# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Mob_Pre PF01076.19 ABA77571.1 - 5.9e-09 36.0 0.0 5.2e-08 32.9 0.0 2.2 1 1 0 1 1 1 1 Plasmid recombination enzyme FixQ PF05545.11 ABA77572.1 - 1.9 8.5 5.3 16 5.6 1.7 3.4 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DMSP_lyase PF16867.5 ABA77574.1 - 1.4e-37 128.9 0.0 1.7e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_7 PF12973.7 ABA77574.1 - 3.7e-05 23.6 0.0 5.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain ADH_zinc_N PF00107.26 ABA77575.1 - 3.9e-12 46.3 0.9 7.6e-12 45.3 0.9 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA77575.1 - 1.7e-06 27.9 0.0 7.7e-06 25.8 0.0 2.1 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain DNA_processg_A PF02481.15 ABA77575.1 - 0.015 14.5 2.4 0.38 9.9 0.6 2.1 2 0 0 2 2 2 0 DNA recombination-mediator protein A Epimerase PF01370.21 ABA77575.1 - 0.017 14.6 0.3 0.024 14.1 0.3 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family KR PF08659.10 ABA77575.1 - 0.018 15.0 0.3 0.026 14.4 0.3 1.3 1 0 0 1 1 1 0 KR domain ADH_N_2 PF16884.5 ABA77575.1 - 0.022 14.7 0.1 0.097 12.6 0.1 2.0 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase NAD_binding_10 PF13460.6 ABA77575.1 - 0.12 12.3 1.1 0.22 11.4 1.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 ABA77575.1 - 0.17 11.2 0.1 0.23 10.8 0.1 1.1 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase DapB_N PF01113.20 ABA77575.1 - 0.33 11.1 2.2 6.3 6.9 0.3 2.5 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus TetR_C_13 PF16925.5 ABA77576.1 - 2e-44 150.2 0.0 2.9e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 ABA77576.1 - 8.8e-13 47.8 0.9 1.5e-12 47.1 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 ABA77576.1 - 3.8e-05 24.0 2.2 0.00014 22.1 1.6 2.1 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 ABA77576.1 - 0.025 14.9 0.0 0.081 13.2 0.0 1.9 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ABC_tran PF00005.27 ABA77577.1 - 3.3e-41 141.0 0.0 6.3e-21 75.3 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA77577.1 - 5.2e-21 75.7 5.5 0.00056 19.8 0.0 4.2 2 2 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA77577.1 - 2e-15 56.8 0.2 0.00028 20.4 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA77577.1 - 1e-08 36.0 5.7 0.0011 19.5 0.1 2.7 3 0 0 3 3 3 2 AAA domain AAA_29 PF13555.6 ABA77577.1 - 3.9e-07 29.7 1.6 0.023 14.5 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 ABA77577.1 - 1.1e-05 25.5 0.0 0.061 13.4 0.0 2.4 2 0 0 2 2 2 2 50S ribosome-binding GTPase SbcCD_C PF13558.6 ABA77577.1 - 2.4e-05 24.5 0.8 0.22 11.8 0.3 3.4 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 ABA77577.1 - 4.4e-05 23.4 0.7 0.11 12.2 0.1 2.3 2 0 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 ABA77577.1 - 5e-05 23.3 0.0 0.0093 15.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 ABA77577.1 - 5e-05 23.3 0.1 0.15 12.0 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA_16 PF13191.6 ABA77577.1 - 0.00013 22.4 11.9 0.00062 20.2 0.1 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 ABA77577.1 - 0.00018 22.0 0.0 0.076 13.6 0.0 3.3 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 ABA77577.1 - 0.00027 20.3 6.6 0.016 14.5 0.1 3.2 3 1 0 3 3 3 2 Zeta toxin T2SSE PF00437.20 ABA77577.1 - 0.0006 18.9 0.6 0.0082 15.2 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.6 ABA77577.1 - 0.00098 19.3 0.3 1.4 9.1 0.0 3.4 3 1 0 3 3 3 1 AAA domain cobW PF02492.19 ABA77577.1 - 0.0011 18.6 0.6 0.1 12.2 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 ABA77577.1 - 0.0026 17.5 0.2 0.24 11.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 ABA77577.1 - 0.0031 17.1 2.2 1.7 8.2 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 ABA77577.1 - 0.004 16.9 5.4 0.049 13.4 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 ABA77577.1 - 0.004 17.6 0.0 0.16 12.4 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 ABA77577.1 - 0.0044 17.0 0.7 0.31 10.9 0.2 2.3 2 0 0 2 2 2 1 NTPase Mg_chelatase PF01078.21 ABA77577.1 - 0.0077 15.6 0.3 0.058 12.8 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 ABA77577.1 - 0.011 16.1 0.1 1.7 9.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase ABC_tran_Xtn PF12848.7 ABA77577.1 - 0.017 15.1 1.6 0.051 13.6 1.6 1.8 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 ABA77577.1 - 0.028 13.6 0.4 2.6 7.2 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_22 PF13401.6 ABA77577.1 - 0.034 14.4 3.6 0.41 10.9 0.1 2.9 3 1 0 3 3 2 0 AAA domain FtsK_SpoIIIE PF01580.18 ABA77577.1 - 0.047 13.0 0.1 2 7.7 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_14 PF13173.6 ABA77577.1 - 0.051 13.6 0.0 1.6 8.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 ABA77577.1 - 0.058 13.3 0.6 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 ABA77577.1 - 0.059 13.6 3.7 0.36 11.0 0.2 3.0 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 ABA77577.1 - 0.083 12.5 3.1 2.9 7.4 0.0 3.4 4 0 0 4 4 4 0 AAA domain DUF87 PF01935.17 ABA77577.1 - 0.13 12.3 0.0 18 5.3 0.0 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain DAP3 PF10236.9 ABA77577.1 - 0.13 11.4 0.3 0.98 8.5 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MobB PF03205.14 ABA77577.1 - 0.15 12.0 0.3 3.6 7.5 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Roc PF08477.13 ABA77577.1 - 0.15 12.3 0.1 4.4 7.5 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SRP54 PF00448.22 ABA77577.1 - 0.17 11.5 0.1 2.7 7.6 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 ABA77577.1 - 0.2 11.4 0.1 1.5 8.6 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.6 ABA77577.1 - 0.25 9.9 4.9 2.5 6.6 0.0 2.8 3 0 0 3 3 3 0 AAA domain dNK PF01712.19 ABA77577.1 - 0.27 11.1 0.6 1.8 8.4 0.2 2.0 2 0 0 2 2 2 0 Deoxynucleoside kinase DUF3584 PF12128.8 ABA77577.1 - 0.6 7.6 13.3 1 6.8 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 ABA77578.1 - 7.3e-26 91.3 0.0 1e-25 90.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA77578.1 - 1.1e-07 31.6 0.1 0.003 17.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA77578.1 - 2.5e-06 27.5 0.0 0.00027 20.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 ABA77578.1 - 8.9e-05 21.5 0.8 0.031 13.1 0.0 2.6 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 ABA77578.1 - 0.0002 21.8 0.2 0.00031 21.2 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA77578.1 - 0.00056 19.6 0.1 0.0012 18.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 ABA77578.1 - 0.0011 18.8 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 ABA77578.1 - 0.0024 17.6 1.0 0.0094 15.7 0.7 2.0 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 ABA77578.1 - 0.0025 18.3 0.0 0.033 14.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA77578.1 - 0.0039 17.7 0.0 0.0059 17.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 ABA77578.1 - 0.0089 14.7 0.0 2.2 6.8 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 ABA77578.1 - 0.011 16.0 0.0 0.024 14.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA77578.1 - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 ABA77578.1 - 0.023 14.3 0.3 0.063 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA77578.1 - 0.024 14.5 0.5 0.046 13.6 0.2 1.6 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 ABA77578.1 - 0.034 14.1 0.3 0.66 10.0 0.0 2.7 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 ABA77578.1 - 0.034 14.3 0.4 0.076 13.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 ABA77578.1 - 0.06 12.3 0.1 0.14 11.1 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 ABA77578.1 - 0.098 12.6 0.0 2.8 7.8 0.0 2.2 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.23 ABA77578.1 - 0.11 12.5 0.1 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 ABA77578.1 - 0.18 12.2 0.0 0.62 10.5 0.0 1.8 2 0 0 2 2 2 0 RNA helicase FecCD PF01032.18 ABA77579.1 - 7e-124 412.9 90.8 1e-64 218.5 42.5 2.4 2 1 1 3 3 3 2 FecCD transport family Peripla_BP_2 PF01497.18 ABA77580.1 - 3.9e-13 49.5 0.0 5.9e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TonB_dep_Rec PF00593.24 ABA77581.1 - 3.9e-61 208.3 22.5 3.9e-61 208.3 22.5 1.8 2 1 0 2 2 2 1 TonB dependent receptor Plug PF07715.15 ABA77581.1 - 3.8e-19 69.2 0.4 9e-19 68.0 0.4 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl PF13505.6 ABA77581.1 - 2.8 8.1 24.6 0.23 11.6 6.4 4.1 2 1 2 4 4 4 0 Outer membrane protein beta-barrel domain ROK PF00480.20 ABA77582.1 - 9.1e-29 100.8 0.0 1.5e-28 100.2 0.0 1.3 1 1 0 1 1 1 1 ROK family HTH_20 PF12840.7 ABA77582.1 - 9.7e-07 28.8 1.2 2.1e-06 27.7 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA77582.1 - 3e-06 27.0 0.3 8.6e-06 25.6 0.3 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 ABA77582.1 - 2e-05 24.4 0.0 7.6e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 ABA77582.1 - 5.1e-05 22.8 0.0 8.5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 ABA77582.1 - 0.004 16.9 0.3 0.004 16.9 0.3 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA77582.1 - 0.0042 17.0 0.0 0.0095 15.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 ABA77582.1 - 0.0091 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 ABA77582.1 - 0.013 15.4 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 ABA77582.1 - 0.036 13.9 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.6 ABA77582.1 - 0.085 13.4 0.0 0.22 12.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 ABA77582.1 - 0.14 12.6 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.6 ABA77582.1 - 0.2 11.5 1.5 1 9.2 0.2 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain SBP_bac_8 PF13416.6 ABA77583.1 - 6.1e-25 88.6 3.6 8.6e-25 88.1 3.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA77583.1 - 3.8e-21 76.4 4.4 5.8e-21 75.8 4.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA77584.2 - 1.6e-12 47.6 25.5 1.6e-12 47.6 25.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3377 PF11857.8 ABA77584.2 - 8.6 6.4 7.5 2 8.4 0.1 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF3377) BPD_transp_1 PF00528.22 ABA77585.1 - 1.5e-17 63.9 17.6 1.5e-17 63.9 17.6 2.6 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA77586.1 - 2e-34 119.1 0.0 3.6e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 ABA77586.1 - 5.7e-10 39.9 0.0 2.3e-09 37.9 0.0 2.1 2 0 0 2 2 1 1 MalK OB fold domain TOBE_2 PF08402.10 ABA77586.1 - 1.7e-08 34.5 1.0 5.1e-08 33.0 1.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 ABA77586.1 - 1.8e-08 34.6 0.1 0.0049 16.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA77586.1 - 7.5e-05 22.7 0.0 0.00017 21.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 ABA77586.1 - 0.00013 21.4 0.0 0.00077 19.0 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 ABA77586.1 - 0.00019 21.6 3.6 0.0022 18.3 0.7 2.6 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.6 ABA77586.1 - 0.00097 19.6 0.9 0.0031 17.9 0.2 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 ABA77586.1 - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 ABA77586.1 - 0.0014 19.1 0.0 0.0023 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA77586.1 - 0.0029 17.3 0.1 0.0061 16.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 ABA77586.1 - 0.0031 16.9 0.0 0.0072 15.7 0.0 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 ABA77586.1 - 0.0037 17.5 0.5 0.017 15.4 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 ABA77586.1 - 0.01 16.0 0.1 0.023 14.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 ABA77586.1 - 0.012 15.8 0.4 0.065 13.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 ABA77586.1 - 0.026 14.6 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 ABA77586.1 - 0.036 13.6 0.1 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA77586.1 - 0.037 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 ABA77586.1 - 0.073 13.5 0.0 0.56 10.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PIF1 PF05970.14 ABA77586.1 - 0.083 12.0 0.0 9 5.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_7 PF12775.7 ABA77586.1 - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 ABA77586.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 ABA77586.1 - 0.12 12.0 0.0 0.67 9.5 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 ABA77586.1 - 0.12 12.2 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 ABA77586.1 - 0.14 12.5 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MIT_C PF16565.5 ABA77586.1 - 0.14 12.1 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT PduV-EutP PF10662.9 ABA77586.1 - 0.15 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.6 ABA77586.1 - 0.17 11.6 3.0 0.51 10.0 0.0 2.7 3 1 0 3 3 3 0 AAA domain G-alpha PF00503.20 ABA77586.1 - 0.19 10.8 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 ABA77586.1 - 0.24 10.6 0.0 0.37 9.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.6 ABA77586.1 - 0.3 11.3 2.8 14 6.0 0.2 4.0 5 1 0 5 5 3 0 Putative exonuclease SbcCD, C subunit BcrAD_BadFG PF01869.20 ABA77587.1 - 1.1e-12 48.0 0.3 2.4e-12 46.9 0.3 1.5 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 ABA77587.1 - 0.0022 17.5 0.1 0.76 9.2 0.1 2.5 3 0 0 3 3 3 2 ROK family FtsA PF14450.6 ABA77587.1 - 0.079 13.4 0.0 0.42 11.0 0.0 2.2 1 1 0 1 1 1 0 Cell division protein FtsA DUF3236 PF11576.8 ABA77587.1 - 0.13 12.0 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) SIS PF01380.22 ABA77588.1 - 1.6e-08 34.5 0.2 0.0031 17.4 0.0 2.5 2 1 0 2 2 2 2 SIS domain Beta_elim_lyase PF01212.21 ABA77589.1 - 2.8e-86 289.4 0.1 3.6e-86 289.1 0.1 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 ABA77589.1 - 5.5e-10 38.9 0.0 7.3e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 ABA77589.1 - 0.24 9.9 0.0 0.52 8.8 0.0 1.4 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DeoRC PF00455.22 ABA77590.1 - 1.3e-40 138.9 0.0 1.9e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 ABA77590.1 - 3.7e-16 58.6 0.6 1.9e-15 56.4 0.8 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.21 ABA77590.1 - 5.6e-06 25.9 0.6 1.1e-05 25.0 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 ABA77590.1 - 9.6e-06 25.5 0.0 1.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 ABA77590.1 - 0.0003 20.7 0.1 0.00081 19.3 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 ABA77590.1 - 0.0088 15.5 0.4 0.098 12.2 0.2 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.6 ABA77590.1 - 0.011 15.8 0.1 0.031 14.3 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn helix DUF977 PF06163.11 ABA77590.1 - 0.02 14.8 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_IclR PF09339.10 ABA77590.1 - 0.026 14.3 0.8 0.14 12.0 0.3 2.5 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_23 PF13384.6 ABA77590.1 - 0.065 13.1 0.2 0.16 11.8 0.2 1.7 1 0 0 1 1 1 0 Homeodomain-like domain PaaX PF07848.12 ABA77590.1 - 0.069 13.4 0.9 4.6 7.5 0.1 2.5 2 0 0 2 2 2 0 PaaX-like protein Put_DNA-bind_N PF06971.13 ABA77590.1 - 0.13 12.3 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_20 PF12840.7 ABA77590.1 - 0.22 11.6 1.6 1.1 9.3 0.3 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain DUF5585 PF17823.1 ABA77590.1 - 0.24 10.3 0.6 0.32 9.9 0.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5585) Inositol_P PF00459.25 ABA77591.1 - 1.1e-42 146.5 0.0 1.3e-42 146.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family SBP_bac_5 PF00496.22 ABA77592.1 - 1e-66 225.5 0.0 1.2e-66 225.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 ABA77592.1 - 0.088 12.7 2.7 0.17 11.8 2.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SpoU_methylas_C PF12105.8 ABA77592.1 - 0.095 12.4 0.3 1.9 8.3 0.2 2.5 1 1 1 2 2 2 0 SpoU, rRNA methylase, C-terminal BPD_transp_1 PF00528.22 ABA77593.1 - 1.2e-35 122.9 16.7 1.2e-35 122.9 16.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA77594.1 - 2.1e-24 86.3 14.9 2.1e-24 86.3 14.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MRAP PF15183.6 ABA77594.1 - 0.087 12.8 0.2 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family OppC_N PF12911.7 ABA77594.1 - 0.25 11.3 0.2 0.25 11.3 0.2 2.9 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 ABA77595.1 - 1.3e-46 158.5 0.0 8.6e-26 91.1 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 ABA77595.1 - 1.6e-17 63.8 1.3 2.2e-13 50.5 1.1 2.8 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 ABA77595.1 - 7.1e-09 36.1 1.4 0.0018 18.5 0.0 3.7 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 ABA77595.1 - 3.4e-07 30.8 0.3 0.024 15.0 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 ABA77595.1 - 6.4e-06 26.2 0.3 0.91 9.3 0.0 3.7 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA77595.1 - 8.3e-06 25.4 0.8 0.26 10.7 0.0 3.9 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 ABA77595.1 - 2.5e-05 24.1 0.1 2.6 7.7 0.0 4.0 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_29 PF13555.6 ABA77595.1 - 7.6e-05 22.4 0.1 0.3 10.9 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA PF00004.29 ABA77595.1 - 0.00035 21.0 0.1 0.77 10.2 0.0 3.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 ABA77595.1 - 0.00082 19.5 0.1 1.5 8.8 0.0 2.3 2 0 0 2 2 2 2 Helicase HerA, central domain NACHT PF05729.12 ABA77595.1 - 0.0009 19.2 1.0 0.53 10.2 0.0 2.9 3 0 0 3 3 2 1 NACHT domain AAA_23 PF13476.6 ABA77595.1 - 0.003 18.1 0.0 2.6 8.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 ABA77595.1 - 0.0034 17.3 0.0 0.44 10.4 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 ABA77595.1 - 0.0038 17.3 0.2 0.12 12.5 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.22 ABA77595.1 - 0.0054 17.1 0.1 2.9 8.3 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_18 PF13238.6 ABA77595.1 - 0.008 16.7 0.1 2.8 8.5 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 ABA77595.1 - 0.0084 16.1 0.4 5.4 7.0 0.1 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 ABA77595.1 - 0.011 16.0 0.1 0.88 9.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 ABA77595.1 - 0.012 15.3 0.1 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 ABA77595.1 - 0.015 14.7 0.0 0.6 9.4 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 ABA77595.1 - 0.021 15.0 0.7 1.3 9.2 0.0 3.0 3 0 0 3 3 3 0 AAA domain PduV-EutP PF10662.9 ABA77595.1 - 0.032 14.0 0.4 7 6.4 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 ABA77595.1 - 0.035 13.3 0.1 1.3 8.2 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain PhoH PF02562.16 ABA77595.1 - 0.073 12.5 0.1 0.31 10.5 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein FtsK_SpoIIIE PF01580.18 ABA77595.1 - 0.077 12.3 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 ABA77595.1 - 0.077 12.6 0.8 7.5 6.1 0.0 3.3 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.12 ABA77595.1 - 0.082 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 ABA77595.1 - 0.15 11.1 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.26 ABA77595.1 - 0.17 11.6 0.3 14 5.3 0.0 2.6 3 0 0 3 3 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 ABA77595.1 - 0.19 11.2 0.0 21 4.6 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region MobB PF03205.14 ABA77595.1 - 0.21 11.5 0.0 12 5.8 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Adeno_IVa2 PF02456.15 ABA77595.1 - 0.27 10.0 0.0 14 4.3 0.0 2.3 2 0 0 2 2 2 0 Adenovirus IVa2 protein Peptidase_M20 PF01546.28 ABA77596.1 - 2.7e-23 82.8 0.0 3.8e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 ABA77596.1 - 4.4e-05 23.3 0.0 7.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 ABA77596.1 - 0.0021 18.0 0.0 0.0072 16.2 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain APH PF01636.23 ABA77597.1 - 4.6e-11 43.1 4.9 7.4e-11 42.4 4.9 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 ABA77597.1 - 6.7e-05 22.6 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Choline/ethanolamine kinase Halo_GVPC PF05465.13 ABA77597.1 - 0.03 14.6 3.3 0.092 13.0 3.3 1.9 1 1 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat Choline_kinase PF01633.20 ABA77598.1 - 3.6e-20 72.5 0.0 6.1e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase APH PF01636.23 ABA77598.1 - 1e-15 58.3 0.0 1.6e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF2188 PF09954.9 ABA77598.1 - 0.046 13.9 1.2 0.082 13.1 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) IMS PF00817.20 ABA77599.1 - 5.3e-09 36.2 0.0 9.4e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family Inhibitor_I78 PF11720.8 ABA77600.1 - 7.4e-30 102.8 0.3 9.3e-30 102.5 0.3 1.1 1 0 0 1 1 1 1 Peptidase inhibitor I78 family LPAM_2 PF13627.6 ABA77600.1 - 0.00068 19.4 4.4 0.00068 19.4 4.4 1.7 2 0 0 2 2 2 1 Prokaryotic lipoprotein-attachment site potato_inhibit PF00280.18 ABA77600.1 - 0.0063 17.2 0.2 0.01 16.5 0.2 1.4 1 1 0 1 1 1 1 Potato inhibitor I family LPAM_1 PF08139.12 ABA77600.1 - 0.13 12.8 3.7 0.26 11.9 3.7 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site NYN PF01936.18 ABA77601.1 - 4.1e-29 102.0 0.0 8e-29 101.0 0.0 1.4 2 0 0 2 2 2 1 NYN domain OST-HTH PF12872.7 ABA77601.1 - 4.6e-14 52.0 0.0 7.7e-14 51.3 0.0 1.3 1 0 0 1 1 1 1 OST-HTH/LOTUS domain PIN7 PF18475.1 ABA77601.1 - 0.014 16.0 0.0 0.025 15.2 0.0 1.4 1 1 0 1 1 1 0 PIN domain DUF4170 PF13773.6 ABA77602.1 - 3.1e-35 120.1 0.2 3.6e-35 119.9 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4170) Glycos_transf_N PF04413.16 ABA77603.1 - 1e-18 67.6 0.0 2.5e-18 66.4 0.0 1.6 1 1 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LpxK PF02606.14 ABA77604.1 - 1.4e-88 297.2 0.0 1.6e-88 296.9 0.0 1.0 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase Glyco_transf_4 PF13439.6 ABA77604.1 - 0.0083 16.1 1.0 0.019 15.0 0.2 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 CbiA PF01656.23 ABA77604.1 - 0.083 13.0 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CoA_transf_3 PF02515.17 ABA77605.1 - 7.4e-135 449.8 3.0 8.3e-135 449.6 3.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Thioredoxin_4 PF13462.6 ABA77606.1 - 7.3e-51 172.6 0.3 9.4e-51 172.3 0.3 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 ABA77606.1 - 1.7e-08 34.5 0.9 0.0046 16.8 0.1 2.4 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 ABA77606.1 - 0.16 12.0 0.0 4.5 7.4 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin domain DciA PF05258.12 ABA77607.1 - 1.2e-16 60.8 0.0 2.2e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Dna[CI] antecedent, DciA NUDIX_4 PF14815.6 ABA77608.1 - 4e-21 75.1 0.1 8e-21 74.1 0.1 1.5 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.25 ABA77608.1 - 2.4e-17 63.3 0.0 3.7e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 ABA77608.1 - 2.4e-08 33.4 0.0 5.2e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 ABA77608.1 - 0.0072 16.6 9.4 0.013 15.8 9.4 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 ABA77608.1 - 0.023 15.3 0.0 0.15 12.7 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain FA_desaturase PF00487.24 ABA77609.1 - 1.9e-26 93.5 12.1 1.9e-26 93.5 12.1 2.2 1 1 1 2 2 2 1 Fatty acid desaturase N6_N4_Mtase PF01555.18 ABA77610.1 - 1.1e-57 195.4 0.0 1.5e-57 194.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase RAMA PF18755.1 ABA77610.1 - 1.7e-22 79.8 0.1 8.9e-22 77.6 0.0 2.0 2 0 0 2 2 2 1 Restriction Enzyme Adenine Methylase Associated UPF0020 PF01170.18 ABA77610.1 - 0.00083 19.1 0.0 0.094 12.4 0.0 2.5 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 ABA77610.1 - 0.044 13.4 0.0 0.88 9.2 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 ABA77610.1 - 0.12 13.1 0.0 6.1 7.7 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain MethyltransfD12 PF02086.15 ABA77610.1 - 0.19 11.4 0.2 7.2 6.2 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase RNase_HII PF01351.18 ABA77611.1 - 4.9e-43 147.3 0.0 5.6e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Trans_reg_C PF00486.28 ABA77614.1 - 0.00029 20.8 0.0 0.002 18.2 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal DUF4064 PF13273.6 ABA77614.1 - 0.00081 19.6 2.0 0.0013 19.0 2.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4064) U5_2-snRNA_bdg PF10597.9 ABA77614.1 - 0.025 14.7 0.6 0.055 13.5 0.5 1.5 1 1 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 DUF1218 PF06749.12 ABA77614.1 - 0.66 10.5 6.1 1.8 9.2 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) DUF805 PF05656.14 ABA77614.1 - 3 8.3 6.7 9.3 6.7 6.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Orn_DAP_Arg_deC PF00278.22 ABA77616.1 - 3.2e-08 33.7 0.0 3.7e-08 33.5 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Sacchrp_dh_NADP PF03435.18 ABA77617.1 - 1.5e-34 119.0 0.6 2.3e-34 118.5 0.6 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Sacchrp_dh_C PF16653.5 ABA77617.1 - 3.1e-23 83.2 0.0 5.6e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Shikimate_DH PF01488.20 ABA77617.1 - 0.0026 17.8 0.3 0.0043 17.1 0.3 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 ABA77617.1 - 0.039 14.6 0.3 0.1 13.3 0.3 1.7 1 0 0 1 1 1 0 PglD N-terminal domain Staph_opine_DH PF10100.9 ABA77617.1 - 0.19 10.4 0.2 0.26 9.9 0.2 1.2 1 0 0 1 1 1 0 Staphylopine dehydrogenase E1-E2_ATPase PF00122.20 ABA77618.2 - 1.1e-46 158.7 0.3 1.1e-46 158.7 0.3 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 ABA77618.2 - 2.2e-34 119.6 4.2 2.7e-34 119.3 2.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 ABA77618.2 - 0.0018 18.1 0.4 0.003 17.3 0.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hint_2 PF13403.6 ABA77618.2 - 0.09 13.1 0.3 0.21 11.9 0.3 1.6 1 0 0 1 1 1 0 Hint domain ABC_tran PF00005.27 ABA77620.1 - 2.9e-58 196.2 0.0 4e-29 101.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA77620.1 - 2.3e-14 53.9 7.0 7.6e-05 22.7 0.0 4.1 2 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 ABA77620.1 - 3.5e-13 49.8 0.4 5.5e-06 26.8 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 ABA77620.1 - 7.3e-12 45.2 0.0 3.7e-05 23.3 0.0 3.2 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA77620.1 - 1.7e-09 38.3 0.9 9.9e-06 26.0 0.2 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 ABA77620.1 - 3.3e-08 33.9 3.4 0.0011 19.2 0.5 3.5 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.6 ABA77620.1 - 1.4e-07 31.2 0.8 0.0042 16.8 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF87 PF01935.17 ABA77620.1 - 3.1e-05 24.2 1.4 0.12 12.5 0.0 2.3 2 0 0 2 2 2 2 Helicase HerA, central domain RsgA_GTPase PF03193.16 ABA77620.1 - 3.4e-05 23.8 1.5 0.21 11.5 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase FtsK_SpoIIIE PF01580.18 ABA77620.1 - 0.00013 21.4 0.9 0.02 14.3 0.1 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_5 PF07728.14 ABA77620.1 - 0.00015 21.7 1.5 1.7 8.7 0.1 3.4 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 ABA77620.1 - 0.00016 21.7 0.1 0.17 12.0 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_25 PF13481.6 ABA77620.1 - 0.00019 21.1 1.3 0.73 9.4 0.1 3.5 3 1 0 3 3 3 2 AAA domain Mg_chelatase PF01078.21 ABA77620.1 - 0.00028 20.3 0.7 0.63 9.4 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 ABA77620.1 - 0.00029 21.4 0.2 0.1 13.1 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 ABA77620.1 - 0.00038 20.6 0.6 0.12 12.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 ABA77620.1 - 0.00095 19.1 2.0 1.1 9.2 0.2 2.7 2 0 0 2 2 2 2 NACHT domain PRK PF00485.18 ABA77620.1 - 0.0016 18.2 0.0 0.34 10.6 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_7 PF12775.7 ABA77620.1 - 0.0016 17.9 0.4 2 7.9 0.1 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region APS_kinase PF01583.20 ABA77620.1 - 0.0019 18.1 0.5 1.8 8.4 0.1 2.5 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA PF00004.29 ABA77620.1 - 0.0024 18.3 0.1 0.4 11.1 0.0 3.5 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 ABA77620.1 - 0.0042 16.8 1.1 1.7 8.3 0.0 3.2 3 0 0 3 3 3 1 IstB-like ATP binding protein DUF2813 PF11398.8 ABA77620.1 - 0.0078 15.5 0.0 2.4 7.3 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF2813) RNA_helicase PF00910.22 ABA77620.1 - 0.008 16.6 0.3 4 7.9 0.1 2.4 2 0 0 2 2 2 0 RNA helicase DUF3987 PF13148.6 ABA77620.1 - 0.0084 15.2 0.1 3.1 6.7 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3987) SbcCD_C PF13558.6 ABA77620.1 - 0.01 16.0 0.1 1.3 9.4 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 ABA77620.1 - 0.011 15.5 0.1 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 ABA77620.1 - 0.012 15.4 2.0 2.1 8.0 0.2 2.6 2 1 0 2 2 2 0 AAA domain MobB PF03205.14 ABA77620.1 - 0.018 15.0 1.4 1.8 8.5 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.9 ABA77620.1 - 0.02 13.7 3.3 1.4 7.7 0.0 3.7 3 2 0 3 3 3 0 Predicted ATPase of the ABC class ATPase PF06745.13 ABA77620.1 - 0.024 14.0 0.8 1.6 8.1 0.1 2.3 2 0 0 2 2 2 0 KaiC T2SSE PF00437.20 ABA77620.1 - 0.028 13.5 0.1 0.85 8.6 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP-synt_ab PF00006.25 ABA77620.1 - 0.03 14.0 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.26 ABA77620.1 - 0.036 13.8 1.1 10 5.8 0.0 2.8 3 0 0 3 3 2 0 Sigma-54 interaction domain CbiA PF01656.23 ABA77620.1 - 0.038 14.0 5.4 0.42 10.7 0.5 2.9 3 0 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.6 ABA77620.1 - 0.041 14.4 0.0 4.9 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 ABA77620.1 - 0.071 11.8 0.5 0.29 9.7 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.6 ABA77620.1 - 0.13 12.5 1.1 3.4 8.0 0.1 2.6 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 ABA77620.1 - 0.15 11.7 0.2 13 5.4 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase TrwB_AAD_bind PF10412.9 ABA77620.1 - 0.15 10.9 1.4 4.3 6.1 0.2 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_15 PF13175.6 ABA77620.1 - 0.22 11.2 0.0 16 5.0 0.0 2.6 3 0 0 3 3 2 0 AAA ATPase domain Myosin_head PF00063.21 ABA77620.1 - 0.25 9.5 0.2 7.9 4.5 0.1 2.0 2 0 0 2 2 2 0 Myosin head (motor domain) ATP_bind_1 PF03029.17 ABA77620.1 - 0.41 10.4 1.8 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 ABA77620.1 - 0.47 9.4 2.8 1.8 7.5 0.2 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 ABA77620.1 - 0.6 9.3 1.5 3.2 6.9 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain Hpr_kinase_C PF07475.12 ABA77620.1 - 1.4 8.4 3.3 3.2 7.3 0.4 2.2 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain BPD_transp_1 PF00528.22 ABA77621.1 - 7.2e-27 94.3 11.6 7.2e-27 94.3 11.6 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA77621.1 - 4e-15 55.5 0.4 4e-15 55.5 0.4 3.0 2 1 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C EMP70 PF02990.16 ABA77621.1 - 1.6 7.3 4.1 2.8 6.5 4.1 1.3 1 0 0 1 1 1 0 Endomembrane protein 70 BPD_transp_1 PF00528.22 ABA77622.1 - 7.1e-41 140.0 15.9 7.1e-41 140.0 15.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4337 PF14235.6 ABA77622.1 - 0.21 11.7 0.8 0.38 10.9 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) SBP_bac_5 PF00496.22 ABA77623.1 - 3.6e-92 309.2 0.2 4.3e-92 309.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DEAD PF00270.29 ABA77625.2 - 2.4e-42 144.7 0.0 4.5e-42 143.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 ABA77625.2 - 2e-24 86.1 0.0 4e-24 85.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DbpA PF03880.15 ABA77625.2 - 6.9e-10 38.8 0.0 1.3e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 ABA77625.2 - 0.0038 17.2 0.0 0.0063 16.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 ABA77625.2 - 0.023 14.1 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit TetR_N PF00440.23 ABA77627.1 - 8.6e-19 67.1 1.1 6.1e-18 64.3 0.6 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 ABA77627.1 - 0.0029 17.8 4.7 0.0029 17.8 4.7 1.9 2 1 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_13 PF16925.5 ABA77627.1 - 0.048 13.6 0.0 0.065 13.2 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF1428 PF07237.11 ABA77628.1 - 3.6e-41 139.5 0.5 4.2e-41 139.3 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) Glyoxalase_6 PF18029.1 ABA77629.1 - 7.6e-21 74.9 2.5 1.7e-12 48.1 0.5 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.25 ABA77629.1 - 3.7e-09 36.8 0.0 0.009 16.2 0.0 3.0 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TPR_20 PF14561.6 ABA77630.1 - 4.2e-31 107.1 0.4 4.2e-31 107.1 0.4 2.8 2 1 0 3 3 3 1 Tetratricopeptide repeat Thioredoxin PF00085.20 ABA77630.1 - 8.6e-26 89.9 0.0 1.5e-25 89.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin TPR_19 PF14559.6 ABA77630.1 - 5.1e-14 52.5 16.9 6.8e-09 36.1 7.0 2.6 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 ABA77630.1 - 1.6e-06 28.6 27.5 0.0081 16.8 4.5 3.7 1 1 2 3 3 3 2 Tetratricopeptide repeat Thioredoxin_2 PF13098.6 ABA77630.1 - 2.9e-06 27.7 0.3 6e-05 23.5 0.3 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain TPR_17 PF13431.6 ABA77630.1 - 4.2e-06 26.8 0.2 0.017 15.4 0.0 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat Thioredoxin_8 PF13905.6 ABA77630.1 - 1.3e-05 25.4 0.0 3.9e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.6 ABA77630.1 - 1.8e-05 24.8 0.0 6.2e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 Thioredoxin-like BTAD PF03704.17 ABA77630.1 - 0.00015 22.2 7.9 0.077 13.4 2.0 2.2 1 1 1 2 2 2 2 Bacterial transcriptional activator domain AhpC-TSA PF00578.21 ABA77630.1 - 0.00028 20.8 0.0 0.00048 20.0 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family TPR_14 PF13428.6 ABA77630.1 - 0.0058 17.4 24.8 0.069 14.0 1.6 4.4 2 2 2 4 4 4 2 Tetratricopeptide repeat Thioredoxin_3 PF13192.6 ABA77630.1 - 0.0078 16.2 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin domain TPR_4 PF07721.14 ABA77630.1 - 0.014 16.0 1.3 0.014 16.0 1.3 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC3 PF12895.7 ABA77630.1 - 0.028 14.6 1.6 1.3 9.3 0.0 2.3 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 ABA77630.1 - 0.031 14.5 10.7 1.3 9.3 0.3 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 ABA77630.1 - 0.033 13.9 2.7 0.12 12.1 0.0 3.0 3 1 1 4 4 3 0 TPR repeat OST3_OST6 PF04756.13 ABA77630.1 - 0.051 12.9 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family TPR_1 PF00515.28 ABA77630.1 - 0.065 13.1 2.7 12 5.9 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 ABA77630.1 - 0.079 13.2 0.9 4.1 7.9 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat LON_substr_bdg PF02190.16 ABA77631.1 - 1.6e-22 80.4 0.0 5.3e-22 78.7 0.0 1.7 1 1 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain Trm112p PF03966.16 ABA77632.1 - 2e-06 28.3 0.0 5.2e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 Trm112p-like protein FAD_binding_3 PF01494.19 ABA77633.1 - 8.9e-27 94.2 0.0 1.2e-26 93.8 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 ABA77633.1 - 0.00038 20.1 1.4 0.00068 19.3 1.0 1.7 1 1 1 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 ABA77633.1 - 0.0004 19.6 1.2 0.25 10.4 0.2 2.9 3 0 0 3 3 3 2 Lycopene cyclase protein Trp_halogenase PF04820.14 ABA77633.1 - 0.00078 18.4 0.1 0.24 10.2 0.0 2.7 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 ABA77633.1 - 0.0017 17.6 0.1 0.29 10.3 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA77633.1 - 0.003 17.7 0.0 0.011 16.0 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 ABA77633.1 - 0.0058 15.8 0.7 0.008 15.3 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain SE PF08491.10 ABA77633.1 - 0.0083 15.2 0.0 0.024 13.7 0.0 1.6 2 0 0 2 2 2 1 Squalene epoxidase Pyr_redox PF00070.27 ABA77633.1 - 0.015 15.9 0.0 0.35 11.4 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA77633.1 - 0.026 13.9 0.2 0.042 13.2 0.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase XdhC_C PF13478.6 ABA77633.1 - 0.082 13.4 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain Amidase PF01425.21 ABA77634.2 - 5e-72 243.3 3.0 1.5e-71 241.7 3.0 1.8 1 1 0 1 1 1 1 Amidase Aminotran_1_2 PF00155.21 ABA77635.1 - 9.6e-37 127.0 0.0 1.1e-36 126.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 ABA77635.1 - 8.2e-07 28.1 0.0 1.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase FtsK_SpoIIIE PF01580.18 ABA77636.1 - 2.1e-66 223.8 0.1 4.5e-66 222.7 0.1 1.6 1 1 0 1 1 1 1 FtsK/SpoIIIE family FtsK_4TM PF13491.6 ABA77636.1 - 3.1e-31 108.4 10.8 5e-31 107.7 10.8 1.3 1 0 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE FtsK_gamma PF09397.10 ABA77636.1 - 4.4e-26 90.5 0.1 9.9e-26 89.3 0.1 1.6 1 0 0 1 1 1 1 Ftsk gamma domain FtsK_alpha PF17854.1 ABA77636.1 - 2.5e-25 88.6 0.0 8e-25 86.9 0.0 1.9 2 0 0 2 2 2 1 FtsK alpha domain AAA_10 PF12846.7 ABA77636.1 - 4.6e-06 25.8 0.0 0.0042 16.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain T2SSE PF00437.20 ABA77636.1 - 0.0009 18.4 0.0 0.0019 17.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF87 PF01935.17 ABA77636.1 - 0.0012 19.0 0.0 0.0028 17.8 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 ABA77636.1 - 0.016 14.2 0.0 0.034 13.1 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 ABA77636.1 - 0.018 15.3 0.1 0.17 12.2 0.1 2.5 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 ABA77636.1 - 0.027 14.3 0.2 0.083 12.6 0.2 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase CtsR_C PF17727.1 ABA77636.1 - 0.053 13.6 0.2 0.84 9.8 0.1 2.6 2 0 0 2 2 2 0 CtsR C-terminal dimerization domain DUF4536 PF15055.6 ABA77636.1 - 0.065 13.5 0.2 0.25 11.6 0.2 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4536) TniB PF05621.11 ABA77636.1 - 0.16 11.4 1.3 5.1 6.5 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein LolA PF03548.15 ABA77637.1 - 2.1e-28 99.1 0.0 2.4e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA COXG PF06240.13 ABA77637.1 - 0.16 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) SLT PF01464.20 ABA77638.1 - 0.0071 16.0 0.0 0.0096 15.6 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase SLT domain YccV-like PF08755.11 ABA77639.2 - 4.9e-27 94.3 0.0 5.6e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 Hemimethylated DNA-binding protein YccV like G_glu_transpept PF01019.21 ABA77640.1 - 7.4e-141 470.4 0.1 8.4e-141 470.2 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase TRM PF02005.16 ABA77640.1 - 0.044 12.9 0.0 0.066 12.4 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase HATPase_c_2 PF13581.6 ABA77641.1 - 1.8e-17 63.5 0.0 2.1e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 ABA77641.1 - 0.26 11.8 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STAS PF01740.21 ABA77642.1 - 8.5e-15 54.4 0.0 9.6e-15 54.3 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 ABA77642.1 - 3e-10 40.3 1.8 4.2e-10 39.8 1.8 1.2 1 0 0 1 1 1 1 STAS domain GAF_2 PF13185.6 ABA77643.1 - 5.5e-10 39.7 0.0 6.4e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 ABA77643.1 - 5.7e-10 39.9 0.1 6.8e-10 39.7 0.1 1.1 1 0 0 1 1 1 1 GAF domain GFA PF04828.14 ABA77644.2 - 2e-12 47.2 0.1 2.6e-12 46.9 0.1 1.1 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme Herpes_UL49_1 PF03117.14 ABA77644.2 - 0.6 9.4 2.4 13 5.0 0.0 2.0 1 1 1 2 2 2 0 UL49 family PseudoU_synth_2 PF00849.22 ABA77646.1 - 1.3e-30 106.6 0.0 1.5e-30 106.4 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase Metallophos_2 PF12850.7 ABA77647.1 - 7.3e-24 84.8 0.0 8.6e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 ABA77647.1 - 1.6e-09 38.6 0.2 9.2e-09 36.1 0.2 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 ABA77647.1 - 0.0046 16.3 0.0 1.6 8.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Aldedh PF00171.22 ABA77648.1 - 1e-151 505.6 0.0 1.1e-151 505.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family HemY_N PF07219.13 ABA77649.1 - 2.3e-23 82.4 5.6 2.3e-23 82.4 5.6 5.0 5 1 1 6 6 6 1 HemY protein N-terminus TPR_19 PF14559.6 ABA77649.1 - 2.4e-13 50.4 20.1 0.0017 18.8 0.1 4.6 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 ABA77649.1 - 5.8e-05 23.6 20.0 0.062 14.2 0.5 6.4 2 2 4 6 6 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 ABA77649.1 - 0.00063 19.9 3.4 3 8.2 0.2 4.2 4 0 0 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 ABA77649.1 - 0.036 14.3 3.2 6.9 7.2 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 ABA77649.1 - 0.068 12.8 3.6 1.4 8.6 0.3 3.4 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_2 PF07719.17 ABA77649.1 - 0.077 13.1 7.2 3.7 7.9 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 ABA77649.1 - 0.093 13.4 11.9 38 5.2 0.0 5.7 5 0 0 5 5 5 0 Tetratricopeptide repeat Rubredoxin_2 PF18073.1 ABA77649.1 - 0.15 11.8 7.2 0.27 11.0 7.2 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain TPR_16 PF13432.6 ABA77649.1 - 0.17 12.6 19.2 0.66 10.7 0.1 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 ABA77649.1 - 0.45 11.0 4.0 34 4.9 1.7 3.4 2 1 0 2 2 2 0 Alkyl sulfatase dimerisation Mitofilin PF09731.9 ABA77650.1 - 2.4e-05 23.4 1.1 2.4e-05 23.4 1.1 2.6 2 1 1 3 3 3 1 Mitochondrial inner membrane protein DUF4763 PF15960.5 ABA77650.1 - 0.15 11.3 0.0 0.35 10.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) ABC_tran_CTD PF16326.5 ABA77650.1 - 0.99 9.7 24.5 0.19 12.0 3.0 4.3 3 1 1 4 4 4 0 ABC transporter C-terminal domain HEM4 PF02602.15 ABA77651.1 - 7.7e-27 94.1 2.9 9e-27 93.9 2.9 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF768 PF05589.11 ABA77651.1 - 1.1 9.4 4.3 0.8 9.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF768) Peptidase_M22 PF00814.25 ABA77652.1 - 6.9e-93 311.3 0.1 7.9e-93 311.1 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 ABA77652.1 - 0.13 11.9 0.0 1.5 8.4 0.1 2.0 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus NAD_Gly3P_dh_C PF07479.14 ABA77653.1 - 5.6e-42 143.4 0.7 8e-42 142.9 0.7 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.23 ABA77653.1 - 1.2e-20 74.1 0.3 1.5e-13 51.0 0.0 2.2 1 1 1 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 ABA77653.1 - 0.00029 21.4 0.0 0.0009 19.8 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 ABA77653.1 - 0.0061 16.2 0.3 0.012 15.3 0.3 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 ABA77653.1 - 0.011 15.6 0.7 0.011 15.6 0.7 2.2 3 0 0 3 3 3 0 Rossmann-like domain ApbA_C PF08546.11 ABA77653.1 - 0.088 13.0 0.0 3.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal YCII PF03795.14 ABA77654.1 - 1.8e-19 69.9 0.1 2.1e-19 69.7 0.1 1.0 1 0 0 1 1 1 1 YCII-related domain EVE PF01878.18 ABA77655.1 - 1.4e-46 158.1 0.0 1.5e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 EVE domain PALP PF00291.25 ABA77656.1 - 1.2e-42 146.3 2.1 1.5e-42 146.0 2.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AdoHcyase PF05221.17 ABA77657.1 - 1.4e-144 480.8 0.0 1.5e-144 480.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 ABA77657.1 - 1.7e-81 272.0 3.9 3e-81 271.2 3.9 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 ABA77657.1 - 2.4e-06 27.0 0.2 4.1e-06 26.3 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 ABA77657.1 - 5.5e-06 26.1 0.5 1e-05 25.2 0.5 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 ABA77657.1 - 0.0015 18.7 0.4 0.011 16.0 0.5 2.4 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 ABA77657.1 - 0.017 15.5 0.5 0.042 14.3 0.5 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding THF_DHG_CYH_C PF02882.19 ABA77657.1 - 0.28 10.5 2.0 1.4 8.2 2.0 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_transf_8 PF01501.20 ABA77658.2 - 1.9e-51 175.1 0.0 2.3e-51 174.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 8 HD_2 PF12917.7 ABA77659.1 - 1.2e-07 31.7 0.0 1.7e-05 24.6 0.0 2.8 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 ABA77659.1 - 1e-05 25.8 0.1 2.8e-05 24.3 0.1 1.7 1 1 0 1 1 1 1 HD domain HD_3 PF13023.6 ABA77659.1 - 0.00061 19.7 0.0 0.00077 19.4 0.0 1.2 1 0 0 1 1 1 1 HD domain HD_4 PF13328.6 ABA77659.1 - 0.0032 17.2 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 HD domain Histone_HNS PF00816.21 ABA77660.1 - 5.8e-24 84.7 3.1 6.6e-24 84.5 3.1 1.0 1 0 0 1 1 1 1 H-NS histone family K-box PF01486.17 ABA77660.1 - 0.0024 18.0 0.5 0.0039 17.3 0.5 1.3 1 0 0 1 1 1 1 K-box region ZapB PF06005.12 ABA77660.1 - 0.041 14.3 2.2 0.066 13.7 2.2 1.4 1 1 0 1 1 1 0 Cell division protein ZapB GPW_gp25 PF04965.14 ABA77660.1 - 0.088 12.6 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme Response_reg PF00072.24 ABA77661.1 - 3.2e-21 75.6 0.0 4.4e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HTH_30 PF13556.6 ABA77661.1 - 7.7e-05 22.4 0.1 0.00021 21.1 0.1 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 ABA77661.1 - 0.00019 21.1 0.5 0.00049 19.8 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 ABA77661.1 - 0.0013 18.4 1.1 0.003 17.3 1.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 ABA77661.1 - 0.0047 17.0 0.2 0.013 15.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 ABA77661.1 - 0.011 15.8 0.6 0.026 14.5 0.6 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 ABA77661.1 - 0.053 12.9 0.1 0.1 12.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 ABA77661.1 - 0.063 13.0 1.0 0.26 11.1 1.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TadZ_N PF16968.5 ABA77661.1 - 0.082 12.6 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Pilus assembly protein TadZ N-terminal MarR PF01047.22 ABA77661.1 - 0.084 12.8 0.1 12 6.0 0.0 2.4 2 0 0 2 2 2 0 MarR family OKR_DC_1_N PF03709.15 ABA77661.1 - 0.11 12.8 0.0 0.38 11.0 0.0 1.9 2 1 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain Glyco_trans_4_2 PF13477.6 ABA77661.1 - 0.12 12.4 0.0 0.36 10.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase 4-like SCO1-SenC PF02630.14 ABA77662.1 - 4.6e-45 152.8 0.3 2.4e-44 150.5 0.1 1.9 2 0 0 2 2 2 1 SCO1/SenC YcxB PF14317.6 ABA77662.1 - 0.0034 17.0 0.6 0.043 13.5 0.1 2.1 2 0 0 2 2 2 1 YcxB-like protein Peptidase_M27 PF01742.17 ABA77662.1 - 0.061 12.4 0.0 0.074 12.2 0.0 1.1 1 0 0 1 1 1 0 Clostridial neurotoxin zinc protease PAS_3 PF08447.12 ABA77662.1 - 0.077 13.3 0.0 0.22 11.8 0.0 1.7 1 1 1 2 2 2 0 PAS fold AhpC-TSA PF00578.21 ABA77662.1 - 0.077 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA family HATPase_c PF02518.26 ABA77663.1 - 8.7e-14 52.0 0.0 1.6e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA77663.1 - 2.2e-08 34.0 0.1 5.8e-08 32.7 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 ABA77663.1 - 0.0082 16.0 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 ABA77664.1 - 7e-19 68.1 0.0 2e-11 44.1 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 ABA77664.1 - 1.6e-09 37.5 0.7 0.0057 16.7 0.0 4.4 4 1 1 5 5 5 3 PAS domain PAS_4 PF08448.10 ABA77664.1 - 0.00018 21.7 2.0 1.2 9.4 0.1 4.5 3 2 1 4 4 4 2 PAS fold PAS PF00989.25 ABA77664.1 - 0.0055 16.7 0.0 4.3 7.4 0.0 3.0 3 0 0 3 3 3 2 PAS fold TsaE PF02367.17 ABA77665.2 - 2.1e-35 121.4 0.0 2.7e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 ABA77665.2 - 0.00021 21.7 0.0 0.00022 21.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 ABA77665.2 - 0.0011 18.7 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 ABA77665.2 - 0.0092 16.3 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 ABA77665.2 - 0.018 15.4 0.0 0.024 15.1 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 ABA77665.2 - 0.027 14.6 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA77665.2 - 0.033 13.9 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 ABA77665.2 - 0.034 13.6 0.0 0.043 13.3 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 ABA77665.2 - 0.053 14.0 0.0 0.081 13.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 ABA77665.2 - 0.07 13.0 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 ABA77665.2 - 0.071 13.7 0.0 0.11 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 ABA77665.2 - 0.073 12.8 0.0 0.09 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA77665.2 - 0.16 12.4 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA helicase cobW PF02492.19 ABA77665.2 - 0.17 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain dNK PF01712.19 ABA77665.2 - 0.27 11.1 0.0 0.31 10.9 0.0 1.1 1 0 0 1 1 1 0 Deoxynucleoside kinase APH PF01636.23 ABA77666.1 - 1.1e-21 77.8 14.8 1.1e-21 77.8 14.8 1.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family DUF1679 PF07914.11 ABA77666.1 - 0.00082 18.3 0.0 0.0012 17.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 ABA77666.1 - 0.00099 18.5 0.0 0.0025 17.2 0.0 1.5 2 0 0 2 2 2 1 Ecdysteroid kinase Clp_N PF02861.20 ABA77666.1 - 0.0046 17.0 0.4 0.014 15.5 0.4 1.9 1 0 0 1 1 1 1 Clp amino terminal domain, pathogenicity island component NTP_transf_3 PF12804.7 ABA77667.1 - 2.7e-14 53.9 1.2 3.4e-14 53.5 1.2 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 ABA77667.1 - 5.8e-11 42.4 0.0 7.7e-09 35.5 0.0 2.1 1 1 1 2 2 2 2 Nucleotidyl transferase IspD PF01128.19 ABA77667.1 - 4.8e-05 23.2 0.0 7.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PDDEXK_1 PF12705.7 ABA77668.1 - 1e-20 74.7 0.0 2.2e-20 73.7 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Phage_TAC_7 PF10109.9 ABA77668.1 - 0.16 12.1 0.1 0.49 10.5 0.1 1.9 1 0 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 UvrD-helicase PF00580.21 ABA77669.1 - 6.4e-52 177.0 0.0 3.6e-51 174.5 0.0 2.0 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 ABA77669.1 - 1.3e-21 77.5 0.0 2.4e-20 73.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 ABA77669.1 - 1.5e-14 54.1 0.0 7.5e-13 48.6 0.0 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 ABA77669.1 - 1.1e-12 47.5 0.3 5.4e-05 22.9 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 ABA77669.1 - 2.5e-10 40.7 0.0 1e-09 38.7 0.0 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 ABA77669.1 - 0.0072 16.1 0.7 0.13 12.0 0.1 2.8 2 0 0 2 2 2 1 AAA domain DUF3638 PF12340.8 ABA77669.1 - 0.16 11.3 0.0 0.38 10.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) Thioredoxin PF00085.20 ABA77670.1 - 6.7e-34 116.0 0.0 7.3e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 ABA77670.1 - 2.1e-09 37.6 0.0 2.7e-08 34.0 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.10 ABA77670.1 - 5.6e-08 32.6 0.0 6.2e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 ABA77670.1 - 1.1e-07 32.2 0.0 2.1e-07 31.4 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.21 ABA77670.1 - 7.8e-07 29.0 0.0 8.3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.6 ABA77670.1 - 0.00013 22.1 0.0 0.00019 21.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 ABA77670.1 - 0.00019 21.3 0.0 0.00024 21.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 ABA77670.1 - 0.0003 20.5 0.0 0.00034 20.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 ABA77670.1 - 0.00055 19.4 0.0 0.00055 19.4 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 ABA77670.1 - 0.0012 18.9 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 ABA77670.1 - 0.0044 17.2 0.1 0.0083 16.3 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 ABA77670.1 - 0.059 13.5 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin DUF953 PF06110.11 ABA77670.1 - 0.11 12.1 0.1 0.19 11.3 0.1 1.6 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DUF836 PF05768.14 ABA77670.1 - 0.18 12.2 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Proteasome PF00227.26 ABA77672.1 - 2.9e-24 85.6 0.5 1.9e-23 82.9 0.5 1.8 1 1 0 1 1 1 1 Proteasome subunit A_amylase_inhib PF01356.19 ABA77672.1 - 0.1 12.6 0.0 4.4 7.4 0.0 2.5 2 0 0 2 2 2 0 Alpha amylase inhibitor AAA_2 PF07724.14 ABA77673.1 - 3.2e-47 160.8 0.1 1.9e-39 135.5 0.1 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.29 ABA77673.1 - 3.9e-14 53.2 0.1 1e-05 26.0 0.0 3.2 1 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA77673.1 - 1.2e-07 31.8 0.6 4.8e-05 23.4 0.0 2.9 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 ABA77673.1 - 2.8e-05 23.9 0.3 0.009 15.8 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 ABA77673.1 - 3.3e-05 23.1 0.1 0.013 14.6 0.0 2.2 2 0 0 2 2 2 2 MCM P-loop domain AAA_16 PF13191.6 ABA77673.1 - 6e-05 23.5 0.4 0.0002 21.8 0.0 2.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 ABA77673.1 - 9e-05 22.8 0.1 0.00058 20.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 ABA77673.1 - 0.0012 18.3 0.0 0.039 13.3 0.0 2.8 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI TniB PF05621.11 ABA77673.1 - 0.004 16.6 0.3 0.016 14.6 0.0 2.1 2 1 0 2 2 2 1 Bacterial TniB protein AAA_18 PF13238.6 ABA77673.1 - 0.0057 17.2 0.0 0.014 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA77673.1 - 0.0063 16.7 0.0 0.017 15.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 ABA77673.1 - 0.011 15.5 0.1 0.92 9.3 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase Sigma54_activat PF00158.26 ABA77673.1 - 0.021 14.5 0.0 0.38 10.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain TsaE PF02367.17 ABA77673.1 - 0.055 13.5 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 ABA77673.1 - 0.056 13.2 0.1 0.64 9.8 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 ABA77673.1 - 0.057 13.2 0.0 0.28 10.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein 6PF2K PF01591.18 ABA77673.1 - 0.073 12.4 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase RsgA_GTPase PF03193.16 ABA77673.1 - 0.09 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 ABA77673.1 - 0.13 11.7 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region ResIII PF04851.15 ABA77673.1 - 0.14 12.2 0.0 0.77 9.7 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin PF02224.18 ABA77673.1 - 0.67 9.6 9.5 20 4.8 0.0 3.1 2 1 0 3 3 3 0 Cytidylate kinase MBOAT PF03062.19 ABA77674.1 - 1.4e-17 64.1 19.3 3.5e-17 62.8 0.7 3.7 3 1 1 4 4 4 3 MBOAT, membrane-bound O-acyltransferase family MBOAT_2 PF13813.6 ABA77674.1 - 0.0013 19.0 3.1 0.01 16.1 3.1 2.5 1 1 0 1 1 1 1 Membrane bound O-acyl transferase family PP-binding PF00550.25 ABA77675.1 - 0.0011 19.3 0.2 0.0012 19.1 0.2 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site Acid_PPase PF12689.7 ABA77676.1 - 0.029 14.2 0.2 0.31 10.9 0.2 2.2 1 1 0 1 1 1 0 Acid Phosphatase Hydrolase PF00702.26 ABA77676.1 - 0.066 13.5 0.3 2.6 8.3 0.0 3.0 3 1 1 4 4 4 0 haloacid dehalogenase-like hydrolase NIF PF03031.18 ABA77676.1 - 0.071 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase adh_short PF00106.25 ABA77677.1 - 1.8e-17 63.5 0.0 2.4e-11 43.5 0.0 2.0 2 0 0 2 2 2 2 short chain dehydrogenase adh_short_C2 PF13561.6 ABA77677.1 - 1.2e-13 51.1 0.5 1.5e-13 50.9 0.1 1.3 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 ABA77677.1 - 0.037 13.5 0.0 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family KR PF08659.10 ABA77677.1 - 0.055 13.4 0.1 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 KR domain DUF543 PF04418.12 ABA77677.1 - 0.13 12.3 3.9 0.25 11.4 3.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF543) MaoC_dehydratas PF01575.19 ABA77678.1 - 1.1e-14 54.0 0.0 1.6e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 ABA77678.1 - 0.00067 19.8 0.0 0.0013 18.9 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 ABA77678.1 - 0.037 14.4 0.0 0.077 13.4 0.0 1.6 1 0 0 1 1 1 0 Thioesterase superfamily NTP_transferase PF00483.23 ABA77680.1 - 2.1e-15 57.0 0.0 3.9e-15 56.1 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 ABA77680.1 - 9.2e-09 35.8 0.0 1.4e-08 35.3 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 ABA77680.1 - 0.013 15.3 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_tranf_2_3 PF13641.6 ABA77681.1 - 7.7e-18 65.2 0.3 1.1e-17 64.7 0.3 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 ABA77681.1 - 1.7e-16 60.5 0.0 2.6e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 ABA77681.1 - 0.00032 20.3 0.0 0.0035 16.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 CrtC PF07143.11 ABA77682.1 - 1.1e-54 185.6 3.3 2.2e-54 184.6 3.3 1.5 1 0 0 1 1 1 1 CrtC N-terminal lipocalin domain Lipocalin_9 PF17186.4 ABA77682.1 - 1.4e-39 135.3 1.7 1.8e-39 135.0 0.0 2.0 3 0 0 3 3 3 1 Lipocalin-like domain FtsX PF02687.21 ABA77683.1 - 9.1e-15 54.9 15.2 1.8e-09 37.9 2.9 5.1 6 1 0 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 ABA77683.1 - 2.4e-08 34.6 0.0 7.9e-07 29.6 0.0 2.4 2 0 0 2 2 2 1 MacB-like periplasmic core domain ABC_tran PF00005.27 ABA77684.2 - 1.8e-29 103.0 0.0 2.4e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 ABA77684.2 - 1.8e-05 25.2 1.8 2.8e-05 24.6 1.8 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA77684.2 - 0.00017 21.2 0.1 0.00034 20.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA77684.2 - 0.0015 18.1 0.2 0.14 11.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 ABA77684.2 - 0.0091 16.3 0.3 0.02 15.2 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA77684.2 - 0.014 15.2 4.6 0.055 13.2 4.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 ABA77684.2 - 0.016 15.0 0.0 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA77684.2 - 0.052 13.5 0.1 0.08 12.8 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 ABA77684.2 - 0.071 12.8 0.1 0.19 11.4 0.1 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2594 PF10769.9 ABA77684.2 - 0.12 12.4 0.2 0.84 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2594) NACHT PF05729.12 ABA77684.2 - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 ABA77684.2 - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 NTPase DUF1513 PF07433.11 ABA77685.1 - 1.8e-106 355.7 0.0 2.1e-106 355.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1513) Peptidase_M75 PF09375.10 ABA77686.1 - 4.5e-36 124.8 2.4 6e-36 124.4 2.4 1.2 1 0 0 1 1 1 1 Imelysin DHOR PF06537.11 ABA77687.1 - 8.6e-130 433.6 0.0 1e-129 433.4 0.0 1.0 1 0 0 1 1 1 1 Di-haem oxidoreductase, putative peroxidase Cytochrom_C PF00034.21 ABA77687.1 - 4.6e-08 34.1 0.3 0.0022 19.1 0.1 2.9 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA77687.1 - 0.1 13.0 0.1 7.6 6.9 0.0 3.1 3 0 0 3 3 3 0 Cytochrome C oxidase, cbb3-type, subunit III Ferritin PF00210.24 ABA77688.1 - 1.5e-31 109.3 1.0 1.6e-31 109.1 1.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 ABA77688.1 - 1.1e-06 29.1 0.7 0.009 16.4 0.1 2.0 2 0 0 2 2 2 2 Rubrerythrin Fer2_BFD PF04324.15 ABA77689.1 - 3.7e-09 36.8 0.4 2.1e-08 34.4 0.1 2.0 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain DEK_C PF08766.11 ABA77689.1 - 0.027 14.4 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 DEK C terminal domain Peptidase_M75 PF09375.10 ABA77690.1 - 1.3e-97 326.7 2.0 1.5e-97 326.5 2.0 1.0 1 0 0 1 1 1 1 Imelysin hemP PF10636.9 ABA77691.1 - 3.3e-16 58.8 0.5 3.9e-16 58.6 0.5 1.1 1 0 0 1 1 1 1 Hemin uptake protein hemP DUF533 PF04391.12 ABA77692.1 - 2.7e-42 144.4 0.1 3.4e-42 144.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF533) IclR PF01614.18 ABA77693.1 - 1e-35 122.3 0.0 1.7e-35 121.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 ABA77693.1 - 9.7e-11 41.3 2.9 9.7e-11 41.3 2.9 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 ABA77693.1 - 0.00071 19.6 1.2 0.003 17.6 1.2 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_15 PF12324.8 ABA77693.1 - 0.0011 18.9 1.4 0.004 17.1 0.2 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain of alkylmercury lyase HTH_Crp_2 PF13545.6 ABA77693.1 - 0.0038 17.2 2.3 1.4 9.0 0.2 2.4 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain MarR PF01047.22 ABA77693.1 - 0.0084 16.0 0.2 0.0084 16.0 0.2 2.4 3 0 0 3 3 3 1 MarR family HTH_7 PF02796.15 ABA77693.1 - 0.012 15.6 0.4 0.21 11.7 0.0 2.7 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase TrmB PF01978.19 ABA77693.1 - 0.016 15.1 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ORC5_C PF14630.6 ABA77693.1 - 0.016 14.7 0.0 0.038 13.5 0.1 1.5 2 0 0 2 2 2 0 Origin recognition complex (ORC) subunit 5 C-terminus HemN_C PF06969.16 ABA77693.1 - 0.021 14.9 0.1 0.051 13.7 0.1 1.6 1 0 0 1 1 1 0 HemN C-terminal domain DUF3489 PF11994.8 ABA77693.1 - 0.031 14.4 0.1 0.066 13.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_DeoR PF08220.12 ABA77693.1 - 0.057 13.2 0.1 0.21 11.4 0.1 2.1 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain ANTAR PF03861.14 ABA77693.1 - 0.075 12.9 2.8 0.21 11.4 0.5 3.0 3 0 0 3 3 3 0 ANTAR domain HTH_11 PF08279.12 ABA77693.1 - 0.18 11.7 0.4 0.69 9.9 0.1 2.0 2 0 0 2 2 2 0 HTH domain Phage_rep_org_N PF09681.10 ABA77693.1 - 0.19 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Glyoxalase PF00903.25 ABA77694.1 - 1.5e-07 31.7 0.1 5.5e-07 29.8 0.1 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 ABA77694.1 - 9.3e-05 23.2 0.4 0.00012 22.9 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Ureidogly_lyase PF04115.12 ABA77695.1 - 2.2e-45 154.7 0.0 2.5e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 Ureidoglycolate lyase Cupin_2 PF07883.11 ABA77696.1 - 3.3e-23 81.2 1.0 6.5e-12 45.0 0.5 2.3 2 0 0 2 2 2 2 Cupin domain Cupin_3 PF05899.12 ABA77696.1 - 1.7e-11 43.6 0.4 9.9e-09 34.8 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF861) AraC_binding PF02311.19 ABA77696.1 - 5.2e-10 39.4 0.5 0.00011 22.1 0.4 2.2 2 0 0 2 2 2 2 AraC-like ligand binding domain CENP-C_C PF11699.8 ABA77696.1 - 8.9e-05 22.6 0.0 0.00018 21.6 0.0 1.5 2 0 0 2 2 2 1 Mif2/CENP-C like Cupin_6 PF12852.7 ABA77696.1 - 0.0041 16.9 0.2 0.037 13.8 0.1 2.1 1 1 1 2 2 2 1 Cupin OHCU_decarbox PF09349.10 ABA77697.1 - 1e-38 133.3 0.3 1.6e-38 132.6 0.3 1.3 1 0 0 1 1 1 1 OHCU decarboxylase Polysacc_deac_1 PF01522.21 ABA77697.1 - 4.3e-11 42.8 0.0 9.8e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 ABA77697.1 - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 Transthyretin PF00576.21 ABA77698.1 - 4.1e-34 117.6 0.0 4.6e-34 117.4 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family CarboxypepD_reg PF13620.6 ABA77698.1 - 5.2e-05 23.4 0.8 0.00021 21.5 0.3 2.1 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain LHC PF00556.20 ABA77699.1 - 2e-08 34.3 1.0 2.1e-08 34.2 0.4 1.3 2 0 0 2 2 2 1 Antenna complex alpha/beta subunit LHC PF00556.20 ABA77700.1 - 3.4e-12 46.4 1.6 5.1e-12 45.8 1.6 1.3 1 0 0 1 1 1 1 Antenna complex alpha/beta subunit Iso_dh PF00180.20 ABA77701.1 - 3.2e-70 237.0 0.0 3.7e-70 236.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase ApbA PF02558.16 ABA77702.1 - 2.1e-23 82.7 0.1 8.6e-23 80.7 0.1 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 ABA77702.1 - 2e-09 37.7 0.0 2.9e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.17 ABA77702.1 - 1.6e-05 25.4 0.1 2.8e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 ABA77702.1 - 0.004 16.7 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 ABA77702.1 - 0.1 13.2 0.3 0.18 12.4 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 ABA77702.1 - 0.17 11.1 0.6 0.24 10.6 0.6 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AMP-binding PF00501.28 ABA77703.1 - 1.1e-84 284.6 0.0 1.4e-84 284.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA77703.1 - 1.3e-14 54.9 0.9 1.3e-14 54.9 0.9 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain FAA_hydrolase PF01557.18 ABA77704.1 - 1.3e-55 188.4 0.0 1.5e-55 188.2 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Bac_luciferase PF00296.20 ABA77705.2 - 1.3e-33 116.8 13.1 2.9e-33 115.6 13.1 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase AI-2E_transport PF01594.16 ABA77706.1 - 2e-34 119.2 36.3 1.3e-33 116.6 36.3 1.8 1 1 0 1 1 1 1 AI-2E family transporter BLUF PF04940.12 ABA77707.1 - 2e-28 98.4 0.0 4.4e-28 97.2 0.0 1.6 1 0 0 1 1 1 1 Sensors of blue-light using FAD CbiX PF01903.17 ABA77708.1 - 4.4e-15 55.9 0.0 5.1e-09 36.4 0.0 2.3 2 0 0 2 2 2 2 CbiX HATPase_c PF02518.26 ABA77709.1 - 7e-30 103.8 0.0 1.3e-29 103.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA77709.1 - 2.5e-22 79.2 0.0 5.7e-22 78.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 ABA77709.1 - 2.3e-15 56.4 0.7 1.5e-14 53.8 0.7 2.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 ABA77709.1 - 6.2e-10 39.3 0.0 1.2e-09 38.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 ABA77709.1 - 3.8e-08 33.3 0.0 7.9e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 ABA77709.1 - 8.5e-08 32.0 0.2 3.2e-07 30.2 0.2 2.1 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 ABA77709.1 - 3.7e-07 30.4 2.1 5.7e-07 29.8 0.6 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 ABA77709.1 - 0.00064 19.6 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 ABA77709.1 - 0.0096 16.2 4.5 0.011 16.0 1.1 3.0 2 1 0 2 2 2 1 Hpt domain Plasmid_RAQPRD PF09686.10 ABA77709.1 - 0.35 11.1 2.1 2.5 8.4 0.1 3.2 3 0 0 3 3 3 0 Plasmid protein of unknown function (Plasmid_RAQPRD) Gln-synt_C PF00120.24 ABA77710.2 - 7.2e-101 337.6 0.0 8.4e-101 337.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Aminotran_3 PF00202.21 ABA77711.1 - 3.4e-36 124.8 0.0 4.3e-36 124.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III ATP-grasp PF02222.22 ABA77712.1 - 1.3e-52 177.8 0.0 1.8e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 ABA77712.1 - 1.7e-12 46.8 0.2 3.7e-12 45.7 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain XdhC_C PF13478.6 ABA77712.1 - 0.0038 17.7 0.1 0.18 12.3 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 ABA77712.1 - 0.0085 15.5 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AIRC PF00731.20 ABA77713.1 - 1.3e-63 213.0 1.6 1.5e-63 212.8 1.6 1.0 1 0 0 1 1 1 1 AIR carboxylase DUF465 PF04325.13 ABA77714.1 - 1.7e-15 56.7 4.3 2.3e-15 56.3 4.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF465) HSP20 PF00011.21 ABA77715.2 - 2e-16 60.0 0.0 2.6e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 ABA77715.2 - 0.00065 19.2 0.0 0.0012 18.4 0.0 1.4 1 1 0 1 1 1 1 HSP20-like domain found in ArsA SymE_toxin PF08845.10 ABA77715.2 - 0.16 12.1 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system DUF1150 PF06620.11 ABA77716.1 - 2e-22 79.1 0.1 2.3e-22 78.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1150) TruB_C PF09142.11 ABA77716.1 - 0.013 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal Ni_hydr_CYTB PF01292.20 ABA77717.1 - 3.3e-20 72.4 11.0 3.8e-20 72.2 11.0 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 ATP-sulfurylase PF01747.17 ABA77718.2 - 2.2e-87 292.0 0.0 3.4e-87 291.4 0.0 1.3 1 0 0 1 1 1 1 ATP-sulfurylase APS_kinase PF01583.20 ABA77718.2 - 9.2e-63 210.8 0.0 1.5e-62 210.1 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase PUA_2 PF14306.6 ABA77718.2 - 9.8e-50 168.3 0.0 1.5e-49 167.7 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain AAA_33 PF13671.6 ABA77718.2 - 2.5e-07 31.0 0.1 7.6e-07 29.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 ABA77718.2 - 5.6e-05 23.2 0.0 0.0001 22.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 ABA77718.2 - 0.00016 22.2 0.0 0.00054 20.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 ABA77718.2 - 0.00053 19.7 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 ABA77718.2 - 0.0035 17.9 0.0 0.0069 16.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ParA PF10609.9 ABA77718.2 - 0.0074 15.8 0.1 0.016 14.7 0.1 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 ABA77718.2 - 0.0098 15.2 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 ABA77718.2 - 0.011 15.2 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CLP1_P PF16575.5 ABA77718.2 - 0.012 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 ABA77718.2 - 0.015 14.3 0.1 0.029 13.3 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 ABA77718.2 - 0.016 15.7 0.1 0.03 14.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA77718.2 - 0.05 13.5 0.1 0.094 12.6 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 ABA77718.2 - 0.057 13.8 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.9 ABA77718.2 - 0.091 12.0 0.0 0.37 10.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.6 ABA77718.2 - 0.098 13.1 0.0 0.15 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA77718.2 - 0.12 11.9 0.1 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 ABA77718.2 - 0.15 12.5 0.0 0.39 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 ABA77718.2 - 0.17 12.0 0.0 0.47 10.5 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 ABA77718.2 - 0.18 11.5 0.0 0.38 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Pyr_redox_2 PF07992.14 ABA77719.2 - 1.9e-50 171.8 0.1 2.2e-50 171.6 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA77719.2 - 7.3e-19 68.1 1.1 1.1e-17 64.3 0.2 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA77719.2 - 4.1e-18 65.7 0.0 3.8e-15 55.9 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 ABA77719.2 - 4e-06 26.2 0.9 0.081 12.0 0.0 4.1 4 1 0 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 ABA77719.2 - 8.1e-06 25.2 2.5 0.0086 15.2 0.1 4.1 1 1 1 4 4 4 1 FAD binding domain DAO PF01266.24 ABA77719.2 - 5.5e-05 22.9 1.6 0.011 15.3 0.0 3.0 1 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 ABA77719.2 - 0.00014 22.2 0.2 0.014 15.8 0.0 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 ABA77719.2 - 0.00041 19.8 0.6 0.0084 15.5 0.0 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 ABA77719.2 - 0.015 14.6 0.5 0.17 11.1 0.0 2.3 2 1 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 ABA77719.2 - 0.021 14.1 0.2 0.32 10.2 0.0 2.4 2 1 0 2 2 2 0 Thi4 family HI0933_like PF03486.14 ABA77719.2 - 0.022 13.5 0.2 0.71 8.5 0.0 2.5 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_8 PF13450.6 ABA77719.2 - 0.025 14.8 0.0 0.062 13.5 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 ABA77719.2 - 0.041 12.7 0.2 0.32 9.8 0.1 2.2 3 0 0 3 3 3 0 Tryptophan halogenase NAD_binding_9 PF13454.6 ABA77719.2 - 0.09 12.8 0.3 1 9.3 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding FMO-like PF00743.19 ABA77719.2 - 0.17 10.3 0.0 0.3 9.5 0.0 1.4 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like K_oxygenase PF13434.6 ABA77719.2 - 0.25 10.4 0.3 2.7 7.1 0.1 2.6 2 1 1 4 4 4 0 L-lysine 6-monooxygenase (NADPH-requiring) HTH_24 PF13412.6 ABA77720.1 - 1.9e-20 72.2 0.0 3e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 ABA77720.1 - 1e-18 67.0 0.0 1.6e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 ABA77720.1 - 1.2e-17 63.5 0.2 1.9e-17 62.8 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 ABA77720.1 - 1e-06 28.7 0.1 2.4e-06 27.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 ABA77720.1 - 5.6e-06 26.2 0.0 1.3e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 ABA77720.1 - 1.3e-05 25.0 0.0 3.5e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 ABA77720.1 - 0.0009 19.0 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_39 PF14090.6 ABA77720.1 - 0.014 15.1 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 ABA77720.1 - 0.015 15.7 0.0 0.037 14.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 ABA77720.1 - 0.043 13.8 0.0 0.077 13.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_47 PF16221.5 ABA77720.1 - 0.051 13.1 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix TrmB PF01978.19 ABA77720.1 - 0.085 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.11 ABA77720.1 - 0.12 11.9 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain Cu-oxidase_4 PF02578.15 ABA77721.1 - 7.5e-71 238.4 0.2 8.4e-71 238.2 0.2 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase Methyltransf_28 PF02636.17 ABA77722.2 - 1.8e-66 224.5 0.0 2.4e-66 224.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase LGT PF01790.18 ABA77723.1 - 6e-71 238.5 6.7 6.7e-71 238.4 6.7 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase BMFP PF04380.13 ABA77724.1 - 8.6e-27 93.4 5.7 9.7e-27 93.3 5.7 1.0 1 0 0 1 1 1 1 Membrane fusogenic activity HH_signal PF01085.18 ABA77724.1 - 0.059 13.0 0.1 0.072 12.7 0.1 1.0 1 0 0 1 1 1 0 Hedgehog amino-terminal signalling domain STAS_2 PF13466.6 ABA77725.2 - 8.1e-18 64.5 9.9 9.1e-18 64.4 9.9 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 ABA77725.2 - 0.00027 20.6 0.0 0.00031 20.4 0.0 1.1 1 0 0 1 1 1 1 STAS domain DUF2597 PF10772.9 ABA77725.2 - 0.1 12.7 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2597) Response_reg PF00072.24 ABA77726.1 - 4.6e-25 88.0 0.0 5.1e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 ABA77727.2 - 1.1e-26 93.2 0.7 1.9e-26 92.4 0.7 1.4 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 ABA77727.2 - 4.7e-19 68.9 0.0 9.7e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 ABA77727.2 - 6.9e-17 61.5 0.1 6.9e-17 61.5 0.1 2.6 2 2 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.14 ABA77727.2 - 1.7e-12 47.5 0.3 4e-12 46.3 0.3 1.7 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain CheW PF01584.19 ABA77728.1 - 2.6e-26 91.9 0.1 2.9e-26 91.7 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 ABA77729.1 - 2.8e-29 101.5 0.1 3.6e-29 101.2 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain CheR PF01739.18 ABA77730.1 - 1.9e-63 213.5 0.0 2.4e-63 213.2 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 ABA77730.1 - 1.1e-11 44.3 0.0 2.9e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.6 ABA77730.1 - 7.3e-09 36.2 0.1 0.00019 22.0 0.0 2.6 2 1 1 3 3 3 2 Methyltransferase domain Methyltransf_11 PF08241.12 ABA77730.1 - 5.2e-08 33.4 0.0 3.2e-06 27.7 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA77730.1 - 2.2e-06 28.4 0.0 2.4e-05 25.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA77730.1 - 0.00029 20.7 0.0 0.00046 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA77730.1 - 0.00055 19.8 0.0 0.065 13.0 0.0 2.5 2 1 1 3 3 3 1 Methyltransferase domain CheB_methylest PF01339.17 ABA77731.1 - 2.2e-60 203.2 0.4 7.4e-60 201.5 0.2 1.8 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 ABA77731.1 - 3.5e-22 78.7 0.1 9.8e-22 77.2 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain LSDAT_euk PF18139.1 ABA77731.1 - 0.17 11.2 0.1 3.1 7.1 0.1 2.1 2 0 0 2 2 2 0 SLOG in TRPM MCPsignal PF00015.21 ABA77732.1 - 0.0089 15.8 13.0 0.037 13.8 3.0 3.4 2 2 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 ABA77732.1 - 0.017 15.4 3.4 1.4 9.2 0.3 4.2 4 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) RmuC PF02646.16 ABA77732.1 - 0.062 12.4 3.1 0.53 9.4 0.1 3.4 3 1 1 4 4 4 0 RmuC family HsbA PF12296.8 ABA77732.1 - 0.11 12.9 3.7 0.51 10.8 0.5 3.1 2 1 1 3 3 3 0 Hydrophobic surface binding protein A COG2 PF06148.11 ABA77732.1 - 0.12 12.4 1.3 6.1 6.9 0.2 3.5 2 2 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.12 ABA77732.1 - 0.13 12.3 2.4 1.7 8.7 0.8 3.2 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.11 ABA77732.1 - 0.17 12.4 0.7 4.1 8.0 0.1 3.4 3 1 0 3 3 3 0 Syntaxin 6, N-terminal GST_N_2 PF13409.6 ABA77733.1 - 2e-18 66.4 0.0 4.7e-18 65.2 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 ABA77733.1 - 1.6e-14 53.7 1.0 3.2e-14 52.7 1.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 ABA77733.1 - 1.2e-07 31.8 0.0 3.4e-07 30.4 0.1 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 ABA77733.1 - 6.8e-05 23.0 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 ABA77733.1 - 0.00051 19.8 0.0 0.00088 19.0 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 ABA77733.1 - 0.022 15.2 0.0 7.9 7.0 0.0 2.3 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain Sigma54_activat PF00158.26 ABA77734.1 - 5.1e-64 215.0 0.0 7.2e-64 214.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 ABA77734.1 - 8.4e-25 87.5 0.0 1.6e-24 86.6 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 ABA77734.1 - 2.5e-24 85.6 0.0 7.3e-24 84.1 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HTH_8 PF02954.19 ABA77734.1 - 4.2e-13 48.8 0.0 9.7e-13 47.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA PF00004.29 ABA77734.1 - 5.7e-05 23.5 0.0 0.00018 21.9 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA77734.1 - 0.0001 22.3 0.0 0.00021 21.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 ABA77734.1 - 0.00078 18.9 0.1 0.029 13.8 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_23 PF13384.6 ABA77734.1 - 0.0025 17.6 0.0 0.0056 16.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 ABA77734.1 - 0.0048 16.9 0.0 0.014 15.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 ABA77734.1 - 0.011 15.8 0.0 0.036 14.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 ABA77734.1 - 0.046 13.8 0.0 0.14 12.2 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_1 PF00126.27 ABA77734.1 - 0.051 13.5 0.0 0.16 12.0 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_17 PF12728.7 ABA77734.1 - 0.06 13.5 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_16 PF13191.6 ABA77734.1 - 0.081 13.3 0.1 0.36 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_2 PF07724.14 ABA77734.1 - 0.086 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) HTH_Tnp_1 PF01527.20 ABA77734.1 - 0.096 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 Transposase MCM PF00493.23 ABA77734.1 - 0.14 11.2 0.0 0.38 9.8 0.0 1.7 1 1 0 1 1 1 0 MCM P-loop domain HTH_30 PF13556.6 ABA77734.1 - 0.15 11.9 0.0 0.46 10.3 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Hpt PF01627.23 ABA77735.1 - 0.0035 17.6 6.8 0.58 10.4 6.8 2.4 1 1 0 1 1 1 1 Hpt domain HSCB_C PF07743.13 ABA77735.1 - 0.19 12.3 1.0 8.1 7.0 0.0 2.7 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain AMP-binding PF00501.28 ABA77736.2 - 8.4e-82 275.0 0.1 1.5e-81 274.2 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA77736.2 - 9.4e-22 77.8 0.3 2.4e-21 76.5 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 ABA77736.2 - 2e-18 66.1 4.4 2e-18 66.1 4.4 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus PTA_PTB PF01515.19 ABA77737.1 - 7.5e-75 252.2 0.0 1e-74 251.8 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 ABA77737.1 - 2.6e-25 89.3 0.1 7.5e-21 74.8 0.0 2.4 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 ABA77737.1 - 1.7e-22 80.0 0.2 5.3e-22 78.3 0.2 1.8 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Malate_DH PF12434.8 ABA77737.1 - 0.0031 17.5 1.1 0.0078 16.2 1.1 1.7 1 0 0 1 1 1 1 Malate dehydrogenase enzyme dCMP_cyt_deam_1 PF00383.23 ABA77738.1 - 2e-12 46.9 0.3 2.4e-12 46.6 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 ABA77738.1 - 2.8e-09 37.3 1.8 4.3e-09 36.7 1.8 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 ABA77738.1 - 1.1 8.8 6.0 1.7 8.2 0.8 2.0 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases Glycos_transf_3 PF00591.21 ABA77739.1 - 1.5e-41 142.6 3.7 2.1e-41 142.2 3.7 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 ABA77739.1 - 2.3e-18 65.6 0.3 5.2e-18 64.5 0.3 1.6 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 ABA77739.1 - 1.6e-16 59.9 0.7 4.7e-16 58.4 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain TMP_2 PF06791.13 ABA77739.1 - 2.7 7.6 11.9 0.13 12.0 5.0 2.2 2 1 0 2 2 2 0 Prophage tail length tape measure protein Metalloenzyme PF01676.18 ABA77740.1 - 1.8e-20 73.3 0.0 9.7e-20 71.0 0.0 1.9 1 1 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 ABA77740.1 - 0.05 13.0 0.0 2.2 7.6 0.0 2.6 2 1 1 3 3 3 0 Sulfatase A_deaminase PF00962.22 ABA77741.1 - 1.5e-66 225.0 0.0 1.8e-66 224.7 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase UPRTase PF14681.6 ABA77742.1 - 1.3e-71 240.4 0.0 1.4e-71 240.2 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 ABA77742.1 - 2.6e-09 36.8 0.0 2.4e-08 33.7 0.0 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase domain SPOR PF05036.13 ABA77743.1 - 1.3e-11 44.7 0.8 1.3e-11 44.7 0.8 2.7 3 0 0 3 3 3 1 Sporulation related domain AMP-binding PF00501.28 ABA77745.1 - 6.9e-90 301.7 0.1 8e-90 301.4 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA77745.1 - 1.1e-21 77.6 0.4 2.7e-21 76.3 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain EamA PF00892.20 ABA77746.1 - 6e-15 55.6 31.6 6.6e-10 39.3 12.9 2.4 2 1 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 ABA77746.1 - 0.028 13.9 2.1 1.6 8.1 0.3 2.2 2 0 0 2 2 2 0 Solute carrier family 35 Methyltransf_11 PF08241.12 ABA77747.1 - 1.9e-11 44.4 0.0 2.8e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA77747.1 - 2.8e-09 37.5 0.0 4.2e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA77747.1 - 2.5e-06 27.4 0.0 2.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA77747.1 - 0.0025 17.4 0.0 0.0046 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 ABA77747.1 - 0.0028 17.0 0.0 0.004 16.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 ABA77747.1 - 0.0093 15.6 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 ABA77747.1 - 0.028 14.2 0.0 0.05 13.4 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 ABA77747.1 - 0.15 12.8 0.0 0.25 12.1 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain DctM PF06808.12 ABA77748.1 - 9.4e-108 360.7 51.4 1.1e-107 360.4 51.4 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 ABA77748.1 - 1.5 7.9 67.0 2.8 7.1 32.5 2.4 1 1 1 2 2 2 0 Citrate transporter DctQ PF04290.12 ABA77749.1 - 1.2e-26 93.2 12.8 1.7e-26 92.7 12.8 1.2 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component IBV_3C PF03620.13 ABA77749.1 - 1.3 9.6 7.2 10 6.7 0.3 2.9 1 1 2 3 3 3 0 IBV 3C protein DctP PF03480.13 ABA77750.1 - 9.9e-62 208.9 0.0 1.2e-61 208.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DUF1456 PF07308.13 ABA77750.1 - 0.16 12.4 0.1 0.39 11.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1456) FCD PF07729.12 ABA77751.1 - 9.1e-20 71.3 2.6 9.1e-20 71.3 2.6 2.1 3 0 0 3 3 3 1 FCD domain GntR PF00392.21 ABA77751.1 - 4.7e-13 48.6 1.1 4.7e-13 48.6 1.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 ABA77751.1 - 5.2e-05 23.1 0.9 0.00055 19.9 0.2 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 ABA77751.1 - 6.3e-05 22.6 0.2 0.00041 20.0 0.1 2.3 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 ABA77751.1 - 0.0014 18.7 0.7 0.0063 16.5 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain RepL PF05732.11 ABA77751.1 - 0.0024 17.3 0.0 0.0042 16.5 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.12 ABA77751.1 - 0.011 15.7 0.0 0.073 13.0 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_IclR PF09339.10 ABA77751.1 - 0.015 15.1 0.0 0.054 13.3 0.0 2.0 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 ABA77751.1 - 0.016 15.1 0.0 0.044 13.7 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 ABA77751.1 - 0.027 14.6 0.3 0.2 11.9 0.0 2.5 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 ABA77751.1 - 0.18 12.0 2.5 0.41 10.9 0.4 2.6 2 1 0 2 2 2 0 PaaX-like protein Ribosomal_L12_N PF16320.5 ABA77751.1 - 2.4 7.9 5.7 0.63 9.8 0.8 2.5 3 0 0 3 3 3 0 Ribosomal protein L7/L12 dimerisation domain FCD PF07729.12 ABA77752.1 - 1.3e-17 64.4 12.8 1.3e-17 64.4 12.8 1.8 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 ABA77752.1 - 1.9e-16 59.5 0.7 1.5e-07 31.0 0.6 2.7 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 ABA77752.1 - 1.9e-08 34.1 0.0 0.00045 20.1 0.1 2.7 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 ABA77752.1 - 5e-07 29.4 5.3 0.017 14.9 0.0 3.3 3 0 0 3 3 3 2 IclR helix-turn-helix domain MarR_2 PF12802.7 ABA77752.1 - 8.1e-07 28.8 0.1 0.015 15.2 0.5 2.7 2 0 0 2 2 2 2 MarR family Fe_dep_repress PF01325.19 ABA77752.1 - 1.1e-06 28.7 0.0 0.0085 16.3 0.0 2.3 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 ABA77752.1 - 4.1e-05 23.4 0.0 0.25 11.3 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 ABA77752.1 - 7.1e-05 22.7 0.5 0.85 9.6 0.0 3.0 4 0 0 4 4 3 2 MarR family HTH_20 PF12840.7 ABA77752.1 - 0.00018 21.5 4.5 0.02 14.9 0.7 3.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA77752.1 - 0.0018 18.0 0.0 6.6 6.7 0.0 3.5 3 0 0 3 3 3 1 Homeodomain-like domain HTH_5 PF01022.20 ABA77752.1 - 0.002 18.0 0.0 1.5 8.8 0.1 3.0 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 ABA77752.1 - 0.0025 17.8 0.2 15 5.7 0.0 3.6 3 0 0 3 3 3 0 Winged helix-turn helix TFIIE_alpha PF02002.17 ABA77752.1 - 0.0025 17.6 0.0 0.12 12.2 0.0 2.4 2 0 0 2 2 2 1 TFIIE alpha subunit DprA_WH PF17782.1 ABA77752.1 - 0.0052 16.9 2.2 0.12 12.5 0.0 2.7 2 0 0 2 2 2 1 DprA winged helix domain HTH_DeoR PF08220.12 ABA77752.1 - 0.0071 16.1 0.0 0.57 10.0 0.0 2.4 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.6 ABA77752.1 - 0.0088 15.6 0.1 6 6.5 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding SgrR_N PF12793.7 ABA77752.1 - 0.021 15.0 0.0 0.049 13.8 0.0 1.6 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_11 PF08279.12 ABA77752.1 - 0.031 14.2 0.1 1 9.4 0.1 2.6 2 0 0 2 2 2 0 HTH domain HTH_28 PF13518.6 ABA77752.1 - 0.068 13.3 2.6 28 4.9 0.1 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain Rrf2 PF02082.20 ABA77752.1 - 0.088 13.2 0.0 0.82 10.1 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator DUF2250 PF10007.9 ABA77752.1 - 0.095 12.8 0.0 20 5.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.10 ABA77752.1 - 0.11 12.5 0.0 5.2 7.2 0.0 2.9 2 1 1 3 3 3 0 FeoC like transcriptional regulator CENP-B_N PF04218.13 ABA77752.1 - 0.17 11.5 0.0 7.6 6.3 0.0 2.4 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_17 PF12728.7 ABA77752.1 - 0.2 11.9 0.6 7.9 6.8 0.0 3.1 4 0 0 4 4 2 0 Helix-turn-helix domain ADH_N PF08240.12 ABA77753.1 - 2.1e-28 98.4 2.5 3.5e-28 97.7 2.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA77753.1 - 2.4e-07 30.8 1.0 7.9e-07 29.1 1.0 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 ABA77753.1 - 3.6e-05 23.4 0.9 6.2e-05 22.6 0.9 1.4 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 ABA77753.1 - 0.00097 18.5 3.7 0.0016 17.8 3.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 ABA77753.1 - 0.0022 17.9 0.4 0.0036 17.2 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NUDIX_5 PF16705.5 ABA77753.1 - 0.057 13.2 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 NUDIX, or N-terminal NPxY motif-rich, region of KRIT FAD_oxidored PF12831.7 ABA77753.1 - 0.74 9.1 3.8 1.1 8.6 3.8 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Mannitol_dh_C PF08125.13 ABA77754.1 - 3e-15 56.4 0.0 6.6e-15 55.3 0.0 1.5 1 1 0 1 1 1 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 ABA77754.1 - 6.6e-06 26.4 0.0 2.3e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Mannitol dehydrogenase Rossmann domain GD_AH_C PF04295.13 ABA77755.1 - 6.5e-151 502.6 0.0 7.6e-151 502.4 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 ABA77755.1 - 7.2e-11 42.6 0.6 2.5e-10 40.8 0.2 2.0 2 0 0 2 2 2 1 SAF domain HATPase_c PF02518.26 ABA77756.1 - 1.1e-17 64.5 0.0 1.7e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 ABA77756.1 - 7.9e-10 38.9 0.0 1.3e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Cache domain HATPase_c_2 PF13581.6 ABA77756.1 - 0.00022 21.1 0.0 0.00053 19.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 ABA77756.1 - 0.0022 18.0 0.4 0.0022 18.0 0.4 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF5401 PF17380.2 ABA77756.1 - 0.19 9.8 3.1 0.27 9.3 3.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) Sigma54_activat PF00158.26 ABA77757.1 - 4.2e-52 176.3 0.0 6e-52 175.7 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 ABA77757.1 - 4.9e-27 94.3 0.0 7.7e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 ABA77757.1 - 1e-21 77.5 0.0 2e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA77757.1 - 4.2e-11 42.5 0.6 1.5e-10 40.7 0.6 2.1 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 ABA77757.1 - 0.0005 20.1 0.0 0.00099 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 ABA77757.1 - 0.018 15.4 1.7 0.027 14.8 0.7 2.1 2 1 0 2 2 2 0 AAA ATPase domain HTH_50 PF18024.1 ABA77757.1 - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_2 PF07724.14 ABA77757.1 - 0.12 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) NMT1_3 PF16868.5 ABA77758.1 - 7.6e-98 327.5 0.9 8.8e-98 327.3 0.9 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 ABA77758.1 - 2.4e-05 24.4 0.0 4.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 ABA77758.1 - 0.0019 17.8 0.0 0.0032 17.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DctM PF06808.12 ABA77759.1 - 5e-84 282.5 61.4 1.2e-82 278.0 53.7 3.2 2 1 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 ABA77760.1 - 1.5e-23 82.9 0.0 1.8e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) HD PF01966.22 ABA77766.2 - 1.3e-08 35.1 0.1 2.8e-07 30.8 0.1 2.5 1 1 0 1 1 1 1 HD domain HD_assoc PF13286.6 ABA77766.2 - 0.00023 21.6 0.0 0.01 16.4 0.0 2.4 1 1 0 1 1 1 1 Phosphohydrolase-associated domain PolyA_pol PF01743.20 ABA77767.1 - 0.042 14.3 0.1 0.18 12.2 0.1 1.8 1 1 0 2 2 2 0 Poly A polymerase head domain Peptidase_M78 PF06114.13 ABA77768.1 - 1.6e-18 66.8 0.0 2.6e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain HTH_3 PF01381.22 ABA77768.1 - 3.6e-08 33.3 0.0 2.5e-06 27.4 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.6 ABA77768.1 - 4.9e-07 30.0 0.0 5.9e-06 26.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 ABA77768.1 - 3.5e-05 23.7 0.0 0.0043 17.0 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 ABA77768.1 - 0.0052 16.6 0.5 0.54 10.1 0.2 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 ABA77768.1 - 0.014 15.3 0.6 0.28 11.2 0.0 3.1 2 1 1 3 3 3 0 Helix-turn-helix domain DNAJ_related PF12339.8 ABA77768.1 - 0.023 14.9 0.1 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 DNA-J related protein DUF2268 PF10026.9 ABA77768.1 - 0.037 13.6 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) AP1AR PF15745.5 ABA77770.1 - 0.19 11.3 0.1 0.24 11.0 0.1 1.1 1 0 0 1 1 1 0 AP-1 complex-associated regulatory protein Peptidase_M15_4 PF13539.6 ABA77771.1 - 2.5e-07 31.1 0.1 5.2e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase PG_binding_1 PF01471.18 ABA77771.1 - 8.4e-06 25.9 0.1 0.016 15.4 0.0 2.3 2 0 0 2 2 2 2 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA77771.1 - 0.00017 21.7 0.7 0.26 11.6 0.1 2.2 2 0 0 2 2 2 2 Predicted Peptidoglycan domain ALF PF03752.13 ABA77771.1 - 0.032 14.2 2.5 0.032 14.2 2.5 2.4 3 0 0 3 3 3 0 Short repeats of unknown function PG_binding_2 PF08823.11 ABA77771.1 - 0.15 12.4 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain MethyltransfD12 PF02086.15 ABA77772.1 - 2e-15 57.2 0.0 3.4e-15 56.5 0.0 1.4 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase HWE_HK PF07536.14 ABA77773.1 - 2.3e-13 50.6 1.6 3.2e-13 50.2 0.3 1.9 2 0 0 2 2 2 1 HWE histidine kinase PAS_4 PF08448.10 ABA77773.1 - 8.2e-07 29.3 0.0 1.4e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 ABA77773.1 - 0.00045 20.2 0.0 0.001 19.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 ABA77773.1 - 0.00061 19.8 0.0 0.0012 18.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 ABA77773.1 - 0.0045 17.2 0.0 0.007 16.6 0.0 1.4 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 ABA77773.1 - 0.014 15.4 0.0 0.054 13.5 0.0 1.9 1 1 1 2 2 2 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 ABA77774.1 - 1.8e-10 40.9 0.0 2.2e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Phage_holin_3_3 PF16083.5 ABA77775.1 - 1.9e-12 47.1 1.3 1.9e-12 47.1 1.3 1.8 1 1 1 2 2 2 1 LydA holin phage, holin superfamily III Phage_holin_3_2 PF04550.12 ABA77775.1 - 0.049 14.2 1.0 0.062 13.8 1.0 1.2 1 0 0 1 1 1 0 Phage holin family 2 ArgoL1 PF08699.10 ABA77780.1 - 0.019 14.7 0.0 0.056 13.1 0.0 1.8 1 0 0 1 1 1 0 Argonaute linker 1 domain ZapB PF06005.12 ABA77780.1 - 0.055 13.9 0.4 29 5.2 0.0 3.3 2 1 0 2 2 2 0 Cell division protein ZapB ApoLp-III PF07464.11 ABA77780.1 - 0.2 11.8 1.8 5.3 7.1 0.1 3.8 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) CENP-F_leu_zip PF10473.9 ABA77780.1 - 5.1 7.1 6.1 4.6 7.3 0.0 3.5 4 0 0 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Phage_TTP_12 PF16461.5 ABA77783.1 - 4.6e-06 26.4 0.0 7.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Lambda phage tail tube protein, TTP DUF3168 PF11367.8 ABA77784.1 - 1.9e-20 73.2 0.1 2.2e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) HK97-gp10_like PF04883.12 ABA77786.1 - 2.5e-12 47.6 3.4 9.7e-12 45.7 0.0 2.1 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component DUF4051 PF13260.6 ABA77786.1 - 4 7.2 5.6 7.1 6.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) Phage_H_T_join PF05521.11 ABA77787.1 - 8.3e-17 61.5 0.0 9.4e-17 61.3 0.0 1.0 1 0 0 1 1 1 1 Phage head-tail joining protein Phage_connect_1 PF05135.13 ABA77788.1 - 0.00015 22.2 0.0 0.46 11.0 0.0 2.2 2 0 0 2 2 2 2 Phage gp6-like head-tail connector protein Phage_capsid PF05065.13 ABA77790.1 - 8.5e-61 205.7 0.1 8.5e-61 205.7 0.1 1.8 2 0 0 2 2 2 1 Phage capsid family HTH_8 PF02954.19 ABA77790.1 - 0.0043 16.8 0.1 0.015 15.0 0.1 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family TauE PF01925.19 ABA77791.1 - 1.4e-23 83.8 44.1 1.6e-23 83.6 44.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Peptidase_S49 PF01343.18 ABA77792.1 - 6e-17 62.0 0.5 1.6e-16 60.7 0.5 1.7 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 ABA77792.1 - 0.0019 18.1 0.3 0.0034 17.3 0.3 1.4 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 ABA77792.1 - 0.049 12.6 3.6 0.07 12.1 3.6 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Phage_portal PF04860.12 ABA77793.1 - 4.5e-63 213.3 0.0 5.4e-63 213.1 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein EamA PF00892.20 ABA77794.1 - 2.7e-13 50.3 37.8 4.9e-08 33.2 18.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family Mg_trans_NIPA PF05653.14 ABA77794.1 - 0.00088 18.5 3.0 0.00088 18.5 3.0 2.5 3 0 0 3 3 3 1 Magnesium transporter NIPA TMEM234 PF10639.9 ABA77794.1 - 0.0022 18.0 5.7 0.47 10.5 0.1 2.9 2 1 1 3 3 3 2 Putative transmembrane family 234 Multi_Drug_Res PF00893.19 ABA77794.1 - 0.021 15.5 13.7 0.026 15.2 9.2 3.2 2 1 0 2 2 2 0 Small Multidrug Resistance protein Terminase_1 PF03354.15 ABA77795.1 - 7.5e-168 558.9 0.0 8.6e-168 558.7 0.0 1.0 1 0 0 1 1 1 1 Phage Terminase Terminase_4 PF05119.12 ABA77796.1 - 5.7e-18 65.2 0.0 7.3e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Phage terminase, small subunit HNH PF01844.23 ABA77797.2 - 2.3e-10 40.5 0.0 3.7e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 HNH endonuclease HemY_N PF07219.13 ABA77797.2 - 0.63 10.3 8.3 0.91 9.7 8.3 1.2 1 0 0 1 1 1 0 HemY protein N-terminus DUF1376 PF07120.11 ABA77800.2 - 1.8e-06 28.1 0.0 3.1e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1376) DUF1937 PF09152.10 ABA77801.1 - 7.9e-47 158.8 0.1 9.9e-47 158.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1937) HTH_3 PF01381.22 ABA77802.1 - 1e-14 54.3 0.9 2.1e-14 53.3 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 ABA77802.1 - 1.2e-11 44.4 0.1 1.9e-11 43.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 ABA77802.1 - 1.1e-10 41.6 2.9 1.1e-10 41.6 2.9 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 ABA77802.1 - 7.6e-06 26.3 0.0 1e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 ABA77802.1 - 0.00016 21.5 0.1 0.00029 20.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 ABA77802.1 - 0.00029 20.6 0.7 0.001 18.8 0.7 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA77802.1 - 0.015 15.1 0.5 0.17 11.7 0.2 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_35 PF13693.6 ABA77802.1 - 0.025 14.6 0.1 0.043 13.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 ABA77802.1 - 0.29 10.7 3.4 2 8.0 0.6 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 RHH_1 PF01402.21 ABA77802.1 - 0.3 11.1 5.4 1.5 8.9 0.2 3.7 4 1 0 4 4 4 0 Ribbon-helix-helix protein, copG family Cadherin_C_2 PF16492.5 ABA77805.1 - 0.18 12.6 0.1 0.27 12.0 0.1 1.3 1 0 0 1 1 1 0 Cadherin cytoplasmic C-terminal DUF2312 PF10073.9 ABA77806.1 - 6.2e-29 99.5 2.0 8.2e-29 99.1 2.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) HTH_17 PF12728.7 ABA77809.1 - 6.5e-06 26.2 0.2 1.7e-05 24.9 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 ABA77809.1 - 0.11 12.3 2.2 4.2 7.2 2.2 2.2 1 1 0 1 1 1 0 MerR family regulatory protein HTH_8 PF02954.19 ABA77809.1 - 0.28 11.0 0.3 0.28 11.0 0.3 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Phage_integrase PF00589.22 ABA77810.2 - 1.6e-16 60.6 0.0 2.3e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Peripla_BP_1 PF00532.21 ABA77811.1 - 1.6e-20 73.7 0.0 2.3e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 ABA77811.1 - 3e-19 68.5 0.1 7.7e-19 67.2 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_3 PF13377.6 ABA77811.1 - 1.9e-18 67.3 0.0 1.8e-16 61.0 0.0 2.8 2 1 1 3 3 3 1 Periplasmic binding protein-like domain Peripla_BP_4 PF13407.6 ABA77811.1 - 1.3e-10 41.4 0.0 1.8e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_31 PF13560.6 ABA77811.1 - 0.00039 20.7 1.1 0.0014 19.0 1.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma54_DBD PF04552.13 ABA77811.1 - 0.0039 16.9 0.0 0.0068 16.1 0.0 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain HTH_23 PF13384.6 ABA77811.1 - 0.0076 16.0 0.1 0.09 12.6 0.0 2.8 2 1 1 3 3 3 1 Homeodomain-like domain HTH_AraC PF00165.23 ABA77811.1 - 0.026 14.6 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_35 PF13693.6 ABA77811.1 - 0.027 14.5 0.1 0.14 12.3 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 ABA77811.1 - 0.047 13.7 0.0 0.098 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix TrmB PF01978.19 ABA77811.1 - 0.056 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 ABA77811.1 - 0.069 13.0 0.0 0.61 9.9 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_r4 PF04545.16 ABA77811.1 - 0.074 12.6 0.3 0.26 10.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 NifZ PF04319.13 ABA77811.1 - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 NifZ domain HTH_24 PF13412.6 ABA77811.1 - 0.16 11.6 0.1 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3429 PF11911.8 ABA77812.1 - 2.1e-32 112.4 20.2 2.4e-32 112.2 20.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3429) LysE PF01810.18 ABA77813.1 - 6.8e-28 97.4 12.9 7.8e-28 97.3 12.9 1.0 1 0 0 1 1 1 1 LysE type translocator Gly_kinase PF02595.15 ABA77813.1 - 0.46 9.4 3.6 0.63 9.0 3.6 1.1 1 0 0 1 1 1 0 Glycerate kinase family LYTB PF02401.18 ABA77814.1 - 9.4e-86 287.3 0.0 1.1e-85 287.1 0.0 1.1 1 0 0 1 1 1 1 LytB protein NYN PF01936.18 ABA77815.1 - 1.3e-40 139.2 0.0 1.6e-40 139.0 0.0 1.0 1 0 0 1 1 1 1 NYN domain HPPK PF01288.20 ABA77816.1 - 1.3e-24 86.9 0.0 1.8e-24 86.4 0.0 1.2 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RNA_pol_Rpb6 PF01192.22 ABA77817.1 - 2e-14 53.2 0.4 5.3e-14 51.9 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb6 HD_4 PF13328.6 ABA77818.1 - 1.3e-48 164.7 0.8 2.7e-48 163.7 0.8 1.5 1 0 0 1 1 1 1 HD domain RelA_SpoT PF04607.17 ABA77818.1 - 1.5e-39 134.9 0.1 3.8e-39 133.6 0.1 1.7 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins TGS PF02824.21 ABA77818.1 - 8e-20 70.7 0.0 2.2e-19 69.3 0.0 1.8 1 0 0 1 1 1 1 TGS domain ACT_4 PF13291.6 ABA77818.1 - 5.1e-15 55.8 0.0 1.9e-14 54.0 0.0 2.0 1 0 0 1 1 1 1 ACT domain HD PF01966.22 ABA77818.1 - 5.2e-09 36.4 0.1 1.8e-08 34.6 0.1 2.0 1 0 0 1 1 1 1 HD domain ACT PF01842.25 ABA77818.1 - 0.0064 16.2 0.0 0.018 14.8 0.0 1.9 1 0 0 1 1 1 1 ACT domain DUF2062 PF09835.9 ABA77819.1 - 2.6e-36 124.7 6.1 3.6e-36 124.3 6.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) PdxJ PF03740.13 ABA77820.1 - 5.9e-95 316.8 0.4 6.6e-95 316.7 0.4 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthesis protein PdxJ AP_endonuc_2 PF01261.24 ABA77820.1 - 0.012 15.1 2.6 0.015 14.8 1.3 1.8 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel ACPS PF01648.20 ABA77821.1 - 1e-18 67.5 0.0 1.2e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily Peptidase_S24 PF00717.23 ABA77822.2 - 2.4e-20 72.3 0.0 4e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 ABA77822.2 - 1.9e-08 34.2 0.0 0.00054 19.8 0.0 2.4 2 1 0 2 2 2 2 Signal peptidase, peptidase S26 Ribonucleas_3_3 PF14622.6 ABA77823.1 - 3.6e-31 108.0 0.1 6.6e-31 107.1 0.0 1.4 2 0 0 2 2 2 1 Ribonuclease-III-like dsrm PF00035.26 ABA77823.1 - 1.5e-12 48.0 0.0 2.3e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Double-stranded RNA binding motif Ribonuclease_3 PF00636.26 ABA77823.1 - 2.8e-12 47.2 0.1 4.8e-12 46.4 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease III domain DND1_DSRM PF14709.7 ABA77823.1 - 0.00017 21.8 0.0 0.00043 20.5 0.0 1.7 1 1 0 1 1 1 1 double strand RNA binding domain from DEAD END PROTEIN 1 PALP PF00291.25 ABA77823.1 - 0.0069 15.8 0.2 0.014 14.9 0.0 1.6 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme MMR_HSR1 PF01926.23 ABA77824.1 - 2.6e-21 75.8 0.0 4.3e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase KH_2 PF07650.17 ABA77824.1 - 1.4e-16 60.0 0.1 4.3e-16 58.5 0.0 1.9 2 0 0 2 2 2 1 KH domain FeoB_N PF02421.18 ABA77824.1 - 6.7e-11 41.9 0.0 1.2e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 ABA77824.1 - 3.9e-10 39.6 0.1 7.4e-08 32.2 0.1 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 ABA77824.1 - 1.8e-08 34.6 0.1 0.00035 20.7 0.1 2.6 3 0 0 3 3 3 2 Dynamin family PduV-EutP PF10662.9 ABA77824.1 - 1.5e-06 28.0 0.0 4.6e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 ABA77824.1 - 2.5e-06 27.5 0.1 0.0033 17.3 0.1 2.3 1 1 1 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 ABA77824.1 - 2e-05 24.9 0.0 3.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AIG1 PF04548.16 ABA77824.1 - 0.00016 21.1 0.0 0.00024 20.5 0.0 1.2 1 0 0 1 1 1 1 AIG1 family cobW PF02492.19 ABA77824.1 - 0.0013 18.4 0.1 0.1 12.2 0.0 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 ABA77824.1 - 0.0058 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 ABA77824.1 - 0.011 16.0 0.0 0.032 14.5 0.0 1.9 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 ABA77824.1 - 0.012 16.2 0.0 0.047 14.2 0.0 1.9 2 0 0 2 2 2 0 ABC transporter KH_1 PF00013.29 ABA77824.1 - 0.068 13.0 0.1 0.2 11.5 0.1 1.8 1 0 0 1 1 1 0 KH domain AAA_29 PF13555.6 ABA77824.1 - 0.096 12.4 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ras PF00071.22 ABA77824.1 - 0.13 11.8 0.0 0.31 10.6 0.0 1.6 1 1 0 1 1 1 0 Ras family Arf PF00025.21 ABA77824.1 - 0.14 11.6 0.0 0.63 9.5 0.0 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family DUF1491 PF07372.12 ABA77825.1 - 9.9e-36 122.3 0.3 1.1e-35 122.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1491) RecO_C PF02565.15 ABA77826.1 - 2.9e-21 75.9 0.2 4.5e-21 75.3 0.2 1.4 1 0 0 1 1 1 1 Recombination protein O C terminal RecO_N PF11967.8 ABA77826.1 - 1.1e-17 63.8 0.0 1.6e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Recombination protein O N terminal Acyl-CoA_dh_1 PF00441.24 ABA77827.2 - 4.8e-42 143.7 13.4 7.9e-42 143.0 9.0 2.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 ABA77827.2 - 8.4e-32 110.2 0.2 8.4e-32 110.2 0.2 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 ABA77827.2 - 1e-18 67.3 0.1 1.9e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 ABA77827.2 - 1.5e-13 51.2 4.3 1.5e-13 51.2 4.3 2.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain PEPCK_ATP PF01293.20 ABA77828.1 - 6.4e-213 707.6 0.0 7.3e-213 707.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Response_reg PF00072.24 ABA77829.1 - 8.4e-29 100.0 0.5 1.2e-28 99.5 0.5 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA77829.1 - 5.8e-22 77.6 1.0 8.2e-22 77.1 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Sensor_TM1 PF13755.6 ABA77830.1 - 4.8e-27 93.5 1.7 1.1e-26 92.3 1.7 1.6 1 0 0 1 1 1 1 Sensor N-terminal transmembrane domain HATPase_c PF02518.26 ABA77830.1 - 9.3e-20 71.2 0.0 1.7e-19 70.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA77830.1 - 2e-13 50.2 3.2 4.1e-13 49.2 1.8 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 ABA77830.1 - 0.0013 19.1 3.8 0.025 15.0 0.1 3.2 3 0 0 3 3 3 1 HAMP domain HATPase_c_2 PF13581.6 ABA77830.1 - 0.027 14.4 0.2 0.089 12.8 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 ABA77830.1 - 0.037 13.9 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 GHKL domain DUF5112 PF17139.4 ABA77830.1 - 0.046 13.2 0.1 0.068 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5112) GAF PF01590.26 ABA77830.1 - 0.13 12.9 0.0 0.38 11.4 0.0 1.8 1 0 0 1 1 1 0 GAF domain Hpr_kinase_C PF07475.12 ABA77831.1 - 3.9e-19 68.8 0.0 5.1e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_16 PF13191.6 ABA77831.1 - 4.4e-05 23.9 0.1 5e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA77831.1 - 0.00093 18.9 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 ABA77831.1 - 0.0065 15.9 0.1 0.0092 15.4 0.1 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 ABA77831.1 - 0.0081 15.4 0.2 0.011 15.0 0.2 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 ABA77831.1 - 0.009 16.2 0.0 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 ABA77831.1 - 0.04 13.6 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 ABA77831.1 - 0.062 13.3 0.1 0.095 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA77831.1 - 0.077 13.3 0.0 0.084 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA77831.1 - 0.083 13.4 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 ABA77831.1 - 0.11 13.0 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA77831.1 - 0.16 11.6 0.5 0.21 11.1 0.1 1.5 2 0 0 2 2 2 0 AAA domain ATP_bind_2 PF03668.15 ABA77832.1 - 8.4e-82 274.6 0.0 9.7e-82 274.4 0.0 1.0 1 0 0 1 1 1 1 P-loop ATPase protein family AAA_18 PF13238.6 ABA77832.1 - 0.00021 21.8 0.0 0.0007 20.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 ABA77832.1 - 0.0022 18.3 0.1 0.0094 16.2 0.0 2.0 3 0 0 3 3 3 1 AAA domain Rad17 PF03215.15 ABA77832.1 - 0.0039 17.1 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain T2SSE PF00437.20 ABA77832.1 - 0.0065 15.6 0.0 0.0096 15.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.6 ABA77832.1 - 0.025 14.8 0.1 5.8 7.1 0.0 2.6 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 ABA77832.1 - 0.028 14.8 0.1 0.062 13.7 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 ABA77832.1 - 0.042 14.1 0.0 0.098 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 ABA77832.1 - 0.045 13.3 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA77832.1 - 0.066 13.7 0.0 0.092 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 ABA77832.1 - 0.11 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IIGP PF05049.13 ABA77832.1 - 0.11 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_30 PF13604.6 ABA77832.1 - 0.12 12.1 0.0 0.3 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain EIIA-man PF03610.16 ABA77833.1 - 1.4e-21 76.8 0.1 1.8e-21 76.6 0.1 1.1 1 0 0 1 1 1 1 PTS system fructose IIA component PTS-HPr PF00381.19 ABA77834.1 - 5e-19 68.3 1.7 5.5e-19 68.2 1.7 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site Acyl_transf_3 PF01757.22 ABA77835.1 - 6.2e-23 81.4 25.6 1.1e-22 80.5 25.6 1.4 1 1 0 1 1 1 1 Acyltransferase family 3HCDH_N PF02737.18 ABA77836.1 - 9e-60 201.6 0.2 1.2e-59 201.3 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 ABA77836.1 - 3.8e-33 114.0 0.0 9e-33 112.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 ABA77836.1 - 9.2e-06 25.9 0.5 1.9e-05 24.9 0.3 1.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 ABA77836.1 - 0.0011 19.5 1.3 0.0041 17.7 1.3 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short_C2 PF13561.6 ABA77836.1 - 0.0038 16.8 0.1 0.0051 16.4 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase 2-Hacid_dh_C PF02826.19 ABA77836.1 - 0.0081 15.5 0.5 0.017 14.5 0.5 1.7 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 ABA77836.1 - 0.021 14.5 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 ABA77836.1 - 0.06 12.9 0.0 0.089 12.4 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF3523 PF12037.8 ABA77836.1 - 0.069 12.5 0.6 0.098 12.0 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3523) Phage_TAC_12 PF12363.8 ABA77836.1 - 0.075 13.5 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 1 0 Phage tail assembly chaperone protein, TAC adh_short PF00106.25 ABA77836.1 - 0.079 12.4 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_7 PF13241.6 ABA77836.1 - 0.082 13.3 0.1 0.14 12.6 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 ABA77836.1 - 0.15 12.0 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 ABA77836.1 - 1.3 8.9 3.8 2.8 7.8 0.7 2.6 2 1 1 3 3 3 0 Rossmann-like domain ETF_alpha PF00766.19 ABA77838.1 - 4.4e-38 129.2 0.7 4.4e-38 129.2 0.7 2.5 3 0 0 3 3 3 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 ABA77838.1 - 2e-32 112.5 15.1 3e-32 112.0 15.1 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 ABA77839.1 - 2.5e-45 154.6 6.6 3.3e-45 154.2 6.6 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Cob_adeno_trans PF01923.18 ABA77840.1 - 4.8e-60 202.4 0.1 5.5e-60 202.2 0.1 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HIG_1_N PF04588.13 ABA77841.1 - 1.1e-11 44.8 6.3 1.4e-11 44.4 6.3 1.2 1 0 0 1 1 1 1 Hypoxia induced protein conserved region DUF4293 PF14126.6 ABA77841.1 - 0.046 14.0 1.4 0.058 13.6 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF4307 PF14155.6 ABA77841.1 - 0.59 10.0 5.9 2.6 7.9 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF2116 PF09889.9 ABA77841.1 - 1.2 9.1 6.6 1.5 8.8 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) ETRAMP PF09716.10 ABA77841.1 - 1.3 9.1 3.3 8.6 6.5 1.0 2.0 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) adh_short PF00106.25 ABA77842.1 - 1.5e-43 148.6 0.0 1.9e-43 148.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA77842.1 - 5.9e-32 111.1 0.0 7.5e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA77842.1 - 8.8e-07 29.0 0.0 1.6e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 ABA77842.1 - 3.6e-05 23.7 0.0 7.5e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 ABA77842.1 - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA77842.1 - 0.025 13.7 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 ABA77842.1 - 0.046 13.3 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family Eno-Rase_NADH_b PF12242.8 ABA77842.1 - 0.064 13.0 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF1776 PF08643.10 ABA77842.1 - 0.074 12.4 0.0 0.17 11.2 0.0 1.7 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) TrkA_N PF02254.18 ABA77842.1 - 0.11 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain SH3_3 PF08239.11 ABA77843.2 - 1.1e-09 38.4 0.0 5e-09 36.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial SH3 domain SH3_4 PF06347.13 ABA77843.2 - 0.00022 21.0 0.2 0.0013 18.6 0.1 2.2 2 0 0 2 2 2 1 Bacterial SH3 domain DNA_topoisoIV PF00521.20 ABA77844.1 - 8.6e-138 459.8 0.0 1.1e-137 459.5 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 ABA77844.1 - 9.1e-12 44.3 0.0 3.3e-05 23.3 0.0 3.6 3 0 0 3 3 3 3 DNA gyrase C-terminal domain, beta-propeller GTP_EFTU PF00009.27 ABA77846.1 - 2e-55 187.4 0.0 2.5e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 ABA77846.1 - 3.9e-33 114.1 1.4 5.6e-33 113.6 0.0 2.0 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 ABA77846.1 - 2.9e-17 62.8 3.4 6.3e-17 61.7 3.4 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 ABA77846.1 - 1.8e-05 24.8 0.0 3.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 ABA77846.1 - 0.17 11.5 0.1 0.34 10.5 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Hexapep PF00132.24 ABA77847.1 - 4.2e-09 35.8 9.1 6.8e-09 35.1 4.6 2.8 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA77847.1 - 0.0001 22.0 2.0 0.0001 22.0 2.0 1.6 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase HCV_core PF01542.18 ABA77847.1 - 0.044 14.2 0.0 0.11 12.9 0.0 1.7 1 0 0 1 1 1 0 Hepatitis C virus core protein SecE PF00584.20 ABA77848.1 - 9.8e-17 60.6 1.8 1.1e-16 60.5 1.8 1.0 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex NusG PF02357.19 ABA77849.1 - 2.9e-22 79.0 0.1 4.1e-22 78.5 0.1 1.2 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 ABA77849.1 - 2.5e-09 36.8 0.2 5.9e-09 35.6 0.2 1.7 1 0 0 1 1 1 1 KOW motif Ribosomal_L11_N PF03946.14 ABA77850.1 - 1.1e-28 98.9 0.2 2e-28 98.0 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 ABA77850.1 - 2.8e-26 91.8 1.1 5.3e-26 90.9 1.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 ABA77851.1 - 3.3e-56 190.3 0.0 4e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 ABA77852.1 - 1.6e-25 89.1 0.1 2.2e-25 88.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L10 TMP_2 PF06791.13 ABA77852.1 - 3e-05 23.8 0.9 3e-05 23.8 0.9 1.6 1 1 1 2 2 2 1 Prophage tail length tape measure protein DIOX_N PF14226.6 ABA77852.1 - 0.12 13.1 0.1 0.2 12.4 0.1 1.4 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal Ribosomal_L12 PF00542.19 ABA77853.1 - 2.2e-28 98.4 11.2 2.2e-28 98.4 11.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 ABA77853.1 - 1e-13 50.7 3.6 1e-13 50.7 3.6 2.8 3 0 0 3 3 3 2 Ribosomal protein L7/L12 dimerisation domain 5_3_exonuc PF01367.20 ABA77853.1 - 0.014 16.0 1.5 0.024 15.3 1.5 1.4 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Cdd1 PF11731.8 ABA77853.1 - 0.04 14.1 0.3 0.12 12.6 0.1 1.8 2 0 0 2 2 2 0 Pathogenicity locus RNA_pol_Rpb2_6 PF00562.28 ABA77854.1 - 2.4e-163 543.7 0.0 7.4e-163 542.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 ABA77854.1 - 2.7e-34 118.5 0.0 6.2e-34 117.3 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 ABA77854.1 - 4e-32 110.2 0.0 7.5e-32 109.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 ABA77854.1 - 4.1e-26 91.8 0.0 2.7e-18 66.3 0.1 2.3 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 ABA77854.1 - 7.3e-26 90.4 0.3 1.6e-25 89.3 0.1 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_45 PF10385.9 ABA77854.1 - 2e-24 85.6 0.1 1.1e-23 83.2 0.3 2.3 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 ABA77855.1 - 4.1e-90 302.3 0.0 6.6e-90 301.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 ABA77855.1 - 1.8e-74 250.5 0.4 5.5e-74 249.0 0.1 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 ABA77855.1 - 2.7e-37 128.6 0.0 2.9e-26 92.7 0.0 2.6 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 ABA77855.1 - 1.7e-22 80.0 0.0 4.5e-22 78.7 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 ABA77855.1 - 5.5e-17 61.7 0.1 1.3e-16 60.5 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Biotin_lipoyl_2 PF13533.6 ABA77855.1 - 5.2e-07 29.4 0.4 0.23 11.3 0.0 3.9 3 0 0 3 3 3 3 Biotin-lipoyl like Peptidase_M23 PF01551.22 ABA77855.1 - 0.00088 19.4 0.0 6.1 7.1 0.0 3.6 3 0 0 3 3 3 2 Peptidase family M23 QRPTase_N PF02749.16 ABA77855.1 - 0.038 14.0 0.0 8.4 6.5 0.0 3.6 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain Biotin_lipoyl PF00364.22 ABA77855.1 - 0.056 13.3 0.2 24 4.9 0.0 3.7 3 0 0 3 3 3 0 Biotin-requiring enzyme Ribosomal_L27 PF01016.19 ABA77855.1 - 0.057 13.4 0.3 1 9.4 0.1 2.9 2 1 0 2 2 2 0 Ribosomal L27 protein Fer2 PF00111.27 ABA77855.1 - 1.8 8.6 3.8 6.4 6.8 0.1 2.6 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain EamA PF00892.20 ABA77856.1 - 2e-14 53.9 31.9 4.7e-10 39.8 11.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF2061 PF09834.9 ABA77856.1 - 4.2 8.0 10.2 0.2 12.2 1.1 3.2 2 1 1 3 3 3 0 Predicted membrane protein (DUF2061) Ribosom_S12_S23 PF00164.25 ABA77857.1 - 2.8e-42 142.9 1.8 3.2e-42 142.7 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S12 PF17487.2 ABA77857.1 - 0.14 12.9 0.0 0.24 12.2 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein S12 Ribosomal_S7 PF00177.21 ABA77858.1 - 2.2e-66 222.1 5.2 2.4e-66 221.9 5.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Mak_N_cap PF18085.1 ABA77858.1 - 0.044 14.8 0.1 0.08 14.0 0.1 1.5 1 1 0 1 1 1 0 Maltokinase N-terminal cap domain Nup153 PF08604.10 ABA77858.1 - 0.11 11.3 0.2 0.11 11.2 0.2 1.1 1 0 0 1 1 1 0 Nucleoporin Nup153-like GTP_EFTU PF00009.27 ABA77859.1 - 1.3e-66 223.8 0.0 2e-66 223.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 ABA77859.1 - 1.2e-44 150.9 0.1 2.6e-44 149.9 0.1 1.6 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 ABA77859.1 - 2.4e-33 114.0 0.1 6e-33 112.8 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 ABA77859.1 - 1.8e-28 98.4 0.0 4e-28 97.3 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 ABA77859.1 - 1.9e-17 63.4 0.5 6e-17 61.8 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RF3_C PF16658.5 ABA77859.1 - 0.00012 21.9 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 ABA77859.1 - 0.0077 16.3 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 ABA77860.1 - 2e-55 187.4 0.0 2.5e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 ABA77860.1 - 3.9e-33 114.1 1.4 5.6e-33 113.6 0.0 2.0 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 ABA77860.1 - 2.9e-17 62.8 3.4 6.3e-17 61.7 3.4 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 ABA77860.1 - 1.8e-05 24.8 0.0 3.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 ABA77860.1 - 0.17 11.5 0.1 0.34 10.5 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S10 PF00338.22 ABA77861.1 - 5.6e-36 122.7 0.0 6.2e-36 122.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L3 PF00297.22 ABA77862.1 - 1.3e-14 54.0 3.9 8.1e-12 44.8 2.1 2.2 1 1 1 2 2 2 2 Ribosomal protein L3 Ribosomal_L4 PF00573.22 ABA77863.1 - 3.3e-62 209.6 0.2 3.7e-62 209.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 ABA77864.1 - 6.7e-30 103.3 6.2 7.6e-30 103.1 6.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 Rieske_2 PF13806.6 ABA77864.1 - 0.03 14.2 0.1 0.034 14.1 0.1 1.1 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain Ribosomal_L2_C PF03947.18 ABA77865.1 - 7.2e-57 191.0 3.4 1.3e-56 190.2 3.4 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 ABA77865.1 - 2e-31 107.8 0.1 6.1e-31 106.2 0.1 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 ABA77866.1 - 1.8e-35 120.7 0.1 2e-35 120.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 SPG4 PF17325.2 ABA77866.1 - 0.094 13.8 0.7 0.12 13.5 0.3 1.4 2 0 0 2 2 2 0 Stationary phase protein 4 Ribosomal_L22 PF00237.19 ABA77867.1 - 6.5e-32 109.8 0.1 7.4e-32 109.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e KORA PF16509.5 ABA77867.1 - 0.047 14.0 0.0 0.072 13.4 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Caenor_Her-1 PF09232.10 ABA77867.1 - 0.15 12.2 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Caenorhabditis elegans Her-1 Ribosomal_S3_C PF00189.20 ABA77868.1 - 7.7e-40 135.3 0.9 1.4e-39 134.5 0.9 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 ABA77868.1 - 1.4e-18 66.5 0.6 2.6e-18 65.6 0.6 1.5 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 ABA77868.1 - 0.0035 17.2 0.0 0.0073 16.2 0.0 1.5 1 0 0 1 1 1 1 KH domain DNA_pol3_a_NI PF14480.6 ABA77868.1 - 0.03 14.3 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus I SLD3 PF08639.10 ABA77868.1 - 0.12 11.1 0.1 0.15 10.7 0.1 1.1 1 0 0 1 1 1 0 DNA replication regulator SLD3 MRP-S24 PF14955.6 ABA77868.1 - 0.15 12.0 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S24 Ribosomal_L16 PF00252.18 ABA77869.1 - 2.6e-49 166.6 1.0 2.9e-49 166.4 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_L29 PF00831.23 ABA77870.1 - 4.9e-26 90.5 3.1 5.9e-26 90.2 3.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.13 ABA77870.1 - 0.021 14.9 0.3 0.035 14.2 0.3 1.3 1 1 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) Ribosomal_S17 PF00366.20 ABA77871.1 - 1.1e-30 105.5 1.9 1.3e-30 105.3 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S17 EXOSC1 PF10447.9 ABA77871.1 - 0.0019 18.8 0.1 0.0024 18.5 0.1 1.1 1 0 0 1 1 1 1 Exosome component EXOSC1/CSL4 Ribosomal_L21e PF01157.18 ABA77871.1 - 0.045 13.6 0.2 2.8 7.9 0.1 2.1 1 1 0 2 2 2 0 Ribosomal protein L21e NHase_beta PF02211.15 ABA77871.1 - 0.14 12.2 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Nitrile hydratase beta subunit Ribosomal_L14 PF00238.19 ABA77872.1 - 1.6e-56 189.6 2.9 1.8e-56 189.5 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e ribosomal_L24 PF17136.4 ABA77873.1 - 6.1e-18 65.0 0.3 1.4e-17 63.8 0.0 1.8 2 1 0 2 2 2 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 KOW PF00467.29 ABA77873.1 - 8.2e-07 28.8 2.3 1.5e-06 28.0 2.3 1.4 1 0 0 1 1 1 1 KOW motif GTP_EFTU_D2 PF03144.25 ABA77873.1 - 0.024 15.0 0.4 0.04 14.3 0.4 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 2 Arteri_nsp7a PF16749.5 ABA77873.1 - 0.075 13.2 0.2 0.11 12.7 0.2 1.3 1 0 0 1 1 1 0 Arterivirus nonstructural protein 7 alpha Ribosomal_L5_C PF00673.21 ABA77874.1 - 4.9e-41 138.8 0.0 1e-40 137.8 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 ABA77874.1 - 1.3e-25 89.5 0.8 2.1e-25 88.8 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 ABA77875.1 - 7e-26 89.7 0.2 1.3e-25 88.9 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_S8 PF00410.19 ABA77876.1 - 1.1e-46 157.9 0.0 1.2e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 RNA_pol_Rpc34 PF05158.12 ABA77876.1 - 0.1 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Ribosomal_L6 PF00347.23 ABA77877.1 - 8.1e-38 129.0 1.4 4.9e-21 75.2 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L18p PF00861.22 ABA77878.1 - 1.1e-39 135.4 1.1 1.2e-39 135.2 1.1 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 ABA77879.1 - 2.2e-29 100.7 0.1 3.4e-29 100.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 ABA77879.1 - 2e-28 98.2 4.3 3.3e-28 97.5 4.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 ABA77880.1 - 4.4e-16 58.5 0.3 4.9e-16 58.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 ABA77881.1 - 1.7e-37 129.0 1.9 2.1e-37 128.6 1.9 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 ABA77882.1 - 7.5e-112 373.5 15.8 9.5e-112 373.2 15.8 1.1 1 0 0 1 1 1 1 SecY translocase DUF485 PF04341.12 ABA77882.1 - 3.1 7.8 8.3 0.58 10.2 0.7 3.2 3 0 0 3 3 3 0 Protein of unknown function, DUF485 ADK PF00406.22 ABA77883.1 - 1.6e-53 180.9 0.0 1.9e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 ABA77883.1 - 4.6e-21 75.7 0.8 5.7e-21 75.4 0.2 1.4 2 0 0 2 2 1 1 AAA domain ADK_lid PF05191.14 ABA77883.1 - 1.8e-11 43.8 3.5 2.8e-11 43.2 3.5 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.6 ABA77883.1 - 1.5e-07 31.7 0.0 2.4e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 ABA77883.1 - 8.7e-06 26.3 0.0 2e-05 25.2 0.0 1.5 2 0 0 2 2 2 1 AAA domain TF_Zn_Ribbon PF08271.12 ABA77883.1 - 0.011 15.2 0.4 0.91 9.1 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding AAA_28 PF13521.6 ABA77883.1 - 0.012 15.9 0.0 0.036 14.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA77883.1 - 0.025 14.0 0.1 0.036 13.4 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Cytidylate_kin PF02224.18 ABA77883.1 - 0.028 14.1 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase Zn-ribbon_8 PF09723.10 ABA77883.1 - 0.031 14.4 1.1 0.058 13.5 1.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_5 PF07728.14 ABA77883.1 - 0.12 12.4 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA77883.1 - 0.17 12.2 0.0 0.41 10.9 0.0 1.7 2 1 0 2 2 2 0 AAA domain zf-RRN7 PF11781.8 ABA77883.1 - 0.28 10.9 2.9 2.5 7.9 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 ABA77883.1 - 2.9 7.7 4.9 32 4.4 5.0 2.1 1 1 0 1 1 1 0 Rubredoxin metal binding domain Ribosomal_S13 PF00416.22 ABA77884.1 - 1.8e-33 115.7 4.8 9e-32 110.2 4.8 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 Ribosomal_S11 PF00411.19 ABA77885.1 - 3.3e-50 169.1 0.9 4e-50 168.8 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 ABA77885.1 - 0.053 13.9 0.3 0.07 13.5 0.3 1.3 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LPD7 PF18821.1 ABA77885.1 - 0.056 13.6 0.1 0.14 12.3 0.1 1.6 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 7 ELFV_dehydrog PF00208.21 ABA77885.1 - 0.058 13.1 0.7 0.069 12.9 0.1 1.4 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RNA_pol_A_CTD PF03118.15 ABA77886.1 - 1.8e-25 88.4 0.5 3.5e-25 87.5 0.5 1.5 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.24 ABA77886.1 - 2.6e-24 84.4 0.0 4.4e-24 83.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_bac PF01000.26 ABA77886.1 - 1.4e-21 76.9 0.0 3e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain DUF211 PF02680.14 ABA77886.1 - 0.0015 18.7 0.3 0.23 11.7 0.1 2.5 2 0 0 2 2 2 1 Uncharacterized ArCR, COG1888 RNA_pol_L_2 PF13656.6 ABA77886.1 - 0.02 14.6 0.0 1.8 8.4 0.0 2.6 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L17 PF01196.19 ABA77887.1 - 2.1e-35 121.5 0.0 2.1e-35 121.5 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L17 Autoind_bind PF03472.15 ABA77888.1 - 3.6e-14 52.5 0.8 4.6e-14 52.1 0.3 1.5 2 0 0 2 2 2 1 Autoinducer binding domain GerE PF00196.19 ABA77888.1 - 9e-06 25.1 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_1 PF00126.27 ABA77888.1 - 0.00079 19.3 1.0 0.00079 19.3 1.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF1897 PF09005.10 ABA77888.1 - 1.5 8.3 5.8 3.1 7.4 1.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1897) Trypsin_2 PF13365.6 ABA77889.1 - 2.3e-33 116.2 3.3 4.4e-33 115.3 3.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 ABA77889.1 - 1.3e-18 67.0 0.0 9.2e-12 45.1 0.0 2.8 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 ABA77889.1 - 1.3e-14 53.7 5.1 3.3e-06 26.9 0.1 3.8 4 0 0 4 4 4 2 PDZ domain Trypsin PF00089.26 ABA77889.1 - 7.2e-13 48.8 0.0 1.3e-12 48.0 0.0 1.4 1 0 0 1 1 1 1 Trypsin PDZ PF00595.24 ABA77889.1 - 2e-08 34.4 0.0 0.0026 18.1 0.0 3.1 3 0 0 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.6 ABA77889.1 - 0.0036 17.2 6.8 0.64 10.0 0.0 4.1 5 0 0 5 5 5 2 Tricorn protease PDZ domain Peptidase_S46 PF10459.9 ABA77889.1 - 0.0076 15.0 0.2 1.7 7.2 0.4 2.3 2 0 0 2 2 2 2 Peptidase S46 MgsA_C PF12002.8 ABA77890.1 - 1.6e-68 229.9 0.0 2.3e-68 229.4 0.0 1.2 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal AAA_assoc_2 PF16193.5 ABA77890.1 - 1.5e-20 73.3 0.0 3.4e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 AAA C-terminal domain AAA PF00004.29 ABA77890.1 - 1.4e-15 57.9 0.0 2.4e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 ABA77890.1 - 1.1e-14 54.5 0.0 2e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 ABA77890.1 - 1.4e-07 31.6 0.1 1.7e-06 28.