 0.0 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD69627.1 - 8e-17 61.0 3.6 2.1e-16 59.7 0.3 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Y_Y_Y PF07495.13 AJD69627.1 - 7.7e-15 54.6 0.0 1.2e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Y_Y_Y domain DUF5074 PF16819.5 AJD69627.1 - 0.00012 22.1 0.0 18 5.4 0.0 6.3 8 0 0 8 8 8 1 Domain of unknown function (DUF5074) DUF4381 PF14316.6 AJD69627.1 - 0.0051 17.1 1.7 0.018 15.3 1.7 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) HATPase_c PF02518.26 AJD69629.1 - 1.4e-25 90.0 0.0 2.7e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Reg_prop PF07494.11 AJD69629.1 - 8.6e-20 68.3 14.9 0.0064 16.6 0.0 11.0 11 0 0 11 11 11 5 Two component regulator propeller Response_reg PF00072.24 AJD69629.1 - 1.3e-19 70.4 0.0 3.4e-19 69.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AJD69629.1 - 5.9e-16 58.3 0.4 1.9e-15 56.6 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Y_Y_Y PF07495.13 AJD69629.1 - 1.8e-09 37.4 0.0 2.9e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Y_Y_Y domain HATPase_c_2 PF13581.6 AJD69629.1 - 0.076 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain YceI PF04264.13 AJD69630.1 - 6.5e-37 127.3 0.0 7.6e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 YceI-like domain DUF1921 PF09081.10 AJD69630.1 - 0.091 13.0 0.1 0.23 11.7 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1921) Ni_hydr_CYTB PF01292.20 AJD69631.1 - 4.9e-32 111.0 14.7 5.6e-32 110.8 14.7 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B561 PF03188.16 AJD69631.1 - 0.014 15.5 0.9 0.014 15.5 0.9 2.3 2 1 0 3 3 3 0 Eukaryotic cytochrome b561 DUF1206 PF06724.11 AJD69631.1 - 0.62 10.2 0.1 0.62 10.2 0.1 3.1 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1206) YceI PF04264.13 AJD69632.1 - 1.2e-25 90.8 0.0 1.5e-25 90.5 0.0 1.1 1 0 0 1 1 1 1 YceI-like domain DUF836 PF05768.14 AJD69633.1 - 4.3e-12 46.3 0.0 5e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 AJD69633.1 - 0.1 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin SDH_alpha PF03313.15 AJD69634.1 - 2e-105 352.2 2.0 2.5e-105 351.8 2.0 1.1 1 0 0 1 1 1 1 Serine dehydratase alpha chain SDH_beta PF03315.15 AJD69634.1 - 1.1e-58 198.0 0.0 1.8e-58 197.3 0.0 1.4 1 0 0 1 1 1 1 Serine dehydratase beta chain Abhydrolase_1 PF00561.20 AJD69635.1 - 4e-22 79.1 0.1 4.1e-21 75.8 0.1 2.1 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD69635.1 - 2.5e-21 77.3 0.1 3.2e-21 76.9 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD69635.1 - 5.7e-16 58.5 0.1 1.1e-15 57.6 0.1 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DUF1057 PF06342.12 AJD69635.1 - 1.9e-05 23.9 0.0 3.3e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) Esterase PF00756.20 AJD69635.1 - 0.00061 19.5 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative esterase Ndr PF03096.14 AJD69635.1 - 0.00088 18.1 0.0 0.0016 17.2 0.0 1.4 1 0 0 1 1 1 1 Ndr family DUF915 PF06028.11 AJD69635.1 - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF915) Chlorophyllase2 PF12740.7 AJD69635.1 - 0.0013 17.8 0.0 0.0021 17.0 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme PGAP1 PF07819.13 AJD69635.1 - 0.0082 15.9 0.1 0.014 15.1 0.1 1.3 1 0 0 1 1 1 1 PGAP1-like protein Thioesterase PF00975.20 AJD69635.1 - 0.011 15.9 0.1 0.022 14.9 0.1 1.5 1 0 0 1 1 1 0 Thioesterase domain Abhydrolase_3 PF07859.13 AJD69635.1 - 0.028 14.3 0.1 0.039 13.8 0.1 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Acyl_transf_1 PF00698.21 AJD69635.1 - 0.035 13.6 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 Acyl transferase domain Abhydrolase_5 PF12695.7 AJD69635.1 - 0.037 13.8 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family Lipase_3 PF01764.25 AJD69635.1 - 0.065 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) Chlorophyllase PF07224.11 AJD69635.1 - 0.087 11.8 0.0 0.19 10.7 0.0 1.5 1 1 0 1 1 1 0 Chlorophyllase DUF676 PF05057.14 AJD69635.1 - 0.22 11.0 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Homoserine_dh PF00742.19 AJD69636.1 - 5.1e-44 150.2 0.0 7.7e-44 149.7 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 AJD69636.1 - 4.2e-10 40.3 0.1 7.6e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 AJD69636.1 - 0.18 11.9 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Cys_Met_Meta_PP PF01053.20 AJD69637.1 - 1.1e-134 448.8 0.0 1.3e-134 448.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 AJD69637.1 - 3.6e-07 29.7 0.0 5.3e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 AJD69637.1 - 1.8e-06 27.2 0.0 3.1e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 AJD69637.1 - 0.0039 15.8 0.0 0.044 12.3 0.0 2.1 1 1 0 1 1 1 1 Methionine gamma-lyase GDC-P PF02347.16 AJD69637.1 - 0.091 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Abhydrolase_1 PF00561.20 AJD69638.1 - 4.2e-18 65.9 0.2 2.3e-17 63.5 0.2 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD69638.1 - 1.4e-07 32.3 11.3 1.9e-07 32.0 11.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD69638.1 - 0.004 16.4 0.3 0.019 14.3 0.3 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 AJD69638.1 - 0.02 13.6 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF429 PF04250.13 AJD69638.1 - 0.67 9.7 7.3 0.048 13.4 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF429) Peptidase_M23 PF01551.22 AJD69639.1 - 1.5e-24 86.0 0.0 2.3e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M23 DUF1180 PF06679.12 AJD69639.1 - 1.4 9.4 3.7 0.79 10.1 1.9 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) GTP_EFTU PF00009.27 AJD69640.1 - 7.4e-48 162.7 0.0 1e-47 162.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RF3_C PF16658.5 AJD69640.1 - 3.2e-46 156.4 0.0 5.1e-46 155.7 0.0 1.3 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 AJD69640.1 - 9.3e-07 29.2 0.0 1.9e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AJD69640.1 - 3.1e-05 24.0 0.0 0.00019 21.5 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase EFG_II PF14492.6 AJD69640.1 - 0.00015 21.7 0.0 0.00033 20.7 0.0 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II HlyIII PF03006.20 AJD69641.1 - 1.2e-36 126.5 15.5 1.4e-36 126.3 15.5 1.0 1 0 0 1 1 1 1 Haemolysin-III related AsmA PF05170.14 AJD69642.1 - 1.2e-51 176.3 0.0 1.3e-49 169.6 0.0 2.5 1 1 0 1 1 1 1 AsmA family AsmA_2 PF13502.6 AJD69642.1 - 6.2e-23 81.5 4.6 1.2e-16 61.0 1.5 3.1 3 0 0 3 3 3 2 AsmA-like C-terminal region CBS PF00571.28 AJD69643.1 - 1.8e-24 86.0 2.7 1.3e-14 54.4 0.2 2.1 2 0 0 2 2 2 2 CBS domain Glycos_transf_2 PF00535.26 AJD69644.1 - 9.3e-24 84.1 0.0 1.3e-23 83.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD69644.1 - 2.9e-08 33.9 0.0 4.3e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AJD69644.1 - 0.026 15.0 0.0 0.053 14.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 7TMR-DISM_7TM PF07695.11 AJD69644.1 - 0.088 12.7 3.5 0.12 12.2 3.5 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Glyco_tranf_2_2 PF10111.9 AJD69644.1 - 0.14 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Transgly PF00912.22 AJD69645.1 - 2e-45 154.4 0.0 2.6e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase HSP33 PF01430.19 AJD69646.1 - 4.4e-76 255.8 0.0 4.9e-76 255.7 0.0 1.0 1 0 0 1 1 1 1 Hsp33 protein TonB_dep_Rec PF00593.24 AJD69648.1 - 9e-41 141.2 43.8 9e-41 141.2 43.8 3.0 1 1 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69648.1 - 4.8e-27 94.6 4.4 1.4e-26 93.2 4.4 1.9 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Sulfotransfer_3 PF13469.6 AJD69649.1 - 8e-38 131.0 0.1 1.9e-37 129.8 0.1 1.7 1 1 0 1 1 1 1 Sulfotransferase family Sulfotransfer_1 PF00685.27 AJD69649.1 - 3.5e-11 43.1 0.0 1e-10 41.6 0.0 1.7 1 1 0 1 1 1 1 Sulfotransferase domain TPR_8 PF13181.6 AJD69649.1 - 8.4e-07 28.7 0.1 0.03 14.5 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 AJD69649.1 - 2.7e-06 27.1 0.2 0.17 12.1 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 AJD69649.1 - 5.9e-05 22.7 0.1 0.51 10.3 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 AJD69649.1 - 0.00017 22.0 1.5 0.57 10.7 0.0 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat Sulfotransfer_4 PF17784.1 AJD69649.1 - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 Sulfotransferase domain TPR_14 PF13428.6 AJD69649.1 - 0.0026 18.5 2.1 4.2 8.4 0.1 4.3 2 1 1 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 AJD69649.1 - 0.0046 15.9 0.0 0.0081 15.1 0.0 1.3 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 DUF717 PF05338.12 AJD69649.1 - 0.16 12.1 0.8 14 5.8 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF717) TetR_N PF00440.23 AJD69650.1 - 4.9e-15 55.0 0.0 9.7e-15 54.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 AJD69650.1 - 4.1e-06 27.0 3.8 1.3e-05 25.4 2.9 2.1 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_33 PF13305.6 AJD69650.1 - 0.0032 18.2 1.7 0.0083 16.9 1.7 2.0 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 AJD69650.1 - 0.007 16.7 0.1 0.059 13.7 0.1 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_20 PF12840.7 AJD69650.1 - 0.016 15.3 0.2 3.8 7.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_C_16 PF17920.1 AJD69650.1 - 0.075 13.3 3.1 0.21 11.8 0.5 2.7 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Hydrolase_4 PF12146.8 AJD69651.1 - 3.3e-19 69.1 0.7 3.8e-18 65.6 0.7 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD69651.1 - 1.5e-16 61.7 15.5 1.9e-16 61.4 15.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD69651.1 - 7.1e-15 55.3 0.2 2.5e-13 50.3 0.2 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 AJD69651.1 - 7.5e-05 22.5 1.3 0.00076 19.1 1.3 2.1 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PAF-AH_p_II PF03403.13 AJD69651.1 - 0.00038 19.1 0.2 0.00053 18.6 0.2 1.1 1 0 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II UPF0261 PF06792.11 AJD69651.1 - 0.0034 16.4 0.2 0.068 12.1 0.1 2.0 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0261) Abhydrolase_4 PF08386.10 AJD69651.1 - 0.057 13.5 0.8 0.14 12.3 0.1 1.9 2 0 0 2 2 2 0 TAP-like protein Esterase PF00756.20 AJD69651.1 - 0.057 13.1 0.0 0.15 11.7 0.0 1.7 2 1 0 2 2 2 0 Putative esterase Abhydrolase_2 PF02230.16 AJD69651.1 - 0.059 13.2 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase TrbE PF11100.8 AJD69651.1 - 1.2 9.4 3.4 2.6 8.3 0.2 2.8 3 0 0 3 3 3 0 Conjugal transfer protein TrbE DUF1974 PF09317.11 AJD69652.1 - 1.2e-106 356.4 0.0 1.6e-106 356.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) Acyl-CoA_dh_1 PF00441.24 AJD69652.1 - 3.8e-18 66.1 0.7 4.7e-17 62.6 0.5 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AJD69652.1 - 5.6e-18 65.6 0.0 6.7e-17 62.2 0.0 2.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AJD69652.1 - 1.8e-05 24.8 0.0 4.7e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AJD69652.1 - 0.041 14.2 0.3 0.084 13.1 0.3 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain DUF4229 PF14012.6 AJD69652.1 - 4.4 7.5 9.4 11 6.2 9.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF1304 PF06993.12 AJD69653.1 - 4.3e-39 132.9 5.8 5.2e-39 132.6 5.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1304) MFS_1 PF07690.16 AJD69654.1 - 1.5e-13 50.4 50.3 2.2e-13 49.8 39.8 2.8 2 1 1 3 3 3 2 Major Facilitator Superfamily TLC PF03219.14 AJD69654.1 - 0.0015 17.3 4.0 0.0015 17.3 4.0 3.5 3 1 0 3 3 3 1 TLC ATP/ADP transporter DUF4006 PF13179.6 AJD69654.1 - 0.063 13.2 0.7 1 9.3 0.0 3.4 3 0 0 3 3 3 0 Family of unknown function (DUF4006) DUF4514 PF14986.6 AJD69654.1 - 0.18 11.8 0.8 0.68 10.0 0.8 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4514) Sugar_tr PF00083.24 AJD69654.1 - 0.91 8.3 25.7 0.022 13.6 18.4 1.9 2 0 0 2 2 2 0 Sugar (and other) transporter Beta-lactamase PF00144.24 AJD69655.1 - 9.1e-66 222.3 5.2 1.4e-65 221.7 5.2 1.2 1 0 0 1 1 1 1 Beta-lactamase HC2 PF07382.11 AJD69656.1 - 2.3 8.2 141.8 5.8e+02 0.4 141.5 2.4 1 1 0 1 1 1 0 Histone H1-like nucleoprotein HC2 GCV_H PF01597.19 AJD69657.1 - 4.1e-44 149.4 0.1 4.6e-44 149.2 0.1 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 AJD69657.1 - 1.6e-05 24.6 0.3 2.6e-05 23.9 0.3 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 AJD69657.1 - 0.00018 21.4 0.1 0.0002 21.3 0.1 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 AJD69657.1 - 0.09 12.5 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_T PF01571.21 AJD69658.1 - 1.5e-89 299.8 0.2 1.9e-89 299.5 0.2 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 AJD69658.1 - 6.7e-15 54.8 0.1 1.2e-14 54.0 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain POPLD PF08170.12 AJD69658.1 - 9e-05 22.7 0.0 0.00017 21.8 0.0 1.4 1 0 0 1 1 1 1 POPLD (NUC188) domain NfeD PF01957.18 AJD69659.1 - 2.5e-05 24.6 0.6 4.2e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding GspL_C PF12693.7 AJD69659.1 - 0.041 13.7 1.2 0.063 13.1 0.1 1.7 1 1 1 2 2 2 0 GspL periplasmic domain DC_STAMP PF07782.13 AJD69659.1 - 0.19 11.6 0.3 0.25 11.2 0.3 1.2 1 0 0 1 1 1 0 DC-STAMP-like protein Prominin PF05478.11 AJD69659.1 - 0.51 8.2 1.3 4.9 5.0 1.7 1.9 2 0 0 2 2 2 0 Prominin Band_7_C PF16200.5 AJD69660.1 - 6e-09 35.8 1.4 7.2e-09 35.6 1.4 1.1 1 0 0 1 1 1 1 C-terminal region of band_7 UPF0060 PF02694.15 AJD69661.1 - 2.9e-41 140.0 6.7 3.4e-41 139.8 6.7 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family DUF4203 PF13886.6 AJD69661.1 - 0.66 9.6 11.9 0.8 9.3 11.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) DUF4191 PF13829.6 AJD69661.1 - 0.79 9.0 2.8 0.46 9.8 1.0 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) MazG PF03819.17 AJD69662.1 - 4.2e-37 126.2 0.1 2.1e-27 95.1 0.0 2.3 2 0 0 2 2 2 2 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 AJD69662.1 - 8.6e-10 38.9 0.1 0.00045 20.6 0.1 2.5 2 0 0 2 2 2 2 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 AJD69662.1 - 0.012 15.9 0.1 0.038 14.2 0.0 1.8 2 0 0 2 2 2 0 MazG-like family PORR PF11955.8 AJD69662.1 - 0.12 11.3 0.0 10 5.0 0.0 2.2 2 0 0 2 2 2 0 Plant organelle RNA recognition domain Inositol_P PF00459.25 AJD69663.1 - 1.9e-48 165.3 0.0 2.4e-48 165.0 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 AJD69663.1 - 0.18 11.2 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain NUDIX PF00293.28 AJD69664.1 - 8.7e-16 58.2 0.2 1.1e-15 57.8 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Aminotran_3 PF00202.21 AJD69665.1 - 4.7e-116 387.8 0.0 5.2e-116 387.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Methyltrans_RNA PF04452.14 AJD69666.1 - 5.4e-73 245.1 0.0 6.1e-73 244.9 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase Glucokinase PF02685.16 AJD69667.1 - 4.3e-101 338.1 0.5 4.9e-101 337.9 0.5 1.0 1 0 0 1 1 1 1 Glucokinase TonB_dep_Rec PF00593.24 AJD69668.1 - 1.2e-42 147.4 59.6 1.2e-42 147.4 59.6 2.9 1 1 2 3 3 3 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD69668.1 - 2.2e-19 69.7 25.2 2.2e-19 69.7 25.2 2.9 3 0 0 3 3 3 2 Outer membrane protein beta-barrel family Plug PF07715.15 AJD69668.1 - 3.3e-14 53.3 0.2 3.3e-14 53.3 0.2 2.4 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain Alpha_L_fucos PF01120.17 AJD69669.1 - 6.2e-102 341.6 0.0 7.6e-102 341.3 0.0 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase Fucosidase_C PF16757.5 AJD69669.1 - 3.9e-08 33.7 0.0 7.6e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Alpha-L-fucosidase C-terminal domain GHL6 PF14871.6 AJD69669.1 - 0.0047 17.1 0.0 0.044 13.9 0.0 2.4 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_18 PF00704.28 AJD69670.1 - 1.5e-26 93.9 5.8 2e-26 93.5 5.8 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 Glyco_hydro_20 PF00728.22 AJD69671.1 - 4.8e-119 397.9 0.0 6e-119 397.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain Glyco_hydro_20b PF02838.15 AJD69671.1 - 1.3e-20 74.4 0.0 2.8e-20 73.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 CHB_HEX_C_1 PF13290.6 AJD69671.1 - 2.7e-13 49.7 0.2 6.1e-13 48.6 0.2 1.5 1 0 0 1 1 1 1 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 AJD69671.1 - 8.8e-12 45.0 0.1 1.6e-11 44.2 0.1 1.4 1 0 0 1 1 1 1 Fn3 associated CBM_6 PF03422.15 AJD69671.1 - 0.00013 22.3 0.0 0.0023 18.2 0.0 2.4 2 0 0 2 2 2 1 Carbohydrate binding module (family 6) LPAM_2 PF13627.6 AJD69671.1 - 0.016 15.1 2.7 0.016 15.1 2.7 2.1 2 0 0 2 2 2 0 Prokaryotic lipoprotein-attachment site Ig_mannosidase PF17753.1 AJD69672.1 - 5e-20 71.0 0.1 2.2e-19 69.0 0.0 2.1 2 0 0 2 2 2 1 Ig-fold domain Mannosidase_ig PF17786.1 AJD69672.1 - 4.8e-13 49.5 0.0 7.2e-12 45.8 0.0 2.6 2 1 0 2 2 2 1 Mannosidase Ig/CBM-like domain Glyco_hydro_2 PF00703.21 AJD69672.1 - 8.7e-09 36.0 0.0 2.4e-08 34.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.18 AJD69672.1 - 1.3e-05 25.2 0.0 2.9e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 AJD69672.1 - 8.1e-05 21.9 0.1 0.0005 19.3 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Big_3_2 PF12245.8 AJD69672.1 - 0.021 15.1 0.0 0.048 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain Ig_GlcNase PF18368.1 AJD69672.1 - 0.049 13.8 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain Glyco_hydro_3_C PF01915.22 AJD69673.1 - 5.1e-61 206.2 0.0 7.3e-61 205.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 AJD69673.1 - 1.2e-43 149.7 0.0 7.2e-43 147.2 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain PA14 PF07691.12 AJD69673.1 - 2.9e-31 108.2 0.0 4.7e-31 107.6 0.0 1.3 1 0 0 1 1 1 1 PA14 domain Fn3-like PF14310.6 AJD69673.1 - 8.8e-20 70.6 0.0 1.9e-19 69.5 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain CARDB PF07705.11 AJD69673.1 - 0.21 11.8 0.0 0.57 10.5 0.0 1.7 1 0 0 1 1 1 0 CARDB DUF11 PF01345.18 AJD69673.1 - 0.24 11.7 2.0 3.7 7.9 2.0 2.5 1 1 0 1 1 1 0 Domain of unknown function DUF11 TonB_dep_Rec PF00593.24 AJD69674.1 - 1.2e-31 111.1 34.0 1.2e-31 111.1 34.0 2.7 1 1 2 3 3 3 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD69674.1 - 2.5e-19 69.6 1.0 2.5e-19 69.6 1.0 2.4 3 0 0 3 3 3 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD69674.1 - 6.8e-17 62.0 3.1 3.6e-16 59.7 3.1 2.3 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain CarboxypepD_reg PF13620.6 AJD69674.1 - 5.2e-13 49.1 0.4 2.1e-12 47.2 0.4 2.1 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 AJD69674.1 - 2.4e-12 46.7 0.0 5.2e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 CarboxypepD_reg-like domain fn3_3 PF14686.6 AJD69674.1 - 6.6e-06 25.8 0.1 0.0013 18.4 0.1 3.2 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF2012 PF09430.10 AJD69674.1 - 2.7e-05 24.3 0.0 5.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) PEGA PF08308.11 AJD69674.1 - 0.0008 19.3 0.0 0.002 18.0 0.0 1.7 1 0 0 1 1 1 1 PEGA domain Glyco_hydro_35 PF01301.19 AJD69675.1 - 2.5e-81 273.7 0.0 3.1e-81 273.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 AJD69675.1 - 4.1e-09 36.3 0.0 4.8e-08 32.7 0.0 2.0 2 0 0 2 2 2 1 Beta-galactosidase BetaGal_dom4_5 PF13364.6 AJD69675.1 - 0.015 15.9 0.0 0.81 10.3 0.0 2.3 2 0 0 2 2 2 0 Beta-galactosidase jelly roll domain Cellulase PF00150.18 AJD69675.1 - 0.19 11.1 0.0 0.4 10.1 0.0 1.5 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) AA_permease_2 PF13520.6 AJD69676.1 - 6.5e-43 147.1 26.8 8e-43 146.8 26.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD69676.1 - 3.7e-25 88.5 24.2 4.8e-25 88.1 24.2 1.1 1 0 0 1 1 1 1 Amino acid permease PfkB PF00294.24 AJD69677.1 - 2.2e-37 129.0 0.2 2.7e-37 128.7 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyco_hydro_4 PF02056.16 AJD69678.1 - 1.2e-40 139.0 0.0 1.7e-40 138.5 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 AJD69678.1 - 9.4e-39 133.6 0.0 1.3e-38 133.2 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain ANTH PF07651.16 AJD69678.1 - 0.014 14.4 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 ANTH domain Glyco_hydro_125 PF06824.11 AJD69679.1 - 1.3e-149 498.6 0.0 1.5e-149 498.4 0.0 1.0 1 0 0 1 1 1 1 Metal-independent alpha-mannosidase (GH125) Glyco_hydro_92 PF07971.12 AJD69680.1 - 4e-165 550.2 0.0 4.8e-165 549.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 Glyco_hydro_92N PF17678.1 AJD69680.1 - 1.1e-83 280.8 0.0 1.6e-83 280.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 N-terminal domain Glyco_hydro_35 PF01301.19 AJD69681.1 - 1.3e-120 402.8 0.0 1.6e-120 402.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 AJD69681.1 - 6.6e-15 55.3 0.0 1e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase Cellulase PF00150.18 AJD69681.1 - 0.011 15.2 0.0 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) DegS PF05384.11 AJD69682.1 - 0.062 12.8 0.1 1.9 8.0 0.1 2.4 2 0 0 2 2 2 0 Sensor protein DegS RebB PF11747.8 AJD69684.1 - 1.6e-27 95.4 12.8 2.4e-27 94.8 12.8 1.3 1 0 0 1 1 1 1 Killing trait BNR_2 PF13088.6 AJD69685.1 - 8.4e-89 297.6 0.2 1e-88 297.2 0.2 1.1 1 0 0 1 1 1 1 BNR repeat-like domain BNR PF02012.20 AJD69685.1 - 0.027 14.4 12.0 10 6.6 0.0 4.7 5 0 0 5 5 5 0 BNR/Asp-box repeat LRR_8 PF13855.6 AJD69686.1 - 8.8e-16 57.4 5.1 1e-07 31.6 0.4 4.0 3 1 1 4 4 4 4 Leucine rich repeat LRR_4 PF12799.7 AJD69686.1 - 1e-12 48.1 10.7 0.00041 20.7 0.8 4.5 3 1 1 4 4 4 4 Leucine Rich repeats (2 copies) LRR_1 PF00560.33 AJD69686.1 - 2.7e-05 24.1 14.1 6.7 7.7 0.2 7.8 8 0 0 8 8 8 2 Leucine Rich Repeat LRR_6 PF13516.6 AJD69686.1 - 4.5 7.6 6.5 32 4.9 0.0 4.7 7 0 0 7 7 7 0 Leucine Rich repeat CutC PF03932.14 AJD69687.1 - 1.2e-80 269.8 1.5 1.6e-80 269.4 1.5 1.1 1 0 0 1 1 1 1 CutC family Asparaginase_2 PF01112.18 AJD69688.1 - 9.7e-81 271.1 0.2 1.6e-80 270.4 0.2 1.2 1 0 0 1 1 1 1 Asparaginase TAT_signal PF10518.9 AJD69688.1 - 0.009 15.8 1.1 0.009 15.8 1.1 2.6 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_3 PF13302.7 AJD69689.1 - 4.7e-14 53.2 0.0 5.7e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AJD69689.1 - 8.1e-06 26.1 0.0 9.9e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD69689.1 - 8e-05 22.8 0.0 0.00011 22.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 AJD69689.1 - 0.037 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CheW PF01584.19 AJD69690.1 - 1.1e-14 54.2 0.0 1.3e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 AJD69691.1 - 3e-12 46.6 0.7 3.6e-11 43.1 0.2 2.7 2 1 0 2 2 2 1 CheB methylesterase Hpt PF01627.23 AJD69692.1 - 1.5e-40 137.3 32.8 9e-15 54.7 0.3 8.2 8 2 2 10 10 10 4 Hpt domain Response_reg PF00072.24 AJD69692.1 - 2.1e-26 92.3 0.1 5.4e-26 91.0 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 AJD69692.1 - 4.3e-20 71.8 0.3 8.4e-20 70.8 0.3 1.5 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 AJD69692.1 - 1.1e-15 58.1 0.4 3.8e-15 56.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 AJD69692.1 - 5.4e-07 29.9 10.0 2.6e-05 24.5 9.5 3.9 3 1 0 3 3 3 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 AJD69692.1 - 0.0037 17.2 0.0 0.12 12.4 0.1 3.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain MCPsignal PF00015.21 AJD69693.1 - 3.4e-42 144.2 26.2 3.4e-42 144.2 26.2 4.2 2 2 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PilJ PF13675.6 AJD69693.1 - 2.5e-07 30.7 32.7 6.9e-05 22.8 2.3 5.5 4 2 2 6 6 6 3 Type IV pili methyl-accepting chemotaxis transducer N-term Syntaxin_2 PF14523.6 AJD69693.1 - 0.0087 16.4 18.0 6.2 7.2 0.7 4.9 2 1 2 4 4 4 2 Syntaxin-like protein Sh_2 PF17512.2 AJD69693.1 - 0.058 13.2 2.5 0.18 11.6 2.5 1.8 1 0 0 1 1 1 0 Metapneumovirus Small hydrophobic protein DUF948 PF06103.11 AJD69693.1 - 0.092 13.0 27.2 4.6 7.6 4.1 6.3 4 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 AJD69693.1 - 0.11 12.8 17.9 0.19 12.0 0.4 5.4 5 1 0 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAMP PF00672.25 AJD69693.1 - 0.41 11.1 9.2 4.7 7.7 0.1 5.5 5 0 0 5 5 5 0 HAMP domain Laminin_II PF06009.12 AJD69693.1 - 1.6 8.8 28.0 1.9 8.5 8.0 4.0 3 1 1 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.22 AJD69693.1 - 4.5 7.6 20.4 2.1 8.6 1.0 4.9 4 1 2 6 6 6 0 Seryl-tRNA synthetase N-terminal domain LUC7 PF03194.15 AJD69693.1 - 4.5 6.9 13.6 5e+02 0.2 13.6 2.9 1 1 0 1 1 1 0 LUC7 N_terminus DUF1664 PF07889.12 AJD69693.1 - 6.2 6.9 22.6 3.8 7.6 2.0 5.0 5 1 1 6 6 6 0 Protein of unknown function (DUF1664) CheW PF01584.19 AJD69694.1 - 3.4e-25 88.3 0.0 4.2e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 AJD69695.1 - 3.5e-26 91.6 0.0 3.9e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 AJD69695.1 - 0.018 15.1 0.0 0.025 14.6 0.0 1.3 1 1 0 1 1 1 0 B12 binding domain Response_reg PF00072.24 AJD69696.1 - 2.9e-27 95.0 0.0 3.2e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GSH-S_ATP PF02955.16 AJD69697.1 - 5.2e-72 240.9 0.0 6.7e-72 240.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_N PF02951.14 AJD69697.1 - 1.5e-39 134.8 0.0 2.1e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain RimK PF08443.11 AJD69697.1 - 6.3e-08 32.4 0.0 8.7e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 AJD69697.1 - 0.0024 17.1 0.0 0.0038 16.5 0.0 1.2 1 0 0 1 1 1 1 YheC/D like ATP-grasp TonB_C PF03544.14 AJD69698.1 - 7.8e-16 58.3 0.0 1.5e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AJD69698.1 - 1.7e-09 37.8 0.0 3.6e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 TonB C terminal ADP_ribosyl_GH PF03747.14 AJD69699.1 - 2.8e-69 234.0 11.9 3.5e-69 233.7 11.9 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Peptidase_M22 PF00814.25 AJD69700.1 - 5e-30 105.1 0.5 9.1e-30 104.3 0.5 1.3 1 0 0 1 1 1 1 Glycoprotease family Helicase_C_2 PF13307.6 AJD69701.1 - 4.4e-35 121.4 0.0 6.1e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD PF00270.29 AJD69701.1 - 8.5e-07 28.9 0.0 0.00018 21.3 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 AJD69701.1 - 0.003 17.6 0.0 1.3 9.0 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD_2 PF06733.15 AJD69701.1 - 0.036 13.7 0.0 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 DEAD_2 TPR_19 PF14559.6 AJD69702.1 - 0.011 16.2 2.6 0.011 16.2 2.6 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.6 AJD69702.1 - 0.048 14.3 5.7 0.048 14.3 5.7 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat BTAD PF03704.17 AJD69702.1 - 0.066 13.6 3.3 0.14 12.6 3.3 1.6 1 1 0 1 1 1 0 Bacterial transcriptional activator domain TPR_14 PF13428.6 AJD69702.1 - 0.26 12.2 6.3 0.93 10.5 2.2 2.7 1 1 1 2 2 2 0 Tetratricopeptide repeat Transgly PF00912.22 AJD69703.1 - 1.7e-53 180.7 0.0 2.5e-53 180.2 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase UB2H PF14814.6 AJD69703.1 - 1.3e-19 69.9 0.0 2.7e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain Transpeptidase PF00905.22 AJD69703.1 - 7.1e-18 64.8 0.0 1.8e-16 60.2 0.0 2.3 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain Glycos_transf_2 PF00535.26 AJD69704.1 - 3.3e-27 95.4 0.0 7.6e-27 94.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_1_4 PF13692.6 AJD69704.1 - 4.8e-26 91.8 0.0 1.1e-25 90.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_tranf_2_3 PF13641.6 AJD69704.1 - 2.3e-20 73.5 0.1 9.4e-20 71.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_1_2 PF13524.6 AJD69704.1 - 1.7e-06 28.3 0.0 6.5e-06 26.5 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_tranf_2_2 PF10111.9 AJD69704.1 - 2.5e-06 27.2 0.0 4.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 AJD69704.1 - 5.5e-06 26.0 0.0 3.4e-05 23.4 0.0 2.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.6 AJD69704.1 - 0.0013 18.5 0.0 0.008 15.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.6 AJD69704.1 - 0.002 18.1 0.1 0.0058 16.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.20 AJD69704.1 - 0.025 14.1 0.0 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 TPR_9 PF13371.6 AJD69705.1 - 0.00082 19.5 6.6 0.00082 19.5 6.6 8.1 8 2 0 8 8 8 1 Tetratricopeptide repeat TPR_14 PF13428.6 AJD69705.1 - 0.0094 16.7 4.9 0.0094 16.7 4.9 9.6 9 2 1 10 10 10 4 Tetratricopeptide repeat TPR_1 PF00515.28 AJD69705.1 - 0.072 12.9 6.9 8.7 6.4 0.0 4.9 6 0 0 6 6 6 0 Tetratricopeptide repeat CHASE2 PF05226.11 AJD69705.1 - 2.2 7.9 7.5 0.54 9.9 3.5 2.0 2 0 0 2 2 2 0 CHASE2 domain RelA_SpoT PF04607.17 AJD69706.1 - 1.4e-37 128.5 0.0 2.7e-37 127.6 0.0 1.5 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins TGS PF02824.21 AJD69706.1 - 1.6e-20 72.9 0.0 3.5e-20 71.8 0.0 1.6 1 0 0 1 1 1 1 TGS domain ACT_4 PF13291.6 AJD69706.1 - 1.5e-18 67.1 0.0 4.1e-18 65.7 0.0 1.8 1 0 0 1 1 1 1 ACT domain HD_4 PF13328.6 AJD69706.1 - 1.1e-17 64.3 3.5 2.6e-17 63.0 3.5 1.7 1 0 0 1 1 1 1 HD domain ThiS PF02597.20 AJD69706.1 - 0.0056 17.3 0.0 0.062 14.0 0.0 2.9 2 1 0 2 2 2 1 ThiS family Nre_C PF04895.12 AJD69706.1 - 0.086 12.8 0.7 0.19 11.6 0.7 1.6 1 0 0 1 1 1 0 Archaeal Nre, C-terminal AsnC_trans_reg PF01037.21 AJD69706.1 - 0.14 12.2 0.0 0.63 10.1 0.0 2.1 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Lactamase_B_2 PF12706.7 AJD69707.1 - 2.3e-51 174.2 0.0 2.8e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TENA_THI-4 PF03070.16 AJD69708.1 - 5.7e-61 206.0 0.0 6.6e-61 205.8 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DnaB_bind PF10410.9 AJD69708.1 - 0.01 16.0 1.3 0.96 9.7 0.2 2.5 2 0 0 2 2 2 0 DnaB-helicase binding domain of primase DUF1967 PF09269.11 AJD69708.1 - 0.2 11.6 0.0 0.52 10.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) PqqD PF05402.12 AJD69709.1 - 4.9e-15 55.6 1.3 5.8e-15 55.3 1.3 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Radical_SAM PF04055.21 AJD69710.1 - 1.3e-18 68.0 0.0 2.2e-18 67.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 AJD69710.1 - 4.3e-12 46.4 0.2 7.1e-12 45.7 0.2 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 AJD69710.1 - 6.4e-06 26.5 0.0 5.3e-05 23.5 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 AJD69710.1 - 0.022 14.9 0.0 0.13 12.4 0.0 2.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4726 PF15855.5 AJD69710.1 - 0.053 13.7 0.0 0.17 12.1 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4726) AP_endonuc_2 PF01261.24 AJD69710.1 - 0.089 12.2 0.5 0.34 10.3 0.3 2.0 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel PhoPQ_related PF10142.9 AJD69712.1 - 8.3e-131 436.0 0.0 9.8e-131 435.7 0.0 1.0 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein Glucokinase PF02685.16 AJD69713.1 - 3.6e-99 331.8 0.2 4.2e-99 331.5 0.2 1.0 1 0 0 1 1 1 1 Glucokinase ROK PF00480.20 AJD69713.1 - 2.9e-05 23.7 0.0 0.00012 21.7 0.0 1.8 1 1 0 1 1 1 1 ROK family TonB_dep_Rec PF00593.24 AJD69714.1 - 3.5e-32 112.9 55.2 3.5e-32 112.9 55.2 2.9 1 1 2 3 3 3 2 TonB dependent receptor Plug PF07715.15 AJD69714.1 - 4.6e-16 59.3 0.0 1.5e-15 57.6 0.0 2.0 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69714.1 - 3.9e-11 42.6 10.1 3.9e-11 42.6 10.1 1.9 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family DUF3418 PF11898.8 AJD69715.1 - 1.1e-174 582.5 1.8 1.1e-174 582.5 1.8 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3418) HA2 PF04408.23 AJD69715.1 - 3.2e-19 69.2 0.0 1.2e-18 67.4 0.0 2.0 1 0 0 1 1 1 1 Helicase associated domain (HA2) OB_NTP_bind PF07717.16 AJD69715.1 - 2.2e-13 50.4 0.0 4.3e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Oligonucleotide/oligosaccharide-binding (OB)-fold Helicase_C PF00271.31 AJD69715.1 - 5.2e-11 42.9 0.0 1.4e-10 41.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 AJD69715.1 - 1.8e-07 31.1 0.1 3.6e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 AJD69715.1 - 2.1e-05 24.4 0.1 5.5e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD69715.1 - 0.00012 22.4 0.1 0.0013 19.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 AJD69715.1 - 0.00053 19.1 0.0 0.00093 18.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.6 AJD69715.1 - 0.0011 19.3 0.0 0.0029 17.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AJD69715.1 - 0.0044 17.5 0.0 0.0086 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 AJD69715.1 - 0.0095 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ResIII PF04851.15 AJD69715.1 - 0.026 14.5 0.1 18 5.3 0.0 3.1 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit NACHT PF05729.12 AJD69715.1 - 0.039 13.9 0.4 0.14 12.1 0.4 2.1 1 1 0 1 1 1 0 NACHT domain CbiA PF01656.23 AJD69715.1 - 0.093 12.8 2.2 6.3 6.9 0.0 2.5 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain PhoH PF02562.16 AJD69715.1 - 0.16 11.4 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 AJD69715.1 - 0.17 11.4 0.0 0.17 11.4 0.0 3.4 4 0 0 4 4 4 0 AAA domain Ferritin PF00210.24 AJD69716.1 - 2.2e-29 102.2 0.0 2.5e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain DIOX_N PF14226.6 AJD69716.1 - 0.051 14.3 0.0 0.078 13.7 0.0 1.3 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal Tape_meas_lam_C PF09718.10 AJD69716.1 - 0.1 12.7 0.2 0.24 11.6 0.1 1.6 2 0 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) RQC PF09382.10 AJD69717.1 - 3.1e-43 146.2 0.0 2.2e-42 143.4 0.0 2.1 2 0 0 2 2 2 1 RQC domain HRDC PF00570.23 AJD69717.1 - 3.3e-22 78.2 0.0 8.9e-22 76.9 0.0 1.8 1 0 0 1 1 1 1 HRDC domain RecQ_Zn_bind PF16124.5 AJD69717.1 - 2.8e-20 72.8 0.4 7e-20 71.5 0.4 1.7 1 0 0 1 1 1 1 RecQ zinc-binding DEAD PF00270.29 AJD69717.1 - 7.5e-18 64.9 0.0 1.3e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD69717.1 - 5.4e-16 58.9 0.0 4.8e-14 52.6 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Adhesin_P1 PF03257.13 AJD69718.1 - 0.64 10.6 4.0 0.54 10.8 2.5 1.6 1 1 1 2 2 2 0 Mycoplasma adhesin P1 Response_reg PF00072.24 AJD69719.1 - 8.4e-12 45.3 0.0 9.8e-12 45.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF4815 PF16075.5 AJD69720.1 - 0.025 12.9 0.1 0.026 12.9 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4815) DUF5385 PF17359.2 AJD69721.1 - 0.01 15.4 0.3 0.01 15.4 0.3 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5385) Ost5 PF05251.12 AJD69721.1 - 0.02 15.1 0.0 0.02 15.1 0.0 1.0 1 0 0 1 1 1 0 Oligosaccharyltransferase subunit 5 YajC PF02699.15 AJD69721.1 - 0.028 14.3 0.4 0.032 14.1 0.4 1.1 1 0 0 1 1 1 0 Preprotein translocase subunit BatA PF07584.11 AJD69721.1 - 0.068 13.6 0.0 0.068 13.6 0.0 1.0 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal Syndecan PF01034.20 AJD69721.1 - 0.079 12.9 0.6 0.094 12.7 0.6 1.1 1 0 0 1 1 1 0 Syndecan domain MGC-24 PF05283.11 AJD69721.1 - 0.12 12.9 0.3 0.12 12.9 0.3 1.0 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Gram_pos_anchor PF00746.21 AJD69721.1 - 0.13 12.3 1.3 0.17 11.8 1.3 1.2 1 0 0 1 1 1 0 LPXTG cell wall anchor motif FeoB_associated PF12669.7 AJD69721.1 - 0.72 10.3 3.5 0.8 10.2 3.5 1.1 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein S4 PF01479.25 AJD69722.1 - 6.1e-07 29.1 0.0 1.2e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 S4 domain MCPsignal PF00015.21 AJD69724.1 - 3.2e-53 180.1 18.3 3.2e-53 180.1 18.3 3.9 4 1 1 5 5 5 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 AJD69724.1 - 2.8e-14 53.2 13.3 4.2e-10 39.8 1.9 5.7 5 0 0 5 5 5 3 HAMP domain HAMP_N3 PF18575.1 AJD69724.1 - 3e-13 49.1 2.2 2.4e-10 39.8 0.0 4.8 5 0 0 5 5 5 1 HAMP N-terminal domain 3 4HB_MCP_1 PF12729.7 AJD69724.1 - 2.3e-12 46.8 4.5 2.3e-12 46.8 4.5 4.6 6 0 0 6 6 6 1 Four helix bundle sensory module for signal transduction IFT57 PF10498.9 AJD69724.1 - 0.00011 21.3 5.2 0.037 13.0 0.2 2.6 2 0 0 2 2 2 2 Intra-flagellar transport protein 57 Laminin_II PF06009.12 AJD69724.1 - 0.014 15.4 23.7 0.1 12.6 2.9 4.5 4 1 0 4 4 4 0 Laminin Domain II L27 PF02828.16 AJD69724.1 - 0.4 10.5 2.0 22 4.9 0.8 3.0 2 0 0 2 2 2 0 L27 domain BLOC1_2 PF10046.9 AJD69724.1 - 0.41 11.0 14.9 2.2 8.6 1.8 5.0 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PIN PF01850.21 AJD69724.1 - 1.5 9.4 7.1 0.64 10.5 1.4 3.2 3 1 0 3 3 3 0 PIN domain DUF4200 PF13863.6 AJD69724.1 - 2.8 8.4 9.5 1.4 9.3 0.5 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) DUF1664 PF07889.12 AJD69724.1 - 3.6 7.6 20.2 2 8.4 3.7 4.5 4 2 0 4 4 4 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 AJD69724.1 - 7.7 5.7 8.2 10 5.2 0.9 3.0 3 0 0 3 3 3 0 TMPIT-like protein LysE PF01810.18 AJD69725.1 - 8.4e-43 146.1 10.5 9.6e-43 145.9 10.5 1.0 1 0 0 1 1 1 1 LysE type translocator HTH_1 PF00126.27 AJD69726.1 - 1.5e-17 63.3 0.1 1.5e-17 63.3 0.1 2.7 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AJD69726.1 - 4.2e-15 55.7 6.2 8.9e-15 54.6 6.2 1.4 1 0 0 1 1 1 1 LysR substrate binding domain HTH_24 PF13412.6 AJD69726.1 - 0.02 14.5 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AJD69726.1 - 0.023 14.5 0.1 0.075 12.9 0.1 1.9 1 0 0 1 1 1 0 MarR family HTH_30 PF13556.6 AJD69726.1 - 0.033 14.0 0.0 0.12 12.1 0.0 2.0 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 AJD69726.1 - 0.074 13.2 0.0 0.22 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Response_reg PF00072.24 AJD69727.1 - 6e-13 49.0 0.0 9.2e-13 48.4 0.0 1.3 1 1 0 1 1 1 1 Response regulator receiver domain Phosphonate-bd PF12974.7 AJD69727.1 - 0.012 15.3 0.1 0.015 14.9 0.1 1.1 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein HWE_HK PF07536.14 AJD69728.1 - 2.2e-25 89.2 0.9 2.2e-25 89.2 0.9 1.9 3 0 0 3 3 3 1 HWE histidine kinase PAS_4 PF08448.10 AJD69728.1 - 7.6e-16 58.3 0.0 1.5e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 AJD69728.1 - 7.6e-08 32.3 0.0 1.3e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 AJD69728.1 - 3.7e-07 30.3 0.0 5.9e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 PAS domain HisKA_2 PF07568.12 AJD69728.1 - 1.4e-06 28.3 0.1 3.5e-06 27.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase HATPase_c_2 PF13581.6 AJD69728.1 - 6e-05 23.0 0.0 0.00013 21.9 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 AJD69728.1 - 8.7e-05 22.4 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain MEKHLA PF08670.11 AJD69728.1 - 0.00089 19.2 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 MEKHLA domain PAS_3 PF08447.12 AJD69728.1 - 0.0009 19.5 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold MCM_bind PF09739.9 AJD69728.1 - 0.062 11.7 0.2 0.083 11.3 0.2 1.1 1 0 0 1 1 1 0 Mini-chromosome maintenance replisome factor QueC PF06508.13 AJD69729.1 - 9.4e-76 254.0 0.0 1.1e-75 253.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 AJD69729.1 - 5.1e-08 33.0 0.2 7.2e-08 32.5 0.2 1.1 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 AJD69729.1 - 0.0016 17.3 0.4 0.002 17.0 0.4 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Arginosuc_synth PF00764.19 AJD69729.1 - 0.0041 16.5 0.2 0.0062 15.9 0.2 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.17 AJD69729.1 - 0.01 15.0 0.3 0.014 14.6 0.3 1.2 1 0 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.20 AJD69729.1 - 0.022 14.5 0.1 0.033 13.9 0.1 1.2 1 0 0 1 1 1 0 PP-loop family ThiI PF02568.14 AJD69729.1 - 0.076 12.6 0.1 0.19 11.3 0.1 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 AJD69729.1 - 0.19 11.8 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Radical_SAM PF04055.21 AJD69730.1 - 3.1e-14 53.7 0.2 4e-14 53.4 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AJD69730.1 - 1.4e-10 41.4 0.0 2.1e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 AJD69730.1 - 2.9e-06 27.6 0.0 4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain NAD_binding_7 PF13241.6 AJD69730.1 - 0.12 12.8 0.1 0.21 12.0 0.1 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding TolA_bind_tri PF16331.5 AJD69731.1 - 4.4e-18 65.1 14.1 4.4e-18 65.1 14.1 1.9 2 0 0 2 2 2 1 TolA binding protein trimerisation TPR_6 PF13174.6 AJD69731.1 - 8.5e-16 57.5 8.2 2.5e-05 24.6 0.2 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat YfiO PF13525.6 AJD69731.1 - 2.6e-13 50.2 1.5 2.6e-13 50.2 1.5 2.1 2 1 0 2 2 2 1 Outer membrane lipoprotein TPR_2 PF07719.17 AJD69731.1 - 9.8e-12 44.0 4.7 0.00023 21.0 0.1 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 AJD69731.1 - 8.8e-09 35.9 0.3 8.8e-09 35.9 0.3 3.5 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 AJD69731.1 - 3.3e-08 33.7 4.7 8e-05 22.9 0.2 3.0 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 AJD69731.1 - 5e-06 26.9 8.2 0.00051 20.5 0.1 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD69731.1 - 6.6e-06 26.5 10.2 0.00091 19.9 0.2 4.4 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_18 PF13512.6 AJD69731.1 - 1.5e-05 25.2 0.5 1.5e-05 25.2 0.5 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 AJD69731.1 - 5.8e-05 22.7 2.3 0.41 10.5 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD69731.1 - 8.1e-05 22.8 2.5 0.017 15.4 0.5 3.4 1 1 2 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 AJD69731.1 - 0.00012 22.1 1.1 0.69 10.3 0.0 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat Wzy_C_2 PF11846.8 AJD69731.1 - 0.00061 19.8 8.9 0.034 14.1 0.2 3.2 2 1 0 3 3 3 2 Virulence factor membrane-bound polymerase, C-terminal Cluap1 PF10234.9 AJD69731.1 - 0.0046 16.4 1.4 0.0076 15.7 1.4 1.3 1 0 0 1 1 1 1 Clusterin-associated protein-1 TPR_21 PF09976.9 AJD69731.1 - 0.0099 15.6 0.8 0.0099 15.6 0.8 2.9 2 1 1 3 3 3 1 Tetratricopeptide repeat-like domain T3SSipB PF16535.5 AJD69731.1 - 0.012 16.1 8.0 0.027 14.9 2.8 2.2 2 0 0 2 2 2 0 Type III cell invasion protein SipB DUF3450 PF11932.8 AJD69731.1 - 0.021 14.1 8.7 0.039 13.3 8.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DEC-1_N PF04625.13 AJD69731.1 - 0.026 13.5 5.1 0.039 13.0 5.1 1.3 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Jnk-SapK_ap_N PF09744.9 AJD69731.1 - 0.029 14.6 4.4 0.029 14.6 4.4 1.6 2 0 0 2 2 1 0 JNK_SAPK-associated protein-1 Syntaxin-6_N PF09177.11 AJD69731.1 - 0.05 14.2 0.9 0.05 14.2 0.9 1.6 2 0 0 2 2 1 0 Syntaxin 6, N-terminal Spc7 PF08317.11 AJD69731.1 - 0.066 12.1 5.0 0.11 11.4 5.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Terminase_6 PF03237.15 AJD69731.1 - 0.21 11.2 0.5 0.52 9.9 0.1 1.7 2 1 0 2 2 2 0 Terminase-like family DUF4810 PF16068.5 AJD69731.1 - 0.54 10.8 5.4 3.4 8.3 0.1 3.8 3 2 0 3 3 3 0 Domain of unknown function (DUF4810) ADIP PF11559.8 AJD69731.1 - 1.3 9.1 12.5 0.21 11.7 8.9 1.5 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding TSC22 PF01166.18 AJD69731.1 - 1.9 8.9 6.3 1.8 8.9 0.9 2.5 1 1 1 2 2 2 0 TSC-22/dip/bun family Macoilin PF09726.9 AJD69731.1 - 2.2 6.7 5.7 3.3 6.2 5.7 1.1 1 0 0 1 1 1 0 Macoilin family HemX PF04375.14 AJD69731.1 - 3.7 6.7 16.6 0.082 12.2 8.6 1.9 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase CASP_C PF08172.12 AJD69731.1 - 5.3 6.3 9.8 0.52 9.6 5.5 1.5 2 0 0 2 2 2 0 CASP C terminal TPR_10 PF13374.6 AJD69731.1 - 7 6.7 7.2 2.2 8.3 0.4 3.2 4 0 0 4 4 3 0 Tetratricopeptide repeat OmpA PF00691.20 AJD69732.1 - 1.4e-16 60.6 0.0 1.9e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 OmpA family LPAM_1 PF08139.12 AJD69732.1 - 0.2 12.2 0.8 0.34 11.5 0.8 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site PD40 PF07676.12 AJD69733.1 - 5.1e-35 118.7 12.2 1.3e-14 53.6 0.5 5.8 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat TolB_N PF04052.13 AJD69733.1 - 1.4e-30 105.6 0.0 2.5e-30 104.7 0.0 1.4 1 0 0 1 1 1 1 TolB amino-terminal domain DPPIV_N PF00930.21 AJD69733.1 - 8.6e-08 31.3 0.0 0.0022 16.8 0.0 2.4 1 1 1 2 2 2 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 AJD69733.1 - 9.5e-07 27.8 0.0 0.25 10.0 0.0 4.0 2 1 2 4 4 4 3 Oligogalacturonate lyase Peptidase_S9_N PF02897.15 AJD69733.1 - 0.0046 15.8 0.0 0.014 14.2 0.0 1.7 1 1 1 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain SGL PF08450.12 AJD69733.1 - 0.0048 16.5 0.0 0.095 12.3 0.0 2.2 1 1 0 2 2 2 1 SMP-30/Gluconolactonase/LRE-like region Lactonase PF10282.9 AJD69733.1 - 0.062 12.6 0.1 0.99 8.6 0.0 2.2 1 1 1 2 2 2 0 Lactonase, 7-bladed beta-propeller TonB_2 PF13103.6 AJD69734.1 - 1.2e-05 25.5 0.0 3.9e-05 23.8 0.0 2.0 1 0 0 1 1 1 1 TonB C terminal TolA PF06519.11 AJD69734.1 - 0.0012 19.0 0.0 0.0033 17.6 0.0 1.7 1 0 0 1 1 1 1 TolA C-terminal Hamartin PF04388.12 AJD69734.1 - 0.014 14.1 11.1 0.016 13.9 11.1 1.0 1 0 0 1 1 1 0 Hamartin protein DUF4778 PF16008.5 AJD69734.1 - 0.051 13.6 8.5 0.063 13.3 8.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4778) FAM220 PF15487.6 AJD69734.1 - 0.36 10.4 8.2 0.53 9.9 8.2 1.2 1 0 0 1 1 1 0 FAM220 family Asp-B-Hydro_N PF05279.11 AJD69734.1 - 1.1 9.3 20.9 1.5 8.8 20.9 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region LAP1C PF05609.12 AJD69734.1 - 8.2 5.4 18.2 12 4.9 18.2 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) ExbD PF02472.16 AJD69735.1 - 1.3e-27 96.5 2.9 1.5e-27 96.3 2.9 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF2149 PF09919.9 AJD69735.1 - 0.01 16.0 0.4 0.023 14.9 0.2 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2149) CbiG_N PF11760.8 AJD69735.1 - 0.34 11.0 3.2 1.5 8.9 3.3 1.9 1 1 0 1 1 1 0 Cobalamin synthesis G N-terminal MotA_ExbB PF01618.16 AJD69736.1 - 6e-38 129.5 0.1 1.1e-37 128.6 0.1 1.4 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF3169 PF11368.8 AJD69736.1 - 0.0092 15.5 1.6 0.56 9.7 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3169) Yip1 PF04893.17 AJD69736.1 - 0.016 14.9 1.6 0.15 11.7 0.1 2.1 2 0 0 2 2 2 0 Yip1 domain TMEM154 PF15102.6 AJD69736.1 - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 TMEM154 protein family Phage_holin_2_4 PF16082.5 AJD69736.1 - 0.23 11.2 5.1 9.3 6.1 2.5 3.5 2 1 0 2 2 2 0 Bacteriophage holin family, superfamily II-like DUF2207 PF09972.9 AJD69736.1 - 0.43 9.3 1.9 7.6 5.2 0.4 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) LapA_dom PF06305.11 AJD69736.1 - 4 7.3 6.5 0.7 9.8 0.1 2.9 3 1 0 3 3 3 0 Lipopolysaccharide assembly protein A domain 4HBT PF03061.22 AJD69737.1 - 1.7e-18 66.7 0.4 3e-18 66.0 0.3 1.4 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 AJD69737.1 - 3.9e-10 40.3 0.0 4.6e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 AJD69737.1 - 0.12 11.7 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase RuvB_N PF05496.12 AJD69738.1 - 2.2e-82 274.5 0.1 2.9e-82 274.1 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 AJD69738.1 - 1.3e-32 111.4 1.4 2.6e-32 110.4 1.4 1.5 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 AJD69738.1 - 2.2e-26 91.5 0.0 3.6e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 AJD69738.1 - 3.5e-18 66.3 0.0 6.7e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AJD69738.1 - 5.1e-08 33.0 0.1 1.7e-05 24.9 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 AJD69738.1 - 8.9e-05 22.0 0.1 0.13 11.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 AJD69738.1 - 0.00011 22.1 0.0 0.08 12.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 AJD69738.1 - 0.00025 20.8 0.0 0.67 9.6 0.0 2.2 1 1 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.13 AJD69738.1 - 0.0003 20.1 0.2 0.002 17.4 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_22 PF13401.6 AJD69738.1 - 0.0004 20.7 0.3 0.23 11.8 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 AJD69738.1 - 0.00072 20.0 0.2 0.061 13.7 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain TsaE PF02367.17 AJD69738.1 - 0.0017 18.3 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 AJD69738.1 - 0.0035 17.3 0.2 0.032 14.2 0.1 2.2 1 1 1 2 2 2 1 NTPase Bac_DnaA PF00308.18 AJD69738.1 - 0.0045 16.8 0.0 0.052 13.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial dnaA protein Rad17 PF03215.15 AJD69738.1 - 0.0062 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 AJD69738.1 - 0.0063 16.7 0.0 0.031 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 AJD69738.1 - 0.0069 15.8 0.0 0.37 10.2 0.0 2.3 1 1 1 2 2 2 1 Bacterial TniB protein AAA_18 PF13238.6 AJD69738.1 - 0.0082 16.7 0.0 0.018 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 AJD69738.1 - 0.0083 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 AJD69738.1 - 0.013 14.7 0.0 0.24 10.6 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain DUF815 PF05673.13 AJD69738.1 - 0.016 14.4 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_19 PF13245.6 AJD69738.1 - 0.018 15.4 0.8 0.76 10.1 0.1 2.3 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 AJD69738.1 - 0.031 14.7 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 AJD69738.1 - 0.052 13.7 0.0 0.13 12.4 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain MCM PF00493.23 AJD69738.1 - 0.053 12.6 0.1 3.5 6.7 0.1 2.5 2 1 0 2 2 1 0 MCM P-loop domain IstB_IS21 PF01695.17 AJD69738.1 - 0.077 12.7 0.1 0.36 10.5 0.1 2.0 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 AJD69738.1 - 0.092 12.5 0.0 0.28 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 AJD69738.1 - 0.11 12.9 0.0 0.46 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 AJD69738.1 - 0.15 12.1 0.0 14 5.7 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 AJD69738.1 - 0.15 12.5 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 AJD69738.1 - 0.19 11.6 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 AJD69738.1 - 0.19 10.8 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 K_trans PF02705.16 AJD69740.1 - 9.5e-213 707.5 14.3 1.1e-212 707.3 14.3 1.0 1 0 0 1 1 1 1 K+ potassium transporter RuvA_N PF01330.21 AJD69741.1 - 5.9e-20 71.1 0.0 2.5e-19 69.1 0.0 2.1 3 0 0 3 3 3 1 RuvA N terminal domain HHH_5 PF14520.6 AJD69741.1 - 4.2e-18 65.7 0.1 1.4e-17 64.0 0.4 1.8 2 0 0 2 2 1 1 Helix-hairpin-helix domain RuvA_C PF07499.13 AJD69741.1 - 1.8e-08 34.7 3.5 3.6e-08 33.7 3.5 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 AJD69741.1 - 1.4e-05 24.7 1.5 0.021 14.7 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_8 PF14716.6 AJD69741.1 - 5.1e-05 23.6 0.0 0.037 14.4 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain IMS_HHH PF11798.8 AJD69741.1 - 0.00016 21.8 0.1 0.024 14.9 0.0 2.9 3 0 0 3 3 3 1 IMS family HHH motif Transposase_20 PF02371.16 AJD69741.1 - 0.00059 20.1 0.4 0.01 16.1 0.0 2.2 1 1 1 2 2 2 1 Transposase IS116/IS110/IS902 family Ribosomal_S13 PF00416.22 AJD69741.1 - 0.0063 16.9 0.2 2.2 8.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 Cdd1 PF11731.8 AJD69741.1 - 0.008 16.4 0.0 0.35 11.2 0.0 3.0 3 0 0 3 3 3 1 Pathogenicity locus HHH_3 PF12836.7 AJD69741.1 - 0.0088 16.3 0.0 0.19 12.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 AJD69741.1 - 0.012 15.7 0.2 8.9 6.5 0.0 2.9 2 1 1 3 3 3 0 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 AJD69741.1 - 0.042 13.7 0.1 4.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda 5_3_exonuc PF01367.20 AJD69741.1 - 0.15 12.7 0.5 8.3 7.1 0.0 2.3 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold RuvC PF02075.17 AJD69742.1 - 3.1e-46 156.9 0.1 3.6e-46 156.7 0.1 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC Transcrip_reg PF01709.20 AJD69743.1 - 2.6e-87 292.2 0.0 2.9e-87 292.1 0.0 1.0 1 0 0 1 1 1 1 Transcriptional regulator HU-CCDC81_euk_2 PF18289.1 AJD69743.1 - 0.087 13.0 0.0 2.7 8.2 0.0 2.3 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 Hydrolase_4 PF12146.8 AJD69744.1 - 7.4e-05 22.1 0.2 0.022 14.0 0.1 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AJD69744.1 - 0.00013 22.6 9.1 0.00019 22.1 9.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_8 PF06259.12 AJD69744.1 - 0.00021 21.0 0.0 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase LCAT PF02450.15 AJD69744.1 - 0.16 11.1 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Palm_thioest PF02089.15 AJD69744.1 - 0.17 11.7 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Acetyltransf_1 PF00583.25 AJD69745.1 - 7.6e-14 52.0 0.0 9.5e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AJD69745.1 - 1.1e-13 51.2 0.0 1.7e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD69745.1 - 2.8e-09 37.3 0.0 4.2e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AJD69745.1 - 1.8e-06 28.2 0.0 2.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AJD69745.1 - 4.4e-06 27.4 0.0 5.4e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD69745.1 - 4.3e-05 23.4 0.0 7.8e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein tRNA-synt_2 PF00152.20 AJD69746.1 - 6.2e-106 354.0 0.0 7.5e-106 353.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GAD PF02938.14 AJD69746.1 - 1.3e-26 92.6 0.1 2.6e-26 91.7 0.1 1.5 1 0 0 1 1 1 1 GAD domain tRNA_anti-codon PF01336.25 AJD69746.1 - 4.9e-13 48.9 0.2 9.4e-13 48.0 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2b PF00587.25 AJD69746.1 - 0.0023 17.9 0.1 0.0039 17.2 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 AJD69746.1 - 0.035 13.6 1.0 1.8 8.0 0.5 2.3 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) DUF3011 PF11218.8 AJD69747.1 - 8.8e-77 257.6 21.5 1e-76 257.3 21.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3011) Zn-ribbon_8 PF09723.10 AJD69748.1 - 1.7e-15 56.8 1.4 2.4e-15 56.3 1.4 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DUF1178 PF06676.11 AJD69748.1 - 0.0022 18.4 1.3 0.0039 17.6 1.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1178) DZR PF12773.7 AJD69748.1 - 0.016 15.2 1.3 0.024 14.7 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 AJD69748.1 - 0.043 13.8 0.3 0.06 13.4 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 AJD69748.1 - 0.095 12.7 2.8 0.18 11.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 AJD69748.1 - 0.12 12.8 1.4 15 6.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Ogr_Delta PF04606.12 AJD69748.1 - 0.36 10.9 3.1 4.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Rubredoxin PF00301.20 AJD69748.1 - 0.54 10.3 4.1 9.3 6.4 0.1 2.4 1 1 1 2 2 2 0 Rubredoxin zinc_ribbon_4 PF13717.6 AJD69748.1 - 2 8.4 6.0 2.5 8.1 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain MFS_1 PF07690.16 AJD69749.1 - 3.5e-21 75.5 52.6 1.1e-12 47.6 22.1 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 AJD69749.1 - 4.9e-06 25.2 34.5 0.0011 17.4 7.9 2.6 1 1 1 3 3 3 2 Transmembrane secretion effector MFS_4 PF06779.14 AJD69749.1 - 0.015 14.6 32.3 0.02 14.2 32.3 1.1 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB DUF624 PF04854.14 AJD69749.1 - 0.1 12.7 3.5 2.9 8.1 0.1 3.4 2 0 0 2 2 2 0 Protein of unknown function, DUF624 TonB_dep_Rec PF00593.24 AJD69750.1 - 3.7e-35 122.7 29.4 3.7e-35 122.7 29.4 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69750.1 - 2.8e-13 50.4 2.7 2.8e-13 50.4 2.7 2.4 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain Phosphoesterase PF04185.14 AJD69752.1 - 1.8e-93 313.6 0.0 2.5e-93 313.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoesterase family DUF756 PF05506.12 AJD69752.1 - 7.6e-26 90.8 0.8 1.8e-15 57.6 0.4 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF756) Beta-lactamase2 PF13354.6 AJD69754.1 - 2.8e-46 157.7 0.0 3.8e-46 157.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.24 AJD69754.1 - 6.5e-26 91.3 0.8 1.4e-25 90.2 0.8 1.5 1 1 0 1 1 1 1 Beta-lactamase Peptidase_S11 PF00768.20 AJD69754.1 - 4.1e-05 23.1 0.0 7.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase TAT_signal PF10518.9 AJD69754.1 - 0.032 14.1 0.4 0.032 14.1 0.4 2.7 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence LysR_substrate PF03466.20 AJD69755.1 - 1.3e-38 132.4 8.0 2.1e-38 131.8 8.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD69755.1 - 1.9e-21 75.8 2.8 4.3e-21 74.6 2.8 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD69755.1 - 0.027 14.3 0.5 0.076 12.8 0.5 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain UreE_N PF02814.15 AJD69755.1 - 0.029 14.0 0.1 0.082 12.5 0.1 1.8 1 0 0 1 1 1 0 UreE urease accessory protein, N-terminal domain HTH_5 PF01022.20 AJD69755.1 - 0.19 11.6 0.1 0.35 10.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Mga PF05043.13 AJD69755.1 - 0.26 11.9 0.0 0.5 11.0 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain YcxB PF14317.6 AJD69756.1 - 3.7e-07 29.8 0.0 5.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 YcxB-like protein DUF3394 PF11874.8 AJD69756.1 - 0.06 13.0 0.3 2.1 8.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3394) DcuC PF03606.15 AJD69756.1 - 0.061 11.8 0.1 0.085 11.3 0.1 1.1 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier ABC_tran PF00005.27 AJD69757.1 - 2.3e-46 157.7 0.0 1.4e-21 77.5 0.0 3.1 3 1 0 3 3 3 2 ABC transporter ABC_tran_Xtn PF12848.7 AJD69757.1 - 8.7e-24 83.4 3.0 8.3e-23 80.2 4.3 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 AJD69757.1 - 1.4e-16 61.2 9.2 7.5e-07 29.3 0.0 4.9 4 1 1 5 5 5 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD69757.1 - 1.1e-09 38.1 0.2 0.052 13.0 0.0 4.3 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain ABC_tran_CTD PF16326.5 AJD69757.1 - 1.6e-09 37.9 2.0 1.6e-09 37.9 2.0 2.9 3 0 0 3 3 3 1 ABC transporter C-terminal domain MMR_HSR1 PF01926.23 AJD69757.1 - 1.1e-06 28.7 0.0 0.073 13.1 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 AJD69757.1 - 1.6e-05 24.5 0.5 0.098 12.4 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD69757.1 - 7.2e-05 23.2 2.4 0.48 10.8 0.1 3.1 3 1 0 3 3 3 2 AAA ATPase domain RsgA_GTPase PF03193.16 AJD69757.1 - 7.3e-05 22.7 0.2 0.087 12.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 AJD69757.1 - 0.00022 21.8 2.0 0.59 10.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_30 PF13604.6 AJD69757.1 - 0.00052 19.8 5.7 2 8.1 0.1 4.0 3 1 0 3 3 3 1 AAA domain MeaB PF03308.16 AJD69757.1 - 0.00057 19.0 0.7 0.15 11.0 0.1 2.4 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 AJD69757.1 - 0.0025 18.0 0.6 0.11 12.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 AJD69757.1 - 0.0026 17.7 0.1 0.8 9.6 0.0 2.9 3 0 0 3 3 3 1 NACHT domain AAA_24 PF13479.6 AJD69757.1 - 0.0028 17.4 0.1 0.61 9.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 AJD69757.1 - 0.0041 17.5 1.6 1.1 9.7 0.1 2.8 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 AJD69757.1 - 0.0059 15.8 0.2 1.6 7.8 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 AJD69757.1 - 0.006 16.9 1.0 2.1 8.6 0.0 3.2 4 0 0 4 4 2 1 AAA domain AAA_7 PF12775.7 AJD69757.1 - 0.0094 15.5 0.2 1.8 8.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region RNA_helicase PF00910.22 AJD69757.1 - 0.022 15.1 0.1 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.6 AJD69757.1 - 0.035 14.6 0.0 0.59 10.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 AJD69757.1 - 0.09 12.7 0.5 5.3 6.9 0.1 2.6 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.22 AJD69757.1 - 0.095 11.9 0.2 12 5.0 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_PrkA PF08298.11 AJD69757.1 - 0.097 11.6 0.8 7.9 5.3 0.1 2.9 3 0 0 3 3 3 0 PrkA AAA domain Roc PF08477.13 AJD69757.1 - 0.16 12.2 2.4 6.4 7.0 0.0 3.1 4 0 0 4 4 2 0 Ras of Complex, Roc, domain of DAPkinase DUF87 PF01935.17 AJD69757.1 - 0.16 12.0 3.9 1 9.4 0.0 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain Rad17 PF03215.15 AJD69757.1 - 0.19 11.6 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 AJD69757.1 - 0.69 9.6 2.2 24 4.5 0.0 3.0 3 0 0 3 3 3 0 AAA ATPase domain AAA_27 PF13514.6 AJD69757.1 - 1.7 8.2 6.3 12 5.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain DUF4826 PF16108.5 AJD69757.1 - 2.7 8.2 7.0 1.4e+02 2.7 2.7 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4826) TonB_dep_Rec PF00593.24 AJD69758.1 - 7e-51 174.5 45.3 7e-51 174.5 45.3 1.4 2 0 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69758.1 - 5e-21 75.3 0.6 5e-21 75.3 0.6 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain TrbC PF04956.13 AJD69758.1 - 0.1 12.8 2.5 0.24 11.6 2.5 1.6 1 0 0 1 1 1 0 TrbC/VIRB2 family Alpha_GJ PF03229.13 AJD69758.1 - 5.8 7.5 12.5 27 5.4 12.5 2.1 1 0 0 1 1 1 0 Alphavirus glycoprotein J Glyoxalase PF00903.25 AJD69759.1 - 6.3e-12 45.8 0.8 5.6e-10 39.5 0.8 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TonB_dep_Rec PF00593.24 AJD69760.1 - 5.6e-45 155.1 48.6 5.6e-45 155.1 48.6 1.9 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69760.1 - 7.2e-23 81.2 2.1 1e-22 80.7 0.6 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain DUF3078 PF11276.8 AJD69760.1 - 0.17 12.4 2.1 0.37 11.3 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3078) TonB_dep_Rec PF00593.24 AJD69761.1 - 5e-34 119.0 56.5 5e-34 119.0 56.5 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69761.1 - 1.2e-23 83.7 0.3 4.5e-23 81.9 0.3 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain p450 PF00067.22 AJD69762.1 - 1.1e-27 97.0 0.0 1e-23 83.9 0.0 3.1 1 1 0 1 1 1 1 Cytochrome P450 Na_H_Exchanger PF00999.21 AJD69763.1 - 3.4e-81 273.0 47.3 4e-81 272.7 47.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 AJD69763.1 - 5.1e-22 78.3 1.5 3.2e-21 75.7 0.2 2.2 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.18 AJD69763.1 - 0.0014 18.5 0.1 0.0022 17.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 AJD69763.1 - 0.0029 16.9 0.2 0.0041 16.4 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.19 AJD69763.1 - 0.008 15.6 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 AJD69763.1 - 0.0094 16.1 0.0 0.02 15.1 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 AJD69763.1 - 0.017 14.7 0.1 0.081 12.5 0.1 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 AJD69763.1 - 0.025 14.2 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 AJD69763.1 - 0.085 13.4 0.2 0.26 11.9 0.2 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 AJD69763.1 - 0.14 12.4 0.1 0.25 11.6 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF5134 PF17197.4 AJD69763.1 - 3.4 7.6 23.4 0.12 12.3 14.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5134) ATP-synt_D PF01813.17 AJD69764.1 - 0.003 17.4 3.1 0.0056 16.5 0.5 2.1 2 0 0 2 2 2 1 ATP synthase subunit D DUF1351 PF07083.11 AJD69764.1 - 0.0075 16.1 0.0 0.028 14.2 0.0 1.7 1 1 0 2 2 2 1 Protein of unknown function (DUF1351) DUF4795 PF16043.5 AJD69764.1 - 0.025 14.2 0.3 0.034 13.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) BAR PF03114.18 AJD69764.1 - 0.054 13.1 0.1 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 BAR domain Yuri_gagarin PF15934.5 AJD69764.1 - 0.059 13.2 0.7 0.12 12.2 0.7 1.5 1 0 0 1 1 1 0 Yuri gagarin T7SS_ESX_EspC PF10824.8 AJD69764.1 - 0.13 12.8 1.0 0.52 10.8 0.3 2.2 2 1 0 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm WXG100 PF06013.12 AJD69764.1 - 0.7 10.2 5.4 11 6.4 1.0 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF2974 PF11187.8 AJD69765.1 - 0.0021 17.6 0.0 0.0055 16.3 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 AJD69765.1 - 0.0025 17.7 0.1 0.0047 16.8 0.1 1.4 1 0 0 1 1 1 1 Lipase (class 3) Thioesterase PF00975.20 AJD69765.1 - 0.007 16.5 3.9 0.18 11.9 0.0 2.5 2 0 0 2 2 2 2 Thioesterase domain Abhydrolase_3 PF07859.13 AJD69765.1 - 0.019 14.8 0.1 0.019 14.8 0.1 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold PGAP1 PF07819.13 AJD69765.1 - 0.063 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein Tail_spike_N PF18668.1 AJD69766.1 - 0.016 15.0 0.1 0.046 13.6 0.1 1.7 2 0 0 2 2 2 0 Tail spike TSP1/Gp66 receptor binding N-terminal domain HpcH_HpaI PF03328.14 AJD69767.1 - 6.9e-27 94.0 0.0 9.1e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family TonB_dep_Rec PF00593.24 AJD69768.1 - 5e-41 142.1 28.1 5e-41 142.1 28.1 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD69768.1 - 4.7e-23 81.8 0.8 1.4e-22 80.3 0.8 1.9 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69768.1 - 6.7e-08 31.9 1.0 2.5e-06 26.8 1.0 2.3 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family Toluene_X PF03349.16 AJD69768.1 - 0.0082 14.8 0.4 0.17 10.4 0.1 2.2 2 0 0 2 2 2 1 Outer membrane protein transport protein (OMPP1/FadL/TodX) OMP_b-brl PF13505.6 AJD69768.1 - 0.43 10.7 4.0 0.86 9.7 0.1 2.7 2 1 0 3 3 3 0 Outer membrane protein beta-barrel domain ATP-grasp_3 PF02655.14 AJD69769.1 - 7.6e-07 29.3 0.0 2.4e-06 27.7 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 AJD69769.1 - 4.4e-05 23.1 0.0 0.00039 20.0 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain LAL_C2 PF18603.1 AJD69769.1 - 0.00013 22.1 0.2 0.00025 21.1 0.2 1.5 1 0 0 1 1 1 1 L-amino acid ligase C-terminal domain 2 GARS_A PF01071.19 AJD69769.1 - 0.0025 17.6 0.0 2 8.2 0.0 2.2 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 AJD69769.1 - 0.022 14.3 0.0 0.063 12.8 0.0 1.7 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus IucA_IucC PF04183.12 AJD69770.1 - 7.7e-35 120.6 2.3 2e-34 119.2 2.3 1.8 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 AJD69770.1 - 3.7e-19 69.7 3.9 3.7e-19 69.7 3.9 2.4 3 0 0 3 3 3 1 Ferric iron reductase FhuF-like transporter Leader_Trp PF08255.11 AJD69770.1 - 6.7 7.0 6.5 13 6.0 0.3 2.9 2 0 0 2 2 2 0 Trp-operon Leader Peptide MFS_1 PF07690.16 AJD69771.1 - 7.2e-19 67.9 55.4 7.1e-15 54.8 29.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Na_Pi_cotrans PF02690.15 AJD69771.1 - 0.024 14.7 0.2 0.086 12.9 0.2 2.0 1 0 0 1 1 1 0 Na+/Pi-cotransporter Adeno_E3 PF06040.11 AJD69771.1 - 0.091 12.9 0.2 1.7 8.8 0.1 2.3 2 0 0 2 2 2 0 Adenovirus E3 protein Sugar_tr PF00083.24 AJD69771.1 - 1 8.2 9.8 0.019 13.8 1.3 2.2 2 0 0 2 2 2 0 Sugar (and other) transporter IucA_IucC PF04183.12 AJD69772.1 - 1.1e-42 146.3 1.1 2.1e-42 145.4 0.6 1.8 2 0 0 2 2 2 1 IucA / IucC family FhuF PF06276.12 AJD69772.1 - 2.7e-35 122.2 4.5 6.2e-35 121.0 4.5 1.7 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter TPR_10 PF13374.6 AJD69772.1 - 0.14 12.1 0.9 25 4.9 0.1 3.2 2 0 0 2 2 2 0 Tetratricopeptide repeat Orn_Arg_deC_N PF02784.16 AJD69773.1 - 1.7e-27 96.4 0.0 2e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 AJD69773.1 - 1.9e-15 56.8 0.0 2.2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 AJD69773.1 - 1.2e-14 54.5 0.4 3.2e-14 53.1 0.4 1.7 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain NACHT_N PF17100.5 AJD69773.1 - 0.014 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of NWD NACHT-NTPase CobS PF02654.15 AJD69776.1 - 2.7e-51 174.7 26.2 3.1e-51 174.5 26.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase BALF1 PF06861.11 AJD69776.1 - 0.14 11.8 0.6 0.3 10.7 0.6 1.5 1 0 0 1 1 1 0 BALF1 protein His_Phos_1 PF00300.22 AJD69777.1 - 3.8e-42 144.2 0.1 4.5e-42 143.9 0.1 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) DBI_PRT PF02277.17 AJD69778.1 - 1.8e-126 421.9 16.5 2e-126 421.7 16.5 1.0 1 0 0 1 1 1 1 Phosphoribosyltransferase CobU PF02283.16 AJD69779.1 - 1e-59 200.9 0.0 1.1e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_28 PF13521.6 AJD69779.1 - 0.021 15.1 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD69779.1 - 0.021 15.2 0.3 0.037 14.4 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain GATase_3 PF07685.14 AJD69780.1 - 3e-57 193.4 0.0 4.2e-57 192.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 AJD69780.1 - 8.2e-22 77.6 0.0 1.3e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 AJD69780.1 - 2.6e-19 69.8 0.0 5.2e-19 68.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 AJD69780.1 - 0.0073 16.2 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Aminotran_1_2 PF00155.21 AJD69781.1 - 3.4e-27 95.6 0.0 4.7e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DUF5545 PF17699.1 AJD69781.1 - 5.7 6.7 7.5 0.68 9.7 0.8 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5545) CobD_Cbib PF03186.13 AJD69783.1 - 1.2e-90 303.5 10.0 1.6e-90 303.1 10.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF1270 PF06900.11 AJD69783.1 - 4.4 7.8 5.4 9.1 6.7 5.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1270) CobA_CobO_BtuR PF02572.15 AJD69784.1 - 7.3e-55 185.9 0.0 9.5e-55 185.5 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Co_AT_N PF12557.8 AJD69784.1 - 5.9e-07 29.2 1.8 1.2e-06 28.3 1.8 1.6 1 0 0 1 1 1 1 Cob(I)alamin adenosyltransferase N terminal TonB_dep_Rec PF00593.24 AJD69787.1 - 1.5e-55 189.9 39.4 1.9e-55 189.6 39.4 1.1 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD69787.1 - 9.9e-30 103.3 1.9 3.2e-29 101.6 0.8 2.5 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69787.1 - 2.4e-05 23.5 0.0 9.8e-05 21.5 0.0 1.9 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family AAA_2 PF07724.14 AJD69788.1 - 9.5e-58 195.1 0.0 1.1e-55 188.