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 ABA77890.1 - 2.7e-06 28.0 0.0 6.5e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA77890.1 - 1.3e-05 25.7 1.1 0.001 19.5 0.9 2.9 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 ABA77890.1 - 1.8e-05 24.5 0.0 0.0052 16.5 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 ABA77890.1 - 1.9e-05 25.0 0.1 0.0066 16.7 0.0 2.8 1 1 2 3 3 3 1 AAA domain AAA_14 PF13173.6 ABA77890.1 - 5.9e-05 23.1 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 ABA77890.1 - 0.00022 21.1 0.0 0.00068 19.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 ABA77890.1 - 0.00027 21.1 0.0 0.00046 20.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 ABA77890.1 - 0.00077 18.9 0.1 0.19 11.1 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 ABA77890.1 - 0.00082 19.1 0.1 0.0091 15.7 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.6 ABA77890.1 - 0.0019 18.4 0.2 0.0092 16.2 0.0 2.4 3 1 0 3 3 2 1 AAA domain SKI PF01202.22 ABA77890.1 - 0.0019 18.4 0.0 0.066 13.3 0.0 2.6 3 0 0 3 3 2 1 Shikimate kinase AAA_30 PF13604.6 ABA77890.1 - 0.0047 16.7 0.4 0.27 11.0 0.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 ABA77890.1 - 0.01 16.3 0.0 0.046 14.2 0.0 2.0 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 ABA77890.1 - 0.019 14.7 0.1 0.039 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 ABA77890.1 - 0.035 14.1 0.0 2.3 8.2 0.0 2.3 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Rad17 PF03215.15 ABA77890.1 - 0.054 13.4 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Tugs PF17840.1 ABA77890.1 - 0.058 13.6 0.9 0.15 12.2 0.5 1.9 2 0 0 2 2 1 0 Tethering Ubl4a to BAGS domain RNA_helicase PF00910.22 ABA77890.1 - 0.06 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 ABA77890.1 - 0.078 12.9 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 ABA77890.1 - 0.08 13.5 0.0 0.3 11.6 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Cytidylate_kin PF02224.18 ABA77890.1 - 0.081 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA_19 PF13245.6 ABA77890.1 - 0.089 13.1 0.2 5.8 7.2 0.1 2.4 1 1 1 2 2 2 0 AAA domain TsaE PF02367.17 ABA77890.1 - 0.13 12.2 0.1 0.36 10.8 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 ABA77890.1 - 0.14 12.4 0.0 0.35 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 ABA77890.1 - 0.18 11.7 0.0 0.56 10.1 0.0 1.8 1 1 1 2 2 2 0 NTPase AAA_2 PF07724.14 ABA77890.1 - 0.21 11.7 0.0 0.47 10.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_25 PF13481.6 ABA77890.1 - 0.23 11.0 2.0 0.63 9.6 0.2 2.6 3 0 0 3 3 3 0 AAA domain CRCB PF02537.15 ABA77891.1 - 5.7e-23 81.1 11.5 6.9e-23 80.8 11.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) PseudoU_synth_2 PF00849.22 ABA77892.1 - 5e-32 111.2 0.0 8.2e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 ABA77892.1 - 5e-07 29.3 0.1 8.5e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 S4 domain ATP12 PF07542.11 ABA77893.1 - 4.9e-37 126.9 0.0 6.7e-37 126.4 0.0 1.2 1 0 0 1 1 1 1 ATP12 chaperone protein TMEM100 PF16311.5 ABA77893.1 - 0.024 14.2 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 100 SBP_bac_3 PF00497.20 ABA77894.1 - 3e-31 108.6 0.0 4.1e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 ABA77894.1 - 8.7e-05 22.6 0.1 0.00057 19.9 0.1 2.0 1 1 1 2 2 2 2 NMT1/THI5 like OpuAC PF04069.12 ABA77894.1 - 0.025 14.2 0.3 0.041 13.5 0.3 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system VitK2_biosynth PF02621.14 ABA77894.1 - 0.039 13.5 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 Menaquinone biosynthesis BPD_transp_1 PF00528.22 ABA77895.1 - 2e-16 60.3 17.7 1.1e-14 54.6 15.2 2.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SecE PF00584.20 ABA77895.1 - 0.024 14.5 6.7 0.066 13.1 0.1 3.4 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex CLLAC PF15675.5 ABA77895.1 - 0.11 12.0 4.2 0.35 10.5 4.2 1.9 1 0 0 1 1 1 0 CLLAC-motif containing domain BPD_transp_1 PF00528.22 ABA77896.1 - 4.4e-23 82.0 12.6 4.4e-23 82.0 12.6 2.9 3 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF4731 PF15875.5 ABA77896.1 - 0.029 14.6 3.7 0.25 11.6 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4731) CytB6-F_Fe-S PF08802.10 ABA77896.1 - 7.4 6.7 9.8 0.6 10.2 0.5 3.5 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit ABC_tran PF00005.27 ABA77897.1 - 3.3e-39 134.5 0.0 4.6e-39 134.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA77897.1 - 1.6e-11 44.6 0.0 1.5e-05 25.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA77897.1 - 2.4e-07 30.4 0.1 8.2e-06 25.4 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA77897.1 - 3.9e-05 23.3 0.0 7.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 ABA77897.1 - 0.00017 21.9 0.0 0.00029 21.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 ABA77897.1 - 0.00017 20.5 0.1 0.21 10.3 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 ABA77897.1 - 0.00028 20.8 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 ABA77897.1 - 0.00028 21.4 0.0 0.0006 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA77897.1 - 0.00033 21.1 0.0 0.0004 20.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 ABA77897.1 - 0.0011 18.8 0.0 0.25 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 ABA77897.1 - 0.0013 19.2 0.0 0.0032 18.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 ABA77897.1 - 0.0022 17.9 1.4 0.012 15.6 0.1 2.6 2 1 1 3 3 3 1 Rad17 P-loop domain T2SSE PF00437.20 ABA77897.1 - 0.0042 16.2 0.0 0.0075 15.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 ABA77897.1 - 0.0045 16.9 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 ABA77897.1 - 0.0051 17.2 0.0 0.22 11.9 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 ABA77897.1 - 0.0057 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 ABA77897.1 - 0.0061 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 ABA77897.1 - 0.0061 15.3 0.0 1.3 7.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 ABA77897.1 - 0.008 16.4 0.0 0.015 15.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 ABA77897.1 - 0.0086 16.3 0.4 0.13 12.5 0.4 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 ABA77897.1 - 0.01 16.1 0.1 0.043 14.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 ABA77897.1 - 0.013 15.1 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 ABA77897.1 - 0.015 15.0 0.0 0.063 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA77897.1 - 0.018 14.5 0.0 0.081 12.3 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 ABA77897.1 - 0.018 15.4 0.0 0.16 12.4 0.0 2.2 2 0 0 2 2 2 0 RNA helicase G-alpha PF00503.20 ABA77897.1 - 0.023 13.9 0.0 0.059 12.5 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit Sigma54_activat PF00158.26 ABA77897.1 - 0.03 14.0 0.0 0.07 12.8 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.18 ABA77897.1 - 0.034 13.5 0.1 0.077 12.3 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family NTPase_1 PF03266.15 ABA77897.1 - 0.044 13.7 0.0 0.099 12.6 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_7 PF12775.7 ABA77897.1 - 0.045 13.3 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 ABA77897.1 - 0.046 13.1 0.1 3.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 ABA77897.1 - 0.057 13.1 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA12 PF10443.9 ABA77897.1 - 0.059 12.1 0.0 0.089 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein DUF815 PF05673.13 ABA77897.1 - 0.066 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TK PF00265.18 ABA77897.1 - 0.094 12.6 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 Thymidine kinase Viral_helicase1 PF01443.18 ABA77897.1 - 0.095 12.4 0.0 0.2 11.4 0.0 1.7 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase DAP3 PF10236.9 ABA77897.1 - 0.1 11.7 0.1 0.93 8.6 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.23 ABA77897.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Roc PF08477.13 ABA77897.1 - 0.11 12.7 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PriA_CRR PF18319.1 ABA77897.1 - 0.12 12.4 0.0 0.47 10.5 0.0 2.0 3 0 0 3 3 1 0 PriA DNA helicase Cys-rich region (CRR) domain Mistic PF11458.8 ABA77897.1 - 0.13 12.2 0.1 3 7.9 0.0 2.3 2 0 0 2 2 2 0 Membrane-integrating protein Mistic AAA_19 PF13245.6 ABA77897.1 - 0.14 12.4 0.1 0.19 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 ABA77897.1 - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase PRK PF00485.18 ABA77897.1 - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Fer2 PF00111.27 ABA77898.1 - 3.3e-14 52.6 0.1 4.3e-14 52.2 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_M24 PF00557.24 ABA77899.1 - 4e-28 98.5 0.0 5.6e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 ABA77899.1 - 1.9e-10 41.5 0.0 3.1e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain 2C_adapt PF08793.10 ABA77899.1 - 0.18 12.0 0.1 0.5 10.6 0.1 1.7 1 0 0 1 1 1 0 2-cysteine adaptor domain Phytase-like PF13449.6 ABA77900.1 - 4.2e-51 174.6 0.0 3.1e-48 165.2 0.0 2.9 3 1 0 3 3 3 2 Esterase-like activity of phytase Beta_propel PF09826.9 ABA77900.1 - 0.072 11.9 0.0 0.39 9.5 0.0 1.9 2 0 0 2 2 2 0 Beta propeller domain DUF4859 PF16151.5 ABA77900.1 - 0.13 12.2 0.5 5.5 6.9 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4859) YkuD PF03734.14 ABA77901.2 - 4.3e-14 53.2 0.0 5.9e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain Cupin_3 PF05899.12 ABA77902.1 - 1.9e-24 85.1 0.4 2.4e-24 84.8 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_2 PF07883.11 ABA77902.1 - 5.7e-05 22.8 0.0 9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Pantoate_transf PF02548.15 ABA77903.1 - 9.4e-109 362.8 2.1 1.1e-108 362.5 2.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase TPR_10 PF13374.6 ABA77903.1 - 0.17 11.8 0.9 0.26 11.2 0.1 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Pantoate_ligase PF02569.15 ABA77904.1 - 6.4e-97 323.9 0.0 7.2e-97 323.8 0.0 1.0 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase CTP_transf_like PF01467.26 ABA77904.1 - 0.057 13.6 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase-like Peptidase_M20 PF01546.28 ABA77905.1 - 1.4e-34 119.6 0.2 1.7e-34 119.3 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA77905.1 - 3.4e-22 78.4 0.0 7.4e-22 77.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 ABA77905.1 - 0.042 13.5 0.1 0.07 12.8 0.1 1.3 1 0 0 1 1 1 0 Peptidase family M28 Glyco_trans_4_4 PF13579.6 ABA77905.1 - 0.1 13.1 0.1 0.1 13.1 0.1 3.3 2 1 1 3 3 3 0 Glycosyl transferase 4-like domain RseC_MucC PF04246.12 ABA77906.1 - 0.2 11.6 1.9 9.7 6.2 0.2 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF1523 PF07509.11 ABA77907.1 - 1.8e-72 242.4 1.0 2.1e-72 242.2 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1523) TMEM101 PF15111.6 ABA77907.1 - 0.023 14.3 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 TMEM101 protein family DUF3088 PF11287.8 ABA77907.1 - 0.14 11.9 0.0 0.24 11.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3088) B3_4 PF03483.17 ABA77908.1 - 4.3e-62 208.9 0.0 6.5e-62 208.3 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA_synthFbeta PF17759.1 ABA77908.1 - 7.3e-46 156.3 0.0 1.1e-45 155.7 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain FDX-ACB PF03147.14 ABA77908.1 - 1.7e-23 82.8 0.5 2.8e-23 82.1 0.5 1.4 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain tRNA_bind PF01588.20 ABA77908.1 - 3e-16 59.3 0.0 6e-16 58.3 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain B5 PF03484.15 ABA77908.1 - 6.5e-14 52.0 0.0 2.3e-11 43.8 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetase B5 domain AraC_binding PF02311.19 ABA77908.1 - 0.058 13.3 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 AraC-like ligand binding domain tRNA-synt_2d PF01409.20 ABA77910.1 - 5.7e-101 337.1 0.0 6.9e-101 336.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 ABA77910.1 - 8.4e-20 70.5 4.0 1.7e-19 69.5 4.0 1.5 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain DctP PF03480.13 ABA77910.1 - 0.053 12.9 0.5 0.23 10.7 0.1 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 Ribosomal_L20 PF00453.18 ABA77911.1 - 9.5e-45 151.1 6.3 1.1e-44 150.9 6.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 Sterile PF03015.19 ABA77911.1 - 0.089 13.0 0.1 0.12 12.6 0.1 1.2 1 0 0 1 1 1 0 Male sterility protein ANTAR PF03861.14 ABA77911.1 - 0.11 12.3 1.8 1.1 9.2 0.1 2.5 2 1 0 2 2 2 0 ANTAR domain Ribosomal_L35p PF01632.19 ABA77912.1 - 3.5e-21 75.5 4.4 3.8e-21 75.4 4.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 PK PF00224.21 ABA77913.1 - 3.2e-107 358.4 0.0 4.3e-107 358.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 ABA77913.1 - 6.6e-28 97.3 0.8 2.3e-27 95.6 0.8 2.0 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain DUF4253 PF14062.6 ABA77913.1 - 0.0017 18.5 0.1 2.7 8.2 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4253) IMPDH PF00478.25 ABA77913.1 - 0.027 13.5 0.4 0.27 10.2 0.0 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FGase PF05013.12 ABA77914.1 - 1.3e-40 139.9 0.6 1.5e-40 139.7 0.6 1.0 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase Aminotran_4 PF01063.19 ABA77915.1 - 3.7e-41 141.4 0.0 4.2e-41 141.2 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV MR_MLE_C PF13378.6 ABA77916.1 - 2.8e-26 92.4 0.8 4.8e-26 91.7 0.8 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 ABA77916.1 - 8.8e-15 54.9 0.0 2e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF1611 PF07755.11 ABA77917.1 - 1.4e-75 253.0 0.0 2.1e-75 252.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 ABA77917.1 - 2e-26 92.1 0.1 4.6e-26 90.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain HpcH_HpaI PF03328.14 ABA77918.1 - 7.3e-44 149.5 0.1 1.8e-43 148.2 0.0 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 ABA77918.1 - 5.2e-10 39.0 0.0 6.5e-05 22.2 0.1 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold GyrI-like PF06445.15 ABA77919.1 - 1e-34 120.1 0.0 1.1e-34 119.9 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 ABA77919.1 - 6.8e-10 39.3 0.0 2.5e-09 37.5 0.0 1.7 1 1 0 1 1 1 1 Integron-associated effector binding protein DUF2428 PF10350.9 ABA77919.1 - 0.0017 17.7 0.1 0.0023 17.2 0.1 1.1 1 0 0 1 1 1 1 Putative death-receptor fusion protein (DUF2428) ACCA PF03255.14 ABA77920.1 - 1.7e-59 199.8 0.0 2.6e-59 199.2 0.0 1.3 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 ABA77920.1 - 4.6e-18 65.1 0.2 5.7e-18 64.8 0.2 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 ABA77920.1 - 8.6e-07 28.7 0.1 1.2e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) YjeF_N PF03853.15 ABA77920.1 - 0.015 15.2 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus Multi_Drug_Res PF00893.19 ABA77921.1 - 2.6e-29 101.7 3.4 3.2e-29 101.5 3.4 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 ABA77921.1 - 0.00094 19.4 13.1 0.003 17.7 13.4 1.7 1 1 0 1 1 1 1 EamA-like transporter family GSDH PF07995.11 ABA77922.1 - 1.3e-118 396.1 0.1 1.5e-118 395.9 0.1 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase GreA_GreB_N PF03449.15 ABA77924.2 - 6.4e-31 106.3 1.2 6.4e-31 106.3 1.2 2.0 2 0 0 2 2 2 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 ABA77924.2 - 4e-27 93.9 0.1 5.8e-27 93.4 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term Myosin_N PF02736.19 ABA77924.2 - 0.0077 16.0 1.2 2.7 7.9 0.1 2.6 2 0 0 2 2 2 2 Myosin N-terminal SH3-like domain ETF_QO PF05187.13 ABA77925.1 - 1.6e-47 159.9 0.1 3.3e-47 158.9 0.1 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S FAD_binding_2 PF00890.24 ABA77925.1 - 2.4e-10 40.1 0.1 9.6e-06 24.9 0.3 2.3 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 ABA77925.1 - 1.1e-09 38.4 0.3 2e-05 24.4 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 ABA77925.1 - 2.5e-09 36.7 0.0 6.6e-08 32.1 0.0 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 ABA77925.1 - 1e-08 35.3 0.0 1.1e-07 32.0 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 ABA77925.1 - 7.1e-06 25.0 0.1 1.1e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 ABA77925.1 - 5.1e-05 22.6 0.0 8.1e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 ABA77925.1 - 9.2e-05 21.7 0.6 0.00014 21.1 0.6 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 ABA77925.1 - 0.00017 20.9 0.1 0.00025 20.4 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA77925.1 - 0.00027 20.4 1.7 0.00082 18.8 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 ABA77925.1 - 0.0013 19.3 0.0 0.46 11.1 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 ABA77925.1 - 0.0015 17.7 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 ABA77925.1 - 0.0018 18.3 0.1 0.0044 17.0 0.1 1.7 1 0 0 1 1 1 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 ABA77925.1 - 0.002 17.5 0.2 0.0043 16.3 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain Mqo PF06039.15 ABA77925.1 - 0.03 12.9 0.0 0.043 12.4 0.0 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Trp_halogenase PF04820.14 ABA77925.1 - 0.053 12.4 0.0 0.38 9.6 0.0 1.9 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 ABA77925.1 - 0.12 11.5 0.1 0.18 10.9 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A GHMP_kinases_C PF08544.13 ABA77927.1 - 1.7e-09 37.9 0.6 4.2e-09 36.7 0.6 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 ABA77927.1 - 5.5e-08 32.9 0.3 5.5e-08 32.9 0.3 2.2 2 1 0 2 2 2 1 GHMP kinases N terminal domain GSDH PF07995.11 ABA77929.1 - 5.3e-17 62.1 0.1 2e-15 56.9 0.1 2.7 2 1 0 2 2 2 1 Glucose / Sorbosone dehydrogenase SGL PF08450.12 ABA77929.1 - 3.4e-05 23.5 0.5 0.0035 17.0 0.0 2.1 2 0 0 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region He_PIG PF05345.12 ABA77929.1 - 0.81 9.9 3.3 3.7 7.8 0.1 3.3 3 0 0 3 3 3 0 Putative Ig domain NHL PF01436.21 ABA77929.1 - 0.89 9.7 4.3 5.1 7.3 0.2 3.5 4 0 0 4 4 4 0 NHL repeat DUF2231 PF09990.9 ABA77930.1 - 7e-20 71.4 12.4 7e-20 71.4 12.4 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2231) SecE PF00584.20 ABA77930.1 - 0.66 9.9 4.2 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex FUSC_2 PF13515.6 ABA77931.1 - 2.1e-07 31.1 17.5 1.9e-05 24.8 13.0 2.7 1 1 2 3 3 3 2 Fusaric acid resistance protein-like ArAE_1 PF06081.11 ABA77931.1 - 1.4e-05 25.3 6.0 0.00023 21.3 2.5 2.1 1 1 1 2 2 2 2 Aromatic acid exporter family member 1 FUSC PF04632.12 ABA77931.1 - 3.2e-05 22.7 28.3 0.00028 19.6 28.3 2.1 1 1 0 1 1 1 1 Fusaric acid resistance protein family ALMT PF11744.8 ABA77931.1 - 0.0036 16.2 3.4 0.012 14.5 3.6 1.7 3 0 0 3 3 3 1 Aluminium activated malate transporter Response_reg PF00072.24 ABA77932.1 - 1.6e-07 31.5 0.0 2.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Peripla_BP_3 PF13377.6 ABA77933.1 - 1.4e-31 110.0 1.1 2.6e-31 109.2 0.5 1.7 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 ABA77933.1 - 6e-20 71.8 0.0 7.5e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 ABA77933.1 - 2.1e-13 49.8 0.5 4.3e-13 48.8 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 ABA77933.1 - 1.6e-08 34.4 0.0 2.6e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain MerR PF00376.23 ABA77933.1 - 0.0045 16.7 0.0 0.72 9.7 0.1 2.8 2 0 0 2 2 2 1 MerR family regulatory protein HTH_38 PF13936.6 ABA77933.1 - 0.011 15.5 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Peripla_BP_6 PF13458.6 ABA77933.1 - 0.031 13.9 0.6 0.048 13.3 0.1 1.5 2 0 0 2 2 2 0 Periplasmic binding protein HTH_Tnp_ISL3 PF13542.6 ABA77933.1 - 0.041 13.3 1.5 0.046 13.1 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 YdaS_antitoxin PF15943.5 ABA77933.1 - 0.048 13.5 0.2 0.14 12.0 0.1 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT AbiEi_4 PF13338.6 ABA77933.1 - 0.05 13.8 0.2 0.71 10.1 0.0 2.7 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_IclR PF09339.10 ABA77933.1 - 0.059 13.2 4.6 0.12 12.2 0.0 3.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain PEP-utilizers_C PF02896.18 ABA77934.1 - 1.5e-105 352.5 0.0 2.3e-105 351.9 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PTS_EIIA_2 PF00359.22 ABA77934.1 - 3.4e-31 108.1 0.0 6.5e-31 107.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PEP-utilizers PF00391.23 ABA77934.1 - 5.6e-24 83.7 1.6 1.6e-23 82.2 1.6 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 ABA77934.1 - 9e-21 73.9 0.0 3.6e-20 72.0 0.0 2.1 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PEP-utilisers_N PF05524.13 ABA77934.1 - 2.7e-18 66.2 0.2 2.7e-18 66.2 0.2 3.2 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PfkB PF00294.24 ABA77935.1 - 3.7e-51 174.2 3.2 4.6e-51 173.9 3.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 ABA77935.1 - 2.3e-06 27.2 0.0 4.3e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PTS_IIB PF02302.17 ABA77936.1 - 4.5e-20 72.1 0.5 2.9e-14 53.5 0.1 2.6 3 0 0 3 3 3 2 PTS system, Lactose/Cellobiose specific IIB subunit PTS_EIIC PF02378.18 ABA77936.1 - 5.2e-12 45.4 28.3 5.2e-12 45.4 28.3 2.6 2 1 0 2 2 2 1 Phosphotransferase system, EIIC Aconitase PF00330.20 ABA77936.1 - 0.031 13.3 0.1 0.046 12.7 0.1 1.2 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) UPF0060 PF02694.15 ABA77937.1 - 2.9e-29 101.5 12.3 3.4e-29 101.2 12.3 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family EamA PF00892.20 ABA77937.1 - 0.021 15.0 7.4 0.025 14.7 7.4 1.2 1 0 0 1 1 1 0 EamA-like transporter family MerR_1 PF13411.6 ABA77938.1 - 1.7e-19 69.6 0.0 2.8e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR-DNA-bind PF09278.11 ABA77938.1 - 3.5e-19 69.1 6.1 5.7e-19 68.4 6.1 1.4 1 0 0 1 1 1 1 MerR, DNA binding MerR PF00376.23 ABA77938.1 - 2.7e-17 62.2 0.2 5.6e-17 61.2 0.2 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_17 PF12728.7 ABA77938.1 - 0.055 13.7 0.2 4.9 7.4 0.0 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain E1-E2_ATPase PF00122.20 ABA77939.1 - 2.8e-50 170.4 1.3 4.2e-50 169.8 0.0 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 ABA77939.1 - 2e-38 132.8 5.9 4.6e-38 131.6 5.9 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 ABA77939.1 - 1.5e-09 38.2 0.0 4.1e-09 36.7 0.0 1.9 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 ABA77939.1 - 9.9e-06 25.5 0.8 2e-05 24.5 0.8 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA77939.1 - 0.014 15.8 2.4 0.015 15.7 0.4 2.3 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase SSB PF00436.25 ABA77940.1 - 3.2e-38 129.9 0.4 3.9e-38 129.7 0.4 1.1 1 0 0 1 1 1 1 Single-strand binding protein family DUF3016 PF11454.8 ABA77940.1 - 0.046 13.5 0.0 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3016) SLT PF01464.20 ABA77941.1 - 3.7e-25 87.8 0.1 5.3e-25 87.4 0.1 1.2 1 0 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 ABA77941.1 - 0.0038 17.7 0.0 0.0068 16.9 0.0 1.4 1 0 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Phage_lysozyme2 PF18013.1 ABA77941.1 - 0.084 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Phage tail lysozyme tRNA-synt_2b PF00587.25 ABA77942.1 - 2.7e-30 105.6 0.0 4.9e-30 104.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 ABA77942.1 - 1.4e-20 73.5 1.6 2e-20 73.0 1.6 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DREPP PF05558.12 ABA77942.1 - 0.015 15.2 0.9 0.024 14.5 0.9 1.2 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide Sod_Cu PF00080.20 ABA77943.1 - 2.7e-35 121.6 0.0 3.3e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) PepSY_2 PF13670.6 ABA77943.1 - 1.1 9.3 3.0 1.7 8.7 3.0 1.3 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain YajC PF02699.15 ABA77944.1 - 1.5e-29 101.6 3.0 1.8e-29 101.4 3.0 1.1 1 0 0 1 1 1 1 Preprotein translocase subunit Orf78 PF06024.12 ABA77944.1 - 0.0038 17.5 0.0 0.0055 17.0 0.0 1.2 1 0 0 1 1 1 1 Orf78 (ac78) DUF5436 PF17504.2 ABA77944.1 - 0.055 13.8 0.5 0.099 13.0 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5436) SH3_15 PF18346.1 ABA77944.1 - 0.066 13.6 2.8 0.12 12.7 2.7 1.5 1 1 0 1 1 1 0 Mind bomb SH3 repeat domain FCD PF07729.12 ABA77944.1 - 0.091 13.2 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 FCD domain SecD_SecF PF02355.16 ABA77945.1 - 7.1e-21 74.4 9.6 1.1e-20 73.9 9.6 1.2 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 ABA77945.1 - 4.9e-08 32.3 19.7 1.6e-07 30.6 19.0 1.9 2 0 0 2 2 2 1 MMPL family ACR_tran PF00873.19 ABA77945.1 - 2.6e-05 22.1 11.3 2.6e-05 22.1 11.3 1.9 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family SecD-TM1 PF13721.6 ABA77945.1 - 0.00037 20.9 2.1 0.00083 19.8 0.0 2.6 3 0 0 3 3 3 1 SecD export protein N-terminal TM region Sec_GG PF07549.14 ABA77945.1 - 0.002 17.6 0.0 0.006 16.0 0.0 1.9 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.18 ABA77945.1 - 0.38 8.8 10.3 0.51 8.3 10.3 1.1 1 0 0 1 1 1 0 Patched family Phage_holin_3_6 PF07332.11 ABA77945.1 - 1.1 9.4 17.0 0.029 14.4 3.9 2.6 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III SecD_SecF PF02355.16 ABA77946.1 - 6.6e-75 250.7 11.8 9.8e-75 250.1 11.8 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 ABA77946.1 - 6.3e-09 35.0 0.2 1.9e-08 33.5 0.2 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF3995 PF13160.6 ABA77946.1 - 1.1 9.7 12.2 0.053 13.9 3.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3995) DUF1576 PF07613.11 ABA77946.1 - 1.6 8.2 9.8 24 4.4 9.8 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1576) DUF498 PF04430.14 ABA77947.1 - 4.2e-28 97.6 0.0 5e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) ABC_tran PF00005.27 ABA77948.1 - 2.5e-23 83.1 0.0 3.6e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA77948.1 - 1.4e-07 31.6 0.0 0.0026 17.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA77948.1 - 7e-05 23.3 0.2 8.8e-05 22.9 0.2 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA77948.1 - 0.00078 19.7 0.0 0.0012 19.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 ABA77948.1 - 0.001 18.6 0.0 0.087 12.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 ABA77948.1 - 0.0057 16.4 0.5 0.0088 15.8 0.5 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 ABA77948.1 - 0.0085 16.0 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 NACHT domain RsgA_GTPase PF03193.16 ABA77948.1 - 0.025 14.5 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 ABA77948.1 - 0.039 13.7 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 ABA77948.1 - 0.056 13.9 0.1 0.08 13.4 0.1 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 ABA77948.1 - 0.058 13.5 0.1 0.11 12.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA77948.1 - 0.076 13.0 0.0 0.092 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA77948.1 - 0.09 13.3 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 ABA77948.1 - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 ABA77948.1 - 0.15 11.3 0.0 1.2 8.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.21 ABA77948.1 - 0.16 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 ABA77948.1 - 0.22 11.2 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain CcmB PF03379.13 ABA77949.1 - 6e-91 303.7 25.2 6.7e-91 303.6 25.2 1.0 1 0 0 1 1 1 1 CcmB protein Shal-type PF11601.8 ABA77949.1 - 7.6 6.2 9.6 0.61 9.7 4.5 1.9 2 0 0 2 2 2 0 Shal-type voltage-gated potassium channels, N-terminal Cytochrom_C_asm PF01578.20 ABA77950.2 - 8.2e-28 97.6 18.3 8.2e-28 97.6 18.3 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein UPF0139 PF03669.13 ABA77950.2 - 0.11 12.3 0.1 0.35 10.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0139) UPF0154 PF03672.13 ABA77950.2 - 0.83 9.7 0.1 0.83 9.7 0.1 2.1 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) PIRT PF15099.6 ABA77950.2 - 3.7 7.1 9.2 2.3 7.8 1.6 3.2 2 1 1 3 3 3 0 Phosphoinositide-interacting protein family CcmD PF04995.14 ABA77951.1 - 1.8e-12 47.1 5.3 2e-12 47.0 5.3 1.0 1 0 0 1 1 1 1 Heme exporter protein D (CcmD) Redoxin PF08534.10 ABA77952.1 - 3.3e-12 46.3 0.0 4.3e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 ABA77952.1 - 1.4e-10 41.1 0.0 1.7e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 ABA77952.1 - 2.1e-08 34.1 0.0 8.6e-07 28.9 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 ABA77952.1 - 1.2e-05 25.6 0.0 2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 ABA77952.1 - 0.00096 19.6 0.0 0.0016 18.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Cu_amine_oxid PF01179.20 ABA77952.1 - 0.036 13.0 0.0 0.047 12.6 0.0 1.1 1 0 0 1 1 1 0 Copper amine oxidase, enzyme domain Aconitase PF00330.20 ABA77953.2 - 2.5e-181 603.7 0.0 3.3e-181 603.3 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 ABA77953.2 - 8.3e-41 139.4 0.0 1.6e-40 138.5 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF1223 PF06764.11 ABA77954.1 - 4.2e-64 216.3 0.0 4.8e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1223) Glutaredoxin PF00462.24 ABA77954.1 - 0.046 13.9 0.0 0.091 13.0 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_4 PF13462.6 ABA77954.1 - 0.18 12.0 0.1 0.83 9.8 0.0 1.9 2 0 0 2 2 2 0 Thioredoxin Vitellogenin_N PF01347.22 ABA77955.1 - 0.33 9.3 0.3 0.47 8.8 0.3 1.1 1 0 0 1 1 1 0 Lipoprotein amino terminal region tRNA-synt_1b PF00579.25 ABA77956.2 - 4.3e-77 259.3 0.0 5.7e-77 258.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) SCAB_CC PF16712.5 ABA77956.2 - 0.14 11.9 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Coiled-coil regions of plant-specific actin-binding protein MurJ PF03023.14 ABA77957.1 - 2.8e-108 362.4 22.8 2.8e-108 362.4 22.8 1.3 2 0 0 2 2 2 1 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 ABA77957.1 - 1.1e-12 48.2 6.2 1.1e-12 48.2 6.2 4.3 3 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 ABA77957.1 - 2.3e-05 23.8 0.1 2.3e-05 23.8 0.1 3.1 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein MatE PF01554.18 ABA77957.1 - 0.0011 18.7 17.2 0.0035 17.0 0.9 3.2 2 1 0 2 2 2 2 MatE GlnD_UR_UTase PF08335.11 ABA77958.1 - 5.8e-38 130.3 0.1 1.6e-37 128.9 0.1 1.8 1 0 0 1 1 1 1 GlnD PII-uridylyltransferase HD PF01966.22 ABA77958.1 - 2.3e-13 50.4 0.2 2.1e-12 47.4 0.2 2.6 2 0 0 2 2 2 1 HD domain ACT PF01842.25 ABA77958.1 - 2.4e-13 49.6 0.0 2.3e-05 24.1 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 ABA77958.1 - 1.8e-06 27.8 0.0 0.024 14.6 0.0 2.7 2 0 0 2 2 2 2 ACT domain GlnE PF03710.15 ABA77958.1 - 0.00024 20.6 0.1 0.00062 19.2 0.0 1.7 2 0 0 2 2 2 1 Glutamate-ammonia ligase adenylyltransferase ACT_4 PF13291.6 ABA77958.1 - 0.00057 20.4 0.0 0.095 13.3 0.0 2.5 2 0 0 2 2 2 1 ACT domain PolyA_pol_RNAbd PF12627.7 ABA77958.1 - 0.003 17.3 0.4 0.013 15.3 0.1 2.4 2 0 0 2 2 2 1 Probable RNA and SrmB- binding site of polymerase A DUF294 PF03445.13 ABA77958.1 - 0.008 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 NTP_transf_2 PF01909.23 ABA77958.1 - 0.016 15.5 0.0 0.041 14.2 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain Peripla_BP_6 PF13458.6 ABA77959.1 - 1.2e-39 137.0 14.1 1.5e-39 136.7 14.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 ABA77959.1 - 9.3e-06 24.7 2.9 1.2e-05 24.3 2.9 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_4 PF13407.6 ABA77959.1 - 0.0013 18.4 2.8 0.002 17.8 2.8 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 ABA77959.1 - 0.0061 15.7 0.2 0.015 14.4 0.1 1.6 2 0 0 2 2 2 1 Receptor family ligand binding region TP_methylase PF00590.20 ABA77960.1 - 2.5e-24 86.4 2.6 2.5e-24 86.4 2.6 1.6 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UPF0102 PF02021.17 ABA77961.1 - 9.6e-16 57.8 0.1 1.2e-15 57.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Hjc PF01870.18 ABA77961.1 - 0.0021 18.0 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Mrr_cat PF04471.12 ABA77961.1 - 0.0046 17.0 0.0 0.0055 16.7 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease AHJR-like PF18743.1 ABA77961.1 - 0.0093 15.5 0.1 0.013 15.0 0.1 1.2 1 0 0 1 1 1 1 REase_AHJR-like Cas_Cas4 PF01930.17 ABA77961.1 - 0.013 15.6 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF83 DUF4143 PF13635.6 ABA77961.1 - 0.032 14.4 0.0 0.047 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DUF234 PF03008.14 ABA77961.1 - 0.083 13.4 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function GSH-S_ATP PF02955.16 ABA77962.1 - 2.1e-72 242.2 0.0 2.6e-72 241.9 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_N PF02951.14 ABA77962.1 - 1.2e-38 131.8 0.0 1.9e-38 131.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain RimK PF08443.11 ABA77962.1 - 6.6e-17 61.7 0.0 8.7e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 ABA77962.1 - 4.8e-07 29.3 0.0 3e-06 26.7 0.0 2.0 2 0 0 2 2 2 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 ABA77962.1 - 0.15 11.3 0.0 0.43 9.8 0.0 1.7 1 1 1 2 2 2 0 Sugar-transfer associated ATP-grasp Mg_chelatase PF01078.21 ABA77963.1 - 1.9e-87 292.0 0.0 2.9e-87 291.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ChlI PF13541.6 ABA77963.1 - 1.7e-39 134.4 0.1 2.6e-39 133.8 0.1 1.3 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Mg_chelatase_C PF13335.6 ABA77963.1 - 7e-31 106.7 2.7 1.7e-30 105.5 2.7 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal AAA_5 PF07728.14 ABA77963.1 - 1e-07 32.0 0.0 8.6e-07 29.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 ABA77963.1 - 5.5e-07 29.4 0.0 0.0042 16.8 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.23 ABA77963.1 - 1.8e-05 24.0 0.0 0.025 13.7 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain Lon_C PF05362.13 ABA77963.1 - 0.0054 16.3 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_16 PF13191.6 ABA77963.1 - 0.0069 16.8 0.7 0.026 14.9 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activ_2 PF14532.6 ABA77963.1 - 0.03 14.4 0.0 0.56 10.3 0.0 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_32 PF13654.6 ABA77963.1 - 0.05 12.4 0.0 0.64 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 ABA77963.1 - 0.059 13.8 0.0 0.28 11.6 0.0 2.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 ABA77963.1 - 0.078 12.3 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family RuvB_N PF05496.12 ABA77963.1 - 0.089 12.5 0.0 2.2 8.0 0.0 2.7 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 ABA77963.1 - 0.17 12.2 0.0 0.8 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain FeoC PF09012.10 ABA77964.1 - 5.5e-24 84.0 0.1 6.2e-24 83.9 0.1 1.0 1 0 0 1 1 1 1 FeoC like transcriptional regulator FeoB_N PF02421.18 ABA77965.1 - 3.7e-66 221.5 0.1 7.4e-66 220.5 0.0 1.5 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.14 ABA77965.1 - 5.8e-47 158.6 11.2 1.7e-32 112.0 0.2 3.5 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 ABA77965.1 - 3.2e-22 78.0 1.8 3.2e-22 78.0 1.8 2.7 3 0 0 3 3 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 ABA77965.1 - 6.8e-19 68.0 0.0 1.2e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 ABA77965.1 - 2e-13 50.7 0.0 3.6e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 FeoB cytosolic helical domain RsgA_GTPase PF03193.16 ABA77965.1 - 0.00017 21.6 0.2 0.2 11.6 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 ABA77965.1 - 0.0014 18.1 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 ABA77965.1 - 0.0019 17.8 0.5 0.24 10.9 0.1 3.0 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 ABA77965.1 - 0.0082 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 ABA77965.1 - 0.021 15.3 0.1 0.036 14.6 0.1 1.4 1 0 0 1 1 1 0 ABC transporter Mid2 PF04478.12 ABA77965.1 - 0.038 13.8 0.0 0.095 12.5 0.0 1.6 1 0 0 1 1 1 0 Mid2 like cell wall stress sensor Dynamin_N PF00350.23 ABA77965.1 - 0.061 13.4 0.0 3.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Dynamin family ATP_bind_1 PF03029.17 ABA77965.1 - 0.14 11.9 0.0 0.61 9.8 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AIG1 PF04548.16 ABA77965.1 - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 AIG1 family FeoA PF04023.14 ABA77966.1 - 3.3e-17 62.5 0.0 3.7e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 ABA77967.1 - 3.7e-17 62.4 0.1 4.1e-17 62.2 0.1 1.0 1 0 0 1 1 1 1 FeoA domain DUF892 PF05974.12 ABA77968.1 - 3e-62 209.3 7.3 3.4e-62 209.1 7.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Molybdopterin PF00384.22 ABA77969.1 - 2.6e-21 76.1 0.0 3.6e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 ABA77969.1 - 1.8e-08 34.3 0.0 4.5e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HTH_38 PF13936.6 ABA77969.1 - 0.19 11.6 0.0 0.57 10.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain CinA PF02464.17 ABA77970.1 - 7.3e-38 129.6 0.1 1.4e-37 128.6 0.1 1.4 1 0 0 1 1 1 1 Competence-damaged protein NAD_synthase PF02540.17 ABA77970.1 - 8.1e-34 116.8 0.0 1.5e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 ABA77970.1 - 9.8e-06 24.6 0.0 1.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 ABA77970.1 - 0.028 14.1 0.1 0.052 13.2 0.1 1.5 1 0 0 1 1 1 0 Asparagine synthase MoCF_biosynth PF00994.24 ABA77971.1 - 3.8e-30 104.4 0.0 4.6e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_N PF08240.12 ABA77972.1 - 2.1e-26 91.9 1.6 4e-26 91.0 1.6 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA77972.1 - 1.6e-23 83.1 0.2 3.6e-23 82.0 0.2 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA77972.1 - 7.8e-05 23.7 0.1 0.00019 22.5 0.1 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 ABA77972.1 - 0.019 14.3 3.4 0.029 13.7 3.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 ABA77972.1 - 0.038 13.3 0.1 0.071 12.5 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NADH_4Fe-4S PF10589.9 ABA77972.1 - 0.071 13.2 2.2 0.17 12.0 2.2 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ThiF PF00899.21 ABA77972.1 - 0.15 11.4 1.3 0.29 10.4 1.3 1.4 1 0 0 1 1 1 0 ThiF family PmbA_TldD PF01523.16 ABA77973.1 - 1.6e-64 218.5 0.0 2e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase COX2 PF00116.20 ABA77974.1 - 5.1e-46 155.5 1.7 1.2e-44 151.0 1.7 2.3 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 ABA77974.1 - 2e-24 85.5 0.5 3.6e-24 84.7 0.5 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF2165 PF09933.9 ABA77974.1 - 0.044 13.8 0.3 0.044 13.8 0.3 1.7 2 0 0 2 2 2 0 Predicted small integral membrane protein (DUF2165) DHHC PF01529.20 ABA77974.1 - 0.15 12.2 0.2 0.24 11.5 0.2 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase Gemini_mov PF01708.16 ABA77974.1 - 0.34 10.7 3.8 0.2 11.4 0.3 2.1 1 1 1 2 2 2 0 Geminivirus putative movement protein UbiA PF01040.18 ABA77975.1 - 9.7e-59 198.7 24.5 1.3e-58 198.3 24.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3040 PF11239.8 ABA77975.1 - 0.04 14.2 0.5 0.04 14.2 0.5 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3040) FixQ PF05545.11 ABA77975.1 - 0.081 12.9 0.4 0.081 12.9 0.4 2.5 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ Coiled-coil_56 PF09813.9 ABA77976.1 - 0.074 13.1 0.1 0.082 13.0 0.1 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 CtaG_Cox11 PF04442.14 ABA77977.1 - 7.4e-56 188.4 0.0 8.9e-56 188.1 0.0 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase assembly protein CtaG/Cox11 COX3 PF00510.18 ABA77978.1 - 5.4e-89 298.4 25.1 6.1e-89 298.3 25.1 1.0 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III SURF1 PF02104.15 ABA77979.1 - 1.7e-35 122.8 0.0 2e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 SURF1 family Thr_synth_N PF14821.6 ABA77980.1 - 6.7e-27 93.5 0.0 2.1e-26 91.9 0.0 1.9 2 0 0 2 2 2 1 Threonine synthase N terminus PALP PF00291.25 ABA77980.1 - 1.1e-19 71.0 2.4 1.5e-17 64.0 2.4 2.2 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_M16 PF00675.20 ABA77981.1 - 6.7e-43 146.2 0.0 1.4e-42 145.2 0.0 1.5 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 ABA77981.1 - 4.2e-37 127.9 0.0 1.1e-36 126.5 0.0 1.7 2 0 0 2 2 2 1 Peptidase M16 inactive domain DUF1192 PF06698.11 ABA77981.1 - 0.04 14.0 0.1 0.11 12.6 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) RPAP1_N PF08621.10 ABA77981.1 - 0.17 11.6 1.0 1.3 8.9 0.1 2.4 2 0 0 2 2 2 0 RPAP1-like, N-terminal Acetyltransf_3 PF13302.7 ABA77982.1 - 9.4e-25 87.9 0.1 1.1e-24 87.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 ABA77982.1 - 8.5e-09 35.7 0.0 9.9e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA77982.1 - 2e-08 34.5 0.0 2.6e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 ABA77982.1 - 0.00019 21.1 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Lactamase_B_3 PF13483.6 ABA77983.1 - 1.8e-42 145.0 0.1 2.1e-42 144.8 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Peptidase_S78 PF04586.17 ABA77983.1 - 0.031 14.4 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 Caudovirus prohead serine protease FAD-oxidase_C PF02913.19 ABA77984.2 - 3.1e-48 164.6 0.1 5.5e-48 163.8 0.1 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 ABA77984.2 - 5.7e-32 110.4 1.2 1e-31 109.6 1.2 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_5 PF00941.21 ABA77984.2 - 0.14 11.9 0.2 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 FAD binding domain in molybdopterin dehydrogenase Pribosyltran PF00156.27 ABA77985.1 - 2.6e-17 62.8 0.0 3.2e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 ABA77985.1 - 0.0036 16.8 0.0 0.0051 16.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 ABA77985.1 - 0.06 12.8 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase PNP_UDP_1 PF01048.20 ABA77986.1 - 2.6e-45 154.5 0.4 2.6e-45 154.5 0.4 1.4 2 0 0 2 2 2 1 Phosphorylase superfamily Flavin_Reduct PF01613.18 ABA77987.1 - 9.7e-22 77.7 0.0 1.3e-21 77.3 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Acetyltransf_1 PF00583.25 ABA77988.1 - 2.8e-11 43.7 0.0 3.5e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 ABA77988.1 - 2.4e-08 34.1 0.0 3.1e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA77988.1 - 3.9e-06 27.2 0.0 5.3e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA77988.1 - 0.0087 16.0 0.0 0.014 15.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA77988.1 - 0.018 15.1 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase FR47 PF08445.10 ABA77988.1 - 0.043 13.8 0.1 0.18 11.8 0.2 2.0 2 1 0 2 2 2 0 FR47-like protein EcsC PF12787.7 ABA77989.1 - 1.6e-23 83.6 2.0 5.4e-23 81.9 2.0 1.8 1 1 0 1 1 1 1 EcsC protein family IspA PF04279.15 ABA77990.1 - 4.4e-50 170.3 12.5 5.1e-50 170.1 12.5 1.0 1 0 0 1 1 1 1 Intracellular septation protein A DUF4407 PF14362.6 ABA77990.1 - 0.24 10.7 5.0 0.47 9.8 5.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) MerC PF03203.14 ABA77990.1 - 3.5 8.1 9.5 3.1 8.3 7.1 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein PrgI PF12666.7 ABA77990.1 - 8.6 7.1 15.3 3.6 8.3 0.9 2.8 1 1 2 3 3 3 0 PrgI family protein DUF2207 PF09972.9 ABA77990.1 - 8.9 4.9 10.8 3.6e+02 -0.4 10.8 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) EamA PF00892.20 ABA77991.1 - 3e-14 53.4 31.5 2.7e-11 43.8 13.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family Multi_Drug_Res PF00893.19 ABA77991.1 - 1.4e-05 25.6 6.7 0.0007 20.2 4.2 2.8 2 0 0 2 2 2 2 Small Multidrug Resistance protein UAA PF08449.11 ABA77991.1 - 0.074 12.2 3.0 0.22 10.7 0.8 2.2 2 0 0 2 2 2 0 UAA transporter family SRP54 PF00448.22 ABA77992.2 - 1.1e-73 247.0 0.2 1.4e-73 246.7 0.2 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 ABA77992.2 - 1.1e-07 31.8 0.3 2e-07 30.9 0.3 1.4 1 0 0 1 1 1 1 AAA domain SRP54_N PF02881.19 ABA77992.2 - 1.8e-07 31.3 0.0 4.5e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_16 PF13191.6 ABA77992.2 - 3e-06 27.7 0.1 6.4e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 ABA77992.2 - 1.9e-05 24.0 1.0 2.1e-05 23.9 0.1 1.6 2 1 0 2 2 1 1 Zeta toxin MeaB PF03308.16 ABA77992.2 - 4.3e-05 22.6 0.0 0.001 18.1 0.1 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 ABA77992.2 - 8.2e-05 22.9 0.1 0.0003 21.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 ABA77992.2 - 0.00025 21.5 0.0 0.00065 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 ABA77992.2 - 0.0019 17.8 0.1 0.0031 17.1 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PIF1 PF05970.14 ABA77992.2 - 0.0032 16.7 0.0 0.0047 16.1 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase AAA_33 PF13671.6 ABA77992.2 - 0.0036 17.5 0.4 0.0092 16.1 0.4 1.7 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 ABA77992.2 - 0.0063 16.4 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.6 ABA77992.2 - 0.0091 16.3 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 ABA77992.2 - 0.0092 14.9 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.27 ABA77992.2 - 0.018 15.6 0.0 0.028 14.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 ABA77992.2 - 0.02 15.3 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 ABA77992.2 - 0.025 14.7 0.5 0.2 11.7 0.7 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 ABA77992.2 - 0.028 14.1 0.1 0.065 12.9 0.1 1.6 1 0 0 1 1 1 0 Thymidylate kinase KTI12 PF08433.10 ABA77992.2 - 0.039 13.4 0.1 0.12 11.8 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MobB PF03205.14 ABA77992.2 - 0.042 13.7 0.3 0.12 12.3 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 ABA77992.2 - 0.057 13.2 0.9 0.17 11.6 0.6 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 ABA77992.2 - 0.067 13.3 0.6 0.24 11.5 0.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 ABA77992.2 - 0.088 12.7 0.5 0.19 11.6 0.3 1.6 2 0 0 2 2 1 0 NACHT domain Viral_helicase1 PF01443.18 ABA77992.2 - 0.1 12.3 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF853 PF05872.12 ABA77992.2 - 0.14 10.7 2.1 0.12 10.9 0.4 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) SRPRB PF09439.10 ABA77992.2 - 0.15 11.5 0.3 1.8 7.9 0.0 2.5 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit GGDEF_2 PF17853.1 ABA77992.2 - 0.15 12.3 1.0 0.34 11.2 0.2 2.1 2 1 0 2 2 2 0 GGDEF-like domain DUF2075 PF09848.9 ABA77992.2 - 0.16 11.2 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Herpes_ori_bp PF02399.15 ABA77992.2 - 0.17 9.9 0.0 0.23 9.5 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein AAA_28 PF13521.6 ABA77992.2 - 0.17 12.1 0.1 0.33 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 ABA77992.2 - 0.19 11.6 1.8 2.7 7.9 0.5 2.2 1 1 1 2 2 2 0 NTPase AAA_29 PF13555.6 ABA77992.2 - 0.19 11.5 0.1 0.57 10.0 0.0 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 ABA77992.2 - 0.21 11.3 0.1 0.38 10.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 ABA77992.2 - 0.29 10.4 1.2 1.4 8.2 1.2 1.9 1 1 0 1 1 1 0 KaiC FAM75 PF14650.6 ABA77992.2 - 0.82 9.2 4.4 1.1 8.7 4.4 1.1 1 0 0 1 1 1 0 FAM75 family Exonuc_VII_L PF02601.15 ABA77994.1 - 1.4e-89 300.7 0.0 7.1e-88 295.1 0.0 2.0 1 1 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 ABA77994.1 - 5.3e-26 90.6 0.0 9.4e-26 89.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 ABA77994.1 - 3.3e-08 33.4 0.0 7.2e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain UPF0126 PF03458.13 ABA77994.1 - 0.0092 15.8 0.0 0.028 14.3 0.0 1.9 2 0 0 2 2 2 1 UPF0126 domain Apolipoprotein PF01442.18 ABA77994.1 - 0.014 15.2 11.2 0.04 13.8 11.2 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain RecJ_OB PF17768.1 ABA77994.1 - 0.016 15.4 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 RecJ OB domain SPOR PF05036.13 ABA77995.1 - 0.13 12.6 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Sporulation related domain GARS_A PF01071.19 ABA77996.1 - 4.5e-74 248.4 0.1 6.4e-74 247.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 ABA77996.1 - 2.9e-33 114.5 0.2 8.2e-33 113.1 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 ABA77996.1 - 7.4e-28 96.7 0.3 7.4e-28 96.7 0.3 2.9 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, C domain CPSase_L_D2 PF02786.17 ABA77996.1 - 0.00034 20.2 0.1 0.00059 19.4 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 ABA77996.1 - 0.00078 19.1 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 ABA77996.1 - 0.0068 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 ABA77996.1 - 0.04 13.4 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus PK PF00224.21 ABA77997.1 - 4.4e-47 160.6 0.0 5.5e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain AA_kinase PF00696.28 ABA77998.1 - 1.6e-42 145.8 0.3 3.2e-42 144.8 0.1 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 ABA77998.1 - 2.3e-20 72.1 4.1 2.9e-15 55.8 1.1 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 ABA77998.1 - 4.8e-19 67.8 0.3 1.3e-13 50.4 0.0 2.9 2 0 0 2 2 2 2 ACT domain UDPG_MGDP_dh_N PF03721.14 ABA77998.1 - 0.063 12.8 0.9 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACT_6 PF13740.6 ABA77998.1 - 0.074 13.1 0.0 0.49 10.4 0.0 2.5 2 1 0 2 2 2 0 ACT domain NAD_binding_7 PF13241.6 ABA77998.1 - 0.42 11.1 4.3 20 5.7 0.4 3.3 3 1 0 3 3 3 0 Putative NAD(P)-binding PEP-utilizers_C PF02896.18 ABA77999.1 - 1.5e-76 257.3 0.0 2.4e-76 256.7 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 ABA77999.1 - 2.3e-18 65.6 0.5 6.2e-18 64.3 0.1 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 ABA77999.1 - 1.6e-17 63.7 1.7 3.5e-17 62.7 1.7 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, N-terminal GAF_2 PF13185.6 ABA77999.1 - 2.6e-12 47.2 1.0 9.4e-12 45.4 0.1 2.4 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 ABA77999.1 - 6.4e-08 33.3 0.0 5.9e-07 30.2 0.0 2.5 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 ABA77999.1 - 8.1e-08 32.7 0.0 2.3e-07 31.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain GET2 PF08690.10 ABA77999.1 - 0.035 13.8 0.1 0.053 13.2 0.1 1.2 1 0 0 1 1 1 0 GET complex subunit GET2 Cys_Met_Meta_PP PF01053.20 ABA78000.2 - 2.1e-128 428.1 0.0 2.4e-128 427.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 ABA78000.2 - 1.6e-09 37.5 0.0 2e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 ABA78000.2 - 1.8e-09 37.0 0.8 2.8e-09 36.4 0.6 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 ABA78000.2 - 5.4e-06 26.0 2.5 5.4e-06 26.0 2.5 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 ABA78000.2 - 0.0046 16.3 0.9 0.041 13.2 0.9 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase HWE_HK PF07536.14 ABA78000.2 - 0.054 14.2 0.1 25 5.7 0.0 2.7 2 0 0 2 2 2 0 HWE histidine kinase GCHY-1 PF02649.14 ABA78001.1 - 7e-71 238.8 0.0 8.2e-71 238.5 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 TrkH PF02386.16 ABA78002.1 - 3.6e-39 134.6 10.5 6.8e-38 130.4 10.5 2.0 1 1 0 1 1 1 1 Cation transport protein Form-deh_trans PF09163.11 ABA78002.1 - 1.9 8.3 7.3 0.38 10.5 1.1 3.3 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane TrkH PF02386.16 ABA78003.1 - 5.8e-43 147.1 14.3 2.3e-23 82.5 0.9 2.0 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.11 ABA78003.1 - 2 8.2 7.2 0.22 11.3 1.4 2.5 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Trypsin_2 PF13365.6 ABA78004.1 - 6.2e-13 49.9 2.5 9e-13 49.4 0.5 2.3 3 0 0 3 3 3 1 Trypsin-like peptidase domain PG_binding_1 PF01471.18 ABA78004.1 - 1.5e-09 37.9 0.4 5.2e-09 36.2 0.2 2.0 2 0 0 2 2 2 1 Putative peptidoglycan binding domain SPOR PF05036.13 ABA78004.1 - 0.00013 22.3 0.0 0.00033 21.0 0.0 1.7 1 0 0 1 1 1 1 Sporulation related domain PG_binding_2 PF08823.11 ABA78004.1 - 0.003 17.8 0.2 0.0072 16.6 0.2 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain tRNA-synt_2e PF02091.15 ABA78005.1 - 6.7e-142 471.7 0.0 7.5e-142 471.5 0.0 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit N-glycanase_C PF09113.10 ABA78005.1 - 0.002 17.9 0.1 0.004 16.9 0.1 1.5 1 0 0 1 1 1 1 Peptide-N-glycosidase F, C terminal tRNA_synt_2f PF02092.17 ABA78007.1 - 4.6e-194 646.3 0.0 6.1e-194 645.9 0.0 1.1 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.15 ABA78007.1 - 2.1e-07 31.1 0.3 5.7e-07 29.7 0.3 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain PEP-utilizers_C PF02896.18 ABA78008.1 - 5e-82 275.3 0.0 7.3e-82 274.8 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 ABA78008.1 - 7.7e-27 92.8 0.3 2e-26 91.5 0.3 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RHH_1 PF01402.21 ABA78008.1 - 4.4 7.4 5.7 4.3 7.4 0.0 3.7 5 0 0 5 5 5 0 Ribbon-helix-helix protein, copG family Hydrolase_2 PF07486.12 ABA78009.1 - 7.4e-26 91.0 0.0 1.4e-25 90.1 0.0 1.5 1 0 0 1 1 1 1 Cell Wall Hydrolase FolB PF02152.18 ABA78010.1 - 2e-20 73.4 0.1 2.9e-20 72.9 0.1 1.2 1 0 0 1 1 1 1 Dihydroneopterin aldolase Pterin_bind PF00809.22 ABA78011.1 - 9.8e-86 287.4 0.0 1.2e-85 287.1 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme PGM_PMM_I PF02878.16 ABA78012.1 - 7.2e-46 155.3 0.0 1.6e-45 154.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 ABA78012.1 - 1.5e-34 118.6 0.0 2.7e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 ABA78012.1 - 5.5e-19 68.7 0.0 1.2e-18 67.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 ABA78012.1 - 1e-14 54.4 1.6 3.4e-14 52.8 0.5 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain IlvN PF07991.12 ABA78014.1 - 1.9e-70 235.7 0.3 2.6e-70 235.3 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 ABA78014.1 - 3.8e-64 215.3 0.1 5.2e-64 214.9 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 ABA78014.1 - 2.9e-06 26.8 0.0 5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 ABA78014.1 - 4.1e-06 27.3 0.0 6.9e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 ABA78014.1 - 0.0012 19.0 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 ABA78014.1 - 0.0057 16.8 0.1 0.017 15.3 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Oxidored_nitro PF00148.19 ABA78014.1 - 0.012 14.4 0.0 0.02 13.7 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_7 PF13241.6 ABA78014.1 - 0.013 15.9 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 ABA78014.1 - 0.074 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Mur_ligase PF01225.25 ABA78014.1 - 0.074 13.4 0.2 0.16 12.3 0.2 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain HTH_24 PF13412.6 ABA78015.1 - 2.8e-13 49.2 0.1 5e-13 48.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 ABA78015.1 - 9.5e-13 47.9 0.1 1.4e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 ABA78015.1 - 4.8e-12 45.5 3.5 8.1e-12 44.8 2.6 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA78015.1 - 4.2e-05 23.3 1.8 0.0001 22.1 1.8 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 ABA78015.1 - 0.0016 18.4 0.3 0.0039 17.1 0.3 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 ABA78015.1 - 0.0016 18.5 2.1 0.0036 17.3 2.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 ABA78015.1 - 0.0047 16.7 2.0 0.0095 15.7 2.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 ABA78015.1 - 0.012 15.5 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 ABA78015.1 - 0.013 15.4 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 ABA78015.1 - 0.031 14.2 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AsnC_trans_reg PF01037.21 ABA78016.1 - 2.9e-17 62.4 0.2 5.2e-17 61.6 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 ABA78016.1 - 6.3e-14 51.5 2.6 1.3e-13 50.6 2.6 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 ABA78016.1 - 8.1e-12 44.5 0.0 1.3e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 ABA78016.1 - 1.2e-06 28.4 0.4 2.9e-06 27.2 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA78016.1 - 2.7e-05 24.0 1.1 4.8e-05 23.2 1.1 1.5 1 0 0 1 1 1 1 MarR family HTH_1 PF00126.27 ABA78016.1 - 8.5e-05 22.4 0.4 0.00022 21.1 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.22 ABA78016.1 - 0.0005 19.9 0.0 0.00094 19.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 ABA78016.1 - 0.0013 18.6 0.1 0.02 14.9 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 ABA78016.1 - 0.0067 16.2 0.2 0.013 15.3 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA78016.1 - 0.007 16.3 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 ABA78016.1 - 0.05 13.4 0.0 5 7.0 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Tnp_4 PF13613.6 ABA78016.1 - 0.053 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_5 PF01022.20 ABA78016.1 - 0.085 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Aminotran_5 PF00266.19 ABA78017.1 - 5.8e-18 65.0 0.0 7.3e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 ABA78017.1 - 0.015 14.6 0.5 0.037 13.3 0.5 1.7 1 1 0 1 1 1 0 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 ABA78017.1 - 0.14 10.7 0.1 0.28 9.7 0.1 1.5 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme FAD_binding_3 PF01494.19 ABA78018.1 - 3.4e-35 121.9 0.0 4.2e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 ABA78018.1 - 1.6e-05 24.2 1.6 2.8e-05 23.4 1.6 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 ABA78018.1 - 0.00011 21.6 0.1 0.16 11.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 ABA78018.1 - 0.00016 20.9 1.2 0.11 11.5 0.4 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 ABA78018.1 - 0.0019 17.7 0.7 0.0026 17.2 0.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 ABA78018.1 - 0.0052 16.4 0.9 0.013 15.2 0.6 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 ABA78018.1 - 0.011 14.6 1.0 5.6 5.7 0.9 2.8 2 1 0 2 2 2 0 Tryptophan halogenase MerR-DNA-bind PF09278.11 ABA78018.1 - 0.015 15.9 0.8 0.035 14.7 0.8 1.6 1 0 0 1 1 1 0 MerR, DNA binding AlaDh_PNT_C PF01262.21 ABA78018.1 - 0.018 14.3 0.3 0.032 13.5 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 ABA78018.1 - 0.026 13.6 0.2 0.05 12.7 0.2 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 ABA78018.1 - 0.047 13.9 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 ABA78018.1 - 0.073 13.6 0.1 0.2 12.2 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA78018.1 - 0.075 11.7 0.3 0.25 10.0 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 ABA78018.1 - 0.12 11.9 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 ABA78018.1 - 0.23 10.6 0.2 0.46 9.7 0.2 1.5 1 0 0 1 1 1 0 Thi4 family FA_desaturase PF00487.24 ABA78019.1 - 0.046 13.5 0.9 0.047 13.5 0.9 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF5345 PF17280.2 ABA78019.1 - 0.18 11.8 4.3 1.4 9.0 4.3 2.0 1 1 0 1 1 1 0 Family of unknown function (DUF5345) HAD_2 PF13419.6 ABA78020.1 - 1.4e-07 31.8 0.0 2.8e-06 27.5 0.0 2.0 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase FCD PF07729.12 ABA78021.1 - 3.5e-26 92.1 14.2 3.5e-26 92.1 14.2 1.6 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 ABA78021.1 - 2.4e-18 65.6 0.9 2.1e-17 62.5 0.4 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 ABA78021.1 - 8.1e-05 22.1 0.1 0.00019 20.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 ABA78021.1 - 0.00016 21.6 0.9 0.00056 19.8 0.2 2.2 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 ABA78021.1 - 0.00037 20.3 2.2 0.00059 19.6 0.9 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 ABA78021.1 - 0.0013 18.5 0.1 0.0035 17.1 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 ABA78021.1 - 0.0014 18.5 0.1 0.0038 17.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 ABA78021.1 - 0.008 16.0 0.1 0.022 14.6 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 ABA78021.1 - 0.009 15.9 0.9 0.073 13.0 0.1 2.7 3 0 0 3 3 3 1 MarR family HTH_8 PF02954.19 ABA78021.1 - 0.011 15.5 2.6 0.56 10.0 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_DeoR PF08220.12 ABA78021.1 - 0.012 15.3 0.7 0.027 14.2 0.1 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain FadR_C PF07840.12 ABA78021.1 - 0.019 14.9 0.1 0.053 13.4 0.0 1.6 1 1 1 2 2 2 0 FadR C-terminal domain HTH_CodY PF08222.11 ABA78021.1 - 0.021 14.3 0.1 0.045 13.3 0.1 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_28 PF13518.6 ABA78021.1 - 0.024 14.7 0.4 0.074 13.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_rep_O PF04492.13 ABA78021.1 - 0.027 15.1 0.0 0.058 14.0 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage replication protein O Fe_dep_repress PF01325.19 ABA78021.1 - 0.027 14.6 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 ABA78021.1 - 0.034 14.0 0.1 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.22 ABA78021.1 - 0.052 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.6 ABA78021.1 - 0.063 13.0 0.3 0.29 10.8 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4423) UBA_2 PF08587.11 ABA78021.1 - 0.25 11.5 0.7 11 6.2 0.0 3.0 3 0 0 3 3 3 0 Ubiquitin associated domain (UBA) Glyco_tranf_2_3 PF13641.6 ABA78022.1 - 3.6e-35 121.9 0.1 2.1e-34 119.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 ABA78022.1 - 6e-28 98.1 7.7 9.4e-28 97.5 3.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase family group 2 T2SSE_N PF05157.15 ABA78022.1 - 2.4e-15 56.7 1.1 6.3e-15 55.4 0.5 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein E, N-terminal domain Glycos_transf_2 PF00535.26 ABA78022.1 - 7.5e-12 45.4 0.0 1.1e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 ABA78022.1 - 6.1e-11 42.1 0.0 1.3e-10 41.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Phage_holin_3_5 PF16085.5 ABA78022.1 - 2.6 8.2 6.2 1.8 8.7 3.5 2.1 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III YkuD PF03734.14 ABA78023.2 - 1.9e-14 54.3 0.0 2.6e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain K-cyclin_vir_C PF09080.10 ABA78023.2 - 0.07 13.6 1.1 0.14 12.6 1.1 1.4 1 0 0 1 1 1 0 K cyclin, C terminal CPSase_sm_chain PF00988.22 ABA78024.2 - 1.1e-47 161.1 0.0 1.6e-47 160.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 ABA78024.2 - 2.9e-46 157.6 0.0 4.1e-46 157.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 ABA78024.2 - 1.2e-08 34.9 0.7 8e-07 29.0 0.6 2.5 1 1 0 1 1 1 1 Peptidase C26 YqeY PF09424.10 ABA78025.1 - 2.4e-48 163.9 4.5 2.7e-48 163.7 4.5 1.0 1 0 0 1 1 1 1 Yqey-like protein OAD_gamma PF04277.13 ABA78025.1 - 0.22 12.1 0.1 0.22 12.1 0.1 1.8 2 1 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF2244 PF10003.9 ABA78026.1 - 7.1e-42 142.4 0.0 8.2e-42 142.2 0.0 1.0 1 0 0 1 1 1 1 Integral membrane protein (DUF2244) MARVEL PF01284.23 ABA78026.1 - 0.16 12.0 3.0 0.22 11.5 3.0 1.1 1 0 0 1 1 1 0 Membrane-associating domain COX1 PF00115.20 ABA78027.1 - 5.4e-147 490.1 65.4 7.6e-147 489.6 65.4 1.2 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I FixQ PF05545.11 ABA78027.1 - 8.5 6.4 20.7 0.13 12.3 1.6 4.1 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ BPL_LplA_LipB PF03099.19 ABA78028.1 - 6.7e-07 29.3 0.0 9.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family PG_binding_1 PF01471.18 ABA78029.1 - 2.9e-08 33.8 0.4 6e-08 32.8 0.4 1.5 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Rick_17kDa_Anti PF05433.15 ABA78029.1 - 0.0031 17.3 2.1 0.0031 17.3 2.1 2.7 2 0 0 2 2 2 1 Glycine zipper 2TM domain ABC_tran PF00005.27 ABA78030.1 - 4.1e-34 118.0 0.0 6.9e-34 117.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA78030.1 - 9.1e-15 54.6 0.1 3.5e-13 49.5 0.0 2.8 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 ABA78030.1 - 0.0018 18.1 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA78030.1 - 0.011 15.2 0.0 0.3 10.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF1513 PF07433.11 ABA78030.1 - 0.02 14.0 0.1 0.042 12.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1513) PhoH PF02562.16 ABA78030.1 - 0.026 14.0 0.2 4 6.8 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.29 ABA78030.1 - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase RsgA_GTPase PF03193.16 ABA78030.1 - 0.14 12.1 0.1 0.33 10.9 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 ABA78030.1 - 0.14 12.4 0.3 0.28 11.5 0.3 1.7 1 1 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.6 ABA78031.2 - 5.5e-38 131.4 4.2 7.1e-38 131.0 4.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA78031.2 - 7.7e-17 62.2 9.6 1.2e-16 61.5 6.7 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA78032.1 - 3.5e-14 53.0 20.9 3.5e-14 53.0 20.9 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA78033.1 - 1.7e-17 63.8 18.1 1.7e-17 63.8 18.1 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component Ribosomal_L33 PF00471.20 ABA78034.1 - 5e-13 49.3 0.3 5.7e-13 49.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L33 Acetyltransf_10 PF13673.7 ABA78035.1 - 8.4e-13 48.4 0.0 1.1e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA78035.1 - 3.6e-10 40.1 0.0 4.7e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA78035.1 - 1.5e-09 38.1 0.0 1.9e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 ABA78035.1 - 0.00018 21.6 0.0 0.00057 20.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA78035.1 - 0.0015 18.5 0.1 0.0024 17.8 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 ABA78035.1 - 0.049 13.8 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Bax1-I PF01027.20 ABA78036.1 - 1.5e-60 204.6 33.7 1.7e-60 204.4 33.7 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 BaxI_1 PF12811.7 ABA78036.1 - 0.0024 17.5 24.1 0.0032 17.1 24.1 1.1 1 0 0 1 1 1 1 Bax inhibitor 1 like Bacteriocin_IId PF09221.10 ABA78036.1 - 0.32 11.2 7.3 0.08 13.1 3.0 2.2 2 0 0 2 2 2 0 Bacteriocin class IId cyclical uberolysin-like DUF1127 PF06568.11 ABA78037.1 - 2.5e-09 36.7 2.1 5.1e-09 35.7 2.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1127) HTH_1 PF00126.27 ABA78038.2 - 3.4e-20 71.7 3.2 6.4e-20 70.9 3.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 ABA78038.2 - 1.7e-17 63.5 1.1 2.4e-17 63.0 0.2 1.7 2 1 0 2 2 2 1 LysR substrate binding domain ADH_zinc_N PF00107.26 ABA78039.1 - 9.6e-25 87.1 0.3 1.4e-24 86.5 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA78039.1 - 8.4e-20 72.2 0.0 1.3e-19 71.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA78039.1 - 2.8e-10 40.0 0.0 5.2e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 ABA78039.1 - 0.00025 20.5 1.4 0.00037 20.0 1.4 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 ABA78039.1 - 0.0027 17.6 3.9 0.0038 17.2 3.9 1.1 1 0 0 1 1 1 1 NAD(P)H-binding AlaDh_PNT_C PF01262.21 ABA78039.1 - 0.039 13.2 1.2 0.056 12.7 1.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain RmlD_sub_bind PF04321.17 ABA78039.1 - 0.1 11.7 0.2 0.13 11.3 0.2 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain HTH_3 PF01381.22 ABA78040.1 - 4.1e-12 46.0 0.0 8.8e-12 44.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 ABA78040.1 - 6.4e-09 35.7 0.0 9.4e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 ABA78040.1 - 2.8e-08 34.0 0.2 1.3e-07 31.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 ABA78040.1 - 3.6e-05 24.1 0.0 5.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 ABA78040.1 - 0.035 14.1 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 ABA78040.1 - 0.045 13.6 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 ABA78040.1 - 0.061 13.1 0.1 14 5.6 0.0 2.6 1 1 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 ABA78040.1 - 0.094 12.7 0.3 2 8.5 0.0 2.9 3 1 1 4 4 4 0 Crp-like helix-turn-helix domain Inositol_P PF00459.25 ABA78041.1 - 8.6e-43 146.8 0.0 1.1e-42 146.5 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Hydrolase_2 PF07486.12 ABA78042.2 - 2.3e-20 73.4 0.1 3.2e-20 72.9 0.1 1.2 1 0 0 1 1 1 1 Cell Wall Hydrolase MS_channel PF00924.18 ABA78043.1 - 1.9e-34 119.0 0.3 1.9e-34 119.0 0.3 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel Amidohydro_1 PF01979.20 ABA78044.2 - 8e-56 189.8 0.0 1e-55 189.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 ABA78044.2 - 1e-12 48.3 4.7 5.2e-11 42.7 0.4 3.1 2 1 0 3 3 3 2 Amidohydrolase family MgtE_N PF03448.17 ABA78045.2 - 4.9e-26 91.3 3.0 4.9e-26 91.3 3.0 3.3 4 0 0 4 4 4 1 MgtE intracellular N domain MgtE PF01769.16 ABA78045.2 - 4e-23 82.1 7.8 4e-23 82.1 7.8 1.7 2 0 0 2 2 2 1 Divalent cation transporter CBS PF00571.28 ABA78045.2 - 4.9e-13 49.3 1.7 3.2e-05 24.3 0.1 3.2 3 0 0 3 3 3 2 CBS domain Utp12 PF04003.12 ABA78045.2 - 0.031 14.6 0.1 0.19 12.1 0.0 2.1 2 0 0 2 2 2 0 Dip2/Utp12 Family FliG_C PF01706.16 ABA78045.2 - 0.04 14.1 0.5 0.23 11.7 0.1 2.2 2 0 0 2 2 2 0 FliG C-terminal domain 5-FTHF_cyc-lig PF01812.20 ABA78046.1 - 3.3e-23 82.5 0.0 4.2e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family AAA_16 PF13191.6 ABA78047.1 - 0.0025 18.2 0.0 0.0049 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 ABA78047.1 - 0.0071 16.7 0.0 0.075 13.4 0.0 2.6 3 1 0 3 3 3 1 RNA helicase Mg_chelatase PF01078.21 ABA78047.1 - 0.025 14.0 0.0 0.18 11.2 0.0 2.2 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 ABA78047.1 - 0.025 14.3 0.0 2.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain TIP49 PF06068.13 ABA78047.1 - 0.047 12.9 0.0 0.083 12.1 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 ABA78047.1 - 0.077 12.5 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 ABA78047.1 - 0.089 12.5 0.0 0.65 9.7 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 ABA78047.1 - 0.13 12.7 0.0 0.32 11.4 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA78047.1 - 0.16 12.0 0.0 0.95 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 ABA78047.1 - 0.23 11.9 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Peptidase_A24 PF01478.18 ABA78048.1 - 2.3e-10 40.8 14.1 2.3e-10 40.8 14.1 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family DUF4051 PF13260.6 ABA78048.1 - 0.22 11.3 3.6 0.45 10.3 3.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) TPR_19 PF14559.6 ABA78049.1 - 9e-13 48.5 7.1 0.0015 19.0 0.1 4.7 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 ABA78049.1 - 4.3e-08 33.3 11.0 0.039 14.8 0.0 5.8 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_2 PF07719.17 ABA78049.1 - 2.4e-07 30.4 0.1 3.6 7.9 0.0 6.0 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.6 ABA78049.1 - 9.1e-07 29.4 9.7 3.4 8.4 0.0 5.3 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_6 PF13174.6 ABA78049.1 - 1.3e-05 25.6 0.4 24 5.9 0.0 5.7 5 1 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 ABA78049.1 - 0.0041 17.4 1.9 2.8 8.3 0.1 4.6 2 1 3 5 5 5 1 Tetratricopeptide repeat ANAPC3 PF12895.7 ABA78049.1 - 0.0052 17.0 0.0 1.8 8.9 0.0 2.8 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 ABA78049.1 - 0.02 14.7 0.2 2.4 8.1 0.0 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat BTAD PF03704.17 ABA78049.1 - 0.028 14.9 2.3 0.21 12.0 0.1 2.9 2 2 1 3 3 3 0 Bacterial transcriptional activator domain TPR_20 PF14561.6 ABA78049.1 - 0.094 13.1 0.4 0.76 10.2 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 ABA78049.1 - 0.12 12.3 2.3 8.6 6.4 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_4 PF07721.14 ABA78049.1 - 0.16 12.7 4.6 6.7 7.6 0.0 3.9 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_2 PF07719.17 ABA78050.1 - 6.9e-14 50.8 0.6 7.6e-06 25.7 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 ABA78050.1 - 6.3e-11 41.6 0.0 6.5e-06 25.7 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 ABA78050.1 - 3.2e-10 39.5 0.2 3.4e-05 23.4 0.0 3.6 2 1 2 4 4 4 3 TPR repeat TPR_16 PF13432.6 ABA78050.1 - 3.4e-09 37.2 12.1 2.5e-06 28.0 6.1 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 ABA78050.1 - 3.9e-09 36.7 4.6 0.00026 21.2 3.7 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 ABA78050.1 - 7.6e-08 32.0 0.0 0.00012 22.0 0.0 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 ABA78050.1 - 1.8e-07 31.0 0.0 3.3e-05 24.0 0.0 2.8 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 ABA78050.1 - 6.8e-07 29.6 11.4 5.9e-05 23.6 0.1 4.1 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 ABA78050.1 - 6.9e-07 29.7 7.9 0.00028 21.3 0.2 2.6 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 ABA78050.1 - 1.5e-06 27.9 10.9 0.0024 17.7 1.2 3.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 ABA78050.1 - 0.00017 21.4 0.7 0.19 11.9 0.0 3.0 3 1 0 3 3 3 2 Tetratricopeptide repeat Coatomer_E PF04733.14 ABA78050.1 - 0.037 13.4 0.0 0.045 13.2 0.0 1.1 1 0 0 1 1 1 0 Coatomer epsilon subunit TPR_15 PF13429.6 ABA78050.1 - 0.041 13.1 0.2 0.17 11.1 0.1 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 ABA78050.1 - 0.07 13.8 1.2 5.3 7.9 0.0 3.4 3 1 0 3 3 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 ABA78050.1 - 0.073 13.2 0.0 0.85 9.7 0.0 2.3 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.14 ABA78050.1 - 0.23 12.2 18.1 1.1 10.1 0.0 4.4 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_9 PF13371.6 ABA78050.1 - 0.47 10.6 8.2 6.2 7.0 5.2 2.9 1 1 2 3 3 3 0 Tetratricopeptide repeat T2SSF PF00482.23 ABA78051.1 - 8e-20 71.1 1.5 8e-20 71.1 1.5 2.2 3 1 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF3040 PF11239.8 ABA78051.1 - 9.2 6.6 7.4 1.5 9.1 0.6 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) T2SSF PF00482.23 ABA78052.1 - 2.9e-16 59.6 0.5 2.9e-16 59.6 0.5 3.5 4 1 0 4 4 4 1 Type II secretion system (T2SS), protein F Lentiviral_Tat PF02998.14 ABA78052.1 - 0.14 12.2 0.2 0.3 11.2 0.2 1.4 1 0 0 1 1 1 0 Lentiviral Tat protein T2SSE PF00437.20 ABA78053.1 - 1e-82 277.3 1.2 1.4e-82 276.8 1.2 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_28 PF13521.6 ABA78053.1 - 0.0011 19.2 0.0 0.0026 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 ABA78053.1 - 0.0013 18.2 0.4 0.0025 17.2 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_16 PF13191.6 ABA78053.1 - 0.0017 18.8 0.2 0.0056 17.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 ABA78053.1 - 0.0022 18.5 0.1 0.0048 17.4 0.1 1.6 1 0 0 1 1 1 1 ABC transporter Microtub_bd PF16796.5 ABA78053.1 - 0.0031 17.4 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Microtubule binding AAA_7 PF12775.7 ABA78053.1 - 0.0082 15.7 0.0 0.09 12.3 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 ABA78053.1 - 0.0096 15.7 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 ABA78053.1 - 0.01 16.2 0.8 0.029 14.7 0.8 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 ABA78053.1 - 0.021 14.1 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_27 PF13514.6 ABA78053.1 - 0.024 14.2 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 ABA78053.1 - 0.025 14.4 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase CbiA PF01656.23 ABA78053.1 - 0.03 14.4 0.0 0.058 13.4 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 ABA78053.1 - 0.033 14.5 0.1 0.14 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 ABA78053.1 - 0.048 13.4 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 ABA78053.1 - 0.071 12.8 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_2 PF07724.14 ABA78053.1 - 0.098 12.8 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) cobW PF02492.19 ABA78053.1 - 0.11 12.0 0.1 0.6 9.7 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 ABA78053.1 - 0.12 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 ABA78053.1 - 0.13 12.8 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.21 ABA78053.1 - 0.17 11.4 1.4 0.41 10.1 0.5 1.8 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Pox_A32 PF04665.12 ABA78053.1 - 0.17 11.3 0.2 0.79 9.1 0.0 1.9 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_31 PF13614.6 ABA78054.1 - 1.7e-09 37.9 0.0 4.1e-09 36.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 ABA78054.1 - 3.6e-06 26.6 0.0 0.00038 20.0 0.0 2.5 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 ABA78054.1 - 3.2e-05 24.0 0.0 0.00012 22.2 0.0 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 ABA78054.1 - 9.3e-05 22.0 0.7 0.14 11.6 0.1 2.4 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 ABA78054.1 - 0.0047 16.3 0.0 0.12 11.6 0.0 2.7 2 1 0 2 2 2 1 ATPase MipZ Response_reg PF00072.24 ABA78054.1 - 0.008 16.3 0.1 0.075 13.2 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain OmpA PF00691.20 ABA78055.1 - 6.1e-22 77.8 0.0 9.6e-22 77.2 0.0 1.3 1 0 0 1 1 1 1 OmpA family Secretin PF00263.21 ABA78056.1 - 7.9e-46 155.8 0.1 1.8e-45 154.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial type II and III secretion system protein T2SS-T3SS_pil_N PF13629.6 ABA78056.1 - 2.8e-18 65.4 0.2 1.2e-17 63.3 0.1 2.1 2 0 0 2 2 2 1 Pilus formation protein N terminal region BON PF04972.17 ABA78056.1 - 2e-06 28.0 0.0 6.2e-06 26.4 0.0 1.9 1 0 0 1 1 1 1 BON domain RcpC PF16976.5 ABA78057.1 - 2.1e-24 85.8 1.5 5.1e-24 84.6 1.6 1.5 2 0 0 2 2 2 1 Flp pilus assembly protein RcpC/CpaB SAF PF08666.12 ABA78057.1 - 0.002 18.7 0.0 0.0091 16.6 0.0 2.1 2 0 0 2 2 2 1 SAF domain DUF4244 PF14029.6 ABA78058.1 - 0.045 13.2 2.3 2.2 7.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) Flp1_like PF16982.5 ABA78058.1 - 0.046 13.1 0.2 0.084 12.3 0.2 1.4 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain LYRIC PF15686.5 ABA78058.1 - 0.35 10.4 0.7 0.37 10.3 0.7 1.1 1 0 0 1 1 1 0 Lysine-rich CEACAM1 co-isolated protein family Clostridium_P47 PF06597.11 ABA78059.2 - 0.0039 16.0 0.4 0.0042 15.9 0.4 1.0 1 0 0 1 1 1 1 Clostridium P-47 protein DUF4244 PF14029.6 ABA78059.2 - 0.0069 15.8 0.4 0.0094 15.4 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4244) Flp1_like PF16982.5 ABA78059.2 - 0.079 12.4 0.6 0.17 11.3 0.3 1.8 2 0 0 2 2 2 0 Putative Flagellin, Flp1-like, domain SLT PF01464.20 ABA78060.1 - 1e-24 86.4 0.0 1.6e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase SLT domain SLT_2 PF13406.6 ABA78060.1 - 0.036 13.3 0.2 0.62 9.2 0.0 2.2 2 0 0 2 2 2 0 Transglycosylase SLT domain Transglycosylas PF06737.14 ABA78060.1 - 0.079 13.6 0.0 0.23 12.1 0.0 1.8 2 0 0 2 2 2 0 Transglycosylase-like domain Acetyltransf_CG PF14542.6 ABA78061.2 - 1.1e-21 76.7 0.0 1.3e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 ABA78061.2 - 0.0023 18.2 0.0 0.0025 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.7 ABA78061.2 - 0.0071 16.5 0.0 0.0082 16.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Methyltrn_RNA_2 PF04013.12 ABA78061.2 - 0.15 11.7 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase CoA_trans PF01144.23 ABA78062.1 - 4e-39 134.3 1.3 4.8e-39 134.0 1.3 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hyd_C PF13336.6 ABA78062.1 - 4.7e-05 23.4 0.1 6.3e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain IF-2B PF01008.17 ABA78062.1 - 0.0087 15.3 0.1 0.054 12.7 0.0 1.9 2 0 0 2 2 2 1 Initiation factor 2 subunit family CoA_trans PF01144.23 ABA78063.1 - 6.1e-73 244.8 0.0 6.8e-73 244.6 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase LysR_substrate PF03466.20 ABA78064.1 - 1.2e-22 80.4 5.5 1.7e-22 79.9 5.5 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA78064.1 - 4.7e-18 64.9 2.9 1e-17 63.8 2.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 ABA78064.1 - 0.00072 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 ABA78064.1 - 0.0013 18.6 2.8 0.0033 17.3 0.5 2.5 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 ABA78064.1 - 0.008 16.2 0.7 0.008 16.2 0.7 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 ABA78064.1 - 0.01 15.9 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_30 PF13556.6 ABA78064.1 - 0.017 14.9 0.1 0.037 13.8 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 ABA78064.1 - 0.024 14.4 0.7 0.088 12.6 0.4 2.1 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 ABA78064.1 - 0.029 14.5 0.1 0.087 13.0 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 ABA78064.1 - 0.05 13.4 0.3 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.6 ABA78064.1 - 0.057 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 ABA78064.1 - 0.078 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Acetyltransf_1 PF00583.25 ABA78065.1 - 4.7e-12 46.2 0.0 5.8e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 ABA78065.1 - 1.3e-06 28.4 0.0 1.8e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA78065.1 - 7.4e-06 26.3 0.0 9.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA78065.1 - 7.8e-06 25.8 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 ABA78065.1 - 0.0062 17.2 0.0 0.012 16.3 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA78065.1 - 0.053 13.7 0.0 0.1 12.7 0.0 1.6 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 ABA78065.1 - 0.13 12.4 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DSBA PF01323.20 ABA78066.1 - 8.4e-31 107.3 0.0 9.2e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 ABA78066.1 - 0.24 11.5 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Cupin_2 PF07883.11 ABA78067.1 - 6.2e-15 54.7 0.0 9.3e-15 54.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 ABA78067.1 - 0.0051 16.5 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Hydrolase_4 PF12146.8 ABA78068.1 - 8.8e-12 44.8 0.2 1.5e-11 44.0 0.2 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 ABA78068.1 - 7.5e-08 33.2 17.1 1.1e-07 32.7 17.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA78068.1 - 3e-05 23.8 0.2 4.5e-05 23.2 0.2 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold AAA_28 PF13521.6 ABA78069.1 - 3.6e-40 137.9 0.0 4e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 ABA78069.1 - 0.00048 20.5 0.1 0.00075 19.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA78069.1 - 0.00069 19.4 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 ABA78069.1 - 0.00097 19.7 0.0 0.0014 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA78069.1 - 0.0015 19.1 0.0 0.002 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA78069.1 - 0.0021 18.2 0.1 0.013 15.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 ABA78069.1 - 0.0032 18.0 0.0 0.0038 17.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter cobW PF02492.19 ABA78069.1 - 0.0034 17.0 0.1 0.005 16.5 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 ABA78069.1 - 0.0044 17.5 0.1 0.0062 17.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 ABA78069.1 - 0.0052 15.6 0.2 0.0064 15.3 0.2 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class DUF2075 PF09848.9 ABA78069.1 - 0.0053 16.0 0.0 0.0068 15.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 ABA78069.1 - 0.0059 16.3 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Ploopntkinase3 PF18751.1 ABA78069.1 - 0.0064 16.4 0.0 0.014 15.3 0.0 1.6 1 1 0 1 1 1 1 P-loop Nucleotide Kinase3 T2SSE PF00437.20 ABA78069.1 - 0.0072 15.4 0.0 0.0093 15.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Viral_helicase1 PF01443.18 ABA78069.1 - 0.0077 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 ABA78069.1 - 0.008 16.1 0.1 0.013 15.5 0.1 1.3 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 ABA78069.1 - 0.013 15.1 0.3 0.034 13.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 ABA78069.1 - 0.013 15.9 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 ABA78069.1 - 0.021 15.1 0.1 0.03 14.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 ABA78069.1 - 0.024 14.5 0.1 0.036 14.0 0.1 1.2 1 0 0 1 1 1 0 NTPase TrwB_AAD_bind PF10412.9 ABA78069.1 - 0.041 12.8 0.1 0.053 12.4 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 ABA78069.1 - 0.054 12.8 0.1 0.098 11.9 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 ABA78069.1 - 0.066 13.6 0.0 0.073 13.5 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 ABA78069.1 - 0.091 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ATP_bind_1 PF03029.17 ABA78069.1 - 0.093 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 ABA78069.1 - 0.11 12.5 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase DAP3 PF10236.9 ABA78069.1 - 0.12 11.5 0.1 0.17 11.0 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATPase PF06745.13 ABA78069.1 - 0.13 11.5 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 KaiC AAA_24 PF13479.6 ABA78069.1 - 0.13 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA78069.1 - 0.16 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA78069.1 - 0.18 12.2 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.10 ABA78069.1 - 0.25 10.8 0.0 0.34 10.3 0.0 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Phos_pyr_kin PF08543.12 ABA78070.2 - 1.3e-22 80.4 0.0 1.5e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 ABA78070.2 - 6.3e-06 25.7 0.2 3.9e-05 23.1 0.3 1.9 1 1 0 1 1 1 1 pfkB family carbohydrate kinase MOSC PF03473.17 ABA78071.1 - 1.7e-28 99.2 0.0 2.6e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 MOSC domain 3-alpha PF03475.14 ABA78071.1 - 8.5e-13 47.9 4.7 8.5e-13 47.9 4.7 1.9 2 0 0 2 2 2 1 3-alpha domain Aminotran_1_2 PF00155.21 ABA78072.1 - 4.7e-30 105.0 0.0 6.1e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 ABA78072.1 - 2.8e-16 58.9 3.2 1.7e-15 56.4 0.2 3.1 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 ABA78072.1 - 0.00021 20.2 0.0 0.049 12.4 0.0 2.1 2 0 0 2 2 2 2 Alanine-glyoxylate amino-transferase HTH_30 PF13556.6 ABA78072.1 - 0.015 15.1 0.6 0.12 12.2 0.2 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_36 PF13730.6 ABA78072.1 - 0.018 15.0 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 ABA78072.1 - 0.18 12.0 0.0 0.39 11.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain BATS PF06968.13 ABA78073.1 - 5.6e-15 55.2 0.0 3.2e-14 52.8 0.0 2.2 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 ABA78073.1 - 5.9e-13 49.5 0.1 1.7e-12 48.1 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily BioY PF02632.14 ABA78074.2 - 5e-37 127.0 23.4 7.3e-37 126.4 23.4 1.2 1 0 0 1 1 1 1 BioY family FCD PF07729.12 ABA78075.1 - 4.3e-22 78.9 11.3 7.4e-22 78.1 11.3 1.3 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 ABA78075.1 - 2.8e-15 55.7 0.1 6.7e-15 54.5 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 ABA78075.1 - 0.033 14.1 0.1 0.075 13.0 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Dus PF01207.17 ABA78076.1 - 1.1e-71 241.5 0.0 1.3e-71 241.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 ABA78076.1 - 0.00062 19.3 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein TauE PF01925.19 ABA78077.1 - 1.6e-45 155.6 43.1 2e-45 155.3 43.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DnaB_C PF03796.15 ABA78078.1 - 1.4e-102 342.4 0.0 1.8e-102 342.1 0.0 1.1 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 ABA78078.1 - 1.5e-26 92.5 0.1 3.4e-26 91.3 0.1 1.6 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 ABA78078.1 - 8.3e-14 51.6 0.0 1.5e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 ABA78078.1 - 0.0079 16.6 0.0 0.087 13.3 0.0 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 ABA78078.1 - 0.011 16.0 0.2 0.33 11.2 0.2 2.9 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 ABA78078.1 - 0.05 12.9 0.0 0.13 11.6 0.0 1.8 2 1 0 2 2 2 0 KaiC TniB PF05621.11 ABA78078.1 - 0.055 12.9 0.0 1.9 7.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 ABA78078.1 - 0.11 12.9 1.3 0.17 12.2 0.1 2.0 2 1 0 2 2 2 0 AAA ATPase domain Rad51 PF08423.11 ABA78078.1 - 0.15 11.3 0.0 3.7 6.7 0.0 2.3 2 0 0 2 2 2 0 Rad51 Pribosyltran PF00156.27 ABA78079.1 - 6.3e-14 51.8 0.0 9.7e-14 51.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ATPgrasp_N PF18130.1 ABA78079.1 - 0.15 12.6 0.2 0.97 10.0 0.1 2.3 3 0 0 3 3 3 0 ATP-grasp N-terminal domain Amidohydro_1 PF01979.20 ABA78080.1 - 8.1e-12 45.1 0.0 1.2e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family AAA_5 PF07728.14 ABA78081.1 - 3.8e-11 43.1 0.0 4.3e-10 39.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA78081.1 - 2.1e-09 37.9 0.0 8.6e-09 35.9 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 ABA78081.1 - 1.7e-07 31.2 0.0 0.0059 16.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 ABA78081.1 - 3.5e-06 26.2 0.0 5.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region AAA_22 PF13401.6 ABA78081.1 - 2.7e-05 24.5 0.0 7.4e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA78081.1 - 6.8e-05 23.3 5.5 0.00016 22.1 0.9 2.8 1 1 1 2 2 2 1 AAA ATPase domain NACHT PF05729.12 ABA78081.1 - 0.0036 17.2 0.5 0.053 13.4 0.0 2.3 2 1 0 2 2 2 1 NACHT domain RuvB_N PF05496.12 ABA78081.1 - 0.0049 16.6 0.0 0.71 9.6 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 ABA78081.1 - 0.011 15.7 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 ABA78081.1 - 0.014 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 ABA78081.1 - 0.015 15.4 0.0 0.31 11.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 ABA78081.1 - 0.022 15.1 0.0 0.11 12.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA78081.1 - 0.029 14.9 0.1 0.058 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 ABA78081.1 - 0.031 14.4 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PIF1 PF05970.14 ABA78081.1 - 0.049 12.8 0.0 0.14 11.3 0.0 1.6 2 0 0 2 2 2 0 PIF1-like helicase TIP49 PF06068.13 ABA78081.1 - 0.057 12.6 0.1 0.11 11.7 0.1 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain RNA_helicase PF00910.22 ABA78081.1 - 0.062 13.7 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.16 ABA78081.1 - 0.09 12.2 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 ABA78081.1 - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 ABA78081.1 - 0.11 12.1 0.0 0.57 9.9 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain VWA_CoxE PF05762.14 ABA78082.1 - 2.3e-69 233.2 3.1 3.8e-69 232.5 3.1 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 ABA78082.1 - 0.00014 22.5 0.0 0.00035 21.2 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 ABA78082.1 - 0.0011 19.3 0.0 0.0016 18.7 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain ABC_tran_2 PF16949.5 ABA78082.1 - 0.27 10.0 0.0 0.38 9.5 0.0 1.1 1 0 0 1 1 1 0 Putative ATP-binding cassette Remorin_N PF03766.13 ABA78083.1 - 1.6 8.8 7.4 9.1 6.4 0.1 3.0 2 1 1 3 3 3 0 Remorin, N-terminal region OmpA PF00691.20 ABA78084.1 - 3.4e-19 69.0 1.7 1.6e-18 66.8 0.0 2.9 2 0 0 2 2 2 1 OmpA family DUF3509 PF12021.8 ABA78084.1 - 0.11 12.3 1.9 0.21 11.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) F-112 PF09645.10 ABA78084.1 - 0.21 11.7 0.7 0.51 10.5 0.7 1.6 1 0 0 1 1 1 0 F-112 protein Myosin_N PF02736.19 ABA78084.1 - 0.21 11.4 0.4 0.96 9.3 0.1 2.2 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain XdhC_C PF13478.6 ABA78085.2 - 6.4e-41 139.8 0.1 9.8e-41 139.2 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 ABA78085.2 - 2.7e-23 82.0 3.8 2.7e-23 82.0 3.8 2.5 2 0 0 2 2 2 1 XdhC and CoxI family HlyD_D4 PF16572.5 ABA78085.2 - 0.082 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB MoCF_biosynth PF00994.24 ABA78087.1 - 0.00026 20.7 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain HlyD_D23 PF16576.5 ABA78087.1 - 0.013 14.7 0.0 0.055 12.7 0.0 1.8 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF3_C PF00707.22 ABA78088.2 - 7.8e-38 128.3 0.6 1.2e-37 127.7 0.6 1.3 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.16 ABA78088.2 - 3.1e-31 107.5 0.0 5.1e-31 106.8 0.0 1.4 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain Mitofilin PF09731.9 ABA78089.2 - 0.002 17.0 18.7 0.0025 16.7 18.7 1.1 1 0 0 1 1 1 1 Mitochondrial inner membrane protein IFT57 PF10498.9 ABA78089.2 - 0.24 10.3 1.2 0.32 9.9 1.2 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 SpoIIIAH PF12685.7 ABA78089.2 - 0.28 11.0 20.7 1.7 8.4 20.7 2.1 1 1 0 1 1 1 0 SpoIIIAH-like protein SAPS PF04499.15 ABA78089.2 - 1.7 7.3 8.2 2.1 7.0 8.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Presenilin PF01080.17 ABA78089.2 - 3.3 6.4 4.8 3.6 6.2 4.8 1.2 1 0 0 1 1 1 0 Presenilin GREB1 PF15782.5 ABA78089.2 - 8.4 3.4 5.9 9 3.3 5.9 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer NAD_binding_1 PF00175.21 ABA78090.1 - 2.5e-08 34.5 0.0 3.8e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 ABA78090.1 - 8e-08 32.5 0.0 1.6e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 ABA78090.1 - 0.066 13.3 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DUF934 PF06073.12 ABA78091.1 - 2.8e-24 85.1 0.1 3.2e-24 84.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF934) PAPS_reduct PF01507.19 ABA78092.2 - 9.7e-40 136.4 0.0 1.2e-39 136.2 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NIR_SIR PF01077.22 ABA78093.1 - 2.6e-54 183.0 0.0 1.1e-41 142.0 0.0 2.5 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 ABA78093.1 - 9.7e-37 124.7 0.1 8.6e-18 64.0 0.1 2.5 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DUF2849 PF11011.8 ABA78094.1 - 3.7e-30 104.4 0.1 4.2e-30 104.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2849) TP_methylase PF00590.20 ABA78095.1 - 5.4e-39 134.3 2.3 7.2e-39 133.9 2.3 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases AsnC_trans_reg PF01037.21 ABA78096.1 - 2e-17 62.9 0.4 3.9e-17 62.0 0.1 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 ABA78096.1 - 1.2e-16 60.3 0.8 3e-16 59.0 0.8 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 ABA78096.1 - 2.9e-15 55.6 0.1 5.6e-15 54.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 ABA78096.1 - 9.9e-06 25.5 0.3 0.00021 21.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 ABA78096.1 - 0.00034 20.5 0.4 0.0012 18.7 0.2 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 ABA78096.1 - 0.0012 18.6 0.8 0.0022 17.9 0.2 1.6 2 0 0 2 2 2 1 MarR family PrgU PF09627.10 ABA78096.1 - 0.006 16.5 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 PrgU-like protein TrmB PF01978.19 ABA78096.1 - 0.017 15.0 0.2 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Mor PF08765.11 ABA78096.1 - 0.027 14.5 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Mor transcription activator family MarR PF01047.22 ABA78096.1 - 0.027 14.4 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 MarR family Sun2_CC2 PF18580.1 ABA78096.1 - 0.04 14.1 0.2 0.098 12.9 0.2 1.7 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 HTH_Tnp_ISL3 PF13542.6 ABA78096.1 - 0.084 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 p450 PF00067.22 ABA78097.1 - 7.2e-23 81.1 0.2 5.4e-17 61.7 0.2 3.0 3 0 0 3 3 3 3 Cytochrome P450 PP2C_2 PF13672.6 ABA78097.1 - 0.037 13.7 0.1 0.054 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C TIM PF00121.18 ABA78098.1 - 3.8e-75 252.4 0.0 4.2e-75 252.2 0.0 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase Fe-S_biosyn PF01521.20 ABA78099.1 - 2.3e-22 79.3 0.0 2.6e-22 79.1 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis FeS_assembly_P PF01883.19 ABA78100.1 - 2.2e-17 63.0 0.2 3.2e-17 62.5 0.2 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF982 PF06169.12 ABA78102.1 - 3e-21 75.2 0.5 3e-21 75.2 0.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF982) CSD PF00313.22 ABA78103.2 - 5.6e-25 87.0 0.0 6e-25 86.9 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA78103.2 - 0.0018 17.9 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain cNMP_binding PF00027.29 ABA78104.1 - 6.1e-13 48.7 0.0 9.8e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 ABA78104.1 - 2.1e-12 46.9 0.1 5.1e-12 45.6 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 ABA78104.1 - 0.0088 15.7 1.9 0.014 15.1 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory proteins, crp family GyrI-like PF06445.15 ABA78110.1 - 0.055 13.8 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 GyrI-like small molecule binding domain Biotin_lipoyl_2 PF13533.6 ABA78113.1 - 5.3e-11 42.2 0.1 5.3e-11 42.2 0.1 3.7 6 0 0 6 6 6 1 Biotin-lipoyl like HlyD_3 PF13437.6 ABA78113.1 - 3.1e-07 31.1 0.8 0.00056 20.6 0.3 2.6 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl PF00364.22 ABA78113.1 - 2.3e-05 24.1 0.0 0.00038 20.2 0.1 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD_D23 PF16576.5 ABA78113.1 - 0.00072 18.8 6.5 0.011 14.9 6.5 2.6 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HNH PF01844.23 ABA78114.1 - 4.9e-07 29.8 0.0 7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 ABA78114.1 - 0.021 14.7 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 HNH endonuclease Endonuclease_7 PF02945.15 ABA78114.1 - 0.03 14.3 0.3 0.057 13.3 0.3 1.5 1 1 0 1 1 1 0 Recombination endonuclease VII rve PF00665.26 ABA78115.2 - 6e-21 74.8 0.0 1.2e-20 73.9 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 ABA78115.2 - 1.3e-17 63.3 0.2 5.9e-17 61.2 0.1 2.0 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 ABA78115.2 - 1.5e-05 25.0 0.0 0.00028 20.9 0.0 2.2 2 0 0 2 2 2 1 HTH-like domain HTH_32 PF13565.6 ABA78115.2 - 0.0014 19.2 0.6 0.0063 17.1 0.0 2.4 4 0 0 4 4 4 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.18 ABA78115.2 - 0.0015 18.7 0.0 0.0034 17.6 0.0 1.6 1 0 0 1 1 1 1 Transposase Phage_integrase PF00589.22 ABA78116.1 - 1.8e-11 44.1 0.0 2.9e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family AIRS_C PF02769.22 ABA78117.1 - 5.7e-40 137.0 0.3 9e-40 136.3 0.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 ABA78117.1 - 1.8e-16 60.6 2.4 2.6e-16 60.0 1.5 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DRTGG PF07085.12 ABA78117.1 - 0.13 12.0 0.1 0.29 11.0 0.1 1.5 1 0 0 1 1 1 0 DRTGG domain Formyl_trans_N PF00551.19 ABA78118.2 - 1.1e-52 178.4 0.0 1.2e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase DNA_pol_A_exo1 PF01612.20 ABA78119.1 - 1.6e-33 115.9 0.0 2.2e-33 115.4 0.0 1.2 1 0 0 1 1 1 1 3'-5' exonuclease HRDC PF00570.23 ABA78119.1 - 7.7e-13 48.2 2.5 1.9e-11 43.8 0.2 2.8 2 1 0 2 2 2 2 HRDC domain Cytochrome-c551 PF10643.9 ABA78119.1 - 0.055 13.0 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 SufE PF02657.15 ABA78121.1 - 1.6e-42 144.2 0.0 1.8e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain NTP_transf_9 PF04248.12 ABA78122.1 - 1.8e-27 95.1 0.0 2.1e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) Peptidase_M24 PF00557.24 ABA78123.1 - 2e-47 161.6 0.0 3e-47 161.0 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N_2 PF16189.5 ABA78123.1 - 1.3e-34 119.6 0.0 2e-34 119.0 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Peptidase_M24_C PF16188.5 ABA78123.1 - 3e-21 75.2 0.0 7.5e-21 74.0 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of peptidase_M24 Creatinase_N PF01321.18 ABA78123.1 - 2.5e-19 70.2 0.0 2.3e-16 60.7 0.0 2.4 2 0 0 2 2 2 2 Creatinase/Prolidase N-terminal domain CobT_C PF11775.8 ABA78124.1 - 3.9e-103 343.8 0.1 5.8e-103 343.2 0.1 1.3 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain CobT PF06213.12 ABA78124.1 - 3.7e-91 305.3 16.4 5.4e-91 304.8 16.4 1.2 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA PF00092.28 ABA78124.1 - 0.00011 22.6 0.0 0.014 15.7 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 ABA78124.1 - 0.013 16.2 0.0 2.7 8.7 0.0 3.1 3 0 0 3 3 3 0 von Willebrand factor type A domain VWA_CoxE PF05762.14 ABA78124.1 - 0.017 14.5 0.5 0.2 11.0 0.1 2.2 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein SDA1 PF05285.12 ABA78124.1 - 0.12 11.8 10.5 0.18 11.2 10.5 1.2 1 0 0 1 1 1 0 SDA1 DUF3646 PF12362.8 ABA78124.1 - 0.12 12.7 0.4 2.3 8.5 0.1 2.5 2 0 0 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal CDC45 PF02724.14 ABA78124.1 - 1.5 7.1 9.6 1.9 6.7 9.6 1.1 1 0 0 1 1 1 0 CDC45-like protein SAPS PF04499.15 ABA78124.1 - 3.5 6.3 4.7 5.3 5.7 4.7 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein FUSC_2 PF13515.6 ABA78125.1 - 0.031 14.4 3.9 0.039 14.1 3.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like PhoR PF11808.8 ABA78125.1 - 0.035 14.5 3.9 0.035 14.5 3.9 1.7 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR RP853 PF17542.2 ABA78125.1 - 0.5 9.4 1.0 0.58 9.2 1.0 1.1 1 0 0 1 1 1 0 Uncharacterized RP853 DUF3318 PF11780.8 ABA78125.1 - 7.1 6.6 9.8 9.8 6.1 6.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3318) DUF3040 PF11239.8 ABA78126.1 - 0.73 10.1 7.0 1.4 9.2 7.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CobS_N PF12556.8 ABA78127.2 - 1.7e-15 56.4 0.5 2.9e-15 55.7 0.5 1.4 1 0 0 1 1 1 1 Cobaltochelatase CobS subunit N terminal AAA_5 PF07728.14 ABA78127.2 - 1.3e-12 47.9 0.0 3.1e-12 46.7 0.0 1.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA78127.2 - 0.00026 21.4 0.0 0.00046 20.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbbQ_C PF08406.10 ABA78127.2 - 0.00054 20.2 0.0 0.0011 19.2 0.0 1.4 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal AAA_33 PF13671.6 ABA78127.2 - 0.0021 18.2 0.0 0.0044 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 ABA78127.2 - 0.013 16.0 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 ABA78127.2 - 0.016 15.1 0.0 0.038 13.9 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 ABA78127.2 - 0.037 14.1 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 ABA78127.2 - 0.061 13.7 0.0 0.15 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 ABA78127.2 - 0.062 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 ABA78127.2 - 0.077 13.2 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA78127.2 - 0.11 13.0 0.0 0.32 11.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter DnaJ PF00226.31 ABA78128.1 - 2.6e-08 33.9 0.0 5.5e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain BolA PF01722.18 ABA78129.1 - 8.2e-22 77.3 0.1 9.9e-22 77.0 0.1 1.0 1 0 0 1 1 1 1 BolA-like protein Malate_synthase PF01274.22 ABA78130.2 - 1.3e-156 522.0 0.0 1.5e-156 521.7 0.0 1.0 1 0 0 1 1 1 1 Malate synthase DUF3458_C PF17432.2 ABA78132.1 - 4.6e-98 328.5 0.3 1e-97 327.3 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3458_C) ARM repeats Peptidase_M1 PF01433.20 ABA78132.1 - 5.9e-50 169.8 0.9 1.1e-49 169.0 0.1 1.7 2 0 0 2 2 2 1 Peptidase family M1 domain DUF3458 PF11940.8 ABA78132.1 - 1.8e-27 95.6 0.0 3.1e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Ig-like fold Peptidase_M1_N PF17900.1 ABA78132.1 - 2.8e-09 37.4 0.0 4.4e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain Peptidase_M61 PF05299.12 ABA78132.1 - 0.009 16.4 0.2 0.05 14.0 0.2 2.1 1 1 0 1 1 1 1 M61 glycyl aminopeptidase DUF2268 PF10026.9 ABA78132.1 - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) LcrR PF09621.10 ABA78132.1 - 0.08 12.4 0.4 24 4.4 0.0 3.3 3 0 0 3 3 3 0 Type III secretion system regulator (LcrR) Acyltransferase PF01553.21 ABA78133.1 - 1e-22 80.2 0.0 1.5e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 Acyltransferase PrmC_N PF17827.1 ABA78133.1 - 0.069 13.7 0.0 2.2 8.9 0.0 2.5 2 0 0 2 2 2 0 PrmC N-terminal domain Aminotran_1_2 PF00155.21 ABA78134.2 - 1.8e-38 132.7 0.0 2.2e-38 132.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II HicB PF05534.12 ABA78134.2 - 2.9 7.8 4.4 4.9 7.1 0.4 2.6 2 0 0 2 2 2 0 HicB family DUF4177 PF13783.6 ABA78135.1 - 1.1e-06 28.9 0.0 1.7e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) GatB_N PF02934.15 ABA78136.1 - 4.6e-110 367.3 0.0 5.8e-110 367.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 ABA78136.1 - 1.5e-45 154.7 0.1 2.1e-45 154.2 0.1 1.2 1 0 0 1 1 1 1 GatB domain SLT PF01464.20 ABA78137.1 - 3.8e-07 29.8 0.0 5.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase SLT domain DUF1992 PF09350.10 ABA78138.1 - 8.8e-16 57.8 0.2 1.5e-15 57.1 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1992) tRNA-synt_1 PF00133.22 ABA78139.1 - 2.1e-196 653.8 0.1 4e-143 477.8 0.0 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 ABA78139.1 - 8.8e-34 116.7 0.0 1.9e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 ABA78139.1 - 3.1e-20 72.3 0.2 2.5e-07 29.8 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) Val_tRNA-synt_C PF10458.9 ABA78139.1 - 6e-20 71.3 0.8 1.4e-19 70.1 0.8 1.7 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1e PF01406.19 ABA78139.1 - 9e-07 28.5 0.0 0.00042 19.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 ABA78139.1 - 3.4e-06 26.7 0.0 7.4e-05 22.3 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 ABC_tran_CTD PF16326.5 ABA78139.1 - 0.055 13.7 0.7 0.24 11.6 0.7 2.1 1 0 0 1 1 1 0 ABC transporter C-terminal domain tRNA-synt_1f PF01921.18 ABA78139.1 - 0.059 12.3 0.0 0.095 11.6 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (K) HTH_AsnC-type PF13404.6 ABA78140.1 - 4.8e-13 48.7 3.7 1.5e-12 47.2 3.7 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 ABA78140.1 - 2.3e-12 46.7 0.1 3.7e-12 46.0 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 ABA78140.1 - 1.1e-11 44.1 0.5 1.9e-11 43.3 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 ABA78140.1 - 4.9e-05 23.1 2.4 0.00015 21.5 2.4 2.0 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.12 ABA78140.1 - 0.00082 19.3 1.4 0.00087 19.2 0.3 1.6 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 ABA78140.1 - 0.0011 19.0 2.0 0.0051 16.8 0.2 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 ABA78140.1 - 0.0019 18.2 1.0 0.0032 17.4 1.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.19 ABA78140.1 - 0.0063 16.7 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 ABA78140.1 - 0.0088 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB NapD PF03927.13 ABA78140.1 - 0.014 15.4 0.1 0.028 14.5 0.1 1.5 1 0 0 1 1 1 0 NapD protein DprA_WH PF17782.1 ABA78140.1 - 0.024 14.8 0.2 0.024 14.8 0.2 2.4 3 0 0 3 3 3 0 DprA winged helix domain HTH_IclR PF09339.10 ABA78140.1 - 0.027 14.3 0.9 0.085 12.7 0.5 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_30 PF13556.6 ABA78140.1 - 0.039 13.7 3.0 0.047 13.5 0.4 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 ABA78140.1 - 0.044 14.0 0.1 0.072 13.3 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_36 PF13730.6 ABA78140.1 - 0.048 13.6 0.1 0.078 12.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 ABA78140.1 - 0.05 13.5 0.1 0.17 11.8 0.1 1.9 2 0 0 2 2 2 0 MarR family HTH_41 PF14502.6 ABA78140.1 - 0.09 12.5 0.1 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Orn_Arg_deC_N PF02784.16 ABA78141.1 - 6.4e-32 110.9 0.0 8.2e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 ABA78141.1 - 4.8e-10 39.6 0.0 5e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 ABA78141.1 - 0.0032 17.2 0.0 0.0044 16.7 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain AP_endonuc_2 PF01261.24 ABA78141.1 - 0.012 15.1 0.1 0.28 10.6 0.0 2.2 2 1 1 4 4 4 0 Xylose isomerase-like TIM barrel DUF2235 PF09994.9 ABA78142.2 - 9.2e-61 205.7 0.0 1.2e-60 205.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized alpha/beta hydrolase domain (DUF2235) 4HBT PF03061.22 ABA78143.1 - 3.1e-12 46.7 0.3 5.2e-12 46.0 0.3 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 ABA78143.1 - 6.4e-07 29.6 0.0 1.3e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) Citrate_synt PF00285.21 ABA78144.1 - 4.1e-132 440.6 0.0 4.7e-132 440.4 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain tRNA-synt_1c PF00749.21 ABA78145.1 - 1.9e-93 312.8 0.0 2.4e-93 312.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain HTH_20 PF12840.7 ABA78145.1 - 0.043 13.9 0.0 2.2 8.4 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain PA_decarbox PF05870.11 ABA78145.1 - 0.13 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Phenolic acid decarboxylase (PAD) Competence PF03772.16 ABA78146.2 - 2.2e-61 207.6 34.1 2.2e-61 207.6 34.1 2.3 2 0 0 2 2 2 1 Competence protein DUF4131 PF13567.6 ABA78146.2 - 6.9e-15 55.1 2.6 6.9e-15 55.1 2.6 4.5 3 2 0 3 3 3 1 Domain of unknown function (DUF4131) LexA_DNA_bind PF01726.16 ABA78147.1 - 2.5e-16 59.2 0.1 5.9e-16 58.0 0.1 1.7 1 0 0 1 1 1 1 LexA DNA binding domain Peptidase_S24 PF00717.23 ABA78147.1 - 3.4e-14 52.5 0.1 5.4e-14 51.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like MarR_2 PF12802.7 ABA78147.1 - 0.0084 16.0 0.1 0.018 14.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 ABA78147.1 - 0.0097 15.7 0.0 0.025 14.4 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 ABA78147.1 - 0.03 14.3 0.1 0.075 13.0 0.0 1.7 2 0 0 2 2 2 0 MarR family MoeA_N PF03453.17 ABA78148.1 - 2.3e-36 124.9 1.8 3.7e-36 124.3 1.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 ABA78148.1 - 5.2e-20 71.6 0.0 8.6e-20 70.9 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 ABA78148.1 - 1.8e-17 63.2 0.2 6.4e-17 61.5 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoaC PF01967.21 ABA78149.1 - 1.5e-56 190.3 2.5 1.7e-56 190.1 2.5 1.0 1 0 0 1 1 1 1 MoaC family DUF2218 PF09981.9 ABA78149.1 - 0.071 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) IGPS PF00218.21 ABA78150.1 - 3.9e-95 317.8 0.0 4.4e-95 317.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 ABA78150.1 - 0.0095 15.0 0.1 0.021 13.9 0.1 1.7 1 1 0 1 1 1 1 FMN-dependent dehydrogenase QRPTase_C PF01729.19 ABA78150.1 - 0.026 14.3 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glycos_transf_3 PF00591.21 ABA78151.1 - 6.8e-91 304.4 1.6 9.1e-91 303.9 1.6 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 ABA78151.1 - 1.3e-16 60.1 2.8 2.3e-16 59.4 1.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase PF00117.28 ABA78152.1 - 2.5e-55 187.2 0.0 2.8e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 ABA78152.1 - 8.4e-13 48.6 0.2 3.7e-12 46.5 0.2 1.8 1 1 0 1 1 1 1 Peptidase C26 Polysacc_deac_2 PF04748.13 ABA78153.1 - 7.7e-33 113.5 0.0 4.9e-32 110.8 0.0 1.9 1 1 0 1 1 1 1 Divergent polysaccharide deacetylase Chorismate_bind PF00425.18 ABA78154.1 - 4.6e-97 324.6 0.0 1.5e-96 322.9 0.0 1.8 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 ABA78154.1 - 4.6e-32 111.2 0.0 1.9e-30 105.9 0.0 2.9 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region Rotamase_2 PF13145.6 ABA78155.1 - 2.9e-35 121.7 11.0 5.5e-19 69.2 0.1 4.4 3 1 1 4 4 4 4 PPIC-type PPIASE domain SurA_N_3 PF13624.6 ABA78155.1 - 3.4e-35 121.2 0.0 3.3e-34 118.0 0.0 2.2 2 0 0 2 2 2 1 SurA N-terminal domain SurA_N_2 PF13623.6 ABA78155.1 - 1.3e-18 67.3 0.0 3.6e-18 65.8 0.0 1.7 2 0 0 2 2 2 1 SurA N-terminal domain SurA_N PF09312.11 ABA78155.1 - 0.0042 17.2 0.0 0.018 15.1 0.0 2.1 1 0 0 1 1 1 1 SurA N-terminal domain Rotamase PF00639.21 ABA78155.1 - 0.023 15.6 0.2 6.7 7.7 0.0 3.3 3 0 0 3 3 3 0 PPIC-type PPIASE domain NDUF_C2 PF06374.11 ABA78155.1 - 0.028 14.6 0.0 0.061 13.5 0.0 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) SUV3_C PF12513.8 ABA78155.1 - 0.22 11.5 0.2 5.2 7.1 0.1 2.4 2 0 0 2 2 2 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF5471 PF17565.2 ABA78155.1 - 2.9 8.2 6.9 37 4.7 0.2 3.0 2 0 0 2 2 2 0 Family of unknown function (DUF5471) AsmA PF05170.14 ABA78156.1 - 2.5e-30 105.9 0.0 1e-17 64.2 0.0 2.6 3 0 0 3 3 3 2 AsmA family AsmA_2 PF13502.6 ABA78156.1 - 2.6e-20 72.9 13.0 5.1e-20 72.0 4.9 3.2 1 1 2 3 3 3 3 AsmA-like C-terminal region DUF748 PF05359.11 ABA78156.1 - 0.00014 22.1 0.2 0.0027 17.9 0.0 3.3 2 1 0 2 2 2 1 Domain of Unknown Function (DUF748) GcrA PF07750.11 ABA78157.1 - 5e-49 166.8 3.2 6.5e-48 163.2 3.2 2.0 1 1 0 1 1 1 1 GcrA cell cycle regulator HTH_7 PF02796.15 ABA78157.1 - 0.0018 18.3 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 ABA78157.1 - 0.007 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA78157.1 - 0.015 15.1 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 ABA78157.1 - 0.17 11.5 0.0 0.36 10.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Aminotran_3 PF00202.21 ABA78158.1 - 1.8e-111 372.7 0.0 2.3e-111 372.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 ABA78158.1 - 0.019 13.9 0.0 0.15 11.0 0.0 2.2 1 1 0 1 1 1 0 Aminotransferase class-V OTCace PF00185.24 ABA78159.1 - 1.4e-50 171.4 0.0 2.1e-50 170.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 ABA78159.1 - 4.9e-48 162.9 0.2 8.2e-48 162.2 0.2 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GreA_GreB PF01272.19 ABA78161.1 - 1.7e-19 69.5 0.0 2.4e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term Phage_TAC_14 PF16462.5 ABA78161.1 - 0.097 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Phage tail assembly chaperone protein, TAC NUDIX PF00293.28 ABA78162.2 - 1.3e-11 44.6 0.0 1.5e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF5429 PF17494.2 ABA78162.2 - 0.072 13.1 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5429) HrpB_C PF08482.10 ABA78163.1 - 4.1e-49 166.4 0.0 8.4e-49 165.4 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent helicase C-terminal HA2 PF04408.23 ABA78163.1 - 1.6e-08 34.8 0.1 3.4e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Helicase associated domain (HA2) Helicase_C PF00271.31 ABA78163.1 - 3.3e-08 33.9 0.0 5.2e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 ABA78163.1 - 1.5e-05 24.9 0.0 2.5e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 ABA78163.1 - 0.014 15.1 0.9 0.028 14.1 0.9 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 ABA78163.1 - 0.025 14.9 0.1 0.05 13.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain Flavi_DEAD PF07652.14 ABA78163.1 - 0.13 12.2 0.2 0.24 11.4 0.2 1.4 1 0 0 1 1 1 0 Flavivirus DEAD domain SIMPL PF04402.14 ABA78163.1 - 0.21 12.0 2.5 17 5.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF541) ResIII PF04851.15 ABA78163.1 - 0.3 11.1 0.0 0.43 10.5 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF3108 PF11306.8 ABA78164.1 - 4.8e-18 66.0 0.2 7.2e-18 65.4 0.1 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3108) MeaB PF03308.16 ABA78165.1 - 4.9e-93 311.0 0.1 6e-93 310.7 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 ABA78165.1 - 2.2e-06 27.4 0.3 2.8e-05 23.8 0.3 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.15 ABA78165.1 - 0.0067 15.7 0.5 0.011 14.9 0.5 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 ABA78165.1 - 0.0069 16.4 0.0 0.0098 15.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 ABA78165.1 - 0.0081 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 ABA78165.1 - 0.011 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ParA PF10609.9 ABA78165.1 - 0.011 15.2 0.1 0.017 14.6 0.1 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 ABA78165.1 - 0.011 16.1 2.0 0.019 15.3 1.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 ABA78165.1 - 0.024 14.6 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.6 ABA78165.1 - 0.027 15.0 0.2 0.07 13.7 0.2 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 ABA78165.1 - 0.04 13.5 0.0 0.25 11.0 0.0 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.23 ABA78165.1 - 0.089 12.9 0.2 0.32 11.1 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 ABA78165.1 - 0.14 12.5 0.0 0.93 9.9 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Ribosomal_L28 PF00830.19 ABA78166.1 - 2.8e-23 81.9 0.0 4e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L28 family DUF3198 PF11433.8 ABA78166.1 - 0.094 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) PCuAC PF04314.13 ABA78168.1 - 2.1e-40 136.9 0.4 2.8e-40 136.5 0.4 1.2 1 0 0 1 1 1 1 Copper chaperone PCu(A)C APS-reductase_C PF12139.8 ABA78168.1 - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenosine-5'-phosphosulfate reductase beta subunit GlgX_C PF18390.1 ABA78169.1 - 0.043 13.6 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycogen debranching enzyme C-terminal domain SpoIIAA-like PF11964.8 ABA78170.1 - 3.7e-12 47.1 0.0 4.5e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 SpoIIAA-like DHC PF09626.10 ABA78171.1 - 1.1e-38 132.8 0.0 1.4e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Dihaem cytochrome c Paired_CXXCH_1 PF09699.10 ABA78171.1 - 0.00049 19.8 0.9 0.75 9.6 0.1 2.4 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 ABA78171.1 - 0.0073 16.3 0.1 1.7 8.7 0.0 2.2 2 0 0 2 2 2 2 Cytochrome c7 and related cytochrome c Cytochrome_CBB3 PF13442.6 ABA78171.1 - 0.011 16.0 0.1 2.4 8.5 0.1 2.4 2 0 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III PSCyt3 PF07627.11 ABA78171.1 - 0.079 13.2 0.1 2.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) Cytochrome_P460 PF16694.5 ABA78171.1 - 0.18 12.2 0.3 7.9 6.9 0.1 2.1 2 0 0 2 2 2 0 Cytochrome P460 Cytochrom_C PF00034.21 ABA78171.1 - 0.49 11.6 5.5 2 9.6 0.2 2.6 2 1 0 2 2 2 0 Cytochrome c zf-RING_7 PF02591.15 ABA78171.1 - 0.52 10.5 0.1 0.52 10.5 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF1924 PF09086.11 ABA78172.1 - 2.9e-36 123.7 0.0 3.4e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1924) Cytochrome_CBB3 PF13442.6 ABA78172.1 - 0.0048 17.2 0.2 0.013 15.8 0.1 1.9 2 1 0 2 2 2 1 Cytochrome C oxidase, cbb3-type, subunit III CCP_MauG PF03150.14 ABA78172.1 - 0.0077 16.9 0.0 0.0087 16.7 0.0 1.1 1 0 0 1 1 1 1 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.21 ABA78172.1 - 0.016 16.4 0.1 0.051 14.7 0.1 1.9 1 1 0 1 1 1 0 Cytochrome c Zn_Tnp_IS1 PF03811.13 ABA78172.1 - 0.066 12.9 0.9 0.14 11.9 0.4 1.8 2 0 0 2 2 2 0 InsA N-terminal domain DHC PF09626.10 ABA78173.1 - 1.5e-36 125.8 0.0 2e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Dihaem cytochrome c Ni_hydr_CYTB PF01292.20 ABA78173.1 - 1e-20 74.1 17.9 2e-20 73.1 16.5 1.9 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 ABA78173.1 - 0.0002 21.8 10.3 0.0002 21.8 10.3 3.1 4 0 0 4 4 4 1 Domain of unknown function (DUF4405) Paired_CXXCH_1 PF09699.10 ABA78173.1 - 0.004 16.9 0.8 2.9 7.7 0.1 2.4 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 ABA78173.1 - 0.074 13.1 0.0 7.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c zf-C2H2_3 PF13878.6 ABA78173.1 - 0.16 11.8 0.7 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF4079 PF13301.6 ABA78173.1 - 1.4 9.1 10.0 0.18 11.9 2.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4079) zf-RING_7 PF02591.15 ABA78173.1 - 3.2 8.0 5.3 2 8.7 0.2 2.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain CSD PF00313.22 ABA78175.1 - 6.1e-25 86.9 0.0 6.4e-25 86.8 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA78175.1 - 0.0022 17.6 0.1 0.0025 17.4 0.1 1.4 1 1 0 1 1 1 1 Ribonuclease B OB domain HTH_18 PF12833.7 ABA78177.1 - 8.6e-22 77.2 2.0 1.7e-21 76.3 2.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 ABA78177.1 - 0.0072 16.2 0.0 0.019 14.9 0.0 1.6 2 0 0 2 2 2 1 AraC-like ligand binding domain HTH_20 PF12840.7 ABA78177.1 - 0.026 14.6 2.9 0.1 12.7 0.4 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain LysR_substrate PF03466.20 ABA78178.2 - 6.4e-33 113.9 6.0 6.4e-33 113.9 6.0 1.6 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA78178.2 - 2e-18 66.1 4.7 5.4e-18 64.7 4.7 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 ABA78178.2 - 0.059 12.8 0.2 0.22 11.0 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 SnoaL_2 PF12680.7 ABA78179.1 - 6.4e-08 33.2 0.4 7.2e-08 33.0 0.4 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 ABA78179.1 - 0.015 15.7 0.1 0.018 15.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Lumazine_bd_2 PF12893.7 ABA78179.1 - 0.16 12.7 0.0 0.18 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative lumazine-binding adh_short_C2 PF13561.6 ABA78180.1 - 1.4e-37 129.5 0.1 4.9e-37 127.7 0.1 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78180.1 - 2.5e-32 111.9 0.0 3.7e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase DUF1776 PF08643.10 ABA78180.1 - 0.0045 16.4 0.0 0.0059 16.0 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 ABA78180.1 - 0.08 12.4 0.0 0.16 11.4 0.0 1.5 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family HWE_HK PF07536.14 ABA78181.2 - 7e-14 52.3 0.9 1.2e-13 51.6 0.9 1.4 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 ABA78181.2 - 0.0016 18.4 0.0 0.0053 16.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_2 PF07568.12 ABA78181.2 - 0.0034 17.4 1.7 0.0055 16.8 1.7 1.4 1 0 0 1 1 1 1 Histidine kinase PAS_4 PF08448.10 ABA78181.2 - 0.011 15.9 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 PAS fold PPC PF04151.15 ABA78182.1 - 0.0037 18.3 1.7 0.0065 17.5 1.7 1.4 1 0 0 1 1 1 1 Bacterial pre-peptidase C-terminal domain BclA_C PF18573.1 ABA78182.1 - 0.014 15.3 0.9 0.049 13.5 0.3 2.0 1 1 1 2 2 2 0 BclA C-terminal domain CPBP PF02517.16 ABA78184.1 - 3.9e-05 23.9 13.0 0.00022 21.6 13.0 2.4 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease HPP PF04982.13 ABA78184.1 - 1.7 8.9 12.0 0.06 13.5 2.0 2.8 2 2 0 2 2 2 0 HPP family Phage_holin_3_6 PF07332.11 ABA78185.1 - 0.021 14.8 10.8 0.021 14.8 10.8 1.9 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III FixQ PF05545.11 ABA78185.1 - 0.56 10.2 4.4 3.7 7.6 0.1 2.5 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF2207 PF09972.9 ABA78185.1 - 0.58 8.9 2.5 0.62 8.8 2.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PRA1 PF03208.19 ABA78185.1 - 1.7 8.3 7.9 0.19 11.4 4.0 1.4 2 0 0 2 2 2 0 PRA1 family protein DUF2975 PF11188.8 ABA78185.1 - 2.7 7.9 9.0 0.32 10.9 5.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) CoatB PF10389.9 ABA78185.1 - 4 7.4 8.4 2.4 8.0 0.1 2.7 3 0 0 3 3 3 0 Bacteriophage coat protein B Yip1 PF04893.17 ABA78186.2 - 0.0056 16.4 11.4 0.0074 16.0 10.2 1.9 1 1 0 1 1 1 1 Yip1 domain CPP1-like PF11833.8 ABA78186.2 - 3.7 7.1 7.4 5.3 6.6 1.5 2.4 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Acetyltransf_7 PF13508.7 ABA78189.1 - 4.4e-15 55.9 0.0 6.2e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA78189.1 - 6.2e-13 48.8 0.0 7.3e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA78189.1 - 3.5e-12 46.6 0.1 5.8e-12 45.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 ABA78189.1 - 1.6e-07 31.2 0.0 2.4e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 ABA78189.1 - 0.014 16.1 0.0 0.023 15.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA78189.1 - 0.041 14.0 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain adh_short_C2 PF13561.6 ABA78190.1 - 3.3e-64 216.6 1.1 3.8e-64 216.5 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78190.1 - 1.9e-50 171.1 0.1 2.4e-50 170.7 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78190.1 - 4.1e-11 43.1 0.1 6e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 KR domain AAA_16 PF13191.6 ABA78195.2 - 8.2e-06 26.3 0.0 1.6e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DAP3 PF10236.9 ABA78195.2 - 0.00016 21.0 0.0 0.00077 18.7 0.0 1.9 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 DUF815 PF05673.13 ABA78195.2 - 0.00018 20.8 0.1 0.11 11.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA PF00004.29 ABA78195.2 - 0.00018 21.9 1.1 0.048 14.1 1.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA78195.2 - 0.00025 21.3 0.0 0.21 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 ABA78195.2 - 0.0012 18.3 0.0 0.043 13.3 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region ATPase_2 PF01637.18 ABA78195.2 - 0.0015 18.5 2.9 0.014 15.3 2.0 2.6 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 ABA78195.2 - 0.029 14.1 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 ABA78195.2 - 0.035 14.1 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 ABA78195.2 - 0.14 12.4 0.0 0.62 10.3 0.0 2.1 3 0 0 3 3 3 0 AAA domain SAVED PF18145.1 ABA78196.1 - 2.1e-31 109.2 0.0 3.2e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 SMODS-associated and fused to various effectors sensor domain SMODS PF18144.1 ABA78197.1 - 1e-24 87.6 0.1 6.5e-21 75.2 0.0 2.2 2 0 0 2 2 2 2 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Prok-E2_A PF14457.6 ABA78198.1 - 5.6e-53 178.9 0.0 9.1e-53 178.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic E2 family A ThiF PF00899.21 ABA78198.1 - 1.8e-14 53.7 0.0 2.8e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 ABA78198.1 - 0.00011 22.2 0.1 0.00025 21.1 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Prok-JAB PF14464.6 ABA78199.1 - 5.8e-19 68.0 0.1 7.2e-19 67.7 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 ABA78199.1 - 0.00018 21.5 0.0 0.00035 20.5 0.0 1.4 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease UPF0172 PF03665.13 ABA78199.1 - 0.14 12.2 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0172) Peptidase_M15_4 PF13539.6 ABA78201.1 - 7.5e-08 32.8 0.1 8.2e-07 29.4 0.1 2.4 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase PG_binding_1 PF01471.18 ABA78201.1 - 9.5e-07 28.9 0.0 0.016 15.4 0.0 2.3 2 0 0 2 2 2 2 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA78201.1 - 0.00054 20.2 1.4 0.21 11.9 0.0 2.3 1 1 1 2 2 2 2 Predicted Peptidoglycan domain PG_binding_2 PF08823.11 ABA78201.1 - 0.0096 16.2 0.1 0.26 11.7 0.0 2.2 1 1 1 2 2 2 1 Putative peptidoglycan binding domain MethyltransfD12 PF02086.15 ABA78202.1 - 7.8e-16 58.5 0.0 1.1e-15 58.1 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase EamA PF00892.20 ABA78203.1 - 1.1e-11 45.0 44.5 4.1e-06 27.0 23.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family Nuc_sug_transp PF04142.15 ABA78203.1 - 0.25 10.5 7.9 0.038 13.2 1.6 2.2 1 1 1 2 2 2 0 Nucleotide-sugar transporter SLC3A2_N PF16028.5 ABA78203.1 - 5.7 6.6 9.2 0.97 9.0 0.7 3.3 3 0 0 3 3 3 0 Solute carrier family 3 member 2 N-terminus Phage_holin_3_3 PF16083.5 ABA78204.1 - 1.9e-12 47.1 1.3 1.9e-12 47.1 1.3 1.8 1 1 1 2 2 2 1 LydA holin phage, holin superfamily III Phage_holin_3_2 PF04550.12 ABA78204.1 - 0.049 14.2 1.0 0.062 13.8 1.0 1.2 1 0 0 1 1 1 0 Phage holin family 2 Bac_luciferase PF00296.20 ABA78205.1 - 0.00053 19.5 1.2 0.00053 19.5 1.2 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase ZapB PF06005.12 ABA78209.1 - 0.14 12.7 0.5 32 5.1 0.1 3.4 2 1 0 2 2 2 0 Cell division protein ZapB ArgoL1 PF08699.10 ABA78209.1 - 0.14 11.8 0.0 0.47 10.2 0.0 1.9 1 0 0 1 1 1 0 Argonaute linker 1 domain CENP-F_leu_zip PF10473.9 ABA78209.1 - 0.14 12.1 0.4 4.4 7.3 0.0 3.2 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ApoLp-III PF07464.11 ABA78209.1 - 0.15 12.2 3.4 3.7 7.6 0.1 4.1 4 0 0 4 4 4 0 Apolipophorin-III precursor (apoLp-III) Phage_TTP_12 PF16461.5 ABA78212.1 - 0.00036 20.2 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 Lambda phage tail tube protein, TTP DUF3168 PF11367.8 ABA78213.1 - 2.4e-19 69.7 0.1 2.7e-19 69.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) FliG_N PF14842.6 ABA78214.1 - 0.035 14.7 0.0 0.4 11.3 0.0 2.2 2 0 0 2 2 2 0 FliG N-terminal domain Phage_H_T_join PF05521.11 ABA78215.1 - 3e-20 72.5 0.6 3.4e-20 72.3 0.6 1.0 1 0 0 1 1 1 1 Phage head-tail joining protein Phage_connect_1 PF05135.13 ABA78216.1 - 0.00034 21.0 0.0 0.00039 20.9 0.0 1.2 1 0 0 1 1 1 1 Phage gp6-like head-tail connector protein Clathrin PF00637.20 ABA78216.1 - 0.2 11.5 0.0 0.26 11.2 0.0 1.1 1 0 0 1 1 1 0 Region in Clathrin and VPS RR_TM4-6 PF06459.12 ABA78217.1 - 0.018 14.9 13.2 0.021 14.7 13.2 1.0 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 DUF5427 PF10310.9 ABA78217.1 - 0.19 10.7 12.4 0.22 10.5 12.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5427) ATP-synt_B PF00430.18 ABA78217.1 - 0.89 9.7 36.7 1.3 9.1 36.7 1.2 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) EVC2_like PF12297.8 ABA78217.1 - 1.1 7.9 12.3 1.4 7.5 12.3 1.1 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein CDC45 PF02724.14 ABA78217.1 - 1.5 7.0 9.4 1.6 6.9 9.4 1.0 1 0 0 1 1 1 0 CDC45-like protein DUF913 PF06025.12 ABA78217.1 - 2.3 7.1 4.5 2.3 7.1 4.5 1.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) DUF4407 PF14362.6 ABA78217.1 - 2.3 7.5 18.8 2.7 7.3 18.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DDHD PF02862.17 ABA78217.1 - 2.7 8.1 4.6 3.5 7.7 4.6 1.3 1 0 0 1 1 1 0 DDHD domain SLC12 PF03522.15 ABA78217.1 - 3.8 6.4 5.8 4.2 6.3 5.8 1.0 1 0 0 1 1 1 0 Solute carrier family 12 SAPS PF04499.15 ABA78217.1 - 4.7 5.9 6.9 5 5.8 6.9 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Vfa1 PF08432.10 ABA78217.1 - 4.8 7.5 15.9 5.8 7.2 15.9 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 XRN_M PF17846.1 ABA78217.1 - 5 6.0 9.8 5.6 5.8 9.8 1.0 1 0 0 1 1 1 0 Xrn1 helical domain Borrelia_P83 PF05262.11 ABA78217.1 - 8.6 4.7 21.7 11 4.4 21.7 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein DUF4569 PF15133.6 ABA78217.1 - 8.7 6.0 9.2 11 5.6 9.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4569) Phage_capsid PF05065.13 ABA78218.1 - 2.1e-54 184.7 1.9 6.3e-54 183.2 0.1 2.0 2 0 0 2 2 2 1 Phage capsid family Serine_rich PF08824.10 ABA78218.1 - 0.0031 17.5 0.7 0.009 16.0 0.7 1.7 1 0 0 1 1 1 1 Serine rich protein interaction domain DUF4600 PF15372.6 ABA78218.1 - 0.036 14.5 0.2 0.067 13.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) GIT_CC PF16559.5 ABA78218.1 - 0.09 12.6 2.0 0.18 11.7 2.0 1.5 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor WXG100 PF06013.12 ABA78218.1 - 0.1 12.8 2.7 2.2 8.6 2.2 2.5 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Matrilin_ccoil PF10393.9 ABA78218.1 - 0.22 11.4 0.5 0.46 10.4 0.5 1.5 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin TSNAXIP1_N PF15739.5 ABA78218.1 - 0.24 11.8 1.9 0.49 10.8 1.9 1.4 1 0 0 1 1 1 0 Translin-associated factor X-interacting N-terminus DUF1690 PF07956.11 ABA78218.1 - 0.34 11.3 2.0 0.59 10.6 2.0 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) GreA_GreB_N PF03449.15 ABA78218.1 - 1.3 9.2 4.8 0.76 10.0 2.3 2.0 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal CLP_protease PF00574.23 ABA78219.1 - 8.9e-27 94.1 0.1 1.3e-26 93.6 0.1 1.2 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 ABA78219.1 - 1.5e-06 27.4 0.2 2.3e-06 26.8 0.2 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Waikav_capsid_1 PF12264.8 ABA78219.1 - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Waikavirus capsid protein 1 Phage_portal PF04860.12 ABA78220.1 - 3.2e-83 279.5 0.0 4.1e-83 279.2 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein Terminase_1 PF03354.15 ABA78221.1 - 5.7e-27 94.4 0.0 7e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 Phage Terminase Terminase_GpA PF05876.12 ABA78221.1 - 0.18 10.3 0.0 0.26 9.8 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) AAA_33 PF13671.6 ABA78223.1 - 2.4e-09 37.5 0.3 7.1e-09 36.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain HNH PF01844.23 ABA78223.1 - 1.7e-07 31.3 1.9 2.7e-07 30.6 1.9 1.3 1 0 0 1 1 1 1 HNH endonuclease AAA_17 PF13207.6 ABA78223.1 - 0.0098 16.3 0.8 0.14 12.6 0.8 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 ABA78223.1 - 0.015 15.8 0.0 0.17 12.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 ABA78223.1 - 0.033 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA78223.1 - 0.047 13.3 1.0 0.082 12.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 ABA78223.1 - 0.056 13.8 0.1 0.17 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 ABA78223.1 - 0.067 12.9 0.1 0.19 11.4 0.1 1.7 1 0 0 1 1 1 0 AAA domain Endonuclease_7 PF02945.15 ABA78223.1 - 0.087 12.8 2.4 0.093 12.7 0.7 1.9 2 0 0 2 2 2 0 Recombination endonuclease VII AAA_22 PF13401.6 ABA78223.1 - 0.15 12.3 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 ABA78223.1 - 0.2 12.1 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 ABA78223.1 - 0.22 12.1 0.0 0.73 10.3 0.0 1.8 2 0 0 2 2 2 0 ABC transporter DUF1409 PF07197.12 ABA78224.1 - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1409) DUF1376 PF07120.11 ABA78226.2 - 1.4e-06 28.5 0.1 2.4e-06 27.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1376) PGA_cap PF09587.10 ABA78226.2 - 0.17 11.3 0.1 0.27 10.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap DUF1937 PF09152.10 ABA78227.2 - 5.5e-47 159.3 0.1 7e-47 159.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1937) BrkDBD PF09607.10 ABA78228.1 - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 Brinker DNA-binding domain HTH_23 PF13384.6 ABA78228.1 - 0.0035 17.1 0.1 0.0061 16.3 0.1 1.5 1 1 0 1 1 1 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 ABA78228.1 - 0.011 15.6 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Phage_terminase PF10668.9 ABA78228.1 - 0.011 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_28 PF13518.6 ABA78228.1 - 0.022 14.9 0.0 0.039 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 ABA78229.1 - 5.6e-06 26.6 0.0 8.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 ABA78229.1 - 1.5e-05 25.0 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 ABA78229.1 - 0.0002 21.3 0.0 0.00028 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF5065 PF16723.5 ABA78231.1 - 0.17 12.0 0.2 0.23 11.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5065) DUF2312 PF10073.9 ABA78232.2 - 2.4e-29 100.8 2.5 3.2e-29 100.4 2.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) ParBc PF02195.18 ABA78233.1 - 1.7e-11 44.3 0.0 4.2e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_35 PF13693.6 ABA78233.1 - 0.14 12.2 0.8 7.4 6.7 0.5 2.8 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding EccE PF11203.8 ABA78233.1 - 0.4 11.0 4.9 2.9 8.3 4.9 2.6 1 1 0 1 1 1 0 Putative type VII ESX secretion system translocon, EccE HTH_23 PF13384.6 ABA78233.1 - 0.44 10.4 5.0 0.99 9.3 0.2 3.2 3 0 0 3 3 3 0 Homeodomain-like domain HTH_17 PF12728.7 ABA78234.1 - 7.9e-06 26.0 0.1 1.9e-05 24.7 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Phage_integrase PF00589.22 ABA78235.1 - 2.4e-11 43.7 0.0 4.5e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Acetyltransf_1 PF00583.25 ABA78236.1 - 3.1e-15 56.4 0.0 3.7e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 ABA78236.1 - 9.4e-11 41.8 0.0 1.2e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA78236.1 - 2.5e-09 37.4 0.0 3.3e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA78236.1 - 6.8e-05 22.9 0.0 0.0001 22.4 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 ABA78236.1 - 0.00053 19.9 0.0 0.00081 19.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 ABA78236.1 - 0.00084 19.5 0.0 0.001 19.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 ABA78236.1 - 0.014 15.6 0.2 0.018 15.2 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA78236.1 - 0.019 15.0 0.2 0.033 14.3 0.2 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 ABA78236.1 - 0.031 14.3 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase ETC_C1_NDUFA4 PF04800.12 ABA78237.1 - 9.5e-34 115.5 0.0 1.1e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 ETC complex I subunit conserved region UvrB_inter PF17757.1 ABA78238.1 - 7.5e-28 96.6 0.3 3.6e-26 91.2 0.0 2.5 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 ABA78238.1 - 1.3e-22 79.4 6.5 1.3e-22 79.3 1.6 2.9 3 0 0 3 3 3 1 Ultra-violet resistance protein B Helicase_C PF00271.31 ABA78238.1 - 3.2e-18 66.1 0.1 2e-17 63.6 0.0 2.2 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 ABA78238.1 - 2e-12 47.4 0.0 5.1e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UVR PF02151.19 ABA78238.1 - 4.1e-08 32.7 1.7 4.1e-08 32.7 1.7 2.2 2 0 0 2 2 2 1 UvrB/uvrC motif AAA_30 PF13604.6 ABA78238.1 - 7.2e-06 25.9 0.1 0.00011 22.0 0.0 2.7 3 0 0 3 3 3 1 AAA domain DEAD PF00270.29 ABA78238.1 - 9.7e-05 22.2 0.0 0.00042 20.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase UB2H PF14814.6 ABA78238.1 - 0.0011 18.9 0.0 0.0037 17.2 0.0 2.0 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain DUF87 PF01935.17 ABA78238.1 - 0.0086 16.2 0.0 0.032 14.3 0.0 2.0 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 ABA78238.1 - 0.03 14.6 0.0 0.13 12.5 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 ABA78238.1 - 0.046 14.0 0.8 0.53 10.6 0.3 2.4 2 1 0 2 2 2 0 AAA domain Kinesin PF00225.23 ABA78238.1 - 0.054 12.4 0.0 0.091 11.7 0.0 1.4 1 0 0 1 1 1 0 Kinesin motor domain AAA PF00004.29 ABA78238.1 - 0.056 13.9 0.0 0.22 12.0 0.0 2.2 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Microtub_bd PF16796.5 ABA78238.1 - 0.062 13.2 0.1 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 Microtubule binding TrwB_AAD_bind PF10412.9 ABA78238.1 - 0.072 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 ABA78238.1 - 0.11 12.9 2.2 0.51 10.7 0.0 2.9 2 1 0 3 3 3 0 AAA ATPase domain CytB6-F_Fe-S PF08802.10 ABA78239.1 - 0.69 10.0 3.7 0.45 10.6 1.1 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit ABM PF03992.16 ABA78241.1 - 1.2e-12 47.7 0.1 1.7e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Period_C PF12114.8 ABA78241.1 - 0.16 11.6 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Period protein 2/3C-terminal region Entericidin PF08085.11 ABA78243.1 - 2.1e-08 33.9 0.6 2.8e-08 33.5 0.6 1.2 1 0 0 1 1 1 1 Entericidin EcnA/B family FSAP_sig_propep PF03032.15 ABA78243.1 - 0.042 13.9 1.0 0.047 13.7 1.0 1.4 1 1 0 1 1 1 0 Frog skin active peptide family signal and propeptide LPAM_1 PF08139.12 ABA78243.1 - 1.7 9.3 7.6 0.49 11.0 4.6 1.7 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site GTP_EFTU PF00009.27 ABA78244.2 - 1.9e-51 174.4 0.0 3.4e-51 173.6 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 ABA78244.2 - 2.5e-50 169.1 1.3 4.7e-50 168.2 1.3 1.5 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 ABA78244.2 - 3e-20 72.1 0.0 7.3e-20 70.8 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 ABA78244.2 - 9e-07 29.2 3.7 2.6e-06 27.7 3.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 EFG_II PF14492.6 ABA78244.2 - 1.6e-06 28.1 0.0 7.6e-06 25.9 0.0 2.0 1 1 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 ABA78244.2 - 6.3e-06 26.2 0.0 1.2e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 ABA78244.2 - 0.0019 18.0 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 ABA78244.2 - 0.0087 15.7 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 ABA78244.2 - 0.042 13.3 0.0 0.1 12.0 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 ABA78244.2 - 0.088 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PYC_OADA PF02436.18 ABA78245.1 - 4.6e-71 238.7 0.0 8.9e-71 237.7 0.0 1.5 1 0 0 1 1 1 1 Conserved carboxylase domain CPSase_L_D2 PF02786.17 ABA78245.1 - 1.1e-70 237.5 0.5 2e-70 236.6 0.5 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 ABA78245.1 - 1.5e-40 138.1 0.1 1.3e-39 135.1 0.1 2.4 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 ABA78245.1 - 4.7e-34 116.7 0.0 1.3e-33 115.3 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain HMGL-like PF00682.19 ABA78245.1 - 3e-29 102.4 0.0 7.1e-29 101.2 0.0 1.6 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 ABA78245.1 - 9.3e-13 47.8 0.7 2.9e-12 46.3 0.7 1.9 1 0 0 1 1 1 1 Biotin-requiring enzyme ATP-grasp PF02222.22 ABA78245.1 - 9.9e-09 35.0 0.1 2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.6 ABA78245.1 - 3.3e-07 30.0 0.3 1.2e-05 25.0 0.0 2.6 1 1 1 2 2 2 1 Biotin-lipoyl like Dala_Dala_lig_C PF07478.13 ABA78245.1 - 5.3e-06 26.1 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 ABA78245.1 - 0.00042 20.4 0.0 0.00085 19.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 ABA78245.1 - 0.017 14.9 0.1 0.085 12.6 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon HlyD_D23 PF16576.5 ABA78245.1 - 0.045 13.0 0.0 0.11 11.7 0.0 1.7 1 0 0 1 1 1 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion UvrD-helicase PF00580.21 ABA78246.1 - 1.4e-74 251.5 0.0 3.6e-74 250.1 0.0 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 ABA78246.1 - 1.1e-60 205.9 0.0 2.8e-30 105.9 0.0 2.1 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 ABA78246.1 - 2.2e-29 102.7 0.0 5e-29 101.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 ABA78246.1 - 9.7e-10 38.1 0.0 6.8e-09 35.4 0.0 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 ABA78246.1 - 5.6e-08 32.7 0.2 0.0002 21.1 0.1 2.5 2 0 0 2 2 2 2 AAA domain DUF3553 PF12073.8 ABA78246.1 - 0.0088 15.7 0.1 0.023 14.4 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3553) Viral_helicase1 PF01443.18 ABA78246.1 - 0.011 15.5 0.0 3.7 7.2 0.0 3.3 3 1 0 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 ABA78246.1 - 0.018 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 ABA78246.1 - 0.23 11.2 0.0 0.62 9.8 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase BenE PF03594.13 ABA78247.1 - 1.4e-110 369.6 51.3 1.6e-110 369.5 51.3 1.0 1 0 0 1 1 1 1 Benzoate membrane transport protein DUF1127 PF06568.11 ABA78248.1 - 5.6e-13 48.4 0.5 7.3e-13 48.0 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1127) ParA PF10609.9 ABA78249.1 - 3.7e-98 327.9 0.0 4.5e-98 327.6 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 ABA78249.1 - 1.9e-16 60.3 0.0 3.5e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 ABA78249.1 - 4.7e-15 55.5 1.4 1e-14 54.5 1.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 ABA78249.1 - 1.9e-10 40.9 0.3 1.1e-09 38.4 0.3 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 ABA78249.1 - 3e-09 36.6 0.0 3.9e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 ABA78249.1 - 9.1e-07 28.3 1.0 2.7e-06 26.8 0.5 1.9 2 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 ABA78249.1 - 1.7e-05 24.4 0.0 4.2e-05 23.1 0.1 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 ABA78249.1 - 0.0007 19.0 0.0 0.0021 17.4 0.0 1.7 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 ABA78249.1 - 0.00091 19.1 0.2 0.0019 18.1 0.0 1.5 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 ABA78249.1 - 0.0024 17.4 0.5 0.14 11.6 0.2 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MeaB PF03308.16 ABA78249.1 - 0.0032 16.5 1.6 0.0033 16.4 0.3 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 ABA78249.1 - 0.0076 15.8 0.2 0.018 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 ABA78249.1 - 0.024 14.3 0.1 0.039 13.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 ABA78249.1 - 0.031 14.2 0.1 0.065 13.1 0.1 1.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_26 PF13500.6 ABA78249.1 - 0.035 13.9 0.2 5.4 6.8 0.3 2.6 3 0 0 3 3 3 0 AAA domain DUF1610 PF07754.11 ABA78249.1 - 0.084 12.9 0.3 0.19 11.7 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) AAA_33 PF13671.6 ABA78249.1 - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhnA_Zn_Ribbon PF08274.12 ABA78249.1 - 0.13 12.3 0.1 0.23 11.4 0.1 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon AAA_30 PF13604.6 ABA78249.1 - 0.15 11.8 2.5 0.6 9.8 0.2 2.3 2 0 0 2 2 2 0 AAA domain MraZ PF02381.18 ABA78250.1 - 6.4e-15 54.9 0.0 4.3e-07 29.8 0.0 2.4 2 1 0 2 2 2 2 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 ABA78250.1 - 0.007 16.3 0.3 1.8 8.6 0.0 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin Methyltransf_5 PF01795.19 ABA78251.1 - 2e-89 300.2 0.0 2.3e-89 300.0 0.0 1.0 1 0 0 1 1 1 1 MraW methylase family Methyltransf_25 PF13649.6 ABA78251.1 - 2.4e-05 25.0 0.0 0.0025 18.5 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA78251.1 - 0.0007 20.2 0.0 0.2 12.4 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.6 ABA78251.1 - 0.049 13.4 0.0 4.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain DivIC PF04977.15 ABA78252.1 - 0.0031 17.2 0.2 0.004 16.9 0.2 1.1 1 0 0 1 1 1 1 Septum formation initiator CcmD PF04995.14 ABA78252.1 - 0.097 12.8 0.9 0.15 12.2 0.1 1.7 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Transpeptidase PF00905.22 ABA78253.1 - 4.9e-56 190.2 0.0 6e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 ABA78253.1 - 1.4e-15 58.1 0.0 2.5e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain Beta-lactamase2 PF13354.6 ABA78253.1 - 0.074 12.6 0.0 0.46 10.0 0.0 2.1 1 1 0 1 1 1 0 Beta-lactamase enzyme family Mur_ligase_M PF08245.12 ABA78254.1 - 1.2e-45 155.9 0.0 1.6e-45 155.5 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 ABA78254.1 - 1.3e-21 76.7 0.2 3.3e-21 75.3 0.2 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 ABA78254.1 - 7.5e-11 42.2 0.5 3.4e-10 40.1 0.2 2.4 2 0 0 2 2 2 1 Mur ligase family, catalytic domain ADH_zinc_N PF00107.26 ABA78254.1 - 0.02 14.9 1.7 0.41 10.6 0.0 2.7 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Mur_ligase_M PF08245.12 ABA78255.1 - 6.4e-40 137.2 0.0 8.3e-40 136.8 0.0 1.1 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 ABA78255.1 - 1.1e-09 38.4 0.2 7.8e-09 35.7 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 ABA78255.1 - 9.4e-07 29.1 0.1 3.3e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Mur ligase family, catalytic domain Glycos_transf_4 PF00953.21 ABA78256.1 - 1.1e-36 126.2 15.5 1.1e-36 126.2 15.5 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 ABA78256.1 - 3.5e-06 26.2 0.8 1.1e-05 24.6 0.8 2.0 1 0 0 1 1 1 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BON PF04972.17 ABA78257.1 - 4.4e-13 49.3 2.0 7e-13 48.7 2.0 1.3 1 0 0 1 1 1 1 BON domain Mur_ligase_M PF08245.12 ABA78258.1 - 1.2e-31 110.2 0.0 1.7e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 ABA78258.1 - 3.3e-07 30.5 0.4 1e-06 28.9 0.0 2.1 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain 2-Hacid_dh_C PF02826.19 ABA78258.1 - 8.8e-05 21.9 0.0 0.0002 20.8 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 ABA78258.1 - 0.014 15.0 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 ABA78258.1 - 0.065 13.5 0.0 0.56 10.5 0.0 2.4 3 0 0 3 3 3 0 TrkA-N domain GFA PF04828.14 ABA78259.1 - 2.5e-20 72.6 0.2 3.4e-20 72.2 0.2 1.2 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme AGH PF17558.2 ABA78259.1 - 0.044 14.0 0.1 0.058 13.6 0.1 1.2 1 0 0 1 1 1 0 Androgenic gland hormone AHSA1 PF08327.11 ABA78260.2 - 1.6e-19 70.3 0.1 2e-19 70.1 0.1 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 ABA78260.2 - 9.6e-10 38.9 0.9 1.1e-09 38.7 0.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport FTSW_RODA_SPOVE PF01098.19 ABA78261.1 - 5.1e-73 246.1 18.5 5.8e-73 245.9 18.5 1.0 1 0 0 1 1 1 1 Cell cycle protein YtpI PF14007.6 ABA78261.1 - 0.057 13.6 4.2 3.4 7.8 0.0 3.1 3 0 0 3 3 3 0 YtpI-like protein Amidohydro_2 PF04909.14 ABA78261.1 - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase Flp_Fap PF04964.14 ABA78261.1 - 6.3 6.7 14.7 2.4 8.1 2.8 4.2 4 0 0 4 4 4 0 Flp/Fap pilin component Glyco_tran_28_C PF04101.16 ABA78262.1 - 6.8e-33 114.0 0.0 9.3e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 ABA78262.1 - 1.9e-26 92.8 0.0 3.2e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_4 PF13579.6 ABA78262.1 - 3.1e-05 24.4 4.0 3.1e-05 24.4 4.0 2.3 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain DUF3089 PF11288.8 ABA78262.1 - 0.023 14.2 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) Mur_ligase PF01225.25 ABA78263.1 - 1e-27 96.3 0.1 3.3e-27 94.7 0.1 1.9 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Mur_ligase_M PF08245.12 ABA78263.1 - 6.1e-27 94.9 0.0 9e-27 94.3 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 ABA78263.1 - 6.1e-20 71.3 0.2 3.2e-19 69.0 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain DUF2484 PF10658.9 ABA78264.1 - 2.1e-26 92.0 14.8 2.4e-26 91.9 14.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2484) MASE1 PF05231.14 ABA78264.1 - 0.15 11.2 9.5 0.22 10.6 9.5 1.3 1 1 0 1 1 1 0 MASE1 MurB_C PF02873.16 ABA78265.1 - 2.8e-28 98.4 0.0 4.1e-28 97.9 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 ABA78265.1 - 3.2e-16 59.3 0.1 6.5e-16 58.3 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Dala_Dala_lig_C PF07478.13 ABA78266.1 - 1.3e-33 116.3 0.0 1.5e-33 116.0 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 ABA78266.1 - 9.5e-19 67.8 0.0 4.3e-17 62.5 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase N-terminus ATP-grasp_3 PF02655.14 ABA78266.1 - 0.0022 18.1 0.0 0.0029 17.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 ABA78266.1 - 0.0048 16.5 0.0 0.18 11.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 ABA78266.1 - 0.054 13.1 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain FtsQ PF03799.15 ABA78267.1 - 5.7e-11 43.3 2.6 8.9e-11 42.7 1.5 1.8 2 0 0 2 2 2 1 Cell division protein FtsQ POTRA_1 PF08478.10 ABA78267.1 - 1.4e-05 25.2 0.0 2.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 POTRA domain, FtsQ-type NDUF_B4 PF07225.12 ABA78267.1 - 0.061 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) Bac_export_1 PF01311.20 ABA78267.1 - 0.073 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial export proteins, family 1 FtsA PF14450.6 ABA78268.1 - 2e-30 105.2 0.1 2e-19 69.9 0.0 2.2 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 ABA78268.1 - 6.2e-19 68.2 0.0 5.5e-18 65.1 0.0 2.4 2 0 0 2 2 2 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 ABA78268.1 - 3.1e-12 46.0 1.9 5.2e-12 45.2 0.7 1.8 2 0 0 2 2 2 1 MreB/Mbl protein PilM_2 PF11104.8 ABA78268.1 - 1e-06 28.1 0.0 0.0018 17.4 0.0 3.2 3 0 0 3 3 3 2 Type IV pilus assembly protein PilM; DDR PF08841.10 ABA78268.1 - 0.023 13.7 0.4 0.051 12.5 0.4 1.6 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Ppx-GppA PF02541.16 ABA78268.1 - 0.11 11.9 0.2 0.22 10.9 0.2 1.5 1 0 0 1 1 1 0 Ppx/GppA phosphatase family DUF3215 PF11503.8 ABA78268.1 - 0.16 11.8 0.0 0.47 10.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) HSP70 PF00012.20 ABA78268.1 - 0.18 9.9 0.1 0.44 8.7 0.0 1.7 2 0 0 2 2 2 0 Hsp70 protein Tubulin PF00091.25 ABA78269.1 - 6.3e-39 134.2 1.8 9.7e-39 133.6 1.8 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 ABA78269.1 - 2.5e-38 130.3 3.6 6.3e-38 129.0 3.6 1.7 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 ABA78269.1 - 0.62 9.2 5.4 3.8 6.6 0.2 2.3 1 1 1 2 2 2 0 Tubulin like LpxC PF03331.13 ABA78270.1 - 3.1e-99 331.9 0.0 3.7e-99 331.6 0.0 1.1 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase YfiO PF13525.6 ABA78271.1 - 2.2e-48 164.7 12.6 2.9e-48 164.3 12.6 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein TPR_6 PF13174.6 ABA78271.1 - 2.2e-16 59.3 15.3 1.2e-05 25.7 0.3 5.5 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_18 PF13512.6 ABA78271.1 - 4.9e-12 46.2 10.6 7.5e-11 42.3 7.1 2.8 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 ABA78271.1 - 2.7e-10 40.7 16.5 0.00025 21.6 7.7 3.5 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 ABA78271.1 - 6.9e-08 32.9 7.1 0.0057 17.1 0.0 3.9 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 ABA78271.1 - 1e-07 32.2 11.8 0.16 12.9 0.1 5.1 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 ABA78271.1 - 2.6e-05 24.0 20.3 0.0018 18.2 0.8 5.7 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_12 PF13424.6 ABA78271.1 - 0.0012 19.0 11.8 0.13 12.5 0.9 4.1 2 2 1 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 ABA78271.1 - 0.037 14.2 11.4 1.8 9.0 0.6 4.9 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_21 PF09976.9 ABA78271.1 - 0.062 13.0 6.1 1.3 8.7 1.9 2.8 1 1 1 2 2 2 0 Tetratricopeptide repeat-like domain TPR_1 PF00515.28 ABA78271.1 - 0.14 12.0 10.1 2.1 8.3 0.3 4.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_9 PF13371.6 ABA78271.1 - 0.15 12.3 4.2 9.9 6.4 1.3 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat DDE_3 PF13358.6 ABA78271.1 - 0.15 11.8 0.0 1.3 8.8 0.0 2.0 2 0 0 2 2 2 0 DDE superfamily endonuclease ANAPC3 PF12895.7 ABA78271.1 - 0.17 12.1 12.8 4.1 7.7 6.4 3.2 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 RPN7 PF10602.9 ABA78271.1 - 0.18 11.5 1.4 0.3 10.8 0.2 2.0 2 1 0 2 2 2 0 26S proteasome subunit RPN7 Fis1_TPR_C PF14853.6 ABA78271.1 - 0.38 10.9 0.2 0.38 10.9 0.2 3.0 4 1 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_11 PF13414.6 ABA78271.1 - 1.1 9.0 13.5 4 7.2 0.0 4.9 5 0 0 5 5 5 0 TPR repeat SMC_N PF02463.19 ABA78272.1 - 7.8e-15 54.9 0.0 1.6e-14 53.9 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA78272.1 - 4.2e-08 33.4 0.0 0.0026 17.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 ABA78272.1 - 4.6e-08 33.8 0.0 1.2e-07 32.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 ABA78272.1 - 0.00084 19.0 0.0 0.0021 17.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.8 ABA78272.1 - 0.0068 15.7 0.3 0.0094 15.2 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AroM PF07302.11 ABA78272.1 - 0.072 12.5 0.1 2.7 7.3 0.0 2.4 2 0 0 2 2 2 0 AroM protein ABC_tran PF00005.27 ABA78272.1 - 0.15 12.6 0.1 0.47 11.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter RsgA_GTPase PF03193.16 ABA78272.1 - 0.19 11.6 0.0 0.43 10.5 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 ABA78272.1 - 0.22 11.8 1.0 1.4 9.2 0.1 2.7 3 1 0 3 3 3 0 AAA domain HWE_HK PF07536.14 ABA78272.1 - 1.1 10.0 5.3 7.5 7.3 0.2 4.0 4 1 0 4 4 4 0 HWE histidine kinase DUF4440 PF14534.6 ABA78273.1 - 2.8e-09 37.3 0.1 3.5e-09 37.0 0.1 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 ABA78273.1 - 0.00021 21.9 0.2 0.00028 21.5 0.2 1.5 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 ABA78273.1 - 0.0028 17.9 0.0 0.0032 17.7 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 ABA78273.1 - 0.0069 16.9 0.0 0.0087 16.6 0.0 1.3 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain DUF5393 PF17371.2 ABA78273.1 - 0.039 12.1 0.0 0.048 11.8 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5393) FAD-oxidase_C PF02913.19 ABA78274.1 - 4.3e-63 213.3 0.6 6e-63 212.8 0.6 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 ABA78274.1 - 4.3e-38 130.2 0.2 1.6e-37 128.4 0.3 1.9 2 0 0 2 2 2 1 FAD binding domain DUF1638 PF07796.11 ABA78275.1 - 8.1e-36 123.5 0.0 9.4e-36 123.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) B12-binding PF02310.19 ABA78276.1 - 9.2e-25 87.0 0.4 1.3e-24 86.5 0.4 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 ABA78276.1 - 3e-16 59.6 0.3 1.2e-15 57.6 0.1 2.0 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 ABA78277.1 - 5.6e-17 62.6 0.0 1.5e-16 61.2 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 ABA78277.1 - 0.037 13.7 0.7 1.5 8.5 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF4917 PF16263.5 ABA78277.1 - 0.12 11.7 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4917) S-methyl_trans PF02574.16 ABA78278.1 - 1.8e-50 172.2 0.0 2.1e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Homocysteine S-methyltransferase DUF1476 PF07345.11 ABA78279.1 - 2.2e-38 130.7 1.5 2.5e-38 130.6 1.5 1.0 1 0 0 1 1 1 1 ATPase inhibitor subunit zeta SAICAR_synt PF01259.18 ABA78280.1 - 2.9e-46 158.1 0.0 3.6e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 ABA78281.1 - 3.1e-35 120.2 0.1 3.3e-35 120.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 ABA78282.1 - 1e-40 139.5 0.0 2e-40 138.6 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 ABA78282.1 - 1.1e-07 31.6 0.0 2.2e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 ABA78282.1 - 0.00011 22.1 0.1 0.00018 21.4 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 ABA78282.1 - 0.004 16.9 0.0 0.0048 16.7 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I CusF_Ec PF11604.8 ABA78282.1 - 0.027 14.4 0.0 2.7 8.0 0.0 2.3 1 1 1 2 2 2 0 Copper binding periplasmic protein CusF HATPase_c PF02518.26 ABA78283.1 - 8.2e-18 65.0 0.0 1.5e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 ABA78283.1 - 3.1e-11 43.5 0.0 5.9e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Cache domain HisKA PF00512.25 ABA78283.1 - 4.1e-09 36.3 0.2 1.2e-08 34.9 0.2 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain dCache_3 PF14827.6 ABA78283.1 - 0.00038 20.2 0.2 0.0026 17.4 0.1 2.4 2 1 0 2 2 2 1 Double sensory domain of two-component sensor kinase HATPase_c_3 PF13589.6 ABA78283.1 - 0.0032 17.3 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 ABA78283.1 - 0.0041 17.0 0.0 0.0071 16.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain Diacid_rec PF05651.13 ABA78283.1 - 0.016 14.9 0.0 0.79 9.4 0.0 3.0 3 0 0 3 3 3 0 Putative sugar diacid recognition HATPase_c_2 PF13581.6 ABA78283.1 - 0.03 14.3 0.0 0.082 12.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Sigma54_activat PF00158.26 ABA78284.1 - 1.9e-29 102.5 0.0 6.6e-29 100.8 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 ABA78284.1 - 3.1e-29 101.4 0.0 1.2e-28 99.5 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 ABA78284.1 - 3.6e-20 72.5 0.0 6.9e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA78284.1 - 7.3e-08 32.1 0.5 2.9e-07 30.1 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 ABA78284.1 - 2.5e-05 24.3 0.0 5.2e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA78284.1 - 2.8e-05 24.6 0.0 6.3e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_50 PF18024.1 ABA78284.1 - 8e-05 22.2 0.0 0.00018 21.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain FleQ PF06490.11 ABA78284.1 - 0.00063 20.1 0.0 0.0017 18.7 0.0 1.8 2 0 0 2 2 1 1 Flagellar regulatory protein FleQ AAA_16 PF13191.6 ABA78284.1 - 0.003 17.9 0.3 0.013 15.9 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 ABA78284.1 - 0.011 15.1 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.6 ABA78284.1 - 0.017 15.4 0.0 0.061 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 ABA78284.1 - 0.024 13.7 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 ABA78284.1 - 0.031 14.0 0.0 0.084 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 ABA78284.1 - 0.032 14.2 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PRTase_2 PF15609.6 ABA78284.1 - 0.066 12.7 0.0 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase AAA_7 PF12775.7 ABA78284.1 - 0.074 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 ABA78284.1 - 0.092 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 ABA78284.1 - 0.099 11.5 0.1 0.17 10.8 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 ABA78284.1 - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DEAD PF00270.29 ABA78284.1 - 0.15 11.8 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase RNase_E_G PF10150.9 ABA78285.1 - 2.8e-93 312.3 0.2 4.5e-93 311.6 0.2 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 ABA78285.1 - 2e-06 28.0 0.1 0.0012 19.2 0.0 2.7 2 0 0 2 2 2 2 S1 RNA binding domain FXR_C1 PF16096.5 ABA78285.1 - 0.023 14.9 1.7 0.023 14.9 1.7 5.4 5 1 1 6 6 6 0 Fragile X-related 1 protein C-terminal region 2 DnaJ_CXXCXGXG PF00684.19 ABA78285.1 - 0.051 13.9 0.1 0.1 12.9 0.1 1.4 1 0 0 1 1 1 0 DnaJ central domain TusA PF01206.17 ABA78286.1 - 3.2e-19 68.5 0.0 3.4e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DsbD PF02683.15 ABA78287.1 - 7.9e-58 195.8 12.5 9.3e-58 195.6 12.5 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Lipase_3 PF01764.25 ABA78288.1 - 0.0048 16.8 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) RHH_4 PF13467.6 ABA78289.1 - 3.5e-26 90.9 0.0 3.8e-26 90.7 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF4169 PF13770.6 ABA78290.1 - 6.1e-17 61.6 18.6 6.9e-17 61.5 18.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4169) Phage_GPD PF05954.11 ABA78290.1 - 0.13 11.6 4.9 0.14 11.4 4.9 1.0 1 0 0 1 1 1 0 Phage late control gene D protein (GPD) Lyase_1 PF00206.20 ABA78291.1 - 1.9e-114 382.3 0.0 2.6e-114 381.8 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 ABA78291.1 - 1e-22 80.3 0.1 2.4e-22 79.1 0.1 1.7 1 0 0 1 1 1 1 Fumarase C C-terminus TetR_C_25 PF17933.1 ABA78291.1 - 0.065 13.6 0.1 0.19 12.1 0.1 1.8 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain SspB PF04386.13 ABA78292.1 - 1.3e-46 158.4 0.1 1.5e-46 158.2 0.1 1.0 1 0 0 1 1 1 1 Stringent starvation protein B DUF1194 PF06707.11 ABA78293.1 - 9.4e-61 204.6 0.1 1.1e-60 204.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) VWA_2 PF13519.6 ABA78293.1 - 0.015 15.9 0.0 0.027 15.1 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain SBP_bac_6 PF13343.6 ABA78294.1 - 9.9e-25 87.4 0.6 1.3e-24 87.0 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA78294.1 - 9.6e-22 78.1 7.2 1.3e-21 77.7 7.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA78294.1 - 2.9e-06 27.5 4.4 4.6e-06 26.8 4.4 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA78294.1 - 0.0041 16.9 0.3 0.0064 16.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PLAT PF01477.23 ABA78294.1 - 0.12 12.9 0.0 0.23 12.1 0.0 1.4 1 0 0 1 1 1 0 PLAT/LH2 domain Aminotran_5 PF00266.19 ABA78295.1 - 8.6e-45 153.3 0.0 8e-44 150.1 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 ABA78295.1 - 0.00017 20.9 0.0 0.001 18.3 0.0 2.1 2 1 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 ABA78295.1 - 0.011 14.3 0.0 0.014 14.0 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme FAD_binding_7 PF03441.14 ABA78296.2 - 1.7e-63 213.8 0.3 2.5e-63 213.2 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 ABA78296.2 - 4.5e-46 156.8 0.0 8.2e-46 156.0 0.0 1.4 1 0 0 1 1 1 1 DNA photolyase LEAP-2 PF07359.11 ABA78296.2 - 0.14 12.0 0.1 0.29 11.0 0.1 1.4 1 0 0 1 1 1 0 Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) CMAS PF02353.20 ABA78297.1 - 2.3e-87 292.8 0.0 3.3e-87 292.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 ABA78297.1 - 4.5e-12 46.1 0.0 7.2e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA78297.1 - 5.7e-12 46.2 0.0 1.3e-11 45.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA78297.1 - 1e-10 42.1 0.0 2.2e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA78297.1 - 3.6e-09 37.3 0.0 8e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA78297.1 - 0.012 15.5 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 ABA78297.1 - 0.05 13.2 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsJ PF01728.19 ABA78297.1 - 0.051 13.7 0.0 0.097 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Amidohydro_3 PF07969.11 ABA78297.1 - 0.066 12.7 0.1 0.09 12.2 0.1 1.1 1 0 0 1 1 1 0 Amidohydrolase family Methyltransf_24 PF13578.6 ABA78297.1 - 0.11 13.5 0.2 1.9 9.6 0.0 2.9 2 1 1 3 3 3 0 Methyltransferase domain PCMT PF01135.19 ABA78297.1 - 0.15 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NUDIX PF00293.28 ABA78299.2 - 1.4e-14 54.2 0.0 2.6e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain PALP PF00291.25 ABA78300.1 - 1.9e-63 214.7 0.5 2.1e-63 214.5 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MS_channel PF00924.18 ABA78301.1 - 5.7e-51 173.0 1.1 5.7e-51 173.0 1.1 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF3772 PF12607.8 ABA78301.1 - 9.5e-18 63.7 1.3 9.5e-18 63.7 1.3 3.5 2 1 1 3 3 3 1 Protein of unknown function (DUF3772) MscS_TM PF12794.7 ABA78301.1 - 0.0002 20.3 9.2 0.00047 19.1 9.2 1.7 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 DUF373 PF04123.13 ABA78301.1 - 8 5.8 18.5 0.094 12.1 0.3 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF373) Bac_export_2 PF01312.19 ABA78301.1 - 9.8 5.3 6.8 0.71 9.0 0.3 2.3 2 1 0 2 2 2 0 FlhB HrpN YscU SpaS Family tRNA_SAD PF07973.14 ABA78302.1 - 7.4e-13 48.4 0.5 1.1e-12 47.8 0.5 1.3 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 ABA78302.1 - 3.3e-08 32.5 0.0 4.2e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DUF2635 PF10948.8 ABA78302.1 - 0.012 15.3 0.3 0.18 11.6 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2635) Glycos_transf_2 PF00535.26 ABA78303.1 - 6.1e-19 68.5 0.0 8.3e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA78303.1 - 5.2e-10 39.6 0.1 8.1e-10 39.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 ABA78303.1 - 6.3e-05 23.4 0.0 0.00016 22.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 SNARE_assoc PF09335.11 ABA78304.1 - 4.2e-10 40.2 4.6 7.5e-10 39.3 4.6 1.5 1 1 0 1 1 1 1 SNARE associated Golgi protein Glyco_transf_21 PF13506.6 ABA78305.2 - 2.7e-52 176.7 0.0 3.8e-52 176.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 ABA78305.2 - 1.9e-12 47.6 0.0 2.5e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 ABA78305.2 - 1.5e-09 38.1 0.5 2.2e-09 37.5 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 ABA78305.2 - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Metallophos_2 PF12850.7 ABA78306.1 - 7.7e-11 42.5 1.1 1.8e-09 38.0 1.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 ABA78306.1 - 1.8e-07 31.9 0.1 3.3e-07 31.0 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase BsuBI_PstI_RE PF06616.11 ABA78306.1 - 0.24 10.7 0.0 0.44 9.8 0.0 1.3 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease domain Histidinol_dh PF00815.20 ABA78308.1 - 5.8e-127 424.1 0.0 7.2e-127 423.8 0.0 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase BPD_transp_1 PF00528.22 ABA78309.1 - 1.7e-16 60.5 16.4 1.7e-16 60.5 16.4 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA78310.1 - 3.9e-12 46.3 20.0 3.9e-12 46.3 20.0 2.3 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 ABA78311.1 - 2.9e-45 155.3 0.1 3.5e-45 155.0 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA78311.1 - 6.6e-17 61.7 0.1 1.4e-16 60.7 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 ABA78311.1 - 0.0058 16.4 8.2 0.012 15.4 8.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 ABA78312.1 - 2.8e-34 118.6 0.0 4.4e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA78312.1 - 3.2e-11 43.2 0.3 1.1e-10 41.5 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 ABA78312.1 - 1.9e-06 27.9 1.2 0.0013 18.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA78312.1 - 0.00031 20.5 0.6 0.011 15.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 ABA78312.1 - 0.0029 17.9 0.1 0.0059 16.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 ABA78312.1 - 0.0088 15.5 0.0 2.9 7.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA78312.1 - 0.013 15.8 0.3 0.024 15.0 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 ABA78312.1 - 0.015 15.0 0.1 0.03 14.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RecA PF00154.21 ABA78312.1 - 0.02 14.4 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein RsgA_GTPase PF03193.16 ABA78312.1 - 0.022 14.7 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 ABA78312.1 - 0.036 14.4 0.0 0.053 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA78312.1 - 0.037 14.5 0.0 0.076 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA78312.1 - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 ABA78312.1 - 0.097 11.4 0.8 5.3 5.7 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 ABA78312.1 - 0.17 12.4 0.0 0.4 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 ABA78312.1 - 0.18 11.4 0.0 0.38 10.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 ABA78312.1 - 0.18 12.2 0.3 0.43 11.0 0.3 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 ABA78312.1 - 0.19 12.0 0.5 0.76 10.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA78312.1 - 0.26 11.2 0.0 0.39 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain adh_short_C2 PF13561.6 ABA78313.1 - 4.1e-61 206.5 0.7 4.7e-61 206.3 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78313.1 - 4.8e-54 182.8 0.0 5.8e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78313.1 - 2.2e-08 34.2 0.2 3e-08 33.8 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA78313.1 - 0.057 12.9 0.1 0.082 12.4 0.1 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family PAP2 PF01569.21 ABA78314.1 - 3.8e-13 49.4 9.0 3.8e-13 49.4 9.0 2.3 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 ABA78314.1 - 4.2e-09 36.4 14.8 8e-09 35.4 14.8 1.4 1 0 0 1 1 1 1 PAP2 superfamily DUF1772 PF08592.11 ABA78314.1 - 2.8 8.3 15.6 0.074 13.4 1.7 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1772) PAP2_C PF14360.6 ABA78314.1 - 3 8.5 8.8 0.66 10.6 3.5 2.3 2 0 0 2 2 2 0 PAP2 superfamily C-terminal SLT_2 PF13406.6 ABA78315.1 - 1.3e-64 218.3 0.6 1.3e-60 205.1 0.0 2.0 1 1 1 2 2 2 2 Transglycosylase SLT domain Glucosaminidase PF01832.20 ABA78315.1 - 0.02 15.4 0.0 0.043 14.3 0.0 1.6 1 0 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GntP_permease PF02447.16 ABA78315.1 - 0.12 11.0 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 GntP family permease AsnC_trans_reg PF01037.21 ABA78316.1 - 9.6e-21 73.5 0.5 1.6e-20 72.9 0.2 1.5 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 ABA78316.1 - 1.1e-15 56.9 0.0 1.6e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 ABA78316.1 - 2.6e-14 52.8 1.1 4.7e-14 51.9 1.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA78316.1 - 4.9e-07 29.5 0.2 8.4e-07 28.8 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 ABA78316.1 - 1.1e-06 28.6 0.1 2.1e-06 27.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 ABA78316.1 - 6.1e-05 22.7 0.4 0.00011 21.9 0.4 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_CodY PF08222.11 ABA78316.1 - 0.00019 20.9 0.1 0.00038 19.9 0.1 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain MarR PF01047.22 ABA78316.1 - 0.00038 20.3 0.0 0.00064 19.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 ABA78316.1 - 0.00095 19.1 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 ABA78316.1 - 0.003 18.0 0.1 0.0072 16.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 ABA78316.1 - 0.0077 16.2 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_47 PF16221.5 ABA78316.1 - 0.011 15.2 0.0 0.033 13.8 0.0 1.7 2 0 0 2 2 2 0 winged helix-turn-helix TrmB PF01978.19 ABA78316.1 - 0.023 14.6 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_26 PF13443.6 ABA78316.1 - 0.032 14.7 0.1 0.053 14.0 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_34 PF13601.6 ABA78316.1 - 0.034 14.3 0.0 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_28 PF13518.6 ABA78316.1 - 0.076 13.2 0.2 0.13 12.4 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain gag-asp_proteas PF13975.6 ABA78316.1 - 0.12 13.0 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Aldedh PF00171.22 ABA78317.1 - 2.7e-102 342.7 0.0 5.2e-102 341.7 0.0 1.4 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pro_dh PF01619.18 ABA78317.1 - 3.8e-91 305.7 0.1 5.2e-91 305.2 0.1 1.2 1 0 0 1 1 1 1 Proline dehydrogenase Pro_dh-DNA_bdg PF14850.6 ABA78317.1 - 2.5e-45 153.6 0.0 6.6e-45 152.2 0.0 1.8 1 0 0 1 1 1 1 DNA-binding domain of Proline dehydrogenase PRODH PF18327.1 ABA78317.1 - 1.8e-06 28.0 1.4 4.4e-05 23.6 1.4 3.7 1 0 0 1 1 1 1 Proline utilization A proline dehydrogenase N-terminal domain Rhomboid PF01694.22 ABA78318.1 - 2.5e-34 118.4 17.1 4.4e-34 117.7 17.1 1.3 1 0 0 1 1 1 1 Rhomboid family GFA PF04828.14 ABA78319.1 - 1.8e-09 37.8 0.2 1.8e-09 37.8 0.2 1.5 2 0 0 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Inositol_P PF00459.25 ABA78320.1 - 6.8e-59 199.6 0.0 8.8e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family PHO4 PF01384.20 ABA78321.1 - 4.6e-105 351.4 29.6 4.6e-105 351.4 29.6 1.5 2 0 0 2 2 2 1 Phosphate transporter family Vma12 PF11712.8 ABA78321.1 - 0.15 12.1 0.1 0.9 9.6 0.1 2.3 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase LysR_substrate PF03466.20 ABA78322.1 - 5.2e-33 114.2 2.9 7.5e-33 113.7 2.9 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA78322.1 - 1.9e-16 59.7 0.9 1.9e-16 59.7 0.9 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF5440 PF17509.2 ABA78322.1 - 0.035 13.7 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5440) MTHFR PF02219.17 ABA78323.1 - 3.3e-85 285.9 0.0 3.7e-85 285.7 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase BioY PF02632.14 ABA78324.1 - 1.2e-33 116.0 24.7 1.2e-33 116.0 24.7 1.4 2 0 0 2 2 2 1 BioY family ECF_trnsprt PF12822.7 ABA78324.1 - 0.00036 20.7 23.2 0.00046 20.3 23.2 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component Thia_YuaJ PF09515.10 ABA78324.1 - 9.2 6.2 23.1 0.32 11.0 7.8 2.4 2 1 1 3 3 3 0 Thiamine transporter protein (Thia_YuaJ) CbiQ PF02361.16 ABA78325.1 - 2.9e-11 43.4 12.5 2.5e-10 40.4 12.5 2.1 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 ABA78326.1 - 2.5e-24 86.4 0.0 3.2e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78326.1 - 7.4e-16 58.8 0.3 6.2e-09 36.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA78326.1 - 6.1e-05 22.6 0.0 0.0005 19.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA78326.1 - 0.0008 20.0 0.0 0.0011 19.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA78326.1 - 0.00087 19.0 0.1 0.0016 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 ABA78326.1 - 0.0016 18.6 0.0 0.07 13.4 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 ABA78326.1 - 0.0028 17.9 0.1 0.0065 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA78326.1 - 0.0095 15.7 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 ABA78326.1 - 0.018 14.9 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 ABA78326.1 - 0.02 14.6 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA78326.1 - 0.021 14.7 0.1 0.036 14.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 ABA78326.1 - 0.023 15.1 0.2 0.031 14.7 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.8 ABA78326.1 - 0.028 12.0 0.0 0.042 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_5 PF07728.14 ABA78326.1 - 0.038 14.0 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 ABA78326.1 - 0.039 13.7 0.3 0.086 12.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 ABA78326.1 - 0.062 13.6 0.0 0.089 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 ABA78326.1 - 0.083 13.2 0.0 0.63 10.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 ABA78326.1 - 0.096 11.7 0.1 0.14 11.2 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 ABA78326.1 - 0.11 12.6 0.1 0.22 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 ABA78326.1 - 0.14 10.8 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 ABA78326.1 - 0.16 11.4 0.1 0.25 10.8 0.1 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family DUF87 PF01935.17 ABA78326.1 - 0.17 12.0 0.1 0.25 11.4 0.1 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain Pox_A32 PF04665.12 ABA78326.1 - 0.22 10.9 0.0 0.35 10.3 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein G-alpha PF00503.20 ABA78326.1 - 0.28 10.3 0.0 0.35 10.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DNA_processg_A PF02481.15 ABA78329.1 - 2.6e-70 235.9 0.2 3.4e-70 235.6 0.2 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A DprA_WH PF17782.1 ABA78329.1 - 5.2e-18 64.9 3.1 1.9e-17 63.1 3.1 2.1 1 0 0 1 1 1 1 DprA winged helix domain LDcluster4 PF18306.1 ABA78329.1 - 2.4 7.7 5.2 5.8 6.5 5.1 1.6 1 1 0 1 1 1 0 SLOG cluster4 family Topoisom_bac PF01131.20 ABA78330.1 - 1.8e-125 419.2 0.1 2.6e-125 418.7 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim_C_rpt PF13368.6 ABA78330.1 - 2.2e-58 194.1 4.9 3.9e-22 78.0 0.1 4.7 4 0 0 4 4 4 3 Topoisomerase C-terminal repeat Toprim PF01751.22 ABA78330.1 - 1.6e-25 89.3 0.1 4.9e-25 87.7 0.0 1.9 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 ABA78330.1 - 6e-14 51.5 0.9 4e-13 48.9 1.0 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.6 ABA78330.1 - 0.0089 16.5 0.1 0.047 14.2 0.1 2.3 2 1 0 2 2 2 1 Toprim domain ABC_tran PF00005.27 ABA78331.1 - 4.4e-27 95.3 0.0 6.6e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78331.1 - 7.7e-09 35.8 1.2 1.8e-05 24.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CBS PF00571.28 ABA78331.1 - 0.0018 18.7 0.1 0.37 11.3 0.0 3.1 3 0 0 3 3 3 1 CBS domain AAA_16 PF13191.6 ABA78331.1 - 0.0027 18.1 2.7 0.036 14.5 2.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA78331.1 - 0.0037 17.0 0.2 0.0076 16.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA78331.1 - 0.0041 17.1 0.1 0.0072 16.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 ABA78331.1 - 0.014 14.2 0.1 0.4 9.4 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 ABA78331.1 - 0.015 15.5 0.1 0.022 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA78331.1 - 0.015 15.5 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 ABA78331.1 - 0.026 13.9 0.1 0.62 9.5 0.1 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain PEPCK_ATP PF01293.20 ABA78331.1 - 0.063 11.9 0.1 0.096 11.3 0.1 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase ATPase_2 PF01637.18 ABA78331.1 - 0.17 11.8 0.1 6.4 6.6 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea BPD_transp_1 PF00528.22 ABA78332.1 - 1.5e-23 83.5 15.8 1.5e-23 83.5 15.8 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2518 PF10726.9 ABA78332.1 - 0.3 10.7 5.9 0.12 12.0 0.5 2.3 2 0 0 2 2 2 0 Protein of function (DUF2518) OpuAC PF04069.12 ABA78333.1 - 1.3e-50 172.4 0.0 1.5e-50 172.2 0.0 1.1 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PepSY_2 PF13670.6 ABA78333.1 - 0.021 14.8 0.8 0.072 13.1 0.8 1.8 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DSRB PF10781.9 ABA78333.1 - 0.039 13.6 0.3 0.53 10.0 0.0 2.4 2 0 0 2 2 2 0 Dextransucrase DSRB TetR_C_6 PF13977.6 ABA78334.1 - 1.8e-22 79.7 4.0 2.9e-22 79.1 4.0 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 ABA78334.1 - 1e-10 41.2 0.6 2.3e-10 40.1 0.6 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 ABA78334.1 - 0.024 14.9 7.1 0.025 14.8 6.2 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain UME PF08064.13 ABA78334.1 - 0.039 13.9 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 UME (NUC010) domain MarR_2 PF12802.7 ABA78334.1 - 0.19 11.7 2.8 0.62 10.0 0.0 2.8 3 0 0 3 3 3 0 MarR family Aldedh PF00171.22 ABA78335.1 - 6e-170 565.7 0.5 6.9e-170 565.5 0.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 ABA78335.1 - 0.12 12.4 1.2 0.3 11.1 0.4 2.1 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated GMC_oxred_N PF00732.19 ABA78336.1 - 1e-92 310.7 0.0 1.3e-92 310.3 0.0 1.1 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 ABA78336.1 - 1.2e-40 139.4 0.0 2.3e-40 138.4 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 ABA78336.1 - 2.7e-08 33.3 3.7 0.00022 20.5 1.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 ABA78336.1 - 4.6e-05 23.6 3.6 7.9e-05 22.8 1.1 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA78336.1 - 0.00016 21.0 0.2 0.00041 19.7 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA78336.1 - 0.00038 19.8 0.4 0.0023 17.2 1.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA78336.1 - 0.00057 18.7 0.6 0.0022 16.8 0.4 1.8 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 ABA78336.1 - 0.00086 19.0 1.5 0.00086 19.0 1.5 3.2 3 1 1 4 4 4 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 ABA78336.1 - 0.00096 18.3 0.4 0.0019 17.3 0.4 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 ABA78336.1 - 0.016 14.3 0.5 0.024 13.7 0.5 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Thi4 PF01946.17 ABA78336.1 - 0.017 14.4 0.2 0.027 13.7 0.2 1.3 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.16 ABA78336.1 - 0.023 14.3 1.0 0.049 13.3 1.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 ABA78336.1 - 0.031 13.5 0.3 0.06 12.6 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.7 ABA78336.1 - 0.038 13.3 1.8 0.39 10.0 1.9 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase SNase PF00565.17 ABA78337.2 - 4.1e-14 53.0 0.0 5.6e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DUF2083 PF09856.9 ABA78338.1 - 7.1e-69 230.6 0.0 1.1e-68 230.0 0.0 1.3 1 0 0 1 1 1 1 Predicted transcriptional regulator (DUF2083) Peptidase_M78 PF06114.13 ABA78338.1 - 4.7e-17 62.1 0.7 4.7e-17 62.1 0.7 1.8 2 0 0 2 2 2 1 IrrE N-terminal-like domain HTH_3 PF01381.22 ABA78338.1 - 5.6e-12 45.5 0.0 2.1e-11 43.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 ABA78338.1 - 2.3e-11 43.9 14.1 9.7e-11 41.9 0.0 4.5 5 0 0 5 5 5 2 Helix-turn-helix domain HTH_19 PF12844.7 ABA78338.1 - 1.1e-09 38.1 0.0 4.3e-09 36.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA78338.1 - 0.0011 19.0 0.1 3.9 7.5 0.1 3.6 3 0 0 3 3 3 2 Crp-like helix-turn-helix domain HTH_37 PF13744.6 ABA78338.1 - 0.0093 15.9 0.1 0.057 13.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 ABA78338.1 - 0.043 13.7 0.1 0.27 11.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 ABA78338.1 - 0.059 13.2 0.0 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MFS_1 PF07690.16 ABA78339.1 - 7.1e-42 143.6 64.3 5.8e-32 111.0 26.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 ABA78339.1 - 2.5e-05 22.9 16.9 2.5e-05 22.9 16.9 2.3 1 1 1 2 2 2 1 Transmembrane secretion effector Sugar_tr PF00083.24 ABA78339.1 - 0.00098 18.1 6.5 0.00098 18.1 6.5 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter DMT_6 PF04342.12 ABA78340.1 - 7.6e-47 157.9 7.0 8.6e-47 157.7 7.0 1.0 1 0 0 1 1 1 1 Putative member of DMT superfamily (DUF486) EamA PF00892.20 ABA78340.1 - 0.00023 21.3 11.6 0.00033 20.8 11.6 1.2 1 0 0 1 1 1 1 EamA-like transporter family DUF202 PF02656.15 ABA78340.1 - 0.012 16.0 1.2 0.012 16.0 1.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Bax1-I PF01027.20 ABA78340.1 - 0.04 13.8 8.2 0.051 13.4 8.2 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4131 PF13567.6 ABA78340.1 - 4.3 6.9 13.3 0.96 9.1 2.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Carboxyl_trans PF01039.22 ABA78341.1 - 7e-195 648.3 0.1 8e-195 648.2 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 ABA78341.1 - 0.022 14.2 0.6 0.2 11.1 0.0 2.4 2 1 0 3 3 3 0 Malonate decarboxylase gamma subunit (MdcE) Gly-zipper_OmpA PF13436.6 ABA78344.1 - 0.01 15.6 5.2 0.01 15.6 5.2 2.3 2 0 0 2 2 2 0 Glycine-zipper domain Gly-zipper_Omp PF13488.6 ABA78344.1 - 2.4 8.3 24.1 0.35 10.9 18.8 2.0 1 1 1 2 2 2 0 Glycine zipper CPSase_L_D2 PF02786.17 ABA78345.2 - 5.5e-85 284.2 0.4 1.5e-84 282.8 0.2 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 ABA78345.2 - 8.2e-45 151.9 0.3 1.9e-44 150.7 0.3 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 ABA78345.2 - 2.9e-36 123.8 0.0 2.9e-35 120.6 0.0 2.5 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain PCC_BT PF18140.1 ABA78345.2 - 4.8e-34 117.4 0.0 1e-33 116.4 0.0 1.6 1 0 0 1 1 1 1 Propionyl-coenzyme A carboxylase BT domain Biotin_lipoyl PF00364.22 ABA78345.2 - 2.7e-17 62.3 0.1 7.2e-17 61.0 0.1 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 ABA78345.2 - 1.3e-09 37.9 0.0 2.5e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 ABA78345.2 - 1.8e-09 37.4 0.2 4.1e-09 36.2 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.6 ABA78345.2 - 5.7e-06 26.1 0.0 1.6e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 Biotin-lipoyl like ATP-grasp_3 PF02655.14 ABA78345.2 - 0.00021 21.4 0.0 0.00047 20.3 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 ABA78345.2 - 0.00025 20.7 0.0 0.0013 18.4 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain DUF2118 PF09891.9 ABA78345.2 - 0.0015 18.5 0.0 0.0046 16.9 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2118) QRPTase_N PF02749.16 ABA78345.2 - 0.0017 18.4 0.0 0.0081 16.2 0.0 2.1 2 0 0 2 2 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.6 ABA78345.2 - 0.0056 16.6 0.0 0.018 15.0 0.0 1.8 2 0 0 2 2 1 1 RnfC Barrel sandwich hybrid domain ATP-grasp_5 PF13549.6 ABA78345.2 - 0.011 15.2 0.1 0.03 13.8 0.0 1.7 2 0 0 2 2 1 0 ATP-grasp domain ATP-synt_ab_Xtn PF16886.5 ABA78345.2 - 0.011 15.6 0.1 0.023 14.5 0.1 1.5 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension GARS_A PF01071.19 ABA78345.2 - 0.013 15.3 0.1 0.032 14.0 0.1 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 ABA78345.2 - 0.015 14.5 0.0 0.064 12.5 0.0 1.9 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 ABA78345.2 - 0.029 14.1 0.0 0.071 12.9 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon HlyD_D23 PF16576.5 ABA78345.2 - 0.034 13.4 0.1 0.15 11.2 0.0 1.9 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 ABA78345.2 - 0.043 14.5 0.3 2.2 9.0 0.1 2.8 1 1 1 2 2 2 0 HlyD family secretion protein NQRA PF05896.11 ABA78345.2 - 0.092 12.2 0.0 0.2 11.0 0.0 1.6 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF4174 PF13778.6 ABA78346.1 - 1.6e-17 64.1 0.0 1.1e-16 61.4 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4174) MM_CoA_mutase PF01642.22 ABA78347.1 - 1.1e-241 802.9 2.4 1.3e-241 802.7 2.4 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 ABA78347.1 - 8.3e-16 58.1 0.3 2.2e-15 56.8 0.3 1.7 1 0 0 1 1 1 1 B12 binding domain T2SSM_b PF10741.9 ABA78347.1 - 0.17 11.7 0.7 6.1 6.7 0.2 2.8 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein M subtype b GCV_T PF01571.21 ABA78348.1 - 8.9e-79 264.5 0.2 1e-78 264.2 0.2 1.0 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 ABA78348.1 - 2.7e-20 72.0 0.2 5.7e-20 71.0 0.2 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SPDY PF03771.16 ABA78348.1 - 0.095 12.6 0.3 0.35 10.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF317) GCV_H PF01597.19 ABA78349.1 - 1.9e-41 140.8 0.3 2e-41 140.7 0.3 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 ABA78349.1 - 0.00029 20.6 1.1 0.00029 20.6 1.1 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme GDC-P PF02347.16 ABA78350.1 - 1.8e-189 630.1 0.0 7.4e-178 591.8 0.0 2.9 3 0 0 3 3 3 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 ABA78350.1 - 5e-06 26.0 0.2 1.3e-05 24.6 0.2 1.6 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 ABA78350.1 - 0.00049 19.2 0.2 0.0023 17.0 0.1 1.9 2 0 0 2 2 2 1 Aminotransferase class-V 3HCDH_N PF02737.18 ABA78351.1 - 1.9e-61 207.1 0.7 2.9e-61 206.5 0.7 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 ABA78351.1 - 1.9e-31 109.3 0.1 3e-30 105.4 0.1 2.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 ABA78351.1 - 1.2e-28 99.6 0.1 1.9e-21 76.5 0.0 3.1 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 ABA78351.1 - 4.7e-13 49.3 0.1 1.7e-12 47.5 0.1 1.9 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 ABA78351.1 - 3.6e-06 27.2 0.2 8e-06 26.1 0.2 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.24 ABA78351.1 - 7.7e-05 22.4 0.4 0.00018 21.3 0.4 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 ABA78351.1 - 0.00086 18.9 0.3 0.0014 18.2 0.3 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 ABA78351.1 - 0.0021 17.5 0.1 0.0062 15.9 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.15 ABA78351.1 - 0.0024 17.7 0.8 0.0044 16.9 0.8 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein NAD_binding_8 PF13450.6 ABA78351.1 - 0.0029 17.8 0.4 0.0069 16.6 0.4 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA78351.1 - 0.0033 16.7 0.3 0.0052 16.0 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 ABA78351.1 - 0.024 13.9 0.9 0.041 13.1 0.9 1.2 1 0 0 1 1 1 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 ABA78351.1 - 0.029 14.6 0.5 0.053 13.8 0.5 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 ABA78351.1 - 0.043 14.3 0.0 0.088 13.3 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 ABA78351.1 - 0.053 14.1 5.2 0.31 11.6 5.2 2.3 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 ABA78351.1 - 0.064 13.5 0.1 1.8 8.8 0.1 2.6 2 0 0 2 2 2 0 TrkA-N domain Shikimate_DH PF01488.20 ABA78351.1 - 0.14 12.2 0.1 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 ABA78351.1 - 0.25 11.3 1.0 0.54 10.2 1.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.22 ABA78351.1 - 0.62 9.1 3.6 0.89 8.6 3.6 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Thiolase_N PF00108.23 ABA78352.1 - 2e-53 181.4 0.2 8.3e-49 166.3 0.1 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.18 ABA78352.1 - 1.3e-43 147.6 0.1 1.3e-43 147.6 0.1 2.0 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 ABA78352.1 - 0.00025 20.7 0.9 0.00052 19.7 0.9 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 ABA78352.1 - 0.19 11.6 3.0 1.2 9.1 0.6 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GFA PF04828.14 ABA78353.1 - 2.4e-14 53.5 0.1 3.4e-14 52.9 0.1 1.2 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme ADK_lid PF05191.14 ABA78353.1 - 0.00068 19.6 0.7 0.061 13.3 0.0 2.3 2 0 0 2 2 2 1 Adenylate kinase, active site lid C1_1 PF00130.22 ABA78353.1 - 0.099 12.6 3.4 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Acyl-CoA_dh_C PF12806.7 ABA78354.1 - 1.3e-33 115.8 1.8 2.4e-33 114.9 1.8 1.5 1 0 0 1 1 1 1 Acetyl-CoA dehydrogenase C-terminal like Acyl-CoA_dh_M PF02770.19 ABA78354.1 - 1e-18 67.3 0.0 6.1e-18 64.8 0.0 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 ABA78354.1 - 1.5e-17 64.2 2.5 1.5e-17 64.2 2.5 2.7 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 ABA78354.1 - 1.5e-15 57.9 0.1 3.5e-15 56.6 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain AcylCoA_DH_N PF12418.8 ABA78354.1 - 7.7e-07 29.0 0.0 2.5e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase N terminal Acyl-CoA_dh_2 PF08028.11 ABA78354.1 - 0.00052 20.3 0.1 0.0012 19.1 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.6 ABA78354.1 - 0.035 14.6 0.0 0.078 13.5 0.0 1.6 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal MerR-DNA-bind PF09278.11 ABA78355.2 - 4.7e-18 65.5 9.2 1.7e-17 63.7 9.6 1.7 2 0 0 2 2 2 1 MerR, DNA binding MerR_1 PF13411.6 ABA78355.2 - 1.7e-15 56.8 0.7 3.5e-15 55.8 0.1 1.7 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 ABA78355.2 - 5.4e-10 38.9 0.0 9.7e-10 38.1 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein MerR_2 PF13591.6 ABA78355.2 - 0.0053 16.6 0.2 0.019 14.8 0.0 1.9 1 1 1 2 2 2 1 MerR HTH family regulatory protein Med4 PF10018.9 ABA78355.2 - 0.0057 16.4 1.8 0.0073 16.0 1.8 1.1 1 0 0 1 1 1 1 Vitamin-D-receptor interacting Mediator subunit 4 Ala_racemase_N PF01168.20 ABA78355.2 - 0.0095 15.6 0.3 0.012 15.3 0.3 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Prefoldin PF02996.17 ABA78355.2 - 0.011 15.6 0.6 0.11 12.4 1.0 2.0 2 0 0 2 2 2 0 Prefoldin subunit KxDL PF10241.9 ABA78355.2 - 0.028 14.7 0.5 0.042 14.1 0.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein pXO2-72 PF17443.2 ABA78355.2 - 0.035 14.3 0.1 0.09 13.0 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 HTH_3 PF01381.22 ABA78355.2 - 0.043 13.9 0.4 7.5 6.7 0.0 2.7 2 1 1 3 3 3 0 Helix-turn-helix HTH_23 PF13384.6 ABA78355.2 - 0.047 13.5 0.5 6.6 6.7 0.0 2.8 2 1 0 2 2 2 0 Homeodomain-like domain DUF5595 PF18077.1 ABA78355.2 - 0.095 12.8 0.8 0.14 12.2 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) YqjK PF13997.6 ABA78355.2 - 0.1 12.9 4.8 0.14 12.4 1.1 2.8 2 1 0 3 3 3 0 YqjK-like protein APG6_N PF17675.1 ABA78355.2 - 0.29 11.7 6.8 0.3 11.6 6.8 1.3 1 1 0 1 1 1 0 Apg6 coiled-coil region MerR-DNA-bind PF09278.11 ABA78356.1 - 4.3e-15 56.0 6.2 7.1e-15 55.3 6.2 1.4 1 0 0 1 1 1 1 MerR, DNA binding MerR_1 PF13411.6 ABA78356.1 - 4.1e-12 46.0 0.1 7.2e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 ABA78356.1 - 4.7e-07 29.5 0.1 1e-06 28.4 0.1 1.7 1 0 0 1 1 1 1 MerR family regulatory protein Phage_GP20 PF06810.11 ABA78356.1 - 0.13 12.1 0.1 0.16 11.8 0.1 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 4HBT PF03061.22 ABA78357.1 - 4.8e-18 65.3 0.8 8.4e-18 64.5 0.8 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 ABA78357.1 - 6.1e-07 29.9 7.0 1.8e-06 28.4 6.9 1.7 2 0 0 2 2 2 1 Thioesterase-like superfamily DUF4442 PF14539.6 ABA78357.1 - 3.6e-06 27.2 0.5 5.1e-06 26.7 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT PF03061.22 ABA78358.1 - 2.3e-09 37.5 0.2 1.3e-08 35.1 0.2 2.0 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 ABA78358.1 - 8.5e-07 29.5 0.0 1.3e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase-like superfamily MatE PF01554.18 ABA78359.1 - 6.8e-31 107.1 28.7 8.5e-17 61.3 7.9 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 ABA78359.1 - 0.00077 19.5 5.6 0.00077 19.5 5.6 4.7 3 2 2 6 6 6 3 Polysaccharide biosynthesis C-terminal domain 60KD_IMP PF02096.20 ABA78359.1 - 0.21 11.5 0.3 0.51 10.2 0.3 1.6 1 0 0 1 1 1 0 60Kd inner membrane protein Alph_Pro_TM PF09608.10 ABA78360.1 - 9.1e-76 254.6 0.1 1e-75 254.4 0.1 1.0 1 0 0 1 1 1 1 Putative transmembrane protein (Alph_Pro_TM) TauE PF01925.19 ABA78361.1 - 1.3e-48 165.7 41.7 1.8e-48 165.3 41.7 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DDDD PF10161.9 ABA78361.1 - 1 9.2 3.0 5 6.9 0.0 3.1 2 1 1 3 3 3 0 Putative mitochondrial precursor protein PNP_UDP_1 PF01048.20 ABA78362.1 - 3.4e-50 170.5 0.4 3.9e-50 170.3 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily BPD_transp_2 PF02653.16 ABA78363.1 - 3.4e-35 121.5 32.3 4e-35 121.3 32.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF3726 PF12525.8 ABA78363.1 - 0.088 12.9 0.3 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3726) Prominin PF05478.11 ABA78363.1 - 6.1 4.7 4.1 9.9 4.0 4.1 1.3 1 0 0 1 1 1 0 Prominin BPD_transp_2 PF02653.16 ABA78364.1 - 1.5e-30 106.3 35.5 1.5e-30 106.3 35.5 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 ABA78365.1 - 5.9e-46 156.4 0.0 4.4e-31 108.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA78365.1 - 6.4e-08 32.7 0.6 0.001 19.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA78365.1 - 0.0038 17.0 0.4 0.023 14.4 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA78365.1 - 0.012 16.1 0.0 0.021 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 ABA78365.1 - 0.013 15.0 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA78365.1 - 0.027 14.2 0.1 0.087 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 ABA78365.1 - 0.029 14.3 0.4 0.63 9.9 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Bac_DnaA PF00308.18 ABA78365.1 - 0.063 13.1 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein SMC_N PF02463.19 ABA78365.1 - 0.12 11.8 0.1 0.55 9.6 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 ABA78365.1 - 0.19 11.5 4.3 0.36 10.5 0.1 2.8 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 ABA78365.1 - 0.3 10.0 3.8 1.7 7.6 0.1 2.7 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Bmp PF02608.14 ABA78366.1 - 1.3e-63 214.7 1.1 1.8e-63 214.3 1.1 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_1 PF00532.21 ABA78366.1 - 0.029 13.8 0.2 0.15 11.4 0.1 2.1 1 1 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Acetyltransf_1 PF00583.25 ABA78367.1 - 2.2e-13 50.5 0.0 2.5e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 ABA78367.1 - 1.9e-08 34.1 0.1 2.8e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 ABA78367.1 - 5.4e-08 33.2 0.0 6.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA78367.1 - 1.5e-07 31.4 0.0 1.9e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA78367.1 - 0.0051 16.9 0.0 0.0086 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA78367.1 - 0.01 15.9 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 ABA78367.1 - 0.037 13.7 0.1 0.06 13.0 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 ABA78367.1 - 0.048 13.8 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 ABA78367.1 - 0.051 14.3 0.0 0.067 13.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M22 PF00814.25 ABA78368.1 - 1e-22 81.1 0.2 1.2e-22 81.0 0.2 1.2 1 0 0 1 1 1 1 Glycoprotease family Nfu_N PF08712.11 ABA78369.1 - 1.7e-31 108.1 0.0 2.6e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 Scaffold protein Nfu/NifU N terminal NifU PF01106.17 ABA78369.1 - 1.8e-29 101.7 0.0 2.7e-29 101.1 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain Aminotran_4 PF01063.19 ABA78371.1 - 4.1e-39 134.7 0.0 4.7e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Chlorovi_GP_rpt PF06598.11 ABA78371.1 - 0.15 12.2 0.9 15 5.7 0.2 2.7 2 0 0 2 2 2 0 Chlorovirus glycoprotein repeat Glyoxalase PF00903.25 ABA78372.1 - 5.6e-16 58.9 0.0 7.1e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 ABA78372.1 - 1.6e-05 25.1 0.0 3.9e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 ABA78372.1 - 8.5e-05 23.3 0.1 0.00014 22.6 0.1 1.4 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 ABA78372.1 - 0.027 14.6 0.2 0.039 14.1 0.1 1.6 1 1 0 1 1 1 0 Glyoxalase-like domain YkuD PF03734.14 ABA78373.1 - 4e-13 50.0 0.0 5.6e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain Lip_A_acyltrans PF03279.13 ABA78374.1 - 2.6e-42 145.0 0.0 3.1e-42 144.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase HAD PF12710.7 ABA78374.1 - 0.011 16.2 0.8 0.026 14.9 0.2 2.0 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase FliG_C PF01706.16 ABA78375.1 - 7.3e-30 103.3 4.3 2.9e-26 91.7 1.2 3.2 3 0 0 3 3 3 2 FliG C-terminal domain FliG_N PF14842.6 ABA78375.1 - 1.3e-22 80.3 0.9 6.5e-15 55.6 0.0 3.8 3 1 0 4 4 4 2 FliG N-terminal domain FliG_M PF14841.6 ABA78375.1 - 5.2e-19 68.3 2.3 1.7e-13 50.6 0.1 3.2 3 0 0 3 3 3 2 FliG middle domain MgtE_N PF03448.17 ABA78375.1 - 0.0031 18.1 2.9 0.19 12.4 0.0 3.5 4 0 0 4 4 4 1 MgtE intracellular N domain K-cyclin_vir_C PF09080.10 ABA78375.1 - 0.041 14.3 0.3 3.4 8.1 0.1 2.7 2 0 0 2 2 2 0 K cyclin, C terminal EccE PF11203.8 ABA78375.1 - 3.8 7.9 9.6 1.2 9.5 2.9 3.0 4 0 0 4 4 4 0 Putative type VII ESX secretion system translocon, EccE CBM_14 PF01607.24 ABA78376.1 - 0.013 15.6 0.3 0.018 15.2 0.3 1.2 1 0 0 1 1 1 0 Chitin binding Peritrophin-A domain Lyase_1 PF00206.20 ABA78377.1 - 5.6e-53 180.4 0.1 8.4e-53 179.8 0.1 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 ABA78377.1 - 7.9e-30 103.2 1.7 1.6e-29 102.2 0.2 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus T2SSK PF03934.13 ABA78377.1 - 0.0045 16.4 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein K ASL_C PF08328.11 ABA78377.1 - 0.024 14.7 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal DUF2526 PF10735.9 ABA78377.1 - 0.092 12.9 0.5 0.42 10.8 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2526) DUF333 PF03891.15 ABA78378.2 - 2.6e-24 85.2 0.1 3.2e-24 84.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF333) SmaI PF17411.2 ABA78378.2 - 0.28 10.3 0.0 0.31 10.2 0.0 1.0 1 0 0 1 1 1 0 Type II site-specific deoxyribonuclease ACR_tran PF00873.19 ABA78379.1 - 4.3e-262 872.2 12.7 4.9e-262 872.0 12.7 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 ABA78379.1 - 1.5e-11 43.9 40.8 2.7e-06 26.5 20.4 3.2 2 1 1 3 3 3 2 MMPL family HlyD_D23 PF16576.5 ABA78380.1 - 1.4e-25 89.8 0.1 2e-25 89.3 0.1 1.2 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 ABA78380.1 - 2e-17 63.8 0.7 8.1e-14 52.2 0.1 2.8 3 0 0 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 ABA78380.1 - 2.5e-15 56.0 0.9 3.3e-09 36.4 0.1 2.8 2 0 0 2 2 2 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 ABA78380.1 - 4.7e-05 23.1 0.0 0.054 13.3 0.0 2.4 2 0 0 2 2 2 2 Biotin-requiring enzyme DUF4398 PF14346.6 ABA78380.1 - 0.11 13.1 12.8 0.051 14.2 9.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) CBM_48 PF02922.18 ABA78382.1 - 1.8e-18 66.7 0.0 4.6e-18 65.4 0.0 1.8 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 ABA78382.1 - 7e-17 62.0 0.0 2.6e-11 43.7 0.0 3.2 2 1 0 2 2 2 2 Alpha amylase, catalytic domain GlgX_C PF18390.1 ABA78382.1 - 7.8e-05 22.4 0.0 0.0002 21.1 0.0 1.6 1 0 0 1 1 1 1 Glycogen debranching enzyme C-terminal domain Glyco_hydro_70 PF02324.16 ABA78382.1 - 0.035 12.3 0.0 0.048 11.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 Cellulase PF00150.18 ABA78382.1 - 0.11 11.9 0.0 4.1 6.7 0.0 2.1 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) NTP_transferase PF00483.23 ABA78383.1 - 1.6e-50 172.0 0.0 2e-50 171.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 ABA78383.1 - 9.1e-14 52.1 1.5 1.5e-13 51.4 1.5 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain CheB_methylest PF01339.17 ABA78385.1 - 1.9e-52 177.4 0.0 3.6e-52 176.5 0.0 1.5 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 ABA78385.1 - 1.4e-48 165.0 0.0 2.6e-48 164.1 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain HWE_HK PF07536.14 ABA78385.1 - 1.6e-20 73.6 0.6 1.6e-20 73.6 0.6 2.1 2 0 0 2 2 1 1 HWE histidine kinase PAS_10 PF13596.6 ABA78385.1 - 7.6e-19 68.3 0.0 1.2e-15 58.0 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 ABA78385.1 - 1.7e-18 66.9 2.1 2e-13 50.5 0.1 2.8 2 0 0 2 2 2 2 PAS fold CheR_N PF03705.15 ABA78385.1 - 6.8e-10 38.5 0.1 1.7e-09 37.2 0.1 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain HisKA_2 PF07568.12 ABA78385.1 - 2.4e-08 34.0 0.8 9.5e-08 32.0 0.8 2.1 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 ABA78385.1 - 0.00047 20.4 0.0 0.11 12.7 0.0 2.8 2 0 0 2 2 2 1 PAS domain Spc7 PF08317.11 ABA78385.1 - 0.00066 18.6 4.7 0.00066 18.6 4.7 2.0 2 0 0 2 2 2 1 Spc7 kinetochore protein PAS PF00989.25 ABA78385.1 - 0.0011 18.9 0.0 0.0045 17.0 0.0 2.2 2 0 0 2 2 1 1 PAS fold KASH_CCD PF14662.6 ABA78385.1 - 0.0017 18.2 10.6 0.0017 18.2 10.6 1.7 2 0 0 2 2 1 1 Coiled-coil region of CCDC155 or KASH ATG16 PF08614.11 ABA78385.1 - 0.0035 17.6 3.5 0.0035 17.6 3.5 2.1 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) UPF0242 PF06785.11 ABA78385.1 - 0.014 15.5 1.5 0.025 14.7 1.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Tropomyosin PF00261.20 ABA78385.1 - 0.022 14.1 11.6 0.045 13.1 11.6 1.4 1 0 0 1 1 1 0 Tropomyosin Methyltransf_12 PF08242.12 ABA78385.1 - 0.025 15.3 0.0 0.37 11.5 0.0 2.8 2 1 0 2 2 1 0 Methyltransferase domain CCDC-167 PF15188.6 ABA78385.1 - 0.046 14.1 5.8 0.18 12.2 5.8 2.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 NRBF2 PF08961.10 ABA78385.1 - 0.066 12.8 2.0 0.14 11.7 2.0 1.5 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator PAS_8 PF13188.7 ABA78385.1 - 0.092 12.8 0.0 0.77 9.9 0.0 2.6 2 0 0 2 2 1 0 PAS domain OmpH PF03938.14 ABA78385.1 - 0.094 13.0 6.8 0.3 11.4 3.4 2.3 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) HATPase_c_2 PF13581.6 ABA78385.1 - 0.096 12.6 0.0 0.33 10.9 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Seryl_tRNA_N PF02403.22 ABA78385.1 - 0.15 12.3 9.9 1.6 9.0 6.7 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Phage_GP20 PF06810.11 ABA78385.1 - 0.24 11.2 4.9 0.46 10.3 4.9 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 Exonuc_VII_L PF02601.15 ABA78385.1 - 0.31 10.6 4.9 2.4 7.6 0.7 2.2 2 0 0 2 2 2 0 Exonuclease VII, large subunit FapA PF03961.13 ABA78385.1 - 0.35 9.4 2.5 0.38 9.3 0.9 1.7 2 0 0 2 2 2 0 Flagellar Assembly Protein A Csm1_N PF18504.1 ABA78385.1 - 0.37 11.1 8.5 0.98 9.8 8.5 1.7 1 0 0 1 1 1 0 Csm1 N-terminal domain ZapB PF06005.12 ABA78385.1 - 0.45 11.0 19.0 0.5 10.8 11.2 3.1 2 1 1 3 3 3 0 Cell division protein ZapB DLP_helical PF18709.1 ABA78385.1 - 0.52 9.4 5.8 0.68 9.1 3.6 1.9 2 0 0 2 2 2 0 Dynamin-like helical domain Jnk-SapK_ap_N PF09744.9 ABA78385.1 - 0.69 10.1 12.4 0.19 12.0 6.1 2.3 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF2203 PF09969.9 ABA78385.1 - 1.1 10.0 8.2 0.25 12.1 2.2 2.5 3 0 0 3 3 2 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.11 ABA78385.1 - 2.2 8.9 8.6 0.86 10.2 4.1 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal HIP1_clath_bdg PF16515.5 ABA78385.1 - 3 8.5 15.3 1.2 9.7 9.2 2.5 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Lebercilin PF15619.6 ABA78385.1 - 3.9 7.1 13.8 0.3 10.7 5.8 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease UPF0449 PF15136.6 ABA78385.1 - 4.6 7.8 13.5 2.9 8.4 9.1 2.7 2 1 0 2 2 1 0 Uncharacterised protein family UPF0449 H-kinase_dim PF02895.14 ABA78385.1 - 5.1 7.6 7.1 51 4.4 0.1 3.0 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain GIT_CC PF16559.5 ABA78385.1 - 6.5 6.7 8.7 6.3 6.8 4.3 2.6 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4686 PF15742.5 ABA78385.1 - 6.6 5.8 16.0 0.16 11.1 9.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4686) Baculo_PEP_C PF04513.12 ABA78385.1 - 6.6 6.8 13.9 12 5.9 5.7 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus FUSC PF04632.12 ABA78385.1 - 6.8 5.1 9.5 1.3 7.4 1.4 2.2 2 0 0 2 2 2 0 Fusaric acid resistance protein family Fez1 PF06818.15 ABA78385.1 - 7.6 6.9 9.0 0.64 10.4 3.5 1.8 2 0 0 2 2 2 0 Fez1 Prefoldin_3 PF13758.6 ABA78385.1 - 7.8 6.6 7.1 0.42 10.7 1.6 1.7 2 0 0 2 2 1 0 Prefoldin subunit Response_reg PF00072.24 ABA78386.2 - 8.3e-08 32.4 0.0 1.5e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 Response regulator receiver domain ATP-synt_I PF03899.15 ABA78387.1 - 0.00068 20.0 0.4 0.0008 19.7 0.4 1.2 1 0 0 1 1 1 1 ATP synthase I chain DUF2754 PF10953.8 ABA78387.1 - 0.025 14.8 1.1 0.032 14.5 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2754) LapA_dom PF06305.11 ABA78387.1 - 0.036 13.9 5.7 0.6 10.0 0.0 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain 2TM PF13239.6 ABA78387.1 - 0.04 14.2 0.1 0.052 13.9 0.1 1.1 1 0 0 1 1 1 0 2TM domain VirB3 PF05101.13 ABA78387.1 - 0.053 13.8 0.2 0.067 13.4 0.2 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Halogen_Hydrol PF10112.9 ABA78387.1 - 0.16 12.0 0.2 0.16 12.0 0.2 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein ABC2_membrane_3 PF12698.7 ABA78387.1 - 0.2 10.7 1.7 0.23 10.5 1.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF543 PF04418.12 ABA78387.1 - 0.7 9.9 3.3 0.96 9.5 3.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF543) DUF4130 PF13566.6 ABA78388.2 - 8.4e-38 129.7 0.1 1.1e-37 129.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 UDG PF03167.19 ABA78388.2 - 3.2e-34 118.1 0.0 6.3e-34 117.2 0.0 1.4 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Radical_SAM PF04055.21 ABA78389.1 - 1.2e-06 29.0 0.0 2.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 ABA78389.1 - 0.0034 17.6 0.0 0.0072 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 ABA78389.1 - 0.0095 16.5 0.0 0.024 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Beta-lactamase PF00144.24 ABA78390.2 - 9.1e-25 87.6 4.4 2.7e-24 86.0 4.4 1.6 1 1 0 1 1 1 1 Beta-lactamase MarR_2 PF12802.7 ABA78391.1 - 5.6e-16 58.2 1.0 5.6e-16 58.2 1.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.22 ABA78391.1 - 9.7e-15 54.3 0.1 1.9e-14 53.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 ABA78391.1 - 3.6e-10 40.2 0.1 7.4e-10 39.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 ABA78391.1 - 3.6e-08 32.8 0.1 8.8e-08 31.6 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 ABA78391.1 - 0.0003 20.7 0.2 0.00051 20.0 0.2 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 ABA78391.1 - 0.00043 20.0 0.1 0.0008 19.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 ABA78391.1 - 0.0058 16.5 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 ABA78391.1 - 0.0095 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 ABA78391.1 - 0.024 14.5 3.1 0.036 13.9 1.5 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain EnY2 PF10163.9 ABA78391.1 - 0.024 15.0 0.0 0.04 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcription factor e(y)2 Penicillinase_R PF03965.16 ABA78391.1 - 0.034 14.5 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor SMC_ScpB PF04079.16 ABA78391.1 - 0.11 12.1 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB Phage_CI_repr PF07022.13 ABA78391.1 - 0.14 12.3 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF1198 PF06711.11 ABA78391.1 - 0.18 11.9 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) HTH_23 PF13384.6 ABA78391.1 - 0.28 11.0 4.3 0.37 10.6 0.2 2.7 3 0 0 3 3 3 0 Homeodomain-like domain HTH_31 PF13560.6 ABA78391.1 - 2.8 8.3 8.9 4 7.9 4.7 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain HlyD_3 PF13437.6 ABA78392.1 - 8.8e-21 74.6 0.8 1.5e-14 54.6 0.0 2.8 2 1 1 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 ABA78392.1 - 1.5e-17 63.5 2.7 1.1e-13 50.9 0.0 2.7 3 0 0 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 ABA78392.1 - 2.8e-16 59.0 3.8 1.2e-12 47.4 0.0 3.7 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 ABA78392.1 - 1.4e-08 34.5 0.5 2e-08 34.0 0.5 1.3 1 0 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 ABA78392.1 - 0.00042 20.1 0.1 0.43 10.4 0.0 2.4 2 0 0 2 2 2 2 Biotin-requiring enzyme OEP PF02321.18 ABA78392.1 - 0.09 12.6 16.5 0.19 11.5 16.5 1.5 1 0 0 1 1 1 0 Outer membrane efflux protein ERp29 PF07749.12 ABA78392.1 - 0.13 13.2 1.0 0.24 12.3 1.0 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain MFS_1 PF07690.16 ABA78393.1 - 6.8e-51 173.2 56.4 1.9e-50 171.8 55.7 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA78393.1 - 2.7e-08 33.1 7.4 2.7e-08 33.1 7.4 2.8 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 ABA78393.1 - 7e-05 21.4 26.5 8.7e-05 21.1 10.5 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 ABA78393.1 - 0.0059 15.0 0.1 0.0059 15.0 0.1 3.2 2 2 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family SpoU_methylase PF00588.19 ABA78394.1 - 6.2e-34 117.2 0.0 1.2e-33 116.3 0.0 1.4 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 ABA78394.1 - 1.5e-08 34.8 0.0 3.2e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 RNA 2'-O ribose methyltransferase substrate binding Methyltrn_RNA_4 PF09936.9 ABA78394.1 - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase CoA_binding_2 PF13380.6 ABA78395.1 - 9.5e-37 126.0 0.1 1.1e-36 125.8 0.1 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 ABA78395.1 - 0.00059 20.5 0.0 0.00098 19.8 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain SpoU_sub_bind PF08032.12 ABA78395.1 - 0.097 13.0 0.0 0.8 10.0 0.0 2.0 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding TGT PF01702.18 ABA78395.1 - 0.11 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase PRA-PH PF01503.17 ABA78396.1 - 9.6e-18 64.4 0.8 1.1e-17 64.3 0.8 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 ABA78396.1 - 0.0012 18.9 0.5 0.0017 18.5 0.5 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain FCD PF07729.12 ABA78396.1 - 0.069 13.6 1.9 0.15 12.5 1.9 1.7 1 1 0 1 1 1 0 FCD domain His_biosynth PF00977.21 ABA78397.1 - 1.6e-87 292.8 0.1 1.8e-87 292.6 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 ABA78397.1 - 1.9e-05 24.3 6.5 0.011 15.2 2.5 2.1 1 1 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 ABA78397.1 - 0.0001 21.8 0.0 0.017 14.5 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 ABA78397.1 - 0.00042 19.5 0.1 0.48 9.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 ABA78397.1 - 0.00058 19.2 0.2 0.93 8.8 0.1 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 ABA78397.1 - 0.0011 18.3 0.4 0.29 10.3 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.25 ABA78397.1 - 0.0018 17.3 0.9 0.37 9.7 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 ABA78397.1 - 0.007 15.7 4.7 0.45 9.8 0.2 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 ABA78397.1 - 1.9 7.4 5.9 4.5 6.2 0.1 2.4 1 1 0 2 2 2 0 FMN-dependent dehydrogenase His_biosynth PF00977.21 ABA78398.1 - 9.9e-78 260.7 0.7 1.1e-77 260.5 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 ABA78398.1 - 1.5e-07 30.8 0.7 0.0026 16.9 0.1 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) DUF561 PF04481.12 ABA78398.1 - 0.019 14.2 0.1 0.027 13.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ThiG PF05690.14 ABA78398.1 - 0.083 12.2 10.2 0.14 11.4 4.0 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 ABA78398.1 - 0.12 11.7 1.7 0.99 8.7 0.1 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase NMO PF03060.15 ABA78398.1 - 9.4 5.5 12.3 0.085 12.2 2.5 2.0 2 0 0 2 2 2 0 Nitronate monooxygenase DUF2147 PF09917.9 ABA78399.1 - 2.4e-18 66.8 0.1 3.5e-18 66.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2147) GATase PF00117.28 ABA78400.1 - 4.5e-18 65.7 0.0 5.2e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 ABA78400.1 - 3.6e-06 27.0 0.0 0.00067 19.5 0.0 2.2 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 ABA78400.1 - 0.00017 21.4 0.9 0.00068 19.4 0.9 1.8 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 ABA78400.1 - 0.0032 17.1 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 ABA78400.1 - 0.1 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain IGPD PF00475.18 ABA78401.1 - 2.3e-66 222.5 1.0 3.5e-66 221.9 1.0 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase EFG_IV PF03764.18 ABA78402.2 - 4.4e-39 133.0 0.1 9.1e-39 132.0 0.1 1.6 1 0 0 1 1 1 1 Elongation factor G, domain IV GTP_EFTU PF00009.27 ABA78402.2 - 1e-23 83.9 0.0 1.8e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_II PF14492.6 ABA78402.2 - 5.8e-21 74.4 0.0 1.4e-20 73.2 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 ABA78402.2 - 1.4e-15 57.1 0.0 3.2e-15 55.9 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus RF3_C PF16658.5 ABA78402.2 - 3.6e-06 26.8 0.0 7e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 ABA78402.2 - 0.011 15.8 0.0 0.027 14.6 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRPRB PF09439.10 ABA78402.2 - 0.025 14.0 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 ABA78402.2 - 0.051 13.1 0.0 5.5 6.5 0.0 3.0 3 0 0 3 3 3 0 Ferrous iron transport protein B NUC202 PF08166.12 ABA78402.2 - 0.071 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 NUC202 domain RsgA_GTPase PF03193.16 ABA78402.2 - 0.16 11.9 0.0 3 7.7 0.0 2.7 2 1 1 3 3 3 0 RsgA GTPase MFS_1 PF07690.16 ABA78403.1 - 3.5e-41 141.3 46.6 5.1e-41 140.8 46.6 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA78403.1 - 6e-10 38.6 8.1 6e-10 38.6 8.1 2.5 2 2 0 2 2 2 1 Sugar (and other) transporter MFS_5 PF05631.14 ABA78403.1 - 2.4e-05 23.4 1.0 4.2e-05 22.6 1.0 1.3 1 0 0 1 1 1 1 Sugar-tranasporters, 12 TM MFS_1_like PF12832.7 ABA78403.1 - 0.0006 18.8 13.1 0.00062 18.7 3.2 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 ABA78403.1 - 0.58 9.4 37.0 0.64 9.3 30.0 2.5 1 1 1 2 2 2 0 Uncharacterised MFS-type transporter YbfB Abhydrolase_6 PF12697.7 ABA78404.1 - 6.4e-25 89.1 13.4 7.4e-25 88.8 13.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA78404.1 - 1.9e-05 24.4 1.2 0.00036 20.3 1.3 2.4 2 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA78404.1 - 2.8e-05 23.5 1.0 0.00062 19.1 1.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 ABA78404.1 - 0.0047 16.8 0.1 0.056 13.3 0.1 2.1 2 0 0 2 2 2 1 Serine hydrolase Thioesterase PF00975.20 ABA78404.1 - 0.0068 16.5 0.1 0.0072 16.5 0.1 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_5 PF12695.7 ABA78404.1 - 0.021 14.6 0.0 0.029 14.1 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase family Abhydrolase_6 PF12697.7 ABA78405.1 - 3.7e-23 83.3 4.3 4.3e-23 83.1 4.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA78405.1 - 6e-23 81.8 0.0 2e-20 73.5 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA78405.1 - 2.3e-10 40.1 0.0 3.3e-09 36.4 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 ABA78405.1 - 0.0039 17.3 0.0 0.008 16.3 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein UPF0227 PF05728.12 ABA78405.1 - 0.061 13.3 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Ndr PF03096.14 ABA78405.1 - 0.073 11.8 0.0 0.17 10.5 0.0 1.6 1 1 0 1 1 1 0 Ndr family Abhydrolase_5 PF12695.7 ABA78405.1 - 0.075 12.8 0.0 8.1 6.2 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family PALP PF00291.25 ABA78406.1 - 2.6e-73 247.0 5.4 3.2e-73 246.7 5.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Abhydrolase_6 PF12697.7 ABA78407.1 - 1.7e-12 48.4 6.3 2e-12 48.2 6.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA78407.1 - 1.5e-11 44.4 0.0 2.6e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA78407.1 - 0.0049 16.2 0.0 0.0096 15.2 0.0 1.5 2 0 0 2 2 2 1 Serine aminopeptidase, S33 ABC_membrane PF00664.23 ABA78408.1 - 7.4e-43 147.2 12.0 9.3e-43 146.8 12.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 ABA78408.1 - 9.9e-35 120.0 0.0 1.7e-34 119.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA78408.1 - 8.3e-08 31.9 0.2 3.1e-06 26.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA78408.1 - 1.2e-05 25.8 2.5 0.00021 21.7 2.5 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 ABA78408.1 - 9.7e-05 22.3 0.1 0.012 15.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 ABA78408.1 - 0.00012 21.4 0.2 0.00053 19.3 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin DEAD PF00270.29 ABA78408.1 - 0.00014 21.7 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.6 ABA78408.1 - 0.00015 22.1 0.0 0.0014 18.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA78408.1 - 0.00048 19.9 0.2 0.0013 18.5 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 ABA78408.1 - 0.0013 19.1 0.0 0.0096 16.3 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA78408.1 - 0.005 16.8 0.0 0.061 13.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 ABA78408.1 - 0.0058 16.6 0.0 0.21 11.5 0.0 2.3 1 1 0 1 1 1 1 NTPase RsgA_GTPase PF03193.16 ABA78408.1 - 0.01 15.8 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 ABA78408.1 - 0.015 15.1 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 ABA78408.1 - 0.022 14.3 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 ABA78408.1 - 0.023 14.4 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 ABA78408.1 - 0.026 14.7 0.1 0.073 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 ABA78408.1 - 0.027 14.2 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA78408.1 - 0.043 13.4 3.3 0.11 12.0 0.2 2.5 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 ABA78408.1 - 0.063 13.8 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 ABA78408.1 - 0.069 11.9 0.2 0.18 10.6 0.1 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 ABA78408.1 - 0.094 13.3 0.0 0.22 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 ABA78408.1 - 0.094 12.4 0.8 1.2 8.9 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein cobW PF02492.19 ABA78408.1 - 0.12 11.9 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 ABA78408.1 - 0.13 12.3 0.0 0.66 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 ABA78408.1 - 0.15 11.4 0.0 10 5.5 0.0 2.9 3 0 0 3 3 3 0 Bacterial TniB protein TsaE PF02367.17 ABA78408.1 - 0.19 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 ABA78408.1 - 0.19 11.6 0.0 0.47 10.3 0.0 1.6 2 0 0 2 2 1 0 Rad17 P-loop domain Guanylate_kin PF00625.21 ABA78408.1 - 0.2 11.3 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase AMP-binding PF00501.28 ABA78409.1 - 4.3e-83 279.3 0.0 5.5e-83 278.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA78409.1 - 2.6e-15 57.2 0.4 2.6e-15 57.2 0.4 2.7 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain Tyr_Deacylase PF02580.16 ABA78410.1 - 1.1e-52 178.4 0.0 1.2e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 D-Tyr-tRNA(Tyr) deacylase PfkB PF00294.24 ABA78411.1 - 4.5e-44 151.0 0.1 5.3e-44 150.7 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase SAICAR_synt PF01259.18 ABA78412.1 - 2.5e-77 259.9 0.0 2.9e-77 259.7 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PD40 PF07676.12 ABA78412.1 - 0.072 13.1 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat SNARE_assoc PF09335.11 ABA78413.1 - 1e-10 42.2 8.8 2e-10 41.2 8.7 1.5 1 1 0 1 1 1 1 SNARE associated Golgi protein zf-ribbon_3 PF13248.6 ABA78414.1 - 0.0023 17.3 10.5 0.37 10.3 0.1 3.8 3 1 0 3 3 3 2 zinc-ribbon domain Nudix_N_2 PF14803.6 ABA78414.1 - 0.0043 16.9 10.1 0.011 15.6 1.3 3.7 3 1 0 3 3 3 1 Nudix N-terminal zf-NADH-PPase PF09297.11 ABA78414.1 - 0.0056 16.3 11.5 0.073 12.7 2.7 2.8 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 ABA78414.1 - 0.013 15.5 7.5 0.63 10.1 0.5 2.4 2 1 0 2 2 2 0 Double zinc ribbon zf-C2HC5 PF06221.13 ABA78414.1 - 0.038 14.0 5.9 0.051 13.6 0.3 2.8 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type HypA PF01155.19 ABA78414.1 - 0.038 14.0 2.9 3.3 7.8 0.1 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 ABA78414.1 - 0.052 13.5 0.3 0.052 13.5 0.3 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 ABA78414.1 - 0.15 11.6 8.1 4.6 6.8 0.7 3.3 2 2 1 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 ABA78414.1 - 0.26 11.1 11.9 0.62 9.9 2.4 3.4 2 2 0 2 2 2 0 zinc-ribbon domain YacG PF03884.14 ABA78414.1 - 0.27 11.0 2.2 0.84 9.4 2.3 1.8 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG zf-RRN7 PF11781.8 ABA78414.1 - 0.28 10.9 9.8 0.81 9.4 5.1 3.1 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 IBR PF01485.21 ABA78414.1 - 0.3 11.4 2.9 0.87 9.9 0.1 2.2 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain DNA_ligase_ZBD PF03119.16 ABA78414.1 - 0.74 9.9 4.7 14 5.8 0.7 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.6 ABA78414.1 - 0.96 9.4 8.0 2.5 8.1 1.3 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-Sec23_Sec24 PF04810.15 ABA78414.1 - 1.1 9.3 7.2 23 5.1 0.6 3.6 2 2 1 3 3 3 0 Sec23/Sec24 zinc finger Ribosomal_S27e PF01667.17 ABA78414.1 - 1.8 8.3 7.5 2.2 8.1 1.6 2.4 2 0 0 2 2 2 0 Ribosomal protein S27 DUF1451 PF07295.11 ABA78414.1 - 2.6 8.1 9.1 8.4 6.4 1.3 2.4 2 1 0 2 2 2 0 Zinc-ribbon containing domain OrfB_Zn_ribbon PF07282.11 ABA78414.1 - 3.2 7.8 6.7 3.3 7.7 1.0 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain CpXC PF14353.6 ABA78414.1 - 6.9 6.7 7.4 9 6.4 1.0 3.4 2 1 1 3 3 3 0 CpXC protein Prim_Zn_Ribbon PF08273.12 ABA78414.1 - 7.2 7.0 12.9 7.9 6.9 3.1 3.2 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase RecR PF02132.15 ABA78414.1 - 9 6.0 6.5 1.7 8.2 0.3 2.6 3 0 0 3 3 3 0 RecR protein Band_7_1 PF13421.6 ABA78415.1 - 1.5e-98 328.7 0.0 1.8e-98 328.4 0.0 1.1 1 0 0 1 1 1 1 SPFH domain-Band 7 family GYF_2 PF14237.6 ABA78415.1 - 7.9e-18 64.0 2.9 6.4e-17 61.1 0.4 2.6 2 0 0 2 2 2 1 GYF domain 2 Band_7 PF01145.25 ABA78415.1 - 1.1e-13 51.6 0.0 1.5e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family CAP_N PF01213.19 ABA78415.1 - 1.9 7.9 5.9 3.1 7.2 5.9 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF2927 PF11150.8 ABA78417.1 - 3.6e-68 229.7 0.0 4.3e-68 229.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2927) TelA PF05816.11 ABA78418.1 - 7.2e-106 354.0 9.2 8.4e-106 353.8 9.2 1.0 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) Halogen_Hydrol PF10112.9 ABA78419.1 - 7.9e-21 74.9 0.0 2.4e-20 73.4 0.0 1.7 1 1 0 1 1 1 1 5-bromo-4-chloroindolyl phosphate hydrolysis protein S4 PF01479.25 ABA78420.1 - 6.7e-13 48.1 2.3 2.7e-12 46.2 0.2 2.5 2 0 0 2 2 2 1 S4 domain PseudoU_synth_2 PF00849.22 ABA78420.1 - 3.3e-11 43.5 0.0 2.7e-10 40.6 0.0 2.0 1 1 0 1 1 1 1 RNA pseudouridylate synthase dCMP_cyt_deam_1 PF00383.23 ABA78421.1 - 2.6e-25 88.3 1.0 3.2e-25 87.9 1.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 ABA78421.1 - 3e-24 85.3 0.0 3.2e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 ABA78421.1 - 6.9e-05 22.9 3.0 0.002 18.2 1.1 2.6 1 1 1 2 2 2 1 Bd3614-like deaminase SNAD4 PF18750.1 ABA78421.1 - 0.023 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 AA_kinase PF00696.28 ABA78421.1 - 0.037 13.6 0.1 0.041 13.5 0.1 1.1 1 0 0 1 1 1 0 Amino acid kinase family APOBEC_N PF08210.11 ABA78421.1 - 0.13 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 APOBEC-like N-terminal domain APOBEC2 PF18772.1 ABA78421.1 - 0.14 12.2 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 APOBEC2 Lactamase_B_3 PF13483.6 ABA78422.1 - 1.4e-17 64.1 0.1 2.2e-17 63.4 0.0 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 ABA78422.1 - 1.1e-14 54.4 0.2 1.5e-14 54.0 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 ABA78422.1 - 3.1e-10 40.4 4.6 3.7e-10 40.1 4.6 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Ceramidase PF05875.12 ABA78423.2 - 3.3e-08 33.3 0.6 6.3e-08 32.4 0.6 1.5 1 1 0 1 1 1 1 Ceramidase Glu-tRNAGln PF02686.15 ABA78424.1 - 9.9e-21 73.8 0.2 1.2e-20 73.5 0.2 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 ABA78425.1 - 5e-147 490.5 0.1 5.7e-147 490.3 0.1 1.0 1 0 0 1 1 1 1 Amidase Peptidase_M9_N PF08453.10 ABA78425.1 - 0.1 12.3 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Peptidase family M9 N-terminal Excalibur PF05901.11 ABA78426.2 - 0.012 16.2 0.1 0.026 15.1 0.1 1.7 1 0 0 1 1 1 0 Excalibur calcium-binding domain Amidase_2 PF01510.25 ABA78427.1 - 2e-28 99.4 0.0 2.7e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase AMP-binding PF00501.28 ABA78428.2 - 1.5e-06 27.1 0.1 2.3e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.6 ABA78428.2 - 0.00088 19.5 0.1 0.0026 18.0 0.1 1.8 1 1 0 1 1 1 1 AMP-binding enzyme C-terminal domain ABC_tran PF00005.27 ABA78429.1 - 6.3e-25 88.3 0.0 9e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78429.1 - 9.5e-11 42.0 0.8 0.00026 20.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA78429.1 - 0.00012 21.8 0.3 0.00027 20.6 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA78429.1 - 0.00014 22.4 0.0 0.00016 22.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA78429.1 - 0.00024 20.9 1.6 0.0014 18.4 1.6 2.0 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.8 ABA78429.1 - 0.00052 19.9 0.0 0.00098 19.0 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter ABC_ATPase PF09818.9 ABA78429.1 - 0.0024 16.7 0.3 0.2 10.4 0.9 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_19 PF13245.6 ABA78429.1 - 0.0038 17.6 0.8 0.008 16.5 0.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 ABA78429.1 - 0.0092 15.6 0.1 0.016 14.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 ABA78429.1 - 0.01 15.3 0.1 0.043 13.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MukB PF04310.12 ABA78429.1 - 0.01 15.7 0.2 0.019 14.8 0.2 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_15 PF13175.6 ABA78429.1 - 0.014 15.1 0.0 0.022 14.5 0.0 1.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 ABA78429.1 - 0.017 15.4 0.2 0.041 14.2 0.2 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 ABA78429.1 - 0.039 13.6 0.1 0.073 12.7 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 ABA78429.1 - 0.12 12.6 0.7 0.26 11.5 0.7 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 ABA78429.1 - 0.16 10.6 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 ABA78429.1 - 0.17 12.3 0.1 0.45 10.9 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 ABA78429.1 - 0.19 11.7 0.1 0.33 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Peripla_BP_6 PF13458.6 ABA78430.1 - 6.1e-71 239.9 4.7 8e-71 239.5 4.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein BPD_transp_2 PF02653.16 ABA78431.1 - 6.8e-30 104.1 42.3 8.6e-30 103.8 42.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA78432.1 - 8.3e-25 87.5 41.1 1e-24 87.2 41.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 ABA78433.1 - 2.9e-32 112.0 0.0 3.8e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 ABA78433.1 - 3.3e-10 39.6 0.0 5.7e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 ABA78433.1 - 0.0001 22.3 0.0 0.021 14.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 ABA78433.1 - 0.00099 18.9 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA78433.1 - 0.0011 18.6 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA78433.1 - 0.0014 18.2 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 ABA78433.1 - 0.0015 18.5 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 ABA78433.1 - 0.0026 17.4 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA78433.1 - 0.0037 17.8 0.3 0.0059 17.1 0.3 1.2 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 ABA78433.1 - 0.031 14.3 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Dynamin family AAA_16 PF13191.6 ABA78433.1 - 0.12 12.7 0.0 0.17 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AMP-binding PF00501.28 ABA78434.1 - 3.4e-84 282.9 0.0 4.1e-84 282.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme PAS_7 PF12860.7 ABA78435.1 - 2.5e-39 134.0 0.1 1.1e-38 131.9 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 ABA78435.1 - 2.4e-15 57.0 0.0 5.3e-15 55.9 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA78435.1 - 1.6e-13 50.8 0.0 3.2e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 ABA78435.1 - 2e-10 40.9 5.8 1.2e-06 28.7 0.0 3.8 3 1 0 3 3 3 2 PAS fold HisKA PF00512.25 ABA78435.1 - 0.0014 18.6 1.5 0.0023 17.9 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain T2SSB PF16537.5 ABA78435.1 - 0.032 13.8 0.0 0.077 12.6 0.0 1.6 1 0 0 1 1 1 0 Type II secretion system protein B SOAR PF16533.5 ABA78435.1 - 0.036 14.0 0.3 0.076 13.0 0.3 1.4 1 0 0 1 1 1 0 STIM1 Orai1-activating region Phage_cap_E PF03864.15 ABA78435.1 - 0.039 13.1 2.1 0.4 9.8 0.0 2.2 2 0 0 2 2 2 0 Phage major capsid protein E HATPase_c_3 PF13589.6 ABA78435.1 - 0.085 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA78436.1 - 3.3e-23 82.0 0.0 4.5e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA78436.1 - 1.7e-17 63.3 0.0 5.4e-17 61.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Chromate_transp PF02417.15 ABA78437.1 - 1.2e-67 226.9 35.3 4e-34 118.0 11.0 2.3 2 0 0 2 2 2 2 Chromate transporter Ribosomal_S4 PF00163.19 ABA78438.1 - 3.3e-25 88.8 2.2 5.3e-25 88.2 2.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 ABA78438.1 - 6.9e-19 67.3 0.1 1.4e-18 66.3 0.1 1.5 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 ABA78438.1 - 0.0045 16.8 1.1 0.0063 16.3 0.1 1.7 2 0 0 2 2 2 1 S4 domain Aminotran_1_2 PF00155.21 ABA78439.1 - 2.9e-48 164.9 0.0 3.3e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 ABA78439.1 - 0.00043 19.3 0.0 0.00065 18.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.13 ABA78439.1 - 0.023 13.6 0.0 0.034 13.0 0.0 1.1 1 0 0 1 1 1 0 Allinase DegT_DnrJ_EryC1 PF01041.17 ABA78439.1 - 0.038 13.3 0.1 0.052 12.8 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PDH PF02153.17 ABA78440.1 - 1.8e-75 253.3 0.0 2.1e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 ABA78440.1 - 4.1e-10 40.1 3.0 7.4e-10 39.3 2.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 ABA78440.1 - 5.2e-09 36.5 1.6 2e-08 34.6 1.6 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 ABA78440.1 - 0.00011 21.9 0.2 0.00018 21.2 0.2 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 ABA78440.1 - 0.0065 15.9 0.2 0.012 15.0 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 ABA78440.1 - 0.021 14.8 0.4 0.038 14.0 0.1 1.7 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.24 ABA78440.1 - 0.049 14.1 0.3 0.085 13.3 0.3 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.16 ABA78440.1 - 0.058 13.0 1.9 0.057 13.1 0.6 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 ABA78440.1 - 0.4 11.5 2.4 0.41 11.5 0.6 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Extensin-like_C PF06904.12 ABA78441.1 - 3.3e-43 147.8 0.0 4.5e-43 147.3 0.0 1.1 1 0 0 1 1 1 1 Extensin-like protein C-terminus Peptidase_M15_3 PF08291.11 ABA78441.1 - 0.019 15.1 0.1 0.032 14.3 0.1 1.3 1 0 0 1 1 1 0 Peptidase M15 DUF2125 PF09898.9 ABA78442.1 - 2e-65 221.5 22.7 2.3e-65 221.4 22.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2125) HemY_N PF07219.13 ABA78442.1 - 1.6 8.9 7.4 16 5.7 2.8 2.5 2 0 0 2 2 2 0 HemY protein N-terminus ChaC PF04752.12 ABA78443.1 - 1.9e-47 161.6 0.0 2.2e-47 161.4 0.0 1.0 1 0 0 1 1 1 1 ChaC-like protein AIG2_2 PF13772.6 ABA78443.1 - 0.036 14.5 0.0 0.053 13.9 0.0 1.2 1 0 0 1 1 1 0 AIG2-like family MotA_ExbB PF01618.16 ABA78444.1 - 0.01 15.5 3.2 0.013 15.3 0.7 2.4 2 1 0 2 2 2 0 MotA/TolQ/ExbB proton channel family DUF4231 PF14015.6 ABA78444.1 - 0.022 15.3 0.8 5.6 7.5 0.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) SKA2 PF16740.5 ABA78444.1 - 0.18 11.6 4.9 10 5.9 0.8 3.0 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 DHC_N1 PF08385.12 ABA78444.1 - 0.22 10.1 0.0 4.8 5.7 0.0 2.1 2 0 0 2 2 2 0 Dynein heavy chain, N-terminal region 1 Baculo_PEP_C PF04513.12 ABA78444.1 - 1.2 9.1 3.6 45 4.1 0.1 3.2 2 1 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus OmpA PF00691.20 ABA78445.2 - 3e-20 72.4 0.7 4.1e-19 68.8 0.0 3.0 2 1 1 3 3 3 1 OmpA family BLOC1_2 PF10046.9 ABA78445.2 - 0.01 16.1 10.1 0.02 15.2 1.2 4.3 2 2 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Bacillus_HBL PF05791.11 ABA78445.2 - 0.32 10.8 4.5 0.32 10.8 0.3 2.8 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Peptidase_C98 PF15499.6 ABA78445.2 - 1.2 8.5 2.2 2.9 7.3 0.1 2.3 2 1 0 2 2 2 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase Spc7 PF08317.11 ABA78445.2 - 2.1 7.2 43.6 0.29 10.0 7.2 3.4 1 1 1 3 3 3 0 Spc7 kinetochore protein HTH_Tnp_1 PF01527.20 ABA78446.1 - 4.8e-06 26.8 0.4 7.8e-06 26.1 0.4 1.3 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 ABA78446.1 - 0.024 14.5 2.4 0.037 13.8 1.6 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HV_small_capsid PF17086.5 ABA78446.1 - 0.036 14.4 0.0 0.051 13.9 0.0 1.2 1 0 0 1 1 1 0 Small capsid protein of Herpesviridae HTH_Tnp_ISL3 PF13542.6 ABA78446.1 - 0.097 12.1 2.0 0.4 10.1 0.7 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 ABA78446.1 - 0.17 12.0 3.4 0.31 11.2 1.5 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_2 PF07724.14 ABA78447.1 - 1.9e-51 174.6 0.0 4.4e-48 163.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 ABA78447.1 - 3.9e-28 97.4 1.2 8.4e-28 96.3 1.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 ABA78447.1 - 3.1e-27 95.6 0.0 5e-13 49.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 ABA78447.1 - 1.4e-23 82.8 0.0 5.4e-23 80.8 0.0 2.1 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 ABA78447.1 - 1.6e-19 70.2 0.0 1.4e-12 47.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 ABA78447.1 - 1.3e-12 48.5 1.6 2.3e-05 24.8 0.0 4.2 3 1 1 4 4 4 2 AAA ATPase domain Clp_N PF02861.20 ABA78447.1 - 4.7e-12 45.8 0.9 1.7e-11 44.1 0.9 2.1 1 0 0 1 1 1 1 Clp amino terminal domain, pathogenicity island component Sigma54_activat PF00158.26 ABA78447.1 - 4e-09 36.4 0.1 5.3e-05 23.0 0.0 2.9 3 0 0 3 3 3 2 Sigma-54 interaction domain RuvB_N PF05496.12 ABA78447.1 - 7.3e-08 32.3 3.2 0.019 14.7 0.0 4.3 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 ABA78447.1 - 1.6e-07 30.9 0.0 0.041 13.3 0.0 3.4 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 ABA78447.1 - 6.6e-07 29.7 5.3 0.052 13.8 0.1 4.9 4 2 0 4 4 3 2 AAA domain AAA_18 PF13238.6 ABA78447.1 - 7e-07 29.8 0.0 0.044 14.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain TniB PF05621.11 ABA78447.1 - 1.1e-06 28.2 0.0 0.018 14.4 0.0 3.6 2 1 0 2 2 2 1 Bacterial TniB protein AAA_3 PF07726.11 ABA78447.1 - 3.1e-06 27.1 0.0 0.0017 18.2 0.0 3.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 ABA78447.1 - 5.6e-06 26.0 0.0 0.14 11.6 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region IstB_IS21 PF01695.17 ABA78447.1 - 1e-05 25.3 0.0 0.0085 15.8 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.6 ABA78447.1 - 3.5e-05 23.8 0.0 0.13 12.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 ABA78447.1 - 6.3e-05 23.2 0.3 0.12 12.6 0.0 3.1 4 0 0 4 4 2 1 AAA domain AAA_25 PF13481.6 ABA78447.1 - 0.00011 21.9 0.9 0.018 14.6 0.0 3.0 3 0 0 3 3 3 1 AAA domain TIP49 PF06068.13 ABA78447.1 - 0.00016 21.0 0.0 0.042 13.1 0.0 2.6 2 0 0 2 2 2 1 TIP49 P-loop domain RNA_helicase PF00910.22 ABA78447.1 - 0.0002 21.7 0.0 0.66 10.4 0.0 2.6 2 1 0 2 2 2 2 RNA helicase AAA_6 PF12774.7 ABA78447.1 - 0.00035 19.7 0.0 0.00078 18.5 0.0 1.5 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region TsaE PF02367.17 ABA78447.1 - 0.00048 20.1 0.0 1.4 8.9 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 ABA78447.1 - 0.0019 18.1 0.0 0.28 11.1 0.0 2.7 2 0 0 2 2 2 1 NACHT domain ResIII PF04851.15 ABA78447.1 - 0.0024 17.9 0.0 0.26 11.3 0.0 2.9 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit Zeta_toxin PF06414.12 ABA78447.1 - 0.0031 16.8 0.0 2.5 7.3 0.0 2.9 2 0 0 2 2 2 1 Zeta toxin DNA_pol3_delta2 PF13177.6 ABA78447.1 - 0.01 15.6 0.0 1 9.1 0.0 3.3 3 0 0 3 3 3 0 DNA polymerase III, delta subunit AAA_24 PF13479.6 ABA78447.1 - 0.016 14.9 0.0 4.6 6.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_8 PF12780.7 ABA78447.1 - 0.025 13.9 0.0 0.95 8.7 0.0 2.9 2 1 0 2 2 2 0 P-loop containing dynein motor region D4 AAA_17 PF13207.6 ABA78447.1 - 0.027 14.9 0.2 6.5 7.2 0.0 2.8 3 0 0 3 3 2 0 AAA domain Torsin PF06309.11 ABA78447.1 - 0.036 14.2 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 1 0 Torsin NTPase_1 PF03266.15 ABA78447.1 - 0.039 13.8 0.1 22 4.9 0.0 3.3 3 0 0 3 3 3 0 NTPase SRP54 PF00448.22 ABA78447.1 - 0.059 13.0 0.1 6.6 6.3 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Roc PF08477.13 ABA78447.1 - 0.06 13.6 0.0 1.6 9.0 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_29 PF13555.6 ABA78447.1 - 0.065 13.0 0.0 17 5.2 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain Rad17 PF03215.15 ABA78447.1 - 0.067 13.1 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_28 PF13521.6 ABA78447.1 - 0.077 13.2 0.0 13 6.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA78447.1 - 0.12 12.3 0.0 13 5.6 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 ABA78447.1 - 0.14 11.3 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.6 ABA78447.1 - 0.16 12.3 0.5 11 6.3 0.1 3.2 3 1 0 3 3 3 0 AAA domain HAGH_C PF16123.5 ABA78448.1 - 2.1e-22 79.4 0.0 3.2e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxyacylglutathione hydrolase C-terminus Lactamase_B PF00753.27 ABA78448.1 - 1.5e-19 70.8 3.6 5.7e-19 68.9 3.4 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA78448.1 - 0.00036 20.1 0.8 0.00053 19.6 0.8 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 ABA78448.1 - 0.0038 16.7 0.0 0.0053 16.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TrkA_C PF02080.21 ABA78448.1 - 0.054 13.3 0.2 0.14 12.0 0.1 1.8 2 0 0 2 2 2 0 TrkA-C domain Methyltransf_11 PF08241.12 ABA78449.1 - 0.00039 21.0 0.0 0.00062 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA78449.1 - 0.00039 20.3 0.0 0.00049 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 ABA78449.1 - 0.21 10.9 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family OSCP PF00213.18 ABA78450.1 - 6.3e-45 153.4 2.2 7.1e-45 153.2 2.2 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit PCP_red PF08369.10 ABA78450.1 - 0.0032 17.7 1.1 0.0096 16.1 0.1 2.2 2 0 0 2 2 2 1 Proto-chlorophyllide reductase 57 kD subunit ATP-synt_ab PF00006.25 ABA78451.1 - 5e-74 248.5 0.2 9e-74 247.7 0.0 1.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 ABA78451.1 - 1e-44 151.9 0.0 2.3e-44 150.8 0.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 ABA78451.1 - 8.9e-18 64.6 5.5 9.3e-18 64.5 3.5 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 ABA78451.1 - 3.9e-05 23.7 0.9 9.6e-05 22.5 0.9 1.7 1 0 0 1 1 1 1 HAS barrel domain Fe_dep_repress PF01325.19 ABA78451.1 - 0.11 12.7 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ATP-synt PF00231.19 ABA78452.1 - 5.8e-93 311.6 0.1 6.5e-93 311.5 0.1 1.0 1 0 0 1 1 1 1 ATP synthase ATP-synt_ab PF00006.25 ABA78453.1 - 6.6e-60 202.4 0.0 1e-59 201.8 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 ABA78453.1 - 7.7e-23 80.8 1.5 1.8e-22 79.6 1.5 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain NB-ARC PF00931.22 ABA78453.1 - 0.0056 15.9 0.4 0.012 14.8 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain T3SS_ATPase_C PF18269.1 ABA78453.1 - 0.021 14.6 0.4 0.17 11.8 0.4 2.2 1 1 0 1 1 1 0 T3SS EscN ATPase C-terminal domain ATPase_2 PF01637.18 ABA78453.1 - 0.031 14.2 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 ABA78453.1 - 0.087 12.0 0.0 1.1 8.5 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 ABA78453.1 - 0.088 13.1 0.1 0.29 11.5 0.1 1.8 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA78453.1 - 0.15 11.9 0.1 0.3 11.0 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_DE_N PF02823.16 ABA78454.1 - 9.6e-23 79.9 0.0 1.3e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DUF4010 PF13194.6 ABA78454.1 - 0.046 13.4 0.1 0.058 13.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) PAS_3 PF08447.12 ABA78454.1 - 0.047 14.0 0.0 0.078 13.3 0.0 1.3 1 0 0 1 1 1 0 PAS fold Pribosyltran_N PF13793.6 ABA78455.1 - 4.6e-48 162.0 0.5 3.1e-43 146.4 0.1 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 ABA78455.1 - 1.1e-21 77.7 1.7 2.4e-21 76.6 0.7 2.0 2 1 0 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 ABA78455.1 - 3.2e-19 69.0 2.3 5.5e-19 68.2 1.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 ABA78455.1 - 0.0075 15.7 0.3 0.012 15.1 0.3 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Beta_elim_lyase PF01212.21 ABA78456.1 - 4.1e-48 164.1 0.0 5.8e-48 163.7 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 ABA78456.1 - 0.02 13.9 0.0 0.034 13.1 0.0 1.3 1 1 0 1 1 1 0 Aminotransferase class-V CxxCxxCC PF03692.15 ABA78457.1 - 4.2e-09 37.0 7.5 8.1e-09 36.1 7.5 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain FAD_syn PF06574.12 ABA78458.1 - 3.9e-47 160.1 0.0 5.1e-47 159.7 0.0 1.1 1 0 0 1 1 1 1 FAD synthetase Flavokinase PF01687.17 ABA78458.1 - 1.1e-34 119.1 0.0 1.6e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 Riboflavin kinase CTP_transf_like PF01467.26 ABA78458.1 - 0.0038 17.4 0.1 0.028 14.6 0.1 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like Nif11 PF07862.11 ABA78458.1 - 0.027 14.8 0.3 0.19 12.0 0.0 2.4 3 0 0 3 3 3 0 Nif11 domain TPR_4 PF07721.14 ABA78458.1 - 0.55 11.0 4.1 23 6.0 0.4 3.3 2 0 0 2 2 2 0 Tetratricopeptide repeat MaoC_dehydratas PF01575.19 ABA78459.1 - 5.9e-25 87.2 0.0 7.2e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 ABA78459.1 - 3.2e-10 40.3 0.0 4.7e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 ABA78459.1 - 0.00035 20.9 0.1 0.00073 19.8 0.1 1.6 1 1 0 1 1 1 1 Thioesterase superfamily Hydrolase_6 PF13344.6 ABA78460.1 - 2.9e-15 56.2 0.0 5.5e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA78460.1 - 9.1e-11 41.7 0.0 1.9e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 ABA78460.1 - 9.1e-07 29.4 0.0 0.0045 17.3 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 ABA78460.1 - 0.0011 19.1 0.0 0.0033 17.5 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DHHA2 PF02833.14 ABA78461.1 - 1.3e-18 67.5 0.1 1.9e-18 67.0 0.1 1.2 1 0 0 1 1 1 1 DHHA2 domain DHH PF01368.20 ABA78461.1 - 1.8e-15 57.0 0.0 2.9e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 DHH family TraB PF01963.17 ABA78463.2 - 9.8e-59 199.4 0.0 1.2e-58 199.1 0.0 1.1 1 0 0 1 1 1 1 TraB family Cpn10 PF00166.21 ABA78464.1 - 2.9e-34 117.0 0.0 3.1e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Cpn60_TCP1 PF00118.24 ABA78465.1 - 2.9e-100 336.3 15.4 4.6e-100 335.6 15.4 1.3 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family SH3_4 PF06347.13 ABA78466.1 - 4.7e-34 116.0 4.7 2.2e-18 65.8 0.2 2.4 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_3 PF08239.11 ABA78466.1 - 7.8e-10 38.9 0.1 1.7e-05 25.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial SH3 domain DUF3693 PF12472.8 ABA78466.1 - 0.0055 16.3 0.4 0.012 15.2 0.4 1.6 1 0 0 1 1 1 1 Phage related protein SCAB-Ig PF16709.5 ABA78466.1 - 0.12 12.4 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 Ig domain of plant-specific actin-binding protein 2-Hacid_dh_C PF02826.19 ABA78467.1 - 2.9e-57 192.9 0.0 6.2e-57 191.8 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA78467.1 - 1.3e-31 109.1 0.0 1.4e-31 108.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 ABA78467.1 - 8.1e-07 29.3 0.0 2.7e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 ABA78467.1 - 0.0013 19.3 0.0 0.0062 17.1 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 ABA78467.1 - 0.078 12.5 0.0 0.29 10.7 0.0 2.0 2 1 1 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 ABA78467.1 - 0.15 12.9 0.0 0.29 12.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Aldo_ket_red PF00248.21 ABA78468.1 - 3.6e-49 167.5 0.0 4.2e-47 160.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DAO PF01266.24 ABA78470.1 - 1.9e-58 198.7 4.9 2.3e-58 198.5 4.9 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 ABA78470.1 - 7.7e-06 25.2 4.1 0.00016 20.9 0.5 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.6 ABA78470.1 - 0.00019 21.5 0.1 0.2 11.6 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 ABA78470.1 - 0.00054 19.3 0.1 0.064 12.5 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA78470.1 - 0.0018 17.1 0.1 0.015 14.0 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 ABA78470.1 - 0.0037 17.5 0.7 0.0098 16.1 0.3 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 ABA78470.1 - 0.011 14.8 3.4 0.17 10.9 0.1 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein Thi4 PF01946.17 ABA78470.1 - 0.012 14.9 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Thi4 family FAD_oxidored PF12831.7 ABA78470.1 - 0.036 13.4 0.4 0.059 12.7 0.4 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 ABA78470.1 - 0.045 12.8 0.6 0.72 8.9 0.3 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.27 ABA78470.1 - 0.093 13.3 0.1 0.42 11.2 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 ABA78470.1 - 0.21 11.4 0.2 0.43 10.4 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 ABA78470.1 - 0.24 11.0 0.2 1.1 8.8 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fe-ADH PF00465.19 ABA78471.1 - 1.7e-111 372.6 2.8 1.9e-111 372.4 2.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 ABA78471.1 - 1.2e-17 64.4 1.9 6.3e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Aldedh PF00171.22 ABA78472.1 - 2e-118 395.8 0.1 2.3e-118 395.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Gln-synt_C PF00120.24 ABA78473.1 - 2.1e-108 362.4 0.5 2.5e-108 362.1 0.5 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 ABA78473.1 - 0.0051 16.5 0.0 0.023 14.4 0.0 2.1 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain DctP PF03480.13 ABA78474.1 - 1.6e-27 96.6 0.0 2.1e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DctM PF06808.12 ABA78475.1 - 2.8e-66 224.1 50.7 3.5e-66 223.8 50.7 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component Na_H_antiporter PF03553.14 ABA78475.1 - 0.0001 21.7 11.5 0.0001 21.7 11.5 3.2 2 1 0 3 3 3 1 Na+/H+ antiporter family SLATT_fungal PF18142.1 ABA78475.1 - 1.8 8.6 4.1 12 5.9 0.2 2.6 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain DctQ PF04290.12 ABA78476.1 - 4.6e-22 78.3 10.4 4.6e-22 78.3 10.4 1.4 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component FGase PF05013.12 ABA78477.2 - 1.5e-41 143.0 0.3 1.8e-41 142.7 0.3 1.1 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase DUF5560 PF17715.1 ABA78477.2 - 0.029 13.8 0.1 0.087 12.3 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5560) SIS PF01380.22 ABA78478.1 - 5.8e-17 61.8 0.0 8.3e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 SIS domain HTH_6 PF01418.17 ABA78478.1 - 1.1e-16 60.6 0.0 2.6e-16 59.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family HTH_Tnp_ISL3 PF13542.6 ABA78478.1 - 0.018 14.4 0.2 0.34 10.4 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 ABA78478.1 - 0.048 13.6 0.3 0.22 11.4 0.1 2.2 2 0 0 2 2 2 0 MarR family MarR PF01047.22 ABA78478.1 - 0.077 12.9 0.1 0.45 10.5 0.0 2.3 3 0 0 3 3 3 0 MarR family YdaS_antitoxin PF15943.5 ABA78478.1 - 0.077 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Ntox3 PF15536.6 ABA78478.1 - 0.16 12.0 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial toxin 3 HTH_1 PF00126.27 ABA78478.1 - 0.62 10.1 0.1 0.62 10.1 0.1 2.3 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family FTSW_RODA_SPOVE PF01098.19 ABA78479.1 - 3.5e-95 319.1 26.8 4.5e-95 318.7 26.8 1.0 1 0 0 1 1 1 1 Cell cycle protein Transpeptidase PF00905.22 ABA78480.1 - 2.4e-62 210.9 0.0 3.2e-62 210.5 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 ABA78480.1 - 3.2e-36 125.3 0.0 5.5e-36 124.6 0.0 1.4 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain MreC PF04085.14 ABA78482.1 - 3.3e-30 105.0 0.0 4.9e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 rod shape-determining protein MreC DUF4131 PF13567.6 ABA78482.1 - 0.11 12.2 0.7 0.5 10.0 0.2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) MreB_Mbl PF06723.13 ABA78483.1 - 3.1e-142 473.2 6.4 3.5e-142 473.0 6.4 1.0 1 0 0 1 1 1 1 MreB/Mbl protein Actin PF00022.19 ABA78483.1 - 2.1e-11 43.1 0.0 3.8e-08 32.4 0.0 2.1 1 1 0 2 2 2 2 Actin FtsA PF14450.6 ABA78483.1 - 9.8e-10 38.8 1.9 1.7e-09 38.0 0.1 2.2 2 1 0 2 2 2 1 Cell division protein FtsA HSP70 PF00012.20 ABA78483.1 - 8.9e-09 34.1 0.7 1.5e-08 33.4 0.3 1.6 2 1 0 2 2 2 1 Hsp70 protein PilM_2 PF11104.8 ABA78483.1 - 1.4e-08 34.1 0.3 0.0083 15.2 0.0 3.1 3 0 0 3 3 3 2 Type IV pilus assembly protein PilM; EutA PF06277.11 ABA78483.1 - 0.0011 17.9 0.6 0.0011 17.9 0.6 1.7 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA CMD PF02627.20 ABA78483.1 - 0.0043 17.1 0.3 0.14 12.2 0.0 2.7 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Ppx-GppA PF02541.16 ABA78483.1 - 0.032 13.7 0.1 0.067 12.6 0.1 1.5 1 0 0 1 1 1 0 Ppx/GppA phosphatase family Acyl_transf_3 PF01757.22 ABA78484.1 - 1.7e-18 66.8 24.2 2.2e-18 66.4 24.2 1.1 1 0 0 1 1 1 1 Acyltransferase family ApoO PF09769.9 ABA78484.1 - 0.57 10.2 2.5 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 Apolipoprotein O HMGL-like PF00682.19 ABA78485.1 - 1.1e-93 313.6 2.2 1.1e-93 313.6 2.2 1.7 2 1 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 ABA78485.1 - 2.9e-37 127.6 1.9 5.2e-37 126.7 1.9 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF2529 PF10740.9 ABA78485.1 - 0.072 12.7 0.8 2.9 7.5 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF2529) Copper-bind PF00127.20 ABA78486.1 - 3.6e-05 24.1 0.0 5.9e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family MORN PF02493.20 ABA78487.1 - 6.5e-101 324.6 90.2 8.4e-08 31.7 0.7 19.2 19 0 0 19 19 19 18 MORN repeat SM-ATX PF14438.6 ABA78487.1 - 1.3e-06 28.5 14.5 8.4 6.6 0.0 9.5 10 2 2 12 12 12 3 Ataxin 2 SM domain Rib PF08428.10 ABA78487.1 - 0.035 14.1 16.7 5.2 7.1 0.1 6.2 6 1 1 7 7 7 0 Rib/alpha-like repeat Ubiquitin_3 PF14836.6 ABA78487.1 - 0.084 12.9 0.5 19 5.3 0.0 3.5 4 0 0 4 4 4 0 Ubiquitin-like domain NAD_synthase PF02540.17 ABA78488.1 - 1.2e-68 230.8 0.0 1.7e-68 230.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 ABA78488.1 - 4.7e-27 95.0 0.0 6.6e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Asn_synthase PF00733.21 ABA78488.1 - 0.002 17.8 0.2 0.0035 17.1 0.2 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 ABA78488.1 - 0.026 13.3 0.0 0.038 12.8 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase PfkB PF00294.24 ABA78489.1 - 2.3e-35 122.4 0.1 2.8e-35 122.1 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 ABA78489.1 - 0.063 12.6 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase FMN_red PF03358.15 ABA78490.1 - 4.2e-13 49.3 0.1 5.8e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 ABA78490.1 - 3e-08 33.6 0.3 9.3e-08 32.0 0.1 1.9 1 1 2 3 3 3 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 ABA78490.1 - 0.0025 18.1 0.0 0.63 10.3 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.25 ABA78490.1 - 0.058 13.6 0.1 0.31 11.2 0.1 2.0 1 1 0 1 1 1 0 Flavodoxin Peptidase_M48 PF01435.18 ABA78492.1 - 1.2e-15 57.8 0.0 1.7e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 PRC PF05239.16 ABA78494.1 - 1.1e-11 44.6 0.0 1.3e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Radical_SAM PF04055.21 ABA78496.2 - 1.2e-28 100.6 0.0 1.7e-25 90.3 0.0 2.9 3 0 0 3 3 3 2 Radical SAM superfamily UPF0004 PF00919.20 ABA78496.2 - 1.4e-17 63.6 0.0 2.4e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM_2 PF18693.1 ABA78496.2 - 1.5e-17 63.5 1.2 2.8e-17 62.6 1.2 1.5 1 0 0 1 1 1 1 TRAM domain CLP1_P PF16575.5 ABA78496.2 - 0.17 11.6 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Aminotran_1_2 PF00155.21 ABA78497.1 - 2.3e-40 138.9 0.0 2.6e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 ABA78497.1 - 5e-06 26.1 0.0 8.8e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_MocR PF12897.7 ABA78497.1 - 0.013 14.3 0.1 0.062 12.1 0.0 2.1 2 1 0 2 2 2 0 Alanine-glyoxylate amino-transferase Cys_Met_Meta_PP PF01053.20 ABA78497.1 - 0.048 12.2 0.0 0.071 11.6 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 ABA78497.1 - 0.054 12.2 0.0 0.084 11.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III Beta_elim_lyase PF01212.21 ABA78497.1 - 0.099 11.9 0.0 0.14 11.4 0.0 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase Pribosyltran PF00156.27 ABA78498.1 - 1.5e-25 89.5 0.0 1.8e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain LysE PF01810.18 ABA78499.1 - 4.5e-29 101.3 11.6 5.9e-29 100.9 11.6 1.1 1 0 0 1 1 1 1 LysE type translocator adh_short_C2 PF13561.6 ABA78500.1 - 7.3e-88 294.1 0.1 8.4e-88 293.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78500.1 - 1e-18 67.5 0.0 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78500.1 - 0.0025 17.8 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 KR domain PNP_phzG_C PF10590.9 ABA78501.1 - 3.4e-18 65.4 4.5 6.6e-18 64.5 4.5 1.5 1 0 0 1 1 1 1 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Putative_PNPOx PF01243.20 ABA78501.1 - 1.4e-17 63.6 0.0 2.3e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.7 ABA78501.1 - 1.5e-05 25.6 0.0 2.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CSD PF00313.22 ABA78502.1 - 8.6e-30 102.4 1.3 5e-15 55.1 0.0 2.1 2 0 0 2 2 2 2 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA78502.1 - 6.6e-06 25.7 0.9 0.02 14.6 0.0 2.6 2 1 0 2 2 2 2 Ribonuclease B OB domain DUF192 PF02643.15 ABA78503.1 - 5.7e-30 103.3 0.0 7e-30 103.