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 AJD69788.1 - 7.2e-36 122.3 3.0 7.2e-36 122.3 3.0 3.1 4 0 0 4 4 2 1 AAA lid domain ClpB_D2-small PF10431.9 AJD69788.1 - 1.3e-26 92.5 2.7 2.1e-26 91.8 0.1 2.8 3 0 0 3 3 2 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 AJD69788.1 - 1.2e-24 87.2 0.0 3.4e-13 50.1 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Clp_N PF02861.20 AJD69788.1 - 1.4e-21 76.3 5.6 6.1e-12 45.5 0.1 3.1 3 0 0 3 3 2 2 Clp amino terminal domain, pathogenicity island component AAA_5 PF07728.14 AJD69788.1 - 6.4e-18 65.1 0.0 1.7e-12 47.5 0.0 2.9 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AJD69788.1 - 6.3e-12 46.2 8.4 3.4e-05 24.3 0.1 4.9 4 2 1 5 5 4 2 AAA ATPase domain AAA_22 PF13401.6 AJD69788.1 - 7.2e-09 36.0 0.4 0.0051 17.1 0.1 4.0 2 2 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 AJD69788.1 - 5.1e-08 32.8 0.0 5.2e-05 23.0 0.0 3.1 3 1 1 4 4 3 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 AJD69788.1 - 7.1e-06 25.9 0.0 0.12 12.1 0.0 2.8 2 0 0 2 2 2 2 IstB-like ATP binding protein TniB PF05621.11 AJD69788.1 - 1.2e-05 24.8 0.1 0.052 13.0 0.0 3.9 2 2 1 3 3 3 1 Bacterial TniB protein ATPase_2 PF01637.18 AJD69788.1 - 1.8e-05 24.8 0.3 2 8.3 0.0 3.9 3 0 0 3 3 3 2 ATPase domain predominantly from Archaea AAA_18 PF13238.6 AJD69788.1 - 4.3e-05 24.1 0.0 0.18 12.3 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 AJD69788.1 - 7.3e-05 22.4 0.0 0.17 11.4 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_14 PF13173.6 AJD69788.1 - 0.00011 22.2 0.0 0.35 10.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 AJD69788.1 - 0.00025 20.8 0.0 0.16 11.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 AJD69788.1 - 0.00028 21.1 0.0 0.83 9.9 0.0 2.5 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase DUF815 PF05673.13 AJD69788.1 - 0.00042 19.6 0.0 0.45 9.6 0.0 3.1 3 1 0 3 3 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 AJD69788.1 - 0.00045 20.6 0.0 1.1 9.7 0.0 2.7 2 0 0 2 2 2 1 RNA helicase RuvB_N PF05496.12 AJD69788.1 - 0.00047 19.9 2.5 2.8 7.7 0.4 4.2 4 1 0 4 4 3 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 AJD69788.1 - 0.00047 19.6 0.0 0.82 9.0 0.0 3.3 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 AJD69788.1 - 0.00088 19.2 0.0 2 8.3 0.0 2.7 2 0 0 2 2 2 2 RsgA GTPase ABC_tran PF00005.27 AJD69788.1 - 0.0011 19.5 0.4 0.62 10.6 0.0 3.3 3 0 0 3 3 3 1 ABC transporter NACHT PF05729.12 AJD69788.1 - 0.0012 18.8 0.0 0.2 11.5 0.0 2.6 2 0 0 2 2 2 1 NACHT domain TsaE PF02367.17 AJD69788.1 - 0.0019 18.2 0.0 1.7 8.6 0.0 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 AJD69788.1 - 0.0025 17.7 0.0 1.9 8.4 0.0 3.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 AJD69788.1 - 0.0033 17.7 2.5 3.8 7.7 0.0 3.9 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.6 AJD69788.1 - 0.0066 16.2 0.0 2.9 7.7 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_25 PF13481.6 AJD69788.1 - 0.0076 15.8 0.8 0.37 10.3 0.0 3.3 4 0 0 4 4 3 1 AAA domain ResIII PF04851.15 AJD69788.1 - 0.012 15.7 0.0 8.1 6.4 0.0 3.2 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 AJD69788.1 - 0.018 15.4 0.0 1.4 9.3 0.0 3.2 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 AJD69788.1 - 0.019 14.2 0.0 2.8 7.2 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.15 AJD69788.1 - 0.021 14.7 0.2 7.7 6.4 0.0 3.2 3 0 0 3 3 3 0 NTPase AAA_23 PF13476.6 AJD69788.1 - 0.029 14.9 19.9 0.19 12.2 0.0 4.1 2 1 1 3 3 3 0 AAA domain AAA_33 PF13671.6 AJD69788.1 - 0.037 14.2 0.0 19 5.4 0.0 3.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 AJD69788.1 - 0.038 13.8 0.0 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 AJD69788.1 - 0.041 13.6 0.0 0.72 9.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DNA_pol3_delta2 PF13177.6 AJD69788.1 - 0.055 13.3 0.0 3.6 7.4 0.0 2.6 2 0 0 2 2 2 0 DNA polymerase III, delta subunit APC_N_CC PF16689.5 AJD69788.1 - 0.13 12.4 1.4 0.36 10.9 0.9 2.1 1 1 0 1 1 1 0 Coiled-coil N-terminus of APC, dimerisation domain V_ATPase_I PF01496.19 AJD69788.1 - 3.8 5.3 5.2 5.5 4.8 5.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CorA PF01544.18 AJD69788.1 - 4.1 6.6 6.1 93 2.2 8.2 2.2 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein ATP-cone PF03477.16 AJD69788.1 - 7.5 7.2 6.5 21 5.7 0.2 3.5 2 1 1 3 3 3 0 ATP cone domain ABC_tran PF00005.27 AJD69789.1 - 3.2e-30 105.4 0.0 4.3e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD69789.1 - 1.5e-05 25.0 0.0 0.011 15.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AJD69789.1 - 6.5e-05 23.2 0.0 0.00016 21.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD69789.1 - 0.0003 21.2 1.8 0.00053 20.4 1.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD69789.1 - 0.00062 19.7 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 AJD69789.1 - 0.00072 19.8 0.1 0.24 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 AJD69789.1 - 0.0014 18.4 0.7 0.055 13.2 0.3 2.4 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 AJD69789.1 - 0.0014 18.1 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 AJD69789.1 - 0.0021 18.1 0.0 0.0041 17.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_33 PF13671.6 AJD69789.1 - 0.0048 17.1 0.0 0.022 14.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AJD69789.1 - 0.005 15.7 0.0 2.7 6.7 0.0 2.6 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 AJD69789.1 - 0.0067 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 AJD69789.1 - 0.027 14.4 0.1 0.058 13.3 0.1 1.6 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 AJD69789.1 - 0.03 13.5 0.1 0.084 12.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 AJD69789.1 - 0.051 14.1 0.0 0.07 13.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AJD69789.1 - 0.066 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 AJD69789.1 - 0.14 12.6 0.0 0.5 10.8 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 AJD69789.1 - 0.15 12.2 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain ATPase_2 PF01637.18 AJD69789.1 - 0.26 11.2 0.0 0.4 10.6 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea BPD_transp_1 PF00528.22 AJD69790.1 - 5.2e-24 85.0 11.2 9.6e-24 84.1 11.2 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Romo1 PF10247.9 AJD69790.1 - 0.036 14.4 0.1 0.098 13.0 0.1 1.7 1 0 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 NMT1 PF09084.11 AJD69791.1 - 1.1e-11 45.2 0.0 2.3e-11 44.0 0.0 1.5 2 0 0 2 2 2 1 NMT1/THI5 like NMT1_2 PF13379.6 AJD69791.1 - 2.1e-10 40.8 0.4 5.4e-10 39.4 0.0 1.9 2 1 0 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 AJD69791.1 - 6.3e-09 35.6 0.0 5.7e-07 29.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 AJD69791.1 - 7.3e-07 28.9 0.0 3.6e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 NMT1-like family Phosphonate-bd PF12974.7 AJD69791.1 - 1.4e-06 28.1 0.0 2.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LPD22 PF18834.1 AJD69791.1 - 0.048 13.9 0.1 0.12 12.6 0.1 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 Aldo_ket_red PF00248.21 AJD69792.1 - 2.9e-69 233.5 0.0 3.3e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family B12-binding PF02310.19 AJD69792.1 - 0.026 14.6 0.1 9.9 6.2 0.0 2.5 2 1 0 2 2 2 0 B12 binding domain Bac_luciferase PF00296.20 AJD69793.1 - 9.8e-64 215.7 12.1 1.3e-63 215.3 12.1 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase TonB_dep_Rec PF00593.24 AJD69794.1 - 3.2e-46 159.2 28.4 7.6e-46 157.9 28.3 1.6 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69794.1 - 4.1e-17 62.7 0.8 4.1e-17 62.7 0.8 2.0 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69794.1 - 3.4e-09 36.2 0.0 4e-08 32.7 0.0 2.1 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family GIY-YIG PF01541.24 AJD69795.1 - 8.4e-12 45.2 0.0 9.8e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain GST_C_3 PF14497.6 AJD69796.1 - 8.8e-29 99.6 0.1 3.3e-28 97.8 0.0 1.9 2 1 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD69796.1 - 0.0013 18.9 0.1 0.0038 17.4 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain DUF3014 PF11219.8 AJD69797.1 - 1.7e-53 181.1 0.2 2.3e-53 180.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3014) Harakiri PF15196.6 AJD69797.1 - 1.9 9.0 9.1 6.6 7.3 1.8 3.4 2 1 1 3 3 3 0 Activator of apoptosis harakiri LprI PF07007.12 AJD69798.1 - 1.7e-06 28.6 3.4 1.7e-06 28.6 3.4 2.8 3 1 0 3 3 3 1 Lysozyme inhibitor LprI APG17 PF04108.12 AJD69798.1 - 0.12 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 Proton_antipo_N PF00662.20 AJD69799.1 - 1.1 9.4 2.9 1.3 9.1 0.2 2.6 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3007 PF11460.8 AJD69799.1 - 1.1 9.5 3.6 3.2 8.1 0.3 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) PspC PF04024.12 AJD69799.1 - 4.4 7.2 11.6 7.5 6.5 0.1 3.9 3 0 0 3 3 3 0 PspC domain FG-GAP PF01839.23 AJD69800.1 - 0.0085 16.2 0.2 0.0085 16.2 0.2 2.5 2 0 0 2 2 2 1 FG-GAP repeat VCBS PF13517.6 AJD69800.1 - 0.017 15.7 0.7 0.15 12.6 0.5 2.5 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TAD2 PF18521.1 AJD69800.1 - 0.055 13.4 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 Transactivation domain 2 SH3_16 PF18348.1 AJD69800.1 - 3.4 7.5 7.4 3.1 7.7 0.6 3.0 2 2 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain DUF3574 PF12098.8 AJD69801.1 - 4.4e-32 109.9 0.0 5.6e-32 109.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3574) TonB_dep_Rec PF00593.24 AJD69802.1 - 9.7e-42 144.4 54.5 9.7e-42 144.4 54.5 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD69802.1 - 2.9e-22 79.3 0.7 8e-22 77.8 0.7 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain PA14 PF07691.12 AJD69802.1 - 0.11 12.3 0.3 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 PA14 domain Trehalose_PPase PF02358.16 AJD69803.1 - 3.3e-34 118.0 0.0 3.9e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 AJD69803.1 - 2.2e-06 27.6 0.0 0.056 13.2 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 AJD69803.1 - 0.013 15.1 0.0 0.28 10.7 0.0 2.4 1 1 1 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 AJD69803.1 - 0.08 13.2 0.1 0.37 11.1 0.1 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_hydro_15 PF00723.21 AJD69804.1 - 1.5e-26 93.2 0.0 8.5e-22 77.5 0.0 2.2 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Trehalase PF01204.18 AJD69804.1 - 0.0064 15.4 0.1 2.3 7.0 0.0 2.5 3 0 0 3 3 3 2 Trehalase Glyco_transf_20 PF00982.21 AJD69805.1 - 4.3e-121 404.9 0.0 5.2e-121 404.6 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_trans_1_4 PF13692.6 AJD69805.1 - 0.072 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 PQQ PF01011.21 AJD69806.1 - 2.2e-32 109.5 9.2 2.4e-06 27.2 0.1 8.6 8 0 0 8 8 8 7 PQQ enzyme repeat PQQ_2 PF13360.6 AJD69806.1 - 1.6e-19 70.4 7.6 2.6e-06 27.2 1.3 3.6 3 0 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 AJD69806.1 - 2.2e-05 24.8 36.9 1.3 9.6 0.6 9.7 8 3 0 8 8 8 5 PQQ-like domain MCPsignal PF00015.21 AJD69807.1 - 2.6e-54 183.6 28.5 6.7e-54 182.3 15.1 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 AJD69807.1 - 0.00083 19.4 13.9 0.0031 17.5 1.5 3.0 3 0 0 3 3 2 2 Laminin Domain II PAS_7 PF12860.7 AJD69807.1 - 0.0034 17.5 2.9 0.047 13.9 0.0 3.5 3 2 0 3 3 3 1 PAS fold QWRF PF04484.12 AJD69807.1 - 0.029 14.1 0.3 0.029 14.1 0.3 2.1 2 0 0 2 2 2 0 QWRF family PAS_4 PF08448.10 AJD69807.1 - 0.031 14.5 2.2 0.071 13.4 0.0 2.8 4 0 0 4 4 3 0 PAS fold PAS_9 PF13426.7 AJD69807.1 - 0.051 13.8 0.0 0.19 12.0 0.0 2.0 1 0 0 1 1 1 0 PAS domain PAS_8 PF13188.7 AJD69807.1 - 0.079 13.0 0.1 0.31 11.1 0.1 2.0 2 0 0 2 2 1 0 PAS domain Mod_r PF07200.13 AJD69807.1 - 0.095 12.8 5.4 0.31 11.1 1.3 2.3 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF4131 PF13567.6 AJD69807.1 - 0.19 11.3 4.5 0.38 10.4 4.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4736 PF15883.5 AJD69807.1 - 0.33 10.7 0.9 0.69 9.6 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4736) Spc7 PF08317.11 AJD69807.1 - 0.36 9.7 3.8 3.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein HAMP PF00672.25 AJD69807.1 - 0.47 10.9 12.5 2.4 8.6 0.2 5.5 5 1 0 5 5 4 0 HAMP domain CorA PF01544.18 AJD69807.1 - 0.48 9.7 2.5 10 5.3 0.0 2.9 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein CLZ PF16526.5 AJD69807.1 - 0.65 10.4 8.0 6.6 7.2 0.7 3.9 4 0 0 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1664 PF07889.12 AJD69807.1 - 1.2 9.2 11.3 1.6 8.8 1.2 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) COG5 PF10392.9 AJD69807.1 - 1.8 8.7 4.7 2.4 8.3 0.5 2.7 3 1 0 3 3 2 0 Golgi transport complex subunit 5 Tweety PF04906.13 AJD69807.1 - 2 7.0 5.5 9.6 4.7 0.8 2.2 2 0 0 2 2 2 0 Tweety DUF948 PF06103.11 AJD69807.1 - 2.1 8.6 18.5 5.6 7.3 2.8 5.5 3 1 3 6 6 5 0 Bacterial protein of unknown function (DUF948) DUF393 PF04134.12 AJD69808.1 - 2.9e-33 115.6 0.1 3.4e-33 115.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DUF2127 PF09900.9 AJD69808.1 - 0.085 13.1 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) Ntox5 PF15543.6 AJD69808.1 - 0.14 12.0 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial toxin 5 DUF4166 PF13761.6 AJD69809.1 - 3.4e-31 108.4 4.8 3.8e-31 108.3 4.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) UreD PF01774.17 AJD69809.1 - 0.024 14.6 0.1 0.029 14.3 0.1 1.1 1 0 0 1 1 1 0 UreD urease accessory protein Cu-oxidase_4 PF02578.15 AJD69810.1 - 2.3e-73 246.6 0.1 2.7e-73 246.4 0.1 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase PseudoU_synth_2 PF00849.22 AJD69811.1 - 3.8e-34 118.1 0.1 5.2e-34 117.7 0.1 1.2 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AJD69811.1 - 0.00094 18.8 0.0 0.0025 17.5 0.0 1.8 1 0 0 1 1 1 1 S4 domain YfiO PF13525.6 AJD69812.1 - 9.5e-58 195.3 7.4 1.2e-57 195.0 7.4 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein TPR_18 PF13512.6 AJD69812.1 - 2e-41 141.5 6.1 1.1e-40 139.1 2.7 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 AJD69812.1 - 3.9e-09 36.6 6.1 0.02 15.5 0.0 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 AJD69812.1 - 9.1e-09 35.8 15.7 3.1e-07 30.9 0.0 3.4 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD69812.1 - 2.2e-06 28.0 2.4 0.6 11.1 0.1 4.6 3 2 2 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 AJD69812.1 - 2.2e-05 24.2 9.3 0.0081 16.2 0.3 4.9 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_19 PF14559.6 AJD69812.1 - 9.9e-05 22.8 6.0 0.1 13.1 0.0 3.2 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 AJD69812.1 - 0.00031 21.0 2.1 0.00069 19.9 0.1 2.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.9 AJD69812.1 - 0.00031 20.5 0.5 0.0045 16.7 0.0 2.3 2 1 0 2 2 2 1 Tetratricopeptide repeat-like domain ANAPC3 PF12895.7 AJD69812.1 - 0.017 15.3 5.7 0.028 14.6 0.2 2.5 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 AJD69812.1 - 0.63 10.0 12.9 1.1 9.2 0.4 5.1 6 1 0 6 6 6 0 Tetratricopeptide repeat Glyco_hydro_53 PF07745.13 AJD69813.1 - 0.00035 19.7 0.0 0.00057 19.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 NAD_synthase PF02540.17 AJD69814.1 - 3.4e-69 232.6 0.0 4.8e-69 232.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 AJD69814.1 - 1.7e-23 83.3 0.0 2.4e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase QueC PF06508.13 AJD69814.1 - 0.025 14.1 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF559 PF04480.12 AJD69815.1 - 2.5e-35 120.6 0.1 2.7e-35 120.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF559) MTES_1575 PF18741.1 AJD69815.1 - 8.5e-09 35.5 0.0 1.1e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 REase_MTES_1575 HTH_Tnp_1 PF01527.20 AJD69816.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69816.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69816.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD69816.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD69816.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD69816.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD69816.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD69816.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD69816.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD69816.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD69816.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD69816.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD69816.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD69816.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD69816.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD69816.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD69816.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD69816.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD69816.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD69816.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD69816.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD69817.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD69817.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD69817.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain E3_UbLigase_EDD PF11547.8 AJD69818.1 - 0.055 13.2 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD CFTR_R PF14396.6 AJD69819.1 - 0.17 11.4 0.1 0.27 10.7 0.1 1.3 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain SLT_2 PF13406.6 AJD69820.1 - 3.6e-104 348.1 0.5 5.6e-104 347.5 0.5 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain PG_binding_1 PF01471.18 AJD69820.1 - 1e-11 44.9 4.2 1e-11 44.9 1.3 2.5 2 0 0 2 2 2 1 Putative peptidoglycan binding domain SLT PF01464.20 AJD69820.1 - 0.0037 16.9 0.0 0.028 14.1 0.0 2.1 1 1 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 AJD69820.1 - 0.025 15.1 0.0 0.065 13.7 0.0 1.9 1 1 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DUF604 PF04646.12 AJD69820.1 - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF604 A_thal_3526 PF09713.10 AJD69820.1 - 0.23 11.8 0.0 8.9 6.7 0.0 2.5 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) DDE_Tnp_Tn3 PF01526.17 AJD69821.1 - 3.7e-147 490.2 0.0 5.3e-147 489.6 0.0 1.2 1 0 0 1 1 1 1 Tn3 transposase DDE domain DUF4158 PF13700.6 AJD69821.1 - 9e-27 93.9 3.3 9.5e-27 93.9 0.4 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4158) Phage_integrase PF00589.22 AJD69822.1 - 2.6e-15 56.6 0.0 4.4e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family DUF4129 PF13559.6 AJD69823.1 - 0.0075 16.5 5.0 0.0075 16.5 5.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Phage_int_SAM_1 PF02899.17 AJD69823.1 - 0.016 15.5 1.0 0.023 15.0 1.0 1.3 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 AJD69823.1 - 0.05 14.1 0.0 0.068 13.7 0.0 1.2 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Hormone_3 PF00159.18 AJD69823.1 - 0.26 11.4 1.7 8.3 6.6 0.2 2.8 3 1 0 3 3 3 0 Pancreatic hormone peptide KfrA_N PF11740.8 AJD69824.1 - 1.7e-18 67.4 12.3 1.7e-18 67.4 12.3 5.5 1 1 4 5 5 5 1 Plasmid replication region DNA-binding N-term BLOC1_2 PF10046.9 AJD69824.1 - 0.013 15.8 0.7 0.013 15.8 0.7 2.9 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BRE1 PF08647.11 AJD69824.1 - 0.84 9.8 26.8 0.95 9.6 7.9 4.2 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase Sec8_exocyst PF04048.14 AJD69824.1 - 0.97 9.3 10.9 1.5 8.7 1.7 3.5 2 1 0 3 3 3 0 Sec8 exocyst complex component specific domain Tropomyosin_1 PF12718.7 AJD69824.1 - 1.2 9.3 34.4 0.38 10.9 7.6 4.2 1 1 3 4 4 4 0 Tropomyosin like Fez1 PF06818.15 AJD69824.1 - 2 8.8 39.0 5 7.5 20.0 2.6 1 1 1 2 2 2 0 Fez1 HMMR_N PF15905.5 AJD69824.1 - 8.1 5.8 28.1 0.3 10.5 16.9 2.2 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal FAM184 PF15665.5 AJD69824.1 - 8.5 6.1 43.8 0.62 9.8 30.8 2.2 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B DHR10 PF18595.1 AJD69824.1 - 8.5 6.5 58.1 0.74 9.9 22.0 4.4 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain ART PF01129.18 AJD69825.1 - 1.1e-07 31.4 0.2 1.5e-07 30.9 0.2 1.3 1 0 0 1 1 1 1 NAD:arginine ADP-ribosyltransferase ADPrib_exo_Tox PF03496.14 AJD69825.1 - 0.00011 21.6 0.0 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 ADP-ribosyltransferase exoenzyme DDE_Tnp_IS1595 PF12762.7 AJD69828.1 - 2.3e-35 121.9 3.4 1.8e-34 119.0 3.4 2.2 1 1 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 AJD69828.1 - 2.4e-08 33.8 5.5 2.4e-08 33.8 5.5 2.0 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 AJD69828.1 - 0.0052 16.9 0.3 4.2 7.6 0.1 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Ribosomal_L37ae PF01780.19 AJD69828.1 - 0.011 15.8 0.3 0.031 14.3 0.3 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.11 AJD69828.1 - 0.029 14.3 1.9 0.059 13.3 1.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 AJD69828.1 - 0.11 12.5 0.9 0.21 11.7 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 AJD69828.1 - 0.16 11.5 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 AJD69828.1 - 0.28 10.9 7.9 4.2 7.2 1.5 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain CoA_binding PF02629.19 AJD69830.1 - 7.2e-31 106.7 3.8 7.2e-31 106.7 3.8 2.1 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 AJD69830.1 - 4.3e-19 68.8 1.0 7.3e-19 68.1 1.0 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 AJD69830.1 - 1.1e-11 44.7 0.2 2.4e-11 43.6 0.0 1.7 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 AJD69830.1 - 0.00024 21.6 0.1 0.00052 20.5 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain IlvN PF07991.12 AJD69830.1 - 0.0027 17.3 0.3 0.0061 16.2 0.3 1.5 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 AJD69830.1 - 0.11 13.3 0.1 0.27 12.1 0.1 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.10 AJD69831.1 - 5.4e-73 244.9 0.2 8e-73 244.3 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 AJD69831.1 - 2.7e-26 92.2 1.5 4.7e-26 91.5 1.5 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 AJD69831.1 - 1e-13 51.3 0.0 2.7e-13 49.9 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 AJD69831.1 - 0.0031 17.3 0.0 0.0067 16.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Citrate_bind PF16114.5 AJD69831.1 - 0.0089 15.5 0.9 0.015 14.8 0.9 1.3 1 0 0 1 1 1 1 ATP citrate lyase citrate-binding HATPase_c PF02518.26 AJD69832.1 - 1.6e-17 64.0 0.0 2.4e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD69832.1 - 5.5e-15 55.2 0.4 2.1e-14 53.3 0.4 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AJD69832.1 - 0.00014 21.8 0.0 0.00029 20.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 AJD69832.1 - 0.0021 18.0 0.0 0.0077 16.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD69832.1 - 0.0058 16.6 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold MLTR_LBD PF17765.1 AJD69832.1 - 0.023 14.8 0.7 0.023 14.8 0.7 2.0 2 1 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain ThrE PF06738.12 AJD69832.1 - 2.2 7.6 12.7 0.33 10.3 7.4 2.3 2 1 0 2 2 2 0 Putative threonine/serine exporter Sigma54_activat PF00158.26 AJD69833.1 - 2.6e-66 222.5 0.0 3.5e-66 222.0 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 AJD69833.1 - 2.2e-29 101.9 0.0 9.4e-29 99.8 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 AJD69833.1 - 2.5e-25 89.2 0.0 1.1e-24 87.1 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 AJD69833.1 - 2.5e-15 56.0 2.6 1.3e-14 53.6 2.6 2.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AJD69833.1 - 0.00021 21.3 0.0 0.0004 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 AJD69833.1 - 0.00067 19.1 0.0 0.012 15.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 AJD69833.1 - 0.0097 16.3 0.3 0.029 14.8 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain HTH_30 PF13556.6 AJD69833.1 - 0.069 13.0 0.8 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_50 PF18024.1 AJD69833.1 - 0.11 12.2 0.1 0.23 11.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 AJD69833.1 - 0.15 12.5 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AJD69833.1 - 0.16 12.2 0.0 0.52 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 AJD69837.1 - 2e-88 296.0 0.6 2.8e-88 295.5 0.6 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSE_N PF05157.15 AJD69837.1 - 1e-20 74.0 0.3 2.6e-20 72.7 0.3 1.7 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_30 PF13604.6 AJD69837.1 - 0.0018 18.1 0.0 0.0062 16.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD69837.1 - 0.01 16.2 0.0 0.026 14.9 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 AJD69837.1 - 0.02 14.4 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.6 AJD69837.1 - 0.03 14.6 0.0 0.069 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 AJD69837.1 - 0.07 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_7 PF12775.7 AJD69837.1 - 0.083 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF3247 PF11607.8 AJD69837.1 - 0.086 13.1 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3247) AAA_29 PF13555.6 AJD69837.1 - 0.11 12.2 0.0 0.43 10.4 0.1 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Pilin PF00114.19 AJD69838.1 - 2.7e-22 79.8 1.4 3.3e-22 79.5 1.4 1.1 1 0 0 1 1 1 1 Pilin (bacterial filament) N_methyl PF07963.12 AJD69838.1 - 3.9e-09 35.7 4.0 7.9e-09 34.7 4.0 1.6 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif Antirestrict PF03230.13 AJD69838.1 - 0.042 13.9 0.1 0.33 11.0 0.1 2.1 1 1 1 2 2 2 0 Antirestriction protein Pilin PF00114.19 AJD69839.1 - 1.2e-23 84.0 9.1 1.5e-23 83.8 9.1 1.1 1 0 0 1 1 1 1 Pilin (bacterial filament) N_methyl PF07963.12 AJD69839.1 - 3.4e-12 45.3 3.7 5.8e-12 44.6 3.7 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif T2SSF PF00482.23 AJD69840.1 - 3.4e-61 204.7 4.5 9.7e-30 103.1 0.2 2.4 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Baculo_VP1054 PF05789.11 AJD69840.1 - 0.016 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Baculovirus VP1054 protein DUF4229 PF14012.6 AJD69840.1 - 0.029 14.4 1.2 0.029 14.4 1.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) DUF4395 PF14340.6 AJD69840.1 - 1.4 9.2 9.3 0.081 13.3 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) DiS_P_DiS PF06750.13 AJD69841.1 - 6.8e-27 93.4 0.0 1.7e-26 92.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain Peptidase_A24 PF01478.18 AJD69841.1 - 1.1e-23 83.7 7.5 1.1e-23 83.7 7.5 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family CoaE PF01121.20 AJD69842.1 - 2.5e-57 193.5 0.0 3.4e-57 193.0 0.0 1.2 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_33 PF13671.6 AJD69842.1 - 0.00015 22.0 0.4 0.0011 19.1 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 AJD69842.1 - 0.084 13.2 1.3 0.21 12.0 1.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 AJD69842.1 - 0.17 12.1 1.4 0.74 10.0 0.1 2.5 2 1 0 2 2 2 0 AAA domain RHS_repeat PF05593.14 AJD69843.1 - 1.4e-55 185.2 151.7 1.1e-09 38.6 6.1 22.4 14 7 12 26 26 26 21 RHS Repeat RHS PF03527.14 AJD69843.1 - 0.058 13.2 2.0 0.19 11.5 0.0 3.2 3 0 0 3 3 3 0 RHS protein SymE_toxin PF08845.10 AJD69844.1 - 5.5e-07 29.5 0.0 8.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system HTH_Tnp_1 PF01527.20 AJD69845.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69845.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69845.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD69845.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD69845.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD69845.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD69845.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD69845.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD69845.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD69845.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD69845.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD69845.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD69845.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD69845.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD69845.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD69845.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD69845.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD69845.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD69845.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD69845.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD69845.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD69846.1 - 2.7e-32 111.5 0.3 5e-32 110.6 0.1 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD69846.1 - 1.1e-14 54.3 1.9 3.3e-14 52.7 1.9 1.8 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AJD69846.1 - 2.4e-12 46.8 0.1 4.4e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD69846.1 - 2.2e-10 40.1 0.0 1.2e-09 37.8 0.0 2.2 2 1 1 3 3 3 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AJD69846.1 - 2.5e-05 24.5 0.0 3.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AJD69846.1 - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease HisKA PF00512.25 AJD69847.1 - 1.8e-16 59.9 1.6 3.8e-16 58.9 0.9 2.0 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 AJD69847.1 - 5.2e-14 52.7 0.0 1.1e-13 51.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AJD69847.1 - 3.5e-05 24.1 0.0 0.00011 22.6 0.0 1.9 1 0 0 1 1 1 1 HAMP domain PepSY_TM PF03929.16 AJD69847.1 - 0.097 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 PepSY-associated TM region LapA_dom PF06305.11 AJD69847.1 - 0.22 11.4 1.3 4.7 7.1 0.1 2.6 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Response_reg PF00072.24 AJD69848.1 - 7.3e-27 93.8 0.0 2e-26 92.3 0.1 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD69848.1 - 1.4e-17 63.5 0.0 2.6e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Glyco_transf_4 PF13439.6 AJD69848.1 - 0.0099 15.9 0.3 0.28 11.2 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 HTH_20 PF12840.7 AJD69848.1 - 0.024 14.7 1.0 0.052 13.6 0.1 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain PilI PF10623.9 AJD69849.1 - 0.027 14.6 0.3 0.04 14.1 0.3 1.3 1 0 0 1 1 1 0 Plasmid conjugative transfer protein PilI Rimk_N PF18030.1 AJD69850.1 - 3.9e-41 139.4 0.0 6.1e-41 138.7 0.0 1.3 1 0 0 1 1 1 1 RimK PreATP-grasp domain RimK PF08443.11 AJD69850.1 - 7.5e-41 139.8 0.0 9.7e-41 139.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 AJD69850.1 - 1.7e-13 50.4 0.0 2.3e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 AJD69850.1 - 0.012 14.8 0.0 0.8 8.9 0.1 2.1 1 1 1 2 2 2 0 YheC/D like ATP-grasp GARS_A PF01071.19 AJD69850.1 - 0.013 15.3 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 AJD69850.1 - 0.047 12.9 0.0 0.35 10.1 0.0 2.0 1 1 0 1 1 1 0 Sugar-transfer associated ATP-grasp CBM_48 PF02922.18 AJD69851.1 - 6.3e-21 74.5 0.0 2.4e-20 72.7 0.0 2.0 3 0 0 3 3 3 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 AJD69851.1 - 4.6e-20 72.5 0.6 3.8e-13 49.7 0.2 3.3 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 AJD69851.1 - 0.0013 17.1 0.0 0.0019 16.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 hDGE_amylase PF14701.6 AJD69851.1 - 0.021 13.9 0.0 0.031 13.4 0.0 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain DUF3459 PF11941.8 AJD69851.1 - 0.024 15.0 0.3 1.8 9.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3459) GHL5 PF14872.6 AJD69851.1 - 0.025 12.7 0.0 0.036 12.1 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 Malt_amylase_C PF16657.5 AJD69851.1 - 0.13 12.4 0.0 0.79 9.9 0.0 2.2 2 0 0 2 2 2 0 Maltogenic Amylase, C-terminal domain DUF3372 PF11852.8 AJD69851.1 - 0.19 11.2 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) Histone_HNS PF00816.21 AJD69852.1 - 6.8e-18 65.3 0.6 8.7e-18 64.9 0.6 1.1 1 0 0 1 1 1 1 H-NS histone family FANC_SAP PF18081.1 AJD69852.1 - 4.4 7.6 9.8 2.7e+02 1.8 9.8 2.6 1 1 0 1 1 1 0 Fanconi anemia-associated nuclease SAP domain SNase PF00565.17 AJD69854.1 - 2.3e-19 69.9 0.0 3.2e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Toxin_13 PF07822.11 AJD69854.1 - 0.039 14.1 0.3 0.1 12.8 0.3 1.8 1 1 0 1 1 1 0 Neurotoxin B-IV-like protein MobA_MobL PF03389.15 AJD69856.1 - 2.4e-45 155.0 8.2 1.1e-44 152.8 1.6 3.5 2 1 0 2 2 2 1 MobA/MobL family TraD PF06412.11 AJD69857.1 - 5.9e-05 22.8 1.3 0.00011 22.0 1.3 1.6 1 1 0 1 1 1 1 Conjugal transfer protein TraD UDG PF03167.19 AJD69859.1 - 6.8e-05 22.9 0.0 0.0001 22.3 0.0 1.4 1 1 0 1 1 1 1 Uracil DNA glycosylase superfamily CBP_BcsF PF11120.8 AJD69859.1 - 0.2 11.8 0.2 0.34 11.1 0.2 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF HEPN_Apea PF18739.1 AJD69860.1 - 1.3e-06 28.8 0.0 0.0001 22.7 0.0 2.9 2 1 0 2 2 2 1 Apea-like HEPN AHH PF14412.6 AJD69861.1 - 1.1e-05 25.5 0.0 4.7e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF1629 PF07791.11 AJD69862.1 - 9.7e-58 193.6 0.0 1.4e-57 193.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) Peptidase_C39 PF03412.15 AJD69863.1 - 0.023 14.5 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase C39 family RadC PF04002.15 AJD69864.1 - 7.8e-44 148.5 0.0 1e-43 148.2 0.0 1.1 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 AJD69864.1 - 2.5e-05 24.0 0.3 4.2e-05 23.3 0.2 1.4 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain Methyltransf_23 PF13489.6 AJD69866.1 - 7.9e-05 22.6 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 AJD69866.1 - 0.00021 20.6 0.0 0.00031 20.1 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_25 PF13649.6 AJD69866.1 - 0.061 14.0 0.0 0.11 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MCPsignal PF00015.21 AJD69867.1 - 2.4e-05 24.2 1.7 3.1e-05 23.8 1.2 1.5 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain GAF_2 PF13185.6 AJD69868.1 - 8e-05 22.9 0.2 0.00023 21.5 0.0 1.8 2 0 0 2 2 2 1 GAF domain GGDEF PF00990.21 AJD69868.1 - 0.0022 17.8 0.0 0.0056 16.4 0.0 1.7 1 1 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GAF PF01590.26 AJD69868.1 - 0.0033 18.1 0.0 0.0058 17.3 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 AJD69869.1 - 2.4e-24 85.7 0.2 6.5e-24 84.3 0.2 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 AJD69869.1 - 1.4e-17 64.2 0.0 2.5e-17 63.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 AJD69869.1 - 2.8e-07 30.7 0.0 4.8e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD69869.1 - 6.7e-05 22.9 0.0 0.00018 21.5 0.0 1.8 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 AJD69869.1 - 9.2e-05 22.4 0.1 0.00049 20.1 0.0 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD69869.1 - 0.051 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 AJD69869.1 - 0.13 12.0 0.0 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Response_reg PF00072.24 AJD69870.1 - 9.7e-16 57.9 0.0 3.5e-15 56.1 0.0 1.7 1 1 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 AJD69870.1 - 0.038 14.3 0.0 0.056 13.7 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Amidase_3 PF01520.18 AJD69872.1 - 2.5e-16 60.3 0.0 6.7e-16 58.9 0.0 1.7 2 1 0 2 2 2 1 N-acetylmuramoyl-L-alanine amidase VARLMGL PF14383.6 AJD69874.1 - 0.18 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 DUF761-associated sequence motif Phage_integrase PF00589.22 AJD69875.1 - 0.0002 21.2 0.0 0.00051 19.9 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family HTH_Tnp_1 PF01527.20 AJD69876.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69876.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69876.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD69876.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD69876.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD69876.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD69876.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD69876.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD69876.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD69876.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) rve PF00665.26 AJD69877.1 - 6.7e-26 90.8 0.0 1.3e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD69877.1 - 1.6e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD69877.1 - 1.5e-05 25.0 0.5 2.9e-05 24.1 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD69877.1 - 0.027 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 DDE domain Phage_integrase PF00589.22 AJD69878.1 - 8.8e-05 22.4 0.2 0.0001 22.1 0.2 1.1 1 0 0 1 1 1 1 Phage integrase family DUF4868 PF16162.5 AJD69879.1 - 2.9e-35 121.9 0.0 4.7e-35 121.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4868) DUF4896 PF16237.5 AJD69880.1 - 0.39 10.6 6.3 0.33 10.8 0.5 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4896) HTH_31 PF13560.6 AJD69881.1 - 1.1e-14 54.4 0.2 1.8e-14 53.8 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD69881.1 - 2.4e-13 49.9 0.0 4.7e-13 49.0 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AJD69881.1 - 8.9e-09 35.3 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 AJD69881.1 - 0.0029 17.4 0.2 0.012 15.5 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 AJD69881.1 - 0.044 14.2 0.0 0.072 13.5 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Pou PF00157.17 AJD69881.1 - 0.049 13.6 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 AJD69881.1 - 0.17 12.0 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA PepSY_2 PF13670.6 AJD69883.1 - 0.012 15.6 0.2 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain PAS_4 PF08448.10 AJD69885.1 - 4.1e-20 72.1 1.2 5.1e-20 71.8 0.2 1.7 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 AJD69885.1 - 8.3e-18 64.9 0.0 1.6e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 AJD69885.1 - 2.1e-07 31.1 0.0 4.4e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AJD69885.1 - 3e-07 30.4 0.0 6.8e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 AJD69885.1 - 0.00064 19.7 3.0 0.00065 19.7 0.1 2.6 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 AJD69885.1 - 0.018 14.9 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCDC144C PF14915.6 AJD69885.1 - 0.073 12.2 1.1 0.11 11.6 1.1 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region DUF3400 PF11880.8 AJD69885.1 - 0.18 11.4 0.2 3.1 7.4 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) PAS_6 PF08348.11 AJD69885.1 - 0.18 11.7 0.0 0.38 10.6 0.0 1.6 1 0 0 1 1 1 0 YheO-like PAS domain CPBP PF02517.16 AJD69886.1 - 5.1e-17 62.0 7.8 5.1e-17 62.0 7.8 2.5 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease Wzy_C PF04932.15 AJD69886.1 - 0.22 11.1 15.2 0.11 12.1 6.3 2.9 2 1 0 2 2 2 0 O-Antigen ligase TIR_2 PF13676.6 AJD69889.1 - 2.7e-15 57.0 0.0 4.5e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 TIR domain TIR PF01582.20 AJD69889.1 - 1.1e-06 28.5 0.0 1.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 TIR domain DUF1863 PF08937.11 AJD69889.1 - 0.011 16.1 0.1 0.032 14.6 0.1 1.8 1 1 0 1 1 1 0 MTH538 TIR-like domain (DUF1863) CHU_C PF13585.6 AJD69890.1 - 0.14 12.3 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 C-terminal domain of CHU protein family Phage_integrase PF00589.22 AJD69891.1 - 4.3e-12 46.2 0.0 1.7e-11 44.2 0.0 1.9 2 1 0 2 2 2 1 Phage integrase family Autotransporter PF03797.19 AJD69892.1 - 3.3e-41 141.6 19.5 3.3e-41 141.6 19.5 2.7 3 0 0 3 3 3 1 Autotransporter beta-domain Lipase_GDSL PF00657.22 AJD69892.1 - 1.1e-09 38.5 0.0 2.4e-09 37.5 0.0 1.5 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase ThiS PF02597.20 AJD69893.1 - 6.5e-15 55.5 0.2 7.2e-15 55.4 0.2 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 AJD69893.1 - 0.0017 18.4 0.2 0.0027 17.7 0.2 1.3 1 1 0 1 1 1 1 TGS domain Lambda_tail_I PF06805.12 AJD69893.1 - 0.0048 17.2 0.0 0.0054 17.0 0.0 1.2 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I ThiG PF05690.14 AJD69894.1 - 2.5e-112 374.2 1.0 2.8e-112 374.0 1.0 1.0 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 AJD69894.1 - 0.00012 21.2 0.8 0.0096 15.0 0.4 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase His_biosynth PF00977.21 AJD69894.1 - 0.0013 18.2 0.1 0.0023 17.4 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 AJD69894.1 - 0.0061 15.8 1.7 0.057 12.6 0.1 2.4 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 AJD69894.1 - 0.011 14.8 0.8 0.02 13.9 0.8 1.5 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Hydrolase PF00702.26 AJD69894.1 - 0.031 14.6 0.0 0.052 13.8 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Carb_kinase PF01256.17 AJD69894.1 - 0.043 13.3 0.1 0.069 12.6 0.1 1.4 1 0 0 1 1 1 0 Carbohydrate kinase Methyltransf_4 PF02390.17 AJD69895.1 - 1.5e-48 164.5 0.0 1.8e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.6 AJD69895.1 - 0.00046 20.8 0.0 0.0042 17.8 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD69895.1 - 0.018 14.8 0.0 0.032 14.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain CitMHS PF03600.16 AJD69896.1 - 3.7e-48 164.3 17.8 3.7e-48 164.3 17.8 1.5 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 AJD69896.1 - 8.1e-21 73.6 0.0 8e-09 35.2 0.0 2.9 3 0 0 3 3 3 2 TrkA-C domain Na_sulph_symp PF00939.19 AJD69896.1 - 7.7e-11 41.7 19.2 7.7e-11 41.7 19.2 3.3 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region MatC_N PF07158.11 AJD69896.1 - 0.00013 22.0 6.1 0.00013 22.0 6.1 3.0 2 1 0 2 2 2 1 Dicarboxylate carrier protein MatC N-terminus Rieske PF00355.26 AJD69897.1 - 2.7e-11 43.2 0.0 3.2e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 AJD69897.1 - 0.0039 17.1 0.0 0.005 16.8 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Phage_holin_3_6 PF07332.11 AJD69898.1 - 0.0024 17.9 3.5 0.0031 17.5 3.5 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Saf_2TM PF18303.1 AJD69898.1 - 0.0036 16.9 0.0 0.0043 16.7 0.0 1.1 1 0 0 1 1 1 1 SAVED-fused 2TM effector domain FAA_hydrolase PF01557.18 AJD69899.1 - 8.7e-53 179.2 0.0 1e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Trs65 PF12735.7 AJD69899.1 - 0.085 12.3 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 TRAPP trafficking subunit Trs65 MscL PF01741.18 AJD69900.1 - 2.9e-44 150.3 0.6 3.2e-44 150.1 0.6 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF3487 PF11990.8 AJD69900.1 - 0.096 12.6 0.9 7.8 6.4 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) Peptidase_M28 PF04389.17 AJD69901.1 - 3e-24 85.8 0.1 5e-24 85.1 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 AJD69901.1 - 5.3e-06 26.3 0.2 9.2e-06 25.5 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peripla_BP_3 PF13377.6 AJD69902.1 - 8.5e-39 133.5 1.8 9.3e-39 133.4 0.7 1.6 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD69902.1 - 3.4e-30 105.4 0.1 4.7e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 AJD69902.1 - 8.3e-22 78.0 0.0 1.1e-21 77.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 AJD69902.1 - 7.9e-16 57.6 0.1 1.9e-15 56.4 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_6 PF13458.6 AJD69902.1 - 1e-06 28.7 0.5 2.4e-06 27.5 0.5 1.5 1 1 0 1 1 1 1 Periplasmic binding protein HTH_Tnp_ISL3 PF13542.6 AJD69902.1 - 0.086 12.3 0.1 0.24 10.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 ANF_receptor PF01094.28 AJD69902.1 - 0.18 10.9 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Receptor family ligand binding region TonB_dep_Rec PF00593.24 AJD69903.1 - 1.9e-34 120.4 41.7 1.9e-34 120.4 41.7 2.6 1 1 2 3 3 3 1 TonB dependent receptor Plug PF07715.15 AJD69903.1 - 1.1e-14 54.9 1.8 4.4e-14 53.0 1.8 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD69903.1 - 1.9e-08 33.7 13.1 6.1e-05 22.2 0.2 3.3 3 0 0 3 3 3 2 Outer membrane protein beta-barrel family Ig_GlcNase PF18368.1 AJD69904.1 - 5.4e-26 90.8 0.2 1.8e-25 89.1 0.1 2.0 2 0 0 2 2 2 1 Exo-beta-D-glucosaminidase Ig-fold domain Laminin_G_3 PF13385.6 AJD69904.1 - 9.4e-14 51.8 0.6 9.4e-14 51.8 0.6 2.3 3 0 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily Glyco_hydro_2 PF00703.21 AJD69904.1 - 1e-13 51.9 0.0 3.3e-13 50.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.18 AJD69904.1 - 8.7e-12 45.3 0.0 2.8e-11 43.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 AJD69904.1 - 2.3e-07 30.2 0.0 4.6e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Ig_mannosidase PF17753.1 AJD69904.1 - 0.00024 20.8 0.0 0.00098 18.8 0.0 2.1 1 0 0 1 1 1 1 Ig-fold domain BetaGal_dom4_5 PF13364.6 AJD69904.1 - 0.0011 19.5 0.0 0.0078 16.8 0.0 2.4 2 0 0 2 2 2 1 Beta-galactosidase jelly roll domain Mannosidase_ig PF17786.1 AJD69904.1 - 0.048 14.3 0.0 2.4 8.8 0.0 2.8 2 0 0 2 2 2 0 Mannosidase Ig/CBM-like domain DUF3426 PF11906.8 AJD69904.1 - 0.14 12.4 4.0 14 5.8 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3426) Docking PF08990.11 AJD69904.1 - 0.61 9.8 2.4 1.4 8.6 2.4 1.7 1 0 0 1 1 1 0 Erythronolide synthase docking Glyco_hydro_97 PF10566.9 AJD69905.1 - 2.2e-102 342.2 0.1 2.7e-102 341.8 0.1 1.1 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 AJD69905.1 - 1e-57 195.3 0.0 1.4e-57 194.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal GH97_C PF14509.6 AJD69905.1 - 2.5e-31 107.7 0.0 8.4e-31 106.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Melibiase PF02065.18 AJD69905.1 - 0.0057 15.7 0.1 0.011 14.7 0.1 1.4 1 0 0 1 1 1 1 Melibiase Neprosin PF03080.15 AJD69906.1 - 4.5e-45 153.7 2.5 6.4e-45 153.2 2.5 1.2 1 0 0 1 1 1 1 Neprosin Neprosin_AP PF14365.6 AJD69906.1 - 0.0017 18.8 0.2 0.091 13.3 0.1 2.6 2 1 0 2 2 2 1 Neprosin activation peptide Lamprin PF06403.11 AJD69906.1 - 8.9 6.3 8.0 0.6 10.1 2.8 1.7 2 0 0 2 2 2 0 Lamprin COesterase PF00135.28 AJD69907.1 - 1.7e-102 343.9 0.0 1.1e-101 341.3 0.0 1.9 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 AJD69907.1 - 7e-08 32.6 2.0 1.7e-05 24.8 0.1 2.5 2 0 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AJD69907.1 - 0.00027 20.5 0.4 0.00064 19.3 0.1 1.6 2 0 0 2 2 2 1 Prolyl oligopeptidase family SpoU_methylase PF00588.19 AJD69908.1 - 5e-29 101.3 0.0 8.3e-29 100.6 0.0 1.4 1 0 0 1 1 1 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 AJD69908.1 - 8.3e-13 48.4 0.1 1.7e-12 47.5 0.1 1.5 1 1 0 1 1 1 1 RNA 2'-O ribose methyltransferase substrate binding Acetyltransf_3 PF13302.7 AJD69909.1 - 9.4e-20 71.7 0.0 1.2e-19 71.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD69909.1 - 2.9e-06 27.5 0.0 4e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Peptidase_M1 PF01433.20 AJD69910.1 - 4.1e-66 222.7 0.0 6.1e-66 222.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 AJD69910.1 - 3.7e-43 147.9 0.0 5.3e-43 147.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 AJD69910.1 - 5e-38 131.4 3.0 5e-38 131.4 3.0 1.6 2 0 0 2 2 2 1 ERAP1-like C-terminal domain HEAT_2 PF13646.6 AJD69910.1 - 0.0092 16.4 1.1 0.0092 16.4 1.1 2.7 2 0 0 2 2 2 1 HEAT repeats DUF1629 PF07791.11 AJD69911.1 - 1.6e-49 167.1 0.0 1.8e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) rve PF00665.26 AJD69912.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD69912.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD69912.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AJD69913.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD69913.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD69913.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD69913.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD69913.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD69913.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD69913.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD69913.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD69913.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD69913.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD69913.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD69913.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD69913.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD69913.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD69913.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD69913.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD69913.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD69913.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD69913.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD69913.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD69913.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein DUF1629 PF07791.11 AJD69914.1 - 4.7e-49 165.6 0.0 8.8e-49 164.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1629) AHH PF14412.6 AJD69915.1 - 3.8e-05 23.7 1.3 0.00021 21.3 0.0 2.9 3 0 0 3 3 3 1 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Phasin PF05597.11 AJD69916.1 - 0.0018 18.3 6.7 0.023 14.7 5.4 2.7 2 1 1 3 3 3 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4407 PF14362.6 AJD69916.1 - 0.016 14.5 9.2 0.18 11.1 9.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Flagellar_rod PF05149.12 AJD69916.1 - 0.024 14.1 11.3 0.023 14.2 3.6 2.2 1 1 1 2 2 2 0 Paraflagellar rod protein DNA_pol_phi PF04931.13 AJD69916.1 - 0.025 12.7 2.7 0.029 12.5 2.7 1.0 1 0 0 1 1 1 0 DNA polymerase phi LemA PF04011.12 AJD69916.1 - 0.037 13.9 5.0 0.056 13.3 5.0 1.3 1 0 0 1 1 1 0 LemA family Syntaxin_2 PF14523.6 AJD69916.1 - 0.039 14.3 6.1 0.072 13.5 6.1 1.4 1 0 0 1 1 1 0 Syntaxin-like protein Prominin PF05478.11 AJD69916.1 - 0.04 11.9 1.8 0.054 11.4 1.8 1.2 1 0 0 1 1 1 0 Prominin ISG65-75 PF11727.8 AJD69916.1 - 0.043 13.0 4.9 0.062 12.5 4.9 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein Pox_A11 PF05061.13 AJD69916.1 - 0.079 12.2 1.6 0.11 11.8 1.6 1.1 1 0 0 1 1 1 0 Poxvirus A11 Protein Spc7 PF08317.11 AJD69916.1 - 0.087 11.7 10.4 0.13 11.1 9.9 1.4 2 0 0 2 2 2 0 Spc7 kinetochore protein TACC_C PF05010.14 AJD69916.1 - 0.19 11.5 11.0 1.6 8.5 2.0 2.3 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CENP-K PF11802.8 AJD69916.1 - 0.22 11.1 6.1 0.3 10.6 6.1 1.1 1 0 0 1 1 1 0 Centromere-associated protein K PLC-beta_C PF08703.10 AJD69916.1 - 0.27 11.2 9.6 0.032 14.2 3.3 2.0 1 1 1 2 2 2 0 PLC-beta C terminal NifU_N PF01592.16 AJD69916.1 - 0.35 11.0 2.3 0.28 11.3 0.3 1.9 2 1 0 2 2 2 0 NifU-like N terminal domain UPF0242 PF06785.11 AJD69916.1 - 0.56 10.3 6.3 1 9.4 6.3 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TAF6_C PF07571.13 AJD69916.1 - 0.84 10.0 4.6 9 6.7 0.1 2.8 1 1 1 2 2 2 0 TAF6 C-terminal HEAT repeat domain ApoLp-III PF07464.11 AJD69916.1 - 1.1 9.4 13.5 1.6 8.8 8.9 2.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DivIVA PF05103.13 AJD69916.1 - 1.3 9.1 14.2 3.3 7.8 13.0 2.1 2 1 0 2 2 1 0 DivIVA protein WXG100 PF06013.12 AJD69916.1 - 3.5 7.9 14.1 3 8.1 3.8 3.3 2 1 0 3 3 3 0 Proteins of 100 residues with WXG FliD_C PF07195.12 AJD69916.1 - 4.1 6.7 8.5 9.7 5.5 0.4 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ABC_tran_CTD PF16326.5 AJD69916.1 - 4.9 7.5 11.6 0.41 10.9 3.0 3.0 2 1 1 3 3 3 0 ABC transporter C-terminal domain Pex19 PF04614.12 AJD69916.1 - 5.2 6.8 8.9 7 6.3 8.9 1.2 1 0 0 1 1 1 0 Pex19 protein family COG2 PF06148.11 AJD69916.1 - 6.6 6.8 8.8 33 4.6 0.2 2.5 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 KxDL PF10241.9 AJD69916.1 - 10 6.5 13.4 5 7.5 2.1 2.9 2 1 0 3 3 2 0 Uncharacterized conserved protein TetR_C_11 PF16859.5 AJD69917.1 - 0.0084 16.4 0.1 0.043 14.1 0.1 2.2 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain ACR_tran PF00873.19 AJD69919.1 - 2.9e-300 998.6 3.5 3.3e-300 998.4 3.5 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD69919.1 - 2.8e-15 56.1 34.7 8.8e-10 38.0 15.1 2.5 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 AJD69919.1 - 4.9e-06 26.1 31.5 0.0013 18.2 11.8 3.0 3 0 0 3 3 3 2 Protein export membrane protein HlyD_D23 PF16576.5 AJD69920.1 - 1.6e-31 109.2 2.8 2.4e-31 108.6 2.3 1.6 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD69920.1 - 8.3e-14 52.2 3.6 5.9e-13 49.5 0.1 3.2 3 1 0 3 3 3 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD69920.1 - 1.3e-07 31.4 1.3 4.3e-07 29.6 0.4 2.4 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AJD69920.1 - 0.013 15.3 0.0 0.29 11.0 0.0 2.5 2 0 0 2 2 2 0 Biotin-requiring enzyme QRPTase_N PF02749.16 AJD69920.1 - 0.066 13.3 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain APS_kinase PF01583.20 AJD69921.1 - 1.5e-70 236.1 0.0 4.3e-70 234.7 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase GTP_EFTU PF00009.27 AJD69921.1 - 2.6e-40 138.0 0.0 4.6e-40 137.3 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 AJD69921.1 - 1.1e-06 28.7 0.2 0.00026 21.1 0.0 3.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 AJD69921.1 - 1.6e-05 25.1 0.0 0.00015 21.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain GTP_EFTU_D2 PF03144.25 AJD69921.1 - 0.00021 21.6 0.2 0.0011 19.3 0.3 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 AAA_18 PF13238.6 AJD69921.1 - 0.00032 21.3 0.0 0.0014 19.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 AJD69921.1 - 0.0014 18.6 0.0 0.34 10.8 0.0 3.1 3 0 0 3 3 3 1 RsgA GTPase AAA_16 PF13191.6 AJD69921.1 - 0.0047 17.3 0.0 0.016 15.6 0.0 1.9 2 0 0 2 2 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD69921.1 - 0.01 15.5 0.0 0.44 10.3 0.0 2.7 3 0 0 3 3 3 0 P-loop containing region of AAA domain GTP_EFTU_D4 PF14578.6 AJD69921.1 - 0.011 15.6 0.2 0.028 14.3 0.2 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 4 ATP_bind_1 PF03029.17 AJD69921.1 - 0.015 15.1 0.0 1.1 9.0 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 AJD69921.1 - 0.022 14.0 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.17 AJD69921.1 - 0.036 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase GTP_EFTU_D3 PF03143.17 AJD69921.1 - 0.042 14.2 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Elongation factor Tu C-terminal domain FeoB_N PF02421.18 AJD69921.1 - 0.12 11.9 0.0 0.43 10.1 0.0 1.9 1 1 0 1 1 1 0 Ferrous iron transport protein B ParA PF10609.9 AJD69921.1 - 0.16 11.4 0.0 0.32 10.4 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase KTI12 PF08433.10 AJD69921.1 - 0.24 10.8 0.0 0.38 10.1 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PAPS_reduct PF01507.19 AJD69922.1 - 3.5e-57 193.2 0.0 4.2e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Flavodoxin_1 PF00258.25 AJD69923.1 - 2.5e-30 105.6 0.0 5e-30 104.6 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin FAD_binding_1 PF00667.20 AJD69923.1 - 4.8e-19 68.8 0.0 4.1e-09 36.3 0.0 2.2 1 1 1 2 2 2 2 FAD binding domain NAD_binding_1 PF00175.21 AJD69923.1 - 1.5e-17 64.2 0.0 3.3e-17 63.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NIR_SIR PF01077.22 AJD69924.1 - 9.6e-46 155.2 0.0 3.2e-41 140.5 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 AJD69924.1 - 3.8e-32 109.9 1.0 6.5e-16 57.9 0.1 3.1 3 0 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain PAPS_reduct PF01507.19 AJD69925.1 - 7.5e-54 182.4 0.0 1.2e-53 181.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PepSY_TM PF03929.16 AJD69926.1 - 7.4e-66 222.7 18.9 7.4e-66 222.7 18.9 1.8 2 1 0 2 2 2 1 PepSY-associated TM region PepSY PF03413.19 AJD69926.1 - 0.0072 16.9 0.0 1.9 9.1 0.0 2.5 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF4079 PF13301.6 AJD69926.1 - 0.01 16.0 5.8 1.2 9.3 0.2 3.9 3 1 0 3 3 3 0 Protein of unknown function (DUF4079) Ni_hydr_CYTB PF01292.20 AJD69926.1 - 0.093 12.3 17.5 0.57 9.7 0.5 3.8 3 1 0 3 3 3 0 Prokaryotic cytochrome b561 DUF4405 PF14358.6 AJD69926.1 - 0.13 12.8 0.1 0.13 12.8 0.1 4.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4405) TonB_dep_Rec PF00593.24 AJD69927.1 - 4.3e-38 132.4 36.5 4.3e-38 132.4 36.5 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD69927.1 - 2.7e-18 66.5 0.2 6.5e-18 65.3 0.2 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain DUF2946 PF11162.8 AJD69928.1 - 0.00028 21.5 22.2 0.00078 20.1 22.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2946) Troponin-I_N PF11636.8 AJD69928.1 - 0.053 13.5 1.0 0.12 12.3 1.0 1.6 1 0 0 1 1 1 0 Troponin I residues 1-32 GntP_permease PF02447.16 AJD69928.1 - 0.55 8.9 5.1 0.084 11.5 0.8 1.6 2 0 0 2 2 2 0 GntP family permease HATPase_c PF02518.26 AJD69929.1 - 7.4e-17 61.9 0.0 1e-16 61.4 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 AJD69929.1 - 4.3e-07 30.6 0.1 7.9e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 AJD69929.1 - 0.00023 21.5 0.0 0.00056 20.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 AJD69929.1 - 0.017 15.2 0.5 0.24 11.5 0.1 2.6 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 AJD69929.1 - 0.097 13.0 0.0 0.32 11.4 0.0 1.9 1 0 0 1 1 1 0 GAF domain LysR_substrate PF03466.20 AJD69931.1 - 3.7e-38 131.0 9.0 3.7e-38 131.0 9.0 1.7 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD69931.1 - 8.7e-17 60.8 1.0 3.6e-16 58.8 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AJD69931.1 - 0.0077 16.1 0.3 0.02 14.8 0.3 1.7 1 0 0 1 1 1 1 MarR family TP_methylase PF00590.20 AJD69932.1 - 3.9e-51 174.0 0.3 5.9e-51 173.4 0.3 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NAD_binding_7 PF13241.6 AJD69932.1 - 8.5e-09 35.8 0.0 1.7e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding PALP PF00291.25 AJD69932.1 - 0.02 14.3 0.3 0.037 13.4 0.3 1.6 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Yop-YscD_cpl PF16697.5 AJD69932.1 - 0.076 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Inner membrane component of T3SS, cytoplasmic domain PALP PF00291.25 AJD69933.1 - 2e-62 211.3 2.4 2.3e-62 211.1 2.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PPP5 PF08321.12 AJD69933.1 - 0.16 12.3 0.0 13 6.2 0.0 2.3 1 1 1 2 2 2 0 PPP5 TPR repeat region PEMT PF04191.13 AJD69934.1 - 1.6e-13 51.0 0.1 2.2e-13 50.5 0.1 1.2 1 0 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.14 AJD69934.1 - 0.0045 17.4 0.2 0.0068 16.8 0.2 1.4 1 1 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Macro PF01661.21 AJD69935.1 - 4.6e-43 146.0 0.0 7.1e-43 145.4 0.0 1.3 1 0 0 1 1 1 1 Macro domain Glycolytic PF00274.19 AJD69936.1 - 3.4e-137 456.8 0.0 4e-137 456.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-I PK PF00224.21 AJD69937.1 - 2.8e-122 408.0 3.4 3.4e-122 407.7 3.4 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 AJD69937.1 - 2.3e-26 92.3 0.0 1.8e-24 86.2 0.0 2.4 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 AJD69937.1 - 0.0038 16.4 1.5 0.0038 16.4 1.5 1.8 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Glyco_hydro_3_C PF01915.22 AJD69937.1 - 0.022 14.7 1.0 0.11 12.5 0.3 2.1 1 1 1 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain IMPDH PF00478.25 AJD69937.1 - 0.079 11.9 0.0 0.079 11.9 0.0 2.0 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain DUF4253 PF14062.6 AJD69937.1 - 0.11 12.6 0.8 15 5.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4253) HAD_2 PF13419.6 AJD69938.1 - 1.3e-34 119.8 0.0 1.5e-34 119.6 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD69938.1 - 1.2e-18 68.2 0.0 9.8e-17 61.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AJD69938.1 - 3.9e-13 50.2 0.1 5.3e-13 49.8 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD69938.1 - 1e-11 44.8 0.1 2.2e-11 43.6 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 AJD69938.1 - 0.001 18.9 0.0 0.66 9.7 0.0 3.0 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 AJD69938.1 - 0.056 13.2 0.0 8.2 6.2 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.6 AJD69938.1 - 0.096 12.8 0.0 11 6.2 0.0 2.5 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PGK PF00162.19 AJD69939.1 - 6e-141 469.8 0.0 6.8e-141 469.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase YdaS_antitoxin PF15943.5 AJD69939.1 - 0.023 14.6 0.3 0.099 12.5 0.0 2.2 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF3999 PF13163.6 AJD69940.1 - 3.6e-25 89.1 11.7 4e-25 88.9 11.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3999) DUF3999 PF13163.6 AJD69941.1 - 1.6e-67 228.6 11.5 1.9e-67 228.3 11.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3999) DUF2339 PF10101.9 AJD69942.1 - 1.6e-138 463.3 147.7 1.6e-138 463.3 147.7 2.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2339) ResB PF05140.14 AJD69942.1 - 0.0091 14.8 0.1 0.015 14.1 0.1 1.2 1 0 0 1 1 1 1 ResB-like family DUF4879 PF16219.5 AJD69943.1 - 0.077 13.2 0.7 0.11 12.7 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4879) SmpA_OmlA PF04355.13 AJD69943.1 - 0.083 12.7 0.7 0.2 11.5 0.7 1.8 1 1 0 1 1 1 0 SmpA / OmlA family Gp_dh_C PF02800.20 AJD69944.1 - 3.1e-65 218.6 0.0 4.2e-65 218.2 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 AJD69944.1 - 1.6e-39 134.3 0.1 3.2e-39 133.4 0.1 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 AJD69944.1 - 0.015 15.4 0.3 0.12 12.5 0.3 2.4 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 AJD69944.1 - 0.088 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CaMKII_AD PF08332.10 AJD69945.1 - 7.9e-48 161.8 0.0 9.4e-48 161.6 0.0 1.1 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain DUF4440 PF14534.6 AJD69945.1 - 4.7e-17 62.3 0.0 6.2e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 AJD69945.1 - 4.1e-15 56.1 0.0 5.2e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 AJD69945.1 - 9.9e-12 45.4 0.1 1.5e-11 44.9 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 AJD69945.1 - 2.5e-08 34.1 0.1 3.8e-08 33.5 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 AJD69945.1 - 0.0022 17.8 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase Big_3_2 PF12245.8 AJD69945.1 - 0.046 14.0 0.1 0.097 12.9 0.1 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain DUF3225 PF11533.8 AJD69945.1 - 0.094 12.4 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3225) NTF2 PF02136.20 AJD69945.1 - 0.099 13.2 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain uDENN PF03456.18 AJD69945.1 - 0.14 12.9 0.0 1.7 9.5 0.0 2.4 1 1 0 1 1 1 0 uDENN domain OmpW PF03922.14 AJD69946.1 - 1.1e-43 149.4 0.0 1.3e-43 149.2 0.0 1.0 1 0 0 1 1 1 1 OmpW family OMP_b-brl PF13505.6 AJD69946.1 - 2.8e-10 40.6 0.9 6.8e-10 39.4 0.9 1.6 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain Opacity PF02462.15 AJD69946.1 - 0.024 14.7 0.0 0.088 12.9 0.0 1.8 1 1 1 2 2 2 0 Opacity family porin protein OmpW PF03922.14 AJD69947.1 - 5.7e-32 111.2 0.0 6.9e-32 110.9 0.0 1.0 1 0 0 1 1 1 1 OmpW family OMP_b-brl PF13505.6 AJD69947.1 - 9e-13 48.7 4.6 1e-12 48.5 4.6 1.0 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain OMP_b-brl_2 PF13568.6 AJD69947.1 - 0.006 16.6 0.4 0.42 10.6 0.0 2.2 2 0 0 2 2 2 2 Outer membrane protein beta-barrel domain S1-P1_nuclease PF02265.16 AJD69948.1 - 1.7e-61 208.3 0.0 1.9e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 S1/P1 Nuclease Lactamase_B PF00753.27 AJD69949.1 - 5.2e-20 72.3 0.5 6.5e-20 72.0 0.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD69949.1 - 0.00036 20.1 0.1 0.00059 19.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SBP_bac_11 PF13531.6 AJD69950.1 - 4.9e-46 157.3 10.4 5.6e-46 157.1 10.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AJD69950.1 - 1.4e-17 64.7 2.2 2.4e-16 60.6 2.2 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AJD69950.1 - 2.5e-05 24.2 0.1 0.14 12.0 0.0 2.1 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 AJD69950.1 - 0.00012 21.8 1.6 0.00015 21.4 1.6 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_6 PF13343.6 AJD69950.1 - 0.0073 15.7 0.1 0.056 12.8 0.1 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 AJD69950.1 - 0.016 14.9 0.8 0.04 13.6 0.2 1.8 1 1 1 2 2 2 0 PBP superfamily domain BPD_transp_1 PF00528.22 AJD69951.1 - 8.1e-21 74.6 11.5 1.1e-20 74.1 11.5 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF5353 PF17304.2 AJD69951.1 - 4.6 7.0 5.3 3.1 7.6 0.5 2.9 3 1 0 3 3 3 0 Family of unknown function (DUF5353) ABC_tran PF00005.27 AJD69952.1 - 1.3e-31 109.9 0.0 1.7e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD69952.1 - 6.1e-07 29.5 1.4 0.0033 17.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD69952.1 - 1.7e-06 27.7 0.0 0.039 13.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AJD69952.1 - 2.5e-05 23.9 0.0 4.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AJD69952.1 - 3.6e-05 24.2 0.3 5.7e-05 23.6 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD69952.1 - 0.00018 21.5 0.0 0.00036 20.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 AJD69952.1 - 0.00023 20.9 0.0 0.00046 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD69952.1 - 0.00071 19.9 0.1 0.0043 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 AJD69952.1 - 0.00088 19.8 0.0 0.0013 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD69952.1 - 0.0028 18.1 0.0 0.048 14.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 AJD69952.1 - 0.0083 16.3 0.1 0.22 11.8 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 AJD69952.1 - 0.011 15.0 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 AJD69952.1 - 0.014 15.5 0.1 0.024 14.7 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 AJD69952.1 - 0.019 15.1 0.1 0.022 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 AJD69952.1 - 0.034 13.9 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal TniB PF05621.11 AJD69952.1 - 0.036 13.5 0.0 3.5 7.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein SRP54 PF00448.22 AJD69952.1 - 0.037 13.6 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.19 AJD69952.1 - 0.043 13.4 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 AJD69952.1 - 0.051 13.5 0.2 0.11 12.4 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 AJD69952.1 - 0.056 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 AJD69952.1 - 0.061 12.4 0.0 0.085 11.9 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein Dynamin_N PF00350.23 AJD69952.1 - 0.064 13.3 0.0 0.099 12.7 0.0 1.2 1 0 0 1 1 1 0 Dynamin family ABC_ATPase PF09818.9 AJD69952.1 - 0.064 12.0 0.0 2.2 7.0 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PhoH PF02562.16 AJD69952.1 - 0.083 12.3 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_27 PF13514.6 AJD69952.1 - 0.083 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AJD69952.1 - 0.09 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 AJD69952.1 - 0.091 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain TruB_C PF09142.11 AJD69952.1 - 0.1 12.4 1.8 6.7 6.6 0.0 2.8 3 0 0 3 3 2 0 tRNA Pseudouridine synthase II, C terminal TsaE PF02367.17 AJD69952.1 - 0.1 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 AJD69952.1 - 0.11 13.1 0.0 0.22 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 AJD69952.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 AJD69952.1 - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FeoB_N PF02421.18 AJD69952.1 - 0.14 11.7 0.1 0.27 10.8 0.1 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B Rad17 PF03215.15 AJD69952.1 - 0.23 11.3 0.0 0.34 10.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 AJD69952.1 - 0.3 10.8 0.0 0.44 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Peptidase_M56 PF05569.11 AJD69954.1 - 4.9e-76 255.8 0.5 7.1e-76 255.2 0.5 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 TonB_C PF03544.14 AJD69954.1 - 1.6e-20 73.3 0.1 3.7e-20 72.2 0.0 1.7 2 0 0 2 2 2 1 Gram-negative bacterial TonB protein C-terminal Penicillinase_R PF03965.16 AJD69955.1 - 2.1e-36 124.7 0.0 2.4e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 AJD69955.1 - 0.00021 21.1 0.0 0.00075 19.3 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.12 AJD69955.1 - 0.00024 21.3 0.0 0.00077 19.6 0.0 1.8 2 0 0 2 2 2 1 PaaX-like protein HTH_20 PF12840.7 AJD69955.1 - 0.0034 17.4 0.5 0.05 13.7 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_9 PF08221.11 AJD69955.1 - 0.016 15.3 0.0 0.052 13.6 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain AcetylCoA_hyd_C PF13336.6 AJD69956.1 - 3.4e-37 127.8 0.0 6.2e-37 126.9 0.0 1.5 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain PI-PLC-C1 PF16670.5 AJD69957.1 - 2.1e-130 434.6 0.0 2.7e-130 434.