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GARP PF16731.5 ABA78506.1 - 0.013 15.2 7.3 0.013 15.2 7.3 2.2 2 0 0 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma RPAP1_N PF08621.10 ABA78506.1 - 1.1 9.1 5.3 28 4.6 0.1 3.7 4 0 0 4 4 4 0 RPAP1-like, N-terminal PhageMin_Tail PF10145.9 ABA78508.1 - 0.00085 19.2 6.0 0.00085 19.2 6.0 3.4 3 0 0 3 3 3 2 Phage-related minor tail protein Terminase_1 PF03354.15 ABA78509.2 - 1.4e-60 205.2 0.0 1.6e-60 205.0 0.0 1.0 1 0 0 1 1 1 1 Phage Terminase Terminase_6 PF03237.15 ABA78509.2 - 0.014 15.1 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Terminase-like family Terminase_4 PF05119.12 ABA78510.1 - 1.1e-16 61.0 0.0 1.7e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Phage terminase, small subunit Phage_H_T_join PF05521.11 ABA78511.1 - 7.1e-19 68.1 0.6 7.9e-19 68.0 0.6 1.0 1 0 0 1 1 1 1 Phage head-tail joining protein DUF3168 PF11367.8 ABA78512.1 - 4.3e-20 72.0 1.3 5e-20 71.8 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) HK97-gp10_like PF04883.12 ABA78513.1 - 5.3e-15 56.2 0.0 1.5e-14 54.7 0.0 1.6 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component Minor_capsid_2 PF11114.8 ABA78513.1 - 0.048 13.7 0.0 0.2 11.7 0.0 1.9 1 1 0 1 1 1 0 Minor capsid protein DUF5403 PF17395.2 ABA78513.1 - 0.1 12.9 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5403) 5_3_exonuc_N PF02739.16 ABA78514.2 - 0.11 12.5 0.0 0.93 9.4 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain Mrr_cat PF04471.12 ABA78514.2 - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease HNH PF01844.23 ABA78515.1 - 6.8e-07 29.4 0.2 1.9e-06 27.9 0.2 1.8 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 ABA78515.1 - 0.04 13.8 0.4 0.04 13.8 0.4 2.3 2 1 0 2 2 2 0 HNH endonuclease Phage_TAC_6 PF09550.10 ABA78516.1 - 0.046 14.2 0.3 0.046 14.2 0.3 2.8 4 0 0 4 4 4 0 Phage tail assembly chaperone protein, TAC TetR_C_16 PF17920.1 ABA78516.1 - 0.16 12.2 0.3 0.16 12.2 0.3 1.8 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Phage_capsid PF05065.13 ABA78517.2 - 1.6e-80 270.4 0.0 2.5e-80 269.8 0.0 1.3 1 0 0 1 1 1 1 Phage capsid family Peptidase_S78 PF04586.17 ABA78517.2 - 6.1e-22 78.5 0.0 1e-21 77.8 0.0 1.3 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_TAC_11 PF11836.8 ABA78518.1 - 4.8e-28 97.2 0.5 5.3e-28 97.0 0.5 1.0 1 0 0 1 1 1 1 Phage tail tube protein, GTA-gp10 Phage_portal PF04860.12 ABA78519.1 - 6.9e-85 285.0 0.0 7.9e-85 284.8 0.0 1.0 1 0 0 1 1 1 1 Phage portal protein Phage_integrase PF00589.22 ABA78520.1 - 1.2e-10 41.4 0.0 3.4e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 ABA78520.1 - 0.0069 16.7 0.0 0.023 15.0 0.0 1.8 2 0 0 2 2 2 1 Phage integrase SAM-like domain Sigma70_r3 PF04539.16 ABA78520.1 - 0.041 14.0 0.3 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 Phage_int_SAM_1 PF02899.17 ABA78520.1 - 0.09 13.1 0.4 0.36 11.2 0.1 2.3 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain UTRA PF07702.13 ABA78521.1 - 1.4e-26 93.0 0.0 2e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 ABA78521.1 - 4.9e-14 51.7 0.0 1.1e-13 50.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.6 ABA78521.1 - 0.2 11.4 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain adh_short_C2 PF13561.6 ABA78522.1 - 3.4e-63 213.3 9.2 4e-63 213.1 9.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78522.1 - 4.5e-52 176.3 4.5 5.3e-52 176.1 4.5 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78522.1 - 6.3e-11 42.5 6.0 8.4e-11 42.1 6.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA78522.1 - 7e-05 22.4 0.5 0.00012 21.6 0.5 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 ABA78522.1 - 0.0029 16.8 0.0 0.0039 16.4 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3HCDH_N PF02737.18 ABA78522.1 - 0.0029 17.5 0.9 0.0046 16.9 0.9 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 ABA78522.1 - 0.021 15.1 0.5 0.033 14.4 0.5 1.3 1 0 0 1 1 1 0 TrkA-N domain Aldolase_II PF00596.21 ABA78523.1 - 9.2e-49 165.9 0.3 1.1e-48 165.7 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Peripla_BP_4 PF13407.6 ABA78524.1 - 3.4e-48 164.5 4.9 4.1e-48 164.2 4.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_3 PF13377.6 ABA78524.1 - 2e-09 38.0 0.0 4.2e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 ABA78524.1 - 4.7e-07 29.5 0.2 6.9e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_tran PF00005.27 ABA78525.1 - 7.4e-51 172.3 0.0 1.1e-26 94.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA78525.1 - 1.1e-10 41.9 2.0 0.0018 18.2 0.5 3.1 2 1 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA78525.1 - 5.5e-05 23.0 1.2 0.00036 20.3 0.4 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 ABA78525.1 - 0.00014 21.4 1.6 1 8.7 0.1 3.2 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA78525.1 - 0.00019 21.1 0.9 0.0014 18.3 0.2 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.29 ABA78525.1 - 0.0011 19.4 0.7 0.018 15.5 0.7 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 ABA78525.1 - 0.002 17.4 0.0 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.6 ABA78525.1 - 0.0086 15.7 2.7 0.014 15.0 0.8 2.2 2 1 0 2 2 2 1 AAA domain CobA_CobO_BtuR PF02572.15 ABA78525.1 - 0.0086 16.3 0.4 0.16 12.2 0.2 2.2 2 0 0 2 2 2 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_23 PF13476.6 ABA78525.1 - 0.0095 16.5 0.4 0.024 15.1 0.3 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA78525.1 - 0.016 15.1 0.6 0.052 13.4 0.1 2.0 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 ABA78525.1 - 0.039 13.3 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 ABA78525.1 - 0.067 12.9 0.0 0.098 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 ABA78525.1 - 0.069 12.1 0.4 0.7 8.8 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MukB PF04310.12 ABA78525.1 - 0.08 12.7 0.1 0.26 11.1 0.1 1.8 2 0 0 2 2 2 0 MukB N-terminal AAA_16 PF13191.6 ABA78525.1 - 0.085 13.2 0.7 0.2 12.0 0.3 1.9 2 1 0 2 2 1 0 AAA ATPase domain FliG_C PF01706.16 ABA78525.1 - 0.095 12.9 0.7 0.28 11.4 0.1 2.1 2 0 0 2 2 2 0 FliG C-terminal domain AAA_33 PF13671.6 ABA78525.1 - 0.12 12.6 0.0 0.35 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 ABA78525.1 - 0.13 12.2 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NTPase_1 PF03266.15 ABA78525.1 - 0.18 11.7 0.7 5.4 6.9 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 ABA78525.1 - 0.23 11.8 0.7 15 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.16 ABA78526.2 - 2.9e-31 108.6 47.0 2.9e-31 108.6 47.0 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA78527.1 - 3.2e-35 121.6 39.8 3.2e-35 121.6 39.8 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component PfkB PF00294.24 ABA78528.1 - 4.5e-45 154.3 0.0 5.5e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 ABA78528.1 - 0.0027 17.1 0.0 0.0081 15.6 0.0 1.6 1 1 1 2 2 2 1 Phosphomethylpyrimidine kinase adh_short_C2 PF13561.6 ABA78529.1 - 4.9e-66 222.6 8.1 5.5e-66 222.5 8.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78529.1 - 2.4e-60 203.4 5.1 2.9e-60 203.1 5.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78529.1 - 5e-15 55.9 4.6 6.4e-15 55.5 4.6 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA78529.1 - 1.1e-06 28.3 1.4 4.3e-06 26.4 1.4 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 ABA78529.1 - 0.0073 15.6 1.5 0.0073 15.6 1.5 1.6 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GDP_Man_Dehyd PF16363.5 ABA78529.1 - 0.012 15.1 0.1 0.12 11.8 0.0 2.1 2 1 0 2 2 2 0 GDP-mannose 4,6 dehydratase HHH_5 PF14520.6 ABA78529.1 - 0.1 13.2 2.2 0.99 10.1 0.5 2.9 2 1 0 2 2 2 0 Helix-hairpin-helix domain 3HCDH_N PF02737.18 ABA78529.1 - 2.7 7.8 5.7 0.59 10.0 2.5 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aldedh PF00171.22 ABA78530.1 - 5.4e-151 503.2 0.3 6e-151 503.1 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family MFS_4 PF06779.14 ABA78531.1 - 7.1e-55 186.8 51.5 8.9e-55 186.4 51.5 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1 PF07690.16 ABA78531.1 - 5.7e-13 48.5 74.4 7.3e-11 41.6 63.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2070 PF09843.9 ABA78531.1 - 0.012 14.0 0.2 0.012 14.0 0.2 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) DUF3772 PF12607.8 ABA78532.1 - 0.099 12.4 1.7 0.39 10.5 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3772) UPF0061 PF02696.14 ABA78533.1 - 4.6e-117 391.7 0.0 5.3e-117 391.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family Aminotran_1_2 PF00155.21 ABA78534.1 - 3.4e-62 210.7 0.0 3.9e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II SHMT PF00464.19 ABA78534.1 - 0.0074 14.9 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Met_gamma_lyase PF06838.11 ABA78534.1 - 0.039 12.5 0.0 0.067 11.7 0.0 1.3 1 0 0 1 1 1 0 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 ABA78534.1 - 0.13 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family ADH_N PF08240.12 ABA78535.1 - 4.2e-25 87.7 0.1 4.2e-24 84.5 0.0 2.1 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA78535.1 - 4.9e-19 68.6 0.2 8.1e-19 67.9 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 ABA78535.1 - 1.4e-08 34.5 0.1 2.5e-08 33.7 0.1 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 ABA78535.1 - 9.7e-06 26.7 0.2 0.0002 22.4 0.0 2.3 1 1 1 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 ABA78535.1 - 0.0018 17.6 1.6 0.0027 17.1 1.6 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 ABA78535.1 - 0.003 16.9 0.3 0.0045 16.3 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 ABA78535.1 - 0.0095 15.2 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA78535.1 - 0.014 14.2 0.4 0.019 13.7 0.4 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.6 ABA78535.1 - 0.065 12.5 0.3 0.093 12.0 0.3 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA78535.1 - 0.088 13.4 1.8 0.2 12.2 0.3 2.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA78535.1 - 0.16 11.3 3.6 0.22 10.9 3.6 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase p450 PF00067.22 ABA78536.1 - 2.2e-10 39.9 0.1 3.4e-10 39.3 0.1 1.2 1 0 0 1 1 1 1 Cytochrome P450 Trp_oprn_chp PF09534.10 ABA78537.1 - 0.0087 15.9 0.3 0.011 15.6 0.3 1.0 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Catalase PF00199.19 ABA78538.1 - 1.7e-174 580.4 0.0 2e-174 580.2 0.0 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 ABA78538.1 - 3.3e-20 72.1 0.0 6.9e-20 71.0 0.0 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive Catalase_C PF18011.1 ABA78538.1 - 2.6e-10 40.2 0.0 5.4e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain found in long catalases DJ-1_PfpI PF01965.24 ABA78538.1 - 0.0051 16.6 0.1 0.0095 15.7 0.1 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family Pur_DNA_glyco PF02245.16 ABA78540.1 - 3.3e-58 196.0 0.0 3.7e-58 195.8 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Trypan_PARP PF05887.11 ABA78541.1 - 1.9 8.4 18.0 2.1 8.4 18.0 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF883 PF05957.13 ABA78542.1 - 1.4e-08 35.2 24.4 0.00085 19.9 2.9 5.0 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF883) DUF3618 PF12277.8 ABA78542.1 - 1.2e-07 31.8 0.4 1.2e-07 31.8 0.4 5.4 5 1 0 5 5 5 1 Protein of unknown function (DUF3618) Apolipoprotein PF01442.18 ABA78542.1 - 0.00076 19.4 13.9 0.5 10.2 9.0 3.3 2 1 0 2 2 2 2 Apolipoprotein A1/A4/E domain YtxH PF12732.7 ABA78542.1 - 0.77 10.3 19.8 2.2 8.9 0.3 5.3 4 1 1 5 5 5 0 YtxH-like protein LEA_4 PF02987.16 ABA78542.1 - 1.8 8.7 0.0 1 9.5 0.3 4.0 3 1 1 4 4 4 0 Late embryogenesis abundant protein EspB PF05802.11 ABA78542.1 - 3.1 7.7 9.2 1.1 9.2 0.2 2.7 3 0 0 3 3 3 0 Enterobacterial EspB protein Phage_holin_3_6 PF07332.11 ABA78543.1 - 7.6e-29 100.0 11.7 8.6e-29 99.9 11.7 1.0 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF3995 PF13160.6 ABA78543.1 - 0.0056 17.0 6.1 0.0069 16.8 6.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3995) DUF973 PF06157.11 ABA78543.1 - 0.016 14.2 3.7 0.02 13.9 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF2207 PF09972.9 ABA78543.1 - 0.072 11.8 0.0 0.076 11.8 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Herpes_LMP1 PF05297.11 ABA78543.1 - 0.12 11.5 1.7 0.16 11.2 1.7 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) RseC_MucC PF04246.12 ABA78543.1 - 0.31 11.0 1.9 0.45 10.5 1.9 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF883 PF05957.13 ABA78544.1 - 6.7e-05 23.4 9.6 0.13 12.9 0.2 2.6 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) Pyrid_ox_like PF16242.5 ABA78545.2 - 3.5e-38 130.5 0.0 4e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 ABA78545.2 - 0.058 13.4 0.0 0.24 11.4 0.0 1.7 1 1 1 2 2 2 0 Pyridoxamine 5'-phosphate oxidase PsiE PF06146.12 ABA78547.2 - 2.1e-11 44.0 3.8 2.1e-11 44.0 3.8 2.2 2 0 0 2 2 2 1 Phosphate-starvation-inducible E IF-2B PF01008.17 ABA78548.1 - 8.4e-58 195.8 0.0 1e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HAP2-GCS1 PF10699.9 ABA78548.1 - 0.011 15.7 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Male gamete fusion factor FTR PF01913.18 ABA78548.1 - 0.018 15.0 0.0 0.058 13.3 0.0 1.9 2 0 0 2 2 2 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase DUF1178 PF06676.11 ABA78549.1 - 1.1e-52 178.4 0.0 1.3e-52 178.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1178) Zn-ribbon_8 PF09723.10 ABA78549.1 - 0.00011 22.2 0.0 0.00028 20.9 0.0 1.7 1 1 0 1 1 1 1 Zinc ribbon domain NUDIX PF00293.28 ABA78550.1 - 2.5e-08 34.0 0.1 3.1e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain GSHPx PF00255.19 ABA78551.1 - 2.1e-21 75.5 0.0 2.9e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 ABA78551.1 - 0.01 15.7 0.0 0.013 15.4 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA family Hist_deacetyl PF00850.19 ABA78552.2 - 5.2e-60 203.5 0.0 6.2e-60 203.3 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain B12-binding PF02310.19 ABA78552.2 - 0.096 12.7 0.0 17 5.5 0.0 2.5 2 0 0 2 2 2 0 B12 binding domain LigT_PEase PF02834.16 ABA78553.1 - 1.3e-24 86.2 2.4 2.4e-11 43.7 0.2 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 ABA78553.1 - 1.1e-15 57.9 0.0 1.4e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 ABA78553.1 - 0.00069 19.6 0.0 0.0017 18.3 0.0 1.5 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain NnrU PF07298.11 ABA78554.1 - 7.3e-37 126.9 8.9 8.6e-37 126.7 8.9 1.0 1 0 0 1 1 1 1 NnrU protein DUF373 PF04123.13 ABA78554.1 - 0.81 9.1 2.9 0.93 8.9 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Glycos_transf_N PF04413.16 ABA78555.1 - 2.9e-43 147.6 0.0 6.3e-43 146.5 0.0 1.5 2 0 0 2 2 2 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CCP_MauG PF03150.14 ABA78556.1 - 1.4e-49 168.6 0.0 6.9e-47 159.9 0.0 2.1 2 0 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.21 ABA78556.1 - 5.5e-14 53.1 0.0 4.2e-09 37.4 0.0 2.4 2 0 0 2 2 2 2 Cytochrome c Paired_CXXCH_1 PF09699.10 ABA78556.1 - 0.014 15.1 0.2 4.1 7.2 0.0 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_CBB3 PF13442.6 ABA78556.1 - 0.015 15.6 3.0 2.2 8.7 0.9 3.3 2 1 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 ABA78556.1 - 0.073 13.1 0.0 18 5.4 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Acetyltransf_6 PF13480.7 ABA78557.1 - 4.2e-10 39.9 3.1 4.5e-10 39.8 1.4 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain ATP-synt_DE PF00401.20 ABA78557.1 - 0.053 13.8 2.1 2.4 8.5 0.5 2.9 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FemAB PF02388.16 ABA78557.1 - 0.27 10.1 0.0 5.6 5.7 0.0 2.0 2 0 0 2 2 2 0 FemAB family SBP_bac_8 PF13416.6 ABA78558.1 - 4.9e-30 105.3 3.4 6.3e-30 105.0 3.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA78558.1 - 1.4e-16 60.7 1.1 2.7e-16 59.7 1.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA78558.1 - 1.4e-15 58.1 6.5 4.9e-15 56.3 6.5 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA78558.1 - 7.3e-07 29.2 0.0 0.013 15.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA78559.1 - 1.1e-15 57.9 13.5 1.1e-15 57.9 13.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component GMP_synt_C PF00958.22 ABA78559.1 - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 GMP synthase C terminal domain BPD_transp_1 PF00528.22 ABA78560.1 - 3.9e-10 39.8 28.9 2.1e-09 37.4 28.9 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA78561.2 - 4.1e-35 121.3 0.0 6e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA78561.2 - 1.2e-15 57.4 1.5 3.4e-15 56.0 0.2 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 ABA78561.2 - 4.3e-09 36.6 0.9 0.00012 22.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 ABA78561.2 - 0.00029 21.1 0.5 0.0026 18.0 0.0 2.7 3 0 0 3 3 3 1 TOBE domain SMC_N PF02463.19 ABA78561.2 - 0.00033 20.1 0.1 0.018 14.5 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA78561.2 - 0.00047 20.6 0.6 0.0015 19.0 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA78561.2 - 0.00082 19.7 1.1 0.009 16.3 1.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 ABA78561.2 - 0.0019 18.7 0.2 0.019 15.4 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 ABA78561.2 - 0.005 16.3 0.1 0.22 10.9 0.2 2.1 2 0 0 2 2 2 1 Bacterial TniB protein AAA_25 PF13481.6 ABA78561.2 - 0.0056 16.3 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 ABA78561.2 - 0.034 14.0 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 ABA78561.2 - 0.044 13.5 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 ABA78561.2 - 0.064 13.2 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain sCache_3_2 PF17203.4 ABA78561.2 - 0.065 13.4 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 1 0 Single cache domain 3 SbcCD_C PF13558.6 ABA78561.2 - 0.075 13.3 0.2 1.3 9.3 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 ABA78561.2 - 0.076 13.5 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA78561.2 - 0.08 12.9 0.5 0.29 11.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SUKH-4 PF14435.6 ABA78561.2 - 0.084 12.9 1.4 2.5 8.1 0.2 2.9 1 1 1 3 3 3 0 SUKH-4 immunity protein NACHT PF05729.12 ABA78561.2 - 0.11 12.4 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 ABA78561.2 - 0.12 12.6 0.7 0.55 10.5 0.2 2.1 2 0 0 2 2 2 0 AAA domain CysA_C_terminal PF17850.1 ABA78561.2 - 0.14 12.8 3.6 0.2 12.2 1.9 2.3 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AAA_24 PF13479.6 ABA78561.2 - 0.18 11.5 0.4 4.3 7.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Amidase PF01425.21 ABA78562.1 - 9.6e-86 288.5 0.0 1.2e-85 288.2 0.0 1.1 1 0 0 1 1 1 1 Amidase TonB_dep_Rec PF00593.24 ABA78563.1 - 8.4e-49 167.7 9.8 8.4e-49 167.7 9.8 1.6 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 ABA78563.1 - 9e-24 84.1 3.5 9e-24 84.1 3.5 1.7 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain Peripla_BP_2 PF01497.18 ABA78564.1 - 1.6e-22 80.2 0.0 2.3e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TetR_C_18 PF17923.1 ABA78564.1 - 0.0026 18.3 0.3 0.53 10.8 0.2 2.4 2 0 0 2 2 2 2 Tetracyclin repressor-like, C-terminal domain FecCD PF01032.18 ABA78565.1 - 7.7e-81 271.5 43.5 9.4e-81 271.2 43.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 ABA78566.1 - 7.5e-22 78.3 0.0 1.4e-21 77.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78566.1 - 9e-09 35.6 0.4 0.00032 20.6 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA78566.1 - 8.1e-05 22.2 0.0 0.24 10.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 ABA78566.1 - 0.00023 21.0 1.4 0.00034 20.4 0.2 1.7 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 ABA78566.1 - 0.0015 19.0 3.7 0.056 13.8 3.6 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA78566.1 - 0.0019 17.9 0.1 0.004 16.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA78566.1 - 0.016 15.7 0.0 0.023 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA78566.1 - 0.047 13.4 0.0 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 ABA78566.1 - 0.052 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA78566.1 - 0.2 11.6 0.4 3.6 7.5 0.2 2.2 2 0 0 2 2 2 0 NACHT domain CbiZ PF01955.18 ABA78567.1 - 1e-43 149.7 1.7 1.1e-43 149.5 1.7 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Response_reg PF00072.24 ABA78568.2 - 1.2e-24 86.7 0.0 2.3e-24 85.7 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 ABA78568.2 - 4.8e-21 75.4 0.0 8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA78568.2 - 2.3e-13 50.0 0.5 6e-13 48.6 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 ABA78568.2 - 0.033 14.1 0.0 0.075 13.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PseudoU_synth_2 PF00849.22 ABA78570.1 - 1e-31 110.2 0.0 1.5e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 ABA78570.1 - 0.00092 18.9 0.0 0.002 17.8 0.0 1.6 1 1 0 1 1 1 1 S4 domain Sigma70_r4 PF04545.16 ABA78571.1 - 4.1e-18 64.6 1.2 4.4e-16 58.1 0.6 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 ABA78571.1 - 2.4e-16 59.2 0.1 4.6e-16 58.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r1_2 PF00140.20 ABA78571.1 - 2.3e-08 33.9 0.1 5.5e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 HTH_11 PF08279.12 ABA78571.1 - 0.00075 19.4 0.2 0.029 14.3 0.1 2.5 2 0 0 2 2 2 1 HTH domain HTH_3 PF01381.22 ABA78571.1 - 0.00088 19.3 0.3 0.81 9.8 0.1 2.8 2 0 0 2 2 2 2 Helix-turn-helix HTH_19 PF12844.7 ABA78571.1 - 0.00098 19.1 0.3 0.43 10.6 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_10 PF04967.12 ABA78571.1 - 0.06 13.2 0.1 14 5.6 0.0 3.1 3 0 0 3 3 3 0 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 ABA78571.1 - 0.091 12.2 0.0 0.44 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 IF2_N PF04760.15 ABA78571.1 - 0.11 12.4 0.0 1.9 8.4 0.0 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region TrmB PF01978.19 ABA78571.1 - 0.12 12.3 0.1 10 6.1 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Methyltransf_11 PF08241.12 ABA78572.2 - 0.00014 22.4 0.0 0.0003 21.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA78572.2 - 0.00063 20.4 0.0 0.0012 19.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA78572.2 - 0.0038 17.1 0.0 0.005 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA78572.2 - 0.011 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RNase_II_C_S1 PF18614.1 ABA78572.2 - 0.019 14.9 4.5 6.1 6.9 0.1 3.4 3 0 0 3 3 3 0 RNase II-type exonuclease C-terminal S1 domain Methyltransf_25 PF13649.6 ABA78572.2 - 0.084 13.6 0.0 0.22 12.3 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_M3 PF01432.20 ABA78573.1 - 6.9e-35 121.2 0.8 2.9e-33 115.8 0.1 2.6 2 1 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 ABA78573.1 - 2.9e-18 65.9 0.3 6.6e-18 64.7 0.3 1.7 1 0 0 1 1 1 1 Oligopeptidase F Gluconate_2-dh3 PF13618.6 ABA78573.1 - 0.11 12.7 0.1 0.38 11.0 0.0 2.0 2 0 0 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 DNA_ligase_A_M PF01068.21 ABA78574.1 - 2.1e-26 92.8 0.0 3.3e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 ABA78574.1 - 6.4e-17 62.4 0.0 1e-16 61.8 0.0 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 ABA78574.1 - 9.2e-14 51.9 0.1 2.9e-13 50.2 0.1 1.9 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Lactamase_B PF00753.27 ABA78575.1 - 9.9e-05 22.4 5.3 0.017 15.1 4.9 2.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA78575.1 - 0.023 14.2 1.3 0.4 10.2 0.5 2.6 2 1 0 2 2 2 0 Beta-lactamase superfamily domain RMMBL PF07521.12 ABA78575.1 - 0.094 12.7 0.8 0.38 10.7 0.0 2.4 4 0 0 4 4 4 0 Zn-dependent metallo-hydrolase RNA specificity domain CP_ATPgrasp_2 PF14403.6 ABA78576.2 - 1.2e-163 544.5 0.0 2.1e-163 543.7 0.0 1.4 2 0 0 2 2 2 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 ABA78576.2 - 1.6e-150 500.8 0.0 2.2e-150 500.3 0.0 1.2 1 0 0 1 1 1 1 A circularly permuted ATPgrasp ATPgrasp_ST PF14397.6 ABA78576.2 - 0.1 11.8 0.0 0.31 10.2 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Alpha-E PF04168.12 ABA78577.1 - 3.8e-90 302.6 3.2 4.3e-90 302.5 3.2 1.0 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. Shikimate_DH PF01488.20 ABA78577.1 - 0.051 13.6 0.0 0.16 12.1 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Transglut_core PF01841.19 ABA78578.1 - 5e-29 101.0 0.6 8e-29 100.4 0.6 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.10 ABA78578.1 - 2.2e-16 60.5 0.0 3.9e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region Transglut_core3 PF13471.6 ABA78578.1 - 0.0072 16.2 4.1 0.017 15.0 4.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like superfamily Proteasome PF00227.26 ABA78579.1 - 3.8e-06 26.5 0.0 1.6e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 Proteasome subunit Hydrolase_4 PF12146.8 ABA78580.1 - 3.3e-38 131.3 0.0 3.9e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 ABA78580.1 - 3.5e-14 53.9 13.8 3.5e-14 53.9 13.8 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA78580.1 - 2.9e-13 50.1 0.0 2.1e-12 47.3 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.20 ABA78580.1 - 0.094 12.8 0.2 0.48 10.5 0.0 1.9 2 0 0 2 2 2 0 Thioesterase domain SCP2 PF02036.17 ABA78581.1 - 6.8e-15 55.4 0.1 7.6e-15 55.2 0.1 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family SHS2_Rpb7-N PF03876.17 ABA78581.1 - 0.16 12.4 0.1 0.21 12.0 0.1 1.2 1 0 0 1 1 1 0 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 TPR_2 PF07719.17 ABA78582.1 - 1.8e-10 40.1 0.1 0.013 15.5 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 ABA78582.1 - 8.7e-10 38.0 0.0 0.00058 19.6 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 ABA78582.1 - 2.9e-07 30.8 11.9 0.002 18.8 0.8 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 ABA78582.1 - 5.1e-06 26.9 3.5 0.00036 21.0 0.1 3.2 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 ABA78582.1 - 1.7e-05 24.9 11.4 0.0032 17.6 1.5 3.4 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 ABA78582.1 - 5.2e-05 23.8 11.6 0.0036 17.9 0.9 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 ABA78582.1 - 0.00011 22.3 0.1 0.23 11.9 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 ABA78582.1 - 0.00059 20.1 1.7 0.039 14.2 0.0 2.8 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 ABA78582.1 - 0.0006 19.8 0.0 1.7 9.1 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 ABA78582.1 - 0.0014 18.2 0.6 0.44 10.3 0.0 2.7 2 0 0 2 2 2 2 TPR repeat TPR_6 PF13174.6 ABA78582.1 - 0.12 13.1 7.2 2.8 8.8 0.0 3.4 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_7 PF13176.6 ABA78582.1 - 0.12 12.5 0.4 15 5.9 0.0 3.0 3 1 0 3 3 3 0 Tetratricopeptide repeat Helicase_C PF00271.31 ABA78583.2 - 5.1e-08 33.3 0.0 9.6e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain S4 PF01479.25 ABA78584.1 - 9.9e-11 41.2 0.0 1.9e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 ABA78584.1 - 0.029 14.2 0.0 0.039 13.8 0.0 1.1 1 0 0 1 1 1 0 S4 domain DUF3470 PF11953.8 ABA78585.1 - 1.1e-15 57.2 0.0 1.6e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3470) Fer4 PF00037.27 ABA78585.1 - 1.3e-09 37.4 23.4 1.4e-07 31.0 5.9 3.1 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 ABA78585.1 - 1.4e-07 31.5 24.5 1.9e-05 24.7 13.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA78585.1 - 1.6e-07 32.1 7.8 4.5e-05 24.3 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 ABA78585.1 - 2.3e-07 30.9 11.2 0.00085 19.4 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA78585.1 - 1.4e-06 28.3 25.7 0.0004 20.4 15.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA78585.1 - 2.7e-06 27.1 14.8 0.0044 17.0 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 ABA78585.1 - 5.5e-06 26.9 17.1 4.8e-05 23.9 17.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA78585.1 - 6.7e-06 26.0 19.2 0.00056 19.9 5.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 ABA78585.1 - 0.00015 22.0 15.8 0.0011 19.3 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 ABA78585.1 - 0.00032 21.1 8.1 0.0066 16.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA78585.1 - 0.0028 18.2 12.6 0.03 14.9 2.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 ABA78585.1 - 2.9 9.0 20.3 3.6 8.7 7.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 ABA78585.1 - 8.7 7.0 21.0 4.2 8.0 5.7 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CarD_CdnL_TRCF PF02559.16 ABA78586.1 - 1.3e-18 67.5 0.0 1.9e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 CarD-like/TRCF domain CobS PF02654.15 ABA78587.2 - 6.3e-49 167.0 26.1 7.1e-49 166.8 26.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DBI_PRT PF02277.17 ABA78588.1 - 4.5e-114 381.1 18.7 5.1e-114 380.9 18.7 1.0 1 0 0 1 1 1 1 Phosphoribosyltransferase TamB PF04357.13 ABA78588.1 - 0.044 13.0 0.0 0.057 12.6 0.0 1.1 1 0 0 1 1 1 0 TamB, inner membrane protein subunit of TAM complex IstB_IS21 PF01695.17 ABA78588.1 - 0.12 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Na_H_Exchanger PF00999.21 ABA78589.2 - 3.5e-52 177.5 44.4 4.7e-52 177.0 44.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 ABA78589.2 - 7.1e-24 84.3 0.6 1.4e-23 83.3 0.6 1.5 1 0 0 1 1 1 1 TrkA-N domain PilP PF04351.13 ABA78590.1 - 0.023 14.7 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Pilus assembly protein, PilP tRNA_anti-like PF12869.7 ABA78590.1 - 0.35 10.5 0.9 1.3 8.7 0.3 2.2 2 0 0 2 2 2 0 tRNA_anti-like SIMPL PF04402.14 ABA78591.2 - 2.1e-52 178.5 0.1 2.3e-52 178.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Cys_Met_Meta_PP PF01053.20 ABA78592.1 - 5e-126 420.3 0.0 5.7e-126 420.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 ABA78592.1 - 2.9e-11 43.3 0.1 4.2e-11 42.8 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 ABA78592.1 - 3e-05 23.4 0.0 5.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 ABA78592.1 - 0.00035 20.0 0.0 0.0013 18.0 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 ABA78592.1 - 0.0069 15.4 0.0 0.013 14.5 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class-V PP2C PF00481.21 ABA78592.1 - 0.21 11.2 0.1 0.33 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C Response_reg PF00072.24 ABA78594.1 - 2.4e-23 82.4 0.0 2.7e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheR PF01739.18 ABA78595.1 - 3.1e-70 235.7 0.0 3.8e-70 235.4 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 ABA78595.1 - 4.2e-13 48.8 0.0 6.6e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 ABA78595.1 - 0.0028 18.3 0.0 0.018 15.7 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA78595.1 - 0.013 16.2 0.0 0.12 13.1 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 ABA78595.1 - 0.035 13.9 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 ABA78595.1 - 0.083 13.5 0.0 0.23 12.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.6 ABA78595.1 - 0.11 12.3 0.0 0.79 9.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain CheW PF01584.19 ABA78596.1 - 3.9e-36 123.7 2.1 4.3e-36 123.6 2.1 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 ABA78597.1 - 1.8e-21 76.2 1.3 3.2e-21 75.4 1.3 1.4 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 ABA78597.1 - 8.3e-19 67.6 0.9 8.3e-19 67.6 0.9 2.1 2 0 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 ABA78597.1 - 2.9e-17 63.2 0.0 6.9e-17 62.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 ABA78597.1 - 3.1e-14 53.1 0.5 8.3e-14 51.7 0.2 2.0 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 ABA78597.1 - 0.049 13.5 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA78598.1 - 9.4e-28 96.6 0.0 1e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain STAS_2 PF13466.6 ABA78599.1 - 1.8e-14 53.8 1.6 2e-14 53.7 1.6 1.0 1 0 0 1 1 1 1 STAS domain CheD PF03975.13 ABA78600.1 - 4.9e-28 97.4 0.1 8.4e-28 96.6 0.1 1.3 1 0 0 1 1 1 1 CheD chemotactic sensory transduction MCPsignal PF00015.21 ABA78601.1 - 6.4e-50 169.3 15.8 6.4e-50 169.3 15.8 2.9 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Chrome_Resist PF09828.9 ABA78601.1 - 0.039 14.4 1.6 2.5 8.5 0.1 2.8 2 0 0 2 2 2 0 Chromate resistance exported protein PAS_4 PF08448.10 ABA78601.1 - 0.058 13.7 1.0 0.57 10.4 0.0 3.3 4 0 0 4 4 4 0 PAS fold DUF3450 PF11932.8 ABA78601.1 - 0.16 11.2 9.5 0.28 10.4 1.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Laminin_II PF06009.12 ABA78601.1 - 0.47 10.5 12.5 1.1 9.2 2.4 2.7 2 0 0 2 2 2 0 Laminin Domain II MCPsignal PF00015.21 ABA78603.1 - 9e-30 103.7 21.2 9e-30 103.7 21.2 5.4 3 2 3 6 6 6 1 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 ABA78603.1 - 1.6e-12 47.4 2.6 1.6e-12 47.4 2.6 3.3 4 0 0 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 ABA78603.1 - 3.7e-08 33.6 0.1 3.7e-08 33.6 0.1 3.5 4 0 0 4 4 4 1 HAMP domain Mlf1IP PF10248.9 ABA78603.1 - 0.12 12.3 1.0 0.28 11.2 1.0 1.5 1 0 0 1 1 1 0 Myelodysplasia-myeloid leukemia factor 1-interacting protein DUF948 PF06103.11 ABA78603.1 - 1.5 9.1 19.2 3.2 8.1 0.3 4.4 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.10 ABA78603.1 - 6.8 6.9 10.1 2.8 8.1 0.7 3.4 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Response_reg PF00072.24 ABA78604.1 - 6e-26 90.8 0.0 6.7e-26 90.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain LRR_9 PF14580.6 ABA78604.1 - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Leucine-rich repeat STAS_2 PF13466.6 ABA78605.1 - 2.8e-08 34.0 1.8 3.4e-08 33.7 1.8 1.1 1 0 0 1 1 1 1 STAS domain DUF3416 PF11896.8 ABA78606.2 - 7.4e-48 163.2 3.1 1.1e-47 162.7 3.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3416) Alpha-amylase PF00128.24 ABA78606.2 - 5.3e-11 42.7 0.0 4.9e-10 39.5 0.0 2.2 1 1 0 1 1 1 1 Alpha amylase, catalytic domain GHL6 PF14871.6 ABA78606.2 - 0.0004 20.5 0.0 0.00084 19.5 0.0 1.5 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 Malt_amylase_C PF16657.5 ABA78606.2 - 0.0035 17.4 0.0 0.0073 16.4 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Alpha-amylase PF00128.24 ABA78607.1 - 2.7e-74 250.7 0.0 6.8e-74 249.4 0.0 1.6 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 ABA78607.1 - 1.8e-28 98.4 0.0 3.5e-28 97.5 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 ABA78607.1 - 4e-08 33.5 0.2 3.8e-07 30.3 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Mak_N_cap PF18085.1 ABA78607.1 - 5.3e-05 24.2 0.2 5.3e-05 24.2 0.2 2.8 3 0 0 3 3 3 1 Maltokinase N-terminal cap domain hDGE_amylase PF14701.6 ABA78607.1 - 0.19 10.8 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain CBM_48 PF02922.18 ABA78608.1 - 3.2e-25 88.3 0.0 5.5e-21 74.7 0.0 2.5 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase_C PF02806.18 ABA78608.1 - 5e-23 81.4 0.0 1e-22 80.4 0.0 1.6 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 ABA78608.1 - 1.3e-07 31.6 0.0 2.8e-05 23.9 0.0 2.2 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 ABA78608.1 - 0.14 12.3 0.0 0.51 10.5 0.0 2.0 2 0 0 2 2 2 0 Maltogenic Amylase, C-terminal domain CBM_48 PF02922.18 ABA78609.1 - 1.3e-19 70.3 0.0 3.2e-19 69.1 0.0 1.7 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 ABA78609.1 - 3.7e-12 46.4 0.2 3.2e-07 30.3 0.0 3.0 2 1 1 3 3 3 2 Alpha amylase, catalytic domain DUF3459 PF11941.8 ABA78609.1 - 0.00015 22.0 1.6 0.0012 19.1 0.5 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Alpha-amylase PF00128.24 ABA78610.1 - 3.5e-21 76.1 0.0 2.2e-14 53.8 0.0 3.1 2 1 1 3 3 3 3 Alpha amylase, catalytic domain DUF3459 PF11941.8 ABA78610.1 - 4.1e-17 62.3 0.2 1.1e-16 60.9 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) CBM_48 PF02922.18 ABA78610.1 - 0.0089 16.4 0.0 0.033 14.5 0.0 2.0 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Glyco_hydro_77 PF02446.17 ABA78611.1 - 4.2e-108 362.2 0.0 5.4e-108 361.8 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Alpha-amylase PF00128.24 ABA78612.1 - 6.9e-18 65.3 0.0 2.1e-12 47.3 0.0 3.2 3 0 0 3 3 3 3 Alpha amylase, catalytic domain DUF3459 PF11941.8 ABA78612.1 - 0.0027 18.0 0.1 0.018 15.3 0.1 2.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 ABA78612.1 - 0.074 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain adh_short PF00106.25 ABA78613.1 - 2.8e-25 88.9 0.0 3.3e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA78613.1 - 2.5e-19 69.8 0.0 2.9e-19 69.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA78613.1 - 1.1e-06 28.6 0.2 1.8e-06 28.0 0.0 1.3 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 ABA78613.1 - 0.00053 19.5 0.0 0.011 15.2 0.0 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA78613.1 - 0.19 10.8 0.0 0.37 9.9 0.0 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain GATase_7 PF13537.6 ABA78614.1 - 7e-20 71.2 0.0 1.3e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 ABA78614.1 - 7.2e-18 65.1 0.0 1.4e-17 64.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 ABA78614.1 - 2.9e-05 23.6 0.0 5e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 ABA78614.1 - 0.00019 20.4 0.0 0.00034 19.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Colicin_V PF02674.16 ABA78615.1 - 1.5e-26 93.1 14.6 1.8e-26 92.8 14.6 1.1 1 0 0 1 1 1 1 Colicin V production protein Oxidored_q2 PF00420.24 ABA78615.1 - 1.6 8.4 10.5 0.66 9.6 7.9 1.6 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SseC PF04888.12 ABA78615.1 - 4.5 6.8 12.0 8 6.0 12.0 1.4 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family ATPase PF06745.13 ABA78616.1 - 3.3e-17 62.6 0.1 4.7e-11 42.5 0.0 2.1 1 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 ABA78616.1 - 3.2e-15 56.2 1.5 1.6e-14 54.0 1.0 2.3 2 1 0 2 2 2 1 AAA domain Rubredoxin_2 PF18073.1 ABA78616.1 - 2.2e-11 43.2 4.3 3.4e-11 42.6 4.3 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain ChlI PF13541.6 ABA78616.1 - 1.6e-08 34.4 0.1 3.9e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase DnaB_C PF03796.15 ABA78616.1 - 1.1e-05 24.9 0.0 3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 ABA78616.1 - 6.3e-05 23.4 0.1 0.00013 22.4 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain Lon_C PF05362.13 ABA78616.1 - 8.9e-05 22.1 0.5 0.00018 21.1 0.0 1.6 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain Rad51 PF08423.11 ABA78616.1 - 0.0012 18.2 0.1 0.029 13.6 0.1 2.4 1 1 0 1 1 1 1 Rad51 AAA PF00004.29 ABA78616.1 - 0.0031 17.9 0.0 0.006 17.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 ABA78616.1 - 0.0049 16.6 1.0 0.01 15.6 1.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 ABA78616.1 - 0.0077 16.0 0.0 0.059 13.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA78616.1 - 0.0077 16.5 0.0 0.015 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 ABA78616.1 - 0.017 15.0 0.2 0.11 12.4 0.0 2.3 2 1 1 3 3 3 0 NTPase PAXNEB PF05625.11 ABA78616.1 - 0.019 14.1 0.1 0.032 13.4 0.1 1.3 1 0 0 1 1 1 0 PAXNEB protein RecA PF00154.21 ABA78616.1 - 0.035 13.6 0.1 0.067 12.6 0.1 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NACHT PF05729.12 ABA78616.1 - 0.16 11.8 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 ABA78616.1 - 0.21 10.8 0.1 0.37 10.0 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin PqiA PF04403.13 ABA78617.1 - 3.9e-16 59.3 14.6 4.8e-16 59.0 14.6 1.0 1 0 0 1 1 1 1 Paraquat-inducible protein A ABC_tran PF00005.27 ABA78618.1 - 2.1e-30 106.0 0.0 3e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78618.1 - 2.6e-09 37.3 0.2 0.00037 20.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA78618.1 - 0.0016 18.8 0.1 0.0023 18.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA78618.1 - 0.0017 18.0 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 ABA78618.1 - 0.0028 16.8 0.0 0.0049 16.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein SMC_N PF02463.19 ABA78618.1 - 0.0055 16.2 0.0 0.42 10.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.7 ABA78618.1 - 0.0072 15.3 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.6 ABA78618.1 - 0.013 15.8 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 ABA78618.1 - 0.026 14.8 0.2 0.076 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA78618.1 - 0.039 13.3 0.0 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 ABA78618.1 - 0.058 13.1 0.0 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 ABA78618.1 - 0.073 13.0 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 ABA78618.1 - 0.088 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 ABA78618.1 - 0.091 12.5 0.0 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 ABA78618.1 - 0.14 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_28 PF13521.6 ABA78618.1 - 0.14 12.4 0.0 0.67 10.2 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_15 PF13175.6 ABA78618.1 - 0.24 11.0 0.0 16 5.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MlaE PF02405.16 ABA78619.1 - 9.5e-72 241.1 17.1 9.5e-72 241.1 17.1 1.6 2 0 0 2 2 2 1 Permease MlaE Spond_N PF06468.13 ABA78619.1 - 0.19 11.9 0.0 0.28 11.3 0.0 1.2 1 0 0 1 1 1 0 Spondin_N Ala_racemase_N PF01168.20 ABA78620.1 - 2.2e-48 164.8 0.0 2.8e-48 164.5 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 ABA78620.1 - 3.4e-35 120.5 0.0 5.1e-35 120.0 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain adh_short_C2 PF13561.6 ABA78621.1 - 2.4e-67 226.9 9.7 2.7e-67 226.7 9.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78621.1 - 9.5e-62 207.9 4.2 1.1e-61 207.7 4.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78621.1 - 7.5e-19 68.3 2.9 1.1e-18 67.7 2.9 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 ABA78621.1 - 4.5e-05 23.4 3.5 6.6e-05 22.9 3.5 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 ABA78621.1 - 6.3e-05 22.5 0.4 0.00021 20.8 0.4 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 ABA78621.1 - 0.0047 16.3 0.1 0.011 15.0 0.1 1.7 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.17 ABA78621.1 - 0.01 16.4 1.9 1.7 9.3 0.6 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HEM4 PF02602.15 ABA78621.1 - 0.017 14.5 3.0 1.2 8.4 0.3 2.2 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD GDP_Man_Dehyd PF16363.5 ABA78621.1 - 0.15 11.4 0.0 0.3 10.4 0.0 1.6 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase 3HCDH_N PF02737.18 ABA78621.1 - 0.34 10.8 2.8 1.4 8.8 0.5 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 ABA78621.1 - 0.95 9.0 3.4 0.37 10.3 0.3 1.9 2 1 1 3 3 3 0 NmrA-like family PP-binding PF00550.25 ABA78622.1 - 2.1e-14 53.6 0.3 2.3e-14 53.5 0.3 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 ABA78622.1 - 0.00014 22.1 0.7 0.00017 21.7 0.7 1.2 1 1 0 1 1 1 1 Acyl-carrier Ribosomal_L12_N PF16320.5 ABA78622.1 - 0.0022 17.7 0.0 0.0051 16.5 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein L7/L12 dimerisation domain DUF1493 PF07377.12 ABA78622.1 - 0.017 15.6 0.3 0.024 15.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1493) ketoacyl-synt PF00109.26 ABA78623.1 - 8.8e-63 212.2 1.1 8.8e-63 212.2 1.1 1.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 ABA78623.1 - 1e-33 115.8 0.3 1.8e-33 115.1 0.3 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 ABA78623.1 - 1.8e-06 27.5 0.2 6.7e-06 25.7 0.1 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain KAsynt_C_assoc PF16197.5 ABA78623.1 - 0.033 14.7 0.0 0.11 13.0 0.0 1.9 2 0 0 2 2 2 0 Ketoacyl-synthetase C-terminal extension ACP_syn_III PF08545.10 ABA78623.1 - 0.72 9.8 9.2 4 7.4 0.0 3.7 4 0 0 4 4 4 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YceG PF02618.16 ABA78624.2 - 8.5e-85 284.6 0.0 1.3e-84 284.1 0.0 1.2 1 0 0 1 1 1 1 YceG-like family HEPN PF05168.14 ABA78625.1 - 0.029 14.5 0.6 0.038 14.1 0.6 1.2 1 0 0 1 1 1 0 HEPN domain SHNi-TPR PF10516.9 ABA78625.1 - 0.036 13.5 1.6 0.54 9.8 0.3 2.4 2 0 0 2 2 2 0 SHNi-TPR DUF3346 PF11826.8 ABA78625.1 - 0.12 12.1 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3346) Terminase_6 PF03237.15 ABA78626.2 - 1.7e-20 73.6 0.0 4.3e-20 72.3 0.0 1.6 1 1 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 ABA78626.2 - 4.3e-11 43.1 0.0 6.5e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Terminase RNaseH-like domain PRP8_domainIV PF12134.8 ABA78626.2 - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 PRP8 domain IV core Phage_portal PF04860.12 ABA78627.1 - 4.1e-81 272.6 0.0 4.6e-81 272.4 0.0 1.0 1 0 0 1 1 1 1 Phage portal protein Peptidase_S78 PF04586.17 ABA78629.1 - 1e-29 103.8 0.0 1.3e-29 103.5 0.0 1.1 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_capsid PF05065.13 ABA78630.1 - 3e-83 279.4 0.0 3.8e-83 279.0 0.0 1.1 1 0 0 1 1 1 1 Phage capsid family Phage_connect_1 PF05135.13 ABA78631.1 - 0.00015 22.2 0.0 0.029 14.9 0.0 2.2 2 0 0 2 2 2 2 Phage gp6-like head-tail connector protein Phage_H_T_join PF05521.11 ABA78632.1 - 4.7e-14 52.7 0.0 5.2e-14 52.5 0.0 1.0 1 0 0 1 1 1 1 Phage head-tail joining protein DUF3168 PF11367.8 ABA78633.1 - 1.4e-20 73.6 0.4 1.9e-20 73.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) Phage_tail_2 PF06199.11 ABA78634.1 - 3.3e-45 153.5 0.1 3.7e-45 153.3 0.1 1.0 1 0 0 1 1 1 1 Phage tail tube protein Phage_TAC_6 PF09550.10 ABA78635.1 - 5.4e-23 81.2 6.3 5.4e-23 81.2 6.3 2.5 3 0 0 3 3 3 1 Phage tail assembly chaperone protein, TAC Phage_TAC_11 PF11836.8 ABA78635.1 - 1.9e-22 79.2 4.7 1.9e-22 79.2 4.7 2.0 2 1 0 2 2 2 1 Phage tail tube protein, GTA-gp10 ABC_tran_CTD PF16326.5 ABA78636.2 - 0.14 12.4 0.1 0.22 11.8 0.1 1.3 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF2460 PF09343.10 ABA78637.1 - 1.6e-86 288.9 0.0 1.8e-86 288.8 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 2217 (DUF2460) DUF2163 PF09931.9 ABA78638.1 - 3e-65 219.4 1.7 4.6e-65 218.8 1.7 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2163) Phage_BR0599 PF09356.10 ABA78638.1 - 9.7e-28 96.3 0.0 1.6e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Phage conserved hypothetical protein BR0599 GTA_TIM PF13547.6 ABA78640.1 - 1.8e-138 460.9 1.7 2.4e-138 460.5 1.7 1.2 1 0 0 1 1 1 1 GTA TIM-barrel-like domain Phage-tail_3 PF13550.6 ABA78640.1 - 7.4e-40 136.5 5.1 1.8e-39 135.2 5.1 1.7 1 0 0 1 1 1 1 Putative phage tail protein Gly-zipper_Omp PF13488.6 ABA78640.1 - 0.0086 16.1 13.3 0.028 14.4 13.3 1.9 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_YMGG PF13441.6 ABA78640.1 - 0.41 10.4 13.9 0.89 9.3 10.1 2.9 2 0 0 2 2 2 0 YMGG-like Gly-zipper SATase_N PF06426.14 ABA78642.1 - 1.4e-35 121.8 0.0 1.9e-35 121.4 0.0 1.2 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep PF00132.24 ABA78642.1 - 3.1e-09 36.2 11.1 7.9e-08 31.7 2.8 2.8 2 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA78642.1 - 0.017 14.9 3.1 0.017 14.9 3.1 2.5 2 1 1 3 3 2 0 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 ABA78642.1 - 0.095 13.0 2.0 0.17 12.2 2.0 1.4 1 0 0 1 1 1 0 Polymer-forming cytoskeletal 2-oxoacid_dh PF00198.23 ABA78643.1 - 9.6e-80 267.4 0.1 1.2e-79 267.0 0.1 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 ABA78643.1 - 8e-20 70.5 1.1 1.7e-19 69.4 0.7 1.8 1 1 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 ABA78643.1 - 7.2e-19 67.8 1.4 1.6e-18 66.7 0.5 2.2 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 ABA78643.1 - 3.9e-06 26.6 0.0 0.00021 21.0 0.0 2.9 2 0 0 2 2 2 1 Biotin-lipoyl like QRPTase_N PF02749.16 ABA78643.1 - 0.055 13.5 0.0 0.21 11.7 0.0 2.0 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain DUF3597 PF12200.8 ABA78643.1 - 2.3 8.8 11.7 1.8 9.1 1.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3597) Transket_pyr PF02779.24 ABA78644.1 - 2.9e-49 167.1 0.1 4e-49 166.7 0.1 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 ABA78644.1 - 1.8e-42 144.2 0.1 3.6e-42 143.1 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Biotin_lipoyl PF00364.22 ABA78644.1 - 3.7e-21 74.7 3.0 4.2e-21 74.6 1.5 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 ABA78644.1 - 2.8e-07 30.3 0.0 9e-07 28.6 0.0 1.9 1 1 0 1 1 1 1 Biotin-lipoyl like PFOR_II PF17147.4 ABA78644.1 - 8.9e-05 22.7 0.0 0.00023 21.4 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II RnfC_N PF13375.6 ABA78644.1 - 0.0037 17.2 0.1 0.0083 16.1 0.1 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.22 ABA78644.1 - 0.013 15.7 0.0 0.31 11.3 0.0 2.8 3 0 0 3 3 3 0 Peptidase family M23 QRPTase_N PF02749.16 ABA78644.1 - 0.072 13.1 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain E1_dh PF00676.20 ABA78645.1 - 1.3e-103 346.1 0.2 1.5e-103 345.9 0.2 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 ABA78645.1 - 7.3e-05 22.6 3.3 0.00015 21.6 1.2 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 ABA78645.1 - 0.00023 20.5 0.0 0.00032 20.0 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 ABA78645.1 - 0.014 14.4 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain Trigger_C PF05698.14 ABA78645.1 - 0.026 14.5 0.2 0.043 13.8 0.2 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus DivIC PF04977.15 ABA78646.1 - 1.7e-12 46.9 0.5 2e-12 46.7 0.5 1.1 1 0 0 1 1 1 1 Septum formation initiator DUF4164 PF13747.6 ABA78646.1 - 0.0045 17.2 4.9 0.0068 16.7 4.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4164) DeoC PF01791.9 ABA78647.1 - 2.8e-30 105.7 0.7 3.3e-30 105.4 0.7 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PGK PF00162.19 ABA78648.1 - 9.5e-145 482.3 0.6 1.1e-144 482.1 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Pro_isomerase PF00160.21 ABA78649.1 - 1.1e-44 152.5 0.0 1.3e-44 152.3 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.21 ABA78650.1 - 1.2e-44 152.3 0.0 1.4e-44 152.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD tRNA-synt_1b PF00579.25 ABA78651.1 - 1.6e-73 247.6 0.0 2.1e-73 247.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) TyrRSs_C PF16714.5 ABA78651.1 - 0.00067 19.5 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Tyrosyl-tRNA synthetase C-terminal domain S4 PF01479.25 ABA78651.1 - 0.00071 19.2 0.0 0.0042 16.8 0.0 2.1 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.6 ABA78651.1 - 0.0052 16.6 0.1 0.014 15.2 0.1 1.7 1 0 0 1 1 1 1 S4 domain Acetyltransf_6 PF13480.7 ABA78651.1 - 0.068 13.3 0.1 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain AnmK PF03702.14 ABA78652.1 - 6.8e-69 232.7 1.8 1.4e-68 231.7 1.8 1.4 1 1 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase FGGY_C PF02782.16 ABA78652.1 - 0.026 14.3 0.6 0.045 13.5 0.2 1.6 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain Cupin_5 PF06172.11 ABA78653.1 - 1.4e-45 154.9 0.0 1.6e-45 154.7 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily (DUF985) Enolase_C PF00113.22 ABA78655.1 - 1.5e-129 431.5 0.1 2e-129 431.1 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 ABA78655.1 - 5.5e-60 201.3 0.1 9.8e-60 200.5 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 ABA78655.1 - 2e-06 27.5 0.0 3.1e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like EamA PF00892.20 ABA78656.1 - 4.6e-18 65.7 31.9 8.6e-10 38.9 10.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family FUR PF01475.19 ABA78657.1 - 7.4e-39 132.6 0.0 8.4e-39 132.4 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 ABA78657.1 - 0.00065 19.2 0.0 0.055 12.9 0.0 2.1 2 0 0 2 2 2 2 Firmicute plasmid replication protein (RepL) HTH_29 PF13551.6 ABA78657.1 - 0.0069 16.4 0.2 0.027 14.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_20 PF12840.7 ABA78657.1 - 0.012 15.6 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 ABA78657.1 - 0.059 13.2 1.9 0.21 11.4 0.0 2.7 3 1 0 3 3 3 0 Homeodomain-like domain Ribonuc_red_lgC PF02867.15 ABA78658.1 - 6.7e-119 397.8 0.0 2.6e-103 346.4 0.0 2.3 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_2_N PF08471.10 ABA78658.1 - 7.2e-42 141.6 0.1 1.3e-41 140.7 0.1 1.5 1 0 0 1 1 1 1 Class II vitamin B12-dependent ribonucleotide reductase Transcrip_reg PF01709.20 ABA78658.1 - 7.7e-05 22.2 0.1 0.00014 21.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator RuvA_C PF07499.13 ABA78658.1 - 0.00049 20.5 0.0 1.3 9.6 0.1 3.9 3 0 0 3 3 3 1 RuvA, C-terminal domain Ribonuc_red_lgN PF00317.21 ABA78658.1 - 0.023 14.7 0.0 0.079 13.0 0.0 1.9 1 0 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain DNA_RNApol_7kD PF03604.13 ABA78658.1 - 2 8.2 4.9 4.6 7.0 4.9 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Hydrolase_2 PF07486.12 ABA78659.1 - 6.1e-18 65.6 0.0 9.7e-18 64.9 0.0 1.3 1 1 0 1 1 1 1 Cell Wall Hydrolase LPAM_2 PF13627.6 ABA78659.1 - 0.27 11.1 5.2 0.51 10.3 5.2 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site QRPTase_C PF01729.19 ABA78662.1 - 4.4e-16 59.1 0.1 6.1e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 ABA78662.1 - 1.1e-15 57.4 0.1 2.2e-15 56.5 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain UVR PF02151.19 ABA78662.1 - 0.049 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 UvrB/uvrC motif SIS PF01380.22 ABA78663.1 - 5.4e-49 165.4 0.1 4.5e-24 84.8 0.1 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 ABA78663.1 - 1.9e-20 73.4 0.2 4.6e-20 72.2 0.2 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 ABA78663.1 - 4.9e-15 55.5 0.0 8.2e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 ABA78663.1 - 0.038 12.9 0.0 0.074 11.9 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II SEO_C PF14577.6 ABA78663.1 - 0.25 10.7 0.0 0.4 10.1 0.0 1.2 1 0 0 1 1 1 0 Sieve element occlusion C-terminus DUF1707 PF08044.11 ABA78663.1 - 0.71 10.0 6.1 1 9.5 1.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) Hexapep PF00132.24 ABA78664.1 - 1.5e-24 84.8 5.0 6e-06 25.8 0.1 4.5 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 ABA78664.1 - 1.9e-20 73.9 8.0 4e-20 72.8 8.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 ABA78664.1 - 9e-10 38.5 0.0 1.2e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 ABA78664.1 - 3.5e-08 33.5 0.4 3.5e-08 33.5 0.4 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 ABA78664.1 - 4.7e-06 26.2 5.8 0.016 14.9 0.0 4.7 6 0 0 6 6 6 2 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.19 ABA78664.1 - 0.002 18.1 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase DUF2064 PF09837.9 ABA78664.1 - 0.004 17.0 0.2 0.011 15.5 0.2 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Glyco_tranf_2_3 PF13641.6 ABA78664.1 - 0.0068 16.3 0.8 0.013 15.4 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Pirin PF02678.16 ABA78664.1 - 0.016 15.2 0.2 0.033 14.2 0.2 1.5 1 0 0 1 1 1 0 Pirin CofC PF01983.16 ABA78664.1 - 0.031 13.4 0.0 0.05 12.8 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like Radical_SAM PF04055.21 ABA78664.1 - 0.15 12.4 0.1 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 Radical SAM superfamily HAD_2 PF13419.6 ABA78665.1 - 1.4e-24 87.1 0.0 1.9e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA78665.1 - 2.3e-18 67.3 0.4 7.7e-18 65.5 0.4 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA78665.1 - 2.3e-13 51.0 0.6 3.2e-13 50.5 0.5 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA78665.1 - 4.1e-06 26.7 0.2 7.4e-06 25.9 0.2 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 ABA78665.1 - 3.6e-05 23.8 0.1 0.022 14.8 0.0 3.0 4 0 0 4 4 4 2 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 ABA78665.1 - 0.013 15.3 0.0 1.3 8.8 0.0 2.4 2 1 0 2 2 2 0 Acid Phosphatase NIF PF03031.18 ABA78665.1 - 0.039 13.7 0.0 0.18 11.6 0.0 1.8 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.12 ABA78665.1 - 0.15 11.8 0.1 17 5.0 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase CreA PF05981.12 ABA78666.2 - 9.5e-48 161.5 0.0 1.1e-47 161.3 0.0 1.0 1 0 0 1 1 1 1 CreA protein Acyl-CoA_dh_1 PF00441.24 ABA78667.1 - 3e-42 144.3 3.0 5.6e-42 143.5 3.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 ABA78667.1 - 1.3e-37 128.9 0.7 3e-37 127.8 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 ABA78667.1 - 4.8e-25 87.6 0.0 1e-24 86.5 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 ABA78667.1 - 5.4e-15 55.8 1.4 1.2e-14 54.7 1.4 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain OmpW PF03922.14 ABA78668.2 - 1.2e-46 159.1 0.0 1.4e-46 158.9 0.0 1.0 1 0 0 1 1 1 1 OmpW family OMP_b-brl PF13505.6 ABA78668.2 - 1.9e-14 54.2 0.5 2.8e-14 53.6 0.5 1.2 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain Carboxyl_trans PF01039.22 ABA78669.2 - 1.3e-146 489.1 0.0 1.6e-146 488.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 ABA78669.2 - 6.4e-06 25.8 1.5 0.071 12.6 0.1 2.4 2 0 0 2 2 2 2 Malonate decarboxylase gamma subunit (MdcE) ECH_1 PF00378.20 ABA78669.2 - 0.07 12.4 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase CPSase_L_D2 PF02786.17 ABA78670.1 - 2.2e-72 243.0 0.0 3.6e-72 242.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 ABA78670.1 - 2.9e-42 143.7 2.3 9.2e-42 142.1 0.3 2.5 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 ABA78670.1 - 2.4e-33 114.5 0.0 7.2e-33 112.9 0.0 1.8 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 ABA78670.1 - 2.9e-17 62.3 0.1 6.1e-17 61.2 0.1 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 ABA78670.1 - 1.7e-11 43.7 0.3 2.5e-05 24.0 0.0 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.13 ABA78670.1 - 7.8e-10 38.6 0.0 2.3e-09 37.1 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 ABA78670.1 - 2e-08 34.0 0.0 3.8e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_3 PF13437.6 ABA78670.1 - 6.8e-05 23.5 0.3 0.65 10.7 0.2 2.7 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 ABA78670.1 - 0.00078 18.7 0.3 0.44 9.7 0.0 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GARS_A PF01071.19 ABA78670.1 - 0.0015 18.3 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF2118 PF09891.9 ABA78670.1 - 0.0021 18.0 0.2 0.0042 17.0 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) ATP-grasp_3 PF02655.14 ABA78670.1 - 0.0073 16.4 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 ABA78670.1 - 0.016 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain GCV_H PF01597.19 ABA78670.1 - 0.16 11.8 0.1 0.37 10.7 0.1 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein HMGL-like PF00682.19 ABA78671.1 - 1.6e-46 159.0 0.0 1.9e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 HMGL-like Aldolase_II PF00596.21 ABA78671.1 - 0.091 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain ECH_1 PF00378.20 ABA78672.1 - 5.5e-47 160.2 0.0 6.2e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 ABA78672.1 - 4.9e-27 95.3 0.1 6e-27 95.0 0.1 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Oxidored_q4 PF00507.19 ABA78673.1 - 7.2e-38 128.7 3.5 9.2e-38 128.4 3.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4307 PF14155.6 ABA78673.1 - 0.017 14.9 0.2 0.045 13.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) ATP-synt_A PF00119.20 ABA78673.1 - 0.022 14.7 5.2 0.032 14.2 5.2 1.4 1 1 0 1 1 1 0 ATP synthase A chain DUF3533 PF12051.8 ABA78673.1 - 0.34 9.8 4.3 0.4 9.6 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) MPS-4 PF17523.2 ABA78673.1 - 0.45 10.7 0.1 0.45 10.7 0.1 2.2 2 1 0 2 2 2 0 MinK-related peptide, potassium channel accessory sub-unit protein 4 Oxidored_q6 PF01058.22 ABA78674.2 - 6.1e-24 84.3 0.1 7.7e-24 84.0 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Secapin PF17521.2 ABA78674.2 - 0.077 12.8 1.9 0.22 11.4 0.0 2.5 3 0 0 3 3 3 0 Honey bee peptides Complex1_30kDa PF00329.19 ABA78675.1 - 3.3e-44 150.4 0.1 7.1e-44 149.3 0.1 1.5 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PAH PF02671.21 ABA78675.1 - 0.12 12.6 0.0 0.68 10.1 0.0 2.2 2 0 0 2 2 2 0 Paired amphipathic helix repeat Complex1_49kDa PF00346.19 ABA78676.1 - 2.1e-120 400.9 0.0 2.8e-120 400.5 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 2Fe-2S_thioredx PF01257.19 ABA78677.1 - 7.2e-51 171.9 0.0 9.1e-51 171.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF5337 PF17272.2 ABA78678.1 - 5.1e-27 93.5 6.9 5.9e-27 93.3 6.9 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5337) DUF2244 PF10003.9 ABA78678.1 - 0.063 12.9 1.2 0.072 12.8 1.2 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Complex1_51K PF01512.17 ABA78679.1 - 1.5e-50 171.0 0.0 2.2e-50 170.5 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 ABA78679.1 - 5.8e-30 103.2 0.1 1.2e-29 102.2 0.1 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 ABA78679.1 - 1.2e-07 31.5 0.0 2.6e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 SLBB domain Molybdopterin PF00384.22 ABA78681.2 - 8.7e-61 206.2 0.0 2.2e-30 106.0 0.0 2.1 1 1 1 2 2 2 2 Molybdopterin oxidoreductase NADH-G_4Fe-4S_3 PF10588.9 ABA78681.2 - 5.4e-18 64.2 0.1 5.4e-18 64.2 0.1 2.0 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer2 PF00111.27 ABA78681.2 - 1.1e-10 41.3 2.0 1.4e-10 40.9 0.1 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 ABA78681.2 - 1.2e-10 41.3 0.1 3.3e-10 39.9 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH_dhqG_C PF09326.11 ABA78681.2 - 5.8e-09 36.5 0.0 1.6e-08 35.1 0.0 1.7 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase subunit G, C-terminal AP_endonuc_2 PF01261.24 ABA78681.2 - 0.13 11.7 0.4 0.37 10.2 0.3 1.9 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel NADHdh PF00146.21 ABA78683.1 - 9.1e-120 399.5 23.9 1.1e-119 399.2 23.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 ABA78684.1 - 6.1e-15 54.3 17.4 1.1e-08 34.5 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 ABA78684.1 - 1.1e-13 51.5 10.6 1.7e-13 50.9 10.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA78684.1 - 1.1e-11 45.5 4.8 3.4e-05 24.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 ABA78684.1 - 1.6e-10 41.0 3.8 5.1e-05 23.3 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA78684.1 - 7.4e-10 39.1 1.4 0.00014 22.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA78684.1 - 1.5e-09 37.8 21.1 8.5e-07 29.0 12.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA78684.1 - 1.5e-09 37.9 10.1 2.2e-09 37.3 10.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA78684.1 - 9e-08 31.9 17.7 0.00014 21.8 5.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 ABA78684.1 - 1.2e-07 31.4 12.7 0.0016 18.4 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 ABA78684.1 - 4.4e-06 26.8 10.6 0.00042 20.6 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 ABA78684.1 - 0.00014 22.3 12.3 0.012 16.2 12.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 ABA78684.1 - 0.0047 17.5 13.6 0.3 11.6 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 ABA78684.1 - 0.0062 16.7 8.8 1.4 9.2 1.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 ABA78684.1 - 0.026 14.8 7.0 0.53 10.5 0.4 2.4 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_3 PF12798.7 ABA78684.1 - 0.037 15.0 17.4 0.23 12.5 4.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 ABA78684.1 - 0.18 11.9 5.8 1.7 8.8 0.7 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 ABA78684.1 - 0.37 11.6 12.3 2 9.3 2.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain CMD PF02627.20 ABA78685.1 - 3.9e-17 62.1 0.1 5.2e-17 61.7 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family CbbQ_C PF08406.10 ABA78685.1 - 0.023 15.0 0.3 0.051 13.8 0.2 1.6 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal Oxidored_q3 PF00499.20 ABA78686.1 - 1.5e-37 128.5 21.2 1.8e-37 128.3 21.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EphA2_TM PF14575.6 ABA78686.1 - 3.8 8.5 0.0 3.8 8.5 0.0 3.6 3 1 1 4 4 4 0 Ephrin type-A receptor 2 transmembrane domain Oxidored_q2 PF00420.24 ABA78687.1 - 1.5e-25 88.9 10.9 1.7e-25 88.6 10.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NKAIN PF05640.14 ABA78687.1 - 0.044 13.0 0.7 0.05 12.8 0.7 1.2 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein Gram_pos_anchor PF00746.21 ABA78687.1 - 0.16 12.0 4.7 0.72 9.9 0.1 2.5 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Herpes_LMP1 PF05297.11 ABA78687.1 - 0.86 8.7 6.0 0.95 8.6 6.0 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF5392 PF17370.2 ABA78687.1 - 9.6 6.3 7.9 3.1 7.9 4.8 1.6 1 1 1 2 2 2 0 Family of unknown function (DUF5392) Proton_antipo_M PF00361.20 ABA78688.1 - 1.5e-96 323.1 18.8 1.5e-96 323.1 18.8 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 ABA78688.1 - 1.3e-23 82.9 1.2 7.7e-23 80.3 1.2 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 ABA78688.1 - 0.012 15.3 0.0 1.1 8.8 0.0 2.4 2 0 0 2 2 2 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus FATC PF02260.20 ABA78688.1 - 0.063 13.1 0.1 0.34 10.8 0.0 2.2 2 0 0 2 2 2 0 FATC domain Proton_antipo_M PF00361.20 ABA78689.1 - 4.7e-93 311.6 29.3 4.7e-93 311.6 29.3 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 ABA78689.1 - 0.0012 19.0 4.2 0.0012 19.0 4.2 4.1 4 1 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 ABA78690.1 - 2e-86 289.8 22.4 2e-86 289.8 22.4 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter BPL_LplA_LipB PF03099.19 ABA78691.2 - 7e-12 45.4 0.0 9.3e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 ABA78691.2 - 1e-07 31.7 0.0 2.6e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 ABA78691.2 - 1.3e-05 24.8 0.1 2.3e-05 24.0 0.1 1.4 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Pan_kinase PF03309.14 ABA78692.1 - 1.2e-69 234.3 0.1 1.4e-69 234.1 0.1 1.0 1 0 0 1 1 1 1 Type III pantothenate kinase Lactamase_B PF00753.27 ABA78693.1 - 4.5e-15 56.2 0.7 8.2e-15 55.3 0.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA78693.1 - 2.6e-09 36.9 0.1 5.5e-09 35.8 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 ABA78693.1 - 3.6e-06 26.8 1.6 2.2e-05 24.3 0.2 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 ABA78693.1 - 0.046 13.2 0.0 0.077 12.4 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain DEAD PF00270.29 ABA78694.1 - 1.8e-47 161.4 0.0 3.2e-47 160.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 ABA78694.1 - 6.5e-32 110.2 0.0 3.4e-30 104.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 ABA78694.1 - 3.5e-06 27.1 0.0 6e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 ABA78694.1 - 0.0032 17.8 0.1 0.0097 16.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain ERCC3_RAD25_C PF16203.5 ABA78694.1 - 0.005 16.1 0.0 0.0081 15.4 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase AAA_30 PF13604.6 ABA78694.1 - 0.0057 16.4 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain UTP25 PF06862.12 ABA78694.1 - 0.061 12.1 0.0 0.5 9.1 0.0 2.2 3 0 0 3 3 3 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 GTP_EFTU PF00009.27 ABA78695.1 - 4.4e-46 156.9 0.0 6.4e-46 156.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RF3_C PF16658.5 ABA78695.1 - 1.3e-38 131.8 0.0 2.9e-38 130.6 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 ABA78695.1 - 8.2e-07 29.3 0.0 1.9e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 ABA78695.1 - 0.00014 21.9 0.0 0.0003 20.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 ABA78695.1 - 0.22 11.1 0.0 2.4 7.7 0.0 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B adh_short_C2 PF13561.6 ABA78696.1 - 4.2e-37 127.9 1.0 6.3e-37 127.4 1.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78696.1 - 2.2e-32 112.1 0.0 2.8e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA78696.1 - 0.0031 17.4 0.1 0.0048 16.8 0.1 1.3 1 0 0 1 1 1 1 KR domain ABC_tran PF00005.27 ABA78697.2 - 9.9e-35 120.0 0.0 1.3e-34 119.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA78697.2 - 9.8e-09 35.3 0.1 3.9e-08 33.4 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 ABA78697.2 - 2.6e-07 30.8 0.0 0.00066 19.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 ABA78697.2 - 0.0042 17.0 0.0 0.0065 16.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain SbcCD_C PF13558.6 ABA78697.2 - 0.009 16.2 0.1 0.13 12.5 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE PF03459.17 ABA78697.2 - 0.01 16.1 0.0 0.027 14.8 0.0 1.7 1 0 0 1 1 1 0 TOBE domain AAA_16 PF13191.6 ABA78697.2 - 0.018 15.4 0.4 0.049 14.0 0.4 1.9 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 ABA78697.2 - 0.019 14.9 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 ABA78697.2 - 0.034 13.6 0.0 1.9 7.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA78697.2 - 0.052 13.8 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 ABA78697.2 - 0.061 13.1 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 ABA78697.2 - 0.077 13.2 0.0 0.53 10.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 ABA78697.2 - 0.087 13.2 0.0 0.4 11.1 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 ABA78697.2 - 0.17 11.6 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MttA_Hcf106 PF02416.16 ABA78698.1 - 3.4e-11 42.3 0.3 3.7e-11 42.2 0.3 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family MttA_Hcf106 PF02416.16 ABA78699.1 - 5e-09 35.4 0.9 1.1e-08 34.3 0.9 1.6 1 1 0 1 1 1 1 mttA/Hcf106 family Totivirus_coat PF05518.11 ABA78699.1 - 8.1 4.4 15.2 9.1 4.2 15.2 1.0 1 0 0 1 1 1 0 Totivirus coat protein TatC PF00902.18 ABA78700.1 - 2.5e-64 216.9 16.9 3e-64 216.7 16.9 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DUF815 PF05673.13 ABA78701.1 - 2.6e-103 344.5 0.0 3e-103 344.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 ABA78701.1 - 2.5e-05 24.7 0.1 0.00028 21.3 0.0 2.4 1 1 2 3 3 3 1 AAA ATPase domain AAA PF00004.29 ABA78701.1 - 0.0004 20.8 0.0 0.00082 19.8 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 ABA78701.1 - 0.0061 16.3 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Bac_DnaA PF00308.18 ABA78701.1 - 0.007 16.2 0.0 0.016 15.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial dnaA protein RsgA_GTPase PF03193.16 ABA78701.1 - 0.037 13.9 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Peptidase_M23 PF01551.22 ABA78702.1 - 2e-19 69.6 0.0 4.4e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 LysM PF01476.20 ABA78702.1 - 7.1e-15 54.8 0.0 6.1e-09 35.8 0.0 2.6 2 0 0 2 2 2 2 LysM domain Biotin_lipoyl PF00364.22 ABA78702.1 - 0.033 14.0 0.1 0.78 9.6 0.0 2.5 2 0 0 2 2 2 0 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 ABA78702.1 - 0.1 12.5 1.2 1.3 8.9 0.1 2.9 2 0 0 2 2 2 0 Biotin-lipoyl like HTH_Tnp_1 PF01527.20 ABA78702.1 - 0.16 12.3 0.3 1.3 9.4 0.0 2.2 2 0 0 2 2 2 0 Transposase PCMT PF01135.19 ABA78703.1 - 4e-54 183.6 0.0 4.6e-54 183.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 ABA78703.1 - 1.4e-06 28.2 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA78703.1 - 5.8e-05 23.7 0.0 0.0001 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 ABA78703.1 - 0.00039 20.1 0.0 0.00058 19.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_11 PF08241.12 ABA78703.1 - 0.00054 20.6 0.0 0.0011 19.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 ABA78703.1 - 0.0016 17.5 0.0 0.0022 17.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 ABA78703.1 - 0.0039 16.9 0.0 0.0057 16.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.6 ABA78703.1 - 0.008 16.0 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA78703.1 - 0.027 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 ABA78703.1 - 0.031 14.3 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 ABA78703.1 - 0.095 12.1 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF938 PF06080.12 ABA78703.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) TehB PF03848.14 ABA78703.1 - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB GidB PF02527.15 ABA78703.1 - 0.12 11.6 0.0 0.23 10.8 0.0 1.5 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G SurE PF01975.17 ABA78704.1 - 2.5e-50 171.0 0.0 3e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 Survival protein SurE Bac_transf PF02397.16 ABA78705.2 - 1.3e-58 197.7 0.0 1.5e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase Poly_export PF02563.16 ABA78706.1 - 1.5e-13 50.8 0.0 1.9e-12 47.2 0.0 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis/export protein SLBB PF10531.9 ABA78706.1 - 5.5e-07 29.3 1.4 1.3e-05 24.9 0.0 3.3 3 1 0 3 3 3 1 SLBB domain Spc7 PF08317.11 ABA78706.1 - 0.049 12.5 7.9 0.19 10.5 8.8 1.4 2 0 0 2 2 2 0 Spc7 kinetochore protein RIO1 PF01163.22 ABA78706.1 - 0.15 11.6 0.5 8.1 6.0 0.0 2.2 2 0 0 2 2 2 0 RIO1 family FlxA PF14282.6 ABA78706.1 - 0.16 12.0 5.8 1.1 9.3 0.6 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF1664 PF07889.12 ABA78706.1 - 0.25 11.4 5.3 3.5 7.7 0.5 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) MscS_porin PF12795.7 ABA78706.1 - 0.64 9.5 21.8 6.7 6.2 19.5 2.7 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain GAS PF13851.6 ABA78706.1 - 3.5 6.9 8.9 20 4.5 8.9 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 ABA78706.1 - 6.5 6.5 6.4 19 5.0 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Wzy_C PF04932.15 ABA78707.1 - 4.4e-12 45.9 7.6 4.4e-12 45.9 7.6 3.6 2 2 1 3 3 3 1 O-Antigen ligase Glyco_hydro_16 PF00722.21 ABA78708.1 - 1.1e-33 116.2 0.1 1.2e-33 116.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 DUF1080 PF06439.11 ABA78708.1 - 2.7e-05 24.4 0.2 3.7e-05 23.9 0.2 1.1 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1080) Laminin_G_3 PF13385.6 ABA78708.1 - 0.0045 17.1 0.1 0.0074 16.4 0.1 1.3 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily BiPBP_C PF06832.12 ABA78708.1 - 0.01 15.8 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Laminin_G_2 PF02210.24 ABA78708.1 - 0.12 13.0 0.0 0.3 11.7 0.0 1.7 1 1 0 1 1 1 0 Laminin G domain CG-1 PF03859.16 ABA78708.1 - 0.15 11.9 0.1 0.94 9.3 0.0 2.0 2 0 0 2 2 2 0 CG-1 domain Glycos_transf_2 PF00535.26 ABA78709.1 - 1e-34 119.8 0.1 2.3e-34 118.7 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA78709.1 - 2e-24 86.8 0.2 3e-24 86.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 ABA78709.1 - 3.8e-14 52.8 0.0 5.3e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 ABA78709.1 - 1.7e-05 25.2 0.1 4.8e-05 23.8 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 ABA78709.1 - 2.2e-05 24.4 0.2 5.4e-05 23.2 0.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 ABA78709.1 - 0.021 14.3 0.1 0.043 13.3 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 ABA78710.1 - 1e-22 80.8 0.1 1.4e-22 80.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA78710.1 - 5.3e-12 46.1 1.2 7.1e-12 45.7 1.2 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 ABA78710.1 - 1.4e-06 28.0 0.0 0.00015 21.3 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 ABA78710.1 - 0.003 18.1 0.0 0.0081 16.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 CO_deh_flav_C PF03450.17 ABA78710.1 - 0.63 10.2 4.1 1.2 9.3 1.2 2.3 2 0 0 2 2 2 0 CO dehydrogenase flavoprotein C-terminal domain NTP_transf_5 PF14907.6 ABA78711.1 - 9.1e-30 104.1 0.0 1.4e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF2007 PF09413.10 ABA78711.1 - 0.03 14.5 0.0 0.41 10.8 0.0 2.2 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein GrpB PF04229.14 ABA78711.1 - 0.056 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 GrpB protein PqqD PF05402.12 ABA78713.1 - 1e-13 51.3 0.0 1.2e-13 51.2 0.0 1.0 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4777 PF16007.5 ABA78713.1 - 0.017 15.3 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) Lant_dehydr_N PF04738.13 ABA78713.1 - 0.075 11.1 0.0 0.076 11.1 0.0 1.0 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus Transglut_core3 PF13471.6 ABA78714.1 - 2.3e-17 62.9 6.6 3e-17 62.6 6.6 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF3493 PF11998.8 ABA78714.1 - 0.038 14.2 0.3 0.074 13.2 0.3 1.5 1 0 0 1 1 1 0 Low psii accumulation1 / Rep27 Asn_synthase PF00733.21 ABA78715.1 - 8e-43 147.5 0.1 1e-42 147.1 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 ABA78715.1 - 3.2e-15 56.1 0.0 5.4e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 ABA78715.1 - 2e-12 47.5 0.0 5e-12 46.2 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain Hpr_kinase_C PF07475.12 ABA78716.1 - 2.9e-11 43.2 0.9 4.6e-11 42.5 0.9 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.6 ABA78716.1 - 0.059 13.1 0.2 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 ABA78716.1 - 0.069 12.5 0.3 0.069 12.5 0.3 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 ABA78716.1 - 0.083 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 ABA78716.1 - 0.087 13.3 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 ABC transporter ABC_tran PF00005.27 ABA78717.2 - 1.2e-29 103.5 0.0 2e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA78717.2 - 4.6e-09 36.0 0.0 5.2e-07 29.3 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 ABA78717.2 - 3.2e-06 27.0 5.1 4.2e-06 26.6 5.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.6 ABA78717.2 - 5.5e-05 23.6 1.6 0.00031 21.2 0.7 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 ABA78717.2 - 0.00013 21.6 0.0 0.00041 20.0 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 ABA78717.2 - 0.0072 16.2 0.0 0.96 9.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA78717.2 - 0.017 15.4 0.3 0.41 10.9 0.3 2.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 ABA78717.2 - 0.051 13.8 0.2 0.47 10.7 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 ABA78717.2 - 0.16 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase GNVR PF13807.6 ABA78719.2 - 6e-10 38.9 0.2 3.6e-09 36.4 0.0 2.3 2 0 0 2 2 2 1 G-rich domain on putative tyrosine kinase Wzz PF02706.15 ABA78719.2 - 5.2e-09 36.3 0.1 1.9e-08 34.5 0.1 2.0 1 0 0 1 1 1 1 Chain length determinant protein CbiA PF01656.23 ABA78719.2 - 2.9e-08 33.8 0.0 2.8e-07 30.6 0.0 2.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 ABA78719.2 - 5.6e-07 29.3 0.0 1.4e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 ABA78719.2 - 5.7e-06 26.4 0.0 2.1e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 ABA78719.2 - 0.00014 21.4 0.3 0.00025 20.6 0.3 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 ABA78719.2 - 0.031 13.4 0.1 0.36 9.9 0.0 2.3 2 0 0 2 2 2 0 Anion-transporting ATPase MeaB PF03308.16 ABA78719.2 - 0.04 12.9 0.0 0.091 11.7 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Nbs1_C PF08599.10 ABA78719.2 - 0.067 13.3 0.3 0.14 12.3 0.3 1.5 1 0 0 1 1 1 0 DNA damage repair protein Nbs1 Spc7 PF08317.11 ABA78719.2 - 0.11 11.4 6.5 0.47 9.3 0.9 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein CLP1_P PF16575.5 ABA78719.2 - 0.12 12.2 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 ABA78719.2 - 0.17 11.3 0.0 0.38 10.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 ABA78719.2 - 0.17 11.4 4.1 0.18 11.4 0.0 2.7 3 0 0 3 3 3 0 AAA domain CENP-Q PF13094.6 ABA78719.2 - 1.1 9.5 8.9 1.6 8.9 0.8 2.4 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit LPP PF04728.13 ABA78719.2 - 1.8 9.0 9.5 2.6 8.5 1.2 4.1 4 0 0 4 4 4 0 Lipoprotein leucine-zipper TMF_TATA_bd PF12325.8 ABA78719.2 - 2.5 8.4 10.3 0.48 10.7 1.9 2.6 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Glycos_transf_2 PF00535.26 ABA78720.1 - 2.4e-13 50.3 0.0 3.2e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA78720.1 - 4e-11 43.2 0.0 7.8e-11 42.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Toprim_3 PF13362.6 ABA78720.1 - 0.0005 20.4 0.5 0.031 14.6 0.0 2.7 2 1 1 3 3 3 1 Toprim domain Glyco_trans_2_3 PF13632.6 ABA78720.1 - 0.0032 17.4 0.0 0.0065 16.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 ABA78720.1 - 0.019 14.4 0.1 0.26 10.7 0.0 2.4 2 1 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 ABA78721.1 - 9.2e-20 71.1 0.0 1.5e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA78721.1 - 3.3e-11 43.5 0.0 4.9e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 ABA78721.1 - 3.7e-10 40.0 0.8 5e-10 39.6 0.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 ABA78721.1 - 6.3e-05 22.5 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 ABA78721.1 - 0.00016 22.1 0.0 0.00035 21.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 ABA78721.1 - 0.00031 20.3 0.0 0.00056 19.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_4_4 PF13579.6 ABA78722.1 - 4.5e-08 33.7 7.8 4.5e-08 33.7 7.8 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 ABA78722.1 - 0.013 15.5 0.2 0.022 14.8 0.2 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 NTP_transferase PF00483.23 ABA78723.1 - 1.6e-24 86.9 0.0 2.5e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 ABA78723.1 - 2.8e-08 34.3 0.2 6.7e-08 33.0 0.1 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 ABA78723.1 - 0.015 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Glycos_transf_2 PF00535.26 ABA78723.1 - 0.04 13.7 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.21 ABA78724.1 - 1.2e-12 47.8 0.0 4.4e-12 46.0 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA78724.1 - 1.1e-11 44.5 0.0 1.5e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 ABA78724.1 - 0.0045 16.4 0.0 0.011 15.2 0.0 1.5 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Glyco_transf_8 PF01501.20 ABA78725.2 - 3.4e-11 43.2 0.1 2.8e-09 36.9 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 8 Nucleotid_trans PF03407.16 ABA78725.2 - 0.0011 19.0 0.4 0.0016 18.5 0.4 1.2 1 0 0 1 1 1 1 Nucleotide-diphospho-sugar transferase PALP PF00291.25 ABA78725.2 - 0.043 13.2 0.0 0.059 12.8 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Mannosyl_trans3 PF11051.8 ABA78725.2 - 0.089 12.1 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Mannosyltransferase putative Epimerase PF01370.21 ABA78726.1 - 4.8e-28 98.3 0.0 6.7e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA78726.1 - 6.2e-22 78.4 0.0 2.8e-21 76.3 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 ABA78726.1 - 1.6e-09 37.4 0.0 0.0001 21.5 0.0 2.4 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 ABA78726.1 - 6.9e-06 25.3 0.0 1.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family UDPG_MGDP_dh_N PF03721.14 ABA78726.1 - 0.002 17.7 0.0 0.0054 16.3 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RmlD_sub_bind PF04321.17 ABA78726.1 - 0.0024 17.0 0.0 0.0057 15.8 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain DJ-1_PfpI PF01965.24 ABA78727.1 - 2e-52 177.4 0.2 2.2e-52 177.2 0.2 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 ABA78727.1 - 2.8e-07 30.3 0.1 4.6e-07 29.6 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_5 PF13507.6 ABA78727.1 - 0.0015 17.7 0.0 0.0034 16.5 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain MctB PF11382.8 ABA78727.1 - 0.013 15.3 1.9 0.21 11.3 0.1 2.7 1 1 1 3 3 3 0 Copper transport outer membrane protein, MctB GATase PF00117.28 ABA78727.1 - 0.076 12.8 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GATase_3 PF07685.14 ABA78727.1 - 0.22 11.1 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Bac_luciferase PF00296.20 ABA78728.1 - 1.3e-40 139.7 3.2 1.8e-40 139.3 3.2 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase HTH_Crp_2 PF13545.6 ABA78729.1 - 7.6e-17 61.1 0.1 1.6e-16 60.0 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 ABA78729.1 - 4e-13 49.3 0.1 6.4e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Crp PF00325.20 ABA78729.1 - 8.9e-08 31.6 0.0 2.1e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.6 ABA78730.1 - 1.2e-05 25.2 2.1 1.9e-05 24.5 2.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF3280 PF11684.8 ABA78731.1 - 1.4e-48 164.7 0.2 1.7e-48 164.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2380) TraW_N PF12477.8 ABA78731.1 - 0.044 13.7 0.5 0.11 12.4 0.5 1.7 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal GFA PF04828.14 ABA78732.1 - 2.7e-10 40.4 0.0 4.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme ADH_N PF08240.12 ABA78733.1 - 1.1e-24 86.4 0.4 2.5e-24 85.3 0.4 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA78733.1 - 6.5e-19 68.2 0.1 1.2e-18 67.3 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA78733.1 - 4.5e-06 27.8 0.0 8.1e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ThiF PF00899.21 ABA78733.1 - 0.51 9.6 2.3 5.1 6.4 1.8 2.1 2 0 0 2 2 2 0 ThiF family Cytochrom_C PF00034.21 ABA78734.1 - 1e-09 39.4 0.2 3.7e-09 37.6 0.2 1.8 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA78734.1 - 6.7e-05 23.1 2.1 0.00032 20.9 2.1 1.9 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III CCP_MauG PF03150.14 ABA78734.1 - 0.019 15.6 0.0 0.024 15.3 0.0 1.2 1 0 0 1 1 1 0 Di-haem cytochrome c peroxidase PQQ PF01011.21 ABA78735.1 - 1.3e-37 126.0 15.7 2.2e-08 33.6 0.0 7.7 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_2 PF13360.6 ABA78735.1 - 3.2e-24 85.8 1.8 1.9e-16 60.4 0.1 4.0 3 2 0 3 3 3 2 PQQ-like domain PQQ_3 PF13570.6 ABA78735.1 - 3.6e-18 65.5 18.9 6.8e-05 23.2 0.2 7.7 9 0 0 9 9 9 4 PQQ-like domain Cytochrome_CBB3 PF13442.6 ABA78736.1 - 1.3e-07 31.8 0.0 2.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA78736.1 - 0.0053 17.9 0.1 0.01 17.0 0.1 1.5 1 1 0 1 1 1 1 Cytochrome c SBP_bac_3 PF00497.20 ABA78737.1 - 5.2e-15 55.5 0.0 6.6e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.20 ABA78737.1 - 3.5e-05 23.3 0.0 0.087 12.2 0.0 2.5 2 0 0 2 2 2 2 LysR substrate binding domain Rhodanese PF00581.20 ABA78738.1 - 3.3e-05 24.4 0.0 3.9e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Lactonase PF10282.9 ABA78740.2 - 6e-17 61.9 0.0 5.4e-06 25.9 0.0 3.4 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 ABA78740.2 - 9.7e-09 34.2 0.0 0.0096 14.5 0.0 3.8 2 1 2 4 4 4 3 Cytochrome D1 heme domain ANAPC4_WD40 PF12894.7 ABA78740.2 - 1.1e-07 32.0 0.1 0.12 12.7 0.0 5.3 2 1 2 5 5 5 1 Anaphase-promoting complex subunit 4 WD40 domain SGL PF08450.12 ABA78740.2 - 3e-07 30.3 0.1 0.71 9.4 0.0 4.3 3 1 1 4 4 4 2 SMP-30/Gluconolactonase/LRE-like region WD40 PF00400.32 ABA78740.2 - 6e-05 23.7 0.0 0.088 13.7 0.0 3.3 4 0 0 4 4 4 1 WD domain, G-beta repeat PD40 PF07676.12 ABA78740.2 - 0.00031 20.6 0.0 0.38 10.7 0.0 4.7 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat DUF4221 PF13970.6 ABA78740.2 - 0.00038 20.1 0.0 1.2 8.6 0.0 3.2 2 1 2 4 4 4 2 Domain of unknown function (DUF4221) Arylesterase PF01731.20 ABA78740.2 - 0.0049 17.0 0.0 2.5 8.3 0.0 3.4 4 0 0 4 4 4 1 Arylesterase FlaG PF03646.15 ABA78740.2 - 0.01 16.0 1.4 11 6.2 0.0 3.3 3 0 0 3 3 3 0 FlaG protein NHL PF01436.21 ABA78740.2 - 0.033 14.2 6.8 42 4.4 0.0 6.1 6 0 0 6 6 6 0 NHL repeat Glu_cyclase_2 PF05096.12 ABA78740.2 - 0.038 13.4 0.2 0.46 9.9 0.1 2.6 1 1 1 2 2 2 0 Glutamine cyclotransferase SoxG PF04268.12 ABA78740.2 - 0.15 12.2 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 Sarcosine oxidase, gamma subunit family PepSY_2 PF13670.6 ABA78742.1 - 6.7e-05 22.8 0.8 9e-05 22.4 0.8 1.2 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain Orthopox_F14 PF06076.12 ABA78742.1 - 0.042 14.1 0.2 0.064 13.5 0.1 1.4 1 1 0 1 1 1 0 Orthopoxvirus F14 protein ABC_tran PF00005.27 ABA78743.1 - 5.8e-31 107.8 0.0 7.5e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78743.1 - 0.00023 21.1 2.4 0.047 13.5 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA78743.1 - 0.0032 17.2 1.2 0.011 15.5 1.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA78743.1 - 0.0051 17.1 0.1 0.012 15.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 ABA78743.1 - 0.013 15.7 0.4 0.27 11.5 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 ABA78743.1 - 0.018 14.7 0.1 0.031 13.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 ABA78743.1 - 0.024 14.1 0.0 4.5 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 ABA78743.1 - 0.046 12.9 0.1 0.2 10.8 0.1 1.9 1 1 0 1 1 1 0 NB-ARC domain DLIC PF05783.11 ABA78743.1 - 0.094 11.5 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) DUF3584 PF12128.8 ABA78743.1 - 0.099 10.2 0.2 0.13 9.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_29 PF13555.6 ABA78743.1 - 0.1 12.4 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 ABA78743.1 - 0.11 12.9 0.1 0.95 9.9 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 ABA78743.1 - 0.12 12.9 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA78743.1 - 0.19 11.3 4.3 2.8 7.5 4.0 2.5 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 ABA78744.1 - 3.5e-35 121.3 18.8 3.5e-35 121.3 18.8 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 ABA78744.1 - 2.8e-14 53.0 19.7 3.6e-14 52.7 19.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 ABA78744.1 - 1.1e-08 34.8 13.7 1.8e-08 34.1 13.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 ABA78744.1 - 0.017 15.1 6.9 0.037 14.0 6.9 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 ABA78744.1 - 3.9 7.0 10.8 3.2 7.3 7.7 2.3 1 1 1 2 2 2 0 ABC-2 family transporter protein BRE1 PF08647.11 ABA78745.1 - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase Lactamase_B PF00753.27 ABA78746.2 - 9.7e-21 74.7 3.1 9.7e-21 74.7 3.1 1.6 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA78746.2 - 4.2e-07 29.7 0.0 7.1e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SoxY PF13501.6 ABA78747.1 - 4.9e-29 100.8 0.0 1e-28 99.8 0.0 1.5 2 0 0 2 2 2 1 Sulfur oxidation protein SoxY SoxZ PF08770.11 ABA78747.1 - 7.3e-22 77.0 0.0 1.1e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Sulphur oxidation protein SoxZ Response_reg PF00072.24 ABA78748.1 - 1.7e-22 79.7 0.0 2.7e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 ABA78748.1 - 3.1e-19 68.2 0.3 5e-19 67.6 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA78748.1 - 0.00075 19.1 0.1 0.0014 18.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2089 PF09862.9 ABA78748.1 - 0.15 12.1 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) FIST PF08495.10 ABA78749.1 - 1.3e-29 103.5 0.9 9.5e-29 100.6 0.3 2.1 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 ABA78749.1 - 8.8e-17 61.3 0.5 8e-16 58.2 0.1 2.5 3 0 0 3 3 3 1 FIST C domain HATPase_c PF02518.26 ABA78750.1 - 2e-21 76.6 0.0 3.3e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA78750.1 - 6.5e-12 45.6 0.0 1.6e-11 44.4 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 ABA78750.1 - 1.3e-08 34.7 0.8 7.3e-08 32.3 0.8 2.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Jnk-SapK_ap_N PF09744.9 ABA78750.1 - 0.019 15.2 2.8 0.046 13.9 2.8 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 HATPase_c_2 PF13581.6 ABA78750.1 - 0.076 13.0 0.9 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain ABC_tran PF00005.27 ABA78753.1 - 9.9e-30 103.8 0.0 1.4e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78753.1 - 4.8e-11 43.0 0.1 1.9e-06 27.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA78753.1 - 1.3e-07 32.2 0.3 2.4e-07 31.3 0.3 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA78753.1 - 7.8e-06 26.3 0.1 4.4e-05 23.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 ABA78753.1 - 0.00034 20.8 0.2 0.0017 18.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 ABA78753.1 - 0.00058 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 ABA78753.1 - 0.00091 19.0 0.2 0.0027 17.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 ABA78753.1 - 0.0012 19.1 0.0 0.0031 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 ABA78753.1 - 0.0016 18.4 0.3 0.01 15.8 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 ABA78753.1 - 0.0035 17.6 0.0 0.018 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 ABA78753.1 - 0.0064 16.4 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_5 PF07728.14 ABA78753.1 - 0.0067 16.4 0.1 0.043 13.8 0.1 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 ABA78753.1 - 0.0073 16.2 0.0 0.024 14.6 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_29 PF13555.6 ABA78753.1 - 0.028 14.1 0.0 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 ABA78753.1 - 0.034 13.6 0.0 5.4 6.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 ABA78753.1 - 0.044 13.5 0.0 8 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 ABA78753.1 - 0.046 14.2 0.0 0.069 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA78753.1 - 0.049 13.2 0.7 0.15 11.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 ABA78753.1 - 0.051 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA78753.1 - 0.055 13.9 0.0 0.17 12.3 0.0 1.7 2 0 0 2 2 2 0 RNA helicase SbcCD_C PF13558.6 ABA78753.1 - 0.11 12.8 0.5 0.31 11.3 0.5 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 ABA78753.1 - 0.13 11.4 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 ABA78753.1 - 0.17 11.2 0.0 0.37 10.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 ABA78753.1 - 0.19 11.5 0.1 0.3 10.8 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.16 ABA78753.1 - 0.19 11.2 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein Adeno_IVa2 PF02456.15 ABA78753.1 - 0.21 10.3 0.0 0.81 8.4 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_24 PF13479.6 ABA78753.1 - 0.22 11.2 0.0 0.44 10.2 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.6 ABA78753.1 - 0.35 11.4 1.6 0.44 11.1 0.1 1.9 3 0 0 3 3 1 0 AAA domain NMT1 PF09084.11 ABA78754.1 - 1.1e-16 61.4 0.0 1.7e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 ABA78754.1 - 2.6e-06 27.2 0.9 3.5e-06 26.8 0.9 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 ABA78754.1 - 3.9e-06 26.5 0.0 6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1_2 PF13379.6 ABA78754.1 - 6.9e-05 22.7 3.6 0.00045 20.0 3.6 2.1 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 ABA78754.1 - 0.017 14.6 0.0 0.19 11.2 0.0 2.1 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 ABA78754.1 - 0.018 14.6 1.2 3.4 7.2 0.0 2.4 2 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system DUF2163 PF09931.9 ABA78754.1 - 0.15 12.2 0.1 0.79 9.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2163) LRV PF01816.17 ABA78754.1 - 1.5 9.3 7.8 0.41 11.1 0.8 3.4 3 0 0 3 3 3 0 Leucine rich repeat variant BPD_transp_1 PF00528.22 ABA78755.1 - 3.2e-17 62.9 18.2 3.2e-17 62.9 18.2 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Response_reg PF00072.24 ABA78756.1 - 6.4e-30 103.6 0.0 8.6e-30 103.2 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA78756.1 - 3e-25 88.1 0.0 1.8e-24 85.6 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 ABA78756.1 - 0.23 11.8 0.0 0.44 10.8 0.0 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PhoU PF01895.19 ABA78757.1 - 4.3e-42 142.5 16.3 4.2e-21 75.2 4.5 2.1 2 0 0 2 2 2 2 PhoU domain XLF PF09302.11 ABA78757.1 - 0.037 14.2 0.3 0.075 13.2 0.2 1.5 2 0 0 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component DUF4088 PF13317.6 ABA78757.1 - 0.053 13.1 3.7 0.081 12.5 3.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4088) ADIP PF11559.8 ABA78757.1 - 0.074 13.1 0.6 12 6.0 0.2 2.4 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF2884 PF11101.8 ABA78757.1 - 0.2 11.1 2.5 1.6 8.2 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2884) FOXP-CC PF16159.5 ABA78757.1 - 0.25 12.0 1.3 7.8 7.2 0.1 2.4 2 0 0 2 2 2 0 FOXP coiled-coil domain CcdA PF07362.12 ABA78757.1 - 1.5 9.3 5.1 2.4 8.6 2.3 2.2 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA ABC_tran PF00005.27 ABA78758.1 - 6.4e-31 107.7 0.0 9.6e-31 107.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA78758.1 - 7.8e-11 42.3 0.0 0.00023 21.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA78758.1 - 1.8e-06 27.6 0.0 1.8e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 ABA78758.1 - 8.1e-05 22.5 0.0 0.00032 20.5 0.0 1.7 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 ABA78758.1 - 0.00041 20.9 0.0 0.00081 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA78758.1 - 0.00067 19.6 0.0 0.0014 18.6 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 ABA78758.1 - 0.0026 17.5 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA78758.1 - 0.0033 17.1 0.1 0.97 9.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 ABA78758.1 - 0.0035 17.5 0.0 0.0072 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA78758.1 - 0.0049 17.3 0.1 0.015 15.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA78758.1 - 0.005 17.1 0.1 0.02 15.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 ABA78758.1 - 0.035 14.0 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 ABA78758.1 - 0.085 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 ABA78758.1 - 0.095 12.3 0.0 0.55 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA78758.1 - 0.14 12.7 0.0 0.34 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF3333 PF11812.8 ABA78759.1 - 3.9e-45 153.8 0.5 9.4e-45 152.5 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3333) BPD_transp_1 PF00528.22 ABA78759.1 - 2.1e-19 70.0 15.4 2.1e-19 70.0 15.4 2.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3708 PF12501.8 ABA78760.1 - 4.9e-38 130.5 15.0 3.9e-36 124.4 10.4 2.6 1 1 1 2 2 2 2 Phosphate ATP-binding cassette transporter BPD_transp_1 PF00528.22 ABA78760.1 - 1.4e-14 54.2 15.4 1.4e-14 54.2 15.4 3.0 2 2 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 ABA78761.1 - 3.9e-50 171.1 0.5 4.6e-50 170.9 0.5 1.0 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 ABA78761.1 - 0.00025 20.2 0.0 0.00051 19.2 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain SRAP PF02586.14 ABA78762.1 - 4e-42 144.2 0.0 4.7e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) HTH_5 PF01022.20 ABA78763.2 - 2.6e-11 43.2 1.2 4.5e-11 42.4 1.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 ABA78763.2 - 4.5e-10 39.4 1.9 6.5e-10 38.9 1.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA78763.2 - 7.8e-05 22.5 0.7 0.00012 21.9 0.7 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 ABA78763.2 - 0.0013 18.5 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 ABA78763.2 - 0.0036 17.2 0.0 0.0054 16.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 ABA78763.2 - 0.0042 17.0 0.4 0.0059 16.6 0.4 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 ABA78763.2 - 0.0068 16.3 0.3 0.017 15.0 0.2 1.6 1 1 1 2 2 2 1 MarR family Fe_dep_repress PF01325.19 ABA78763.2 - 0.051 13.8 0.1 0.09 13.0 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 ABA78763.2 - 0.052 13.9 0.1 0.072 13.4 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 ABA78763.2 - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Flavin_Reduct PF01613.18 ABA78764.1 - 7.3e-30 104.1 0.0 9e-30 103.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CorA PF01544.18 ABA78765.1 - 1.1e-43 149.6 0.0 1.4e-43 149.3 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DCD PF06559.11 ABA78766.1 - 7.3e-171 567.8 0.0 8.2e-171 567.7 0.0 1.0 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) MerR_1 PF13411.6 ABA78767.1 - 2.2e-23 82.1 0.0 3.2e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 ABA78767.1 - 9.1e-09 34.9 0.1 2.4e-08 33.6 0.1 1.8 1 0 0 1 1 1 1 MerR family regulatory protein HTH_17 PF12728.7 ABA78767.1 - 0.073 13.3 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Bac_DNA_binding PF00216.21 ABA78768.1 - 8.9e-27 93.1 0.0 9.9e-27 93.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 ABA78768.1 - 2.2e-06 27.8 0.0 2.4e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_1 PF18174.1 ABA78768.1 - 0.00082 19.2 0.0 0.0012 18.6 0.0 1.3 1 1 0 1 1 1 1 CCDC81-like prokaryotic HU domain 1 HU-CCDC81_euk_1 PF14908.6 ABA78768.1 - 0.0028 17.8 0.0 0.003 17.7 0.0 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 1 HU-CCDC81_bac_2 PF18175.1 ABA78768.1 - 0.011 15.5 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_2 PF18289.1 ABA78768.1 - 0.014 15.5 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 NA37 PF04245.13 ABA78768.1 - 0.069 12.6 0.0 0.073 12.5 0.0 1.0 1 0 0 1 1 1 0 37-kD nucleoid-associated bacterial protein ACP_syn_III_C PF08541.10 ABA78769.1 - 4.1e-35 119.8 1.6 2.5e-33 114.1 0.2 2.9 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 ABA78769.1 - 2.5e-34 117.0 2.1 4.4e-34 116.2 2.1 1.4 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 ABA78769.1 - 3e-11 43.2 1.5 1.3e-10 41.1 0.2 2.1 1 1 0 2 2 2 1 Thiolase, N-terminal domain Chal_sti_synt_N PF00195.19 ABA78769.1 - 8.8e-06 25.3 2.5 1.4e-05 24.7 1.1 2.0 2 1 1 3 3 3 1 Chalcone and stilbene synthases, N-terminal domain FAE1_CUT1_RppA PF08392.12 ABA78769.1 - 0.0047 16.3 0.0 0.0074 15.6 0.0 1.3 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein Thiolase_C PF02803.18 ABA78769.1 - 0.011 15.4 0.1 6.1 6.5 0.0 2.6 2 1 0 2 2 2 0 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 ABA78769.1 - 0.011 15.7 0.1 1.6 8.8 0.0 2.5 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 ABA78769.1 - 0.04 13.5 12.1 0.48 10.0 1.0 3.6 2 1 2 4 4 4 0 Beta-ketoacyl synthase, N-terminal domain SBP_bac_5 PF00496.22 ABA78769.1 - 0.067 12.1 0.0 0.19 10.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle FA_synthesis PF02504.15 ABA78770.1 - 2.5e-108 362.0 0.3 2.9e-108 361.8 0.3 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein Ribosomal_L32p PF01783.23 ABA78771.1 - 1.4e-25 89.3 3.7 1.5e-25 89.2 3.7 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family OrfB_Zn_ribbon PF07282.11 ABA78771.1 - 0.0057 16.6 2.5 0.0068 16.3 2.0 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 ABA78771.1 - 0.014 15.4 0.8 0.019 15.0 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 ABA78771.1 - 0.036 13.5 6.0 0.071 12.5 6.0 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 ABA78771.1 - 0.048 13.8 3.5 0.78 9.9 0.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-RING_7 PF02591.15 ABA78771.1 - 0.098 12.9 3.4 0.71 10.1 0.4 2.4 2 1 0 2 2 2 0 C4-type zinc ribbon domain Rubredoxin_2 PF18073.1 ABA78771.1 - 0.38 10.5 4.0 4.9 7.0 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 ABA78771.1 - 2.2 7.9 6.4 10 5.8 6.4 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding YceD PF02620.17 ABA78772.1 - 8.9e-12 45.2 0.0 1.2e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Large ribosomal RNA subunit accumulation protein YceD SmpA_OmlA PF04355.13 ABA78773.1 - 1.1e-17 63.5 0.1 1.7e-17 63.0 0.1 1.3 1 0 0 1 1 1 1 SmpA / OmlA family SelR PF01641.18 ABA78774.1 - 3.5e-47 159.4 0.0 4.1e-47 159.2 0.0 1.0 1 0 0 1 1 1 1 SelR domain HECT_2 PF09814.9 ABA78774.1 - 0.0029 16.5 0.0 0.34 9.7 0.0 2.0 1 1 1 2 2 2 2 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Yippee-Mis18 PF03226.14 ABA78774.1 - 0.0084 16.3 0.0 0.033 14.4 0.0 1.8 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Acetyltransf_5 PF13444.6 ABA78775.1 - 2e-18 67.0 0.0 3.4e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Autoind_synth PF00765.17 ABA78775.1 - 2.1e-05 24.1 0.0 5.9e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 Autoinducer synthase tRNA_Me_trans PF03054.16 ABA78776.1 - 3.2e-111 371.6 0.0 3.6e-111 371.4 0.0 1.0 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 ABA78776.1 - 4.2e-05 23.4 0.0 7.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 ABA78776.1 - 0.0035 16.5 0.0 0.0056 15.8 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 ABA78776.1 - 0.0061 16.1 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 ABA78776.1 - 0.078 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 ABA78776.1 - 0.23 10.7 0.1 0.36 10.0 0.1 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase DUF1153 PF06627.11 ABA78777.1 - 4.1e-39 132.6 0.2 4.5e-39 132.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1153) HTH_Tnp_1 PF01527.20 ABA78777.1 - 0.066 13.5 0.9 0.081 13.3 0.9 1.1 1 0 0 1 1 1 0 Transposase Response_reg PF00072.24 ABA78778.1 - 6.2e-26 90.8 0.0 9.5e-26 90.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA78778.1 - 9.6e-21 73.7 0.0 2.2e-20 72.5 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Myosin-VI_CBD PF16521.5 ABA78778.1 - 0.06 13.3 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Myosin VI cargo binding domain DNA_ligase_aden PF01653.18 ABA78779.1 - 1.2e-117 392.6 0.0 1.6e-117 392.2 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 ABA78779.1 - 3.8e-31 106.8 0.3 7e-31 106.0 0.3 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 ABA78779.1 - 2.3e-14 53.2 0.9 2.2e-13 50.1 0.3 2.9 2 1 0 2 2 2 1 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.16 ABA78779.1 - 3.8e-11 42.8 4.4 1.2e-10 41.2 4.4 1.9 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain BRCT PF00533.26 ABA78779.1 - 2.3e-10 40.7 0.0 3.7e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH_5 PF14520.6 ABA78779.1 - 2.5e-06 28.0 0.0 0.19 12.4 0.0 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix domain PTCB-BRCT PF12738.7 ABA78779.1 - 0.011 15.7 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 0 twin BRCT domain zf-NADH-PPase PF09297.11 ABA78779.1 - 0.76 9.5 3.4 2 8.1 3.4 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Helicase_C PF00271.31 ABA78780.1 - 2.8e-18 66.3 0.0 2.3e-15 56.9 0.0 2.3 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 ABA78780.1 - 6.6e-14 52.1 0.1 1.1e-13 51.3 0.1 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 ABA78780.1 - 4e-07 30.2 0.0 7.2e-07 29.4 0.0 1.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit RecG_wedge PF17191.4 ABA78780.1 - 6.1e-06 25.9 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 RecG wedge domain tRNA_anti-codon PF01336.25 ABA78780.1 - 0.0029 17.5 0.0 0.0055 16.7 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HHH PF00633.23 ABA78780.1 - 0.011 15.6 0.0 0.029 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 ABA78780.1 - 0.048 14.3 0.0 0.14 12.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain IstB_IS21 PF01695.17 ABA78780.1 - 0.05 13.3 0.1 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein TsaE PF02367.17 ABA78780.1 - 0.057 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 ABA78780.1 - 0.064 13.0 8.5 0.5 10.1 8.5 2.3 1 1 0 1 1 1 0 AAA domain SecA_DEAD PF07517.14 ABA78780.1 - 0.14 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain Cdd1 PF11731.8 ABA78780.1 - 0.19 12.0 0.0 0.44 10.8 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus NifU_N PF01592.16 ABA78782.1 - 0.00014 22.0 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 NifU-like N terminal domain PRA-CH PF01502.18 ABA78783.1 - 2e-35 120.4 0.4 2.6e-35 120.1 0.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase tRNA-synt_1c PF00749.21 ABA78784.1 - 1.3e-37 129.3 0.0 3.4e-23 82.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (E and Q), catalytic domain PaaA_PaaC PF05138.12 ABA78784.1 - 0.011 14.9 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 Phenylacetic acid catabolic protein PIEZO PF15917.5 ABA78784.1 - 0.3 10.6 0.0 0.44 10.0 0.0 1.2 1 0 0 1 1 1 0 Piezo GIDA PF01134.22 ABA78785.1 - 5.1e-106 355.1 0.0 6e-106 354.8 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 ABA78785.1 - 0.00011 22.4 0.0 0.00026 21.1 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 ABA78785.1 - 0.00041 19.7 0.0 0.00066 19.0 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 ABA78785.1 - 0.00042 20.0 0.2 0.00065 19.4 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 ABA78785.1 - 0.00047 19.6 0.3 0.00076 18.9 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA78785.1 - 0.00089 18.6 0.1 0.0018 17.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA78785.1 - 0.013 14.6 0.4 0.032 13.3 0.3 1.6 1 1 1 2 2 2 0 FAD binding domain Mur_ligase PF01225.25 ABA78785.1 - 0.042 14.2 0.0 0.091 13.1 0.0 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Pyr_redox PF00070.27 ABA78785.1 - 0.088 13.4 0.1 0.18 12.4 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA78785.1 - 0.091 11.4 0.1 0.25 10.0 0.1 1.6 2 0 0 2 2 2 0 HI0933-like protein 3HCDH_N PF02737.18 ABA78785.1 - 0.093 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DGOK PF05035.12 ABA78785.1 - 0.11 11.3 0.1 0.24 10.3 0.1 1.5 1 0 0 1 1 1 0 2-keto-3-deoxy-galactonokinase DNA_topoisoIV PF00521.20 ABA78786.1 - 5.3e-148 493.4 0.0 6.7e-148 493.1 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 ABA78786.1 - 1.1e-55 184.8 16.7 1e-14 53.7 0.1 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF1576 PF07613.11 ABA78786.1 - 0.21 11.1 0.0 0.39 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1576) Usg PF06233.12 ABA78787.1 - 1.2e-41 140.8 0.1 1.3e-41 140.6 0.1 1.0 1 0 0 1 1 1 1 Usg-like family Adeno_E3A PF05248.12 ABA78787.1 - 0.13 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus E3A Arginase PF00491.21 ABA78788.1 - 6.4e-68 229.3 0.0 7.6e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family CcmF_C PF16327.5 ABA78789.1 - 9.7e-119 396.4 6.4 9.7e-119 396.4 6.4 2.1 2 0 0 2 2 2 1 Cytochrome c-type biogenesis protein CcmF C-terminal Cytochrom_C_asm PF01578.20 ABA78789.1 - 1.7e-53 181.6 16.1 1.7e-53 181.6 16.1 2.6 3 0 0 3 3 3 1 Cytochrome C assembly protein CcmH PF03918.14 ABA78790.1 - 3.4e-50 169.1 0.0 4e-50 168.8 0.0 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein Gram_pos_anchor PF00746.21 ABA78790.1 - 0.00073 19.4 1.8 0.00073 19.4 1.8 2.1 2 0 0 2 2 2 1 LPXTG cell wall anchor motif ALS_ss_C PF10369.9 ABA78791.1 - 6.5e-27 93.5 0.1 1.5e-26 92.4 0.1 1.6 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 ABA78791.1 - 1.9e-11 43.6 0.0 3.2e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 ABA78791.1 - 2e-09 37.0 0.3 4.9e-09 35.8 0.3 1.6 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 ABA78792.1 - 4.7e-59 198.9 0.3 1.7e-58 197.0 0.3 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 ABA78792.1 - 2.1e-49 167.2 0.0 2.1e-48 164.0 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 ABA78792.1 - 5.9e-41 139.4 0.0 1.1e-40 138.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 ABA78792.1 - 0.015 15.1 0.1 0.024 14.4 0.1 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Na_Ca_ex PF01699.24 ABA78793.1 - 5.8e-53 178.9 33.4 2.5e-29 102.2 9.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ATE_C PF04377.15 ABA78794.1 - 1.6e-33 116.2 0.0 2.5e-33 115.6 0.0 1.3 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, C terminus ATE_N PF04376.13 ABA78794.1 - 1e-16 61.1 0.9 1.6e-16 60.5 0.9 1.3 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, N terminus Acetyltransf_6 PF13480.7 ABA78794.1 - 0.0043 17.2 1.3 0.009 16.2 1.3 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain RDD PF06271.12 ABA78795.1 - 7.9e-16 58.5 6.9 1e-15 58.1 6.9 1.1 1 0 0 1 1 1 1 RDD family DUF2852 PF11014.8 ABA78796.1 - 3e-39 133.9 10.8 3.7e-38 130.4 10.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2852) tRNA_edit PF04073.15 ABA78797.1 - 2.6e-19 69.5 0.0 3.3e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain GlnE PF03710.15 ABA78798.2 - 2.1e-116 387.7 0.2 9.7e-60 202.1 0.0 2.5 2 0 0 2 2 2 2 Glutamate-ammonia ligase adenylyltransferase GlnD_UR_UTase PF08335.11 ABA78798.2 - 1.5e-38 132.2 1.8 2.1e-34 118.7 0.2 2.4 2 0 0 2 2 2 2 GlnD PII-uridylyltransferase NTP_transf_2 PF01909.23 ABA78798.2 - 6.2e-06 26.4 0.0 0.17 12.2 0.0 2.4 2 0 0 2 2 2 2 Nucleotidyltransferase domain Polbeta PF18765.1 ABA78798.2 - 0.017 15.2 0.0 7.6 6.7 0.0 2.4 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 ABA78798.2 - 0.024 14.4 0.0 12 5.7 0.0 2.7 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 ABA78798.2 - 0.098 12.4 0.9 6.7 6.5 0.0 2.6 2 0 0 2 2 2 0 Putative nucleotidyltransferase substrate binding domain Aldolase PF01081.19 ABA78800.1 - 1.2e-67 227.1 0.6 1.5e-67 226.8 0.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase Methyltrans_SAM PF10672.9 ABA78801.1 - 1.2e-16 60.7 0.0 1.7e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase PUA_3 PF17785.1 ABA78801.1 - 1e-13 50.8 0.0 6.2e-13 48.3 0.0 2.2 3 0 0 3 3 3 1 PUA-like domain Cons_hypoth95 PF03602.15 ABA78801.1 - 7.2e-09 35.5 0.0 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 ABA78801.1 - 2.4e-07 30.7 0.0 3.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA78801.1 - 2.4e-05 24.9 0.0 4.9e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 ABA78801.1 - 8.9e-05 23.5 0.0 0.0003 21.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 ABA78801.1 - 0.0013 18.3 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 ABA78801.1 - 0.0017 18.0 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 ABA78801.1 - 0.0068 15.8 0.1 0.033 13.6 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 ABA78801.1 - 0.021 14.7 0.0 0.33 10.8 0.0 2.5 2 1 0 2 2 2 0 Methyltransferase domain UPF0020 PF01170.18 ABA78801.1 - 0.025 14.3 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_10 PF05971.12 ABA78801.1 - 0.053 12.8 0.0 0.082 12.2 0.0 1.3 1 1 0 1 1 1 0 RNA methyltransferase Methyltransf_18 PF12847.7 ABA78801.1 - 0.21 11.5 0.0 0.37 10.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PIN_3 PF13470.6 ABA78802.1 - 2e-15 57.6 0.0 3.1e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 PIN domain Peptidase_M48 PF01435.18 ABA78803.1 - 2.2e-26 92.9 0.0 2.8e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M78 PF06114.13 ABA78803.1 - 0.002 18.0 1.0 0.0051 16.7 0.4 2.0 2 1 0 2 2 2 1 IrrE N-terminal-like domain DUF1403 PF07183.11 ABA78803.1 - 0.0091 15.6 0.4 0.052 13.1 0.2 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1403) DUF2201_N PF13203.6 ABA78803.1 - 0.018 14.7 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF2268 PF10026.9 ABA78803.1 - 0.085 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) VWA_CoxE PF05762.14 ABA78804.1 - 5.4e-10 39.0 0.1 1.4e-09 37.7 0.0 1.6 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein DUF2271 PF10029.9 ABA78804.1 - 0.3 10.7 1.3 0.62 9.7 0.1 2.1 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2271) Romo1 PF10247.9 ABA78805.1 - 0.19 12.1 2.9 0.23 11.9 2.9 1.2 1 0 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 DUF2273 PF10031.9 ABA78805.1 - 2.7 8.1 9.9 0.77 9.8 0.8 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) DUF2927 PF11150.8 ABA78806.2 - 7.8e-56 189.4 0.0 1.1e-55 189.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2927) TPR_12 PF13424.6 ABA78806.2 - 0.015 15.6 3.6 0.015 15.6 3.6 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Acetyltransf_1 PF00583.25 ABA78807.1 - 4e-13 49.6 0.1 4.9e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 ABA78807.1 - 4.5e-07 30.6 0.1 5.5e-07 30.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA78807.1 - 2.1e-06 27.6 0.0 3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 ABA78807.1 - 2.4e-05 24.7 0.0 3.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA78807.1 - 0.00011 22.1 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA78807.1 - 0.00017 21.7 0.0 0.00035 20.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA78807.1 - 0.0035 17.4 0.0 0.01 15.9 0.0 1.8 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Gly_acyl_tr_C PF08444.10 ABA78807.1 - 0.12 12.6 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region AAA PF00004.29 ABA78808.1 - 2.2e-15 57.2 0.0 3.5e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA78808.1 - 1.3e-12 47.9 0.1 2.7e-12 46.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA78808.1 - 2.6e-07 31.0 0.0 8.8e-07 29.3 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_2 PF07724.14 ABA78808.1 - 2.9e-07 30.8 0.0 4.2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 ABA78808.1 - 4.9e-07 29.6 0.0 0.022 14.4 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.6 ABA78808.1 - 2.7e-06 27.9 3.2 0.00026 21.4 0.9 3.0 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 ABA78808.1 - 0.00018 21.5 0.1 0.025 14.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 ABA78808.1 - 0.00039 21.0 0.0 0.001 19.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA78808.1 - 0.00078 19.2 0.0 0.0017 18.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 ABA78808.1 - 0.00079 19.4 0.0 0.0015 18.6 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 ABA78808.1 - 0.0014 18.5 0.0 0.35 10.7 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 ABA78808.1 - 0.0022 18.3 0.4 0.016 15.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 ABA78808.1 - 0.0072 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 ABA78808.1 - 0.0094 15.7 0.2 0.027 14.2 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 ABA78808.1 - 0.012 15.8 0.0 0.019 15.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA78808.1 - 0.02 14.9 0.0 0.041 13.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 ABA78808.1 - 0.02 14.1 0.1 0.075 12.2 0.0 1.8 2 0 0 2 2 2 0 TIP49 P-loop domain Sigma54_activ_2 PF14532.6 ABA78808.1 - 0.037 14.1 0.0 0.31 11.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.22 ABA78808.1 - 0.048 12.8 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 ABA78808.1 - 0.051 13.0 0.0 0.14 11.6 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_6 PF12774.7 ABA78808.1 - 0.055 12.4 0.1 0.17 10.8 0.0 1.7 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Cytidylate_kin2 PF13189.6 ABA78808.1 - 0.055 13.6 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA_17 PF13207.6 ABA78808.1 - 0.069 13.6 0.0 0.58 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 ABA78808.1 - 0.084 12.1 0.0 0.098 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 ABA78808.1 - 0.085 13.3 0.1 0.28 11.6 0.0 1.9 2 1 0 2 2 2 0 RNA helicase ATPase_2 PF01637.18 ABA78808.1 - 0.091 12.7 0.0 0.58 10.0 0.0 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SKI PF01202.22 ABA78808.1 - 0.15 12.2 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Shikimate kinase DNA_pol3_delta2 PF13177.6 ABA78808.1 - 0.21 11.4 0.0 0.83 9.4 0.0 1.9 2 1 0 2 2 1 0 DNA polymerase III, delta subunit zf-dskA_traR PF01258.17 ABA78809.1 - 9.2e-11 41.5 0.1 2.1e-10 40.3 0.1 1.7 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DUF2093 PF09866.9 ABA78809.1 - 0.015 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2093) BssS PF13991.6 ABA78809.1 - 0.052 13.6 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 BssS protein family UreE_N PF02814.15 ABA78809.1 - 2.8 7.6 8.8 0.37 10.4 1.4 2.4 2 0 0 2 2 2 0 UreE urease accessory protein, N-terminal domain DUF1003 PF06210.11 ABA78809.1 - 8.3 6.6 6.7 2.4 8.3 0.4 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1003) FAD_binding_3 PF01494.19 ABA78810.1 - 3.4e-26 92.3 0.9 5.9e-26 91.5 0.9 1.4 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 ABA78810.1 - 7e-07 29.1 9.9 8.4e-05 22.3 4.4 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 ABA78810.1 - 2.3e-05 23.3 0.3 0.0081 14.9 1.7 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 ABA78810.1 - 6.5e-05 23.1 4.1 8.3e-05 22.7 1.5 2.5 1 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA78810.1 - 0.0001 21.6 0.4 0.0021 17.3 1.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA78810.1 - 0.00016 22.1 0.8 0.0025 18.3 1.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 ABA78810.1 - 0.001 18.0 0.4 0.18 10.6 2.3 2.3 2 0 0 2 2 2 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 ABA78810.1 - 0.0012 18.2 2.0 0.002 17.5 2.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 ABA78810.1 - 0.0043 17.0 1.2 0.0063 16.4 1.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 ABA78810.1 - 0.016 14.4 0.6 0.025 13.8 0.6 1.2 1 0 0 1 1 1 0 Thi4 family FAD_binding_2 PF00890.24 ABA78810.1 - 0.026 13.6 7.5 0.028 13.5 6.0 1.7 1 1 1 2 2 2 0 FAD binding domain NAD_Gly3P_dh_N PF01210.23 ABA78810.1 - 0.096 12.7 0.2 0.14 12.1 0.2 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.12 ABA78810.1 - 0.17 10.9 0.4 1.2 8.1 1.6 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 ABA78810.1 - 0.2 10.9 0.0 0.61 9.3 0.2 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 ABA78810.1 - 0.25 11.0 0.9 0.46 10.1 0.9 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 ABA78810.1 - 0.29 10.1 3.2 0.4 9.7 3.2 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A DFP PF04127.15 ABA78810.1 - 0.3 10.9 0.8 0.59 9.9 0.8 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Amino_oxidase PF01593.24 ABA78810.1 - 0.47 9.7 2.7 1.3 8.2 2.1 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase 4HBT PF03061.22 ABA78811.2 - 6.6e-13 48.8 0.9 1.4e-12 47.8 0.9 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 ABA78811.2 - 2.8e-05 24.3 0.1 3.4e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 ABA78811.2 - 0.0021 18.4 0.8 0.0029 17.9 0.7 1.3 1 1 0 1 1 1 1 Thioesterase-like superfamily Exo_endo_phos PF03372.23 ABA78812.1 - 1.4e-24 86.9 0.1 1.7e-24 86.6 0.1 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family HP_OMP PF01856.17 ABA78812.1 - 0.2 11.7 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Helicobacter outer membrane protein Fe-S_biosyn PF01521.20 ABA78813.1 - 4.4e-18 65.5 0.0 5.3e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis HD_assoc PF13286.6 ABA78814.1 - 5.7e-29 100.5 1.5 3.2e-28 98.1 0.4 2.6 3 0 0 3 3 3 1 Phosphohydrolase-associated domain HD PF01966.22 ABA78814.1 - 1e-15 58.0 0.2 2.1e-15 57.0 0.2 1.5 1 0 0 1 1 1 1 HD domain hemP PF10636.9 ABA78814.1 - 0.081 12.7 0.7 0.15 11.8 0.7 1.4 1 0 0 1 1 1 0 Hemin uptake protein hemP Virul_fac_BrkB PF03631.15 ABA78815.2 - 7.9e-62 209.2 29.1 9e-62 209.0 29.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Fe-ADH PF00465.19 ABA78816.1 - 5.7e-86 288.6 4.1 6.5e-86 288.4 4.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 ABA78816.1 - 4.6e-07 29.8 0.0 0.012 15.4 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase FGGY_N PF00370.21 ABA78817.1 - 1.1e-72 244.6 0.0 1.4e-72 244.2 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 ABA78817.1 - 3e-49 167.5 0.9 5.1e-49 166.7 0.9 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF2160 PF09928.9 ABA78819.1 - 1.3e-36 124.8 9.1 1.4e-36 124.7 9.1 1.0 1 0 0 1 1 1 1 Predicted small integral membrane protein (DUF2160) DUF2892 PF11127.8 ABA78819.1 - 6 7.0 10.9 0.43 10.6 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) BPD_transp_1 PF00528.22 ABA78820.1 - 3.7e-11 43.1 14.4 3.7e-11 43.1 14.4 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA78821.1 - 2.9e-19 69.5 16.2 3.6e-19 69.2 12.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM140 PF14985.6 ABA78821.1 - 0.0068 16.0 0.9 0.0068 16.0 0.9 2.2 2 0 0 2 2 2 1 TM140 protein family Alfin PF12165.8 ABA78821.1 - 0.098 12.3 0.2 0.25 11.0 0.2 1.7 1 0 0 1 1 1 0 Alfin ABC_tran PF00005.27 ABA78822.1 - 1.6e-19 70.7 0.0 2.3e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 ABA78822.1 - 1.7e-06 28.7 0.7 5.6e-06 27.1 0.7 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_16 PF13191.6 ABA78822.1 - 0.00031 21.2 0.0 0.00046 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 ABA78822.1 - 0.00043 20.2 0.0 0.0095 15.9 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase CysA_C_terminal PF17850.1 ABA78822.1 - 0.00084 19.9 0.1 0.023 15.3 0.1 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 ABA78822.1 - 0.00099 19.0 0.2 0.014 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA78822.1 - 0.0019 17.9 0.0 0.0036 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA78822.1 - 0.007 16.0 0.9 0.013 15.1 0.1 1.9 2 1 0 2 2 2 1 AAA domain TOBE_2 PF08402.10 ABA78822.1 - 0.023 14.8 0.1 0.071 13.3 0.1 1.9 1 0 0 1 1 1 0 TOBE domain AAA_28 PF13521.6 ABA78822.1 - 0.028 14.7 0.5 0.062 13.5 0.1 1.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 ABA78822.1 - 0.11 12.6 0.1 0.4 10.8 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 ABA78822.1 - 0.11 12.2 0.0 0.22 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA78822.1 - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 ABA78822.1 - 0.18 12.3 0.0 0.32 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 ABA78822.1 - 0.2 11.4 0.0 0.44 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA78822.1 - 0.24 12.0 0.7 2.3 8.8 0.7 2.2 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA78823.1 - 1.4e-23 83.9 0.0 1.9e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA78823.1 - 0.00021 21.4 0.0 0.00055 20.1 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 ABA78823.1 - 0.00059 19.7 0.0 0.088 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA78823.1 - 0.0028 17.1 0.0 0.0049 16.3 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain OB_MalK PF17912.1 ABA78823.1 - 0.024 15.4 0.0 0.085 13.7 0.0 2.0 1 0 0 1 1 1 0 MalK OB fold domain DAO PF01266.24 ABA78824.2 - 1.4e-51 176.1 2.1 1.4e-51 176.1 2.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO_C PF16901.5 ABA78824.2 - 1.3e-12 47.7 0.0 2.4e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase NAD_binding_8 PF13450.6 ABA78824.2 - 0.016 15.4 0.5 0.12 12.6 0.3 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 ABA78824.2 - 0.037 14.6 0.3 0.21 12.1 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA78824.2 - 0.041 13.2 1.4 6.3 6.0 1.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA78824.2 - 0.042 13.1 0.4 0.14 11.4 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 ABA78824.2 - 0.14 11.1 0.2 0.24 10.4 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein DUF962 PF06127.11 ABA78825.1 - 0.0055 16.8 0.2 0.0076 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF962) PQQ PF01011.21 ABA78827.1 - 4.5e-35 117.9 4.9 1.5e-05 24.7 0.1 8.6 8 0 0 8 8 8 6 PQQ enzyme repeat PQQ_2 PF13360.6 ABA78827.1 - 4.4e-20 72.3 0.7 2.8e-14 53.3 0.2 3.4 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 ABA78827.1 - 8.7e-10 38.8 26.0 0.28 11.7 0.4 8.1 7 1 0 7 7 7 5 PQQ-like domain PRC PF05239.16 ABA78828.2 - 1e-11 44.8 0.2 1.5e-11 44.2 0.2 1.3 1 0 0 1 1 1 1 PRC-barrel domain MSP1_C PF07462.11 ABA78828.2 - 3 6.5 5.3 3.4 6.3 5.3 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus BON PF04972.17 ABA78830.1 - 1.3e-19 70.2 0.5 1.8e-19 69.8 0.5 1.2 1 0 0 1 1 1 1 BON domain Response_reg PF00072.24 ABA78831.1 - 7.2e-09 35.8 0.1 8.5e-09 35.6 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DNA_photolyase PF00875.18 ABA78831.1 - 0.082 12.9 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 DNA photolyase MgtC PF02308.16 ABA78832.1 - 1.1e-35 122.6 13.6 1.5e-35 122.2 13.6 1.1 1 0 0 1 1 1 1 MgtC family LigD_N PF13298.6 ABA78834.1 - 1.3e-38 131.4 0.0 2.3e-38 130.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DNA_ligase_A_M PF01068.21 ABA78834.1 - 1.8e-23 83.2 0.0 5.4e-23 81.7 0.0 1.7 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.15 ABA78834.1 - 3.2e-20 72.6 0.0 1.1e-19 70.9 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_primase_S PF01896.19 ABA78834.1 - 2.8e-07 30.8 0.0 4.5e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 DNA primase small subunit Sigma70_r2 PF04542.14 ABA78836.2 - 1.4e-17 63.2 0.5 2.5e-17 62.4 0.5 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 ABA78836.2 - 1.5e-16 59.7 0.2 2.9e-16 58.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA78836.2 - 3.7e-05 23.2 0.8 7.6e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 ABA78836.2 - 0.037 13.6 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Acyl_transf_1 PF00698.21 ABA78837.1 - 6.1e-34 118.0 8.8 7e-34 117.8 8.8 1.0 1 0 0 1 1 1 1 Acyl transferase domain Peptidase_M22 PF00814.25 ABA78837.1 - 0.0058 16.4 0.1 0.01 15.6 0.1 1.4 1 1 0 1 1 1 1 Glycoprotease family NolB PF17398.2 ABA78837.1 - 0.017 15.5 5.0 0.019 15.3 0.5 2.3 1 1 0 2 2 2 0 Nodulation protein NolB DUF1289 PF06945.13 ABA78838.1 - 1.1e-20 73.1 1.2 1.6e-20 72.6 1.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1289) RuvX PF03652.15 ABA78839.1 - 1.3e-41 142.1 0.0 1.5e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 Holliday junction resolvase TPR_19 PF14559.6 ABA78840.2 - 0.0023 18.4 0.0 0.0023 18.4 0.0 4.5 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_2 PF07719.17 ABA78840.2 - 0.0067 16.5 8.4 31 5.0 0.1 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_20 PF14561.6 ABA78840.2 - 0.0097 16.2 7.6 0.21 12.0 2.3 3.7 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 ABA78840.2 - 0.011 16.1 1.3 0.12 12.8 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.20 ABA78840.2 - 0.12 12.6 0.0 16 6.0 0.0 2.8 2 0 0 2 2 2 0 PPR repeat TPR_6 PF13174.6 ABA78840.2 - 0.73 10.6 9.1 7.6 7.4 0.0 4.4 6 0 0 6 6 6 0 Tetratricopeptide repeat Arg_decarbox_C PF17944.1 ABA78840.2 - 2 9.0 4.6 28 5.4 0.1 3.5 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension DAO PF01266.24 ABA78841.1 - 3.3e-57 194.7 1.7 3.9e-57 194.4 1.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 ABA78841.1 - 1.8e-06 27.4 0.0 4e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 ABA78841.1 - 3.7e-05 23.9 0.2 0.00012 22.3 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 ABA78841.1 - 0.00034 20.0 0.9 0.043 13.1 1.6 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA78841.1 - 0.00082 18.8 1.4 0.0037 16.7 1.2 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 ABA78841.1 - 0.0056 15.8 3.9 0.059 12.4 3.9 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 ABA78841.1 - 0.033 13.4 0.2 0.14 11.4 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CheF-arch PF04283.12 ABA78841.1 - 0.13 12.0 1.0 0.61 9.8 0.5 2.0 1 1 1 2 2 2 0 Chemotaxis signal transduction system protein F from archaea Trp_halogenase PF04820.14 ABA78841.1 - 0.7 8.7 6.5 0.79 8.5 0.7 2.5 2 1 1 3 3 3 0 Tryptophan halogenase Imm2 PF14426.6 ABA78842.1 - 0.18 11.9 0.0 0.47 10.5 0.0 1.7 2 0 0 2 2 2 0 Immunity protein Imm2 SoxD PF04267.12 ABA78843.1 - 1.9e-25 88.8 0.2 2.4e-25 88.4 0.2 1.1 1 0 0 1 1 1 1 Sarcosine oxidase, delta subunit family GCV_T PF01571.21 ABA78844.2 - 2.7e-68 230.1 0.0 3.9e-68 229.6 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain SO_alpha_A3 PF17806.1 ABA78844.2 - 5.5e-32 110.0 0.0 1.3e-31 108.7 0.0 1.6 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_4 PF13510.6 ABA78844.2 - 1.4e-24 86.0 0.0 7e-24 83.7 0.0 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain GCV_T_C PF08669.11 ABA78844.2 - 2.9e-15 55.9 0.0 8.3e-15 54.5 0.0 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_2 PF07992.14 ABA78844.2 - 6.4e-11 42.0 0.2 9.8e-11 41.4 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA78844.2 - 1.6e-09 37.6 0.9 6e-09 35.7 0.6 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA78844.2 - 4.3e-07 30.1 0.1 1.2e-06 28.6 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 ABA78844.2 - 8.3e-07 28.4 5.8 1.6e-06 27.5 0.4 3.0 3 1 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 ABA78844.2 - 7.6e-06 26.4 0.1 0.24 12.0 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 ABA78844.2 - 5e-05 23.1 1.8 0.0017 18.0 0.2 2.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 ABA78844.2 - 0.0001 21.2 0.2 0.00017 20.5 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 ABA78844.2 - 0.00012 21.5 0.2 0.42 9.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 ABA78844.2 - 0.00095 18.3 0.2 0.0015 17.7 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 ABA78844.2 - 0.0025 17.1 0.1 0.0054 16.1 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 ABA78844.2 - 0.015 14.6 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Thi4 family SoxG PF04268.12 ABA78844.2 - 0.051 13.7 0.0 0.25 11.5 0.0 2.2 3 0 0 3 3 3 0 Sarcosine oxidase, gamma subunit family Lycopene_cycl PF05834.12 ABA78844.2 - 0.13 11.3 0.2 0.28 10.2 0.2 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein SoxG PF04268.12 ABA78845.1 - 1.8e-19 70.3 0.1 2.2e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family GCV_T PF01571.21 ABA78845.1 - 3e-05 23.5 0.0 4.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DUF4123 PF13503.6 ABA78845.1 - 0.018 15.5 0.1 1.6 9.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4123) Acyl_transf_3 PF01757.22 ABA78846.2 - 3.2e-27 95.5 31.3 3.2e-27 95.5 31.3 1.7 2 0 0 2 2 2 1 Acyltransferase family Sod_Fe_C PF02777.18 ABA78847.1 - 2.1e-35 121.0 0.0 3.5e-35 120.2 0.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 ABA78847.1 - 1.7e-26 92.5 1.3 3e-26 91.7 1.3 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Lysine_decarbox PF03641.14 ABA78848.1 - 9.7e-37 126.0 0.1 1.1e-36 125.8 0.1 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 ABA78848.1 - 1.8e-18 66.6 0.0 2.5e-18 66.1 0.0 1.2 1 1 0 1 1 1 1 SLOG cluster4 family TetR_C_29 PF17938.1 ABA78848.1 - 0.11 12.6 0.0 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Big_6 PF17936.1 ABA78849.1 - 2.2e-07 31.1 0.0 0.00064 19.9 0.0 2.7 2 0 0 2 2 2 2 Bacterial Ig domain LysM PF01476.20 ABA78849.1 - 6.9e-06 26.0 0.0 1.3e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 LysM domain Plug PF07715.15 ABA78849.1 - 0.035 14.7 0.0 0.099 13.2 0.0 1.7 1 0 0 1 1 1 0 TonB-dependent Receptor Plug Domain ABC_membrane PF00664.23 ABA78850.1 - 1.1e-37 130.2 9.0 1.4e-37 129.9 9.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 ABA78850.1 - 7.7e-34 117.1 0.1 2.2e-33 115.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 ABA78850.1 - 1.9e-08 34.0 0.0 7.2e-06 25.6 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 ABA78850.1 - 0.001 19.5 0.0 0.026 14.9 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA78850.1 - 0.0024 18.3 0.2 0.0071 16.7 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA78850.1 - 0.0044 16.7 0.4 0.011 15.4 0.4 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain HemY_N PF07219.13 ABA78850.1 - 0.0077 16.4 0.9 0.039 14.1 0.9 2.3 1 0 0 1 1 1 1 HemY protein N-terminus AAA_22 PF13401.6 ABA78850.1 - 0.0086 16.4 0.0 0.031 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 ABA78850.1 - 0.014 14.7 0.2 0.048 12.9 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_21 PF13304.6 ABA78850.1 - 0.038 13.8 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 ABA78850.1 - 0.039 13.7 0.0 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 ABA78850.1 - 0.055 13.6 0.0 0.27 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 ABA78850.1 - 0.069 12.9 0.1 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase AAA_18 PF13238.6 ABA78850.1 - 0.078 13.5 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain SecD-TM1 PF13721.6 ABA78850.1 - 0.081 13.4 0.1 0.25 11.8 0.1 1.8 1 0 0 1 1 1 0 SecD export protein N-terminal TM region RsgA_GTPase PF03193.16 ABA78850.1 - 0.085 12.8 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase APS_kinase PF01583.20 ABA78850.1 - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 ABA78850.1 - 0.14 12.2 0.2 1.1 9.3 0.0 2.5 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) ABC_membrane_3 PF13748.6 ABA78850.1 - 0.21 10.8 5.4 0.31 10.2 0.4 2.2 2 0 0 2 2 2 0 ABC transporter transmembrane region TPR_21 PF09976.9 ABA78851.1 - 0.00044 20.0 9.1 0.0067 16.2 4.8 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat-like domain UPF0147 PF03685.13 ABA78851.1 - 0.12 12.4 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) PQQ_2 PF13360.6 ABA78852.1 - 2.2e-55 187.8 10.8 1.6e-47 162.1 7.2 3.1 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 ABA78852.1 - 2.3e-41 139.2 31.7 1.3e-07 31.9 1.1 8.8 8 1 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 ABA78852.1 - 8.4e-21 72.9 5.6 0.00026 20.8 0.0 7.7 8 0 0 8 8 8 4 PQQ enzyme repeat MMR_HSR1 PF01926.23 ABA78853.1 - 1.1e-46 157.6 0.1 2e-23 82.6 0.0 2.4 2 0 0 2 2 2 2 50S ribosome-binding GTPase KH_dom-like PF14714.6 ABA78853.1 - 2.7e-32 110.9 0.0 8.1e-32 109.4 0.0 1.8 2 0 0 2 2 2 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FeoB_N PF02421.18 ABA78853.1 - 6.5e-24 84.2 0.0 3.3e-11 43.0 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 ABA78853.1 - 2.7e-16 59.7 0.5 7e-07 29.0 0.1 4.9 2 2 0 3 3 3 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 ABA78853.1 - 5.2e-15 55.9 0.0 1.4e-06 28.4 0.0 3.3 3 0 0 3 3 3 3 Dynamin family AIG1 PF04548.16 ABA78853.1 - 4e-12 45.9 0.0 1.3e-06 27.9 0.0 2.6 2 1 1 3 3 3 2 AIG1 family RsgA_GTPase PF03193.16 ABA78853.1 - 7.6e-10 38.9 0.0 0.14 12.1 0.0 3.5 3 0 0 3 3 3 3 RsgA GTPase Roc PF08477.13 ABA78853.1 - 2.8e-07 30.8 0.0 0.057 13.6 0.0 3.5 3 1 0 3 3 3 2 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 ABA78853.1 - 3.2e-07 30.1 0.0 0.045 13.4 0.0 3.0 2 1 0 2 2 2 2 Ras family MeaB PF03308.16 ABA78853.1 - 7.8e-07 28.3 0.8 0.052 12.5 0.0 3.8 4 0 0 4 4 4 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 ABA78853.1 - 2.4e-06 27.1 0.0 0.0051 16.3 0.0 3.1 2 1 0 2 2 2 1 ADP-ribosylation factor family ABC_tran PF00005.27 ABA78853.1 - 2.6e-05 24.8 0.0 0.083 13.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 ABA78853.1 - 3e-05 23.9 0.0 0.15 11.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain Septin PF00735.18 ABA78853.1 - 0.00024 20.5 0.0 0.053 12.8 0.0 2.6 2 1 0 2 2 2 1 Septin AAA_22 PF13401.6 ABA78853.1 - 0.00098 19.4 0.1 1.4 9.1 0.0 3.0 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.15 ABA78853.1 - 0.0019 18.1 0.0 2.6 7.9 0.0 2.5 2 0 0 2 2 2 2 NTPase TniB PF05621.11 ABA78853.1 - 0.0046 16.4 0.0 2.7 7.4 0.0 2.9 3 0 0 3 3 3 1 Bacterial TniB protein AAA_29 PF13555.6 ABA78853.1 - 0.0097 15.6 0.0 2.8 7.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain cobW PF02492.19 ABA78853.1 - 0.013 15.1 0.6 6.5 6.3 0.0 3.3 3 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 ABA78853.1 - 0.018 15.4 0.0 9.4 6.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MobB PF03205.14 ABA78853.1 - 0.021 14.7 0.3 9.5 6.1 0.0 2.7 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 ABA78853.1 - 0.027 14.3 0.0 6.4 6.5 0.0 3.6 4 0 0 4 4 4 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 ABA78853.1 - 0.036 13.2 0.0 5.8 6.0 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 ABA78853.1 - 0.043 13.7 0.0 12 5.7 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea PduV-EutP PF10662.9 ABA78853.1 - 0.043 13.6 0.0 30 4.3 0.0 3.5 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 ABA78853.1 - 0.047 14.2 0.0 9.9 6.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 ABA78853.1 - 0.065 13.5 0.2 34 4.6 0.0 3.6 2 1 1 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 ABA78853.1 - 0.075 12.4 0.0 2.7 7.3 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family MnmE_helical PF12631.7 ABA78853.1 - 0.09 12.9 0.0 0.33 11.1 0.0 1.9 1 1 0 1 1 1 0 MnmE helical domain SRPRB PF09439.10 ABA78853.1 - 0.1 12.0 0.0 2.6 7.4 0.0 2.5 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit AAA_33 PF13671.6 ABA78853.1 - 0.14 12.3 0.0 11 6.2 0.0 2.8 3 0 0 3 3 2 0 AAA domain MMR_HSR1_Xtn PF16897.5 ABA78853.1 - 0.17 11.9 0.0 0.6 10.1 0.0 1.8 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain ABC_tran PF00005.27 ABA78854.1 - 4.1e-57 192.5 0.0 4.4e-28 98.5 0.0 2.1 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 ABA78854.1 - 2.4e-34 117.6 3.7 9.8e-17 61.2 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA78854.1 - 3.1e-11 43.6 2.3 0.0019 18.1 0.1 3.9 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA78854.1 - 2.3e-07 31.2 5.1 0.0052 17.1 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 ABA78854.1 - 7e-07 29.8 8.7 3.9e-05 24.1 0.5 2.9 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 ABA78854.1 - 7.6e-07 28.8 0.0 0.035 13.5 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA78854.1 - 2e-06 27.4 0.9 0.032 14.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA78854.1 - 1.1e-05 25.4 0.3 0.0044 16.9 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA PF00004.29 ABA78854.1 - 0.00011 22.7 0.1 0.12 12.9 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 ABA78854.1 - 0.00035 20.5 1.0 0.1 12.5 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 ABA78854.1 - 0.00062 20.0 0.1 0.4 10.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 ABA78854.1 - 0.0029 17.0 0.4 1 8.8 0.0 2.9 3 0 0 3 3 3 1 Bacterial TniB protein MMR_HSR1 PF01926.23 ABA78854.1 - 0.0037 17.3 0.1 0.2 11.7 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase PRK PF00485.18 ABA78854.1 - 0.0037 17.0 1.9 1.5 8.5 0.3 2.2 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 ABA78854.1 - 0.0038 16.8 10.7 1.2 8.7 4.2 3.7 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 ABA78854.1 - 0.0044 16.8 0.3 1.6 8.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 ABA78854.1 - 0.0044 16.2 0.9 0.71 9.0 0.1 2.1 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activat PF00158.26 ABA78854.1 - 0.0064 16.2 1.9 0.14 11.9 0.1 2.6 3 0 0 3 3 2 1 Sigma-54 interaction domain RNA_helicase PF00910.22 ABA78854.1 - 0.0065 16.9 0.6 0.72 10.3 0.0 2.3 2 0 0 2 2 2 1 RNA helicase IstB_IS21 PF01695.17 ABA78854.1 - 0.0075 16.0 0.9 0.29 10.8 0.1 2.9 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_18 PF13238.6 ABA78854.1 - 0.013 16.1 0.3 1.2 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 ABA78854.1 - 0.015 15.2 0.2 5.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 ABA78854.1 - 0.015 14.6 0.9 3.7 6.8 0.2 2.3 2 0 0 2 2 2 0 Zeta toxin DUF87 PF01935.17 ABA78854.1 - 0.017 15.3 2.8 0.63 10.1 0.1 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_23 PF13476.6 ABA78854.1 - 0.019 15.5 0.2 1.7 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 ABA78854.1 - 0.032 13.9 0.1 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 ABA78854.1 - 0.085 11.5 0.0 3.6 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA78854.1 - 0.13 11.6 1.1 1.4 8.3 0.1 2.5 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 ABA78854.1 - 0.14 12.1 0.1 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase PF06745.13 ABA78854.1 - 0.15 11.4 0.5 3.9 6.7 0.0 2.2 2 0 0 2 2 2 0 KaiC MeaB PF03308.16 ABA78854.1 - 0.16 11.0 3.5 0.46 9.4 0.4 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 ABA78854.1 - 0.19 11.8 2.4 4.2 7.5 0.4 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Roc PF08477.13 ABA78854.1 - 0.21 11.8 0.0 3.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_5 PF07728.14 ABA78854.1 - 0.28 11.2 4.3 1 9.3 0.1 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) TsaE PF02367.17 ABA78854.1 - 0.34 10.9 1.2 14 5.7 0.1 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 ABA78854.1 - 0.44 10.8 2.0 5.4 7.3 0.2 3.1 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 ABA78855.1 - 1.8e-13 50.6 25.4 6.9e-13 48.7 15.8 3.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA78855.1 - 0.012 15.6 0.1 0.012 15.6 0.1 3.3 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 ABA78856.1 - 1.6e-30 106.2 10.9 1.6e-30 106.2 10.9 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component IPPT PF01715.17 ABA78858.2 - 6.2e-57 193.0 0.0 7.4e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 IPP transferase AAA_33 PF13671.6 ABA78858.2 - 8.1e-05 22.8 0.1 0.00065 19.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain IPT PF01745.16 ABA78858.2 - 0.00041 19.8 0.0 0.00066 19.1 0.0 1.2 1 0 0 1 1 1 1 Isopentenyl transferase AAA_16 PF13191.6 ABA78858.2 - 0.022 15.1 0.4 0.052 13.9 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain CobU PF02283.16 ABA78858.2 - 0.03 13.9 0.1 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Polyoma_lg_T_C PF06431.11 ABA78858.2 - 0.18 10.6 0.0 0.25 10.2 0.0 1.1 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus Zeta_toxin PF06414.12 ABA78858.2 - 0.21 10.8 0.0 0.37 10.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AA_kinase PF00696.28 ABA78859.1 - 3.2e-26 92.4 0.0 3.8e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family PyocinActivator PF11112.8 ABA78859.1 - 0.17 12.0 0.0 5.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Pyocin activator protein PrtN RRF PF01765.19 ABA78860.1 - 1.3e-58 197.5 0.2 1.5e-58 197.3 0.2 1.0 1 0 0 1 1 1 1 Ribosome recycling factor 14-3-3 PF00244.20 ABA78860.1 - 0.0097 15.4 0.6 0.013 15.0 0.6 1.1 1 0 0 1 1 1 1 14-3-3 protein Tox-MPTase2 PF15638.6 ABA78860.1 - 0.065 13.0 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Metallopeptidase toxin 2 Prenyltransf PF01255.19 ABA78861.1 - 2.1e-74 249.8 0.0 2.4e-74 249.6 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF982 PF06169.12 ABA78861.1 - 0.099 12.7 1.4 0.24 11.5 1.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF982) CTP_transf_1 PF01148.20 ABA78862.1 - 1.1e-51 176.2 15.4 1.3e-51 175.9 15.4 1.1 1 0 0 1 1 1 1 Cytidylyltransferase family DUF92 PF01940.16 ABA78862.1 - 0.019 14.4 1.8 0.019 14.4 1.8 2.7 3 1 0 3 3 3 0 Integral membrane protein DUF92 DUF2079 PF09852.9 ABA78862.1 - 0.64 8.8 5.5 0.91 8.3 5.5 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2079) DXP_redisom_C PF08436.12 ABA78863.1 - 3.2e-35 120.1 0.0 7.1e-35 119.0 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DXP_reductoisom PF02670.16 ABA78863.1 - 2.8e-33 115.4 0.3 6.8e-33 114.1 0.3 1.7 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXPR_C PF13288.6 ABA78863.1 - 3.5e-32 111.1 0.0 5.7e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 DXP reductoisomerase C-terminal domain Peptidase_M50 PF02163.22 ABA78864.1 - 1e-66 224.8 0.0 1.2e-66 224.5 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 ABA78864.1 - 1.7e-14 53.4 0.2 3.8e-09 36.3 0.2 2.4 2 0 0 2 2 2 2 PDZ domain PDZ_2 PF13180.6 ABA78864.1 - 1e-13 51.4 0.0 7e-07 29.5 0.0 2.3 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 ABA78864.1 - 5.4e-11 42.7 0.0 2.7e-05 24.4 0.0 2.3 2 0 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 ABA78864.1 - 0.00057 19.8 0.0 0.57 10.2 0.0 2.5 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ_1 PF12812.7 ABA78864.1 - 0.0025 17.8 0.0 0.018 15.1 0.0 2.3 2 0 0 2 2 2 1 PDZ-like domain FA_desaturase PF00487.24 ABA78864.1 - 3.2 7.5 7.3 13 5.5 0.0 2.8 2 1 1 3 3 3 0 Fatty acid desaturase Bac_surface_Ag PF01103.23 ABA78866.1 - 4e-64 217.2 5.6 5.9e-64 216.6 5.6 1.3 1 0 0 1 1 1 1 Surface antigen POTRA PF07244.15 ABA78866.1 - 1.9e-50 169.3 18.6 7.4e-13 48.9 0.1 6.0 7 0 0 7 7 7 5 Surface antigen variable number repeat POTRA_2 PF08479.11 ABA78866.1 - 0.00021 21.1 0.8 0.21 11.5 0.0 4.1 5 0 0 5 5 5 1 POTRA domain, ShlB-type POTRA_1 PF08478.10 ABA78866.1 - 0.00029 21.1 0.3 2.6 8.4 0.0 4.0 4 0 0 4 4 4 2 POTRA domain, FtsQ-type RFXA_RFXANK_bdg PF15289.6 ABA78866.1 - 0.11 12.8 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Regulatory factor X-associated C-terminal binding domain OmpH PF03938.14 ABA78867.1 - 3.6e-15 56.5 4.0 4.3e-15 56.3 4.0 1.1 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Totivirus_coat PF05518.11 ABA78867.1 - 0.11 10.5 4.4 0.12 10.5 4.4 1.2 1 0 0 1 1 1 0 Totivirus coat protein FabA PF07977.13 ABA78868.1 - 8e-32 109.7 0.0 9.6e-32 109.5 0.0 1.1 1 0 0 1 1 1 1 FabA-like domain 4HBT PF03061.22 ABA78868.1 - 0.0046 17.3 0.1 0.0095 16.3 0.1 1.5 1 1 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 ABA78868.1 - 0.022 14.4 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 MaoC like domain Hexapep PF00132.24 ABA78869.2 - 1.7e-26 90.9 18.3 3.1e-10 39.4 3.0 5.7 5 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Acetyltransf_11 PF13720.6 ABA78869.2 - 4.2e-18 65.6 0.0 5.9e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep_2 PF14602.6 ABA78869.2 - 1.1e-08 34.7 13.4 0.00019 21.1 0.7 4.8 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase LpxI_C PF06230.11 ABA78870.1 - 3.8e-40 136.8 0.0 5.4e-40 136.3 0.0 1.2 1 0 0 1 1 1 1 LpxI C-terminal domain LpxI_N PF17930.1 ABA78870.1 - 1.2e-28 99.6 0.0 1.7e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 LpxI N-terminal domain Acyl-CoA_dh_N PF02771.16 ABA78870.1 - 0.075 13.7 1.2 7.2 7.3 0.1 2.3 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain LpxB PF02684.15 ABA78871.1 - 7.8e-90 301.4 0.0 9.4e-90 301.1 0.0 1.0 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase ABC_tran PF00005.27 ABA78872.1 - 3.1e-49 167.0 0.0 3.1e-24 86.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA78872.1 - 7.6e-20 71.9 4.5 0.00066 19.6 0.0 4.3 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_CTD PF16326.5 ABA78872.1 - 1.8e-14 53.7 3.4 1.8e-14 53.7 3.4 2.0 2 0 0 2 2 1 1 ABC transporter C-terminal domain SMC_N PF02463.19 ABA78872.1 - 6.3e-11 42.1 0.1 0.087 12.2 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA78872.1 - 1.1e-08 34.6 0.0 0.00027 20.6 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA78872.1 - 5.2e-07 29.7 0.1 0.0019 18.1 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1 PF01926.23 ABA78872.1 - 7e-07 29.3 0.1 0.029 14.5 0.0 2.6 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_30 PF13604.6 ABA78872.1 - 1.4e-06 28.2 0.2 0.035 13.8 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 ABA78872.1 - 2.4e-06 28.0 5.9 0.00053 20.4 0.3 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 ABA78872.1 - 2.8e-06 28.0 0.6 0.088 13.3 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_15 PF13175.6 ABA78872.1 - 7.5e-06 25.9 0.0 0.086 12.5 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 ABA78872.1 - 2.5e-05 24.2 0.4 0.36 10.7 0.0 2.9 2 1 0 2 2 2 2 NACHT domain Roc PF08477.13 ABA78872.1 - 5.8e-05 23.3 0.0 0.021 15.0 0.0 2.4 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 ABA78872.1 - 9.4e-05 22.6 0.7 0.2 11.8 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_7 PF12775.7 ABA78872.1 - 0.00021 20.9 0.0 0.26 10.8 0.0 2.2 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA PF00004.29 ABA78872.1 - 0.00048 20.6 0.2 0.058 13.8 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 ABA78872.1 - 0.00071 19.4 0.1 0.094 12.5 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain SbcCD_C PF13558.6 ABA78872.1 - 0.0014 18.8 0.6 3.6 7.9 0.0 3.5 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 ABA78872.1 - 0.0015 18.8 6.9 1.2 9.5 1.5 3.8 2 2 0 2 2 2 2 AAA domain AAA_24 PF13479.6 ABA78872.1 - 0.0016 18.2 0.0 1.1 9.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 ABA78872.1 - 0.0016 18.1 0.2 0.79 9.3 0.1 2.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 ABA78872.1 - 0.0017 18.0 2.2 2.1 7.9 0.0 3.7 5 0 0 5 5 3 1 AAA domain RNA_helicase PF00910.22 ABA78872.1 - 0.0018 18.7 0.0 0.82 10.1 0.0 2.4 2 0 0 2 2 2 1 RNA helicase NB-ARC PF00931.22 ABA78872.1 - 0.0024 17.1 0.2 1.5 7.9 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_5 PF07728.14 ABA78872.1 - 0.0025 17.8 0.3 2.6 8.1 0.1 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 ABA78872.1 - 0.0027 18.2 0.5 0.47 11.0 0.0 3.0 3 0 0 3 3 2 1 AAA domain TsaE PF02367.17 ABA78872.1 - 0.0034 17.4 0.3 1.7 8.6 0.0 2.9 2 1 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 ABA78872.1 - 0.0051 16.6 0.1 1.7 8.4 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ABC_tran_Xtn PF12848.7 ABA78872.1 - 0.0081 16.2 2.0 0.22 11.5 3.1 2.6 2 0 0 2 2 2 1 ABC transporter FeoB_N PF02421.18 ABA78872.1 - 0.013 15.1 0.1 2.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B NTPase_1 PF03266.15 ABA78872.1 - 0.013 15.4 1.3 3.6 7.5 0.1 2.8 3 0 0 3 3 2 0 NTPase MobB PF03205.14 ABA78872.1 - 0.014 15.3 0.0 1.6 8.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 ABA78872.1 - 0.021 15.1 8.8 0.23 11.7 0.0 3.6 4 1 0 4 4 2 0 AAA domain Zeta_toxin PF06414.12 ABA78872.1 - 0.022 14.1 0.0 5.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.19 ABA78872.1 - 0.024 14.2 0.1 4.7 6.8 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 ABA78872.1 - 0.038 13.4 0.0 7.8 5.8 0.0 2.6 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 ABA78872.1 - 0.044 13.8 0.0 5.7 7.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.6 ABA78872.1 - 0.072 11.7 0.0 8.3 4.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 ABA78872.1 - 0.075 12.5 0.1 5.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein DUF87 PF01935.17 ABA78872.1 - 0.084 13.0 0.0 2.4 8.2 0.0 2.6 2 0 0 2 2 2 0 Helicase HerA, central domain Rad17 PF03215.15 ABA78872.1 - 0.098 12.6 0.0 4 7.3 0.0 2.4 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 ABA78872.1 - 0.1 12.5 0.0 18 5.1 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MeaB PF03308.16 ABA78872.1 - 0.11 11.5 1.2 8.3 5.3 0.2 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 ABA78872.1 - 0.11 11.5 0.0 7.6 5.5 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Dynamin_N PF00350.23 ABA78872.1 - 0.11 12.5 0.0 8.2 6.4 0.0 2.6 2 0 0 2 2 2 0 Dynamin family KAP_NTPase PF07693.14 ABA78872.1 - 0.12 11.5 0.0 1.7 7.8 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain FtsK_SpoIIIE PF01580.18 ABA78872.1 - 0.17 11.2 2.2 0.81 9.0 0.0 2.9 4 0 0 4 4 3 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.17 ABA78872.1 - 0.18 11.6 0.4 15 5.3 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF3584 PF12128.8 ABA78872.1 - 0.23 8.9 8.0 1 6.8 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) Ras PF00071.22 ABA78872.1 - 0.25 10.9 0.1 5 6.7 0.0 2.3 2 0 0 2 2 2 0 Ras family G-alpha PF00503.20 ABA78872.1 - 0.27 10.4 0.0 1.2 8.2 0.0 1.8 2 0 0 2 2 2 0 G-protein alpha subunit OMP_b-brl PF13505.6 ABA78873.1 - 1.7e-20 73.9 7.6 2.3e-20 73.4 7.6 1.2 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain Autotransporter PF03797.19 ABA78873.1 - 4.2e-06 26.6 12.6 5.2e-05 23.0 0.3 2.4 2 1 0 2 2 2 2 Autotransporter beta-domain DUF3575 PF12099.8 ABA78873.1 - 0.21 10.9 4.2 3.5 6.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3575) HTH_AsnC-type PF13404.6 ABA78874.1 - 9e-15 54.2 0.2 1.6e-14 53.4 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 ABA78874.1 - 1.1e-13 50.9 0.0 1.6e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 ABA78874.1 - 2.2e-13 49.5 0.1 3.7e-13 48.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 ABA78874.1 - 0.00014 21.6 0.3 0.00052 19.8 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 ABA78874.1 - 0.00041 20.2 0.5 0.001 18.9 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 ABA78874.1 - 0.00093 18.6 0.0 0.0027 17.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 ABA78874.1 - 0.0011 19.4 0.2 0.013 16.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 ABA78874.1 - 0.0047 16.8 0.1 0.014 15.4 0.0 1.7 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.16 ABA78874.1 - 0.033 14.0 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.19 ABA78874.1 - 0.034 14.0 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 ABA78874.1 - 0.071 13.1 0.6 0.95 9.5 0.1 2.3 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 ABA78874.1 - 0.078 12.6 0.3 0.61 9.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family LysE PF01810.18 ABA78875.1 - 1.3e-24 86.7 18.1 1.7e-24 86.4 18.1 1.0 1 0 0 1 1 1 1 LysE type translocator YjbR PF04237.13 ABA78876.2 - 6.3e-19 68.3 0.0 8.3e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 YjbR tRNA-synt_1e PF01406.19 ABA78877.1 - 4.9e-105 351.2 0.0 6e-105 350.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 ABA78877.1 - 0.00012 20.5 0.0 0.00025 19.5 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 ABA78877.1 - 0.00018 20.4 0.0 0.03 13.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 ABA78877.1 - 0.0043 17.5 0.3 0.014 15.8 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 ABA78877.1 - 0.039 12.9 0.0 0.13 11.1 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) HMGL-like PF00682.19 ABA78878.2 - 4.6e-48 164.1 0.1 6.5e-48 163.6 0.1 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 ABA78878.2 - 3.4e-21 75.5 0.0 6.5e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Methyltransf_25 PF13649.6 ABA78879.1 - 1.8e-10 41.3 0.1 2.9e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA78879.1 - 4.9e-08 33.5 0.0 7.8e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA78879.1 - 3.7e-07 30.8 0.0 5.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA78879.1 - 8.2e-07 29.0 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA78879.1 - 0.00022 21.0 0.0 0.00032 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 ABA78879.1 - 0.00029 21.8 0.1 0.00075 20.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_2 PF00891.18 ABA78879.1 - 0.0017 17.7 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain FtsJ PF01728.19 ABA78879.1 - 0.0057 16.8 0.0 0.0085 16.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_33 PF10017.9 ABA78879.1 - 0.097 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent SQS_PSY PF00494.19 ABA78880.1 - 7.4e-23 81.4 1.7 7.4e-23 81.4 1.7 1.7 1 1 1 2 2 2 1 Squalene/phytoene synthase MFS_1 PF07690.16 ABA78881.1 - 3.4e-18 65.7 60.3 9.5e-10 37.9 32.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA78881.1 - 0.24 10.2 35.9 0.043 12.7 15.0 2.6 2 1 0 2 2 2 0 Sugar (and other) transporter HhH-GPD PF00730.25 ABA78882.1 - 6.8e-12 45.8 0.0 9e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 ABA78882.1 - 0.082 12.8 0.0 0.24 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Abhydrolase_2 PF02230.16 ABA78883.1 - 4.6e-36 124.7 0.0 5.5e-36 124.4 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 ABA78883.1 - 1e-10 41.6 0.0 1.4e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 ABA78883.1 - 1.1e-08 35.1 0.0 1.8e-06 27.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA78883.1 - 2.7e-08 33.4 0.6 0.00024 20.5 0.0 2.8 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 ABA78883.1 - 2.9e-07 31.3 15.7 5.6e-06 27.1 10.2 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 ABA78883.1 - 1.2e-06 28.2 0.0 2.8e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family FSH1 PF03959.13 ABA78883.1 - 1.9e-05 24.4 0.0 5.1e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) BAAT_C PF08840.11 ABA78883.1 - 0.0012 18.8 0.0 0.024 14.6 0.0 2.0 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_4 PF08386.10 ABA78883.1 - 0.0014 18.7 0.0 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_3 PF07859.13 ABA78883.1 - 0.015 15.2 0.2 0.48 10.3 0.1 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold LIP PF03583.14 ABA78883.1 - 0.027 13.8 0.0 0.087 12.1 0.0 1.7 1 1 1 2 2 2 0 Secretory lipase Abhydrolase_8 PF06259.12 ABA78883.1 - 0.044 13.4 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase HNH_5 PF14279.6 ABA78884.1 - 9.6e-14 51.0 0.1 1.4e-13 50.4 0.1 1.3 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 ABA78884.1 - 7.9e-12 45.2 0.0 1.1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 ABA78884.1 - 0.00012 21.9 0.0 0.00027 20.8 0.0 1.6 1 1 0 1 1 1 1 HNH endonuclease HTH_20 PF12840.7 ABA78885.1 - 1.4e-12 47.4 1.0 1.4e-12 47.4 1.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 ABA78885.1 - 2.3e-08 33.7 0.0 3.4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 ABA78885.1 - 0.00025 20.9 1.3 0.00035 20.4 1.3 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 ABA78885.1 - 0.0015 18.7 0.0 0.0021 18.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 ABA78885.1 - 0.0044 17.0 0.2 0.06 13.3 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 ABA78885.1 - 0.0052 16.3 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 ABA78885.1 - 0.012 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family DprA_WH PF17782.1 ABA78885.1 - 0.036 14.2 1.5 0.064 13.4 1.1 1.6 2 0 0 2 2 2 0 DprA winged helix domain HTH_IclR PF09339.10 ABA78885.1 - 0.038 13.8 0.8 0.062 13.1 0.7 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 ABA78885.1 - 0.1 13.0 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator FMN_red PF03358.15 ABA78886.1 - 2.1e-24 86.1 0.0 2.8e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase MFS_1 PF07690.16 ABA78887.1 - 1.1e-17 64.0 63.5 7.9e-12 44.8 38.1 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily G6PD_C PF02781.16 ABA78888.1 - 2.2e-111 371.7 0.0 2.7e-111 371.4 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, C-terminal domain G6PD_N PF00479.22 ABA78888.1 - 1.6e-56 191.7 0.0 2.3e-56 191.2 0.0 1.2 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain Glucosamine_iso PF01182.20 ABA78889.1 - 1.1e-48 166.1 0.0 1.2e-48 166.0 0.0 1.0 1 0 0 1 1 1 1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PGI PF00342.19 ABA78890.1 - 5.2e-192 638.8 0.0 5.9e-192 638.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglucose isomerase Ribonuc_L-PSP PF01042.21 ABA78891.1 - 5.5e-25 87.7 0.0 6.1e-25 87.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Rhodanese PF00581.20 ABA78892.1 - 1.9e-21 76.6 0.0 1.3e-11 44.9 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Sulf_transp PF04143.14 ABA78893.1 - 5.3e-41 141.2 51.5 5.3e-41 141.2 51.5 2.3 2 1 0 2 2 2 1 Sulphur transport EPV_E5 PF08135.11 ABA78893.1 - 5.5 7.4 9.7 1.8 9.0 3.7 2.8 2 0 0 2 2 2 0 Major transforming protein E5 family GSDH PF07995.11 ABA78895.1 - 5.1e-15 55.6 0.2 1.4e-14 54.1 0.2 1.8 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase SGL PF08450.12 ABA78895.1 - 0.023 14.3 0.0 0.092 12.3 0.0 1.9 2 1 0 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 ABA78895.1 - 0.07 13.2 0.4 4.7 7.4 0.1 3.2 3 0 0 3 3 3 0 NHL repeat Cytochrome_CBB3 PF13442.6 ABA78896.1 - 4.4e-12 46.1 0.4 1.4e-06 28.5 0.1 2.2 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA78896.1 - 4.7e-10 40.5 2.0 0.0005 21.2 0.0 3.2 2 2 0 2 2 2 2 Cytochrome c DUF2059 PF09832.9 ABA78896.1 - 0.0052 16.8 0.1 0.7 10.0 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2059) DcrB PF08786.11 ABA78896.1 - 0.058 13.5 0.0 2.3 8.3 0.0 2.1 2 0 0 2 2 2 0 DcrB QueC PF06508.13 ABA78898.2 - 3.3e-05 23.5 0.4 0.13 11.7 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Glyco_transf_29 PF00777.18 ABA78899.1 - 9.4e-05 21.9 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 29 (sialyltransferase) Stealth_CR2 PF11380.8 ABA78900.2 - 8.8e-28 96.6 0.0 1.4e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Stealth protein CR2, conserved region 2 Stealth_CR1 PF17101.5 ABA78900.2 - 6.2e-09 35.4 0.5 5.2e-08 32.5 0.0 2.2 2 0 0 2 2 2 1 Stealth protein CR1, conserved region 1 Stealth_CR3 PF17102.5 ABA78900.2 - 0.057 13.3 0.2 0.15 12.0 0.2 1.7 1 0 0 1 1 1 0 Stealth protein CR3, conserved region 3 PS_pyruv_trans PF04230.13 ABA78901.2 - 1.7e-12 47.9 0.0 2.2e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Glyco_trans_1_4 PF13692.6 ABA78902.2 - 3.4e-05 24.3 0.0 9.1e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 ABA78902.2 - 0.03 13.9 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 HicB_lk_antitox PF15919.5 ABA78903.1 - 3.7e-25 88.4 0.0 4.4e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_1 PF01402.21 ABA78903.1 - 0.00088 19.1 0.6 0.00088 19.1 0.6 1.9 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 ABA78903.1 - 0.061 13.9 0.0 0.09 13.3 0.0 1.3 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system Arm-DNA-bind_3 PF13356.6 ABA78904.1 - 9.2e-19 67.6 0.5 2.5e-18 66.2 0.5 1.7 1 0 0 1 1 1 1 Arm DNA-binding domain Phage_integrase PF00589.22 ABA78904.1 - 1.9e-13 50.6 0.0 9.8e-13 48.3 0.0 1.9 2 0 0 2 2 2 1 Phage integrase family HTH_36 PF13730.6 ABA78906.1 - 5.7e-05 23.0 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF5324 PF17258.2 ABA78907.1 - 0.014 15.1 3.4 0.014 15.1 3.4 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5324) End3 PF12761.7 ABA78910.2 - 0.005 17.0 1.0 0.0069 16.6 1.0 1.1 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 DUF4407 PF14362.6 ABA78910.2 - 0.36 10.1 6.0 0.89 8.8 6.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) HDPD PF02924.14 ABA78913.1 - 1.9e-35 121.5 17.5 8.1e-35 119.4 17.5 1.9 1 1 0 1 1 1 1 Bacteriophage lambda head decoration protein D DUF1521 PF07481.11 ABA78913.1 - 0.0079 16.2 0.2 0.012 15.6 0.2 1.3 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1521) PliI PF16743.5 ABA78913.1 - 0.081 12.7 0.2 0.16 11.8 0.2 1.6 1 0 0 1 1 1 0 Periplasmic lysozyme inhibitor of I-type lysozyme DUF4537 PF15057.6 ABA78913.1 - 0.15 12.1 0.1 0.22 11.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4537) MerR PF00376.23 ABA78914.1 - 0.086 12.6 0.2 0.19 11.5 0.2 1.6 1 0 0 1 1 1 0 MerR family regulatory protein HGTP_anticodon PF03129.20 ABA78914.1 - 0.15 12.2 1.0 0.35 11.1 0.2 2.0 2 1 0 2 2 2 0 Anticodon binding domain DUF1441 PF07278.11 ABA78916.1 - 0.006 16.5 0.2 0.0087 16.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1441) LapA_dom PF06305.11 ABA78916.1 - 0.094 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF4148 PF13663.6 ABA78916.1 - 1.3 9.3 0.0 1.3 9.3 0.0 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4148) Phage_tail_X PF05489.12 ABA78917.2 - 9.6e-14 50.8 0.1 1.2e-13 50.5 0.1 1.1 1 0 0 1 1 1 1 Phage Tail Protein X BrnT_toxin PF04365.13 ABA78919.1 - 2.8e-15 56.4 0.0 3.3e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system BrnA_antitoxin PF14384.6 ABA78920.1 - 9.1e-26 90.2 0.1 1.3e-25 89.6 0.1 1.2 1 0 0 1 1 1 1 BrnA antitoxin of type II toxin-antitoxin system SpoU_methylas_C PF12105.8 ABA78920.1 - 0.0032 17.1 0.1 0.0078 15.9 0.0 1.7 1 1 1 2 2 2 1 SpoU, rRNA methylase, C-terminal RACo_C_ter PF14574.6 ABA78924.1 - 4.5e-87 291.4 0.1 6.6e-87 290.8 0.1 1.3 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 ABA78924.1 - 1.3e-47 161.5 0.0 3.2e-47 160.3 0.0 1.7 2 0 0 2 2 2 1 RACo middle region RACo_linker PF17650.1 ABA78924.1 - 6.6e-33 112.4 0.0 1.3e-32 111.4 0.0 1.6 1 0 0 1 1 1 1 RACo linker region BcrAD_BadFG PF01869.20 ABA78924.1 - 0.056 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family E3_binding PF02817.17 ABA78924.1 - 0.15 12.4 0.6 14 6.2 0.0 3.4 3 0 0 3 3 3 0 e3 binding domain Pterin_bind PF00809.22 ABA78925.1 - 7.3e-28 97.9 0.0 1.1e-27 97.3 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 ABA78925.1 - 3e-09 36.1 0.1 4.4e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DHO_dh PF01180.21 ABA78925.1 - 0.05 12.8 0.1 0.087 12.0 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase MTHFR PF02219.17 ABA78926.2 - 0.082 12.2 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase HTH_29 PF13551.6 ABA78926.2 - 0.094 12.7 0.0 3.5 7.7 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn helix Virulence_fact PF13769.6 ABA78927.1 - 1.4e-28 98.9 0.2 1.6e-28 98.8 0.2 1.0 1 0 0 1 1 1 1 Virulence factor PKD_channel PF08016.12 ABA78927.1 - 0.21 10.2 0.0 0.23 10.1 0.0 1.0 1 0 0 1 1 1 0 Polycystin cation channel Ppx-GppA PF02541.16 ABA78928.1 - 1.4e-45 155.9 0.0 2.8e-45 154.9 0.0 1.5 1 1 0 1 1 1 1 Ppx/GppA phosphatase family MreB_Mbl PF06723.13 ABA78928.1 - 0.031 13.1 0.0 0.051 12.4 0.0 1.3 1 0 0 1 1 1 0 MreB/Mbl protein EutA PF06277.11 ABA78928.1 - 0.19 10.5 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutA FtsA PF14450.6 ABA78928.1 - 0.29 11.6 1.5 56 4.2 0.0 3.2 3 0 0 3 3 3 0 Cell division protein FtsA FtsJ PF01728.19 ABA78929.1 - 3.2e-53 180.4 0.0 3.8e-53 180.2 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 ABA78929.1 - 0.00032 20.5 0.0 0.0005 19.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA78929.1 - 0.00067 19.5 0.0 0.001 18.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Peptidase_M15_2 PF05951.13 ABA78930.1 - 5.1e-45 152.9 0.1 6.4e-45 152.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF882) Peptidase_M15_3 PF08291.11 ABA78930.1 - 1.3e-12 47.8 0.1 2.3e-12 47.0 0.1 1.4 1 0 0 1 1 1 1 Peptidase M15 YkuD PF03734.14 ABA78931.2 - 1.1e-27 97.2 0.0 1.8e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain PG_binding_1 PF01471.18 ABA78931.2 - 5.8e-11 42.4 0.0 2e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 Putative peptidoglycan binding domain Hexapep PF00132.24 ABA78932.1 - 4.7e-24 83.2 26.5 5.1e-08 32.3 0.2 6.0 3 2 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA78932.1 - 7.3e-07 28.8 24.8 0.038 13.7 0.0 5.8 3 3 4 7 7 6 5 Hexapeptide repeat of succinyl-transferase LpxD PF04613.14 ABA78932.1 - 0.002 17.9 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD T2SS-T3SS_pil_N PF13629.6 ABA78932.1 - 0.0083 15.8 1.2 0.28 10.9 0.1 2.8 2 0 0 2 2 2 1 Pilus formation protein N terminal region PP-binding PF00550.25 ABA78933.1 - 6.1e-11 42.5 1.1 1.4e-10 41.4 0.9 1.7 1 1 0 1 1 1 1 Phosphopantetheine attachment site ketoacyl-synt PF00109.26 ABA78934.1 - 1.5e-43 149.3 1.6 1.5e-43 149.3 1.6 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 ABA78934.1 - 4.1e-33 113.9 1.0 7.3e-33 113.1 1.0 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 ABA78934.1 - 5.1e-07 29.3 2.3 6.9e-06 25.6 1.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 ABA78934.1 - 0.012 15.5 1.8 0.029 14.2 0.7 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IalB PF06776.12 ABA78935.1 - 1.1e-36 125.8 0.2 1.6e-36 125.3 0.2 1.2 1 0 0 1 1 1 1 Invasion associated locus B (IalB) protein Catalase PF00199.19 ABA78936.1 - 1.2e-182 607.2 0.1 1.5e-182 606.9 0.1 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 ABA78936.1 - 4.3e-18 65.3 0.1 1.1e-17 64.0 0.1 1.7 1 0 0 1 1 1 1 Catalase-related immune-responsive LysR_substrate PF03466.20 ABA78937.1 - 1.1e-29 103.4 10.8 1.1e-29 103.4 10.8 1.7 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA78937.1 - 3.2e-22 78.3 1.1 3.2e-22 78.3 1.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 ABA78937.1 - 0.032 13.8 0.4 5.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FrhB_FdhB_N PF04422.13 ABA78937.1 - 0.041 14.0 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Redoxin PF08534.10 ABA78938.1 - 7.8e-25 87.3 0.0 9.8e-25 87.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 ABA78938.1 - 2.8e-11 43.4 0.0 3.6e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family MIP PF00230.20 ABA78939.1 - 1e-45 156.2 23.6 1.2e-45 156.0 23.6 1.1 1 0 0 1 1 1 1 Major intrinsic protein Radical_SAM PF04055.21 ABA78940.1 - 4.5e-08 33.6 0.0 1.1e-07 32.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 ABA78940.1 - 3e-06 27.6 0.1 5.5e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family His_biosynth PF00977.21 ABA78940.1 - 0.19 11.2 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein Cytochrom_C PF00034.21 ABA78941.1 - 1.5e-11 45.2 0.0 0.00018 22.5 0.0 2.4 2 0 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA78941.1 - 3.1e-09 37.0 0.0 0.00019 21.7 0.0 2.4 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 ABA78941.1 - 0.0095 15.7 0.7 1.3 8.8 0.0 2.3 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) PSCyt1 PF07635.11 ABA78941.1 - 0.016 15.7 0.0 5.1 7.8 0.0 2.8 2 1 0 2 2 2 0 Planctomycete cytochrome C Cytochrome_C7 PF14522.6 ABA78941.1 - 0.11 12.5 0.0 20 5.3 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Cytochrom_C_2 PF01322.20 ABA78942.1 - 1.9e-33 115.9 0.0 2.4e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 Cytochrome C' Pribosyltran PF00156.27 ABA78943.1 - 4.9e-27 94.4 0.1 6e-27 94.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 ABA78943.1 - 0.00023 20.7 0.0 0.00029 20.4 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 ABA78943.1 - 0.099 12.1 0.1 0.26 10.8 0.1 1.8 1 1 0 1 1 1 0 Phosphoribosyl transferase Polyketide_cyc PF03364.20 ABA78944.1 - 1.1e-25 90.3 0.1 1.3e-25 90.1 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 ABA78944.1 - 3.1e-07 30.8 0.0 3.9e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_29 PF13551.6 ABA78946.1 - 4.4e-09 36.2 1.5 1.3e-08 34.7 1.5 1.9 1 0 0 1 1 1 1 Winged helix-turn helix rve PF00665.26 ABA78946.1 - 5.8e-08 33.0 0.1 1.1e-07 32.1 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_32 PF13565.6 ABA78946.1 - 6.3e-08 33.1 1.2 6.3e-08 33.1 1.2 3.6 4 0 0 4 4 4 1 Homeodomain-like domain HTH_28 PF13518.6 ABA78946.1 - 1.5e-07 31.4 1.3 5.4e-06 26.4 0.7 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA78946.1 - 1.8e-07 30.7 2.2 8.4e-06 25.4 1.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_17 PF12728.7 ABA78946.1 - 0.011 15.9 0.2 1.6 9.0 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3663 PF12404.8 ABA78946.1 - 0.16 12.1 0.7 0.46 10.6 0.0 2.1 3 0 0 3 3 3 0 Peptidase HTH_Crp_2 PF13545.6 ABA78946.1 - 0.56 10.2 3.4 0.89 9.6 0.7 2.7 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Ribul_P_3_epim PF00834.19 ABA78947.1 - 6.5e-78 260.7 0.0 7.7e-78 260.4 0.0 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family DAO PF01266.24 ABA78948.1 - 2e-51 175.7 3.0 2.2e-51 175.5 3.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 ABA78948.1 - 0.00026 20.3 0.0 0.00051 19.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 ABA78948.1 - 0.00051 19.0 0.4 0.044 12.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Mqo PF06039.15 ABA78948.1 - 0.00052 18.7 0.0 0.00068 18.3 0.0 1.1 1 0 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) FAD_oxidored PF12831.7 ABA78948.1 - 0.0014 18.1 1.8 0.018 14.4 1.8 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA78948.1 - 0.0019 17.5 0.1 0.18 11.0 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 ABA78948.1 - 0.006 15.7 0.1 1 8.4 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Lycopene_cycl PF05834.12 ABA78948.1 - 0.0071 15.4 0.9 0.16 11.0 0.1 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 ABA78948.1 - 0.017 14.2 2.6 0.075 12.1 2.6 1.8 1 1 0 1 1 1 0 FAD binding domain FAD_binding_3 PF01494.19 ABA78948.1 - 0.031 13.5 0.3 0.052 12.8 0.1 1.4 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.27 ABA78948.1 - 0.19 12.3 0.1 0.57 10.8 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 ABA78948.1 - 0.26 10.6 0.1 0.26 10.6 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain EF_TS PF00889.19 ABA78949.1 - 1.5e-62 210.9 4.0 2.1e-62 210.4 4.0 1.2 1 0 0 1 1 1 1 Elongation factor TS UBA PF00627.31 ABA78949.1 - 0.066 13.1 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 UBA/TS-N domain Adeno_52K PF03052.15 ABA78949.1 - 0.068 12.6 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Adenoviral protein L1 52/55-kDa Ribosomal_L12 PF00542.19 ABA78949.1 - 0.071 13.5 0.3 0.071 13.5 0.3 2.7 4 0 0 4 4 4 0 Ribosomal protein L7/L12 C-terminal domain Phage_r1t_holin PF16945.5 ABA78949.1 - 0.071 13.3 2.7 0.39 10.9 0.8 2.8 1 1 1 2 2 2 0 Putative lactococcus lactis phage r1t holin SpoIIID PF12116.8 ABA78949.1 - 0.13 12.3 0.1 22 5.2 0.0 2.5 2 0 0 2 2 2 0 Stage III sporulation protein D Ribosomal_S2 PF00318.20 ABA78950.1 - 3.5e-92 307.5 0.0 4e-92 307.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S2 Phosphatase PF15698.5 ABA78950.1 - 0.026 13.7 0.1 0.043 12.9 0.1 1.3 1 0 0 1 1 1 0 Phosphatase Peripla_BP_4 PF13407.6 ABA78950.1 - 0.035 13.7 3.1 0.044 13.4 1.2 1.9 1 1 0 2 2 2 0 Periplasmic binding protein domain Glyco_tran_WecB PF03808.13 ABA78950.1 - 0.12 12.3 0.1 0.18 11.7 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family YafQ_toxin PF15738.5 ABA78950.1 - 0.15 12.4 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial toxin of type II toxin-antitoxin system, YafQ PfkB PF00294.24 ABA78951.2 - 8.2e-26 91.0 0.5 1e-25 90.7 0.5 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Indigoidine_A PF04227.12 ABA78952.1 - 2.2e-122 408.0 7.0 2.5e-122 407.8 7.0 1.0 1 0 0 1 1 1 1 Indigoidine synthase A like protein adh_short_C2 PF13561.6 ABA78953.2 - 2.7e-53 180.9 1.6 4e-53 180.4 1.6 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA78953.2 - 1.1e-51 175.1 1.0 3.1e-51 173.6 0.5 1.8 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 ABA78953.2 - 7.4e-07 29.3 0.4 1.2e-06 28.6 0.4 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA78953.2 - 0.00019 21.0 0.1 0.0003 20.3 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family AdoHcyase_NAD PF00670.21 ABA78953.2 - 0.018 15.1 0.0 0.26 11.3 0.0 2.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SBP_bac_5 PF00496.22 ABA78954.1 - 6e-69 232.8 0.0 7.9e-69 232.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ACR_tran PF00873.19 ABA78955.1 - 2.3e-231 770.5 17.1 7.6e-231 768.8 17.1 1.7 1 1 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 ABA78955.1 - 1.4e-09 37.4 43.5 5.8e-06 25.5 12.4 3.1 2 1 1 3 3 3 2 MMPL family SecD_SecF PF02355.16 ABA78955.1 - 0.00016 21.1 21.2 0.0037 16.7 7.7 2.4 2 0 0 2 2 2 2 Protein export membrane protein ZT_dimer PF16916.5 ABA78955.1 - 0.0025 17.9 0.3 0.096 12.8 0.1 2.8 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter HlyD_D23 PF16576.5 ABA78956.1 - 1e-16 60.8 10.5 7.9e-16 57.9 10.5 2.1 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 ABA78956.1 - 4.2e-12 46.7 3.6 5.9e-11 43.0 0.1 3.1 2 1 1 3 3 3 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 ABA78956.1 - 1.5e-05 24.7 2.2 1.5e-05 24.7 2.2 3.4 5 1 0 5 5 5 1 Biotin-lipoyl like OEP PF02321.18 ABA78956.1 - 0.021 14.7 21.7 0.055 13.3 21.7 1.7 1 1 0 1 1 1 0 Outer membrane efflux protein Biotin_lipoyl PF00364.22 ABA78956.1 - 0.035 14.0 0.7 1.1 9.1 0.1 2.9 3 0 0 3 3 3 0 Biotin-requiring enzyme KORA PF16509.5 ABA78956.1 - 0.28 11.5 3.9 4.5 7.6 0.4 2.9 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor FLgD_tudor PF13861.6 ABA78956.1 - 0.28 11.4 1.8 11 6.3 0.2 3.3 2 1 0 2 2 2 0 FlgD Tudor-like domain Atg14 PF10186.9 ABA78956.1 - 0.54 9.3 3.9 0.74 8.8 3.9 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 MscS_porin PF12795.7 ABA78956.1 - 0.74 9.3 23.4 3.7 7.0 3.5 2.0 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain ERM PF00769.19 ABA78956.1 - 0.89 9.3 13.0 1.2 8.9 13.0 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family TetR_N PF00440.23 ABA78957.1 - 1.4e-16 60.0 0.1 3e-16 58.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 ABA78957.1 - 0.00017 21.8 4.8 0.00039 20.6 4.8 1.7 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal DSBA PF01323.20 ABA78958.1 - 5.4e-40 137.2 0.0 6.1e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 ABA78958.1 - 0.00017 21.8 0.0 0.0016 18.6 0.0 2.1 2 1 0 2 2 2 1 Thioredoxin Channel_Tsx PF03502.13 ABA78958.1 - 0.27 10.9 0.0 0.36 10.5 0.0 1.1 1 0 0 1 1 1 0 Nucleoside-specific channel-forming protein, Tsx MFS_1 PF07690.16 ABA78959.1 - 4.4e-39 134.4 48.0 4.4e-39 134.4 48.0 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA78959.1 - 7.6e-10 38.2 3.3 7.6e-10 38.2 3.3 3.3 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 ABA78959.1 - 3.7e-07 29.0 26.6 9.2e-05 21.2 1.6 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein TRCF PF03461.15 ABA78960.1 - 6e-25 87.5 0.0 1.4e-24 86.3 0.0 1.7 1 0 0 1 1 1 1 TRCF domain CarD_CdnL_TRCF PF02559.16 ABA78960.1 - 2.5e-23 82.6 0.0 5.5e-23 81.5 0.0 1.6 1 0 0 1 1 1 1 CarD-like/TRCF domain Helicase_C PF00271.31 ABA78960.1 - 5.3e-17 62.2 0.0 1.3e-15 57.7 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UvrB_inter PF17757.1 ABA78960.1 - 6.1e-16 58.4 0.0 1.7e-15 56.9 0.0 1.8 1 0 0 1 1 1 1 UvrB interaction domain DEAD PF00270.29 ABA78960.1 - 2.8e-15 56.5 0.0 5.1e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 ABA78960.1 - 1.4e-06 28.4 0.0 2.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 ABA78960.1 - 0.014 14.7 0.0 0.047 13.0 0.0 1.7 2 0 0 2 2 2 0 SecA DEAD-like domain AAA_16 PF13191.6 ABA78960.1 - 0.017 15.5 0.0 0.076 13.4 0.0 2.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 ABA78960.1 - 0.12 12.1 0.1 0.38 10.4 0.1 1.9 1 0 0 1 1 1 0 AAA domain DUF4282 PF14110.6 ABA78961.1 - 0.099 13.4 2.3 0.22 12.3 1.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF3464 PF11947.8 ABA78961.1 - 0.13 12.0 0.2 0.24 11.2 0.2 1.4 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 SAYSvFN PF10260.9 ABA78961.1 - 5.3 7.0 9.4 1.3 9.0 0.1 2.7 3 1 0 3 3 3 0 Uncharacterized conserved domain (SAYSvFN) DUF4131 PF13567.6 ABA78961.1 - 7.1 6.2 9.9 0.78 9.4 4.9 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) ALAD PF00490.21 ABA78962.1 - 1.5e-135 451.5 0.0 1.7e-135 451.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase AP_endonuc_2 PF01261.24 ABA78962.1 - 0.016 14.7 0.0 0.033 13.6 0.0 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Ysc84 PF04366.12 ABA78963.1 - 1.1e-07 31.7 0.8 1.1e-07 31.7 0.8 1.7 2 0 0 2 2 2 1 Las17-binding protein actin regulator TAT_signal PF10518.9 ABA78963.1 - 0.028 14.2 2.9 0.028 14.2 2.9 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NAD_binding_2 PF03446.15 ABA78964.2 - 2.1e-47 161.2 1.7 3.3e-47 160.6 1.7 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 ABA78964.2 - 1.8e-36 125.0 0.4 3.7e-36 124.0 0.4 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 ABA78964.2 - 4.5e-11 43.2 0.1 1.1e-10 41.9 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 ABA78964.2 - 4.1e-05 23.7 0.0 8.3e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 ABA78964.2 - 0.00018 21.2 0.1 0.00029 20.5 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 ABA78964.2 - 0.00018 21.4 0.1 0.00029 20.7 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 ABA78964.2 - 0.00026 20.4 0.0 0.00048 19.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 ABA78964.2 - 0.011 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 ABA78964.2 - 0.021 14.8 0.1 0.044 13.8 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Penicil_amidase PF01804.18 ABA78965.1 - 3.5e-198 660.8 7.2 4.2e-198 660.5 7.2 1.0 1 0 0 1 1 1 1 Penicillin amidase GTP-bdg_M PF16360.5 ABA78966.2 - 1.4e-27 96.1 5.2 2.7e-27 95.2 5.2 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 ABA78966.2 - 1.8e-22 79.8 0.0 4e-22 78.7 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 ABA78966.2 - 7.8e-20 71.1 0.0 2.6e-19 69.4 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 ABA78966.2 - 0.00018 21.6 0.0 0.0036 17.4 0.0 2.3 1 1 0 2 2 2 1 Dynamin family FeoB_N PF02421.18 ABA78966.2 - 0.00074 19.1 0.0 0.0014 18.2 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 ABA78966.2 - 0.0022 17.9 0.0 0.25 11.2 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 ABA78966.2 - 0.037 13.8 0.0 5.3 6.8 0.0 2.6 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 ABA78966.2 - 0.047 14.2 0.0 0.11 12.9 0.0 1.8 1 1 0 1 1 1 0 ABC transporter GTP_EFTU PF00009.27 ABA78966.2 - 0.087 12.3 0.0 11 5.5 0.0 2.5 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Arf PF00025.21 ABA78966.2 - 0.1 12.0 0.0 9.3 5.7 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family cobW PF02492.19 ABA78966.2 - 0.28 10.8 0.9 18 4.9 0.1 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Hfq PF17209.3 ABA78967.1 - 1.1e-33 114.7 0.0 1.2e-33 114.5 0.0 1.0 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 ABA78967.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 LSM domain TrkH PF02386.16 ABA78968.1 - 2.7e-22 78.9 0.9 5.5e-13 48.2 2.1 2.1 2 0 0 2 2 2 2 Cation transport protein TrkA_N PF02254.18 ABA78969.1 - 2.1e-48 163.4 8.5 7.2e-25 87.5 0.2 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 ABA78969.1 - 1.4e-22 79.3 4.5 1.3e-11 44.1 0.2 3.2 3 0 0 3 3 2 2 TrkA-C domain NAD_binding_7 PF13241.6 ABA78969.1 - 1.8e-12 47.6 6.1 2.3e-05 24.7 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox PF00070.27 ABA78969.1 - 1.8e-08 34.9 5.8 0.00071 20.1 0.7 2.9 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 ABA78969.1 - 3.7e-08 33.5 1.9 0.0021 18.1 0.4 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 ABA78969.1 - 4.5e-08 33.1 2.7 0.0025 17.5 0.5 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA78969.1 - 2.7e-07 30.1 2.7 0.00036 19.9 0.4 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 ABA78969.1 - 9.4e-06 25.9 4.5 0.0013 19.0 0.7 2.9 2 1 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain K_oxygenase PF13434.6 ABA78969.1 - 1.4e-05 24.4 0.5 0.00086 18.5 0.0 2.5 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) F420_oxidored PF03807.17 ABA78969.1 - 2.2e-05 25.0 2.1 0.052 14.1 0.4 3.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 ABA78969.1 - 2.7e-05 24.2 0.4 0.0078 16.2 0.1 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 ABA78969.1 - 3.2e-05 23.9 3.4 0.015 15.2 0.2 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 ABA78969.1 - 3.8e-05 23.8 1.4 0.037 14.3 0.2 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 ABA78969.1 - 7.3e-05 23.3 1.6 0.084 13.4 0.1 2.5 2 1 0 2 2 2 2 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 ABA78969.1 - 7.9e-05 22.0 6.0 0.0066 15.8 0.5 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 ABA78969.1 - 0.00018 21.7 0.8 0.065 13.4 0.1 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 ABA78969.1 - 0.00023 20.9 0.9 0.16 11.6 0.1 2.3 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 ABA78969.1 - 0.00037 21.3 2.3 0.27 12.0 0.1 3.4 3 1 1 4 4 3 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.14 ABA78969.1 - 0.00043 19.9 0.6 0.21 11.1 0.1 2.8 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 ABA78969.1 - 0.00085 18.3 1.6 0.27 10.0 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.6 ABA78969.1 - 0.00087 19.3 0.3 0.01 15.8 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 ABA78969.1 - 0.0024 17.2 0.5 0.15 11.3 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain DUF1188 PF06690.11 ABA78969.1 - 0.0025 17.4 0.1 0.89 9.0 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) Thi4 PF01946.17 ABA78969.1 - 0.0027 17.0 0.4 0.11 11.8 0.2 2.4 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.19 ABA78969.1 - 0.0037 16.7 0.6 0.44 9.9 0.1 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 ABA78969.1 - 0.0039 16.3 1.6 0.55 9.2 0.6 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein MTS PF05175.14 ABA78969.1 - 0.005 16.4 1.4 0.037 13.6 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase small domain HI0933_like PF03486.14 ABA78969.1 - 0.014 14.1 2.7 0.45 9.1 0.7 2.2 2 0 0 2 2 2 0 HI0933-like protein LpxI_N PF17930.1 ABA78969.1 - 0.016 15.1 0.8 11 5.9 0.0 3.3 3 0 0 3 3 3 0 LpxI N-terminal domain Pyr_redox_3 PF13738.6 ABA78969.1 - 0.02 14.2 1.2 0.65 9.2 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Gp_dh_N PF00044.24 ABA78969.1 - 0.021 15.1 0.9 0.39 11.1 0.1 2.6 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Fibrillarin_2 PF10113.9 ABA78969.1 - 0.04 12.6 0.7 1.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Fibrillarin-like archaeal protein GARS_N PF02844.15 ABA78969.1 - 0.047 14.5 0.8 19 6.1 0.1 2.8 3 0 0 3 3 2 0 Phosphoribosylglycinamide synthetase, N domain DapB_N PF01113.20 ABA78969.1 - 0.054 13.6 3.9 2.4 8.3 0.2 2.5 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Pam16 PF03656.13 ABA78969.1 - 0.1 12.6 1.0 18 5.3 0.0 2.6 3 0 0 3 3 2 0 Pam16 AdoHcyase_NAD PF00670.21 ABA78969.1 - 0.12 12.5 2.6 8.9 6.4 0.1 2.6 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Epimerase PF01370.21 ABA78969.1 - 0.25 10.8 4.3 6.6 6.1 0.4 2.8 2 1 1 3 3 3 0 NAD dependent epimerase/dehydratase family adh_short PF00106.25 ABA78969.1 - 0.85 9.0 3.6 12 5.3 0.7 2.2 2 0 0 2 2 2 0 short chain dehydrogenase Rossmann-like PF10727.9 ABA78969.1 - 1.5 8.7 5.5 0.74 9.7 0.8 2.7 2 1 1 3 3 3 0 Rossmann-like domain Sigma54_activat PF00158.26 ABA78970.1 - 1.7e-41 141.8 0.0 2.5e-41 141.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 ABA78970.1 - 5.4e-28 97.4 0.8 9.8e-28 96.6 0.8 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 ABA78970.1 - 5.9e-22 78.3 0.0 1.3e-21 77.2 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA78970.1 - 4.3e-10 39.2 1.7 9.9e-10 38.1 0.1 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, Fis family AAA PF00004.29 ABA78970.1 - 0.0034 17.8 0.0 0.0082 16.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA78970.1 - 0.023 14.7 0.0 0.061 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HGD-D PF06050.13 ABA78970.1 - 0.037 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component MCM PF00493.23 ABA78970.1 - 0.043 12.9 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 MCM P-loop domain AAA_2 PF07724.14 ABA78970.1 - 0.058 13.5 0.0 0.14 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) OKR_DC_1_N PF03709.15 ABA78970.1 - 0.093 13.0 0.0 0.33 11.3 0.0 1.9 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain Mg_chelatase PF01078.21 ABA78970.1 - 0.14 11.5 0.1 13 5.0 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FleQ PF06490.11 ABA78970.1 - 0.14 12.5 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ HAMP PF00672.25 ABA78971.2 - 1.4e-15 57.4 3.1 2.1e-15 56.8 0.2 2.9 3 0 0 3 3 2 1 HAMP domain HATPase_c PF02518.26 ABA78971.2 - 1.1e-14 54.9 0.0 2.1e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA78971.2 - 3.1e-12 46.4 0.6 1.2e-10 41.3 0.0 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 ABA78971.2 - 2.8e-10 40.2 0.0 9.6e-10 38.5 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 ABA78971.2 - 1.1e-08 35.3 1.6 1.3e-07 31.8 0.1 2.9 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 ABA78971.2 - 0.00021 21.2 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 ABA78971.2 - 0.00032 20.9 0.0 0.0014 18.9 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 ABA78971.2 - 0.00069 19.8 0.1 0.019 15.1 0.1 3.2 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 ABA78971.2 - 0.0065 16.5 0.0 0.02 14.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain COX1 PF00115.20 ABA78971.2 - 0.019 13.8 4.7 0.026 13.4 2.8 1.8 2 0 0 2 2 2 0 Cytochrome C and Quinol oxidase polypeptide I HATPase_c_2 PF13581.6 ABA78971.2 - 0.049 13.6 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_10 PF13596.6 ABA78971.2 - 0.07 13.7 0.0 0.21 12.2 0.0 1.9 1 1 0 1 1 1 0 PAS domain Yip1 PF04893.17 ABA78971.2 - 0.19 11.4 6.2 1.1 8.9 5.0 2.1 2 0 0 2 2 2 0 Yip1 domain DUF697 PF05128.12 ABA78971.2 - 0.27 10.9 3.1 0.75 9.5 3.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF697) DUF2157 PF09925.9 ABA78971.2 - 0.32 10.8 11.6 0.35 10.6 0.4 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) Sigma54_activ_2 PF14532.6 ABA78972.1 - 4.5e-28 98.1 0.0 8.1e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 ABA78972.1 - 3.5e-27 94.8 0.1 1.4e-26 92.9 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain Sigma54_activat PF00158.26 ABA78972.1 - 2.5e-24 85.9 0.0 2.5e-13 50.1 0.0 2.6 1 1 1 2 2 2 2 Sigma-54 interaction domain HTH_8 PF02954.19 ABA78972.1 - 1.9e-13 50.0 0.1 1.9e-13 50.0 0.1 3.3 4 0 0 4 4 4 1 Bacterial regulatory protein, Fis family AAA_16 PF13191.6 ABA78972.1 - 3e-08 34.3 0.4 1.5e-07 32.0 0.1 2.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 ABA78972.1 - 0.0024 18.2 0.0 0.012 15.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 ABA78972.1 - 0.0035 16.9 0.0 0.0062 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region HTH_30 PF13556.6 ABA78972.1 - 0.0037 17.0 0.1 0.051 13.4 0.0 2.6 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain TIP49 PF06068.13 ABA78972.1 - 0.0049 16.1 0.0 0.018 14.3 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain Phage_NinH PF06322.11 ABA78972.1 - 0.0086 15.9 0.1 0.044 13.7 0.0 2.2 2 0 0 2 2 2 1 Phage NinH protein AAA PF00004.29 ABA78972.1 - 0.016 15.6 0.0 0.042 14.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 ABA78972.1 - 0.026 13.7 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_5 PF07728.14 ABA78972.1 - 0.04 13.9 0.0 0.29 11.1 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 ABA78972.1 - 0.071 12.5 0.0 2.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI BAGE PF08180.11 ABA78972.1 - 1.1 9.4 0.0 1.1 9.4 0.0 2.8 3 0 0 3 3 3 0 B melanoma antigen family HATPase_c PF02518.26 ABA78973.1 - 8.8e-20 71.3 0.0 1.4e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA78973.1 - 1.4e-11 44.2 0.1 4e-11 42.8 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 ABA78973.1 - 1e-07 31.9 0.0 8e-07 29.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 ABA78973.1 - 1.7e-06 28.2 0.0 4.4e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 ABA78973.1 - 2.8e-05 24.3 0.0 7.1e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 ABA78973.1 - 0.022 14.7 0.0 0.055 13.4 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 ABA78973.1 - 0.062 13.2 0.0 1.1 9.1 0.0 2.3 1 1 0 1 1 1 0 GHKL domain Dus PF01207.17 ABA78974.1 - 1.7e-102 342.7 0.0 2.1e-102 342.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 ABA78974.1 - 0.0001 21.9 1.2 0.0035 16.8 0.1 2.3 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase NanE PF04131.14 ABA78974.1 - 0.0014 17.9 2.3 0.076 12.2 0.2 2.3 1 1 1 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 ABA78974.1 - 0.005 16.3 5.2 0.0052 16.2 2.7 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.17 ABA78974.1 - 0.017 14.4 0.7 0.036 13.4 0.7 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase SOR_SNZ PF01680.17 ABA78974.1 - 0.031 14.1 3.2 1.2 8.9 0.3 2.4 1 1 1 2 2 2 0 SOR/SNZ family IMPDH PF00478.25 ABA78974.1 - 0.053 12.5 1.0 0.11 11.5 1.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Glyoxalase PF00903.25 ABA78974.1 - 0.19 11.9 0.0 0.49 10.6 0.0 1.7 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IspD PF01128.19 ABA78975.1 - 3.1e-70 236.4 0.7 3.9e-70 236.0 0.7 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 ABA78975.1 - 3.7e-14 53.4 7.9 4.8e-14 53.0 7.9 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 ABA78975.1 - 0.029 14.3 0.0 0.035 14.0 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase YgbB PF02542.16 ABA78976.1 - 8.5e-61 204.8 0.0 9.9e-61 204.6 0.0 1.0 1 0 0 1 1 1 1 YgbB family PgpA PF04608.13 ABA78977.1 - 2.2e-39 134.8 2.1 2.6e-39 134.5 2.1 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CinA PF02464.17 ABA78978.1 - 1e-54 184.3 4.0 1.1e-54 184.1 4.0 1.0 1 0 0 1 1 1 1 Competence-damaged protein HI0933_like PF03486.14 ABA78979.1 - 5.4e-129 430.5 0.0 6.1e-129 430.3 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 ABA78979.1 - 6.5e-10 38.7 5.7 5e-08 32.4 0.3 2.9 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 ABA78979.1 - 4.7e-09 36.3 6.2 6.3e-05 22.7 1.1 2.9 1 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 ABA78979.1 - 5.2e-08 32.5 0.3 0.0039 16.5 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 ABA78979.1 - 5.7e-07 29.0 0.1 0.00068 19.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA78979.1 - 4.9e-06 26.2 0.1 6.7e-06 25.7 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA78979.1 - 6.6e-06 26.3 0.9 2.3e-05 24.6 0.9 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 ABA78979.1 - 0.0001 21.7 0.1 0.0002 20.8 0.1 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 ABA78979.1 - 0.00093 18.5 0.2 0.0015 17.9 0.2 1.4 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 ABA78979.1 - 0.003 16.8 0.1 0.0057 15.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 ABA78979.1 - 0.0043 17.6 0.1 2 9.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 ABA78979.1 - 0.01 15.0 4.0 0.072 12.2 0.3 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 ABA78979.1 - 0.027 13.8 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CobA_CobO_BtuR PF02572.15 ABA78980.1 - 1.4e-60 204.5 0.0 1.8e-60 204.1 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Co_AT_N PF12557.8 ABA78980.1 - 0.35 10.8 6.2 0.61 10.1 6.2 1.4 1 0 0 1 1 1 0 Cob(I)alamin adenosyltransferase N terminal NnrS PF05940.12 ABA78981.1 - 1.4e-79 268.2 64.0 1.7e-79 267.9 64.0 1.0 1 0 0 1 1 1 1 NnrS protein DUF1636 PF07845.11 ABA78982.1 - 1.9e-34 118.6 0.0 2.1e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) 2Fe-2S_thioredx PF01257.19 ABA78982.1 - 0.02 14.7 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin cobW PF02492.19 ABA78983.1 - 7.5e-55 185.2 0.0 1.2e-54 184.6 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 ABA78983.1 - 1.1e-17 63.8 0.3 1.9e-17 62.9 0.3 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain AAA_33 PF13671.6 ABA78983.1 - 0.0045 17.2 0.1 0.011 15.9 0.1 1.7 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 ABA78983.1 - 0.0094 16.0 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 ABA78983.1 - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.6 ABA78983.1 - 0.017 15.4 0.9 0.043 14.1 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 ABA78983.1 - 0.024 14.9 0.0 0.053 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA78983.1 - 0.053 14.1 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA78983.1 - 0.12 12.8 0.0 0.19 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA78983.1 - 0.14 12.0 0.0 0.72 9.7 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase ATPase_2 PF01637.18 ABA78983.1 - 0.21 11.5 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 ABA78983.1 - 0.23 12.0 0.1 0.44 11.1 0.1 1.4 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 ABA78983.1 - 0.4 11.1 5.9 4.4 7.6 5.9 2.7 1 1 0 1 1 1 0 AAA ATPase domain CobN-Mg_chel PF02514.16 ABA78984.1 - 3e-230 767.1 0.0 5e-122 408.7 0.0 2.8 1 1 1 2 2 2 2 CobN/Magnesium Chelatase CbiC PF02570.15 ABA78985.1 - 8.4e-71 237.7 1.0 9.4e-71 237.5 1.0 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 ABA78986.2 - 1.9e-43 148.9 0.2 2.2e-43 148.7 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 ABA78987.1 - 1.7e-32 113.1 3.5 2.3e-32 112.7 3.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases AA_kinase PF00696.28 ABA78987.1 - 0.075 12.6 0.1 0.13 11.8 0.0 1.4 2 0 0 2 2 2 0 Amino acid kinase family CbiJ PF02571.14 ABA78988.1 - 4.8e-72 242.2 0.0 5.4e-72 242.1 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK ATPgrasp_N PF18130.1 ABA78988.1 - 0.042 14.4 0.0 1.1 9.8 0.0 2.6 2 0 0 2 2 2 0 ATP-grasp N-terminal domain TP_methylase PF00590.20 ABA78989.1 - 3.8e-11 43.3 2.3 5.6e-10 39.5 2.3 2.2 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_25 PF13649.6 ABA78989.1 - 0.007 17.0 0.0 0.017 15.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 ABA78989.1 - 0.0084 15.8 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 ABA78989.1 - 0.03 15.0 0.0 0.063 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain CbiG_C PF01890.16 ABA78990.1 - 1.7e-18 67.3 1.8 8.4e-18 65.0 1.8 1.8 1 1 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 ABA78991.1 - 9.9e-43 146.6 1.8 1.2e-42 146.3 1.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 ABA78991.1 - 0.022 15.1 0.0 0.03 14.7 0.0 1.3 1 1 0 1 1 1 0 Radical SAM superfamily TP_methylase PF00590.20 ABA78992.1 - 2.7e-44 151.7 2.7 3.4e-44 151.3 2.7 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 ABA78993.1 - 2.3e-30 106.1 1.0 3e-30 105.8 1.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DHQ_synthase PF01761.20 ABA78994.1 - 4.2e-98 327.7 0.0 5.4e-98 327.3 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 ABA78994.1 - 9e-15 55.0 0.0 2.3e-13 50.4 0.0 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 ABA78994.1 - 1.1e-12 47.4 1.8 2.4e-10 39.8 0.2 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase AlaDh_PNT_C PF01262.21 ABA78994.1 - 0.0013 18.1 0.3 0.093 12.0 0.2 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Glyco_trans_4_4 PF13579.6 ABA78994.1 - 0.0041 17.6 1.3 0.0041 17.6 1.3 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain SKI PF01202.22 ABA78994.1 - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate kinase SKI PF01202.22 ABA78995.2 - 1e-46 158.9 0.0 1.3e-46 158.6 0.0 1.1 1 0 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 ABA78995.2 - 2.1e-06 27.9 0.1 7.3e-06 26.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 ABA78995.2 - 4.8e-06 26.8 0.0 0.017 15.3 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 ABA78995.2 - 5.7e-06 26.9 0.0 9.4e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 ABA78995.2 - 0.0023 17.9 0.0 0.004 17.2 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 ABA78995.2 - 0.042 14.3 0.0 0.081 13.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) 3HCDH_N PF02737.18 ABA78995.2 - 0.069 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Zeta_toxin PF06414.12 ABA78995.2 - 0.12 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 ABA78995.2 - 0.14 11.5 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI 6PF2K PF01591.18 ABA78995.2 - 0.15 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 6-phosphofructo-2-kinase dNK PF01712.19 ABA78995.2 - 0.22 11.4 0.0 2.4 8.0 0.0 2.0 2 0 0 2 2 2 0 Deoxynucleoside kinase Phage_integrase PF00589.22 ABA78997.2 - 2.2e-43 148.0 0.0 3.2e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 ABA78997.2 - 6e-14 52.1 1.5 6e-14 52.1 1.5 2.7 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 ABA78997.2 - 1.6e-05 25.3 0.0 4.5e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 ABA78997.2 - 0.0011 19.1 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Integrase Phage_int_SAM_5 PF13102.6 ABA78997.2 - 0.0076 16.6 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase SAM-like domain DUF21 PF01595.20 ABA78998.1 - 2e-46 157.9 2.2 3.6e-46 157.1 2.2 1.4 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 ABA78998.1 - 8.9e-20 70.5 0.0 2.6e-19 69.0 0.0 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 ABA78998.1 - 1.9e-15 57.1 2.0 1.4e-08 35.1 0.0 3.3 4 0 0 4 4 4 2 CBS domain HEPN_RES_NTD1 PF18870.1 ABA78998.1 - 0.079 13.2 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 HEPN/RES N-terminal domain 1 Fumarate_red_D PF02313.17 ABA78998.1 - 0.081 13.0 1.8 0.17 12.0 1.8 1.5 1 0 0 1 1 1 0 Fumarate reductase subunit D HTH_38 PF13936.6 ABA78999.1 - 2e-06 27.4 1.9 1.7e-05 24.4 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA78999.1 - 0.0003 20.5 0.1 0.0019 17.9 0.1 2.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 ABA78999.1 - 0.0018 18.3 0.1 0.0018 18.3 0.1 3.1 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_20 PF12840.7 ABA78999.1 - 0.0036 17.3 2.0 0.12 12.4 0.2 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 ABA78999.1 - 0.027 14.5 0.6 0.12 12.4 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.6 ABA78999.1 - 0.078 12.5 0.1 0.2 11.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 ABA78999.1 - 0.099 12.3 0.4 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.10 ABA78999.1 - 0.19 11.5 2.1 0.22 11.3 0.3 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain MTTB PF06253.11 ABA79001.1 - 6.9e-234 776.4 0.0 8.1e-234 776.2 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) ABC_trans_aux PF03886.13 ABA79002.1 - 1.1e-17 64.1 0.3 1.4e-17 63.7 0.3 1.1 1 0 0 1 1 1 1 ABC-type transport auxiliary lipoprotein component MlaD PF02470.20 ABA79003.1 - 1.2e-14 54.4 1.3 1.8e-14 53.8 0.5 1.7 2 0 0 2 2 2 1 MlaD protein API5 PF05918.11 ABA79003.1 - 0.0098 14.7 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Apoptosis inhibitory protein 5 (API5) DUF948 PF06103.11 ABA79003.1 - 0.012 15.8 2.1 6.2 7.2 1.2 3.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 ABA79003.1 - 0.019 15.0 2.5 0.088 12.8 1.1 2.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1859 PF08948.10 ABA79003.1 - 0.024 14.6 0.2 0.05 13.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1859) Laminin_II PF06009.12 ABA79003.1 - 0.048 13.7 0.7 3.4 7.7 0.0 2.7 2 1 0 2 2 2 0 Laminin Domain II YoeB_toxin PF06769.14 ABA79003.1 - 0.08 13.0 0.0 0.52 10.4 0.0 2.3 3 0 0 3 3 3 0 YoeB-like toxin of bacterial type II toxin-antitoxin system HWE_HK PF07536.14 ABA79003.1 - 0.31 11.8 2.8 0.31 11.8 1.0 2.0 2 0 0 2 2 2 0 HWE histidine kinase ABC_tran PF00005.27 ABA79004.1 - 2.5e-29 102.5 0.0 3.4e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79004.1 - 8.4e-09 35.6 1.4 2.8e-05 24.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79004.1 - 0.016 14.6 0.0 0.075 12.5 0.0 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.18 ABA79004.1 - 0.018 14.4 0.0 0.086 12.2 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_30 PF13604.6 ABA79004.1 - 0.021 14.6 0.6 0.025 14.3 0.6 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA79004.1 - 0.065 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 ABA79004.1 - 0.097 12.4 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 ABA79004.1 - 0.12 12.0 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 ABA79004.1 - 0.13 12.7 0.0 0.73 10.3 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 ABA79004.1 - 0.19 11.9 0.4 0.29 11.2 0.4 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase MlaE PF02405.16 ABA79005.2 - 1.2e-72 244.1 16.8 1.9e-72 243.4 16.8 1.3 1 0 0 1 1 1 1 Permease MlaE STAS_2 PF13466.6 ABA79005.2 - 1.5e-10 41.3 2.0 3.7e-10 40.0 2.0 1.7 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 ABA79005.2 - 3.2e-05 23.5 0.0 0.0001 21.9 0.0 1.8 1 0 0 1 1 1 1 STAS domain PepSY_2 PF13670.6 ABA79006.1 - 9.8e-24 83.2 0.2 1.1e-23 83.0 0.2 1.0 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain Ni_hydr_CYTB PF01292.20 ABA79007.1 - 1.3e-22 80.3 13.1 5.9e-22 78.1 13.1 1.8 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 ABA79007.1 - 0.1 13.2 8.7 0.65 10.6 2.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) Lon_C PF05362.13 ABA79008.1 - 1.9e-95 318.2 1.6 3.2e-95 317.5 1.6 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 ABA79008.1 - 1.4e-39 136.1 0.4 3e-39 135.1 0.0 1.8 2 0 0 2 2 2 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 ABA79008.1 - 5.7e-22 78.5 0.0 1.8e-21 77.0 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA79008.1 - 1.1e-07 31.9 0.0 2.6e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 ABA79008.1 - 9.5e-07 28.7 0.0 2.4e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_PrkA PF08298.11 ABA79008.1 - 4.4e-06 25.9 0.0 8.5e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_22 PF13401.6 ABA79008.1 - 8.8e-05 22.8 0.3 0.0029 17.9 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 ABA79008.1 - 0.0014 19.1 0.1 0.0014 19.1 0.1 3.8 4 1 1 5 5 5 1 AAA ATPase domain AAA_14 PF13173.6 ABA79008.1 - 0.002 18.2 0.0 0.0045 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 ABA79008.1 - 0.0029 17.3 0.0 0.0065 16.2 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 ABA79008.1 - 0.0047 17.1 0.0 0.017 15.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 ABA79008.1 - 0.0048 16.6 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 ABA79008.1 - 0.009 15.9 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 ABA79008.1 - 0.011 16.2 1.4 0.033 14.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 ABA79008.1 - 0.013 15.7 1.3 0.023 14.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA79008.1 - 0.076 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 ABA79008.1 - 0.11 12.4 1.6 9.1 6.2 0.1 2.9 2 1 1 3 3 3 0 NTPase TsaE PF02367.17 ABA79008.1 - 0.12 12.4 0.0 0.34 10.9 0.0 1.8 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 ABA79008.1 - 0.25 11.9 1.2 4.6 7.8 0.0 2.8 2 1 1 3 3 3 0 ABC transporter ECH_2 PF16113.5 ABA79008.1 - 0.73 9.3 6.8 0.59 9.6 3.0 2.5 2 1 1 3 3 3 0 Enoyl-CoA hydratase/isomerase FUSC PF04632.12 ABA79008.1 - 0.97 7.9 5.1 2 6.8 4.7 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family CCDC-167 PF15188.6 ABA79008.1 - 9.8 6.6 10.0 1.5 9.2 2.6 2.9 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Oxidored_FMN PF00724.20 ABA79009.1 - 2.7e-88 296.5 0.0 3e-88 296.4 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family AP_endonuc_2 PF01261.24 ABA79009.1 - 0.0044 16.5 0.6 0.054 12.9 0.0 2.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel TGT PF01702.18 ABA79010.1 - 2.7e-141 470.8 0.0 3.3e-141 470.5 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PDH_E1_M PF17831.1 ABA79010.1 - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Pyruvate dehydrogenase E1 component middle domain ACR_tran PF00873.19 ABA79011.2 - 7.5e-274 911.1 22.2 8.5e-274 910.9 22.2 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 ABA79011.2 - 5.3e-16 58.5 33.0 1.3e-10 40.7 17.5 2.3 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 ABA79011.2 - 0.0015 17.9 33.0 0.049 13.0 7.5 3.4 3 0 0 3 3 3 2 Protein export membrane protein SLATT_3 PF18184.1 ABA79011.2 - 0.046 13.9 0.8 0.32 11.1 0.8 2.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 HlyD_D23 PF16576.5 ABA79012.1 - 7.4e-25 87.4 2.2 1.3e-24 86.7 2.2 1.3 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 ABA79012.1 - 1.7e-21 76.9 2.0 4.4e-16 59.5 0.2 2.7 1 1 1 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 ABA79012.1 - 3.1e-06 26.9 0.5 3.1e-06 26.9 0.5 2.8 3 0 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 ABA79012.1 - 6.2e-05 22.7 1.0 0.41 10.5 0.0 3.2 3 0 0 3 3 3 2 Biotin-requiring enzyme HlyD PF00529.20 ABA79012.1 - 0.013 15.4 5.6 0.5 10.3 5.6 2.4 1 1 0 1 1 1 0 HlyD membrane-fusion protein of T1SS RseA_C PF03873.13 ABA79012.1 - 0.27 11.5 5.7 2.7 8.3 0.2 2.6 2 0 0 2 2 2 0 Anti sigma-E protein RseA, C-terminal domain OEP PF02321.18 ABA79012.1 - 0.75 9.6 11.5 1.2 8.9 11.5 1.3 1 0 0 1 1 1 0 Outer membrane efflux protein TetR_N PF00440.23 ABA79013.2 - 1.4e-11 44.0 0.1 3.1e-11 42.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_28 PF17937.1 ABA79013.2 - 5.6e-06 26.7 0.2 5.6e-06 26.7 0.2 2.2 2 1 1 3 3 3 1 Tetracyclin repressor-like, C-terminal domain HTH_20 PF12840.7 ABA79013.2 - 0.065 13.3 1.0 0.37 10.9 0.0 2.8 3 1 0 3 3 3 0 Helix-turn-helix domain Phage_TAC_11 PF11836.8 ABA79014.1 - 0.035 14.2 3.7 0.8 9.9 0.4 2.4 2 0 0 2 2 2 0 Phage tail tube protein, GTA-gp10 Sigma54_activat PF00158.26 ABA79015.1 - 5.2e-59 198.7 0.0 8.8e-59 198.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 ABA79015.1 - 2.4e-15 56.9 0.0 5.5e-15 55.7 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA79015.1 - 7.7e-14 51.2 0.1 2.1e-13 49.8 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family GAF PF01590.26 ABA79015.1 - 1.2e-09 38.8 0.0 5.2e-09 36.8 0.0 2.1 2 0 0 2 2 2 1 GAF domain Mg_chelatase PF01078.21 ABA79015.1 - 7e-07 28.8 0.1 1.2e-05 24.8 0.1 2.2 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 ABA79015.1 - 6.9e-06 26.1 0.0 1.8e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA79015.1 - 2.5e-05 24.7 0.0 0.00017 22.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HTH_50 PF18024.1 ABA79015.1 - 0.00054 19.5 0.1 0.0012 18.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_22 PF13309.6 ABA79015.1 - 0.0016 18.4 0.0 0.0037 17.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_30 PF13556.6 ABA79015.1 - 0.005 16.6 0.3 0.016 15.0 0.3 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 ABA79015.1 - 0.0058 16.7 0.9 0.038 14.1 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA79015.1 - 0.0093 15.7 0.2 0.044 13.6 0.2 2.1 1 0 0 1 1 1 1 Homeodomain-like domain HTH_17 PF12728.7 ABA79015.1 - 0.012 15.7 0.1 0.026 14.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 ABA79015.1 - 0.03 13.7 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 AAA_2 PF07724.14 ABA79015.1 - 0.039 14.1 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) HTH_29 PF13551.6 ABA79015.1 - 0.047 13.7 0.8 0.34 11.0 0.1 2.6 2 0 0 2 2 2 0 Winged helix-turn helix DUF2089 PF09862.9 ABA79015.1 - 0.054 13.5 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) MCM PF00493.23 ABA79015.1 - 0.062 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain HTH_7 PF02796.15 ABA79015.1 - 0.065 13.3 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase AAA_16 PF13191.6 ABA79015.1 - 0.099 13.0 0.4 1.9 8.8 0.1 2.7 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 ABA79015.1 - 0.11 12.7 0.1 2 8.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 ABA79015.1 - 0.12 11.6 0.0 0.64 9.2 0.0 1.9 2 0 0 2 2 2 0 TIP49 P-loop domain HTH_AraC PF00165.23 ABA79015.1 - 0.17 12.0 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family ADH_N PF08240.12 ABA79016.1 - 4.6e-31 106.9 0.3 8.7e-31 106.0 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA79016.1 - 1e-20 74.0 0.2 1.6e-20 73.4 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA79016.1 - 1.7e-09 38.9 0.0 2.6e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 ABA79016.1 - 0.062 12.8 0.1 0.095 12.2 0.1 1.2 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus Cpn60_TCP1 PF00118.24 ABA79017.1 - 3.4e-74 250.3 6.3 1.1e-72 245.3 6.3 2.0 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family FeS_assembly_P PF01883.19 ABA79018.1 - 7.8e-13 48.4 0.0 1.7e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Amidohydro_2 PF04909.14 ABA79019.1 - 2.9e-48 165.1 0.7 3.3e-48 165.0 0.7 1.0 1 0 0 1 1 1 1 Amidohydrolase MmoB_DmpM PF02406.17 ABA79020.1 - 1.6e-26 92.3 0.2 2.1e-26 92.0 0.2 1.1 1 0 0 1 1 1 1 MmoB/DmpM family Phenol_Hydrox PF02332.18 ABA79021.1 - 9.1e-74 247.9 4.4 1.2e-73 247.5 4.4 1.1 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase NAD_binding_1 PF00175.21 ABA79022.1 - 6.5e-19 68.6 0.0 2.4e-18 66.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain Fer2 PF00111.27 ABA79022.1 - 1.9e-15 56.5 0.5 3.5e-15 55.7 0.5 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.24 ABA79022.1 - 7.9e-15 55.0 0.0 1.5e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_4 PF13510.6 ABA79022.1 - 0.00087 19.3 0.0 0.0038 17.2 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_6 PF08030.12 ABA79022.1 - 0.015 15.4 0.0 0.15 12.2 0.0 2.2 2 0 0 2 2 2 0 Ferric reductase NAD binding domain Phenol_Hydrox PF02332.18 ABA79023.1 - 4.3e-60 203.1 0.6 9.4e-60 202.0 0.1 1.8 2 0 0 2 2 2 1 Methane/Phenol/Toluene Hydroxylase IQ PF00612.27 ABA79024.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 IQ calmodulin-binding motif DUF2559 PF10832.8 ABA79025.1 - 0.083 13.0 3.1 2.7 8.1 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2559) ANAPC4_WD40 PF12894.7 ABA79026.1 - 7e-05 23.1 0.0 0.0013 19.0 0.0 2.8 3 1 0 3 3 3 1 Anaphase-promoting complex subunit 4 WD40 domain Sigma54_DBD PF04552.13 ABA79028.1 - 1.6e-38 131.9 0.0 2.7e-38 131.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 ABA79028.1 - 4.2e-36 124.5 0.0 5.9e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 ABA79028.1 - 0.0017 18.2 0.0 0.0035 17.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) HTH_IclR PF09339.10 ABA79028.1 - 0.0072 16.1 5.9 1.1 9.1 0.2 4.9 4 0 0 4 4 4 1 IclR helix-turn-helix domain HTH_29 PF13551.6 ABA79028.1 - 0.016 15.2 0.1 10 6.2 0.0 3.4 2 1 0 2 2 2 0 Winged helix-turn helix IMPDH PF00478.25 ABA79029.1 - 3e-152 506.6 11.2 3.4e-152 506.4 11.2 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 ABA79029.1 - 4e-16 59.2 0.1 5.4e-10 39.6 0.0 2.6 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 ABA79029.1 - 3.5e-11 43.1 15.4 9.5e-08 31.8 12.5 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 ABA79029.1 - 0.005 15.9 14.3 0.005 15.9 14.3 2.5 3 1 0 3 3 3 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 ABA79029.1 - 0.06 12.8 7.1 2.2 7.7 7.1 2.7 1 1 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 ABA79029.1 - 0.16 11.3 12.1 0.095 12.0 7.0 2.4 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 ABA79029.1 - 0.2 10.9 6.9 0.039 13.2 2.1 1.9 1 1 0 2 2 2 0 Dihydroorotate dehydrogenase NanE PF04131.14 ABA79029.1 - 4.7 6.4 9.9 1.2 8.3 4.9 2.6 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DeoC PF01791.9 ABA79029.1 - 4.7 6.7 10.7 3.2 7.3 7.9 2.0 2 1 0 2 2 2 0 DeoC/LacD family aldolase ABC_tran PF00005.27 ABA79031.1 - 1.2e-32 113.3 0.0 1.8e-32 112.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 ABA79031.1 - 3.9e-08 34.0 0.1 2.1e-07 31.6 0.1 2.4 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 ABA79031.1 - 9.4e-06 25.6 0.0 0.0049 16.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA79031.1 - 1.5e-05 25.0 0.1 0.0004 20.3 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase TOBE_2 PF08402.10 ABA79031.1 - 0.0003 20.9 0.4 0.0013 18.8 0.2 2.3 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.6 ABA79031.1 - 0.00045 20.6 0.1 0.00071 20.0 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 ABA79031.1 - 0.0026 17.9 0.0 0.0043 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA79031.1 - 0.0039 17.7 0.0 0.0058 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA79031.1 - 0.0067 16.2 0.0 0.0093 15.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA79031.1 - 0.0083 16.4 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA79031.1 - 0.01 15.5 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 ABA79031.1 - 0.011 15.7 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 ABA79031.1 - 0.022 15.0 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA79031.1 - 0.025 14.2 0.0 0.059 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 ABA79031.1 - 0.031 13.7 0.0 0.42 10.0 0.0 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain TOBE PF03459.17 ABA79031.1 - 0.032 14.5 2.0 7.9 6.9 0.1 3.3 3 0 0 3 3 3 0 TOBE domain AAA PF00004.29 ABA79031.1 - 0.033 14.6 0.1 0.064 13.7 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 ABA79031.1 - 0.063 13.2 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 ABA79031.1 - 0.077 12.9 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 ABA79031.1 - 0.1 12.3 0.0 0.18 11.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA79031.1 - 0.1 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 ABA79031.1 - 0.12 12.8 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 ABA79031.1 - 0.13 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 ABA79032.1 - 9.7e-13 48.2 20.8 9.7e-13 48.2 20.8 2.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1491 PF07372.12 ABA79032.1 - 0.14 12.5 0.1 0.25 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1491) BPD_transp_1 PF00528.22 ABA79033.1 - 4.5e-13 49.3 16.8 4.5e-13 49.3 16.8 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 ABA79034.1 - 7.8e-17 62.2 5.6 1.7e-16 61.1 5.6 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA79034.1 - 2.1e-10 40.9 0.2 4.2e-10 39.9 0.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA79034.1 - 5.9e-05 22.9 0.5 0.3 10.8 0.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Glyco_hydro_1 PF00232.18 ABA79035.1 - 2.7e-137 457.9 0.0 3.6e-137 457.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 ABA79035.1 - 0.092 12.2 0.0 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Glucokinase PF02685.16 ABA79036.1 - 2.3e-75 253.6 0.2 2.5e-75 253.4 0.2 1.0 1 0 0 1 1 1 1 Glucokinase TetR_C_31 PF17940.1 ABA79036.1 - 0.27 11.4 10.8 1.6 9.0 1.5 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain FAD_binding_5 PF00941.21 ABA79037.1 - 5.1e-39 133.7 0.0 6.5e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 ABA79037.1 - 4.1e-05 23.7 0.2 0.00016 21.8 0.2 2.1 1 1 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 ABA79038.1 - 2.2e-178 594.2 0.1 2.7e-178 593.9 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 ABA79038.1 - 9.5e-27 93.5 0.0 2.1e-26 92.4 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HHH_2 PF12826.7 ABA79038.1 - 0.12 12.5 0.2 0.33 11.1 0.2 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Fer2_2 PF01799.20 ABA79039.1 - 1.4e-31 108.3 5.0 2.3e-31 107.6 0.2 2.1 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 ABA79039.1 - 3.7e-06 26.8 0.9 3.7e-06 26.8 0.9 2.2 1 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 ABA79039.1 - 1.3e-05 25.2 1.5 4e-05 23.6 1.0 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 ABA79039.1 - 1.7e-05 24.8 4.0 1.7e-05 24.8 1.8 2.2 2 2 1 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_S11 PF00768.20 ABA79039.1 - 0.037 13.5 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase ClpS PF02617.17 ABA79039.1 - 0.055 13.3 0.2 0.12 12.2 0.2 1.6 1 0 0 1 1 1 0 ATP-dependent Clp protease adaptor protein ClpS COXG PF06240.13 ABA79040.1 - 7.4e-37 126.2 0.0 8.5e-37 126.0 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 ABA79040.1 - 1.1e-09 38.7 0.0 1.6e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 ABA79040.1 - 8.3e-05 22.8 0.0 0.00013 22.1 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 ABA79040.1 - 0.002 18.3 0.0 0.0031 17.7 0.0 1.4 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF2505 PF10698.9 ABA79040.1 - 0.019 15.0 1.8 20 5.2 0.0 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2505) PAS_7 PF12860.7 ABA79041.1 - 5.7e-43 145.7 0.1 1.4e-28 99.3 0.0 2.9 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 ABA79041.1 - 3.4e-18 66.2 0.0 6.3e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA79041.1 - 3.1e-13 49.9 0.0 1.1e-12 48.2 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 ABA79041.1 - 2.6e-10 40.2 0.1 2.6e-10 40.2 0.1 3.8 4 1 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 ABA79041.1 - 4.7e-05 23.3 0.4 0.34 11.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 ABA79041.1 - 0.00073 19.8 0.2 0.0099 16.1 0.1 2.8 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 ABA79041.1 - 0.14 12.1 0.2 0.7 9.9 0.0 2.2 2 0 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.6 ABA79041.1 - 0.22 11.5 2.7 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DHR10 PF18595.1 ABA79041.1 - 2.3 8.3 10.5 4.7 7.3 6.6 2.6 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FIST PF08495.10 ABA79042.1 - 3e-36 125.0 0.2 1.1e-35 123.2 0.1 1.9 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 ABA79042.1 - 2.1e-16 60.1 1.3 4e-13 49.5 0.1 2.7 3 0 0 3 3 3 2 FIST C domain Response_reg PF00072.24 ABA79043.1 - 5e-21 75.0 0.0 7.9e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 ABA79043.1 - 1e-19 69.8 0.8 2e-19 68.9 0.8 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA79043.1 - 0.0027 17.3 3.2 0.0035 17.0 1.5 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 DUF2089 PF09862.9 ABA79043.1 - 0.018 15.1 0.1 0.031 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) TadZ_N PF16968.5 ABA79043.1 - 0.022 14.4 1.2 0.031 14.0 0.6 1.5 2 0 0 2 2 2 0 Pilus assembly protein TadZ N-terminal Hs1pro-1_N PF07231.12 ABA79043.1 - 0.028 14.2 0.1 0.042 13.6 0.1 1.3 1 0 0 1 1 1 0 Hs1pro-1 N-terminus PGM_PMM_I PF02878.16 ABA79044.1 - 1.1e-33 115.8 0.0 1.9e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 ABA79044.1 - 2.1e-31 108.5 0.0 3.7e-31 107.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 ABA79044.1 - 1.1e-13 51.6 0.0 2.9e-13 50.3 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 ABA79044.1 - 2.8e-13 49.8 0.0 9.5e-13 48.1 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CBM_48 PF02922.18 ABA79045.1 - 3.5e-21 75.3 0.0 6.5e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 ABA79045.1 - 1.5e-15 57.6 0.0 1.7e-09 37.7 0.0 3.2 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Glyco_transf_5 PF08323.11 ABA79046.2 - 7.9e-70 235.3 0.0 3.3e-69 233.3 0.0 1.8 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 ABA79046.2 - 1.2e-10 42.1 1.4 1.2e-10 42.1 1.4 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 ABA79046.2 - 6.8e-09 35.9 0.1 5.6e-08 33.0 0.1 2.6 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 ABA79046.2 - 1.6e-07 31.0 0.0 2.8e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA79046.2 - 1e-06 29.2 0.0 1.9e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 NTP_transferase PF00483.23 ABA79047.1 - 9.5e-64 215.3 0.0 1.3e-63 214.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 ABA79047.1 - 8e-06 26.3 0.0 1.4e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Esterase_phd PF10503.9 ABA79047.1 - 0.12 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase Phosphorylase PF00343.20 ABA79048.1 - 3.9e-290 964.2 0.0 4.5e-290 964.0 0.0 1.0 1 0 0 1 1 1 1 Carbohydrate phosphorylase AAA_17 PF13207.6 ABA79048.1 - 0.036 14.5 0.0 0.07 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rrf2 PF02082.20 ABA79049.1 - 2.4e-19 69.5 0.0 3.2e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.6 ABA79049.1 - 0.093 13.2 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 ABA79049.1 - 0.15 11.9 0.3 0.34 10.8 0.1 1.6 2 0 0 2 2 2 0 MarR family MerR-DNA-bind PF09278.11 ABA79050.1 - 2.2e-20 72.9 3.3 3e-20 72.5 3.3 1.2 1 0 0 1 1 1 1 MerR, DNA binding MerR_1 PF13411.6 ABA79050.1 - 1.5e-17 63.4 0.0 2.9e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 ABA79050.1 - 6.9e-15 54.5 1.0 1.2e-14 53.7 0.4 1.7 2 0 0 2 2 2 1 MerR family regulatory protein Death PF00531.22 ABA79050.1 - 0.065 13.4 0.2 0.27 11.4 0.2 2.1 1 1 0 1 1 1 0 Death domain CEP209_CC5 PF16574.5 ABA79050.1 - 0.11 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 DUF1294 PF06961.13 ABA79050.1 - 0.11 12.7 0.1 11 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) E1-E2_ATPase PF00122.20 ABA79051.1 - 1.4e-53 181.2 3.9 3.4e-53 179.9 3.9 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 ABA79051.1 - 7.1e-38 131.0 1.0 7.1e-38 131.0 1.0 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 ABA79051.1 - 4.2e-26 91.2 0.0 1.2e-12 48.1 0.0 2.5 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 ABA79051.1 - 0.0002 21.2 2.5 0.00039 20.2 1.6 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA79051.1 - 0.042 14.3 0.8 0.21 11.9 0.3 2.6 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase HMA PF00403.26 ABA79052.1 - 3.9e-12 46.4 0.0 4.3e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain NDK PF00334.19 ABA79054.1 - 7.2e-51 171.7 0.0 8e-51 171.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase PTAC PF06130.12 ABA79054.1 - 0.048 13.8 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphate propanoyltransferase ABC_tran PF00005.27 ABA79055.1 - 6.2e-44 149.8 0.2 1e-20 74.6 0.0 2.6 3 0 0 3 3 2 2 ABC transporter ABC_tran_Xtn PF12848.7 ABA79055.1 - 3e-24 84.8 3.6 3e-24 84.8 3.6 2.2 3 0 0 3 3 1 1 ABC transporter AAA_21 PF13304.6 ABA79055.1 - 2.3e-14 53.9 9.5 2.5e-06 27.6 0.4 4.3 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79055.1 - 5.9e-07 29.1 1.4 0.036 13.5 0.0 4.2 3 1 1 4 4 4 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 ABA79055.1 - 3.6e-05 23.8 0.1 0.26 11.4 0.0 2.6 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 ABA79055.1 - 4.5e-05 23.1 0.2 0.26 11.1 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA79055.1 - 0.00012 22.0 0.1 0.32 10.9 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase ABC_tran_CTD PF16326.5 ABA79055.1 - 0.00014 22.0 6.6 0.00014 22.0 6.6 2.9 3 0 0 3 3 2 1 ABC transporter C-terminal domain RNA_helicase PF00910.22 ABA79055.1 - 0.0011 19.3 0.3 0.41 11.1 0.0 3.0 3 0 0 3 3 3 1 RNA helicase AAA PF00004.29 ABA79055.1 - 0.0012 19.3 0.3 0.77 10.2 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 ABA79055.1 - 0.0012 19.4 0.0 1.5 9.4 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 ABA79055.1 - 0.0012 18.5 10.0 0.036 13.8 0.4 3.2 3 2 0 3 3 2 2 AAA domain NACHT PF05729.12 ABA79055.1 - 0.0022 17.9 0.5 1.4 8.9 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 ABA79055.1 - 0.0024 17.9 0.5 1.4 8.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 ABA79055.1 - 0.0041 15.8 6.7 0.39 9.3 0.1 3.1 4 0 0 4 4 4 2 AAA domain TsaE PF02367.17 ABA79055.1 - 0.0042 17.1 0.2 4 7.5 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 ABA79055.1 - 0.0048 17.2 2.5 1.2 9.4 0.0 3.3 3 1 0 3 3 2 1 AAA domain AAA_33 PF13671.6 ABA79055.1 - 0.0084 16.3 4.5 1.6 8.9 0.0 4.1 3 2 0 3 3 3 1 AAA domain SbcCD_C PF13558.6 ABA79055.1 - 0.0084 16.3 0.9 0.16 12.2 0.2 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.9 ABA79055.1 - 0.0085 15.8 0.4 2 8.2 0.1 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 ABA79055.1 - 0.01 14.9 1.6 1.2 8.0 0.3 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 ABA79055.1 - 0.011 14.9 0.4 1.9 7.6 0.3 2.3 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.17 ABA79055.1 - 0.013 15.2 0.6 4.6 6.9 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein RuvB_N PF05496.12 ABA79055.1 - 0.015 15.1 0.4 5.6 6.7 0.0 3.0 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 ABA79055.1 - 0.015 14.9 1.8 5.4 6.5 0.1 3.4 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 ABA79055.1 - 0.021 14.7 1.3 2 8.3 0.0 2.9 3 0 0 3 3 2 0 NTPase MobB PF03205.14 ABA79055.1 - 0.022 14.7 1.3 0.7 9.8 0.3 3.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 ABA79055.1 - 0.024 15.1 6.8 0.1 13.1 0.1 3.0 4 0 0 4 4 3 0 AAA domain AAA_15 PF13175.6 ABA79055.1 - 0.055 13.2 0.2 7 6.2 0.1 2.9 3 0 0 3 3 3 0 AAA ATPase domain AAA_24 PF13479.6 ABA79055.1 - 0.063 13.0 0.1 5.5 6.7 0.1 2.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 ABA79055.1 - 0.063 13.7 9.4 4.1 7.7 0.3 3.4 2 1 0 2 2 2 0 AAA ATPase domain DUF87 PF01935.17 ABA79055.1 - 0.079 13.0 3.5 1.4 8.9 0.0 2.9 3 0 0 3 3 3 0 Helicase HerA, central domain Mg_chelatase PF01078.21 ABA79055.1 - 0.11 11.9 0.3 12 5.2 0.1 3.0 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 ABA79055.1 - 0.13 11.8 0.1 4.5 6.8 0.1 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 ABA79055.1 - 0.13 11.9 0.1 27 4.4 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain Roc PF08477.13 ABA79055.1 - 0.14 12.4 0.4 12 6.1 0.1 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 ABA79055.1 - 0.16 12.2 2.8 9 6.5 0.0 3.4 4 0 0 4 4 3 0 AAA domain DUF815 PF05673.13 ABA79055.1 - 0.18 10.9 2.6 1.9 7.6 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF815) DUF4936 PF16290.5 ABA79055.1 - 1.8 9.3 4.9 0.97 10.2 1.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4936) SRP54 PF00448.22 ABA79055.1 - 5.9 6.5 7.8 12 5.4 0.0 3.1 4 0 0 4 4 4 0 SRP54-type protein, GTPase domain MarC PF01914.17 ABA79056.1 - 1.5e-55 187.8 10.5 1.8e-55 187.5 10.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 ABA79056.1 - 0.0013 18.5 6.5 0.0024 17.6 6.5 1.5 1 1 0 1 1 1 1 Integral membrane protein TerC family MFS_1 PF07690.16 ABA79056.1 - 0.018 14.0 16.2 0.032 13.1 16.2 1.4 1 1 0 1 1 1 0 Major Facilitator Superfamily gag-asp_proteas PF13975.6 ABA79057.1 - 7.1e-22 77.8 0.0 9.2e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 ABA79057.1 - 5.6e-18 65.4 0.0 7.4e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease Asp_protease PF09668.10 ABA79057.1 - 0.0031 17.3 0.0 0.01 15.7 0.0 1.7 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.20 ABA79057.1 - 0.076 13.3 0.0 0.25 11.6 0.0 1.8 1 1 0 1 1 1 0 Retroviral aspartyl protease DNA_pol3_chi PF04364.13 ABA79058.1 - 1.3e-27 96.6 0.0 1.4e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase III chi subunit, HolC Peptidase_M17 PF00883.21 ABA79059.1 - 6.5e-120 400.1 0.9 1.1e-119 399.3 0.3 1.6 2 0 0 2 2 2 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 ABA79059.1 - 0.0021 17.9 2.0 0.0054 16.6 2.0 1.7 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain LptF_LptG PF03739.14 ABA79060.1 - 2.9e-55 187.5 9.6 3.4e-55 187.3 9.6 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG LptF_LptG PF03739.14 ABA79061.1 - 5.3e-56 190.0 5.6 6.2e-56 189.7 5.6 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG LptD PF04453.14 ABA79062.1 - 6.4e-44 150.7 0.0 2.5e-39 135.6 0.0 2.1 1 1 1 2 2 2 2 LPS transport system D Rotamase PF00639.21 ABA79063.2 - 1.3e-14 54.9 0.0 1e-12 48.9 0.0 2.9 3 0 0 3 3 3 1 PPIC-type PPIASE domain SurA_N PF09312.11 ABA79063.2 - 1.8e-10 40.9 0.4 1.2e-09 38.2 0.4 2.2 1 1 0 1 1 1 1 SurA N-terminal domain Rotamase_3 PF13616.6 ABA79063.2 - 3.3e-10 40.5 0.0 1.1e-09 38.8 0.0 1.8 2 0 0 2 2 2 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 ABA79063.2 - 3.9e-09 37.4 0.5 7e-06 26.9 0.0 3.1 3 0 0 3 3 3 2 PPIC-type PPIASE domain SurA_N_3 PF13624.6 ABA79063.2 - 2.2e-06 27.6 1.8 1.6e-05 24.7 0.7 2.7 2 1 0 2 2 2 1 SurA N-terminal domain SurA_N_2 PF13623.6 ABA79063.2 - 0.00072 19.4 0.9 0.0018 18.2 0.9 1.7 1 1 0 1 1 1 1 SurA N-terminal domain Trigger_C PF05698.14 ABA79063.2 - 0.03 14.3 0.2 0.14 12.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) C-terminus RAG1 PF12940.7 ABA79063.2 - 0.072 11.2 0.0 0.11 10.6 0.0 1.1 1 0 0 1 1 1 0 Recombination-activation protein 1 (RAG1), recombinase HNH_repeat PF18780.1 ABA79063.2 - 0.28 11.0 4.4 7.4 6.5 0.1 3.3 3 0 0 3 3 3 0 Homing endonuclease repeat PdxA PF04166.12 ABA79064.1 - 1.1e-102 343.3 0.0 1.3e-102 343.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Iso_dh PF00180.20 ABA79064.1 - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase RrnaAD PF00398.20 ABA79065.1 - 6.2e-46 156.6 0.0 7.6e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 ABA79065.1 - 0.0012 19.5 0.0 0.0026 18.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79065.1 - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF4167 PF13763.6 ABA79066.1 - 2.2e-29 101.4 0.1 2.2e-29 101.4 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4167) PrmC_N PF17827.1 ABA79067.1 - 7.8e-17 61.6 1.5 1.5e-16 60.7 1.5 1.5 1 0 0 1 1 1 1 PrmC N-terminal domain MTS PF05175.14 ABA79067.1 - 3.9e-16 59.1 0.0 1.8e-14 53.6 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 ABA79067.1 - 8.4e-12 45.1 0.0 1.3e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA79067.1 - 3.3e-08 34.1 0.1 1.7e-07 31.8 0.0 2.3 3 0 0 3 3 2 1 Methyltransferase domain PrmA PF06325.13 ABA79067.1 - 3.4e-08 33.2 0.0 4.9e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 ABA79067.1 - 5e-07 29.8 0.0 7.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA79067.1 - 3.5e-05 24.5 0.2 0.00063 20.4 0.0 2.8 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79067.1 - 0.0006 19.7 0.0 0.0055 16.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 ABA79067.1 - 0.00068 19.3 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 ABA79067.1 - 0.0012 19.5 0.2 0.0052 17.4 0.0 2.1 2 1 1 3 3 2 1 Methyltransferase domain UPF0020 PF01170.18 ABA79067.1 - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.20 ABA79067.1 - 0.0027 17.1 0.0 0.0089 15.3 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase TrmK PF04816.12 ABA79067.1 - 0.0039 16.8 0.0 0.0053 16.3 0.0 1.1 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_15 PF09445.10 ABA79067.1 - 0.006 16.2 0.0 0.0082 15.7 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.18 ABA79067.1 - 0.0068 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_16 PF10294.9 ABA79067.1 - 0.023 14.4 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_10 PF05971.12 ABA79067.1 - 0.043 13.1 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase PCRF PF03462.18 ABA79068.1 - 2.6e-67 226.5 0.0 4e-67 225.8 0.0 1.3 1 0 0 1 1 1 1 PCRF domain RF-1 PF00472.20 ABA79068.1 - 8.4e-39 132.1 0.3 2.2e-38 130.7 0.4 1.6 2 0 0 2 2 2 1 RF-1 domain MIR PF02815.19 ABA79068.1 - 0.15 11.9 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 MIR domain DUF1499 PF07386.11 ABA79069.1 - 1e-14 55.1 0.0 1.2e-14 54.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1499) Arginase PF00491.21 ABA79070.1 - 2.4e-82 276.6 0.7 3e-82 276.3 0.7 1.0 1 0 0 1 1 1 1 Arginase family Peptidase_M20 PF01546.28 ABA79071.1 - 1.1e-32 113.5 1.2 1.4e-32 113.1 1.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA79071.1 - 2.8e-08 33.6 0.0 7.1e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain MazG PF03819.17 ABA79072.1 - 1.9e-35 120.8 1.6 3e-26 91.4 0.0 2.3 2 0 0 2 2 2 2 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 ABA79072.1 - 2.5e-10 40.6 4.2 1.4e-05 25.4 0.1 2.6 3 0 0 3 3 3 2 Phosphoribosyl-ATP pyrophosphohydrolase PaaB PF06243.11 ABA79072.1 - 0.058 13.6 0.1 0.11 12.7 0.1 1.5 1 0 0 1 1 1 0 Phenylacetic acid degradation B DUF900 PF05990.12 ABA79072.1 - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) SBP_bac_6 PF13343.6 ABA79073.1 - 1.4e-22 80.3 0.0 2e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA79073.1 - 1.2e-19 71.3 0.0 1.8e-19 70.6 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA79073.1 - 1.4e-16 61.3 0.0 1.9e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA79073.1 - 5.2e-16 59.1 0.1 8.4e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein IU_nuc_hydro PF01156.19 ABA79074.1 - 1.6e-94 316.9 0.0 1.8e-94 316.7 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase HATPase_c PF02518.26 ABA79075.1 - 3.7e-24 85.4 0.0 5.6e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA79075.1 - 1.2e-18 66.9 0.4 3.2e-18 65.5 0.4 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 ABA79075.1 - 0.00012 22.3 1.4 0.0006 20.1 0.2 2.6 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 ABA79075.1 - 0.00086 19.3 0.0 0.0045 16.9 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 ABA79075.1 - 0.0019 18.1 0.1 0.04 13.8 0.1 2.2 1 1 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 ABA79075.1 - 0.0068 16.4 0.0 0.017 15.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 ABA79075.1 - 0.0093 16.2 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 ABA79075.1 - 0.13 12.3 0.0 0.36 10.9 0.0 1.8 1 1 0 1 1 1 0 PAS fold Cys_Met_Meta_PP PF01053.20 ABA79077.1 - 1.4e-96 323.4 0.0 1.6e-96 323.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 ABA79077.1 - 5.1e-08 32.5 0.0 9.3e-08 31.6 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 ABA79077.1 - 4.1e-06 26.0 0.0 6.4e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 ABA79077.1 - 0.0012 17.5 0.0 0.019 13.5 0.0 2.0 1 1 0 1 1 1 1 Methionine gamma-lyase Beta_elim_lyase PF01212.21 ABA79077.1 - 0.11 11.8 0.3 0.55 9.5 0.3 2.1 1 1 0 1 1 1 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 ABA79077.1 - 0.32 10.2 1.5 0.69 9.2 0.7 1.8 2 1 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Hexapep PF00132.24 ABA79078.1 - 7.5e-17 60.3 8.4 1.4e-09 37.3 0.8 4.1 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA79078.1 - 8.5e-06 25.4 0.7 8.5e-06 25.4 0.7 3.9 3 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Guanylate_kin PF00625.21 ABA79079.1 - 5.1e-48 163.2 0.0 6e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Guanylate kinase AAA_33 PF13671.6 ABA79079.1 - 0.0049 17.0 0.0 0.037 14.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA79079.1 - 0.014 15.7 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA79079.1 - 0.06 13.4 0.0 0.073 13.2 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase YicC_N PF03755.13 ABA79080.1 - 8.5e-35 120.4 0.3 4e-34 118.3 0.0 2.0 2 0 0 2 2 2 1 YicC-like family, N-terminal region DUF1732 PF08340.11 ABA79080.1 - 2.5e-32 110.7 0.3 5.6e-32 109.6 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1732) Laminin_II PF06009.12 ABA79080.1 - 0.011 15.7 1.1 3.1 7.8 0.1 2.5 2 1 0 2 2 2 0 Laminin Domain II PAS_5 PF07310.13 ABA79081.1 - 3.2e-41 140.3 0.0 4.2e-41 139.9 0.0 1.2 1 0 0 1 1 1 1 PAS domain DAHP_synth_2 PF01474.16 ABA79082.1 - 8.9e-200 663.8 0.0 1e-199 663.6 0.0 1.0 1 0 0 1 1 1 1 Class-II DAHP synthetase family HTH_18 PF12833.7 ABA79083.1 - 7.1e-26 90.3 0.8 1.4e-25 89.4 0.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DJ-1_PfpI PF01965.24 ABA79083.1 - 1.5e-18 67.1 0.0 2e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_AraC PF00165.23 ABA79083.1 - 6.2e-17 61.2 0.0 5.4e-07 29.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Asp_decarbox PF02261.16 ABA79083.1 - 0.08 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Aspartate decarboxylase ORF6N PF10543.9 ABA79083.1 - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 ORF6N domain Sigma70_r3 PF04539.16 ABA79083.1 - 0.11 12.6 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 Peripla_BP_6 PF13458.6 ABA79084.1 - 1.1e-43 150.2 14.8 1.4e-43 149.9 14.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 ABA79084.1 - 1.7e-26 93.2 0.0 3.4e-26 92.2 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 ABA79084.1 - 2.7e-08 33.2 0.4 4.1e-08 32.6 0.1 1.5 2 0 0 2 2 2 1 Periplasmic binding protein domain ABC_tran PF00005.27 ABA79085.1 - 9.6e-28 97.4 0.0 1.4e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 ABA79085.1 - 3e-11 43.0 0.2 6.6e-11 41.9 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 ABA79085.1 - 7.1e-06 26.0 1.8 0.00077 19.4 0.9 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79085.1 - 9.3e-05 22.0 0.1 0.067 12.6 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA79085.1 - 0.00023 21.7 0.6 0.00039 21.0 0.6 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 ABA79085.1 - 0.00098 19.6 0.1 0.018 15.5 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 ABA79085.1 - 0.002 17.8 0.2 0.0046 16.7 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA79085.1 - 0.015 15.2 0.4 0.03 14.3 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 ABA79085.1 - 0.023 14.1 0.1 0.14 11.5 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 ABA79085.1 - 0.035 13.8 0.0 0.13 12.0 0.0 1.8 1 1 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 ABA79085.1 - 0.065 13.2 0.2 1.9 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 ABA79085.1 - 0.066 13.3 0.3 0.24 11.5 0.1 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.6 ABA79085.1 - 0.084 13.2 0.0 0.13 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 ABA79085.1 - 0.1 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 ABA79085.1 - 0.13 12.5 0.2 0.33 11.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA79086.1 - 1.3e-31 110.0 0.0 1.8e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79086.1 - 1.4e-09 38.2 0.0 4.4e-05 23.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA79086.1 - 5.4e-08 32.8 0.3 7.9e-08 32.2 0.3 1.2 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 ABA79086.1 - 0.00015 20.7 1.1 0.085 11.6 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_27 PF13514.6 ABA79086.1 - 0.00021 21.0 0.0 0.00043 19.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA79086.1 - 0.00028 21.5 0.0 0.00031 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 ABA79086.1 - 0.00043 19.8 0.2 0.0012 18.3 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA79086.1 - 0.00047 20.5 0.1 0.0015 18.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA79086.1 - 0.00057 19.6 0.0 0.0016 18.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 ABA79086.1 - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 ABA79086.1 - 0.011 15.6 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 ABA79086.1 - 0.017 15.6 0.1 0.044 14.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 ABA79086.1 - 0.025 14.3 0.0 0.045 13.4 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 ABA79086.1 - 0.053 13.4 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_19 PF13245.6 ABA79086.1 - 0.055 13.8 0.6 0.081 13.3 0.5 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA79086.1 - 0.062 13.4 0.2 0.16 12.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 ABA79086.1 - 0.074 12.4 0.6 2.1 7.7 0.2 2.2 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.7 ABA79086.1 - 0.096 11.6 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_16 PF13191.6 ABA79086.1 - 0.13 12.7 0.1 0.16 12.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.16 ABA79087.1 - 4.1e-37 127.8 33.2 5.2e-37 127.5 33.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF347 PF03988.12 ABA79087.1 - 0.012 15.8 0.6 0.012 15.8 0.6 5.6 4 2 1 5 5 5 0 Repeat of Unknown Function (DUF347) BPD_transp_2 PF02653.16 ABA79088.1 - 4.5e-32 111.3 56.6 6.3e-26 91.1 26.0 2.4 1 1 1 2 2 2 2 Branched-chain amino acid transport system / permease component ATP19 PF11022.8 ABA79088.1 - 0.23 11.9 5.7 1.8 9.0 0.0 3.5 3 0 0 3 3 3 0 ATP synthase subunit K DUF4381 PF14316.6 ABA79088.1 - 5.5 7.2 8.5 1.1 9.5 2.5 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) NTP_transf_3 PF12804.7 ABA79089.1 - 6.7e-31 107.8 10.8 8.7e-31 107.4 10.8 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hint_2 PF13403.6 ABA79090.1 - 9.4e-56 188.1 0.0 1.3e-55 187.6 0.0 1.2 1 0 0 1 1 1 1 Hint domain Sulfotransfer_3 PF13469.6 ABA79090.1 - 0.14 12.5 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Sulfotransferase family DsbB PF02600.16 ABA79091.1 - 1.8e-35 122.6 12.1 2.1e-35 122.3 12.1 1.0 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB UTRA PF07702.13 ABA79092.1 - 1.3e-22 80.2 0.0 2.7e-22 79.1 0.0 1.5 2 0 0 2 2 1 1 UTRA domain GntR PF00392.21 ABA79092.1 - 1.8e-17 62.8 0.6 3e-17 62.0 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 ABA79092.1 - 1.1e-07 31.7 0.5 3.4e-07 30.1 0.3 1.8 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 ABA79092.1 - 1.3e-05 25.0 0.4 3.5e-05 23.6 0.4 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 ABA79092.1 - 8.6e-05 22.5 0.9 8.6e-05 22.5 0.9 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 ABA79092.1 - 0.00011 22.0 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Crp PF00325.20 ABA79092.1 - 0.00016 21.3 1.2 0.00033 20.2 0.4 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family TrmB PF01978.19 ABA79092.1 - 0.00036 20.3 0.0 0.00069 19.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 ABA79092.1 - 0.0015 18.2 0.1 0.0022 17.6 0.1 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_29 PF13551.6 ABA79092.1 - 0.0016 18.4 1.4 0.0027 17.7 1.4 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 ABA79092.1 - 0.0024 17.8 0.2 0.006 16.5 0.1 1.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 ABA79092.1 - 0.0037 17.0 0.2 0.0071 16.1 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 ABA79092.1 - 0.0061 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 ABA79092.1 - 0.008 15.7 0.1 0.013 15.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 ABA79092.1 - 0.016 15.7 0.0 0.051 14.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_CodY PF08222.11 ABA79092.1 - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_23 PF13384.6 ABA79092.1 - 0.023 14.5 0.7 0.07 13.0 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 ABA79092.1 - 0.026 14.6 1.2 0.057 13.6 1.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 ABA79092.1 - 0.066 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 ABA79092.1 - 0.13 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.11 ABA79092.1 - 0.18 11.2 0.0 0.25 10.7 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TFIIE_alpha PF02002.17 ABA79092.1 - 0.23 11.4 0.0 0.38 10.6 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Amidohydro_1 PF01979.20 ABA79093.2 - 2.1e-26 93.1 0.0 2.5e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 ABA79094.1 - 7.6e-18 64.9 3.0 4.2e-17 62.5 3.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 ABA79094.1 - 6.4e-17 62.2 9.5 5e-14 52.6 4.6 2.1 1 1 0 2 2 2 2 Amidohydrolase family Lyase_aromatic PF00221.19 ABA79095.1 - 1.2e-175 584.6 14.4 1.5e-175 584.4 14.4 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Urocanase_C PF17392.2 ABA79096.2 - 1.9e-91 304.9 0.2 2.9e-91 304.2 0.2 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 ABA79096.2 - 1.2e-80 270.1 0.0 1.8e-80 269.6 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 ABA79096.2 - 2e-59 198.9 0.1 3.8e-59 197.9 0.0 1.5 2 0 0 2 2 2 1 Urocanase N-terminal domain DUF2637 PF10935.8 ABA79096.2 - 0.047 13.6 0.6 0.25 11.2 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2637) DUF1045 PF06299.12 ABA79097.1 - 6.9e-60 201.6 0.1 9e-60 201.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1045) 2_5_RNA_ligase2 PF13563.6 ABA79097.1 - 1.6e-05 24.9 0.0 2.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 ABA79097.1 - 0.003 17.7 0.2 0.076 13.2 0.0 2.7 2 1 1 3 3 3 1 LigT like Phosphoesterase BTP PF05232.12 ABA79098.1 - 2.4e-11 43.5 14.4 7.6e-11 41.9 5.4 2.1 2 0 0 2 2 2 2 Chlorhexidine efflux transporter SMC_ScpB PF04079.16 ABA79099.1 - 2.5e-48 163.7 0.0 3.1e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 ABA79099.1 - 0.0013 18.8 0.5 0.014 15.4 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain SMC_ScpA PF02616.14 ABA79100.1 - 1e-11 45.2 0.0 4.3e-09 36.6 0.2 2.1 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 ABA79100.1 - 0.021 14.1 0.0 0.053 12.8 0.0 1.6 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein AbfS_sensor PF18225.1 ABA79100.1 - 0.063 13.2 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Sensor histidine kinase (AbfS) sensor domain Glyco_hydro_3 PF00933.21 ABA79101.1 - 7.1e-43 147.2 0.0 8.8e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain SPOR PF05036.13 ABA79102.1 - 1.6e-13 50.8 0.1 3.9e-13 49.6 0.1 1.7 1 0 0 1 1 1 1 Sporulation related domain NBD_C PF17042.5 ABA79102.1 - 0.12 12.9 4.9 2.6 8.5 0.0 2.7 2 1 0 2 2 2 0 Nucleotide-binding C-terminal domain DALR_1 PF05746.15 ABA79103.2 - 3.5e-28 98.2 0.0 6.8e-28 97.2 0.0 1.5 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 ABA79103.2 - 6e-22 78.0 0.0 2.1e-21 76.3 0.0 2.0 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1d PF00750.19 ABA79103.2 - 7.4e-20 71.2 0.1 6.7e-19 68.0 0.1 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1 PF00133.22 ABA79103.2 - 2e-08 33.0 0.1 0.0027 16.0 0.0 3.0 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 ABA79103.2 - 4.9e-08 32.3 0.1 0.00027 20.0 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 ABA79103.2 - 3.1e-06 26.7 0.0 0.056 12.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 ABA79103.2 - 6.1e-06 25.2 0.1 0.0095 14.7 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (M) GTA_holin_3TM PF11351.8 ABA79104.1 - 3.2e-28 98.8 0.2 5.1e-28 98.1 0.2 1.3 1 0 0 1 1 1 1 Holin of 3TMs, for gene-transfer release Glyco_hydro_108 PF05838.12 ABA79105.1 - 1.6e-26 92.6 0.0 3e-25 88.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase 108 PG_binding_3 PF09374.10 ABA79105.1 - 1.1e-17 64.0 0.4 1.5e-16 60.4 0.3 2.1 2 0 0 2 2 2 1 Predicted Peptidoglycan domain PG_binding_1 PF01471.18 ABA79105.1 - 0.026 14.7 0.0 0.19 12.0 0.0 2.3 2 1 0 2 2 2 0 Putative peptidoglycan binding domain CcmE PF03100.15 ABA79106.2 - 9.8e-39 132.3 0.0 1.2e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 CcmE Semialdhyde_dh PF01118.24 ABA79107.1 - 3.9e-28 98.3 0.0 6.2e-28 97.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 ABA79107.1 - 9.8e-12 45.3 0.0 1.6e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 ABA79107.1 - 0.015 15.4 0.0 0.037 14.1 0.0 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus META PF03724.16 ABA79107.1 - 0.2 11.6 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 META domain Asp_Glu_race PF01177.22 ABA79108.1 - 8e-22 78.2 0.0 1e-21 77.9 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase DUF4691 PF15762.5 ABA79108.1 - 0.17 12.1 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4691) POR PF01558.18 ABA79109.1 - 1.6e-21 77.2 3.0 3e-21 76.3 3.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 ABA79109.1 - 5.6e-07 29.5 1.2 2.5e-06 27.3 1.3 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LysR_substrate PF03466.20 ABA79110.1 - 3.6e-35 121.3 0.4 4.9e-35 120.8 0.4 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA79110.1 - 2.5e-22 78.6 1.4 3.8e-22 78.0 0.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 ABA79110.1 - 0.016 15.1 0.8 0.13 12.2 0.1 2.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 ABA79110.1 - 0.021 14.8 0.1 0.064 13.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 ABA79110.1 - 0.04 13.5 0.1 0.22 11.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 ABA79110.1 - 0.041 13.8 0.1 0.08 12.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 ABA79110.1 - 0.057 13.2 0.1 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain DUF3965 PF13112.6 ABA79110.1 - 0.06 12.5 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3965) AIRS_C PF02769.22 ABA79111.2 - 9.4e-48 162.3 8.4 1.3e-30 106.6 0.3 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 ABA79111.2 - 5.2e-45 152.0 6.7 1.8e-23 83.0 0.9 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 ABA79111.2 - 8.1e-13 48.7 0.0 2.8e-12 47.0 0.0 1.9 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain Ub-Mut7C PF14451.6 ABA79111.2 - 0.089 12.6 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 Mut7-C ubiquitin BolA PF01722.18 ABA79112.1 - 9.5e-11 41.8 0.0 1.1e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Phage_FRD3 PF05798.11 ABA79112.1 - 0.016 15.5 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage FRD3 protein ATP_Ca_trans_C PF12424.8 ABA79112.1 - 0.18 12.3 0.0 0.23 12.0 0.0 1.2 1 0 0 1 1 1 0 Plasma membrane calcium transporter ATPase C terminal Glutaredoxin PF00462.24 ABA79113.1 - 2.7e-18 66.0 0.1 1.1e-17 64.0 0.0 1.8 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.6 ABA79113.1 - 0.14 12.6 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain ZapA PF05164.13 ABA79114.1 - 1.4e-19 70.3 0.6 2.2e-19 69.7 0.6 1.4 1 1 0 1 1 1 1 Cell division protein ZapA CALCOCO1 PF07888.11 ABA79115.2 - 0.0007 18.6 9.8 0.00083 18.3 9.8 1.2 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Atg14 PF10186.9 ABA79115.2 - 0.0013 17.9 2.0 0.0014 17.8 2.0 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 ABA79115.2 - 0.0014 19.2 3.8 0.0014 19.2 3.8 3.2 2 1 1 3 3 2 1 SlyX DUF3829 PF12889.7 ABA79115.2 - 0.0038 16.7 0.3 0.0047 16.4 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3829) FH2 PF02181.23 ABA79115.2 - 0.0042 16.3 2.9 0.0047 16.1 2.9 1.2 1 0 0 1 1 1 1 Formin Homology 2 Domain Baculo_PEP_C PF04513.12 ABA79115.2 - 0.006 16.6 1.5 0.011 15.7 0.9 1.8 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF16 PF01519.16 ABA79115.2 - 0.0081 16.6 3.2 0.015 15.7 3.2 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF16 FAM76 PF16046.5 ABA79115.2 - 0.0092 15.4 1.0 0.01 15.3 1.0 1.1 1 0 0 1 1 1 1 FAM76 protein Filament PF00038.21 ABA79115.2 - 0.01 15.5 7.0 0.016 14.8 7.0 1.3 1 0 0 1 1 1 0 Intermediate filament protein ADIP PF11559.8 ABA79115.2 - 0.014 15.4 5.3 0.019 15.1 5.3 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4201 PF13870.6 ABA79115.2 - 0.039 13.7 4.6 0.11 12.2 4.