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoinositide phospholipase C, Ca2+-dependent PI-PLC-X PF00388.19 AJD69957.1 - 0.036 13.6 0.0 0.087 12.4 0.0 1.6 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain TonB_dep_Rec PF00593.24 AJD69958.1 - 2.1e-34 120.2 38.9 2.1e-34 120.2 38.9 2.4 1 1 1 2 2 2 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD69958.1 - 5.9e-20 71.6 3.7 1.1e-19 70.7 3.7 1.4 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD69958.1 - 4e-14 53.1 4.5 1.2e-13 51.6 2.0 2.6 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain YkuD PF03734.14 AJD69959.1 - 7.3e-18 65.4 0.0 1.1e-17 64.8 0.0 1.3 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain PG_binding_1 PF01471.18 AJD69959.1 - 1.8e-10 40.8 0.0 1.8e-09 37.7 0.0 2.2 2 0 0 2 2 2 1 Putative peptidoglycan binding domain Peptidase_M23 PF01551.22 AJD69960.1 - 5.1e-23 81.1 0.0 7.6e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M23 ATPase_gene1 PF09527.10 AJD69960.1 - 0.05 13.8 0.1 0.09 13.0 0.1 1.4 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Peptidase_S21 PF00716.17 AJD69960.1 - 2 8.0 12.6 2.8 7.6 12.6 1.1 1 0 0 1 1 1 0 Assemblin (Peptidase family S21) TonB_dep_Rec PF00593.24 AJD69962.1 - 1.1e-45 157.4 53.4 1.1e-45 157.4 53.4 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD69962.1 - 3.4e-17 63.0 0.4 1.1e-16 61.4 0.4 1.9 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Hydrolase_4 PF12146.8 AJD69963.1 - 3.4e-16 59.2 0.0 1.3e-15 57.4 0.0 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD69963.1 - 1.4e-14 54.3 0.0 1.3e-12 47.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD69963.1 - 7.4e-08 33.3 1.4 9.5e-08 32.9 1.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 AJD69963.1 - 2.7e-05 23.7 0.1 0.0022 17.5 0.1 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DUF2920 PF11144.8 AJD69963.1 - 0.11 11.6 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) PhoPQ_related PF10142.9 AJD69963.1 - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein Transketolase_N PF00456.21 AJD69964.1 - 3.1e-153 509.6 0.0 4e-153 509.3 0.0 1.1 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 AJD69964.1 - 2.3e-44 151.2 0.0 1.4e-43 148.7 0.0 2.1 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 AJD69964.1 - 1.8e-18 66.6 0.1 3.9e-18 65.5 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 AJD69964.1 - 2.4e-06 26.7 0.0 3.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 AJD69964.1 - 6.2e-06 26.1 0.2 0.00018 21.3 0.0 2.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 AJD69964.1 - 3.1e-05 23.3 0.0 0.013 14.8 0.0 2.2 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase SDF PF00375.18 AJD69965.1 - 2e-110 369.5 31.5 2.3e-110 369.3 31.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family BatD PF13584.6 AJD69966.1 - 8.6e-72 242.5 0.0 1.2e-71 242.1 0.0 1.0 1 0 0 1 1 1 1 Oxygen tolerance DUF202 PF02656.15 AJD69966.1 - 0.069 13.6 1.4 0.089 13.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF202) TRAPPC10 PF12584.8 AJD69966.1 - 0.075 12.7 0.1 0.67 9.6 0.0 2.3 3 0 0 3 3 3 0 Trafficking protein particle complex subunit 10, TRAPPC10 TMEM213 PF15192.6 AJD69966.1 - 0.15 12.0 1.5 0.35 10.9 1.5 1.5 1 0 0 1 1 1 0 TMEM213 family VWA_2 PF13519.6 AJD69967.1 - 3e-12 47.1 0.6 1.1e-11 45.3 0.0 2.2 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 AJD69967.1 - 8.7e-10 39.1 0.0 1.5e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain TPR_1 PF00515.28 AJD69967.1 - 2e-09 36.9 1.8 2e-09 36.9 1.8 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 AJD69967.1 - 3.4e-08 34.0 23.9 2.3e-05 24.9 9.7 5.2 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 AJD69967.1 - 3.5e-08 33.0 1.6 3.5e-08 33.0 1.6 3.2 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 AJD69967.1 - 2.4e-06 27.9 1.8 2.4e-06 27.9 1.8 5.6 4 2 1 5 5 5 1 Tetratricopeptide repeat TPR_8 PF13181.6 AJD69967.1 - 5e-06 26.3 1.5 0.00012 22.0 0.2 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 AJD69967.1 - 1.2e-05 24.8 4.1 1.2e-05 24.8 4.1 2.6 2 0 0 2 2 2 1 TPR repeat TPR_6 PF13174.6 AJD69967.1 - 1.7e-05 25.1 0.7 1.7e-05 25.1 0.7 4.9 4 1 0 4 4 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 AJD69967.1 - 0.00027 21.2 4.4 0.00045 20.5 1.1 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 AJD69967.1 - 0.00029 21.3 6.5 0.00029 21.3 6.5 3.8 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 AJD69967.1 - 0.00037 20.3 0.6 0.00037 20.3 0.6 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 AJD69967.1 - 0.0014 18.5 2.3 0.011 15.6 2.3 2.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 AJD69967.1 - 0.0032 17.7 6.1 0.39 11.2 0.6 3.6 3 0 0 3 3 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 AJD69967.1 - 0.0058 16.7 0.6 0.015 15.3 0.6 1.8 1 0 0 1 1 1 1 Fis1 C-terminal tetratricopeptide repeat BatA PF07584.11 AJD69967.1 - 0.021 15.2 6.0 0.021 15.2 6.0 2.8 2 1 0 2 2 2 0 Aerotolerance regulator N-terminal TPR_4 PF07721.14 AJD69967.1 - 0.071 13.8 0.8 0.071 13.8 0.8 5.3 6 0 0 6 6 2 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 AJD69967.1 - 0.95 9.3 9.9 0.064 13.2 2.6 2.7 2 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal TrbC PF04956.13 AJD69967.1 - 7.6 6.8 5.6 2.6 8.3 0.2 2.8 3 1 0 3 3 3 0 TrbC/VIRB2 family VWA PF00092.28 AJD69968.1 - 4.9e-26 92.0 0.0 6.2e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 AJD69968.1 - 1.1e-18 67.8 0.2 1.9e-18 67.1 0.2 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.11 AJD69968.1 - 4.2e-07 29.4 0.5 2.6e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1194) VWA_CoxE PF05762.14 AJD69968.1 - 4.4e-06 26.3 1.6 1.1e-05 24.9 1.6 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein TNFR_16_TM PF18422.1 AJD69968.1 - 0.23 11.4 0.5 0.5 10.4 0.5 1.6 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain BatA PF07584.11 AJD69968.1 - 7.3 7.0 20.9 0.18 12.2 12.3 2.2 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DUF4381 PF14316.6 AJD69969.1 - 2.4e-33 115.4 12.0 2.9e-33 115.2 12.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) DUF463 PF04317.12 AJD69969.1 - 0.1 11.5 0.1 0.11 11.3 0.1 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 DUF3382 PF11862.8 AJD69969.1 - 0.11 12.8 6.6 0.19 12.0 6.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) PC-Esterase PF13839.6 AJD69969.1 - 0.11 12.2 0.3 0.15 11.8 0.3 1.1 1 0 0 1 1 1 0 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p DUF4131 PF13567.6 AJD69969.1 - 0.16 11.6 6.7 0.28 10.8 6.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2567 PF10821.8 AJD69969.1 - 0.17 11.9 6.1 0.22 11.6 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2567) TT_ORF1 PF02956.14 AJD69969.1 - 9.5 4.8 11.9 11 4.6 11.9 1.0 1 0 0 1 1 1 0 TT viral orf 1 DUF58 PF01882.18 AJD69970.1 - 2.9e-19 69.1 2.4 6.4e-19 68.0 1.9 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 AJD69971.1 - 7e-63 210.3 0.0 1e-62 209.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 AJD69971.1 - 6.7e-21 73.9 1.8 6.7e-21 73.9 1.8 2.1 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 AJD69971.1 - 3.8e-12 46.4 0.0 8.6e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 AJD69971.1 - 0.00047 19.9 0.0 0.059 13.1 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 AJD69971.1 - 0.00048 20.6 0.0 0.0026 18.2 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 AJD69971.1 - 0.00063 19.2 0.6 0.3 10.4 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 AJD69971.1 - 0.0015 18.3 0.0 0.007 16.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 AJD69971.1 - 0.0024 17.0 0.0 0.0043 16.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 AJD69971.1 - 0.01 16.2 0.4 0.024 15.0 0.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 AJD69971.1 - 0.14 11.9 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Secretin PF00263.21 AJD69973.1 - 6.3e-49 165.9 0.4 1.1e-48 165.1 0.4 1.4 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein Secretin_N PF03958.17 AJD69973.1 - 1e-14 54.7 0.0 2.6e-14 53.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial type II/III secretion system short domain STN PF07660.14 AJD69973.1 - 1.8e-10 40.5 0.0 2.8e-08 33.4 0.0 2.9 1 1 1 2 2 2 2 Secretin and TonB N terminus short domain AMIN PF11741.8 AJD69973.1 - 0.0088 16.2 0.0 0.026 14.7 0.0 1.9 1 0 0 1 1 1 1 AMIN domain PilP PF04351.13 AJD69974.1 - 2.8e-46 157.1 0.0 3.2e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Pilus assembly protein, PilP Peptidase_S66 PF02016.15 AJD69974.1 - 0.095 12.8 0.0 0.38 10.9 0.0 1.8 1 1 0 1 1 1 0 LD-carboxypeptidase N-terminal domain PilO PF04350.13 AJD69975.1 - 4.3e-50 169.7 0.0 5.5e-50 169.3 0.0 1.1 1 0 0 1 1 1 1 Pilus assembly protein, PilO RIC3 PF15361.6 AJD69975.1 - 0.026 14.9 0.3 0.07 13.5 0.2 1.7 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 DUF2232 PF09991.9 AJD69975.1 - 0.074 12.2 0.1 0.11 11.7 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) SurA_N_2 PF13623.6 AJD69975.1 - 2.3 8.1 6.9 5.6 6.8 6.9 1.7 1 1 0 1 1 1 0 SurA N-terminal domain PilN PF05137.13 AJD69976.1 - 1.8e-24 85.7 0.0 3.1e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 Fimbrial assembly protein (PilN) PilM_2 PF11104.8 AJD69977.1 - 9.5e-103 343.8 0.2 1.1e-102 343.6 0.2 1.0 1 0 0 1 1 1 1 Type IV pilus assembly protein PilM; FtsA PF14450.6 AJD69977.1 - 6.1e-09 36.2 0.0 8.8e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Cell division protein FtsA MreB_Mbl PF06723.13 AJD69977.1 - 2.1e-06 26.8 0.3 0.023 13.5 0.0 2.1 2 0 0 2 2 2 2 MreB/Mbl protein DDR PF08841.10 AJD69977.1 - 0.0002 20.5 0.5 0.0034 16.4 0.0 2.0 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain DUF4781 PF16013.5 AJD69977.1 - 0.0058 15.5 0.3 0.011 14.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4781) VLPT PF07122.11 AJD69977.1 - 0.12 12.1 0.2 0.33 10.7 0.2 1.7 1 0 0 1 1 1 0 Variable length PCR target protein (VLPT) Transgly PF00912.22 AJD69978.1 - 5.5e-57 192.1 0.0 8.2e-57 191.5 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 AJD69978.1 - 1e-28 100.4 0.0 8.1e-22 77.8 0.0 2.7 2 1 0 2 2 2 2 Penicillin binding protein transpeptidase domain PCB_OB PF17092.5 AJD69978.1 - 8.9e-10 39.3 0.1 2.7e-09 37.8 0.1 1.8 1 0 0 1 1 1 1 Penicillin-binding protein OB-like domain Glyoxalase_3 PF13468.6 AJD69979.1 - 0.024 14.7 0.6 0.037 14.1 0.2 1.5 1 1 0 1 1 1 0 Glyoxalase-like domain Citrate_synt PF00285.21 AJD69981.1 - 4.1e-136 453.8 0.1 4.8e-136 453.6 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Ribosomal_L31 PF01197.18 AJD69982.1 - 1e-28 99.4 0.9 1.2e-28 99.1 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L31 IU_nuc_hydro PF01156.19 AJD69983.1 - 3.2e-79 266.7 0.0 3.8e-79 266.4 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Helicase_C PF00271.31 AJD69984.1 - 8.6e-21 74.4 0.0 6.8e-17 61.8 0.0 3.0 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DEAD PF00270.29 AJD69984.1 - 1.4e-15 57.5 0.5 4.6e-15 55.8 0.1 2.1 2 1 1 3 3 3 1 DEAD/DEAH box helicase RecG_wedge PF17191.4 AJD69984.1 - 4.1e-11 42.8 0.0 6.3e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 RecG wedge domain ResIII PF04851.15 AJD69984.1 - 4.6e-07 30.0 0.0 7.9e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit tRNA_anti-codon PF01336.25 AJD69984.1 - 4.6e-06 26.5 0.1 1.1e-05 25.3 0.0 1.7 2 0 0 2 2 1 1 OB-fold nucleic acid binding domain HHH_5 PF14520.6 AJD69984.1 - 8.9e-06 26.2 0.1 0.0018 18.9 0.0 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 AJD69984.1 - 0.00014 21.6 1.5 0.017 14.9 0.0 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif AAA_30 PF13604.6 AJD69984.1 - 0.00087 19.1 8.0 0.0011 18.7 5.9 2.3 2 1 0 2 2 2 1 AAA domain IMS_HHH PF11798.8 AJD69984.1 - 0.0021 18.3 0.3 0.33 11.4 0.0 3.0 3 0 0 3 3 3 1 IMS family HHH motif SecA_DEAD PF07517.14 AJD69984.1 - 0.0022 17.3 0.0 0.004 16.5 0.0 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain DNA_pol_lambd_f PF10391.9 AJD69984.1 - 0.0072 16.1 0.0 0.036 13.9 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.23 AJD69984.1 - 0.014 14.1 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.6 AJD69984.1 - 0.016 15.4 0.1 1.4 9.2 0.1 2.8 2 1 0 2 2 2 0 AAA domain Cdd1 PF11731.8 AJD69984.1 - 0.018 15.2 0.0 0.092 13.0 0.0 2.1 2 0 0 2 2 2 0 Pathogenicity locus T2SSE PF00437.20 AJD69984.1 - 0.052 12.6 0.0 0.094 11.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Glyco_tran_WecB PF03808.13 AJD69984.1 - 0.058 13.3 0.8 18 5.2 0.0 3.0 2 1 1 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family PIF1 PF05970.14 AJD69984.1 - 0.081 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Helicase_RecD PF05127.14 AJD69984.1 - 0.14 12.0 0.9 0.32 10.8 0.1 2.0 3 0 0 3 3 2 0 Helicase Ribonuc_L-PSP PF01042.21 AJD69985.1 - 8.9e-41 138.7 0.0 9.9e-41 138.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 AJD69985.1 - 0.089 12.9 0.4 0.24 11.5 0.4 1.8 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease SepF PF04472.12 AJD69985.1 - 0.12 12.7 0.0 0.29 11.5 0.0 1.6 2 0 0 2 2 2 0 Cell division protein SepF HD_4 PF13328.6 AJD69986.1 - 2.4e-51 173.6 2.0 2.4e-51 173.6 2.0 1.8 2 0 0 2 2 2 1 HD domain RelA_SpoT PF04607.17 AJD69986.1 - 7.1e-33 113.4 0.0 1.6e-32 112.3 0.0 1.6 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins TGS PF02824.21 AJD69986.1 - 1.6e-16 60.1 0.2 5.6e-16 58.3 0.0 2.0 2 0 0 2 2 2 1 TGS domain ACT_4 PF13291.6 AJD69986.1 - 3.5e-16 59.6 1.6 7.7e-16 58.5 1.6 1.5 1 0 0 1 1 1 1 ACT domain HD PF01966.22 AJD69986.1 - 3e-11 43.6 0.7 7.2e-11 42.4 0.7 1.7 1 0 0 1 1 1 1 HD domain ACT PF01842.25 AJD69986.1 - 6.5e-05 22.6 0.6 0.0016 18.2 0.2 2.9 2 1 0 2 2 2 1 ACT domain Vps23_core PF09454.10 AJD69986.1 - 0.073 13.0 0.1 3.7 7.6 0.2 2.9 2 0 0 2 2 2 0 Vps23 core domain RNA_pol_Rpb6 PF01192.22 AJD69987.1 - 5.1e-16 58.3 1.3 8.5e-16 57.6 0.1 1.8 1 1 1 2 2 2 1 RNA polymerase Rpb6 FANCI_S2 PF14676.6 AJD69987.1 - 0.054 13.8 0.0 0.067 13.5 0.0 1.1 1 0 0 1 1 1 0 FANCI solenoid 2 Guanylate_kin PF00625.21 AJD69988.1 - 1.8e-46 158.1 0.0 2.1e-46 157.9 0.0 1.0 1 0 0 1 1 1 1 Guanylate kinase RsgA_GTPase PF03193.16 AJD69988.1 - 0.041 13.8 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF1732 PF08340.11 AJD69989.1 - 2.3e-35 120.4 0.9 5.4e-35 119.3 0.9 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1732) YicC_N PF03755.13 AJD69989.1 - 2.6e-34 118.9 0.0 6.2e-34 117.6 0.0 1.6 2 0 0 2 2 2 1 YicC-like family, N-terminal region RNase_PH PF01138.21 AJD69990.1 - 1.3e-22 80.7 0.0 2.1e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 AJD69990.1 - 1.2e-09 38.1 0.0 1.8e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Glyoxalase PF00903.25 AJD69991.1 - 6.5e-10 39.3 0.0 7.8e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD69991.1 - 0.0036 18.1 0.2 0.0045 17.8 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 AJD69991.1 - 0.0054 17.0 0.0 0.0073 16.6 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ham1p_like PF01725.16 AJD69992.1 - 1.9e-56 191.0 0.0 2.1e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Radical_SAM PF04055.21 AJD69993.1 - 3.3e-20 73.1 0.0 5.2e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 AJD69993.1 - 5.9e-09 35.9 0.0 1.5e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 HemN C-terminal domain MarR_2 PF12802.7 AJD69993.1 - 0.073 13.0 0.1 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF1631 PF07793.11 AJD69994.1 - 3.6e-197 657.2 37.2 4.1e-197 657.0 37.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1631) PilZ PF07238.14 AJD69995.1 - 9.3e-08 32.3 0.0 1.1e-07 32.2 0.0 1.0 1 0 0 1 1 1 1 PilZ domain Peptidase_M24 PF00557.24 AJD69996.1 - 3.8e-42 144.4 0.1 4.9e-42 144.0 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF3793 PF12672.7 AJD69996.1 - 0.055 13.5 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3793) Peptidase_M24 PF00557.24 AJD69998.1 - 5.4e-62 209.2 0.2 7.3e-62 208.8 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 AMP_N PF05195.16 AJD69998.1 - 2.5e-39 133.8 0.0 5.6e-39 132.7 0.0 1.6 1 0 0 1 1 1 1 Aminopeptidase P, N-terminal domain UPF0149 PF03695.13 AJD69999.1 - 4.4e-28 98.7 6.5 5.5e-28 98.4 6.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0149) ZapB PF06005.12 AJD70000.1 - 6.2e-06 26.6 8.5 7.8e-06 26.2 8.5 1.1 1 0 0 1 1 1 1 Cell division protein ZapB Herpes_BLRF2 PF05812.12 AJD70000.1 - 0.00077 19.6 2.0 0.001 19.2 2.0 1.2 1 0 0 1 1 1 1 Herpesvirus BLRF2 protein bZIP_1 PF00170.21 AJD70000.1 - 0.0012 18.9 2.9 0.0016 18.5 1.4 1.9 1 1 1 2 2 2 2 bZIP transcription factor Taxilin PF09728.9 AJD70000.1 - 0.0037 16.5 4.3 0.0042 16.3 4.3 1.0 1 0 0 1 1 1 1 Myosin-like coiled-coil protein YabA PF06156.13 AJD70000.1 - 0.0041 17.7 3.0 0.006 17.2 3.0 1.4 1 1 0 1 1 1 1 Initiation control protein YabA T3SSipB PF16535.5 AJD70000.1 - 0.0075 16.8 3.2 0.008 16.7 3.2 1.0 1 0 0 1 1 1 1 Type III cell invasion protein SipB NRBF2 PF08961.10 AJD70000.1 - 0.024 14.3 2.9 0.035 13.7 2.9 1.5 1 1 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator JIP_LZII PF16471.5 AJD70000.1 - 0.035 14.3 5.5 0.067 13.4 2.9 2.0 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II SKA2 PF16740.5 AJD70000.1 - 0.077 12.8 4.3 0.086 12.6 4.3 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 APG6_N PF17675.1 AJD70000.1 - 0.14 12.7 7.0 0.18 12.3 7.0 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region bZIP_2 PF07716.15 AJD70000.1 - 0.17 12.0 9.8 0.21 11.7 2.3 2.6 1 1 2 3 3 3 0 Basic region leucine zipper DUF3450 PF11932.8 AJD70000.1 - 0.17 11.2 7.1 0.2 11.0 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) LPP20 PF02169.16 AJD70000.1 - 0.18 12.1 2.0 0.2 12.0 2.0 1.1 1 0 0 1 1 1 0 LPP20 lipoprotein DUF2937 PF11157.8 AJD70000.1 - 0.2 11.3 2.8 0.26 11.0 0.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) DivIC PF04977.15 AJD70000.1 - 0.45 10.3 7.7 0.27 11.0 2.0 2.0 1 1 1 2 2 2 0 Septum formation initiator CENP-H PF05837.12 AJD70000.1 - 0.48 10.9 7.1 0.52 10.7 7.1 1.0 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF2203 PF09969.9 AJD70000.1 - 0.54 11.0 4.1 0.65 10.7 4.1 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF2968 PF11180.8 AJD70000.1 - 0.83 9.3 11.1 0.87 9.2 11.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF4407 PF14362.6 AJD70000.1 - 2.4 7.4 7.8 2.7 7.2 7.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ZapA PF05164.13 AJD70001.1 - 3.2e-20 72.4 3.6 3.7e-20 72.2 3.6 1.0 1 0 0 1 1 1 1 Cell division protein ZapA 5-FTHF_cyc-lig PF01812.20 AJD70002.1 - 2.2e-30 105.9 0.0 2.4e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family EVE PF01878.18 AJD70003.1 - 7.1e-55 185.0 0.0 7.9e-55 184.9 0.0 1.0 1 0 0 1 1 1 1 EVE domain Rib_5-P_isom_A PF06026.14 AJD70004.1 - 2.1e-57 193.5 0.0 2.8e-57 193.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 AJD70004.1 - 2.7e-05 24.1 0.0 0.00019 21.4 0.0 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 AJD70004.1 - 0.019 14.1 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain CoA_trans PF01144.23 AJD70004.1 - 0.065 12.6 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase DUF192 PF02643.15 AJD70005.1 - 3.1e-31 107.4 0.0 3.6e-31 107.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Transglut_core2 PF13369.6 AJD70006.1 - 4.4e-44 149.8 0.0 6.6e-44 149.2 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily TPR_9 PF13371.6 AJD70006.1 - 8.2e-19 67.5 3.9 8.2e-19 67.5 3.9 1.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 AJD70006.1 - 1.9e-06 27.5 0.2 0.0022 17.9 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 AJD70006.1 - 1e-05 26.1 5.7 1.3e-05 25.7 2.8 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 AJD70006.1 - 0.00024 21.7 3.8 0.042 14.7 0.9 3.2 1 1 1 2 2 2 2 Tetratricopeptide repeat Transglut_core PF01841.19 AJD70006.1 - 0.0036 17.7 0.0 0.006 17.0 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily TPR_19 PF14559.6 AJD70006.1 - 0.03 14.8 3.5 0.06 13.9 1.2 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 AJD70006.1 - 0.062 13.1 0.0 0.69 9.8 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Rubredoxin PF00301.20 AJD70007.1 - 5.2e-21 74.4 4.2 6.6e-21 74.1 4.2 1.1 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 AJD70007.1 - 0.0015 18.6 0.1 0.0022 18.0 0.1 1.3 1 0 0 1 1 1 1 PHD-finger zf-Sec23_Sec24 PF04810.15 AJD70007.1 - 0.0023 17.9 0.5 1.6 8.8 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.11 AJD70007.1 - 0.0025 17.7 0.1 2.5 8.1 0.0 2.1 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_10 PF10058.9 AJD70007.1 - 0.0033 17.1 0.3 1.4 8.7 0.0 2.2 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein Vps36-NZF-N PF16988.5 AJD70007.1 - 0.0034 16.7 1.9 0.71 9.3 0.1 2.2 2 0 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain ADK_lid PF05191.14 AJD70007.1 - 0.013 15.5 0.7 2.2 8.3 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_3 PF13878.6 AJD70007.1 - 0.017 15.0 0.3 1.2 9.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1595 PF12760.7 AJD70007.1 - 0.044 13.8 1.1 1 9.4 0.2 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RbpA PF13397.6 AJD70007.1 - 0.074 13.7 1.1 0.79 10.4 0.3 2.0 1 1 1 2 2 2 0 RNA polymerase-binding protein zf_C2H2_ZHX PF18387.1 AJD70007.1 - 0.084 12.5 0.1 6.5 6.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-fingers and homeoboxes C2H2 finger domain Rubredoxin_2 PF18073.1 AJD70007.1 - 0.13 12.0 2.9 8 6.3 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 AJD70007.1 - 0.28 11.1 4.0 1.7 8.6 0.3 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-RanBP PF00641.18 AJD70007.1 - 0.41 10.0 4.5 1.4 8.3 0.9 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HalOD2 PF18547.1 AJD70007.1 - 0.46 10.4 5.2 4 7.4 0.9 2.3 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-MIZ PF02891.20 AJD70007.1 - 0.82 9.5 4.3 11 5.9 0.1 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger TMP-TENI PF02581.17 AJD70008.1 - 1.7e-52 177.4 0.7 1.9e-52 177.2 0.7 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase Poxvirus_B22R_C PF13168.6 AJD70008.1 - 0.011 15.2 0.1 0.017 14.6 0.1 1.2 1 0 0 1 1 1 0 Poxvirus B22R protein C-terminal OMPdecase PF00215.24 AJD70008.1 - 0.023 14.3 0.1 0.031 13.9 0.1 1.3 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TGT PF01702.18 AJD70008.1 - 0.24 10.5 0.0 0.38 9.9 0.0 1.3 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase Plug PF07715.15 AJD70009.1 - 4.3e-10 40.1 3.1 1.7e-09 38.2 3.1 2.1 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain CarboxypepD_reg PF13620.6 AJD70010.1 - 0.0054 17.0 1.2 0.0067 16.7 1.0 1.4 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Aminotran_3 PF00202.21 AJD70011.1 - 2.8e-78 263.4 0.1 3.6e-78 263.0 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AJD70011.1 - 0.00038 19.7 0.0 0.00058 19.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GerE PF00196.19 AJD70012.1 - 2.8e-19 68.4 0.0 5.7e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TPR_MalT PF17874.1 AJD70012.1 - 2.4e-12 46.9 23.2 2.4e-12 46.9 23.2 2.7 3 0 0 3 3 3 1 MalT-like TPR region TPR_12 PF13424.6 AJD70012.1 - 7.8e-09 35.7 5.1 7.8e-09 35.7 5.1 6.7 6 2 0 6 6 5 1 Tetratricopeptide repeat TPR_1 PF00515.28 AJD70012.1 - 1.8e-07 30.7 3.5 0.002 17.9 0.1 4.2 3 0 0 3 3 3 1 Tetratricopeptide repeat AAA_25 PF13481.6 AJD70012.1 - 1.3e-06 28.1 0.1 1.3e-06 28.1 0.1 2.6 3 0 0 3 3 3 1 AAA domain TPR_2 PF07719.17 AJD70012.1 - 2.9e-06 26.9 11.7 0.0024 17.9 0.1 5.3 5 0 0 5 5 3 2 Tetratricopeptide repeat AAA_16 PF13191.6 AJD70012.1 - 1.2e-05 25.8 2.5 1.2e-05 25.8 2.5 3.9 4 1 0 4 4 4 1 AAA ATPase domain HTH_23 PF13384.6 AJD70012.1 - 2.5e-05 24.0 0.8 0.00019 21.1 0.1 2.9 2 0 0 2 2 2 1 Homeodomain-like domain AAA_22 PF13401.6 AJD70012.1 - 0.00011 22.4 0.1 0.00077 19.8 0.0 2.5 2 0 0 2 2 1 1 AAA domain TPR_16 PF13432.6 AJD70012.1 - 0.00021 21.9 3.4 0.00021 21.9 3.4 7.4 5 2 2 7 7 6 2 Tetratricopeptide repeat Sigma70_r4_2 PF08281.12 AJD70012.1 - 0.00034 20.2 0.0 0.0015 18.1 0.0 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AJD70012.1 - 0.00042 19.7 0.1 0.13 11.7 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 AAA_30 PF13604.6 AJD70012.1 - 0.0064 16.2 0.1 0.031 14.0 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.6 AJD70012.1 - 0.008 16.5 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain TPR_7 PF13176.6 AJD70012.1 - 0.0085 16.0 11.3 1.7 8.8 0.1 6.1 5 0 0 5 5 4 1 Tetratricopeptide repeat HTH_20 PF12840.7 AJD70012.1 - 0.0092 16.0 0.1 0.0092 16.0 0.1 3.5 4 1 0 4 4 2 1 Helix-turn-helix domain NACHT PF05729.12 AJD70012.1 - 0.012 15.5 0.2 0.042 13.8 0.2 1.9 1 1 0 1 1 1 0 NACHT domain HTH_38 PF13936.6 AJD70012.1 - 0.023 14.4 0.0 0.29 10.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 AJD70012.1 - 0.033 13.8 0.1 0.083 12.5 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 AJD70012.1 - 0.033 14.3 0.6 1.3 9.2 0.0 3.9 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_5 PF01022.20 AJD70012.1 - 0.036 13.9 0.0 0.39 10.6 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TPR_11 PF13414.6 AJD70012.1 - 0.04 13.6 0.0 0.27 10.9 0.0 2.5 2 0 0 2 2 2 0 TPR repeat Hit1_C PF18268.1 AJD70012.1 - 0.04 14.0 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 Hit1 C-terminal TPR_10 PF13374.6 AJD70012.1 - 0.055 13.4 0.1 0.055 13.4 0.1 6.1 7 0 0 7 7 5 0 Tetratricopeptide repeat HTH_IclR PF09339.10 AJD70012.1 - 0.055 13.3 1.6 8.7 6.2 0.0 4.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain TPR_8 PF13181.6 AJD70012.1 - 0.057 13.7 2.6 0.3 11.4 0.1 3.6 4 0 0 4 4 3 0 Tetratricopeptide repeat AAA_11 PF13086.6 AJD70012.1 - 0.062 13.1 0.0 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain ANAPC3 PF12895.7 AJD70012.1 - 0.96 9.7 10.7 0.063 13.5 0.7 4.0 5 1 0 5 5 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Copper-bind PF00127.20 AJD70013.1 - 3.3e-20 72.4 0.1 3.9e-20 72.1 0.1 1.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family MCR_beta_N PF02783.15 AJD70013.1 - 0.13 11.9 0.0 0.21 11.2 0.0 1.4 1 1 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Aminotran_1_2 PF00155.21 AJD70014.1 - 5.5e-39 134.4 0.0 6.7e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 AJD70014.1 - 0.0021 17.0 0.1 0.0043 16.0 0.0 1.5 2 0 0 2 2 2 1 Allinase DUF4350 PF14258.6 AJD70014.1 - 0.0099 16.3 0.1 0.046 14.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Ribonuc_L-PSP PF01042.21 AJD70015.1 - 1.9e-16 60.2 0.2 4.9e-16 58.8 0.1 1.6 1 1 1 2 2 2 1 Endoribonuclease L-PSP Cytochrome_CBB3 PF13442.6 AJD70016.1 - 4.1e-12 46.2 0.3 5.5e-12 45.8 0.3 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AJD70016.1 - 1.3e-07 32.7 0.9 1.1e-05 26.5 0.9 2.2 1 1 0 1 1 1 1 Cytochrome c Defensin_5 PF18251.1 AJD70016.1 - 0.06 13.4 0.2 0.099 12.7 0.2 1.3 1 0 0 1 1 1 0 Fungal defensin Copsin Amino_oxidase PF01593.24 AJD70017.1 - 6.1e-64 217.0 1.0 2.4e-63 215.0 1.0 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 AJD70017.1 - 3.7e-10 39.9 0.3 1.4e-09 38.1 0.3 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 AJD70017.1 - 9.4e-06 25.0 0.1 2e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 AJD70017.1 - 1.1e-05 24.9 0.0 4e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AJD70017.1 - 2.5e-05 23.7 0.1 0.00034 20.0 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 AJD70017.1 - 2.7e-05 24.6 0.0 0.0042 17.6 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD70017.1 - 4.3e-05 23.3 0.9 0.00053 19.7 0.2 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AJD70017.1 - 4.5e-05 22.3 0.0 7.3e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 AJD70017.1 - 0.00051 19.2 0.0 0.00094 18.4 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 AJD70017.1 - 0.00067 19.0 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 AJD70017.1 - 0.0025 17.2 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 AJD70017.1 - 0.0045 16.3 0.0 0.03 13.6 0.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 AJD70017.1 - 0.13 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 AJD70017.1 - 0.22 10.7 0.0 0.85 8.8 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TonB_dep_Rec PF00593.24 AJD70018.1 - 3.7e-40 139.2 31.7 3.7e-40 139.2 31.7 1.6 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD70018.1 - 1.8e-10 41.3 1.2 4.2e-10 40.2 1.2 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70018.1 - 1.6e-08 33.9 0.1 5.8e-08 32.1 0.0 2.0 2 1 0 2 2 2 1 Outer membrane protein beta-barrel family HAD_2 PF13419.6 AJD70019.1 - 1.9e-05 24.8 0.0 7e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD70019.1 - 0.005 17.2 0.0 0.04 14.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD70019.1 - 0.01 15.8 0.0 0.028 14.5 0.0 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like Aminotran_3 PF00202.21 AJD70020.1 - 1.4e-115 386.2 0.0 1.9e-115 385.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AJD70020.1 - 0.0023 17.1 0.0 0.0029 16.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Ion_trans PF00520.31 AJD70021.1 - 4.7e-31 107.9 11.3 6.1e-31 107.5 11.3 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 AJD70021.1 - 2.7e-14 52.9 13.9 1.6e-13 50.4 8.8 2.5 2 0 0 2 2 2 2 Ion channel DZR PF12773.7 AJD70021.1 - 0.16 12.0 1.8 0.47 10.5 1.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon PKD_channel PF08016.12 AJD70021.1 - 0.24 10.0 6.9 0.15 10.7 1.5 2.1 1 1 1 2 2 2 0 Polycystin cation channel SLC3A2_N PF16028.5 AJD70021.1 - 9.8 5.8 8.3 0.35 10.5 0.3 2.4 2 1 0 2 2 2 0 Solute carrier family 3 member 2 N-terminus adh_short PF00106.25 AJD70022.1 - 1.1e-31 109.8 0.1 1.5e-31 109.4 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD70022.1 - 4.8e-31 108.1 2.2 6.6e-31 107.7 2.2 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD70022.1 - 0.00088 19.2 0.4 0.0012 18.8 0.4 1.2 1 0 0 1 1 1 1 KR domain YjeF_N PF03853.15 AJD70022.1 - 0.021 14.7 0.4 0.04 13.8 0.4 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus Kdo PF06293.14 AJD70023.1 - 0.00092 18.6 0.1 0.0013 18.1 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 AJD70023.1 - 0.0012 18.3 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain SNARE_assoc PF09335.11 AJD70024.1 - 5.8e-19 68.7 5.9 5.8e-19 68.7 5.9 4.4 2 2 2 4 4 4 1 SNARE associated Golgi protein PAP2 PF01569.21 AJD70024.1 - 7.1e-11 42.0 8.4 7.1e-11 42.0 8.4 3.7 2 1 1 3 3 3 2 PAP2 superfamily LssY_C PF14067.6 AJD70024.1 - 1.4e-09 37.7 0.4 2.1e-09 37.2 0.4 1.2 1 0 0 1 1 1 1 LssY C-terminus Bestrophin PF01062.21 AJD70025.1 - 3e-39 135.2 0.3 3.8e-39 134.8 0.3 1.0 1 0 0 1 1 1 1 Bestrophin, RFP-TM, chloride channel DUF2628 PF10947.8 AJD70025.1 - 0.015 15.6 2.3 0.022 15.1 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) LON_substr_bdg PF02190.16 AJD70026.1 - 6.8e-16 58.8 0.0 7.9e-15 55.3 0.0 1.9 1 1 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain Mur_ligase_M PF08245.12 AJD70027.1 - 5.5e-25 88.5 0.0 7.6e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AJD70027.1 - 3.8e-11 43.1 0.6 2.7e-10 40.4 0.2 2.4 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 AJD70027.1 - 1.6e-10 41.2 0.0 6.3e-10 39.2 0.0 2.1 1 0 0 1 1 1 1 Mur ligase family, catalytic domain ADK PF00406.22 AJD70028.1 - 3.2e-56 189.6 0.0 3.8e-56 189.4 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 AJD70028.1 - 8.4e-32 110.4 0.0 1.1e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD70028.1 - 1.5e-06 28.5 0.0 2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AJD70028.1 - 5.3e-06 27.0 0.0 8.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 AJD70028.1 - 0.042 13.6 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase Hydin_ADK PF17213.3 AJD70028.1 - 0.049 13.9 0.0 1.5 9.0 0.0 2.2 1 1 1 2 2 2 0 Hydin Adenylate kinase-like domain Mg_chelatase PF01078.21 AJD70028.1 - 0.064 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Thymidylate_kin PF02223.17 AJD70028.1 - 0.097 12.3 0.0 9.2 5.9 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.6 AJD70028.1 - 0.19 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain PFK PF00365.20 AJD70029.1 - 6.6e-50 170.0 0.1 9.5e-50 169.5 0.1 1.2 1 0 0 1 1 1 1 Phosphofructokinase H_PPase PF03030.16 AJD70031.1 - 2.3e-269 895.5 41.2 2.7e-269 895.3 41.2 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DUF3464 PF11947.8 AJD70031.1 - 0.49 10.1 3.3 0.6 9.9 0.0 2.4 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 Pyrophosphatase PF00719.19 AJD70033.1 - 2.5e-53 180.2 0.0 2.8e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase HDOD PF08668.12 AJD70034.1 - 1.6e-29 102.8 1.2 1.1e-27 96.8 1.2 2.2 1 1 0 1 1 1 1 HDOD domain Response_reg PF00072.24 AJD70034.1 - 0.036 14.2 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Response regulator receiver domain Metal_CEHH PF14455.6 AJD70034.1 - 0.19 11.3 0.2 2.4 7.7 0.0 2.1 1 1 1 2 2 2 0 Predicted metal binding domain TonB_dep_Rec PF00593.24 AJD70035.1 - 3.7e-50 172.2 33.8 2.5e-49 169.4 19.8 2.2 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70035.1 - 2.4e-24 86.0 1.5 5e-24 84.9 1.5 1.6 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain HTH_18 PF12833.7 AJD70036.1 - 9.6e-18 64.2 0.7 9.6e-18 64.2 0.7 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD70036.1 - 6.5e-08 32.5 0.2 0.0038 17.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding_2 PF14525.6 AJD70036.1 - 9.1e-06 25.5 3.8 2.2e-05 24.2 3.8 1.6 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 AJD70036.1 - 0.011 15.7 0.0 0.024 14.5 0.0 1.7 1 1 0 1 1 1 0 AraC-like ligand binding domain PD40 PF07676.12 AJD70037.1 - 4e-20 71.2 11.9 5.7e-08 32.5 0.3 4.9 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 AJD70037.1 - 0.0058 15.4 0.0 0.51 9.0 0.0 3.3 2 1 1 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region ANAPC4_WD40 PF12894.7 AJD70037.1 - 0.047 14.0 0.0 51 4.3 0.0 3.5 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Trans_reg_C PF00486.28 AJD70038.1 - 7.3e-18 64.4 0.0 1.1e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal PD40 PF07676.12 AJD70038.1 - 1.2e-12 47.4 0.2 1.8e-07 30.9 0.0 2.4 2 0 0 2 2 2 2 WD40-like Beta Propeller Repeat PrgH PF09480.10 AJD70038.1 - 0.031 13.6 0.0 0.041 13.2 0.0 1.1 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) ThiC_Rad_SAM PF01964.18 AJD70039.1 - 1.3e-199 663.3 0.0 1.5e-199 663.1 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family ThiC-associated PF13667.6 AJD70039.1 - 5.5e-30 103.0 0.0 1.1e-29 102.0 0.0 1.5 1 0 0 1 1 1 1 ThiC-associated domain TonB_dep_Rec PF00593.24 AJD70040.1 - 2.9e-41 142.8 51.8 2.9e-41 142.8 51.8 2.2 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70040.1 - 5.9e-28 97.6 3.2 5.9e-28 97.6 3.2 2.4 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain DUF4875 PF16175.5 AJD70040.1 - 0.078 13.1 1.3 0.14 12.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4875) StbA PF06406.11 AJD70040.1 - 0.12 11.6 0.1 0.12 11.6 0.1 1.6 2 0 0 2 2 2 0 StbA protein MCPsignal PF00015.21 AJD70041.1 - 9.2e-29 100.4 17.6 9.2e-29 100.4 17.6 2.2 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Serine_rich PF08824.10 AJD70041.1 - 0.076 13.0 1.2 0.2 11.6 0.8 1.9 2 0 0 2 2 2 0 Serine rich protein interaction domain DUF948 PF06103.11 AJD70041.1 - 0.079 13.2 1.7 3 8.2 0.3 2.8 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) PAS_4 PF08448.10 AJD70041.1 - 0.52 10.6 5.3 1.3 9.3 0.1 3.7 4 1 1 5 5 5 0 PAS fold DUF745 PF05335.13 AJD70041.1 - 0.65 9.7 24.8 0.11 12.3 8.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF745) G_glu_transpept PF01019.21 AJD70042.1 - 2.1e-160 534.9 0.0 2.4e-160 534.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase IlvN PF07991.12 AJD70043.1 - 7.6e-70 233.8 0.1 1.1e-69 233.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 AJD70043.1 - 1.1e-61 207.3 0.0 1.7e-61 206.8 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 AJD70043.1 - 6.3e-06 26.7 0.0 1.4e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 AJD70043.1 - 1.6e-05 25.2 0.0 3.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 AJD70043.1 - 7e-05 22.2 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 AJD70043.1 - 0.00063 19.4 0.1 0.0013 18.3 0.1 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 AJD70043.1 - 0.014 15.5 0.0 0.034 14.2 0.0 1.6 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 AJD70043.1 - 0.089 13.6 0.0 0.2 12.5 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TPP_enzyme_N PF02776.18 AJD70044.1 - 4.1e-58 195.8 0.1 1.4e-57 194.1 0.1 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 AJD70044.1 - 1.5e-48 164.4 0.0 1.5e-47 161.2 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 AJD70044.1 - 9.6e-45 151.7 0.2 2.1e-44 150.6 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 AJD70044.1 - 0.018 14.8 0.2 0.087 12.6 0.1 1.9 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DUF953 PF06110.11 AJD70044.1 - 0.22 11.1 0.0 0.59 9.8 0.0 1.6 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) ACT_5 PF13710.6 AJD70045.1 - 2.5e-18 65.7 0.0 3.1e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 ACT domain PALP PF00291.25 AJD70046.1 - 3.6e-72 243.2 3.9 4.6e-72 242.9 3.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HMGL-like PF00682.19 AJD70047.1 - 1.9e-91 306.3 0.8 3.4e-91 305.4 0.8 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 AJD70047.1 - 2.4e-30 105.2 0.6 4.3e-30 104.3 0.6 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF561 PF04481.12 AJD70047.1 - 0.13 11.4 0.1 21 4.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF561) Iso_dh PF00180.20 AJD70048.1 - 1.1e-134 449.0 0.0 1.3e-134 448.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 AJD70049.1 - 3.3e-38 131.0 0.0 4.3e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 AJD70050.1 - 4.4e-159 530.4 0.1 5e-159 530.2 0.1 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) LysR_substrate PF03466.20 AJD70051.1 - 6.1e-43 146.6 11.2 1e-42 145.9 11.2 1.4 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70051.1 - 2.5e-21 75.4 2.5 2.5e-21 75.4 2.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.6 AJD70051.1 - 0.02 14.7 0.8 0.24 11.3 0.0 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 AJD70051.1 - 0.036 14.0 0.9 0.24 11.3 0.1 2.7 2 1 0 2 2 2 0 MarR family Reg_prop PF07494.11 AJD70052.1 - 2.7e-39 128.2 15.6 0.0055 16.8 0.1 13.9 14 0 0 14 14 14 10 Two component regulator propeller GGDEF PF00990.21 AJD70052.1 - 8.7e-36 123.1 0.4 1.5e-35 122.3 0.4 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Y_Y_Y PF07495.13 AJD70052.1 - 2.2e-17 62.8 0.0 5e-17 61.6 0.0 1.6 2 0 0 2 2 2 1 Y_Y_Y domain SGL PF08450.12 AJD70052.1 - 0.0021 17.7 3.3 12 5.3 0.0 5.1 5 0 0 5 5 5 2 SMP-30/Gluconolactonase/LRE-like region DUF5074 PF16819.5 AJD70052.1 - 0.071 13.2 0.0 75 3.4 0.0 4.5 4 0 0 4 4 4 0 Domain of unknown function (DUF5074) TetR_C_7 PF14246.6 AJD70053.1 - 9.8e-34 115.9 0.3 1.7e-33 115.1 0.3 1.4 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 AJD70053.1 - 1.9e-16 59.6 0.9 5.1e-16 58.2 0.2 2.1 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 AJD70053.1 - 0.0014 18.9 0.4 0.0021 18.3 0.4 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 AJD70053.1 - 0.05 13.4 0.8 0.22 11.3 0.1 2.4 2 1 0 2 2 2 0 Bacterial regulatory proteins, lacI family GerE PF00196.19 AJD70053.1 - 0.19 11.3 0.0 0.43 10.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PCMT PF01135.19 AJD70054.1 - 4.5e-32 111.5 0.0 5.5e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 AJD70054.1 - 7.9e-10 38.2 0.0 1.2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 AJD70054.1 - 3.3e-08 34.1 0.0 7.2e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD70054.1 - 9.4e-07 28.7 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD70054.1 - 1.8e-06 28.5 0.0 5.4e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 AJD70054.1 - 8e-06 25.3 0.0 1.1e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 AJD70054.1 - 0.00012 22.8 0.0 0.0024 18.6 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 AJD70054.1 - 0.00017 21.2 0.0 0.0011 18.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 AJD70054.1 - 0.00018 21.4 0.0 0.00027 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 AJD70054.1 - 0.00024 20.6 0.0 0.00031 20.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 AJD70054.1 - 0.0014 18.3 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_24 PF13578.6 AJD70054.1 - 0.0036 18.3 0.2 0.0088 17.1 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 AJD70054.1 - 0.0043 16.8 0.0 0.0097 15.6 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.7 AJD70054.1 - 0.031 14.2 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 AJD70054.1 - 0.17 11.5 0.0 0.34 10.5 0.0 1.5 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F tRNA_U5-meth_tr PF05958.11 AJD70054.1 - 0.19 10.7 0.0 0.26 10.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase OEP PF02321.18 AJD70055.1 - 2.3e-59 200.4 37.9 1.8e-34 119.2 14.6 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein Glycos_transf_N PF04413.16 AJD70056.1 - 1.2e-67 227.0 0.0 3.7e-66 222.1 0.0 2.1 2 0 0 2 2 2 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_trans_1_2 PF13524.6 AJD70056.1 - 1.4e-05 25.4 0.0 3.1e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 AJD70056.1 - 0.027 14.0 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 Lip_A_acyltrans PF03279.13 AJD70057.1 - 3.3e-69 233.3 0.0 3.9e-69 233.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase Luteo_PO PF04662.13 AJD70057.1 - 0.04 13.6 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 Luteovirus P0 protein Wzy_C PF04932.15 AJD70058.1 - 1.8e-22 79.6 1.0 1.8e-22 79.6 1.0 2.2 3 1 0 3 3 3 1 O-Antigen ligase PT-TG PF14449.6 AJD70058.1 - 0.087 12.7 0.1 0.48 10.3 0.0 2.3 2 0 0 2 2 2 0 Pre-toxin TG Glyco_transf_4 PF13439.6 AJD70059.1 - 1.8e-23 83.4 2.0 1.8e-23 83.4 2.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 AJD70059.1 - 1.2e-14 54.3 0.0 1.8e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AJD70059.1 - 1.4e-10 41.7 0.2 2.3e-10 41.0 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AJD70059.1 - 2.6e-09 37.7 29.2 2.4e-08 34.6 24.2 3.1 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 AJD70059.1 - 4e-05 23.7 0.0 6.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like AA_kinase PF00696.28 AJD70059.1 - 0.088 12.4 0.2 0.15 11.6 0.2 1.3 1 0 0 1 1 1 0 Amino acid kinase family zf-CHCC PF10276.9 AJD70060.1 - 2.5e-08 33.8 0.2 3.2e-08 33.5 0.2 1.2 1 0 0 1 1 1 1 Zinc-finger domain zf-ribbon_3 PF13248.6 AJD70060.1 - 0.049 13.1 0.1 0.049 13.1 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 AJD70060.1 - 0.055 13.0 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 AJD70060.1 - 0.097 12.9 0.2 0.22 11.8 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon Glyco_hydro_92 PF07971.12 AJD70061.1 - 4e-141 471.1 3.6 5.6e-141 470.6 3.6 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 Glyco_hydro_92N PF17678.1 AJD70061.1 - 7.8e-39 134.0 0.1 1.4e-38 133.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 N-terminal domain Desulfoferrodox PF01880.18 AJD70061.1 - 0.01 16.4 0.1 0.022 15.4 0.1 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin PTA_PTB PF01515.19 AJD70062.1 - 1.1e-90 304.3 0.0 1.5e-90 303.8 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 AJD70062.1 - 1.8e-28 99.6 0.2 3.2e-26 92.2 0.2 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 AJD70062.1 - 4.1e-21 75.4 0.9 2.7e-20 72.7 0.9 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain SDF PF00375.18 AJD70063.1 - 3.9e-101 338.9 33.0 4.4e-101 338.7 33.0 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF4658 PF15555.6 AJD70063.1 - 0.13 12.4 0.1 0.13 12.4 0.1 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4658) Porin_O_P PF07396.11 AJD70064.1 - 1.7e-96 323.5 3.1 2e-96 323.3 3.1 1.0 1 0 0 1 1 1 1 Phosphate-selective porin O and P PAS_7 PF12860.7 AJD70065.1 - 1.4e-40 138.0 0.0 5.4e-40 136.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 AJD70065.1 - 7.6e-19 68.3 0.0 1.4e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD70065.1 - 1.7e-17 63.6 0.0 5.8e-17 61.9 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain dCache_1 PF02743.18 AJD70065.1 - 1.9e-13 50.8 0.0 5.2e-13 49.4 0.0 1.7 1 0 0 1 1 1 1 Cache domain HisKA PF00512.25 AJD70065.1 - 4.8e-09 36.1 0.1 4.8e-09 36.1 0.1 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 AJD70065.1 - 2.2e-05 24.7 0.2 0.00035 20.8 0.0 3.0 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 AJD70065.1 - 0.00021 21.2 0.0 0.0012 18.8 0.0 2.4 1 0 0 1 1 1 1 PAS domain dCache_3 PF14827.6 AJD70065.1 - 0.00051 19.8 0.1 0.0012 18.5 0.1 1.6 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase PAS PF00989.25 AJD70065.1 - 0.00067 19.6 0.0 0.0023 17.9 0.0 2.0 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 AJD70065.1 - 0.0026 17.7 0.2 0.0081 16.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Lebercilin PF15619.6 AJD70065.1 - 5.9 6.5 9.2 4.2 7.0 0.8 3.1 3 0 0 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease Sugar_tr PF00083.24 AJD70066.1 - 2.1e-33 115.9 31.6 1.5e-29 103.1 31.6 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AJD70066.1 - 1.8e-29 102.8 71.2 5.9e-25 87.9 48.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 AJD70066.1 - 0.0037 16.2 0.5 0.0037 16.2 0.5 2.5 2 0 0 2 2 2 2 MFS_1 like family SBP_bac_11 PF13531.6 AJD70067.1 - 8.9e-37 127.0 2.5 1e-36 126.8 2.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AJD70067.1 - 1.3e-06 28.6 0.0 0.044 13.7 0.0 2.4 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AJD70067.1 - 1.5e-05 25.0 0.0 0.0034 17.2 0.0 2.2 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein RecA PF00154.21 AJD70067.1 - 0.11 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein LysR_substrate PF03466.20 AJD70068.1 - 2.3e-42 144.7 1.2 3.5e-42 144.1 1.2 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70068.1 - 1.4e-23 82.5 4.5 1.3e-22 79.5 1.3 3.1 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 AJD70068.1 - 6.3e-05 22.2 0.0 0.00044 19.4 0.0 2.1 1 1 1 2 2 2 1 PBP superfamily domain MarR_2 PF12802.7 AJD70068.1 - 0.023 14.6 0.9 0.071 13.0 0.1 2.2 3 1 0 3 3 3 0 MarR family HTH_30 PF13556.6 AJD70068.1 - 0.025 14.3 0.3 0.049 13.4 0.3 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR PF01047.22 AJD70068.1 - 0.066 13.1 0.1 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 AJD70068.1 - 0.085 12.4 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AJD70068.1 - 2.3 8.1 5.7 0.47 10.3 0.2 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Aldo_ket_red PF00248.21 AJD70069.1 - 3.8e-71 239.7 0.0 4.3e-71 239.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SnoaL_2 PF12680.7 AJD70070.1 - 3.7e-12 46.8 0.2 5.8e-12 46.2 0.2 1.3 1 0 0 1 1 1 1 SnoaL-like domain Atu4866 PF11512.8 AJD70071.1 - 2.8e-38 130.1 1.8 3.4e-38 129.9 1.8 1.1 1 0 0 1 1 1 1 Agrobacterium tumefaciens protein Atu4866 GalKase_gal_bdg PF10509.9 AJD70071.1 - 0.12 11.9 0.2 0.29 10.7 0.2 1.6 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Response_reg PF00072.24 AJD70073.1 - 8.3e-19 67.8 0.0 1.6e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD70073.1 - 1.4e-17 63.0 0.0 2e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD70073.1 - 1.4e-07 31.1 0.1 2.4e-07 30.3 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 AJD70073.1 - 0.0019 18.3 0.0 7.2 6.8 0.0 3.6 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70073.1 - 0.02 14.7 0.0 0.071 12.9 0.0 1.9 1 1 0 1 1 1 0 Homeodomain-like domain Sigma70_ECF PF07638.11 AJD70073.1 - 0.042 13.7 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor HTH_20 PF12840.7 AJD70073.1 - 0.062 13.4 0.1 0.19 11.8 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 AJD70073.1 - 0.075 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 AJD70073.1 - 0.099 12.5 0.4 0.55 10.1 0.1 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_r4 PF04545.16 AJD70073.1 - 0.1 12.1 0.1 0.29 10.7 0.1 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 AJD70073.1 - 0.12 12.8 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Phenol_monoox PF04663.12 AJD70073.1 - 0.13 12.4 0.2 0.41 10.8 0.1 1.8 2 0 0 2 2 2 0 Phenol hydroxylase conserved region GIT_SHD PF08518.11 AJD70073.1 - 0.25 11.0 0.8 0.47 10.1 0.3 1.7 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT SBP_bac_11 PF13531.6 AJD70074.1 - 4.7e-19 69.0 0.5 6.7e-19 68.5 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AJD70074.1 - 6.3e-13 48.7 0.0 2e-12 47.1 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AJD70074.1 - 3.7e-10 40.1 0.0 4.6e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AJD70074.1 - 9e-10 39.0 0.0 1.3e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein 2CSK_N PF08521.10 AJD70075.1 - 3.4e-38 130.9 2.3 7.9e-38 129.7 2.3 1.6 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal HATPase_c PF02518.26 AJD70075.1 - 4.9e-20 72.1 0.0 1.4e-19 70.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD70075.1 - 6.9e-10 38.8 2.2 2.1e-09 37.3 2.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AJD70075.1 - 2.8e-06 27.3 0.0 7.5e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 AJD70075.1 - 0.028 14.3 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PilJ PF13675.6 AJD70075.1 - 0.14 12.2 3.9 0.4 10.7 2.9 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2620 PF10941.8 AJD70075.1 - 0.16 12.1 0.1 0.29 11.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF2620 Response_reg PF00072.24 AJD70076.1 - 6.4e-24 84.3 0.0 8.7e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD70076.1 - 2e-16 59.8 0.0 4e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Porin_O_P PF07396.11 AJD70077.1 - 7.9e-92 308.2 4.6 8.9e-92 308.0 4.6 1.0 1 0 0 1 1 1 1 Phosphate-selective porin O and P VCH_CASS14 PF18315.1 AJD70077.1 - 0.0089 16.1 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Integron cassette protein VCH_CASS1 chain CitMHS PF03600.16 AJD70078.1 - 8.3e-58 195.9 29.2 8.3e-58 195.9 29.2 1.5 2 0 0 2 2 2 1 Citrate transporter DcuC PF03606.15 AJD70078.1 - 1.2e-11 43.7 16.5 1.9e-11 43.1 16.5 1.2 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier Na_H_antiporter PF03553.14 AJD70078.1 - 3e-09 36.5 36.0 1.5e-05 24.4 18.2 2.1 2 0 0 2 2 2 2 Na+/H+ antiporter family DctM PF06808.12 AJD70078.1 - 1.9e-07 30.3 8.8 1.9e-07 30.3 8.8 2.8 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component adh_short_C2 PF13561.6 AJD70080.1 - 2.6e-52 177.7 1.0 3.1e-52 177.4 1.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD70080.1 - 4.5e-49 166.6 0.4 5.7e-49 166.2 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD70080.1 - 5.8e-17 62.2 0.7 7.8e-17 61.8 0.7 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 AJD70080.1 - 4.9e-06 26.5 0.1 8e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 AJD70080.1 - 0.0011 18.5 0.0 0.002 17.6 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_trans_4_4 PF13579.6 AJD70080.1 - 0.0043 17.5 0.2 0.95 9.9 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 AJD70080.1 - 0.0081 15.9 0.0 2.1 8.0 0.0 2.2 2 0 0 2 2 2 2 Starch synthase catalytic domain F420_oxidored PF03807.17 AJD70080.1 - 0.013 16.1 0.1 0.029 14.9 0.0 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 AJD70080.1 - 0.064 12.9 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 AJD70080.1 - 0.086 13.1 0.0 0.21 11.9 0.0 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Peripla_BP_3 PF13377.6 AJD70081.1 - 3.9e-38 131.4 3.7 7.7e-38 130.4 0.6 2.5 2 1 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD70081.1 - 7.5e-19 68.2 0.0 9.9e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 AJD70081.1 - 1e-11 44.9 0.0 1.6e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 AJD70081.1 - 1.3e-11 44.1 0.6 2.3e-11 43.3 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_Crp_2 PF13545.6 AJD70081.1 - 0.0073 16.3 0.1 0.02 14.9 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD70081.1 - 0.0076 15.6 0.0 0.066 12.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 AJD70081.1 - 0.011 15.5 0.0 0.035 13.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain AbiEi_4 PF13338.6 AJD70081.1 - 0.03 14.5 0.4 9.3 6.5 0.1 3.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_23 PF13384.6 AJD70081.1 - 0.031 14.1 0.1 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 AJD70081.1 - 0.053 13.4 2.3 0.057 13.3 0.2 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_31 PF13560.6 AJD70081.1 - 0.056 13.8 0.9 0.31 11.4 0.5 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 AJD70081.1 - 0.065 13.1 0.1 0.26 11.2 0.1 2.0 1 0 0 1 1 1 0 MarR family Sigma54_DBD PF04552.13 AJD70081.1 - 0.087 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_IclR PF09339.10 AJD70081.1 - 0.09 12.6 2.5 0.21 11.4 0.2 2.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.6 AJD70081.1 - 0.15 12.1 0.0 0.36 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 AJD70081.1 - 0.15 11.6 0.0 0.41 10.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MFS_1 PF07690.16 AJD70082.1 - 6.3e-21 74.7 32.6 6.3e-21 74.7 32.6 1.6 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 AJD70082.1 - 6.4e-10 38.2 20.7 2.7e-09 36.1 14.8 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 AJD70082.1 - 0.0088 14.9 7.3 0.057 12.3 2.8 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter DUF1453 PF07301.11 AJD70082.1 - 0.36 10.8 6.6 0.82 9.7 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1453) TonB_dep_Rec PF00593.24 AJD70083.1 - 5.9e-24 85.8 44.3 5.9e-24 85.8 44.3 2.2 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70083.1 - 1.9e-17 63.7 1.2 9.2e-17 61.6 1.2 2.3 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70083.1 - 0.0094 15.0 6.5 0.49 9.3 0.7 3.6 3 1 0 3 3 3 2 Outer membrane protein beta-barrel family Alpha-amylase PF00128.24 AJD70084.1 - 8.6e-37 127.5 0.0 3.4e-32 112.3 0.0 2.1 2 0 0 2 2 2 2 Alpha amylase, catalytic domain hDGE_amylase PF14701.6 AJD70084.1 - 0.02 14.0 0.0 0.029 13.5 0.0 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain DJ-1_PfpI PF01965.24 AJD70085.1 - 1.6e-15 57.3 0.0 3.5e-15 56.2 0.0 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 AJD70085.1 - 8.8e-07 28.8 0.0 2.9e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 ThiJ/PfpI family-like DUF1704 PF08014.11 AJD70086.1 - 2.7e-117 391.9 0.0 3.1e-117 391.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1704) RsgA_GTPase PF03193.16 AJD70087.1 - 1.4e-47 161.8 0.0 2.1e-47 161.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 AJD70087.1 - 1e-06 28.8 0.0 2.5e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.16 AJD70087.1 - 1.1e-05 24.9 0.1 2.3e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 AIG1 family ABC_tran PF00005.27 AJD70087.1 - 1.6e-05 25.4 0.0 3.1e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Dynamin_N PF00350.23 AJD70087.1 - 0.00047 20.3 0.8 0.29 11.2 0.6 2.5 1 1 1 2 2 2 2 Dynamin family cobW PF02492.19 AJD70087.1 - 0.00066 19.3 0.2 0.0089 15.6 0.2 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Septin PF00735.18 AJD70087.1 - 0.00072 18.9 0.0 0.0012 18.1 0.0 1.4 1 0 0 1 1 1 1 Septin AAA_25 PF13481.6 AJD70087.1 - 0.0017 18.0 0.1 0.0049 16.5 0.1 1.7 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 AJD70087.1 - 0.0025 17.4 1.3 0.26 10.8 0.6 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_29 PF13555.6 AJD70087.1 - 0.0079 15.9 0.1 0.023 14.4 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 AJD70087.1 - 0.011 15.9 0.5 0.026 14.7 0.4 1.9 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 AJD70087.1 - 0.014 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase FeoB_N PF02421.18 AJD70087.1 - 0.015 14.8 0.1 0.08 12.5 0.1 2.1 2 1 0 2 2 2 0 Ferrous iron transport protein B AAA_16 PF13191.6 AJD70087.1 - 0.024 15.0 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 AJD70087.1 - 0.051 12.8 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 AJD70087.1 - 0.066 13.5 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 AJD70087.1 - 0.082 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 AJD70087.1 - 0.15 12.3 0.5 0.46 10.7 0.5 1.9 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 AJD70087.1 - 0.16 11.4 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Aminotran_1_2 PF00155.21 AJD70088.1 - 2.2e-51 175.1 0.0 2.8e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 AJD70088.1 - 5.2e-07 29.3 0.0 9.9e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 AJD70088.1 - 0.061 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase Lipase_GDSL_2 PF13472.6 AJD70089.1 - 2.3e-24 86.8 2.3 2.7e-24 86.5 2.3 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 AJD70089.1 - 0.0008 19.4 0.0 0.00099 19.1 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Methyltransf_12 PF08242.12 AJD70090.1 - 4.2e-15 56.3 0.1 6.4e-15 55.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD70090.1 - 6.6e-12 45.5 0.0 8.7e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD70090.1 - 6.5e-10 39.6 0.1 1.2e-09 38.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD70090.1 - 1.1e-08 35.1 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD70090.1 - 2.1e-07 31.5 0.1 3.3e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AJD70090.1 - 9.7e-07 28.5 0.1 1.7e-06 27.7 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 AJD70090.1 - 0.0002 21.4 0.0 0.00029 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 AJD70090.1 - 0.0002 20.8 0.0 0.00026 20.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 AJD70090.1 - 0.00048 19.8 0.0 0.00063 19.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 AJD70090.1 - 0.00053 19.5 0.1 0.0007 19.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.11 AJD70090.1 - 0.0031 17.1 0.1 0.0052 16.4 0.1 1.4 1 1 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.12 AJD70090.1 - 0.019 14.5 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CheR PF01739.18 AJD70090.1 - 0.029 13.9 0.0 0.11 12.0 0.0 1.7 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain AdoMet_MTase PF07757.13 AJD70090.1 - 0.043 14.1 0.0 0.072 13.4 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase TonB_dep_Rec PF00593.24 AJD70091.1 - 4.4e-43 148.9 31.0 4.4e-43 148.9 31.0 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70091.1 - 1.5e-12 48.0 4.4 4.5e-12 46.5 0.8 3.1 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain Polysacc_deac_1 PF01522.21 AJD70092.1 - 4.9e-31 107.2 0.0 1.1e-30 106.1 0.0 1.5 2 0 0 2 2 2 1 Polysaccharide deacetylase DUF2484 PF10658.9 AJD70092.1 - 0.043 14.1 9.4 0.055 13.8 8.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2484) Glutaredoxin PF00462.24 AJD70093.1 - 2.3e-19 69.3 0.0 4.1e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Rhodanese PF00581.20 AJD70093.1 - 1.1e-08 35.6 0.0 6.3e-08 33.1 0.0 2.1 1 1 0 1 1 1 1 Rhodanese-like domain GST_N_3 PF13417.6 AJD70093.1 - 5.1e-05 23.6 0.0 9.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Fe-S_biosyn PF01521.20 AJD70093.1 - 0.00055 20.1 0.0 0.0017 18.5 0.0 1.8 1 1 0 1 1 1 1 Iron-sulphur cluster biosynthesis VCBS PF13517.6 AJD70094.1 - 0.097 13.3 0.5 0.26 11.9 0.5 1.8 1 1 0 1 1 1 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF924 PF06041.11 AJD70095.1 - 2.2e-55 187.6 4.8 2.5e-55 187.4 4.8 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF924) HTH_Tnp_1 PF01527.20 AJD70096.1 - 9.3e-19 67.5 0.1 1.2e-18 67.2 0.1 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AJD70096.1 - 1.1e-08 34.6 0.1 1.8e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 AJD70096.1 - 4.2e-07 30.0 0.1 5.8e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AJD70096.1 - 0.00016 21.8 0.1 0.00025 21.2 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD70096.1 - 0.00017 21.5 0.0 0.00022 21.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 AJD70096.1 - 0.0006 19.3 0.0 0.0015 18.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 AJD70096.1 - 0.0018 18.3 0.1 0.0033 17.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Terminase_5 PF06056.12 AJD70096.1 - 0.0044 16.9 0.1 0.0073 16.2 0.1 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MarR_2 PF12802.7 AJD70096.1 - 0.017 15.0 0.0 0.038 13.9 0.0 1.6 2 0 0 2 2 2 0 MarR family P22_AR_N PF10547.9 AJD70096.1 - 0.036 14.4 0.0 0.045 14.1 0.0 1.1 1 0 0 1 1 1 0 P22_AR N-terminal domain HTH_Tnp_ISL3 PF13542.6 AJD70096.1 - 0.037 13.5 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 AJD70096.1 - 0.04 13.7 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1492 PF07374.11 AJD70096.1 - 0.053 13.7 0.2 0.12 12.6 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1492) HTH_AsnC-type PF13404.6 AJD70096.1 - 0.061 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_AraC PF00165.23 AJD70096.1 - 0.14 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family rve_3 PF13683.6 AJD70097.1 - 6.7e-26 89.9 0.0 1.2e-25 89.1 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AJD70097.1 - 1.1e-20 74.0 0.0 1.8e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AJD70097.1 - 5.7e-05 23.2 0.1 0.00013 22.1 0.1 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD70097.1 - 9.8e-05 22.4 0.6 0.00018 21.6 0.6 1.4 1 0 0 1 1 1 1 HTH-like domain DDE_3 PF13358.6 AJD70097.1 - 0.014 15.1 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease RhgB_N PF09284.10 AJD70098.1 - 9.9e-88 293.9 0.1 1.3e-87 293.6 0.1 1.1 1 0 0 1 1 1 1 Rhamnogalacturonan lyase B, N-terminal CBM-like PF14683.6 AJD70098.1 - 1.2e-36 126.0 0.0 2e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain III fn3_3 PF14686.6 AJD70098.1 - 1.4e-16 60.1 0.5 3.1e-16 58.9 0.5 1.7 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.6 AJD70098.1 - 2.4e-05 24.5 0.8 7.6e-05 22.9 0.8 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Peptidase_S24 PF00717.23 AJD70098.1 - 0.038 13.9 0.0 0.093 12.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase S24-like PapC_N PF13954.6 AJD70098.1 - 0.14 12.1 0.0 0.37 10.8 0.0 1.7 1 1 0 1 1 1 0 PapC N-terminal domain Glyco_hydro_12 PF01670.16 AJD70100.1 - 4.7e-13 49.6 0.9 5.7e-13 49.3 0.9 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 DegV PF02645.16 AJD70101.1 - 4e-78 262.6 0.0 4.6e-78 262.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein, DegV family COG1307 Pep_deformylase PF01327.21 AJD70102.1 - 2.2e-41 141.1 0.0 2.6e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase ArsC PF03960.15 AJD70103.1 - 4.4e-14 52.2 0.0 5.4e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 AJD70103.1 - 0.00011 22.3 0.0 0.00025 21.2 0.0 1.6 1 1 0 1 1 1 1 Glutaredoxin PA PF02225.22 AJD70105.1 - 1.4e-16 60.3 3.8 3.4e-16 59.0 3.8 1.7 1 0 0 1 1 1 1 PA domain Reprolysin_3 PF13582.6 AJD70105.1 - 0.21 12.1 0.2 0.53 10.8 0.2 1.8 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like BCSC_C PF05420.11 AJD70106.1 - 3.5e-103 345.3 11.6 6.5e-102 341.2 11.6 2.2 1 1 0 1 1 1 1 Cellulose synthase operon protein C C-terminus (BCSC_C) TPR_19 PF14559.6 AJD70106.1 - 1e-43 147.6 105.7 4.8e-09 36.6 3.7 11.7 10 2 2 12 12 10 10 Tetratricopeptide repeat TPR_14 PF13428.6 AJD70106.1 - 2.4e-21 74.6 136.9 0.00029 21.4 4.9 20.4 9 5 12 21 21 20 11 Tetratricopeptide repeat TPR_16 PF13432.6 AJD70106.1 - 7.1e-17 61.8 157.6 0.0002 21.9 16.6 14.9 13 4 2 15 15 14 9 Tetratricopeptide repeat TPR_2 PF07719.17 AJD70106.1 - 8.1e-14 50.5 55.5 0.27 11.4 0.3 15.2 15 0 0 15 15 15 4 Tetratricopeptide repeat TPR_17 PF13431.6 AJD70106.1 - 4.9e-12 45.3 27.5 0.21 12.1 0.1 11.7 12 0 0 12 12 11 4 Tetratricopeptide repeat TPR_12 PF13424.6 AJD70106.1 - 8.9e-11 41.9 89.6 0.00034 20.8 6.5 11.7 9 3 3 12 12 11 7 Tetratricopeptide repeat TPR_7 PF13176.6 AJD70106.1 - 3.9e-10 39.0 46.0 0.14 12.2 0.8 13.4 12 2 2 14 14 14 4 Tetratricopeptide repeat ANAPC3 PF12895.7 AJD70106.1 - 1.5e-07 31.5 14.7 0.015 15.5 2.1 7.2 5 3 3 8 8 8 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 AJD70106.1 - 2.1e-07 30.6 13.7 0.44 10.9 0.1 8.8 10 0 0 10 10 9 2 Tetratricopeptide repeat TPR_11 PF13414.6 AJD70106.1 - 2.3e-07 30.4 32.0 0.0021 17.7 0.1 10.1 10 3 2 12 12 12 3 TPR repeat TPR_1 PF00515.28 AJD70106.1 - 2.9e-07 30.0 31.5 0.29 11.0 0.6 10.7 12 0 0 12 12 11 3 Tetratricopeptide repeat TPR_MalT PF17874.1 AJD70106.1 - 2e-06 27.4 66.0 2.3e-05 23.9 17.1 6.7 2 1 3 5 5 5 2 MalT-like TPR region Coatomer_E PF04733.14 AJD70106.1 - 5.7e-05 22.7 6.2 0.001 18.5 0.4 4.6 5 0 0 5 5 5 1 Coatomer epsilon subunit NARP1 PF12569.8 AJD70106.1 - 0.00048 19.2 1.7 4.9 5.9 0.0 4.4 4 1 1 5 5 5 1 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 AJD70106.1 - 0.00077 19.9 60.9 0.012 16.2 1.9 13.8 14 3 1 15 15 14 2 Tetratricopeptide repeat TPR_4 PF07721.14 AJD70106.1 - 0.0013 19.1 0.6 0.0013 19.1 0.6 17.6 19 0 0 19 19 14 4 Tetratricopeptide repeat TPR_9 PF13371.6 AJD70106.1 - 0.0067 16.6 5.3 0.0067 16.6 5.3 9.6 8 2 2 10 10 10 5 Tetratricopeptide repeat FAT PF02259.23 AJD70106.1 - 0.0091 15.2 2.9 4.8 6.3 0.0 3.3 2 1 1 3 3 3 2 FAT domain PPR PF01535.20 AJD70106.1 - 0.019 15.2 0.0 5.1 7.6 0.0 4.1 4 0 0 4 4 4 0 PPR repeat HrpB1_HrpK PF09613.10 AJD70106.1 - 4.9 6.8 20.4 11 5.6 0.3 6.0 5 1 1 6 6 6 0 Bacterial type III secretion protein (HrpB1_HrpK) Glyco_hydro_8 PF01270.17 AJD70107.1 - 6.5e-60 202.7 0.0 8.3e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 8 BcsB PF03170.13 AJD70108.1 - 1.3e-208 694.2 1.1 1.6e-208 694.0 1.1 1.1 1 0 0 1 1 1 1 Bacterial cellulose synthase subunit PCuAC PF04314.13 AJD70108.1 - 0.18 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 Copper chaperone PCu(A)C Glycos_transf_2 PF00535.26 AJD70109.1 - 1.5e-36 125.8 0.0 2.1e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70109.1 - 4.6e-20 72.5 0.0 7.7e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 AJD70109.1 - 5.6e-18 65.6 1.7 5.6e-18 65.6 1.7 2.7 2 1 0 3 3 3 1 Glycosyl transferase family group 2 Cellulose_synt PF03552.14 AJD70109.1 - 2.6e-15 56.0 4.1 9.4e-11 40.9 0.6 3.7 2 1 1 3 3 3 3 Cellulose synthase Glyco_transf_21 PF13506.6 AJD70109.1 - 6.2e-14 51.8 0.0 1.2e-13 50.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 PilZ PF07238.14 AJD70109.1 - 1.1e-11 44.9 0.0 2.1e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 PilZ domain Cellsynth_D PF03500.13 AJD70112.1 - 0.00029 20.7 0.1 0.00037 20.4 0.1 1.1 1 0 0 1 1 1 1 Cellulose synthase subunit D ATX_III PF08098.11 AJD70112.1 - 0.17 12.0 1.0 0.17 12.0 1.0 1.7 2 0 0 2 2 2 0 Anemonia sulcata toxin III family AAA_22 PF13401.6 AJD70112.1 - 0.18 12.1 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain SPT6_acidic PF14632.6 AJD70112.1 - 0.21 12.2 0.0 0.29 11.8 0.0 1.2 1 0 0 1 1 1 0 Acidic N-terminal SPT6 NAPRTase PF04095.16 AJD70113.1 - 3.3e-77 259.3 0.0 4.1e-77 259.1 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 AJD70113.1 - 6.6e-37 126.7 0.0 1.3e-36 125.8 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Glyco_hydro_53 PF07745.13 AJD70114.1 - 0.0026 16.8 0.1 0.19 10.