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DUF724 PF05266.14 ABA79115.2 - 0.043 13.6 2.4 0.079 12.8 2.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF1664 PF07889.12 ABA79115.2 - 0.049 13.7 2.9 0.15 12.1 2.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HIP1_clath_bdg PF16515.5 ABA79115.2 - 0.12 13.0 13.9 0.21 12.2 9.4 2.3 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Exonuc_VII_L PF02601.15 ABA79115.2 - 0.12 11.9 2.9 0.14 11.7 2.9 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit Occludin_ELL PF07303.13 ABA79115.2 - 0.15 12.8 1.7 0.29 11.9 1.7 1.4 1 0 0 1 1 1 0 Occludin homology domain V_ATPase_I PF01496.19 ABA79115.2 - 0.27 9.1 1.0 0.3 9.0 1.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.11 ABA79115.2 - 0.28 10.0 8.7 0.31 9.9 8.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein GAS PF13851.6 ABA79115.2 - 0.53 9.6 8.4 0.4 10.0 6.0 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sec3_C PF09763.9 ABA79115.2 - 0.54 8.6 6.3 0.045 12.2 1.8 1.4 2 0 0 2 2 2 0 Exocyst complex component Sec3 DUF1690 PF07956.11 ABA79115.2 - 0.68 10.4 8.9 0.57 10.6 7.2 1.7 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) Spc29 PF17082.5 ABA79115.2 - 0.8 9.5 3.6 3.1 7.6 3.6 1.8 1 1 0 1 1 1 0 Spindle Pole Component 29 MbeD_MobD PF04899.12 ABA79115.2 - 2.9 8.1 10.1 4.7 7.4 2.1 3.7 3 1 1 4 4 4 0 MbeD/MobD like YabA PF06156.13 ABA79115.2 - 2.9 8.6 8.0 10 6.9 5.8 2.3 1 1 1 2 2 2 0 Initiation control protein YabA Macoilin PF09726.9 ABA79115.2 - 4.3 5.8 10.1 5.7 5.4 10.1 1.1 1 0 0 1 1 1 0 Macoilin family ZapB PF06005.12 ABA79115.2 - 5 7.6 21.6 6.1 7.4 9.0 3.3 2 1 1 3 3 3 0 Cell division protein ZapB Spc24 PF08286.11 ABA79115.2 - 7 6.9 7.1 1.4 9.2 2.2 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 TMF_DNA_bd PF12329.8 ABA79115.2 - 8.8 6.4 12.4 2.4 8.2 7.7 2.6 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Transketolase_N PF00456.21 ABA79116.1 - 3.8e-114 381.1 0.5 3.8e-114 381.1 0.5 1.4 2 0 0 2 2 2 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 ABA79116.1 - 1e-49 168.6 0.2 3.7e-48 163.5 0.1 2.3 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 ABA79116.1 - 6e-11 42.3 0.0 1.6e-10 40.9 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 ABA79116.1 - 9.6e-11 41.7 1.4 1.2e-08 34.9 0.2 3.9 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 ABA79116.1 - 7.9e-07 28.5 0.0 3e-05 23.4 0.0 2.3 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 ABA79116.1 - 5.9e-05 22.2 0.0 0.00014 20.9 0.0 1.5 2 0 0 2 2 2 1 Dehydrogenase E1 component ROQ_II PF18386.1 ABA79116.1 - 0.052 13.4 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Roquin II domain DUF2934 PF11154.8 ABA79117.2 - 5.7e-09 35.5 6.6 1e-08 34.7 6.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2934) DUF808 PF05661.12 ABA79118.2 - 1.5e-115 385.5 12.0 1.7e-115 385.3 12.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF808) Gp_dh_C PF02800.20 ABA79119.1 - 1.2e-68 229.7 0.1 1.7e-68 229.2 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 ABA79119.1 - 1.9e-33 114.8 0.1 4e-33 113.8 0.1 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 ABA79119.1 - 0.0088 16.2 0.3 0.028 14.5 0.3 2.0 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 ABA79119.1 - 0.016 15.9 0.0 0.048 14.3 0.0 1.9 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ThiF PF00899.21 ABA79119.1 - 0.064 12.6 0.3 0.096 12.0 0.3 1.5 1 1 0 1 1 1 0 ThiF family F420_oxidored PF03807.17 ABA79119.1 - 0.089 13.4 0.3 0.41 11.3 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF1127 PF06568.11 ABA79120.1 - 0.0015 18.2 1.2 0.0031 17.2 1.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1127) CTP_transf_like PF01467.26 ABA79121.1 - 8.9e-17 61.6 0.0 1.1e-16 61.3 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 ABA79121.1 - 0.016 14.9 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain Acetyltransf_13 PF13880.6 ABA79121.1 - 0.074 13.0 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase CBS PF00571.28 ABA79122.1 - 3.2e-20 72.3 1.3 7.6e-09 35.9 0.1 2.2 2 0 0 2 2 2 2 CBS domain LysR_substrate PF03466.20 ABA79123.1 - 2.2e-33 115.4 1.6 3e-33 114.9 1.6 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA79123.1 - 1.2e-15 57.2 0.3 4.8e-15 55.3 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA79123.1 - 0.037 13.8 1.1 0.072 12.9 0.0 2.1 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.6 ABA79123.1 - 0.12 12.3 1.4 1.2 9.1 0.2 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA79123.1 - 0.15 12.0 2.8 0.79 9.6 0.0 3.2 4 0 0 4 4 4 0 MarR family Aldedh PF00171.22 ABA79124.1 - 6.1e-139 463.5 0.0 7.6e-139 463.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 ABA79124.1 - 0.01 15.0 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) cNMP_binding PF00027.29 ABA79125.1 - 1.7e-14 53.6 0.0 3.1e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 ABA79125.1 - 2.4e-14 53.1 2.0 3.9e-14 52.4 2.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 ABA79125.1 - 7.6e-05 22.5 2.0 0.00023 21.0 2.0 1.9 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 ABA79125.1 - 0.0034 17.7 0.0 0.0076 16.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 ABA79125.1 - 0.0037 17.2 0.0 0.007 16.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 ABA79125.1 - 0.0042 16.6 0.0 0.0081 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Crp PF00325.20 ABA79125.1 - 0.0093 15.6 0.2 0.021 14.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_IclR PF09339.10 ABA79125.1 - 0.035 13.9 1.2 0.066 13.0 0.4 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.6 ABA79125.1 - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2892 PF11127.8 ABA79126.2 - 1.5e-20 73.0 1.2 1.8e-20 72.7 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF2933 PF11666.8 ABA79126.2 - 0.1 12.7 2.0 0.15 12.2 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2933) UvrA_DNA-bind PF17755.1 ABA79127.1 - 3e-40 137.0 0.0 3.7e-38 130.2 0.0 3.2 3 0 0 3 3 3 1 UvrA DNA-binding domain UvrA_inter PF17760.1 ABA79127.1 - 1.6e-34 118.3 0.0 4.3e-34 116.9 0.0 1.7 1 0 0 1 1 1 1 UvrA interaction domain ABC_tran PF00005.27 ABA79127.1 - 1.1e-18 68.0 0.2 0.00033 21.2 0.0 4.4 4 0 0 4 4 4 4 ABC transporter SMC_N PF02463.19 ABA79127.1 - 9.2e-10 38.3 0.0 0.013 15.0 0.0 4.0 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 ABA79127.1 - 2.2e-06 27.5 3.7 0.0022 17.9 0.3 2.6 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 ABA79127.1 - 2.5e-06 27.1 0.2 0.06 13.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA79127.1 - 3.6e-05 24.2 0.0 0.077 13.4 0.0 3.3 4 0 0 4 4 3 1 AAA ATPase domain DnaJ_CXXCXGXG PF00684.19 ABA79127.1 - 9.2e-05 22.7 1.2 0.013 15.9 0.5 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_25 PF13481.6 ABA79127.1 - 0.00015 21.4 0.0 0.79 9.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 ABA79127.1 - 0.00036 20.5 0.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase ATPase PF06745.13 ABA79127.1 - 0.0015 17.9 0.1 1.2 8.5 0.1 2.6 2 0 0 2 2 2 2 KaiC AAA_21 PF13304.6 ABA79127.1 - 0.0026 17.6 8.0 0.015 15.1 0.0 3.4 4 0 0 4 4 3 1 AAA domain, putative AbiEii toxin, Type IV TA system APS_kinase PF01583.20 ABA79127.1 - 0.0043 17.0 0.9 1.3 8.9 0.0 3.1 3 0 0 3 3 3 1 Adenylylsulphate kinase AAA_22 PF13401.6 ABA79127.1 - 0.0045 17.3 0.9 4.6 7.5 0.0 3.4 4 0 0 4 4 4 1 AAA domain AAA_23 PF13476.6 ABA79127.1 - 0.0088 16.6 1.8 1.1 9.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 ABA79127.1 - 0.013 15.7 0.1 3.7 7.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 ABA79127.1 - 0.026 13.8 0.2 3.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 ABA79127.1 - 0.046 13.8 0.1 7 6.7 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 ABA79127.1 - 0.061 13.9 4.9 6 7.4 0.0 3.1 3 0 0 3 3 2 0 AAA domain IstB_IS21 PF01695.17 ABA79127.1 - 0.062 13.0 0.4 22 4.7 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein TrkA_N PF02254.18 ABA79127.1 - 0.067 13.5 0.4 17 5.7 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain AAA_15 PF13175.6 ABA79127.1 - 0.083 12.6 0.0 5.3 6.7 0.0 2.9 3 0 0 3 3 3 0 AAA ATPase domain NACHT PF05729.12 ABA79127.1 - 0.17 11.8 0.0 20 5.1 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.18 ABA79127.1 - 0.19 11.5 0.1 7.8 6.2 0.0 2.9 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Anti-TRAP PF15777.5 ABA79127.1 - 1.4 9.0 4.6 6.3 6.8 0.4 2.9 3 0 0 3 3 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein MFS_1 PF07690.16 ABA79128.2 - 1.5e-19 70.1 64.3 3.9e-18 65.5 33.4 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA79128.2 - 0.0018 17.2 12.8 0.0018 17.2 12.8 2.5 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 ABA79128.2 - 5.6 5.7 10.2 10 4.8 10.2 1.4 1 0 0 1 1 1 0 MFS_1 like family PetL PF05115.14 ABA79128.2 - 7.1 6.7 13.9 7.4 6.6 0.0 4.6 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit VI (PetL) Pyr_redox_2 PF07992.14 ABA79129.1 - 5.4e-63 213.0 7.3 7e-63 212.6 7.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 ABA79129.1 - 3e-35 120.8 0.7 6.9e-35 119.6 0.7 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 ABA79129.1 - 3.1e-19 69.3 9.9 3.5e-17 62.7 1.0 3.9 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA79129.1 - 2.4e-17 63.2 5.3 1.2e-11 44.5 0.2 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA79129.1 - 1.6e-07 30.8 15.6 6.4e-06 25.5 0.7 4.7 3 1 2 5 5 5 2 FAD binding domain HI0933_like PF03486.14 ABA79129.1 - 7.9e-06 24.8 10.9 0.00089 18.1 0.8 3.6 3 1 1 4 4 4 3 HI0933-like protein GIDA PF01134.22 ABA79129.1 - 1.3e-05 24.5 8.7 3.3e-05 23.1 4.1 3.1 3 1 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 ABA79129.1 - 3.1e-05 23.5 1.7 7.2e-05 22.3 1.7 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA79129.1 - 7.8e-05 22.8 3.1 0.0079 16.4 0.4 3.0 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 ABA79129.1 - 0.00016 20.9 0.7 0.017 14.3 0.0 2.8 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 ABA79129.1 - 0.00037 20.2 17.0 0.056 13.0 0.4 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase Thi4 PF01946.17 ABA79129.1 - 0.0068 15.7 1.4 0.012 14.8 0.3 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 ABA79129.1 - 0.0095 15.2 6.6 0.42 9.8 1.0 3.0 2 2 1 3 3 3 2 FAD binding domain AlaDh_PNT_C PF01262.21 ABA79129.1 - 0.011 15.1 3.9 0.058 12.7 0.6 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 ABA79129.1 - 0.022 14.1 0.3 0.1 12.0 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 ABA79129.1 - 0.055 13.3 0.6 0.055 13.3 0.6 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 ABA79129.1 - 0.07 12.4 1.6 0.13 11.5 0.1 2.1 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 ABA79129.1 - 0.11 11.3 4.2 10 4.8 0.3 3.2 3 0 0 3 3 3 0 Tryptophan halogenase Lycopene_cycl PF05834.12 ABA79129.1 - 3.9 6.4 7.0 0.75 8.8 2.2 2.3 2 2 1 3 3 3 0 Lycopene cyclase protein DUF924 PF06041.11 ABA79130.1 - 2e-57 194.2 0.0 2.3e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF924) MFS_1 PF07690.16 ABA79131.1 - 3e-26 92.2 55.0 1.1e-16 60.7 28.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 ABA79131.1 - 8.5e-08 31.9 23.7 8.5e-08 31.9 23.7 2.7 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 ABA79131.1 - 1.1e-07 31.1 27.9 8.3e-07 28.2 10.0 3.3 1 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 ABA79131.1 - 0.24 10.2 19.0 0.3 9.9 5.8 3.2 2 1 1 3 3 3 0 MFS_1 like family CCB1 PF12046.8 ABA79131.1 - 0.89 8.9 3.2 12 5.2 0.2 2.5 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B Queuosine_synth PF02547.15 ABA79132.1 - 6.3e-127 423.2 0.0 7.3e-127 423.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein AsmA_2 PF13502.6 ABA79133.1 - 3.9e-11 42.9 1.1 1.4e-07 31.3 0.1 4.7 3 2 0 3 3 3 3 AsmA-like C-terminal region DUF3971 PF13116.6 ABA79133.1 - 0.00022 20.9 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function AhpC-TSA PF00578.21 ABA79134.1 - 2.3e-34 118.0 0.0 2.7e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 ABA79134.1 - 2.1e-21 76.2 0.0 2.4e-21 76.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 ABA79134.1 - 4.2e-05 23.2 0.0 5.2e-05 22.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 ABA79134.1 - 0.0017 18.4 0.0 0.0027 17.8 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Peptidase_M23 PF01551.22 ABA79135.1 - 1.5e-34 118.0 1.3 2.7e-34 117.3 1.3 1.4 1 0 0 1 1 1 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.6 ABA79135.1 - 0.15 11.9 0.1 0.45 10.4 0.1 1.8 1 0 0 1 1 1 0 Biotin-lipoyl like DUF1635 PF07795.11 ABA79135.1 - 0.17 11.7 6.6 0.062 13.2 3.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1635) ATG16 PF08614.11 ABA79135.1 - 1.6 8.9 23.5 1.2 9.3 9.8 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) YabA PF06156.13 ABA79135.1 - 8.8 7.0 7.0 28 5.4 1.0 2.3 1 1 1 2 2 2 0 Initiation control protein YabA Bactofilin PF04519.13 ABA79136.1 - 9.2e-23 80.4 6.7 1.1e-22 80.1 6.7 1.1 1 0 0 1 1 1 1 Polymer-forming cytoskeletal DUF3672 PF12421.8 ABA79136.1 - 0.027 14.3 0.9 0.054 13.4 0.6 1.6 1 1 0 1 1 1 0 Fibronectin type III protein DUF2189 PF09955.9 ABA79137.1 - 1.4e-34 119.0 9.4 1.4e-34 119.0 9.4 2.5 3 0 0 3 3 3 1 Predicted integral membrane protein (DUF2189) DUF2892 PF11127.8 ABA79137.1 - 0.97 9.5 0.0 0.97 9.5 0.0 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF2892) PCRF PF03462.18 ABA79138.1 - 1.2e-54 185.1 1.1 2e-54 184.4 0.2 1.7 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 ABA79138.1 - 3.5e-37 126.9 0.4 3.5e-37 126.9 0.4 2.0 2 1 1 3 3 3 1 RF-1 domain MIR PF02815.19 ABA79138.1 - 0.081 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 MIR domain Transgly PF00912.22 ABA79139.1 - 3.2e-60 202.6 0.2 6.5e-60 201.6 0.2 1.5 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 ABA79139.1 - 3.7e-37 128.2 0.2 2.7e-36 125.4 0.2 2.3 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain PCB_OB PF17092.5 ABA79139.1 - 1.4e-23 83.8 1.3 3.1e-23 82.7 1.3 1.6 1 0 0 1 1 1 1 Penicillin-binding protein OB-like domain Amidase_3 PF01520.18 ABA79140.1 - 8.8e-40 136.7 0.0 1.2e-39 136.2 0.0 1.2 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase AMIN PF11741.8 ABA79140.1 - 2.7e-08 33.8 0.0 1.9e-07 31.1 0.0 2.2 2 0 0 2 2 2 1 AMIN domain Aminotran_1_2 PF00155.21 ABA79141.1 - 9.9e-51 173.0 0.0 1.2e-50 172.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 ABA79141.1 - 0.014 14.3 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 Allinase Thioredoxin_4 PF13462.6 ABA79142.1 - 7.1e-23 81.6 0.0 1.7e-22 80.4 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin DSBA PF01323.20 ABA79142.1 - 8.5e-21 74.6 1.6 3.8e-19 69.2 0.1 2.7 2 1 0 2 2 2 1 DSBA-like thioredoxin domain ScsC_N PF18312.1 ABA79142.1 - 3.8e-13 49.0 2.5 1.1e-12 47.5 2.5 1.8 1 0 0 1 1 1 1 Copper resistance protein ScsC N-terminal domain Thioredoxin_2 PF13098.6 ABA79142.1 - 3.1e-08 34.0 0.0 1.5e-07 31.9 0.0 2.0 2 1 0 2 2 2 1 Thioredoxin-like domain TraB PF01963.17 ABA79142.1 - 0.0059 16.5 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 TraB family Thioredoxin PF00085.20 ABA79142.1 - 0.0063 16.5 0.0 0.8 9.7 0.0 2.5 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_5 PF13743.6 ABA79142.1 - 0.027 14.1 0.0 0.059 13.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin MHB PF16525.5 ABA79142.1 - 0.055 13.7 0.2 0.1 12.9 0.2 1.5 1 0 0 1 1 1 0 Haemophore, haem-binding Thioredoxin_3 PF13192.6 ABA79142.1 - 0.065 13.3 0.0 3.9 7.6 0.0 2.6 2 0 0 2 2 2 0 Thioredoxin domain GcpE PF04551.14 ABA79143.1 - 5e-128 427.1 0.5 5.8e-128 426.9 0.5 1.0 1 0 0 1 1 1 1 GcpE protein MR_MLE_C PF13378.6 ABA79143.1 - 0.029 13.9 0.9 0.077 12.6 0.5 1.8 2 0 0 2 2 2 0 Enolase C-terminal domain-like DeoC PF01791.9 ABA79143.1 - 0.031 13.9 2.2 0.14 11.7 0.4 2.5 2 1 1 3 3 3 0 DeoC/LacD family aldolase DUF4115 PF13464.6 ABA79144.2 - 8.8e-18 64.3 0.0 2e-17 63.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4115) HTH_25 PF13413.6 ABA79144.2 - 1.3e-16 60.2 0.1 2.2e-16 59.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 ABA79144.2 - 0.00042 20.3 0.0 0.00079 19.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 ABA79144.2 - 0.0014 18.9 0.0 0.0039 17.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Aminotran_1_2 PF00155.21 ABA79145.1 - 6.5e-68 229.5 0.0 7.5e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 ABA79145.1 - 0.0014 17.3 0.0 0.0021 16.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 ABA79145.1 - 0.017 14.1 0.0 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class-V DUF4189 PF13827.6 ABA79146.1 - 7.6e-07 29.6 4.1 0.0006 20.3 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4189) Peptidase_M20 PF01546.28 ABA79147.2 - 3.7e-36 124.8 0.0 4.5e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA79147.2 - 1.5e-25 89.2 0.0 3.5e-25 88.1 0.0 1.6 2 0 0 2 2 2 1 Peptidase dimerisation domain Acetyltransf_1 PF00583.25 ABA79148.1 - 7.8e-12 45.5 0.0 9.5e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 ABA79148.1 - 0.0001 22.2 0.0 0.00023 21.1 0.0 1.6 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 ABA79148.1 - 0.00018 21.9 0.0 0.00026 21.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA79148.1 - 0.0051 16.8 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Pirin PF02678.16 ABA79149.1 - 2.1e-24 85.6 0.6 3.4e-24 84.9 0.2 1.6 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.13 ABA79149.1 - 1.1e-22 80.3 0.0 2.4e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Pirin C-terminal cupin domain TetR_C_19 PF17924.1 ABA79150.2 - 0.02 15.5 0.0 0.037 14.6 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Phage-tail_3 PF13550.6 ABA79151.2 - 8.4e-34 116.8 0.0 2.1e-33 115.5 0.0 1.6 1 0 0 1 1 1 1 Putative phage tail protein CBM_4_9 PF02018.17 ABA79151.2 - 0.056 13.7 6.3 18 5.6 0.0 3.6 3 0 0 3 3 3 0 Carbohydrate binding domain THB PF18362.1 ABA79152.2 - 0.058 13.0 0.7 0.34 10.5 0.3 2.1 2 0 0 2 2 2 0 Tri-helix bundle domain DUF4031 PF13223.6 ABA79155.2 - 0.051 13.8 0.1 0.19 11.9 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) HNH_3 PF13392.6 ABA79156.1 - 2.3e-18 65.7 0.1 3.5e-18 65.1 0.1 1.3 1 0 0 1 1 1 1 HNH endonuclease FCP1_C PF09309.10 ABA79156.1 - 0.067 13.1 0.0 0.16 11.8 0.0 1.5 2 0 0 2 2 2 0 FCP1, C-terminal DUF3168 PF11367.8 ABA79157.2 - 0.0012 19.0 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) HK97-gp10_like PF04883.12 ABA79158.2 - 3.7e-13 50.2 3.7 9.6e-13 48.9 0.1 2.1 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component Phage_H_T_join PF05521.11 ABA79159.1 - 7.9e-20 71.2 0.7 8.8e-20 71.0 0.7 1.0 1 0 0 1 1 1 1 Phage head-tail joining protein Phage_connect_1 PF05135.13 ABA79160.1 - 4.4e-15 56.0 0.0 5.1e-15 55.8 0.0 1.0 1 0 0 1 1 1 1 Phage gp6-like head-tail connector protein Phage_capsid PF05065.13 ABA79161.1 - 1.3e-28 100.1 2.3 1.3e-28 100.1 2.3 1.5 2 0 0 2 2 2 1 Phage capsid family Peptidase_S78 PF04586.17 ABA79162.1 - 2.2e-36 125.5 0.1 2.7e-36 125.2 0.1 1.0 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_portal PF04860.12 ABA79163.1 - 4.1e-69 233.2 0.0 4.8e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Phage portal protein Terminase_1 PF03354.15 ABA79164.2 - 4.6e-57 193.6 0.0 6e-57 193.2 0.0 1.1 1 0 0 1 1 1 1 Phage Terminase Rbsn PF11464.8 ABA79165.1 - 0.093 12.5 0.1 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 Rabenosyn Rab binding domain DUF5315 PF17242.2 ABA79166.1 - 0.00038 20.2 2.4 0.0018 18.1 0.2 2.2 2 0 0 2 2 2 1 Disordered region of unknown function (DUF5315) COG2 PF06148.11 ABA79166.1 - 0.069 13.2 2.2 0.11 12.6 1.2 1.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Ribosomal_S21 PF01165.20 ABA79166.1 - 0.17 11.6 0.0 0.17 11.6 0.0 2.4 4 0 0 4 4 4 0 Ribosomal protein S21 VPS11_C PF12451.8 ABA79166.1 - 0.18 12.0 3.4 13 6.1 0.1 2.7 3 0 0 3 3 3 0 Vacuolar protein sorting protein 11 C terminal DUF4349 PF14257.6 ABA79166.1 - 0.53 9.7 3.6 0.81 9.1 3.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) HNH_3 PF13392.6 ABA79167.1 - 1.2e-17 63.4 1.4 2.1e-17 62.6 1.4 1.5 1 0 0 1 1 1 1 HNH endonuclease AP2 PF00847.20 ABA79167.1 - 0.0039 17.4 1.1 0.014 15.6 0.2 2.0 2 0 0 2 2 2 1 AP2 domain HNH PF01844.23 ABA79168.1 - 8.1e-10 38.7 1.4 1.3e-09 38.1 1.4 1.3 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 ABA79168.1 - 0.0014 18.5 0.3 0.0014 18.5 0.3 1.6 2 0 0 2 2 2 1 HNH endonuclease HNH_2 PF13391.6 ABA79168.1 - 0.092 12.9 0.4 0.16 12.1 0.3 1.7 1 1 0 1 1 1 0 HNH endonuclease DDE_Tnp_IS66_C PF13817.6 ABA79169.1 - 3.7e-09 36.6 0.0 9.4e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 IS66 C-terminal element DUF2971 PF11185.8 ABA79170.1 - 6.2e-11 43.3 0.1 1.9e-10 41.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2971) Histone_HNS PF00816.21 ABA79171.1 - 4.1e-25 88.4 1.0 4.8e-25 88.2 1.0 1.1 1 0 0 1 1 1 1 H-NS histone family Resolvase PF00239.21 ABA79172.2 - 2.9e-18 66.4 1.0 5.8e-18 65.4 0.3 1.8 2 0 0 2 2 2 1 Resolvase, N terminal domain Recombinase PF07508.13 ABA79172.2 - 3.5e-15 56.3 0.0 9.3e-15 54.9 0.0 1.8 1 0 0 1 1 1 1 Recombinase Zn_ribbon_recom PF13408.6 ABA79172.2 - 1.5e-09 38.2 0.5 3.2e-09 37.2 0.5 1.6 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain zf-NADH-PPase PF09297.11 ABA79172.2 - 0.083 12.6 0.9 0.19 11.4 0.9 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain U3_assoc_6 PF08640.11 ABA79172.2 - 0.17 12.0 1.4 0.4 10.8 1.4 1.6 1 0 0 1 1 1 0 U3 small nucleolar RNA-associated protein 6 GMP_synt_C PF00958.22 ABA79174.1 - 2.1e-41 139.9 0.0 3.8e-41 139.0 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.28 ABA79174.1 - 4.9e-33 114.5 0.0 6.9e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.17 ABA79174.1 - 1.8e-10 40.3 0.0 3.1e-06 26.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 ABA79174.1 - 1.8e-07 31.1 1.3 7.6e-07 29.1 1.3 2.0 1 1 0 1 1 1 1 Peptidase C26 tRNA_Me_trans PF03054.16 ABA79174.1 - 1.2e-05 24.3 0.2 3.4e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 ABA79174.1 - 0.0086 15.8 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 ABA79174.1 - 0.012 15.1 0.0 0.77 9.2 0.0 2.3 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 ABA79174.1 - 0.028 14.0 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 ABA79174.1 - 0.052 13.2 0.1 0.076 12.7 0.1 1.2 1 0 0 1 1 1 0 Asparagine synthase EamA PF00892.20 ABA79175.1 - 9.6e-26 90.6 34.9 5.3e-15 55.8 12.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 ABA79175.1 - 0.0027 17.1 3.8 0.0068 15.8 3.8 1.7 1 1 0 1 1 1 1 Triose-phosphate Transporter family Toluene_X PF03349.16 ABA79176.1 - 1.1e-10 40.7 3.4 2.1e-10 39.8 3.4 1.4 1 1 0 1 1 1 1 Outer membrane protein transport protein (OMPP1/FadL/TodX) EamA PF00892.20 ABA79177.1 - 1.8e-33 115.6 36.1 3.2e-20 72.7 13.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 ABA79177.1 - 0.11 11.9 1.7 0.24 10.9 1.7 1.6 1 1 0 1 1 1 0 Solute carrier family 35 CRT-like PF08627.10 ABA79177.1 - 0.6 9.0 3.2 0.34 9.8 0.1 1.8 2 0 0 2 2 2 0 CRT-like, chloroquine-resistance transporter-like AAA_16 PF13191.6 ABA79178.1 - 0.15 12.4 0.2 0.57 10.6 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain RuvB_N PF05496.12 ABA79178.1 - 0.15 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain HTS PF04204.16 ABA79179.1 - 8.8e-131 435.3 0.0 9.9e-131 435.1 0.0 1.0 1 0 0 1 1 1 1 Homoserine O-succinyltransferase Abhydrolase_6 PF12697.7 ABA79180.2 - 2.7e-21 77.2 8.8 4.4e-21 76.5 8.8 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA79180.2 - 1.1e-16 61.3 0.2 5.9e-14 52.3 0.2 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA79180.2 - 7.5e-14 51.6 0.1 4.4e-08 32.7 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 ABA79180.2 - 5.3e-05 23.1 0.6 0.0097 15.7 0.0 2.7 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase Esterase PF00756.20 ABA79180.2 - 0.08 12.6 0.2 0.11 12.1 0.2 1.2 1 0 0 1 1 1 0 Putative esterase PPK2 PF03976.14 ABA79181.1 - 1.2e-95 319.4 0.6 1.4e-95 319.1 0.6 1.1 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) TetR_N PF00440.23 ABA79182.1 - 2.4e-12 46.5 1.4 1e-11 44.4 0.3 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family TetR_C_33 PF13305.6 ABA79182.1 - 4.1e-12 46.7 3.0 4.1e-12 46.7 3.0 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_20 PF12840.7 ABA79182.1 - 0.016 15.3 0.2 0.073 13.1 0.0 2.2 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_31 PF13560.6 ABA79182.1 - 0.064 13.6 1.0 0.52 10.7 0.1 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain TetR_C_15 PF17918.1 ABA79182.1 - 0.094 13.5 2.0 0.13 13.0 0.4 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ABC_tran PF00005.27 ABA79183.1 - 1e-32 113.5 0.0 1.6e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA79183.1 - 2.5e-09 37.1 0.3 6.5e-09 35.8 0.1 1.9 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 ABA79183.1 - 8.6e-09 35.6 0.2 0.0006 19.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79183.1 - 2.8e-05 23.7 0.1 0.0026 17.2 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 ABA79183.1 - 5.3e-05 23.7 0.3 0.0011 19.5 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) OB_MalK PF17912.1 ABA79183.1 - 0.00034 21.4 0.1 0.00095 20.0 0.1 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_22 PF13401.6 ABA79183.1 - 0.00054 20.2 1.0 0.0051 17.1 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA79183.1 - 0.00065 20.1 0.2 0.0014 19.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 ABA79183.1 - 0.0049 16.8 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 ABA79183.1 - 0.014 16.0 0.2 2 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 ABA79183.1 - 0.02 14.4 0.2 0.3 10.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 ABA79183.1 - 0.025 14.8 0.2 0.38 11.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA79183.1 - 0.05 13.5 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 ABA79183.1 - 0.057 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 ABA79183.1 - 0.07 13.1 0.1 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 ABA79183.1 - 0.15 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 ABA79183.1 - 0.19 12.2 0.3 0.4 11.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 ABA79183.1 - 0.19 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea BPD_transp_1 PF00528.22 ABA79184.1 - 7.8e-20 71.4 18.4 7.8e-20 71.4 18.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA79185.1 - 3.9e-13 49.5 23.1 4.6e-13 49.3 20.5 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PsbM PF05151.12 ABA79185.1 - 0.02 14.7 2.8 0.095 12.5 2.8 2.2 1 0 0 1 1 1 0 Photosystem II reaction centre M protein (PsbM) Marek_SORF3 PF07153.11 ABA79185.1 - 0.026 13.9 0.1 0.053 12.9 0.1 1.4 1 0 0 1 1 1 0 Marek's disease-like virus SORF3 protein Aminotran_1_2 PF00155.21 ABA79186.1 - 7e-19 68.2 0.0 9.3e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 ABA79186.1 - 2.1e-14 52.9 1.1 1.1e-13 50.6 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 ABA79186.1 - 0.044 13.7 0.0 0.22 11.5 0.1 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain CoA_binding_2 PF13380.6 ABA79186.1 - 0.048 14.2 0.3 0.12 12.9 0.3 1.7 1 0 0 1 1 1 0 CoA binding domain MmcB-like PF06319.12 ABA79186.1 - 0.13 12.0 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 DNA repair protein MmcB-like MarR_2 PF12802.7 ABA79186.1 - 0.21 11.5 3.0 0.29 11.0 0.2 2.7 3 0 0 3 3 3 0 MarR family DUF1127 PF06568.11 ABA79187.1 - 3.7e-10 39.3 3.6 5.6e-10 38.8 3.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1127) DUF1003 PF06210.11 ABA79188.1 - 1.2e-37 128.1 0.1 2.1e-37 127.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1003) DUF347 PF03988.12 ABA79188.1 - 0.056 13.6 2.0 0.12 12.6 2.0 1.5 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) RNF220 PF15926.5 ABA79188.1 - 0.096 12.3 0.9 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 E3 ubiquitin-protein ligase RNF220 HHH_2 PF12826.7 ABA79188.1 - 0.92 9.6 2.8 6.8 6.9 0.2 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif Ribosomal_S9 PF00380.19 ABA79189.1 - 2.4e-48 163.7 0.5 3e-48 163.3 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 DUF2378 PF09536.10 ABA79189.1 - 0.046 13.6 0.1 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2378) Ribosomal_L13 PF00572.18 ABA79190.1 - 6.2e-53 178.3 0.1 7.2e-53 178.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 SseB PF07179.12 ABA79191.1 - 9.7e-07 29.1 0.0 1.8e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 SseB protein N-terminal domain dTDP_sugar_isom PF00908.17 ABA79192.1 - 7.9e-63 211.1 0.0 8.7e-63 211.0 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase SAF PF08666.12 ABA79193.1 - 8.2e-07 29.6 0.0 3.5e-06 27.6 0.0 2.2 1 0 0 1 1 1 1 SAF domain GFO_IDH_MocA PF01408.22 ABA79193.1 - 9.1e-06 26.5 0.5 1.8e-05 25.5 0.5 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 ABA79193.1 - 1.9e-05 25.3 0.2 9.9e-05 23.0 0.4 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 ABA79193.1 - 3.5e-05 23.8 1.6 5.6e-05 23.1 1.6 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 ABA79193.1 - 0.00045 20.7 0.8 0.0011 19.6 0.8 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 ABA79193.1 - 0.00073 19.8 0.6 0.002 18.4 0.6 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DAO PF01266.24 ABA79193.1 - 0.0091 15.6 1.3 0.8 9.2 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_2 PF03446.15 ABA79193.1 - 0.03 14.5 0.3 0.057 13.6 0.3 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 ABA79193.1 - 0.052 13.6 0.2 0.12 12.4 0.2 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 ABA79194.1 - 2.4e-34 118.9 0.0 3e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA79194.1 - 2.9e-17 63.1 0.0 4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 ABA79194.1 - 6.9e-10 38.5 0.0 8.4e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 ABA79194.1 - 2.4e-08 33.3 0.0 3.6e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 ABA79194.1 - 0.0011 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 ABA79196.1 - 2.9e-42 144.3 0.0 5e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA79196.1 - 9.9e-29 100.5 1.0 1.8e-28 99.7 1.0 1.4 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA79196.1 - 5.4e-11 42.7 0.6 9.5e-11 41.9 0.6 1.4 1 0 0 1 1 1 1 KR domain Glyco_transf_4 PF13439.6 ABA79196.1 - 0.00021 21.4 1.2 0.00038 20.5 1.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase PF01370.21 ABA79196.1 - 0.00086 18.8 0.3 0.0017 17.9 0.3 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family LpxK PF02606.14 ABA79196.1 - 0.0057 15.8 0.4 0.0091 15.1 0.4 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase NmrA PF05368.13 ABA79196.1 - 0.024 14.2 0.6 0.044 13.3 0.6 1.4 1 0 0 1 1 1 0 NmrA-like family AcetylCoA_hyd_C PF13336.6 ABA79197.1 - 2.5e-41 141.2 0.0 4.3e-41 140.4 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 ABA79197.1 - 5.3e-29 101.6 0.0 1e-28 100.7 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.12 ABA79197.1 - 1.1e-06 27.9 0.6 3.8e-06 26.1 0.4 1.9 3 0 0 3 3 3 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.23 ABA79197.1 - 9.6e-06 25.1 0.7 0.00028 20.4 0.0 2.8 2 1 1 3 3 3 1 Coenzyme A transferase LUD_dom PF02589.15 ABA79197.1 - 8.3e-05 22.4 0.2 0.00013 21.7 0.2 1.3 1 0 0 1 1 1 1 LUD domain EAL PF00563.20 ABA79198.1 - 1.5e-68 230.9 0.0 5e-68 229.2 0.0 1.8 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 ABA79198.1 - 1.4e-46 158.2 0.0 2.6e-46 157.3 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 ABA79198.1 - 9.4e-34 115.6 1.0 2.8e-17 62.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 ABA79198.1 - 1.3e-25 89.7 10.0 7.4e-09 35.8 0.2 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 ABA79198.1 - 2.2e-19 69.6 0.0 1.4e-07 31.7 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 ABA79198.1 - 7e-18 64.7 0.1 1.2e-08 34.9 0.0 3.8 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 ABA79198.1 - 4.7e-10 39.3 0.7 0.0007 19.6 0.0 3.3 3 0 0 3 3 3 2 PAS domain Sigma70_r4_2 PF08281.12 ABA79198.1 - 0.092 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r2 PF04542.14 ABA79201.1 - 2.3e-14 52.9 0.4 6e-14 51.6 0.4 1.7 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 ABA79201.1 - 2.6e-14 52.4 0.5 6.2e-14 51.2 0.5 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 ABA79201.1 - 2.6e-07 30.6 1.8 4.6e-06 26.6 0.1 3.1 3 1 1 4 4 4 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 ABA79201.1 - 1.3e-05 24.7 0.6 0.00013 21.6 0.3 2.6 3 0 0 3 3 3 1 Sigma-70, region 4 KORA PF16509.5 ABA79201.1 - 0.084 13.2 0.2 0.31 11.3 0.1 1.9 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor ATPase PF06745.13 ABA79202.1 - 0.067 12.5 0.0 0.095 12.0 0.0 1.1 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.6 ABA79202.1 - 0.092 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain CoA_binding_2 PF13380.6 ABA79202.1 - 0.13 12.7 0.0 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain DUF2075 PF09848.9 ABA79202.1 - 0.17 11.1 0.0 0.23 10.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) FHIPEP PF00771.20 ABA79203.1 - 7.9e-231 768.1 3.9 9.1e-231 767.9 3.9 1.0 1 0 0 1 1 1 1 FHIPEP family LPP20 PF02169.16 ABA79204.2 - 2.9e-07 30.7 0.0 3.9e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 LPP20 lipoprotein FlgT_N PF16548.5 ABA79205.1 - 1.4e-08 35.2 0.7 3e-08 34.1 0.7 1.5 1 0 0 1 1 1 1 Flagellar assembly protein T, N-terminal domain ChapFlgA PF13144.6 ABA79206.1 - 1.9e-20 73.1 0.0 5.1e-20 71.7 0.0 1.6 1 1 0 1 1 1 1 Chaperone for flagella basal body P-ring formation SAF PF08666.12 ABA79206.1 - 0.00021 21.8 0.3 0.0079 16.8 0.3 2.6 1 1 0 1 1 1 1 SAF domain FlgM PF04316.13 ABA79207.1 - 1.8e-08 34.6 0.0 3.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Anti-sigma-28 factor, FlgM DUF2802 PF10975.8 ABA79208.1 - 4e-06 26.9 3.7 1.6e-05 24.9 3.7 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2802) Sugarporin_N PF11471.8 ABA79208.1 - 0.75 9.8 5.2 5.4 7.1 5.2 2.3 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Sel1 PF08238.12 ABA79209.1 - 2.5e-10 40.7 7.3 3.2e-06 27.6 1.0 2.9 2 0 0 2 2 2 2 Sel1 repeat TPR_6 PF13174.6 ABA79209.1 - 0.52 11.1 10.0 13 6.7 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat PSK_trans_fac PF07704.11 ABA79213.1 - 5.9 7.7 10.2 1.9 9.3 6.2 2.0 1 1 1 2 2 2 0 Rv0623-like transcription factor FliS PF02561.14 ABA79214.1 - 3.4e-15 56.3 0.0 4e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Flagellar protein FliS Hpt PF01627.23 ABA79216.1 - 4.8e-10 39.6 0.8 4.8e-10 39.6 0.8 4.8 4 2 1 5 5 5 1 Hpt domain CheW PF01584.19 ABA79216.1 - 1e-09 38.1 0.6 2e-09 37.2 0.6 1.4 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 ABA79217.1 - 3.1e-21 75.6 0.1 3.8e-21 75.4 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GTA_TIM PF13547.6 ABA79217.1 - 0.021 14.1 0.0 0.026 13.8 0.0 1.1 1 0 0 1 1 1 0 GTA TIM-barrel-like domain ADH_zinc_N PF00107.26 ABA79217.1 - 0.04 13.9 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase MCPsignal PF00015.21 ABA79218.1 - 7.1e-48 162.7 31.6 3.5e-47 160.4 18.6 2.9 2 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP_N3 PF18575.1 ABA79218.1 - 5.4e-11 41.9 0.1 1.8e-09 37.0 0.0 3.1 2 0 0 2 2 2 1 HAMP N-terminal domain 3 HAMP PF00672.25 ABA79218.1 - 2.7e-05 24.4 8.1 0.00082 19.7 0.7 4.3 4 1 0 4 4 4 2 HAMP domain IFT57 PF10498.9 ABA79218.1 - 0.012 14.6 3.7 1.2 8.0 0.4 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 ABA79218.1 - 0.043 13.7 3.3 0.45 10.4 0.2 2.3 2 0 0 2 2 2 0 Sec34-like family HAUS6_N PF14661.6 ABA79218.1 - 0.18 11.3 5.5 0.18 11.4 0.3 2.2 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus TMPIT PF07851.13 ABA79218.1 - 0.24 10.6 4.6 2.2 7.5 0.4 2.1 2 0 0 2 2 2 0 TMPIT-like protein DUF948 PF06103.11 ABA79218.1 - 0.34 11.2 16.0 0.65 10.3 1.1 4.4 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.10 ABA79218.1 - 6.3 7.0 7.8 4.4 7.5 0.2 2.9 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Mod_r PF07200.13 ABA79218.1 - 6.7 6.8 10.4 8.3 6.5 0.7 3.3 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein AAA_31 PF13614.6 ABA79219.1 - 1.2e-23 84.0 0.0 1.5e-14 54.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 ABA79219.1 - 1.5e-19 70.3 0.0 1.8e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 ABA79219.1 - 8.4e-09 35.2 0.0 9.5e-05 22.0 0.0 2.4 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 ABA79219.1 - 1.3e-06 27.9 0.1 0.00099 18.5 0.2 2.2 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 ABA79219.1 - 2.3e-05 24.0 0.8 0.00034 20.1 0.1 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 ABA79219.1 - 3.9e-05 23.2 0.0 0.00021 20.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 ABA79219.1 - 5e-05 22.6 0.0 0.00012 21.4 0.1 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 ABA79219.1 - 0.014 14.7 0.0 0.066 12.5 0.1 1.9 2 0 0 2 2 2 0 VirC1 protein CLP1_P PF16575.5 ABA79219.1 - 0.027 14.3 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Methyltransf_24 PF13578.6 ABA79219.1 - 0.05 14.6 0.0 0.18 12.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain SRP54 PF00448.22 ABA79219.1 - 0.26 10.9 0.1 0.44 10.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CheW PF01584.19 ABA79220.1 - 6.5e-33 113.3 1.1 8.2e-33 113.0 1.1 1.1 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 ABA79221.1 - 5e-52 176.0 0.1 1.3e-51 174.7 0.0 1.6 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 ABA79221.1 - 2.7e-21 75.8 0.0 4.8e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain CheR PF01739.18 ABA79222.1 - 1.1e-48 165.3 0.0 1.5e-48 164.9 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain Methyltransf_23 PF13489.6 ABA79222.1 - 2.1e-07 30.9 0.0 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA79222.1 - 5.2e-07 30.3 0.0 0.0023 18.6 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain CheR_N PF03705.15 ABA79222.1 - 3.6e-06 26.6 0.1 6e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 ABA79222.1 - 7e-06 26.7 0.0 6e-05 23.7 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79222.1 - 1e-05 26.1 0.0 9.4e-05 23.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79222.1 - 0.0081 16.0 0.0 1.9 8.3 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain CheW PF01584.19 ABA79223.1 - 6.3e-20 71.2 0.0 1.2e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 ABA79223.1 - 8.8e-14 52.0 0.0 2e-13 50.8 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 ABA79223.1 - 0.00061 20.1 0.4 0.0028 18.0 0.4 2.1 1 1 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain Sigma54_activat PF00158.26 ABA79225.1 - 1.7e-63 213.3 0.0 2.4e-63 212.8 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 ABA79225.1 - 3.6e-16 59.5 0.0 1.2e-15 57.8 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 ABA79225.1 - 9.6e-09 35.4 0.0 1.6e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 ABA79225.1 - 1.3e-06 28.6 0.0 2.2e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_3 PF07726.11 ABA79225.1 - 5.1e-05 23.1 0.0 9e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 ABA79225.1 - 0.00033 20.1 0.1 0.11 11.8 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 ABA79225.1 - 0.0017 18.8 0.0 0.0032 17.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA79225.1 - 0.016 15.6 0.1 0.046 14.1 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain NACHT PF05729.12 ABA79225.1 - 0.031 14.2 0.0 0.43 10.5 0.0 2.6 3 1 0 3 3 3 0 NACHT domain ADH_zinc_N PF00107.26 ABA79225.1 - 0.039 13.9 1.8 0.1 12.5 1.3 1.9 1 1 1 2 2 2 0 Zinc-binding dehydrogenase NB-ARC PF00931.22 ABA79225.1 - 0.11 11.6 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NPIP PF06409.11 ABA79225.1 - 0.15 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Nuclear pore complex interacting protein (NPIP) RNA12 PF10443.9 ABA79225.1 - 0.21 10.3 0.0 0.31 9.7 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein ATPase_2 PF01637.18 ABA79225.1 - 0.28 11.0 0.0 4.7 7.1 0.0 2.0 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea FliE PF02049.18 ABA79226.1 - 8.6e-24 83.5 0.1 1e-23 83.2 0.1 1.1 1 0 0 1 1 1 1 Flagellar hook-basal body complex protein FliE YscJ_FliF PF01514.17 ABA79227.1 - 1.1e-54 185.0 0.0 2.5e-54 183.9 0.0 1.6 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family YscJ_FliF_C PF08345.11 ABA79227.1 - 5e-36 124.3 0.6 1.3e-35 122.9 0.0 1.9 2 0 0 2 2 2 1 Flagellar M-ring protein C-terminal FliG_C PF01706.16 ABA79228.1 - 4.9e-42 142.5 7.9 2.5e-39 133.8 2.5 3.2 3 0 0 3 3 3 2 FliG C-terminal domain FliG_N PF14842.6 ABA79228.1 - 1e-37 128.9 3.4 2.3e-29 102.0 0.0 3.1 3 0 0 3 3 3 2 FliG N-terminal domain FliG_M PF14841.6 ABA79228.1 - 7.5e-23 80.6 9.0 8.6e-21 74.0 3.7 3.6 4 1 0 4 4 4 2 FliG middle domain MgtE_N PF03448.17 ABA79228.1 - 1.2e-06 29.0 7.4 0.37 11.4 0.1 4.0 3 2 0 3 3 3 3 MgtE intracellular N domain Fe-S_assembly PF04384.13 ABA79228.1 - 0.041 14.5 0.0 0.11 13.1 0.0 1.7 1 0 0 1 1 1 0 Iron-sulphur cluster assembly DUF2551 PF10826.8 ABA79228.1 - 0.15 12.3 0.0 4.3 7.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2551) T3SS_needle_F PF09392.10 ABA79228.1 - 1.7 8.9 6.2 0.48 10.6 0.6 2.7 3 0 0 3 3 3 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF FliH PF02108.16 ABA79229.1 - 3.1e-06 27.3 0.0 5.2e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Flagellar assembly protein FliH Yae1_N PF09811.9 ABA79229.1 - 0.034 13.8 1.4 0.063 13.0 1.4 1.4 1 0 0 1 1 1 0 Essential protein Yae1, N terminal ATP-synt_ab PF00006.25 ABA79230.1 - 1.7e-60 204.3 0.2 2.2e-60 204.0 0.2 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 ABA79230.1 - 5.3e-22 77.5 0.1 1.2e-21 76.4 0.1 1.6 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain ABC_tran PF00005.27 ABA79230.1 - 0.0025 18.3 0.1 0.0051 17.3 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 ABA79230.1 - 0.019 15.4 0.9 0.056 13.8 0.4 2.0 2 1 0 2 2 2 0 AAA ATPase domain Sugar-bind PF04198.13 ABA79230.1 - 0.051 12.7 0.6 0.24 10.5 0.2 2.2 3 0 0 3 3 3 0 Putative sugar-binding domain MobB PF03205.14 ABA79230.1 - 0.16 11.8 0.1 8.8 6.2 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Flg_hook PF02120.16 ABA79232.1 - 1.4e-14 53.7 0.3 2.7e-14 52.8 0.3 1.4 1 0 0 1 1 1 1 Flagellar hook-length control protein FliK HpaP PF09483.10 ABA79232.1 - 0.0094 16.2 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 1 Type III secretion protein (HpaP) FliL PF03748.14 ABA79233.1 - 1.2e-15 57.9 0.0 1.5e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Flagellar basal body-associated protein FliL FliM PF02154.15 ABA79234.1 - 6.4e-22 78.4 0.0 7.9e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Flagellar motor switch protein FliM FliMN_C PF01052.20 ABA79234.1 - 2.3e-17 62.7 0.0 4.8e-17 61.7 0.0 1.5 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term FliMN_C PF01052.20 ABA79235.1 - 9.4e-25 86.4 1.5 1.1e-24 86.2 1.5 1.1 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term Glyco_hydro_65C PF03633.15 ABA79235.1 - 0.0065 16.4 0.4 0.57 10.1 0.4 2.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain FliO PF04347.13 ABA79236.1 - 9.6e-05 22.6 0.0 0.00012 22.3 0.0 1.1 1 0 0 1 1 1 1 Flagellar biosynthesis protein, FliO FliP PF00813.20 ABA79237.1 - 1.5e-74 250.0 12.8 1.9e-74 249.7 12.8 1.1 1 0 0 1 1 1 1 FliP family Bac_export_3 PF01313.19 ABA79238.1 - 3.6e-26 90.9 3.6 4.3e-26 90.6 3.6 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 3 Bac_export_1 PF01311.20 ABA79239.1 - 1.2e-58 198.4 22.1 1.4e-58 198.2 22.1 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Bac_export_2 PF01312.19 ABA79240.1 - 1e-97 327.3 0.2 1.2e-97 327.1 0.2 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family Apolipoprotein PF01442.18 ABA79241.1 - 0.046 13.6 0.4 0.046 13.6 0.4 1.6 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 ABA79241.1 - 0.12 12.4 0.1 1.1 9.3 0.0 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus PDZ_6 PF17820.1 ABA79242.1 - 0.018 14.9 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 PDZ domain UFC1 PF08694.11 ABA79242.1 - 0.72 9.5 2.5 1.4 8.5 2.5 1.4 1 0 0 1 1 1 0 Ubiquitin-fold modifier-conjugating enzyme 1 Sigma54_DBD PF04552.13 ABA79243.2 - 1.3e-59 200.4 0.0 1.8e-59 200.0 0.0 1.2 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 ABA79243.2 - 8.6e-32 110.4 0.0 3.4e-31 108.5 0.0 1.9 3 0 0 3 3 3 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 ABA79243.2 - 1.3e-15 57.0 3.9 2.4e-15 56.1 3.9 1.5 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) HTH_3 PF01381.22 ABA79243.2 - 0.0024 17.9 0.3 0.1 12.6 0.0 3.3 4 0 0 4 4 4 1 Helix-turn-helix HTH_IclR PF09339.10 ABA79243.2 - 0.0035 17.1 1.2 0.0088 15.8 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Phage_CII PF05269.11 ABA79243.2 - 0.004 17.3 0.0 0.0096 16.1 0.0 1.6 1 0 0 1 1 1 1 Bacteriophage CII protein HTH_23 PF13384.6 ABA79243.2 - 0.0042 16.8 0.2 0.041 13.7 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 ABA79243.2 - 0.0042 16.8 0.0 0.013 15.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA79243.2 - 0.0063 16.5 0.6 0.21 11.6 0.1 2.9 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 ABA79243.2 - 0.0069 16.7 2.8 0.05 13.9 0.0 3.5 2 1 0 2 2 2 1 Helix-turn-helix domain LacI PF00356.21 ABA79243.2 - 0.02 14.7 0.7 0.02 14.7 0.7 2.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family HTH_Tnp_ISL3 PF13542.6 ABA79243.2 - 0.096 12.1 0.1 0.37 10.3 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.6 ABA79243.2 - 0.1 13.1 0.6 17 6.0 0.4 2.7 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 ABA79243.2 - 0.14 12.0 0.1 0.14 12.0 0.1 3.9 4 0 0 4 4 3 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 ABA79243.2 - 0.25 11.4 11.2 13 5.9 0.0 4.5 3 1 1 4 4 4 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 ABA79243.2 - 0.35 10.4 3.5 0.55 9.8 0.1 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 MarR_2 PF12802.7 ABA79243.2 - 2.5 8.0 5.7 3.6 7.6 0.1 3.5 3 1 1 4 4 4 0 MarR family Flagellin_N PF00669.20 ABA79244.1 - 2.8e-39 134.4 14.6 2.8e-39 134.4 14.6 4.1 2 1 2 4 4 4 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 ABA79244.1 - 3.8e-24 84.9 9.3 3.8e-24 84.9 9.3 3.0 2 0 0 2 2 2 1 Bacterial flagellin C-terminal helical region Flagellin_IN PF07196.13 ABA79244.1 - 1.6e-13 50.6 23.8 8e-09 35.6 7.0 5.8 6 0 0 6 6 6 2 Flagellin hook IN motif Rotamase PF00639.21 ABA79244.1 - 0.17 12.9 0.3 0.17 12.9 0.3 3.7 3 1 1 4 4 4 0 PPIC-type PPIASE domain FliD_C PF07195.12 ABA79245.1 - 5.2e-35 121.0 0.1 1.7e-34 119.3 0.0 1.9 2 1 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus FliD_N PF02465.18 ABA79245.1 - 1.8e-08 34.9 9.2 1.8e-08 34.9 9.2 3.7 4 1 0 4 4 4 1 Flagellar hook-associated protein 2 N-terminus Sigma54_activat PF00158.26 ABA79246.2 - 7.7e-65 217.7 0.0 1e-64 217.3 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 ABA79246.2 - 1.7e-19 70.3 0.0 4.4e-19 69.0 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA79246.2 - 1.5e-10 40.7 0.5 3.9e-10 39.4 0.5 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 ABA79246.2 - 7.7e-07 29.2 0.0 1.3e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 ABA79246.2 - 4e-06 26.4 0.4 0.00036 20.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 ABA79246.2 - 0.00013 21.8 0.0 0.00022 21.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_50 PF18024.1 ABA79246.2 - 0.0007 19.1 0.1 0.0014 18.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AAA PF00004.29 ABA79246.2 - 0.022 15.2 0.0 0.035 14.5 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 ABA79246.2 - 0.13 11.8 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region SLT PF01464.20 ABA79247.1 - 2e-08 33.9 0.0 4.1e-08 32.9 0.0 1.5 1 1 0 1 1 1 1 Transglycosylase SLT domain PepSY_2 PF13670.6 ABA79247.1 - 0.9 9.6 4.4 0.69 10.0 0.7 2.6 3 1 0 3 3 3 0 Peptidase propeptide and YPEB domain Flagellin_C PF00700.21 ABA79248.1 - 1.8e-09 37.8 9.6 5.9e-09 36.2 2.9 3.3 3 0 0 3 3 3 1 Bacterial flagellin C-terminal helical region Flagellin_N PF00669.20 ABA79248.1 - 2.3e-06 27.8 0.8 2.3e-06 27.8 0.8 2.2 2 0 0 2 2 2 1 Bacterial flagellin N-terminal helical region Flagellin_IN PF07196.13 ABA79248.1 - 0.00086 19.5 0.3 0.0029 17.7 0.3 1.9 1 0 0 1 1 1 1 Flagellin hook IN motif Flagellin_IN PF07196.13 ABA79249.1 - 9.7e-13 48.1 14.0 5.4e-05 23.3 0.0 6.2 5 1 1 6 6 6 3 Flagellin hook IN motif Flg_bbr_C PF06429.13 ABA79249.1 - 7.5e-07 29.2 2.0 7.5e-07 29.2 2.0 2.7 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA79249.1 - 4.4e-06 26.5 0.2 4.4e-06 26.5 0.2 3.9 4 0 0 4 4 4 1 Flagella basal body rod protein hemP PF10636.9 ABA79249.1 - 0.11 12.4 0.0 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 Hemin uptake protein hemP DUF3150 PF11348.8 ABA79249.1 - 0.21 10.8 0.1 0.53 9.5 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3150) Rod-binding PF10135.9 ABA79250.1 - 7.1e-12 45.7 0.4 1.2e-11 45.0 0.4 1.5 1 1 0 1 1 1 1 Rod binding protein FlgI PF02119.16 ABA79251.2 - 3e-127 424.3 9.3 3.4e-127 424.1 9.3 1.0 1 0 0 1 1 1 1 Flagellar P-ring protein FlgH PF02107.16 ABA79252.1 - 1.9e-50 170.7 0.0 2.4e-50 170.4 0.0 1.0 1 0 0 1 1 1 1 Flagellar L-ring protein Flg_bbr_C PF06429.13 ABA79253.1 - 9e-21 73.8 0.3 9e-21 73.8 0.3 1.9 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA79253.1 - 4.2e-14 52.1 2.7 1.7e-13 50.2 2.7 2.1 1 0 0 1 1 1 1 Flagella basal body rod protein DUF2517 PF10725.9 ABA79253.1 - 0.16 11.7 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2517) Flg_bbr_C PF06429.13 ABA79254.1 - 1.1e-17 63.9 0.0 3.7e-17 62.2 0.0 1.9 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bbr_C PF06429.13 ABA79255.1 - 2.3e-18 66.1 0.8 7.2e-18 64.5 0.6 2.1 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal FlaE PF07559.14 ABA79255.1 - 2.7e-16 60.2 0.3 6.9e-16 58.9 0.3 1.7 1 0 0 1 1 1 1 Flagellar basal body protein FlaE Flg_bb_rod PF00460.20 ABA79255.1 - 2.2e-05 24.3 0.9 8.4e-05 22.4 0.9 2.1 1 0 0 1 1 1 1 Flagella basal body rod protein META PF03724.16 ABA79255.1 - 0.085 12.8 0.1 3 7.9 0.0 2.5 2 0 0 2 2 2 0 META domain FlgD PF03963.14 ABA79256.1 - 4.3e-23 81.4 6.6 6.4e-23 80.9 6.6 1.3 1 0 0 1 1 1 1 Flagellar hook capping protein - N-terminal region FlgD_ig PF13860.6 ABA79256.1 - 7.2e-13 48.2 0.4 7.2e-13 48.2 0.4 1.9 2 0 0 2 2 2 1 FlgD Ig-like domain FLgD_tudor PF13861.6 ABA79256.1 - 5.4e-11 42.5 0.0 1.4e-10 41.2 0.0 1.7 1 1 0 1 1 1 1 FlgD Tudor-like domain DUF4431 PF14485.6 ABA79256.1 - 0.012 15.3 0.1 7.6 6.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4431) Flg_bbr_C PF06429.13 ABA79257.1 - 1e-09 38.4 0.3 2.2e-09 37.3 0.0 1.7 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA79257.1 - 2.6e-07 30.4 1.9 5.6e-07 29.3 1.5 1.8 2 0 0 2 2 2 1 Flagella basal body rod protein MRP-S26 PF14943.6 ABA79257.1 - 0.15 12.0 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 Flg_bb_rod PF00460.20 ABA79258.1 - 0.0018 18.1 0.1 0.0037 17.2 0.1 1.6 1 0 0 1 1 1 1 Flagella basal body rod protein DUF3046 PF11248.8 ABA79258.1 - 0.092 13.1 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3046) Response_reg PF00072.24 ABA79260.2 - 6.7e-29 100.3 0.0 1.5e-28 99.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 ABA79260.2 - 1.2e-21 77.3 0.1 2e-21 76.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 ABA79260.2 - 6.3e-14 51.9 0.0 2.2e-13 50.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 ABA79260.2 - 1.5e-13 50.6 0.1 6.5e-13 48.5 0.1 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 ABA79260.2 - 9.7e-09 35.4 0.0 2.5e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 ABA79260.2 - 2.4e-07 30.6 0.0 9e-07 28.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 ABA79260.2 - 1.4e-06 28.5 0.2 6.1e-06 26.5 0.2 2.3 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.7 ABA79260.2 - 1.5e-05 25.1 0.0 3.9e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 PAS fold Hpt PF01627.23 ABA79260.2 - 0.00015 22.0 5.5 0.0007 19.8 5.5 2.3 1 0 0 1 1 1 1 Hpt domain HATPase_c_3 PF13589.6 ABA79260.2 - 0.023 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FleQ PF06490.11 ABA79260.2 - 0.12 12.7 0.0 0.43 11.0 0.0 2.0 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ DUF3285 PF11688.8 ABA79260.2 - 0.15 12.0 1.3 0.32 11.0 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) Neurensin PF14927.6 ABA79260.2 - 0.32 10.7 0.7 1.6 8.4 0.1 2.3 3 0 0 3 3 3 0 Neurensin Oxidored_molyb PF00174.19 ABA79261.1 - 3e-05 23.7 0.0 4.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Response_reg PF00072.24 ABA79262.1 - 8.8e-20 71.0 0.0 1.3e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 ABA79262.1 - 1.2e-18 66.4 1.0 1.8e-18 65.8 0.3 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 ABA79262.1 - 0.019 14.5 0.1 0.07 12.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 GARS_A PF01071.19 ABA79262.1 - 0.054 13.3 0.0 0.095 12.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Sigma70_r4_2 PF08281.12 ABA79262.1 - 0.086 12.5 0.3 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2089 PF09862.9 ABA79262.1 - 0.099 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Gemini_AL1_M PF08283.11 ABA79262.1 - 0.17 12.0 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Geminivirus rep protein central domain DUF892 PF05974.12 ABA79263.1 - 4.3e-58 195.8 5.5 4.8e-58 195.7 5.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 ABA79263.1 - 0.0037 17.2 1.8 0.012 15.5 0.5 2.0 1 1 1 2 2 2 2 Ferritin-like domain HAD_2 PF13419.6 ABA79264.1 - 3.1e-14 53.4 0.0 5.5e-14 52.6 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA79264.1 - 1e-13 52.1 0.3 7.7e-12 45.9 0.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA79264.1 - 2.5e-06 27.5 0.0 4.2e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 ABA79264.1 - 0.0036 17.7 0.3 0.0049 17.3 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 ABA79264.1 - 0.085 13.0 0.0 0.35 11.0 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Sugar-bind PF04198.13 ABA79265.1 - 9e-82 274.0 0.0 1.1e-81 273.7 0.0 1.1 1 0 0 1 1 1 1 Putative sugar-binding domain MarR_2 PF12802.7 ABA79265.1 - 4.9e-06 26.3 0.5 2e-05 24.4 0.5 2.1 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 ABA79265.1 - 1.5e-05 24.4 0.6 6.1e-05 22.5 0.5 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 ABA79265.1 - 0.00017 21.2 0.1 0.00035 20.2 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 ABA79265.1 - 0.00036 20.2 0.5 0.00098 18.9 0.5 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 ABA79265.1 - 0.0011 18.5 0.3 0.043 13.4 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 ABA79265.1 - 0.0013 18.8 0.4 0.0048 17.0 0.4 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA79265.1 - 0.0015 18.4 0.1 0.0048 16.8 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PCI PF01399.27 ABA79265.1 - 0.037 14.6 0.0 0.065 13.8 0.0 1.4 1 0 0 1 1 1 0 PCI domain KORA PF16509.5 ABA79265.1 - 0.04 14.2 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_38 PF13936.6 ABA79265.1 - 0.048 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 ABA79265.1 - 0.086 12.9 0.2 0.2 11.7 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_19 PF12844.7 ABA79265.1 - 0.17 11.9 0.1 0.48 10.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain SBP_bac_1 PF01547.25 ABA79266.1 - 1.5e-56 192.7 13.0 2.2e-56 192.1 13.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA79266.1 - 2.3e-32 112.9 12.6 2.3e-32 112.9 12.6 1.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Enolase_like_N PF18374.1 ABA79266.1 - 0.23 10.8 1.8 0.37 10.2 0.1 2.3 2 0 0 2 2 2 0 Enolase N-terminal domain-like BPD_transp_1 PF00528.22 ABA79267.1 - 3.1e-17 62.9 19.5 3.1e-17 62.9 19.5 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Baculo_gp64 PF03273.13 ABA79267.1 - 0.083 11.7 1.3 0.12 11.1 1.3 1.1 1 0 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family BPD_transp_1 PF00528.22 ABA79268.1 - 7e-17 61.8 15.4 7e-17 61.8 15.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ASFV_L11L PF05293.11 ABA79268.1 - 1.5 9.2 5.5 1.3 9.5 0.5 2.9 3 0 0 3 3 3 0 African swine fever virus (ASFV) L11L protein ABC_tran PF00005.27 ABA79269.1 - 3.5e-31 108.5 0.0 5.3e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA79269.1 - 3.6e-11 43.1 0.4 8e-11 42.0 0.4 1.6 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.17 ABA79269.1 - 3.9e-10 39.9 0.1 8.6e-10 38.8 0.1 1.6 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 ABA79269.1 - 6.9e-07 29.4 0.0 0.00088 19.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA79269.1 - 3.6e-05 23.7 0.1 0.00022 21.1 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase OB_MalK PF17912.1 ABA79269.1 - 0.00026 21.7 1.5 1.1 10.1 0.2 3.1 1 1 1 2 2 2 2 MalK OB fold domain SMC_N PF02463.19 ABA79269.1 - 0.00073 19.0 0.1 0.011 15.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA79269.1 - 0.0023 18.3 0.0 0.0051 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA79269.1 - 0.0055 16.4 0.0 0.017 14.9 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA79269.1 - 0.0083 16.7 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA79269.1 - 0.012 15.9 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA79269.1 - 0.013 15.6 0.2 0.024 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA79269.1 - 0.022 14.5 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 ABA79269.1 - 0.034 14.6 0.0 0.069 13.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 ABA79269.1 - 0.044 14.0 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 ABA79269.1 - 0.05 13.5 0.0 0.075 13.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 ABA79269.1 - 0.082 13.3 0.0 0.23 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 ABA79269.1 - 0.086 12.8 0.1 0.22 11.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 ABA79269.1 - 0.098 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 ABA79269.1 - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA79269.1 - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 ABA79269.1 - 0.11 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase PhoH PF02562.16 ABA79269.1 - 0.12 11.8 0.0 1.3 8.4 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.22 ABA79269.1 - 0.2 10.8 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain adh_short_C2 PF13561.6 ABA79270.1 - 2.4e-57 194.2 4.6 3.3e-57 193.7 4.6 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA79270.1 - 3.1e-54 183.4 1.8 3.9e-54 183.1 1.8 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA79270.1 - 1.1e-08 35.2 0.6 2e-08 34.3 0.6 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA79270.1 - 0.013 15.0 0.2 0.018 14.5 0.2 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Mannitol_dh_C PF08125.13 ABA79271.1 - 8.6e-95 316.9 0.0 1.6e-94 316.0 0.0 1.4 2 0 0 2 2 2 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 ABA79271.1 - 6.7e-51 172.4 0.0 1e-50 171.8 0.0 1.3 1 0 0 1 1 1 1 Mannitol dehydrogenase Rossmann domain DctP PF03480.13 ABA79272.1 - 4e-72 243.0 0.0 4.8e-72 242.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 Trehalase_Ca-bi PF07492.11 ABA79272.1 - 0.18 11.6 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain DctM PF06808.12 ABA79273.1 - 6.5e-128 427.1 60.1 1.2e-126 423.0 60.1 2.0 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctQ PF04290.12 ABA79274.1 - 3.6e-24 85.2 4.2 3.9e-24 85.1 3.6 1.3 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component Oxidored_q4 PF00507.19 ABA79275.1 - 3.8e-21 75.1 0.2 4.5e-21 74.9 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 ABA79276.1 - 3.2e-22 78.8 0.0 4.2e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 ABA79277.1 - 9.1e-106 352.9 0.0 1.2e-105 352.6 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 ABA79277.1 - 1.3e-25 90.4 0.0 2.4e-25 89.5 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 ABA79277.1 - 0.27 10.1 0.0 0.51 9.2 0.0 1.5 1 1 1 2 2 2 0 Nickel-dependent hydrogenase 2Fe-2S_thioredx PF01257.19 ABA79278.1 - 6.4e-41 139.6 0.0 7.7e-41 139.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_51K PF01512.17 ABA79279.1 - 8.3e-46 155.6 0.0 1.2e-45 155.2 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 ABA79279.1 - 4.4e-24 84.4 0.1 7.7e-24 83.6 0.1 1.3 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 ABA79279.1 - 1.2e-11 44.2 0.3 3.8e-11 42.7 0.3 1.9 1 0 0 1 1 1 1 SLBB domain NADH-G_4Fe-4S_3 PF10588.9 ABA79280.1 - 1e-12 47.4 0.5 1e-12 47.4 0.5 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer2_4 PF13510.6 ABA79280.1 - 7.3e-12 45.2 0.1 7.3e-12 45.2 0.1 2.8 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.16 ABA79280.1 - 9.8e-11 41.5 0.1 2.8e-10 40.0 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2 PF00111.27 ABA79280.1 - 1.3e-07 31.4 2.0 2.6e-07 30.5 0.4 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.22 ABA79280.1 - 0.00051 19.1 0.0 0.12 11.3 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 ABA79280.1 - 0.0058 16.6 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer4 PF00037.27 ABA79280.1 - 0.16 11.9 2.8 2.7 7.9 0.5 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain NADHdh PF00146.21 ABA79281.1 - 4.1e-107 357.9 15.1 5e-107 357.6 15.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 ABA79282.1 - 4.4e-14 51.6 17.4 9.2e-09 34.8 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 ABA79282.1 - 7.7e-11 42.4 12.5 2.4e-10 40.8 13.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 ABA79282.1 - 5.5e-10 39.2 8.9 2.1e-05 24.6 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA79282.1 - 8e-10 39.5 5.9 8.5e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 ABA79282.1 - 2.7e-09 37.0 21.9 1.6e-06 28.1 13.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA79282.1 - 1.3e-08 34.9 35.4 9.6e-06 25.7 13.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA79282.1 - 2.3e-08 34.3 2.1 0.0018 18.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA79282.1 - 1.1e-06 29.1 5.0 0.014 16.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA79282.1 - 7.7e-06 25.7 13.6 0.012 15.7 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 ABA79282.1 - 3.9e-05 23.5 18.6 0.0024 17.9 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 ABA79282.1 - 0.00039 20.7 14.7 0.071 13.6 5.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 ABA79282.1 - 0.001 19.2 5.0 0.23 11.7 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 ABA79282.1 - 0.023 15.6 3.4 0.023 15.6 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 ABA79282.1 - 0.21 11.7 5.8 0.51 10.5 4.6 1.8 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 ABA79282.1 - 0.3 11.7 16.5 1.8 9.1 1.7 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 ABA79282.1 - 0.47 11.3 13.9 1.7 9.5 2.0 2.2 1 1 1 3 3 3 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 ABA79282.1 - 1.3 9.3 7.0 1.3 9.3 0.8 2.3 1 1 0 2 2 2 0 c-SKI Smad4 binding domain Oxidored_q3 PF00499.20 ABA79283.1 - 2.3e-26 92.2 10.8 2.7e-26 92.0 10.8 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF1980 PF09323.10 ABA79283.1 - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Phage_holin_3_6 PF07332.11 ABA79283.1 - 4.8 7.2 28.5 0.83 9.7 3.9 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Oxidored_q2 PF00420.24 ABA79284.1 - 2.2e-13 49.7 6.7 2.8e-13 49.4 6.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF5392 PF17370.2 ABA79284.1 - 0.42 10.7 2.3 0.6 10.2 2.3 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5392) Proton_antipo_M PF00361.20 ABA79285.1 - 9.9e-69 231.8 22.9 9.9e-69 231.8 22.9 2.0 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 ABA79285.1 - 2.9e-10 40.1 1.0 8.7e-10 38.5 1.0 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 ABA79286.1 - 4.3e-45 154.2 24.1 7.4e-45 153.4 24.1 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter PLDc_2 PF13091.6 ABA79287.2 - 2.4e-14 53.4 0.0 4.4e-11 42.8 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 ABA79287.2 - 5.5e-11 42.2 0.6 5.1e-05 23.3 0.4 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif DRY_EERY PF09750.9 ABA79287.2 - 0.19 12.0 0.8 0.35 11.1 0.3 1.6 2 0 0 2 2 2 0 Alternative splicing regulator DUF4112 PF13430.6 ABA79288.1 - 4.5e-31 107.2 0.0 5e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) Cytochrome_CBB3 PF13442.6 ABA79289.1 - 1.6e-23 82.8 0.1 2.5e-11 43.7 0.0 3.4 3 0 0 3 3 3 3 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA79289.1 - 1.7e-12 48.3 0.1 0.00035 21.7 0.0 3.9 3 1 0 3 3 3 3 Cytochrome c Cytochrome_C7 PF14522.6 ABA79289.1 - 0.0035 17.3 0.1 13 5.9 0.0 3.1 3 0 0 3 3 3 2 Cytochrome c7 and related cytochrome c DUF1924 PF09086.11 ABA79289.1 - 0.0058 17.0 0.9 9.5 6.7 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1924) Cytochrom_c3_2 PF14537.6 ABA79289.1 - 0.012 16.1 0.0 26 5.3 0.0 3.1 3 0 0 3 3 3 0 Cytochrome c3 Dioxygenase_N PF04444.14 ABA79289.1 - 0.077 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Catechol dioxygenase N terminus DUF3365 PF11845.8 ABA79289.1 - 0.23 11.8 0.1 20 5.5 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3365) UPF0220 PF05255.11 ABA79289.1 - 0.24 10.9 0.4 0.36 10.4 0.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) Arabinose_trans PF04602.12 ABA79290.1 - 0.0054 15.6 1.9 0.0063 15.4 1.9 1.1 1 0 0 1 1 1 1 Mycobacterial cell wall arabinan synthesis protein COX1 PF00115.20 ABA79291.1 - 1.4e-129 432.8 53.9 1.4e-129 432.8 53.9 2.6 2 1 0 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 ABA79292.1 - 6.3e-15 55.1 0.0 1.2e-14 54.3 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cytochrom_C PF00034.21 ABA79292.1 - 4.2e-10 40.6 0.0 6.7e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA79292.1 - 3.6e-07 30.4 0.0 1e-06 29.0 0.0 1.8 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III FixO PF02433.15 ABA79292.1 - 0.0067 15.9 0.0 0.38 10.2 0.0 2.4 2 1 0 2 2 2 1 Cytochrome C oxidase, mono-heme subunit/FixO Cupredoxin_1 PF13473.6 ABA79292.1 - 0.081 13.1 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain DUF4880 PF16220.5 ABA79292.1 - 1.9 8.4 8.1 5.7 6.9 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4880) PAP2 PF01569.21 ABA79293.1 - 3.2e-24 85.2 8.3 3.2e-24 85.2 8.3 2.1 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 ABA79293.1 - 0.00013 21.7 18.2 0.00014 21.6 16.0 2.2 1 1 1 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 ABA79293.1 - 0.024 15.2 1.0 0.024 15.2 1.0 2.1 2 0 0 2 2 2 0 PAP2 superfamily C-terminal DUF962 PF06127.11 ABA79293.1 - 1.8 8.7 7.6 4.9 7.3 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF962) Autoind_bind PF03472.15 ABA79294.1 - 2.3e-18 66.1 0.2 2.9e-18 65.8 0.2 1.1 1 0 0 1 1 1 1 Autoinducer binding domain zf_UBZ PF18439.1 ABA79294.1 - 0.018 14.6 0.4 0.034 13.7 0.4 1.4 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger Autoind_bind PF03472.15 ABA79295.1 - 2e-13 50.1 0.0 3.6e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Autoinducer binding domain GerE PF00196.19 ABA79295.1 - 3.4e-11 42.5 1.0 5.1e-11 41.9 1.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA79295.1 - 0.001 18.7 0.4 0.002 17.8 0.4 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 ABA79295.1 - 0.0043 17.0 0.1 0.0068 16.3 0.1 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_29 PF13551.6 ABA79295.1 - 0.03 14.3 0.1 0.079 13.0 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn helix DUF2089 PF09862.9 ABA79295.1 - 0.034 14.2 0.0 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Sigma70_r4 PF04545.16 ABA79295.1 - 0.041 13.4 0.1 0.081 12.5 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 ABA79295.1 - 0.051 13.4 2.6 0.45 10.4 0.0 3.0 3 1 0 3 3 3 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 ABA79295.1 - 0.11 12.4 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_26 PF13443.6 ABA79295.1 - 0.15 12.5 1.3 0.2 12.1 0.2 1.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Autoind_bind PF03472.15 ABA79296.1 - 4.8e-37 126.7 0.3 6.8e-37 126.2 0.3 1.2 1 0 0 1 1 1 1 Autoinducer binding domain GerE PF00196.19 ABA79296.1 - 5e-18 64.4 0.0 8.3e-18 63.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 ABA79296.1 - 3e-06 27.2 0.1 8.3e-05 22.6 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA79296.1 - 4.9e-06 26.2 0.1 7.8e-05 22.3 0.1 2.7 2 1 1 3 3 3 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 ABA79296.1 - 6e-05 22.6 0.0 0.00013 21.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 ABA79296.1 - 0.00021 21.0 0.1 0.0015 18.3 0.1 2.5 2 1 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 ABA79296.1 - 0.00027 20.4 0.1 0.00062 19.2 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 ABA79296.1 - 0.001 18.8 0.1 0.0025 17.5 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 ABA79296.1 - 0.0076 16.2 0.1 0.011 15.7 0.1 1.2 1 0 0 1 1 1 1 ECF sigma factor HTH_24 PF13412.6 ABA79296.1 - 0.0093 15.5 0.0 0.058 13.0 0.0 2.3 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding DIOX_N PF14226.6 ABA79296.1 - 0.14 12.9 0.0 0.28 11.9 0.0 1.6 1 1 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal Autoind_synth PF00765.17 ABA79298.1 - 1e-85 285.9 0.0 1.2e-85 285.7 0.0 1.0 1 0 0 1 1 1 1 Autoinducer synthase Acetyltransf_5 PF13444.6 ABA79298.1 - 9.2e-08 32.7 0.0 1.6e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DHBP_synthase PF00926.19 ABA79299.1 - 0.11 12.0 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 3,4-dihydroxy-2-butanone 4-phosphate synthase MdoG PF04349.12 ABA79300.2 - 4.1e-181 603.1 0.0 4.6e-181 602.9 0.0 1.0 1 0 0 1 1 1 1 Periplasmic glucan biosynthesis protein, MdoG Glyco_trans_2_3 PF13632.6 ABA79302.1 - 4.1e-19 69.3 0.2 4.1e-19 69.3 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 ABA79302.1 - 3.7e-12 46.1 0.0 6e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 ABA79302.1 - 1.9e-10 40.8 0.0 1.1e-09 38.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 OpgC_C PF10129.9 ABA79303.1 - 1e-109 366.7 30.2 1.2e-109 366.6 30.2 1.0 1 0 0 1 1 1 1 OpgC protein Acyl_transf_3 PF01757.22 ABA79303.1 - 0.0016 17.6 38.8 0.002 17.2 38.8 1.1 1 0 0 1 1 1 1 Acyltransferase family ABC_tran PF00005.27 ABA79304.1 - 2.6e-33 115.4 0.0 3.5e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter NIL PF09383.10 ABA79304.1 - 2.8e-17 62.3 0.0 5.3e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 NIL domain AAA_21 PF13304.6 ABA79304.1 - 2.2e-05 24.4 1.2 0.041 13.7 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79304.1 - 0.001 18.5 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA79304.1 - 0.0015 18.8 0.6 0.032 14.5 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA79304.1 - 0.0031 17.2 0.2 0.0065 16.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA79304.1 - 0.0072 16.1 1.0 0.017 14.9 1.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA79304.1 - 0.03 14.2 0.1 0.055 13.4 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 ABA79304.1 - 0.073 13.6 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 ABA79304.1 - 0.074 13.4 1.1 0.18 12.1 1.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 ABA79304.1 - 0.1 12.7 0.2 0.21 11.7 0.2 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 ABA79304.1 - 0.12 11.1 1.2 5.9 5.6 0.4 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 ABA79304.1 - 0.14 12.4 0.2 0.92 9.8 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 ABA79305.1 - 3.6e-27 95.3 13.0 5.1e-27 94.8 13.0 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.21 ABA79305.1 - 9.4 6.8 19.6 0.37 11.3 3.9 2.6 2 1 0 2 2 2 0 FtsX-like permease family Lipoprotein_9 PF03180.14 ABA79306.1 - 1.2e-95 319.2 0.0 1.3e-95 319.0 0.0 1.0 1 0 0 1 1 1 1 NLPA lipoprotein NMT1 PF09084.11 ABA79306.1 - 0.018 15.0 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 NMT1/THI5 like PepSY_2 PF13670.6 ABA79306.1 - 0.022 14.8 0.1 0.045 13.8 0.1 1.6 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain Na_H_antiporter PF03553.14 ABA79307.1 - 2.3e-58 197.9 39.0 7.7e-53 179.7 17.7 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Phage_integrase PF00589.22 ABA79310.2 - 1.3e-14 54.4 0.0 1.9e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family HTH_23 PF13384.6 ABA79310.2 - 0.015 15.0 0.1 0.11 12.3 0.1 2.5 1 0 0 1 1 1 0 Homeodomain-like domain EutK_C PF16365.5 ABA79310.2 - 0.034 14.2 1.1 0.38 10.8 0.2 2.4 2 0 0 2 2 2 0 Ethanolamine utilization protein EutK C-terminus HTH_18 PF12833.7 ABA79310.2 - 0.077 13.3 0.5 0.23 11.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 ABA79310.2 - 0.093 12.5 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 ABA79310.2 - 0.86 10.0 11.5 2.9 8.3 2.1 4.3 3 2 1 4 4 4 0 Helix-turn-helix domain DUF4381 PF14316.6 ABA79311.2 - 0.064 13.5 0.1 0.094 13.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Ribosomal_S6 PF01250.17 ABA79313.1 - 1e-26 93.0 0.1 1.2e-26 92.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S6 Ribosomal_S18 PF01084.20 ABA79314.1 - 1.1e-24 86.4 0.4 1.2e-24 86.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S18 Ribosomal_L9_N PF01281.19 ABA79315.1 - 3.6e-24 84.1 0.2 8.5e-24 82.9 0.2 1.7 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain Ribosomal_L9_C PF03948.14 ABA79315.1 - 1.7e-23 82.8 0.1 1.7e-23 82.8 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L9, C-terminal domain Trigger_C PF05698.14 ABA79316.1 - 5.4e-35 120.8 3.7 5.4e-35 120.8 3.7 2.6 3 0 0 3 3 3 1 Bacterial trigger factor protein (TF) C-terminus Trigger_N PF05697.13 ABA79316.1 - 1.4e-30 106.5 2.0 1.4e-30 106.5 2.0 2.7 4 0 0 4 4 4 1 Bacterial trigger factor protein (TF) FKBP_C PF00254.28 ABA79316.1 - 4.4e-16 59.0 0.2 1.3e-15 57.5 0.2 1.8 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2203 PF09969.9 ABA79316.1 - 0.12 13.1 0.2 0.12 13.1 0.2 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) PSK_trans_fac PF07704.11 ABA79316.1 - 0.32 11.8 5.1 6.1 7.7 1.2 3.6 3 0 0 3 3 3 0 Rv0623-like transcription factor Hint_2 PF13403.6 ABA79317.1 - 4.7e-13 49.6 0.1 1e-12 48.6 0.1 1.5 1 1 0 1 1 1 1 Hint domain SMP PF04927.12 ABA79317.1 - 0.031 14.7 0.4 0.061 13.8 0.4 1.5 1 0 0 1 1 1 0 Seed maturation protein P-II PF00543.22 ABA79318.1 - 1.9e-43 147.2 1.1 2.1e-43 147.1 1.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF2344 PF10105.9 ABA79318.1 - 0.0073 16.2 0.0 0.008 16.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2344) DUF3240 PF11582.8 ABA79318.1 - 0.017 15.2 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3240) SPOUT_MTase_2 PF14419.6 ABA79318.1 - 0.028 13.8 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Pro_Al_protease PF02983.14 ABA79318.1 - 1.4 9.0 4.4 11 6.2 1.7 2.2 2 0 0 2 2 2 0 Alpha-lytic protease prodomain Gln-synt_C PF00120.24 ABA79319.1 - 2.2e-131 438.0 0.0 2.7e-131 437.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 ABA79319.1 - 1.3e-27 95.4 0.1 2.4e-27 94.5 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HisKA_2 PF07568.12 ABA79320.1 - 1.6e-21 76.2 0.0 4e-21 74.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.24 ABA79320.1 - 1.6e-20 73.3 0.1 3.5e-20 72.2 0.0 1.6 1 1 0 1 1 1 1 Response regulator receiver domain HWE_HK PF07536.14 ABA79320.1 - 1.7e-09 38.2 0.1 4.7e-09 36.8 0.1 1.8 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c PF02518.26 ABA79320.1 - 1.9e-09 38.0 0.0 7.6e-09 36.1 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA79320.1 - 5.5e-06 26.4 0.4 4.2e-05 23.5 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Response_reg PF00072.24 ABA79321.1 - 1.6e-20 73.3 0.1 1.9e-20 73.1 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain CHASE3 PF05227.13 ABA79322.1 - 1.1e-26 93.4 4.9 1.1e-26 93.4 4.9 3.1 3 0 0 3 3 3 1 CHASE3 domain HATPase_c PF02518.26 ABA79322.1 - 2.6e-22 79.4 0.0 5.5e-22 78.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA79322.1 - 8.5e-08 32.1 0.1 8.5e-08 32.1 0.1 3.4 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 ABA79322.1 - 5.2e-05 23.1 0.0 0.00011 22.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 ABA79322.1 - 0.00021 21.3 0.0 0.00056 19.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 ABA79322.1 - 0.011 15.5 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LapA_dom PF06305.11 ABA79322.1 - 0.15 11.9 3.5 3.6 7.5 0.7 2.6 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain LPG_synthase_TM PF03706.13 ABA79322.1 - 0.32 10.5 4.1 1 8.8 0.6 2.2 2 0 0 2 2 2 0 Lysylphosphatidylglycerol synthase TM region DUF4381 PF14316.6 ABA79322.1 - 3 8.1 7.5 4.2 7.6 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) AAA_5 PF07728.14 ABA79323.2 - 1.9e-07 31.2 0.0 8.7e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA79323.2 - 1.9e-07 31.6 0.0 3.6e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 ABA79323.2 - 1.3e-06 28.3 0.0 2.6e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA79323.2 - 0.0002 21.8 0.3 0.0018 18.7 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 ABA79323.2 - 0.0044 17.2 0.0 0.015 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 ABA79323.2 - 0.016 14.4 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) WW PF00397.26 ABA79323.2 - 0.016 15.3 2.9 0.016 15.3 2.9 1.9 2 0 0 2 2 2 0 WW domain Viral_helicase1 PF01443.18 ABA79323.2 - 0.039 13.7 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 ABA79323.2 - 0.051 13.8 0.0 0.17 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA79323.2 - 0.099 13.2 0.0 0.29 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 ABA79323.2 - 0.2 11.7 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 ABA79323.2 - 0.2 11.6 0.0 0.37 10.8 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 ABA79323.2 - 0.24 11.8 0.0 0.44 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF2201_N PF13203.6 ABA79324.1 - 6.5e-70 235.8 1.7 8.2e-70 235.5 1.7 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.9 ABA79324.1 - 4e-35 120.6 0.1 7.4e-35 119.8 0.1 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.14 ABA79324.1 - 2.2e-05 24.0 0.1 3.5e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein NAD_binding_2 PF03446.15 ABA79326.1 - 7.7e-46 156.1 6.8 1.1e-45 155.7 6.8 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 ABA79326.1 - 2.4e-41 140.8 1.5 3.2e-41 140.4 0.0 1.9 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 ABA79326.1 - 2.4e-07 31.2 0.3 8.3e-07 29.5 0.3 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 ABA79326.1 - 7e-06 25.7 0.2 0.00058 19.5 0.0 2.2 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 ABA79326.1 - 0.00036 20.5 1.2 0.3 11.1 0.1 2.3 1 1 1 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 ABA79326.1 - 0.00037 20.4 0.2 0.0013 18.6 0.5 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 ABA79326.1 - 0.0015 18.1 0.1 0.003 17.1 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 ABA79326.1 - 0.0093 15.6 1.1 0.12 12.0 0.1 2.3 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 ABA79326.1 - 0.017 14.5 0.2 0.024 14.0 0.2 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 ABA79326.1 - 0.038 14.7 0.5 1.7 9.4 0.1 2.5 1 1 1 2 2 2 0 Methyltransferase domain PDH PF02153.17 ABA79326.1 - 0.14 11.1 0.1 0.18 10.8 0.1 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase ECH_2 PF16113.5 ABA79327.1 - 8.4e-102 341.1 0.0 1.2e-101 340.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 ABA79327.1 - 2.1e-31 109.1 0.0 5.2e-31 107.8 0.0 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase Acyl-CoA_dh_1 PF00441.24 ABA79328.1 - 3.5e-46 157.1 6.2 6e-46 156.4 6.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 ABA79328.1 - 1e-31 109.9 0.1 2.5e-31 108.6 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 ABA79328.1 - 4.1e-25 87.8 0.0 1.1e-24 86.4 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 ABA79328.1 - 1.1e-19 71.0 3.2 2.2e-19 70.0 3.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Glyco_hydro_26 PF02156.15 ABA79330.1 - 2.7e-07 30.3 0.0 3.7e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 ENOD93 PF03386.14 ABA79330.1 - 0.029 14.2 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Early nodulin 93 ENOD93 protein Glyco_transf_21 PF13506.6 ABA79331.1 - 5.5e-28 97.6 0.0 1.2e-27 96.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 ABA79331.1 - 6.2e-17 62.2 2.8 6.2e-17 62.2 2.8 2.9 2 1 1 3 3 3 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 ABA79331.1 - 2.7e-11 43.8 0.1 6e-11 42.7 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 ABA79331.1 - 1.4e-06 28.2 0.0 2.9e-06 27.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Cellulose_synt PF03552.14 ABA79331.1 - 0.00014 20.6 0.9 0.00032 19.4 0.0 1.8 2 0 0 2 2 2 1 Cellulose synthase Epimerase PF01370.21 ABA79332.1 - 4.6e-53 180.1 0.0 5.5e-53 179.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA79332.1 - 7e-46 157.1 0.0 9e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 ABA79332.1 - 9.6e-17 60.9 0.0 8.2e-16 57.8 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 ABA79332.1 - 2.6e-16 59.6 0.0 3.7e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 ABA79332.1 - 3.1e-11 42.9 0.1 1.6e-09 37.3 0.1 2.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 ABA79332.1 - 5.8e-10 39.4 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 ABA79332.1 - 5.6e-05 22.4 0.0 0.0052 16.0 0.0 2.5 2 1 0 2 2 2 1 Male sterility protein adh_short PF00106.25 ABA79332.1 - 0.00052 19.5 0.0 0.0067 15.9 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 ABA79332.1 - 0.0025 17.4 0.2 0.0066 16.0 0.1 1.7 2 1 0 2 2 2 1 NmrA-like family KR PF08659.10 ABA79332.1 - 0.0031 17.4 0.6 0.063 13.2 0.6 2.5 1 1 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 ABA79333.1 - 1.4e-50 172.6 0.0 4.9e-50 170.8 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 ABA79333.1 - 1.2e-48 165.8 0.0 1.4e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA79333.1 - 4.1e-09 36.0 0.0 6.4e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 ABA79333.1 - 1.8e-07 30.5 0.0 2.7e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 ABA79333.1 - 7.6e-06 25.3 0.0 0.091 11.9 0.1 2.5 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 ABA79333.1 - 0.00054 19.5 0.0 0.00086 18.8 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 ABA79333.1 - 0.0072 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 ABA79333.1 - 0.012 14.8 0.0 0.17 11.0 0.0 2.4 2 1 0 2 2 2 0 Polysaccharide biosynthesis protein SBP_bac_8 PF13416.6 ABA79334.2 - 4.8e-41 141.4 0.9 5.8e-41 141.1 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA79334.2 - 1.2e-16 61.6 4.8 7.4e-16 59.0 4.5 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA79334.2 - 6.6e-12 45.4 0.1 1.1e-11 44.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA79336.1 - 1.7e-10 40.9 42.9 2.1e-06 27.6 22.6 3.9 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF996 PF06195.13 ABA79336.1 - 1.7 8.9 8.6 0.39 11.0 0.3 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF996) DUF2312 PF10073.9 ABA79337.1 - 8.4e-32 108.6 5.9 9.5e-32 108.5 5.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) GAT PF03127.14 ABA79337.1 - 0.077 13.3 1.1 10 6.5 0.0 2.4 3 0 0 3 3 3 0 GAT domain CPSase_L_D3 PF02787.19 ABA79337.1 - 0.088 13.2 0.9 0.11 12.9 0.9 1.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF1090 PF06476.12 ABA79337.1 - 0.11 12.6 3.2 0.13 12.4 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) DUF1345 PF07077.11 ABA79338.1 - 0.16 11.7 1.6 0.18 11.5 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) DUF202 PF02656.15 ABA79338.1 - 0.3 11.6 4.6 0.4 11.1 4.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF5337 PF17272.2 ABA79338.1 - 0.77 9.6 7.8 0.24 11.3 1.7 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5337) zf-dskA_traR PF01258.17 ABA79339.1 - 4.4e-10 39.3 3.4 4.4e-10 39.3 3.4 2.1 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_2 PF13240.6 ABA79339.1 - 0.016 14.9 2.6 0.32 10.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HalX PF08663.10 ABA79339.1 - 0.052 13.9 3.2 0.14 12.5 0.7 2.3 1 1 1 2 2 2 0 HalX domain Cortex-I_coil PF09304.10 ABA79339.1 - 0.054 13.7 0.6 0.071 13.3 0.6 1.1 1 0 0 1 1 1 0 Cortexillin I, coiled coil ABC_tran_CTD PF16326.5 ABA79339.1 - 0.072 13.3 4.6 0.13 12.5 0.7 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain FPP PF05911.11 ABA79339.1 - 0.13 10.5 0.1 0.15 10.2 0.1 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil DUF442 PF04273.13 ABA79340.1 - 6.3e-31 106.7 0.0 7.8e-31 106.4 0.0 1.1 1 0 0 1 1 1 1 Putative phosphatase (DUF442) LPD26 PF18842.1 ABA79340.1 - 0.025 14.5 0.0 3.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Large polyvalent protein associated domain 26 FliMN_C PF01052.20 ABA79341.1 - 1.7e-15 56.8 0.0 3.1e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term HATPase_c PF02518.26 ABA79342.1 - 2e-21 76.6 0.0 5e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA79342.1 - 1.9e-16 59.8 0.7 1.9e-16 59.8 0.7 2.4 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SSF PF00474.17 ABA79342.1 - 1.6e-06 27.2 2.3 1.6e-06 27.2 2.3 2.4 2 0 0 2 2 2 2 Sodium:solute symporter family Spc7 PF08317.11 ABA79342.1 - 0.019 13.9 1.1 0.028 13.3 1.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein HATPase_c_3 PF13589.6 ABA79342.1 - 0.031 14.1 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4220 PF13968.6 ABA79343.1 - 0.23 10.8 0.1 0.25 10.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4220) Response_reg PF00072.24 ABA79344.1 - 1.2e-26 93.0 0.1 1.4e-26 92.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HTH_3 PF01381.22 ABA79345.1 - 2.9e-12 46.4 0.8 5e-12 45.7 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 ABA79345.1 - 1.1e-11 44.6 0.4 1.7e-11 43.9 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 ABA79345.1 - 7.6e-11 42.2 7.7 7.6e-11 42.2 7.7 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain DUF2083 PF09856.9 ABA79345.1 - 1.4e-09 38.0 0.9 2.5e-08 33.9 0.9 2.2 1 1 0 1 1 1 1 Predicted transcriptional regulator (DUF2083) HTH_26 PF13443.6 ABA79345.1 - 6e-05 23.4 0.1 0.00012 22.4 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 ABA79345.1 - 0.012 15.4 2.1 0.039 13.8 2.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain FAA_hydrolase PF01557.18 ABA79346.1 - 1.8e-72 243.6 0.0 2.2e-72 243.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family FliMN_C PF01052.20 ABA79346.1 - 0.068 13.2 0.1 8.6 6.4 0.0 3.3 3 0 0 3 3 3 0 Type III flagellar switch regulator (C-ring) FliN C-term adh_short_C2 PF13561.6 ABA79347.1 - 1.7e-60 204.5 2.3 2e-60 204.3 2.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA79347.1 - 5e-43 146.8 0.3 6.5e-43 146.5 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA79347.1 - 2.8e-05 24.1 0.3 5e-05 23.3 0.3 1.5 1 1 0 1 1 1 1 KR domain AdoHcyase_NAD PF00670.21 ABA79347.1 - 0.0089 16.1 0.1 0.014 15.5 0.1 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_10 PF13460.6 ABA79347.1 - 0.055 13.4 0.1 0.08 12.8 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding Epimerase PF01370.21 ABA79347.1 - 0.063 12.7 0.0 0.11 11.9 0.0 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA79347.1 - 0.17 11.0 0.1 0.24 10.4 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 ABA79348.1 - 1.3e-44 151.7 0.0 1.7e-44 151.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA79348.1 - 4.1e-21 75.0 0.0 4.9e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 ABA79348.1 - 2.6e-05 24.5 0.0 4.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 ABA79348.1 - 0.061 13.9 0.2 0.13 12.9 0.2 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ILVD_EDD PF00920.21 ABA79349.1 - 4.5e-154 513.9 0.0 5.1e-154 513.7 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family Peptidase_C7 PF01830.18 ABA79349.1 - 0.16 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase C7 family FAD-oxidase_C PF02913.19 ABA79350.1 - 4.1e-61 206.8 0.5 6.6e-61 206.1 0.5 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 ABA79350.1 - 1.5e-35 121.9 1.8 1.5e-35 121.9 1.8 1.9 2 0 0 2 2 2 1 FAD binding domain NMT1 PF09084.11 ABA79351.1 - 1.8e-37 129.4 0.0 2.2e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 ABA79351.1 - 0.023 14.1 0.0 0.037 13.4 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 BPD_transp_1 PF00528.22 ABA79352.1 - 1.9e-19 70.1 13.7 1.9e-19 70.1 13.7 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Baculo_11_kDa PF06143.11 ABA79352.1 - 0.3 10.7 2.1 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 Baculovirus 11 kDa family STIMATE PF12400.8 ABA79352.1 - 0.34 11.4 2.6 0.27 11.8 0.5 1.9 2 0 0 2 2 2 0 STIMATE family BPD_transp_1 PF00528.22 ABA79353.2 - 2.4e-21 76.3 17.9 2.4e-21 76.3 17.9 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Amidohydro_1 PF01979.20 ABA79354.2 - 5.4e-29 101.6 0.0 9.3e-29 100.8 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 ABA79354.2 - 2.8e-12 46.9 3.3 4.8e-06 26.3 0.4 3.0 2 1 1 3 3 3 2 Amidohydrolase family Peptidase_M20 PF01546.28 ABA79355.1 - 5.6e-38 130.7 0.9 8.2e-38 130.2 0.9 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA79355.1 - 7.9e-06 25.8 0.0 1.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 ABA79355.1 - 0.0015 18.3 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 TetR_C_3 PF08362.11 ABA79356.1 - 2.4e-51 173.4 0.0 3.3e-51 173.0 0.0 1.2 1 0 0 1 1 1 1 YcdC-like protein, C-terminal region TetR_N PF00440.23 ABA79356.1 - 1.1e-14 54.0 0.3 2e-14 53.1 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 ABA79356.1 - 0.037 14.1 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain LD_cluster2 PF18163.1 ABA79356.1 - 0.16 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster2 TetR_C_3 PF08362.11 ABA79357.1 - 1.8e-47 160.8 0.0 2.4e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 YcdC-like protein, C-terminal region TetR_N PF00440.23 ABA79357.1 - 1.8e-15 56.5 0.1 2.8e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 ABA79357.1 - 0.012 15.7 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DHO_dh PF01180.21 ABA79358.1 - 3.6e-27 95.3 0.0 4.8e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4_21 PF14697.6 ABA79358.1 - 1.2e-23 82.9 16.8 2e-23 82.3 16.0 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 ABA79358.1 - 2.8e-09 36.4 16.9 0.0002 21.0 4.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 ABA79358.1 - 1.3e-07 31.4 21.5 3.7e-07 29.9 1.9 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Dus PF01207.17 ABA79358.1 - 1.5e-06 27.6 0.1 2.9e-06 26.6 0.0 1.5 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) Fer4_7 PF12838.7 ABA79358.1 - 2.4e-06 28.0 12.2 6.8e-06 26.6 12.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA79358.1 - 7.4e-06 25.8 13.8 0.015 15.4 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 ABA79358.1 - 8.9e-06 25.7 14.6 1.5e-05 25.0 13.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA79358.1 - 9.9e-06 25.6 11.9 2.5e-05 24.3 11.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 ABA79358.1 - 5.7e-05 23.9 4.5 0.059 14.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA79358.1 - 0.00015 22.0 16.3 0.0074 16.7 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 ABA79358.1 - 0.00032 21.2 5.9 0.25 11.9 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA79358.1 - 0.0058 17.1 12.6 0.038 14.4 11.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 ABA79358.1 - 0.007 16.9 13.9 0.21 12.1 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I NMO PF03060.15 ABA79358.1 - 0.026 13.9 0.2 2.6 7.3 0.3 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase Fer4_16 PF13484.6 ABA79358.1 - 0.055 14.4 14.5 0.71 10.9 4.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 ABA79358.1 - 0.47 10.7 16.5 0.044 14.0 4.7 2.6 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 ABA79358.1 - 0.57 11.0 14.2 11 6.8 15.4 2.4 2 1 0 2 2 1 0 4Fe-4S single cluster domain SNARE_assoc PF09335.11 ABA79359.1 - 7.4e-15 55.5 8.8 1.2e-14 54.8 8.8 1.3 1 0 0 1 1 1 1 SNARE associated Golgi protein Pyr_redox_2 PF07992.14 ABA79360.1 - 2.9e-35 121.9 3.6 3.7e-35 121.6 3.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 ABA79360.1 - 8.2e-34 115.8 2.4 1.2e-33 115.3 2.4 1.2 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 ABA79360.1 - 5.2e-15 55.8 1.3 3.1e-07 30.9 0.4 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA79360.1 - 6.6e-10 39.1 1.4 2e-09 37.5 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 ABA79360.1 - 2e-07 30.9 0.8 6.7e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 ABA79360.1 - 5.4e-07 29.1 2.8 0.0002 20.8 0.0 2.6 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 ABA79360.1 - 6.9e-07 28.8 0.2 0.034 13.4 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA79360.1 - 7.3e-07 28.6 7.0 9.2e-05 21.7 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 ABA79360.1 - 1.5e-05 23.9 0.1 1.5e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 ABA79360.1 - 2.9e-05 23.3 1.5 0.0025 16.9 0.1 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 ABA79360.1 - 5.2e-05 22.7 0.1 0.00013 21.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 ABA79360.1 - 6.5e-05 22.3 1.5 6.7e-05 22.3 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 ABA79360.1 - 0.00013 21.4 0.0 0.00029 20.3 0.0 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 ABA79360.1 - 0.00023 20.4 0.3 0.00085 18.5 0.0 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 ABA79360.1 - 0.00024 20.4 1.4 0.0011 18.2 0.0 2.4 3 0 0 3 3 2 1 Thi4 family FAD_oxidored PF12831.7 ABA79360.1 - 0.00036 20.0 13.5 0.00077 18.9 0.3 2.6 3 0 0 3 3 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 ABA79360.1 - 0.002 18.5 0.2 0.13 12.7 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 ABA79360.1 - 0.0049 16.9 0.1 0.018 15.0 0.0 2.0 2 0 0 2 2 1 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 ABA79360.1 - 0.0054 16.6 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_7 PF12838.7 ABA79360.1 - 0.0081 16.7 0.9 0.0081 16.7 0.9 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain XdhC_C PF13478.6 ABA79360.1 - 0.016 15.7 0.0 0.059 13.9 0.0 2.0 1 1 1 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 ABA79360.1 - 0.032 13.8 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4_9 PF13187.6 ABA79360.1 - 0.098 12.8 0.2 0.098 12.8 0.2 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain NAD_binding_2 PF03446.15 ABA79360.1 - 0.16 12.2 1.4 0.5 10.5 0.0 2.5 4 0 0 4 4 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.21 ABA79360.1 - 0.2 11.0 0.4 0.59 9.4 0.0 1.8 2 0 0 2 2 2 0 ThiF family Fer4_10 PF13237.6 ABA79360.1 - 3.4 7.8 10.5 20 5.4 10.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 ABA79360.1 - 4.6 7.5 8.0 2.4 8.4 1.4 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Biotin_lipoyl PF00364.22 ABA79361.2 - 7.2e-22 77.0 0.2 1.4e-21 76.1 0.2 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 ABA79361.2 - 4.2e-06 26.5 0.0 0.024 14.5 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 ABA79361.2 - 0.028 14.4 0.1 0.089 12.8 0.0 1.8 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 ABA79361.2 - 0.04 13.8 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 Glycine cleavage H-protein YqfD PF06898.11 ABA79361.2 - 0.12 11.1 0.1 0.52 9.1 0.2 1.8 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD HlyD_D23 PF16576.5 ABA79361.2 - 0.15 11.3 1.0 1.3 8.2 0.0 2.4 2 1 1 3 3 3 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Neisseria_TspB PF05616.13 ABA79361.2 - 0.44 9.0 1.8 0.53 8.7 1.8 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein CPSase_L_D2 PF02786.17 ABA79362.1 - 2.6e-77 259.1 0.0 3.8e-77 258.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 ABA79362.1 - 6.4e-46 155.4 0.3 1.5e-45 154.3 0.3 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 ABA79362.1 - 5.6e-34 116.5 0.0 1.3e-33 115.3 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 ABA79362.1 - 4.8e-09 36.0 0.0 1.5e-08 34.4 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 ABA79362.1 - 1.2e-08 34.7 0.1 2.8e-08 33.5 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 ABA79362.1 - 4.2e-07 30.1 0.0 9.5e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 ABA79362.1 - 0.0029 17.4 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.6 ABA79362.1 - 0.016 14.8 0.0 0.075 12.6 0.0 2.3 2 1 0 2 2 2 0 ATP-grasp domain RimK PF08443.11 ABA79362.1 - 0.016 14.8 0.0 0.1 12.2 0.0 2.0 1 1 0 1 1 1 0 RimK-like ATP-grasp domain Leu_Phe_trans PF03588.14 ABA79363.1 - 6.4e-64 214.5 0.0 7.6e-64 214.3 0.0 1.0 1 0 0 1 1 1 1 Leucyl/phenylalanyl-tRNA protein transferase Acetyltransf_6 PF13480.7 ABA79363.1 - 0.17 12.1 3.6 0.54 10.4 3.6 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2155 PF09923.9 ABA79364.1 - 4.4e-27 94.2 0.0 5.1e-27 93.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2155) TrbC PF04956.13 ABA79364.1 - 0.2 11.9 0.0 0.31 11.3 0.0 1.3 1 0 0 1 1 1 0 TrbC/VIRB2 family MlaD PF02470.20 ABA79365.1 - 1e-19 70.6 0.1 1.8e-19 69.8 0.1 1.4 1 0 0 1 1 1 1 MlaD protein NDUFA12 PF05071.16 ABA79366.1 - 2e-24 86.2 2.0 2.4e-24 86.0 2.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase subunit NDUFA12 AAA_2 PF07724.14 ABA79367.1 - 1.4e-48 165.2 0.0 2.4e-48 164.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) zf-C4_ClpX PF06689.13 ABA79367.1 - 2.5e-20 72.1 3.8 6.7e-20 70.7 3.8 1.8 1 0 0 1 1 1 1 ClpX C4-type zinc finger ClpB_D2-small PF10431.9 ABA79367.1 - 1.8e-17 63.2 0.1 2.1e-16 59.7 0.2 2.3 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 ABA79367.1 - 3.2e-17 63.2 0.0 9.9e-17 61.6 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA79367.1 - 2.7e-06 27.4 0.1 2.9e-05 24.1 0.2 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 ABA79367.1 - 6.8e-06 25.9 0.2 2e-05 24.4 0.2 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 ABA79367.1 - 8.4e-06 25.3 0.5 0.00029 20.3 0.6 2.8 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 ABA79367.1 - 2.1e-05 24.8 0.2 0.00031 21.0 0.2 2.5 1 1 0 1 1 1 1 AAA domain MCM PF00493.23 ABA79367.1 - 0.00014 21.1 0.1 0.00024 20.3 0.1 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 ABA79367.1 - 0.00071 20.0 0.0 0.0019 18.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 ABA79367.1 - 0.0023 17.7 0.0 0.039 13.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_7 PF12775.7 ABA79367.1 - 0.0023 17.5 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 ABA79367.1 - 0.005 16.6 0.0 0.0093 15.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 ABA79367.1 - 0.0051 16.9 0.0 0.013 15.6 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_14 PF13173.6 ABA79367.1 - 0.0054 16.8 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 ABA79367.1 - 0.006 17.1 0.0 0.015 15.8 0.0 1.7 2 0 0 2 2 1 1 ABC transporter Rad17 PF03215.15 ABA79367.1 - 0.0062 16.5 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain PduV-EutP PF10662.9 ABA79367.1 - 0.0062 16.3 0.2 0.02 14.6 0.0 1.9 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation TIP49 PF06068.13 ABA79367.1 - 0.0066 15.7 0.1 0.022 14.0 0.0 1.7 1 1 1 2 2 2 1 TIP49 P-loop domain RNA_helicase PF00910.22 ABA79367.1 - 0.011 16.1 0.0 0.027 14.9 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 ABA79367.1 - 0.013 16.0 0.0 0.04 14.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 ABA79367.1 - 0.014 15.4 0.0 0.027 14.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 ABA79367.1 - 0.016 15.1 0.0 0.06 13.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.6 ABA79367.1 - 0.022 14.5 0.1 0.35 10.5 0.1 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_3 PF07726.11 ABA79367.1 - 0.028 14.3 0.3 0.15 11.9 0.1 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 ABA79367.1 - 0.03 13.4 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Ta0938 PF11494.8 ABA79367.1 - 0.03 14.6 0.1 0.077 13.3 0.1 1.8 1 0 0 1 1 1 0 Ta0938 AAA_21 PF13304.6 ABA79367.1 - 0.041 13.7 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 ABA79367.1 - 0.042 13.2 0.3 1.1 8.5 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 ABA79367.1 - 0.047 14.2 0.0 0.12 12.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 ABA79367.1 - 0.075 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_28 PF13521.6 ABA79367.1 - 0.095 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 ABA79367.1 - 0.098 13.0 0.9 4.1 7.7 0.1 2.9 3 1 1 4 4 2 0 AAA domain AAA_24 PF13479.6 ABA79367.1 - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA79367.1 - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA79367.1 - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 ABA79367.1 - 0.13 12.0 1.0 2.1 8.1 0.1 2.7 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_29 PF13555.6 ABA79367.1 - 0.15 11.8 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_8 PF12780.7 ABA79367.1 - 0.17 11.2 0.0 0.37 10.1 0.0 1.5 2 0 0 2 2 1 0 P-loop containing dynein motor region D4 CLP_protease PF00574.23 ABA79368.1 - 5.4e-83 277.4 0.0 6.6e-83 277.1 0.0 1.1 1 0 0 1 1 1 1 Clp protease CortBP2 PF09727.9 ABA79368.1 - 0.045 13.7 0.1 0.063 13.2 0.1 1.2 1 0 0 1 1 1 0 Cortactin-binding protein-2 CDP-OH_P_transf PF01066.21 ABA79369.1 - 4.4e-10 40.2 4.1 4.4e-10 40.2 4.1 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase SBP_bac_8 PF13416.6 ABA79370.1 - 1.1e-22 81.2 0.1 1.5e-22 80.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA79370.1 - 5.8e-05 23.2 4.1 0.00019 21.5 4.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA79371.1 - 1.5e-06 28.0 11.5 1.5e-06 28.0 11.5 4.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA79372.1 - 1.7e-30 106.3 0.0 2e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79372.1 - 3.7e-06 27.0 0.4 0.069 13.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA79372.1 - 0.00018 22.0 1.4 0.00034 21.0 1.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA79372.1 - 0.00057 19.6 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA79372.1 - 0.0013 18.2 0.1 0.096 12.1 0.2 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 ABA79372.1 - 0.0074 16.5 0.0 0.018 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA79372.1 - 0.017 15.6 0.0 0.023 15.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA79372.1 - 0.02 15.2 0.1 0.072 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA79372.1 - 0.021 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 ABA79372.1 - 0.028 14.6 0.2 0.26 11.6 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 ABA79372.1 - 0.029 14.1 0.3 0.061 13.0 0.3 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 ABA79372.1 - 0.034 13.5 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 ABA79372.1 - 0.066 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 ABA79372.1 - 0.072 12.7 0.7 0.18 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 ABA79372.1 - 0.094 12.8 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain T2SSE PF00437.20 ABA79372.1 - 0.1 11.7 0.1 0.13 11.3 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 ABA79372.1 - 0.14 12.1 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 NTPase Rad17 PF03215.15 ABA79372.1 - 0.16 11.8 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 ABA79372.1 - 0.18 11.4 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 ABA79372.1 - 0.26 11.0 1.1 0.49 10.1 0.5 1.6 1 1 1 2 2 2 0 Cytidylate kinase CAP PF00188.26 ABA79373.1 - 3.7e-13 50.4 0.0 4.6e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Cysteine-rich secretory protein family HATPase_c PF02518.26 ABA79374.1 - 2.1e-15 57.2 0.0 5.1e-15 56.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA79374.1 - 5.4e-08 32.7 0.4 1.9e-07 31.0 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 ABA79374.1 - 4.5e-06 26.9 2.4 1e-05 25.8 0.2 2.8 3 0 0 3 3 3 1 HAMP domain HATPase_c_3 PF13589.6 ABA79374.1 - 0.00022 21.1 0.0 0.00037 20.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA79374.1 - 0.0039 17.2 0.8 0.0092 15.9 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Dynactin PF12455.8 ABA79374.1 - 0.023 13.9 0.1 0.036 13.3 0.1 1.2 1 0 0 1 1 1 0 Dynein associated protein DUF2244 PF10003.9 ABA79374.1 - 0.063 12.9 0.8 1.3 8.7 0.1 2.8 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) Lactamase_B PF00753.27 ABA79375.1 - 6.7e-18 65.4 3.4 7.9e-18 65.2 3.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 ABA79375.1 - 1.4e-10 41.0 0.0 2.7e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_2 PF12706.7 ABA79375.1 - 0.00026 20.6 0.1 0.00047 19.7 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 ABA79375.1 - 0.0085 16.0 0.0 0.017 15.0 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain NinG PF05766.12 ABA79377.1 - 1.5e-06 28.3 32.8 0.0012 18.9 1.8 4.7 1 1 4 5 5 5 3 Bacteriophage Lambda NinG protein DUF2116 PF09889.9 ABA79377.1 - 3.1e-05 23.9 25.9 0.33 10.9 0.9 5.2 4 1 1 5 5 5 5 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ecl1 PF12855.7 ABA79377.1 - 0.011 16.9 14.4 0.23 12.6 0.4 3.4 1 1 1 3 3 3 0 ECL1/2/3 zinc binding proteins zf-C2H2_12 PF18658.1 ABA79377.1 - 0.67 9.6 4.7 5.2 6.7 0.1 3.3 4 0 0 4 4 4 0 Zinc-finger C2H2-type YhfH PF14149.6 ABA79377.1 - 1.6 8.8 13.2 3.6 7.6 0.6 4.4 4 0 0 4 4 4 0 YhfH-like protein zf-RRN7 PF11781.8 ABA79377.1 - 3.9 7.3 10.6 0.19 11.4 1.1 3.3 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PLATZ PF04640.14 ABA79378.1 - 0.00056 20.5 0.3 0.00093 19.8 0.3 1.4 1 0 0 1 1 1 1 PLATZ transcription factor zf-MYND PF01753.18 ABA79378.1 - 0.025 14.6 1.5 0.044 13.9 1.5 1.3 1 0 0 1 1 1 0 MYND finger zinc_ribbon_2 PF13240.6 ABA79378.1 - 0.078 12.7 1.3 0.12 12.2 1.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF2116 PF09889.9 ABA79378.1 - 1.6 8.8 6.1 2.6 8.1 6.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Phage_portal PF04860.12 ABA79379.1 - 1.9e-10 40.5 0.0 2.9e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Phage portal protein Peptidase_S78 PF04586.17 ABA79380.1 - 2.9e-22 79.6 0.0 3.7e-22 79.2 0.0 1.0 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_capsid PF05065.13 ABA79381.2 - 4.7e-13 49.1 2.4 6.1e-13 48.7 1.3 1.8 2 1 0 2 2 2 1 Phage capsid family HNH PF01844.23 ABA79382.1 - 2.3e-10 40.5 0.8 3.9e-10 39.8 0.8 1.4 1 0 0 1 1 1 1 HNH endonuclease NinG PF05766.12 ABA79382.1 - 0.0086 16.0 0.2 0.011 15.6 0.2 1.1 1 0 0 1 1 1 1 Bacteriophage Lambda NinG protein HNH_2 PF13391.6 ABA79382.1 - 0.038 14.1 0.1 0.095 12.9 0.1 1.6 1 1 0 1 1 1 0 HNH endonuclease Zn-ribbon_8 PF09723.10 ABA79382.1 - 0.22 11.7 5.2 2.6 8.2 5.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Terminase_1 PF03354.15 ABA79383.2 - 4.9e-15 55.0 0.0 2.2e-07 29.8 0.0 2.1 2 0 0 2 2 2 2 Phage Terminase AT_hook PF02178.19 ABA79383.2 - 0.24 11.4 6.3 0.86 9.7 6.3 2.0 1 0 0 1 1 1 0 AT hook motif Phage_connect_1 PF05135.13 ABA79384.1 - 1.4e-09 38.4 0.0 1.4e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Phage gp6-like head-tail connector protein AAA_25 PF13481.6 ABA79385.1 - 9.6e-38 129.7 0.8 1.6e-36 125.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain NAT PF04768.13 ABA79387.2 - 0.06 13.0 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase DUF1560 PF07597.11 ABA79387.2 - 0.1 12.6 0.2 2.2 8.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1560) Arm-DNA-bind_3 PF13356.6 ABA79388.1 - 9.1e-18 64.4 1.3 1.6e-16 60.4 0.1 2.6 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_integrase PF00589.22 ABA79388.1 - 4.5e-15 55.9 0.0 6.7e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family DUF4350 PF14258.6 ABA79388.1 - 0.067 13.6 0.0 0.22 12.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) MCPsignal PF00015.21 ABA79389.1 - 1.6e-25 89.9 33.6 9.3e-24 84.1 19.8 3.8 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 ABA79389.1 - 2.9e-11 43.6 0.0 3.4e-10 40.1 0.0 2.5 2 1 0 2 2 2 1 Cache domain VWA_2 PF13519.6 ABA79391.1 - 0.03 15.0 0.0 0.037 14.7 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain TerB_N PF13208.6 ABA79393.2 - 1.6e-64 217.5 0.0 3.4e-64 216.4 0.0 1.6 1 0 0 1 1 1 1 TerB N-terminal domain TerB_C PF15615.6 ABA79393.2 - 8e-24 84.7 3.9 8.5e-24 84.6 0.5 2.6 2 1 0 2 2 2 1 TerB-C domain TerB PF05099.13 ABA79393.2 - 4.4e-10 39.7 3.4 6.5e-10 39.1 1.9 2.0 2 0 0 2 2 2 1 Tellurite resistance protein TerB DUF533 PF04391.12 ABA79393.2 - 2.2e-08 33.9 4.1 0.0024 17.5 0.4 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF533) Arg_decarbox_C PF17944.1 ABA79393.2 - 0.21 12.2 0.5 1.6 9.4 0.7 2.5 2 1 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension DUF2791 PF10923.8 ABA79394.2 - 1.8e-158 527.8 0.0 2.1e-158 527.6 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.6 ABA79394.2 - 0.00016 22.1 1.0 0.00064 20.1 0.1 2.3 2 2 1 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 ABA79394.2 - 0.01 15.6 0.0 0.022 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA79394.2 - 0.024 14.9 0.0 1.4 9.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.9 ABA79394.2 - 0.046 12.9 0.0 0.076 12.2 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATPase_2 PF01637.18 ABA79394.2 - 0.091 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DEAD PF00270.29 ABA79395.1 - 3.7e-25 88.7 0.0 8.5e-25 87.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 ABA79395.1 - 1e-12 48.3 0.0 7.6e-12 45.6 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain EF-hand_6 PF13405.6 ABA79396.2 - 4.9e-14 51.0 2.5 0.001 18.8 0.0 4.2 4 0 0 4 4 4 4 EF-hand domain EF-hand_5 PF13202.6 ABA79396.2 - 9.2e-14 50.2 10.9 0.0002 20.7 0.3 4.2 4 0 0 4 4 4 4 EF hand EF-hand_1 PF00036.32 ABA79396.2 - 1.4e-13 49.4 6.4 0.0024 17.3 0.1 4.3 4 0 0 4 4 4 4 EF hand EF-hand_7 PF13499.6 ABA79396.2 - 5.3e-10 39.6 2.0 0.045 14.2 0.0 4.0 3 1 1 4 4 4 2 EF-hand domain pair EF-hand_8 PF13833.6 ABA79396.2 - 2.3e-08 33.7 7.9 0.018 14.9 0.1 4.2 4 0 0 4 4 4 3 EF-hand domain pair Dockerin_1 PF00404.18 ABA79396.2 - 0.11 12.7 4.9 12 6.2 0.0 3.6 2 1 2 4 4 4 0 Dockerin type I domain Excalibur PF05901.11 ABA79396.2 - 0.37 11.4 12.0 1.7 9.3 0.3 4.1 4 0 0 4 4 4 0 Excalibur calcium-binding domain Chal_sti_synt_N PF00195.19 ABA79397.1 - 8.5e-20 71.1 0.9 3.1e-19 69.3 0.9 1.8 1 1 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain FAE1_CUT1_RppA PF08392.12 ABA79397.1 - 3.4e-16 59.4 0.0 5.5e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein Chal_sti_synt_C PF02797.15 ABA79397.1 - 6.7e-14 52.1 0.0 1.4e-13 51.1 0.0 1.5 1 1 0 1 1 1 1 Chalcone and stilbene synthases, C-terminal domain ACP_syn_III PF08545.10 ABA79397.1 - 2.8e-06 27.1 1.6 6.6e-06 25.9 1.6 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 ABA79397.1 - 1.2e-05 25.4 0.0 5.3e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ICMT PF04140.14 ABA79398.1 - 5.6e-23 81.2 0.2 9.1e-23 80.5 0.2 1.3 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 ABA79398.1 - 5.7e-06 26.7 0.1 1.2e-05 25.7 0.1 1.5 1 0 0 1 1 1 1 Phospholipid methyltransferase MFS_1 PF07690.16 ABA79399.1 - 8.3e-41 140.1 44.4 8.3e-41 140.1 44.4 1.8 2 1 0 2 2 2 1 Major Facilitator Superfamily HemS PF05171.12 ABA79400.1 - 5.5e-51 171.8 0.0 9e-32 109.7 0.0 2.1 2 0 0 2 2 2 2 Haemin-degrading HemS.ChuX domain ChuX_HutX PF06228.13 ABA79400.1 - 3.6e-34 117.4 0.0 3.3e-24 85.2 0.0 2.1 2 0 0 2 2 2 2 Haem utilisation ChuX/HutX FlgD_ig PF13860.6 ABA79400.1 - 0.0058 16.5 0.0 0.73 9.7 0.0 2.3 2 0 0 2 2 2 2 FlgD Ig-like domain Peptidase_M10_C PF08548.11 ABA79401.1 - 2.3e-25 89.6 4.5 1.2e-23 84.0 3.5 2.8 2 1 0 2 2 2 1 Peptidase M10 serralysin C terminal HemolysinCabind PF00353.19 ABA79401.1 - 3.9e-08 33.1 30.8 1.8e-06 27.8 14.0 3.9 4 0 0 4 4 4 2 RTX calcium-binding nonapeptide repeat (4 copies) Peptidase_M10 PF00413.24 ABA79401.1 - 1.6e-05 24.8 0.7 0.00031 20.6 0.7 2.4 1 1 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.6 ABA79401.1 - 4.3e-05 23.2 0.2 8.6e-05 22.3 0.2 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 ABA79401.1 - 5.2e-05 22.3 0.1 8.1e-05 21.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF4953 PF16313.5 ABA79401.1 - 0.0009 18.5 0.1 0.0015 17.8 0.1 1.3 1 0 0 1 1 1 1 Met-zincin Reprolysin_3 PF13582.6 ABA79401.1 - 0.0019 18.7 0.1 0.0042 17.6 0.1 1.6 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 ABA79401.1 - 0.0021 18.3 0.1 0.0038 17.4 0.1 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M57 PF12388.8 ABA79401.1 - 0.011 15.4 0.1 0.022 14.4 0.1 1.4 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Metallopep PF12044.8 ABA79401.1 - 0.046 12.3 0.1 0.068 11.8 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Astacin PF01400.24 ABA79401.1 - 0.076 12.6 0.0 0.24 11.0 0.0 1.7 1 1 0 1 1 1 0 Astacin (Peptidase family M12A) OmpA PF00691.20 ABA79403.1 - 3.1e-18 65.9 0.2 1.6e-17 63.7 0.0 2.1 2 0 0 2 2 2 1 OmpA family MotB_plug PF13677.6 ABA79403.1 - 4.8e-13 48.5 0.0 1e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB BON PF04972.17 ABA79403.1 - 0.074 13.4 7.8 0.59 10.5 0.6 3.4 3 1 0 3 3 3 0 BON domain MotA_ExbB PF01618.16 ABA79404.1 - 5.1e-25 87.7 3.8 1.2e-24 86.5 0.0 2.4 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family MCPsignal PF00015.21 ABA79405.1 - 2.4e-28 99.1 21.5 1.2e-22 80.5 11.8 3.2 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 ABA79405.1 - 4.4e-28 98.2 0.4 7.7e-28 97.4 0.0 1.6 2 0 0 2 2 2 1 Protoglobin DUF1180 PF06679.12 ABA79406.1 - 0.15 12.5 1.0 0.15 12.4 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Mob_synth_C PF06463.13 ABA79407.1 - 3.7e-39 133.6 0.0 5.1e-39 133.1 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 ABA79407.1 - 1.8e-27 96.7 0.1 3.5e-27 95.8 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 ABA79407.1 - 5.5e-08 33.2 0.0 1e-07 32.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 ABA79407.1 - 5.8e-05 23.2 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAO PF01266.24 ABA79408.1 - 1.8e-68 231.7 6.3 2.5e-68 231.2 6.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 ABA79408.1 - 2.2e-10 40.2 3.9 2.9e-10 39.8 3.9 1.1 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 ABA79408.1 - 1.6e-07 30.4 0.2 0.0016 17.3 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 ABA79408.1 - 1.2e-05 25.5 0.2 3.2e-05 24.1 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA79408.1 - 1.2e-05 24.7 0.2 0.00033 20.0 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 ABA79408.1 - 4.5e-05 22.9 0.1 0.00031 20.1 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 ABA79408.1 - 8.4e-05 23.1 0.6 0.0026 18.3 1.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA79408.1 - 0.00021 20.7 0.0 0.092 12.0 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA79408.1 - 0.00051 19.5 0.6 0.0047 16.3 0.6 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 ABA79408.1 - 0.0028 16.8 0.2 0.15 11.1 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 ABA79408.1 - 0.0043 16.3 0.2 0.011 15.0 0.1 1.6 2 0 0 2 2 2 1 Thi4 family ApbA PF02558.16 ABA79408.1 - 0.0052 16.4 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 ABA79408.1 - 0.019 14.6 0.8 0.028 14.0 0.8 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 ABA79408.1 - 0.058 12.2 1.7 1.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 ABA79408.1 - 0.097 12.6 0.3 0.16 11.8 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 ABA79408.1 - 0.18 11.1 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_M20 PF01546.28 ABA79409.1 - 6.7e-37 127.2 0.6 1.1e-36 126.5 0.6 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA79409.1 - 3.6e-18 65.5 0.2 5.7e-18 64.8 0.2 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF3422 PF11902.8 ABA79410.1 - 2.4e-155 517.8 2.3 2.8e-155 517.6 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3422) PNTB PF02233.16 ABA79411.1 - 1e-189 631.3 23.2 1.3e-189 631.0 23.2 1.1 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit AlaDh_PNT_C PF01262.21 ABA79412.1 - 7.7e-72 241.1 0.2 7.7e-72 241.1 0.2 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 ABA79412.1 - 3.7e-49 166.5 0.8 9.3e-49 165.2 0.2 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, N-terminal domain PNTB_4TM PF12769.7 ABA79412.1 - 1.1e-32 112.3 10.7 1.1e-32 112.3 10.7 2.0 2 0 0 2 2 2 1 4TM region of pyridine nucleotide transhydrogenase, mitoch 2-Hacid_dh_C PF02826.19 ABA79412.1 - 0.00014 21.3 0.0 0.11 11.8 0.0 2.8 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 ABA79412.1 - 0.0027 17.7 1.4 0.16 12.0 0.1 3.1 3 0 0 3 3 3 1 Zinc-binding dehydrogenase Sacchrp_dh_NADP PF03435.18 ABA79412.1 - 0.015 15.6 0.0 0.19 12.0 0.0 2.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 ABA79412.1 - 0.053 12.7 0.4 0.12 11.5 0.4 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 ABA79412.1 - 0.16 12.0 0.2 4.6 7.3 0.0 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase PEMT PF04191.13 ABA79413.2 - 6.7e-10 39.3 0.4 9e-10 38.9 0.0 1.4 2 0 0 2 2 2 1 Phospholipid methyltransferase ERG4_ERG24 PF01222.17 ABA79413.2 - 0.00038 19.3 0.0 0.00052 18.9 0.0 1.1 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family ICMT PF04140.14 ABA79413.2 - 0.00039 20.8 0.0 0.00069 20.0 0.0 1.4 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.12 ABA79413.2 - 0.054 13.0 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1295) Aminotran_5 PF00266.19 ABA79414.1 - 5.1e-18 65.2 0.0 6.3e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 ABA79414.1 - 0.022 14.1 0.9 0.034 13.5 0.9 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.16 ABA79414.1 - 0.052 12.4 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 ABA79414.1 - 0.23 10.0 0.0 0.32 9.5 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme YkuD PF03734.14 ABA79415.1 - 3.2e-17 63.3 0.2 4.7e-17 62.7 0.2 1.2 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain Peptidase_C26 PF07722.13 ABA79416.1 - 2.4e-59 200.7 0.0 2.7e-59 200.5 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 ABA79416.1 - 8.9e-09 35.4 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Aminotran_5 PF00266.19 ABA79417.1 - 1.8e-27 96.3 0.0 3e-27 95.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Tyrosinase PF00264.20 ABA79417.1 - 0.024 14.9 0.2 0.045 14.0 0.2 1.4 1 0 0 1 1 1 0 Common central domain of tyrosinase ABC_membrane PF00664.23 ABA79418.1 - 2.3e-39 135.7 1.6 2.9e-39 135.4 1.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 ABA79418.1 - 8.4e-32 110.5 0.0 1.3e-31 109.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA79418.1 - 6.1e-10 38.9 0.0 1.8e-08 34.1 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA79418.1 - 1.1e-05 25.9 0.6 2.1e-05 25.0 0.6 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA79418.1 - 0.0012 18.5 0.0 0.0035 17.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 ABA79418.1 - 0.0015 17.4 0.1 0.0069 15.2 0.0 2.1 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_30 PF13604.6 ABA79418.1 - 0.0027 17.4 0.7 0.01 15.5 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA79418.1 - 0.0034 17.7 0.2 0.036 14.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA79418.1 - 0.01 15.8 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_21 PF13304.6 ABA79418.1 - 0.016 15.0 0.5 0.14 11.9 0.1 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 ABA79418.1 - 0.17 12.4 0.1 0.28 11.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 ABA79418.1 - 0.21 11.5 0.0 0.36 10.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain GCV_T PF01571.21 ABA79419.1 - 3.7e-05 23.2 0.0 5.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain EFP_N PF08207.12 ABA79420.1 - 5.4e-23 80.8 0.4 1e-22 79.9 0.1 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain Elong-fact-P_C PF09285.11 ABA79420.1 - 8.6e-21 73.5 0.0 1.7e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP PF01132.20 ABA79420.1 - 5.9e-17 61.4 0.1 9.5e-17 60.8 0.1 1.3 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain Polysacc_deac_3 PF15421.6 ABA79420.1 - 0.071 11.6 0.0 0.098 11.1 0.0 1.1 1 0 0 1 1 1 0 Putative polysaccharide deacetylase OEP PF02321.18 ABA79423.1 - 4.5e-44 150.5 39.3 8.8e-24 84.3 16.4 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein PCMT PF01135.19 ABA79424.1 - 1.4e-34 119.7 0.0 1.9e-34 119.3 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 ABA79424.1 - 1.6e-07 31.9 0.1 2.5e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79424.1 - 1.2e-06 28.4 0.0 1.6e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 ABA79424.1 - 3e-06 26.5 0.0 4.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 ABA79424.1 - 5.5e-05 23.7 0.1 0.00014 22.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79424.1 - 0.00011 22.1 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA79424.1 - 0.00012 21.7 0.1 0.00019 21.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 ABA79424.1 - 0.0012 19.5 0.0 0.0018 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 ABA79424.1 - 0.0039 16.5 0.0 0.0048 16.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 ABA79424.1 - 0.03 13.7 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 ABA79424.1 - 0.035 13.7 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase GHMP_kinases_N PF00288.26 ABA79424.1 - 0.097 12.9 0.6 0.17 12.1 0.6 1.3 1 0 0 1 1 1 0 GHMP kinases N terminal domain PrmA PF06325.13 ABA79424.1 - 0.11 11.9 0.2 0.13 11.6 0.2 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 ABA79424.1 - 0.11 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DAO PF01266.24 ABA79425.1 - 1.5e-46 159.6 12.7 1.5e-46 159.6 12.7 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 ABA79425.1 - 3.6e-06 26.4 0.2 6.9e-06 25.5 0.2 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 ABA79425.1 - 0.00052 19.4 0.5 0.037 13.3 0.0 2.4 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 ABA79425.1 - 0.0006 20.0 0.2 0.0014 18.8 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA79425.1 - 0.0024 17.2 0.3 0.026 13.8 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA79425.1 - 0.015 14.0 0.0 1.1 7.9 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein DUF5372 PF17342.2 ABA79425.1 - 0.039 14.4 0.0 0.29 11.6 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5372) FAD_binding_2 PF00890.24 ABA79425.1 - 0.079 12.0 9.0 0.026 13.6 5.7 1.8 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.6 ABA79425.1 - 0.088 12.0 0.0 4.6 6.4 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 ABA79425.1 - 0.1 11.4 0.1 0.28 10.0 0.0 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.27 ABA79425.1 - 0.14 12.7 0.1 3.7 8.2 0.0 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 ABA79425.1 - 0.16 11.5 0.0 0.38 10.3 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DXP_synthase_N PF13292.6 ABA79426.1 - 2.5e-112 374.6 0.0 4e-112 373.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 ABA79426.1 - 4.4e-39 134.0 0.4 4.4e-39 134.0 0.4 2.4 3 0 0 3 3 3 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 ABA79426.1 - 5.9e-31 106.9 0.0 1.1e-30 106.0 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transketolase_N PF00456.21 ABA79426.1 - 8.9e-08 31.5 0.1 0.033 13.2 0.0 3.0 3 0 0 3 3 3 2 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 ABA79426.1 - 1.3e-05 25.0 0.1 0.0008 19.2 0.1 2.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 ABA79426.1 - 0.0019 17.2 0.0 0.36 9.7 0.0 2.3 2 0 0 2 2 2 2 Dehydrogenase E1 component PFOR_II PF17147.4 ABA79426.1 - 0.049 13.9 0.0 0.2 12.0 0.0 2.1 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II RhodobacterPufX PF11511.8 ABA79427.1 - 1.1e-33 114.6 0.2 1.2e-33 114.5 0.2 1.0 1 0 0 1 1 1 1 Intrinsic membrane protein PufX Photo_RC PF00124.19 ABA79428.1 - 1e-95 319.9 26.4 1.2e-95 319.7 26.4 1.0 1 0 0 1 1 1 1 Photosynthetic reaction centre protein Photo_RC PF00124.19 ABA79429.1 - 1.1e-94 316.5 22.9 1.3e-94 316.3 22.9 1.0 1 0 0 1 1 1 1 Photosynthetic reaction centre protein LHC PF00556.20 ABA79430.1 - 6.1e-16 58.3 1.8 7.7e-16 58.0 1.8 1.1 1 0 0 1 1 1 1 Antenna complex alpha/beta subunit LHC PF00556.20 ABA79431.1 - 2.2e-12 47.0 1.3 2.5e-12 46.8 1.3 1.1 1 0 0 1 1 1 1 Antenna complex alpha/beta subunit PufQ PF05398.11 ABA79433.1 - 9.6e-38 128.2 2.1 1.1e-37 128.0 2.1 1.0 1 0 0 1 1 1 1 PufQ cytochrome subunit Oxidored_nitro PF00148.19 ABA79434.1 - 8.8e-37 126.8 0.0 6.9e-36 123.8 0.0 2.2 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase PCP_red PF08369.10 ABA79434.1 - 1.2e-09 38.2 4.5 3.5e-09 36.7 4.5 1.9 1 0 0 1 1 1 1 Proto-chlorophyllide reductase 57 kD subunit Oxidored_nitro PF00148.19 ABA79435.1 - 5.8e-47 160.3 0.0 7.8e-47 159.9 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 ABA79436.1 - 4.5e-96 321.4 0.0 5.8e-96 321.1 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 ABA79436.1 - 1.2e-14 54.5 0.0 1.7e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 ABA79436.1 - 3.2e-09 36.9 0.5 8.2e-09 35.