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 53 YXWGXW PF12779.7 AJD70114.1 - 0.012 15.7 0.5 0.036 14.2 0.5 1.8 1 0 0 1 1 1 0 YXWGXW repeat (2 copies) Glyco_hydro_cc PF11790.8 AJD70114.1 - 0.061 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase catalytic core Cellulase PF00150.18 AJD70114.1 - 0.083 12.3 0.0 1.4 8.3 0.0 2.0 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Glyco_tranf_2_3 PF13641.6 AJD70116.1 - 9.4e-24 84.6 0.0 1.5e-23 83.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 AJD70116.1 - 2.4e-23 83.1 4.5 2.4e-23 83.1 4.5 2.4 2 0 0 2 2 2 1 Glycosyl transferase family group 2 T2SSE_N PF05157.15 AJD70116.1 - 2.3e-16 60.0 0.3 5.6e-16 58.8 0.3 1.7 1 1 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain Glycos_transf_2 PF00535.26 AJD70116.1 - 3.1e-13 49.9 0.0 7.4e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 AJD70116.1 - 3.7e-09 36.3 0.0 7.9e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 AJD70118.1 - 1.2e-19 70.8 0.0 1.7e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70118.1 - 6.2e-17 62.3 0.9 8.3e-17 61.8 0.9 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 AJD70118.1 - 1.8e-07 31.1 0.0 6e-07 29.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.9 AJD70118.1 - 6.2e-06 25.9 0.0 0.0034 16.9 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 AJD70118.1 - 9.7e-05 21.9 0.5 0.00046 19.7 0.5 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 AJD70118.1 - 0.00014 21.9 0.5 0.00018 21.5 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 AJD70118.1 - 0.02 15.4 0.0 0.047 14.2 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 APH PF01636.23 AJD70119.1 - 3.2e-27 96.0 26.2 3.9e-27 95.7 23.5 2.3 1 1 2 3 3 3 1 Phosphotransferase enzyme family DUF1679 PF07914.11 AJD70119.1 - 0.0018 17.2 0.0 0.0028 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 AJD70119.1 - 0.0082 15.5 0.0 0.0082 15.5 0.0 1.6 2 0 0 2 2 2 1 Ecdysteroid kinase TonB_dep_Rec PF00593.24 AJD70121.1 - 1.3e-33 117.6 5.1 1.5e-33 117.4 5.1 1.0 1 0 0 1 1 1 1 TonB dependent receptor NMN_transporter PF04973.12 AJD70122.1 - 1.1e-48 165.5 23.5 1.3e-48 165.3 23.5 1.0 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter YidD PF01809.18 AJD70122.1 - 0.17 11.8 0.4 2.7 7.9 0.1 2.4 2 0 0 2 2 2 0 Putative membrane protein insertion efficiency factor YoqO PF14037.6 AJD70122.1 - 0.17 12.4 2.6 1.3 9.5 0.1 2.5 2 1 1 3 3 3 0 YoqO-like protein MerC PF03203.14 AJD70122.1 - 9.3 6.7 16.8 6.1 7.3 2.0 2.7 2 1 0 2 2 2 0 MerC mercury resistance protein UTRA PF07702.13 AJD70123.1 - 2.3e-27 95.6 0.1 3.3e-27 95.0 0.1 1.2 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 AJD70123.1 - 3.2e-18 65.1 0.1 5.2e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 AJD70123.1 - 0.00095 19.1 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 AJD70123.1 - 0.036 14.0 0.2 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Glycos_transf_2 PF00535.26 AJD70124.1 - 0.0008 19.3 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Secretin PF00263.21 AJD70125.1 - 1.6e-44 151.6 2.1 2.7e-43 147.6 2.4 2.3 2 0 0 2 2 2 1 Bacterial type II and III secretion system protein Secretin_N PF03958.17 AJD70125.1 - 8.1e-29 99.9 26.4 2.9e-09 37.2 25.3 4.6 3 1 0 3 3 3 3 Bacterial type II/III secretion system short domain TMEM213 PF15192.6 AJD70126.1 - 0.088 12.8 0.4 0.18 11.8 0.4 1.5 1 0 0 1 1 1 0 TMEM213 family T2SSM_b PF10741.9 AJD70127.1 - 8.2e-30 102.9 0.0 1.5e-29 102.1 0.0 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M subtype b Wzz PF02706.15 AJD70127.1 - 0.016 15.5 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Chain length determinant protein T2SSM PF04612.12 AJD70127.1 - 0.052 13.6 1.8 0.079 13.0 1.8 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M OATP PF03137.20 AJD70127.1 - 0.18 10.0 0.0 0.21 9.8 0.0 1.1 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family PilN PF05137.13 AJD70128.1 - 1e-13 51.2 0.0 2.1e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Fimbrial assembly protein (PilN) DUF1003 PF06210.11 AJD70128.1 - 0.018 15.1 0.2 0.029 14.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) T2SSK PF03934.13 AJD70129.1 - 6.4e-47 160.3 2.1 3.5e-46 157.9 2.1 1.8 1 1 0 1 1 1 1 Type II secretion system (T2SS), protein K HHH_3 PF12836.7 AJD70129.1 - 0.066 13.5 0.0 15 5.9 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif N_methyl PF07963.12 AJD70130.1 - 0.00065 19.2 0.7 0.00065 19.2 0.7 2.0 2 0 0 2 2 2 1 Prokaryotic N-terminal methylation motif N_methyl PF07963.12 AJD70131.1 - 7.7e-09 34.7 1.1 1.3e-08 34.0 1.1 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif PulG PF11773.8 AJD70131.1 - 0.006 16.4 0.4 0.0086 15.9 0.4 1.2 1 0 0 1 1 1 1 Type II secretory pathway pseudopilin GspH PF12019.8 AJD70132.1 - 1.3e-05 25.5 0.7 2.3e-05 24.8 0.7 1.4 1 0 0 1 1 1 1 Type II transport protein GspH N_methyl PF07963.12 AJD70132.1 - 0.029 13.9 3.3 0.053 13.1 3.3 1.5 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation motif T2SSG PF08334.11 AJD70133.1 - 1.7e-28 98.8 0.1 2e-28 98.6 0.1 1.1 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein G N_methyl PF07963.12 AJD70133.1 - 0.001 18.6 4.9 0.0014 18.1 4.9 1.2 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif T2SSF PF00482.23 AJD70134.1 - 1.5e-57 192.9 8.3 1.9e-30 105.4 0.3 2.3 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DPM3 PF08285.11 AJD70134.1 - 5 7.4 7.8 1.5 9.1 0.1 2.9 4 0 0 4 4 4 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) T2SSE PF00437.20 AJD70135.1 - 2.1e-87 292.7 1.8 3.2e-87 292.1 1.8 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSE_N PF05157.15 AJD70135.1 - 3.3e-14 53.1 0.0 1e-13 51.5 0.0 1.9 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_16 PF13191.6 AJD70135.1 - 0.00049 20.5 0.1 0.0018 18.7 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 AJD70135.1 - 0.0011 19.3 0.0 0.003 17.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD70135.1 - 0.0034 17.1 0.1 0.009 15.7 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.6 AJD70135.1 - 0.0044 17.3 0.1 0.013 15.8 0.1 1.8 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 AJD70135.1 - 0.0046 16.5 0.1 0.0088 15.6 0.1 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 AJD70135.1 - 0.0052 16.5 0.0 0.014 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 AJD70135.1 - 0.0072 16.4 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 AJD70135.1 - 0.0077 16.7 0.0 0.02 15.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 AJD70135.1 - 0.0085 15.7 0.1 0.021 14.4 0.1 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 AJD70135.1 - 0.011 15.7 1.6 0.061 13.2 0.7 2.3 2 0 0 2 2 2 0 NTPase AAA_11 PF13086.6 AJD70135.1 - 0.013 15.3 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AJD70135.1 - 0.032 14.7 0.0 0.057 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 AJD70135.1 - 0.052 13.5 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea FtsK_SpoIIIE PF01580.18 AJD70135.1 - 0.095 12.0 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family ResIII PF04851.15 AJD70135.1 - 0.11 12.5 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Rad17 PF03215.15 AJD70135.1 - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain MobB PF03205.14 AJD70135.1 - 0.17 11.8 0.0 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DAP3 PF10236.9 AJD70135.1 - 0.22 10.6 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Peptidase_S8 PF00082.22 AJD70136.1 - 2.4e-49 168.2 10.1 4.2e-49 167.4 10.1 1.3 1 0 0 1 1 1 1 Subtilase family PPC PF04151.15 AJD70136.1 - 3.9e-13 50.3 0.4 3.9e-13 50.3 0.4 2.6 2 1 1 3 3 3 1 Bacterial pre-peptidase C-terminal domain THF_DHG_CYH PF00763.23 AJD70136.1 - 0.006 16.8 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YadA_head PF05658.14 AJD70137.1 - 2.8e-163 528.0 764.1 5.1e-07 29.9 6.2 55.0 46 4 9 57 57 57 54 Head domain of trimeric autotransporter adhesin YadA_stalk PF05662.14 AJD70137.1 - 2.8e-50 168.4 114.9 2e-09 37.7 2.2 12.3 11 0 0 11 11 11 7 Coiled stalk of trimeric autotransporter adhesin ESPR PF13018.6 AJD70137.1 - 1.4e-08 34.3 3.9 2.3e-08 33.7 0.7 2.6 2 0 0 2 2 2 1 Extended Signal Peptide of Type V secretion system Peptidase_S8 PF00082.22 AJD70138.1 - 8.5e-45 153.3 4.8 8.5e-45 153.3 4.8 1.7 2 0 0 2 2 2 1 Subtilase family PPC PF04151.15 AJD70138.1 - 6.9e-06 27.1 1.5 2.5e-05 25.3 0.1 2.5 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain YadA_head PF05658.14 AJD70139.1 - 1.1e-53 178.7 263.0 6.4e-07 29.6 1.9 23.4 21 1 5 26 26 26 20 Head domain of trimeric autotransporter adhesin YadA_stalk PF05662.14 AJD70139.1 - 2e-26 92.0 25.2 1.6e-08 34.8 2.5 5.7 3 0 0 3 3 3 3 Coiled stalk of trimeric autotransporter adhesin YadA_anchor PF03895.15 AJD70139.1 - 1.7e-06 28.0 8.3 1.7e-06 28.0 8.3 15.7 9 5 7 16 16 16 1 YadA-like membrane anchor domain GATase_5 PF13507.6 AJD70140.1 - 1.1e-98 329.5 0.0 1.6e-98 328.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AIRS_C PF02769.22 AJD70140.1 - 3.7e-43 147.4 0.2 1.5e-30 106.4 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_N PF18076.1 AJD70140.1 - 2.4e-27 95.2 0.0 4e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase N-terminal FGAR-AT_linker PF18072.1 AJD70140.1 - 4.5e-23 81.5 0.0 9.6e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 AJD70140.1 - 0.051 14.2 0.5 0.72 10.6 0.0 2.6 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain Thioredoxin_2 PF13098.6 AJD70141.1 - 2.3e-25 89.2 0.0 3.3e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain DsbC_N PF10411.9 AJD70141.1 - 9e-17 60.3 0.1 1.5e-16 59.5 0.1 1.4 1 0 0 1 1 1 1 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 AJD70141.1 - 2.4e-08 34.3 0.0 0.0039 17.4 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin DSBA PF01323.20 AJD70141.1 - 2.3e-07 30.8 0.1 0.00078 19.3 0.0 2.5 2 1 1 3 3 3 2 DSBA-like thioredoxin domain DUF2757 PF10955.8 AJD70141.1 - 0.17 12.1 0.0 0.31 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) Phage_integrase PF00589.22 AJD70142.1 - 1.6e-45 155.0 0.0 2.1e-45 154.6 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 AJD70142.1 - 4.7e-16 58.9 1.4 7.5e-15 55.0 0.1 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 AJD70142.1 - 0.0018 18.7 0.0 0.0072 16.8 0.0 2.1 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain RDD PF06271.12 AJD70143.1 - 4.6e-20 72.2 7.4 5.5e-20 72.0 7.4 1.1 1 0 0 1 1 1 1 RDD family LapA_dom PF06305.11 AJD70143.1 - 5 7.0 8.4 31 4.5 0.4 3.1 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain LptF_LptG PF03739.14 AJD70145.1 - 1.5e-71 241.1 0.3 1.7e-71 241.0 0.3 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG LptF_LptG PF03739.14 AJD70146.1 - 1.7e-69 234.4 2.1 1.9e-69 234.2 2.1 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG DUF805 PF05656.14 AJD70146.1 - 0.36 11.3 4.3 5.2 7.5 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF805) Saf_2TM PF18303.1 AJD70146.1 - 0.72 9.4 3.0 0.58 9.7 0.4 2.0 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain Peptidase_M17 PF00883.21 AJD70147.1 - 1.6e-118 395.6 0.0 2.1e-118 395.1 0.0 1.2 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 AJD70147.1 - 5.5e-30 103.8 2.0 1.3e-29 102.6 1.6 1.9 1 1 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain YpmT PF17431.2 AJD70148.1 - 0.054 13.5 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized YmpT-like NADH_dh_m_C1 PF15088.6 AJD70148.1 - 0.17 11.5 1.0 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial YfhO PF09586.10 AJD70148.1 - 0.27 9.4 2.7 0.29 9.3 2.7 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DNA_pol3_chi PF04364.13 AJD70149.1 - 5.7e-33 114.0 0.0 6.3e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase III chi subunit, HolC Ycf54 PF10674.9 AJD70149.1 - 0.095 13.0 0.0 0.76 10.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2488) tRNA-synt_1 PF00133.22 AJD70150.1 - 1e-197 658.1 0.0 3e-196 653.3 0.0 2.5 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 AJD70150.1 - 4.3e-41 140.4 0.0 6.7e-41 139.8 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 AJD70150.1 - 4.9e-19 68.4 0.1 2.4e-06 26.5 0.0 4.6 5 0 0 5 5 5 3 tRNA synthetases class I (M) Val_tRNA-synt_C PF10458.9 AJD70150.1 - 8.1e-18 64.5 0.1 1.7e-17 63.4 0.1 1.6 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1_2 PF13603.6 AJD70150.1 - 7.1e-08 32.2 0.2 2.5e-06 27.1 0.1 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 AJD70150.1 - 0.027 13.8 0.0 3.8 6.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 AJD70150.1 - 0.15 11.0 0.0 0.29 10.0 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (K) TonB_dep_Rec PF00593.24 AJD70151.1 - 1.5e-51 176.8 18.7 1.5e-51 176.8 18.7 3.0 1 1 2 3 3 3 1 TonB dependent receptor Plug PF07715.15 AJD70151.1 - 7.2e-23 81.2 1.5 1.9e-22 79.9 1.5 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain SLT PF01464.20 AJD70152.1 - 2.7e-25 88.3 0.0 4.7e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Transglycosylase SLT domain SLT_L PF14718.6 AJD70152.1 - 3.4e-10 39.9 0.5 3.4e-10 39.9 0.5 2.9 3 0 0 3 3 3 1 Soluble lytic murein transglycosylase L domain HRDC PF00570.23 AJD70152.1 - 0.52 10.3 2.4 57 3.8 0.8 3.5 3 0 0 3 3 3 0 HRDC domain Pec_lyase_C PF00544.19 AJD70153.1 - 2.7e-58 197.0 4.2 4.4e-58 196.3 4.2 1.3 1 0 0 1 1 1 1 Pectate lyase Acetyltransf_1 PF00583.25 AJD70154.1 - 9.7e-15 54.8 0.0 1.2e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AJD70154.1 - 6.9e-13 48.7 0.0 8.6e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AJD70154.1 - 1.5e-10 41.4 0.0 2e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD70154.1 - 3.7e-07 30.0 0.0 5.1e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 AJD70154.1 - 3.5e-06 27.2 0.1 5.4e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AJD70154.1 - 0.00085 20.0 0.0 0.0011 19.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 AJD70154.1 - 0.0016 18.1 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AJD70154.1 - 0.0068 16.5 0.0 0.0089 16.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AJD70154.1 - 0.054 13.6 0.0 0.091 12.8 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_III_psi PF03603.13 AJD70155.1 - 0.023 15.0 0.0 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III psi subunit CDP-OH_P_transf PF01066.21 AJD70156.1 - 1.1e-14 55.0 1.1 1.1e-14 55.0 1.1 2.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4124 PF13511.6 AJD70157.1 - 5.5e-16 58.6 0.9 1.3e-15 57.5 0.9 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4124) tRNA-synt_2b PF00587.25 AJD70158.1 - 3.5e-44 150.9 0.0 4.6e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA_edit PF04073.15 AJD70158.1 - 1.1e-30 106.2 0.2 2.3e-30 105.2 0.2 1.6 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HGTP_anticodon PF03129.20 AJD70158.1 - 7.3e-13 48.5 0.0 1.7e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain Histone_HNS PF00816.21 AJD70159.1 - 3e-22 79.2 4.1 3e-22 79.2 4.1 2.0 2 0 0 2 2 2 1 H-NS histone family ThrE PF06738.12 AJD70160.1 - 5.8e-56 189.6 25.7 4.8e-51 173.5 4.1 2.0 2 0 0 2 2 2 2 Putative threonine/serine exporter ThrE_2 PF12821.7 AJD70160.1 - 2.1e-16 60.2 32.0 4.2e-12 46.3 10.8 2.5 3 0 0 3 3 3 2 Threonine/Serine exporter, ThrE MlaE PF02405.16 AJD70161.1 - 2.3e-67 226.8 14.4 2.9e-67 226.5 14.4 1.1 1 0 0 1 1 1 1 Permease MlaE STAS_2 PF13466.6 AJD70161.1 - 4.5e-05 23.7 1.6 0.00012 22.4 1.6 1.8 1 0 0 1 1 1 1 STAS domain ABC_tran PF00005.27 AJD70162.1 - 4.3e-31 108.2 0.0 5.6e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70162.1 - 3.5e-10 40.2 1.2 2.4e-07 30.9 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70162.1 - 0.0062 16.0 0.0 0.43 10.0 0.0 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 AJD70162.1 - 0.026 14.3 0.1 0.043 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD70162.1 - 0.028 14.8 1.6 0.074 13.4 1.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 AJD70162.1 - 0.069 13.4 0.2 0.19 12.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 AJD70162.1 - 0.19 10.9 0.1 0.28 10.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MlaD PF02470.20 AJD70163.1 - 8.2e-15 54.9 0.1 1.8e-14 53.8 0.1 1.6 1 0 0 1 1 1 1 MlaD protein DUF948 PF06103.11 AJD70163.1 - 0.029 14.6 4.5 5.8 7.3 0.6 3.4 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) HrpB7 PF09486.10 AJD70163.1 - 0.052 13.9 0.5 0.082 13.3 0.5 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Fib_alpha PF08702.10 AJD70163.1 - 0.062 13.5 0.1 0.39 10.9 0.6 1.8 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 AJD70163.1 - 0.079 13.4 7.1 0.13 12.8 1.2 3.1 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Prominin PF05478.11 AJD70163.1 - 0.09 10.7 0.2 0.15 10.0 0.2 1.3 1 0 0 1 1 1 0 Prominin Baculo_PEP_C PF04513.12 AJD70163.1 - 0.64 10.1 10.7 0.43 10.6 7.3 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_trans_aux PF03886.13 AJD70164.1 - 3.3e-35 121.0 1.8 4e-35 120.8 1.8 1.1 1 0 0 1 1 1 1 ABC-type transport auxiliary lipoprotein component 2OG-FeII_Oxy_2 PF13532.6 AJD70165.1 - 7.7e-38 130.6 0.0 8.7e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily DUF3592 PF12158.8 AJD70165.1 - 0.066 13.3 0.0 0.084 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) FTO_NTD PF12933.7 AJD70165.1 - 0.093 12.0 2.8 1.8 7.7 0.0 2.9 1 1 2 3 3 3 0 FTO catalytic domain ETF_QO PF05187.13 AJD70166.1 - 9.5e-44 147.8 1.1 2.2e-43 146.6 1.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S DAO PF01266.24 AJD70166.1 - 2.5e-10 40.5 0.2 9e-05 22.2 0.0 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD70166.1 - 5.6e-08 32.3 0.3 0.0034 16.5 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 AJD70166.1 - 8.3e-08 31.7 0.1 6e-07 28.9 0.1 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 AJD70166.1 - 5.7e-07 29.7 0.0 3.5e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 AJD70166.1 - 2.4e-05 23.6 0.1 3.5e-05 23.0 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 AJD70166.1 - 0.00048 19.5 0.0 0.00085 18.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 AJD70166.1 - 0.00069 18.9 0.0 0.00097 18.4 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 AJD70166.1 - 0.00099 17.9 0.0 0.0015 17.3 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 AJD70166.1 - 0.0013 18.1 0.1 0.0018 17.6 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD70166.1 - 0.002 18.6 0.0 0.68 10.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AJD70166.1 - 0.0088 15.3 0.3 0.016 14.5 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain Fer4_2 PF12797.7 AJD70166.1 - 0.014 15.5 10.2 0.63 10.3 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 AJD70166.1 - 0.014 15.5 5.4 0.027 14.6 5.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Mqo PF06039.15 AJD70166.1 - 0.02 13.5 0.0 0.028 13.0 0.0 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) NAD_binding_9 PF13454.6 AJD70166.1 - 0.021 14.8 0.1 0.07 13.1 0.1 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4_7 PF12838.7 AJD70166.1 - 0.029 14.9 8.9 0.035 14.7 6.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 AJD70166.1 - 0.1 12.8 5.9 0.19 12.0 5.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Glyco_tran_WbsX PF14307.6 AJD70167.1 - 7.7e-127 423.5 0.0 9.6e-127 423.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase WbsX RgpF PF05045.12 AJD70167.1 - 6.6e-37 127.4 0.0 8.7e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 Rhamnan synthesis protein F Sid-5 PF17204.3 AJD70167.1 - 0.17 12.1 0.1 11 6.2 0.0 3.3 4 0 0 4 4 4 0 Sid-5 family CoA_trans PF01144.23 AJD70168.1 - 6.5e-42 143.4 0.5 7.1e-42 143.3 0.5 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hyd_C PF13336.6 AJD70168.1 - 0.086 12.8 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Acetyl-CoA hydrolase/transferase C-terminal domain CoA_trans PF01144.23 AJD70169.1 - 1.2e-79 266.8 0.3 1.3e-79 266.6 0.3 1.0 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 AJD70169.1 - 0.019 13.3 0.1 0.023 13.0 0.1 1.1 1 0 0 1 1 1 0 Malonate decarboxylase, alpha subunit, transporter PGM_PMM_I PF02878.16 AJD70170.1 - 1.5e-34 118.7 0.0 2.6e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 AJD70170.1 - 4.5e-24 84.8 0.0 7.2e-24 84.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 AJD70170.1 - 6.1e-22 78.2 0.0 1.3e-21 77.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 AJD70170.1 - 2.2e-11 43.8 0.1 1.4e-10 41.2 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NTP_transferase PF00483.23 AJD70171.1 - 2.6e-77 259.8 0.0 6.4e-77 258.5 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.18 AJD70171.1 - 1.6e-74 248.8 1.8 2e-74 248.5 1.0 1.6 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 AJD70171.1 - 2.1e-12 46.5 0.2 5.2e-12 45.3 0.2 1.7 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 AJD70171.1 - 1.5e-08 35.1 0.9 1.5e-08 35.1 0.9 2.3 1 1 0 2 2 2 1 MobA-like NTP transferase domain DUF218 PF02698.17 AJD70171.1 - 0.006 16.6 0.2 0.024 14.7 0.1 2.2 2 1 1 3 3 3 1 DUF218 domain SRP54 PF00448.22 AJD70171.1 - 0.15 11.7 0.1 0.3 10.7 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UDPG_MGDP_dh_N PF03721.14 AJD70172.1 - 1.5e-31 109.4 0.0 2.8e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 AJD70172.1 - 5.3e-27 93.9 0.0 1.3e-26 92.6 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 AJD70172.1 - 1.2e-09 38.6 0.1 2.9e-07 30.9 0.0 2.5 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 AJD70172.1 - 0.0029 17.0 0.1 0.16 11.3 0.0 2.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 AJD70173.1 - 4.9e-108 360.6 0.0 5.4e-108 360.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 AJD70173.1 - 1.2e-18 67.5 0.0 1.6e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 AJD70173.1 - 4.4e-07 29.3 0.0 1.6e-05 24.2 0.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 AJD70173.1 - 1.1e-06 28.3 0.0 9.7e-06 25.2 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 AJD70173.1 - 6.6e-06 25.5 0.0 1.8e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 Male sterility protein Lipase_GDSL_2 PF13472.6 AJD70173.1 - 0.025 15.0 0.9 0.21 12.0 0.1 2.3 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Semialdhyde_dh PF01118.24 AJD70173.1 - 0.19 12.2 0.2 0.48 10.9 0.2 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain dTDP_sugar_isom PF00908.17 AJD70174.1 - 3.2e-72 241.7 0.0 3.6e-72 241.5 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.23 AJD70175.1 - 2.1e-72 243.7 0.0 2.5e-72 243.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 AJD70175.1 - 1.3e-09 38.6 0.0 1.5e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain GDP_Man_Dehyd PF16363.5 AJD70176.1 - 7.8e-102 341.1 0.0 8.9e-102 340.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 AJD70176.1 - 7.4e-70 235.1 0.0 9.8e-70 234.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AJD70176.1 - 2.2e-13 50.0 0.0 3.9e-13 49.1 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 AJD70176.1 - 2.7e-09 36.6 0.0 2.1e-08 33.7 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 AJD70176.1 - 4.4e-07 29.3 0.1 7.3e-06 25.3 0.0 2.3 2 0 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 AJD70176.1 - 9.5e-07 28.1 0.0 1.5e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 AJD70176.1 - 1.8e-05 24.3 0.1 0.18 11.3 0.0 2.7 2 1 0 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.6 AJD70176.1 - 0.0043 17.0 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding ETF PF01012.21 AJD70177.1 - 1.7e-41 142.1 6.3 2.1e-41 141.8 6.3 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 AJD70178.1 - 3.7e-35 119.8 0.9 3.7e-35 119.8 0.9 2.5 3 0 0 3 3 3 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 AJD70178.1 - 7.5e-34 117.2 14.4 1.1e-33 116.6 14.4 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain LPG_synthase_TM PF03706.13 AJD70179.1 - 6.2e-38 131.0 45.6 9.3e-38 130.4 45.6 1.3 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region UbiA PF01040.18 AJD70180.1 - 1e-21 77.4 16.1 2.3e-21 76.3 16.1 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family HAD PF12710.7 AJD70180.1 - 2.9e-06 27.8 0.1 0.001 19.5 0.1 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PqiA PF04403.13 AJD70180.1 - 0.061 13.2 9.3 0.19 11.5 9.3 1.8 1 0 0 1 1 1 0 Paraquat-inducible protein A FAD_binding_4 PF01565.23 AJD70181.1 - 4.8e-19 68.5 0.0 1.1e-18 67.3 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain adh_short PF00106.25 AJD70182.1 - 9.5e-31 106.8 0.2 1.2e-30 106.5 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD70182.1 - 2e-26 93.0 1.6 2.4e-26 92.7 1.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD70182.1 - 4.7e-06 26.6 0.8 6e-06 26.3 0.8 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD70184.1 - 1.2e-20 74.1 0.0 9.2e-20 71.1 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 AJD70184.1 - 1.1e-14 54.1 0.0 4.3e-11 42.3 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 AJD70184.1 - 3.2e-13 50.0 0.2 4.6e-13 49.5 0.2 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 AJD70184.1 - 4.3e-08 32.6 0.1 1.1e-06 28.0 0.1 2.6 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 AJD70184.1 - 2.7e-06 26.8 0.2 4.2e-06 26.1 0.2 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 AJD70184.1 - 5e-06 26.1 0.1 4.3e-05 23.1 0.2 2.0 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 AJD70184.1 - 7.3e-06 25.3 1.7 0.19 10.9 0.3 3.1 1 1 2 3 3 3 2 Male sterility protein Ldh_1_N PF00056.23 AJD70184.1 - 0.00018 21.7 0.5 0.00028 21.0 0.5 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.13 AJD70184.1 - 0.00081 19.0 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 AJD70184.1 - 0.0033 17.7 1.3 0.02 15.1 1.3 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 AJD70184.1 - 0.012 15.5 0.7 0.12 12.3 0.7 2.1 1 1 0 1 1 1 0 KR domain Amino_oxidase PF01593.24 AJD70185.1 - 1.5e-29 103.7 0.0 2e-29 103.2 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 AJD70185.1 - 1.4e-11 44.5 0.0 3.2e-11 43.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AJD70185.1 - 2.2e-11 44.0 0.0 1.4e-10 41.3 0.0 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 AJD70185.1 - 1.1e-05 25.9 0.1 0.00044 20.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD70185.1 - 2.7e-05 23.0 0.0 9.8e-05 21.2 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 AJD70185.1 - 0.00029 20.2 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 AJD70185.1 - 0.00062 19.2 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD70185.1 - 0.0021 17.2 0.0 0.021 13.9 0.0 2.2 3 0 0 3 3 3 1 FAD binding domain ApbA PF02558.16 AJD70185.1 - 0.0085 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 AJD70185.1 - 0.014 15.3 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 AJD70185.1 - 0.015 14.5 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 AJD70185.1 - 0.02 15.1 0.1 0.034 14.3 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 AJD70185.1 - 0.037 13.9 0.1 0.056 13.3 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 AJD70185.1 - 0.039 13.2 0.0 0.087 12.1 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AJD70185.1 - 0.045 13.0 0.0 0.1 11.9 0.0 1.5 2 0 0 2 2 2 0 Thi4 family GtrA PF04138.14 AJD70186.1 - 6.8e-23 81.1 10.6 9.2e-23 80.7 10.6 1.2 1 0 0 1 1 1 1 GtrA-like protein Abhydrolase_9_N PF15420.6 AJD70186.1 - 0.012 15.6 1.3 0.091 12.8 1.4 2.0 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus DUF3021 PF11457.8 AJD70186.1 - 0.019 15.3 8.3 0.61 10.4 3.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) FeoB_C PF07664.12 AJD70186.1 - 0.25 11.1 3.4 3 7.6 0.1 2.9 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus PhyH PF05721.13 AJD70188.1 - 2.3e-35 122.8 0.0 2.8e-35 122.5 0.0 1.1 1 0 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) Glycos_transf_2 PF00535.26 AJD70190.1 - 5.1e-49 166.4 0.2 3.4e-26 92.1 0.1 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70190.1 - 1.3e-26 93.9 0.5 3.3e-15 56.6 0.0 2.8 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 AJD70190.1 - 1.1e-14 54.6 0.0 5.2e-07 29.4 0.0 3.6 3 1 0 3 3 3 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 AJD70190.1 - 3.2e-11 43.5 3.5 4.8e-06 26.6 0.0 3.0 2 1 0 2 2 2 2 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 AJD70190.1 - 2e-06 27.4 2.2 0.00017 21.1 0.1 2.8 2 2 0 2 2 2 2 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 AJD70190.1 - 7.3e-05 23.2 0.4 0.097 13.2 0.1 2.7 2 1 0 2 2 2 2 Glycosyl transferase family 2 Glyco_transf_7C PF02709.14 AJD70190.1 - 0.0052 16.4 0.0 0.031 13.9 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase NTP_transf_3 PF12804.7 AJD70190.1 - 0.0053 17.1 3.7 0.71 10.2 0.5 2.7 1 1 1 2 2 2 2 MobA-like NTP transferase domain Glyco_tranf_2_5 PF13712.6 AJD70190.1 - 0.0066 16.2 0.0 0.24 11.1 0.0 2.5 3 0 0 3 3 3 1 Glycosyltransferase like family Methyltransf_25 PF13649.6 AJD70191.1 - 9.7e-07 29.4 0.4 8.4e-05 23.2 0.0 3.2 3 1 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD70191.1 - 9.3e-06 26.2 0.2 7.7e-05 23.3 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD70191.1 - 0.057 13.3 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Seryl_tRNA_N PF02403.22 AJD70191.1 - 6.8 7.0 10.1 14 5.9 0.3 2.7 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ABC_tran PF00005.27 AJD70192.1 - 1.1e-20 74.5 0.0 3.3e-20 73.0 0.0 1.8 1 1 0 1 1 1 1 ABC transporter Wzt_C PF14524.6 AJD70192.1 - 4.5e-15 55.9 0.0 1.7e-14 54.1 0.0 1.9 2 0 0 2 2 2 1 Wzt C-terminal domain AAA_21 PF13304.6 AJD70192.1 - 2.7e-05 24.1 3.5 0.00091 19.1 0.4 2.7 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AJD70192.1 - 9.9e-05 22.9 0.1 0.00014 22.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AJD70192.1 - 0.00054 19.8 0.0 0.00078 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD70192.1 - 0.0031 17.2 0.1 0.0061 16.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 AJD70192.1 - 0.0051 16.9 0.2 0.01 15.9 0.2 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 AJD70192.1 - 0.019 14.7 0.0 0.077 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AJD70192.1 - 0.021 14.4 0.1 0.82 9.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 AJD70192.1 - 0.023 14.6 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 AJD70192.1 - 0.036 13.5 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AJD70192.1 - 0.064 13.5 0.1 0.35 11.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AJD70192.1 - 0.089 13.2 0.1 0.17 12.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 AJD70192.1 - 0.13 11.2 0.1 0.19 10.7 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 AJD70192.1 - 0.13 12.2 0.6 5.3 6.9 0.3 2.2 2 0 0 2 2 2 0 NTPase ABC2_membrane PF01061.24 AJD70193.1 - 5.8e-23 81.4 22.6 5.8e-23 81.4 22.6 1.3 2 0 0 2 2 2 1 ABC-2 type transporter Cys_Met_Meta_PP PF01053.20 AJD70194.1 - 3.2e-155 516.4 0.0 3.7e-155 516.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 AJD70194.1 - 2.7e-06 26.9 0.1 4.1e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 AJD70194.1 - 3.7e-06 26.2 0.0 4.8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 AJD70194.1 - 0.00013 21.3 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.16 AJD70194.1 - 0.16 10.7 0.0 0.22 10.3 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein PALP PF00291.25 AJD70195.1 - 8.4e-63 212.5 0.1 1e-62 212.2 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CBS PF00571.28 AJD70195.1 - 3.7e-10 40.1 2.3 6.2e-06 26.6 0.3 2.8 2 0 0 2 2 2 2 CBS domain DUF465 PF04325.13 AJD70196.1 - 1.6e-11 44.0 0.8 3.3e-11 43.0 0.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF465) OmpA PF00691.20 AJD70197.1 - 0.0023 18.2 0.4 0.0023 18.2 0.4 2.5 2 1 0 2 2 2 1 OmpA family DUF4398 PF14346.6 AJD70198.1 - 1.6e-09 38.2 25.0 2.5e-09 37.6 25.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) bacHORMA_1 PF18138.1 AJD70198.1 - 0.0042 17.0 0.3 0.0053 16.6 0.3 1.2 1 0 0 1 1 1 1 Bacterial HORMA domain family 1 SMBP PF16785.5 AJD70198.1 - 0.024 14.8 3.4 0.046 13.9 3.4 1.6 1 1 0 1 1 1 0 Small metal-binding protein T3SS_TC PF06511.11 AJD70198.1 - 0.13 11.7 3.7 0.16 11.3 3.7 1.1 1 0 0 1 1 1 0 Type III secretion systems tip complex components T2SSE PF00437.20 AJD70199.1 - 9.7e-37 126.5 0.1 1.4e-36 125.9 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 AJD70199.1 - 6.2e-05 23.5 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 AJD70199.1 - 0.00071 19.0 0.4 0.0031 16.9 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_29 PF13555.6 AJD70199.1 - 0.0058 16.3 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AJD70199.1 - 0.009 16.3 0.5 0.024 14.9 0.5 2.0 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 AJD70199.1 - 0.0094 16.1 0.9 0.016 15.3 0.9 1.5 1 1 0 1 1 1 1 Helicase HerA, central domain Zeta_toxin PF06414.12 AJD70199.1 - 0.01 15.2 0.1 0.025 13.8 0.1 1.8 1 1 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 AJD70199.1 - 0.015 15.7 0.2 0.032 14.6 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 AJD70199.1 - 0.017 14.8 0.2 0.04 13.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AJD70199.1 - 0.031 14.4 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 AJD70199.1 - 0.037 13.5 0.0 0.08 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_8 PF12780.7 AJD70199.1 - 0.065 12.5 0.4 0.27 10.5 0.0 2.1 3 0 0 3 3 3 0 P-loop containing dynein motor region D4 ATP_bind_1 PF03029.17 AJD70199.1 - 0.079 12.7 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SOCS_box PF07525.16 AJD70199.1 - 0.093 13.1 0.1 0.23 11.9 0.1 1.6 1 0 0 1 1 1 0 SOCS box Viral_helicase1 PF01443.18 AJD70199.1 - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA PF00004.29 AJD70199.1 - 0.13 12.7 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 AJD70199.1 - 0.13 11.8 0.3 0.43 10.2 0.2 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 AJD70199.1 - 0.14 12.2 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AJD70199.1 - 0.17 12.4 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 AJD70199.1 - 0.17 12.2 0.5 0.45 10.8 0.5 1.8 1 1 0 1 1 1 0 AAA domain GST_N_3 PF13417.6 AJD70200.1 - 5.3e-12 46.0 0.0 9.8e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AJD70200.1 - 7.9e-12 45.4 0.0 1.3e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD70200.1 - 3.4e-11 43.3 0.0 5.4e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD70200.1 - 1.1e-06 28.6 1.8 4.5e-06 26.6 0.6 2.5 2 1 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD70200.1 - 0.0037 17.5 0.0 0.0074 16.5 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Tom37 PF10568.9 AJD70200.1 - 0.0042 17.4 0.0 0.0082 16.5 0.0 1.4 1 0 0 1 1 1 1 Outer mitochondrial membrane transport complex protein GST_N_4 PF17172.4 AJD70200.1 - 0.019 15.7 0.0 0.03 15.0 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain GST_C_5 PF16865.5 AJD70200.1 - 0.07 13.7 0.0 0.14 12.8 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain FAA_hydrolase PF01557.18 AJD70201.1 - 4.7e-37 127.8 0.0 6.1e-37 127.4 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family FAA_hydro_N_2 PF18288.1 AJD70201.1 - 5.5e-27 94.0 0.0 1.2e-26 92.9 0.0 1.6 1 0 0 1 1 1 1 Fumarylacetoacetase N-terminal domain 2 DEAD PF00270.29 AJD70202.1 - 4.6e-50 169.8 0.0 1.6e-49 168.0 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD70202.1 - 8.7e-31 106.5 0.1 4e-29 101.2 0.1 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 AJD70202.1 - 4.6e-05 23.5 0.0 0.00013 22.0 0.0 1.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 AJD70202.1 - 0.00017 20.5 0.0 2.2 7.0 0.0 3.5 2 1 1 3 3 3 2 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_22 PF13401.6 AJD70202.1 - 0.031 14.5 3.4 0.11 12.7 1.8 2.7 2 1 0 2 2 2 0 AAA domain HEM4 PF02602.15 AJD70202.1 - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD TFR_dimer PF04253.15 AJD70203.1 - 7.2e-21 74.5 0.0 1.3e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Transferrin receptor-like dimerisation domain Peptidase_M28 PF04389.17 AJD70203.1 - 1.8e-18 66.9 0.0 8e-18 64.8 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 AJD70203.1 - 0.00015 21.6 0.0 0.00027 20.7 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Nicastrin PF05450.15 AJD70203.1 - 0.0031 17.0 0.0 0.0057 16.1 0.0 1.4 1 0 0 1 1 1 1 Nicastrin Peptidase_A2E PF12382.8 AJD70203.1 - 0.23 11.5 0.0 0.39 10.7 0.0 1.3 1 0 0 1 1 1 0 Retrotransposon peptidase TonB_dep_Rec PF00593.24 AJD70205.1 - 1.5e-52 180.1 27.8 1.5e-52 180.1 27.8 2.4 2 1 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70205.1 - 1.2e-23 83.7 3.7 2.6e-23 82.7 2.8 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70205.1 - 1.9e-05 23.8 2.1 3.4e-05 23.0 2.1 1.3 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family PTPS PF01242.19 AJD70206.1 - 3.3e-35 120.7 0.0 3.6e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Phasin_2 PF09361.10 AJD70207.1 - 1.7e-06 28.2 4.6 2.2e-06 27.8 4.6 1.2 1 0 0 1 1 1 1 Phasin protein YopE_N PF09020.10 AJD70207.1 - 0.052 13.8 0.0 0.23 11.7 0.0 1.8 1 1 1 2 2 2 0 YopE, N terminal AAA_26 PF13500.6 AJD70208.1 - 2e-37 128.9 0.0 2.3e-37 128.8 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AJD70208.1 - 7.3e-10 39.0 0.0 9.6e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 AJD70208.1 - 0.0071 15.7 1.3 0.07 12.4 0.1 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain TrwB_AAD_bind PF10412.9 AJD70208.1 - 0.098 11.5 0.1 0.14 11.0 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain GAF_2 PF13185.6 AJD70209.1 - 9.8e-12 45.4 0.3 1.2e-11 45.1 0.3 1.2 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 AJD70209.1 - 4e-08 34.0 0.0 5.9e-08 33.4 0.0 1.2 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.6 AJD70209.1 - 1.6e-05 25.2 0.0 2.1e-05 24.9 0.0 1.3 1 1 0 1 1 1 1 GAF domain TfoX_C PF04994.13 AJD70210.1 - 1.1e-25 89.5 0.0 1.5e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 TfoX C-terminal domain Cdd1 PF11731.8 AJD70210.1 - 0.092 13.0 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus Esterase PF00756.20 AJD70211.1 - 2.2e-14 53.7 0.1 4.5e-14 52.7 0.1 1.4 1 1 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 AJD70211.1 - 7.9e-07 28.8 0.0 1.2e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 AJD70211.1 - 8.2e-05 22.4 0.1 0.00014 21.6 0.1 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD70211.1 - 0.00053 19.3 0.0 0.00084 18.7 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Chlorophyllase2 PF12740.7 AJD70211.1 - 0.0011 18.0 0.0 0.0029 16.6 0.0 1.5 1 1 0 1 1 1 1 Chlorophyllase enzyme DUF1995 PF09353.10 AJD70211.1 - 0.1 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) TonB_dep_Rec PF00593.24 AJD70212.1 - 1.5e-62 213.0 26.8 1.5e-62 213.0 26.8 1.3 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD70212.1 - 5.5e-28 97.7 2.0 5.5e-28 97.7 2.0 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70212.1 - 4.6e-05 22.6 1.2 0.00034 19.7 1.1 2.1 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family HAD_2 PF13419.6 AJD70213.1 - 1.2e-36 126.5 0.0 1.5e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD70213.1 - 8.3e-24 85.0 0.0 4e-23 82.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AJD70213.1 - 1.7e-12 48.2 0.1 3.6e-12 47.1 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD70213.1 - 1.4e-10 41.1 0.0 2.4e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 AJD70213.1 - 2.9e-08 33.8 0.0 0.12 12.1 0.0 3.1 3 0 0 3 3 3 3 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AJD70213.1 - 2.8e-07 30.6 0.0 8.7e-05 22.6 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 AJD70213.1 - 0.016 14.7 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Put_Phosphatase PF06888.12 AJD70213.1 - 0.028 13.8 0.0 1.2 8.4 0.0 2.7 1 1 1 2 2 2 0 Putative Phosphatase Acid_PPase PF12689.7 AJD70213.1 - 0.17 11.8 0.0 20 5.0 0.0 2.2 2 0 0 2 2 2 0 Acid Phosphatase IMS PF00817.20 AJD70214.1 - 9.4e-53 178.2 0.1 1.5e-52 177.6 0.1 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 AJD70214.1 - 2.2e-17 63.9 0.1 5.7e-17 62.5 0.1 1.7 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 AJD70214.1 - 2.4e-05 24.4 0.0 5.4e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.8 AJD70214.1 - 0.006 16.8 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 AJD70214.1 - 0.051 13.8 0.0 0.14 12.4 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4332) FabA PF07977.13 AJD70215.1 - 8.5e-51 171.2 0.0 9.9e-51 171.0 0.0 1.0 1 0 0 1 1 1 1 FabA-like domain ketoacyl-synt PF00109.26 AJD70216.1 - 8.7e-46 156.5 5.8 1.3e-45 155.9 5.8 1.3 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 AJD70216.1 - 5e-25 87.8 0.1 4.6e-24 84.7 0.0 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 AJD70216.1 - 0.0012 18.3 1.4 0.027 13.8 0.7 2.2 1 1 1 2 2 2 2 Thiolase, N-terminal domain DUF697 PF05128.12 AJD70217.1 - 1.1 8.9 11.1 1.1 9.0 8.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF697) Peptidase_M3 PF01432.20 AJD70218.1 - 1.9e-142 475.8 0.0 3.1e-142 475.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M3 EcoEI_R_C PF08463.10 AJD70218.1 - 0.074 13.2 0.3 0.46 10.6 0.0 2.3 2 1 0 2 2 2 0 EcoEI R protein C-terminal Mobilization_B PF17511.2 AJD70218.1 - 0.35 11.2 3.9 1 9.7 2.7 2.5 1 1 1 2 2 2 0 Mobilization protein B PALP PF00291.25 AJD70219.1 - 4.6e-46 157.6 0.0 6.3e-46 157.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PepSY_TM PF03929.16 AJD70220.1 - 0.036 13.7 0.1 0.037 13.7 0.1 1.1 1 0 0 1 1 1 0 PepSY-associated TM region Cu-oxidase_3 PF07732.15 AJD70221.1 - 3.8e-48 162.4 0.2 1.8e-39 134.5 0.0 3.0 3 0 0 3 3 3 2 Multicopper oxidase Cu-oxidase PF00394.22 AJD70221.1 - 3e-35 121.7 0.0 3.5e-31 108.5 0.0 3.4 3 1 0 3 3 3 2 Multicopper oxidase Cu-oxidase_2 PF07731.14 AJD70221.1 - 3.9e-29 101.1 14.1 2.1e-26 92.3 1.0 3.6 3 1 0 3 3 3 2 Multicopper oxidase PhoD_N PF16655.5 AJD70221.1 - 0.018 15.6 0.0 0.4 11.3 0.0 2.5 2 0 0 2 2 2 0 PhoD-like phosphatase, N-terminal domain CopB PF05275.11 AJD70222.1 - 5.2e-83 277.7 1.6 6.5e-83 277.4 1.6 1.1 1 0 0 1 1 1 1 Copper resistance protein B precursor (CopB) Glyoxalase PF00903.25 AJD70223.1 - 2.8e-22 79.3 0.0 3.3e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 AJD70223.1 - 3.1e-08 33.8 0.0 5.3e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AJD70223.1 - 0.0054 17.5 0.0 0.0079 17.0 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 AJD70223.1 - 0.03 14.4 0.0 0.12 12.5 0.0 1.9 1 1 0 1 1 1 0 Glyoxalase-like domain CppA_N PF14506.6 AJD70223.1 - 0.21 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 CppA N-terminal PG_binding_1 PF01471.18 AJD70225.1 - 1.8e-17 63.3 3.2 4.6e-17 62.0 3.2 1.8 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 AJD70225.1 - 0.00019 21.6 1.7 0.21 11.9 0.2 2.7 1 1 1 2 2 2 2 Predicted Peptidoglycan domain PG_binding_2 PF08823.11 AJD70225.1 - 0.088 13.1 0.1 0.24 11.7 0.1 1.7 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Spore_coat_CotO PF14153.6 AJD70225.1 - 9.5 6.1 11.5 0.58 10.1 4.3 2.2 2 0 0 2 2 2 0 Spore coat protein CotO HAMP_N3 PF18575.1 AJD70226.1 - 0.14 11.7 0.0 0.35 10.5 0.0 1.7 1 0 0 1 1 1 0 HAMP N-terminal domain 3 SIS PF01380.22 AJD70229.1 - 2e-56 189.4 0.1 6.3e-28 97.2 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 AJD70229.1 - 2.1e-22 79.8 0.6 3.6e-22 79.0 0.6 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 AJD70229.1 - 1.5e-15 57.2 0.0 2.5e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 AJD70229.1 - 0.0021 17.0 0.2 0.0049 15.8 0.2 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II HlyD_D23 PF16576.5 AJD70230.1 - 4.6e-15 55.4 4.6 2.3e-10 40.1 0.4 2.2 2 0 0 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD70230.1 - 5.4e-14 52.8 2.5 9.3e-12 45.6 0.2 2.9 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD70230.1 - 1.2e-07 31.5 5.7 1.7e-07 31.0 0.1 3.6 3 1 0 3 3 3 1 Biotin-lipoyl like HlyD_2 PF12700.7 AJD70230.1 - 0.016 14.0 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 HlyD family secretion protein Biotin_lipoyl PF00364.22 AJD70230.1 - 0.055 13.3 0.6 3.5 7.5 0.1 2.8 2 1 0 2 2 2 0 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 AJD70230.1 - 0.12 12.1 0.2 4.3 7.1 0.0 2.6 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABC_tran PF00005.27 AJD70231.1 - 1.6e-29 103.1 0.0 2.9e-29 102.3 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 AJD70231.1 - 9.6e-11 42.0 0.3 8.8e-06 25.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70231.1 - 1.4e-06 27.9 0.0 0.0016 17.9 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 AJD70231.1 - 7.5e-06 25.2 0.0 0.00012 21.3 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 AJD70231.1 - 0.00011 22.7 0.8 0.00033 21.1 0.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD70231.1 - 0.0012 18.5 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AJD70231.1 - 0.0018 18.0 0.3 0.14 11.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AJD70231.1 - 0.0018 17.9 0.2 0.0098 15.5 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AJD70231.1 - 0.002 18.4 0.6 0.025 14.9 0.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AJD70231.1 - 0.002 18.7 0.0 0.11 13.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AJD70231.1 - 0.0022 18.2 0.1 0.0061 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AJD70231.1 - 0.011 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 AJD70231.1 - 0.013 15.4 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.17 AJD70231.1 - 0.014 15.2 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 AJD70231.1 - 0.019 14.4 0.1 4 6.7 0.1 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 AJD70231.1 - 0.019 15.2 0.2 0.15 12.3 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 AJD70231.1 - 0.021 14.2 0.1 0.92 8.8 0.0 2.1 2 0 0 2 2 2 0 KaiC APS_kinase PF01583.20 AJD70231.1 - 0.027 14.4 0.1 0.061 13.2 0.0 1.6 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_24 PF13479.6 AJD70231.1 - 0.046 13.4 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 AJD70231.1 - 0.053 12.9 0.1 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_23 PF13476.6 AJD70231.1 - 0.057 13.9 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrkA_N PF02254.18 AJD70231.1 - 0.066 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain DEAD PF00270.29 AJD70231.1 - 0.067 12.9 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_7 PF12775.7 AJD70231.1 - 0.089 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 AJD70231.1 - 0.1 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 AJD70231.1 - 0.12 11.9 0.4 0.36 10.4 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2249 PF10006.9 AJD70231.1 - 0.13 12.2 0.1 2.6 8.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) PRK PF00485.18 AJD70231.1 - 0.15 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Pox_A32 PF04665.12 AJD70231.1 - 0.21 11.0 0.1 0.34 10.3 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein MacB_PCD PF12704.7 AJD70232.1 - 9.1e-24 84.9 0.0 1.4e-23 84.3 0.0 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 AJD70232.1 - 4.4e-11 43.1 5.5 4.4e-11 43.1 5.5 2.6 2 1 1 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 AJD70233.1 - 9.2e-11 42.5 0.1 1.9e-10 41.4 0.1 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 AJD70233.1 - 3.8e-09 36.9 1.4 3.8e-09 36.9 1.4 2.7 3 0 0 3 3 3 1 FtsX-like permease family DUF2207 PF09972.9 AJD70233.1 - 0.33 9.7 0.9 0.54 8.9 0.9 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PDZ_2 PF13180.6 AJD70234.1 - 0.00015 22.0 0.2 0.00069 19.9 0.1 1.8 1 1 1 2 2 2 1 PDZ domain PDZ_6 PF17820.1 AJD70234.1 - 0.0042 16.9 0.6 0.038 13.8 0.1 2.1 2 0 0 2 2 2 1 PDZ domain C1q PF00386.21 AJD70234.1 - 0.25 11.6 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 C1q domain Sigma54_activat PF00158.26 AJD70235.1 - 6.6e-63 211.4 0.0 1e-62 210.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AJD70235.1 - 2.4e-20 73.0 0.0 1.2e-19 70.8 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain Response_reg PF00072.24 AJD70235.1 - 1.6e-18 66.9 0.0 3.3e-18 65.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 AJD70235.1 - 1.4e-16 61.0 0.0 2.4e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 AJD70235.1 - 1e-05 25.3 0.0 2.2e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 AJD70235.1 - 3e-05 24.0 0.0 0.00018 21.4 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain AAA_5 PF07728.14 AJD70235.1 - 9.7e-05 22.4 0.1 0.00044 20.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) HisKA PF00512.25 AJD70235.1 - 0.0002 21.3 0.2 0.001 19.1 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain AAA PF00004.29 AJD70235.1 - 0.001 19.5 0.0 0.0025 18.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HATPase_c_3 PF13589.6 AJD70235.1 - 0.0014 18.4 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Mg_chelatase PF01078.21 AJD70235.1 - 0.012 15.0 0.0 0.97 8.8 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FleQ PF06490.11 AJD70235.1 - 0.02 15.3 0.1 0.086 13.2 0.1 2.1 2 0 0 2 2 2 0 Flagellar regulatory protein FleQ Lipase_GDSL_2 PF13472.6 AJD70235.1 - 0.12 12.8 0.2 20 5.5 0.0 2.9 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Hexapep PF00132.24 AJD70236.1 - 4.1e-25 86.5 12.6 1.6e-08 34.0 0.6 5.0 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 AJD70236.1 - 1.3e-22 80.9 4.7 1.4e-22 80.7 3.9 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 AJD70236.1 - 2e-10 40.7 0.0 2.7e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 AJD70236.1 - 9.5e-10 38.1 15.7 3.3e-09 36.3 0.7 4.6 4 1 1 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 AJD70236.1 - 2e-07 31.0 0.3 4.3e-07 29.9 0.3 1.6 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 AJD70236.1 - 0.0011 19.0 0.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 1 Cytidylyltransferase CofC PF01983.16 AJD70236.1 - 0.0047 16.1 0.0 0.0073 15.5 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like DUF1416 PF07210.12 AJD70236.1 - 0.015 15.2 0.2 0.058 13.3 0.2 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1416) Nop16 PF09420.10 AJD70236.1 - 0.16 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 GtrA PF04138.14 AJD70237.1 - 5.9e-16 58.8 2.9 6.6e-16 58.6 2.9 1.0 1 0 0 1 1 1 1 GtrA-like protein CM_2 PF01817.21 AJD70238.1 - 4e-08 33.5 0.1 2.2e-07 31.1 0.0 2.1 2 0 0 2 2 2 1 Chorismate mutase type II DUF3253 PF11625.8 AJD70238.1 - 0.22 11.8 2.3 9.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) DinB_2 PF12867.7 AJD70238.1 - 0.28 11.7 3.6 0.52 10.8 3.4 1.7 1 1 0 1 1 1 0 DinB superfamily Alanine_zipper PF11839.8 AJD70238.1 - 4.4 7.7 10.7 0.3 11.5 3.4 2.2 2 0 0 2 2 2 0 Alanine-zipper, major outer membrane lipoprotein ATP-synt_DE_N PF02823.16 AJD70239.1 - 9.2e-28 96.0 0.5 1.5e-27 95.3 0.5 1.4 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_DE PF00401.20 AJD70239.1 - 4e-07 30.2 8.9 5.9e-07 29.6 8.9 1.3 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ATP-synt_ab PF00006.25 AJD70240.1 - 2.8e-61 206.9 0.0 5e-61 206.0 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 AJD70240.1 - 8.8e-18 64.6 1.4 1.8e-17 63.6 1.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 AJD70240.1 - 0.023 14.6 0.5 0.093 12.6 0.5 2.0 1 1 0 1 1 1 0 T3SS EscN ATPase C-terminal domain RNA_helicase PF00910.22 AJD70240.1 - 0.073 13.5 0.0 0.18 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ATP-synt PF00231.19 AJD70241.1 - 2.7e-97 325.8 3.0 3.3e-97 325.6 3.0 1.0 1 0 0 1 1 1 1 ATP synthase Ntox1 PF15500.6 AJD70241.1 - 0.044 14.1 1.6 1.5 9.2 0.2 2.2 2 0 0 2 2 2 0 Putative RNase-like toxin, toxin_1 ATP-synt_ab PF00006.25 AJD70242.1 - 1.2e-72 244.1 0.4 1.8e-72 243.4 0.4 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 AJD70242.1 - 3.4e-45 153.4 0.2 5.2e-45 152.8 0.2 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 AJD70242.1 - 1e-11 45.2 0.3 2.3e-11 44.0 0.3 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 AJD70242.1 - 9.1e-06 25.7 0.2 2.2e-05 24.5 0.2 1.6 1 0 0 1 1 1 1 HAS barrel domain ATPase PF06745.13 AJD70242.1 - 0.00034 20.0 0.1 0.00067 19.1 0.1 1.5 1 0 0 1 1 1 1 KaiC OSCP PF00213.18 AJD70243.1 - 4.8e-44 150.5 0.0 5.4e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit ATP-synt_B PF00430.18 AJD70244.1 - 9.6e-29 100.1 21.2 1.2e-28 99.8 21.2 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) HrpE PF06188.12 AJD70244.1 - 0.002 18.0 16.8 0.0025 17.7 16.8 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.13 AJD70244.1 - 0.018 15.7 7.1 0.018 15.7 7.1 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.18 AJD70244.1 - 0.049 13.5 16.4 0.062 13.2 16.4 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Glycos_transf_N PF04413.16 AJD70244.1 - 0.051 13.2 0.8 0.099 12.3 0.5 1.6 1 1 1 2 2 2 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YkyA PF10368.9 AJD70244.1 - 0.25 11.0 12.5 0.49 10.0 11.9 1.6 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Prominin PF05478.11 AJD70244.1 - 0.26 9.2 2.1 0.31 9.0 2.1 1.1 1 0 0 1 1 1 0 Prominin DivIVA PF05103.13 AJD70244.1 - 0.27 11.3 18.5 0.44 10.6 18.2 1.5 1 1 0 1 1 1 0 DivIVA protein LMBR1 PF04791.16 AJD70244.1 - 0.49 9.2 2.1 0.61 8.9 2.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein YtxH PF12732.7 AJD70244.1 - 3.6 8.2 8.4 19 5.9 8.4 2.2 1 1 0 1 1 1 0 YtxH-like protein V-ATPase_G PF03179.15 AJD70244.1 - 4.9 7.7 23.3 5.6 7.6 8.4 2.1 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit ATP-synt_C PF00137.21 AJD70245.1 - 2.8e-08 34.0 11.8 3.9e-08 33.5 11.8 1.2 1 0 0 1 1 1 1 ATP synthase subunit C DUF751 PF05421.11 AJD70245.1 - 0.02 15.6 3.9 0.092 13.5 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF751) FtsX PF02687.21 AJD70245.1 - 2.7 8.5 10.5 8.1 7.0 1.7 2.0 1 1 1 2 2 2 0 FtsX-like permease family ATP-synt_A PF00119.20 AJD70246.1 - 1e-54 185.7 21.8 1.3e-54 185.4 21.8 1.1 1 0 0 1 1 1 1 ATP synthase A chain OMP_b-brl PF13505.6 AJD70248.1 - 7.7e-06 26.1 6.6 0.00018 21.7 3.0 2.8 1 1 1 2 2 2 2 Outer membrane protein beta-barrel domain DUF732 PF05305.14 AJD70248.1 - 0.17 12.3 0.1 0.31 11.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF732) Pyr_redox_2 PF07992.14 AJD70250.1 - 3.3e-67 226.8 2.8 3.3e-67 226.8 2.8 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AJD70250.1 - 5.9e-35 119.9 0.5 5.9e-35 119.9 0.5 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 AJD70250.1 - 2.1e-22 79.5 10.0 8.7e-22 77.5 0.5 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Biotin_lipoyl PF00364.22 AJD70250.1 - 4.5e-20 71.3 2.0 4.5e-20 71.3 2.0 2.5 2 0 0 2 2 2 1 Biotin-requiring enzyme Pyr_redox_3 PF13738.6 AJD70250.1 - 3.4e-12 46.2 5.0 4.5e-10 39.3 0.0 2.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AJD70250.1 - 1.3e-08 34.3 3.9 3.6e-06 26.3 1.0 3.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 AJD70250.1 - 2.2e-07 30.6 0.9 2.2e-07 30.6 0.9 3.4 4 0 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD70250.1 - 1.5e-06 28.4 7.4 0.0012 19.0 0.5 3.6 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 AJD70250.1 - 1.9e-06 26.9 7.7 0.022 13.5 0.3 3.2 2 1 1 3 3 3 2 HI0933-like protein Thi4 PF01946.17 AJD70250.1 - 0.0001 21.7 1.5 0.0011 18.3 0.3 2.6 2 1 0 2 2 2 1 Thi4 family DAO PF01266.24 AJD70250.1 - 0.00013 21.7 13.3 0.079 12.5 0.2 4.2 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AJD70250.1 - 0.0002 20.6 10.4 0.0031 16.7 0.4 3.5 2 1 2 4 4 4 1 FAD binding domain AlaDh_PNT_C PF01262.21 AJD70250.1 - 0.00028 20.2 6.3 0.043 13.1 0.1 3.3 3 1 1 4 4 4 2 Alanine dehydrogenase/PNT, C-terminal domain Biotin_lipoyl_2 PF13533.6 AJD70250.1 - 0.001 18.8 4.5 3.4 7.6 0.1 4.2 3 1 1 4 4 4 1 Biotin-lipoyl like MCRA PF06100.11 AJD70250.1 - 0.0051 15.7 0.0 0.0077 15.1 0.0 1.1 1 0 0 1 1 1 1 MCRA family DUF478 PF04334.12 AJD70250.1 - 0.0082 16.2 0.1 0.016 15.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF478) 3HCDH_N PF02737.18 AJD70250.1 - 0.0091 15.9 2.3 0.024 14.5 0.3 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 AJD70250.1 - 0.013 14.7 13.3 0.19 10.9 0.1 3.8 3 1 1 4 4 4 0 FAD binding domain 2-Hacid_dh_C PF02826.19 AJD70250.1 - 0.018 14.4 0.1 0.33 10.3 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 AJD70250.1 - 0.062 12.6 0.1 0.26 10.5 0.1 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase RnfC_N PF13375.6 AJD70250.1 - 0.069 13.1 0.2 0.19 11.7 0.2 1.8 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 AJD70250.1 - 0.075 12.9 0.4 0.075 12.9 0.4 2.7 3 0 0 3 3 3 0 Glycine cleavage H-protein NAD_binding_7 PF13241.6 AJD70250.1 - 0.17 12.3 0.5 0.58 10.6 0.1 2.1 2 0 0 2 2 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 AJD70250.1 - 0.82 8.6 4.9 5.1 6.0 0.2 3.0 2 1 0 3 3 3 0 Lycopene cyclase protein 2-oxoacid_dh PF00198.23 AJD70252.1 - 3.8e-80 268.7 0.0 5.2e-80 268.2 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 AJD70252.1 - 2e-41 139.6 17.1 5.5e-21 74.2 3.4 2.7 3 0 0 3 3 3 2 Biotin-requiring enzyme E3_binding PF02817.17 AJD70252.1 - 4.6e-14 52.5 0.0 1.3e-13 51.0 0.0 1.9 1 0 0 1 1 1 1 e3 binding domain GCV_H PF01597.19 AJD70252.1 - 1.3e-08 34.8 5.3 0.00048 20.0 0.7 2.5 2 0 0 2 2 2 2 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 AJD70252.1 - 3.6e-06 26.7 18.1 0.098 12.5 0.9 4.7 2 2 2 4 4 4 4 Biotin-lipoyl like RnfC_N PF13375.6 AJD70252.1 - 1.2e-05 25.2 9.7 0.0065 16.4 1.2 2.7 2 0 0 2 2 2 2 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 AJD70252.1 - 0.00017 20.9 7.4 0.33 10.1 0.2 4.1 2 2 2 4 4 4 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD70252.1 - 0.0026 18.4 8.8 0.61 10.8 0.4 3.6 2 2 2 4 4 4 2 HlyD family secretion protein PYNP_C PF07831.13 AJD70252.1 - 0.011 15.4 5.4 7.3 6.3 0.1 4.2 2 2 2 4 4 4 0 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.11 AJD70252.1 - 0.011 15.2 3.3 1.1 8.7 0.3 2.4 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF2118 PF09891.9 AJD70252.1 - 0.037 14.0 1.2 2.9 7.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) DUF2254 PF10011.9 AJD70252.1 - 0.12 11.1 0.4 9.9 4.9 0.1 2.7 1 1 2 3 3 3 0 Predicted membrane protein (DUF2254) UN_NPL4 PF11543.8 AJD70252.1 - 0.13 12.7 0.3 20 5.8 0.1 2.4 2 0 0 2 2 2 0 Nuclear pore localisation protein NPL4 Peptidase_M23 PF01551.22 AJD70252.1 - 0.23 11.7 4.5 21 5.4 0.1 3.6 2 2 1 3 3 3 0 Peptidase family M23 YqfD PF06898.11 AJD70252.1 - 8.5 5.1 5.2 22 3.7 0.6 2.4 2 0 0 2 2 2 0 Putative stage IV sporulation protein YqfD DUF2884 PF11101.8 AJD70253.1 - 7.2e-39 133.6 0.0 1.3e-38 132.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2884) DUF5547 PF17701.1 AJD70253.1 - 0.17 11.7 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5547) DUF4226 PF10774.9 AJD70253.1 - 0.33 11.3 3.4 2 8.7 0.1 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4226) UDG PF03167.19 AJD70254.1 - 3.8e-12 46.4 0.0 4.7e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily OmpW PF03922.14 AJD70255.1 - 2.3e-38 132.0 0.0 3.3e-38 131.5 0.0 1.2 1 0 0 1 1 1 1 OmpW family OMP_b-brl PF13505.6 AJD70255.1 - 9.3e-10 38.9 11.8 1.9e-09 37.9 11.8 1.5 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain OprF PF05736.11 AJD70255.1 - 9.8e-07 28.7 0.1 1.5e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 OprF membrane domain DUF1453 PF07301.11 AJD70256.1 - 0.00017 21.6 13.5 0.0024 17.9 13.5 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1453) DUF2427 PF10348.9 AJD70256.1 - 0.16 11.8 6.4 0.097 12.5 3.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2427) SieB PF14163.6 AJD70256.1 - 0.41 10.1 6.4 0.19 11.2 3.3 1.9 2 0 0 2 2 2 0 Super-infection exclusion protein B TMEMspv1-c74-12 PF11044.8 AJD70256.1 - 0.77 9.8 2.1 1.1 9.3 0.1 2.1 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Lipoprotein_9 PF03180.14 AJD70258.1 - 1.1e-97 325.8 1.5 1.2e-97 325.6 1.5 1.0 1 0 0 1 1 1 1 NLPA lipoprotein Phosphonate-bd PF12974.7 AJD70258.1 - 5.6e-05 22.9 0.7 0.0065 16.1 0.1 2.2 2 0 0 2 2 2 2 ABC transporter, phosphonate, periplasmic substrate-binding protein Chorion_3 PF05387.11 AJD70258.1 - 0.044 13.4 0.5 0.069 12.8 0.5 1.3 1 0 0 1 1 1 0 Chorion family 3 BPD_transp_1 PF00528.22 AJD70259.1 - 1.3e-20 73.9 13.3 1.3e-20 73.9 13.3 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 AJD70260.1 - 1.3e-34 119.6 0.0 1.9e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter NIL PF09383.10 AJD70260.1 - 4.3e-19 68.1 0.4 9.4e-19 67.0 0.0 1.8 2 0 0 2 2 2 1 NIL domain AAA_21 PF13304.6 AJD70260.1 - 1.5e-05 25.0 1.3 0.079 12.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70260.1 - 2.5e-05 23.8 0.2 0.00097 18.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD70260.1 - 0.00042 20.8 0.9 0.0012 19.3 0.9 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AJD70260.1 - 0.00048 20.4 0.3 0.0095 16.2 0.4 2.6 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 AJD70260.1 - 0.0016 18.2 0.1 0.008 15.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AJD70260.1 - 0.0041 16.8 0.0 0.0093 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 AJD70260.1 - 0.01 16.1 0.1 0.1 12.9 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 AJD70260.1 - 0.01 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 AJD70260.1 - 0.019 15.5 0.0 0.033 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 AJD70260.1 - 0.023 15.1 0.1 0.36 11.2 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 AJD70260.1 - 0.03 14.4 0.0 0.069 13.2 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase TniB PF05621.11 AJD70260.1 - 0.078 12.4 0.1 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 AJD70260.1 - 0.092 12.9 0.1 0.18 12.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain EamA PF00892.20 AJD70261.1 - 1.9e-24 86.4 34.4 1.9e-15 57.2 11.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF3188 PF11384.8 AJD70261.1 - 0.3 10.8 11.4 0.21 11.3 1.1 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) DUF520 PF04461.13 AJD70262.1 - 2e-61 206.8 5.6 2.3e-61 206.6 5.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF520) Lip_prot_lig_C PF10437.9 AJD70262.1 - 0.022 14.7 0.2 0.082 12.9 0.1 2.2 1 1 1 2 2 2 0 Bacterial lipoate protein ligase C-terminus DUF5309 PF17236.2 AJD70262.1 - 0.1 11.9 1.4 0.15 11.4 1.4 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5309) Hpt PF01627.23 AJD70263.1 - 0.62 10.4 8.3 0.14 12.5 3.3 2.1 1 1 1 2 2 2 0 Hpt domain HATPase_c PF02518.26 AJD70264.1 - 1.3e-22 80.4 0.0 2.6e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD70264.1 - 9.2e-19 67.7 0.0 1.7e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AJD70264.1 - 2.3e-13 50.0 0.3 5.5e-13 48.8 0.3 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain CO_dh PF02552.16 AJD70264.1 - 0.13 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Abhydrolase_6 PF12697.7 AJD70265.1 - 2.8e-08 34.6 15.0 4e-08 34.1 15.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD70265.1 - 1.9e-07 30.6 0.1 3.8e-07 29.6 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 AJD70265.1 - 8.1e-06 25.7 0.1 1.4e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Putative esterase UPF0227 PF05728.12 AJD70265.1 - 3e-05 24.0 0.0 7.6e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) Abhydrolase_1 PF00561.20 AJD70265.1 - 0.00058 19.6 0.5 0.0011 18.6 0.2 1.8 2 1 0 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 AJD70265.1 - 0.002 18.1 0.0 0.003 17.5 0.0 1.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.16 AJD70265.1 - 0.0023 17.8 0.0 0.0068 16.2 0.0 1.7 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.21 AJD70265.1 - 0.0044 16.5 0.6 0.044 13.3 0.2 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 AJD70265.1 - 0.0056 16.6 0.7 0.013 15.4 0.5 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 AJD70265.1 - 0.018 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Dienelactone hydrolase family Peptidase_S28 PF05577.12 AJD70265.1 - 0.18 10.6 0.2 0.25 10.1 0.2 1.2 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF1415 PF07209.12 AJD70266.1 - 5.5e-71 237.8 0.0 6.1e-71 237.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1415) adh_short_C2 PF13561.6 AJD70267.1 - 7e-59 199.2 0.0 8.2e-59 199.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD70267.1 - 9.6e-42 142.7 0.0 1.1e-41 142.4 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD70267.1 - 3.1e-06 27.2 1.0 6.8e-06 26.1 1.0 1.5 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 AJD70267.1 - 0.26 11.2 0.2 0.37 10.6 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HAD_2 PF13419.6 AJD70268.1 - 1.7e-26 93.4 0.0 2e-26 93.2 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD70268.1 - 1.4e-13 51.7 0.1 1.2e-12 48.5 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD70268.1 - 9.4e-05 22.4 0.0 0.00045 20.2 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 AJD70268.1 - 0.0014 19.1 0.5 0.0018 18.7 0.5 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PseudoU_synth_2 PF00849.22 AJD70269.1 - 4.3e-15 56.1 0.0 1.2e-10 41.7 0.0 2.1 2 0 0 2 2 2 2 RNA pseudouridylate synthase S4 PF01479.25 AJD70269.1 - 0.0054 16.4 0.0 0.55 10.0 0.0 2.3 2 0 0 2 2 2 2 S4 domain MTS PF05175.14 AJD70270.1 - 4.8e-53 179.2 0.0 2e-52 177.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 AJD70270.1 - 2.9e-07 31.1 0.0 2e-06 28.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD70270.1 - 2.9e-05 24.7 0.0 8.9e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 AJD70270.1 - 7.2e-05 23.4 0.0 0.00029 21.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 AJD70270.1 - 0.0052 16.5 0.0 0.0097 15.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 AJD70270.1 - 0.0074 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS_N PF08468.11 AJD70270.1 - 0.0089 16.1 0.0 0.022 14.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain N-terminal Cons_hypoth95 PF03602.15 AJD70270.1 - 0.038 13.6 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 ADH_zinc_N PF00107.26 AJD70270.1 - 0.072 13.1 0.0 4.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase GSDH PF07995.11 AJD70272.1 - 7.2e-13 48.5 0.1 6.9e-12 45.3 0.0 2.3 2 1 0 2 2 2 1 Glucose / Sorbosone dehydrogenase NHL PF01436.21 AJD70272.1 - 0.00012 22.0 1.0 0.21 11.7 0.2 3.3 3 0 0 3 3 3 2 NHL repeat SGL PF08450.12 AJD70272.1 - 0.1 12.1 0.1 0.79 9.2 0.0 2.1 2 0 0 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region DUF3247 PF11607.8 AJD70273.1 - 1.4e-45 153.4 0.1 1.6e-45 153.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3247) KaiB PF07689.12 AJD70273.1 - 0.045 13.5 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 KaiB domain HATPase_c PF02518.26 AJD70274.1 - 7.1e-30 103.8 0.1 1.3e-29 102.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AJD70274.1 - 1.5e-22 79.8 0.0 6.7e-22 77.8 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 AJD70274.1 - 3.4e-18 65.9 6.9 5.8e-14 52.3 0.1 3.5 4 1 0 4 4 4 2 PAS fold PAS PF00989.25 AJD70274.1 - 1.3e-16 60.6 0.0 2e-13 50.3 0.0 3.2 2 1 1 3 3 3 2 PAS fold HisKA PF00512.25 AJD70274.1 - 5.6e-15 55.1 0.1 2.2e-14 53.2 0.1 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 AJD70274.1 - 1.7e-12 47.4 0.0 9.5e-11 41.8 0.0 3.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 AJD70274.1 - 1.8e-11 43.8 0.2 5.5e-06 26.3 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_9 PF13426.7 AJD70274.1 - 1.1e-10 41.7 0.0 5.2e-05 23.5 0.0 2.5 2 0 0 2 2 2 2 PAS domain HATPase_c_5 PF14501.6 AJD70274.1 - 0.0041 17.0 0.0 0.0081 16.0 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 AJD70274.1 - 0.008 16.1 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3016 PF11454.8 AJD70277.1 - 2.6e-51 173.0 0.1 6.1e-51 171.