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 ABA79436.1 - 4.6e-08 33.1 0.0 2.2e-07 30.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 ABA79436.1 - 2.4e-06 27.2 0.0 0.00038 20.0 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 ABA79436.1 - 1.3e-05 24.6 0.1 1.7e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase MeaB PF03308.16 ABA79436.1 - 0.00021 20.4 0.1 0.00052 19.1 0.1 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 ABA79436.1 - 0.0027 17.5 0.1 0.0054 16.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 ABA79436.1 - 0.0035 17.0 0.4 0.025 14.2 0.1 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_10 PF12846.7 ABA79436.1 - 0.0047 15.9 0.0 0.0089 15.0 0.0 1.4 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.6 ABA79436.1 - 0.046 13.3 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA79436.1 - 0.067 13.5 0.1 0.17 12.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 ABA79436.1 - 0.28 10.3 0.1 0.49 9.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain ADH_N PF08240.12 ABA79437.1 - 8.2e-06 25.7 0.0 2.5e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA79437.1 - 0.00045 20.2 0.0 0.00075 19.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 ABA79437.1 - 0.085 12.3 0.2 3.2 7.2 0.2 2.8 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus Corona_I PF03187.14 ABA79437.1 - 0.23 11.1 0.6 6.4 6.4 0.2 2.2 2 0 0 2 2 2 0 Corona nucleocapsid I protein Methyltransf_2 PF00891.18 ABA79438.1 - 3.5e-68 229.0 0.0 4.4e-68 228.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 ABA79438.1 - 9.6e-11 41.5 0.4 2.6e-10 40.2 0.4 1.7 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_19 PF04672.12 ABA79438.1 - 4.4e-05 23.1 0.0 0.00052 19.6 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl methyltransferase Methyltransf_23 PF13489.6 ABA79438.1 - 0.00056 19.8 0.0 0.0009 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA79438.1 - 0.0022 18.6 0.0 0.0085 16.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MarR_2 PF12802.7 ABA79438.1 - 0.013 15.4 1.1 0.013 15.4 1.1 2.2 2 0 0 2 2 2 0 MarR family Methyltransf_12 PF08242.12 ABA79438.1 - 0.021 15.6 0.0 0.055 14.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79438.1 - 0.063 13.9 0.0 0.22 12.2 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain HTH_5 PF01022.20 ABA79438.1 - 0.068 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_9 PF08221.11 ABA79438.1 - 0.11 12.6 0.0 6.3 7.0 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Methyltransf_24 PF13578.6 ABA79438.1 - 0.16 13.0 0.1 0.7 10.9 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain polyprenyl_synt PF00348.17 ABA79439.2 - 9.9e-46 155.9 0.0 1.2e-45 155.6 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase GspH PF12019.8 ABA79439.2 - 0.057 13.8 0.2 0.057 13.8 0.2 1.8 2 0 0 2 2 2 0 Type II transport protein GspH Amino_oxidase PF01593.24 ABA79440.1 - 1.2e-26 94.1 0.5 4e-26 92.3 0.5 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 ABA79440.1 - 2.3e-16 60.3 6.0 1.6e-14 54.3 6.0 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA79440.1 - 4.1e-12 46.1 0.1 2.3e-11 43.7 0.1 2.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA79440.1 - 2.6e-10 40.0 0.2 2.1e-08 33.8 0.1 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA79440.1 - 1.4e-07 31.3 0.1 1.5e-06 27.8 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 ABA79440.1 - 2.6e-07 30.1 5.4 2.9e-05 23.4 2.2 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 ABA79440.1 - 1.2e-06 27.5 0.0 0.0002 20.2 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 ABA79440.1 - 1.6e-06 28.5 0.1 0.00048 20.6 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 ABA79440.1 - 6.4e-06 25.5 0.3 1.1e-05 24.7 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 ABA79440.1 - 1.5e-05 24.0 0.2 0.13 11.1 0.3 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 ABA79440.1 - 0.00017 20.9 0.2 0.00033 20.0 0.2 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 ABA79440.1 - 0.001 18.4 0.9 0.0016 17.7 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 ABA79440.1 - 0.0091 15.1 0.6 0.05 12.7 0.6 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 ABA79440.1 - 0.011 15.8 0.8 1.7 8.6 0.4 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 ABA79440.1 - 0.019 14.8 0.5 0.03 14.2 0.5 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 ABA79440.1 - 0.037 13.3 0.4 0.058 12.7 0.4 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 ABA79440.1 - 0.041 13.5 0.1 0.13 11.8 0.5 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 ABA79440.1 - 0.092 12.0 0.1 0.14 11.3 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TspO_MBR PF03073.15 ABA79442.2 - 5.9e-37 126.7 23.7 6.8e-37 126.5 23.7 1.1 1 0 0 1 1 1 1 TspO/MBR family SQS_PSY PF00494.19 ABA79443.1 - 9.6e-67 225.2 8.2 1.5e-66 224.6 8.2 1.2 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF1876 PF08962.11 ABA79443.1 - 0.051 13.5 0.4 0.36 10.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1876) Amino_oxidase PF01593.24 ABA79444.1 - 8.2e-27 94.6 0.3 6.6e-26 91.6 0.3 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 ABA79444.1 - 2.6e-15 56.4 0.8 2.3e-14 53.4 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 ABA79444.1 - 2.2e-07 30.3 5.1 2.8e-05 23.4 1.2 2.5 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 ABA79444.1 - 3.1e-07 30.3 3.0 0.00062 19.5 0.0 2.9 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA79444.1 - 4.9e-06 26.0 0.3 0.00046 19.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA79444.1 - 0.00057 20.4 0.7 0.23 12.0 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Ribosomal_L12_N PF16320.5 ABA79444.1 - 0.0017 18.1 0.4 0.0042 16.8 0.4 1.6 1 0 0 1 1 1 1 Ribosomal protein L7/L12 dimerisation domain FAD_binding_3 PF01494.19 ABA79444.1 - 0.0019 17.5 1.7 0.0028 17.0 0.9 1.6 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 ABA79444.1 - 0.0019 16.9 0.4 0.043 12.5 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 ABA79444.1 - 0.0044 16.4 0.2 0.0044 16.4 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GDI PF00996.18 ABA79444.1 - 0.0085 14.7 0.1 0.044 12.3 0.0 1.8 2 0 0 2 2 2 1 GDP dissociation inhibitor GIDA PF01134.22 ABA79444.1 - 0.011 14.8 0.4 0.78 8.8 0.3 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A MCRA PF06100.11 ABA79444.1 - 0.014 14.2 0.0 0.19 10.4 0.0 2.2 2 0 0 2 2 2 0 MCRA family AAA_lid_2 PF17863.1 ABA79446.1 - 9.1e-18 63.9 3.9 9.1e-18 63.9 3.9 2.0 2 0 0 2 2 2 1 AAA lid domain Mg_chelatase PF01078.21 ABA79446.1 - 2.1e-15 56.7 0.2 4.8e-08 32.6 0.0 2.6 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 ABA79446.1 - 9.7e-10 38.6 0.0 7.2e-06 26.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 ABA79446.1 - 2.3e-05 23.6 0.0 0.0032 16.6 0.0 2.7 2 1 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 ABA79446.1 - 6.2e-05 22.8 0.1 0.033 13.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.6 ABA79446.1 - 0.00032 21.1 0.7 0.00076 19.9 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 ABA79446.1 - 0.00074 19.8 0.1 0.012 15.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 ABA79446.1 - 0.0013 19.2 0.0 0.013 15.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 ABA79446.1 - 0.004 16.9 0.2 0.0083 15.8 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF815 PF05673.13 ABA79446.1 - 0.0042 16.3 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 ABA79446.1 - 0.013 14.9 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_32 PF13654.6 ABA79446.1 - 0.034 12.9 0.0 1.5 7.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA79446.1 - 0.18 12.4 0.0 0.35 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_lid_2 PF17863.1 ABA79447.2 - 1.9e-16 59.6 6.4 9.8e-16 57.4 6.4 2.4 1 0 0 1 1 1 1 AAA lid domain VWA PF00092.28 ABA79447.2 - 2.3e-05 24.7 0.0 3.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain Abhydrolase_6 PF12697.7 ABA79448.1 - 7.1e-26 92.2 13.9 7.1e-26 92.2 13.9 1.3 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA79448.1 - 5.3e-24 85.3 0.0 1.2e-22 80.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA79448.1 - 6.4e-15 55.1 0.0 9.8e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 ABA79448.1 - 1.9e-09 38.0 0.1 2.8e-09 37.5 0.1 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_2 PF02230.16 ABA79448.1 - 0.0058 16.5 0.0 1.5 8.6 0.0 2.4 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase Glyco_trans_4_4 PF13579.6 ABA79448.1 - 0.0074 16.7 8.1 0.015 15.7 7.2 2.1 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Abhydrolase_4 PF08386.10 ABA79448.1 - 0.016 15.3 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein BAAT_C PF08840.11 ABA79448.1 - 0.045 13.7 0.0 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal NUDIX PF00293.28 ABA79449.1 - 3.5e-22 78.8 1.1 4.7e-22 78.4 1.1 1.2 1 0 0 1 1 1 1 NUDIX domain FAD_binding_3 PF01494.19 ABA79450.1 - 9.4e-17 61.3 2.4 5.8e-06 25.8 0.2 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 ABA79450.1 - 3e-09 36.4 0.5 0.00031 19.9 0.3 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 ABA79450.1 - 3.4e-09 36.7 1.2 0.00046 19.9 0.5 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 ABA79450.1 - 5e-08 32.2 1.2 0.095 11.5 0.1 3.0 2 1 0 3 3 3 3 Tryptophan halogenase Pyr_redox_2 PF07992.14 ABA79450.1 - 1e-06 28.2 0.0 1.6e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA79450.1 - 3.3e-06 26.7 0.4 7.1e-06 25.6 0.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA79450.1 - 3.7e-06 27.1 0.3 1.1e-05 25.5 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 ABA79450.1 - 8.7e-05 21.4 0.1 0.00012 20.9 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 ABA79450.1 - 0.00048 19.3 0.4 0.0017 17.5 0.4 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 ABA79450.1 - 0.00063 20.3 0.0 0.0016 18.9 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA79450.1 - 0.00067 19.0 0.1 0.0023 17.3 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA79450.1 - 0.00087 18.5 1.0 0.00087 18.5 1.0 1.6 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 ABA79450.1 - 0.0018 17.6 0.2 0.0028 16.9 0.2 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 ABA79450.1 - 0.0027 17.7 1.3 0.06 13.3 1.3 2.5 1 1 0 1 1 1 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 ABA79450.1 - 0.14 12.6 0.1 1.6 9.2 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding PUCC PF03209.15 ABA79451.1 - 2.9e-130 434.9 40.7 3.7e-130 434.5 40.7 1.0 1 0 0 1 1 1 1 PUCC protein MFS_1 PF07690.16 ABA79451.1 - 2.1e-12 46.6 45.3 2.1e-12 46.6 45.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily UbiA PF01040.18 ABA79452.1 - 1.3e-35 122.9 19.2 1.3e-35 122.9 19.2 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Pam17 PF08566.10 ABA79452.1 - 0.32 10.8 0.9 0.76 9.6 0.9 1.6 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 V4R PF02830.18 ABA79453.1 - 1.6e-18 66.5 0.3 2.4e-18 65.9 0.3 1.3 1 0 0 1 1 1 1 V4R domain Radical_SAM PF04055.21 ABA79454.1 - 5.6e-21 75.6 1.0 2.4e-20 73.6 0.4 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 ABA79454.1 - 1.5e-20 73.5 0.1 3.8e-20 72.1 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain Fer4_12 PF13353.6 ABA79454.1 - 5.5e-05 23.5 0.0 0.00013 22.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 ABA79454.1 - 0.045 13.9 0.1 0.12 12.5 0.1 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF4674 PF15719.5 ABA79454.1 - 0.18 11.8 0.1 0.3 11.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4674) HTH_8 PF02954.19 ABA79455.1 - 4.2e-12 45.7 0.1 1e-11 44.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family PAS_9 PF13426.7 ABA79455.1 - 1.6e-11 44.4 0.0 2.6e-06 27.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 ABA79455.1 - 5.7e-09 36.0 0.1 0.0004 20.3 0.0 3.4 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 ABA79455.1 - 5.6e-08 32.6 0.3 0.00036 20.5 0.1 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 ABA79455.1 - 1.7e-07 31.5 0.7 0.067 13.4 0.1 3.5 3 0 0 3 3 3 2 PAS fold B12-binding PF02310.19 ABA79456.1 - 1.1e-06 28.7 0.1 1.9e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain BCHF PF07284.11 ABA79457.1 - 7.2e-62 207.5 6.9 8.3e-62 207.3 6.9 1.0 1 0 0 1 1 1 1 2-vinyl bacteriochlorophyllide hydratase (BCHF) Oxidored_nitro PF00148.19 ABA79458.1 - 8.2e-28 97.2 0.0 9.4e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 ABA79459.1 - 2e-87 293.5 0.0 2.3e-87 293.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase PCP_red PF08369.10 ABA79459.1 - 3.3e-19 68.8 0.5 7.2e-19 67.7 0.5 1.6 1 0 0 1 1 1 1 Proto-chlorophyllide reductase 57 kD subunit CobN-Mg_chel PF02514.16 ABA79460.1 - 6e-292 971.3 0.0 9.8e-148 493.8 0.0 2.0 1 1 1 2 2 2 2 CobN/Magnesium Chelatase DUF3479 PF11965.8 ABA79460.1 - 4.4e-47 160.2 0.0 7.4e-47 159.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3479) DUF4777 PF16007.5 ABA79460.1 - 0.00017 21.8 0.0 0.00043 20.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4777) Fer4_NifH PF00142.18 ABA79461.1 - 1.2e-85 287.2 0.0 1.5e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 ABA79461.1 - 3.4e-12 46.5 0.0 4.6e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 ABA79461.1 - 3.1e-10 40.2 0.1 1.3e-08 34.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 ABA79461.1 - 1.5e-06 27.6 1.9 3.4e-06 26.5 0.5 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 ABA79461.1 - 0.00011 22.0 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 ABA79461.1 - 0.00015 21.3 2.9 0.0011 18.5 2.9 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 ABA79461.1 - 0.00086 19.2 0.0 0.0021 17.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 ABA79461.1 - 0.0048 15.9 2.2 0.01 14.8 0.2 2.1 2 1 1 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 ABA79461.1 - 0.043 13.1 0.5 0.086 12.1 0.1 1.7 2 0 0 2 2 2 0 ATPase MipZ NB-ARC PF00931.22 ABA79461.1 - 0.048 12.9 0.1 0.088 12.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 ABA79461.1 - 0.11 12.1 0.5 0.3 10.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 ABA79461.1 - 0.34 11.0 0.8 2.8 8.0 0.2 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain Mg-por_mtran_C PF07109.11 ABA79462.1 - 4.6e-28 97.4 0.0 1.4e-27 95.9 0.0 1.8 2 0 0 2 2 2 1 Magnesium-protoporphyrin IX methyltransferase C-terminus Methyltransf_25 PF13649.6 ABA79462.1 - 9.3e-17 61.5 0.1 1.5e-16 60.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79462.1 - 9e-14 51.5 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79462.1 - 1e-12 48.5 0.0 1.6e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA79462.1 - 2.2e-12 47.6 0.0 3.3e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79462.1 - 6e-12 45.7 0.0 7.5e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA79462.1 - 2e-07 30.7 0.0 2.7e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 ABA79462.1 - 5.9e-07 29.0 0.0 7.6e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 ABA79462.1 - 5.8e-06 26.2 0.0 8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 ABA79462.1 - 8.2e-06 25.6 0.0 1.1e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 ABA79462.1 - 1.4e-05 24.5 0.0 2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 ABA79462.1 - 8.4e-05 22.0 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 ABA79462.1 - 0.0001 22.1 0.0 0.00014 21.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.20 ABA79462.1 - 0.00022 20.4 0.0 0.0003 20.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CheR PF01739.18 ABA79462.1 - 0.00058 19.4 0.0 0.52 9.8 0.0 2.6 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Cons_hypoth95 PF03602.15 ABA79462.1 - 0.00084 19.0 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 ABA79462.1 - 0.0025 17.8 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 ABA79462.1 - 0.0044 16.6 0.0 0.0063 16.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 ABA79462.1 - 0.0088 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 ABA79462.1 - 0.009 15.4 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.11 ABA79462.1 - 0.018 14.0 0.0 0.05 12.5 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) Methyltransf_18 PF12847.7 ABA79462.1 - 0.031 14.2 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 ABA79462.1 - 0.19 10.7 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PUCC PF03209.15 ABA79463.2 - 2.4e-164 547.1 34.6 2.8e-164 546.9 34.6 1.0 1 0 0 1 1 1 1 PUCC protein MFS_1 PF07690.16 ABA79463.2 - 2.2e-15 56.4 45.3 2.2e-15 56.4 45.3 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily BT1 PF03092.16 ABA79463.2 - 2.2e-05 22.9 2.5 3.3e-05 22.3 2.5 1.2 1 0 0 1 1 1 1 BT1 family OATP PF03137.20 ABA79463.2 - 0.4 8.9 4.6 0.048 12.0 0.2 1.7 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family PRCH PF03967.13 ABA79464.1 - 3.2e-54 182.7 0.0 7.4e-54 181.5 0.0 1.6 2 0 0 2 2 2 1 Photosynthetic reaction centre, H-chain N-terminal region PRC PF05239.16 ABA79464.1 - 1.7e-10 40.8 0.0 3.1e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 PRC-barrel domain bPH_2 PF03703.14 ABA79465.1 - 2.1e-13 50.3 0.0 2.9e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain Rubrerythrin PF02915.17 ABA79468.1 - 1.7e-36 125.6 0.1 2.9e-36 124.9 0.1 1.4 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 ABA79468.1 - 0.023 14.9 0.0 0.054 13.7 0.0 1.6 1 0 0 1 1 1 0 Ferritin-like domain FA_desaturase_2 PF03405.14 ABA79468.1 - 0.074 11.9 0.1 1.5 7.6 0.1 2.1 2 0 0 2 2 2 0 Fatty acid desaturase COQ7 PF03232.13 ABA79468.1 - 0.19 11.5 0.0 7.4 6.3 0.0 2.7 3 0 0 3 3 3 0 Ubiquinone biosynthesis protein COQ7 DUF3623 PF12291.8 ABA79469.1 - 8.4e-102 339.7 17.5 9.9e-102 339.5 17.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3623) Cytochrom_C PF00034.21 ABA79470.1 - 9.2e-05 23.5 2.1 0.00082 20.5 2.1 2.1 1 1 0 1 1 1 1 Cytochrome c Fer2_4 PF13510.6 ABA79470.1 - 0.012 15.6 0.1 0.019 15.0 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain YebG PF07130.12 ABA79470.1 - 0.038 13.8 0.3 0.075 12.9 0.3 1.4 1 0 0 1 1 1 0 YebG protein DUF1358 PF07096.11 ABA79470.1 - 0.042 13.8 0.3 0.072 13.1 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) Cytochrome_CBB3 PF13442.6 ABA79470.1 - 0.19 12.0 3.5 1.1 9.6 3.5 2.3 1 1 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III ABC_tran PF00005.27 ABA79471.1 - 4.7e-28 98.4 0.0 6.1e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79471.1 - 1.3e-09 38.4 0.2 0.0014 18.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 ABA79471.1 - 0.0013 18.5 0.1 0.002 17.9 0.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 ABA79471.1 - 0.0023 17.4 0.1 0.021 14.3 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA79471.1 - 0.0034 17.9 0.2 0.0048 17.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA79471.1 - 0.004 17.1 0.1 0.0065 16.4 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 ABA79471.1 - 0.0075 16.0 0.3 0.013 15.2 0.3 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 ABA79471.1 - 0.0092 14.8 0.1 0.77 8.5 0.5 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 ABA79471.1 - 0.011 16.1 0.1 0.014 15.8 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 ABA79471.1 - 0.022 14.5 0.2 0.026 14.2 0.2 1.4 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 ABA79471.1 - 0.049 11.2 0.1 0.063 10.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_22 PF13401.6 ABA79471.1 - 0.11 12.8 0.2 0.58 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA79471.1 - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_27 PF13514.6 ABA79471.1 - 0.12 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA79471.1 - 0.18 12.4 0.1 0.38 11.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 ABA79471.1 - 0.19 11.4 0.0 0.31 10.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.23 ABA79471.1 - 0.21 11.7 0.2 0.45 10.6 0.2 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase MCM PF00493.23 ABA79471.1 - 0.22 10.6 0.0 0.36 9.9 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain AAA_28 PF13521.6 ABA79471.1 - 0.23 11.7 0.2 0.37 11.0 0.2 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA79472.1 - 1e-26 94.1 0.0 1.3e-26 93.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79472.1 - 1.1e-07 32.0 0.3 0.00069 19.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 ABA79472.1 - 4.2e-07 29.7 0.1 7.9e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 ABA79472.1 - 7.6e-06 25.5 0.3 0.006 16.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA79472.1 - 8e-06 26.5 0.2 1.1e-05 26.0 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA79472.1 - 0.0012 18.6 0.6 0.21 11.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 ABA79472.1 - 0.0019 17.9 0.0 0.0036 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 ABA79472.1 - 0.0027 17.5 0.1 0.0037 17.0 0.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 ABA79472.1 - 0.0041 17.1 0.1 2.8 7.9 0.0 2.2 2 0 0 2 2 2 2 NACHT domain AAA_27 PF13514.6 ABA79472.1 - 0.016 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA79472.1 - 0.099 12.5 0.0 0.22 11.4 0.0 1.7 1 1 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 ABA79472.1 - 0.11 12.8 0.1 0.71 10.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.8 ABA79472.1 - 0.12 11.6 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) BPD_transp_2 PF02653.16 ABA79473.1 - 1.4e-38 132.7 32.0 1.4e-38 132.7 32.0 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA79474.1 - 3.2e-51 174.0 35.8 5.1e-51 173.4 35.8 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component RecC_C PF17946.1 ABA79474.1 - 0.079 12.7 1.6 0.11 12.2 0.2 2.0 2 0 0 2 2 2 0 RecC C-terminal domain HEAT_2 PF13646.6 ABA79474.1 - 0.96 9.9 18.8 0.92 9.9 3.8 4.4 3 2 1 4 4 4 0 HEAT repeats Peripla_BP_5 PF13433.6 ABA79475.1 - 5.7e-165 548.7 0.0 6.5e-165 548.5 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_6 PF13458.6 ABA79475.1 - 4.3e-68 230.5 0.1 4.9e-68 230.3 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Tautomerase_2 PF14552.6 ABA79475.1 - 0.12 12.4 0.0 3.9 7.7 0.0 2.4 2 0 0 2 2 2 0 Tautomerase enzyme cobW PF02492.19 ABA79476.1 - 2.6e-35 121.6 0.0 3e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 ABA79476.1 - 2.1e-06 26.9 0.4 1.4e-05 24.2 0.4 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 ABA79476.1 - 0.00027 20.5 0.1 0.0037 16.8 0.1 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_18 PF13238.6 ABA79476.1 - 0.0033 18.0 0.0 0.0047 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA79476.1 - 0.0037 17.4 0.0 0.0054 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 ABA79476.1 - 0.0038 17.3 0.0 0.0082 16.2 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 ABA79476.1 - 0.009 15.3 0.0 0.025 13.9 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin TsaE PF02367.17 ABA79476.1 - 0.011 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 ABA79476.1 - 0.011 15.6 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_23 PF13476.6 ABA79476.1 - 0.014 15.9 0.0 0.02 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA79476.1 - 0.016 15.5 0.0 0.025 15.0 0.0 1.2 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 ABA79476.1 - 0.021 14.8 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.14 ABA79476.1 - 0.026 14.4 0.0 0.42 10.5 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 ABA79476.1 - 0.034 14.2 0.0 0.057 13.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 ABA79476.1 - 0.053 13.2 0.1 0.093 12.3 0.1 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 ABA79476.1 - 0.054 13.9 0.1 0.054 13.9 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 ABA79476.1 - 0.076 12.7 0.1 0.15 11.8 0.0 1.5 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 ABA79476.1 - 0.081 12.8 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 ABA79476.1 - 0.14 12.6 0.0 0.22 12.1 0.0 1.2 1 0 0 1 1 1 0 ABC transporter dNK PF01712.19 ABA79476.1 - 0.18 11.6 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase CoaE PF01121.20 ABA79476.1 - 0.19 11.4 0.6 0.68 9.6 0.5 1.9 1 1 1 2 2 2 0 Dephospho-CoA kinase Thymidylate_kin PF02223.17 ABA79476.1 - 0.19 11.4 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase UreF PF01730.16 ABA79477.1 - 1.9e-30 106.2 7.8 1.9e-30 106.2 7.8 1.5 2 0 0 2 2 2 1 UreF UreE_C PF05194.12 ABA79478.1 - 1.5e-27 95.9 4.2 2.2e-27 95.4 4.2 1.2 1 0 0 1 1 1 1 UreE urease accessory protein, C-terminal domain UreE_N PF02814.15 ABA79478.1 - 2e-11 43.3 0.3 4.2e-11 42.3 0.3 1.6 1 0 0 1 1 1 1 UreE urease accessory protein, N-terminal domain MDMPI_C PF07398.11 ABA79478.1 - 1.7 9.6 7.4 6.2 7.7 0.5 2.4 2 1 0 2 2 2 0 MDMPI C-terminal domain Amidohydro_1 PF01979.20 ABA79480.1 - 2.5e-77 260.5 1.4 3.1e-77 260.2 1.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 ABA79480.1 - 2.8e-57 192.3 1.9 2.8e-57 192.3 1.9 1.9 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 ABA79480.1 - 1.9e-09 37.5 0.8 8.6e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 Amidohydrolase family p450 PF00067.22 ABA79480.1 - 0.027 13.2 0.0 0.041 12.6 0.0 1.1 1 0 0 1 1 1 0 Cytochrome P450 Cytochrom_C PF00034.21 ABA79481.1 - 4.3e-10 40.6 0.0 0.00061 20.9 0.0 2.5 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA79481.1 - 3.8e-08 33.5 4.1 0.0032 17.8 0.0 3.1 2 2 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 ABA79481.1 - 0.0075 16.0 0.7 4.6 7.1 0.0 2.3 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) TFIIB PF00382.19 ABA79482.1 - 0.028 14.5 0.9 0.04 14.0 0.9 1.3 1 0 0 1 1 1 0 Transcription factor TFIIB repeat Glycos_trans_3N PF02885.17 ABA79482.1 - 1.3 8.9 7.3 0.14 12.0 2.8 1.8 2 1 0 2 2 2 0 Glycosyl transferase family, helical bundle domain Urease_beta PF00699.20 ABA79483.1 - 6.2e-46 154.4 0.0 6.9e-46 154.3 0.0 1.0 1 0 0 1 1 1 1 Urease beta subunit YcgR_2 PF12945.7 ABA79483.1 - 0.087 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Flagellar protein YcgR HTS PF04204.16 ABA79483.1 - 0.14 11.1 0.0 0.15 11.0 0.0 1.0 1 0 0 1 1 1 0 Homoserine O-succinyltransferase PapD_N PF00345.20 ABA79483.1 - 0.14 12.0 0.0 0.38 10.7 0.0 1.6 1 1 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain Urease_gamma PF00547.18 ABA79484.1 - 1.4e-44 150.5 0.2 1.5e-44 150.3 0.2 1.0 1 0 0 1 1 1 1 Urease, gamma subunit UreD PF01774.17 ABA79485.1 - 1.2e-39 136.5 0.9 1.5e-39 136.1 0.9 1.1 1 0 0 1 1 1 1 UreD urease accessory protein DUF3509 PF12021.8 ABA79485.1 - 0.14 11.9 0.2 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) APH PF01636.23 ABA79486.2 - 3.6e-31 108.9 9.6 3.6e-31 108.9 9.6 1.5 2 0 0 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 ABA79486.2 - 0.012 15.0 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family CbtB PF09489.10 ABA79486.2 - 0.068 13.3 0.7 0.068 13.3 0.7 2.0 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Pkinase PF00069.25 ABA79486.2 - 0.14 11.5 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein kinase domain NQRA_SLBB PF11973.8 ABA79486.2 - 0.15 12.7 0.0 0.49 11.1 0.0 1.9 1 0 0 1 1 1 0 NQRA C-terminal domain Aminotran_3 PF00202.21 ABA79487.1 - 2.1e-73 247.3 0.0 2.6e-73 247.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III LHC PF00556.20 ABA79489.1 - 1.7e-08 34.5 0.4 2.1e-08 34.2 0.4 1.1 1 0 0 1 1 1 1 Antenna complex alpha/beta subunit LHC PF00556.20 ABA79490.1 - 4.3e-13 49.2 4.3 5.4e-13 48.9 4.3 1.2 1 0 0 1 1 1 1 Antenna complex alpha/beta subunit PUCC PF03209.15 ABA79491.1 - 9.2e-163 541.9 26.4 1.1e-162 541.7 26.4 1.0 1 0 0 1 1 1 1 PUCC protein MFS_1 PF07690.16 ABA79491.1 - 1.5e-20 73.4 66.0 2.3e-18 66.3 42.9 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 ABA79491.1 - 0.019 13.3 5.1 0.2 9.9 1.3 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family RseC_MucC PF04246.12 ABA79491.1 - 7 6.6 7.5 0.99 9.4 0.1 3.1 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC GerE PF00196.19 ABA79492.2 - 1.6e-17 62.8 0.3 2.9e-17 62.0 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA79492.2 - 0.00066 19.3 0.2 0.0033 17.1 0.2 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 TadZ_N PF16968.5 ABA79492.2 - 0.017 14.8 0.0 0.036 13.7 0.0 1.6 1 1 0 1 1 1 0 Pilus assembly protein TadZ N-terminal HTH_10 PF04967.12 ABA79492.2 - 0.062 13.1 0.1 0.35 10.7 0.1 2.1 1 1 0 1 1 1 0 HTH DNA binding domain Sigma70_r4 PF04545.16 ABA79492.2 - 0.067 12.7 0.8 0.18 11.3 0.1 2.2 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.6 ABA79492.2 - 0.068 12.9 1.6 0.26 11.1 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_23 PF13384.6 ABA79492.2 - 0.12 12.2 0.1 0.36 10.7 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Response_reg PF00072.24 ABA79492.2 - 0.13 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Response regulator receiver domain CENP-B_N PF04218.13 ABA79492.2 - 0.17 11.6 0.3 0.48 10.1 0.1 1.8 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain Radical_SAM PF04055.21 ABA79493.1 - 5.9e-21 75.6 0.0 9.9e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 ABA79493.1 - 0.022 14.8 0.1 0.059 13.4 0.1 1.8 1 0 0 1 1 1 0 HemN C-terminal domain NnrU PF07298.11 ABA79494.1 - 1e-46 159.2 15.4 1.1e-46 159.0 15.4 1.0 1 0 0 1 1 1 1 NnrU protein DUF1449 PF07290.11 ABA79495.1 - 0.025 14.2 0.3 0.026 14.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) VWA_2 PF13519.6 ABA79497.1 - 7e-07 29.9 0.0 1.5e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 ABA79497.1 - 3.3e-05 24.2 0.0 6.6e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Cytidylate_kin2 PF13189.6 ABA79497.1 - 0.066 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase-like family Glyoxalase_6 PF18029.1 ABA79497.1 - 0.13 13.1 6.4 0.44 11.4 0.3 3.1 2 1 0 2 2 2 0 Glyoxalase-like domain Sirohm_synth_M PF14824.6 ABA79497.1 - 1.4 8.4 3.5 3.6 7.1 0.2 2.9 3 0 0 3 3 3 0 Sirohaem biosynthesis protein central AAA_5 PF07728.14 ABA79498.1 - 3.8e-39 133.8 0.0 5.4e-39 133.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) CbbQ_C PF08406.10 ABA79498.1 - 6.9e-29 100.0 2.1 1.4e-28 99.0 2.1 1.5 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal Mg_chelatase PF01078.21 ABA79498.1 - 1.1e-06 28.2 0.0 0.00035 20.0 0.0 2.2 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 ABA79498.1 - 3.1e-05 23.8 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA79498.1 - 0.00026 21.4 0.0 0.00037 20.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA79498.1 - 0.00059 20.3 0.0 0.0009 19.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 ABA79498.1 - 0.0016 17.5 0.0 0.0051 15.8 0.0 1.7 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_7 PF12775.7 ABA79498.1 - 0.0028 17.2 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 ABA79498.1 - 0.0038 16.9 0.0 0.0066 16.2 0.0 1.4 1 1 0 1 1 1 1 Sigma-54 interaction domain TsaE PF02367.17 ABA79498.1 - 0.0051 16.8 0.0 0.029 14.4 0.0 2.0 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 ABA79498.1 - 0.022 15.2 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 ABA79498.1 - 0.036 14.1 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 ABA79498.1 - 0.037 14.0 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain MCM PF00493.23 ABA79498.1 - 0.067 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 MCM P-loop domain AAA_22 PF13401.6 ABA79498.1 - 0.093 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 ABA79498.1 - 0.13 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 ABA79498.1 - 0.15 12.2 0.1 0.22 11.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 ABA79498.1 - 0.17 12.2 0.0 0.36 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 ABA79498.1 - 0.18 11.3 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain COX1 PF00115.20 ABA79499.1 - 3.7e-74 250.1 66.1 4.7e-74 249.8 66.1 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Cytochrome_CBB3 PF13442.6 ABA79500.1 - 1.7e-05 25.1 0.1 3e-05 24.2 0.1 1.5 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA79500.1 - 1.8e-05 25.8 0.0 3.2e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 Cytochrome c DUF1858 PF08984.11 ABA79501.1 - 3.4e-06 27.1 0.0 3.8e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) DUF2087 PF09860.9 ABA79502.1 - 5e-22 77.8 0.4 8.4e-22 77.1 0.2 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2087) cNMP_binding PF00027.29 ABA79503.1 - 2.9e-17 62.5 0.0 4.4e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 ABA79503.1 - 5e-17 61.7 0.5 8.1e-17 61.0 0.5 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 ABA79503.1 - 0.00063 19.4 0.0 0.0013 18.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_23 PF13384.6 ABA79503.1 - 0.00086 19.0 0.1 0.0022 17.7 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 ABA79503.1 - 0.044 13.8 0.2 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix INTAP PF16617.5 ABA79503.1 - 0.13 12.7 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Intersectin and clathrin adaptor AP2 binding region HTH_15 PF12324.8 ABA79503.1 - 0.13 12.2 0.0 4.7 7.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase NnrS PF05940.12 ABA79504.1 - 1.3e-102 343.9 63.8 1.5e-102 343.8 63.8 1.0 1 0 0 1 1 1 1 NnrS protein GGDEF PF00990.21 ABA79505.1 - 1.7e-34 118.9 0.0 2.1e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GAF PF01590.26 ABA79505.1 - 4.7e-09 37.0 0.0 9.9e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 ABA79505.1 - 1.9e-08 34.7 0.0 4.9e-08 33.4 0.0 1.7 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.6 ABA79505.1 - 0.00044 20.6 0.0 0.002 18.5 0.0 2.0 2 1 0 3 3 3 1 GAF domain Radical_SAM PF04055.21 ABA79505.1 - 0.0072 16.7 0.0 0.017 15.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily BcsB PF03170.13 ABA79508.1 - 1.4e-22 79.9 0.0 2.3e-11 42.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial cellulose synthase subunit Glycos_transf_2 PF00535.26 ABA79509.1 - 8.1e-36 123.4 0.0 1.4e-35 122.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA79509.1 - 5.6e-27 95.1 0.0 1e-26 94.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 ABA79509.1 - 2.9e-21 76.3 0.9 2.9e-21 76.3 0.9 2.6 2 2 1 3 3 3 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 ABA79509.1 - 8e-19 67.8 0.0 1.5e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 ABA79509.1 - 7.3e-12 44.6 0.6 7.1e-10 38.0 0.3 2.1 1 1 1 2 2 2 2 Cellulose synthase PilZ PF07238.14 ABA79509.1 - 1.3e-06 28.7 0.0 2.2e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 PilZ domain Chitin_synth_2 PF03142.15 ABA79509.1 - 0.054 12.1 0.1 0.69 8.5 0.3 2.3 3 0 0 3 3 3 0 Chitin synthase CBP_BcsN PF17038.5 ABA79510.1 - 0.015 14.6 0.0 0.18 11.2 0.0 2.0 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsN EAL PF00563.20 ABA79511.1 - 1.7e-74 250.3 0.1 5.2e-74 248.8 0.0 1.8 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 ABA79511.1 - 1.8e-28 99.3 0.0 3.8e-28 98.2 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 ABA79511.1 - 1.6e-10 41.2 1.1 3.5e-09 36.9 0.2 3.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 ABA79511.1 - 4.9e-05 23.2 0.0 0.00062 19.7 0.0 3.0 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 ABA79511.1 - 0.00013 22.0 0.1 0.00087 19.3 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_7 PF12860.7 ABA79511.1 - 0.00019 21.6 0.0 0.00046 20.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 ABA79511.1 - 0.00049 20.3 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain GAF PF01590.26 ABA79511.1 - 0.043 14.4 0.3 0.21 12.2 0.1 2.3 2 0 0 2 2 2 0 GAF domain Metallophos PF00149.28 ABA79512.1 - 2.6e-17 64.0 0.0 4.6e-17 63.2 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 ABA79512.1 - 2.5e-12 47.3 0.0 4.8e-12 46.4 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 ABA79512.1 - 0.0013 18.1 0.0 0.26 10.6 0.0 2.3 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily PGA_cap PF09587.10 ABA79512.1 - 0.008 15.7 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap B12-binding PF02310.19 ABA79512.1 - 0.088 12.8 0.2 4.4 7.4 0.0 2.4 1 1 1 2 2 2 0 B12 binding domain DAGK_cat PF00781.24 ABA79513.1 - 7.5e-22 77.3 0.1 1.1e-21 76.7 0.1 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 ABA79513.1 - 0.002 17.4 0.0 0.0025 17.1 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Methyltransf_25 PF13649.6 ABA79514.1 - 6.3e-11 42.8 0.0 1e-10 42.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA79514.1 - 6.1e-09 36.5 0.0 9.6e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79514.1 - 9.1e-09 35.3 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79514.1 - 1.1e-08 35.6 0.0 1.8e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79514.1 - 2.9e-08 33.7 0.0 3.9e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA79514.1 - 5e-06 26.2 0.0 6.6e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 ABA79514.1 - 0.0046 16.6 0.0 0.0058 16.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 ABA79514.1 - 0.008 15.6 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 ABA79514.1 - 0.011 15.4 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 ABA79514.1 - 0.016 15.0 0.0 0.035 13.8 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 ABA79514.1 - 0.02 14.2 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Pox_MCEL PF03291.16 ABA79514.1 - 0.02 14.0 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme RrnaAD PF00398.20 ABA79514.1 - 0.32 10.0 0.0 0.42 9.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase AI-2E_transport PF01594.16 ABA79515.1 - 3e-43 148.2 31.6 5.4e-43 147.4 31.6 1.4 1 1 0 1 1 1 1 AI-2E family transporter PepSY_TM PF03929.16 ABA79515.1 - 0.0082 15.8 0.2 0.0082 15.8 0.2 2.7 3 0 0 3 3 3 1 PepSY-associated TM region Amidohydro_3 PF07969.11 ABA79516.1 - 1.3e-49 170.0 4.7 1.5e-47 163.1 4.7 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 ABA79516.1 - 8.1e-13 48.4 0.0 1.1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_2 PF04909.14 ABA79516.1 - 0.013 15.3 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Amidohydrolase ESR1_C PF12743.7 ABA79516.1 - 0.059 13.1 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Oestrogen-type nuclear receptor final C-terminal BPD_transp_2 PF02653.16 ABA79517.1 - 9.7e-30 103.6 33.3 1.2e-29 103.3 33.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA79518.1 - 6.2e-39 133.8 30.9 6.2e-39 133.8 30.9 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 ABA79519.1 - 9.8e-45 152.4 0.0 1.5e-30 106.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA79519.1 - 3.4e-07 30.4 0.7 0.0058 16.5 0.3 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA79519.1 - 0.0035 17.2 1.2 0.011 15.6 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 ABA79519.1 - 0.01 16.2 0.2 0.031 14.7 0.1 1.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 ABA79519.1 - 0.013 15.2 3.2 0.16 11.7 0.1 2.7 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA79519.1 - 0.02 15.4 0.1 0.028 14.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA79519.1 - 0.03 14.1 0.1 0.12 12.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 ABA79519.1 - 0.037 14.0 0.1 0.066 13.2 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 ABA79519.1 - 0.057 13.7 0.1 1 9.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 ABA79519.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 ABA79519.1 - 0.12 11.8 0.0 6.8 6.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Gtr1_RagA PF04670.12 ABA79519.1 - 0.22 10.8 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Bmp PF02608.14 ABA79520.1 - 1.7e-31 109.4 0.2 2.3e-31 108.9 0.2 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like SBP_bac_6 PF13343.6 ABA79521.1 - 2.1e-30 105.9 0.2 3.6e-30 105.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA79521.1 - 5.3e-23 82.2 3.8 7.5e-23 81.7 3.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA79521.1 - 3.4e-06 27.0 0.2 3.4e-06 27.0 0.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA79521.1 - 8e-06 26.0 11.4 1.7e-05 24.9 11.4 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA79522.1 - 1e-09 38.4 11.8 1e-09 38.4 11.8 3.0 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA79523.1 - 3.2e-07 30.3 33.7 1.1e-06 28.5 30.1 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4064 PF13273.6 ABA79523.1 - 0.0016 18.7 0.3 0.0016 18.7 0.3 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF4064) 7tm_1 PF00001.21 ABA79523.1 - 0.014 14.7 0.1 0.014 14.7 0.1 1.9 2 1 0 2 2 2 0 7 transmembrane receptor (rhodopsin family) UL2 PF08196.11 ABA79523.1 - 0.068 13.1 0.5 0.2 11.6 0.5 1.8 1 0 0 1 1 1 0 UL2 protein ABC_tran PF00005.27 ABA79524.1 - 6.4e-35 120.6 0.0 2e-34 119.1 0.0 1.8 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 ABA79524.1 - 3.8e-12 46.2 1.5 1.1e-11 44.7 0.1 2.5 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 ABA79524.1 - 2.4e-08 34.2 0.1 3.1e-05 23.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA79524.1 - 7.4e-05 23.2 0.2 0.0002 21.8 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA79524.1 - 0.00058 20.3 0.0 0.0042 17.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 ABA79524.1 - 0.001 18.5 0.0 0.082 12.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA79524.1 - 0.0035 17.6 0.1 0.0088 16.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 ABA79524.1 - 0.025 14.5 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain PRK PF00485.18 ABA79524.1 - 0.029 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TniB PF05621.11 ABA79524.1 - 0.043 13.2 0.1 2.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein ABC_ATPase PF09818.9 ABA79524.1 - 0.049 12.4 0.0 0.4 9.4 0.0 2.0 1 1 0 1 1 1 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 ABA79524.1 - 0.11 12.0 0.0 0.57 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Aldo_ket_red PF00248.21 ABA79526.2 - 5.8e-44 150.5 0.0 6.9e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Fer2 PF00111.27 ABA79527.1 - 1.4e-16 60.2 0.3 1.6e-16 60.0 0.3 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF1364 PF07102.12 ABA79527.1 - 0.049 13.5 0.1 0.076 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1364) PG_binding_1 PF01471.18 ABA79528.1 - 0.001 19.2 0.0 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Trypsin_2 PF13365.6 ABA79529.2 - 3.3e-36 125.4 0.4 8.5e-36 124.1 0.4 1.7 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 ABA79529.2 - 2.4e-26 91.9 5.8 6.4e-17 61.7 0.2 3.5 3 0 0 3 3 3 2 PDZ domain Trypsin PF00089.26 ABA79529.2 - 5.5e-15 55.8 0.0 1e-14 54.9 0.0 1.4 1 0 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 ABA79529.2 - 4.3e-14 52.1 4.3 4e-07 29.8 0.3 3.1 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 ABA79529.2 - 5.9e-13 49.0 0.3 2.9e-05 24.4 0.0 2.8 3 0 0 3 3 3 2 PDZ domain Peptidase_S46 PF10459.9 ABA79529.2 - 0.00066 18.5 0.2 0.12 11.0 0.3 2.2 2 0 0 2 2 2 2 Peptidase S46 GRASP55_65 PF04495.14 ABA79529.2 - 0.052 13.9 0.0 0.56 10.5 0.0 2.6 3 0 0 3 3 3 0 GRASP55/65 PDZ-like domain Peptidase_S29 PF02907.15 ABA79529.2 - 0.096 12.4 0.1 0.24 11.1 0.1 1.6 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Peptidase_S7 PF00949.21 ABA79529.2 - 0.15 11.9 0.2 0.24 11.2 0.2 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Alpha_GJ PF03229.13 ABA79529.2 - 0.78 10.3 6.3 8 7.0 0.3 3.7 4 0 0 4 4 4 0 Alphavirus glycoprotein J Band_7 PF01145.25 ABA79530.1 - 4.2e-23 82.3 1.2 4.2e-23 82.3 1.2 1.7 1 1 1 2 2 2 1 SPFH domain / Band 7 family Flot PF15975.5 ABA79530.1 - 0.12 12.5 0.1 0.12 12.5 0.1 2.6 2 0 0 2 2 2 0 Flotillin SepRS_C PF18006.1 ABA79530.1 - 0.16 12.1 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 O-phosphoseryl-tRNA synthetase C-terminal domain Band_7 PF01145.25 ABA79531.1 - 7.1e-23 81.5 2.5 1.2e-22 80.8 2.5 1.4 1 1 0 1 1 1 1 SPFH domain / Band 7 family Apolipoprotein PF01442.18 ABA79531.1 - 0.015 15.1 3.9 0.026 14.4 3.9 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Pyr_redox_2 PF07992.14 ABA79532.1 - 1.6e-64 218.0 0.2 1.9e-64 217.7 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 ABA79532.1 - 3.8e-33 114.0 0.2 7.3e-33 113.1 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 ABA79532.1 - 2e-16 60.3 4.8 2.6e-16 59.9 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA79532.1 - 9.8e-12 44.7 0.1 2.7e-10 40.0 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA79532.1 - 6.7e-05 22.4 2.2 0.0013 18.2 2.8 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 ABA79532.1 - 0.00074 18.7 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 ABA79532.1 - 0.013 14.2 3.3 1.4 7.6 1.7 3.1 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_9 PF13454.6 ABA79532.1 - 0.015 15.3 3.5 2.7 8.0 0.1 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thi4 PF01946.17 ABA79532.1 - 0.14 11.4 1.0 0.28 10.4 1.0 1.4 1 0 0 1 1 1 0 Thi4 family FAD_binding_2 PF00890.24 ABA79532.1 - 0.88 8.6 10.6 7 5.6 9.8 2.7 1 1 1 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.21 ABA79532.1 - 1.5 8.1 5.4 6.4 6.0 0.8 2.7 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 ABA79532.1 - 1.6 7.7 11.6 0.52 9.3 6.0 2.4 2 1 0 2 2 2 0 Glucose inhibited division protein A DAO PF01266.24 ABA79532.1 - 2 7.9 16.7 0.34 10.4 0.2 3.8 3 1 1 4 4 4 0 FAD dependent oxidoreductase Rib_5-P_isom_A PF06026.14 ABA79533.1 - 5.1e-61 205.2 0.0 6.4e-61 204.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 ABA79533.1 - 2.7e-05 24.1 0.2 0.00021 21.3 0.0 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain SDH_alpha PF03313.15 ABA79535.1 - 1e-96 323.6 8.5 1.3e-96 323.2 8.5 1.1 1 0 0 1 1 1 1 Serine dehydratase alpha chain SDH_beta PF03315.15 ABA79535.1 - 6.8e-51 172.7 0.1 2.7e-50 170.8 0.0 2.0 2 0 0 2 2 2 1 Serine dehydratase beta chain EamA PF00892.20 ABA79537.1 - 5.6e-23 81.6 34.5 6.7e-14 52.2 12.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF2070 PF09843.9 ABA79537.1 - 0.069 11.4 16.8 0.11 10.8 16.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2852 PF11014.8 ABA79537.1 - 0.21 11.8 0.4 0.51 10.5 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2852) TPK_catalytic PF04263.16 ABA79538.1 - 1.5e-13 50.8 0.0 2.1e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain TPK_B1_binding PF04265.14 ABA79538.1 - 3.3e-08 33.1 0.0 5.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, vitamin B1 binding domain DUF2842 PF11003.8 ABA79540.1 - 3.9e-19 68.6 7.3 4.5e-19 68.5 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2842) DUF4396 PF14342.6 ABA79540.1 - 0.085 13.2 0.3 0.1 13.0 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) Adenylsucc_synt PF00709.21 ABA79541.1 - 4.1e-170 566.2 0.0 4.6e-170 566.1 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase SecG PF03840.14 ABA79542.1 - 9.3e-18 64.1 8.8 1.3e-17 63.6 8.8 1.2 1 0 0 1 1 1 1 Preprotein translocase SecG subunit CTP_synth_N PF06418.14 ABA79543.1 - 4.4e-117 390.1 0.0 6.6e-117 389.5 0.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 ABA79543.1 - 1.4e-52 178.2 0.0 2.2e-52 177.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 ABA79543.1 - 1.4e-08 34.7 0.0 3.9e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 RsmJ PF04378.13 ABA79544.1 - 5.6e-48 163.3 0.0 7e-48 163.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ TerB PF05099.13 ABA79545.1 - 3.3e-40 137.4 5.6 3.7e-40 137.2 5.6 1.0 1 0 0 1 1 1 1 Tellurite resistance protein TerB DUF533 PF04391.12 ABA79545.1 - 1e-06 28.5 2.8 0.0043 16.7 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF533) HTH_47 PF16221.5 ABA79545.1 - 0.12 12.0 0.2 1 8.9 0.0 2.3 2 1 0 2 2 2 0 winged helix-turn-helix ABC_tran PF00005.27 ABA79546.1 - 3.5e-28 98.8 0.0 4.7e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79546.1 - 5.4e-12 46.1 0.1 1.4e-06 28.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79546.1 - 8.9e-06 25.3 0.1 0.0027 17.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA79546.1 - 0.00051 19.7 0.1 0.001 18.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA79546.1 - 0.00069 20.0 1.1 0.0042 17.5 1.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 ABA79546.1 - 0.0011 17.9 0.2 0.33 9.7 0.0 2.6 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 ABA79546.1 - 0.013 15.4 0.1 0.024 14.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase APS_kinase PF01583.20 ABA79546.1 - 0.035 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 ABA79546.1 - 0.036 13.6 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 ABA79546.1 - 0.038 13.7 0.0 5.5 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 ABA79546.1 - 0.039 13.3 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 ABA79546.1 - 0.062 13.5 0.2 0.097 12.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 ABA79546.1 - 0.093 11.9 0.0 0.15 11.2 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_22 PF13401.6 ABA79546.1 - 0.097 13.0 0.1 0.17 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 ABA79546.1 - 0.11 12.6 0.1 0.26 11.3 0.1 1.6 1 1 0 1 1 1 0 Helicase HerA, central domain G-alpha PF00503.20 ABA79546.1 - 0.12 11.5 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit SBP_bac_3 PF00497.20 ABA79547.1 - 1.2e-53 181.9 0.0 1.4e-53 181.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 ABA79547.1 - 3e-07 30.6 0.0 9.7e-07 29.0 0.0 1.9 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site ZinT PF09223.11 ABA79547.1 - 0.004 17.1 0.0 0.0062 16.4 0.0 1.3 1 0 0 1 1 1 1 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BPD_transp_1 PF00528.22 ABA79548.1 - 1e-15 58.0 3.7 1e-15 58.0 3.7 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA79549.1 - 1.4e-13 51.0 17.1 1.4e-13 51.0 17.1 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Gln-synt_C PF00120.24 ABA79550.1 - 1.5e-98 330.0 0.0 1.8e-98 329.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain GATase PF00117.28 ABA79551.1 - 3.5e-12 46.5 0.0 5.3e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 ABA79551.1 - 1.7e-05 24.7 0.1 0.00022 21.1 0.0 2.4 2 1 0 3 3 3 1 Peptidase C26 Gln-synt_C PF00120.24 ABA79552.1 - 1.2e-104 350.0 0.0 1.4e-104 349.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 ABA79552.1 - 0.0012 18.6 0.1 0.0031 17.2 0.1 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DAO PF01266.24 ABA79553.1 - 2e-51 175.7 9.3 2.3e-51 175.4 9.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 ABA79553.1 - 1.8e-06 27.4 0.4 3.2e-06 26.6 0.3 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 ABA79553.1 - 2.1e-06 27.9 0.9 7.1e-06 26.2 0.9 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA79553.1 - 1.8e-05 24.2 0.2 7e-05 22.2 0.3 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 ABA79553.1 - 4.7e-05 22.7 0.5 9.6e-05 21.7 0.5 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 ABA79553.1 - 6.4e-05 22.2 1.9 0.00017 20.8 0.5 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 ABA79553.1 - 0.00032 19.9 1.0 0.00044 19.4 1.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 ABA79553.1 - 0.00088 18.1 0.3 0.0095 14.7 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 ABA79553.1 - 0.001 18.5 1.0 0.0014 18.1 1.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 ABA79553.1 - 0.0015 18.1 0.2 0.0026 17.4 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 ABA79553.1 - 0.0025 17.0 0.1 0.031 13.3 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 ABA79553.1 - 0.0047 17.4 0.3 0.019 15.5 0.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA79553.1 - 0.034 13.4 0.0 0.27 10.4 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 ABA79553.1 - 0.076 12.3 0.1 0.15 11.3 0.1 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 ABA79553.1 - 0.14 12.0 0.4 0.22 11.4 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ifi-6-16 PF06140.13 ABA79553.1 - 0.91 9.5 6.6 0.18 11.7 1.3 2.5 3 0 0 3 3 3 0 Interferon-induced 6-16 family Aminotran_3 PF00202.21 ABA79554.1 - 5.5e-89 298.6 0.0 6.6e-89 298.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III PHB_acc_N PF07879.11 ABA79555.1 - 4.1e-27 94.1 0.3 6.4e-27 93.4 0.3 1.3 1 0 0 1 1 1 1 PHB/PHA accumulation regulator DNA-binding domain PHB_acc PF05233.13 ABA79555.1 - 9.8e-10 38.3 1.1 4.2e-09 36.3 0.1 2.4 2 0 0 2 2 2 1 PHB accumulation regulatory domain FlxA PF14282.6 ABA79555.1 - 0.068 13.2 0.4 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 FlxA-like protein Phasin_2 PF09361.10 ABA79556.1 - 9.6e-05 22.6 18.3 9.6e-05 22.6 18.3 2.6 1 1 1 2 2 2 2 Phasin protein DBINO PF13892.6 ABA79556.1 - 1.4 9.3 5.8 0.92 9.9 1.1 2.1 1 1 1 2 2 2 0 DNA-binding domain PhaC_N PF07167.13 ABA79557.1 - 6.1e-75 250.6 0.1 9.7e-75 250.0 0.1 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_1 PF00561.20 ABA79557.1 - 1.3e-09 38.1 0.0 2.4e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold PHB_depo_C PF06850.11 ABA79558.1 - 4.1e-87 290.9 0.0 6.2e-87 290.3 0.0 1.3 1 0 0 1 1 1 1 PHB de-polymerase C-terminus Hydrolase_4 PF12146.8 ABA79559.2 - 1.2e-14 54.2 0.6 1.6e-10 40.7 0.4 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 ABA79559.2 - 2.2e-08 35.0 7.4 5.7e-08 33.6 7.4 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA79559.2 - 3.1e-06 27.0 0.3 4.2e-06 26.6 0.3 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.20 ABA79559.2 - 0.004 16.8 0.1 0.0062 16.2 0.1 1.2 1 0 0 1 1 1 1 Putative esterase Patatin PF01734.22 ABA79559.2 - 0.051 13.7 0.0 0.08 13.1 0.0 1.4 1 0 0 1 1 1 0 Patatin-like phospholipase UPF0227 PF05728.12 ABA79559.2 - 0.074 13.0 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0227) Ser_hydrolase PF06821.13 ABA79559.2 - 0.14 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase tRNA-synt_2b PF00587.25 ABA79560.1 - 3.6e-42 144.3 0.0 7e-42 143.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 ABA79560.1 - 1.3e-16 60.5 2.7 4.3e-16 58.9 1.3 2.6 3 0 0 3 3 3 1 Anticodon binding domain tRNA_SAD PF07973.14 ABA79560.1 - 2.7e-12 46.6 0.0 6.6e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 ABA79560.1 - 4.5e-12 45.8 0.0 9.3e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain CSD PF00313.22 ABA79561.1 - 4.2e-22 77.8 0.0 4.8e-22 77.6 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA79561.1 - 3.1e-05 23.5 0.1 4.2e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease B OB domain ArsC PF03960.15 ABA79562.1 - 7.1e-06 25.9 0.0 1.1e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 ABA79562.1 - 0.0001 22.5 0.0 0.00013 22.1 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin DUF2177 PF09945.9 ABA79563.1 - 2.4e-39 134.3 7.2 2.7e-39 134.1 7.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2177) Phage_holin_5_2 PF16079.5 ABA79563.1 - 0.036 14.4 0.3 0.036 14.4 0.3 1.9 3 0 0 3 3 3 0 Phage holin family Hol44, in holin superfamily V DHFR_1 PF00186.19 ABA79564.1 - 8.2e-45 152.4 0.0 9.6e-45 152.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.19 ABA79565.1 - 1e-99 333.0 0.0 1.2e-99 332.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Glyoxalase PF00903.25 ABA79566.1 - 3.2e-13 50.0 0.0 3.7e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 ABA79566.1 - 2.6e-11 43.7 0.0 2.2e-10 40.7 0.0 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 ABA79566.1 - 0.0067 16.6 0.0 1.3 9.1 0.0 2.2 1 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_6 PF18029.1 ABA79566.1 - 0.041 14.7 0.0 0.1 13.4 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase-like domain DUF1338 PF07063.13 ABA79566.1 - 0.14 11.3 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) RibD_C PF01872.17 ABA79567.1 - 2.4e-37 128.7 0.0 3.2e-37 128.3 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 ABA79567.1 - 3e-14 52.7 0.1 5.3e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 ABA79567.1 - 1.9e-08 34.2 0.0 3.1e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase ATP-cone PF03477.16 ABA79568.1 - 9.2e-17 61.4 0.3 1.3e-16 60.9 0.3 1.2 1 0 0 1 1 1 1 ATP cone domain zf-ribbon_3 PF13248.6 ABA79568.1 - 0.00059 19.2 0.8 0.82 9.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 ABA79568.1 - 0.002 17.6 0.8 1.5 8.4 0.1 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.6 ABA79568.1 - 0.012 16.0 1.9 0.099 13.0 2.0 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Di19 PF05605.12 ABA79568.1 - 0.026 14.8 0.2 0.056 13.7 0.2 1.5 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-ISL3 PF14690.6 ABA79568.1 - 0.056 14.1 1.0 11 6.8 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.18 ABA79568.1 - 0.11 12.4 0.9 0.51 10.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) GFA PF04828.14 ABA79568.1 - 0.14 12.5 0.1 0.25 11.7 0.0 1.5 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme NOB1_Zn_bind PF08772.11 ABA79568.1 - 0.19 11.9 1.4 0.82 9.9 1.4 1.9 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1595 PF12760.7 ABA79568.1 - 0.25 11.4 5.1 3.4 7.7 0.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 ABA79568.1 - 0.26 11.3 5.4 0.51 10.3 0.9 2.3 1 1 1 2 2 2 0 Nudix N-terminal zf-C2H2_4 PF13894.6 ABA79568.1 - 0.39 11.7 2.1 3.7 8.7 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ABA79568.1 - 0.51 10.5 2.2 2.5 8.3 2.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 ABA79568.1 - 0.51 10.6 3.7 1.2 9.5 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon zinc_ribbon_2 PF13240.6 ABA79568.1 - 1.9 8.3 6.6 3.7 7.4 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Sigma70_ner PF04546.13 ABA79570.1 - 1.1e-36 126.6 2.0 1.1e-36 126.6 2.0 3.3 4 1 0 4 4 4 1 Sigma-70, non-essential region Sigma70_r3 PF04539.16 ABA79570.1 - 2.2e-29 101.4 4.3 2.9e-29 101.0 0.7 3.1 3 0 0 3 3 3 1 Sigma-70 region 3 Sigma70_r1_1 PF03979.14 ABA79570.1 - 4.5e-22 77.9 0.6 4.5e-22 77.9 0.6 2.6 2 0 0 2 2 2 1 Sigma-70 factor, region 1.1 Sigma70_r2 PF04542.14 ABA79570.1 - 7.4e-22 76.9 0.3 2e-21 75.5 0.3 1.8 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 ABA79570.1 - 2.6e-20 71.7 7.7 1.8e-18 65.8 1.1 3.4 3 0 0 3 3 3 2 Sigma-70, region 4 Sigma70_r1_2 PF00140.20 ABA79570.1 - 6.9e-14 51.6 2.3 2.6e-13 49.7 0.2 2.9 3 0 0 3 3 3 1 Sigma-70 factor, region 1.2 MarR_2 PF12802.7 ABA79570.1 - 0.00011 22.0 0.3 1.2 9.1 0.0 3.5 3 0 0 3 3 3 2 MarR family FTCD_C PF04961.12 ABA79570.1 - 0.04 13.7 2.3 0.32 10.7 0.0 3.0 3 0 0 3 3 3 0 Formiminotransferase-cyclodeaminase Sigma70_r4_2 PF08281.12 ABA79570.1 - 0.045 13.4 0.6 23 4.8 0.0 3.8 3 0 0 3 3 3 0 Sigma-70, region 4 DUF1451 PF07295.11 ABA79570.1 - 0.064 13.3 1.7 0.23 11.5 0.2 2.7 2 0 0 2 2 2 0 Zinc-ribbon containing domain HTH_15 PF12324.8 ABA79570.1 - 0.15 12.0 0.4 16 5.6 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase HTH_25 PF13413.6 ABA79570.1 - 0.78 9.6 4.2 21 5.1 0.0 4.0 4 0 0 4 4 4 0 Helix-turn-helix domain Toprim_N PF08275.11 ABA79571.1 - 4.8e-37 126.9 0.0 7.7e-37 126.2 0.0 1.3 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain zf-CHC2 PF01807.20 ABA79571.1 - 4.9e-28 96.8 0.0 9.5e-28 95.9 0.0 1.5 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_4 PF13662.6 ABA79571.1 - 8.6e-16 58.2 0.0 2e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 ABA79571.1 - 2.1e-12 47.3 0.0 5.5e-12 45.9 0.0 1.8 1 0 0 1 1 1 1 Toprim-like DnaB_bind PF10410.9 ABA79571.1 - 2e-05 24.6 2.8 5.5e-05 23.3 0.2 3.2 4 0 0 4 4 4 1 DnaB-helicase binding domain of primase Toprim PF01751.22 ABA79571.1 - 3.4e-05 24.0 0.0 9.2e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_3 PF13362.6 ABA79571.1 - 0.0038 17.5 0.0 0.0098 16.2 0.0 1.8 1 0 0 1 1 1 1 Toprim domain CR6_interact PF10147.9 ABA79571.1 - 0.026 14.2 0.5 0.06 13.0 0.5 1.5 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 ELFV_dehydrog PF00208.21 ABA79572.1 - 2.9e-54 184.4 0.1 6.6e-52 176.6 0.0 2.2 2 0 0 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 ABA79572.1 - 6.7e-49 165.1 0.0 1.1e-48 164.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tad PF13400.6 ABA79573.1 - 5e-11 42.7 3.4 1.3e-10 41.4 3.4 1.7 1 0 0 1 1 1 1 Putative Flp pilus-assembly TadE/G-like VWA PF00092.28 ABA79573.1 - 8.4e-06 26.1 0.2 0.74 10.0 0.0 4.0 3 1 0 3 3 3 3 von Willebrand factor type A domain VWA_2 PF13519.6 ABA79573.1 - 3e-05 24.6 0.1 0.12 13.0 0.0 3.1 2 1 0 2 2 2 2 von Willebrand factor type A domain TadE PF07811.12 ABA79574.1 - 7.5e-07 29.3 0.1 1.1e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 TadE-like protein Tad PF13400.6 ABA79574.1 - 0.012 15.9 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like TadE PF07811.12 ABA79575.1 - 6.9e-06 26.2 0.1 1.2e-05 25.5 0.1 1.4 1 0 0 1 1 1 1 TadE-like protein Peptidase_M50B PF13398.6 ABA79575.1 - 0.076 12.6 0.8 7.6 6.1 0.0 2.0 1 1 1 2 2 2 0 Peptidase M50B-like Flp1_like PF16982.5 ABA79575.1 - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain TetR_C_24 PF17932.1 ABA79576.1 - 1.7e-31 108.8 1.0 2.1e-31 108.6 0.1 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 ABA79576.1 - 5.1e-13 48.6 0.2 1.4e-12 47.1 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 ABA79576.1 - 1.4e-05 25.1 0.1 2.8e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_15 PF17918.1 ABA79576.1 - 2.4e-05 25.1 5.2 4.4e-05 24.2 0.9 2.3 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 ABA79576.1 - 0.0001 22.4 0.1 0.00018 21.6 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 ABA79576.1 - 0.00026 21.0 0.2 0.0007 19.6 0.0 1.8 2 0 0 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_6 PF13977.6 ABA79576.1 - 0.013 15.8 1.8 0.013 15.8 1.8 2.6 1 1 1 3 3 3 0 BetI-type transcriptional repressor, C-terminal HTH_Tnp_1_2 PF13022.6 ABA79576.1 - 0.035 14.2 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Hemerythrin PF01814.23 ABA79576.1 - 0.052 14.2 1.4 0.084 13.5 0.7 1.6 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Homoserine_dh PF00742.19 ABA79577.1 - 1.8e-56 190.7 0.0 3.3e-56 189.9 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 ABA79577.1 - 1.1e-18 68.0 2.2 1.7e-18 67.3 2.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT PF01842.25 ABA79577.1 - 3.5e-13 49.1 0.0 8.6e-13 47.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 ABA79577.1 - 0.035 13.9 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 ACT domain DXP_reductoisom PF02670.16 ABA79577.1 - 0.043 14.5 0.8 0.12 13.1 0.5 1.8 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACT_4 PF13291.6 ABA79577.1 - 0.079 13.6 0.0 0.19 12.4 0.0 1.6 1 0 0 1 1 1 0 ACT domain PSP PF04046.16 ABA79577.1 - 0.17 11.8 0.0 12 5.8 0.0 2.5 2 0 0 2 2 2 0 PSP PE PF00934.20 ABA79577.1 - 1.5 9.2 11.4 10 6.5 8.9 2.6 2 1 0 2 2 2 0 PE family FBPase_glpX PF03320.13 ABA79578.1 - 2.5e-131 437.1 5.2 2.8e-131 437.0 5.2 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DHHA1 PF02272.19 ABA79579.1 - 1.2e-22 80.8 1.9 2.2e-22 80.0 1.9 1.5 1 0 0 1 1 1 1 DHHA1 domain RecJ_OB PF17768.1 ABA79579.1 - 5.8e-15 55.5 0.0 9.1e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 RecJ OB domain DHH PF01368.20 ABA79579.1 - 2.7e-06 27.5 0.0 4.6e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 DHH family Prok-RING_1 PF14446.6 ABA79579.1 - 0.25 11.3 0.1 0.46 10.4 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 GGDEF PF00990.21 ABA79580.1 - 8.6e-41 139.4 0.0 1.1e-40 139.0 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain 5TM-5TMR_LYT PF07694.12 ABA79580.1 - 5.7e-18 65.0 17.1 7.9e-18 64.5 17.1 1.2 1 0 0 1 1 1 1 5TMR of 5TMR-LYT GGDEF_2 PF17853.1 ABA79580.1 - 0.00017 21.8 0.9 0.0004 20.6 0.9 1.9 1 1 0 1 1 1 1 GGDEF-like domain 2-Hacid_dh_C PF02826.19 ABA79581.1 - 7.2e-53 178.6 0.0 1e-52 178.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA79581.1 - 1.2e-31 109.1 0.0 1.5e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CoA_binding_2 PF13380.6 ABA79581.1 - 0.0075 16.7 0.1 0.018 15.6 0.1 1.7 1 1 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.15 ABA79581.1 - 0.0095 16.1 0.1 0.042 14.0 0.0 2.0 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 ABA79581.1 - 0.037 14.1 0.1 0.069 13.2 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.27 ABA79581.1 - 0.05 14.2 0.9 0.11 13.1 0.9 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.12 ABA79581.1 - 0.06 12.9 0.0 0.17 11.4 0.0 1.8 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 ABA79581.1 - 0.12 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHAD PF05235.14 ABA79583.2 - 6e-38 131.1 24.3 8e-38 130.7 24.3 1.1 1 0 0 1 1 1 1 CHAD domain WXG100 PF06013.12 ABA79583.2 - 0.12 12.6 2.7 0.13 12.5 0.1 2.3 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Ribonuc_red_lgN PF00317.21 ABA79583.2 - 0.23 11.5 0.6 0.29 11.2 0.7 1.6 1 1 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain GGDEF PF00990.21 ABA79584.1 - 9.2e-41 139.3 0.0 2.4e-40 138.0 0.0 1.6 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain HNOBA PF07701.14 ABA79584.1 - 0.0012 18.3 0.0 0.045 13.2 0.0 2.1 2 0 0 2 2 2 2 Heme NO binding associated T2SSF PF00482.23 ABA79584.1 - 0.03 14.3 1.0 0.18 11.7 0.1 2.4 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F HNOB PF07700.15 ABA79585.1 - 5.1e-22 78.6 0.0 6.3e-22 78.3 0.0 1.0 1 0 0 1 1 1 1 Haem-NO-binding DUF4153 PF13687.6 ABA79586.1 - 4.3e-16 59.2 8.3 4.3e-16 59.2 8.3 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4153) HAD_2 PF13419.6 ABA79587.1 - 8.3e-25 87.9 0.0 1.4e-24 87.2 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA79587.1 - 5.9e-20 72.4 0.3 1.9e-18 67.6 0.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA79587.1 - 1.1e-17 63.8 0.4 1.1e-17 63.8 0.4 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 ABA79587.1 - 2.2e-07 31.4 0.3 3.1e-07 31.0 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3572 PF12096.8 ABA79588.1 - 1.4e-32 111.7 1.2 1.6e-32 111.6 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3572) GGDEF PF00990.21 ABA79589.1 - 1.3e-43 148.5 0.0 1.9e-43 148.0 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 ABA79589.1 - 2.8e-22 79.0 0.0 7.5e-18 64.7 0.0 2.4 2 0 0 2 2 2 2 Response regulator receiver domain Metal_resist PF13801.6 ABA79590.1 - 1.4e-25 89.9 14.6 1.4e-25 89.9 14.6 1.5 2 0 0 2 2 2 1 Heavy-metal resistance RskA PF10099.9 ABA79591.1 - 0.02 15.2 6.3 0.024 14.9 6.3 1.1 1 0 0 1 1 1 0 Anti-sigma-K factor rskA DUF3040 PF11239.8 ABA79591.1 - 0.031 14.5 0.5 0.045 14.0 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Sigma70_r2 PF04542.14 ABA79592.2 - 1.1e-17 63.5 4.1 1.5e-17 63.1 2.9 1.8 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 ABA79592.2 - 3.6e-16 58.6 0.5 7.3e-16 57.6 0.5 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA79592.2 - 6.9e-10 38.3 0.3 1.5e-09 37.2 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 ABA79592.2 - 6e-05 23.0 1.3 0.0002 21.3 1.3 2.0 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 ABA79592.2 - 0.0054 16.5 0.1 0.021 14.6 0.1 2.2 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 ABA79592.2 - 0.078 12.5 0.1 0.3 10.6 0.1 1.9 1 1 1 2 2 2 0 Bacterial regulatory proteins, luxR family EF-hand_5 PF13202.6 ABA79593.1 - 1.3e-22 78.2 7.1 1.1e-05 24.7 0.2 4.2 4 0 0 4 4 4 4 EF hand EF-hand_1 PF00036.32 ABA79593.1 - 5.2e-21 72.6 2.1 3.5e-05 23.0 0.0 4.4 4 0 0 4 4 4 4 EF hand EF-hand_6 PF13405.6 ABA79593.1 - 2.1e-17 61.5 4.2 0.00064 19.4 0.3 4.3 4 0 0 4 4 4 4 EF-hand domain EF-hand_7 PF13499.6 ABA79593.1 - 8.2e-16 58.2 0.7 2.4e-06 27.9 0.0 3.1 2 1 1 3 3 3 3 EF-hand domain pair EF-hand_8 PF13833.6 ABA79593.1 - 5e-10 39.1 4.6 0.07 13.0 0.1 4.2 4 0 0 4 4 4 3 EF-hand domain pair SPARC_Ca_bdg PF10591.9 ABA79593.1 - 2.3e-06 27.9 0.0 0.035 14.4 0.0 3.0 2 1 1 3 3 3 2 Secreted protein acidic and rich in cysteine Ca binding region Dockerin_1 PF00404.18 ABA79593.1 - 0.029 14.6 8.8 14 6.0 0.2 4.0 1 1 3 4 4 4 0 Dockerin type I domain Sporozoite_P67 PF05642.11 ABA79593.1 - 0.39 8.8 8.9 0.37 8.8 8.9 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF983 PF06170.12 ABA79594.1 - 4.1e-31 107.2 0.3 4.1e-31 107.2 0.3 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF983) zf-C4_Topoisom PF01396.19 ABA79594.1 - 0.0023 17.7 0.4 1.1 9.1 0.0 2.2 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 ABA79594.1 - 0.016 15.2 0.2 0.026 14.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 ABA79594.1 - 0.025 13.9 0.7 1.7 8.1 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 ABA79594.1 - 0.026 13.9 3.1 1.9 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 ABA79594.1 - 0.03 14.0 3.7 0.21 11.2 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 ABA79594.1 - 0.055 13.6 1.0 3.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain GtrA PF04138.14 ABA79594.1 - 0.071 13.4 0.0 0.091 13.0 0.0 1.1 1 0 0 1 1 1 0 GtrA-like protein RNHCP PF12647.7 ABA79594.1 - 0.096 12.7 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain Auto_anti-p27 PF06677.12 ABA79594.1 - 0.18 12.0 3.8 1.5 9.1 0.1 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 ABA79594.1 - 0.21 11.6 6.8 0.35 10.9 0.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.6 ABA79594.1 - 0.22 11.5 2.6 4.3 7.3 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ACC PF17848.1 ABA79594.1 - 0.23 11.5 1.5 11 6.2 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-IS66 PF13005.7 ABA79594.1 - 0.28 11.6 2.7 16 6.0 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 ABA79594.1 - 0.31 10.6 3.1 2.4 7.8 3.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 ABA79594.1 - 1 9.3 3.5 4 7.4 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 ABA79594.1 - 1.3 8.8 5.2 10 6.0 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 ABA79594.1 - 1.6 8.8 9.2 4.8 7.2 3.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rad50_zn_hook PF04423.14 ABA79594.1 - 2.9 7.8 4.2 1 9.3 0.1 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Lar_restr_allev PF14354.6 ABA79594.1 - 3.1 8.2 6.2 13 6.2 0.1 2.9 1 1 2 3 3 3 0 Restriction alleviation protein Lar NUDIX PF00293.28 ABA79595.1 - 4.9e-09 36.3 0.0 1.4e-08 34.8 0.0 1.8 1 1 0 1 1 1 1 NUDIX domain Lipocalin_2 PF08212.12 ABA79597.1 - 1.1e-06 28.7 0.0 2.6e-05 24.2 0.0 2.0 2 0 0 2 2 2 2 Lipocalin-like domain Aldo_ket_red PF00248.21 ABA79599.1 - 9.3e-64 215.4 0.0 1.1e-63 215.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family tRNA-synt_1g PF09334.11 ABA79601.1 - 7e-144 479.4 0.0 8.3e-144 479.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 ABA79601.1 - 2.3e-07 29.5 0.1 0.00048 18.5 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 ABA79601.1 - 0.00053 20.0 0.0 0.00087 19.3 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 ABA79601.1 - 0.03 13.3 0.2 1 8.2 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) Na_H_Exchanger PF00999.21 ABA79602.1 - 3.2e-49 167.7 42.8 4.4e-49 167.3 42.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family cNMP_binding PF00027.29 ABA79602.1 - 6.6e-16 58.2 0.0 1.5e-15 57.0 0.0 1.7 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_IclR PF09339.10 ABA79603.1 - 0.014 15.1 0.1 0.12 12.2 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 ABA79603.1 - 0.067 13.1 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fer4_5 PF12801.7 ABA79604.1 - 1.7e-11 43.9 16.2 2.1e-08 34.0 3.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain ABC_tran PF00005.27 ABA79605.1 - 3.2e-33 115.1 0.0 5.3e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 ABA79605.1 - 1.4e-08 34.8 0.2 2.4e-08 34.0 0.2 1.4 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 ABA79605.1 - 6.4e-08 32.8 0.0 0.012 15.5 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79605.1 - 0.00035 20.1 0.0 0.068 12.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA79605.1 - 0.00043 20.7 0.0 0.001 19.5 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 ABA79605.1 - 0.0015 17.8 0.1 0.0056 16.0 0.0 1.9 2 1 0 3 3 3 1 Zeta toxin AAA_22 PF13401.6 ABA79605.1 - 0.0051 17.1 0.0 0.035 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 ABA79605.1 - 0.011 15.8 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_15 PF13175.6 ABA79605.1 - 0.013 15.2 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 ABA79605.1 - 0.02 14.6 0.0 0.054 13.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA79605.1 - 0.022 14.7 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 ABA79605.1 - 0.025 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 ABA79605.1 - 0.045 13.7 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 ABA79605.1 - 0.047 13.7 0.0 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 ABA79605.1 - 0.051 13.3 0.1 0.13 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA79605.1 - 0.052 14.1 0.0 0.088 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 ABA79605.1 - 0.35 9.5 0.0 0.69 8.5 0.0 1.4 2 0 0 2 2 2 0 AAA domain HTH_31 PF13560.6 ABA79606.1 - 9.1e-06 25.9 0.9 1.1e-05 25.7 0.9 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 ABA79606.1 - 0.00079 19.4 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 ABA79606.1 - 0.0059 16.4 0.0 0.0074 16.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 ABA79606.1 - 0.0094 16.0 0.0 0.01 15.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 ABA79606.1 - 0.016 15.2 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Pou PF00157.17 ABA79606.1 - 0.036 14.0 0.0 0.042 13.8 0.0 1.3 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain CobD_Cbib PF03186.13 ABA79607.1 - 1.5e-97 326.1 3.1 1.7e-97 325.9 3.1 1.0 1 0 0 1 1 1 1 CobD/Cbib protein AmpE PF17113.5 ABA79607.1 - 0.22 10.9 2.0 0.2 11.0 0.3 1.6 2 0 0 2 2 2 0 Regulatory signalling modulator protein AmpE Aminotran_5 PF00266.19 ABA79608.1 - 3.5e-133 444.1 0.0 4e-133 444.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 ABA79608.1 - 3.1e-09 36.5 0.0 2.1e-06 27.1 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 ABA79608.1 - 1.3e-07 30.5 0.0 2.2e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 ABA79608.1 - 8.5e-06 25.3 1.1 1.1e-05 25.0 0.3 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 ABA79608.1 - 0.00012 21.5 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Imm48 PF15574.6 ABA79608.1 - 0.14 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 48 Yip1 PF04893.17 ABA79609.1 - 1.5e-12 47.6 21.3 2.3e-12 47.0 21.3 1.3 1 1 0 1 1 1 1 Yip1 domain Yip1 PF04893.17 ABA79610.1 - 2e-09 37.4 12.2 2.6e-09 37.0 12.2 1.1 1 0 0 1 1 1 1 Yip1 domain DUF5518 PF17647.1 ABA79610.1 - 0.0023 18.1 8.8 0.0023 18.1 8.8 2.3 2 1 1 3 3 3 1 Family of unknown function (DUF5518) DUF1282 PF06930.12 ABA79610.1 - 0.029 14.2 1.4 0.047 13.5 1.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) ABC_tran PF00005.27 ABA79611.1 - 2.8e-19 70.0 0.0 3.8e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA79611.1 - 8.9e-08 31.8 0.1 0.0056 16.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA79611.1 - 0.0002 21.3 0.0 0.022 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA79611.1 - 0.00099 18.8 0.1 0.0019 17.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA79611.1 - 0.01 15.8 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 ABA79611.1 - 0.015 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 ABA79611.1 - 0.018 14.7 0.1 0.047 13.4 0.1 1.7 1 0 0 1 1 1 0 Cytidylate kinase AAA_23 PF13476.6 ABA79611.1 - 0.026 15.0 0.0 0.05 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 ABA79611.1 - 0.032 14.7 0.3 3.9 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 ABA79611.1 - 0.041 14.1 0.0 0.053 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 ABA79611.1 - 0.042 12.5 0.0 0.058 12.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 ABA79611.1 - 0.052 13.8 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 ABA79611.1 - 0.068 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA79611.1 - 0.12 12.9 0.0 0.36 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA79611.1 - 0.14 12.2 0.1 18 5.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) YbjQ_1 PF01906.17 ABA79612.1 - 7.3e-40 135.8 3.4 8e-40 135.7 3.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding UPF0051 PF01458.17 ABA79613.2 - 3.6e-71 239.3 0.1 4.5e-71 239.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) CHIPS PF11434.8 ABA79613.2 - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Chemotaxis-inhibiting protein CHIPS GFP PF01353.22 ABA79613.2 - 0.15 11.6 0.0 0.31 10.5 0.0 1.5 1 0 0 1 1 1 0 Green fluorescent protein Aminotran_5 PF00266.19 ABA79614.1 - 1.1e-30 106.9 0.1 2.1e-17 63.1 0.0 2.2 1 1 1 2 2 2 2 Aminotransferase class-V Rrf2 PF02082.20 ABA79615.1 - 6e-27 93.8 0.2 1.1e-26 93.0 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 ABA79615.1 - 0.0015 18.2 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.7 ABA79615.1 - 0.23 11.4 1.3 0.33 10.9 0.1 1.9 3 0 0 3 3 3 0 MarR family Hydrolase_4 PF12146.8 ABA79616.1 - 8.8e-10 38.3 0.5 4.3e-08 32.7 0.1 2.1 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 ABA79616.1 - 5.7e-08 32.7 0.0 6.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 ABA79616.1 - 2.8e-07 30.4 0.5 8.9e-07 28.8 0.2 1.7 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 ABA79616.1 - 5.5e-07 29.3 0.6 0.0096 15.4 0.1 2.1 1 1 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 ABA79616.1 - 7.7e-07 29.9 0.1 1.9e-06 28.7 0.1 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 ABA79616.1 - 0.0004 20.0 0.0 0.00056 19.5 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 ABA79616.1 - 0.089 12.7 0.0 0.5 10.3 0.0 1.8 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal HD_3 PF13023.6 ABA79617.1 - 1.2e-48 165.2 0.0 1.3e-48 165.0 0.0 1.0 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 ABA79617.1 - 1.1e-14 54.6 0.0 1.4e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 ABA79617.1 - 0.0016 18.7 0.2 0.0047 17.1 0.2 1.8 2 0 0 2 2 2 1 HD domain Iso_dh PF00180.20 ABA79618.1 - 1.7e-70 237.9 0.0 2e-70 237.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase YitT_membrane PF02588.15 ABA79619.1 - 8.1e-26 90.7 10.4 1.1e-25 90.3 10.4 1.0 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABC2_membrane_5 PF13346.6 ABA79619.1 - 0.0059 16.2 5.1 0.01 15.4 5.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein GTP_EFTU PF00009.27 ABA79620.1 - 1.7e-54 184.4 0.0 5e-54 182.8 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 ABA79620.1 - 6e-20 71.1 0.0 1.1e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 ABA79620.1 - 1.8e-10 41.0 0.7 5.5e-10 39.5 0.3 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 ABA79620.1 - 2.8e-08 33.8 0.1 4.6e-07 29.9 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase Septin PF00735.18 ABA79620.1 - 0.0017 17.7 0.1 0.016 14.5 0.0 2.0 2 0 0 2 2 2 1 Septin FeoB_N PF02421.18 ABA79620.1 - 0.012 15.2 0.0 0.16 11.5 0.0 2.6 3 1 0 3 3 3 0 Ferrous iron transport protein B AIG1 PF04548.16 ABA79620.1 - 0.012 15.0 0.0 0.031 13.6 0.0 1.6 2 0 0 2 2 2 0 AIG1 family Dynamin_N PF00350.23 ABA79620.1 - 0.026 14.6 0.0 0.28 11.2 0.0 2.2 1 1 1 2 2 2 0 Dynamin family SRPRB PF09439.10 ABA79620.1 - 0.12 11.9 0.0 0.32 10.4 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GATase_4 PF13230.6 ABA79621.1 - 8.9e-15 54.3 0.0 1.1e-13 50.8 0.0 2.0 1 1 1 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 ABA79621.1 - 1.6e-10 41.3 0.0 2.6e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF1330 PF07045.11 ABA79622.1 - 6.9e-34 116.1 0.2 7.5e-34 115.9 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) tRNA-synt_2c PF01411.19 ABA79623.1 - 2.1e-220 733.0 0.0 2.5e-220 732.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 ABA79623.1 - 4.6e-19 69.2 5.5 8.8e-19 68.3 5.5 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 ABA79623.1 - 2e-14 53.4 0.2 5.7e-14 51.9 0.2 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Leu_zip PF15294.6 ABA79623.1 - 0.027 14.0 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Leucine zipper ZapB PF06005.12 ABA79623.1 - 0.031 14.7 0.4 0.08 13.4 0.4 1.7 1 0 0 1 1 1 0 Cell division protein ZapB Seryl_tRNA_N PF02403.22 ABA79623.1 - 0.046 13.9 0.2 0.15 12.3 0.2 1.8 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain JIP_LZII PF16471.5 ABA79623.1 - 0.053 13.7 0.2 0.16 12.2 0.2 1.8 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II RecA PF00154.21 ABA79624.1 - 1.5e-146 486.8 2.3 1.8e-146 486.5 2.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 ABA79624.1 - 2.2e-11 43.5 0.7 5.2e-11 42.3 0.6 1.5 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 ABA79624.1 - 1.8e-08 34.0 1.2 1.6e-06 27.7 1.2 2.6 1 1 0 1 1 1 1 KaiC ATPase_2 PF01637.18 ABA79624.1 - 1.6e-05 25.0 0.0 3.3e-05 23.9 0.0 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 ABA79624.1 - 0.00079 19.0 0.2 0.04 13.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA79624.1 - 0.013 15.8 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 ABA79624.1 - 0.026 14.3 0.0 0.042 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 ABA79624.1 - 0.032 14.6 0.0 0.052 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 ABA79624.1 - 0.048 14.2 0.0 0.092 13.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 ABA79624.1 - 0.087 13.3 0.1 0.22 12.0 0.1 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 ABA79624.1 - 0.11 12.5 0.0 0.31 11.1 0.0 1.8 2 1 0 2 2 2 0 AAA domain CobU PF02283.16 ABA79624.1 - 0.15 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_35 PF14516.6 ABA79624.1 - 0.16 10.8 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain HATPase_c PF02518.26 ABA79626.2 - 8.3e-21 74.6 0.0 1.6e-20 73.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA79626.2 - 6.2e-18 65.0 0.0 1.2e-17 64.1 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 ABA79626.2 - 1.6e-08 34.5 3.1 1.7e-08 34.4 0.2 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 ABA79626.2 - 2.6e-05 24.4 0.6 0.17 12.2 0.2 3.2 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 ABA79626.2 - 0.00035 20.5 0.1 1.3 9.2 0.0 3.9 3 0 0 3 3 3 1 PAS domain PAS_9 PF13426.7 ABA79626.2 - 0.00059 20.1 0.0 0.75 10.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain HPTransfase PF10090.9 ABA79626.2 - 0.0035 17.1 0.1 0.011 15.5 0.1 1.9 1 1 0 1 1 1 1 Histidine phosphotransferase C-terminal domain PAS PF00989.25 ABA79626.2 - 0.028 14.4 0.0 2.9 7.9 0.0 3.5 3 1 0 3 3 3 0 PAS fold HATPase_c_3 PF13589.6 ABA79626.2 - 0.091 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_holin_3_7 PF05449.11 ABA79626.2 - 0.2 11.7 3.1 0.47 10.5 3.1 1.5 1 0 0 1 1 1 0 Putative 3TM holin, Phage_holin_3 Methyltr_RsmB-F PF01189.17 ABA79627.1 - 8.5e-27 94.1 0.0 1.2e-26 93.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 ABA79627.1 - 0.0022 18.4 0.0 0.0038 17.7 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 ABA79627.1 - 0.062 14.0 0.0 0.29 11.8 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 ABA79627.1 - 0.065 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain DeoRC PF00455.22 ABA79628.1 - 1.1e-51 175.0 0.3 1.4e-51 174.6 0.3 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 ABA79628.1 - 7.2e-17 60.9 1.1 1.8e-16 59.6 1.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 ABA79628.1 - 5.5e-07 29.4 0.1 1.1e-06 28.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 ABA79628.1 - 3.9e-05 23.2 0.4 9.5e-05 22.0 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 ABA79628.1 - 0.0004 20.2 1.6 0.0018 18.2 0.5 2.6 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.7 ABA79628.1 - 0.0018 18.3 1.7 0.0037 17.3 0.4 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA79628.1 - 0.0032 17.4 3.6 0.0033 17.4 0.2 2.5 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR PF01047.22 ABA79628.1 - 0.0033 17.3 0.9 0.0057 16.6 0.1 1.8 2 0 0 2 2 2 1 MarR family DUF2250 PF10007.9 ABA79628.1 - 0.015 15.4 0.0 0.035 14.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 ABA79628.1 - 0.017 15.4 0.1 0.036 14.4 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 ABA79628.1 - 0.035 13.7 0.1 0.084 12.5 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 ABA79628.1 - 0.061 13.2 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit TrkA_N PF02254.18 ABA79628.1 - 0.069 13.4 0.4 0.24 11.6 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain RES PF08808.11 ABA79629.1 - 1.3e-30 106.4 4.0 2.1e-30 105.7 4.0 1.3 1 0 0 1 1 1 1 RES domain DUF2384 PF09722.10 ABA79630.1 - 6.5e-13 48.5 0.7 6.5e-13 48.5 0.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2384) DUF475 PF04332.15 ABA79631.1 - 4.8e-107 358.1 10.5 5.8e-107 357.9 10.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 ABA79631.1 - 3.7e-24 85.4 8.9 2e-23 83.0 8.9 2.1 1 1 0 1 1 1 1 Integral membrane protein TerC family ACR_tran PF00873.19 ABA79632.1 - 4.9e-141 471.4 8.2 1.3e-140 470.0 8.2 1.6 1 1 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 ABA79632.1 - 1.1e-07 31.4 9.1 1.1e-07 31.4 9.1 2.7 3 0 0 3 3 3 2 Protein export membrane protein HlyD_3 PF13437.6 ABA79633.1 - 5.4e-12 46.3 0.4 1.4e-06 28.9 0.1 2.5 2 1 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 ABA79633.1 - 7.9e-10 38.3 0.2 8.9e-09 34.9 0.2 2.1 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 ABA79633.1 - 9.8e-09 34.9 3.7 9.5e-07 28.5 0.1 3.2 3 0 0 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 ABA79633.1 - 0.00014 21.6 0.2 0.028 14.3 0.0 2.6 2 0 0 2 2 2 1 Biotin-requiring enzyme Peptidase_M23 PF01551.22 ABA79633.1 - 0.0034 17.6 0.4 0.45 10.8 0.0 2.9 2 1 0 2 2 2 1 Peptidase family M23 PTS_EIIA_1 PF00358.20 ABA79633.1 - 0.062 13.1 0.3 1.1 9.0 0.0 2.8 3 1 1 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SOGA PF11365.8 ABA79633.1 - 0.13 13.4 0.1 0.22 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein SOGA GAS PF13851.6 ABA79633.1 - 0.27 10.6 0.1 0.37 10.1 0.1 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cation_efflux PF01545.21 ABA79635.1 - 6.3e-36 124.0 13.9 8.2e-36 123.6 13.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 ABA79635.1 - 5.7e-21 74.4 3.9 8.6e-21 73.9 3.9 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Peptidase_U32 PF01136.19 ABA79636.1 - 3.7e-24 85.2 0.0 4.5e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 Peptidase_U32 PF01136.19 ABA79637.1 - 1.1e-62 211.3 0.0 1.4e-62 210.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 UPF0697 PF15117.6 ABA79637.1 - 0.0011 19.0 0.0 0.0018 18.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0697 PA PF02225.22 ABA79637.1 - 0.16 12.0 1.1 0.32 11.1 0.7 1.8 1 1 0 1 1 1 0 PA domain SCP2 PF02036.17 ABA79638.1 - 2.8e-11 43.8 0.0 3.8e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family MDMPI_C PF07398.11 ABA79638.1 - 0.039 14.8 1.3 0.093 13.6 1.3 1.8 1 1 0 1 1 1 0 MDMPI C-terminal domain UbiD PF01977.16 ABA79639.1 - 4.4e-151 503.4 0.0 5e-151 503.2 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Flavoprotein PF02441.19 ABA79640.1 - 2.6e-22 79.3 0.5 3.2e-22 79.0 0.5 1.1 1 0 0 1 1 1 1 Flavoprotein Binary_toxB_2 PF17475.2 ABA79640.1 - 0.002 17.9 0.2 0.0025 17.6 0.2 1.2 1 0 0 1 1 1 1 Clostridial binary toxin B/anthrax toxin PA domain 2 DAO PF01266.24 ABA79641.1 - 1.9e-66 225.1 3.8 2.2e-66 224.9 3.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.15 ABA79641.1 - 0.00093 17.9 0.0 0.0071 14.9 0.0 2.0 2 1 0 2 2 2 1 Malate:quinone oxidoreductase (Mqo) NAD_binding_8 PF13450.6 ABA79641.1 - 0.0013 19.0 0.3 0.0031 17.7 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 ABA79641.1 - 0.0073 15.6 0.2 0.088 12.1 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 ABA79641.1 - 0.01 15.1 0.2 1.1 8.5 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 ABA79641.1 - 0.026 13.7 0.0 0.14 11.4 0.0 1.9 2 0 0 2 2 2 0 Thi4 family FAD_binding_2 PF00890.24 ABA79641.1 - 0.063 12.4 0.8 0.13 11.3 0.6 1.8 1 1 1 2 2 2 0 FAD binding domain AAA_33 PF13671.6 ABA79642.1 - 1.6e-23 83.5 0.0 3.1e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain APH PF01636.23 ABA79642.1 - 3.1e-08 33.8 7.7 3.1e-08 33.8 7.7 2.3 2 1 0 2 2 2 1 Phosphotransferase enzyme family AAA_16 PF13191.6 ABA79642.1 - 0.00016 22.1 1.1 0.00087 19.7 0.2 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 ABA79642.1 - 0.00047 20.7 0.0 0.0025 18.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 ABA79642.1 - 0.0034 16.7 0.0 0.0061 15.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.27 ABA79642.1 - 0.18 12.4 0.0 0.31 11.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 ABA79642.1 - 0.22 11.4 0.1 0.38 10.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Phasin_2 PF09361.10 ABA79643.1 - 8.2e-07 29.2 0.5 9.9e-07 29.0 0.5 1.1 1 0 0 1 1 1 1 Phasin protein Tape_meas_lam_C PF09718.10 ABA79643.1 - 0.056 13.6 0.3 0.31 11.2 0.1 1.9 2 0 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Exo_endo_phos PF03372.23 ABA79644.1 - 8.7e-11 41.8 0.3 2.3e-10 40.4 0.3 1.6 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family PLDc_2 PF13091.6 ABA79645.1 - 2.2e-38 131.1 0.0 5.8e-22 78.0 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 ABA79645.1 - 8.4e-09 35.3 0.7 0.0042 17.2 0.0 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif Cytochrom_C_2 PF01322.20 ABA79646.1 - 1.4e-31 109.9 0.2 2.1e-31 109.4 0.2 1.2 1 0 0 1 1 1 1 Cytochrome C' Ni_hydr_CYTB PF01292.20 ABA79647.1 - 1.2e-24 86.9 10.1 1.6e-24 86.5 10.1 1.2 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4079 PF13301.6 ABA79647.1 - 0.38 10.9 9.0 0.16 12.1 1.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4079) DUF4405 PF14358.6 ABA79647.1 - 0.71 10.5 12.2 1.6 9.3 4.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) SNN_transmemb PF09049.10 ABA79647.1 - 8.6 6.4 7.8 0.31 11.0 1.4 1.9 2 0 0 2 2 2 0 Stannin transmembrane Aldolase_II PF00596.21 ABA79648.1 - 1.4e-43 149.0 1.6 1.6e-43 148.8 1.6 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Hydrolase_4 PF12146.8 ABA79649.1 - 2.2e-09 37.0 0.0 3.5e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 ABA79649.1 - 1.4e-06 28.1 0.0 2.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 ABA79649.1 - 1.3e-05 25.9 17.3 1.3e-05 25.9 17.3 2.6 1 1 1 2 2 2 1 Alpha/beta hydrolase family PAF-AH_p_II PF03403.13 ABA79649.1 - 0.0015 17.1 0.0 0.0021 16.7 0.0 1.1 1 0 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II AXE1 PF05448.12 ABA79649.1 - 0.15 10.7 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) tRNA-synt_2 PF00152.20 ABA79650.1 - 5.5e-32 111.1 0.0 7.2e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 ABA79650.1 - 0.0014 18.1 0.0 0.023 14.2 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Elong-fact-P_C PF09285.11 ABA79651.1 - 1.4e-21 76.0 0.2 2.9e-21 75.0 0.2 1.6 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP PF01132.20 ABA79651.1 - 4.3e-18 65.1 0.5 8.7e-18 64.1 0.5 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain EFP_N PF08207.12 ABA79651.1 - 4e-17 62.0 0.0 6.8e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Mannitol_dh_C PF08125.13 ABA79652.2 - 1e-78 264.3 0.0 1.4e-78 263.8 0.0 1.1 1 0 0 1 1 1 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 ABA79652.2 - 2.5e-39 134.8 0.0 3.9e-39 134.2 0.0 1.3 1 0 0 1 1 1 1 Mannitol dehydrogenase Rossmann domain adh_short_C2 PF13561.6 ABA79653.1 - 2.5e-54 184.3 5.6 2.9e-54 184.1 5.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA79653.1 - 2.3e-46 157.7 1.1 3.4e-46 157.2 1.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 ABA79653.1 - 1.8e-06 27.3 0.3 2.1e-06 27.1 0.3 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 ABA79653.1 - 1.2e-05 25.0 0.8 1.4e-05 24.7 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 ABA79653.1 - 0.003 17.5 3.3 0.021 14.8 3.3 2.0 1 1 0 1 1 1 1 KR domain KduI PF04962.12 ABA79654.1 - 4.7e-31 108.1 0.1 6.4e-31 107.6 0.1 1.1 1 0 0 1 1 1 1 KduI/IolB family Cupin_3 PF05899.12 ABA79654.1 - 0.12 12.1 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_2 PF07883.11 ABA79654.1 - 0.46 10.2 0.1 0.46 10.2 0.1 2.5 3 1 0 3 3 3 0 Cupin domain Cupin_2 PF07883.11 ABA79655.1 - 1.8e-11 43.6 0.4 2.4e-11 43.2 0.4 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 ABA79655.1 - 0.00078 19.4 0.2 0.001 19.0 0.2 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 ABA79655.1 - 0.031 13.9 0.0 0.057 13.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_7 PF12973.7 ABA79655.1 - 0.046 13.6 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Ectoine_synth PF06339.12 ABA79655.1 - 0.16 12.1 0.0 0.18 12.0 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase DctM PF06808.12 ABA79656.1 - 1.2e-107 360.4 53.4 1.3e-107 360.2 53.4 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CPP1-like PF11833.8 ABA79656.1 - 0.0025 17.5 3.7 0.0025 17.5 3.7 2.9 3 0 0 3 3 3 1 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DctQ PF04290.12 ABA79657.1 - 2.9e-28 98.4 10.4 3.8e-28 98.0 10.4 1.2 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component LGT PF01790.18 ABA79657.1 - 0.056 12.7 5.1 0.078 12.2 5.1 1.1 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase DctP PF03480.13 ABA79658.1 - 3.3e-93 312.1 0.0 3.8e-93 311.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 UxaC PF02614.14 ABA79659.1 - 4.4e-74 250.0 0.0 5.5e-74 249.7 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase FCD PF07729.12 ABA79660.1 - 9.9e-20 71.2 15.0 1.8e-19 70.4 15.0 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 ABA79660.1 - 2.4e-16 59.1 0.1 1.9e-15 56.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family STAS_2 PF13466.6 ABA79660.1 - 1.1e-06 28.8 2.1 1.1e-06 28.8 2.1 1.8 2 0 0 2 2 2 1 STAS domain PaaX PF07848.12 ABA79660.1 - 0.013 15.7 0.2 0.39 11.0 0.0 2.4 2 0 0 2 2 2 0 PaaX-like protein DUF416 PF04222.12 ABA79660.1 - 0.092 12.2 0.0 0.75 9.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF416) HisKA PF00512.25 ABA79662.1 - 5.1e-20 71.3 2.9 5.1e-20 71.3 2.9 3.0 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 ABA79662.1 - 1.1e-18 67.7 0.0 1.8e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 ABA79662.1 - 1.1e-12 48.2 3.5 1.1e-12 48.1 0.2 2.6 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 ABA79662.1 - 7.5e-05 22.7 0.0 0.00019 21.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 ABA79662.1 - 0.00034 20.5 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 ABA79662.1 - 0.013 15.4 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA79662.1 - 0.092 12.7 0.0 0.26 11.2 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SmpB PF01668.18 ABA79662.1 - 0.12 12.2 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 SmpB protein TMF_DNA_bd PF12329.8 ABA79662.1 - 0.17 11.9 1.6 7.2 6.7 0.1 2.7 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding Oxidored_q6 PF01058.22 ABA79663.1 - 3.9e-31 107.6 0.0 5.8e-31 107.0 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.6 ABA79663.1 - 2.4e-20 72.7 4.9 2.4e-20 72.7 4.9 1.8 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal NiFeSe_Hases PF00374.19 ABA79664.1 - 5.7e-71 239.9 0.0 3.3e-50 171.4 0.0 3.9 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Sua5_yciO_yrdC PF01300.18 ABA79665.1 - 5.2e-46 156.4 0.0 7.5e-46 155.9 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 ABA79665.1 - 1.9e-30 104.3 15.4 8.9e-19 67.0 4.2 2.7 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 ABA79665.1 - 8.2e-29 100.3 1.5 1.3e-28 99.6 1.5 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 ABA79665.1 - 3.7e-15 56.1 0.0 7e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase DZR PF12773.7 ABA79665.1 - 0.005 16.8 6.8 0.57 10.2 0.4 2.4 2 0 0 2 2 2 2 Double zinc ribbon FGGY_C PF02782.16 ABA79665.1 - 0.0066 16.2 2.3 0.012 15.4 2.3 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain PhnG PF06754.12 ABA79665.1 - 0.34 10.8 2.8 1.2 9.0 0.0 3.2 4 0 0 4 4 4 0 Phosphonate metabolism protein PhnG Zn-ribbon_8 PF09723.10 ABA79665.1 - 0.7 10.1 11.0 2.5 8.3 3.4 3.4 2 1 1 3 3 3 0 Zinc ribbon domain zf-TFIIB PF13453.6 ABA79665.1 - 9 5.7 10.0 0.6 9.5 0.7 2.6 2 1 0 2 2 2 0 Transcription factor zinc-finger NiFe_hyd_SSU_C PF14720.6 ABA79666.1 - 3.1e-32 110.7 5.1 3.1e-32 110.7 5.1 2.2 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 ABA79666.1 - 1.4e-28 99.3 1.5 2.2e-28 98.7 1.5 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 ABA79666.1 - 0.0029 17.4 0.1 0.0029 17.4 0.1 2.9 2 1 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.19 ABA79667.1 - 2.3e-227 755.9 0.0 2.6e-227 755.7 0.0 1.0 1 0 0 1 1 1 1 Nickel-dependent hydrogenase HupE_UreJ PF04955.12 ABA79668.1 - 4.6e-48 163.0 37.0 5.5e-48 162.8 37.0 1.0 1 0 0 1 1 1 1 HupE / UreJ protein HycI PF01750.18 ABA79670.1 - 7.3e-41 139.0 0.0 8.7e-41 138.8 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease HupF_HypC PF01455.18 ABA79671.1 - 4.8e-13 49.0 0.1 6.2e-13 48.7 0.1 1.1 1 0 0 1 1 1 1 HupF/HypC family HyaE PF07449.11 ABA79672.1 - 3.7e-31 107.3 0.0 4.3e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE HupH_C PF04809.13 ABA79673.1 - 5e-56 187.5 0.4 9.4e-49 164.0 0.1 2.4 2 1 0 2 2 2 2 HupH hydrogenase expression protein, C-terminal conserved region NiFe-hyd_HybE PF11939.8 ABA79674.1 - 1e-54 184.6 0.1 1.3e-54 184.2 0.1 1.1 1 0 0 1 1 1 1 [NiFe]-hydrogenase assembly, chaperone, HybE Rubredoxin PF00301.20 ABA79674.1 - 5.4e-20 71.2 4.0 5.4e-20 71.2 4.0 1.6 2 0 0 2 2 2 1 Rubredoxin PHD_4 PF16866.5 ABA79674.1 - 0.0043 17.1 1.0 0.0091 16.1 1.0 1.5 1 1 0 1 1 1 1 PHD-finger zf-RanBP PF00641.18 ABA79674.1 - 0.05 12.9 2.9 0.5 9.7 0.3 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HypA PF01155.19 ABA79676.1 - 3.3e-27 94.7 0.0 3.6e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 ABA79676.1 - 0.0084 16.4 0.4 0.015 15.6 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon DZR PF12773.7 ABA79676.1 - 0.028 14.4 0.1 0.036 14.1 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon Prim_Zn_Ribbon PF08273.12 ABA79676.1 - 0.053 13.8 1.7 1.7 9.0 0.8 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-IS66 PF13005.7 ABA79676.1 - 0.12 12.8 1.2 0.72 10.3 0.2 2.5 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 cobW PF02492.19 ABA79677.1 - 4e-35 121.0 0.0 5e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 ABA79677.1 - 0.018 15.0 0.1 0.11 12.4 0.1 2.3 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 ABA79677.1 - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.26 ABA79678.1 - 2.8e-41 141.0 0.0 4.7e-41 140.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 ABA79678.1 - 4.1e-24 84.9 0.0 7.9e-24 84.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 ABA79678.1 - 2.7e-18 66.4 0.0 1.5e-17 64.0 0.0 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA79678.1 - 3.4e-12 46.0 2.6 8.8e-12 44.6 2.6 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 ABA79678.1 - 0.0016 18.4 0.0 0.011 15.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) HTH_50 PF18024.1 ABA79678.1 - 0.0082 15.7 0.1 0.02 14.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain IstB_IS21 PF01695.17 ABA79678.1 - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.29 ABA79678.1 - 0.14 12.6 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_30 PF13556.6 ABA79678.1 - 0.63 9.9 4.0 0.24 11.2 0.3 2.3 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HupF_HypC PF01455.18 ABA79679.1 - 9.8e-25 86.5 0.3 9.8e-25 86.5 0.3 1.4 2 0 0 2 2 2 1 HupF/HypC family HypD PF01924.16 ABA79680.1 - 9.8e-150 498.5 0.0 1.1e-149 498.3 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Halo_GVPC PF05465.13 ABA79680.1 - 2.8 8.3 9.3 0.32 11.3 0.8 2.8 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat AIRS_C PF02769.22 ABA79681.1 - 3.6e-27 95.4 5.4 6.8e-27 94.5 5.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 ABA79681.1 - 2.8e-16 60.0 1.6 2.8e-16 60.0 1.6 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain GGDEF_2 PF17853.1 ABA79681.1 - 0.13 12.6 2.7 0.17 12.1 1.0 2.1 2 1 0 2 2 2 0 GGDEF-like domain Rhodanese PF00581.20 ABA79682.1 - 2.6e-07 31.1 0.0 3.3e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Response_reg PF00072.24 ABA79683.1 - 2.2e-15 56.8 0.0 3.1e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 ABA79683.1 - 0.0056 16.2 0.1 0.017 14.7 0.1 1.8 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family B12-binding PF02310.19 ABA79683.1 - 0.0074 16.3 0.0 0.052 13.6 0.0 2.0 1 1 1 2 2 2 1 B12 binding domain PAS_4 PF08448.10 ABA79684.1 - 7.8e-33 113.0 9.1 2.6e-12 47.0 0.2 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 ABA79684.1 - 1.4e-25 89.5 0.0 7.6e-12 45.4 0.0 3.1 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.7 ABA79684.1 - 1.9e-24 86.0 0.0 1.4e-18 67.1 0.0 4.4 3 1 0 3 3 3 3 PAS fold PAS PF00989.25 ABA79684.1 - 9.3e-18 64.3 0.0 1.1e-08 35.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 ABA79684.1 - 2e-17 63.7 0.0 3.9e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 ABA79684.1 - 2.7e-13 49.6 0.1 1.9e-05 24.6 0.0 4.0 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 ABA79684.1 - 3.1e-13 49.9 0.0 6e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 ABA79684.1 - 5.6e-05 23.1 2.6 5.8e-05 23.0 0.5 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 ABA79684.1 - 0.0012 19.1 0.0 0.031 14.6 0.0 2.9 3 0 0 3 3 3 1 PAS fold OKR_DC_1_N PF03709.15 ABA79684.1 - 0.015 15.5 0.0 0.037 14.3 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HemolysinCabind PF00353.19 ABA79685.1 - 6.4e-28 96.4 100.3 3.6e-09 36.4 10.5 5.7 2 2 4 6 6 6 6 RTX calcium-binding nonapeptide repeat (4 copies) Glyco_hydro_16 PF00722.21 ABA79685.1 - 8.8e-15 54.6 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 Epimerase PF01370.21 ABA79686.1 - 7.9e-50 169.6 0.0 9.4e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA79686.1 - 1.8e-48 165.7 0.0 5.6e-48 164.0 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 ABA79686.1 - 1.5e-09 37.3 0.0 3.4e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 ABA79686.1 - 2e-09 36.9 0.0 2.6e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 ABA79686.1 - 5.7e-09 35.5 0.0 8e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 ABA79686.1 - 6.4e-06 25.5 0.0 6.7e-05 22.2 0.0 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.10 ABA79686.1 - 0.032 14.1 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 KR domain adh_short PF00106.25 ABA79686.1 - 0.12 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Glyco_trans_4_4 PF13579.6 ABA79686.1 - 0.23 11.9 7.3 1 9.8 0.4 2.4 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 ABA79687.1 - 7.6e-20 71.1 0.1 2.3e-19 69.5 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA79687.1 - 0.00017 22.0 0.0 0.00042 20.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 ABA79688.1 - 3e-20 72.4 0.2 7.5e-20 71.1 0.2 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA79688.1 - 0.012 15.6 0.0 0.032 14.2 0.0 1.9 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 ABA79689.1 - 1.5e-21 76.5 0.3 6.3e-21 74.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA79689.1 - 0.00068 20.1 0.0 0.0018 18.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 ABA79689.1 - 0.18 11.3 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 ABA79690.1 - 2.4e-17 63.0 0.0 5.6e-17 61.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA79690.1 - 1.1e-16 61.4 0.3 1.5e-15 57.8 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 ABA79690.1 - 6.8e-14 52.6 12.1 6.8e-14 52.6 12.1 2.6 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 ABA79690.1 - 1.1e-13 51.6 0.5 4.9e-13 49.4 0.4 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 ABA79690.1 - 5.5e-09 36.3 0.0 1.1e-08 35.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase PF01370.21 ABA79691.1 - 4.1e-48 163.9 0.0 6.8e-48 163.2 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA79691.1 - 9.8e-46 156.7 0.0 3.9e-45 154.7 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 ABA79691.1 - 1.3e-14 54.0 0.0 5.1e-14 52.1 0.0 1.9 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 ABA79691.1 - 4e-14 52.3 0.0 7.4e-14 51.4 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 ABA79691.1 - 1.3e-09 37.5 0.0 5.6e-09 35.5 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 ABA79691.1 - 1.6e-07 30.8 0.0 2.8e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 ABA79691.1 - 6.4e-05 22.9 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 KR domain adh_short PF00106.25 ABA79691.1 - 7.7e-05 22.2 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 ABA79691.1 - 0.0018 18.2 0.2 0.0031 17.4 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 ABA79692.1 - 3.3e-50 170.8 0.4 3.1e-49 167.6 0.4 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA79692.1 - 8.6e-42 143.7 0.0 2e-20 73.5 0.0 2.1 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 ABA79692.1 - 1e-20 73.9 0.0 2e-17 63.1 0.0 2.1 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 ABA79692.1 - 1.1e-14 54.8 0.3 6.3e-14 52.3 0.2 2.0 2 0 0 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 ABA79692.1 - 1.5e-09 37.4 0.0 4.1e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NmrA PF05368.13 ABA79692.1 - 1.9e-09 37.4 0.0 4.5e-07 29.7 0.0 2.1 2 0 0 2 2 2 2 NmrA-like family NAD_binding_4 PF07993.12 ABA79692.1 - 4.3e-09 35.9 0.0 2.8e-06 26.7 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 ABA79692.1 - 2.8e-05 23.7 0.2 0.00051 19.6 0.1 2.8 2 1 0 2 2 2 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 ABA79692.1 - 6.9e-05 22.1 0.1 0.02 14.0 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 ABA79692.1 - 8.4e-05 22.8 0.2 0.00017 21.9 0.1 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 ABA79692.1 - 0.00098 19.1 0.5 0.018 15.0 0.5 2.5 1 1 0 1 1 1 1 KR domain Ldh_1_N PF00056.23 ABA79692.1 - 0.0023 18.0 0.0 0.0042 17.2 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.18 ABA79692.1 - 0.034 14.4 0.1 0.075 13.3 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 ABA79692.1 - 0.12 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 ABA79693.1 - 2.2e-17 63.2 0.0 4.5e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA79693.1 - 3.6e-11 42.9 0.3 1.4e-10 41.0 0.1 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain F420_oxidored PF03807.17 ABA79693.1 - 0.00031 21.3 0.2 0.00061 20.3 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 ABA79693.1 - 0.00039 20.4 0.1 0.0007 19.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N_2 PF13602.6 ABA79693.1 - 0.00094 20.2 0.0 0.0022 19.0 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.19 ABA79693.1 - 0.0028 16.9 0.2 0.0034 16.7 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.19 ABA79693.1 - 0.0041 16.5 0.1 0.0079 15.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 ABA79693.1 - 0.07 12.4 0.4 0.11 11.8 0.4 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 ABA79693.1 - 0.078 12.6 0.1 0.19 11.4 0.1 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 ABA79693.1 - 0.081 13.1 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 ABA79693.1 - 0.085 12.7 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 ABA79693.1 - 0.1 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 ABA79693.1 - 0.14 11.4 0.1 0.18 11.0 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.22 ABA79694.1 - 4e-19 69.6 0.1 5.9e-19 69.1 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 ABA79694.1 - 6.3e-09 35.9 0.0 1.1e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 ABA79694.1 - 0.0007 20.2 0.5 0.0011 19.6 0.5 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 ABA79694.1 - 0.001 19.6 0.4 0.0019 18.8 0.4 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Oxidoreduct_C PF16490.5 ABA79694.1 - 0.016 14.9 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain TrkA_N PF02254.18 ABA79694.1 - 0.08 13.2 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 ABA79694.1 - 0.23 11.0 0.0 0.33 10.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ku PF02735.16 ABA79695.1 - 4.1e-29 101.7 0.0 5.2e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain Ku PF02735.16 ABA79696.1 - 4.1e-27 95.2 0.0 5.2e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain DUF2939 PF11159.8 ABA79696.1 - 0.0082 16.5 1.1 6.9 7.2 0.0 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2939) DUF4148 PF13663.6 ABA79696.1 - 0.071 13.3 2.0 0.17 12.1 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) TcpS PF17456.2 ABA79696.1 - 0.2 11.7 0.0 0.36 10.9 0.0 1.3 1 0 0 1 1 1 0 Toxin-coregulated pilus protein S HlyIII PF03006.20 ABA79697.1 - 8.9e-25 87.7 14.0 1.1e-24 87.5 14.0 1.1 1 0 0 1 1 1 1 Haemolysin-III related DUF1810 PF08837.11 ABA79698.1 - 1.1e-52 177.5 0.0 1.2e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1810) Sigma54_DBD PF04552.13 ABA79699.1 - 1.6e-58 196.9 0.1 2.4e-58 196.3 0.1 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 ABA79699.1 - 4.8e-39 134.1 0.0 9.5e-39 133.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 ABA79699.1 - 1.2e-15 57.0 4.8 2.1e-15 56.3 4.8 1.4 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) HTH_38 PF13936.6 ABA79699.1 - 0.001 18.8 0.0 0.095 12.5 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain QslA_E PF18226.1 ABA79699.1 - 0.033 14.1 1.2 0.088 12.7 1.2 1.7 1 0 0 1 1 1 0 LasR-specific antiactivator QslA chain E HTH_Crp_2 PF13545.6 ABA79699.1 - 0.056 13.4 2.6 4 7.5 0.1 2.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain NifW PF03206.14 ABA79700.1 - 6.4e-33 113.2 0.0 7.2e-33 113.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogen fixation protein NifW TPR_14 PF13428.6 ABA79700.1 - 0.94 10.5 5.2 12 7.1 2.7 2.5 1 1 1 2 2 2 0 Tetratricopeptide repeat HMGL-like PF00682.19 ABA79701.2 - 2.7e-90 302.5 5.6 3.4e-90 302.2 5.6 1.1 1 0 0 1 1 1 1 HMGL-like Aminotran_5 PF00266.19 ABA79702.2 - 3e-83 279.8 0.0 3.6e-83 279.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 ABA79702.2 - 5.8e-07 29.1 0.1 8.5e-07 28.5 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 ABA79702.2 - 5.9e-07 29.0 0.0 1.1e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 ABA79702.2 - 0.051 12.1 0.0 0.071 11.6 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF3117 PF11314.8 ABA79702.2 - 0.065 13.0 0.0 0.22 11.4 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3117) NifU_N PF01592.16 ABA79703.1 - 6.9e-35 120.0 0.0 9.3e-35 119.6 0.0 1.2 1 0 0 1 1 1 1 NifU-like N terminal domain NifU PF01106.17 ABA79703.1 - 1.2e-18 67.0 0.2 2.2e-18 66.1 0.2 1.4 1 0 0 1 1 1 1 NifU-like domain AAA_lid_2 PF17863.1 ABA79703.1 - 0.28 11.0 6.2 1.2 9.0 3.3 2.7 1 1 1 2 2 2 0 AAA lid domain Fe-S_biosyn PF01521.20 ABA79704.1 - 1.1e-21 77.1 0.0 1.2e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis NifQ PF04891.12 ABA79705.1 - 1.2e-49 168.8 0.3 1.5e-49 168.4 0.3 1.1 1 0 0 1 1 1 1 NifQ Fer4 PF00037.27 ABA79706.1 - 4.7e-12 45.2 16.8 6.2e-06 25.8 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 ABA79706.1 - 1.9e-10 41.2 10.7 3.3e-10 40.4 10.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA79706.1 - 2.4e-10 40.0 16.1 1e-05 25.4 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 ABA79706.1 - 8.6e-09 35.4 27.3 2.6e-07 30.7 13.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA79706.1 - 1.1e-08 35.2 11.5 2e-08 34.3 11.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA79706.1 - 2e-08 33.8 12.3 0.00046 20.1 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 ABA79706.1 - 4.9e-08 33.8 7.3 6.7e-08 33.4 7.3 1.2 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 ABA79706.1 - 2.4e-07 31.2 9.2 0.0039 17.7 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 ABA79706.1 - 2.6e-07 30.7 15.9 3.9e-06 26.9 15.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 ABA79706.1 - 6.9e-07 30.0 9.2 0.001 19.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA79706.1 - 8.4e-06 26.1 11.6 1.8e-05 25.1 11.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA79706.1 - 4.3e-05 23.7 18.8 0.011 16.2 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 ABA79706.1 - 0.00022 21.9 20.9 0.029 15.3 9.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 ABA79706.1 - 0.00026 21.5 11.4 0.048 14.2 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 ABA79706.1 - 0.0081 16.9 16.7 0.13 13.1 6.1 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 ABA79706.1 - 2.5 8.3 15.6 3.9 7.7 4.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF269 PF03270.13 ABA79707.1 - 2.8e-47 159.8 0.0 3.2e-47 159.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF269 Nitro_FeMo-Co PF02579.17 ABA79708.1 - 3.6e-18 65.7 0.0 4.4e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Oxidored_nitro PF00148.19 ABA79709.1 - 1.4e-109 366.4 1.0 1.6e-109 366.3 1.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase PRA-PH PF01503.17 ABA79709.1 - 0.019 15.4 0.0 0.059 13.8 0.0 1.8 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase DHO_dh PF01180.21 ABA79709.1 - 0.15 11.2 0.0 0.22 10.7 0.0 1.1 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Oxidored_nitro PF00148.19 ABA79710.1 - 1.6e-103 346.6 0.1 1.8e-103 346.4 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 ABA79711.1 - 2.7e-114 382.0 0.0 3.2e-114 381.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF3364 PF11844.8 ABA79711.1 - 5.7e-26 90.5 3.2 1.1e-25 89.6 3.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3364) Oxidored_nitro PF00148.19 ABA79712.1 - 3.2e-109 365.3 0.0 3.8e-109 365.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Apolipoprotein PF01442.18 ABA79712.1 - 0.17 11.8 0.2 3.3 7.5 0.0 2.2 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Fer4_NifH PF00142.18 ABA79713.1 - 2.5e-138 460.0 2.2 2.8e-138 459.8 2.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 ABA79713.1 - 2.5e-10 40.6 0.2 7.4e-09 35.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 ABA79713.1 - 3.5e-09 36.8 0.0 6.6e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 ABA79713.1 - 8.4e-08 31.8 0.0 3.1e-07 29.9 0.1 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 ABA79713.1 - 3.1e-06 26.8 0.3 0.00046 19.7 0.1 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MeaB PF03308.16 ABA79713.1 - 0.002 17.2 0.1 0.0044 16.1 0.0 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 ABA79713.1 - 0.0052 16.1 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.6 ABA79713.1 - 0.027 14.2 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CBP_BcsQ PF06564.12 ABA79713.1 - 0.028 13.9 0.8 5.1 6.5 0.1 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 ABA79713.1 - 0.12 12.0 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.7 ABA79713.1 - 0.13 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain CLP1_P PF16575.5 ABA79713.1 - 0.15 11.8 0.1 0.52 10.1 0.0 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DNA_ligase_A_N PF04675.14 ABA79713.1 - 0.16 12.3 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA ligase N terminus SIR2_2 PF13289.6 ABA79714.1 - 1.2e-19 70.9 0.0 1.6e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 SIR2-like domain NifT PF06988.11 ABA79715.1 - 5.4e-26 90.2 0.1 6e-26 90.0 0.1 1.0 1 0 0 1 1 1 1 NifT/FixU protein NifZ PF04319.13 ABA79716.1 - 3.5e-27 94.0 0.3 4.2e-27 93.7 0.3 1.1 1 0 0 1 1 1 1 NifZ domain LRV_FeS PF05484.11 ABA79717.1 - 2.3e-22 78.7 0.5 3.8e-22 78.0 0.5 1.4 1 0 0 1 1 1 1 LRV protein FeS4 cluster LRV PF01816.17 ABA79717.1 - 1.8e-17 62.4 78.6 0.002 18.4 2.4 7.9 8 0 0 8 8 8 7 Leucine rich repeat variant HEAT PF02985.22 ABA79717.1 - 2.7e-11 42.7 18.1 0.72 10.3 0.1 8.3 8 0 0 8 8 8 4 HEAT repeat HEAT_2 PF13646.6 ABA79717.1 - 2.6e-07 31.0 26.5 0.008 16.6 5.4 6.6 1 1 2 3 3 3 3 HEAT repeats Cnd1 PF12717.7 ABA79717.1 - 0.0023 18.0 1.4 4 7.4 0.0 3.9 4 1 0 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.7 ABA79717.1 - 1.5 9.2 15.4 59 4.1 0.1 6.0 6 0 0 6 6 6 0 HEAT repeat associated with sister chromatid cohesion Radical_SAM PF04055.21 ABA79718.1 - 8e-23 81.6 0.0 1.9e-22 80.4 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Nitro_FeMo-Co PF02579.17 ABA79718.1 - 6.6e-22 77.7 0.0 1.7e-21 76.3 0.0 1.8 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Sigma54_activat PF00158.26 ABA79719.1 - 4.3e-71 238.0 0.3 8e-71 237.2 0.3 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 ABA79719.1 - 7.2e-24 84.5 0.0 2.5e-23 82.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA79719.1 - 1.6e-12 47.0 2.6 4.3e-12 45.6 2.6 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 ABA79719.1 - 2e-08 34.3 0.1 4.3e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 ABA79719.1 - 9.9e-06 25.1 0.3 9.8e-05 21.8 0.3 2.2 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 ABA79719.1 - 0.00015 21.9 0.0 0.00027 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA PF00004.29 ABA79719.1 - 0.00025 21.5 0.0 0.00046 20.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA79719.1 - 0.0043 17.5 2.0 0.039 14.3 0.1 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 ABA79719.1 - 0.027 14.2 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 ABA79719.1 - 0.039 13.5 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_28 PF13518.6 ABA79719.1 - 0.17 12.0 2.4 1.3 9.2 0.5 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain Rhodanese PF00581.20 ABA79720.1 - 5.5e-13 49.4 0.0 7.3e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain Trm5_N PF18093.1 ABA79720.1 - 0.091 12.7 0.2 0.15 12.0 0.2 1.3 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain SPOR PF05036.13 ABA79721.2 - 1.6e-10 41.2 0.6 2.9e-09 37.2 0.0 2.5 3 0 0 3 3 3 1 Sporulation related domain SymE_toxin PF08845.10 ABA79721.2 - 0.018 15.1 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system Peptidase_S11 PF00768.20 ABA79722.2 - 3.1e-54 184.0 0.0 4.6e-54 183.4 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase PBP5_C PF07943.13 ABA79722.2 - 1.2e-13 51.1 0.0 1.9e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase2 PF13354.6 ABA79722.2 - 2.4e-08 33.9 0.0 3.6e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 ABA79722.2 - 2.9e-05 23.0 0.2 0.001 17.9 0.0 2.1 2 0 0 2 2 2 2 D-Ala-D-Ala carboxypeptidase 3 (S13) family Thymidylate_kin PF02223.17 ABA79723.1 - 3.5e-44 150.7 0.0 3.9e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 ABA79723.1 - 0.0012 19.1 0.2 0.0026 18.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain Helicase_RecD PF05127.14 ABA79723.1 - 0.028 14.3 0.1 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 Helicase AAA_33 PF13671.6 ABA79723.1 - 0.044 13.9 0.1 0.27 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA79723.1 - 0.053 14.1 0.0 0.16 12.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 ABA79723.1 - 0.079 11.9 0.2 0.15 11.0 0.2 1.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 ABA79723.1 - 0.19 12.1 3.2 2 8.8 3.2 2.1 1 1 0 1 1 1 0 AAA ATPase domain Multi_Drug_Res PF00893.19 ABA79725.1 - 1.2e-28 99.6 7.7 1.5e-28 99.3 7.7 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 ABA79725.1 - 5.1e-07 29.9 13.6 6.6e-07 29.6 13.6 1.1 1 0 0 1 1 1 1 EamA-like transporter family DUF1084 PF06454.11 ABA79725.1 - 0.0055 16.1 1.5 0.0069 15.8 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1084) UPF0060 PF02694.15 ABA79725.1 - 0.22 11.8 9.4 0.29 11.4 9.4 1.3 1 1 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family RuvB_N PF05496.12 ABA79726.1 - 6.5e-78 260.0 0.0 9.4e-78 259.4 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 ABA79726.1 - 2.6e-27 94.4 0.7 4.3e-27 93.7 0.7 1.4 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 ABA79726.1 - 9.8e-26 89.4 0.0 2.6e-25 88.1 0.0 1.7 1 1 1 2 2 2 1 RuvB C-terminal winged helix domain AAA PF00004.29 ABA79726.1 - 4.7e-17 62.7 0.0 8.8e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA79726.1 - 7.3e-07 29.3 0.2 0.0002 21.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 ABA79726.1 - 1.7e-05 24.2 0.1 0.00012 21.5 0.0 1.9 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 ABA79726.1 - 2.9e-05 24.5 0.6 0.00073 20.0 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 ABA79726.1 - 0.00017 21.8 0.2 0.068 13.4 0.0 2.4 1 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 ABA79726.1 - 0.00036 20.0 0.2 0.056 12.8 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 ABA79726.1 - 0.00078 19.6 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 ABA79726.1 - 0.0026 17.5 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 ABA79726.1 - 0.0047 16.8 0.0 0.042 13.7 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 ABA79726.1 - 0.0053 16.8 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 ABA79726.1 - 0.0087 16.0 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 ABA79726.1 - 0.044 14.2 0.0 0.069 13.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 ABA79726.1 - 0.063 13.3 0.0 0.17 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 ABA79726.1 - 0.073 13.1 0.0 9.2 6.2 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NACHT PF05729.12 ABA79726.1 - 0.074 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 ABA79726.1 - 0.11 13.1 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 ABA79726.1 - 0.12 11.6 0.0 0.37 9.9 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.6 ABA79726.1 - 0.16 12.4 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA79726.1 - 0.19 11.3 0.6 0.54 9.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 ABA79726.1 - 0.21 11.5 0.1 1.5 8.7 0.0 2.0 2 0 0 2 2 2 0 NTPase CKS PF01111.19 ABA79726.1 - 0.22 11.8 0.0 0.46 10.8 0.0 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase regulatory subunit ABC_tran PF00005.27 ABA79726.1 - 0.22 12.0 0.0 0.4 11.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Bac_DnaA PF00308.18 ABA79726.1 - 0.23 11.3 0.0 1.1 9.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_11 PF13086.6 ABA79726.1 - 0.27 11.0 0.0 0.39 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Peptidase_M48 PF01435.18 ABA79727.1 - 5.4e-38 130.7 0.1 5.4e-38 130.7 0.1 1.4 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 ABA79727.1 - 0.0056 15.9 0.0 0.0096 15.1 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 RuvA_N PF01330.21 ABA79728.1 - 2e-17 63.1 0.2 8.9e-17 60.9 0.1 1.9 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 ABA79728.1 - 1.4e-13 51.0 4.0 1.4e-13 51.0 4.0 1.7 2 0 0 2 2 2 1 RuvA, C-terminal domain HHH_5 PF14520.6 ABA79728.1 - 6.5e-12 45.9 3.7 6e-11 42.8 1.1 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain Transposase_20 PF02371.16 ABA79728.1 - 0.0056 17.0 1.6 12 6.3 0.3 3.6 3 0 0 3 3 3 2 Transposase IS116/IS110/IS902 family HHH_8 PF14716.6 ABA79728.1 - 0.061 13.7 1.5 2.6 8.5 0.1 3.3 4 0 0 4 4 4 0 Helix-hairpin-helix domain HHH PF00633.23 ABA79728.1 - 0.11 12.4 8.4 0.12 12.3 0.1 3.8 4 0 0 4 4 4 0 Helix-hairpin-helix motif RuvC PF02075.17 ABA79729.1 - 2.9e-41 140.8 0.2 3.3e-41 140.6 0.2 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DUF1127 PF06568.11 ABA79730.1 - 2e-15 56.2 1.7 2e-15 56.2 1.7 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1127) PrmA PF06325.13 ABA79731.1 - 1.1e-55 189.2 0.0 1.3e-55 188.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 ABA79731.1 - 1.9e-10 40.7 0.0 2.9e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA79731.1 - 8.5e-10 38.4 0.1 1.4e-09 37.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 ABA79731.1 - 1.3e-09 38.7 0.2 2.4e-09 37.7 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 ABA79731.1 - 4.5e-06 26.7 0.0 6.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79731.1 - 4.8e-05 23.9 0.1 8.8e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.11 ABA79731.1 - 5e-05 23.0 0.3 7.2e-05 22.5 0.3 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_16 PF10294.9 ABA79731.1 - 8e-05 22.4 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_12 PF08242.12 ABA79731.1 - 9.5e-05 23.1 0.0 0.00016 22.