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3016) Ala_racemase_N PF01168.20 AJD70278.1 - 5.1e-66 222.5 0.0 6.5e-66 222.1 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 AJD70278.1 - 7.1e-40 135.7 0.0 1e-39 135.1 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain DAO PF01266.24 AJD70279.1 - 8.6e-73 245.9 2.2 1e-72 245.7 2.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AJD70279.1 - 7.8e-09 35.2 0.1 0.00011 21.6 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD70279.1 - 9.2e-09 35.7 0.0 2.4e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD70279.1 - 7.8e-08 32.4 0.3 1.6e-05 25.0 0.0 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 AJD70279.1 - 1.6e-06 27.9 0.5 7.2e-06 25.7 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.24 AJD70279.1 - 1.3e-05 24.5 3.2 0.00044 19.4 3.2 2.2 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 AJD70279.1 - 8.6e-05 21.4 0.0 0.17 10.6 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein 3HCDH_N PF02737.18 AJD70279.1 - 0.00033 20.6 0.3 0.00064 19.7 0.1 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 AJD70279.1 - 0.00077 18.8 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 AJD70279.1 - 0.00083 18.7 0.4 0.0019 17.5 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 AJD70279.1 - 0.001 18.7 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.24 AJD70279.1 - 0.0013 18.2 0.0 0.12 11.7 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 AJD70279.1 - 0.0034 16.8 1.9 2.1 7.6 1.1 2.9 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 AJD70279.1 - 0.01 14.8 0.7 3 6.6 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_7 PF13241.6 AJD70279.1 - 0.015 15.7 0.0 0.03 14.8 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 AJD70279.1 - 0.016 14.6 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 AJD70279.1 - 0.02 15.4 0.0 0.044 14.3 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain ThiF PF00899.21 AJD70279.1 - 0.028 13.8 0.2 0.045 13.1 0.2 1.2 1 0 0 1 1 1 0 ThiF family Pyr_redox_3 PF13738.6 AJD70279.1 - 0.03 13.6 0.0 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AJD70279.1 - 0.039 13.0 0.6 0.098 11.7 0.2 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A TP6A_N PF04406.14 AJD70279.1 - 0.074 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Type IIB DNA topoisomerase Shikimate_DH PF01488.20 AJD70279.1 - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 AJD70279.1 - 0.12 12.7 0.0 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain AsnC_trans_reg PF01037.21 AJD70280.1 - 1.4e-20 73.0 0.1 4.6e-20 71.4 0.0 1.8 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 AJD70280.1 - 2.9e-20 71.8 0.2 4.7e-20 71.1 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AJD70280.1 - 1.9e-19 68.9 0.4 2.9e-19 68.3 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 AJD70280.1 - 1.2e-06 28.4 0.0 2.1e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AJD70280.1 - 0.00093 19.2 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 AJD70280.1 - 0.0093 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 AJD70280.1 - 0.016 15.1 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 AJD70280.1 - 0.036 14.0 0.0 0.081 12.9 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 AJD70280.1 - 0.062 13.0 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 AJD70280.1 - 0.071 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain DDRGK PF09756.9 AJD70280.1 - 0.091 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain Sigma70_r4 PF04545.16 AJD70280.1 - 0.11 12.0 0.8 0.25 10.9 0.8 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 SelR PF01641.18 AJD70282.1 - 2.6e-46 156.6 0.0 3.3e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 SelR domain Auto_anti-p27 PF06677.12 AJD70282.1 - 0.066 13.4 0.3 1.8 8.8 0.0 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MliC PF09864.9 AJD70283.1 - 5.6e-09 35.8 0.0 7.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Membrane-bound lysozyme-inhibitor of c-type lysozyme MotA_ExbB PF01618.16 AJD70284.1 - 6.9e-09 35.5 0.0 1.3e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family PGF-CTERM PF18204.1 AJD70284.1 - 0.13 12.2 2.7 0.63 10.1 2.7 2.2 1 0 0 1 1 1 0 PGF-CTERM motif Cation_efflux PF01545.21 AJD70284.1 - 0.88 9.3 6.7 1.1 8.9 2.1 2.2 2 0 0 2 2 2 0 Cation efflux family DUF4203 PF13886.6 AJD70284.1 - 3.7 7.2 12.4 0.18 11.4 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4203) MotB_plug PF13677.6 AJD70285.1 - 1.3e-19 69.6 0.6 2.6e-19 68.6 0.1 1.8 2 0 0 2 2 2 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 AJD70285.1 - 4.5e-13 49.4 0.0 9.3e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 OmpA family CCDC106 PF15794.5 AJD70286.1 - 0.48 10.1 4.5 0.75 9.5 1.1 2.0 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 106 SAPS PF04499.15 AJD70286.1 - 2.1 7.0 4.8 2 7.1 4.8 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF4031 PF13223.6 AJD70287.1 - 1.4e-28 98.9 0.2 1.7e-28 98.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4031) HTH_AsnC-type PF13404.6 AJD70287.1 - 0.03 14.1 0.7 0.1 12.5 0.4 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rho_N PF07498.12 AJD70287.1 - 0.074 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain HTH_8 PF02954.19 AJD70287.1 - 0.2 11.5 1.7 0.22 11.3 0.1 2.0 2 1 1 3 3 3 0 Bacterial regulatory protein, Fis family DUF3297 PF11730.8 AJD70289.1 - 2.8e-36 123.2 0.1 3.2e-36 123.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3297) ABC2_membrane PF01061.24 AJD70290.1 - 5.9e-33 114.1 24.2 5.9e-33 114.1 24.2 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 AJD70290.1 - 7.4e-05 22.0 21.1 7.4e-05 22.0 21.1 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 AJD70291.1 - 1.3e-33 116.5 0.0 2.2e-33 115.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70291.1 - 5.5e-13 49.4 3.1 1.1e-07 32.0 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AJD70291.1 - 6e-05 23.6 0.2 0.00013 22.6 0.2 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AJD70291.1 - 6.7e-05 22.4 0.0 0.26 10.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 AJD70291.1 - 0.00018 21.3 0.0 0.036 13.8 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 AJD70291.1 - 0.00053 19.7 0.1 0.001 18.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.6 AJD70291.1 - 0.0012 19.5 0.0 0.0033 18.1 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_24 PF13479.6 AJD70291.1 - 0.0013 18.5 0.6 0.98 9.1 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 AJD70291.1 - 0.0017 18.8 0.0 0.019 15.4 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AJD70291.1 - 0.013 15.9 0.7 0.089 13.2 0.0 2.4 1 1 1 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 AJD70291.1 - 0.013 14.7 0.4 3.2 6.9 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain RsgA_GTPase PF03193.16 AJD70291.1 - 0.016 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF72 PF01904.18 AJD70291.1 - 0.02 15.0 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF72 TsaE PF02367.17 AJD70291.1 - 0.024 14.6 0.0 0.057 13.4 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 AJD70291.1 - 0.034 13.9 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 AJD70291.1 - 0.043 14.0 0.0 0.32 11.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 AJD70291.1 - 0.076 12.4 0.9 2.8 7.2 0.0 2.6 3 0 0 3 3 3 0 KaiC OSK PF17182.4 AJD70291.1 - 0.086 12.1 0.1 0.22 10.7 0.0 1.6 2 0 0 2 2 2 0 OSK domain Na_H_Exchanger PF00999.21 AJD70292.1 - 3.5e-66 223.6 39.0 4.2e-66 223.3 39.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Fasciclin PF02469.22 AJD70293.1 - 2.6e-33 115.0 0.1 3.3e-33 114.6 0.1 1.1 1 0 0 1 1 1 1 Fasciclin domain Glyco_hydro_65C PF03633.15 AJD70293.1 - 0.0084 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain DUF4130 PF13566.6 AJD70294.1 - 4.1e-43 146.9 2.1 6.1e-43 146.3 2.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 UDG PF03167.19 AJD70294.1 - 7e-36 123.6 0.0 1.3e-35 122.7 0.0 1.5 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2026 PF09641.10 AJD70294.1 - 0.044 13.4 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) Radical_SAM PF04055.21 AJD70295.1 - 1.6e-07 31.9 0.0 2.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 AJD70295.1 - 0.056 13.7 0.0 0.088 13.1 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain HHH_5 PF14520.6 AJD70295.1 - 0.12 13.0 0.0 0.25 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_3 PF12836.7 AJD70295.1 - 0.16 12.2 0.0 0.41 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif LigB PF02900.18 AJD70296.1 - 8.4e-46 156.2 0.0 1e-45 155.9 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GGDEF_2 PF17853.1 AJD70296.1 - 0.061 13.6 0.3 0.12 12.7 0.3 1.4 1 0 0 1 1 1 0 GGDEF-like domain DoxX PF07681.12 AJD70297.1 - 1.3e-18 67.3 13.8 1.3e-18 67.3 13.8 1.5 2 0 0 2 2 2 1 DoxX DUF417 PF04224.12 AJD70297.1 - 0.17 11.4 1.8 16 5.0 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF417 DoxX_3 PF13781.6 AJD70297.1 - 2.4 8.8 14.7 0.22 12.2 7.7 2.4 2 1 1 3 3 3 0 DoxX-like family LysR_substrate PF03466.20 AJD70298.1 - 9.4e-48 162.3 2.0 1.4e-47 161.7 2.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70298.1 - 9e-18 64.0 4.5 2.2e-17 62.7 4.5 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family FMN_red PF03358.15 AJD70299.1 - 4.1e-09 36.4 0.2 5.6e-09 35.9 0.2 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 AJD70299.1 - 9.6e-06 25.9 0.0 1.3e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.17 AJD70299.1 - 0.00016 21.4 1.0 0.00029 20.6 1.0 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 AJD70299.1 - 0.0039 17.4 0.0 0.0041 17.3 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin Aldo_ket_red PF00248.21 AJD70300.1 - 8.3e-74 248.4 0.0 1e-73 248.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Glycos_transf_2 PF00535.26 AJD70301.1 - 2.3e-16 60.1 0.0 3.1e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70301.1 - 1.2e-12 48.2 1.0 1.6e-12 47.8 1.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 AJD70301.1 - 8e-07 28.7 1.4 1.1e-06 28.3 0.3 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 AJD70301.1 - 1e-06 28.4 0.0 0.0005 19.6 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AJD70301.1 - 7.2e-05 23.2 0.2 0.00013 22.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Isochorismatase PF00857.20 AJD70301.1 - 0.02 15.1 0.5 0.034 14.3 0.5 1.4 1 0 0 1 1 1 0 Isochorismatase family SH3_16 PF18348.1 AJD70301.1 - 0.082 12.7 0.1 23 4.9 0.0 2.7 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain NTP_transf_3 PF12804.7 AJD70301.1 - 0.093 13.1 7.2 0.12 12.7 7.2 1.3 1 1 0 1 1 1 0 MobA-like NTP transferase domain Glyco_tranf_2_5 PF13712.6 AJD70301.1 - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family Peptidase_M13_N PF05649.13 AJD70302.1 - 4.4e-89 299.8 0.0 5.6e-89 299.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 AJD70302.1 - 3e-44 151.1 0.0 6.4e-44 150.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M60 PF13402.6 AJD70302.1 - 0.046 13.2 0.3 0.13 11.8 0.1 1.7 2 0 0 2 2 2 0 Peptidase M60, enhancin and enhancin-like DUF2236 PF09995.9 AJD70303.1 - 1.6e-53 182.3 9.7 1.6e-53 182.3 9.7 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2236) DnaG_DnaB_bind PF08278.11 AJD70303.1 - 0.039 14.5 0.3 0.89 10.2 0.3 2.3 1 1 0 1 1 1 0 DNA primase DnaG DnaB-binding DUF4173 PF13777.6 AJD70304.1 - 0.031 13.7 1.3 0.044 13.2 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) AA_permease_2 PF13520.6 AJD70306.1 - 4.2e-39 134.6 42.6 4.2e-39 134.6 42.6 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD70306.1 - 2.1e-32 112.4 35.5 2.7e-32 112.0 35.5 1.2 1 0 0 1 1 1 1 Amino acid permease Response_reg PF00072.24 AJD70308.1 - 7.4e-25 87.3 0.0 1.8e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain LytTR PF04397.15 AJD70308.1 - 6e-21 74.5 0.0 1.2e-20 73.5 0.0 1.5 1 0 0 1 1 1 1 LytTr DNA-binding domain His_kinase PF06580.13 AJD70309.1 - 2.1e-20 72.8 0.0 3.6e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 AJD70309.1 - 2.4e-05 24.8 0.0 8.5e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AJD70309.1 - 0.0007 19.6 0.3 0.0028 17.6 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain OAM_alpha PF16552.5 AJD70309.1 - 0.087 12.7 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 D-ornithine 4,5-aminomutase alpha-subunit DAO PF01266.24 AJD70310.1 - 6.1e-23 82.0 1.6 1.9e-17 63.9 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase TAT_signal PF10518.9 AJD70310.1 - 0.00095 18.9 3.0 0.00095 18.9 3.0 2.3 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence 2-Hacid_dh_C PF02826.19 AJD70310.1 - 0.0033 16.8 0.0 0.0052 16.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 AJD70310.1 - 0.0084 15.2 0.0 0.024 13.7 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 AJD70310.1 - 0.011 15.0 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AJD70310.1 - 0.045 13.6 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 AJD70310.1 - 0.047 13.9 0.4 0.2 11.9 0.2 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 AJD70310.1 - 0.13 11.4 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD70310.1 - 0.14 10.8 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein ApbA PF02558.16 AJD70310.1 - 0.18 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF892 PF05974.12 AJD70312.1 - 2.9e-61 206.1 4.8 3.3e-61 206.0 4.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) LUC7 PF03194.15 AJD70312.1 - 0.018 14.7 0.5 0.019 14.7 0.5 1.2 1 0 0 1 1 1 0 LUC7 N_terminus DUF1403 PF07183.11 AJD70312.1 - 0.025 14.2 0.1 0.036 13.6 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1403) Mn_catalase PF05067.12 AJD70313.1 - 5e-84 281.6 0.0 6e-84 281.4 0.0 1.0 1 0 0 1 1 1 1 Manganese containing catalase COQ7 PF03232.13 AJD70313.1 - 0.00033 20.5 0.0 0.47 10.2 0.0 2.3 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Rubrerythrin PF02915.17 AJD70313.1 - 0.066 13.6 0.0 5.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Rubrerythrin Ferritin PF00210.24 AJD70313.1 - 0.11 12.4 0.1 17 5.3 0.0 2.2 1 1 1 2 2 2 0 Ferritin-like domain CheR PF01739.18 AJD70316.1 - 1.1e-52 178.4 0.0 1.7e-52 177.7 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.6 AJD70316.1 - 1.6e-22 80.1 0.0 1.7e-20 73.5 0.3 2.9 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.14 AJD70316.1 - 1.7e-21 76.7 1.2 1.6e-20 73.6 0.1 3.0 2 0 0 2 2 2 1 HWE histidine kinase CheB_methylest PF01339.17 AJD70316.1 - 3.9e-17 62.5 0.1 9.6e-17 61.2 0.0 1.7 2 0 0 2 2 1 1 CheB methylesterase PAS_3 PF08447.12 AJD70316.1 - 4.5e-17 62.1 0.4 1.6e-16 60.4 0.1 2.1 2 0 0 2 2 1 1 PAS fold CheR_N PF03705.15 AJD70316.1 - 3.2e-13 49.2 0.5 9.9e-13 47.6 0.5 1.9 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_4 PF08448.10 AJD70316.1 - 2.8e-06 27.6 5.1 0.041 14.1 0.2 3.6 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 AJD70316.1 - 8.4e-06 25.8 0.3 0.0061 16.6 0.0 3.6 4 0 0 4 4 4 1 PAS fold HisKA_2 PF07568.12 AJD70316.1 - 0.0064 16.6 1.2 0.037 14.1 0.1 2.8 2 0 0 2 2 2 1 Histidine kinase HATPase_c_2 PF13581.6 AJD70316.1 - 0.012 15.6 0.0 0.037 14.0 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4071 PF13281.6 AJD70316.1 - 0.057 12.5 0.5 0.13 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4071) CENP-F_leu_zip PF10473.9 AJD70316.1 - 0.074 13.1 9.0 0.028 14.4 4.0 2.7 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HAD PF12710.7 AJD70316.1 - 0.077 13.4 0.2 0.5 10.7 0.2 2.4 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase MCC-bdg_PDZ PF10506.9 AJD70316.1 - 0.13 12.3 1.8 0.58 10.2 1.7 2.2 1 1 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome FmiP_Thoc5 PF09766.9 AJD70316.1 - 0.23 10.7 1.5 0.42 9.9 1.5 1.3 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 Golgin_A5 PF09787.9 AJD70316.1 - 0.29 10.6 6.5 0.26 10.7 1.7 2.4 2 0 0 2 2 2 0 Golgin subfamily A member 5 HAP1_N PF04849.13 AJD70316.1 - 0.37 10.0 7.6 0.034 13.4 2.7 1.6 2 0 0 2 2 2 0 HAP1 N-terminal conserved region Wtap PF17098.5 AJD70316.1 - 0.43 10.5 7.3 0.065 13.2 2.6 2.1 2 0 0 2 2 1 0 WTAP/Mum2p family KxDL PF10241.9 AJD70316.1 - 0.6 10.4 11.7 0.048 13.9 1.6 3.1 4 0 0 4 4 2 0 Uncharacterized conserved protein UPF0242 PF06785.11 AJD70316.1 - 0.71 9.9 6.0 13 5.9 2.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus bZIP_1 PF00170.21 AJD70316.1 - 0.94 9.6 4.6 1.9 8.6 2.4 2.4 1 1 1 2 2 2 0 bZIP transcription factor CLZ PF16526.5 AJD70316.1 - 1.6 9.2 6.7 1.3 9.4 0.1 3.5 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Lebercilin PF15619.6 AJD70316.1 - 2.8 7.6 9.3 0.21 11.2 2.8 2.3 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease TSC22 PF01166.18 AJD70316.1 - 4.1 7.8 5.9 37 4.7 1.7 2.8 1 1 1 2 2 2 0 TSC-22/dip/bun family JIP_LZII PF16471.5 AJD70316.1 - 6.6 7.0 11.3 0.92 9.7 5.6 2.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II HAUS-augmin3 PF14932.6 AJD70316.1 - 8.8 5.8 8.8 1.3 8.6 1.8 2.5 3 0 0 3 3 3 0 HAUS augmin-like complex subunit 3 Spc7 PF08317.11 AJD70316.1 - 9.3 5.0 8.3 0.59 9.0 3.0 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Response_reg PF00072.24 AJD70317.1 - 1.2e-05 25.5 0.0 1.3e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Cep57_CLD_2 PF14197.6 AJD70318.1 - 0.091 12.9 3.2 0.16 12.0 3.2 1.4 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 Sigma54_activat PF00158.26 AJD70319.1 - 2.2e-60 203.2 0.0 2.9e-60 202.8 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AJD70319.1 - 2.4e-19 69.8 0.0 8.3e-19 68.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 AJD70319.1 - 4.8e-15 55.7 0.0 1.3e-14 54.4 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain HTH_8 PF02954.19 AJD70319.1 - 1.7e-12 46.9 0.5 1.7e-12 46.9 0.5 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AJD70319.1 - 1.2e-06 28.6 0.0 2e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 AJD70319.1 - 0.00022 21.7 0.0 0.00047 20.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 AJD70319.1 - 0.00044 19.7 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 AJD70319.1 - 0.0024 18.3 0.1 0.0059 17.0 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain MCM PF00493.23 AJD70319.1 - 0.0041 16.2 0.0 0.0067 15.6 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain HTH_30 PF13556.6 AJD70319.1 - 0.0043 16.8 0.3 0.01 15.6 0.3 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 AJD70319.1 - 0.016 15.0 0.0 0.05 13.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 AJD70319.1 - 0.038 13.4 0.8 0.18 11.3 0.1 2.6 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 AJD70319.1 - 0.041 14.0 0.1 0.82 9.8 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_3 PF07726.11 AJD70319.1 - 0.043 13.7 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 AJD70319.1 - 0.13 11.3 0.0 0.52 9.3 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Cyt_bd_oxida_I PF01654.17 AJD70321.1 - 5.4e-150 499.7 26.0 6.1e-150 499.5 26.0 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 AJD70322.1 - 9.3e-94 314.2 39.2 1e-93 314.0 39.2 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF202 PF02656.15 AJD70322.1 - 0.063 13.7 0.7 0.063 13.7 0.7 5.0 3 1 0 3 3 3 0 Domain of unknown function (DUF202) TMEM132D_C PF15706.5 AJD70324.1 - 0.13 12.1 0.1 20 5.0 0.1 2.9 3 0 0 3 3 3 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term adh_short_C2 PF13561.6 AJD70325.1 - 1.6e-59 201.3 0.0 1.9e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD70325.1 - 6.3e-49 166.1 0.0 7.9e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD70325.1 - 7.3e-12 45.6 0.0 9.9e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 KR domain DUF3764 PF12594.8 AJD70325.1 - 0.097 12.7 0.1 2.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3764) DUF1776 PF08643.10 AJD70325.1 - 0.14 11.5 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) GDP_Man_Dehyd PF16363.5 AJD70325.1 - 0.22 10.9 0.0 0.38 10.1 0.0 1.4 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase GDP_Man_Dehyd PF16363.5 AJD70326.1 - 9.3e-58 196.2 0.0 1.4e-57 195.6 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 AJD70326.1 - 4.4e-53 180.2 0.0 5.5e-53 179.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 AJD70326.1 - 1.5e-14 53.7 0.0 9.6e-14 51.0 0.0 1.8 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 AJD70326.1 - 2.3e-13 49.9 0.0 3.3e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 AJD70326.1 - 1.8e-12 47.0 0.0 6.5e-12 45.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 AJD70326.1 - 2.9e-07 30.2 0.0 2.1e-06 27.4 0.0 2.2 2 1 0 2 2 2 1 short chain dehydrogenase NAD_binding_4 PF07993.12 AJD70326.1 - 1.8e-06 27.4 0.0 0.00014 21.2 0.0 2.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 AJD70326.1 - 2.1e-05 24.5 0.0 4.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 AJD70326.1 - 8.7e-05 22.2 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.10 AJD70326.1 - 0.0006 19.8 0.1 0.0028 17.6 0.1 1.9 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 AJD70326.1 - 0.0026 17.3 0.0 0.068 12.7 0.0 2.5 3 0 0 3 3 3 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 AJD70326.1 - 0.057 13.7 0.0 0.16 12.3 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Glyco_transf_4 PF13439.6 AJD70326.1 - 0.065 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Pyr_redox_2 PF07992.14 AJD70326.1 - 0.14 11.3 0.0 0.36 10.0 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AJD70326.1 - 0.21 11.5 0.0 0.32 10.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_trans_1_4 PF13692.6 AJD70327.1 - 8.6e-10 39.2 0.0 2.4e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 AJD70327.1 - 0.0014 18.2 0.0 0.0062 16.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 AJD70327.1 - 0.002 18.5 0.0 0.0035 17.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 GLF PF03275.13 AJD70328.1 - 4.5e-84 281.3 5.5 5.8e-84 280.9 5.5 1.1 1 0 0 1 1 1 1 UDP-galactopyranose mutase NAD_binding_8 PF13450.6 AJD70328.1 - 2.3e-16 59.8 0.5 4.5e-16 58.8 0.5 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 AJD70328.1 - 9.2e-06 25.3 1.8 0.0013 18.2 0.8 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 AJD70328.1 - 9.6e-06 26.1 0.2 0.0003 21.3 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD70328.1 - 1.3e-05 25.0 0.0 2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 AJD70328.1 - 0.00035 20.6 0.0 0.00077 19.5 0.0 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 AJD70328.1 - 0.0012 18.2 0.1 0.003 16.9 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 AJD70328.1 - 0.0015 17.9 0.1 0.0021 17.4 0.1 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 AJD70328.1 - 0.004 16.3 0.4 0.009 15.1 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 AJD70328.1 - 0.0087 15.1 0.0 0.016 14.2 0.0 1.5 1 0 0 1 1 1 1 Lycopene cyclase protein GMC_oxred_N PF00732.19 AJD70328.1 - 0.026 13.9 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 GMC oxidoreductase FAD_binding_3 PF01494.19 AJD70328.1 - 0.029 13.6 0.2 0.05 12.8 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain CRISPR_Cse1 PF09481.10 AJD70328.1 - 0.035 13.2 0.1 0.053 12.6 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) TrkA_N PF02254.18 AJD70328.1 - 0.037 14.3 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 AJD70328.1 - 0.048 13.3 0.6 0.1 12.2 0.2 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 AJD70328.1 - 0.084 11.6 0.1 0.41 9.3 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein Glyco_hydro_1 PF00232.18 AJD70329.1 - 0.054 11.9 0.1 0.13 10.7 0.0 1.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 1 ABC_tran PF00005.27 AJD70330.1 - 7.3e-34 117.2 0.0 1.2e-33 116.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AJD70330.1 - 3.5e-18 66.2 2.5 4.6e-18 65.8 2.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 AJD70330.1 - 2.2e-05 24.0 0.3 0.0024 17.4 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AJD70330.1 - 0.00036 20.2 0.3 0.013 15.3 0.1 2.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_21 PF13304.6 AJD70330.1 - 0.0024 17.7 0.1 0.036 13.9 0.0 2.0 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 AJD70330.1 - 0.0073 16.2 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 AJD70330.1 - 0.013 15.1 0.1 0.054 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 AJD70330.1 - 0.015 15.6 0.1 0.15 12.4 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AJD70330.1 - 0.018 14.8 1.2 0.061 13.0 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 AJD70330.1 - 0.021 15.2 0.9 0.086 13.2 0.9 2.1 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 AJD70330.1 - 0.026 14.6 0.0 0.084 13.0 0.0 1.9 2 0 0 2 2 1 0 50S ribosome-binding GTPase ABC_membrane_3 PF13748.6 AJD70330.1 - 0.03 13.6 0.1 0.071 12.3 0.1 1.5 1 0 0 1 1 1 0 ABC transporter transmembrane region ABC_ATPase PF09818.9 AJD70330.1 - 0.042 12.6 0.0 1.2 7.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.15 AJD70330.1 - 0.054 13.4 0.2 2.4 8.0 0.2 2.3 1 1 0 1 1 1 0 NTPase AAA_18 PF13238.6 AJD70330.1 - 0.064 13.8 0.0 0.18 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 AJD70330.1 - 0.083 11.7 0.1 0.13 11.1 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_23 PF13476.6 AJD70330.1 - 0.11 13.0 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AJD70330.1 - 0.12 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NfeD PF01957.18 AJD70330.1 - 0.2 12.0 3.3 65 4.0 0.0 4.1 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding DUF3606 PF12244.8 AJD70331.1 - 1.6e-16 59.9 0.2 1.9e-16 59.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3606) DnaB_2 PF07261.11 AJD70331.1 - 0.096 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Replication initiation and membrane attachment DUF4142 PF13628.6 AJD70332.1 - 7.5e-20 71.6 5.9 9.3e-20 71.3 5.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) DUF305 PF03713.13 AJD70332.1 - 0.00039 20.6 1.4 0.0035 17.5 1.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF305) TPR_21 PF09976.9 AJD70332.1 - 0.32 10.7 4.2 8.6 6.0 0.3 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat-like domain ADH_N PF08240.12 AJD70333.1 - 4.7e-29 100.5 0.0 9.4e-29 99.5 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AJD70333.1 - 2.2e-10 40.6 0.4 6.8e-10 39.0 0.1 1.9 1 1 1 2 2 2 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 AJD70333.1 - 2.1e-07 30.7 0.1 2.9e-06 27.1 0.0 2.5 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated FAD_binding_3 PF01494.19 AJD70333.1 - 0.00058 19.2 0.1 0.00087 18.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 AJD70333.1 - 0.0012 18.2 0.3 0.0019 17.5 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 AJD70333.1 - 0.0021 17.4 0.0 0.004 16.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 AJD70333.1 - 0.015 14.8 0.1 0.043 13.3 0.1 1.8 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus HI0933_like PF03486.14 AJD70333.1 - 0.059 12.1 0.0 0.078 11.7 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.6 AJD70333.1 - 0.12 11.6 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD70333.1 - 0.13 12.8 0.1 1.8 9.1 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF1926 PF09095.11 AJD70334.1 - 0.04 13.5 1.8 0.043 13.4 1.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1926) CxxCxxCC PF03692.15 AJD70335.1 - 3.5e-09 37.2 5.3 4.3e-09 36.9 5.3 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3348 PF11828.8 AJD70338.1 - 6.7e-84 281.4 12.2 7.5e-84 281.3 12.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3348) PXA PF02194.15 AJD70338.1 - 0.11 12.5 0.4 0.75 9.7 0.1 2.2 2 1 0 2 2 2 0 PXA domain DUF802 PF05650.11 AJD70339.1 - 9e-14 51.7 36.5 1.6e-08 34.8 16.2 6.2 3 1 5 8 8 8 3 Domain of unknown function (DUF802) MotA_ExbB PF01618.16 AJD70339.1 - 0.00097 18.9 1.9 0.00097 18.9 1.9 3.6 2 1 0 3 3 3 1 MotA/TolQ/ExbB proton channel family Apolipoprotein PF01442.18 AJD70339.1 - 0.21 11.5 37.3 18 5.2 35.4 3.2 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain CorA PF01544.18 AJD70339.1 - 7.9 5.7 8.0 0.83 8.9 1.4 2.2 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF802 PF05650.11 AJD70340.1 - 1.7e-29 102.0 74.9 1e-17 64.3 15.7 7.9 7 3 1 8 8 8 3 Domain of unknown function (DUF802) Apolipoprotein PF01442.18 AJD70340.1 - 3.5e-05 23.8 54.5 0.0016 18.3 25.2 3.5 1 1 2 3 3 3 3 Apolipoprotein A1/A4/E domain DUF1548 PF07579.11 AJD70340.1 - 0.1 13.0 2.6 0.16 12.3 0.2 2.6 2 2 1 3 3 3 0 Domain of Unknown Function (DUF1548) ECM11 PF15463.6 AJD70340.1 - 2.5 8.7 10.5 0.33 11.5 2.1 3.4 2 1 1 4 4 4 0 Extracellular mutant protein 11 Cyclin_C PF02984.19 AJD70340.1 - 2.7 8.1 15.2 0.084 13.0 2.3 3.5 2 1 1 3 3 3 0 Cyclin, C-terminal domain Q_salvage PF10343.9 AJD70340.1 - 3.6 7.1 9.4 0.7 9.4 1.2 2.9 1 1 2 3 3 3 0 Potential Queuosine, Q, salvage protein family DUF2894 PF11445.8 AJD70341.1 - 5.8e-59 199.7 3.4 5.8e-59 199.7 3.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2894) MotB_plug PF13677.6 AJD70341.1 - 0.18 11.4 0.0 0.43 10.2 0.0 1.6 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB TonB_dep_Rec PF00593.24 AJD70342.1 - 3.2e-62 212.0 14.1 3.2e-62 212.0 14.1 1.6 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70342.1 - 8e-17 61.8 2.2 9e-17 61.6 0.3 2.1 2 1 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70342.1 - 0.036 13.0 0.0 0.07 12.1 0.0 1.4 1 0 0 1 1 1 0 Outer membrane protein beta-barrel family DUF3526 PF12040.8 AJD70343.1 - 2.6e-33 115.7 11.0 4.1e-33 115.1 11.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3526) ABC2_membrane_2 PF12679.7 AJD70343.1 - 3.4e-06 26.6 2.7 4e-06 26.3 2.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3526 PF12040.8 AJD70344.1 - 1.2e-47 162.3 4.9 1.2e-47 162.3 4.9 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF3526) ABC2_membrane_2 PF12679.7 AJD70344.1 - 2.7e-23 82.7 3.7 5.6e-23 81.6 3.7 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 AJD70344.1 - 7.1e-07 28.7 0.7 1.5e-06 27.6 0.7 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 AJD70344.1 - 0.00012 22.1 0.8 0.00042 20.3 0.4 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 AJD70344.1 - 0.064 12.7 4.6 0.043 13.2 2.6 1.7 2 0 0 2 2 2 0 ABC-2 type transporter OppC_N PF12911.7 AJD70344.1 - 0.32 11.0 0.0 0.32 11.0 0.0 3.5 3 1 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF4064 PF13273.6 AJD70344.1 - 0.68 10.3 3.4 26 5.2 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) ABC_tran PF00005.27 AJD70345.1 - 1.7e-24 86.9 0.0 2.1e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70345.1 - 3.4e-13 50.1 0.0 2.1e-09 37.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70345.1 - 0.0015 18.0 0.1 0.069 12.6 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Peptidase_M14 PF00246.24 AJD70346.1 - 2.9e-21 76.5 0.0 3.9e-20 72.8 0.0 2.1 1 1 0 1 1 1 1 Zinc carboxypeptidase LysR_substrate PF03466.20 AJD70347.1 - 1.1e-40 139.3 2.8 1.5e-40 138.8 2.8 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70347.1 - 1.2e-18 66.8 3.4 2.6e-18 65.7 3.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 AJD70347.1 - 0.0068 16.2 1.8 0.011 15.5 0.4 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain ExbD PF02472.16 AJD70347.1 - 0.03 14.5 0.0 0.047 13.9 0.0 1.3 1 0 0 1 1 1 0 Biopolymer transport protein ExbD/TolR MarR_2 PF12802.7 AJD70347.1 - 0.039 13.9 0.2 0.11 12.4 0.2 1.7 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 AJD70347.1 - 0.066 13.3 0.1 0.67 10.1 0.1 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD70347.1 - 0.079 12.8 0.8 0.21 11.4 0.8 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Ribonuc_L-PSP PF01042.21 AJD70348.1 - 2.9e-21 75.7 0.0 3.2e-21 75.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_Tnp_1 PF01527.20 AJD70350.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD70350.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70350.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD70350.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD70350.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD70350.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD70350.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD70350.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD70350.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD70350.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) rve PF00665.26 AJD70351.1 - 6.7e-26 90.8 0.0 1.3e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD70351.1 - 1.6e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD70351.1 - 1.5e-05 25.0 0.5 2.9e-05 24.1 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD70351.1 - 0.027 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 DDE domain PBP_like_2 PF12849.7 AJD70353.1 - 7.3e-08 32.4 0.2 8.6e-08 32.2 0.2 1.0 1 0 0 1 1 1 1 PBP superfamily domain Fmp27_GFWDK PF10347.9 AJD70353.1 - 0.01 16.0 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain SnoaL_3 PF13474.6 AJD70353.1 - 0.081 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like domain MCPsignal PF00015.21 AJD70354.1 - 1.1e-52 178.4 39.0 3.1e-52 176.9 19.8 3.7 3 2 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP_N3 PF18575.1 AJD70354.1 - 2.4e-16 59.0 0.1 1.9e-13 49.7 0.0 3.6 3 0 0 3 3 3 1 HAMP N-terminal domain 3 HAMP PF00672.25 AJD70354.1 - 5.8e-15 55.4 16.0 8.5e-10 38.9 1.1 7.5 7 1 1 8 8 8 2 HAMP domain Exonuc_VII_S PF02609.16 AJD70354.1 - 0.12 12.4 1.7 17 5.6 0.4 4.1 3 1 1 4 4 4 0 Exonuclease VII small subunit TM_helix PF05552.12 AJD70354.1 - 0.16 12.0 0.9 0.39 10.7 0.9 1.6 1 0 0 1 1 1 0 Conserved TM helix Fib_alpha PF08702.10 AJD70354.1 - 1.1 9.4 9.7 1.3 9.2 0.1 4.1 6 0 0 6 6 6 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 AJD70354.1 - 1.5 8.8 23.0 1.5 8.8 3.9 4.7 5 1 1 6 6 6 0 Laminin Domain II DUF2935 PF11155.8 AJD70354.1 - 2.8 8.3 10.4 16 5.8 0.0 4.4 3 2 0 3 3 3 0 Domain of unknown function (DUF2935) ISG65-75 PF11727.8 AJD70354.1 - 3 7.0 12.0 0.31 10.2 3.4 2.4 2 0 0 2 2 2 0 Invariant surface glycoprotein Tweety PF04906.13 AJD70354.1 - 5.9 5.4 13.7 9.4 4.8 0.5 3.7 4 0 0 4 4 4 0 Tweety DivIC PF04977.15 AJD70354.1 - 6.8 6.5 7.0 3.3 7.5 0.4 3.4 3 0 0 3 3 3 0 Septum formation initiator Endonuclease_NS PF01223.23 AJD70355.1 - 3.5e-36 125.1 0.0 4.6e-36 124.8 0.0 1.0 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease Endonuclea_NS_2 PF13930.6 AJD70355.1 - 0.0081 16.3 0.1 0.024 14.7 0.1 1.7 1 1 0 1 1 1 1 DNA/RNA non-specific endonuclease Abhydrolase_6 PF12697.7 AJD70356.1 - 1.1e-19 71.9 7.3 1.4e-19 71.6 7.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD70356.1 - 1.8e-08 33.9 2.6 1.1e-06 28.1 2.6 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 AJD70356.1 - 1.7e-07 31.1 0.0 2.5e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD70356.1 - 6.5e-05 22.7 2.3 0.25 11.0 0.1 3.1 1 1 1 3 3 3 2 alpha/beta hydrolase fold Ser_hydrolase PF06821.13 AJD70356.1 - 0.0019 18.0 0.9 0.065 13.1 0.9 2.2 1 1 0 1 1 1 1 Serine hydrolase PAF-AH_p_II PF03403.13 AJD70356.1 - 0.11 11.0 0.2 2.3 6.7 0.0 2.0 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II HTH_1 PF00126.27 AJD70357.1 - 2.2e-18 65.9 1.0 5.1e-18 64.8 1.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AJD70357.1 - 8.8e-17 61.2 0.9 1.9e-16 60.1 0.9 1.6 1 0 0 1 1 1 1 LysR substrate binding domain MarR_2 PF12802.7 AJD70357.1 - 0.0043 16.9 0.1 0.017 15.0 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 AJD70357.1 - 0.1 12.7 0.1 0.31 11.2 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain CsgE PF10627.9 AJD70357.1 - 0.23 11.7 0.0 0.34 11.1 0.0 1.3 1 0 0 1 1 1 0 Curli assembly protein CsgE Flavodoxin_2 PF02525.17 AJD70358.1 - 1.3e-43 149.0 0.0 1.6e-43 148.8 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 AJD70358.1 - 3.1e-09 36.8 0.0 4.3e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Fucose_iso_N2 PF07882.12 AJD70358.1 - 0.016 14.8 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 L-fucose isomerase, second N-terminal domain YCII PF03795.14 AJD70359.1 - 2.6e-05 24.5 0.0 3.1e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 YCII-related domain DUF3813 PF12758.7 AJD70360.1 - 0.1 13.0 1.7 0.19 12.1 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3813) DUF1653 PF07866.11 AJD70362.1 - 4.2e-25 87.8 0.0 4.6e-25 87.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1653) PIN_2 PF10130.9 AJD70365.1 - 0.007 16.6 0.0 0.0085 16.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain Peptidase_M24 PF00557.24 AJD70367.1 - 6.2e-47 160.0 0.3 7e-47 159.8 0.3 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 ParD_like PF11903.8 AJD70368.1 - 1.9e-24 85.5 0.0 2.1e-24 85.3 0.0 1.0 1 0 0 1 1 1 1 ParD-like antitoxin of type II bacterial toxin-antitoxin system RHS_repeat PF05593.14 AJD70369.1 - 1.3e-06 28.8 13.2 5e-05 23.7 6.4 2.4 1 1 0 2 2 2 2 RHS Repeat UPF0257 PF06788.13 AJD70369.1 - 0.033 14.0 0.1 0.041 13.7 0.1 1.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0257) Sigma70_ner PF04546.13 AJD70371.1 - 3.9e-50 170.6 1.7 3.9e-50 170.6 1.7 2.6 4 0 0 4 4 4 1 Sigma-70, non-essential region Sigma70_r3 PF04539.16 AJD70371.1 - 1.3e-30 105.3 0.7 1.3e-30 105.3 0.7 3.6 3 0 0 3 3 3 1 Sigma-70 region 3 Sigma70_r1_1 PF03979.14 AJD70371.1 - 1.5e-28 98.7 0.9 1.5e-28 98.7 0.9 2.8 2 0 0 2 2 2 1 Sigma-70 factor, region 1.1 Sigma70_r4 PF04545.16 AJD70371.1 - 7.2e-23 79.9 2.2 1.8e-19 68.9 0.5 3.0 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD70371.1 - 5.9e-22 77.2 0.3 1.9e-21 75.6 0.3 1.9 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r1_2 PF00140.20 AJD70371.1 - 1.3e-13 50.6 0.3 5.9e-13 48.6 0.3 2.2 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 CENP-H PF05837.12 AJD70371.1 - 9.6 6.7 10.0 0.48 10.9 2.6 2.6 3 0 0 3 3 3 0 Centromere protein H (CENP-H) Tyr_Deacylase PF02580.16 AJD70372.1 - 5.2e-51 173.0 0.0 5.7e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 D-Tyr-tRNA(Tyr) deacylase Lip_A_acyltrans PF03279.13 AJD70373.1 - 8.5e-46 156.4 0.0 1.1e-45 156.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase Acetyltransf_1 PF00583.25 AJD70374.1 - 2.3e-18 66.5 0.0 2.9e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 AJD70374.1 - 1.8e-17 63.9 0.0 1.9e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AJD70374.1 - 9.5e-11 42.5 0.0 1.2e-10 42.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD70374.1 - 7.5e-10 38.6 0.0 9.3e-09 35.1 0.0 2.1 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 AJD70374.1 - 2e-09 37.7 0.1 3.5e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJD70374.1 - 3.8e-09 36.6 0.0 4.8e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 AJD70374.1 - 1.1e-06 28.4 0.0 1.4e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 AJD70374.1 - 0.00019 21.5 0.0 0.00033 20.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 AJD70374.1 - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 AJD70374.1 - 0.09 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_9 PF13527.7 AJD70374.1 - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GTP_cyclohydro2 PF00925.20 AJD70375.1 - 3.6e-51 173.0 0.0 5e-51 172.5 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II bPH_2 PF03703.14 AJD70376.1 - 3.1e-15 56.1 0.1 4.5e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain Phage_holin_3_6 PF07332.11 AJD70376.1 - 0.07 13.2 3.4 0.12 12.4 3.4 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III bPH_2 PF03703.14 AJD70377.1 - 2.4e-46 155.8 0.2 1.1e-19 70.4 0.0 3.2 3 0 0 3 3 3 3 Bacterial PH domain Glyphos_transf PF04464.14 AJD70378.1 - 2.3e-09 36.7 0.0 8.8e-08 31.5 0.0 2.0 1 1 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Epimerase_2 PF02350.19 AJD70378.1 - 1.5e-08 33.9 0.0 2e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_2 PF00535.26 AJD70379.1 - 8.1e-16 58.3 0.1 1.2e-15 57.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 AJD70379.1 - 1.9e-06 28.3 1.0 5.5e-06 26.8 0.3 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70379.1 - 7.6e-06 26.0 0.3 1.3e-05 25.2 0.3 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 GED PF02212.18 AJD70379.1 - 0.13 12.4 0.1 0.29 11.3 0.1 1.5 1 0 0 1 1 1 0 Dynamin GTPase effector domain Wzy_C PF04932.15 AJD70380.1 - 4.4e-16 58.9 0.1 4.4e-16 58.9 0.1 3.8 2 1 3 5 5 5 3 O-Antigen ligase PMT_2 PF13231.6 AJD70381.1 - 8e-17 61.9 17.6 8e-17 61.9 17.6 2.9 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 AJD70381.1 - 5.6e-06 26.1 19.5 8e-06 25.6 18.7 1.7 1 1 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Methyltr_RsmB-F PF01189.17 AJD70382.1 - 7.8e-53 179.1 0.0 2.5e-52 177.5 0.0 1.7 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 AJD70382.1 - 1.4e-17 64.2 0.0 2.2e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 NusB family FtsJ PF01728.19 AJD70382.1 - 6.2e-06 26.4 0.0 1e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 AJD70382.1 - 5.6e-05 23.8 0.1 0.00039 21.1 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AJD70382.1 - 0.00011 22.0 0.0 0.00018 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AJD70382.1 - 0.00065 19.3 0.1 0.0033 17.0 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_12 PF08242.12 AJD70382.1 - 0.0039 17.9 0.0 0.026 15.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 AJD70382.1 - 0.0055 16.3 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 MraW methylase family Methyltransf_33 PF10017.9 AJD70382.1 - 0.045 12.9 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_24 PF13578.6 AJD70382.1 - 0.05 14.6 2.1 1 10.4 0.5 3.2 1 1 1 2 2 2 0 Methyltransferase domain Formyl_trans_N PF00551.19 AJD70383.1 - 4.7e-43 147.0 0.0 8.7e-43 146.2 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 AJD70383.1 - 1.9e-27 95.4 0.0 3.2e-27 94.7 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain Pep_deformylase PF01327.21 AJD70384.1 - 7.8e-53 178.3 0.0 8.8e-53 178.2 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase LysM PF01476.20 AJD70385.1 - 8.2e-15 54.6 0.1 2.5e-14 53.1 0.1 1.9 1 0 0 1 1 1 1 LysM domain DNA_processg_A PF02481.15 AJD70386.1 - 4.2e-74 248.3 0.0 6.6e-74 247.7 0.0 1.3 1 0 0 1 1 1 1 DNA recombination-mediator protein A DprA_WH PF17782.1 AJD70386.1 - 1.7e-15 56.8 1.0 4.7e-15 55.4 0.2 2.2 2 0 0 2 2 2 1 DprA winged helix domain LDcluster4 PF18306.1 AJD70386.1 - 0.17 11.5 4.8 0.79 9.3 4.8 1.9 1 1 0 1 1 1 0 SLOG cluster4 family DUF494 PF04361.13 AJD70387.1 - 2e-53 180.4 0.0 2.2e-53 180.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF494) Pilin PF00114.19 AJD70388.1 - 3.5e-16 60.1 0.0 4.8e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Pilin (bacterial filament) GYF_2 PF14237.6 AJD70388.1 - 8e-13 48.0 0.0 1.4e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 GYF domain 2 RDD PF06271.12 AJD70389.1 - 2.6e-21 76.3 6.0 2.6e-21 76.3 6.0 2.0 2 0 0 2 2 2 1 RDD family GYF_2 PF14237.6 AJD70389.1 - 9e-15 54.2 0.4 1.8e-14 53.2 0.4 1.5 1 0 0 1 1 1 1 GYF domain 2 DUF751 PF05421.11 AJD70389.1 - 0.068 13.9 0.1 0.068 13.9 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF751) DUF898 PF05987.13 AJD70389.1 - 0.096 11.7 10.5 0.058 12.4 5.3 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) P5-ATPase PF12409.8 AJD70389.1 - 0.1 12.7 1.8 0.58 10.3 0.4 2.3 2 0 0 2 2 2 0 P5-type ATPase cation transporter Topoisom_bac PF01131.20 AJD70390.1 - 5.7e-130 434.0 0.0 9.9e-130 433.2 0.0 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim_C_rpt PF13368.6 AJD70390.1 - 2.2e-44 149.3 1.5 3.4e-14 52.6 0.0 4.3 3 1 1 4 4 4 3 Topoisomerase C-terminal repeat Toprim PF01751.22 AJD70390.1 - 1.1e-26 93.0 0.1 2.9e-26 91.7 0.1 1.7 1 0 0 1 1 1 1 Toprim domain HC2 PF07382.11 AJD70390.1 - 0.00054 20.1 32.8 0.0012 19.0 32.8 1.6 1 0 0 1 1 1 1 Histone H1-like nucleoprotein HC2 Toprim_4 PF13662.6 AJD70390.1 - 0.02 15.3 0.0 0.075 13.5 0.0 2.0 1 0 0 1 1 1 0 Toprim domain Sua5_yciO_yrdC PF01300.18 AJD70391.1 - 1.3e-40 138.8 0.0 1.4e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF5631 PF18645.1 AJD70391.1 - 0.13 12.6 0.1 10 6.6 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5631) DUF4124 PF13511.6 AJD70392.1 - 0.19 12.1 21.8 1.5 9.2 1.9 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4124) DUF4124 PF13511.6 AJD70393.1 - 0.064 13.6 24.4 49 4.4 24.4 3.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4124) adh_short_C2 PF13561.6 AJD70394.1 - 5.4e-62 209.4 0.0 6.1e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD70394.1 - 6.8e-49 166.0 0.0 8.4e-49 165.7 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD70394.1 - 9.3e-11 42.0 0.3 1.2e-10 41.6 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD70394.1 - 0.0001 21.9 0.2 0.00041 19.9 0.2 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 AJD70394.1 - 0.015 14.5 0.0 0.022 13.9 0.0 1.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein 2-Hacid_dh_C PF02826.19 AJD70394.1 - 0.11 11.9 0.3 0.48 9.8 0.1 2.0 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peptidase_S49 PF01343.18 AJD70396.1 - 6.3e-72 240.6 0.6 2.2e-47 160.8 0.1 2.3 2 0 0 2 2 2 2 Peptidase family S49 SDH_sah PF01972.16 AJD70396.1 - 7.6e-07 28.4 4.5 1.3e-05 24.3 0.0 2.5 3 0 0 3 3 3 2 Serine dehydrogenase proteinase CLP_protease PF00574.23 AJD70396.1 - 0.0014 18.6 0.0 0.17 11.7 0.0 2.4 2 0 0 2 2 2 2 Clp protease MatE PF01554.18 AJD70397.1 - 5.5e-54 182.2 23.4 1.6e-29 102.6 8.2 2.3 2 0 0 2 2 2 2 MatE DUF3667 PF12412.8 AJD70398.1 - 9.3e-16 57.1 1.3 1.8e-15 56.1 1.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3667) C1_1 PF00130.22 AJD70398.1 - 0.41 10.6 4.2 0.74 9.7 4.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.6 AJD70398.1 - 0.72 9.8 4.5 1.2 9.0 4.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF3106 PF11304.8 AJD70399.1 - 2.9e-11 43.8 2.0 2.9e-11 43.8 2.0 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF3106) PepSY_TM PF03929.16 AJD70399.1 - 0.0083 15.8 0.5 0.0094 15.7 0.5 1.3 1 0 0 1 1 1 1 PepSY-associated TM region PriA_3primeBD PF17764.1 AJD70401.1 - 4.5e-22 77.7 0.0 8e-22 77.0 0.0 1.4 1 0 0 1 1 1 1 3′ DNA-binding domain (3′BD) PriA_C PF18074.1 AJD70401.1 - 3.1e-19 69.6 0.0 9e-19 68.1 0.0 1.9 1 0 0 1 1 1 1 Primosomal protein N C-terminal domain DEAD PF00270.29 AJD70401.1 - 2.2e-13 50.4 0.0 4.6e-13 49.3 0.0 1.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 AJD70401.1 - 8.4e-11 42.2 0.0 1.5e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 AJD70401.1 - 9.9e-10 38.8 0.0 1.3e-06 28.7 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain PriA_CRR PF18319.1 AJD70401.1 - 1.9e-07 30.9 5.1 1.9e-07 30.9 5.1 3.5 3 1 0 3 3 3 1 PriA DNA helicase Cys-rich region (CRR) domain SH3_16 PF18348.1 AJD70401.1 - 0.00053 19.7 0.0 0.0021 17.8 0.0 2.0 1 0 0 1 1 1 1 Bacterial dipeptidyl-peptidase Sh3 domain AAA_30 PF13604.6 AJD70401.1 - 0.0023 17.7 0.1 0.0054 16.5 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 AJD70401.1 - 0.055 13.8 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain zinc-ribbons_6 PF07191.12 AJD70401.1 - 0.17 11.9 3.1 0.37 10.8 3.1 1.5 1 0 0 1 1 1 0 zinc-ribbons zf-CHY PF05495.12 AJD70401.1 - 0.18 12.3 3.1 0.32 11.5 3.1 1.3 1 0 0 1 1 1 0 CHY zinc finger GST_N_3 PF13417.6 AJD70402.1 - 1.3e-14 54.4 0.0 2.4e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AJD70402.1 - 7.7e-14 51.8 0.0 1.6e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD70402.1 - 4.9e-11 42.8 0.0 8.2e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD70402.1 - 1.6e-06 28.1 0.6 3.5e-06 26.9 0.6 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD70402.1 - 2.6e-06 27.6 0.0 3.7e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain NYN PF01936.18 AJD70403.1 - 2e-31 109.5 0.0 3e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 NYN domain OST-HTH PF12872.7 AJD70403.1 - 2.1e-15 56.3 0.0 3.9e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 OST-HTH/LOTUS domain PIN7 PF18475.1 AJD70403.1 - 0.016 15.8 0.0 0.032 14.9 0.0 1.5 1 0 0 1 1 1 0 PIN domain DUF1344 PF07076.11 AJD70404.1 - 0.0051 16.7 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1344) SecE PF00584.20 AJD70404.1 - 0.61 10.1 3.7 1 9.3 3.7 1.3 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex LapA_dom PF06305.11 AJD70404.1 - 0.87 9.4 2.5 1.4 8.7 2.5 1.3 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Pyr_redox_2 PF07992.14 AJD70405.1 - 1.4e-55 188.6 0.0 1.7e-55 188.4 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD70405.1 - 2e-18 66.7 0.2 4.4e-12 46.4 0.1 3.3 2 2 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AJD70405.1 - 5.1e-09 36.2 9.1 7e-05 22.6 0.3 3.5 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 AJD70405.1 - 1.5e-06 28.3 1.6 0.16 12.0 0.0 3.5 3 1 0 3 3 3 3 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 AJD70405.1 - 1.8e-06 28.1 0.2 0.00077 19.6 0.0 3.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 AJD70405.1 - 2.1e-06 27.2 0.1 0.0032 16.7 0.0 2.6 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 AJD70405.1 - 5e-06 25.8 0.1 0.3 10.1 0.0 3.1 2 1 1 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 AJD70405.1 - 0.00057 18.7 0.0 0.045 12.5 0.0 3.0 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.12 AJD70405.1 - 0.0037 16.4 0.2 0.64 9.0 0.0 3.2 4 0 0 4 4 4 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 AJD70405.1 - 0.0057 15.8 0.9 0.012 14.8 0.0 2.0 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_3 PF13738.6 AJD70405.1 - 0.023 14.0 0.1 15 4.7 0.0 3.1 3 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AJD70405.1 - 0.098 11.9 0.1 0.58 9.4 0.0 2.3 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 AJD70405.1 - 0.12 12.6 0.0 3.9 7.8 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain UPF0126 PF03458.13 AJD70406.1 - 1e-40 137.5 21.2 3.2e-21 75.0 7.2 2.2 2 0 0 2 2 2 2 UPF0126 domain Sigma70_r2 PF04542.14 AJD70407.1 - 1.5e-16 59.9 0.0 2.8e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AJD70407.1 - 1.8e-15 56.2 0.4 1.3e-14 53.5 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r1_2 PF00140.20 AJD70407.1 - 1.7e-05 24.8 0.0 3.3e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 HTH_Tnp_ISL3 PF13542.6 AJD70407.1 - 0.0035 16.7 0.0 1 8.8 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 IF2_N PF04760.15 AJD70407.1 - 0.0081 16.0 0.2 0.84 9.5 0.0 2.7 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.12 AJD70407.1 - 0.014 15.3 0.4 0.075 13.0 0.1 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AJD70407.1 - 0.018 14.8 0.1 0.42 10.5 0.0 2.5 2 0 0 2 2 2 0 HTH DNA binding domain UCR_14kD PF02271.16 AJD70407.1 - 0.02 14.8 0.0 0.059 13.3 0.0 1.8 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase complex 14kD subunit HTH_3 PF01381.22 AJD70407.1 - 0.023 14.8 0.1 0.21 11.7 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix Phage_terminase PF10668.9 AJD70407.1 - 0.052 13.6 0.4 1.3 9.1 0.1 2.4 2 0 0 2 2 2 0 Phage terminase small subunit HTH_25 PF13413.6 AJD70407.1 - 0.069 13.0 0.4 0.39 10.6 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 AJD70407.1 - 0.11 12.3 0.2 0.36 10.6 0.1 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain KORA PF16509.5 AJD70407.1 - 0.12 12.6 0.4 0.81 10.0 0.1 2.2 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_31 PF13560.6 AJD70407.1 - 0.14 12.5 1.1 0.74 10.2 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain UDG PF03167.19 AJD70408.1 - 2.9e-24 85.8 0.0 4e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Response_reg PF00072.24 AJD70409.1 - 3.3e-32 111.0 0.4 5.3e-16 58.8 0.1 2.1 2 0 0 2 2 2 2 Response regulator receiver domain Peptidase_M55 PF04951.13 AJD70409.1 - 0.02 14.3 0.1 5.1 6.4 0.0 2.9 2 1 1 3 3 3 0 D-aminopeptidase SBP_bac_3 PF00497.20 AJD70409.1 - 0.1 12.0 0.1 0.69 9.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 FIST PF08495.10 AJD70409.1 - 0.15 12.1 0.1 0.41 10.6 0.0 1.7 2 1 0 2 2 2 0 FIST N domain FtsX_ECD PF18075.1 AJD70410.1 - 8.2e-14 52.0 0.0 1.1e-13 51.6 0.0 1.2 1 0 0 1 1 1 1 FtsX extracellular domain FtsX PF02687.21 AJD70410.1 - 2.9e-05 24.5 1.8 2.9e-05 24.5 1.8 2.5 3 0 0 3 3 3 1 FtsX-like permease family Lipoprotein_7 PF01540.16 AJD70410.1 - 0.31 10.3 0.0 0.38 10.0 0.0 1.1 1 0 0 1 1 1 0 Adhesin lipoprotein ABC_tran PF00005.27 AJD70411.1 - 5.3e-31 108.0 0.0 7.7e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70411.1 - 1.6e-08 34.7 0.5 1.6e-05 24.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AJD70411.1 - 5.9e-06 26.8 2.3 1.6e-05 25.4 2.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AJD70411.1 - 0.00031 20.4 0.1 0.00059 19.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AJD70411.1 - 0.00058 19.8 0.0 0.00098 19.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 AJD70411.1 - 0.00081 19.6 0.0 0.0019 18.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD70411.1 - 0.001 19.3 0.8 0.0076 16.5 0.8 2.6 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 AJD70411.1 - 0.0072 15.9 0.0 0.018 14.7 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain TniB PF05621.11 AJD70411.1 - 0.017 14.5 0.1 1.5 8.2 0.0 2.9 3 0 0 3 3 3 0 Bacterial TniB protein PIF1 PF05970.14 AJD70411.1 - 0.017 14.3 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_23 PF13476.6 AJD70411.1 - 0.022 15.2 0.0 0.031 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 AJD70411.1 - 0.026 14.0 0.0 0.064 12.7 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 AJD70411.1 - 0.053 12.8 0.0 0.081 12.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 AJD70411.1 - 0.071 13.0 0.1 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 AJD70411.1 - 0.075 12.7 0.1 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 AJD70411.1 - 0.13 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase Rad17 PF03215.15 AJD70411.1 - 0.2 11.5 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain DUF2075 PF09848.9 AJD70411.1 - 0.23 10.7 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RhlB PF12300.8 AJD70412.1 - 1.5e-78 262.9 37.4 2.8e-78 262.1 37.4 1.5 1 0 0 1 1 1 1 ATP-dependent RNA helicase RhlB DEAD PF00270.29 AJD70412.1 - 4.8e-47 160.0 0.0 2.9e-45 154.2 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD70412.1 - 1.3e-30 106.0 0.0 2.2e-28 98.8 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 AJD70412.1 - 0.016 15.2 0.0 0.041 13.9 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Glyco_transf_4 PF13439.6 AJD70412.1 - 0.018 15.0 0.8 6.1 6.8 0.1 2.8 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Thioredoxin PF00085.20 AJD70413.1 - 3.8e-32 110.3 0.0 4.2e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AJD70413.1 - 4.2e-09 36.8 0.0 3.1e-08 34.0 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 AJD70413.1 - 1.9e-08 34.5 0.0 6.4e-08 32.8 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 AJD70413.1 - 6.3e-06 26.1 0.0 7.3e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family TraF PF13728.6 AJD70413.1 - 2.5e-05 24.2 0.0 3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 AJD70413.1 - 3.7e-05 23.8 0.0 5.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 AJD70413.1 - 0.00017 21.3 0.0 0.00019 21.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.10 AJD70413.1 - 0.00089 19.0 0.0 0.0027 17.4 0.0 1.6 1 1 1 2 2 2 1 Redoxin HyaE PF07449.11 AJD70413.1 - 0.0065 16.4 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.6 AJD70413.1 - 0.0099 15.9 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 AJD70413.1 - 0.033 14.6 0.0 0.041 14.3 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 AJD70413.1 - 0.051 12.9 0.0 0.059 12.7 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Glutaredoxin PF00462.24 AJD70413.1 - 0.086 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin Rho_RNA_bind PF07497.12 AJD70414.1 - 4.7e-28 96.9 0.0 1.7e-27 95.1 0.0 2.0 2 0 0 2 2 2 1 Rho termination factor, RNA-binding domain ATP-synt_ab PF00006.25 AJD70414.1 - 2.5e-22 79.6 0.3 3.7e-22 79.0 0.3 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_N PF07498.12 AJD70414.1 - 4.9e-13 48.8 0.9 8.9e-13 47.9 0.2 1.8 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain NACHT PF05729.12 AJD70414.1 - 0.00034 20.6 0.0 0.00066 19.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 AJD70414.1 - 0.0015 18.2 0.1 0.0045 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 AJD70414.1 - 0.0053 17.2 0.0 0.016 15.6 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) OB_RNB PF08206.11 AJD70414.1 - 0.029 14.1 0.0 0.082 12.6 0.0 1.8 2 0 0 2 2 2 0 Ribonuclease B OB domain AAA_22 PF13401.6 AJD70414.1 - 0.068 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain TFIIA PF03153.13 AJD70414.1 - 0.34 10.8 28.6 0.53 10.2 28.6 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit AceK PF06315.11 AJD70415.1 - 1.3e-208 694.1 0.0 1.5e-208 693.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate dehydrogenase kinase/phosphatase (AceK) LysR_substrate PF03466.20 AJD70416.1 - 4.4e-29 101.4 5.7 6.8e-29 100.7 5.7 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70416.1 - 7.6e-17 61.0 1.8 1.7e-16 59.9 1.8 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AJD70416.1 - 0.013 15.3 0.2 0.032 14.0 0.2 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MAJIN PF15077.6 AJD70417.1 - 0.059 13.2 0.0 0.065 13.0 0.0 1.0 1 0 0 1 1 1 0 Membrane-anchored junction protein IDH PF03971.14 AJD70418.1 - 0 1307.6 0.0 0 1307.4 0.0 1.0 1 0 0 1 1 1 1 Monomeric isocitrate dehydrogenase DUF4115 PF13464.6 AJD70418.1 - 0.092 12.9 0.3 0.47 10.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4115) SWIM PF04434.17 AJD70419.1 - 0.012 15.2 0.4 0.026 14.2 0.4 1.6 1 0 0 1 1 1 0 SWIM zinc finger TPR_19 PF14559.6 AJD70419.1 - 0.017 15.6 0.6 0.017 15.6 0.6 4.1 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_11 PF13414.6 AJD70419.1 - 0.051 13.3 0.1 3.5 7.4 0.0 2.9 2 0 0 2 2 2 0 TPR repeat TPR_2 PF07719.17 AJD70419.1 - 0.082 13.1 2.7 13 6.2 0.0 4.9 4 0 0 4 4 4 0 Tetratricopeptide repeat PAXX PF15384.6 AJD70419.1 - 0.086 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 PAXX, PAralog of XRCC4 and XLF, also called C9orf142 DEAD PF00270.29 AJD70420.1 - 7.8e-09 35.5 0.0 1.3e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 AJD70420.1 - 2.8e-06 27.4 0.0 4.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HD PF01966.22 AJD70420.1 - 0.00014 22.0 0.5 0.00039 20.6 0.1 2.0 2 0 0 2 2 2 1 HD domain Helicase_C PF00271.31 AJD70420.1 - 0.0015 18.8 0.0 0.0028 18.0 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HD_6 PF18019.1 AJD70420.1 - 0.0037 17.4 1.3 0.015 15.4 1.0 2.2 2 1 0 2 2 2 1 HD domain PhoH PF02562.16 AJD70420.1 - 0.0081 15.6 0.0 0.24 10.8 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein SNF2_N PF00176.23 AJD70420.1 - 0.16 10.7 0.0 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain Cas_Cas5d PF09704.10 AJD70421.1 - 2.2e-46 158.5 0.1 2.5e-46 158.3 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_Csd1 PF09709.10 AJD70422.1 - 2e-39 135.8 0.0 2.4e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csd1) Cas_Csd1 PF09709.10 AJD70423.1 - 1.4e-93 314.5 0.0 1.6e-93 314.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csd1) Cas_Cas7 PF05107.12 AJD70424.1 - 9.2e-111 369.4 0.0 1e-110 369.2 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 CesT PF05932.13 AJD70424.1 - 0.022 14.9 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Tir chaperone protein (CesT) family Cas_Cas4 PF01930.17 AJD70425.1 - 1.1e-33 116.6 0.0 1.3e-33 116.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 AJD70425.1 - 3.6e-07 30.3 2.1 1.1e-05 25.5 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 AJD70425.1 - 0.15 11.4 0.1 0.53 9.6 0.0 1.8 1 1 0 2 2 2 0 CRISPR-associated exonuclease Csa1 Cas_Cas1 PF01867.16 AJD70426.1 - 1.1e-104 349.5 0.0 1.3e-104 349.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 AJD70427.1 - 7.5e-23 80.5 0.0 8.5e-23 80.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PG_binding_4 PF12229.8 AJD70428.1 - 0.06 13.6 0.1 0.083 13.2 0.1 1.2 1 0 0 1 1 1 0 Putative peptidoglycan binding domain CARDB PF07705.11 AJD70428.1 - 0.12 12.6 3.9 0.11 12.7 2.2 1.7 1 1 1 2 2 2 0 CARDB LysM PF01476.20 AJD70429.1 - 1.5e-13 50.6 0.0 2e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 LysM domain Tubulin-binding PF00418.19 AJD70429.1 - 0.016 15.2 0.8 0.046 13.7 0.2 1.9 1 1 1 2 2 2 0 Tau and MAP protein, tubulin-binding repeat QueF_N PF14819.6 AJD70430.1 - 1.1e-45 154.5 0.0 4.4e-45 152.5 0.0 1.8 2 0 0 2 2 2 1 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term QueF PF14489.6 AJD70430.1 - 7.7e-34 115.7 0.0 2.8e-27 94.7 0.0 2.2 2 0 0 2 2 2 2 QueF-like protein Peptidase_M20 PF01546.28 AJD70431.1 - 1.4e-32 113.1 0.1 2.2e-32 112.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AJD70431.1 - 1.2e-07 31.6 0.1 2.6e-07 30.5 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain HlyD_D23 PF16576.5 AJD70432.1 - 8.8e-21 74.1 2.3 2.6e-20 72.6 2.0 1.8 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AJD70432.1 - 1.9e-13 50.0 0.2 1.9e-13 50.0 0.2 2.7 2 1 0 2 2 2 1 Biotin-lipoyl like HlyD_3 PF13437.6 AJD70432.1 - 1e-09 39.1 4.2 1.4e-05 25.7 0.2 2.8 2 0 0 2 2 2 2 HlyD family secretion protein PTS_EIIA_1 PF00358.20 AJD70432.1 - 0.0048 16.6 0.0 0.014 15.2 0.0 1.8 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Peptidase_M23 PF01551.22 AJD70432.1 - 0.049 13.9 4.3 0.22 11.7 0.2 3.3 3 1 0 3 3 3 0 Peptidase family M23 BMC PF00936.19 AJD70432.1 - 0.06 13.3 0.2 0.17 11.9 0.2 1.8 1 0 0 1 1 1 0 BMC domain DUF4140 PF13600.6 AJD70432.1 - 0.15 12.5 1.9 0.3 11.5 0.9 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TPPK_C PF12555.8 AJD70432.1 - 9.2 6.4 7.2 0.66 10.1 0.6 2.4 2 1 1 3 3 3 0 Thiamine pyrophosphokinase C terminal ACR_tran PF00873.19 AJD70433.1 - 5.5e-298 991.0 33.0 2.9e-297 988.6 33.0 1.8 1 1 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD70433.1 - 5.5e-15 55.1 38.4 3.5e-10 39.4 12.9 3.3 3 1 1 4 4 4 2 MMPL family SecD_SecF PF02355.16 AJD70433.1 - 1.3e-05 24.7 25.8 0.0013 18.2 13.8 2.5 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 AJD70433.1 - 7.7e-05 21.0 12.9 0.00013 20.2 12.9 1.3 1 0 0 1 1 1 1 Patched family ACR_tran PF00873.19 AJD70434.1 - 8.6e-289 960.6 18.7 9.8e-289 960.4 18.7 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AJD70434.1 - 6.3e-08 31.9 35.9 9.5e-07 28.1 15.2 2.5 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 AJD70434.1 - 8.7e-05 20.8 10.3 8.7e-05 20.8 10.3 1.7 2 0 0 2 2 2 1 Patched family SecD_SecF PF02355.16 AJD70434.1 - 1.2 8.5 36.5 0.0092 15.4 18.3 2.6 2 0 0 2 2 2 0 Protein export membrane protein DUF1338 PF07063.13 AJD70435.1 - 1.1e-120 402.7 0.4 1.4e-120 402.4 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1338) Glyoxalase PF00903.25 AJD70435.1 - 0.05 13.8 0.0 0.09 13.0 0.0 1.6 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Cas6 PF09559.10 AJD70435.1 - 0.054 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Cas6 Crispr Iron_permease PF04120.12 AJD70436.1 - 0.065 13.0 0.2 0.46 10.3 0.1 1.9 2 0 0 2 2 2 0 Low affinity iron permease DUF3437 PF11919.8 AJD70436.1 - 0.1 12.5 0.0 0.64 10.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3437) HAD_2 PF13419.6 AJD70438.1 - 4.7e-07 30.1 0.0 9.8e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD70438.1 - 2.7e-06 27.8 0.2 5.5e-06 26.8 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2209 PF09974.9 AJD70438.1 - 0.0016 18.8 0.1 0.0026 18.1 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) Hydrolase_like PF13242.6 AJD70438.1 - 0.055 13.5 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like Acid_PPase PF12689.7 AJD70438.1 - 0.17 11.8 0.0 0.86 9.4 0.0 2.1 1 1 0 1 1 1 0 Acid Phosphatase EF-hand_5 PF13202.6 AJD70439.1 - 1.2e-09 37.2 0.1 1e-05 24.8 0.1 2.2 2 0 0 2 2 2 2 EF hand EF-hand_1 PF00036.32 AJD70439.1 - 3.8e-08 32.3 0.0 0.00013 21.3 0.0 2.1 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.6 AJD70439.1 - 6.6e-08 31.9 0.1 0.00091 19.0 0.0 2.2 2 0 0 2 2 2 2 EF-hand domain EF-hand_7 PF13499.6 AJD70439.1 - 1.1e-07 32.2 0.1 5.1e-06 26.8 0.1 2.1 1 1 0 1 1 1 1 EF-hand domain pair EF-hand_8 PF13833.6 AJD70439.1 - 7.7e-05 22.5 0.0 0.022 14.6 0.0 2.2 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_5 PF13202.6 AJD70440.1 - 9.8e-10 37.5 0.1 0.00017 21.0 0.0 2.2 2 0 0 2 2 2 2 EF hand EF-hand_1 PF00036.32 AJD70440.1 - 1.5e-08 33.6 0.0 0.00034 20.0 0.0 2.2 2 0 0 2 2 2 2 EF hand EF-hand_7 PF13499.6 AJD70440.1 - 2.5e-05 24.6 0.0 0.018 15.5 0.0 2.1 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_6 PF13405.6 AJD70440.1 - 9.9e-05 22.0 0.0 0.05 13.6 0.0 2.2 2 0 0 2 2 2 2 EF-hand domain EF-hand_8 PF13833.6 AJD70440.1 - 0.0095 15.8 0.1 1.9 8.4 0.0 2.2 2 0 0 2 2 2 2 EF-hand domain pair PepSY_2 PF13670.6 AJD70440.1 - 0.64 10.1 9.5 0.85 9.7 9.1 1.4 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain TrbC PF04956.13 AJD70440.1 - 0.79 10.0 6.4 1.5 9.1 6.4 1.7 1 1 0 1 1 1 0 TrbC/VIRB2 family Cys_rich_CPXG PF14255.6 AJD70442.1 - 2.7e-22 78.4 1.8 3.1e-22 78.2 1.8 1.1 1 0 0 1 1 1 1 Cysteine-rich CPXCG Peptidase_M15 PF01427.17 AJD70443.1 - 5.1e-41 140.6 0.0 6.4e-41 140.3 0.0 1.1 1 0 0 1 1 1 1 D-ala-D-ala dipeptidase VanY PF02557.17 AJD70443.1 - 0.023 14.5 0.2 0.23 11.3 0.2 2.4 1 1 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase Amidase_2 PF01510.25 AJD70444.1 - 9.8e-29 100.4 0.0 1.6e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase SH3_6 PF12913.7 AJD70445.1 - 4.7e-18 64.5 0.2 9.7e-18 63.5 0.2 1.5 1 0 0 1 1 1 1 SH3 domain (SH3b1 type) NLPC_P60 PF00877.19 AJD70445.1 - 7.1e-12 45.3 0.0 1.2e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 NlpC/P60 family SH3_7 PF12914.7 AJD70445.1 - 2.4e-06 27.6 0.0 4.5e-05 23.5 0.0 2.5 2 0 0 2 2 2 1 SH3 domain of SH3b2 type Peptidase_C92 PF05708.12 AJD70445.1 - 0.024 14.8 0.0 0.22 11.6 0.0 2.2 2 0 0 2 2 2 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family MR_MLE_C PF13378.6 AJD70446.1 - 2.7e-51 174.2 1.4 4.3e-51 173.6 1.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AJD70446.1 - 9.8e-19 67.7 0.1 2.6e-18 66.4 0.1 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 AJD70446.1 - 6.1e-05 22.3 0.1 6.1e-05 22.3 0.1 1.8 3 0 0 3 3 3 1 Methylaspartate ammonia-lyase C-terminus YkuD PF03734.14 AJD70447.1 - 0.00041 20.8 0.0 0.0009 19.7 0.0 1.5 1 1 0 1 1 1 1 L,D-transpeptidase catalytic domain AA_permease_2 PF13520.6 AJD70448.1 - 2.2e-48 165.1 31.5 2.7e-48 164.9 31.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD70448.1 - 2.7e-29 102.1 31.1 1.2e-28 100.0 30.5 2.0 1 1 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 AJD70448.1 - 0.006 16.6 0.3 0.006 16.6 0.3 3.7 5 0 0 5 5 5 1 C-terminus of AA_permease Spore_permease PF03845.13 AJD70448.1 - 0.12 11.1 10.7 0.019 13.8 5.3 2.2 2 0 0 2 2 2 0 Spore germination protein DUF1269 PF06897.12 AJD70449.1 - 2.4e-05 24.5 4.2 5.5e-05 23.4 4.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) YflT PF11181.8 AJD70449.1 - 0.0056 17.2 0.0 2.7 8.5 0.0 2.1 2 0 0 2 2 2 2 Heat induced stress protein YflT Gly-zipper_OmpA PF13436.6 AJD70449.1 - 1.3 8.9 24.6 1.6 8.6 9.0 2.6 2 0 0 2 2 2 0 Glycine-zipper domain YiaAB PF05360.14 AJD70451.1 - 2.2e-40 136.7 14.6 2.9e-20 72.3 3.8 2.1 2 0 0 2 2 2 2 yiaA/B two helix domain DUF3040 PF11239.8 AJD70451.1 - 0.51 10.7 7.0 0.48 10.7 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF4131 PF13567.6 AJD70451.1 - 2.5 7.7 7.5 7.6 6.2 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) GSDH PF07995.11 AJD70452.1 - 1.6e-125 418.8 0.0 1.9e-125 418.6 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.11 AJD70452.1 - 0.00036 20.4 0.1 6.3 7.4 0.0 3.7 3 0 0 3 3 3 2 Two component regulator propeller SGL PF08450.12 AJD70452.1 - 0.028 14.0 0.0 8.6 5.8 0.0 2.7 4 0 0 4 4 4 0 SMP-30/Gluconolactonase/LRE-like region Glyco_hydro_3 PF00933.21 AJD70453.1 - 1.2e-69 235.2 0.0 1.6e-69 234.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 AJD70453.1 - 9.1e-52 176.0 0.0 1.3e-51 175.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 AJD70453.1 - 2.3e-20 72.5 0.1 4.7e-20 71.5 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain FolB PF02152.18 AJD70454.1 - 1.6e-30 105.9 0.0 1.8e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Peptidase_M22 PF00814.25 AJD70455.1 - 2.4e-100 335.7 0.0 2.8e-100 335.5 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 AJD70455.1 - 0.092 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus Ribosomal_S21 PF01165.20 AJD70456.1 - 3.5e-22 77.9 6.2 3.5e-22 77.9 6.2 1.5 2 0 0 2 2 2 1 Ribosomal protein S21 YqeY PF09424.10 AJD70457.1 - 2.4e-54 183.3 8.1 2.7e-54 183.1 8.1 1.0 1 0 0 1 1 1 1 Yqey-like protein GatB_Yqey PF02637.18 AJD70457.1 - 0.047 13.6 3.5 0.29 11.0 1.6 2.2 1 1 1 2 2 2 0 GatB domain GldM_C PF12080.8 AJD70457.1 - 0.07 13.4 0.4 0.097 12.9 0.4 1.2 1 0 0 1 1 1 0 GldM C-terminal domain DGCR6 PF07324.11 AJD70457.1 - 0.14 11.8 2.5 0.18 11.4 2.5 1.1 1 0 0 1 1 1 0 DiGeorge syndrome critical region 6 (DGCR6) protein Virul_fac_BrkB PF03631.15 AJD70458.1 - 9.3e-50 169.6 31.8 1.1e-49 169.5 31.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB zf-CHC2 PF01807.20 AJD70459.1 - 3.6e-38 129.3 0.0 1e-37 127.9 0.0 1.8 2 0 0 2 2 2 1 CHC2 zinc finger Toprim_N PF08275.11 AJD70459.1 - 5.6e-38 129.9 0.0 9e-38 129.2 0.0 1.3 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain DnaG_DnaB_bind PF08278.11 AJD70459.1 - 3.9e-26 92.1 8.4 9.1e-26 90.9 8.4 1.7 1 0 0 1 1 1 1 DNA primase DnaG DnaB-binding Toprim_2 PF13155.6 AJD70459.1 - 4.8e-14 52.6 0.0 1.1e-13 51.4 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim_4 PF13662.6 AJD70459.1 - 6.4e-14 52.2 0.0 1.4e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Toprim domain DnaB_bind PF10410.9 AJD70459.1 - 2.6e-12 46.7 0.1 1.2e-11 44.6 0.0 2.3 2 0 0 2 2 2 1 DnaB-helicase binding domain of primase Toprim_3 PF13362.6 AJD70459.1 - 1.9e-09 37.7 0.0 3.5e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.22 AJD70459.1 - 3.6e-08 33.6 0.0 8.2e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Toprim domain SBF_like PF13593.6 AJD70460.1 - 2.3e-96 322.8 21.0 2.6e-96 322.6 21.0 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.16 AJD70460.1 - 3.3e-13 49.8 7.7 3.3e-13 49.8 7.7 2.1 2 1 1 3 3 3 1 Sodium Bile acid symporter family Thioredoxin_7 PF13899.6 AJD70461.1 - 1e-14 54.4 0.0 2.9e-14 53.0 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 AJD70461.1 - 1.2e-10 41.8 0.0 2.2e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 AJD70461.1 - 5.9e-08 32.6 0.0 1.1e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.15 AJD70461.1 - 3e-05 24.0 0.0 6.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_8 PF13905.6 AJD70461.1 - 0.00048 20.4 0.0 0.092 13.1 0.0 2.5 1 1 1 2 2 2 2 Thioredoxin-like Glutaredoxin PF00462.24 AJD70461.1 - 0.003 17.8 0.0 0.0064 16.7 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.10 AJD70461.1 - 0.019 14.7 0.0 0.057 13.1 0.0 1.8 1 1 0 1 1 1 0 Redoxin AhpC-TSA PF00578.21 AJD70461.1 - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family TPR_12 PF13424.6 AJD70461.1 - 6.6 7.1 8.2 3.1 8.1 0.3 4.1 5 0 0 5 5 5 0 Tetratricopeptide repeat UbiA PF01040.18 AJD70462.1 - 6.6e-55 186.1 40.6 8.4e-55 185.8 40.5 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family Pox_P21 PF05313.12 AJD70462.1 - 0.33 10.5 5.9 2.2 7.8 0.0 2.5 2 0 0 2 2 2 0 Poxvirus P21 membrane protein COX15-CtaA PF02628.15 AJD70463.1 - 2.4e-65 220.8 34.9 4.1e-45 154.3 27.4 2.0 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein SURF1 PF02104.15 AJD70465.1 - 5.1e-22 79.0 0.1 6.3e-22 78.7 0.1 1.1 1 0 0 1 1 1 1 SURF1 family DUF3311 PF11755.8 AJD70465.1 - 0.039 13.9 3.7 0.078 12.9 1.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) DUF2909 PF11137.8 AJD70466.1 - 4.4e-22 77.8 5.3 4.8e-22 77.6 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2909) Sdh_cyt PF01127.22 AJD70466.1 - 0.023 14.7 1.7 0.026 14.5 1.7 1.2 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF1461 PF07314.11 AJD70466.1 - 0.21 11.5 0.9 0.25 11.2 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) PsbN PF02468.15 AJD70466.1 - 1 9.2 5.2 0.26 11.1 0.6 1.9 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) COX3 PF00510.18 AJD70467.1 - 1.1e-60 205.7 22.2 1.9e-44 152.4 10.0 2.0 2 0 0 2 2 2 2 Cytochrome c oxidase subunit III CtaG_Cox11 PF04442.14 AJD70468.1 - 1.6e-46 158.1 0.0 1.9e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Cytochrome c oxidase assembly protein CtaG/Cox11 DUF5345 PF17280.2 AJD70469.1 - 0.018 15.0 0.0 0.019 14.9 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5345) Tom5 PF10642.9 AJD70469.1 - 0.085 12.9 0.4 0.13 12.3 0.4 1.3 1 0 0 1 1 1 0 Mitochondrial import receptor subunit or translocase COX1 PF00115.20 AJD70470.1 - 2.7e-150 501.0 74.2 3.4e-150 500.7 74.2 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 AJD70471.1 - 8.9e-40 135.3 0.0 1.4e-39 134.7 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 AJD70471.1 - 6.3e-13 48.7 0.3 1.1e-12 47.9 0.3 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF898 PF05987.13 AJD70471.1 - 0.0023 17.0 3.6 0.0035 16.4 3.6 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF898) DUF4293 PF14126.6 AJD70471.1 - 0.18 12.1 1.5 0.29 11.4 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) FeoB_associated PF12669.7 AJD70471.1 - 2.8 8.4 4.4 0.58 10.6 0.4 1.9 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF2244 PF10003.9 AJD70472.1 - 9.4e-31 106.3 1.1 1.3e-30 105.9 1.1 1.2 1 0 0 1 1 1 1 Integral membrane protein (DUF2244) TPR_14 PF13428.6 AJD70472.1 - 0.17 12.8 1.4 0.28 12.1 0.0 2.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Aldedh PF00171.22 AJD70473.1 - 6.4e-117 390.9 0.5 1.1e-116 390.2 0.5 1.3 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pro_dh PF01619.18 AJD70473.1 - 2.1e-91 306.5 0.0 3.5e-91 305.8 0.0 1.3 1 0 0 1 1 1 1 Proline dehydrogenase Pro_dh-DNA_bdg PF14850.6 AJD70473.1 - 9.7e-45 151.7 0.0 2.8e-44 150.2 0.0 1.9 1 0 0 1 1 1 1 DNA-binding domain of Proline dehydrogenase PRODH PF18327.1 AJD70473.1 - 1.8e-14 53.6 7.8 1.8e-14 53.6 7.8 3.4 3 0 0 3 3 3 1 Proline utilization A proline dehydrogenase N-terminal domain Se-cys_synth_N PF12390.8 AJD70473.1 - 0.062 13.5 1.1 52 4.2 0.1 4.2 3 0 0 3 3 3 0 Selenocysteine synthase N terminal tRNA-synt_1b PF00579.25 AJD70475.1 - 1.4e-72 244.5 0.0 1.7e-72 244.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.25 AJD70475.1 - 0.00025 20.7 0.0 0.00053 19.7 0.0 1.5 1 0 0 1 1 1 1 S4 domain TyrRSs_C PF16714.5 AJD70475.1 - 0.12 12.2 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain HTH_50 PF18024.1 AJD70475.1 - 0.14 11.8 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_M23 PF01551.22 AJD70476.1 - 9.4e-36 121.9 2.0 1.7e-33 114.7 2.4 2.5 2 0 0 2 2 2 2 Peptidase family M23 OapA PF04225.12 AJD70476.1 - 3.3e-07 30.3 0.0 1.6e-06 28.1 0.0 2.1 3 0 0 3 3 3 1 Opacity-associated protein A LysM-like domain DUF4786 PF16027.5 AJD70476.1 - 0.11 13.0 0.0 11 6.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4786) AnmK PF03702.14 AJD70477.1 - 1.7e-151 504.5 0.7 1.9e-151 504.3 0.7 1.0 1 0 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase FGGY_C PF02782.16 AJD70477.1 - 0.018 14.7 1.1 0.41 10.3 0.1 2.2 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain YCII PF03795.14 AJD70478.1 - 0.055 13.9 0.0 0.077 13.4 0.0 1.1 1 0 0 1 1 1 0 YCII-related domain MFS_1 PF07690.16 AJD70479.1 - 2.6e-21 75.9 46.7 2.6e-21 75.9 46.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Acatn PF13000.7 AJD70479.1 - 9.4e-09 34.3 11.6 4.7e-06 25.4 5.5 3.2 2 1 0 2 2 2 2 Acetyl-coenzyme A transporter 1 Exo_endo_phos PF03372.23 AJD70480.1 - 2.7e-20 72.9 1.4 3.2e-20 72.6 1.4 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 AJD70480.1 - 0.0035 17.2 0.0 0.046 13.6 0.0 2.2 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Pribosyltran PF00156.27 AJD70481.1 - 2.4e-15 56.4 0.1 3.3e-15 55.9 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AJD70481.1 - 0.11 11.9 0.1 0.14 11.6 0.1 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 AJD70481.1 - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase RbpA PF13397.6 AJD70482.1 - 0.036 14.7 0.4 0.059 14.0 0.4 1.4 1 0 0 1 1 1 0 RNA polymerase-binding protein AAA_31 PF13614.6 AJD70483.1 - 8.3e-64 214.7 0.0 1.2e-63 214.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AJD70483.1 - 9.1e-28 96.9 0.0 1.6e-27 96.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 AJD70483.1 - 1.5e-16 60.5 0.2 1.8e-15 57.0 0.2 2.1 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 AJD70483.1 - 1.2e-11 44.6 0.0 1.8e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 AJD70483.1 - 1e-10 41.5 0.8 7.1e-09 35.5 0.3 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 AJD70483.1 - 7.8e-08 32.1 0.1 5.8e-05 22.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 AJD70483.1 - 2.3e-05 23.7 0.4 0.00016 21.0 0.1 2.1 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 AJD70483.1 - 0.005 16.2 1.1 0.0069 15.7 0.2 1.6 2 0 0 2 2 2 1 VirC1 protein SRP54 PF00448.22 AJD70483.1 - 0.019 14.6 0.5 0.062 12.9 0.2 1.9 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 AJD70483.1 - 0.077 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 AJD70483.1 - 0.15 11.7 0.2 0.3 10.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain ParBc PF02195.18 AJD70484.1 - 2.5e-27 95.0 0.7 2.5e-27 95.0 0.7 2.0 2 0 0 2 2 2 1 ParB-like nuclease domain HTH_ParB PF17762.1 AJD70484.1 - 6.5e-12 45.1 2.0 6.5e-12 45.1 2.0 2.0 2 0 0 2 2 2 1 HTH domain found in ParB protein HTH_37 PF13744.6 AJD70484.1 - 0.002 18.1 4.4 0.027 14.4 0.0 3.8 2 1 1 4 4 4 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70484.1 - 0.006 16.3 0.4 0.44 10.4 0.0 3.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 AJD70484.1 - 0.017 15.0 0.8 0.052 13.5 0.7 2.0 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Cdd1 PF11731.8 AJD70485.1 - 3.6e-31 107.2 0.0 4.2e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.13 AJD70485.1 - 0.0056 16.7 0.0 0.015 15.4 0.0 1.6 2 0 0 2 2 2 1 TfoX C-terminal domain Epimerase PF01370.21 AJD70486.1 - 3.8e-60 203.3 0.0 4.6e-60 203.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AJD70486.1 - 1.1e-53 182.9 0.0 1.7e-53 182.2 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 AJD70486.1 - 6.7e-19 68.1 0.0 8.2e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 AJD70486.1 - 3.7e-16 59.0 0.0 4.9e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 AJD70486.1 - 2.6e-12 46.5 0.0 1.3e-11 44.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 AJD70486.1 - 3.8e-07 29.6 0.0 2.7e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.25 AJD70486.1 - 9e-07 28.5 0.0 8.2e-06 25.4 0.0 2.0 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 AJD70486.1 - 3.5e-06 27.0 0.0 6.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 AJD70486.1 - 3.3e-05 23.9 0.0 6.1e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 AJD70486.1 - 0.002 17.7 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_N PF03721.14 AJD70486.1 - 0.0057 16.3 0.0 0.011 15.3 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glycos_transf_2 PF00535.26 AJD70487.1 - 1.8e-23 83.2 0.0 2.7e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70487.1 - 2.1e-11 44.2 0.7 7.6e-11 42.3 0.7 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AJD70487.1 - 0.00056 20.4 0.1 0.0016 18.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 AJD70487.1 - 0.037 13.5 0.0 0.048 13.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 LAB_N PF07578.11 AJD70488.1 - 3.8e-21 74.9 3.5 5.4e-21 74.5 3.5 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain PGM_PMM_I PF02878.16 AJD70490.1 - 1.4e-35 122.1 0.0 2.4e-35 121.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 AJD70490.1 - 3.8e-29 101.3 0.2 1.2e-28 99.7 0.4 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 AJD70490.1 - 2e-24 86.0 0.0 4.6e-24 84.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 AJD70490.1 - 5.2e-14 52.2 0.0 1.7e-13 50.6 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Phage_holin_3_6 PF07332.11 AJD70490.1 - 0.0048 16.9 1.9 0.13 12.3 0.7 2.8 2 0 0 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III dUTPase PF00692.19 AJD70491.1 - 3e-33 114.2 0.0 3.4e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 dUTPase Cupin_6 PF12852.7 AJD70491.1 - 0.048 13.4 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Cupin DFP PF04127.15 AJD70492.1 - 2.3e-68 229.7 0.6 8.8e-68 227.8 0.1 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 AJD70492.1 - 2e-43 147.9 0.0 3.3e-43 147.2 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein YjeF_N PF03853.15 AJD70492.1 - 0.028 14.3 0.9 10 6.0 0.0 3.0 4 0 0 4 4 4 0 YjeF-related protein N-terminus RadC PF04002.15 AJD70493.1 - 4.4e-42 142.9 0.0 6e-42 142.5 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 AJD70493.1 - 0.0013 18.5 0.1 0.0037 17.0 0.0 1.8 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain TPP_enzyme_M PF00205.22 AJD70493.1 - 0.092 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain YjeF_N PF03853.15 AJD70493.1 - 0.15 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus DALR_1 PF05746.15 AJD70494.1 - 4.1e-36 123.8 1.4 8.4e-36 122.7 1.4 1.5 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 AJD70494.1 - 4e-25 88.2 0.0 9.5e-25 87.0 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1d PF00750.19 AJD70494.1 - 4.8e-25 88.3 0.0 1.5e-24 86.6 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1e PF01406.19 AJD70494.1 - 1.1e-06 28.3 0.0 0.025 13.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 AJD70494.1 - 1.1e-06 27.2 0.0 0.03 12.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 AJD70494.1 - 8.5e-06 24.9 0.0 0.00036 19.6 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 AJD70494.1 - 0.00023 20.1 0.0 0.038 12.7 0.0 3.0 3 0 0 3 3 3 1 tRNA synthetases class I (M) RNase_H2-Ydr279 PF09468.10 AJD70494.1 - 0.021 15.0 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) wHTH domain tRNA-synt_1c PF00749.21 AJD70494.1 - 0.15 10.9 0.2 2.7 6.8 0.1 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain SPOR PF05036.13 AJD70495.1 - 2.5e-15 56.6 2.6 1.2e-14 54.4 0.2 2.6 2 0 0 2 2 2 1 Sporulation related domain Arm-DNA-bind_3 PF13356.6 AJD70495.1 - 0.012 15.9 2.4 0.013 15.8 0.1 2.1 2 0 0 2 2 2 0 Arm DNA-binding domain Sgf11_N PF18519.1 AJD70496.1 - 0.099 12.2 0.3 0.17 11.5 0.3 1.2 1 0 0 1 1 1 0 SAGA-associated factor 11 N-terminal domain adh_short PF00106.25 AJD70497.1 - 1.1e-52 178.4 0.8 1.4e-52 178.0 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AJD70497.1 - 5e-34 117.9 3.1 6.1e-34 117.6 3.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AJD70497.1 - 5.5e-11 42.7 1.5 7e-11 42.4 1.5 1.1 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 AJD70497.1 - 0.00019 21.1 0.5 0.00029 20.4 0.4 1.4 2 0 0 2 2 2 1 NmrA-like family Epimerase PF01370.21 AJD70497.1 - 0.00019 21.0 0.2 0.00024 20.6 0.2 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 AJD70497.1 - 0.00097 18.4 0.0 0.0013 17.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 AJD70497.1 - 0.0037 17.2 4.6 0.013 15.4 4.6 1.9 1 1 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 AJD70497.1 - 0.018 15.6 0.1 0.12 13.0 0.1 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 AJD70497.1 - 0.019 15.0 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase RmlD_sub_bind PF04321.17 AJD70497.1 - 0.021 13.9 0.5 0.041 13.0 0.2 1.7 2 0 0 2 2 2 0 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 AJD70497.1 - 0.022 15.0 0.2 0.033 14.4 0.2 1.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Acyl_transf_3 PF01757.22 AJD70498.1 - 1.4e-25 90.1 32.5 1.8e-25 89.7 32.5 1.1 1 0 0 1 1 1 1 Acyltransferase family OpgC_C PF10129.9 AJD70498.1 - 0.00018 20.5 9.7 0.00018 20.5 9.7 3.0 1 1 1 3 3 3 1 OpgC protein DUF1624 PF07786.12 AJD70498.1 - 0.002 17.8 16.8 0.0041 16.7 13.3 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF1624) ATP_synth_reg PF14960.6 AJD70498.1 - 2.8 7.5 7.1 0.27 10.8 0.3 2.5 3 0 0 3 3 3 0 ATP synthase regulation Glyco_transf_28 PF03033.20 AJD70499.1 - 4.5e-10 39.7 0.1 2.4e-09 37.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_tran_28_C PF04101.16 AJD70499.1 - 0.002 18.1 0.0 0.003 17.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain AMP-binding PF00501.28 AJD70500.1 - 8.5e-86 288.2 0.0 1.4e-85 287.4 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.20 AJD70500.1 - 1.8e-58 198.3 0.0 2.3e-58 198.0 0.0 1.1 1 0 0 1 1 1 1 Condensation domain Thioesterase PF00975.20 AJD70500.1 - 2.8e-29 102.9 0.9 8.3e-29 101.3 0.3 2.0 2 0 0 2 2 2 1 Thioesterase domain PP-binding PF00550.25 AJD70500.1 - 6.4e-16 58.5 0.0 2.2e-15 56.7 0.0 2.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site AMP-binding_C PF13193.6 AJD70500.1 - 1.5e-12 48.3 0.0 7.2e-12 46.1 0.0 2.3 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Abhydrolase_6 PF12697.7 AJD70500.1 - 1.1e-05 26.1 12.7 1.1e-05 26.1 12.7 4.3 2 1 1 4 4 4 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AJD70500.1 - 0.03 14.0 0.0 0.07 12.8 0.0 1.6 1 0 0 1 1 1 0 alpha/beta hydrolase fold PGAP1 PF07819.13 AJD70500.1 - 0.19 11.4 0.0 0.4 10.4 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein Orn_Arg_deC_N PF02784.16 AJD70501.1 - 4.5e-45 153.9 0.0 6.9e-45 153.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Arg_decarb_HB PF17810.1 AJD70501.1 - 8.4e-20 70.8 1.7 1.2e-19 70.3 0.5 1.9 2 0 0 2 2 2 1 Arginine decarboxylase helical bundle domain Arg_decarbox_C PF17944.1 AJD70501.1 - 1.2e-12 48.2 0.7 2.8e-12 47.0 0.7 1.7 1 0 0 1 1 1 1 Arginine decarboxylase C-terminal helical extension Spermine_synth PF01564.17 AJD70502.1 - 1.7e-53 180.8 0.0 2.2e-53 180.5 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 AJD70502.1 - 4.7e-10 39.2 0.0 7.7e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_24 PF13578.6 AJD70502.1 - 0.12 13.4 0.0 0.24 12.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TraO PF10626.9 AJD70502.1 - 0.16 11.7 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Conjugative transposon protein TraO bPH_3 PF14470.6 AJD70503.1 - 3.8e-18 65.7 0.0 5.1e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain SHOCT PF09851.9 AJD70503.1 - 3e-09 36.3 0.3 7.8e-09 35.0 0.3 1.8 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 AJD70503.1 - 0.00055 19.9 0.4 0.0016 18.4 0.0 1.9 2 0 0 2 2 2 1 Gas vesicle protein G hnRNP_Q_AcD PF18360.1 AJD70503.1 - 0.028 14.4 0.1 0.28 11.2 0.1 2.2 2 0 0 2 2 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Ribosomal_S19 PF00203.21 AJD70503.1 - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19 OMP_b-brl PF13505.6 AJD70504.1 - 3.6e-06 27.2 5.3 3.6e-06 27.2 5.3 2.1 3 0 0 3 3 3 1 Outer membrane protein beta-barrel domain APH PF01636.23 AJD70505.1 - 3.9e-05 23.7 3.8 5.9e-05 23.1 1.2 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 AJD70505.1 - 0.00013 21.4 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 AJD70505.1 - 0.00029 20.5 0.0 0.00039 20.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Choline_kinase PF01633.20 AJD70505.1 - 0.00046 19.8 0.0 0.0031 17.1 0.0 1.9 1 1 0 1 1 1 1 Choline/ethanolamine kinase Kdo PF06293.14 AJD70505.1 - 0.0059 16.0 0.1 0.014 14.7 0.0 1.7 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF4135 PF13575.6 AJD70505.1 - 0.0064 15.9 0.0 0.0098 15.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) WaaY PF06176.11 AJD70505.1 - 0.026 14.1 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) FTA2 PF13095.6 AJD70505.1 - 0.088 12.4 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 NAGidase PF07555.13 AJD70506.1 - 3.5e-103 344.9 0.0 4.7e-103 344.5 0.0 1.2 1 0 0 1 1 1 1 beta-N-acetylglucosaminidase Glyco_hydro_20b PF02838.15 AJD70506.1 - 8.7e-21 75.0 0.5 1.9e-20 73.9 0.5 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 Glyco_hydro_67N PF03648.14 AJD70506.1 - 0.02 15.2 0.0 0.052 13.8 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 67 N-terminus PepSY_2 PF13670.6 AJD70506.1 - 0.87 9.6 4.7 9.2 6.4 0.0 3.5 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain P-II PF00543.22 AJD70507.1 - 2.2e-41 140.6 1.8 2.4e-41 140.4 1.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF3240 PF11582.8 AJD70507.1 - 0.0043 17.2 0.0 0.0056 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3240) BMFP PF04380.13 AJD70508.1 - 2.3e-26 92.1 2.2 2.6e-26 91.9 2.2 1.0 1 0 0 1 1 1 1 Membrane fusogenic activity Mg_chelatase PF01078.21 AJD70509.1 - 7.1e-79 264.0 0.1 1e-78 263.5 0.1 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ChlI PF13541.6 AJD70509.1 - 4e-46 155.8 0.0 6e-46 155.2 0.0 1.3 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 AJD70509.1 - 1.4e-09 37.3 0.0 3.5e-08 32.8 0.0 2.2 1 1 0 1 1 1 1 MCM P-loop domain AAA_5 PF07728.14 AJD70509.1 - 1.9e-09 37.6 0.0 7.3e-09 35.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 AJD70509.1 - 2.3e-05 24.2 0.0 0.054 13.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 AJD70509.1 - 0.00082 19.1 0.0 0.43 10.3 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AJD70509.1 - 0.0018 18.6 1.3 0.0033 17.8 0.2 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 AJD70509.1 - 0.0024 18.3 0.0 0.0073 16.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AJD70509.1 - 0.0041 17.4 0.0 0.0084 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Lon_C PF05362.13 AJD70509.1 - 0.011 15.3 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Lon protease (S16) C-terminal proteolytic domain AAA_19 PF13245.6 AJD70509.1 - 0.025 14.9 0.0 0.098 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 AJD70509.1 - 0.035 14.0 0.0 8.1 6.3 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 AJD70509.1 - 0.04 13.4 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_33 PF13671.6 AJD70509.1 - 0.095 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 AJD70509.1 - 0.11 13.1 0.0 0.22 12.0 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Phage_integrase PF00589.22 AJD70510.1 - 2e-06 27.7 0.0 5.7e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family HTH_21 PF13276.6 AJD70514.1 - 0.00031 20.8 1.0 0.00048 20.2 1.0 1.3 1 0 0 1 1 1 1 HTH-like domain rve PF00665.26 AJD70515.1 - 4.6e-24 84.9 0.0 6.4e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD70515.1 - 2.6e-19 68.7 0.1 5.3e-19 67.8 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain Mrr_cat PF04471.12 AJD70518.1 - 2.2e-16 59.9 0.0 3.7e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 AJD70518.1 - 0.0056 16.6 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease UvrD-helicase PF00580.21 AJD70519.1 - 1.4e-21 77.3 0.0 5.8e-14 52.3 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 AJD70519.1 - 5.5e-17 62.5 0.0 6.4e-16 59.0 0.0 2.6 2 2 0 2 2 2 1 AAA domain UvrD_C PF13361.6 AJD70519.1 - 7.2e-09 35.5 0.0 1e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AJD70519.1 - 1.4e-07 31.4 0.0 0.0077 16.0 0.0 3.2 3 0 0 3 3 3 2 AAA domain UvrD_C_2 PF13538.6 AJD70519.1 - 1e-05 25.2 0.1 2.6e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 AJD70519.1 - 0.00061 19.6 0.0 0.31 10.7 0.0 3.3 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 AJD70519.1 - 0.0019 17.8 0.0 0.012 15.3 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 AJD70519.1 - 0.017 15.4 1.0 9 6.6 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 AJD70520.1 - 5.1e-18 65.9 0.0 7.6e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AJD70520.1 - 1.5e-10 41.4 0.1 3.6e-10 40.1 0.2 1.6 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 AJD70520.1 - 0.026 13.8 0.0 0.044 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) rve PF00665.26 AJD70521.1 - 6.7e-26 90.8 0.0 1.3e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AJD70521.1 - 1.6e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AJD70521.1 - 1.5e-05 25.0 0.5 2.9e-05 24.1 0.5 1.5 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD70521.1 - 0.027 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 DDE domain HTH_Tnp_1 PF01527.20 AJD70522.1 - 2.9e-21 75.5 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD70522.1 - 7.9e-07 29.1 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70522.1 - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 AJD70522.1 - 0.0012 19.0 0.6 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AJD70522.1 - 0.0019 18.2 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AJD70522.1 - 0.027 14.6 0.1 0.2 11.8 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AJD70522.1 - 0.05 13.2 0.7 1.1 8.9 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TSC22 PF01166.18 AJD70522.1 - 0.055 13.8 0.3 0.094 13.0 0.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family WD40_alt PF14077.6 AJD70522.1 - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF1657 PF07870.11 AJD70522.1 - 0.4 10.6 4.6 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) AAA_15 PF13175.6 AJD70523.1 - 1.4e-13 51.3 0.0 1.6e-13 51.2 0.0 1.0 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 AJD70523.1 - 2.2e-12 47.9 0.0 2.5e-12 47.8 0.0 1.0 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AJD70523.1 - 5.6e-08 32.5 0.0 6.2e-08 32.3 0.0 1.0 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 AJD70523.1 - 1.4e-07 31.1 0.0 1.6e-07 30.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_29 PF13555.6 AJD70523.1 - 1.7e-07 30.9 0.0 2e-07 30.7 0.0 1.0 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 AJD70523.1 - 3.1e-07 30.2 0.0 3.3e-07 30.1 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 AJD70523.1 - 2.2e-06 27.7 0.0 2.5e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_P4 PF11602.8 AJD70523.1 - 0.03 13.5 0.0 0.03 13.5 0.0 1.0 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 Flagellin_N PF00669.20 AJD70523.1 - 0.053 13.6 0.0 0.059 13.5 0.0 1.0 1 0 0 1 1 1 0 Bacterial flagellin N-terminal helical region AAA_13 PF13166.6 AJD70523.1 - 0.06 12.0 0.0 0.065 11.9 0.0 1.0 1 0 0 1 1 1 0 AAA domain RusA PF05866.11 AJD70524.1 - 9.4e-09 35.9 0.1 1.5e-08 35.2 0.1 1.3 1 0 0 1 1 1 1 Endodeoxyribonuclease RusA Mago-bind PF09282.10 AJD70524.1 - 1.6 8.7 5.3 0.19 11.6 0.6 1.9 2 0 0 2 2 2 0 Mago binding HNH_4 PF13395.6 AJD70525.1 - 0.009 15.9 0.0 0.018 14.9 0.0 1.5 1 1 0 1 1 1 1 HNH endonuclease AAA_21 PF13304.6 AJD70526.1 - 5.2e-19 69.2 0.4 2.8e-14 53.6 0.8 2.7 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 AJD70526.1 - 1.2e-16 61.4 0.0 1.5e-12 48.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 AJD70526.1 - 4e-06 26.4 0.0 0.023 14.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 AJD70526.1 - 0.0011 19.5 0.0 0.021 15.4 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.6 AJD70526.1 - 0.019 15.4 0.0 0.096 13.1 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 AJD70526.1 - 0.02 15.2 0.0 0.75 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 AJD70526.1 - 0.15 11.9 0.1 0.47 10.2 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain WYL PF13280.6 AJD70528.1 - 1.3e-10 41.6 0.0 2.2e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 WYL domain ThiF PF00899.21 AJD70530.1 - 8.6e-12 44.9 0.0 1.5e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 ThiF family Prok-JAB PF14464.6 AJD70530.1 - 3.1e-09 36.6 0.0 6.3e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Mg_chelatase_C PF13335.6 AJD70532.1 - 1.2e-30 106.0 7.3 1.7e-30 105.5 7.3 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal Mg_chelatase PF01078.21 AJD70532.1 - 1.7e-12 47.2 0.0 2.9e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_pol_A_CTD PF03118.15 AJD70532.1 - 0.053 13.3 0.1 0.097 12.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain IPPT PF01715.17 AJD70532.1 - 0.097 12.5 0.7 0.13 12.0 0.7 1.2 1 0 0 1 1 1 0 IPP transferase Lipocalin_2 PF08212.12 AJD70533.1 - 5.6e-55 185.3 0.0 6.4e-55 185.1 0.0 1.0 1 0 0 1 1 1 1 Lipocalin-like domain Lipocalin PF00061.23 AJD70533.1 - 0.15 12.3 0.0 0.61 10.3 0.0 1.9 1 1 0 1 1 1 0 Lipocalin / cytosolic fatty-acid binding protein family EAL PF00563.20 AJD70535.1 - 1.4e-62 211.3 0.0 2.1e-62 210.8 0.0 1.2 1 0 0 1 1 1 1 EAL domain CSS-motif PF12792.7 AJD70535.1 - 1.6e-32 112.7 0.3 3e-32 111.8 0.3 1.4 1 0 0 1 1 1 1 CSS motif domain associated with EAL FA_desaturase PF00487.24 AJD70536.1 - 1.5e-32 113.5 8.4 1.5e-32 113.5 8.4 2.0 1 1 1 2 2 2 2 Fatty acid desaturase DUF3040 PF11239.8 AJD70536.1 - 5 7.5 7.2 6.4 7.1 1.9 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) NAD_binding_1 PF00175.21 AJD70537.1 - 1.5e-13 51.4 0.0 2.4e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 AJD70537.1 - 4.7e-10 39.7 0.0 1.8e-09 37.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain Fer2 PF00111.27 AJD70537.1 - 2.8e-06 27.2 0.3 6.9e-06 25.9 0.3 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_6 PF08030.12 AJD70537.1 - 0.12 12.5 0.1 1.1 9.4 0.0 2.0 1 1 1 2 2 2 0 Ferric reductase NAD binding domain TetR_N PF00440.23 AJD70538.1 - 1.9e-08 34.0 0.0 4.2e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_15 PF17918.1 AJD70538.1 - 0.0026 18.5 5.5 0.0058 17.4 3.3 2.5 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain UBA_5 PF16577.5 AJD70538.1 - 0.0042 17.2 0.1 0.0088 16.2 0.1 1.5 1 0 0 1 1 1 1 UBA domain PqqD PF05402.12 AJD70538.1 - 0.0068 16.7 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Sec66 PF09802.9 AJD70538.1 - 0.15 11.6 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Preprotein translocase subunit Sec66 Band_7 PF01145.25 AJD70541.1 - 3.5e-31 108.6 3.3 2.3e-24 86.4 0.2 3.1 3 0 0 3 3 3 3 SPFH domain / Band 7 family Band_7_1 PF13421.6 AJD70541.1 - 0.036 13.8 0.0 24 4.5 0.0 3.5 3 1 0 3 3 3 0 SPFH domain-Band 7 family RtcB PF01139.17 AJD70542.1 - 3.4e-125 418.4 1.7 8.2e-125 417.2 1.7 1.5 1 1 0 1 1 1 1 tRNA-splicing ligase RtcB Gam PF06064.11 AJD70542.1 - 0.021 15.1 0.1 0.068 13.4 0.1 1.8 2 0 0 2 2 2 0 Host-nuclease inhibitor protein Gam Hexapep PF00132.24 AJD70542.1 - 0.055 13.2 0.2 0.13 12.0 0.2 1.7 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) DUF1269 PF06897.12 AJD70543.1 - 0.035 14.4 9.2 0.063 13.6 9.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) Gly-zipper_YMGG PF13441.6 AJD70543.1 - 0.053 13.3 34.6 0.082 12.7 34.6 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper Bacteriocin_IIc PF10439.9 AJD70543.1 - 0.76 9.9 24.3 1.3 9.2 24.3 1.4 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_Omp PF13488.6 AJD70543.1 - 1.2 9.2 31.0 3.7 7.6 31.0 1.7 1 1 0 1 1 1 0 Glycine zipper ATPase_gene1 PF09527.10 AJD70543.1 - 7.1 6.9 9.5 12 6.1 9.5 1.3 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Peptidase_S9 PF00326.21 AJD70544.1 - 5.9e-13 48.8 0.2 2.3e-12 46.9 0.2 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 AJD70544.1 - 9.5e-09 36.2 9.3 5.2e-08 33.8 1.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD70544.1 - 6.8e-07 28.8 0.8 8.2e-06 25.3 0.1 2.0 1 1 1 2 2 2 1 Serine aminopeptidase, S33 DLH PF01738.18 AJD70544.1 - 7e-07 29.0 0.1 2.9e-05 23.7 0.1 2.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 AJD70544.1 - 7.5e-07 29.0 0.6 0.00017 21.3 0.3 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold UPF0227 PF05728.12 AJD70544.1 - 4.6e-05 23.4 0.1 7e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) AXE1 PF05448.12 AJD70544.1 - 0.0021 16.8 0.1 0.39 9.4 0.0 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) DUF2920 PF11144.8 AJD70544.1 - 0.0032 16.7 0.0 0.0048 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2920) DUF1100 PF06500.11 AJD70544.1 - 0.0045 15.9 0.0 0.0073 15.2 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_3 PF07859.13 AJD70544.1 - 0.0066 16.3 2.0 0.014 15.2 0.8 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold PGAP1 PF07819.13 AJD70544.1 - 0.011 15.5 0.0 0.5 10.0 0.0 2.2 2 0 0 2 2 2 0 PGAP1-like protein BAAT_C PF08840.11 AJD70544.1 - 0.012 15.6 0.0 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_4 PF08386.10 AJD70544.1 - 0.026 14.7 0.1 0.064 13.4 0.0 1.7 2 0 0 2 2 1 0 TAP-like protein Peptidase_S15 PF02129.18 AJD70544.1 - 0.057 13.0 0.4 0.27 10.8 0.1 2.2 1 1 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) DUF2235 PF09994.9 AJD70544.1 - 0.14 11.5 0.3 3.6 6.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) DUF3182 PF11379.8 AJD70545.1 - 1.5e-125 418.8 0.1 1.7e-125 418.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3182) DUF1206 PF06724.11 AJD70546.1 - 0.00085 19.4 0.1 0.00088 19.3 0.1 1.1 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1206) DUF5619 PF18505.1 AJD70546.1 - 0.12 12.3 0.0 0.14 12.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5619) NRBF2_MIT PF17169.4 AJD70547.1 - 0.0082 16.3 0.1 0.0096 16.1 0.1 1.3 1 0 0 1 1 1 1 MIT domain of nuclear receptor-binding factor 2 GrpB PF04229.14 AJD70547.1 - 0.13 12.5 0.1 0.2 11.8 0.1 1.4 1 1 0 1 1 1 0 GrpB protein DUF4142 PF13628.6 AJD70549.1 - 2.6e-14 53.7 4.8 3.2e-14 53.4 4.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) Strep_his_triad PF04270.13 AJD70549.1 - 0.08 12.9 0.1 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 Streptococcal histidine triad protein DUF1731 PF08338.11 AJD70550.1 - 8.9e-18 63.9 1.3 1.6e-17 63.0 0.8 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1731) Epimerase PF01370.21 AJD70550.1 - 6.7e-17 61.8 0.0 6.1e-12 45.5 0.0 2.2 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AJD70550.1 - 1.9e-10 40.6 0.0 2.4e-05 23.9 0.0 3.0 2 1 1 3 3 3 3 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 AJD70550.1 - 7.8e-06 25.9 0.2 3.4e-05 23.8 0.2 2.0 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 AJD70550.1 - 1.7e-05 24.5 0.1 2.7e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 AJD70550.1 - 0.00029 20.0 0.1 0.0012 18.0 0.0 2.0 3 0 0 3 3 3 1 RmlD substrate binding domain F420_oxidored PF03807.17 AJD70550.1 - 0.00053 20.5 0.2 0.0013 19.3 0.0 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 AJD70550.1 - 0.002 17.6 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase 3Beta_HSD PF01073.19 AJD70550.1 - 0.0027 16.8 0.0 0.0035 16.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 AJD70550.1 - 0.0057 15.8 0.0 0.0095 15.1 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Glyco_trans_4_4 PF13579.6 AJD70550.1 - 0.011 16.2 4.5 0.011 16.2 4.5 2.4 1 1 0 2 2 2 0 Glycosyl transferase 4-like domain KR PF08659.10 AJD70550.1 - 0.024 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 KR domain Glyco_transf_4 PF13439.6 AJD70550.1 - 0.034 14.1 0.0 0.078 13.0 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Sacchrp_dh_NADP PF03435.18 AJD70550.1 - 0.058 13.7 0.0 0.17 12.1 0.0 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Abhydrolase_9 PF10081.9 AJD70550.1 - 0.1 11.6 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta-hydrolase family NAD_binding_2 PF03446.15 AJD70550.1 - 0.11 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 AJD70550.1 - 0.14 11.8 0.1 0.25 11.0 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Polysacc_synt_2 PF02719.15 AJD70550.1 - 0.18 10.9 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Response_reg PF00072.24 AJD70551.1 - 4.7e-21 75.1 0.0 7.1e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD70551.1 - 9.3e-20 70.5 0.0 2.4e-19 69.2 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal HisKA PF00512.25 AJD70552.1 - 2.4e-14 53.1 2.5 6.3e-14 51.8 2.5 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 AJD70552.1 - 2.8e-14 53.6 0.0 4.9e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AJD70552.1 - 2.6e-06 27.7 3.9 4.6e-06 26.9 0.1 3.0 3 0 0 3 3 3 1 HAMP domain HATPase_c_2 PF13581.6 AJD70552.1 - 0.0017 18.3 0.1 0.0082 16.1 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain DUF3313 PF11769.8 AJD70554.1 - 1.7e-44 151.9 0.0 1.9e-44 151.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3313) Apolipoprotein PF01442.18 AJD70555.1 - 0.0021 17.9 41.6 0.055 13.3 5.6 2.5 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain DUF1451 PF07295.11 AJD70555.1 - 2.9 7.9 18.7 0.49 10.4 2.8 2.9 1 1 1 2 2 2 0 Zinc-ribbon containing domain Trypsin_2 PF13365.6 AJD70556.1 - 4e-32 112.2 1.9 9e-32 111.0 1.9 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 AJD70556.1 - 8.4e-19 68.3 0.4 2.2e-18 66.9 0.4 1.6 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 AJD70556.1 - 1.1e-16 60.9 3.1 1.5e-12 47.6 0.1 3.1 3 1 1 4 4 4 2 PDZ domain PDZ PF00595.24 AJD70556.1 - 2.2e-15 56.8 0.8 1.5e-08 34.9 0.2 3.4 3 0 0 3 3 3 2 PDZ domain PDZ_6 PF17820.1 AJD70556.1 - 8.6e-13 47.9 8.2 3e-09 36.6 1.1 3.9 3 0 0 3 3 3 2 PDZ domain Peptidase_S46 PF10459.9 AJD70556.1 - 0.0075 15.0 1.1 0.41 9.2 1.0 2.1 2 0 0 2 2 2 2 Peptidase S46 EutK_C PF16365.5 AJD70556.1 - 0.028 14.4 0.0 0.087 12.9 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilization protein EutK C-terminus DUF31 PF01732.16 AJD70556.1 - 0.75 9.3 2.7 1 8.8 0.9 1.8 2 0 0 2 2 2 0 Putative peptidase (DUF31) DUF883 PF05957.13 AJD70557.1 - 7.4e-06 26.5 4.0 0.0015 19.1 0.5 2.3 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) Phage_holin_3_6 PF07332.11 AJD70558.1 - 2.8e-05 24.1 10.6 3.8e-05 23.7 10.6 1.3 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III FA_desaturase PF00487.24 AJD70558.1 - 0.021 14.7 1.6 0.028 14.3 1.6 1.2 1 0 0 1 1 1 0 Fatty acid desaturase 2TM PF13239.6 AJD70558.1 - 0.12 12.7 1.4 0.18 12.1 1.4 1.3 1 0 0 1 1 1 0 2TM domain PmbA_TldD PF01523.16 AJD70558.1 - 0.14 12.0 0.1 0.9 9.3 0.0 1.7 1 1 1 2 2 2 0 Putative modulator of DNA gyrase DUF883 PF05957.13 AJD70559.1 - 0.062 13.9 4.0 2.1 9.0 0.4 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) AI-2E_transport PF01594.16 AJD70560.1 - 1.8e-43 149.0 26.6 2.3e-43 148.6 26.6 1.1 1 0 0 1 1 1 1 AI-2E family transporter Mobilization_B PF17511.2 AJD70560.1 - 1.5 9.2 7.3 1.2 9.5 0.7 2.5 2 0 0 2 2 2 0 Mobilization protein B HAD_2 PF13419.6 AJD70561.1 - 1.9e-12 47.6 0.0 3.3e-12 46.8 0.0 1.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AJD70561.1 - 4.1e-12 46.8 0.0 1.2e-11 45.3 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AJD70561.1 - 9.6e-09 35.2 0.0 1.8e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.7 AJD70561.1 - 0.011 15.6 0.2 1.3 8.9 0.3 2.2 2 0 0 2 2 2 0 Acid Phosphatase Peptidase_M10_C PF08548.11 AJD70561.1 - 0.26 11.2 0.0 0.33 10.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase M10 serralysin C terminal Peptidase_M17 PF00883.21 AJD70562.1 - 2.6e-103 345.6 0.0 3.7e-103 345.1 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain DUF4880 PF16220.5 AJD70563.1 - 0.00027 20.8 3.9 0.00027 20.8 3.9 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) zf-HC2 PF13490.6 AJD70563.1 - 0.0076 16.5 0.1 0.021 15.0 0.1 1.8 1 0 0 1 1 1 1 Putative zinc-finger GrpB PF04229.14 AJD70563.1 - 0.019 15.2 0.1 0.068 13.4 0.1 1.8 2 0 0 2 2 2 0 GrpB protein BRK PF07533.16 AJD70563.1 - 0.11 12.1 0.2 5.7 6.6 0.1 2.7 3 0 0 3 3 3 0 BRK domain Sigma70_r4_2 PF08281.12 AJD70564.1 - 2.1e-16 59.3 0.2 2.1e-16 59.3 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AJD70564.1 - 1.1e-11 44.0 0.2 2.2e-11 43.1 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD70564.1 - 5.1e-10 39.0 3.8 5.1e-10 39.0 3.8 1.5 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 AJD70564.1 - 4.3e-06 26.7 0.9 0.00011 22.1 0.1 2.0 2 0 0 2 2 2 1 ECF sigma factor HTH_23 PF13384.6 AJD70564.1 - 2.6e-05 23.9 3.7 0.00027 20.6 0.0 2.9 3 1 0 3 3 3 1 Homeodomain-like domain GerE PF00196.19 AJD70564.1 - 0.0017 17.8 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 AJD70564.1 - 0.0046 16.5 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AJD70564.1 - 0.017 14.9 1.0 0.047 13.5 0.0 2.2 2 1 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DprA_WH PF17782.1 AJD70564.1 - 0.032 14.4 5.7 1.3 9.2 0.3 2.7 2 1 0 2 2 2 0 DprA winged helix domain DUF2089 PF09862.9 AJD70564.1 - 0.15 12.1 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) TnsD PF15978.5 AJD70564.1 - 0.16 11.0 0.0 0.21 10.6 0.0 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D Catalase PF00199.19 AJD70565.1 - 7.2e-24 84.6 0.0 1e-23 84.1 0.0 1.1 1 0 0 1 1 1 1 Catalase Ni_hydr_CYTB PF01292.20 AJD70566.1 - 2.4e-29 102.2 19.0 2.7e-29 102.1 19.0 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B561 PF03188.16 AJD70566.1 - 0.0019 18.3 7.0 0.018 15.1 0.3 2.9 3 0 0 3 3 3 2 Eukaryotic cytochrome b561 Optomotor-blind PF11078.8 AJD70566.1 - 0.016 15.8 0.8 0.034 14.7 0.8 1.6 1 0 0 1 1 1 0 Optomotor-blind protein N-terminal region Ferric_reduct PF01794.19 AJD70566.1 - 2.4 8.3 14.8 2.1 8.5 3.2 2.6 1 1 0 2 2 2 0 Ferric reductase like transmembrane component ThuA PF06283.11 AJD70567.1 - 3.3e-56 190.8 2.0 3.8e-56 190.6 2.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation DUF4159 PF13709.6 AJD70567.1 - 0.068 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Response_reg PF00072.24 AJD70568.1 - 6.4e-25 87.5 0.0 9.5e-25 86.9 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD70568.1 - 1.6e-16 59.6 0.0 2.2e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 AJD70568.1 - 9e-08 31.5 0.1 2.1e-07 30.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 AJD70568.1 - 3e-07 30.0 0.0 7e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 AJD70568.1 - 7.9e-05 23.0 0.0 0.00016 22.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70568.1 - 0.00025 20.8 0.1 0.00064 19.4 0.1 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 AJD70568.1 - 0.0003 20.1 0.0 0.00061 19.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 AJD70568.1 - 0.00045 20.2 0.0 0.0015 18.5 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 AJD70568.1 - 0.00069 19.7 0.1 0.0019 18.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 AJD70568.1 - 0.0014 18.5 0.1 0.0082 16.1 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.6 AJD70568.1 - 0.0039 16.9 1.0 0.014 15.1 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 AJD70568.1 - 0.016 15.2 0.4 0.049 13.7 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF742 PF05331.11 AJD70568.1 - 0.018 14.8 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_24 PF13412.6 AJD70568.1 - 0.025 14.2 0.2 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 AJD70568.1 - 0.026 14.3 0.1 0.099 12.5 0.1 2.0 2 0 0 2 2 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 AJD70568.1 - 0.035 14.0 0.0 0.13 12.2 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 AJD70568.1 - 0.042 13.7 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2089 PF09862.9 AJD70568.1 - 0.047 13.7 0.0 0.074 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_7 PF02796.15 AJD70568.1 - 0.048 13.7 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DprA_WH PF17782.1 AJD70568.1 - 0.066 13.3 4.2 5.2 7.3 0.1 3.1 3 0 0 3 3 3 0 DprA winged helix domain HTH_10 PF04967.12 AJD70568.1 - 0.074 12.9 0.1 1.6 8.6 0.1 2.5 1 1 0 1 1 1 0 HTH DNA binding domain PAX PF00292.18 AJD70568.1 - 0.17 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 'Paired box' domain HisKA_3 PF07730.13 AJD70569.1 - 2e-18 66.7 6.0 2e-18 66.7 6.0 2.7 3 0 0 3 3 3 1 Histidine kinase HATPase_c_2 PF13581.6 AJD70569.1 - 2.7e-06 27.3 0.7 6.2e-06 26.2 0.7 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 AJD70569.1 - 0.00085 19.8 0.0 0.0027 18.2 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 AJD70569.1 - 0.14 12.5 0.3 0.14 12.5 0.3 2.0 2 0 0 2 2 2 0 PAS fold CARM1 PF11531.8 AJD70569.1 - 0.2 11.8 0.1 0.38 11.0 0.1 1.4 1 0 0 1 1 1 0 Coactivator-associated arginine methyltransferase 1 N terminal HlyD_D23 PF16576.5 AJD70570.1 - 4.4e-20 71.8 8.1 2.1e-19 69.6 8.1 2.1 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD70570.1 - 6.3e-18 65.4 6.4 6.5e-14 52.5 0.7 2.7 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD70570.1 - 1.4e-07 31.2 2.1 1.4e-07 31.2 2.1 3.4 3 1 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AJD70570.1 - 0.00014 21.6 3.2 0.00042 20.1 0.1 3.1 4 0 0 4 4 4 1 Biotin-requiring enzyme HlyD PF00529.20 AJD70570.1 - 0.0014 18.5 7.1 0.0015 18.4 0.8 2.9 1 1 0 2 2 2 1 HlyD membrane-fusion protein of T1SS T2SSN PF01203.19 AJD70570.1 - 0.044 14.0 12.4 0.12 12.6 12.4 1.8 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein N Peptidase_M23 PF01551.22 AJD70570.1 - 0.1 12.8 3.3 0.23 11.7 0.2 2.7 3 0 0 3 3 3 0 Peptidase family M23 ABC_tran PF00005.27 AJD70571.1 - 4.3e-34 118.0 0.0 6.5e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70571.1 - 4.4e-08 33.3 0.4 0.0029 17.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70571.1 - 6.8e-06 25.7 0.2 0.0053 16.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD70571.1 - 0.0001 22.7 0.3 0.00028 21.3 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AJD70571.1 - 0.00038 20.7 0.5 0.0021 18.3 0.5 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AJD70571.1 - 0.00058 19.8 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 AJD70571.1 - 0.0006 19.5 0.0 0.099 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AJD70571.1 - 0.00096 18.9 0.1 0.0021 17.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AJD70571.1 - 0.0013 18.4 0.1 0.038 13.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 AJD70571.1 - 0.0024 18.4 1.1 0.29 11.7 1.1 2.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 AJD70571.1 - 0.004 17.1 0.5 0.26 11.2 0.1 2.2 2 0 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.17 AJD70571.1 - 0.0079 16.0 0.0 0.82 9.4 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.6 AJD70571.1 - 0.013 16.0 0.0 0.028 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AJD70571.1 - 0.015 15.6 0.1 0.27 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 AJD70571.1 - 0.041 13.6 0.1 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 AJD70571.1 - 0.078 13.1 1.3 0.5 10.5 1.3 2.1 1 1 0 1 1 1 0 AAA domain Metallophos_3 PF14582.6 AJD70571.1 - 0.081 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily cobW PF02492.19 AJD70571.1 - 0.086 12.4 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 AJD70571.1 - 0.089 12.8 0.0 0.46 10.5 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 AJD70571.1 - 0.093 11.8 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein YcgR PF07317.12 AJD70571.1 - 0.096 12.6 0.1 0.21 11.5 0.0 1.6 2 0 0 2 2 1 0 Flagellar regulator YcgR AAA_19 PF13245.6 AJD70571.1 - 0.1 12.9 0.1 2.9 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AJD70571.1 - 0.14 11.3 0.2 0.25 10.5 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 AJD70571.1 - 0.17 12.0 0.3 0.73 9.9 0.1 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 AJD70571.1 - 0.24 11.7 0.9 5.7 7.3 0.2 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MacB_PCD PF12704.7 AJD70572.1 - 2.7e-08 34.4 0.1 2.7e-08 34.4 0.1 3.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 AJD70572.1 - 3.2e-07 30.7 5.4 3.2e-07 30.7 5.4 2.6 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 AJD70573.1 - 3.5e-14 53.6 5.3 3.5e-14 53.6 5.3 2.6 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.21 AJD70573.1 - 4.1e-07 30.4 5.1 4.1e-07 30.4 5.1 3.8 4 0 0 4 4 4 2 FtsX-like permease family Abhydrolase_6 PF12697.7 AJD70574.1 - 9.2e-16 59.1 14.2 9.2e-16 59.1 14.2 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD70574.1 - 3.3e-13 49.5 1.1 5.3e-12 45.5 1.1 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AJD70574.1 - 5.5e-12 45.9 0.8 2.2e-11 43.9 0.6 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 AJD70574.1 - 3.9e-07 29.9 0.1 5.2e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 AJD70574.1 - 1e-05 25.2 0.8 0.00031 20.3 0.8 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 AJD70574.1 - 0.0066 16.3 0.0 6.5 6.5 0.0 2.9 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase EamA PF00892.20 AJD70575.1 - 3.7e-08 33.6 11.5 5e-08 33.2 11.5 1.1 1 0 0 1 1 1 1 EamA-like transporter family EamA PF00892.20 AJD70576.1 - 5.1e-12 46.1 12.6 6.1e-12 45.9 12.6 1.0 1 0 0 1 1 1 1 EamA-like transporter family OST3_OST6 PF04756.13 AJD70576.1 - 0.2 11.0 0.5 0.29 10.4 0.5 1.3 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DUF2070 PF09843.9 AJD70576.1 - 0.52 8.5 3.6 0.59 8.4 3.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) VIT1 PF01988.19 AJD70576.1 - 8.2 6.2 7.5 1.4 8.7 4.1 1.4 2 0 0 2 2 2 0 VIT family EamA PF00892.20 AJD70577.1 - 3.2e-30 105.1 30.6 1e-18 67.8 8.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF1427 PF07235.11 AJD70577.1 - 0.088 12.8 1.6 0.27 11.2 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) Rap1a PF18602.1 AJD70578.1 - 2.7e-12 46.8 0.0 3.8e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Rap1a immunity proteins Peptidase_M28 PF04389.17 AJD70579.1 - 1.3e-49 168.6 0.0 1.9e-49 168.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 AJD70579.1 - 1.2e-10 41.3 0.1 3e-10 40.0 0.1 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 AJD70579.1 - 8.4e-06 25.6 0.0 1.5e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 AJD70579.1 - 0.0098 14.9 0.0 0.046 12.7 0.0 2.0 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Lactamase_B PF00753.27 AJD70580.1 - 1.1e-23 84.3 1.9 1.5e-23 83.9 1.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AJD70580.1 - 1.7e-06 27.7 1.6 4.3e-06 26.4 1.6 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain tRNA-synt_1b PF00579.25 AJD70581.1 - 2.5e-55 187.9 0.0 3.3e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF1508 PF07411.12 AJD70581.1 - 0.00011 22.0 0.0 0.00021 21.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) tRNA-synt_1f PF01921.18 AJD70581.1 - 0.0069 15.3 0.0 0.2 10.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) CsbD PF05532.12 AJD70582.1 - 2.1e-19 69.2 2.9 2.4e-19 69.0 2.9 1.1 1 0 0 1 1 1 1 CsbD-like Entericidin PF08085.11 AJD70583.1 - 3.9e-08 33.0 5.7 5.3e-08 32.6 5.7 1.2 1 0 0 1 1 1 1 Entericidin EcnA/B family Entericidin PF08085.11 AJD70584.1 - 2.2e-07 30.7 2.8 3e-07 30.2 2.8 1.2 1 0 0 1 1 1 1 Entericidin EcnA/B family Arginase PF00491.21 AJD70585.1 - 8.2e-76 255.2 0.0 9.5e-76 254.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family Robl_LC7 PF03259.17 AJD70586.1 - 6.6e-06 25.8 0.1 9.9e-06 25.3 0.1 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain Glyco_hydro_4 PF02056.16 AJD70586.1 - 0.19 11.2 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Robl_LC7 PF03259.17 AJD70587.1 - 0.0037 17.0 0.4 0.005 16.6 0.4 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain ATP_bind_1 PF03029.17 AJD70589.1 - 4.5e-07 29.9 1.3 0.00081 19.2 0.0 2.2 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Roc PF08477.13 AJD70589.1 - 0.0039 17.4 0.0 0.0053 17.0 0.0 1.2 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 AJD70589.1 - 0.086 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 AJD70589.1 - 0.1 12.8 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 AJD70589.1 - 0.17 11.3 0.0 0.51 9.8 0.0 1.7 1 1 0 1 1 1 0 ADP-ribosylation factor family ABC_tran PF00005.27 AJD70589.1 - 0.18 12.3 0.1 0.46 11.0 0.1 1.5 1 1 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.17 AJD70590.1 - 1e-39 136.2 0.0 1.2e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 AJD70590.1 - 3.1e-08 34.0 0.0 3.9e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AJD70590.1 - 1.3e-06 29.0 0.0 2.9e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD70590.1 - 5.6e-06 26.6 0.0 1.1e-05 25.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD70590.1 - 6.9e-05 23.3 1.7 0.00014 22.3 1.7 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AJD70590.1 - 0.00025 21.3 0.0 0.0011 19.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain dNK PF01712.19 AJD70590.1 - 0.00035 20.5 0.0 0.028 14.3 0.0 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_30 PF13604.6 AJD70590.1 - 0.0023 17.7 0.7 0.0038 17.0 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 AJD70590.1 - 0.0052 17.2 0.0 0.012 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AJD70590.1 - 0.0055 17.2 0.0 0.0056 17.2 0.0 1.3 1 1 0 1 1 1 1 ABC transporter MobB PF03205.14 AJD70590.1 - 0.006 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 AJD70590.1 - 0.0076 16.3 0.3 0.0076 16.3 0.3 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 AJD70590.1 - 0.009 15.7 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NACHT PF05729.12 AJD70590.1 - 0.014 15.3 0.1 0.027 14.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain PPK2 PF03976.14 AJD70590.1 - 0.016 14.8 0.1 0.026 14.0 0.1 1.4 1 1 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) MeaB PF03308.16 AJD70590.1 - 0.019 14.0 0.1 0.029 13.4 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 AJD70590.1 - 0.033 13.6 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 LytR_C PF13399.6 AJD70590.1 - 0.035 15.1 0.3 0.12 13.3 0.1 1.9 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator APS_kinase PF01583.20 AJD70590.1 - 0.042 13.7 0.1 0.07 13.0 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase TsaE PF02367.17 AJD70590.1 - 0.068 13.2 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ParA PF10609.9 AJD70590.1 - 0.099 12.1 0.1 1.5 8.2 0.0 2.0 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA_5 PF07728.14 AJD70590.1 - 0.1 12.6 0.1 0.44 10.6 0.1 2.0 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) SKI PF01202.22 AJD70590.1 - 0.16 12.1 0.1 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 Shikimate kinase AAA_31 PF13614.6 AJD70590.1 - 0.17 11.7 0.0 0.68 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain SPOR PF05036.13 AJD70591.1 - 8.6e-09 35.7 0.6 8.6e-09 35.7 0.6 1.6 2 0 0 2 2 2 1 Sporulation related domain Pan_kinase PF03309.14 AJD70592.1 - 9.1e-36 123.6 0.5 1.1e-35 123.3 0.5 1.1 1 0 0 1 1 1 1 Type III pantothenate kinase HTH_11 PF08279.12 AJD70593.1 - 2.8e-10 40.0 0.0 5e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 AJD70593.1 - 3.6e-09 36.6 0.0 5.6e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 AJD70593.1 - 1.3e-07 31.4 0.1 3.5e-07 30.0 0.1 1.8 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_AsnC-type PF13404.6 AJD70593.1 - 0.00023 20.9 0.3 0.00074 19.3 0.3 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AJD70593.1 - 0.0013 18.3 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Peptidase_M90 PF06167.12 AJD70595.1 - 1.7e-75 253.8 0.0 1.9e-75 253.6 0.0 1.0 1 0 0 1 1 1 1 Glucose-regulated metallo-peptidase M90 Peptidase_M91 PF14891.6 AJD70595.1 - 0.17 12.2 0.0 0.49 10.7 0.0 1.6 1 1 1 2 2 2 0 Effector protein DUF1501 PF07394.12 AJD70596.1 - 1.2e-45 156.2 0.7 4.6e-45 154.3 0.7 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1501) TAT_signal PF10518.9 AJD70596.1 - 0.01 15.6 0.2 0.033 14.0 0.2 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1800 PF08811.11 AJD70597.1 - 7.1e-127 424.0 1.7 8.1e-127 423.8 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1800) HATPase_c PF02518.26 AJD70598.1 - 6.4e-14 52.4 0.0 2.9e-13 50.3 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD70598.1 - 0.0017 18.3 1.5 0.0037 17.3 0.5 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 AJD70598.1 - 0.0044 16.9 0.2 0.058 13.3 0.2 2.2 1 1 0 1 1 1 1 GHKL domain HAMP PF00672.25 AJD70598.1 - 0.0069 16.7 0.4 0.037 14.4 0.1 2.4 2 0 0 2 2 2 1 HAMP domain THOC7 PF05615.13 AJD70598.1 - 0.016 15.5 1.2 0.045 14.0 1.2 1.7 1 1 0 1 1 1 0 Tho complex subunit 7 Cep57_CLD_2 PF14197.6 AJD70598.1 - 0.48 10.6 3.4 0.39 10.8 0.1 2.4 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 Response_reg PF00072.24 AJD70599.1 - 2.1e-27 95.5 0.0 3.7e-27 94.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AJD70599.1 - 1.7e-24 85.7 0.0 4.2e-24 84.4 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Lipase_C PF18067.1 AJD70599.1 - 0.11 13.0 0.0 0.34 11.5 0.0 1.8 2 0 0 2 2 2 0 Lipase C-terminal domain Dus PF01207.17 AJD70601.1 - 3.6e-78 262.8 0.0 4.3e-78 262.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 AJD70601.1 - 0.083 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase PAC3 PF10178.9 AJD70601.1 - 0.13 12.4 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Proteasome assembly chaperone 3 Zemlya PF17646.1 AJD70601.1 - 0.17 12.2 0.0 0.38 11.1 0.0 1.5 1 0 0 1 1 1 0 Closterovirus 1a polyprotein central region MerC PF03203.14 AJD70602.1 - 0.034 14.6 5.7 0.041 14.4 5.7 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein CPBP PF02517.16 AJD70602.1 - 0.57 10.6 3.6 0.68 10.4 3.6 1.2 1 0 0 1 1 1 0 CPBP intramembrane metalloprotease Ank_5 PF13857.6 AJD70603.1 - 4.9e-23 80.9 2.3 2.4e-07 30.9 0.0 3.7 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank_2 PF12796.7 AJD70603.1 - 1.5e-18 67.2 0.3 7.4e-11 42.5 0.0 2.2 1 1 1 2 2 2 2 Ankyrin repeats (3 copies) Ank_4 PF13637.6 AJD70603.1 - 2.8e-15 56.5 0.3 8.5e-06 26.2 0.0 3.6 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank PF00023.30 AJD70603.1 - 7.6e-11 41.9 0.2 0.0024 18.2 0.0 4.1 4 0 0 4 4 4 3 Ankyrin repeat Ank_3 PF13606.6 AJD70603.1 - 6.6e-09 35.3 0.0 0.032 14.8 0.0 3.9 4 0 0 4 4 4 2 Ankyrin repeat Catalase PF00199.19 AJD70604.1 - 2.1e-123 412.2 0.1 2.6e-123 412.0 0.1 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 AJD70604.1 - 1.9e-13 50.4 0.0 4.4e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive Helicase_C_2 PF13307.6 AJD70605.1 - 1.7e-31 109.7 0.0 2.4e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD PF00270.29 AJD70605.1 - 0.005 16.6 1.6 0.051 13.4 0.2 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AJD70605.1 - 0.0089 16.4 0.0 0.019 15.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD_2 PF06733.15 AJD70605.1 - 0.042 13.5 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 DEAD_2 DUF1206 PF06724.11 AJD70606.1 - 0.018 15.1 5.9 0.79 9.9 1.6 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF4345 PF14248.6 AJD70606.1 - 0.12 12.3 7.6 0.38 10.7 7.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4345) Tetraspanin PF00335.20 AJD70606.1 - 0.17 11.6 4.2 0.36 10.5 4.3 1.5 1 1 0 1 1 1 0 Tetraspanin family DUF202 PF02656.15 AJD70606.1 - 0.23 11.9 7.0 4.6 7.7 7.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PEP-CTERM PF07589.11 AJD70606.1 - 1.5 9.0 7.6 0.15 12.2 2.5 2.1 2 0 0 2 2 2 0 PEP-CTERM motif YiaAB PF05360.14 AJD70606.1 - 1.7 8.9 7.3 7.5 6.9 1.2 2.1 2 0 0 2 2 2 0 yiaA/B two helix domain DUF3488 PF11992.8 AJD70607.1 - 0.73 8.7 13.5 0.65 8.9 12.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3488) HemY_N PF07219.13 AJD70607.1 - 7.3 6.9 10.2 3.2 8.0 0.5 2.5 2 1 0 2 2 2 0 HemY protein N-terminus Shikimate_dh_N PF08501.11 AJD70608.1 - 5.2e-25 87.5 0.0 9.4e-25 86.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 AJD70608.1 - 2e-14 53.1 0.1 3.6e-14 52.2 0.1 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 AJD70608.1 - 2.2e-12 47.2 0.0 3.7e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 AJD70608.1 - 0.00029 21.1 0.0 0.00052 20.3 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 AJD70608.1 - 0.00051 20.6 0.0 0.001 19.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 AJD70608.1 - 0.0035 17.7 0.0 0.0067 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Staph_opine_DH PF10100.9 AJD70608.1 - 0.16 10.6 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Staphylopine dehydrogenase PD40 PF07676.12 AJD70609.1 - 1.5e-33 114.0 1.6 5e-10 39.1 0.1 4.9 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat PepSY_TM PF03929.16 AJD70610.1 - 4.3e-61 207.1 9.5 4.3e-61 207.1 9.5 1.7 2 0 0 2 2 2 1 PepSY-associated TM region Flavodoxin_1 PF00258.25 AJD70610.1 - 3.1e-24 85.8 0.0 5.6e-24 85.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin NAD_binding_1 PF00175.21 AJD70610.1 - 1.3e-07 32.2 0.0 2.2e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain PepSY_TM_like_2 PF16357.5 AJD70610.1 - 0.015 15.3 0.3 0.015 15.3 0.3 3.0 3 1 0 3 3 3 0 Putative PepSY_TM-like DUF982 PF06169.12 AJD70610.1 - 0.023 14.7 0.5 0.18 11.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF982) DUF2627 PF11118.8 AJD70610.1 - 0.27 11.8 3.1 0.34 11.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) DUF3592 PF12158.8 AJD70610.1 - 0.28 11.2 0.0 0.28 11.2 0.0 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3592) Cytochrom_B561 PF03188.16 AJD70610.1 - 0.86 9.7 4.8 1.7 8.7 0.4 2.9 3 0 0 3 3 3 0 Eukaryotic cytochrome b561 Endonuclease_NS PF01223.23 AJD70611.1 - 5.9e-43 147.3 0.0 7e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease Endonuclea_NS_2 PF13930.6 AJD70611.1 - 1.9e-05 24.8 0.1 8.2e-05 22.7 0.1 1.9 2 1 0 2 2 2 1 DNA/RNA non-specific endonuclease ABA_WDS PF02496.16 AJD70611.1 - 0.38 11.3 0.2 0.38 11.3 0.2 1.7 2 0 0 2 2 2 0 ABA/WDS induced protein LysR_substrate PF03466.20 AJD70612.1 - 3.7e-28 98.3 10.7 3.7e-28 98.3 10.7 2.0 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70612.1 - 1.6e-19 69.6 0.4 3.6e-19 68.5 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 AJD70612.1 - 0.015 15.4 0.1 0.015 15.4 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 AJD70612.1 - 0.037 13.9 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_30 PF13556.6 AJD70612.1 - 0.075 12.8 1.4 0.19 11.6 0.0 2.5 2 1 1 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 AJD70612.1 - 0.19 11.8 1.6 0.23 11.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 AJD70612.1 - 0.31 11.0 4.5 0.63 10.0 0.1 3.1 3 0 0 3 3 3 0 MarR family Epimerase PF01370.21 AJD70613.1 - 2.1e-12 47.0 0.0 3.5e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD70613.1 - 3.5e-10 40.1 0.1 6.2e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 AJD70613.1 - 5.3e-07 29.0 0.3 0.026 13.6 0.1 2.4 2 1 0 2 2 2 2 RmlD substrate binding domain adh_short PF00106.25 AJD70613.1 - 0.00033 20.2 0.4 0.00049 19.6 0.4 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 AJD70613.1 - 0.00098 18.7 0.0 0.0017 17.9 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family ALAD PF00490.21 AJD70614.1 - 6.3e-140 465.8 0.0 7.1e-140 465.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase FecCD PF01032.18 AJD70615.1 - 0.0037 16.3 7.8 0.0042 16.1 7.8 1.1 1 0 0 1 1 1 1 FecCD transport family DUF4133 PF13571.6 AJD70615.1 - 0.2 12.0 3.5 0.25 11.7 3.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4133) Sigma_M_inh PF17453.2 AJD70615.1 - 0.21 12.0 6.0 0.25 11.8 6.0 1.1 1 0 0 1 1 1 0 Sigma-M inhibitor DUF2244 PF10003.9 AJD70615.1 - 0.22 11.2 7.2 0.26 10.9 7.2 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF3624 PF12292.8 AJD70615.1 - 1.2 9.6 4.4 0.48 10.9 2.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3624) DUF4131 PF13567.6 AJD70615.1 - 3.4 7.3 9.6 4.3 7.0 9.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) FA_desaturase PF00487.24 AJD70615.1 - 5 6.9 8.1 5.2 6.8 8.1 1.2 1 0 0 1 1 1 0 Fatty acid desaturase DUF4156 PF13698.6 AJD70616.1 - 0.0025 18.1 0.1 0.0042 17.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) YbjQ_1 PF01906.17 AJD70616.1 - 0.0026 18.4 0.0 0.0046 17.6 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF2530 PF10745.9 AJD70616.1 - 0.13 12.6 5.0 6.4 7.1 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) DUF885 PF05960.11 AJD70617.1 - 7.5e-83 280.0 5.8 8.6e-83 279.8 5.8 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) DUF3744 PF12558.8 AJD70617.1 - 0.093 13.5 0.6 0.25 12.2 0.0 2.1 3 0 0 3 3 3 0 ATP-binding cassette cobalt transporter DPPIV_N PF00930.21 AJD70618.1 - 8.7e-95 317.5 0.0 1.9e-94 316.4 0.0 1.6 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9 PF00326.21 AJD70618.1 - 3.9e-56 189.9 0.5 6.3e-56 189.2 0.5 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 AJD70618.1 - 3.8e-14 52.9 0.9 9.3e-09 35.3 1.5 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 AJD70618.1 - 7e-07 29.0 0.1 4.3e-06 26.4 0.1 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 AJD70618.1 - 1.9e-05 24.6 1.0 0.00064 19.6 0.2 3.0 2 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AJD70618.1 - 2.1e-05 23.9 0.8 0.018 14.3 0.2 2.5 2 1 0 3 3 3 2 Serine aminopeptidase, S33 BAAT_C PF08840.11 AJD70618.1 - 5.1e-05 23.3 0.0 0.0096 15.9 0.0 2.2 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.20 AJD70618.1 - 0.026 14.2 0.2 0.049 13.3 0.2 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold AXE1 PF05448.12 AJD70618.1 - 0.028 13.1 0.1 0.068 11.8 0.1 1.6 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) PD40 PF07676.12 AJD70618.1 - 0.035 14.1 6.3 4.1 7.4 0.0 4.8 6 0 0 6 6 6 0 WD40-like Beta Propeller Repeat Esterase PF00756.20 AJD70618.1 - 0.035 13.7 0.4 0.28 10.8 0.4 2.1 1 1 0 1 1 1 0 Putative esterase GST_N PF02798.20 AJD70619.1 - 9.1e-15 54.8 0.0 1.5e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AJD70619.1 - 5.8e-13 48.9 0.0 9.5e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 AJD70619.1 - 2.5e-11 43.8 0.0 4.1e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD70619.1 - 8.1e-10 38.9 0.0 1.4e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AJD70619.1 - 3e-07 30.5 0.0 5e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AJD70619.1 - 2e-06 27.7 0.6 3.9e-06 26.8 0.6 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain TonB_dep_Rec PF00593.24 AJD70620.1 - 5.5e-36 125.4 39.9 5.5e-36 125.4 39.9 2.6 1 1 2 3 3 3 1 TonB dependent receptor Plug PF07715.15 AJD70620.1 - 9e-16 58.4 1.4 4e-15 56.3 1.4 2.2 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain SapC PF07277.11 AJD70621.1 - 7.6e-66 221.9 0.0 8.5e-66 221.7 0.0 1.0 1 0 0 1 1 1 1 SapC Cupin_8 PF13621.6 AJD70622.1 - 5.5e-57 193.4 0.0 7.2e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Cupin-like domain Cupin_4 PF08007.12 AJD70622.1 - 0.00038 20.0 0.0 0.00054 19.5 0.0 1.2 1 0 0 1 1 1 1 Cupin superfamily protein Trp_halogenase PF04820.14 AJD70623.1 - 1.4e-189 630.7 0.1 1.6e-189 630.5 0.1 1.0 1 0 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.6 AJD70623.1 - 0.0002 21.4 0.1 0.042 13.8 0.2 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 AJD70623.1 - 0.0032 16.7 0.0 0.033 13.4 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AJD70623.1 - 0.026 13.9 0.3 1.6 7.9 0.4 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AJD70623.1 - 0.035 14.3 1.0 0.12 12.6 1.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 AJD70623.1 - 0.13 12.9 0.8 0.32 11.6 0.8 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD70623.1 - 0.23 10.1 0.2 0.33 9.6 0.2 1.2 1 0 0 1 1 1 0 HI0933-like protein DAO PF01266.24 AJD70623.1 - 0.31 10.6 5.3 0.62 9.6 5.3 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase TonB_C PF03544.14 AJD70624.1 - 1.4e-19 70.3 0.2 2.5e-17 63.1 0.0 2.8 2 0 0 2 2 2 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AJD70624.1 - 0.028 14.6 0.0 0.082 13.2 0.0 1.8 1 0 0 1 1 1 0 TonB C terminal Raftlin PF15250.6 AJD70624.1 - 0.26 10.0 4.9 0.42 9.3 4.9 1.3 1 0 0 1 1 1 0 Raftlin SAPS PF04499.15 AJD70624.1 - 0.76 8.5 4.2 0.9 8.2 4.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF4746 PF15928.5 AJD70624.1 - 0.91 8.9 7.0 1.3 8.3 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) Roughex PF06020.11 AJD70624.1 - 1.3 8.0 9.5 2 7.4 9.5 1.2 1 0 0 1 1 1 0 Drosophila roughex protein Presenilin PF01080.17 AJD70624.1 - 1.7 7.3 8.5 2.9 6.6 8.5 1.3 1 0 0 1 1 1 0 Presenilin ALMT PF11744.8 AJD70624.1 - 2 7.1 3.7 2.9 6.6 3.7 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter GREB1 PF15782.5 AJD70624.1 - 2.4 5.2 3.9 2.7 5.0 3.9 1.1 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Plasmodium_Vir PF05795.11 AJD70624.1 - 2.4 7.5 5.0 1.2 8.5 2.6 1.6 2 0 0 2 2 2 0 Plasmodium vivax Vir protein Hid1 PF12722.7 AJD70624.1 - 4.7 5.2 6.1 6 4.9 6.1 1.2 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein ABC2_membrane_2 PF12679.7 AJD70625.1 - 3.8e-23 82.2 2.9 6.9e-23 81.3 2.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 AJD70625.1 - 2.8e-19 69.4 0.2 3.2e-19 69.3 0.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 AJD70625.1 - 7.1e-07 28.9 9.5 4.3e-06 26.3 7.2 2.2 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 AJD70625.1 - 0.00022 21.2 4.1 0.00022 21.2 4.1 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 AJD70626.1 - 1e-28 100.5 0.0 1.4e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70626.1 - 1.1e-08 35.3 0.0 0.0029 17.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AJD70626.1 - 0.0015 19.0 0.0 0.002 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain MukB PF04310.12 AJD70626.1 - 0.0026 17.6 0.3 0.0045 16.8 0.1 1.5 2 0 0 2 2 2 1 MukB N-terminal AAA_30 PF13604.6 AJD70626.1 - 0.007 16.1 0.7 0.02 14.6 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AJD70626.1 - 0.0088 16.2 0.6 0.043 14.0 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD70626.1 - 0.012 16.0 0.2 0.029 14.7 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 AJD70626.1 - 0.013 15.2 0.3 0.024 14.4 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 AJD70626.1 - 0.039 13.4 0.2 0.9 8.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 AJD70626.1 - 0.051 14.0 0.0 0.92 9.9 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 AJD70626.1 - 0.076 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 AJD70626.1 - 0.08 12.6 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 AJD70626.1 - 0.087 13.1 0.5 0.29 11.4 0.4 2.1 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 AJD70626.1 - 0.087 12.5 0.7 0.99 9.1 0.2 2.5 2 1 1 3 3 3 0 AAA domain AAA_14 PF13173.6 AJD70626.1 - 0.12 12.5 0.0 6.6 6.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 AJD70626.1 - 0.13 11.9 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain LPD18 PF18832.1 AJD70626.1 - 0.16 12.0 0.0 0.4 10.8 0.0 1.7 2 0 0 2 2 1 0 Large polyvalent protein-associated domain 18 Abhydrolase_1 PF00561.20 AJD70627.1 - 1.2e-20 74.2 0.0 3.9e-19 69.3 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 AJD70627.1 - 4.3e-20 71.8 0.2 2.4e-19 69.3 0.0 2.2 2 0 0 2 2 2 1 TAP-like protein Hydrolase_4 PF12146.8 AJD70627.1 - 8.1e-07 28.6 0.5 0.16 11.2 0.8 3.6 2 1 0 2 2 2 2 Serine aminopeptidase, S33 HTH_3 PF01381.22 AJD70628.1 - 2.6e-17 62.6 0.0 2.9e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AJD70628.1 - 2.6e-14 53.0 0.0 2.8e-14 52.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 AJD70628.1 - 1.8e-13 50.6 0.1 2.1e-13 50.4 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 AJD70628.1 - 6.1e-06 26.0 0.0 7.1e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD70628.1 - 2e-05 24.0 0.5 0.00015 21.2 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 AJD70628.1 - 0.0001 22.2 0.0 0.00014 21.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 AJD70628.1 - 0.00073 19.3 0.1 0.0016 18.2 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 AJD70628.1 - 0.0017 17.9 0.1 0.0036 16.8 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 AJD70628.1 - 0.0017 18.0 0.0 0.0067 16.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 AJD70628.1 - 0.0029 17.5 0.0 0.0031 17.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 AJD70628.1 - 0.0041 17.5 0.0 0.0046 17.4 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4_2 PF08281.12 AJD70628.1 - 0.0053 16.4 0.0 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 AJD70628.1 - 0.012 15.5 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 AJD70628.1 - 0.026 14.6 0.2 0.05 13.7 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AJD70628.1 - 0.031 14.1 0.2 0.081 12.8 0.1 1.8 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 AJD70628.1 - 0.04 13.9 0.0 0.1 12.6 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR PF01047.22 AJD70628.1 - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 MarR family YdaS_antitoxin PF15943.5 AJD70628.1 - 0.12 12.3 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_ECF PF07638.11 AJD70628.1 - 0.13 12.2 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor RseC_MucC PF04246.12 AJD70629.1 - 0.0099 15.8 0.7 0.0099 15.8 0.7 3.1 2 2 1 3 3 3 1 Positive regulator of sigma(E), RseC/MucC DAD PF02109.16 AJD70629.1 - 0.1 13.0 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 DAD family DUF2070 PF09843.9 AJD70629.1 - 0.31 9.3 1.8 0.38 9.0 1.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4175 PF13779.6 AJD70629.1 - 1.6 6.6 11.5 0.083 10.8 0.4 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4175) Transgly_assoc PF04226.13 AJD70629.1 - 2.2 8.6 13.3 0.34 11.2 3.5 2.5 2 0 0 2 2 2 0 Transglycosylase associated protein Glyco_hydro_39 PF01229.17 AJD70630.1 - 7.5e-95 318.3 0.0 9.4e-95 318.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 39 Cellulase PF00150.18 AJD70630.1 - 0.00014 21.4 0.1 0.00018 21.0 0.1 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_44 PF12891.7 AJD70630.1 - 0.0044 17.0 0.1 0.012 15.6 0.1 1.6 1 1 0 1 1 1 1 Glycoside hydrolase family 44 Trns_repr_metal PF02583.17 AJD70631.1 - 1.1e-21 76.9 0.3 1.3e-21 76.7 0.3 1.0 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor Cation_efflux PF01545.21 AJD70632.1 - 6.3e-38 130.5 8.1 8e-38 130.2 8.1 1.1 1 0 0 1 1 1 1 Cation efflux family PM0188 PF11477.8 AJD70632.1 - 0.15 11.2 0.0 0.22 10.7 0.0 1.1 1 0 0 1 1 1 0 Sialyltransferase PMO188 PepSY_TM PF03929.16 AJD70633.1 - 9.9e-12 45.1 18.8 5.7e-08 32.8 13.4 2.3 2 1 0 2 2 2 2 PepSY-associated TM region TonB_dep_Rec PF00593.24 AJD70634.1 - 1.2e-47 163.9 32.4 1.2e-47 163.9 32.4 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AJD70634.1 - 5.4e-21 75.2 1.1 1.3e-20 74.0 1.1 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70634.1 - 3.2e-05 23.1 2.4 3.2e-05 23.1 2.4 2.6 3 1 0 3 3 3 1 Outer membrane protein beta-barrel family DUF4131 PF13567.6 AJD70634.1 - 0.016 14.9 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3088 PF11287.8 AJD70635.1 - 2.6e-29 101.3 0.0 2.9e-29 101.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3088) Thioredoxin_9 PF14595.6 AJD70635.1 - 0.14 11.9 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin HTH_18 PF12833.7 AJD70636.1 - 3.5e-23 81.6 1.5 6e-23 80.9 1.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD70636.1 - 2.3e-15 56.2 0.1 2.5e-06 27.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DJ-1_PfpI PF01965.24 AJD70636.1 - 3.2e-15 56.3 0.0 4.4e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family TetR_N PF00440.23 AJD70636.1 - 0.0015 18.3 0.0 0.17 11.7 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family DUF2802 PF10975.8 AJD70636.1 - 0.15 12.3 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) NAD_binding_1 PF00175.21 AJD70637.1 - 7.6e-16 58.7 0.0 1e-15 58.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 AJD70637.1 - 2.6e-10 40.5 0.0 4.6e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain ABC_tran PF00005.27 AJD70638.1 - 2.1e-27 96.3 0.0 3.2e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AJD70638.1 - 7.1e-13 49.0 1.6 2.3e-06 27.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AJD70638.1 - 0.00026 20.7 0.5 0.00078 19.1 0.2 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 AJD70638.1 - 0.00064 19.2 0.3 0.48 9.8 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 AJD70638.1 - 0.00085 19.1 0.0 0.087 12.5 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain DUF4162 PF13732.6 AJD70638.1 - 0.0023 18.6 0.0 0.0055 17.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 AJD70638.1 - 0.0065 16.2 0.3 0.068 12.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AJD70638.1 - 0.0074 16.8 0.2 0.012 16.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain ACT PF01842.25 AJD70638.1 - 0.034 13.9 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 ACT domain SbcCD_C PF13558.6 AJD70638.1 - 0.035 14.4 0.0 0.23 11.7 0.0 2.3 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 AJD70638.1 - 0.049 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 AJD70638.1 - 0.08 12.8 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 NTPase SRP54 PF00448.22 AJD70638.1 - 0.097 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 AJD70638.1 - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 AJD70638.1 - 0.17 11.6 0.2 18 5.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 AJD70638.1 - 0.28 10.9 0.2 25 4.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 AJD70639.1 - 1.8e-35 122.3 19.3 1.8e-35 122.3 19.3 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 AJD70639.1 - 4.2e-05 22.8 23.0 5.8e-05 22.4 23.0 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3800 PF12686.7 AJD70641.1 - 0.0063 17.1 0.0 0.008 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) ApbA PF02558.16 AJD70642.1 - 1.5e-40 138.3 0.0 2.2e-40 137.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 AJD70642.1 - 2.9e-16 59.8 0.1 4.6e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.17 AJD70642.1 - 0.00064 20.3 0.4 0.0017 18.9 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_4 PF13579.6 AJD70642.1 - 0.0018 18.7 5.4 0.0062 17.0 5.2 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain FAD_binding_3 PF01494.19 AJD70642.1 - 0.046 13.0 0.4 0.072 12.3 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain DUF1772 PF08592.11 AJD70643.1 - 6.4e-06 26.5 1.4 0.008 16.5 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1772) DUF1003 PF06210.11 AJD70643.1 - 0.099 12.7 0.3 0.18 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) 4HBT PF03061.22 AJD70644.1 - 2.5e-18 66.2 0.1 3.3e-18 65.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 AJD70644.1 - 0.00027 21.4 0.0 0.00032 21.2 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF3592 PF12158.8 AJD70645.1 - 1.9e-05 24.8 2.4 0.00017 21.7 2.4 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) LPG_synthase_TM PF03706.13 AJD70645.1 - 0.0019 17.8 2.3 0.0023 17.5 2.3 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF4131 PF13567.6 AJD70645.1 - 6.4 6.4 6.9 1.7 8.3 3.9 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Thioredoxin PF00085.20 AJD70646.1 - 3.2e-11 43.1 0.0 3.7e-11 42.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AJD70646.1 - 2.4e-08 34.4 0.1 6.6e-07 29.8 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 AJD70646.1 - 0.047 13.5 0.0 0.08 12.8 0.0 1.4 1 1 0 1 1 1 0 F plasmid transfer operon protein OST3_OST6 PF04756.13 AJD70646.1 - 0.066 12.6 0.0 0.078 12.3 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Flavodoxin_1 PF00258.25 AJD70647.1 - 5e-07 30.0 0.0 6.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 AJD70647.1 - 2.1e-06 27.5 0.0 2.8e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_NdrI PF07972.11 AJD70647.1 - 0.021 15.0 0.0 0.033 14.4 0.0 1.4 1 1 0 1 1 1 0 NrdI Flavodoxin like Flavodoxin_5 PF12724.7 AJD70647.1 - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 1 0 1 1 1 0 Flavodoxin domain Ribonuc_red_sm PF00268.21 AJD70648.1 - 2.5e-69 233.9 0.3 3.1e-69 233.5 0.3 1.0 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Ribonuc_red_lgC PF02867.15 AJD70649.1 - 2.6e-146 488.2 0.0 3.5e-144 481.2 0.0 2.1 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 AJD70649.1 - 2.4e-15 56.3 0.0 6.9e-15 54.8 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain DUF475 PF04332.15 AJD70650.1 - 3.1e-129 431.0 15.2 4.1e-129 430.6 15.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 AJD70650.1 - 6.6e-20 71.6 15.9 8e-11 41.9 7.1 2.2 1 1 1 2 2 2 2 Integral membrane protein TerC family DUF2070 PF09843.9 AJD70650.1 - 1 7.6 19.0 0.0043 15.4 5.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) ATP-grasp_5 PF13549.6 AJD70651.1 - 5e-75 251.8 1.5 7.8e-75 251.1 1.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 AJD70651.1 - 5.3e-48 162.3 3.9 6.1e-48 162.1 1.7 2.2 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 AJD70651.1 - 1.2e-19 70.9 4.1 8.4e-19 68.2 0.2 3.5 4 0 0 4 4 4 1 CoA binding domain Acetyltransf_3 PF13302.7 AJD70651.1 - 3.1e-09 37.6 0.0 7e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD70651.1 - 0.00017 21.8 0.3 0.00068 19.9 0.1 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family CoA_binding PF02629.19 AJD70651.1 - 0.00031 21.4 0.0 0.00071 20.2 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain Acetyltransf_10 PF13673.7 AJD70651.1 - 0.013 15.4 0.0 0.04 13.9 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AJD70651.1 - 0.22 11.7 0.0 0.45 10.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MgtE PF01769.16 AJD70652.1 - 1.5e-30 106.1 4.8 2.9e-30 105.2 4.8 1.5 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.17 AJD70652.1 - 1.9e-19 70.1 3.5 4.2e-19 69.0 3.5 1.6 1 0 0 1 1 1 1 MgtE intracellular N domain CBS PF00571.28 AJD70652.1 - 2.5e-13 50.2 7.5 1.8e-09 37.9 1.5 3.0 3 0 0 3 3 3 2 CBS domain FliG_M PF14841.6 AJD70652.1 - 0.0015 18.7 1.5 2.2 8.6 0.1 3.5 2 1 1 3 3 3 2 FliG middle domain FliG_N PF14842.6 AJD70652.1 - 0.033 14.7 0.9 11 6.6 0.0 3.4 2 1 0 3 3 3 0 FliG N-terminal domain Carb_anhydrase PF00194.21 AJD70653.1 - 4.4e-40 137.8 0.1 1.6e-39 136.0 0.1 1.7 1 1 0 1 1 1 1 Eukaryotic-type carbonic anhydrase Peptidase_M24 PF00557.24 AJD70653.1 - 0.13 11.9 0.2 0.2 11.3 0.2 1.2 1 0 0 1 1 1 0 Metallopeptidase family M24 Na_H_Exchanger PF00999.21 AJD70654.1 - 3.8e-62 210.3 43.6 4.9e-62 209.9 43.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 AJD70654.1 - 1.7e-27 95.9 0.0 4e-27 94.8 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 AJD70654.1 - 0.026 14.4 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 AJD70654.1 - 0.039 13.3 0.0 0.088 12.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain G6PD_C PF02781.16 AJD70655.1 - 1.7e-109 365.5 0.0 2.4e-109 365.0 0.0 1.2 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, C-terminal domain G6PD_N PF00479.22 AJD70655.1 - 1.5e-54 185.3 0.0 2.2e-54 184.8 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF1481 PF07356.12 AJD70655.1 - 0.083 12.6 0.2 0.16 11.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1481) Glyco_hydro_15 PF00723.21 AJD70656.1 - 1.4e-55 188.9 0.0 4e-53 180.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 15 TPR_4 PF07721.14 AJD70656.1 - 3.1 8.7 10.8 0.5 11.1 0.2 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat LMWPc PF01451.21 AJD70657.1 - 0.00066 20.1 0.0 0.0016 18.8 0.0 1.7 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Ank_2 PF12796.7 AJD70658.1 - 2.9e-67 223.3 3.9 1.6e-10 41.4 0.0 10.5 4 3 6 11 11 11 10 Ankyrin repeats (3 copies) Ank_4 PF13637.6 AJD70658.1 - 1.4e-54 181.8 25.8 2.4e-07 31.2 0.1 15.9 7 5 10 17 17 17 13 Ankyrin repeats (many copies) Ank_5 PF13857.6 AJD70658.1 - 1.2e-46 156.1 45.2 9.6e-06 25.8 0.3 13.5 9 3 5 15 15 15 13 Ankyrin repeats (many copies) Ank_3 PF13606.6 AJD70658.1 - 2.1e-43 141.3 20.8 0.0047 17.3 0.0 19.4 20 0 0 20 20 20 12 Ankyrin repeat Ank PF00023.30 AJD70658.1 - 5.9e-35 118.2 53.0 0.0018 18.6 0.6 17.5 17 1 0 17 17 17 11 Ankyrin repeat YcgL PF05166.13 AJD70659.1 - 1.8e-24 85.8 0.0 2e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 YcgL domain Ketoacyl-synt_C PF02801.22 AJD70660.1 - 4e-29 101.0 1.3 1.3e-28 99.4 0.2 2.1 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 AJD70660.1 - 3.7e-21 75.8 3.8 3e-20 72.9 3.2 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_N PF00108.23 AJD70660.1 - 0.00077 18.9 0.8 0.0058 16.0 0.6 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_2 PF13723.6 AJD70661.1 - 5.2e-22 78.6 0.3 6.8e-22 78.2 0.3 1.1 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Glycos_transf_2 PF00535.26 AJD70662.1 - 2e-19 70.1 0.0 4.2e-19 69.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AJD70662.1 - 4.9e-08 33.1 0.0 8.4e-08 32.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AJD70662.1 - 0.0005 20.5 0.0 0.00089 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Trp_halogenase PF04820.14 AJD70663.1 - 9.1e-17 61.0 0.1 8.5e-10 38.1 0.0 2.6 1 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 AJD70663.1 - 1.4e-10 41.0 0.0 1.9e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 AJD70663.1 - 5.9e-10 39.2 0.1 2.1e-05 24.3 0.0 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 AJD70663.1 - 8.2e-07 28.4 0.0 0.00027 20.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 AJD70663.1 - 1.9e-06 28.0 0.2 8.4e-06 25.9 0.0 2.1 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 AJD70663.1 - 0.00026 20.3 0.0 0.0006 19.1 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 AJD70663.1 - 0.00055 19.3 0.0 0.005 16.1 0.0 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AJD70663.1 - 0.0016 19.0 0.0 0.57 10.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AJD70663.1 - 0.0031 16.7 0.1 0.011 14.9 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 AJD70663.1 - 0.0068 16.4 0.1 0.49 10.4 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Mqo PF06039.15 AJD70663.1 - 0.0076 14.8 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) FAD_oxidored PF12831.7 AJD70663.1 - 0.022 14.1 0.0 2.3 7.5 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase TPR_6 PF13174.6 AJD70663.1 - 0.062 14.0 0.1 1.5 9.6 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat K_oxygenase PF13434.6 AJD70663.1 - 0.093 11.8 0.1 0.23 10.6 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) adh_short_C2 PF13561.6 AJD70665.1 - 1.8e-50 171.7 5.9 2.1e-50 171.5 5.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD70665.1 - 6.5e-48 162.8 2.1 7.8e-48 162.5 2.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD70665.1 - 3.7e-25 88.9 3.6 6e-25 88.2 3.6 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AJD70665.1 - 2.2e-06 27.3 1.7 9.3e-06 25.3 1.7 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AJD70665.1 - 0.00095 19.1 2.5 0.0012 18.8 2.5 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Glyco_transf_4 PF13439.6 AJD70665.1 - 0.025 14.6 0.1 3.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 3Beta_HSD PF01073.19 AJD70665.1 - 0.027 13.5 0.0 0.032 13.2 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 AJD70665.1 - 0.03 13.7 0.1 0.067 12.6 0.1 1.5 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 AJD70665.1 - 0.039 14.5 2.2 0.059 13.9 0.6 2.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Polysacc_synt_2 PF02719.15 AJD70665.1 - 0.059 12.5 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Shikimate_DH PF01488.20 AJD70665.1 - 0.062 13.4 0.1 0.098 12.7 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase RmlD_sub_bind PF04321.17 AJD70665.1 - 0.065 12.3 0.2 0.15 11.1 0.2 1.6 1 0 0 1 1 1 0 RmlD substrate binding domain CcmE PF03100.15 AJD70667.1 - 0.042 13.8 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 CcmE MMPL PF03176.15 AJD70668.1 - 5e-10 38.8 39.9 3.1e-07 29.6 7.7 2.6 2 1 0 2 2 2 2 MMPL family ACR_tran PF00873.19 AJD70668.1 - 0.017 12.8 15.5 0.091 10.4 1.2 2.9 3 0 0 3 3 3 0 AcrB/AcrD/AcrF family LolA PF03548.15 AJD70671.1 - 0.0063 16.2 0.0 0.51 10.0 0.0 2.1 2 0 0 2 2 2 2 Outer membrane lipoprotein carrier protein LolA Lip_A_acyltrans PF03279.13 AJD70672.1 - 2.7e-07 30.0 0.0 2.9e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase FabA PF07977.13 AJD70673.1 - 2.3e-07 30.5 0.4 7.7e-07 28.8 0.4 1.8 1 1 0 1 1 1 1 FabA-like domain PS-DH PF14765.6 AJD70673.1 - 3e-05 23.4 0.2 3.2e-05 23.3 0.2 1.1 1 0 0 1 1 1 1 Polyketide synthase dehydratase MaoC_dehydratas PF01575.19 AJD70673.1 - 0.0049 16.4 0.0 0.0056 16.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain Acyltransferase PF01553.21 AJD70674.1 - 2.9e-29 101.4 0.0 3.8e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase PP-binding PF00550.25 AJD70676.1 - 6.5e-09 36.0 0.4 1.1e-08 35.3 0.4 1.5 1 1 0 1 1 1 1 Phosphopantetheine attachment site Trp_halogenase PF04820.14 AJD70677.1 - 5.8e-31 107.8 0.2 2.6e-17 62.8 0.1 2.1 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 AJD70677.1 - 1.7e-18 67.0 0.0 2.3e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 AJD70677.1 - 4.6e-08 32.6 0.4 1.2e-07 31.2 0.2 1.8 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AJD70677.1 - 2.4e-07 30.9 0.6 2e-06 27.9 0.1 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 AJD70677.1 - 3.6e-07 29.9 0.4 8.5e-07 28.7 0.2 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 AJD70677.1 - 5.5e-07 29.5 1.5 2.3e-06 27.4 0.2 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 AJD70677.1 - 8.1e-07 28.5 0.0 1.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 AJD70677.1 - 4.3e-06 26.2 0.0 5.6e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AJD70677.1 - 1e-05 24.5 0.0 2.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 AJD70677.1 - 5e-05 23.8 0.0 8.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AJD70677.1 - 0.00026 20.4 0.1 0.00039 19.8 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 AJD70677.1 - 0.00072 18.7 0.4 0.0019 17.3 0.1 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 AJD70677.1 - 0.0012 18.2 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 AJD70677.1 - 0.0073 15.6 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family CysA_C_terminal PF17850.1 AJD70678.1 - 0.22 12.1 2.0 0.97 10.1 0.1 2.6 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AMP-binding PF00501.28 AJD70680.1 - 1.7e-18 66.4 4.6 2.9e-18 65.7 1.2 2.3 2 1 0 2 2 2 1 AMP-binding enzyme Peptidase_S9 PF00326.21 AJD70681.1 - 3.6e-42 144.2 0.1 5.5e-42 143.7 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DPPIV_N PF00930.21 AJD70681.1 - 7e-18 64.5 0.0 4.3e-15 55.3 0.0 2.7 3 0 0 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S15 PF02129.18 AJD70681.1 - 7.1e-11 42.2 3.9 4e-10 39.8 0.1 3.0 2 1 1 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 AJD70681.1 - 0.00066 19.3 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 AJD70681.1 - 0.003 16.9 0.4 0.0078 15.5 0.1 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 COesterase PF00135.28 AJD70681.1 - 0.011 14.6 0.1 0.017 14.1 0.1 1.1 1 0 0 1 1 1 0 Carboxylesterase family Chlorophyllase2 PF12740.7 AJD70681.1 - 0.08 11.8 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 Chlorophyllase enzyme DUF2569 PF10754.9 AJD70683.1 - 0.27 11.7 3.5 0.42 11.0 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) Coprogen_oxidas PF01218.18 AJD70684.1 - 1.3e-129 431.2 0.0 1.5e-129 431.0 0.0 1.0 1 0 0 1 1 1 1 Coproporphyrinogen III oxidase DNA_pol_A PF00476.20 AJD70685.1 - 2.6e-146 487.5 0.0 3.3e-146 487.2 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 AJD70685.1 - 1.3e-47 161.7 0.0 2.3e-47 160.9 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain DNA_pol_A_exo1 PF01612.20 AJD70685.1 - 3.1e-36 124.7 0.0 8.3e-36 123.3 0.0 1.7 2 0 0 2 2 2 1 3'-5' exonuclease 5_3_exonuc PF01367.20 AJD70685.1 - 6.3e-28 97.2 0.0 1.5e-27 96.0 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF2782 PF11191.8 AJD70686.1 - 3.8e-15 55.9 0.0 4.9e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2782) ImpA_N PF06812.12 AJD70687.1 - 1.8e-34 118.4 1.6 2.5e-34 117.9 0.6 1.8 2 0 0 2 2 2 1 ImpA, N-terminal, type VI secretion system ALIX_LYPXL_bnd PF13949.6 AJD70687.1 - 0.15 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Haemagg_act PF05860.13 AJD70688.1 - 9.1e-19 67.5 7.3 9.1e-19 67.5 7.3 6.5 8 0 0 8 8 8 1 haemagglutination activity domain MoaF PF10703.9 AJD70688.1 - 1.2e-05 25.2 10.4 1.9 8.4 0.0 7.5 8 0 0 8 8 8 3 MoaF N-terminal domain ShlB PF03865.13 AJD70689.1 - 1.4e-29 103.5 0.1 1.9e-29 103.1 0.1 1.1 1 0 0 1 1 1 1 Haemolysin secretion/activation protein ShlB/FhaC/HecB POTRA_2 PF08479.11 AJD70689.1 - 5e-10 39.1 0.5 2.6e-07 30.4 0.0 3.1 3 0 0 3 3 3 2 POTRA domain, ShlB-type Bac_surface_Ag PF01103.23 AJD70689.1 - 0.0034 16.9 3.4 0.029 13.9 1.4 2.8 2 1 0 2 2 2 1 Surface antigen POTRA PF07244.15 AJD70689.1 - 0.05 14.2 0.0 18 6.0 0.0 2.9 2 1 1 3 3 3 0 Surface antigen variable number repeat SHOCT PF09851.9 AJD70690.1 - 0.032 14.0 0.7 0.057 13.2 0.7 1.4 1 0 0 1 1 1 0 Short C-terminal domain DUF1707 PF08044.11 AJD70690.1 - 0.038 14.0 1.8 0.038 14.0 1.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Med13_C PF06333.12 AJD70690.1 - 0.042 13.1 0.0 0.045 13.0 0.0 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain GvpG PF05120.12 AJD70690.1 - 0.043 13.8 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Pkinase PF00069.25 AJD70691.1 - 3.1e-35 121.8 0.0 4.6e-35 121.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 AJD70691.1 - 2.3e-23 82.8 0.0 3.4e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FGE-sulfatase PF03781.16 AJD70691.1 - 1.1e-16 61.2 2.8 6.2e-16 58.7 2.8 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 TPR_19 PF14559.6 AJD70691.1 - 0.37 11.3 22.5 0.19 12.3 0.5 5.4 4 2 1 5 5 5 0 Tetratricopeptide repeat PP2C_2 PF13672.6 AJD70692.1 - 1.7e-17 63.8 0.2 2.3e-17 63.3 0.2 1.1 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 AJD70692.1 - 2.5e-06 27.3 0.0 4.6e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Protein phosphatase 2C TagF_N PF09867.9 AJD70693.1 - 2e-32 112.1 0.3 7.8e-32 110.1 0.1 1.8 1 1 1 2 2 2 1 TagF N-terminal domain, Type VI secretion system-associated AvrL567-A PF11529.8 AJD70693.1 - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 Melampsora lini avirulence protein AvrL567-A ImcF-related_N PF14331.6 AJD70694.1 - 1.2e-90 303.4 7.1 7.2e-90 300.8 5.3 2.4 2 0 0 2 2 2 1 ImcF-related N-terminal domain IcmF-related PF06761.12 AJD70694.1 - 8.4e-60 202.8 8.0 2.5e-59 201.3 8.0 1.8 1 0 0 1 1 1 1 Intracellular multiplication and human macrophage-killing IcmF_C PF06744.12 AJD70694.1 - 7.5e-43 146.5 0.0 1.5e-42 145.5 0.0 1.6 1 0 0 1 1 1 1 Type VI secretion protein IcmF C-terminal AAA_22 PF13401.6 AJD70694.1 - 0.0027 18.0 0.0 0.018 15.4 0.0 2.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AJD70694.1 - 0.037 14.1 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 AJD70694.1 - 0.057 13.9 0.0 0.18 12.3 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 AJD70694.1 - 0.073 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 AJD70694.1 - 0.076 13.2 0.3 0.47 10.6 0.3 2.5 1 1 0 1 1 1 0 AAA domain RAB3GAP2_C PF14656.6 AJD70694.1 - 0.26 9.5 0.1 0.39 8.9 0.1 1.1 1 0 0 1 1 1 0 Rab3 GTPase-activating protein regulatory subunit C-terminus DotU PF09850.9 AJD70695.1 - 5.6e-67 225.4 3.1 5.6e-67 225.4 3.1 1.5 2 0 0 2 2 2 1 Type VI secretion system protein DotU OmpA PF00691.20 AJD70695.1 - 2e-11 44.1 0.0 3.3e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 OmpA family T6SS_VasE PF05936.12 AJD70696.1 - 3.4e-151 503.8 0.2 3.8e-151 503.6 0.2 1.0 1 0 0 1 1 1 1 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE FHA PF00498.26 AJD70697.1 - 4.7e-15 55.7 0.0 7.1e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 AJD70697.1 - 3.1e-06 27.4 0.0 4.8e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Phage_GPD PF05954.11 AJD70699.1 - 3e-79 266.5 1.4 5.4e-79 265.6 1.4 1.4 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Phage_base_V PF04717.12 AJD70699.1 - 0.024 14.6 0.1 0.057 13.3 0.1 1.6 1 0 0 1 1 1 0 Type VI secretion system, phage-baseplate injector TPR_2 PF07719.17 AJD70700.1 - 4.7e-16 57.5 23.8 3.9e-07 29.7 0.2 7.5 7 1 0 7 7 7 3 Tetratricopeptide repeat TPR_14 PF13428.6 AJD70700.1 - 1.6e-15 56.4 36.4 6.7e-05 23.4 1.8 7.3 2 1 5 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 AJD70700.1 - 1.1e-13 50.6 14.1 9.1e-06 25.3 0.2 6.0 3 2 3 6 6 6 3 TPR repeat TPR_16 PF13432.6 AJD70700.1 - 1.7e-12 47.8 40.4 1.8e-06 28.5 10.1 5.1 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_1 PF00515.28 AJD70700.1 - 1.9e-12 46.4 16.2 8.5e-08 31.7 0.1 5.8 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_17 PF13431.6 AJD70700.1 - 3.1e-12 46.0 17.6 0.013 15.8 0.1 6.3 6 0 0 6 6 6 4 Tetratricopeptide repeat Methyltransf_11 PF08241.12 AJD70700.1 - 1.3e-11 45.0 0.0 4.4e-11 43.3 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AJD70700.1 - 1.7e-11 44.2 0.0 3.7e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TPR_8 PF13181.6 AJD70700.1 - 2.8e-11 42.7 3.8 0.00022 21.2 0.0 5.7 6 1 0 6 6 6 2 Tetratricopeptide repeat TPR_7 PF13176.6 AJD70700.1 - 4.8e-11 41.9 15.1 1.9e-06 27.5 0.2 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat Methyltransf_25 PF13649.6 AJD70700.1 - 2e-10 41.2 0.4 1.2e-09 38.7 0.0 2.5 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 AJD70700.1 - 2.6e-10 40.9 0.2 1.5e-09 38.5 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain TPR_19 PF14559.6 AJD70700.1 - 3.9e-10 40.1 24.1 0.00015 22.2 4.6 4.6 2 1 2 4 4 4 3 Tetratricopeptide repeat Methyltransf_31 PF13847.6 AJD70700.1 - 5.7e-10 39.2 0.0 1.3e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TPR_12 PF13424.6 AJD70700.1 - 8e-08 32.5 33.3 0.00016 21.9 4.6 4.5 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 AJD70700.1 - 2e-06 27.5 28.1 1.5e-05 24.7 1.0 6.3 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.6 AJD70700.1 - 0.00077 19.9 13.5 0.77 10.5 0.2 6.2 6 0 0 6 6 6 1 Tetratricopeptide repeat NARP1 PF12569.8 AJD70700.1 - 0.0018 17.3 0.3 0.61 8.9 0.0 2.4 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 AJD70700.1 - 0.0021 17.3 11.6 0.19 10.9 1.5 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat DUF627 PF04781.12 AJD70700.1 - 0.0033 17.4 2.5 0.14 12.1 0.2 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF627) TPR_9 PF13371.6 AJD70700.1 - 0.0072 16.5 27.5 0.013 15.6 3.8 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat NodS PF05401.11 AJD70700.1 - 0.03 14.0 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) TOM20_plant PF06552.12 AJD70700.1 - 0.033 13.9 0.1 3.5 7.3 0.0 2.5 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 TAF1_subA PF14929.6 AJD70700.1 - 0.08 12.4 0.4 0.12 11.8 0.4 1.3 1 0 0 1 1 1 0 TAF RNA Polymerase I subunit A TPR_4 PF07721.14 AJD70700.1 - 0.17 12.6 37.8 1.1 10.1 0.0 7.6 6 1 1 7 7 7 0 Tetratricopeptide repeat BTAD PF03704.17 AJD70700.1 - 1.8 9.0 20.3 0.37 11.2 1.7 3.8 1 1 1 2 2 2 0 Bacterial transcriptional activator domain SMBP PF16785.5 AJD70700.1 - 4.3 7.6 8.5 7.7 6.8 0.5 2.9 3 0 0 3 3 2 0 Small metal-binding protein Alkyl_sulf_dimr PF14863.6 AJD70700.1 - 4.6 7.7 6.4 34 4.9 0.1 3.0 2 1 1 3 3 3 0 Alkyl sulfatase dimerisation PAAR_motif PF05488.13 AJD70701.1 - 3.6e-26 91.1 11.8 9.3e-24 83.4 7.0 2.3 1 1 1 2 2 2 2 PAAR motif DUF4150 PF13665.6 AJD70701.1 - 0.00036 20.6 0.0 0.14 12.3 0.0 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4150) Pkinase PF00069.25 AJD70702.1 - 1.5e-35 122.9 0.0 2.5e-35 122.2 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain TPR_12 PF13424.6 AJD70702.1 - 1.4e-25 89.4 22.9 4e-09 36.6 3.4 5.9 3 2 1 5 5 5 4 Tetratricopeptide repeat Pkinase_Tyr PF07714.17 AJD70702.1 - 1.3e-23 83.6 0.0 2.4e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_10 PF13374.6 AJD70702.1 - 1.1e-16 60.1 23.5 1.8e-06 27.6 0.3 8.1 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_2 PF07719.17 AJD70702.1 - 1.9e-05 24.4 14.0 0.23 11.6 0.8 6.6 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_1 PF00515.28 AJD70702.1 - 0.00018 21.1 2.6 0.038 13.8 0.2 4.7 4 0 0 4 4 4 1 Tetratricopeptide repeat Kdo PF06293.14 AJD70702.1 - 0.00087 18.7 0.1 0.0017 17.8 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family TPR_7 PF13176.6 AJD70702.1 - 0.0025 17.7 6.5 0.13 12.3 0.2 4.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 AJD70702.1 - 0.013 15.6 0.2 0.56 10.6 0.0 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_4 PF07721.14 AJD70702.1 - 1.2 10.0 0.0 1.2 10.0 0.0 10.6 9 0 0 9 9 9 0 Tetratricopeptide repeat Sigma70_ECF PF07638.11 AJD70703.1 - 2e-30 106.1 6.2 2.3e-30 105.9 6.2 1.0 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4_2 PF08281.12 AJD70703.1 - 5.3e-07 29.2 0.0 1.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD70703.1 - 0.0023 17.6 3.9 0.0031 17.2 2.5 2.0 2 1 1 3 3 3 1 Sigma-70 region 2 HTH_23 PF13384.6 AJD70703.1 - 0.011 15.5 3.2 0.019 14.8 0.0 2.7 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 AJD70704.1 - 2.2e-16 59.3 0.2 3.7e-16 58.5 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AJD70704.1 - 1.6e-11 43.8 0.2 1.6e-11 43.8 0.2 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AJD70704.1 - 2.7e-10 39.6 0.0 4.5e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AJD70704.1 - 4.9e-07 29.4 0.1 2e-06 27.4 0.1 2.0 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 AJD70704.1 - 1.1e-05 25.4 1.6 1.3e-05 25.1 1.6 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_11 PF08279.12 AJD70704.1 - 0.0084 16.0 0.1 0.031 14.2 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 AJD70704.1 - 0.014 15.5 0.1 0.037 14.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1492 PF07374.11 AJD70704.1 - 0.018 15.2 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) PCI PF01399.27 AJD70704.1 - 0.021 15.3 0.0 0.11 13.0 0.0 2.0 2 0 0 2 2 2 0 PCI domain GerE PF00196.19 AJD70704.1 - 0.033 13.7 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 AJD70704.1 - 0.034 13.7 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 AJD70704.1 - 0.11 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FecR PF04773.13 AJD70705.1 - 1.6e-15 57.5 0.1 3e-15 56.6 0.1 1.5 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AJD70705.1 - 1.2e-07 31.4 6.9 1.2e-07 31.4 6.9 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) DUF4974 PF16344.5 AJD70705.1 - 0.011 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) DoxX_2 PF13564.6 AJD70705.1 - 0.066 13.3 1.0 2 8.6 0.0 2.5 2 0 0 2 2 2 0 DoxX-like family GrpB PF04229.14 AJD70705.1 - 0.089 13.0 0.4 0.21 11.8 0.1 1.7 2 0 0 2 2 2 0 GrpB protein TonB_dep_Rec PF00593.24 AJD70706.1 - 9.9e-41 141.1 33.0 9.9e-41 141.1 33.0 2.2 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70706.1 - 2.1e-15 57.2 2.9 6.1e-15 55.7 1.0 2.6 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70706.1 - 1.7e-14 53.6 3.7 2e-13 50.1 1.9 2.7 3 0 0 3 3 3 1 Outer membrane protein beta-barrel family STN PF07660.14 AJD70706.1 - 1.1e-08 34.7 1.0 0.00012 21.8 0.0 3.6 3 0 0 3 3 3 2 Secretin and TonB N terminus short domain T3SS_ExsE PF18286.1 AJD70706.1 - 0.12 12.3 0.8 0.42 10.6 0.8 1.9 1 0 0 1 1 1 0 Type III secretion system ExsE His_Phos_2 PF00328.22 AJD70707.1 - 2.8e-15 56.6 0.1 1.2e-06 28.2 0.6 3.0 2 1 0 2 2 2 2 Histidine phosphatase superfamily (branch 2) Jacalin PF01419.17 AJD70708.1 - 3.5e-08 33.5 0.0 5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Jacalin-like lectin domain Beta-prism_lec PF16458.5 AJD70708.1 - 0.0031 17.5 0.2 0.0065 16.4 0.2 1.5 1 0 0 1 1 1 1 Beta-prism lectin Mur_ligase_C PF02875.21 AJD70708.1 - 0.0093 16.2 0.0 0.023 15.0 0.0 1.6 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain DUF3395 PF11875.8 AJD70710.1 - 3.3e-06 27.1 0.0 1.1 9.1 0.0 3.8 4 0 0 4 4 4 3 Domain of unknown function (DUF3395) Fascin PF06268.13 AJD70710.1 - 3e-05 24.2 0.0 0.00096 19.3 0.0 2.7 2 1 1 3 3 3 2 Fascin domain DUF11 PF01345.18 AJD70710.1 - 7.3 7.0 15.5 6.2 7.2 0.1 4.4 5 1 0 5 5 5 0 Domain of unknown function DUF11 DDE_Tnp_1 PF01609.21 AJD70712.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain DUF5636 PF18686.1 AJD70713.1 - 3.4e-16 60.0 0.0 3.3e-15 56.8 0.0 2.0 1 1 0 1 1 1 1 Family of unknown function (DUF5636) AAA_2 PF07724.14 AJD70714.1 - 2.1e-40 138.6 0.0 7.8e-40 136.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 AJD70714.1 - 3.3e-29 100.9 1.1 7.3e-29 99.8 1.1 1.6 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 AJD70714.1 - 6.7e-18 65.4 0.0 2.8e-08 34.3 0.0 3.4 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 AJD70714.1 - 4.8e-12 45.8 0.0 2e-11 43.8 0.0 2.1 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 AJD70714.1 - 5.9e-12 45.8 0.0 1.7e-07 31.3 0.0 3.2 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AJD70714.1 - 2.3e-10 41.1 5.1 3.7e-06 27.4 0.0 5.1 3 1 1 5 5 5 2 AAA ATPase domain Sigma54_activat PF00158.26 AJD70714.1 - 2.8e-07 30.4 0.0 0.00011 22.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain TniB PF05621.11 AJD70714.1 - 1.9e-05 24.1 0.0 0.033 13.6 0.0 3.7 3 1 0 3 3 3 1 Bacterial TniB protein AAA_22 PF13401.6 AJD70714.1 - 2e-05 24.9 1.0 0.41 10.9 0.0 4.4 3 1 1 4 4 4 2 AAA domain AAA_7 PF12775.7 AJD70714.1 - 2e-05 24.2 0.0 0.26 10.8 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 AJD70714.1 - 7.7e-05 22.1 0.4 0.0073 15.6 0.0 3.0 3 0 0 3 3 3 1 Zeta toxin NACHT PF05729.12 AJD70714.1 - 0.00022 21.2 0.0 0.026 14.4 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 AJD70714.1 - 0.0012 18.9 0.0 0.92 9.5 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.6 AJD70714.1 - 0.0013 18.3 3.8 0.25 10.9 0.1 3.0 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 AJD70714.1 - 0.0035 17.1 0.0 2.9 7.6 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 AJD70714.1 - 0.0042 17.6 1.1 0.15 12.6 0.1 3.1 3 0 0 3 3 2 1 AAA domain ATPase_2 PF01637.18 AJD70714.1 - 0.0042 17.0 0.0 0.84 9.5 0.0 3.2 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea CbiA PF01656.23 AJD70714.1 - 0.0077 16.3 0.6 0.56 10.3 0.3 2.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Cyclin_N PF00134.23 AJD70714.1 - 0.0077 16.0 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 Cyclin, N-terminal domain TsaE PF02367.17 AJD70714.1 - 0.0096 15.9 0.0 2.1 8.4 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 AJD70714.1 - 0.015 14.5 0.1 0.95 8.6 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF815) Clp_N PF02861.20 AJD70714.1 - 0.016 15.3 0.0 0.076 13.1 0.0 2.3 1 0 0 1 1 1 0 Clp amino terminal domain, pathogenicity island component ResIII PF04851.15 AJD70714.1 - 0.018 15.0 0.0 3.1 7.8 0.0 2.9 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit Hpr_kinase_C PF07475.12 AJD70714.1 - 0.025 14.1 0.3 0.12 11.9 0.1 2.1 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain SRP54 PF00448.22 AJD70714.1 - 0.034 13.8 0.2 2.2 7.8 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 AJD70714.1 - 0.036 14.0 0.0 5.8 6.8 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase RNA_helicase PF00910.22 AJD70714.1 - 0.05 14.0 0.0 15 6.0 0.0 2.9 3 0 0 3 3 2 0 RNA helicase AAA_24 PF13479.6 AJD70714.1 - 0.071 12.8 0.0 4.8 6.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 AJD70714.1 - 0.076 12.2 0.1 3 7.0 0.0 2.7 3 0 0 3 3 3 0 TIP49 P-loop domain AAA_29 PF13555.6 AJD70714.1 - 0.08 12.7 0.0 14 5.5 0.1 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Roc PF08477.13 AJD70714.1 - 0.085 13.1 0.0 4.2 7.6 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase RuvB_N PF05496.12 AJD70714.1 - 0.1 12.3 1.2 3.2 7.5 0.0 3.5 3 1 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 AJD70714.1 - 0.15 12.4 1.8 10 6.4 0.3 3.4 3 1 0 3 3 2 0 AAA domain AAA_30 PF13604.6 AJD70714.1 - 0.95 9.2 7.6 0.69 9.6 1.2 3.2 2 2 0 2 2 2 0 AAA domain T6SS_TssG PF06996.11 AJD70715.1 - 3.1e-97 325.4 8.2 3.6e-97 325.2 8.2 1.0 1 0 0 1 1 1 1 Type VI secretion, TssG T6SS_TssF PF05947.12 AJD70716.1 - 2.4e-231 769.5 0.0 2.7e-231 769.3 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssF GPW_gp25 PF04965.14 AJD70717.1 - 5.4e-22 77.4 0.1 7.5e-22 76.9 0.1 1.2 1 0 0 1 1 1 1 Gene 25-like lysozyme ImpE PF07024.13 AJD70718.1 - 8.5e-39 132.4 0.3 1.4e-38 131.7 0.3 1.4 1 0 0 1 1 1 1 ImpE protein TPR_14 PF13428.6 AJD70718.1 - 0.0041 17.8 16.4 0.031 15.1 1.6 3.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 AJD70718.1 - 0.0043 17.7 5.7 0.0043 17.7 5.7 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat CBP_GIL PF10995.8 AJD70718.1 - 0.01 14.5 1.9 0.013 14.2 1.9 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis GIL TPR_19 PF14559.6 AJD70718.1 - 0.027 15.0 4.2 0.027 15.0 4.2 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_20 PF14561.6 AJD70718.1 - 0.031 14.6 7.6 0.031 14.6 2.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat T6SS_HCP PF05638.12 AJD70719.1 - 1.3e-26 93.5 0.0 1.6e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Type VI secretion system effector, Hcp Laminin_G_2 PF02210.24 AJD70719.1 - 0.1 13.1 0.2 0.25 11.9 0.0 1.7 2 0 0 2 2 2 0 Laminin G domain VipB PF05943.12 AJD70720.1 - 1.7e-189 630.0 0.0 1.9e-189 629.8 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion protein, EvpB/VC_A0108, tail sheath TssC PF17541.2 AJD70720.1 - 0.00019 20.4 0.5 0.028 13.2 0.4 2.2 2 0 0 2 2 2 2 Type VI secretion system, TssC, VipB BMFP PF04380.13 AJD70720.1 - 0.0018 18.7 0.6 0.013 15.9 0.6 2.3 1 1 1 2 2 2 1 Membrane fusogenic activity 7TMR-HDED PF07697.11 AJD70720.1 - 0.036 14.2 0.2 0.073 13.2 0.1 1.5 2 0 0 2 2 2 0 7TM-HD extracellular CCD48 PF15799.5 AJD70720.1 - 0.11 10.8 0.8 0.17 10.2 0.8 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 48 DUF1877 PF08974.10 AJD70720.1 - 0.13 12.3 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1877) T6SS_VipA PF05591.12 AJD70721.1 - 3.7e-56 189.2 0.0 4.2e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion system, VipA, VC_A0107 or Hcp2 HTH_18 PF12833.7 AJD70722.1 - 7.8e-15 54.9 2.5 1.4e-14 54.1 2.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AJD70722.1 - 6.1e-06 26.2 5.4 1.2e-05 25.2 0.1 2.7 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_IclR PF09339.10 AJD70722.1 - 0.11 12.4 1.4 6.8 6.6 0.1 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain Usp PF00582.26 AJD70723.1 - 3.3e-33 115.2 0.2 3.7e-33 115.0 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Hexapep PF00132.24 AJD70724.1 - 6e-12 44.8 14.7 1.8e-09 37.0 5.5 3.8 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Mac PF12464.8 AJD70724.1 - 1.6e-11 44.2 0.1 2.4e-11 43.7 0.1 1.2 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep_2 PF14602.6 AJD70724.1 - 6.1e-09 35.5 13.9 3.1e-08 33.2 5.2 3.7 2 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase HDPD PF02924.14 AJD70724.1 - 1.2 9.2 6.0 0.78 9.9 0.6 2.6 3 0 0 3 3 3 0 Bacteriophage lambda head decoration protein D UvrD_C PF13361.6 AJD70725.1 - 1.7e-73 248.0 0.0 3.8e-73 246.9 0.0 1.6 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.21 AJD70725.1 - 1.9e-68 231.4 0.0 6.2e-68 229.6 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 AJD70725.1 - 6.7e-32 110.8 0.0 1.3e-31 109.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 AJD70725.1 - 2.8e-11 43.1 0.0 1.4e-10 40.8 0.0 2.2 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AJD70725.1 - 2.2e-06 27.5 0.3 0.011 15.5 0.0 2.8 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 AJD70725.1 - 2.2e-05 24.3 0.0 0.0034 17.2 0.0 3.0 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase Exonuc_V_gamma PF04257.14 AJD70725.1 - 0.0024 16.2 0.1 0.0075 14.5 0.0 1.8 2 1 1 3 3 3 1 Exodeoxyribonuclease V, gamma subunit AAA_22 PF13401.6 AJD70725.1 - 0.0053 17.0 0.0 2.3 8.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.6 AJD70725.1 - 0.034 13.8 0.0 0.92 9.1 0.0 2.6 2 1 1 3 3 3 0 AAA domain NAD_binding_9 PF13454.6 AJD70726.1 - 1.7e-35 122.3 1.4 3.1e-34 118.2 0.4 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.6 AJD70726.1 - 5.5e-08 32.3 0.0 3.6e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 AJD70726.1 - 4.2e-07 29.5 0.3 2.4e-06 27.0 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AJD70726.1 - 5.4e-06 26.5 1.4 2.6e-05 24.4 0.0 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AJD70726.1 - 5.4e-05 22.9 12.8 0.0078 15.8 12.8 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 AJD70726.1 - 0.00012 21.3 8.3 0.051 12.6 2.6 3.1 2 1 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 AJD70726.1 - 0.00088 18.1 0.9 0.7 8.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 AJD70726.1 - 0.002 17.4 0.0 1.2 8.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 AJD70726.1 - 0.023 13.6 1.7 0.026 13.4 0.8 1.5 2 0 0 2 2 2 0 Tryptophan halogenase ApbA PF02558.16 AJD70726.1 - 0.023 14.3 0.2 0.2 11.3 0.1 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 AJD70726.1 - 0.043 13.1 0.1 0.095 11.9 0.1 1.6 1 0 0 1 1 1 0 Thi4 family DUF126 PF01989.16 AJD70726.1 - 0.079 12.8 0.3 0.17 11.7 0.3 1.5 1 0 0 1 1 1 0 Aconitase X swivel domain PLDc_2 PF13091.6 AJD70727.1 - 1.5e-43 147.9 0.0 6.9e-22 77.8 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AJD70727.1 - 3.8e-10 39.5 0.1 1.4e-05 25.1 0.0 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.6 AJD70727.1 - 6.5e-05 22.8 4.3 0.00017 21.4 4.3 1.8 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal HTH_1 PF00126.27 AJD70728.1 - 8.2e-33 112.2 3.6 6e-19 67.8 0.6 2.9 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AJD70728.1 - 2e-32 112.3 8.6 2e-32 112.3 8.6 2.0 2 1 1 3 3 3 1 LysR substrate binding domain HTH_28 PF13518.6 AJD70728.1 - 0.045 13.9 0.7 16 5.7 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain MarR_2 PF12802.7 AJD70728.1 - 0.37 10.7 7.6 0.36 10.7 0.4 3.7 2 1 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.6 AJD70728.1 - 7.5 6.5 8.2 20 5.1 0.1 3.8 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain RraA-like PF03737.15 AJD70729.1 - 9.3e-40 136.2 1.9 1.2e-39 135.8 1.9 1.1 1 0 0 1 1 1 1 Aldolase/RraA PrpF PF04303.13 AJD70730.1 - 2e-110 369.3 0.8 2.3e-110 369.1 0.8 1.0 1 0 0 1 1 1 1 PrpF protein Pro_racemase PF05544.11 AJD70730.1 - 0.019 14.0 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 Proline racemase Amidohydro_2 PF04909.14 AJD70731.1 - 3.8e-61 207.4 3.5 4.4e-61 207.2 3.5 1.0 1 0 0 1 1 1 1 Amidohydrolase Ribosomal_L33 PF00471.20 AJD70732.1 - 1.4e-17 63.9 0.1 1.5e-17 63.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L33 Ribosomal_L28 PF00830.19 AJD70733.1 - 3.5e-27 94.4 3.5 4.2e-27 94.1 3.5 1.1 1 0 0 1 1 1 1 Ribosomal L28 family ACR_tran PF00873.19 AJD70734.1 - 0 1074.0 1.4 0 1073.8 1.4 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family HlyD_D23 PF16576.5 AJD70735.1 - 1.1e-24 86.9 0.1 4.2e-17 62.1 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AJD70735.1 - 4.2e-14 53.1 0.5 7.1e-10 39.5 0.1 2.9 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AJD70735.1 - 8.3e-08 31.9 0.8 0.00013 21.7 0.0 3.4 2 1 1 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AJD70735.1 - 7.7e-05 22.4 0.0 0.00039 20.2 0.0 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 AJD70735.1 - 0.00046 20.1 0.2 0.0015 18.4 0.0 1.9 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain PP2C_2 PF13672.6 AJD70735.1 - 0.0025 17.5 0.6 0.0074 15.9 0.1 1.9 2 0 0 2 2 2 1 Protein phosphatase 2C Peptidase_M23 PF01551.22 AJD70735.1 - 0.0054 16.9 1.2 0.044 14.0 0.2 2.6 1 1 1 2 2 2 1 Peptidase family M23 GCV_H PF01597.19 AJD70735.1 - 0.04 13.8 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein OEP PF02321.18 AJD70736.1 - 1.1e-24 87.4 42.7 5.7e-15 55.6 15.3 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein DUF2946 PF11162.8 AJD70737.1 - 0.0024 18.5 6.2 0.0031 18.1 6.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2946) MtrE PF04206.12 AJD70737.1 - 0.17 11.2 0.0 0.21 10.9 0.0 1.0 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit E DUF885 PF05960.11 AJD70738.1 - 1.7e-153 513.1 3.9 2.1e-153 512.8 3.9 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) Tom5 PF10642.9 AJD70738.1 - 0.17 11.9 2.3 0.64 10.1 2.3 2.0 1 0 0 1 1 1 0 Mitochondrial import receptor subunit or translocase GidB PF02527.15 AJD70739.1 - 1.3e-51 174.6 0.0 1.6e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 AJD70739.1 - 1.2e-05 24.9 0.0 4e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 AJD70739.1 - 0.0026 17.6 0.0 0.0039 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD70739.1 - 0.025 15.3 0.0 0.041 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 AJD70739.1 - 0.064 12.9 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PhoD PF09423.10 AJD70740.1 - 2.2e-104 349.3 2.3 2.6e-104 349.0 2.3 1.1 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 AJD70740.1 - 1.4e-27 96.0 0.0 2.5e-27 95.2 0.0 1.4 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Metallophos PF00149.28 AJD70740.1 - 0.094 13.2 0.1 0.33 11.4 0.1 2.0 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AJD70740.1 - 0.13 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain PhoD PF09423.10 AJD70742.1 - 6.6e-80 268.7 0.0 7.8e-80 268.5 0.0 1.1 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 AJD70742.1 - 3e-19 69.3 0.0 6.4e-19 68.3 0.0 1.6 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain ACPS PF01648.20 AJD70743.1 - 2.9e-19 69.3 0.0 1.6e-18 66.9 0.0 1.9 2 0 0 2 2 2 1 4'-phosphopantetheinyl transferase superfamily Transgly_assoc PF04226.13 AJD70744.1 - 6.2e-12 45.6 15.5 6.2e-12 45.6 15.5 2.2 2 0 0 2 2 2 1 Transglycosylase associated protein ABC2_membrane PF01061.24 AJD70744.1 - 0.031 13.7 6.0 0.016 14.6 4.3 1.4 1 1 0 1 1 1 0 ABC-2 type transporter DUF4064 PF13273.6 AJD70744.1 - 0.036 14.4 5.7 0.036 14.4 5.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF5518 PF17647.1 AJD70744.1 - 0.045 13.9 17.0 0.052 13.7 17.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5518) NiFe_hyd_3_EhaA PF17367.2 AJD70744.1 - 1.2 9.3 7.2 0.15 12.2 1.7 2.1 1 1 1 2 2 2 0 NiFe-hydrogenase-type-3 Eha complex subunit A PrgI PF12666.7 AJD70744.1 - 3.4 8.4 7.9 1.5 9.6 4.2 1.9 1 1 1 2 2 2 0 PrgI family protein Vma12 PF11712.8 AJD70744.1 - 6.1 6.9 5.2 6.6 6.8 5.2 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase GFA PF04828.14 AJD70745.1 - 8.9e-09 35.6 0.4 8.9e-09 35.6 0.4 1.5 2 0 0 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Exo_endo_phos PF03372.23 AJD70746.1 - 5.3e-25 88.3 4.2 6.6e-25 88.0 4.2 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 AJD70746.1 - 0.00077 19.3 0.1 0.0032 17.3 0.1 1.9 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase ROK PF00480.20 AJD70748.1 - 2.1e-22 80.0 0.1 3.6e-18 66.1 0.0 2.2 2 0 0 2 2 2 2 ROK family MarR_2 PF12802.7 AJD70748.1 - 0.00058 19.7 1.1 0.00058 19.7 1.1 2.9 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.6 AJD70748.1 - 0.062 13.3 0.7 0.36 10.8 0.4 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 AJD70748.1 - 2.3 8.1 7.5 0.15 11.9 0.6 2.5 3 0 0 3 3 3 0 IclR helix-turn-helix domain DUF3731 PF12531.8 AJD70749.1 - 0.00013 21.9 0.6 0.00018 21.4 0.6 1.2 1 0 0 1 1 1 1 DNA-K related protein Tryp_alpha_amyl PF00234.22 AJD70749.1 - 4.5 7.8 7.3 0.2 12.1 0.8 2.0 2 1 0 2 2 2 0 Protease inhibitor/seed storage/LTP family Rotamase_3 PF13616.6 AJD70750.1 - 1.8e-16 60.7 0.0 3.4e-16 59.8 0.0 1.5 1 1 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 AJD70750.1 - 2.1e-15 57.4 0.0 2.1e-15 57.4 0.0 2.8 4 0 0 4 4 4 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 AJD70750.1 - 1.4e-09 38.9 0.0 1.4e-09 38.9 0.0 2.9 2 1 2 4 4 4 2 PPIC-type PPIASE domain STN PF07660.14 AJD70750.1 - 0.23 11.3 0.5 16 5.4 0.0 2.5 2 0 0 2 2 2 0 Secretin and TonB N terminus short domain GDPD PF03009.17 AJD70751.1 - 5e-15 55.9 0.0 9.2e-15 55.1 0.0 1.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family SSF PF00474.17 AJD70752.1 - 1.4e-106 356.8 42.2 1.8e-106 356.5 42.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2818 PF10993.8 AJD70752.1 - 0.019 15.5 0.3 0.019 15.5 0.3 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF2818) TMEM174 PF15029.6 AJD70752.1 - 1.4 8.6 4.4 2.8 7.6 4.4 1.5 1 0 0 1 1 1 0 Transmembrane protein 174 LapA_dom PF06305.11 AJD70752.1 - 2 8.3 0.0 2 8.3 0.0 7.1 8 1 1 9 9 9 0 Lipopolysaccharide assembly protein A domain DUF485 PF04341.12 AJD70753.1 - 2.3e-33 114.0 0.3 2.6e-33 113.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF485 DUF21 PF01595.20 AJD70753.1 - 0.02 14.6 0.3 0.024 14.4 0.3 1.1 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain SlyX PF04102.12 AJD70754.1 - 0.12 13.0 3.2 0.22 12.2 3.2 1.4 1 0 0 1 1 1 0 SlyX TolA_bind_tri PF16331.5 AJD70754.1 - 0.62 10.2 9.0 1.2 9.3 9.0 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation Sugarporin_N PF11471.8 AJD70754.1 - 2 8.5 9.5 19 5.3 9.5 2.2 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension AMP-binding PF00501.28 AJD70755.1 - 6.3e-92 308.4 0.0 7.6e-92 308.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AJD70755.1 - 1.2e-25 90.3 0.0 2.2e-25 89.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 AJD70755.1 - 1.5e-20 72.9 0.3 4.9e-20 71.2 0.3 2.0 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Response_reg PF00072.24 AJD70756.1 - 5.8e-22 78.0 0.0 9.1e-22 77.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AJD70756.1 - 4.6e-19 67.7 0.0 7.4e-19 67.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AJD70756.1 - 0.00044 19.9 0.1 0.00094 18.8 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 AJD70756.1 - 0.018 15.1 0.0 0.042 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 AJD70756.1 - 0.019 14.4 0.1 0.056 13.0 0.1 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 AJD70756.1 - 0.032 14.0 0.8 0.23 11.3 0.1 2.6 3 0 0 3 3 3 0 HTH DNA binding domain HTH_7 PF02796.15 AJD70756.1 - 0.033 14.2 0.1 0.086 12.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF2089 PF09862.9 AJD70756.1 - 0.062 13.3 0.0 0.093 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_29 PF13551.6 AJD70756.1 - 0.081 13.0 0.0 0.39 10.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix OKR_DC_1_N PF03709.15 AJD70756.1 - 0.1 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF4424 PF14415.6 AJD70757.1 - 1.3e-83 280.8 0.0 1.5e-83 280.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4424) Redoxin PF08534.10 AJD70759.1 - 5e-06 26.3 0.0 1e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AJD70759.1 - 7e-06 26.0 0.0 9.6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 AJD70759.1 - 0.012 15.9 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_3 PF13192.6 AJD70759.1 - 0.027 14.5 0.0 3.2 7.9 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin domain TraF PF13728.6 AJD70759.1 - 0.032 14.1 0.0 0.049 13.4 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 AJD70759.1 - 0.042 14.3 0.0 0.084 13.3 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin PF00085.20 AJD70759.1 - 0.077 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin DUF4079 PF13301.6 AJD70759.1 - 0.094 12.9 0.1 0.12 12.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) Thioredoxin_4 PF13462.6 AJD70759.1 - 0.12 12.5 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Glyco_hydro_43 PF04616.14 AJD70761.1 - 1.2e-87 293.9 3.8 1.5e-87 293.6 3.8 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 AJD70761.1 - 9.6e-10 38.5 0.0 1.5e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain Aldo_ket_red PF00248.21 AJD70762.1 - 1.8e-44 152.1 0.0 2.2e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HEAT_PBS PF03130.16 AJD70762.1 - 0.14 12.9 0.0 0.14 12.9 0.0 3.6 3 1 0 3 3 3 0 PBS lyase HEAT-like repeat Amidohydro_2 PF04909.14 AJD70763.1 - 3.5e-37 128.8 16.8 3.9e-37 128.6 16.8 1.0 1 0 0 1 1 1 1 Amidohydrolase adh_short_C2 PF13561.6 AJD70764.1 - 1.8e-62 211.0 1.4 2.3e-62 210.6 1.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AJD70764.1 - 3.6e-44 150.6 0.7 4.2e-44 150.4 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AJD70764.1 - 8.6e-05 22.5 0.7 0.00014 21.8 0.7 1.3 1 0 0 1 1 1 1 KR domain AdoHcyase_NAD PF00670.21 AJD70764.1 - 0.0025 17.9 0.9 0.0041 17.2 0.2 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Methyltransf_25 PF13649.6 AJD70764.1 - 0.0038 17.9 0.2 0.0061 17.2 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Sacchrp_dh_NADP PF03435.18 AJD70764.1 - 0.0091 16.3 0.2 0.018 15.3 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ADH_zinc_N PF00107.26 AJD70764.1 - 0.013 15.5 1.6 0.018 15.0 0.9 1.6 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Epimerase PF01370.21 AJD70764.1 - 0.029 13.8 0.4 0.083 12.3 0.4 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 AJD70764.1 - 0.038 13.9 0.8 0.057 13.3 0.8 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_12 PF08242.12 AJD70764.1 - 0.055 14.2 0.1 0.092 13.5 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 AJD70764.1 - 0.13 11.8 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAA_hydrolase PF01557.18 AJD70765.1 - 4.1e-74 248.9 0.0 4.9e-74 248.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family MR_MLE_C PF13378.6 AJD70766.1 - 3.6e-61 206.5 3.9 7.2e-61 205.5 3.9 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AJD70766.1 - 7.2e-07 29.4 1.0 1.3e-06 28.6 0.3 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ImpA_N PF06812.12 AJD70766.1 - 0.069 13.3 0.2 0.19 11.8 0.1 1.7 2 0 0 2 2 2 0 ImpA, N-terminal, type VI secretion system rhaM PF05336.13 AJD70768.1 - 1.2e-25 89.7 0.1 1.3e-25 89.5 0.1 1.0 1 0 0 1 1 1 1 L-rhamnose mutarotase TCR_zetazeta PF11628.8 AJD70768.1 - 0.1 12.3 0.3 0.18 11.5 0.3 1.3 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain MFS_1 PF07690.16 AJD70769.1 - 8.9e-22 77.5 38.7 8.9e-22 77.5 38.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 AJD70769.1 - 1.2e-06 27.1 18.7 0.0002 19.8 2.4 3.1 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family HTH_IclR PF09339.10 AJD70770.1 - 2.7e-15 55.9 0.1 5.9e-15 54.8 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain IclR PF01614.18 AJD70770.1 - 6.2e-08 32.5 0.0 1.1e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_24 PF13412.6 AJD70770.1 - 7.3e-05 22.2 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AJD70770.1 - 0.00034 20.4 0.0 0.0013 18.5 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AJD70770.1 - 0.00049 20.1 0.0 0.0014 18.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 AJD70770.1 - 0.00087 19.2 0.1 0.0019 18.1 0.1 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.19 AJD70770.1 - 0.004 17.0 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 AJD70770.1 - 0.0054 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 AJD70770.1 - 0.037 13.9 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 AJD70770.1 - 0.089 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 AJD70770.1 - 0.089 12.8 0.1 0.2 11.7 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mntp PF02659.15 AJD70771.1 - 1.7e-49 167.5 8.4 1.7e-49 167.5 8.4 2.0 2 0 0 2 2 2 1 Putative manganese efflux pump IncE PF17627.2 AJD70771.1 - 0.032 14.2 7.2 0.075 13.1 3.6 2.3 2 0 0 2 2 2 0 Inclusion membrane protein E FANC_SAP PF18081.1 AJD70771.1 - 0.047 13.9 0.0 0.072 13.3 0.0 1.4 1 0 0 1 1 1 0 Fanconi anemia-associated nuclease SAP domain Fusion_gly_K PF01621.17 AJD70771.1 - 0.098 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Cell fusion glycoprotein K Pam17 PF08566.10 AJD70771.1 - 2.1 8.2 3.5 3.3 7.5 0.9 2.1 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 PAS_7 PF12860.7 AJD70772.1 - 2.5e-43 146.9 0.0 6e-43 145.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 AJD70772.1 - 4e-18 66.0 0.0 7.3e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AJD70772.1 - 4.3e-12 45.9 2.3 1.4e-11 44.3 2.3 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 AJD70772.1 - 6.3e-11 42.4 0.0 1.3e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 AJD70772.1 - 6.2e-06 26.2 0.0 2.1e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 AJD70772.1 - 1.6e-05 24.8 0.1 8.7e-05 22.4 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 AJD70772.1 - 2.1e-05 24.7 0.4 8.5e-05 22.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 AJD70772.1 - 0.076 13.3 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 PAS domain Glyco_hydro_115 PF15979.5 AJD70773.1 - 5.7e-143 476.4 1.2 5.7e-143 476.4 1.2 1.5 2 0 0 2 2 2 1 Glycosyl hydrolase family 115 GH115_C PF17829.1 AJD70773.1 - 3.1e-39 134.6 0.0 5.8e-39 133.7 0.0 1.4 1 0 0 1 1 1 1 Gylcosyl hydrolase family 115 C-terminal domain Glyco_hydro_67N PF03648.14 AJD70773.1 - 0.021 15.1 0.0 0.084 13.2 0.0 2.0 1 1 0 1 1 1 0 Glycosyl hydrolase family 67 N-terminus ADH_zinc_N PF00107.26 AJD70773.1 - 0.11 12.4 0.1 1.9 8.5 0.1 2.7 3 0 0 3 3 3 0 Zinc-binding dehydrogenase Glyco_hydro_36 PF17167.4 AJD70774.1 - 9.9e-60 202.4 0.0 2.8e-59 200.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 AJD70774.1 - 1.5e-23 83.5 0.0 2.8e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 36 DUF2396 PF09654.10 AJD70774.1 - 0.016 15.4 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) DUF982 PF06169.12 AJD70774.1 - 0.62 10.1 3.2 32 4.6 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF982) MFS_2 PF13347.6 AJD70775.1 - 1.6e-97 326.8 32.2 1.8e-97 326.7 32.2 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 AJD70775.1 - 7.9e-15 54.6 31.3 7.9e-15 54.6 31.3 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 AJD70775.1 - 0.00043 19.2 10.0 0.014 14.3 9.9 2.3 1 1 0 1 1 1 1 MFS_1 like family AAA_33 PF13671.6 AJD70776.1 - 1.3e-13 51.4 0.0 1.9e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SKI PF01202.22 AJD70776.1 - 2e-13 50.8 0.0 2.4e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 AJD70776.1 - 2.5e-09 37.7 0.0 4.1e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AJD70776.1 - 1.4e-05 25.6 0.2 2.4e-05 24.8 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 AJD70776.1 - 0.0002 21.6 0.0 0.00031 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 AJD70776.1 - 0.00025 21.5 0.0 0.0011 19.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 AJD70776.1 - 0.00033 20.0 0.0 0.00051 19.4 0.0 1.4 1 1 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 AJD70776.1 - 0.00043 20.1 0.0 0.00063 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 AJD70776.1 - 0.001 18.9 0.1 0.002 18.0 0.0 1.4 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Cytidylate_kin2 PF13189.6 AJD70776.1 - 0.0015 18.7 0.1 0.0043 17.2 0.0 1.7 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA PF00004.29 AJD70776.1 - 0.0033 17.9 0.0 0.0055 17.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AJD70776.1 - 0.0036 17.6 0.0 0.006 16.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 AJD70776.1 - 0.004 16.9 0.1 0.0075 16.0 0.0 1.4 1 1 0 1 1 1 1 Cytidylate kinase AAA_30 PF13604.6 AJD70776.1 - 0.0043 16.8 0.8 0.074 12.8 0.2 2.2 1 1 0 2 2 2 1 AAA domain DUF1380 PF07128.12 AJD70776.1 - 0.0047 17.1 0.1 0.0081 16.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1380) APS_kinase PF01583.20 AJD70776.1 - 0.0052 16.7 0.0 0.0077 16.1 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase dNK PF01712.19 AJD70776.1 - 0.006 16.5 0.0 0.35 10.7 0.0 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase PduV-EutP PF10662.9 AJD70776.1 - 0.0064 16.2 0.1 0.064 13.0 0.0 2.0 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 AJD70776.1 - 0.0066 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain CoaE PF01121.20 AJD70776.1 - 0.014 15.1 0.8 0.021 14.5 0.0 1.6 2 0 0 2 2 2 0 Dephospho-CoA kinase NACHT PF05729.12 AJD70776.1 - 0.02 14.8 0.2 0.038 13.9 0.1 1.7 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.27 AJD70776.1 - 0.024 15.1 0.0 0.041 14.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.17 AJD70776.1 - 0.03 14.0 0.0 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase Hydin_ADK PF17213.3 AJD70776.1 - 0.039 14.2 0.1 0.076 13.3 0.1 1.5 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain Viral_helicase1 PF01443.18 AJD70776.1 - 0.047 13.4 0.0 0.06 13.1 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 AJD70776.1 - 0.048 13.7 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 AJD70776.1 - 0.048 13.4 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain ADK PF00406.22 AJD70776.1 - 0.049 13.7 0.0 0.13 12.3 0.0 1.6 2 0 0 2 2 2 0 Adenylate kinase AAA_29 PF13555.6 AJD70776.1 - 0.056 13.2 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 AJD70776.1 - 0.059 13.1 0.1 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 AJD70776.1 - 0.062 13.3 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) 6PF2K PF01591.18 AJD70776.1 - 0.072 12.4 0.0 0.099 11.9 0.0 1.1 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DUF2075 PF09848.9 AJD70776.1 - 0.074 12.3 0.0 0.089 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 AJD70776.1 - 0.15 11.5 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein NB-ARC PF00931.22 AJD70776.1 - 0.18 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain CbiA PF01656.23 AJD70776.1 - 0.19 11.8 0.2 0.33 11.0 0.0 1.7 2 0 0 2 2 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Torsin PF06309.11 AJD70776.1 - 0.2 11.7 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Torsin PQQ_2 PF13360.6 AJD70777.1 - 3.7e-38 131.4 17.5 6.4e-19 68.5 4.0 4.4 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 AJD70777.1 - 3.5e-37 124.6 21.6 7.1e-07 28.9 0.1 8.4 8 0 0 8 8 8 7 PQQ enzyme repeat PQQ_3 PF13570.6 AJD70777.1 - 2.1e-30 104.4 35.8 2.6e-08 34.1 0.1 8.7 9 0 0 9 9 9 6 PQQ-like domain DUF987 PF06174.11 AJD70777.1 - 0.091 12.7 0.1 3.5 7.6 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF987) DHquinase_II PF01220.19 AJD70779.1 - 0.00015 21.4 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Dehydroquinase class II TamB PF04357.13 AJD70781.1 - 2.7e-59 201.3 10.2 1.7e-56 192.2 3.7 5.3 5 1 0 5 5 5 2 TamB, inner membrane protein subunit of TAM complex AsmA_2 PF13502.6 AJD70781.1 - 1.3e-09 37.9 11.8 0.068 12.7 0.1 6.7 4 2 1 5 5 5 4 AsmA-like C-terminal region US30 PF17624.2 AJD70781.1 - 0.0034 16.5 0.0 0.0075 15.4 0.0 1.5 1 0 0 1 1 1 1 Family of unknown function Bac_surface_Ag PF01103.23 AJD70782.1 - 2.6e-32 112.6 4.0 2.6e-32 112.6 4.0 1.7 2 0 0 2 2 2 1 Surface antigen POTRA_TamA_1 PF17243.2 AJD70782.1 - 4.2e-17 62.0 0.4 1.1e-16 60.7 0.1 1.9 2 0 0 2 2 2 1 POTRA domain TamA domain 1 POTRA PF07244.15 AJD70782.1 - 3.6e-13 49.9 0.2 2e-05 25.0 0.0 3.6 3 0 0 3 3 3 3 Surface antigen variable number repeat ATPgrasp_YheCD PF14398.6 AJD70783.1 - 0.00011 21.6 0.1 0.34 10.1 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp GSH-S_ATP PF02955.16 AJD70783.1 - 0.00064 19.2 0.0 0.00097 18.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain RimK PF08443.11 AJD70783.1 - 0.029 14.0 0.0 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 RimK-like ATP-grasp domain TonB_C PF03544.14 AJD70784.1 - 0.17 12.3 0.0 0.5 10.8 0.0 1.8 2 0 0 2 2 2 0 Gram-negative bacterial TonB protein C-terminal HTH_Tnp_1 PF01527.20 AJD70785.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD70785.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70785.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD70785.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD70785.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD70785.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD70785.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD70785.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD70785.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD70785.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD70785.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD70785.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD70785.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD70785.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD70785.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD70785.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD70785.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD70785.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD70785.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD70785.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD70785.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD70786.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD70786.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD70786.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain ABC_tran PF00005.27 AJD70787.1 - 6.8e-32 110.9 0.0 1.1e-31 110.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AJD70787.1 - 6.4e-27 94.9 16.6 8.5e-27 94.5 16.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 AJD70787.1 - 3.6e-07 29.8 0.2 2.5e-05 23.8 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 AJD70787.1 - 0.00012 22.5 1.2 0.0023 18.4 1.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AJD70787.1 - 0.00067 20.0 0.3 0.049 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 AJD70787.1 - 0.00078 19.9 0.0 0.0021 18.5 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AJD70787.1 - 0.0013 18.6 0.0 0.38 10.5 0.0 2.7 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 AJD70787.1 - 0.0027 17.1 0.0 0.0058 16.0 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 AJD70787.1 - 0.0066 16.7 0.1 0.059 13.6 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 AJD70787.1 - 0.0079 16.2 0.1 0.027 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 AJD70787.1 - 0.025 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 AJD70787.1 - 0.027 14.2 0.3 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DEAD PF00270.29 AJD70787.1 - 0.037 13.8 0.9 0.27 11.0 0.9 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_29 PF13555.6 AJD70787.1 - 0.038 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 AJD70787.1 - 0.051 13.7 0.2 0.12 12.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 AJD70787.1 - 0.053 13.2 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 AJD70787.1 - 0.07 12.3 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 AJD70787.1 - 0.072 13.0 0.1 0.16 11.9 0.1 1.6 1 1 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 AJD70787.1 - 0.073 12.6 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 AJD70787.1 - 0.083 13.3 0.0 0.6 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA helicase RuvB_N PF05496.12 AJD70787.1 - 0.096 12.4 0.5 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 AJD70787.1 - 0.1 12.3 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain EI24 PF07264.11 AJD70787.1 - 0.14 12.4 10.6 0.24 11.6 10.6 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) AAA_18 PF13238.6 AJD70787.1 - 0.15 12.6 0.2 0.4 11.2 0.1 1.8 2 0 0 2 2 1 0 AAA domain Rad17 PF03215.15 AJD70787.1 - 0.17 11.8 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_membrane_3 PF13748.6 AJD70787.1 - 3 7.0 8.6 2.6 7.2 2.2 2.3 2 0 0 2 2 2 0 ABC transporter transmembrane region TPR_2 PF07719.17 AJD70788.1 - 0.13 12.4 2.1 0.14 12.3 2.1 1.1 1 0 0 1 1 1 0 Tetratricopeptide repeat tRNA_synt_2f PF02092.17 AJD70789.1 - 6.7e-190 632.5 0.0 8.1e-190 632.3 0.0 1.1 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.15 AJD70789.1 - 6.8e-07 29.5 0.0 1.6e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain SelB-wing_2 PF09106.11 AJD70789.1 - 0.0073 16.5 0.2 0.041 14.1 0.2 2.3 2 0 0 2 2 2 1 Elongation factor SelB, winged helix AMMECR1 PF01871.17 AJD70789.1 - 0.12 12.0 0.0 1.4 8.5 0.0 2.4 2 1 0 2 2 2 0 AMMECR1 tRNA-synt_2e PF02091.15 AJD70790.1 - 1.1e-146 487.4 0.0 1.2e-146 487.2 0.0 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit T2SSE PF00437.20 AJD70791.1 - 1.9e-76 256.7 0.1 2.8e-76 256.2 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSE_N PF05157.15 AJD70791.1 - 3.9e-15 56.0 0.3 9.1e-15 54.9 0.3 1.6 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_16 PF13191.6 AJD70791.1 - 0.00046 20.6 0.0 0.0013 19.2 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 AJD70791.1 - 0.002 18.1 0.3 0.095 12.6 0.1 2.4 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.6 AJD70791.1 - 0.0027 17.7 0.0 0.0049 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AJD70791.1 - 0.0045 17.3 0.0 0.0094 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 AJD70791.1 - 0.0065 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 AJD70791.1 - 0.0076 16.0 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 AJD70791.1 - 0.01 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 AJD70791.1 - 0.012 16.2 0.1 0.019 15.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 AJD70791.1 - 0.012 15.9 0.7 0.034 14.5 0.7 1.9 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 AJD70791.1 - 0.016 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AJD70791.1 - 0.024 15.2 0.1 0.08 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 AJD70791.1 - 0.026 14.1 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 AJD70791.1 - 0.03 14.1 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AJD70791.1 - 0.065 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 AJD70791.1 - 0.065 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 AJD70791.1 - 0.12 11.7 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATPase_2 PF01637.18 AJD70791.1 - 0.15 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ResIII PF04851.15 AJD70791.1 - 0.18 11.8 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit FOXP-CC PF16159.5 AJD70792.1 - 3.1e-07 30.9 14.1 3.8 8.2 0.1 11.9 14 0 0 14 14 14 3 FOXP coiled-coil domain CDPS PF16715.5 AJD70792.1 - 0.0082 15.8 9.3 2.5 7.7 0.1 5.6 5 1 1 6 6 6 2 Cyclodipeptide synthase Glyco_transf_21 PF13506.6 AJD70792.1 - 0.34 10.4 4.7 11 5.4 0.1 3.8 4 0 0 4 4 4 0 Glycosyl transferase family 21 GATase PF00117.28 AJD70793.1 - 1.3e-20 74.0 0.0 1.8e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AJD70793.1 - 4e-11 43.1 0.3 9.3e-11 41.9 0.3 1.6 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 AJD70793.1 - 2.6e-05 23.9 0.0 4.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 AJD70793.1 - 0.058 13.2 0.0 0.12 12.2 0.0 1.5 2 0 0 2 2 2 0 DJ-1/PfpI family UPF0154 PF03672.13 AJD70794.1 - 1.4 9.0 4.4 14 5.8 0.9 2.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) TatC PF00902.18 AJD70795.1 - 6.1e-64 215.7 21.0 7e-64 215.5 21.0 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.16 AJD70796.1 - 1.2e-05 24.5 4.8 3.9e-05 22.9 4.8 1.9 1 1 0 1 1 1 1 mttA/Hcf106 family ApoLp-III PF07464.11 AJD70796.1 - 0.0081 16.3 0.4 0.012 15.7 0.4 1.2 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) YjbH PF06082.11 AJD70796.1 - 0.013 14.3 0.4 0.015 14.2 0.4 1.0 1 0 0 1 1 1 0 Exopolysaccharide biosynthesis protein YbjH Rx_N PF18052.1 AJD70796.1 - 0.15 12.3 4.1 0.23 11.8 4.1 1.2 1 0 0 1 1 1 0 Rx N-terminal domain TcpS PF17456.2 AJD70796.1 - 0.19 11.8 0.1 0.27 11.3 0.1 1.2 1 0 0 1 1 1 0 Toxin-coregulated pilus protein S Kre28 PF17097.5 AJD70796.1 - 0.24 10.3 3.6 0.31 10.0 3.6 1.1 1 0 0 1 1 1 0 Spindle pole body component MttA_Hcf106 PF02416.16 AJD70797.1 - 8.6e-15 53.8 0.1 1.1e-14 53.5 0.1 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family Ni_hydr_CYTB PF01292.20 AJD70797.1 - 0.034 13.8 0.2 0.039 13.6 0.2 1.1 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Conotoxin PF02950.17 AJD70797.1 - 0.094 13.7 0.1 0.47 11.5 0.0 1.7 1 1 1 2 2 2 0 Conotoxin Ysc84 PF04366.12 AJD70798.1 - 7.9e-29 100.0 0.3 2.3e-28 98.5 0.3 1.8 2 0 0 2 2 2 1 Las17-binding protein actin regulator DUF1134 PF06577.12 AJD70798.1 - 0.0069 16.2 0.1 0.01 15.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1134) Ferrochelatase PF00762.19 AJD70799.1 - 3.3e-100 335.3 0.0 3.6e-100 335.1 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 AJD70799.1 - 0.00034 20.9 0.0 0.0012 19.1 0.0 1.9 2 0 0 2 2 2 1 CbiX P3A PF08727.11 AJD70799.1 - 0.059 12.8 0.2 0.1 12.0 0.2 1.4 1 0 0 1 1 1 0 Poliovirus 3A protein like Abhydrolase_1 PF00561.20 AJD70800.1 - 2.7e-20 73.1 0.0 3.5e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AJD70800.1 - 6.1e-18 66.2 14.1 7.1e-18 66.0 14.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AJD70800.1 - 1.3e-12 47.5 0.0 2e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 AJD70800.1 - 3.9e-05 23.9 0.8 7.7e-05 22.9 0.8 1.7 1 1 0 1 1 1 1 Thioesterase domain Ndr PF03096.14 AJD70800.1 - 0.00014 20.7 0.0 0.00056 18.7 0.0 1.8 2 0 0 2 2 2 1 Ndr family Abhydrolase_3 PF07859.13 AJD70800.1 - 0.00088 19.2 0.4 0.0014 18.5 0.3 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Lipase_3 PF01764.25 AJD70800.1 - 0.0024 17.7 0.2 0.0038 17.1 0.2 1.4 1 0 0 1 1 1 1 Lipase (class 3) PGAP1 PF07819.13 AJD70800.1 - 0.022 14.5 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Abhydrolase_5 PF12695.7 AJD70800.1 - 0.031 14.0 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family DUF2048 PF09752.9 AJD70800.1 - 0.037 13.1 0.3 0.095 11.8 0.1 1.6 2 0 0 2 2 2 0 Abhydrolase domain containing 18 Esterase PF00756.20 AJD70800.1 - 0.15 11.7 0.3 0.23 11.1 0.3 1.5 1 1 0 1 1 1 0 Putative esterase BAAT_C PF08840.11 AJD70800.1 - 0.23 11.4 0.0 0.53 10.2 0.0 1.6 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF45 PF01863.17 AJD70801.1 - 1.5e-46 159.1 0.0 1.8e-46 158.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 AJD70801.1 - 0.0012 19.0 0.3 0.0019 18.3 0.3 1.3 1 0 0 1 1 1 1 WLM domain RdgC PF04381.12 AJD70802.1 - 4.1e-98 328.3 0.0 4.6e-98 328.2 0.0 1.0 1 0 0 1 1 1 1 Putative exonuclease, RdgC ATP_bind_3 PF01171.20 AJD70803.1 - 2e-16 60.3 0.0 3.4e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 AJD70803.1 - 0.0013 18.8 0.0 0.58 10.2 0.0 2.2 2 0 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family AP_endonuc_2 PF01261.24 AJD70804.1 - 0.00056 19.4 0.1 0.0025 17.3 0.1 1.8 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Peripla_BP_3 PF13377.6 AJD70805.1 - 2.3e-39 135.4 3.7 8.9e-38 130.2 2.9 2.2 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD70805.1 - 5.9e-28 98.1 0.1 7.8e-28 97.7 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD70805.1 - 1.8e-19 69.3 1.0 4.3e-19 68.0 1.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD70805.1 - 1.1e-16 61.2 0.0 1.7e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_31 PF13560.6 AJD70805.1 - 0.0067 16.7 1.8 0.013 15.9 0.4 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 AJD70805.1 - 0.016 15.3 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix FAM131 PF15010.6 AJD70805.1 - 0.027 14.4 0.2 0.061 13.2 0.2 1.6 1 0 0 1 1 1 0 Putative cell signalling HTH_Tnp_ISL3 PF13542.6 AJD70805.1 - 0.85 9.1 8.4 0.78 9.2 0.7 3.5 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Glyco_hydro_67M PF07488.12 AJD70806.1 - 5.4e-151 502.2 0.0 7.1e-151 501.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 middle domain Glyco_hydro_67C PF07477.12 AJD70806.1 - 2.8e-96 321.3 0.5 5.6e-96 320.4 0.3 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 67 C-terminus Glyco_hydro_67N PF03648.14 AJD70806.1 - 2.5e-25 89.1 0.0 3.6e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Glyco_hydro_20b PF02838.15 AJD70806.1 - 0.0051 17.6 0.1 0.01 16.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 DUF4838 PF16126.5 AJD70806.1 - 0.058 12.8 0.0 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4838) SASA PF03629.18 AJD70807.1 - 5.1e-22 78.6 0.0 6.1e-13 48.9 0.0 2.2 2 0 0 2 2 2 2 Carbohydrate esterase, sialic acid-specific acetylesterase Glyco_hydro_2_N PF02837.18 AJD70807.1 - 2.1e-07 31.0 0.0 6.2e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain CarboxypepD_reg PF13620.6 AJD70807.1 - 0.0057 16.9 0.0 0.014 15.7 0.0 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain BetaGal_dom4_5 PF13364.6 AJD70807.1 - 0.034 14.7 0.1 0.18 12.4 0.0 2.2 2 0 0 2 2 2 0 Beta-galactosidase jelly roll domain Big_6 PF17936.1 AJD70807.1 - 0.059 13.6 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial Ig domain MR_MLE_C PF13378.6 AJD70808.1 - 9.1e-39 133.3 0.6 1.3e-38 132.7 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AJD70808.1 - 6.7e-32 110.1 0.1 2.5e-31 108.3 0.0 1.9 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Glyco_hydro_43 PF04616.14 AJD70809.1 - 8.6e-97 323.9 0.1 1.2e-96 323.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 AJD70809.1 - 3.3e-41 141.2 0.1 7.5e-40 136.8 0.0 2.2 2 0 0 2 2 2 1 Beta xylosidase C-terminal Concanavalin A-like domain DUF3148 PF11347.8 AJD70809.1 - 0.014 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3148) Glyco_hydro_3_C PF01915.22 AJD70810.1 - 1.5e-62 211.2 0.0 1.1e-61 208.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 AJD70810.1 - 1.9e-48 165.5 0.0 5.3e-48 164.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain PA14 PF07691.12 AJD70810.1 - 4.6e-31 107.6 0.0 3.5e-30 104.7 0.0 2.1 1 1 0 1 1 1 1 PA14 domain Fn3-like PF14310.6 AJD70810.1 - 1.9e-18 66.3 0.0 4.2e-18 65.2 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain GLEYA PF10528.9 AJD70810.1 - 0.00015 22.1 0.0 0.00041 20.7 0.0 1.8 1 0 0 1 1 1 1 GLEYA domain Mannitol_dh_C PF08125.13 AJD70811.1 - 6.2e-62 209.3 0.0 8.6e-62 208.8 0.0 1.1 1 0 0 1 1 1 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 AJD70811.1 - 5e-37 127.4 0.0 9.7e-37 126.5 0.0 1.5 1 0 0 1 1 1 1 Mannitol dehydrogenase Rossmann domain Glyoxalase PF00903.25 AJD70812.1 - 0.012 15.8 0.0 0.022 14.9 0.0 1.5 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Kelch_6 PF13964.6 AJD70814.1 - 4.7e-39 131.4 1.6 8.1e-07 29.1 0.0 6.2 2 1 4 6 6 6 6 Kelch motif Kelch_1 PF01344.25 AJD70814.1 - 3.1e-35 119.5 5.3 1.1e-06 28.1 0.1 7.0 6 1 0 6 6 6 6 Kelch motif Kelch_4 PF13418.6 AJD70814.1 - 2.6e-19 69.0 15.3 0.00042 20.3 0.4 6.7 5 2 1 6 6 6 5 Galactose oxidase, central domain Kelch_2 PF07646.15 AJD70814.1 - 6.3e-18 64.0 3.2 0.0051 16.8 0.0 6.3 7 0 0 7 7 7 4 Kelch motif Kelch_3 PF13415.6 AJD70814.1 - 2.7e-15 56.2 21.2 0.00021 21.5 0.1 6.2 7 0 0 7 7 7 4 Galactose oxidase, central domain Kelch_5 PF13854.6 AJD70814.1 - 7.8e-14 51.3 3.0 0.00034 20.5 0.0 6.2 6 0 0 6 6 6 3 Kelch motif DUF1668 PF07893.13 AJD70814.1 - 8.4e-05 22.1 0.0 0.25 10.7 0.0 3.3 2 1 1 3 3 3 2 Protein of unknown function (DUF1668) PQQ_3 PF13570.6 AJD70814.1 - 0.11 13.0 16.6 1.1 9.8 1.1 5.4 5 1 1 6 6 6 0 PQQ-like domain TetR_N PF00440.23 AJD70815.1 - 6.3e-13 48.3 0.0 1.8e-12 46.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_22 PF17928.1 AJD70815.1 - 0.0002 21.7 0.6 0.00035 20.9 0.6 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_15 PF17918.1 AJD70815.1 - 0.21 12.4 3.9 0.22 12.3 1.9 2.2 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Aldedh PF00171.22 AJD70816.1 - 3.5e-97 325.8 0.5 4.1e-97 325.6 0.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 AJD70816.1 - 0.053 13.5 2.2 0.18 11.9 2.2 2.0 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated RuvB_N PF05496.12 AJD70816.1 - 0.17 11.6 0.0 0.35 10.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF3253 PF11625.8 AJD70816.1 - 3.6 7.9 7.3 8.6 6.7 0.1 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF3253) MFS_1 PF07690.16 AJD70817.1 - 5.1e-08 32.2 52.8 1.8e-05 23.8 21.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AJD70817.1 - 0.076 12.3 47.6 0.11 11.8 47.6 1.1 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Aldolase_II PF00596.21 AJD70818.1 - 0.038 13.9 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain Aminotran_3 PF00202.21 AJD70819.1 - 1.9e-30 105.8 0.0 2.3e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_3 PF00202.21 AJD70820.1 - 6.7e-16 57.9 0.0 8.8e-16 57.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aldolase_II PF00596.21 AJD70821.1 - 1.3e-40 139.3 0.1 1.6e-40 139.0 0.1 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain RTC PF01137.21 AJD70821.1 - 0.035 13.3 0.0 0.16 11.2 0.0 1.8 1 1 0 1 1 1 0 RNA 3'-terminal phosphate cyclase FGGY_N PF00370.21 AJD70822.1 - 1.1e-34 120.2 0.0 7.5e-34 117.4 0.0 2.0 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 AJD70822.1 - 7.9e-30 104.1 0.1 2.2e-29 102.6 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain HTH_38 PF13936.6 AJD70822.1 - 0.098 12.4 0.0 25 4.7 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain Gcw_chp PF09694.10 AJD70823.1 - 9.7e-10 38.8 0.2 4.5e-09 36.6 0.2 1.9 1 1 0 1 1 1 1 Bacterial protein of unknown function (Gcw_chp) DUF2147 PF09917.9 AJD70824.1 - 8.5e-14 52.2 0.0 1.2e-13 51.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2147) SGL PF08450.12 AJD70825.1 - 4.7e-51 173.7 0.0 5.5e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Str_synth PF03088.16 AJD70825.1 - 0.00024 21.1 0.0 0.0029 17.7 0.0 2.8 3 1 0 3 3 3 1 Strictosidine synthase NHL PF01436.21 AJD70825.1 - 0.0014 18.6 0.6 1.5 9.0 0.0 4.0 4 0 0 4 4 4 1 NHL repeat Arylesterase PF01731.20 AJD70825.1 - 0.008 16.4 0.0 0.024 14.8 0.0 1.8 1 0 0 1 1 1 1 Arylesterase eIF_4EBP PF05456.11 AJD70825.1 - 0.12 12.3 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) PQQ_3 PF13570.6 AJD70825.1 - 2.6 8.6 10.3 0.95 10.0 1.1 4.2 4 1 0 4 4 4 0 PQQ-like domain Glyco_hydro_10 PF00331.20 AJD70826.1 - 3.9e-98 328.5 0.0 4.6e-98 328.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 AP_endonuc_2 PF01261.24 AJD70826.1 - 0.00022 20.7 0.0 0.00068 19.1 0.0 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF2201 PF09967.9 AJD70826.1 - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 VWA-like domain (DUF2201) Glyco_hydro2_C5 PF18565.1 AJD70827.1 - 4.6e-33 113.2 0.0 9.4e-33 112.1 0.0 1.6 1 0 0 1 1 1 1 Glycoside hydrolase family 2 C-terminal domain 5 Glyco_hydro_2_C PF02836.17 AJD70827.1 - 1.3e-29 103.3 0.0 3.4e-29 101.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, TIM barrel domain DUF4982 PF16355.5 AJD70827.1 - 3.9e-23 81.1 0.0 1.2e-22 79.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4982) Glyco_hydro_2_N PF02837.18 AJD70827.1 - 2e-13 50.6 0.0 8.2e-13 48.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 AJD70827.1 - 1.5e-11 44.9 0.0 4.5e-11 43.4 0.0 1.9 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Invasin_D3 PF09134.10 AJD70827.1 - 0.00029 21.1 0.3 0.0039 17.4 0.0 2.4 2 0 0 2 2 2 1 Invasin, domain 3 BetaGal_dom4_5 PF13364.6 AJD70827.1 - 0.056 14.0 0.0 0.23 12.1 0.0 2.0 2 0 0 2 2 2 0 Beta-galactosidase jelly roll domain UxaC PF02614.14 AJD70828.1 - 3.2e-71 240.6 0.0 4e-71 240.3 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase Glyco_hydro_10 PF00331.20 AJD70829.1 - 1e-40 139.9 0.0 1.2e-40 139.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 DisA-linker PF10635.9 AJD70829.1 - 0.027 14.3 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 DisA bacterial checkpoint controller linker region Glyco_hydro_cc PF11790.8 AJD70829.1 - 0.076 12.6 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase catalytic core Trp_oprn_chp PF09534.10 AJD70830.1 - 0.084 12.7 10.0 0.11 12.3 10.0 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) AtpR PF12966.7 AJD70830.1 - 0.77 10.2 10.3 0.56 10.7 1.9 2.8 1 1 1 3 3 3 0 N-ATPase, AtpR subunit Glyco_hydro_10 PF00331.20 AJD70831.1 - 8.1e-52 176.3 0.0 9.7e-52 176.1 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 Cellulase PF00150.18 AJD70831.1 - 0.0029 17.1 0.0 0.23 10.8 0.0 2.2 2 0 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.8 AJD70831.1 - 0.005 16.4 0.1 0.026 14.1 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core MFS_1 PF07690.16 AJD70832.1 - 4e-57 193.8 53.1 4.8e-56 190.2 39.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AJD70832.1 - 5e-09 35.5 23.4 1.5e-06 27.4 9.3 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 AJD70832.1 - 1.1e-05 24.9 9.3 1.1e-05 24.9 9.3 2.1 2 0 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB PTR2 PF00854.21 AJD70832.1 - 0.0017 17.2 3.2 0.0017 17.2 3.2 2.6 2 1 1 3 3 3 1 POT family TonB_dep_Rec PF00593.24 AJD70833.1 - 7.4e-33 115.1 34.6 7.4e-33 115.1 34.6 2.3 1 1 0 2 2 2 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AJD70833.1 - 2.8e-16 59.5 1.7 6.3e-16 58.3 1.7 1.6 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family Plug PF07715.15 AJD70833.1 - 1.1e-13 51.6 0.5 1.1e-13 51.6 0.5 3.3 3 1 1 4 4 4 1 TonB-dependent Receptor Plug Domain GDPD_2 PF13653.6 AJD70833.1 - 0.0082 16.6 0.2 0.13 12.8 0.2 2.8 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family MFS_2 PF13347.6 AJD70834.1 - 1.7e-86 290.4 36.2 7.4e-56 189.5 19.8 2.0 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_1 PF07690.16 AJD70834.1 - 7.5e-13 48.1 46.9 1.8e-07 30.4 18.5 3.1 1 1 2 3 3 3 3 Major Facilitator Superfamily Glyco_hydro_43 PF04616.14 AJD70835.1 - 1.3e-26 93.6 4.6 3.6e-25 88.8 4.6 2.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 DUF5005 PF16396.5 AJD70835.1 - 0.16 10.6 0.1 0.32 9.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5005) Lipocalin_2 PF08212.12 AJD70836.1 - 6.3e-44 149.4 0.8 7.3e-44 149.2 0.8 1.0 1 0 0 1 1 1 1 Lipocalin-like domain 3HCDH_RFF PF18321.1 AJD70836.1 - 0.0046 17.4 0.0 0.0084 16.5 0.0 1.5 1 0 0 1 1 1 1 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain UBA PF00627.31 AJD70836.1 - 0.039 13.9 0.1 0.073 13.0 0.1 1.4 1 0 0 1 1 1 0 UBA/TS-N domain DUF1254 PF06863.12 AJD70836.1 - 0.067 13.3 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1254) Lipocalin PF00061.23 AJD70836.1 - 0.071 13.3 0.0 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 Lipocalin / cytosolic fatty-acid binding protein family RraB PF06877.11 AJD70837.1 - 1.3e-18 67.6 0.0 1.5e-18 67.4 0.0 1.0 1 0 0 1 1 1 1 Regulator of ribonuclease activity B HEPN_MAE_28990 PF18737.1 AJD70842.1 - 1.8e-40 139.2 0.0 2e-40 139.0 0.0 1.0 1 0 0 1 1 1 1 MAE_28990/MAE_18760-like HEPN HEPN_RiboL-PSP PF18735.1 AJD70842.1 - 1.3e-27 97.0 0.0 1.5e-27 96.8 0.0 1.1 1 0 0 1 1 1 1 RiboL-PSP-HEPN MADF_DNA_bdg PF10545.9 AJD70842.1 - 0.076 13.3 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like SmpA_OmlA PF04355.13 AJD70843.1 - 0.0052 16.5 0.1 0.016 15.0 0.0 1.8 2 0 0 2 2 2 1 SmpA / OmlA family DUF465 PF04325.13 AJD70844.1 - 3.9e-13 49.2 7.0 5e-13 48.9 7.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF465) FlxA PF14282.6 AJD70844.1 - 0.044 13.8 0.4 0.051 13.6 0.4 1.0 1 0 0 1 1 1 0 FlxA-like protein IFP_35_N PF07334.13 AJD70844.1 - 0.074 13.1 2.7 0.12 12.4 2.7 1.4 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus ADH_zinc_N PF00107.26 AJD70845.1 - 4.1e-15 55.9 1.2 7.5e-15 55.1 1.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD70845.1 - 9.2e-10 38.4 0.0 1.8e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 AJD70845.1 - 8.7e-08 33.3 0.1 1.6e-07 32.4 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Acyltransferase PF01553.21 AJD70846.1 - 4.4e-24 84.6 0.0 8.9e-24 83.6 0.0 1.5 1 0 0 1 1 1 1 Acyltransferase Peripla_BP_3 PF13377.6 AJD70848.1 - 1.3e-34 120.0 0.6 1.5e-33 116.5 0.3 2.2 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AJD70848.1 - 6e-26 91.5 0.0 9.4e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 AJD70848.1 - 9.6e-18 63.7 1.4 2.8e-17 62.2 1.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 AJD70848.1 - 7.2e-17 61.8 0.0 9.5e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_31 PF13560.6 AJD70848.1 - 0.00034 20.9 0.3 0.0008 19.7 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AJD70848.1 - 0.044 13.7 0.2 0.22 11.4 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_3 PF01381.22 AJD70848.1 - 0.059 13.4 0.0 0.14 12.3 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix TetR_N PF00440.23 AJD70848.1 - 0.077 12.8 0.2 0.26 11.1 0.2 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_ISL3 PF13542.6 AJD70848.1 - 0.1 12.1 0.9 0.2 11.1 0.5 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.15 AJD70848.1 - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Phage_int_SAM_2 PF12834.7 AJD70848.1 - 0.14 12.9 0.1 0.3 11.8 0.1 1.5 1 0 0 1 1 1 0 Phage integrase, N-terminal Trp_repressor PF01371.19 AJD70848.1 - 0.16 12.1 0.2 0.36 11.0 0.2 1.6 1 1 1 2 2 2 0 Trp repressor protein TonB_dep_Rec PF00593.24 AJD70849.1 - 2.2e-22 80.6 34.0 2.2e-22 80.6 34.0 2.5 1 1 1 2 2 2 1 TonB dependent receptor CarboxypepD_reg PF13620.6 AJD70849.1 - 4.7e-08 33.2 7.1 1.5e-07 31.6 6.2 2.5 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 AJD70849.1 - 0.068 13.2 0.4 0.19 11.7 0.4 1.8 1 0 0 1 1 1 0 CarboxypepD_reg-like domain SdrD_B PF17210.3 AJD70849.1 - 0.22 11.8 4.5 0.3 11.3 2.7 2.2 2 0 0 2 2 2 0 SdrD B-like domain TonB_dep_Rec PF00593.24 AJD70850.1 - 3.6e-17 63.4 33.7 3.6e-17 63.4 33.7 2.2 3 0 0 3 3 3 1 TonB dependent receptor CarboxypepD_reg PF13620.6 AJD70850.1 - 1e-05 25.7 8.5 1.3e-05 25.4 6.4 2.5 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 AJD70850.1 - 0.019 14.9 1.5 0.064 13.3 1.5 2.0 1 0 0 1 1 1 0 CarboxypepD_reg-like domain SdrD_B PF17210.3 AJD70850.1 - 0.082 13.1 3.0 0.09 13.0 0.7 2.3 2 0 0 2 2 2 0 SdrD B-like domain Trp_halogenase PF04820.14 AJD70851.1 - 7.3e-199 661.3 0.0 8.5e-199 661.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan halogenase FAD_oxidored PF12831.7 AJD70851.1 - 9.4e-05 21.9 1.6 0.24 10.7 1.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 AJD70851.1 - 0.0014 18.3 2.3 0.0082 15.8 1.8 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AJD70851.1 - 0.0062 15.8 0.1 0.016 14.5 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AJD70851.1 - 0.02 14.9 0.9 0.51 10.3 0.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 AJD70851.1 - 0.026 13.8 0.1 0.044 13.0 0.1 1.3 1 0 0 1 1 1 0 Thi4 family HI0933_like PF03486.14 AJD70851.1 - 0.029 13.1 0.3 0.041 12.6 0.3 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_8 PF13450.6 AJD70851.1 - 0.029 14.6 0.3 0.11 12.8 0.3 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 AJD70851.1 - 0.07 13.7 0.2 0.16 12.6 0.2 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AJD70851.1 - 0.098 11.7 0.8 0.35 9.9 1.5 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 AJD70851.1 - 0.37 9.8 1.8 0.56 9.2 0.8 1.8 2 0 0 2 2 2 0 FAD binding domain OMPdecase PF00215.24 AJD70852.1 - 6.1e-39 133.9 0.0 6.9e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Acid_phosphat_B PF03767.14 AJD70853.1 - 5.3e-43 147.2 0.0 7.6e-43 146.7 0.0 1.2 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 AJD70853.1 - 8e-07 29.1 0.0 4.2e-06 26.8 0.0 2.1 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF480 PF04337.12 AJD70855.1 - 2.4e-53 180.3 3.3 2.8e-53 180.0 1.2 1.9 1 1 1 2 2 2 1 Protein of unknown function, DUF480 DUF3418 PF11898.8 AJD70855.1 - 0.04 12.6 5.0 0.054 12.2 5.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) Trimer_CC PF08954.11 AJD70855.1 - 0.04 13.5 0.7 0.15 11.6 0.7 2.1 1 0 0 1 1 1 0 Trimerisation motif Cdc6_C PF09079.11 AJD70855.1 - 0.12 12.3 0.2 5.9 6.9 0.0 2.4 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain SlyX PF04102.12 AJD70855.1 - 0.39 11.3 5.1 0.42 11.3 0.3 2.9 3 0 0 3 3 3 0 SlyX ABC_tran_CTD PF16326.5 AJD70855.1 - 0.59 10.4 3.2 0.8 10.0 1.0 2.3 2 1 1 3 3 3 0 ABC transporter C-terminal domain DUF4140 PF13600.6 AJD70855.1 - 1.8 9.1 6.0 0.58 10.6 2.5 2.0 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4272 PF14094.6 AJD70856.1 - 6.4e-60 201.9 0.6 8.5e-60 201.5 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4272) Acetyltransf_3 PF13302.7 AJD70857.1 - 1.2e-25 90.8 0.0 1.5e-25 90.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AJD70857.1 - 2.8e-07 30.8 0.0 3.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 AJD70857.1 - 0.0019 17.9 0.0 0.012 15.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJD70857.1 - 0.14 12.2 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein SBP_bac_11 PF13531.6 AJD70857.1 - 0.14 11.9 0.0 0.47 10.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Acetyltransf_7 PF13508.7 AJD70857.1 - 0.14 12.6 0.0 0.22 12.0 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UvrD-helicase PF00580.21 AJD70858.1 - 4.7e-71 239.9 0.0 1.4e-68 231.8 0.0 2.3 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 AJD70858.1 - 9.6e-61 206.1 0.0 4e-30 105.4 0.0 2.4 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 AJD70858.1 - 2.9e-35 121.7 0.0 1.2e-34 119.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 AJD70858.1 - 2.4e-11 43.3 0.0 6.8e-11 41.8 0.0 1.8 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AJD70858.1 - 2e-06 27.7 1.5 0.01 15.5 0.1 2.4 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 AJD70858.1 - 2.6e-05 24.1 0.0 0.28 10.9 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 AJD70858.1 - 0.00033 20.3 0.0 0.036 13.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain DUF4259 PF14078.6 AJD70858.1 - 0.15 12.8 1.6 1.4 9.6 0.7 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4259) TK PF00265.18 AJD70859.1 - 1.2e-48 165.3 0.0 1.4e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_22 PF13401.6 AJD70859.1 - 0.0037 17.5 0.0 0.0077 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AJD70859.1 - 0.0061 16.3 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain KdpD PF02702.17 AJD70859.1 - 0.016 14.7 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain GAF PF01590.26 AJD70860.1 - 1.1e-07 32.5 0.1 2.8e-07 31.2 0.1 1.6 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 AJD70860.1 - 1.6e-07 31.3 0.1 4.4e-07 29.8 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 AJD70860.1 - 6.5e-06 26.6 0.0 5.4e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 AJD70860.1 - 8.4e-05 22.9 0.3 0.00091 19.5 0.0 2.3 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 AJD70860.1 - 0.023 15.0 0.0 0.052 13.9 0.0 1.7 1 0 0 1 1 1 0 GAF domain MdoG PF04349.12 AJD70861.1 - 8.8e-196 651.4 0.0 1e-195 651.3 0.0 1.0 1 0 0 1 1 1 1 Periplasmic glucan biosynthesis protein, MdoG TAT_signal PF10518.9 AJD70861.1 - 0.0061 16.4 0.6 0.015 15.1 0.6 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DnaT PF17948.1 AJD70861.1 - 0.062 13.0 0.2 11 5.8 0.0 3.1 3 0 0 3 3 3 0 DnaT DNA-binding domain DUF4380 PF14315.6 AJD70862.1 - 1.2e-130 434.8 3.0 1.4e-130 434.6 3.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) Fapy_DNA_glyco PF01149.24 AJD70863.1 - 3.9e-33 114.5 0.0 7e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 AJD70863.1 - 1.7e-26 92.0 0.0 3.2e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 AJD70863.1 - 2.4e-06 27.3 4.0 3.8e-06 26.6 4.0 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.11 AJD70863.1 - 0.23 10.1 0.0 0.32 9.7 0.0 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) BenE PF03594.13 AJD70864.1 - 1.5e-137 458.4 47.0 1.7e-137 458.2 47.0 1.0 1 0 0 1 1 1 1 Benzoate membrane transport protein T7SS_ESX1_EccB PF05108.13 AJD70864.1 - 0.05 12.3 0.4 0.12 11.0 0.4 1.6 1 0 0 1 1 1 0 Type VII secretion system ESX-1, transport TM domain B PHY PF00360.20 AJD70865.1 - 6.3e-54 182.1 0.2 1.1e-53 181.3 0.2 1.4 1 0 0 1 1 1 1 Phytochrome region GAF PF01590.26 AJD70865.1 - 1.6e-17 64.4 0.2 8.3e-17 62.1 0.1 2.3 2 0 0 2 2 2 1 GAF domain PAS_2 PF08446.11 AJD70865.1 - 9.7e-14 51.9 0.0 7.8e-13 49.0 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 AJD70865.1 - 7.7e-11 42.2 4.6 6.1e-05 23.2 0.1 4.8 4 1 1 5 5 5 2 PAS fold PAS_8 PF13188.7 AJD70865.1 - 4.9e-09 36.0 0.1 0.0021 18.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 AJD70865.1 - 1.1e-08 35.2 0.0 0.0023 18.1 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 AJD70865.1 - 6.8e-07 29.3 0.0 0.0097 15.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold Heme_oxygenase PF01126.20 AJD70866.1 - 8.9e-13 48.5 0.0 3.9e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 Heme oxygenase T2SSppdC PF12528.8 AJD70866.1 - 0.064 14.0 0.2 0.16 12.7 0.2 1.6 1 0 0 1 1 1 0 Type II secretion prepilin peptidase dependent protein C MFS_1 PF07690.16 AJD70867.1 - 8.2e-54 182.9 42.2 8.2e-54 182.9 42.2 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 AJD70867.1 - 1.2e-11 43.8 17.5 9.4e-09 34.3 4.3 2.2 1 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 AJD70867.1 - 4.9e-11 42.1 9.8 4.9e-11 42.1 9.8 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 AJD70867.1 - 7.3e-08 31.7 15.3 1e-05 24.6 4.0 2.6 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 AJD70867.1 - 2.8e-06 26.9 27.8 5e-06 26.0 27.8 1.6 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB TRI12 PF06609.13 AJD70867.1 - 0.0088 14.5 9.6 0.0061 15.0 2.4 2.1 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Folate_carrier PF01770.18 AJD70867.1 - 0.14 10.9 0.0 0.25 10.1 0.0 1.4 1 0 0 1 1 1 0 Reduced folate carrier SLT_2 PF13406.6 AJD70868.1 - 1.8e-99 332.6 0.0 2.4e-99 332.3 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain Aldose_epim PF01263.20 AJD70868.1 - 3.4e-40 138.2 0.0 4.4e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase PG_binding_1 PF01471.18 AJD70868.1 - 1e-09 38.4 0.3 3e-09 36.9 0.3 1.9 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 AJD70868.1 - 0.0081 16.4 1.0 0.054 13.8 0.3 2.4 1 1 1 2 2 2 1 Predicted Peptidoglycan domain UPF0225 PF17775.1 AJD70870.1 - 1.3e-23 83.6 0.0 1.6e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 UPF0225 domain SEC-C PF02810.15 AJD70870.1 - 5.7e-05 22.9 6.0 7.8e-05 22.5 6.0 1.2 1 0 0 1 1 1 1 SEC-C motif CW_binding_1 PF01473.20 AJD70870.1 - 0.21 12.0 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative cell wall binding repeat TauE PF01925.19 AJD70871.1 - 1.8e-37 129.2 34.6 2.1e-37 129.0 34.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Syndecan PF01034.20 AJD70871.1 - 0.23 11.4 0.0 0.23 11.4 0.0 2.6 2 1 0 2 2 2 0 Syndecan domain AAA_29 PF13555.6 AJD70872.1 - 1.7e-22 78.9 0.0 5.1e-22 77.4 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 AJD70872.1 - 4.1e-21 75.0 0.1 1.6e-20 73.1 0.1 2.2 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 AJD70872.1 - 9.8e-06 26.2 0.0 9.8e-06 26.2 0.0 4.0 5 0 0 5 5 5 1 AAA domain ABC_tran PF00005.27 AJD70872.1 - 0.00018 22.0 3.7 0.0049 17.4 0.0 3.8 4 0 0 4 4 4 1 ABC transporter AAA_15 PF13175.6 AJD70872.1 - 0.0041 16.9 0.0 0.0064 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AJD70872.1 - 0.012 15.5 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70872.1 - 0.012 15.0 0.0 0.035 13.5 0.0 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AJD70872.1 - 0.018 15.3 0.9 2.3 8.5 0.0 4.3 4 0 0 4 4 4 0 AAA domain RsgA_GTPase PF03193.16 AJD70872.1 - 0.038 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase TRAF_BIRC3_bd PF16673.5 AJD70872.1 - 0.045 13.5 0.6 0.29 11.0 0.6 2.4 1 0 0 1 1 1 0 TNF receptor-associated factor BIRC3 binding domain MMR_HSR1 PF01926.23 AJD70872.1 - 0.072 13.2 1.2 0.94 9.6 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 AJD70872.1 - 0.076 13.2 0.0 0.076 13.2 0.0 5.0 5 1 1 6 6 6 0 AAA domain DUF2730 PF10805.8 AJD70872.1 - 2.2 8.4 4.3 19 5.4 0.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF4194 PF13835.6 AJD70873.1 - 6.6e-45 152.8 1.1 7.9e-45 152.6 1.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4194) DUF3375 PF11855.8 AJD70874.1 - 2e-149 498.6 34.2 2.3e-149 498.4 34.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) GTP_cyclohydroI PF01227.22 AJD70875.1 - 4.9e-73 244.4 0.0 5.6e-73 244.2 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 AJD70875.1 - 0.00032 20.8 0.0 0.00069 19.7 0.0 1.6 1 0 0 1 1 1 1 QueF-like protein XendoU PF09412.10 AJD70875.1 - 0.12 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Endoribonuclease XendoU MarR_2 PF12802.7 AJD70876.1 - 3.1e-10 39.8 0.7 7.2e-10 38.6 0.7 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 AJD70876.1 - 5.1e-09 35.9 0.2 1.4e-08 34.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AJD70876.1 - 3.5e-06 27.4 0.0 5.6e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 AJD70876.1 - 0.0002 21.1 0.7 0.0005 19.8 0.7 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.12 AJD70876.1 - 0.032 14.4 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Dimerisation2 PF16864.5 AJD70876.1 - 0.038 14.0 0.3 0.083 12.9 0.1 1.7 2 0 0 2 2 2 0 Dimerisation domain HTH_Crp_2 PF13545.6 AJD70876.1 - 0.041 13.9 0.1 0.096 12.7 0.1 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 AJD70876.1 - 0.12 12.6 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain SelB-wing_2 PF09106.11 AJD70876.1 - 2.3 8.5 5.4 4.7 7.5 0.2 2.8 3 0 0 3 3 3 0 Elongation factor SelB, winged helix DUF1656 PF07869.12 AJD70877.1 - 4.9e-21 74.5 7.1 7e-21 74.0 7.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1656) DUF4131 PF13567.6 AJD70877.1 - 0.64 9.7 6.9 0.68 9.6 6.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Biotin_lipoyl_2 PF13533.6 AJD70878.1 - 1.2e-18 66.7 8.2 2.7e-15 55.9 1.9 3.0 2 1 0 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 AJD70878.1 - 3.1e-17 63.2 1.0 1.9e-14 54.2 0.1 2.9 2 1 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 AJD70878.1 - 1.5e-14 53.8 3.1 2.4e-14 53.1 3.1 1.2 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD PF00529.20 AJD70878.1 - 0.00011 22.0 2.6 0.00029 20.7 2.6 2.0 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AJD70878.1 - 0.00031 20.5 0.1 0.99 9.3 0.0 2.4 2 0 0 2 2 2 2 Biotin-requiring enzyme CTV_P33 PF07184.11 AJD70878.1 - 0.01 14.9 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 0 Citrus tristeza virus P33 protein PTS_EIIA_1 PF00358.20 AJD70878.1 - 0.081 12.7 0.0 9.4 6.0 0.0 2.3 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 OEP PF02321.18 AJD70878.1 - 7.8 6.3 14.6 21 4.8 14.8 1.6 2 0 0 2 2 2 0 Outer membrane efflux protein OEP PF02321.18 AJD70879.1 - 5.8e-39 133.8 23.6 5.5e-23 81.8 9.1 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein Cnn_1N PF07989.11 AJD70879.1 - 0.15 12.2 0.6 1.2 9.3 0.0 2.6 3 0 0 3 3 3 0 Centrosomin N-terminal motif 1 FUSC PF04632.12 AJD70880.1 - 8.7e-183 609.4 54.4 1.7e-182 608.5 54.4 1.4 1 1 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.6 AJD70880.1 - 7.9e-12 45.4 10.8 7.9e-12 45.4 10.8 3.2 2 1 0 3 3 3 2 Fusaric acid resistance protein-like ALMT PF11744.8 AJD70880.1 - 0.0011 17.9 5.8 0.0025 16.7 5.8 1.5 1 1 0 1 1 1 1 Aluminium activated malate transporter DNA_pol_lambd_f PF10391.9 AJD70880.1 - 0.086 12.7 0.2 0.23 11.3 0.2 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda ArAE_1 PF06081.11 AJD70880.1 - 0.69 10.1 20.8 0.068 13.3 1.3 4.0 3 1 1 4 4 4 0 Aromatic acid exporter family member 1 Sugar_tr PF00083.24 AJD70881.1 - 5.8e-35 121.0 34.7 9.9e-33 113.7 34.7 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AJD70881.1 - 1.3e-22 80.2 41.9 1.3e-22 80.2 41.9 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily CCSMST1 PF15013.6 AJD70881.1 - 0.51 10.5 1.6 3.8 7.7 0.0 2.8 3 0 0 3 3 3 0 CCSMST1 family DUF4519 PF15012.6 AJD70881.1 - 0.65 10.2 2.1 0.96 9.7 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) PTS_2-RNA PF01885.16 AJD70882.1 - 5.2e-05 23.4 0.0 6.4e-05 23.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PLDc_2 PF13091.6 AJD70883.1 - 2.8e-42 143.8 0.0 1.6e-27 96.0 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AJD70883.1 - 1.9e-08 34.1 0.8 0.0047 17.1 0.1 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif Strep_SA_rep PF06696.11 AJD70885.1 - 0.15 12.1 0.2 0.23 11.5 0.2 1.3 1 0 0 1 1 1 0 Streptococcal surface antigen repeat ParE_toxin PF05016.15 AJD70886.1 - 1.1e-12 48.4 0.1 7.9e-12 45.6 0.1 2.1 2 0 0 2 2 2 1 ParE toxin of type II toxin-antitoxin system, parDE DUF4719 PF15843.5 AJD70886.1 - 0.72 9.9 8.1 0.38 10.8 5.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4719) Arc PF03869.14 AJD70887.1 - 5e-05 23.0 0.0 6.5e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Arc-like DNA binding domain PIN PF01850.21 AJD70888.1 - 2.2e-18 66.9 0.1 2.5e-18 66.7 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 AJD70888.1 - 0.021 14.7 0.4 1.3 8.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) Esterase PF00756.20 AJD70889.1 - 7.3e-16 58.6 0.2 1.5e-15 57.5 0.1 1.7 2 1 0 2 2 2 1 Putative esterase Peptidase_S9 PF00326.21 AJD70889.1 - 0.015 14.8 0.1 0.036 13.5 0.0 1.6 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF2384 PF09722.10 AJD70890.1 - 4.3e-05 23.5 0.3 8.8e-05 22.5 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2384) PseudoU_synth_2 PF00849.22 AJD70893.1 - 2.7e-27 95.8 0.0 3.4e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase Chlam_PMP PF02415.17 AJD70894.1 - 0.7 10.5 40.3 1.6 9.4 0.0 8.8 8 1 0 8 8 8 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat HTH_Tnp_1 PF01527.20 AJD70895.1 - 7.6e-16 58.2 0.8 9.5e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 AJD70895.1 - 2.9e-06 27.3 0.1 4.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AJD70895.1 - 4.9e-06 26.2 0.9 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 AJD70895.1 - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.6 AJD70895.1 - 0.00064 19.8 0.1 0.0041 17.2 0.0 2.1 1 1 1 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.6 AJD70895.1 - 0.00095 19.2 0.2 0.0092 16.0 0.0 2.5 2 1 0 2 2 2 1 HTH domain LZ_Tnp_IS481 PF13011.6 AJD70895.1 - 0.0011 19.5 0.4 0.0028 18.2 0.4 1.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 AJD70895.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AJD70895.1 - 0.0045 16.4 0.1 0.01 15.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 AJD70895.1 - 0.0049 16.7 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 AJD70895.1 - 0.0082 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein TetR_N PF00440.23 AJD70895.1 - 0.016 15.0 0.5 0.039 13.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 AJD70895.1 - 0.019 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Takusan PF04822.13 AJD70895.1 - 0.022 14.7 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Takusan HTH_10 PF04967.12 AJD70895.1 - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 AJD70895.1 - 0.029 14.7 1.0 0.039 14.3 1.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 AJD70895.1 - 0.031 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 AJD70895.1 - 0.046 13.7 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 GYD domain HTH_19 PF12844.7 AJD70895.1 - 0.058 13.4 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 AJD70895.1 - 0.073 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 AJD70895.1 - 0.11 12.8 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein rve PF00665.26 AJD70896.1 - 6.1e-25 87.7 1.0 8.1e-25 87.3 0.3 1.5 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AJD70896.1 - 1.2e-14 54.2 1.9 3.2e-14 52.8 1.9 1.7 1 0 0 1 1 1 1 HTH-like domain DDE_Tnp_IS240 PF13610.6 AJD70896.1 - 0.0032 17.7 0.1 0.0047 17.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain DUF1348 PF07080.11 AJD70897.1 - 3.8e-49 165.9 7.7 4.2e-49 165.8 7.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1348) SnoaL_2 PF12680.7 AJD70897.1 - 0.015 15.9 0.2 0.02 15.5 0.2 1.2 1 0 0 1 1 1 0 SnoaL-like domain DDE_Tnp_1 PF01609.21 AJD70898.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain CT_A_B PF02626.15 AJD70899.1 - 3.3e-93 312.1 0.0 8.8e-93 310.7 0.0 1.7 2 0 0 2 2 2 1 Carboxyltransferase domain, subdomain A and B CPSase_L_D2 PF02786.17 AJD70899.1 - 7.9e-62 208.5 0.0 1.5e-61 207.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CT_C_D PF02682.16 AJD70899.1 - 1.3e-46 159.0 0.0 3e-46 157.7 0.0 1.6 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D Biotin_carb_N PF00289.22 AJD70899.1 - 1e-40 138.7 0.1 4e-40 136.8 0.1 2.1 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 AJD70899.1 - 6.5e-32 109.8 0.0 1.8e-31 108.4 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 AJD70899.1 - 2e-15 56.3 1.2 6.1e-15 54.8 1.2 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 AJD70899.1 - 4.9e-11 42.5 0.0 1e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Biotin_lipoyl_2 PF13533.6 AJD70899.1 - 9.7e-08 31.7 2.2 0.00011 22.0 0.0 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp PF02222.22 AJD70899.1 - 1.3e-05 24.9 0.0 9.8e-05 22.0 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 AJD70899.1 - 0.024 14.1 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_Ter PF15632.6 AJD70899.1 - 0.076 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon RnfC_N PF13375.6 AJD70899.1 - 0.16 11.9 0.7 0.45 10.5 0.4 1.9 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 AJD70899.1 - 0.49 11.1 1.8 2.7 8.8 0.0 2.9 2 1 0 3 3 2 0 HlyD family secretion protein Amidase PF01425.21 AJD70900.1 - 2e-83 280.8 0.1 3.1e-83 280.3 0.1 1.2 1 0 0 1 1 1 1 Amidase DDE_Tnp_1 PF01609.21 AJD70901.1 - 1e-26 93.9 0.1 1.8e-25 89.8 0.0 2.1 2 0 0 2 2 2 2 Transposase DDE domain DUF1348 PF07080.11 AJD70902.1 - 2.7e-15 56.4 0.2 2.9e-15 56.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1348) Lipin_N PF04571.14 AJD70903.1 - 0.019 15.0 0.0 0.034 14.1 0.0 1.5 2 0 0 2 2 2 0 lipin, N-terminal conserved region Peptidase_M61 PF05299.12 AJD70904.1 - 8.3e-26 90.7 0.0 1.4e-25 90.0 0.0 1.3 1 0 0 1 1 1 1 M61 glycyl aminopeptidase Peptidase_M61_N PF17899.1 AJD70904.1 - 8.3e-25 87.8 0.0 1.2e-24 87.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase M61 N-terminal domain PDZ_6 PF17820.1 AJD70904.1 - 2.2e-05 24.2 0.1 4.9e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 AJD70904.1 - 0.031 14.6 0.0 0.062 13.6 0.0 1.4 1 0 0 1 1 1 0 PDZ domain IU_nuc_hydro PF01156.19 AJD70906.1 - 3.3e-11 43.3 0.1 4.5e-11 42.9 0.1 1.1 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase AAA_19 PF13245.6 AJD70907.1 - 1.4e-29 103.4 0.0 2.7e-29 102.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AJD70907.1 - 4.2e-29 101.6 2.0 1.1e-27 97.1 1.3 2.9 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 AJD70907.1 - 2.6e-15 56.0 0.1 6e-15 54.8 0.1 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 AJD70907.1 - 7.7e-11 42.2 0.6 2.9e-06 27.2 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 AJD70907.1 - 1.7e-10 41.1 1.3 7.2e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain Helicase_RecD PF05127.14 AJD70907.1 - 3.4e-07 30.3 0.3 3.1e-06 27.2 0.3 2.1 1 1 0 1 1 1 1 Helicase AAA_22 PF13401.6 AJD70907.1 - 9.6e-07 29.1 0.0 6.4e-06 26.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain SH3_13 PF18335.1 AJD70907.1 - 1.1e-05 25.1 0.0 2.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent RecD-like DNA helicase SH3 domain UvrD-helicase PF00580.21 AJD70907.1 - 2.7e-05 23.9 0.7 0.00011 21.9 0.2 1.9 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 AJD70907.1 - 5.9e-05 22.6 0.0 8.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain T2SSE PF00437.20 AJD70907.1 - 0.0033 16.5 0.1 0.0057 15.7 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_28 PF13521.6 AJD70907.1 - 0.0088 16.3 0.1 0.019 15.2 0.1 1.6 1 0 0 1 1 1 1 AAA domain Phageshock_PspD PF09584.10 AJD70907.1 - 0.016 15.2 0.1 0.14 12.2 0.0 2.7 2 0 0 2 2 2 0 Phage shock protein PspD (Phageshock_PspD) Herpes_Helicase PF02689.14 AJD70907.1 - 0.031 12.2 0.1 1.3 6.8 0.0 2.0 2 0 0 2 2 2 0 Helicase DEAD PF00270.29 AJD70907.1 - 0.054 13.3 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase DUF2075 PF09848.9 AJD70907.1 - 0.077 12.2 0.2 0.2 10.9 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 AJD70907.1 - 0.14 12.0 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase PF06745.13 AJD70907.1 - 0.22 10.8 0.0 0.33 10.2 0.0 1.2 1 0 0 1 1 1 0 KaiC NTPase_1 PF03266.15 AJD70907.1 - 0.28 11.1 0.1 0.5 10.2 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.6 AJD70907.1 - 0.98 9.8 10.5 0.048 14.0 2.0 3.2 3 1 0 3 3 3 0 AAA ATPase domain DUF3236 PF11576.8 AJD70908.1 - 0.21 11.3 0.0 0.21 11.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) UvrD-helicase PF00580.21 AJD70910.1 - 5.4e-51 174.0 0.0 1.8e-50 172.2 0.0 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 AJD70910.1 - 2e-26 93.2 0.0 6.7e-17 61.9 0.0 2.5 2 1 1 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 AJD70910.1 - 2.8e-18 66.6 0.0 3.7e-17 63.0 0.0 2.4 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 AJD70910.1 - 2.1e-09 37.0 0.0 0.00087 19.1 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 AJD70910.1 - 1.9e-06 28.0 0.0 8e-06 26.0 0.0 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 AJD70910.1 - 0.00027 20.7 4.0 0.0012 18.6 0.1 3.4 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.6 AJD70910.1 - 0.0045 17.3 0.2 2.4 8.5 0.0 3.5 3 1 0 3 3 3 1 AAA domain AAA_11 PF13086.6 AJD70910.1 - 0.12 12.1 0.0 0.29 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 AJD70910.1 - 0.29 10.3 1.9 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Exonuc_V_gamma PF04257.14 AJD70911.1 - 7.5e-211 702.3 0.0 8.8e-211 702.1 0.0 1.0 1 0 0 1 1 1 1 Exodeoxyribonuclease V, gamma subunit RecC_C PF17946.1 AJD70911.1 - 8.6e-47 159.5 6.2 8.6e-47 159.5 6.2 4.1 5 1 0 5 5 5 1 RecC C-terminal domain Nod_GRP PF07806.11 AJD70911.1 - 0.12 12.2 0.1 0.35 10.7 0.1 1.7 1 0 0 1 1 1 0 Nodule-specific GRP repeat Autotransporter PF03797.19 AJD70912.1 - 0.011 15.4 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Autotransporter beta-domain ABC_tran PF00005.27 AJD70913.1 - 1.6e-27 96.7 0.0 2.1e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 AJD70913.1 - 4.5e-05 23.1 0.1 8.4e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 AJD70913.1 - 0.0002 21.2 1.0 0.37 10.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AJD70913.1 - 0.00028 20.4 0.0 0.056 12.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AJD70913.1 - 0.00066 20.1 0.1 0.0012 19.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AJD70913.1 - 0.0032 17.4 0.1 0.0054 16.7 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 AJD70913.1 - 0.0052 17.1 0.0 0.012 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AJD70913.1 - 0.0098 16.4 0.0 0.014 15.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AJD70913.1 - 0.023 14.8 0.1 0.11 12.6 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 AJD70913.1 - 0.026 14.1 0.8 0.048 13.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AJD70913.1 - 0.032 13.0 0.1 0.32 9.7 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 AJD70913.1 - 0.066 12.9 0.6 0.13 11.9 0.6 1.7 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 AJD70913.1 - 0.086 12.2 0.1 1.7 7.9 0.1 2.0 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.6 AJD70913.1 - 0.18 12.0 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 AJD70913.1 - 0.3 11.1 0.7 0.48 10.5 0.7 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain T2SSE PF00437.20 AJD70913.1 - 0.48 9.4 2.4 0.6 9.1 0.2 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein MlaE PF02405.16 AJD70914.1 - 3.8e-68 229.3 13.2 4.4e-68 229.1 13.2 1.0 1 0 0 1 1 1 1 Permease MlaE Pkr1 PF08636.10 AJD70914.1 - 0.041 14.0 0.4 0.48 10.6 0.0 2.5 2 0 0 2 2 2 0 ER protein Pkr1 MlaD PF02470.20 AJD70915.1 - 2.8e-20 72.4 0.0 3.7e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 MlaD protein MlaC PF05494.12 AJD70916.1 - 3.2e-39 134.4 0.0 3.9e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 MlaC protein DUF3828 PF12883.7 AJD70916.1 - 0.029 14.7 0.0 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3828) STAS_2 PF13466.6 AJD70917.1 - 3.4e-10 40.1 6.4 4e-10 39.9 6.4 1.2 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 AJD70917.1 - 0.0017 17.9 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 STAS domain MlaA PF04333.13 AJD70918.1 - 5.7e-71 238.3 0.0 7.2e-71 237.9 0.0 1.1 1 0 0 1 1 1 1 MlaA lipoprotein Pheromone PF08015.11 AJD70918.1 - 5.7 8.1 8.0 1.3 10.1 0.3 2.6 1 1 1 2 2 2 0 Fungal mating-type pheromone DUF4440 PF14534.6 AJD70919.1 - 7.3e-13 48.9 1.4 9.1e-13 48.5 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 AJD70919.1 - 0.0035 17.6 0.5 0.0047 17.2 0.5 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.8 AJD70919.1 - 0.027 14.2 0.5 0.04 13.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3225) CaMKII_AD PF08332.10 AJD70919.1 - 0.041 14.0 0.1 0.054 13.6 0.1 1.4 1 1 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II association domain Imm75 PF15660.6 AJD70919.1 - 0.041 14.1 0.0 0.074 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative Immunity protein 75 GSHPx PF00255.19 AJD70920.1 - 2.1e-36 123.8 0.0 2.6e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 AJD70920.1 - 0.0001 22.2 0.0 0.00014 21.8 0.0 1.5 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AJD70920.1 - 0.00038 20.2 0.0 0.021 14.5 0.0 2.1 2 0 0 2 2 2 2 Redoxin Squash PF00299.18 AJD70921.1 - 0.32 11.1 10.6 0.64 10.1 4.8 2.7 2 0 0 2 2 2 0 Squash family serine protease inhibitor RmuC PF02646.16 AJD70922.1 - 6.3e-76 255.3 0.1 6.3e-76 255.3 0.1 3.3 2 1 2 4 4 4 1 RmuC family Apolipoprotein PF01442.18 AJD70922.1 - 0.00033 20.6 40.2 0.0013 18.6 30.5 3.7 2 1 1 3 3 3 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 AJD70922.1 - 0.083 12.9 16.6 6.8 6.7 4.2 4.5 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5446 PF17522.2 AJD70922.1 - 0.13 12.4 2.9 7.2 6.9 0.0 3.5 3 0 0 3 3 3 0 Family of unknown function (DUF5446) HSCB_C PF07743.13 AJD70922.1 - 0.41 11.2 22.2 4 8.0 2.9 5.1 3 1 2 5 5 5 0 HSCB C-terminal oligomerisation domain PhaP_Bmeg PF09602.10 AJD70922.1 - 7 6.6 14.3 4.6 7.1 5.4 3.6 3 1 1 4 4 4 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) GvpL_GvpF PF06386.11 AJD70922.1 - 9.5 6.1 22.4 0.14 12.1 8.5 3.1 1 1 1 3 3 3 0 Gas vesicle synthesis protein GvpL/GvpF ADH_zinc_N_2 PF13602.6 AJD70923.1 - 3.4e-23 83.2 0.7 5.6e-23 82.5 0.3 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 AJD70923.1 - 3.8e-11 43.1 0.0 3.5e-10 40.0 0.0 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AJD70923.1 - 4.4e-06 26.5 0.0 8.4e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Gln-synt_N_2 PF16952.5 AJD70923.1 - 0.0061 16.4 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain TrkA_N PF02254.18 AJD70923.1 - 0.086 13.1 0.0 0.52 10.6 0.0 2.1 1 1 0 1 1 1 0 TrkA-N domain Epimerase PF01370.21 AJD70923.1 - 0.16 11.4 0.2 0.24 10.8 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family LysR_substrate PF03466.20 AJD70924.1 - 1.2e-39 135.8 11.5 1.9e-39 135.2 11.5 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AJD70924.1 - 2.7e-14 52.8 3.5 7.1e-14 51.5 3.5 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GST_N_3 PF13417.6 AJD70926.1 - 2.3e-14 53.5 0.0 4.4e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AJD70926.1 - 2.7e-12 46.8 0.0 5.4e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AJD70926.1 - 7.5e-10 39.0 0.0 1.2e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AJD70926.1 - 3e-06 27.2 1.7 3.6e-06 26.9 0.3 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AJD70926.1 - 0.0039 17.3 0.0 0.0067 16.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AJD70926.1 - 0.0066 16.6 0.0 0.0098 16.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain DUF3341 PF11821.8 AJD70927.1 - 0.95 9.1 0.1 0.95 9.1 0.1 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3341) DUF4191 PF13829.6 AJD70927.1 - 9.6 5.5 8.1 5.3 6.3 1.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) AA_permease_2 PF13520.6 AJD70928.1 - 3.9e-54 184.1 43.2 4.7e-54 183.8 43.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AJD70928.1 - 3.4e-39 134.8 37.4 4.1e-39 134.5 37.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 AJD70928.1 - 0.00032 20.7 1.3 0.00032 20.7 1.3 5.1 6 0 0 6 6 6 1 C-terminus of AA_permease Trp_Tyr_perm PF03222.13 AJD70928.1 - 0.13 11.3 27.8 0.69 8.9 27.8 2.3 1 1 0 1 1 1 0 Tryptophan/tyrosine permease family YrzO PF14142.6 AJD70928.1 - 1.1 9.2 4.9 5.3 7.0 3.4 2.5 2 0 0 2 2 2 0 YrzO-like protein Glyco_hydro_92 PF07971.12 AJD70929.1 - 5.6e-141 470.6 1.4 6.8e-141 470.3 1.4 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 Glyco_hydro_92N PF17678.1 AJD70929.1 - 8.2e-53 179.7 0.6 1.3e-52 179.1 0.6 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 92 N-terminal domain DUF2628 PF10947.8 AJD70930.1 - 2.2e-19 69.6 0.4 2.9e-19 69.2 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2628) GGDEF PF00990.21 AJD70931.1 - 4.7e-25 88.2 0.0 1.3e-24 86.8 0.0 1.8 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 AJD70931.1 - 5.5e-14 52.4 3.0 2.4e-09 37.4 0.2 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 AJD70931.1 - 2.3e-07 31.0 0.0 0.00067 19.9 0.0 2.9 2 1 0 3 3 3 2 PAS domain GAF PF01590.26 AJD70931.1 - 3.1e-07 31.1 0.2 1.3e-06 29.1 0.2 2.2 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 AJD70931.1 - 2.1e-05 24.5 0.0 6.2e-05 23.0 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 AJD70931.1 - 9.4e-05 22.6 0.0 0.18 12.1 0.0 2.6 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.6 AJD70931.1 - 0.00023 21.5 0.1 0.00047 20.5 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 AJD70931.1 - 0.00028 21.2 0.8 0.0011 19.3 0.4 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 AJD70931.1 - 0.01 15.8 0.0 0.069 13.2 0.0 2.5 2 0 0 2 2 2 0 PAS domain NOD2_WH PF17779.1 AJD70931.1 - 0.19 12.1 0.1 0.42 11.0 0.1 1.6 1 0 0 1 1 1 0 NOD2 winged helix domain Diacid_rec PF05651.13 AJD70932.1 - 1.1e-43 148.2 0.1 1.6e-43 147.6 0.1 1.3 1 0 0 1 1 1 1 Putative sugar diacid recognition HTH_30 PF13556.6 AJD70932.1 - 4.3e-22 77.7 0.1 1.3e-21 76.1 0.1 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GGDEF_2 PF17853.1 AJD70932.1 - 8.6e-14 51.8 1.9 8.6e-14 51.8 1.9 2.2 3 0 0 3 3 3 1 GGDEF-like domain HTH_8 PF02954.19 AJD70932.1 - 0.00013 21.7 0.2 0.00045 19.9 0.2 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family GAF_2 PF13185.6 AJD70932.1 - 0.023 15.0 0.3 0.07 13.4 0.1 2.0 2 0 0 2 2 2 0 GAF domain HTH_23 PF13384.6 AJD70932.1 - 0.055 13.3 0.1 0.23 11.3 0.1 2.1 1 0 0 1 1 1 0 Homeodomain-like domain SpoVT_C PF15714.5 AJD70932.1 - 0.13 12.3 0.1 0.81 9.7 0.1 2.0 1 1 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor sCache_3_2 PF17203.4 AJD70932.1 - 0.16 12.1 1.7 0.67 10.1 0.2 2.4 2 0 0 2 2 2 0 Single cache domain 3 Gly_kinase PF02595.15 AJD70933.1 - 3.6e-149 496.7 12.8 4e-149 496.6 12.8 1.0 1 0 0 1 1 1 1 Glycerate kinase family MFS_1 PF07690.16 AJD70934.1 - 4.1e-44 151.0 56.3 1.8e-35 122.5 28.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.8 AJD70934.1 - 0.0018 17.0 0.1 0.0018 17.0 0.1 3.7 5 0 0 5 5 5 2 Vacuole effluxer Atg22 like MFS_4 PF06779.14 AJD70934.1 - 0.014 14.7 34.6 2.6 7.2 34.6 2.1 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Nuc_H_symport PF03825.16 AJD70934.1 - 0.21 10.6 16.1 0.052 12.5 0.3 3.1 2 1 1 3 3 3 0 Nucleoside H+ symporter MFS_1_like PF12832.7 AJD70934.1 - 1.1 8.0 16.9 2 7.1 10.3 3.0 3 0 0 3 3 3 0 MFS_1 like family Peptidase_M19 PF01244.21 AJD70935.1 - 5.3e-102 341.2 0.0 6.2e-102 341.0 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Methyltrans_SAM PF10672.9 AJD70937.1 - 1.4e-18 67.1 0.0 1.9e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase PUA_3 PF17785.1 AJD70937.1 - 6.6e-17 61.1 0.1 1.5e-16 60.0 0.1 1.6 1 0 0 1 1 1 1 PUA-like domain Methyltransf_31 PF13847.6 AJD70937.1 - 3.4e-14 52.9 0.0 5.9e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AJD70937.1 - 1.7e-12 47.9 0.0 3.8e-12 46.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 AJD70937.1 - 3.6e-11 43.0 0.0 6.1e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 AJD70937.1 - 2.5e-10 40.3 0.0 4.1e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 AJD70937.1 - 1.6e-09 38.1 0.0 2.3e-09 37.6 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 AJD70937.1 - 1.7e-07 31.8 0.1 6.1e-07 30.0 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AJD70937.1 - 1e-06 28.4 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 AJD70937.1 - 2.3e-06 27.6 0.0 4.8e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 AJD70937.1 - 4.8e-05 23.0 0.0 8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 AJD70937.1 - 0.0001 22.1 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 AJD70937.1 - 0.00018 22.2 0.0 0.00036 21.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AJD70937.1 - 0.0022 17.4 0.2 0.0061 15.9 0.1 1.9 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 AJD70937.1 - 0.0075 15.9 0.0 0.055 13.1 0.0 2.1 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_16 PF10294.9 AJD70937.1 - 0.036 13.8 0.0 0.1 12.3 0.0 1.6 1 1 0 1 1 1 0 Lysine methyltransferase N6_Mtase PF02384.16 AJD70937.1 - 0.072 12.3 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_18 PF12847.7 AJD70937.1 - 0.077 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.11 AJD70937.1 - 0.094 11.6 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF43 PF01861.16 AJD70937.1 - 0.1 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain UPF0020 PF01170.18 AJD70937.1 - 0.14 11.8 0.1 0.77 9.4 0.1 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Spermine_synth PF01564.17 AJD70937.1 - 0.17 11.3 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Spermine/spermidine synthase domain CMAS PF02353.20 AJD70937.1 - 0.17 11.1 0.0 0.31 10.3 0.0 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase TerC PF03741.16 AJD70938.1 - 1e-54 185.0 13.0 1e-54 185.0 13.0 2.2 3 0 0 3 3 3 1 Integral membrane protein TerC family EIAV_GP90 PF00971.18 AJD70938.1 - 0.097 11.3 0.9 0.13 10.9 0.9 1.1 1 0 0 1 1 1 0 EIAV coat protein, gp90 Rhomboid PF01694.22 AJD70939.1 - 1.6e-18 67.2 10.4 1.6e-18 67.2 10.4 1.5 2 0 0 2 2 2 1 Rhomboid family GDPD PF03009.17 AJD70940.1 - 3.2e-47 161.5 0.0 3.7e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family TonB_dep_Rec PF00593.24 AJD70941.1 - 5.1e-38 132.1 29.7 5.1e-38 132.1 29.7 2.1 1 1 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 AJD70941.1 - 1.9e-13 50.9 2.2 5.4e-13 49.5 2.2 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AJD70941.1 - 6.9e-12 45.0 1.3 1.3e-11 44.2 1.3 1.3 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family MOSP_C PF02722.15 AJD70941.1 - 0.0042 16.8 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 Major Outer Sheath Protein C-terminal domain PAP2 PF01569.21 AJD70942.1 - 7.6e-18 64.6 0.5 1.2e-17 63.9 0.0 1.5 2 0 0 2 2 2 1 PAP2 superfamily MnmE_helical PF12631.7 AJD70943.1 - 1.7e-48 165.6 3.1 2.1e-48 165.2 3.1 1.1 1 0 0 1 1 1 1 MnmE helical domain TrmE_N PF10396.9 AJD70943.1 - 9.9e-38 129.0 0.7 3e-37 127.5 0.0 2.1 3 0 0 3 3 3 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.23 AJD70943.1 - 2.2e-23 82.5 0.0 4e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AJD70943.1 - 4.4e-09 36.0 0.0 1.6e-08 34.3 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 AJD70943.1 - 1.9e-05 24.8 0.0 0.0033 17.5 0.0 2.3 1 1 1 2 2 2 1 Dynamin family RsgA_GTPase PF03193.16 AJD70943.1 - 0.00049 20.0 0.0 0.0016 18.4 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AIG1 PF04548.16 AJD70943.1 - 0.0041 16.5 0.0 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 AIG1 family MCM PF00493.23 AJD70943.1 - 0.0065 15.6 0.1 0.026 13.6 0.0 2.0 3 0 0 3 3 3 1 MCM P-loop domain ABC_tran PF00005.27 AJD70943.1 - 0.017 15.6 0.0 0.032 14.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.6 AJD70943.1 - 0.04 14.2 0.0 0.04 14.2 0.0 2.8 3 1 0 3 3 3 0 AAA domain AAA_21 PF13304.6 AJD70943.1 - 0.11 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Ras PF00071.22 AJD70943.1 - 0.15 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Ras family AAA_16 PF13191.6 AJD70943.1 - 0.22 11.9 13.9 0.065 13.6 6.8 2.9 2 1 0 2 2 2 0 AAA ATPase domain Polysacc_deac_1 PF01522.21 AJD70944.1 - 1.4e-25 89.6 0.0 4.8e-25 87.8 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide deacetylase Peptidase_C14 PF00656.22 AJD70944.1 - 1e-21 78.0 0.0 2.2e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 Caspase domain TPR_2 PF07719.17 AJD70944.1 - 6.5e-17 60.2 12.4 3.4e-05 23.6 1.1 3.9 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 AJD70944.1 - 2.2e-14 52.5 9.8 3.3e-05 23.5 1.1 3.5 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 AJD70944.1 - 1.8e-13 50.9 15.0 4.5e-08 33.6 4.1 4.3 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 AJD70944.1 - 1.1e-12 47.4 7.6 1.5e-07 30.9 1.7 2.9 1 1 2 3 3 3 3 TPR repeat TPR_12 PF13424.6 AJD70944.1 - 1.4e-10 41.3 11.3 3e-09 37.0 1.2 3.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 AJD70944.1 - 1.4e-09 38.4 6.0 4.8e-06 27.0 1.0 3.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 AJD70944.1 - 1.5e-09 37.6 0.7 0.0011 19.2 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 AJD70944.1 - 2.1e-08 34.2 5.7 2.4e-07 30.8 0.8 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 AJD70944.1 - 6.5e-08 32.2 4.7 8.7e-05 22.4 0.5 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 AJD70944.1 - 1.2e-06 28.2 9.5 7.6e-05 22.4 0.1 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 AJD70944.1 - 0.00015 21.5 3.1 0.029 14.4 0.1 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat Peptidase_C13 PF01650.18 AJD70944.1 - 0.00025 20.6 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase C13 family TPR_14 PF13428.6 AJD70944.1 - 0.00026 21.6 1.8 0.031 15.1 0.0 5.5 3 1 2 5 5 3 3 Tetratricopeptide repeat TPR_4 PF07721.14 AJD70944.1 - 0.00095 19.6 16.3 0.023 15.3 0.1 5.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 AJD70944.1 - 0.0023 18.5 0.6 0.0023 18.5 0.6 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat RPN7 PF10602.9 AJD70944.1 - 0.017 14.9 0.6 0.099 12.3 0.1 2.3 1 1 0 2 2 2 0 26S proteasome subunit RPN7 Fis1_TPR_C PF14853.6 AJD70944.1 - 0.037 14.1 2.3 5.4 7.2 0.0 3.1 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 AJD70944.1 - 0.48 10.8 9.0 0.16 12.4 4.2 2.5 2 0 0 2 2 2 0 Bacterial transcriptional activator domain TPR_21 PF09976.9 AJD70944.1 - 0.55 9.9 10.9 0.092 12.5 5.2 2.4 1 1 0 2 2 2 0 Tetratricopeptide repeat-like domain YidC_periplas PF14849.6 AJD70945.1 - 3.4e-64 217.5 0.0 4.3e-64 217.1 0.0 1.1 1 0 0 1 1 1 1 YidC periplasmic domain 60KD_IMP PF02096.20 AJD70945.1 - 2.7e-55 186.8 4.1 4.8e-55 186.0 4.1 1.4 1 0 0 1 1 1 1 60Kd inner membrane protein Wzy_C PF04932.15 AJD70945.1 - 0.067 12.8 0.3 0.16 11.6 0.3 1.6 1 0 0 1 1 1 0 O-Antigen ligase Ribonuclease_P PF00825.18 AJD70946.1 - 1.7e-15 57.0 0.3 2e-15 56.8 0.3 1.0 1 0 0 1 1 1 1 Ribonuclease P HupF_HypC PF01455.18 AJD70946.1 - 0.12 12.5 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 HupF/HypC family RNase_E_G PF10150.9 AJD70946.1 - 0.16 11.4 0.0 0.16 11.4 0.0 1.0 1 0 0 1 1 1 0 Ribonuclease E/G family Ribosomal_L34 PF00468.17 AJD70947.1 - 5.4e-25 87.1 8.5 5.9e-25 87.0 8.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Xanthomonas_citri_subsp._citri_A306-ASM81688v1/GCA_000816885.1_ASM81688v1_protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Xanthomonas_citri_subsp._citri_A306-ASM81688v1/GCA_000816885.1_ASM81688v1_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Xanthomonas_citri_subsp._citri_A306-ASM81688v1/GCA_000816885.1_ASM81688v1_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Xanthomonas_citri_subsp._citri_A306-ASM81688v1/GCA_000816885.1_ASM81688v1_protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 04:44:48 2019 # [ok]