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79731.1 - 0.00021 21.2 0.0 0.00066 19.6 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain AviRa PF11599.8 ABA79731.1 - 0.0027 17.2 0.0 0.0041 16.6 0.0 1.2 1 0 0 1 1 1 1 RRNA methyltransferase AviRa Methyltransf_2 PF00891.18 ABA79731.1 - 0.0059 15.9 0.3 0.011 15.0 0.2 1.7 2 0 0 2 2 2 1 O-methyltransferase domain TrmK PF04816.12 ABA79731.1 - 0.0075 15.8 0.2 0.011 15.2 0.2 1.2 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase PCMT PF01135.19 ABA79731.1 - 0.072 12.8 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 ABA79731.1 - 0.1 11.6 0.1 0.14 11.1 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.18 ABA79731.1 - 0.12 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 ABA79731.1 - 0.19 11.5 0.1 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 Met-10+ like-protein PMSR PF01625.21 ABA79732.1 - 1.1e-65 220.5 0.1 1.2e-65 220.3 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PriA_C PF18074.1 ABA79733.1 - 3e-18 66.4 0.0 9.1e-18 64.9 0.0 1.9 1 0 0 1 1 1 1 Primosomal protein N C-terminal domain PriA_3primeBD PF17764.1 ABA79733.1 - 1.5e-12 47.2 0.0 3.8e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 3′ DNA-binding domain (3′BD) DEAD PF00270.29 ABA79733.1 - 3e-11 43.4 0.0 2.7e-10 40.3 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase PriA_CRR PF18319.1 ABA79733.1 - 2e-10 40.4 5.6 2e-10 40.4 5.6 2.6 3 0 0 3 3 3 1 PriA DNA helicase Cys-rich region (CRR) domain ResIII PF04851.15 ABA79733.1 - 2.2e-06 27.8 0.0 8.8e-06 25.8 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 ABA79733.1 - 3.9e-06 27.2 0.0 0.00041 20.7 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_30 PF13604.6 ABA79733.1 - 0.0045 16.7 0.2 0.0088 15.8 0.2 1.5 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 ABA79733.1 - 0.0067 16.2 0.5 0.059 13.2 0.0 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrwB_AAD_bind PF10412.9 ABA79733.1 - 0.0068 15.4 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain MarR_2 PF12802.7 ABA79733.1 - 0.0081 16.0 0.3 0.045 13.6 0.3 2.4 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 ABA79733.1 - 0.015 15.4 0.1 0.051 13.7 0.1 1.9 1 0 0 1 1 1 0 DprA winged helix domain zf-CHY PF05495.12 ABA79733.1 - 0.04 14.4 4.2 0.075 13.5 4.2 1.3 1 0 0 1 1 1 0 CHY zinc finger AAA_22 PF13401.6 ABA79733.1 - 0.041 14.2 0.0 0.077 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain zf-RRN7 PF11781.8 ABA79733.1 - 2.4 7.9 9.3 4.3 7.1 1.1 3.2 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc-ribbons_6 PF07191.12 ABA79733.1 - 2.5 8.1 9.9 8 6.5 10.0 1.7 1 1 0 1 1 1 0 zinc-ribbons TAL_FSA PF00923.19 ABA79734.1 - 1.3e-59 202.0 0.2 1.6e-58 198.4 0.2 2.1 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase TGT PF01702.18 ABA79734.1 - 0.012 14.8 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase DUF484 PF04340.12 ABA79735.1 - 4e-21 75.8 0.0 5e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF484 Phage_integrase PF00589.22 ABA79736.1 - 3.8e-31 108.2 0.0 1e-30 106.8 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 ABA79736.1 - 1.1e-13 51.2 0.3 5.1e-13 49.1 0.2 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 ABA79736.1 - 0.0026 18.2 0.0 0.0055 17.2 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain EF-hand_5 PF13202.6 ABA79737.1 - 2.8e-12 45.6 1.4 0.0096 15.4 0.1 3.3 3 0 0 3 3 3 3 EF hand EF-hand_1 PF00036.32 ABA79737.1 - 7.6e-12 43.9 0.0 0.0041 16.6 0.0 3.3 3 0 0 3 3 3 3 EF hand EF-hand_6 PF13405.6 ABA79737.1 - 1.1e-10 40.6 0.1 0.019 14.9 0.0 3.4 3 0 0 3 3 3 3 EF-hand domain EF-hand_7 PF13499.6 ABA79737.1 - 4.8e-09 36.6 0.0 2.5e-06 27.9 0.0 2.3 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_8 PF13833.6 ABA79737.1 - 1.9e-06 27.6 0.0 0.86 9.5 0.0 3.2 3 0 0 3 3 3 3 EF-hand domain pair VCBS PF13517.6 ABA79737.1 - 0.18 12.4 0.8 38 5.0 0.1 3.0 3 0 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Dockerin_1 PF00404.18 ABA79737.1 - 1.1 9.5 3.1 4 7.7 1.3 2.5 2 1 0 2 2 2 0 Dockerin type I domain CDP-OH_P_transf PF01066.21 ABA79738.1 - 3.6e-07 30.9 0.5 3.6e-07 30.9 0.5 2.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase EamA PF00892.20 ABA79739.1 - 5.7e-11 42.7 28.6 5.9e-08 33.0 11.3 2.4 2 1 0 2 2 2 2 EamA-like transporter family Multi_Drug_Res PF00893.19 ABA79739.1 - 9.9 6.9 20.6 6.9 7.4 4.3 3.7 2 2 1 3 3 3 0 Small Multidrug Resistance protein DNA_binding_1 PF01035.20 ABA79740.1 - 3.5e-22 78.3 0.0 6.5e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.15 ABA79740.1 - 0.079 13.8 0.2 0.52 11.2 0.2 2.0 1 1 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DUF3253 PF11625.8 ABA79741.1 - 5.3e-25 87.5 1.3 5.8e-25 87.3 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3253) Herpes_UL51 PF04540.13 ABA79741.1 - 0.034 13.9 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL51 protein tRNA-synt_1 PF00133.22 ABA79742.1 - 8.4e-171 569.2 0.0 1e-170 569.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 ABA79742.1 - 2.2e-23 82.9 0.0 3.9e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 ABA79742.1 - 2.6e-18 66.0 0.0 2.7e-10 39.6 0.0 3.2 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 ABA79742.1 - 6.5e-07 29.0 0.0 0.00053 19.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 ABA79742.1 - 1.3e-05 24.3 0.0 0.00075 18.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-FPG_IleRS PF06827.14 ABA79742.1 - 0.00078 19.2 3.4 0.0016 18.3 3.4 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS tRNA-synt_1_2 PF13603.6 ABA79742.1 - 0.032 13.7 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 DUF697 PF05128.12 ABA79743.1 - 3.7e-47 160.1 0.2 7.9e-47 159.0 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF697) DUF2975 PF11188.8 ABA79743.1 - 0.05 13.5 0.2 0.05 13.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF463 PF04317.12 ABA79744.1 - 1.7e-164 548.0 0.0 2e-164 547.8 0.0 1.0 1 0 0 1 1 1 1 YcjX-like family, DUF463 PseudoU_synth_1 PF01416.20 ABA79745.1 - 3.8e-37 127.1 0.0 2.6e-29 101.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase RNase_T PF00929.24 ABA79746.1 - 1.8e-36 126.2 0.0 3.4e-36 125.3 0.0 1.5 1 0 0 1 1 1 1 Exonuclease DNA_pol_A_exo1 PF01612.20 ABA79746.1 - 5.4e-05 23.0 0.1 0.00091 19.0 0.0 2.5 1 1 1 2 2 2 1 3'-5' exonuclease PAS PF00989.25 ABA79746.1 - 0.052 13.6 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 PAS fold PAS_4 PF08448.10 ABA79746.1 - 0.13 12.5 3.5 0.17 12.2 0.0 3.0 4 0 0 4 4 4 0 PAS fold MadM PF03818.13 ABA79746.1 - 2.4 8.1 7.6 3.1 7.7 0.1 2.8 3 0 0 3 3 3 0 Malonate/sodium symporter MadM subunit Response_reg PF00072.24 ABA79747.1 - 4.8e-25 87.9 0.0 5.4e-25 87.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CopD PF05425.13 ABA79748.1 - 0.14 12.6 3.6 2.3 8.6 0.0 2.3 1 1 1 2 2 2 0 Copper resistance protein D DUF294 PF03445.13 ABA79749.1 - 2.6e-48 163.4 0.0 5.8e-48 162.2 0.0 1.6 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 ABA79749.1 - 1e-42 145.3 0.0 2.3e-42 144.2 0.0 1.5 1 0 0 1 1 1 1 Putative nucleotidyltransferase substrate binding domain CBS PF00571.28 ABA79749.1 - 7.4e-24 84.0 0.9 3.8e-12 46.4 0.2 3.1 3 0 0 3 3 3 2 CBS domain cNMP_binding PF00027.29 ABA79749.1 - 5.5e-18 64.8 0.1 2.9e-17 62.5 0.0 2.2 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain Cofac_haem_bdg PF04187.13 ABA79749.1 - 0.098 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN SSF PF00474.17 ABA79750.1 - 2.9e-45 154.9 40.4 1.1e-29 103.6 25.6 2.4 2 1 0 2 2 2 2 Sodium:solute symporter family DUF2818 PF10993.8 ABA79750.1 - 0.0065 17.0 0.3 0.032 14.8 0.3 2.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2818) DUF4212 PF13937.6 ABA79751.2 - 2.1e-34 117.7 2.7 2.3e-34 117.6 2.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) LapA_dom PF06305.11 ABA79751.2 - 0.43 10.4 2.3 12 5.8 0.5 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain ADK PF00406.22 ABA79752.2 - 7.2e-51 172.3 0.0 8.4e-51 172.0 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 ABA79752.2 - 1.9e-22 80.1 0.0 2.9e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 ABA79752.2 - 2.1e-10 40.4 1.2 3.7e-10 39.6 1.2 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 ABA79752.2 - 6e-06 26.8 0.0 9.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA79752.2 - 2.2e-05 24.7 0.0 3.3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF1451 PF07295.11 ABA79752.2 - 0.00037 20.5 2.5 0.0006 19.9 2.3 1.4 1 1 0 1 1 1 1 Zinc-ribbon containing domain Hydin_ADK PF17213.3 ABA79752.2 - 0.00066 20.0 0.2 0.98 9.7 0.1 2.2 1 1 1 2 2 2 2 Hydin Adenylate kinase-like domain Cytidylate_kin PF02224.18 ABA79752.2 - 0.0041 16.9 0.0 0.0061 16.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase Zeta_toxin PF06414.12 ABA79752.2 - 0.014 14.7 0.1 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin HypA PF01155.19 ABA79752.2 - 0.026 14.5 0.1 0.043 13.8 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ephrin_rec_like PF07699.13 ABA79752.2 - 0.052 13.3 1.2 0.11 12.3 1.2 1.4 1 0 0 1 1 1 0 Putative ephrin-receptor like AAA_22 PF13401.6 ABA79752.2 - 0.16 12.3 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.10 ABA79752.2 - 0.8 9.9 2.8 1.7 8.8 2.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain AMP-binding PF00501.28 ABA79753.1 - 6.9e-95 318.1 0.0 8.3e-95 317.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA79753.1 - 7.1e-25 87.8 0.1 1.8e-24 86.5 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 ABA79753.1 - 9.2e-23 79.9 1.0 3.7e-22 78.0 0.9 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus VbhA PF18495.1 ABA79753.1 - 0.05 13.5 0.0 3.4 7.6 0.0 2.6 2 0 0 2 2 2 0 Antitoxin VbhA Sulfate_transp PF00916.20 ABA79754.1 - 5.7e-76 255.7 22.9 6.9e-76 255.5 22.9 1.1 1 0 0 1 1 1 1 Sulfate permease family STAS PF01740.21 ABA79754.1 - 5.8e-08 32.4 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 STAS domain Putative_PNPOx PF01243.20 ABA79755.1 - 6.3e-05 23.1 0.0 0.00045 20.3 0.0 1.9 1 1 1 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.6 ABA79755.1 - 0.0014 18.6 0.0 0.0031 17.5 0.0 1.5 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Peptidase_S13 PF02113.15 ABA79756.1 - 4.6e-57 193.7 0.1 6.4e-57 193.2 0.1 1.1 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Peptidase_S11 PF00768.20 ABA79756.1 - 0.00017 21.1 0.2 0.0032 16.9 0.0 2.1 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 ABA79756.1 - 0.00084 19.0 0.1 0.011 15.4 0.1 2.3 2 0 0 2 2 2 1 Beta-lactamase enzyme family Transpeptidase PF00905.22 ABA79756.1 - 0.023 13.9 0.1 6.6 5.8 0.0 2.3 2 0 0 2 2 2 0 Penicillin binding protein transpeptidase domain DUF1214 PF06742.11 ABA79756.1 - 0.032 14.7 0.0 0.068 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1214) DRAT PF07357.11 ABA79756.1 - 0.21 10.7 0.1 0.37 10.0 0.1 1.2 1 0 0 1 1 1 0 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) TerB PF05099.13 ABA79757.1 - 1e-06 28.8 1.9 1.4e-06 28.3 1.9 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TerB ENT PF03735.14 ABA79757.1 - 0.071 13.2 0.1 0.17 12.0 0.0 1.7 2 0 0 2 2 2 0 ENT domain tRNA-synt_1f PF01921.18 ABA79758.1 - 1.1e-132 442.4 0.0 1.2e-132 442.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 ABA79758.1 - 0.00057 18.7 0.0 0.00098 18.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1b PF00579.25 ABA79758.1 - 0.00075 18.9 0.0 0.0056 16.0 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) tRNA-synt_1c PF00749.21 ABA79758.1 - 0.015 14.2 0.0 0.031 13.2 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1 PF00133.22 ABA79758.1 - 0.036 12.3 0.0 0.048 11.9 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 ABA79758.1 - 0.049 13.0 0.0 0.12 11.7 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain OsmC PF02566.19 ABA79759.1 - 3.7e-21 75.5 0.2 4.6e-21 75.2 0.2 1.1 1 0 0 1 1 1 1 OsmC-like protein CTP_transf_like PF01467.26 ABA79760.1 - 1.1e-21 77.5 0.0 1.4e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like ABC_tran PF00005.27 ABA79761.1 - 5.6e-53 179.1 0.0 5.6e-25 88.5 0.0 2.9 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 ABA79761.1 - 4.5e-17 62.8 7.5 1.2e-05 25.2 0.0 4.5 4 1 1 5 5 5 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_Xtn PF12848.7 ABA79761.1 - 2.1e-13 50.1 7.5 3.6e-12 46.2 4.9 2.7 3 0 0 3 3 2 1 ABC transporter AAA_23 PF13476.6 ABA79761.1 - 4.9e-07 30.5 6.5 0.002 18.7 0.1 3.1 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.19 ABA79761.1 - 1.1e-06 28.2 5.8 0.55 9.6 0.1 4.3 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 ABA79761.1 - 1.1e-06 28.7 0.0 0.024 14.7 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_18 PF13238.6 ABA79761.1 - 2.7e-06 27.9 0.1 0.027 15.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_29 PF13555.6 ABA79761.1 - 3.6e-06 26.6 0.6 0.016 14.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 ABA79761.1 - 8.9e-06 26.0 0.0 0.0073 16.6 0.0 3.1 3 1 0 3 3 2 1 AAA domain RsgA_GTPase PF03193.16 ABA79761.1 - 3.2e-05 23.9 0.3 0.025 14.5 0.0 2.5 2 1 0 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 ABA79761.1 - 0.00025 21.2 0.0 0.11 12.5 0.0 2.6 2 0 0 2 2 2 1 Dynamin family AAA_15 PF13175.6 ABA79761.1 - 0.00033 20.5 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain MeaB PF03308.16 ABA79761.1 - 0.00034 19.7 0.4 0.28 10.1 0.0 2.4 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 ABA79761.1 - 0.00034 20.8 1.3 0.43 10.7 0.1 3.0 3 1 0 3 3 3 2 AAA domain AAA_28 PF13521.6 ABA79761.1 - 0.0005 20.3 0.2 5.5 7.2 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.6 ABA79761.1 - 0.0039 17.0 0.2 2.9 7.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain cobW PF02492.19 ABA79761.1 - 0.004 16.8 0.1 2.3 7.8 0.0 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 ABA79761.1 - 0.0049 17.1 0.3 5.4 7.2 0.0 3.5 3 0 0 3 3 3 1 Ras of Complex, Roc, domain of DAPkinase AAA_13 PF13166.6 ABA79761.1 - 0.0073 15.0 0.5 4.3 5.9 0.0 3.3 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.6 ABA79761.1 - 0.008 16.6 6.9 0.34 11.3 0.1 3.5 2 2 0 3 3 3 1 AAA ATPase domain SbcCD_C PF13558.6 ABA79761.1 - 0.017 15.4 2.0 6.5 7.1 0.1 4.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 ABA79761.1 - 0.017 14.7 3.9 1 8.9 0.0 2.6 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.22 ABA79761.1 - 0.039 13.2 1.4 2.8 7.1 0.0 2.6 2 1 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 ABA79761.1 - 0.045 13.8 0.0 7.3 6.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain FeoB_N PF02421.18 ABA79761.1 - 0.045 13.3 0.1 2.4 7.7 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_17 PF13207.6 ABA79761.1 - 0.098 13.1 0.0 35 4.8 0.0 3.0 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 ABA79761.1 - 0.1 11.4 0.1 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ATP_bind_1 PF03029.17 ABA79761.1 - 0.12 12.1 0.1 13 5.5 0.0 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 ABA79761.1 - 0.15 11.6 0.5 8.5 5.9 0.1 2.9 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 ABA79761.1 - 0.17 11.6 4.8 5.8 6.6 0.4 3.0 2 2 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA79761.1 - 0.36 10.7 2.2 17 5.3 0.2 2.5 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 ABA79761.1 - 6.7 5.9 6.0 15 4.8 0.1 2.9 3 0 0 3 3 3 0 Zeta toxin DUF2892 PF11127.8 ABA79763.1 - 4.9e-14 52.1 4.2 5.4e-14 52.0 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3309 PF11752.8 ABA79764.1 - 5.4e-24 84.0 16.5 5.8e-24 83.9 16.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3309) SPT_ssu-like PF11779.8 ABA79764.1 - 3.7 7.3 7.0 7.5 6.3 1.6 2.1 2 0 0 2 2 2 0 Small subunit of serine palmitoyltransferase-like PDGLE PF13190.6 ABA79764.1 - 7.1 6.6 5.8 15 5.5 5.8 1.7 1 1 0 1 1 1 0 PDGLE domain CSD PF00313.22 ABA79766.1 - 1.6e-25 88.7 0.1 1.7e-25 88.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA79766.1 - 0.0001 21.9 0.1 0.00011 21.8 0.1 1.4 1 1 0 1 1 1 1 Ribonuclease B OB domain Abhydrolase_3 PF07859.13 ABA79767.2 - 4.5e-51 173.7 1.0 5.8e-51 173.4 1.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA79767.2 - 3.8e-06 26.3 1.8 0.00069 19.0 2.6 2.7 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Sulfatase PF00884.23 ABA79768.1 - 8.5e-49 166.6 0.0 1.1e-48 166.2 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Choline_sulf_C PF12411.8 ABA79768.1 - 1.7e-22 79.0 1.4 4.2e-22 77.7 1.1 1.9 2 0 0 2 2 2 1 Choline sulfatase enzyme C terminal Phosphodiest PF01663.22 ABA79768.1 - 7.1e-09 35.7 0.2 2.2e-07 30.8 0.2 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 ABA79768.1 - 8.9e-05 22.7 0.0 0.00024 21.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) Sulfatase_C PF14707.6 ABA79768.1 - 0.0038 18.0 0.1 0.022 15.5 0.0 2.1 1 1 1 2 2 2 1 C-terminal region of aryl-sulfatase DUF4994 PF16385.5 ABA79768.1 - 0.032 14.1 0.1 2 8.4 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function Lipocalin_2 PF08212.12 ABA79769.1 - 4.9e-31 107.6 0.0 5.8e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Lipocalin-like domain Lipocalin PF00061.23 ABA79769.1 - 6.4e-09 36.2 0.0 8.4e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Lipocalin / cytosolic fatty-acid binding protein family Peptidase_M3 PF01432.20 ABA79770.1 - 1.4e-112 377.3 0.0 1.8e-112 377.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M3 DUF2934 PF11154.8 ABA79770.1 - 8 6.2 11.6 0.76 9.5 2.8 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) ThiF PF00899.21 ABA79771.2 - 1e-62 211.7 0.0 1.3e-62 211.3 0.0 1.1 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 ABA79771.2 - 0.0017 18.4 0.0 0.0038 17.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 ABA79771.2 - 0.022 15.0 0.1 0.06 13.6 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 ABA79771.2 - 0.053 13.1 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dUTPase PF00692.19 ABA79772.1 - 6.3e-29 100.3 0.0 8.6e-29 99.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DFP PF04127.15 ABA79773.1 - 9.9e-67 224.4 1.2 2.4e-65 219.9 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 ABA79773.1 - 1.6e-41 141.7 0.2 2.5e-41 141.1 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein YjeF_N PF03853.15 ABA79773.1 - 0.011 15.6 0.4 6 6.7 0.0 2.5 2 0 0 2 2 2 0 YjeF-related protein N-terminus TPP_enzyme_M PF00205.22 ABA79773.1 - 0.055 13.2 0.0 6.5 6.5 0.0 3.1 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain DUF111 PF01969.17 ABA79773.1 - 0.19 10.8 3.8 0.11 11.6 1.3 1.9 2 1 1 3 3 3 0 Protein of unknown function DUF111 NAD_binding_7 PF13241.6 ABA79773.1 - 0.4 11.2 0.1 0.4 11.2 0.1 2.3 4 0 0 4 4 4 0 Putative NAD(P)-binding Cofac_haem_bdg PF04187.13 ABA79774.1 - 9.1e-42 143.5 0.3 1.1e-41 143.3 0.3 1.0 1 0 0 1 1 1 1 Haem-binding uptake, Tiki superfamily, ChaN TraB PF01963.17 ABA79774.1 - 0.092 12.6 0.2 0.19 11.6 0.1 1.5 2 0 0 2 2 2 0 TraB family Sigma70_r2 PF04542.14 ABA79775.1 - 1.7e-20 72.5 0.2 5.9e-20 70.8 0.2 2.0 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 ABA79775.1 - 3.9e-13 48.7 3.2 3.9e-13 48.7 3.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 CobU PF02283.16 ABA79776.1 - 2.3e-60 203.0 0.0 2.6e-60 202.8 0.0 1.0 1 0 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_16 PF13191.6 ABA79776.1 - 0.071 13.5 0.6 0.31 11.4 0.6 2.0 1 1 0 1 1 1 0 AAA ATPase domain WW_1 PF18507.1 ABA79776.1 - 0.19 11.4 0.0 7.9 6.3 0.0 2.4 2 0 0 2 2 2 0 WW domain His_Phos_1 PF00300.22 ABA79777.1 - 1.2e-38 132.8 2.2 1.4e-38 132.5 2.2 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) CMD PF02627.20 ABA79780.1 - 2.4e-18 66.0 3.7 1.2e-17 63.7 0.1 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family Sigma70_r2 PF04542.14 ABA79781.1 - 8.3e-16 57.5 2.2 2e-15 56.3 2.2 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 ABA79781.1 - 3.1e-12 46.0 0.2 6.4e-12 45.0 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 SnoaL_2 PF12680.7 ABA79781.1 - 9.7e-06 26.2 0.0 0.0002 22.0 0.0 2.6 2 1 0 2 2 2 1 SnoaL-like domain Sigma70_r4 PF04545.16 ABA79781.1 - 0.00018 20.9 0.0 0.00035 20.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF4440 PF14534.6 ABA79781.1 - 0.017 15.5 0.0 0.036 14.5 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4440) Glyoxalase PF00903.25 ABA79783.1 - 3.2e-08 33.8 0.3 4.3e-08 33.4 0.3 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 ABA79783.1 - 0.0013 19.5 0.7 0.0021 18.9 0.7 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain adh_short PF00106.25 ABA79784.1 - 6.2e-49 166.1 4.6 7.4e-49 165.9 4.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA79784.1 - 3.8e-48 164.1 10.3 1.3e-46 159.1 10.3 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA79784.1 - 1e-10 41.8 5.0 1.5e-10 41.3 5.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA79784.1 - 1.2e-07 31.5 1.2 3.3e-07 30.0 1.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 ABA79784.1 - 0.00025 21.0 1.6 0.0027 17.6 0.3 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1491 PF07372.12 ABA79784.1 - 0.0065 16.8 0.3 0.013 15.8 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1491) GDP_Man_Dehyd PF16363.5 ABA79784.1 - 0.016 14.6 0.2 0.025 14.0 0.1 1.4 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase Sacchrp_dh_NADP PF03435.18 ABA79784.1 - 0.023 15.0 0.1 0.049 13.9 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 ABA79784.1 - 0.031 14.9 2.4 0.08 13.5 0.4 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 ABA79784.1 - 0.055 12.8 0.2 0.11 11.9 0.2 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HxlR PF01638.17 ABA79785.1 - 2.8e-25 88.0 0.0 3.5e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 ABA79785.1 - 6.4e-05 22.8 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 ABA79785.1 - 0.0015 18.6 0.2 0.0023 18.0 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 ABA79785.1 - 0.004 17.1 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 ABA79785.1 - 0.0041 17.0 0.1 0.0065 16.4 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 ABA79785.1 - 0.0057 16.6 0.0 0.0068 16.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 ABA79785.1 - 0.014 15.2 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BLACT_WH PF17778.1 ABA79785.1 - 0.021 14.8 0.1 0.05 13.6 0.1 1.6 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_34 PF13601.6 ABA79785.1 - 0.022 14.9 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 ABA79785.1 - 0.079 12.9 0.0 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 ABA79785.1 - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LysE PF01810.18 ABA79786.1 - 9e-29 100.3 9.6 1.1e-28 100.1 9.6 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 ABA79786.1 - 0.052 13.2 5.9 0.42 10.3 5.9 2.3 1 1 0 1 1 1 0 Integral membrane protein TerC family Acetyltransf_10 PF13673.7 ABA79787.1 - 4.8e-14 52.4 0.0 6.3e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA79787.1 - 3.1e-13 50.0 0.0 4.1e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 ABA79787.1 - 7.9e-11 42.2 0.0 1.2e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA79787.1 - 3.4e-06 26.9 0.0 6.6e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 ABA79787.1 - 0.0012 19.0 0.0 0.0015 18.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA79787.1 - 0.0012 18.9 0.0 0.0081 16.3 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 ABA79787.1 - 0.0015 18.6 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 ABA79787.1 - 0.02 15.5 0.0 0.03 15.0 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 ABA79787.1 - 0.036 13.8 0.0 0.08 12.6 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 ABA79787.1 - 0.079 12.4 0.0 0.29 10.6 0.0 1.7 1 1 0 1 1 1 0 Putative acetyl-transferase ADH_zinc_N_2 PF13602.6 ABA79789.1 - 6.6e-27 95.2 1.5 6.6e-27 95.2 1.5 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 ABA79789.1 - 5.5e-18 65.2 2.4 1e-17 64.3 2.4 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA79789.1 - 4.4e-10 39.4 0.2 5.3e-09 35.9 0.1 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain DUF2855 PF11017.8 ABA79789.1 - 6.9e-05 22.8 0.1 8.7e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2855) NAD_binding_10 PF13460.6 ABA79789.1 - 0.00071 19.5 3.6 0.0013 18.7 3.6 1.5 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 ABA79789.1 - 0.015 14.8 0.1 0.029 13.8 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Epimerase PF01370.21 ABA79789.1 - 0.028 13.9 0.1 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ADH_N_2 PF16884.5 ABA79789.1 - 0.033 14.1 0.1 0.089 12.7 0.0 1.7 2 1 0 2 2 2 0 N-terminal domain of oxidoreductase NAD_binding_7 PF13241.6 ABA79789.1 - 0.05 14.0 0.1 0.093 13.2 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DapB_N PF01113.20 ABA79789.1 - 0.065 13.4 0.5 0.15 12.2 0.5 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 ABA79789.1 - 0.079 12.3 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 ABA79789.1 - 0.086 13.3 0.9 0.15 12.5 0.2 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF2742 PF10888.8 ABA79789.1 - 0.1 12.8 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) HTH_18 PF12833.7 ABA79790.1 - 1e-18 67.4 2.9 1.8e-18 66.6 2.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA79790.1 - 1.1e-12 47.7 0.1 5.8e-06 26.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 ABA79790.1 - 3e-05 23.9 0.0 6.3e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 ABA79790.1 - 0.00062 19.4 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain SnoaL PF07366.12 ABA79793.1 - 1.8e-33 115.0 0.0 2e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 ABA79793.1 - 4.1e-09 37.0 0.0 4.9e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF3826 PF12875.7 ABA79793.1 - 0.02 15.1 0.0 0.025 14.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) DUF4440 PF14534.6 ABA79793.1 - 0.091 13.2 0.0 0.48 10.8 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4440) AAA_19 PF13245.6 ABA79795.1 - 3e-34 118.5 2.3 9.7e-34 116.8 0.0 3.0 4 0 0 4 4 4 1 AAA domain UvrD-helicase PF00580.21 ABA79795.1 - 2.9e-33 115.7 0.3 2.7e-17 63.3 0.0 2.3 1 1 1 2 2 2 2 UvrD/REP helicase N-terminal domain DEAD PF00270.29 ABA79795.1 - 1.2e-25 90.2 0.0 6.8e-21 74.8 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 ABA79795.1 - 9.8e-19 67.7 0.0 5e-17 62.2 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UvrD_C PF13361.6 ABA79795.1 - 4.2e-15 56.0 0.0 3.9e-10 39.6 0.0 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 ABA79795.1 - 9.6e-12 44.5 0.0 2.5e-11 43.2 0.0 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.15 ABA79795.1 - 4.9e-05 23.4 0.0 0.25 11.3 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.18 ABA79795.1 - 0.00057 19.7 0.0 0.083 12.6 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 ABA79795.1 - 0.021 14.5 0.0 8.8 5.9 0.1 3.1 4 0 0 4 4 4 0 AAA domain AAA_11 PF13086.6 ABA79795.1 - 0.13 12.0 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain YacG PF03884.14 ABA79796.1 - 8.2e-17 60.7 0.7 1.2e-16 60.2 0.7 1.3 1 0 0 1 1 1 1 DNA gyrase inhibitor YacG DUF5534 PF17686.1 ABA79796.1 - 0.071 13.4 0.0 0.082 13.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5534) DUF2116 PF09889.9 ABA79796.1 - 0.14 12.1 0.6 0.21 11.6 0.6 1.2 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2256 PF10013.9 ABA79796.1 - 0.25 11.5 3.4 2.2 8.5 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) RNase_E_G PF10150.9 ABA79797.1 - 2.2e-42 145.3 0.0 1.3e-29 103.5 0.0 2.1 1 1 1 2 2 2 2 Ribonuclease E/G family Maf PF02545.14 ABA79798.1 - 4e-50 169.9 0.0 4.5e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein eIF-1a PF01176.19 ABA79799.1 - 1.6e-25 88.6 0.0 1.8e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 ABA79799.1 - 0.0064 16.2 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 RsgA N-terminal domain CN_hydrolase PF00795.22 ABA79800.1 - 6.7e-25 87.9 0.1 8.6e-25 87.5 0.1 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Acetyltransf_9 PF13527.7 ABA79801.1 - 0.0029 17.7 0.2 0.021 14.9 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA79801.1 - 0.0039 17.4 0.0 0.0065 16.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 ABA79801.1 - 0.018 15.4 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA79801.1 - 0.11 12.4 0.1 3.6 7.6 0.0 2.8 2 2 0 2 2 2 0 Acetyltransferase (GNAT) domain SnoaL_2 PF12680.7 ABA79802.1 - 1.3e-18 67.5 1.3 1.5e-18 67.3 1.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 ABA79802.1 - 2.5e-09 37.0 0.1 2.9e-09 36.8 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 ABA79802.1 - 4.6e-05 23.8 0.1 6.2e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 ABA79802.1 - 0.00013 22.0 0.1 0.00017 21.7 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 ABA79802.1 - 0.0012 19.1 0.1 0.0019 18.5 0.1 1.5 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 ABA79802.1 - 0.022 15.3 0.0 0.028 15.0 0.0 1.3 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain DUF4829 PF16111.5 ABA79802.1 - 0.068 14.0 0.0 0.094 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) PHZA_PHZB PF03284.13 ABA79802.1 - 0.12 12.0 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Phenazine biosynthesis protein A/B LMWPc PF01451.21 ABA79803.1 - 3e-15 56.8 0.0 4.5e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase UPF0262 PF06793.12 ABA79804.1 - 1.1e-69 233.4 0.0 1.2e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0262) Histidinol_dh PF00815.20 ABA79805.1 - 1.8e-165 550.9 0.1 2.2e-165 550.6 0.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Glyoxalase_6 PF18029.1 ABA79805.1 - 5.9 7.7 6.3 4.6 8.1 0.2 2.6 2 0 0 2 2 2 0 Glyoxalase-like domain DUF2948 PF11164.8 ABA79806.1 - 6.7e-50 168.7 0.0 7.6e-50 168.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2948) EPSP_synthase PF00275.20 ABA79807.1 - 3.6e-95 319.1 0.9 4e-95 319.0 0.9 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DctM PF06808.12 ABA79808.1 - 1.5e-78 264.5 52.2 1.8e-78 264.3 52.2 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 ABA79808.1 - 0.33 10.1 63.3 0.7 9.0 31.0 2.1 1 1 1 2 2 2 0 Citrate transporter DctQ PF04290.12 ABA79809.1 - 9.8e-20 70.8 11.1 9.8e-20 70.8 11.1 1.5 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctP PF03480.13 ABA79810.1 - 7.6e-27 94.4 0.0 9.7e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 Cupin_3 PF05899.12 ABA79811.1 - 7.4e-11 41.6 0.8 1.2e-08 34.5 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF861) AraC_binding PF02311.19 ABA79811.1 - 9.5e-07 28.8 0.1 0.045 13.7 0.0 2.2 2 0 0 2 2 2 2 AraC-like ligand binding domain AraC_binding_2 PF14525.6 ABA79811.1 - 0.00055 19.7 0.5 0.0041 16.8 0.1 2.2 2 1 0 2 2 2 1 AraC-binding-like domain Cupin_2 PF07883.11 ABA79811.1 - 0.0045 16.7 0.2 0.99 9.2 0.0 2.4 2 0 0 2 2 2 2 Cupin domain DAO PF01266.24 ABA79812.1 - 1.9e-53 182.3 9.3 2.2e-53 182.1 9.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA79812.1 - 1.4e-05 25.2 0.3 4.4e-05 23.6 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 ABA79812.1 - 0.0001 21.7 0.8 0.00016 21.0 0.8 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 ABA79812.1 - 0.00016 21.0 0.1 0.00025 20.4 0.1 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 ABA79812.1 - 0.0015 17.7 5.4 0.01 14.9 5.4 2.0 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 ABA79812.1 - 0.0027 17.0 0.1 0.13 11.5 0.7 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 ABA79812.1 - 0.0028 16.9 0.1 0.0044 16.3 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA79812.1 - 0.033 13.5 0.5 0.043 13.2 0.5 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase Amino_oxidase PF01593.24 ABA79812.1 - 0.053 12.8 0.4 0.079 12.2 0.4 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase HI0933_like PF03486.14 ABA79812.1 - 0.11 11.2 0.2 0.16 10.6 0.2 1.2 1 0 0 1 1 1 0 HI0933-like protein Hydantoinase_B PF02538.14 ABA79813.1 - 3.1e-155 517.5 0.1 3.6e-155 517.3 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Troponin-I_N PF11636.8 ABA79813.1 - 1.5 8.8 4.0 4.1 7.4 4.0 1.8 1 0 0 1 1 1 0 Troponin I residues 1-32 Hydantoinase_A PF01968.18 ABA79814.1 - 2.8e-95 318.9 0.7 6e-94 314.6 0.1 2.1 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 ABA79814.1 - 2.4e-46 157.7 0.6 3.8e-43 147.3 0.0 2.5 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 ABA79814.1 - 0.00081 18.1 0.8 0.0078 14.9 0.1 2.2 2 0 0 2 2 2 1 MutL protein Cupin_2 PF07883.11 ABA79815.1 - 6.9e-18 64.1 0.1 1.4e-17 63.2 0.0 1.5 2 0 0 2 2 2 1 Cupin domain HTH_3 PF01381.22 ABA79815.1 - 1.3e-14 54.0 0.1 1.8e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 ABA79815.1 - 1.4e-12 47.7 1.0 2.4e-12 47.0 1.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 ABA79815.1 - 1.1e-09 38.2 0.0 1.8e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding_2 PF14525.6 ABA79815.1 - 9.2e-07 28.7 0.1 2.6e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 ABA79815.1 - 5.6e-06 26.3 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_26 PF13443.6 ABA79815.1 - 5.3e-05 23.6 0.0 7.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Cupin_3 PF05899.12 ABA79815.1 - 0.0066 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Asp_Arg_Hydrox PF05118.15 ABA79815.1 - 0.027 14.3 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase HTH_25 PF13413.6 ABA79815.1 - 0.038 13.9 0.1 0.12 12.3 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_35 PF13693.6 ABA79815.1 - 0.1 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding EamA PF00892.20 ABA79816.1 - 1e-28 100.2 36.2 2.6e-15 56.8 18.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family Mg_trans_NIPA PF05653.14 ABA79816.1 - 0.011 14.9 0.8 1.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium transporter NIPA TMEM234 PF10639.9 ABA79816.1 - 6.4 6.8 8.9 5.8 7.0 0.6 3.6 3 1 0 3 3 3 0 Putative transmembrane family 234 MASE1 PF05231.14 ABA79817.2 - 4e-38 131.2 35.3 5.8e-38 130.7 35.3 1.1 1 0 0 1 1 1 1 MASE1 HisKA_2 PF07568.12 ABA79817.2 - 1e-18 67.2 0.0 2.2e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 ABA79817.2 - 6.4e-08 33.1 0.0 1.6e-07 31.8 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA79817.2 - 7.9e-08 32.3 0.4 2.8e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 ABA79817.2 - 7.3e-06 26.6 2.5 1e-05 26.1 0.1 2.5 2 1 1 3 3 3 1 HWE histidine kinase SPOB_a PF14689.6 ABA79817.2 - 0.17 11.6 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 ABA79817.2 - 0.22 11.4 0.0 0.66 9.8 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BPD_transp_1 PF00528.22 ABA79818.1 - 1.5e-24 86.7 13.2 2.6e-24 86.0 13.2 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Romo1 PF10247.9 ABA79818.1 - 1.4 9.4 4.4 3.9 7.9 0.0 2.7 3 0 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 ABC_tran PF00005.27 ABA79819.1 - 7.6e-22 78.3 0.0 1.2e-21 77.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79819.1 - 3.1e-10 40.4 0.1 5.7e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79819.1 - 3.6e-06 26.6 0.0 0.0051 16.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA79819.1 - 0.00011 22.7 0.0 0.00017 22.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA79819.1 - 0.0012 18.8 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 ABA79819.1 - 0.0016 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA79819.1 - 0.0029 18.0 1.5 0.0046 17.4 1.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 ABA79819.1 - 0.014 15.6 0.2 0.11 12.7 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 ABA79819.1 - 0.025 14.3 0.3 0.048 13.4 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA79819.1 - 0.045 13.8 0.1 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA79819.1 - 0.052 13.8 0.1 0.087 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA79819.1 - 0.068 13.3 0.1 0.26 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA79819.1 - 0.088 13.4 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA79819.1 - 0.26 11.0 0.0 0.35 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain NMT1 PF09084.11 ABA79820.1 - 4.1e-71 239.4 0.0 4.8e-71 239.1 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 ABA79820.1 - 1e-06 28.5 0.0 1.6e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 ABA79820.1 - 7.8e-06 25.8 0.0 2.2e-05 24.3 0.0 1.8 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 ABA79820.1 - 0.00013 21.5 0.0 0.0004 19.9 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phos_pyr_kin PF08543.12 ABA79821.1 - 1.1e-89 300.0 0.4 1.3e-89 299.9 0.4 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 ABA79821.1 - 4.8e-05 22.8 0.8 6.5e-05 22.4 0.8 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 ABA79821.1 - 0.0012 18.3 2.2 0.12 11.8 0.2 2.3 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family TMP-TENI PF02581.17 ABA79822.1 - 3.6e-53 179.6 0.5 4.2e-53 179.4 0.5 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase HK PF02110.15 ABA79823.1 - 1.2e-75 254.1 0.6 1.3e-75 253.9 0.6 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 ABA79823.1 - 0.0091 15.5 0.3 0.012 15.2 0.3 1.2 1 0 0 1 1 1 1 Carbohydrate kinase SLT PF01464.20 ABA79824.1 - 1.9e-13 50.1 0.0 2.5e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain BetR PF08667.10 ABA79824.1 - 0.036 14.1 0.0 0.048 13.7 0.0 1.1 1 0 0 1 1 1 0 BetR domain LPAM_2 PF13627.6 ABA79824.1 - 3.8 7.5 9.6 6.5 6.7 9.6 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Inositol_P PF00459.25 ABA79825.1 - 1.3e-53 182.3 0.0 1.6e-53 182.0 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family Epimerase PF01370.21 ABA79826.1 - 2.7e-55 187.4 0.0 3.6e-55 187.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA79826.1 - 1.6e-50 172.4 0.0 4.1e-50 171.1 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 ABA79826.1 - 2.2e-17 63.0 0.0 8.8e-16 57.7 0.0 2.0 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 ABA79826.1 - 9.6e-16 57.8 0.1 1.1e-13 50.9 0.1 3.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 ABA79826.1 - 3.2e-15 56.0 0.0 4.2e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 ABA79826.1 - 3e-07 30.5 0.0 4.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 ABA79826.1 - 1.5e-06 27.9 0.0 3.4e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 ABA79826.1 - 2.8e-06 26.7 0.0 1.1e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.25 ABA79826.1 - 0.0016 17.9 0.0 0.12 11.8 0.0 2.4 3 0 0 3 3 3 1 short chain dehydrogenase KR PF08659.10 ABA79826.1 - 0.041 13.8 0.0 4.9 7.0 0.0 2.3 2 0 0 2 2 2 0 KR domain UDPG_MGDP_dh_N PF03721.14 ABA79827.1 - 8.8e-68 227.6 0.1 1.4e-67 226.9 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 ABA79827.1 - 5.2e-38 129.1 0.0 1.4e-37 127.8 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 ABA79827.1 - 2e-30 105.3 0.0 1.7e-27 95.9 0.0 2.6 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 ABA79827.1 - 6.4e-05 23.5 0.1 0.17 12.4 0.0 4.0 3 2 1 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 ABA79827.1 - 0.0011 18.9 0.4 0.0065 16.4 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 ABA79827.1 - 0.0021 18.2 0.1 0.016 15.4 0.1 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 ABA79827.1 - 0.0029 17.5 0.6 0.0084 16.0 0.5 1.8 1 1 0 1 1 1 1 NAD(P)H-binding NAD_Gly3P_dh_N PF01210.23 ABA79827.1 - 0.038 14.0 0.0 0.28 11.2 0.0 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 ABA79827.1 - 0.11 12.2 0.0 0.31 10.7 0.0 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 ABA79827.1 - 0.18 12.4 2.6 0.43 11.2 0.1 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase EamA PF00892.20 ABA79828.1 - 3e-25 89.0 37.3 1.4e-15 57.6 13.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family Mg_trans_NIPA PF05653.14 ABA79828.1 - 0.25 10.4 11.3 0.14 11.3 2.2 2.4 2 1 0 2 2 2 0 Magnesium transporter NIPA Transcrip_reg PF01709.20 ABA79829.1 - 1.7e-95 319.0 0.7 1.9e-95 318.9 0.7 1.0 1 0 0 1 1 1 1 Transcriptional regulator DUF4376 PF14301.6 ABA79829.1 - 0.0093 16.3 0.2 0.12 12.8 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4376) zf-CpG_bind_C PF12269.8 ABA79829.1 - 0.094 12.5 0.4 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain CorC_HlyC PF03471.17 ABA79829.1 - 0.14 12.2 0.4 2 8.5 0.0 2.3 2 0 0 2 2 2 0 Transporter associated domain CitMHS PF03600.16 ABA79830.2 - 1.4e-44 152.5 73.3 5.9e-36 124.2 39.6 2.2 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.21 ABA79830.2 - 2.5e-21 75.3 2.9 3.2e-10 39.7 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 ABA79830.2 - 4.8e-16 58.9 37.4 1.7e-10 40.6 15.2 3.6 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region DHquinase_II PF01220.19 ABA79830.2 - 0.031 14.0 0.0 0.094 12.4 0.0 1.8 2 0 0 2 2 2 0 Dehydroquinase class II DctM PF06808.12 ABA79830.2 - 1.8 7.3 39.5 1.8 7.3 10.9 2.6 2 1 0 2 2 2 0 Tripartite ATP-independent periplasmic transporter, DctM component YmdB PF13277.6 ABA79831.1 - 5.4e-101 337.2 0.0 6.1e-101 337.0 0.0 1.0 1 0 0 1 1 1 1 YmdB-like protein His_biosynth PF00977.21 ABA79831.1 - 0.093 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein DEAD_assoc PF08494.11 ABA79832.1 - 8.4e-41 139.9 0.0 1.4e-40 139.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 ABA79832.1 - 1.7e-19 70.3 0.0 3e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 ABA79832.1 - 1.1e-15 58.0 0.0 1.9e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 ABA79832.1 - 7.4e-06 26.1 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Metallophos PF00149.28 ABA79833.1 - 2.5e-06 28.2 0.0 2.9e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 ABA79833.1 - 0.00059 20.1 0.0 0.00082 19.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain LytTR PF04397.15 ABA79834.1 - 7.3e-08 32.5 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 LytTr DNA-binding domain THF_DHG_CYH_C PF02882.19 ABA79835.1 - 5.2e-66 220.9 2.1 8.9e-66 220.1 2.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 ABA79835.1 - 1.5e-37 128.4 0.0 2.2e-37 127.9 0.0 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CM_2 PF01817.21 ABA79836.1 - 6.4e-16 58.5 0.5 7.7e-16 58.2 0.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II FTHFS PF01268.19 ABA79837.1 - 2.2e-262 871.2 0.0 2.5e-262 871.1 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase GHMP_kinases_N PF00288.26 ABA79837.1 - 0.059 13.6 0.7 0.23 11.7 0.3 2.3 2 1 0 2 2 2 0 GHMP kinases N terminal domain ATG22 PF11700.8 ABA79838.2 - 0.0074 15.0 0.0 0.012 14.2 0.0 1.2 1 1 0 1 1 1 1 Vacuole effluxer Atg22 like DUF4719 PF15843.5 ABA79838.2 - 0.21 11.7 0.1 0.21 11.7 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4719) Peptidase_M41 PF01434.18 ABA79839.1 - 7.2e-59 198.8 1.3 1.2e-58 198.1 1.3 1.4 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 ABA79839.1 - 1e-45 155.4 0.0 2.9e-45 153.9 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) FtsH_ext PF06480.15 ABA79839.1 - 4.5e-14 52.7 2.0 1.1e-13 51.5 0.1 2.2 2 0 0 2 2 2 1 FtsH Extracellular AAA_lid_3 PF17862.1 ABA79839.1 - 4.7e-13 48.7 0.0 1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 ABA79839.1 - 1.7e-05 25.3 0.1 0.00012 22.5 0.1 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 ABA79839.1 - 3.3e-05 23.9 0.1 0.00025 21.0 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 ABA79839.1 - 5.7e-05 22.5 0.0 0.00015 21.1 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 ABA79839.1 - 0.00022 21.0 0.0 0.0015 18.3 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain SurA_N_3 PF13624.6 ABA79839.1 - 0.00093 19.0 0.2 0.071 12.9 0.1 2.6 2 0 0 2 2 2 1 SurA N-terminal domain AAA_22 PF13401.6 ABA79839.1 - 0.0016 18.7 0.1 0.081 13.2 0.1 3.1 3 1 0 4 4 4 1 AAA domain AAA_33 PF13671.6 ABA79839.1 - 0.0023 18.1 0.0 0.013 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 ABA79839.1 - 0.0066 16.2 0.0 0.022 14.5 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF3892 PF13031.6 ABA79839.1 - 0.012 16.2 0.0 0.035 14.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3892) AAA_2 PF07724.14 ABA79839.1 - 0.014 15.6 0.0 0.046 13.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 ABA79839.1 - 0.038 13.4 1.1 0.073 12.4 0.2 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 ABA79839.1 - 0.041 13.0 0.0 0.12 11.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 ABA79839.1 - 0.058 13.6 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 ABA79839.1 - 0.062 13.7 0.0 0.2 12.1 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA79839.1 - 0.084 12.9 0.0 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA79839.1 - 0.12 13.0 0.0 0.39 11.3 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA79839.1 - 0.12 11.9 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_3 PF01171.20 ABA79840.1 - 4.7e-45 153.6 0.0 6.1e-45 153.2 0.0 1.1 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 ABA79840.1 - 0.00084 18.9 0.0 0.0019 17.8 0.0 1.4 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 ABA79840.1 - 0.0012 18.6 0.0 0.0022 17.7 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 ABA79840.1 - 0.19 11.8 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 ABA79840.1 - 0.35 9.6 0.0 0.49 9.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase TPR_6 PF13174.6 ABA79841.1 - 7.3e-09 35.7 1.3 0.0039 17.7 0.0 4.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 ABA79841.1 - 3.9e-08 33.8 2.6 3.9e-08 33.8 2.6 3.9 3 1 2 5 5 5 2 Tetratricopeptide repeat DUF3138 PF11336.8 ABA79841.1 - 3.9e-05 22.5 4.6 5.9e-05 21.9 4.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3138) TPR_19 PF14559.6 ABA79841.1 - 0.00071 20.0 3.7 0.076 13.5 0.0 3.3 2 1 1 3 3 3 2 Tetratricopeptide repeat YfiO PF13525.6 ABA79841.1 - 0.0016 18.2 0.0 0.0054 16.5 0.0 1.9 2 1 0 2 2 1 1 Outer membrane lipoprotein TPR_2 PF07719.17 ABA79841.1 - 0.0017 18.3 4.0 0.036 14.2 0.2 3.7 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 ABA79841.1 - 0.003 17.5 0.5 1.4 9.1 0.0 3.6 3 1 0 3 3 3 1 Tetratricopeptide repeat T2SSM PF04612.12 ABA79841.1 - 0.009 16.1 1.9 0.017 15.2 1.9 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M TPR_14 PF13428.6 ABA79841.1 - 0.0095 16.7 1.2 0.0095 16.7 1.2 4.6 4 1 1 5 5 4 1 Tetratricopeptide repeat HBM PF16591.5 ABA79841.1 - 0.014 14.8 1.5 0.018 14.5 0.5 1.6 2 0 0 2 2 2 0 Helical bimodular sensor domain TPR_1 PF00515.28 ABA79841.1 - 0.018 14.8 0.3 0.53 10.2 0.4 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 ABA79841.1 - 0.022 15.0 0.4 0.78 10.1 0.1 3.2 4 0 0 4 4 3 0 Tetratricopeptide repeat JAKMIP_CC3 PF16034.5 ABA79841.1 - 0.022 14.7 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 JAKMIP CC3 domain DEC-1_N PF04625.13 ABA79841.1 - 0.034 13.2 6.0 0.022 13.8 3.5 1.7 1 1 0 2 2 2 0 DEC-1 protein, N-terminal region DivIC PF04977.15 ABA79841.1 - 0.041 13.6 0.4 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Septum formation initiator DNA_Packaging PF11053.8 ABA79841.1 - 0.11 12.4 0.2 0.58 10.0 0.1 2.0 1 1 1 2 2 2 0 Terminase DNA packaging enzyme Allexi_40kDa PF05549.11 ABA79841.1 - 0.13 11.7 0.0 0.19 11.2 0.0 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein Baculo_PEP_C PF04513.12 ABA79841.1 - 0.22 11.5 0.8 0.49 10.4 0.8 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran_CTD PF16326.5 ABA79841.1 - 0.33 11.2 1.9 4.4 7.6 1.9 2.5 2 1 1 3 3 3 0 ABC transporter C-terminal domain DUF4148 PF13663.6 ABA79841.1 - 0.36 11.1 5.9 1.3 9.2 5.9 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) OmpA PF00691.20 ABA79842.1 - 4e-24 84.8 0.0 5.2e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 OmpA family PD40 PF07676.12 ABA79843.1 - 7.9e-41 137.2 17.5 5e-12 45.4 0.2 6.2 6 0 0 6 6 6 5 WD40-like Beta Propeller Repeat TolB_N PF04052.13 ABA79843.1 - 2.3e-30 104.9 0.0 5.8e-30 103.6 0.0 1.7 2 0 0 2 2 2 1 TolB amino-terminal domain Pectate_lyase22 PF14583.6 ABA79843.1 - 0.00011 21.0 0.0 0.68 8.5 0.0 4.0 3 2 1 4 4 4 2 Oligogalacturonate lyase DPPIV_N PF00930.21 ABA79843.1 - 0.00021 20.2 0.0 4.3 6.0 0.0 4.0 1 1 0 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Gmad1 PF10647.9 ABA79843.1 - 0.0022 17.8 0.0 0.5 10.1 0.0 3.4 2 1 2 4 4 4 2 Lipoprotein LpqB beta-propeller domain ExbD PF02472.16 ABA79845.1 - 2.4e-27 95.7 0.1 2.7e-27 95.5 0.1 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR Caa3_CtaG PF09678.10 ABA79845.1 - 0.038 13.4 0.5 0.047 13.2 0.5 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Imm58 PF15581.6 ABA79845.1 - 0.14 12.3 0.0 0.16 12.1 0.0 1.4 1 1 0 1 1 1 0 Immunity protein 58 MotA_ExbB PF01618.16 ABA79846.1 - 6.9e-38 129.3 0.2 9.2e-38 128.9 0.2 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family 4HBT PF03061.22 ABA79847.1 - 1.8e-19 69.8 0.2 2.4e-19 69.5 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 ABA79847.1 - 5.4e-13 49.5 0.0 6.6e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 ABA79847.1 - 0.019 14.2 0.0 0.022 14.1 0.0 1.0 1 0 0 1 1 1 0 Acyl-ACP thioesterase DNA_pol3_delta2 PF13177.6 ABA79849.1 - 3.4e-31 108.2 0.0 1.2e-30 106.4 0.0 1.8 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 ABA79849.1 - 0.00024 21.6 0.0 0.001 19.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 ABA79849.1 - 0.00048 20.1 0.0 0.00086 19.3 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.6 ABA79849.1 - 0.0055 17.1 0.1 0.0055 17.1 0.1 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 ABA79849.1 - 0.0071 16.6 0.0 0.024 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 ABA79849.1 - 0.054 13.5 0.1 5.8 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TatD_DNase PF01026.21 ABA79850.1 - 5.7e-73 245.4 0.0 6.5e-73 245.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 ABA79850.1 - 0.00017 21.5 2.9 0.0024 17.7 2.7 2.3 1 1 0 1 1 1 1 Amidohydrolase Lactamase_B_2 PF12706.7 ABA79851.1 - 1.8e-31 109.3 2.3 2.1e-31 109.0 2.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 ABA79851.1 - 1.1e-07 32.0 6.3 2.7e-07 30.8 5.1 2.0 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Mem_trans PF03547.18 ABA79852.1 - 6.8e-25 87.3 19.3 1.5e-12 46.6 1.9 2.0 1 1 1 2 2 2 2 Membrane transport protein T4bSS_IcmS PF12608.8 ABA79852.1 - 0.13 12.6 0.1 0.22 11.8 0.1 1.3 1 0 0 1 1 1 0 Type IVb secretion, IcmS, effector-recruitment DUF2339 PF10101.9 ABA79853.1 - 6.3e-102 342.3 151.8 6.3e-102 342.3 151.8 2.6 2 1 0 2 2 2 1 Predicted membrane protein (DUF2339) Kdo PF06293.14 ABA79854.1 - 0.0019 17.6 0.5 0.035 13.5 0.5 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 ABA79854.1 - 0.0053 16.7 7.5 0.0076 16.2 7.5 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Porphobil_deam PF01379.20 ABA79855.2 - 4.9e-74 248.2 0.0 6e-74 248.0 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 ABA79855.2 - 1.8e-16 60.3 0.0 3.4e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain URO-D PF01208.17 ABA79856.1 - 9.4e-114 380.2 0.0 1.1e-113 379.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Coprogen_oxidas PF01218.18 ABA79858.1 - 6.2e-97 323.9 0.0 6.9e-97 323.7 0.0 1.0 1 0 0 1 1 1 1 Coproporphyrinogen III oxidase adh_short_C2 PF13561.6 ABA79860.1 - 5.8e-50 170.0 3.5 6.7e-50 169.8 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA79860.1 - 1.3e-34 119.4 0.8 1.7e-34 119.0 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA79860.1 - 2.9e-06 27.3 1.2 6.3e-06 26.2 1.0 1.7 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA79860.1 - 0.0051 16.3 0.2 0.013 15.0 0.2 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family YjeF_N PF03853.15 ABA79860.1 - 0.012 15.6 0.1 0.94 9.3 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus 3HCDH_N PF02737.18 ABA79860.1 - 0.032 14.1 2.9 1.4 8.7 0.1 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 ABA79860.1 - 0.044 13.2 0.0 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase TrkA_N PF02254.18 ABA79860.1 - 0.063 13.5 0.4 0.41 10.9 0.4 2.2 1 1 0 1 1 1 0 TrkA-N domain MTS PF05175.14 ABA79861.1 - 9.3e-45 152.2 0.0 4.6e-44 149.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 ABA79861.1 - 1.9e-09 38.1 0.0 1.8e-08 35.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79861.1 - 4.6e-08 33.6 0.0 2.1e-06 28.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA79861.1 - 1e-05 26.2 0.0 6.3e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79861.1 - 9.5e-05 22.3 0.0 0.0016 18.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79861.1 - 0.00017 21.5 0.0 0.00034 20.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MTS_N PF08468.11 ABA79861.1 - 0.0012 18.9 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain N-terminal UPF0020 PF01170.18 ABA79861.1 - 0.019 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 ABA79861.1 - 0.064 13.2 0.0 0.092 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 ABA79861.1 - 0.085 12.7 0.0 1.3 8.9 0.0 2.4 3 0 0 3 3 3 0 Hypothetical methyltransferase ClpS PF02617.17 ABA79862.2 - 1e-34 118.1 0.0 1.3e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 ATP-dependent Clp protease adaptor protein ClpS Hydrolase PF00702.26 ABA79863.1 - 8.1e-09 36.1 0.1 1.2e-08 35.6 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 ABA79863.1 - 3.6e-07 30.4 0.0 1.3e-06 28.7 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA79863.1 - 2.6e-05 24.7 0.6 3.6e-05 24.3 0.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA79863.1 - 5.4e-05 23.2 0.0 0.0002 21.3 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Acid_PPase PF12689.7 ABA79863.1 - 0.11 12.3 0.0 2 8.2 0.0 2.2 2 0 0 2 2 2 0 Acid Phosphatase Arginase PF00491.21 ABA79863.1 - 0.14 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Arginase family Peptidase_S11 PF00768.20 ABA79864.2 - 2.4e-59 200.7 1.8 4e-59 200.0 1.8 1.3 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 ABA79864.2 - 4e-13 49.4 0.1 6.5e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 ABA79864.2 - 0.0019 17.0 0.2 0.0039 16.0 0.2 1.5 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family SPOR PF05036.13 ABA79864.2 - 0.002 18.5 0.4 0.0097 16.3 0.2 2.6 2 1 1 3 3 3 2 Sporulation related domain FixS PF03597.15 ABA79865.1 - 1.3e-21 76.0 0.2 1.5e-21 75.8 0.2 1.1 1 0 0 1 1 1 1 Cytochrome oxidase maturation protein cbb3-type PEP-CTERM PF07589.11 ABA79865.1 - 0.013 15.6 0.8 0.015 15.3 0.8 1.2 1 0 0 1 1 1 0 PEP-CTERM motif E1-E2_ATPase PF00122.20 ABA79866.1 - 1.2e-44 152.0 0.2 1.2e-44 152.0 0.2 2.8 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 ABA79866.1 - 2.3e-33 116.3 2.1 5.1e-33 115.1 2.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 ABA79866.1 - 1.7e-09 38.0 0.0 4.9e-09 36.5 0.0 1.8 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.7 ABA79866.1 - 0.0034 17.8 0.9 0.0058 17.0 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 ABA79866.1 - 0.16 12.1 0.0 1 9.5 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase FixH PF05751.11 ABA79867.1 - 6e-34 117.2 0.0 6.6e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 FixH Fer4_18 PF13746.6 ABA79868.1 - 1.3e-39 134.9 8.2 3.5e-39 133.5 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain FixG_C PF11614.8 ABA79868.1 - 5e-26 91.2 0.0 7e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Fer4_5 PF12801.7 ABA79868.1 - 8e-09 35.3 2.6 8e-09 35.3 2.6 3.9 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 ABA79868.1 - 2.4e-07 31.2 7.7 7e-05 23.3 2.0 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA79868.1 - 2.9e-06 27.4 16.5 7.3e-06 26.1 2.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA79868.1 - 4.1e-06 27.3 8.8 0.0017 18.9 1.6 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA79868.1 - 5.9e-06 26.6 6.3 0.0026 18.2 1.1 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 ABA79868.1 - 0.00022 20.9 4.2 0.00022 20.9 4.2 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 ABA79868.1 - 0.00032 20.8 16.2 0.0058 16.7 12.9 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA79868.1 - 0.002 18.1 5.7 0.002 18.1 5.7 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 ABA79868.1 - 0.0028 17.8 14.3 0.36 11.0 5.1 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA79868.1 - 0.0042 17.5 3.3 0.0042 17.5 3.3 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_16 PF13484.6 ABA79868.1 - 0.0095 16.9 2.6 0.0095 16.9 2.6 2.8 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 ABA79868.1 - 0.039 14.0 3.1 0.039 14.0 3.1 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain SCP2 PF02036.17 ABA79868.1 - 0.072 13.6 0.0 4 8.0 0.0 2.3 2 0 0 2 2 2 0 SCP-2 sterol transfer family Fer4_13 PF13370.6 ABA79868.1 - 0.2 12.2 15.9 0.081 13.5 3.6 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I SpoIIM PF01944.17 ABA79868.1 - 0.5 10.4 4.1 0.093 12.8 0.5 1.6 2 0 0 2 2 1 0 Stage II sporulation protein M Fer4_3 PF12798.7 ABA79868.1 - 2.1 9.5 26.7 0.2 12.7 5.5 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain QCR10 PF09796.9 ABA79868.1 - 2.5 8.2 8.7 5.9 7.0 0.0 3.4 4 0 0 4 4 4 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) Cytochrome_CBB3 PF13442.6 ABA79869.1 - 3.6e-25 88.1 0.1 4.2e-11 43.0 0.0 2.6 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III FixP_N PF14715.6 ABA79869.1 - 8.3e-25 86.3 9.0 1.4e-24 85.5 9.0 1.4 1 0 0 1 1 1 1 N-terminal domain of cytochrome oxidase-cbb3, FixP Cytochrom_C PF00034.21 ABA79869.1 - 7.2e-20 71.9 0.0 1.6e-08 35.6 0.0 3.3 2 1 0 2 2 2 2 Cytochrome c Cytochrom_C550 PF14495.6 ABA79869.1 - 0.00031 20.5 0.3 0.37 10.5 0.0 2.6 2 1 0 2 2 2 2 Cytochrome c-550 domain Cytochrome_C7 PF14522.6 ABA79869.1 - 0.031 14.3 0.0 9.1 6.4 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DnaJ_CXXCXGXG PF00684.19 ABA79869.1 - 0.049 14.0 0.6 6.7 7.2 0.1 2.3 2 0 0 2 2 2 0 DnaJ central domain Paired_CXXCH_1 PF09699.10 ABA79869.1 - 0.1 12.4 0.4 17 5.2 0.1 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.6 ABA79869.1 - 0.1 13.1 0.1 23 5.5 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c3 DUF3365 PF11845.8 ABA79869.1 - 0.11 12.8 0.0 12 6.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3365) Haem_bd PF14376.6 ABA79869.1 - 0.17 11.8 0.0 15 5.5 0.0 2.7 3 0 0 3 3 3 0 Haem-binding domain FixQ PF05545.11 ABA79870.1 - 1.6e-21 76.0 0.4 1.9e-21 75.8 0.4 1.1 1 0 0 1 1 1 1 Cbb3-type cytochrome oxidase component FixQ DUF4381 PF14316.6 ABA79870.1 - 0.013 15.8 0.0 0.015 15.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) BatD PF13584.6 ABA79870.1 - 0.042 12.7 0.0 0.043 12.6 0.0 1.0 1 0 0 1 1 1 0 Oxygen tolerance YajC PF02699.15 ABA79870.1 - 0.06 13.2 0.0 0.076 12.9 0.0 1.1 1 0 0 1 1 1 0 Preprotein translocase subunit Lig_chan PF00060.26 ABA79870.1 - 0.069 13.0 0.0 0.073 12.9 0.0 1.1 1 0 0 1 1 1 0 Ligand-gated ion channel TMEM240 PF15207.6 ABA79870.1 - 0.12 12.1 0.5 0.13 12.0 0.5 1.1 1 0 0 1 1 1 0 TMEM240 family DUF4131 PF13567.6 ABA79870.1 - 0.16 11.6 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2615 PF11027.8 ABA79870.1 - 0.18 11.9 0.0 0.2 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) DAP10 PF07213.11 ABA79870.1 - 0.23 11.4 0.0 0.34 10.9 0.0 1.4 1 1 0 1 1 1 0 DAP10 membrane protein FixO PF02433.15 ABA79871.1 - 5.4e-97 323.5 0.0 6.2e-97 323.3 0.0 1.0 1 0 0 1 1 1 1 Cytochrome C oxidase, mono-heme subunit/FixO Cytochrom_C PF00034.21 ABA79871.1 - 9.7e-05 23.4 0.0 0.0067 17.5 0.0 2.2 2 0 0 2 2 2 1 Cytochrome c COX1 PF00115.20 ABA79872.1 - 3.8e-116 388.5 63.2 3.8e-116 388.5 63.2 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Usp PF00582.26 ABA79873.1 - 5.5e-10 39.9 14.6 6.9e-10 39.6 1.5 3.6 2 2 0 2 2 2 1 Universal stress protein family HTH_Crp_2 PF13545.6 ABA79874.1 - 1.1e-17 63.7 0.4 2.1e-17 62.8 0.4 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 ABA79874.1 - 4.9e-13 48.9 0.0 8.2e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Crp PF00325.20 ABA79874.1 - 6.2e-13 48.2 0.1 1.4e-12 47.0 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_11 PF08279.12 ABA79874.1 - 0.0004 20.3 0.4 0.0012 18.7 0.0 2.0 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 ABA79874.1 - 0.0031 17.4 0.1 0.0077 16.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 ABA79874.1 - 0.0032 17.0 0.0 0.0062 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.7 ABA79874.1 - 0.013 15.7 0.1 0.043 14.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 ABA79874.1 - 0.049 13.7 0.1 0.15 12.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 ABA79874.1 - 0.068 12.7 0.1 0.25 10.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.10 ABA79874.1 - 0.29 11.0 1.8 3 7.7 1.8 2.4 1 1 0 1 1 1 0 IclR helix-turn-helix domain Radical_SAM PF04055.21 ABA79875.1 - 3.9e-15 56.6 0.0 1.2e-14 55.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily HemN_C PF06969.16 ABA79875.1 - 0.0017 18.4 0.4 0.0053 16.8 0.4 1.9 1 0 0 1 1 1 1 HemN C-terminal domain Metallophos_2 PF12850.7 ABA79875.1 - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Glyco_trans_4_3 PF12000.8 ABA79876.1 - 1.1e-54 184.7 0.0 1.5e-54 184.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 4 group Glycos_transf_1 PF00534.20 ABA79876.1 - 4.1e-14 52.5 0.0 6.1e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA79876.1 - 2.2e-13 50.8 0.0 6.6e-13 49.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 ABA79876.1 - 1.2e-06 28.8 0.0 2.4e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA79876.1 - 0.00037 20.5 0.3 0.0023 17.9 0.3 2.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 ABA79876.1 - 0.00087 19.8 5.3 0.00087 19.8 5.3 2.7 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain ABC_tran PF00005.27 ABA79877.1 - 2.6e-57 193.2 0.0 2.8e-27 95.9 0.0 2.1 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA79877.1 - 1.5e-14 54.6 0.5 5.1e-05 23.2 0.1 3.9 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 ABA79877.1 - 1.4e-09 38.3 0.0 1.5e-05 25.4 0.0 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 ABA79877.1 - 3.1e-09 36.6 0.1 0.0019 17.6 0.0 3.3 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA79877.1 - 4.3e-06 27.2 2.9 0.015 15.7 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 ABA79877.1 - 6.8e-05 23.2 3.4 0.24 11.6 0.1 3.5 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.6 ABA79877.1 - 8.2e-05 22.3 4.0 0.12 12.2 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA79877.1 - 0.00016 21.3 0.2 0.52 9.9 0.1 3.6 4 0 0 4 4 4 1 AAA domain IstB_IS21 PF01695.17 ABA79877.1 - 0.00049 19.9 0.1 0.087 12.5 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 ABA79877.1 - 0.0025 17.7 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_7 PF12775.7 ABA79877.1 - 0.0036 16.9 0.6 0.9 9.0 0.1 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region ATP-synt_ab PF00006.25 ABA79877.1 - 0.012 15.3 0.2 4.9 6.7 0.1 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 ABA79877.1 - 0.013 15.5 0.3 7 6.6 0.0 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 ABA79877.1 - 0.014 15.5 0.0 8.9 6.5 0.0 2.7 2 1 0 2 2 2 0 AAA domain GvpD PF07088.11 ABA79877.1 - 0.015 13.9 0.2 0.12 11.0 0.0 2.1 2 0 0 2 2 2 0 GvpD gas vesicle protein AAA_24 PF13479.6 ABA79877.1 - 0.016 15.0 0.1 5.4 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA79877.1 - 0.016 14.6 1.4 1.8 7.9 0.0 2.9 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 ABA79877.1 - 0.017 14.5 1.8 1.4 8.2 0.0 2.5 3 0 0 3 3 3 0 KaiC SbcCD_C PF13558.6 ABA79877.1 - 0.056 13.7 0.8 8.8 6.6 0.0 3.3 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 ABA79877.1 - 0.059 13.1 1.2 2.2 7.9 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 ABA79877.1 - 0.067 13.5 0.1 2.4 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 ABA79877.1 - 0.084 12.1 0.4 0.97 8.6 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain NB-ARC PF00931.22 ABA79877.1 - 0.085 12.0 1.4 4.7 6.3 0.5 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF2075 PF09848.9 ABA79877.1 - 0.09 12.0 0.0 7.2 5.7 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 ABA79877.1 - 0.091 12.7 0.1 5.5 6.9 0.0 2.8 3 0 0 3 3 3 0 NTPase DEAD PF00270.29 ABA79877.1 - 0.1 12.4 1.1 66 3.2 0.3 3.3 3 1 0 3 3 3 0 DEAD/DEAH box helicase Pox_A32 PF04665.12 ABA79877.1 - 0.1 12.1 0.6 6.9 6.1 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein RsgA_GTPase PF03193.16 ABA79877.1 - 0.15 12.0 2.8 5.7 6.8 0.1 2.4 2 0 0 2 2 2 0 RsgA GTPase MobB PF03205.14 ABA79877.1 - 0.28 11.1 0.8 1.3 8.9 0.2 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 ABA79877.1 - 2.3 8.2 4.4 24 4.9 0.3 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain Sigma54_activat PF00158.26 ABA79877.1 - 4.5 6.9 5.5 5.9 6.6 0.0 2.8 4 0 0 4 4 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.22 ABA79878.1 - 3.8e-26 92.0 18.4 3.8e-26 92.0 18.4 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA79878.1 - 8.8e-10 38.4 0.3 8.8e-10 38.4 0.3 3.5 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 ABA79879.1 - 2.4e-32 112.1 12.4 2.4e-32 112.1 12.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 ABA79880.1 - 7.1e-67 226.0 0.3 1.6e-66 224.8 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Cytochrom_C PF00034.21 ABA79881.1 - 2.1e-10 41.6 0.1 4.4e-10 40.6 0.1 1.6 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA79881.1 - 2e-05 24.8 1.7 8.1e-05 22.9 1.7 1.9 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III PDT PF00800.18 ABA79882.2 - 6.5e-52 176.0 0.0 7.9e-52 175.7 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase Polyketide_cyc2 PF10604.9 ABA79883.1 - 2.8e-10 40.6 0.4 3.4e-10 40.4 0.4 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 ABA79883.1 - 0.035 14.3 0.1 0.37 11.0 0.1 2.2 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport NUDIX-like PF09296.11 ABA79884.1 - 5.6e-20 71.9 0.2 9.5e-20 71.2 0.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain NUDIX PF00293.28 ABA79884.1 - 1.4e-13 51.0 0.1 2.4e-13 50.3 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.11 ABA79884.1 - 7.5e-13 47.9 10.4 1.3e-12 47.2 10.4 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 ABA79884.1 - 0.00061 19.8 0.6 0.0011 19.0 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 ABA79884.1 - 0.1 12.0 2.3 1.6 8.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 ABA79884.1 - 0.61 10.1 3.2 13 5.9 0.8 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.8 ABA79884.1 - 0.61 10.0 10.6 0.17 11.8 2.5 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 ABA79884.1 - 0.92 9.3 3.9 8.5 6.2 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 ABA79884.1 - 1.1 9.2 5.7 4.1 7.4 5.7 1.9 1 1 0 1 1 1 0 Nudix N-terminal LIM PF00412.22 ABA79884.1 - 7 7.0 5.7 80 3.6 5.8 2.1 1 1 0 1 1 1 0 LIM domain 5_nucleotid_C PF02872.18 ABA79885.1 - 1.3e-16 61.3 0.0 1e-15 58.3 0.0 2.0 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 ABA79885.1 - 3.1e-07 31.1 0.0 9e-07 29.6 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.10 ABA79885.1 - 2.5e-05 23.9 2.2 0.0031 17.0 2.2 2.2 1 1 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DNA_pol3_gamma3 PF12169.8 ABA79886.1 - 2.9e-55 186.1 2.4 2.9e-55 186.1 2.4 2.4 2 0 0 2 2 2 1 DNA polymerase III subunits gamma and tau domain III DUF3646 PF12362.8 ABA79886.1 - 2.4e-40 137.4 0.0 5.2e-40 136.3 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase III gamma and tau subunits C terminal DNA_pol3_delta2 PF13177.6 ABA79886.1 - 1e-37 129.4 0.0 2e-37 128.5 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 ABA79886.1 - 1.2e-11 45.1 0.1 1.4e-10 41.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 ABA79886.1 - 2.2e-06 27.5 0.1 8.5e-05 22.3 0.0 2.4 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 ABA79886.1 - 1.2e-05 25.4 0.1 0.00012 22.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA79886.1 - 5.4e-05 23.5 0.1 0.0061 16.8 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA79886.1 - 0.00016 21.5 3.3 0.00037 20.3 0.3 3.1 3 1 0 3 3 3 1 AAA domain AAA_14 PF13173.6 ABA79886.1 - 0.0019 18.2 0.4 0.026 14.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA79886.1 - 0.016 15.6 3.1 0.053 13.9 0.0 3.0 3 1 1 4 4 4 0 AAA ATPase domain AAA_18 PF13238.6 ABA79886.1 - 0.019 15.5 0.0 0.059 13.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 ABA79886.1 - 0.025 14.5 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 ABA79886.1 - 0.028 14.1 0.0 0.073 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 ABA79886.1 - 0.046 12.9 0.4 0.59 9.3 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain DUF815 PF05673.13 ABA79886.1 - 0.061 12.5 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_assoc_2 PF16193.5 ABA79886.1 - 0.24 11.8 1.4 0.55 10.6 0.4 2.1 2 0 0 2 2 2 0 AAA C-terminal domain HTH_Tnp_IS1 PF12759.7 ABA79886.1 - 0.35 10.5 2.5 2.3 7.9 1.8 2.3 2 0 0 2 2 2 0 InsA C-terminal domain AAA_19 PF13245.6 ABA79886.1 - 0.49 10.7 3.9 2 8.8 1.0 2.8 2 1 0 2 2 2 0 AAA domain YbaB_DNA_bd PF02575.16 ABA79887.1 - 6e-29 100.1 3.4 7.5e-29 99.8 3.4 1.0 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family FIST PF08495.10 ABA79887.1 - 0.065 13.2 0.0 0.074 13.1 0.0 1.1 1 0 0 1 1 1 0 FIST N domain SIMPL PF04402.14 ABA79887.1 - 0.099 13.1 1.0 0.15 12.5 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF541) Toprim_4 PF13662.6 ABA79888.1 - 2.1e-25 89.0 0.0 3e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Toprim domain RecR PF02132.15 ABA79888.1 - 4.2e-12 45.4 2.1 8.2e-12 44.5 2.1 1.5 1 0 0 1 1 1 1 RecR protein Toprim PF01751.22 ABA79888.1 - 5.6e-05 23.3 0.0 8.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Toprim domain zn-ribbon_14 PF16503.5 ABA79888.1 - 0.22 11.1 1.7 0.37 10.3 1.7 1.4 1 0 0 1 1 1 0 Zinc-ribbon OpgC_C PF10129.9 ABA79889.2 - 1.4e-12 47.2 27.5 9.1e-07 28.1 15.1 3.0 2 1 0 2 2 2 2 OpgC protein DUF1624 PF07786.12 ABA79889.2 - 8.6e-08 32.0 7.7 8.6e-08 32.0 7.7 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1624) DUF1013 PF06242.11 ABA79890.1 - 1.9e-60 202.9 0.0 2.9e-60 202.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1013) HTH_23 PF13384.6 ABA79890.1 - 0.009 15.8 0.0 3.1 7.7 0.0 2.5 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 ABA79890.1 - 0.04 13.3 0.1 1.8 8.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Crp PF00325.20 ABA79890.1 - 0.16 11.6 0.0 20 5.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Ribonuclease_T2 PF00445.18 ABA79891.1 - 8.9e-12 45.6 0.0 2.9e-11 44.0 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease T2 family ADH_zinc_N PF00107.26 ABA79892.1 - 2e-27 95.7 0.3 3.3e-27 95.0 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA79892.1 - 3.7e-26 92.8 0.1 7.1e-26 91.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA79892.1 - 6.9e-10 38.8 0.0 1.1e-07 31.7 0.0 3.0 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 ABA79892.1 - 0.002 17.6 0.3 0.0031 17.0 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase COQ9 PF08511.11 ABA79893.1 - 1.1e-31 108.4 0.4 1.9e-31 107.7 0.4 1.4 1 0 0 1 1 1 1 COQ9 Ribosomal_S21 PF01165.20 ABA79894.1 - 1.8e-19 69.2 8.7 1.8e-19 69.2 8.7 1.8 1 1 1 2 2 2 1 Ribosomal protein S21 DUF2188 PF09954.9 ABA79894.1 - 0.05 13.8 1.5 0.05 13.8 1.5 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) CAP59_mtransfer PF11735.8 ABA79894.1 - 0.067 12.9 1.2 0.068 12.8 1.2 1.0 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 PS_Dcarbxylase PF02666.15 ABA79895.1 - 3.3e-32 111.7 0.0 4.9e-31 107.8 0.0 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase CDP-OH_P_transf PF01066.21 ABA79896.1 - 2.1e-14 54.1 3.3 2.1e-14 54.1 3.3 3.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Methyltransf_11 PF08241.12 ABA79897.1 - 7.5e-22 77.8 0.0 1.2e-21 77.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA79897.1 - 1.3e-20 73.9 0.0 2.1e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79897.1 - 1e-15 58.0 0.0 1.3e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79897.1 - 7.6e-14 51.8 0.0 9e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 ABA79897.1 - 3.2e-13 49.6 0.0 3.7e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 ABA79897.1 - 5e-12 46.4 0.0 7.3e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 ABA79897.1 - 8.9e-07 28.7 0.0 1.2e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 ABA79897.1 - 1.4e-06 27.9 0.0 1.7e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 ABA79897.1 - 3.7e-05 23.5 0.0 0.00021 21.1 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 ABA79897.1 - 0.0037 17.0 0.0 0.0052 16.6 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 ABA79897.1 - 0.0085 15.8 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit DUF2194 PF09960.9 ABA79897.1 - 0.058 11.7 0.0 0.069 11.5 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) ComA PF02679.15 ABA79897.1 - 0.15 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) AsnC_trans_reg PF01037.21 ABA79898.1 - 6e-23 80.6 0.0 9.7e-23 79.9 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 ABA79898.1 - 1.9e-22 78.5 0.2 3e-22 77.9 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 ABA79898.1 - 2e-19 69.1 0.9 4.3e-19 68.1 0.9 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA79898.1 - 2.7e-08 33.6 0.4 6.8e-08 32.3 0.3 1.7 2 0 0 2 2 2 1 MarR family MarR PF01047.22 ABA79898.1 - 3.8e-07 29.9 0.0 6.7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 ABA79898.1 - 7e-07 29.0 0.1 2.3e-06 27.3 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 ABA79898.1 - 3.1e-06 27.0 0.1 4.9e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 ABA79898.1 - 3.8e-06 27.0 0.0 1.1e-05 25.5 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 ABA79898.1 - 1.2e-05 25.2 0.4 6.7e-05 22.8 0.1 2.1 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 ABA79898.1 - 0.00086 19.1 0.0 0.0034 17.2 0.0 1.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 ABA79898.1 - 0.00091 19.3 0.2 0.0017 18.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 ABA79898.1 - 0.0012 19.0 0.0 0.0029 17.7 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 ABA79898.1 - 0.0014 18.6 0.1 0.0026 17.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_39 PF14090.6 ABA79898.1 - 0.0029 17.3 0.1 0.0056 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 ABA79898.1 - 0.0031 17.8 0.0 0.007 16.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.16 ABA79898.1 - 0.011 15.5 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.6 ABA79898.1 - 0.019 15.5 0.1 0.035 14.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 ABA79898.1 - 0.02 14.8 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 ABA79898.1 - 0.022 14.6 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Ribosomal_S25 PF03297.15 ABA79898.1 - 0.08 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 S25 ribosomal protein HTH_DeoR PF08220.12 ABA79898.1 - 0.092 12.5 0.0 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain PCI PF01399.27 ABA79898.1 - 0.12 12.9 0.0 0.42 11.1 0.0 1.8 2 1 0 2 2 2 0 PCI domain DprA_WH PF17782.1 ABA79898.1 - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 DprA winged helix domain AbiEi_4 PF13338.6 ABA79898.1 - 0.17 12.1 1.7 1.1 9.5 0.1 2.6 2 1 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin AlaDh_PNT_C PF01262.21 ABA79899.1 - 4.3e-81 271.3 0.4 5.6e-81 270.9 0.4 1.1 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 ABA79899.1 - 4.2e-47 159.9 0.1 7.5e-47 159.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain Pyr_redox PF00070.27 ABA79899.1 - 1.8e-07 31.6 0.1 3.4e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 ABA79899.1 - 2.6e-07 30.2 0.0 6.2e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 ABA79899.1 - 6.8e-07 28.8 0.3 9.4e-07 28.3 0.3 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 ABA79899.1 - 0.00016 21.4 0.8 0.00016 21.4 0.8 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 ABA79899.1 - 0.0004 20.5 0.0 0.00072 19.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 ABA79899.1 - 0.0013 18.9 0.5 0.011 16.0 0.2 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 ABA79899.1 - 0.0013 18.6 0.4 0.0025 17.7 0.4 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 ABA79899.1 - 0.0024 17.0 1.2 0.0031 16.6 1.2 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 ABA79899.1 - 0.0041 17.5 0.2 0.0079 16.6 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 ABA79899.1 - 0.013 15.8 0.2 0.029 14.6 0.2 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_oxidored PF12831.7 ABA79899.1 - 0.055 12.8 4.6 0.089 12.1 4.6 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 ABA79899.1 - 0.055 12.2 1.2 0.085 11.5 1.2 1.2 1 0 0 1 1 1 0 HI0933-like protein TrkA_N PF02254.18 ABA79899.1 - 0.077 13.3 0.2 0.33 11.2 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.6 ABA79899.1 - 0.09 13.3 0.1 0.15 12.5 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain FAD_binding_3 PF01494.19 ABA79899.1 - 0.1 11.9 0.9 0.15 11.3 0.9 1.2 1 0 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_N PF03721.14 ABA79899.1 - 0.1 12.2 0.2 0.17 11.4 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.6 ABA79899.1 - 0.31 11.3 3.9 0.27 11.5 0.4 2.6 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain MscL PF01741.18 ABA79900.1 - 3.4e-45 153.2 1.9 3.9e-45 153.1 1.9 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF4381 PF14316.6 ABA79900.1 - 0.14 12.4 0.0 0.19 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) RTX PF02382.15 ABA79900.1 - 3.2 7.3 5.2 12 5.5 0.2 2.1 2 0 0 2 2 2 0 N-terminal domain in RTX protein AhpC-TSA PF00578.21 ABA79901.1 - 3.5e-17 62.5 0.0 4.7e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 ABA79901.1 - 1.2e-16 60.7 0.0 1.5e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 ABA79901.1 - 2.9e-11 43.5 0.0 5.5e-11 42.7 0.0 1.4 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin PF00085.20 ABA79901.1 - 1.2e-07 31.6 0.0 3e-06 27.1 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 ABA79901.1 - 1.4e-05 25.5 0.0 2.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain SCO1-SenC PF02630.14 ABA79901.1 - 0.057 13.3 0.0 0.073 13.0 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Lyase_1 PF00206.20 ABA79902.1 - 4e-77 259.7 0.0 5.7e-77 259.2 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 ABA79902.1 - 5.9e-25 87.8 0.1 1.6e-24 86.4 0.1 1.8 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal DUF2834 PF11196.8 ABA79904.1 - 1.1e-25 89.8 4.9 1.2e-25 89.6 4.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2834) Orn_Arg_deC_N PF02784.16 ABA79905.1 - 1e-59 201.9 0.0 1.3e-59 201.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 ABA79905.1 - 1.7e-29 102.0 0.0 2.3e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 ABA79905.1 - 6.8e-08 32.4 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain DUF4175 PF13779.6 ABA79906.1 - 2.6e-249 829.5 45.9 3e-249 829.3 45.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4175) EzrA PF06160.12 ABA79906.1 - 0.016 13.4 7.1 0.21 9.7 6.7 2.0 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF2791 PF10923.8 ABA79906.1 - 0.035 12.9 2.9 0.38 9.5 0.1 2.2 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) DUF2813 PF11398.8 ABA79906.1 - 0.1 11.8 3.2 0.16 11.2 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Cytochrom_B562 PF07361.11 ABA79906.1 - 0.12 13.0 15.5 0.14 12.8 9.9 2.9 2 1 1 3 3 3 0 Cytochrome b562 DUF4363 PF14276.6 ABA79906.1 - 0.19 11.8 6.5 0.9 9.7 0.2 3.1 2 1 2 4 4 4 0 Domain of unknown function (DUF4363) PIN_8 PF18476.1 ABA79906.1 - 0.42 10.4 4.9 0.43 10.4 3.3 1.7 2 0 0 2 2 2 0 PIN like domain PSD5 PF07637.11 ABA79906.1 - 0.43 11.0 3.3 1.1 9.6 0.2 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) COMM_domain PF07258.14 ABA79906.1 - 0.99 9.6 5.9 0.11 12.6 1.1 1.9 2 0 0 2 2 1 0 COMM domain Nup188 PF10487.9 ABA79906.1 - 1.5 6.6 2.5 2.1 6.2 2.5 1.0 1 0 0 1 1 1 0 Nucleoporin subcomplex protein binding to Pom34 Borrelia_P83 PF05262.11 ABA79906.1 - 1.8 7.0 6.2 3.3 6.1 6.2 1.3 1 0 0 1 1 1 0 Borrelia P83/100 protein LUC7 PF03194.15 ABA79906.1 - 2 8.0 15.3 0.16 11.6 8.5 2.1 2 0 0 2 2 2 0 LUC7 N_terminus BshC PF10079.9 ABA79906.1 - 2.9 6.5 7.8 4.4 5.9 7.8 1.2 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC YfdX PF10938.8 ABA79906.1 - 3.4 7.6 8.8 28 4.6 0.2 3.1 2 1 1 3 3 3 0 YfdX protein FapA PF03961.13 ABA79906.1 - 4.1 5.9 5.1 6.7 5.2 5.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Cob_adeno_trans PF01923.18 ABA79906.1 - 5.8 7.0 7.1 1.2 9.2 3.2 1.8 2 0 0 2 2 2 0 Cobalamin adenosyltransferase zinc_ribbon_4 PF13717.6 ABA79907.2 - 6.6e-15 54.7 0.1 1.1e-14 54.0 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 ABA79907.2 - 0.00026 20.7 0.0 0.0004 20.1 0.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain ADK_lid PF05191.14 ABA79907.2 - 0.0024 17.8 0.8 0.0045 16.9 0.8 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.6 ABA79907.2 - 0.095 12.5 1.0 3.4 7.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 ABA79907.2 - 0.22 11.5 0.3 0.36 10.8 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 ABA79907.2 - 2.3 7.7 7.1 4.1e+02 0.6 7.1 2.4 1 1 0 1 1 1 0 zinc-ribbon domain ABC_tran PF00005.27 ABA79909.1 - 6.2e-29 101.3 0.0 8.8e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79909.1 - 8.8e-07 29.0 0.4 0.008 16.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA79909.1 - 0.00014 21.5 0.1 0.00033 20.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA79909.1 - 0.00063 19.4 0.1 0.0016 18.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 ABA79909.1 - 0.00083 18.9 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA79909.1 - 0.0029 18.0 1.4 0.012 16.0 1.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA79909.1 - 0.0087 16.3 0.3 0.056 13.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA79909.1 - 0.017 15.0 0.2 0.058 13.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 ABA79909.1 - 0.035 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 NTPase ATPase_2 PF01637.18 ABA79909.1 - 0.069 13.1 0.0 0.12 12.3 0.0 1.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 ABA79909.1 - 0.075 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA79909.1 - 0.075 12.7 0.0 0.24 11.1 0.0 1.9 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 ABA79909.1 - 0.14 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA79909.1 - 0.25 11.8 0.1 0.41 11.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain FtsX PF02687.21 ABA79910.1 - 0.056 13.9 8.8 0.052 14.0 1.8 3.0 3 0 0 3 3 3 0 FtsX-like permease family Acyltransferase PF01553.21 ABA79911.1 - 7.1e-19 67.8 0.0 1.1e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase Acetyltransf_1 PF00583.25 ABA79912.1 - 1.4e-11 44.6 0.1 2.3e-11 44.0 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 ABA79912.1 - 1.2e-08 35.0 0.0 6.5e-08 32.6 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA79912.1 - 1.4e-07 31.8 0.0 2e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA79912.1 - 2.6e-06 27.3 0.0 4.1e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 ABA79912.1 - 0.013 15.3 0.3 0.038 13.7 0.2 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ MobB PF03205.14 ABA79913.1 - 8.6e-44 148.7 0.0 1.2e-43 148.2 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTP_transf_3 PF12804.7 ABA79914.1 - 3.5e-31 108.7 7.2 4.3e-31 108.4 7.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain AzlC PF03591.14 ABA79915.1 - 1.6e-31 109.5 6.2 1.6e-31 109.5 6.2 2.0 2 0 0 2 2 2 1 AzlC protein Ctr PF04145.15 ABA79915.1 - 0.15 12.7 0.3 0.23 12.1 0.3 1.5 1 0 0 1 1 1 0 Ctr copper transporter family AzlD PF05437.12 ABA79916.1 - 9.1e-21 73.9 12.0 1e-20 73.7 12.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) COX4_pro_2 PF07835.12 ABA79918.1 - 2.2e-18 66.1 1.6 2.6e-18 65.8 1.6 1.1 1 0 0 1 1 1 1 Bacterial aa3 type cytochrome c oxidase subunit IV Lactamase_B PF00753.27 ABA79919.1 - 3e-21 76.3 6.5 3.1e-20 73.0 6.5 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA79919.1 - 0.00019 21.0 0.0 0.0011 18.6 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Acyl-CoA_dh_1 PF00441.24 ABA79920.1 - 3.4e-26 92.2 10.3 3.4e-26 92.2 10.3 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 ABA79920.1 - 4.9e-18 65.1 0.0 2.7e-17 62.8 0.0 2.2 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 ABA79920.1 - 7.5e-13 49.1 0.1 3.3e-12 47.1 0.1 2.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_C PF12806.7 ABA79920.1 - 2.9e-09 37.1 6.4 3.6e-09 36.8 2.8 2.8 2 1 0 2 2 2 1 Acetyl-CoA dehydrogenase C-terminal like AcylCoA_DH_N PF12418.8 ABA79920.1 - 2.4e-08 33.8 0.5 5.3e-08 32.8 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase N terminal Acyl-CoA_dh_2 PF08028.11 ABA79920.1 - 1.8e-06 28.3 5.7 1.8e-06 28.3 5.7 2.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Sua5_yciO_yrdC PF01300.18 ABA79921.1 - 1e-55 188.0 0.0 1.3e-55 187.7 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 ABA79921.1 - 2.5e-21 76.6 0.1 1.7e-20 73.9 0.1 2.0 1 1 0 1 1 1 1 Putative GTP-binding controlling metal-binding Adenine_glyco PF03352.13 ABA79922.1 - 2.8e-73 245.5 0.0 3.3e-73 245.2 0.0 1.0 1 0 0 1 1 1 1 Methyladenine glycosylase Thiolase_N PF00108.23 ABA79923.2 - 3.4e-105 351.1 9.1 4.4e-105 350.7 9.1 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 ABA79923.2 - 7.1e-51 171.0 0.7 7.1e-51 171.0 0.7 2.6 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 ABA79923.2 - 0.0013 18.3 1.5 0.0013 18.3 1.5 3.3 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 ABA79923.2 - 0.019 14.8 1.3 1.7 8.6 0.1 2.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III B12-binding PF02310.19 ABA79923.2 - 0.038 14.0 0.2 13 5.9 0.0 2.7 2 0 0 2 2 2 0 B12 binding domain adh_short_C2 PF13561.6 ABA79924.1 - 3.9e-60 203.3 3.9 5e-60 203.0 3.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA79924.1 - 1.8e-55 187.4 2.9 2.1e-55 187.2 2.9 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA79924.1 - 1.1e-16 61.3 0.7 1.8e-16 60.5 0.7 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA79924.1 - 0.0058 16.1 0.1 0.0089 15.5 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_transf_28 PF03033.20 ABA79924.1 - 0.05 13.6 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain LytR_C PF13399.6 ABA79924.1 - 0.19 12.8 2.5 0.36 11.8 0.7 2.1 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator MTS PF05175.14 ABA79925.1 - 2.8e-14 53.0 0.1 1.2e-12 47.7 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 ABA79925.1 - 2.7e-11 44.0 0.0 6.4e-11 42.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA79925.1 - 2.6e-08 33.8 0.0 3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79925.1 - 1.1e-07 32.4 0.0 3.9e-07 30.6 0.0 1.9 3 0 0 3 3 2 1 Methyltransferase domain PrmA PF06325.13 ABA79925.1 - 4.4e-05 23.0 0.1 5.8e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 ABA79925.1 - 0.00067 20.4 0.0 0.0024 18.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 ABA79925.1 - 0.00075 19.2 0.0 0.00095 18.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 ABA79925.1 - 0.0025 17.2 0.0 0.003 16.9 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_23 PF13489.6 ABA79925.1 - 0.0043 16.9 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 ABA79925.1 - 0.0097 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Met_10 PF02475.16 ABA79925.1 - 0.022 14.5 0.0 0.03 14.1 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_24 PF13578.6 ABA79925.1 - 0.051 14.6 0.0 0.16 13.0 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 ABA79925.1 - 0.097 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) LacAB_rpiB PF02502.18 ABA79925.1 - 0.15 12.0 0.1 0.22 11.5 0.1 1.2 1 0 0 1 1 1 0 Ribose/Galactose Isomerase Methyltransf_4 PF02390.17 ABA79925.1 - 0.17 11.3 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF2007 PF09413.10 ABA79926.1 - 4.2e-17 62.1 0.0 4.9e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Putative prokaryotic signal transducing protein polyprenyl_synt PF00348.17 ABA79927.1 - 1.1e-70 237.6 0.0 1.3e-70 237.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase MmcB-like PF06319.12 ABA79928.2 - 1.1e-47 161.4 0.0 1.4e-47 161.1 0.0 1.0 1 0 0 1 1 1 1 DNA repair protein MmcB-like NERD PF08378.11 ABA79928.2 - 0.008 16.6 0.0 0.01 16.3 0.0 1.2 1 0 0 1 1 1 1 Nuclease-related domain MTES_1575 PF18741.1 ABA79928.2 - 0.049 13.8 0.0 0.082 13.1 0.0 1.3 1 0 0 1 1 1 0 REase_MTES_1575 Acetyltransf_1 PF00583.25 ABA79930.1 - 8.6e-11 42.1 0.1 1.1e-10 41.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 ABA79930.1 - 2e-10 40.7 0.0 2.5e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA79930.1 - 7.2e-07 29.6 0.0 1.3e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 ABA79930.1 - 9.7e-05 22.5 2.6 0.00013 22.1 2.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 ABA79930.1 - 0.00011 22.4 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA79930.1 - 0.0004 20.5 0.0 0.00073 19.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 ABA79930.1 - 0.0012 18.6 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 ABA79930.1 - 0.0013 18.7 0.0 0.0031 17.4 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 ABA79930.1 - 0.0062 17.2 0.0 0.0074 17.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA79930.1 - 0.15 12.2 0.0 0.55 10.3 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF481 PF04338.12 ABA79931.1 - 2.3e-48 165.0 4.9 2.8e-48 164.8 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF481 DUF2561 PF10812.8 ABA79932.1 - 0.013 15.6 0.2 0.013 15.5 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) Phage_holin_3_6 PF07332.11 ABA79932.1 - 0.049 13.7 2.2 0.06 13.4 2.2 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Fun_ATP-synt_8 PF05933.13 ABA79932.1 - 0.13 12.5 0.9 0.13 12.5 0.9 1.7 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) NusB PF01029.18 ABA79933.2 - 3.4e-29 101.8 0.0 3.9e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 NusB family NAAA-beta PF15508.6 ABA79933.2 - 0.09 13.1 0.0 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase DMRL_synthase PF00885.19 ABA79934.1 - 3.8e-37 127.2 0.1 4.9e-37 126.9 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DHBP_synthase PF00926.19 ABA79935.1 - 1.1e-82 276.2 0.1 1.6e-82 275.7 0.1 1.3 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 ABA79935.1 - 2.3e-25 89.1 0.0 5.3e-23 81.4 0.0 2.6 1 1 0 1 1 1 1 GTP cyclohydrolase II Lum_binding PF00677.17 ABA79937.1 - 3.6e-46 155.1 0.0 6.3e-22 77.4 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain Poly_export PF02563.16 ABA79938.1 - 7.4e-16 58.1 0.8 2.4e-15 56.5 0.4 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis/export protein SLBB PF10531.9 ABA79938.1 - 6.3e-07 29.2 0.6 0.00069 19.4 0.3 2.9 2 0 0 2 2 2 2 SLBB domain PUA_3 PF17785.1 ABA79938.1 - 0.051 13.4 0.0 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 PUA-like domain HTH_27 PF13463.6 ABA79939.2 - 1.3e-16 60.9 0.0 2.7e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 ABA79939.2 - 4.7e-09 36.0 0.0 1.3e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 ABA79939.2 - 0.00021 21.4 0.0 0.00034 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 ABA79939.2 - 0.00028 20.8 0.0 0.00068 19.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 ABA79939.2 - 0.0008 19.4 0.0 0.0021 18.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 ABA79939.2 - 0.048 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Sdh5 PF03937.16 ABA79940.1 - 3.5e-23 81.4 0.1 4.3e-23 81.1 0.1 1.1 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase HTH_3 PF01381.22 ABA79941.1 - 3.2e-11 43.1 1.2 4.6e-11 42.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 ABA79941.1 - 7.4e-11 41.9 0.7 1.3e-10 41.2 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 ABA79941.1 - 1.7e-08 34.7 3.4 1.7e-08 34.7 3.4 2.3 1 1 2 3 3 3 1 Helix-turn-helix domain HTH_25 PF13413.6 ABA79941.1 - 2.1e-05 24.3 1.2 3.7e-05 23.5 0.3 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 ABA79941.1 - 0.0023 18.0 0.0 0.0052 16.8 0.0 1.6 1 1 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_Tnp_1 PF01527.20 ABA79941.1 - 0.1 12.9 1.3 0.43 10.9 1.3 2.1 1 1 0 1 1 1 0 Transposase HTH_23 PF13384.6 ABA79941.1 - 0.18 11.6 1.6 1.2 9.0 0.0 2.8 3 1 0 3 3 3 0 Homeodomain-like domain APG6_N PF17675.1 ABA79941.1 - 0.92 10.0 5.1 0.88 10.1 4.2 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region Aminotran_1_2 PF00155.21 ABA79942.1 - 2.1e-79 267.3 0.0 2.4e-79 267.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 ABA79942.1 - 1.7e-09 37.5 0.0 3.1e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 ABA79942.1 - 0.062 11.8 0.0 0.093 11.2 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 ABA79942.1 - 0.08 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V MatE PF01554.18 ABA79943.1 - 5.5e-55 185.4 25.9 2.3e-30 105.4 8.8 3.2 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 ABA79943.1 - 3.5e-09 36.9 18.3 3.5e-09 36.9 18.3 4.9 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Methyltransf_25 PF13649.6 ABA79944.1 - 5.6e-13 49.4 0.0 1.3e-12 48.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA79944.1 - 1.4e-09 38.5 0.0 2.6e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 ABA79944.1 - 5.5e-07 29.2 0.0 5.7e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_31 PF13847.6 ABA79944.1 - 7.7e-06 25.8 0.0 9.7e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA79944.1 - 1.9e-05 24.5 0.0 3.9e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA79944.1 - 0.001 19.8 0.0 0.0018 19.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 ABA79944.1 - 0.0054 16.4 0.0 0.0077 15.9 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 ABA79944.1 - 0.032 13.8 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain NodS PF05401.11 ABA79944.1 - 0.042 13.5 0.0 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Closter_coat PF01785.17 ABA79944.1 - 0.14 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Closterovirus coat protein PPK2 PF03976.14 ABA79945.1 - 2.8e-104 347.6 0.5 3.3e-104 347.4 0.5 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Thymidylate_kin PF02223.17 ABA79945.1 - 0.072 12.8 0.0 12 5.6 0.0 2.4 2 1 0 2 2 2 0 Thymidylate kinase LigA PF07746.11 ABA79945.1 - 0.097 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit GerE PF00196.19 ABA79946.2 - 1e-05 25.0 0.0 1.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family PrmC_N PF17827.1 ABA79946.2 - 0.056 14.0 1.3 1.3 9.7 0.1 3.0 2 0 0 2 2 2 0 PrmC N-terminal domain GST_C PF00043.25 ABA79948.1 - 2.8e-13 49.9 0.0 4.1e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 ABA79948.1 - 1.5e-12 47.7 0.0 6.5e-11 42.4 0.0 2.3 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 ABA79948.1 - 1.3e-10 41.6 0.0 2.7e-10 40.5 0.0 1.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 ABA79948.1 - 2e-09 37.5 0.0 3e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 ABA79948.1 - 2e-08 34.1 2.2 3.7e-08 33.3 2.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 ABA79948.1 - 1.7e-06 28.2 0.0 2.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DNA_gyraseB PF00204.25 ABA79949.2 - 8.7e-43 145.8 0.0 1.3e-42 145.2 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 ABA79949.2 - 2.2e-24 85.4 0.2 5.7e-24 84.1 0.2 1.8 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 ABA79949.2 - 6e-23 81.5 0.0 1.4e-22 80.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 ABA79949.2 - 1.5e-15 57.3 0.0 3.1e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 ABA79949.2 - 0.00012 21.9 0.0 0.00026 20.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA79949.2 - 0.024 14.6 0.1 0.07 13.1 0.1 1.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain UreE_N PF02814.15 ABA79949.2 - 0.064 12.9 0.5 0.15 11.7 0.5 1.6 1 0 0 1 1 1 0 UreE urease accessory protein, N-terminal domain UxuA PF03786.13 ABA79950.1 - 1.8e-116 388.8 0.0 2.1e-116 388.6 0.0 1.0 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 ABA79950.1 - 5.1e-10 39.1 0.0 1.5e-09 37.6 0.0 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel zf-H2C2_5 PF13909.6 ABA79950.1 - 0.17 11.7 0.1 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 C2H2-type zinc-finger domain Tex_N PF09371.10 ABA79951.1 - 9.5e-69 230.7 0.6 1.8e-68 229.8 0.6 1.5 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 ABA79951.1 - 7.3e-52 175.1 0.1 1.3e-51 174.3 0.1 1.4 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 ABA79951.1 - 4e-27 94.3 0.0 1.2e-26 92.7 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_9 PF17674.1 ABA79951.1 - 9.9e-24 84.0 0.0 3.5e-23 82.3 0.0 2.1 1 0 0 1 1 1 1 HHH domain S1 PF00575.23 ABA79951.1 - 8.8e-20 70.8 2.3 1.6e-19 70.0 2.3 1.5 1 0 0 1 1 1 1 S1 RNA binding domain HHH_7 PF14635.6 ABA79951.1 - 2e-08 34.5 0.0 4.6e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif YqgF PF14639.6 ABA79951.1 - 1.1e-06 28.5 0.1 3.4e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Holliday-junction resolvase-like of SPT6 HHH_6 PF14579.6 ABA79951.1 - 8e-05 22.8 0.0 0.00036 20.7 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif T2SSK PF03934.13 ABA79951.1 - 0.0016 17.9 0.0 0.0039 16.6 0.0 1.6 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein K HHH PF00633.23 ABA79951.1 - 0.0025 17.6 1.8 0.0053 16.6 0.0 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix motif DUF460 PF04312.13 ABA79951.1 - 0.0083 15.8 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) RNase_II_C_S1 PF18614.1 ABA79951.1 - 2.4 8.2 9.6 0.042 13.8 1.2 2.5 3 0 0 3 3 3 0 RNase II-type exonuclease C-terminal S1 domain Cytochrome_CBB3 PF13442.6 ABA79952.2 - 5.9e-06 26.5 0.0 8.9e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA79952.2 - 0.041 15.0 0.0 0.051 14.7 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c ABC_tran PF00005.27 ABA79953.1 - 2e-26 93.2 0.0 2.5e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79953.1 - 0.00026 20.9 0.0 0.16 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA79953.1 - 0.04 14.3 1.5 0.082 13.3 1.5 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 ABA79953.1 - 0.042 13.6 0.1 0.087 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA79953.1 - 0.046 13.3 0.0 0.13 11.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA79953.1 - 0.19 11.6 0.1 0.32 10.9 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase MacB_PCD PF12704.7 ABA79954.1 - 7.4e-17 62.3 7.1 7.4e-17 62.3 7.1 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 ABA79954.1 - 8.8e-12 45.3 1.9 8.8e-12 45.3 1.9 3.2 3 0 0 3 3 3 1 FtsX-like permease family BCHF PF07284.11 ABA79954.1 - 0.032 14.3 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) tRNA-synt_2b PF00587.25 ABA79955.1 - 4.6e-35 121.2 0.0 7e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 ABA79955.1 - 7.4e-16 58.1 0.0 1.6e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain AI-2E_transport PF01594.16 ABA79956.2 - 3.2e-62 210.6 28.1 4e-62 210.2 28.1 1.0 1 0 0 1 1 1 1 AI-2E family transporter TRAP-gamma PF07074.12 ABA79956.2 - 0.012 15.1 0.5 0.027 14.0 0.0 1.8 2 0 0 2 2 2 0 Translocon-associated protein, gamma subunit (TRAP-gamma) Bac_export_2 PF01312.19 ABA79956.2 - 9.3 5.3 9.8 2.1 7.5 5.7 1.9 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family Bac_DnaA PF00308.18 ABA79957.1 - 2.7e-09 37.2 0.0 3.3e-06 27.1 0.0 2.0 2 0 0 2 2 2 2 Bacterial dnaA protein IstB_IS21 PF01695.17 ABA79957.1 - 0.00026 20.8 0.0 0.032 14.0 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.6 ABA79957.1 - 0.0066 16.8 0.6 0.011 16.1 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA79957.1 - 0.0082 16.4 0.0 0.093 13.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 ABA79957.1 - 0.0088 16.5 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 ABA79957.1 - 0.013 15.6 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 ABA79957.1 - 0.06 13.1 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_8 PF12780.7 ABA79957.1 - 0.25 10.6 0.0 0.4 10.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 PP_kinase_C_1 PF17941.1 ABA79958.1 - 4.5e-73 244.3 0.0 9e-73 243.3 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 ABA79958.1 - 3.6e-58 195.8 0.0 2.6e-57 193.0 0.0 2.0 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 ABA79958.1 - 7.3e-58 195.5 0.0 1.1e-57 195.0 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 ABA79958.1 - 1.3e-36 125.2 0.1 2.7e-36 124.1 0.1 1.6 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 ABA79958.1 - 3e-08 33.6 0.0 0.0035 17.2 0.0 2.8 2 1 0 2 2 2 2 PLD-like domain SURNod19 PF07712.12 ABA79958.1 - 0.25 10.1 0.0 0.42 9.3 0.0 1.2 1 0 0 1 1 1 0 Stress up-regulated Nod 19 Ppx-GppA PF02541.16 ABA79959.1 - 1.4e-41 142.9 0.0 1.8e-41 142.5 0.0 1.1 1 0 0 1 1 1 1 Ppx/GppA phosphatase family BcrAD_BadFG PF01869.20 ABA79959.1 - 0.01 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Glyoxalase_3 PF13468.6 ABA79960.1 - 2.8e-50 170.8 0.1 3.4e-50 170.6 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 ABA79960.1 - 0.0051 17.1 0.0 0.0082 16.4 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Acetyltransf_4 PF13420.7 ABA79961.1 - 4.4e-19 69.1 0.0 4.9e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA79961.1 - 5.8e-14 52.3 0.0 7.2e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 ABA79961.1 - 2.6e-07 31.4 0.0 3.1e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA79961.1 - 4.2e-07 30.0 0.0 5.7e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA79961.1 - 6.2e-06 26.5 0.0 9.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA79961.1 - 3.7e-05 23.8 0.0 5.7e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 ABA79961.1 - 0.00056 19.8 0.0 0.00089 19.2 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein TerB PF05099.13 ABA79962.1 - 6e-41 139.8 0.6 8.3e-41 139.3 0.6 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TerB DnaJ PF00226.31 ABA79962.1 - 1.8e-08 34.4 0.0 1.2e-07 31.7 0.0 2.1 2 0 0 2 2 2 1 DnaJ domain FGase PF05013.12 ABA79962.1 - 0.19 11.9 3.3 2.6 8.2 0.1 2.5 1 1 2 3 3 3 0 N-formylglutamate amidohydrolase Exo_endo_phos PF03372.23 ABA79963.1 - 0.002 17.7 0.0 0.01 15.4 0.0 2.2 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family DUF2264 PF10022.9 ABA79963.1 - 0.037 13.1 0.0 0.55 9.3 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2264) AAA_lid_3 PF17862.1 ABA79965.2 - 0.02 14.7 0.2 0.047 13.5 0.2 1.6 1 0 0 1 1 1 0 AAA+ lid domain Aminotran_1_2 PF00155.21 ABA79966.1 - 1.9e-19 70.1 0.0 3.3e-19 69.3 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 ABA79967.1 - 6.3e-22 78.7 0.0 8.6e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 ABA79967.1 - 4.6e-08 33.4 0.1 8e-08 32.7 0.1 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 ABA79967.1 - 1.3e-07 32.0 0.0 2.2e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 ABA79967.1 - 0.00012 22.2 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PqqD PF05402.12 ABA79968.1 - 3e-11 43.5 0.0 4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) TENA_THI-4 PF03070.16 ABA79969.1 - 4.9e-54 183.3 0.0 5.6e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF3110 PF11360.8 ABA79969.1 - 0.0018 18.4 0.0 0.0043 17.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3110) Lactamase_B_2 PF12706.7 ABA79970.1 - 3e-50 170.5 0.0 3.6e-50 170.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PqqA PF08042.11 ABA79971.1 - 6.5e-10 38.6 0.9 7.5e-10 38.5 0.9 1.1 1 0 0 1 1 1 1 PqqA family HTH_1 PF00126.27 ABA79972.2 - 4.3e-20 71.4 0.1 1.3e-19 69.9 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 ABA79972.2 - 1.4e-19 70.3 5.5 1.4e-19 70.3 5.5 1.5 2 0 0 2 2 2 1 LysR substrate binding domain YCII PF03795.14 ABA79973.1 - 8.4e-16 58.2 0.0 1.2e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 YCII-related domain GATase_3 PF07685.14 ABA79974.1 - 5.6e-57 192.5 0.0 7.4e-57 192.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 ABA79974.1 - 2.4e-19 69.6 0.0 3.9e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 ABA79974.1 - 5.8e-17 62.2 0.0 2.3e-16 60.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain MobB PF03205.14 ABA79974.1 - 0.19 11.6 0.0 9.2 6.2 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B tRNA-synt_1c PF00749.21 ABA79976.1 - 4.4e-72 242.6 0.0 5.1e-72 242.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.18 ABA79976.1 - 0.0013 17.8 0.0 0.99 8.2 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (K) AbiEi_4 PF13338.6 ABA79976.1 - 0.19 11.9 1.5 0.5 10.6 0.1 2.3 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Zincin_1 PF06262.11 ABA79977.1 - 1.7e-32 111.4 0.1 2.2e-32 111.0 0.1 1.2 1 0 0 1 1 1 1 Zincin-like metallopeptidase DUF3810 PF12725.7 ABA79977.1 - 0.19 11.0 0.2 0.25 10.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Lactamase_B PF00753.27 ABA79978.1 - 9.1e-19 68.2 3.4 1.5e-18 67.5 3.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA79978.1 - 6.7e-07 29.0 0.3 1.1e-06 28.3 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 ABA79978.1 - 0.014 14.8 0.0 0.62 9.5 0.0 2.1 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain DUF167 PF02594.16 ABA79979.1 - 2.3e-22 78.9 0.3 2.6e-22 78.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Hist_deacetyl PF00850.19 ABA79980.1 - 3.7e-70 236.8 0.0 6.5e-70 236.0 0.0 1.4 1 1 0 1 1 1 1 Histone deacetylase domain Peptidase_M19 PF01244.21 ABA79981.1 - 1.2e-94 317.1 0.0 1.4e-94 316.9 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) ABC_tran PF00005.27 ABA79982.1 - 6.3e-33 114.2 0.0 8.1e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79982.1 - 1.1e-11 45.2 0.4 2.3e-06 27.7 0.0 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA79982.1 - 2.8e-06 26.9 0.1 0.02 14.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA79982.1 - 0.00018 21.2 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA79982.1 - 0.00024 21.5 0.1 0.00045 20.7 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA79982.1 - 0.00069 19.9 0.1 0.0028 17.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA79982.1 - 0.0012 19.3 0.0 0.0018 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 ABA79982.1 - 0.0035 17.8 0.0 0.054 13.9 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA79982.1 - 0.0074 16.3 0.1 3.8 7.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Dynamin_N PF00350.23 ABA79982.1 - 0.016 15.2 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Dynamin family MMR_HSR1 PF01926.23 ABA79982.1 - 0.017 15.2 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase TniB PF05621.11 ABA79982.1 - 0.018 14.4 0.0 2.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein FtsK_SpoIIIE PF01580.18 ABA79982.1 - 0.037 13.4 0.1 0.067 12.5 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_ATPase PF09818.9 ABA79982.1 - 0.041 12.7 0.1 3.1 6.5 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 ABA79982.1 - 0.062 13.5 0.1 0.14 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 ABA79982.1 - 0.076 13.3 0.2 0.58 10.4 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 ABA79982.1 - 0.078 12.9 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 ABA79982.1 - 0.14 12.1 0.4 0.9 9.4 0.0 2.2 2 1 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 ABA79983.1 - 3e-22 79.6 0.0 3.8e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA79983.1 - 7.9e-06 25.9 0.2 0.00039 20.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 ABA79983.1 - 4.7e-05 23.8 0.0 8.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 ABA79983.1 - 0.052 13.0 0.7 3.5 7.0 0.1 2.6 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 ABA79983.1 - 0.24 11.4 0.2 0.64 10.1 0.2 1.5 2 0 0 2 2 2 0 Helicase HerA, central domain BPD_transp_1 PF00528.22 ABA79984.1 - 2.5e-30 105.6 10.2 3.2e-30 105.3 7.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA79984.1 - 3.2e-13 49.4 0.4 3.2e-13 49.4 0.4 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF1634 PF07843.11 ABA79984.1 - 0.0039 17.2 0.5 0.15 12.1 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1634) DUF2627 PF11118.8 ABA79984.1 - 2.3 8.9 10.7 31 5.2 0.2 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2627) BPD_transp_1 PF00528.22 ABA79985.1 - 1.1e-41 142.6 12.8 1.1e-41 142.6 12.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 ABA79986.2 - 2.8e-79 266.8 3.5 3.5e-79 266.5 3.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2922 PF11148.8 ABA79986.2 - 0.14 11.9 3.2 3.7 7.3 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2922) Nitroreductase PF00881.24 ABA79987.2 - 2.6e-16 60.1 0.1 3.2e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family EI24 PF07264.11 ABA79988.1 - 1.2e-24 87.5 17.7 1.4e-24 87.3 17.7 1.0 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) 2TM PF13239.6 ABA79988.1 - 1.4 9.2 10.2 0.82 10.0 1.4 2.4 2 0 0 2 2 2 0 2TM domain Pox_I5 PF04713.12 ABA79988.1 - 3.3 7.8 7.0 5.5 7.1 0.3 2.8 3 0 0 3 3 3 0 Poxvirus protein I5 DUF1467 PF07330.12 ABA79989.1 - 1.7e-28 98.3 1.3 1.9e-28 98.2 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1467) UPF0370 PF13980.6 ABA79989.1 - 0.36 10.9 1.3 0.51 10.4 0.3 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0370) Glyoxalase_4 PF13669.6 ABA79990.1 - 4.3e-23 81.7 0.0 5.1e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 ABA79990.1 - 1.3e-12 48.0 0.0 1.4e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 ABA79990.1 - 8.4e-09 35.8 0.1 1e-08 35.5 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 ABA79990.1 - 4.2e-06 27.5 0.0 8.6e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain DUF1338 PF07063.13 ABA79990.1 - 0.23 10.6 0.1 1.7 7.8 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1338) Response_reg PF00072.24 ABA79991.1 - 4.4e-14 52.6 0.0 2.1e-13 50.4 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain Acetyltransf_3 PF13302.7 ABA79992.1 - 5.8e-15 56.2 0.0 8.1e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA79992.1 - 1.6e-05 25.1 0.0 2.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family tRNA-synt_2 PF00152.20 ABA79993.1 - 1.3e-91 307.0 0.0 1.6e-91 306.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 ABA79993.1 - 2.5e-15 56.2 0.0 5.3e-15 55.2 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain GAD PF02938.14 ABA79993.1 - 1.3e-06 28.5 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 GAD domain Aminotran_4 PF01063.19 ABA79994.2 - 6.2e-23 81.8 0.0 1.1e-22 81.0 0.0 1.4 1 1 0 1 1 1 1 Amino-transferase class IV HAMP PF00672.25 ABA79994.2 - 0.03 14.7 1.2 0.26 11.7 0.1 2.4 2 0 0 2 2 2 0 HAMP domain Chorismate_bind PF00425.18 ABA79995.2 - 3.3e-83 279.2 0.0 3.9e-83 279.0 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme CPSase_L_D2 PF02786.17 ABA79996.2 - 1.6e-99 331.7 0.1 5.3e-63 212.3 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 ABA79996.2 - 2.9e-40 137.4 0.0 7e-40 136.2 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 ABA79996.2 - 6.7e-18 64.7 0.3 2.5e-17 62.8 0.1 2.2 2 0 0 2 2 2 1 MGS-like domain ATP-grasp_3 PF02655.14 ABA79996.2 - 1.1e-09 38.5 0.0 8.3e-08 32.4 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 ABA79996.2 - 1.8e-09 37.4 0.0 1.5e-05 24.8 0.0 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 ABA79996.2 - 4.3e-08 32.9 0.0 2.8e-07 30.3 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.6 ABA79996.2 - 5.1e-06 26.2 0.0 0.019 14.5 0.0 3.2 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 ABA79996.2 - 8.8e-06 25.4 0.0 0.00011 21.9 0.0 2.1 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus RepB PF07506.11 ABA79996.2 - 0.014 15.5 0.7 2.2 8.3 0.1 2.9 2 1 1 3 3 3 0 RepB plasmid partitioning protein RimK PF08443.11 ABA79996.2 - 0.076 12.6 0.0 0.46 10.1 0.0 2.3 3 0 0 3 3 3 0 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 ABA79996.2 - 0.078 12.4 0.0 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain CoA_binding_2 PF13380.6 ABA79996.2 - 0.11 13.0 0.0 1.4 9.4 0.0 2.8 2 0 0 2 2 2 0 CoA binding domain CbiA PF01656.23 ABA79996.2 - 0.12 12.4 0.0 2 8.5 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 ABA79997.1 - 6.5e-47 159.6 0.0 1.2e-46 158.7 0.0 1.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 ABA79997.1 - 4.5e-32 110.7 0.0 4.9e-31 107.4 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 ABA79997.1 - 1.9e-06 28.0 0.0 3.1e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4229 PF14012.6 ABA79998.1 - 0.013 15.6 7.0 0.016 15.3 7.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) MrpF_PhaF PF04066.13 ABA79998.1 - 0.053 13.9 6.1 0.085 13.3 6.1 1.5 1 1 0 1 1 1 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF1449 PF07290.11 ABA79998.1 - 0.066 12.8 5.2 0.073 12.7 5.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) E1-E2_ATPase PF00122.20 ABA79998.1 - 1.6 8.2 6.5 1.6 8.2 6.5 1.0 1 0 0 1 1 1 0 E1-E2 ATPase Ni_hydr_CYTB PF01292.20 ABA79999.1 - 3.7e-18 65.8 11.4 4.5e-18 65.5 11.4 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4260 PF14079.6 ABA79999.1 - 0.4 10.6 6.0 0.08 12.9 1.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) DUF202 PF02656.15 ABA79999.1 - 0.69 10.4 6.1 0.6 10.6 1.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF4282 PF14110.6 ABA79999.1 - 2.1 9.2 13.3 1.5 9.6 5.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) Abhydrolase_1 PF00561.20 ABA80000.1 - 5e-21 75.5 0.0 1.5e-16 60.9 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 ABA80000.1 - 4e-20 73.4 9.9 4.6e-20 73.2 9.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 ABA80000.1 - 5.4e-11 42.2 0.1 1e-09 38.0 0.0 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 ABA80000.1 - 9.4e-07 29.2 0.0 9.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain PGAP1 PF07819.13 ABA80000.1 - 0.00014 21.7 0.0 0.036 13.8 0.1 2.1 1 1 1 2 2 2 2 PGAP1-like protein Esterase PF00756.20 ABA80000.1 - 0.00029 20.6 0.0 0.00039 20.1 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Chlorophyllase PF07224.11 ABA80000.1 - 0.0033 16.5 0.0 0.0047 16.0 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase Chlorophyllase2 PF12740.7 ABA80000.1 - 0.005 15.8 0.0 0.0066 15.4 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Ser_hydrolase PF06821.13 ABA80000.1 - 0.041 13.8 0.2 0.083 12.7 0.1 1.6 2 1 0 2 2 2 0 Serine hydrolase Abhydro_lipase PF04083.16 ABA80000.1 - 0.097 12.3 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region DLH PF01738.18 ABA80000.1 - 0.13 11.8 0.0 32 4.0 0.0 2.8 2 1 0 3 3 3 0 Dienelactone hydrolase family SHMT PF00464.19 ABA80002.1 - 3.3e-178 592.3 0.0 3.9e-178 592.1 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 ABA80002.1 - 2.3e-08 33.6 0.0 3.7e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 ABA80002.1 - 1.5e-06 27.7 0.2 2.4e-06 27.0 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 ABA80002.1 - 0.00012 21.5 0.1 0.00021 20.8 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 ABA80002.1 - 0.083 11.8 0.1 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Aminotransferase class-V NAD_kinase PF01513.21 ABA80003.1 - 7.6e-19 68.0 0.2 2.5e-18 66.3 0.2 1.7 1 1 0 1 1 1 1 ATP-NAD kinase Pept_tRNA_hydro PF01195.19 ABA80004.1 - 3.9e-53 179.9 0.0 4.7e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase ABM PF03992.16 ABA80005.1 - 1.3e-21 76.5 0.4 1.5e-21 76.3 0.4 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Ribosomal_L25p PF01386.19 ABA80006.1 - 3.1e-24 85.3 0.0 6.1e-24 84.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal L25p family Ribosomal_TL5_C PF14693.6 ABA80006.1 - 7.3e-23 80.7 0.2 1.4e-22 79.8 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein TL5, C-terminal domain MFS_1 PF07690.16 ABA80007.1 - 1.1e-16 60.7 69.2 2.1e-13 50.0 33.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily FMN_dh PF01070.18 ABA80008.1 - 1.6e-128 428.6 0.1 1.9e-128 428.4 0.1 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 ABA80008.1 - 1.2e-05 24.7 0.2 1.8e-05 24.1 0.2 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.15 ABA80008.1 - 2.5e-05 23.8 1.3 0.00016 21.2 1.3 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 ABA80008.1 - 0.00018 20.6 1.3 0.0005 19.2 1.3 1.9 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 ABA80008.1 - 0.0032 17.0 0.2 0.059 12.8 0.1 2.3 1 1 1 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 ABA80008.1 - 0.038 13.2 0.2 0.061 12.5 0.2 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase HPP PF04982.13 ABA80009.1 - 3.7e-32 111.1 18.6 3.7e-32 111.1 18.6 2.2 3 0 0 3 3 3 1 HPP family CBS PF00571.28 ABA80009.1 - 1.1e-24 86.6 1.0 8.5e-12 45.3 0.3 2.4 2 0 0 2 2 2 2 CBS domain Trp_syntA PF00290.20 ABA80010.1 - 3.8e-95 317.6 0.4 4.1e-95 317.5 0.4 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain BtpA PF03437.15 ABA80010.1 - 0.0002 20.9 0.2 0.0002 20.9 0.2 1.5 2 0 0 2 2 2 1 BtpA family His_biosynth PF00977.21 ABA80010.1 - 0.00058 19.4 0.4 0.0018 17.8 0.2 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 ABA80010.1 - 0.0041 16.6 0.4 0.0065 15.9 0.4 1.3 1 0 0 1 1 1 1 PcrB family YchF-GTPase_C PF06071.13 ABA80012.1 - 4.4e-37 126.1 2.2 7.5e-37 125.4 0.0 2.5 4 0 0 4 4 4 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 ABA80012.1 - 9.6e-24 83.7 0.0 2.4e-23 82.4 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 ABA80012.1 - 7.3e-09 35.3 0.1 7.7e-08 32.0 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B Arf PF00025.21 ABA80012.1 - 0.038 13.5 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family MeaB PF03308.16 ABA80012.1 - 0.043 12.8 0.1 0.1 11.6 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CK2S PF15011.6 ABA80012.1 - 0.12 12.2 0.5 0.5 10.3 0.0 1.9 1 1 1 2 2 2 0 Casein Kinase 2 substrate Dynamin_N PF00350.23 ABA80012.1 - 0.17 11.9 0.0 20 5.2 0.0 2.9 3 0 0 3 3 3 0 Dynamin family ABC_tran PF00005.27 ABA80012.1 - 0.18 12.3 0.0 0.38 11.3 0.0 1.6 1 0 0 1 1 1 0 ABC transporter MannoseP_isomer PF01050.18 ABA80013.1 - 3e-63 212.2 0.2 4.6e-63 211.6 0.2 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 ABA80013.1 - 2.7e-53 181.1 0.0 8.2e-53 179.5 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 ABA80013.1 - 6.4e-13 48.2 0.2 1.3e-12 47.2 0.2 1.6 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 ABA80013.1 - 6.1e-09 36.4 4.6 6.1e-09 36.4 4.6 2.1 1 1 0 1 1 1 1 MobA-like NTP transferase domain OB_MalK PF17912.1 ABA80013.1 - 0.069 14.0 0.1 0.94 10.4 0.0 2.7 2 0 0 2 2 2 0 MalK OB fold domain AraC_binding PF02311.19 ABA80013.1 - 0.11 12.4 0.1 0.27 11.1 0.1 1.6 1 0 0 1 1 1 0 AraC-like ligand binding domain PGM_PMM_I PF02878.16 ABA80014.1 - 1.5e-31 108.9 0.0 2.8e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 ABA80014.1 - 1.3e-21 76.9 0.0 2.1e-21 76.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 ABA80014.1 - 3.5e-20 72.5 0.0 8.7e-20 71.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 ABA80014.1 - 4.2e-10 39.6 0.3 1.5e-09 37.8 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DHDPS PF00701.22 ABA80014.1 - 0.09 11.5 0.1 0.14 10.8 0.1 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family DUF4226 PF10774.9 ABA80015.1 - 5.5 7.3 7.9 1.9 8.8 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) HI0933_like PF03486.14 ABA80016.1 - 5.7e-89 298.7 0.0 8.7e-89 298.0 0.0 1.3 1 1 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 ABA80016.1 - 1e-08 34.7 2.3 5.9e-07 28.9 2.3 2.5 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 ABA80016.1 - 1.1e-06 28.2 0.3 1.6e-06 27.6 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 ABA80016.1 - 4e-06 26.4 0.3 6.1e-06 25.8 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA80016.1 - 5.6e-06 25.8 0.0 4.3e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 ABA80016.1 - 4.9e-05 23.1 3.7 0.0049 16.5 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA80016.1 - 0.00011 22.4 0.3 0.00011 22.4 0.3 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 ABA80016.1 - 0.00017 20.9 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 ABA80016.1 - 0.00032 19.9 3.4 0.00088 18.5 0.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 ABA80016.1 - 0.00042 20.8 0.1 0.0017 18.9 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA80016.1 - 0.00069 19.0 0.2 0.00095 18.5 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 ABA80016.1 - 0.00099 18.3 0.2 0.002 17.2 0.2 1.5 1 0 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 ABA80016.1 - 0.025 13.9 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 ABA80016.1 - 0.065 12.5 0.4 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 ABA80016.1 - 0.083 11.7 0.1 0.19 10.6 0.1 1.5 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 ABA80016.1 - 0.15 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding OMP_b-brl PF13505.6 ABA80017.1 - 0.00049 20.3 12.7 0.016 15.3 12.3 2.4 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain DNA_pol3_gamma3 PF12169.8 ABA80018.1 - 0.0003 20.7 0.7 0.0003 20.7 0.7 2.1 2 0 0 2 2 2 1 DNA polymerase III subunits gamma and tau domain III IMPDH PF00478.25 ABA80018.1 - 0.11 11.4 0.0 12 4.8 0.0 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain LptE PF04390.12 ABA80019.1 - 1.9e-08 35.0 0.6 2.3e-08 34.7 0.6 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly CelD_N PF02927.14 ABA80019.1 - 0.025 15.5 0.1 0.041 14.8 0.1 1.3 1 0 0 1 1 1 0 Cellulase N-terminal ig-like domain LPAM_2 PF13627.6 ABA80019.1 - 0.082 12.8 1.4 0.18 11.7 1.4 1.6 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site tRNA-synt_1 PF00133.22 ABA80020.1 - 3e-62 210.7 0.1 1.2e-23 83.2 0.2 6.0 3 1 2 5 5 5 5 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 ABA80020.1 - 2.9e-58 196.4 0.0 4.7e-58 195.8 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 ABA80020.1 - 3.2e-25 88.7 0.2 2.8e-13 49.4 0.0 4.4 4 1 1 5 5 5 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 ABA80020.1 - 7e-16 58.5 0.0 1.8e-15 57.2 0.0 1.7 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 ABA80020.1 - 0.00067 19.1 0.0 0.67 9.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 ABA80020.1 - 0.0032 16.4 0.0 0.62 8.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DM PF00751.18 ABA80020.1 - 0.92 9.5 3.7 0.3 11.0 0.4 1.8 2 0 0 2 2 2 0 DM DNA binding domain DUF3576 PF12100.8 ABA80021.2 - 4.1e-25 87.8 0.0 6.2e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3576) Porin_4 PF13609.6 ABA80022.1 - 1.6e-47 162.8 42.8 2.1e-47 162.4 42.8 1.1 1 0 0 1 1 1 1 Gram-negative porin Ala_racemase_N PF01168.20 ABA80025.1 - 1.3e-20 74.0 0.2 1.4e-20 73.9 0.2 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain YkuD PF03734.14 ABA80026.1 - 7.6e-13 49.1 0.0 8.9e-13 48.9 0.0 1.0 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain GTP_cyclohydro2 PF00925.20 ABA80027.1 - 7.3e-60 201.3 0.0 1e-59 200.8 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II Response_reg PF00072.24 ABA80028.1 - 8.6e-28 96.8 0.0 2e-27 95.6 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA80028.1 - 1.3e-20 73.2 1.0 3.8e-20 71.7 0.4 1.9 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 ABA80028.1 - 0.11 12.9 0.0 0.32 11.4 0.0 1.9 2 1 0 2 2 2 0 Flagellar regulatory protein FleQ Exo_endo_phos PF03372.23 ABA80029.1 - 3.1e-24 85.8 0.4 3.6e-24 85.6 0.4 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 ABA80029.1 - 0.069 13.0 0.0 0.62 9.9 0.0 2.2 1 1 0 1 1 1 0 Endonuclease-reverse transcriptase TetR_C_7 PF14246.6 ABA80030.1 - 1.5e-39 134.7 2.3 2.2e-39 134.2 0.6 1.9 2 0 0 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 ABA80030.1 - 1.9e-15 56.3 0.1 4.8e-15 55.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 ABA80030.1 - 0.00018 21.8 1.2 0.00028 21.2 1.2 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 ABA80030.1 - 0.00024 20.8 0.7 0.0098 15.7 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_7 PF02796.15 ABA80030.1 - 0.00082 19.4 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 ABA80030.1 - 0.0039 16.9 0.0 0.019 14.8 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 ABA80030.1 - 0.011 15.4 0.0 0.03 14.0 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 ABA80030.1 - 0.024 14.8 0.0 0.07 13.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_22 PF13309.6 ABA80030.1 - 0.049 13.7 0.3 0.13 12.4 0.1 1.8 2 0 0 2 2 2 0 HTH domain HTH_40 PF14493.6 ABA80030.1 - 0.05 14.1 0.0 8.1 7.0 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_31 PF13560.6 ABA80030.1 - 0.097 13.0 0.9 1.2 9.5 0.0 2.7 2 2 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 ABA80030.1 - 0.11 12.8 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Transposase DUF3693 PF12472.8 ABA80031.1 - 0.082 12.6 0.1 0.089 12.5 0.1 1.1 1 0 0 1 1 1 0 Phage related protein Rubrerythrin PF02915.17 ABA80032.1 - 1.2e-31 109.9 1.7 1.8e-31 109.4 1.7 1.2 1 0 0 1 1 1 1 Rubrerythrin VIT1 PF01988.19 ABA80032.1 - 1.1e-05 25.4 6.2 1.1e-05 25.4 6.2 2.8 2 1 1 3 3 3 2 VIT family Ferritin_2 PF13668.6 ABA80032.1 - 0.0046 17.2 2.8 0.021 15.0 1.3 2.5 1 1 1 2 2 2 2 Ferritin-like domain Ferritin PF00210.24 ABA80032.1 - 0.02 14.8 0.3 0.038 13.9 0.3 1.5 1 1 0 1 1 1 0 Ferritin-like domain DUF2383 PF09537.10 ABA80032.1 - 0.03 14.7 2.0 0.17 12.3 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) COQ7 PF03232.13 ABA80032.1 - 0.42 10.4 4.9 6.2 6.6 0.0 2.5 3 0 0 3 3 3 0 Ubiquinone biosynthesis protein COQ7 Mem_trans PF03547.18 ABA80033.1 - 1.2e-26 93.1 27.7 4.9e-17 61.4 11.5 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF3007 PF11460.8 ABA80033.1 - 1.3 9.3 3.5 1.2 9.4 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Esterase PF00756.20 ABA80034.1 - 3.7e-53 180.7 0.0 4.3e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 Putative esterase Esterase_phd PF10503.9 ABA80034.1 - 2e-06 27.5 0.0 0.011 15.3 0.0 2.1 2 0 0 2 2 2 2 Esterase PHB depolymerase Peptidase_S9 PF00326.21 ABA80034.1 - 8.8e-06 25.3 0.0 1.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 ABA80034.1 - 0.00059 19.2 0.2 0.0094 15.2 0.1 2.0 1 1 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 ABA80034.1 - 0.00088 19.0 0.1 0.003 17.3 0.1 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 ABA80034.1 - 0.004 16.7 0.0 0.016 14.7 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 ABA80034.1 - 0.0086 14.8 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Chlorophyllase PF07224.11 ABA80034.1 - 0.037 13.1 0.0 0.053 12.5 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase DUF188 PF02639.14 ABA80035.1 - 5.1e-42 142.6 0.0 6.1e-42 142.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 DUF4440 PF14534.6 ABA80035.1 - 0.11 12.9 0.0 0.41 11.1 0.0 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4440) OCD_Mu_crystall PF02423.15 ABA80036.1 - 2.2e-49 168.1 0.1 2.7e-49 167.9 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 ABA80036.1 - 1.1e-10 41.7 0.0 1.7e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 ABA80036.1 - 0.001 19.3 0.0 0.0019 18.4 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 ABA80036.1 - 0.0029 18.2 0.0 0.0057 17.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 ABA80036.1 - 0.0058 16.0 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.15 ABA80036.1 - 0.036 14.2 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 ABA80036.1 - 0.05 14.4 0.0 0.079 13.8 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold OTCace PF00185.24 ABA80036.1 - 0.16 12.1 0.1 0.48 10.5 0.1 1.8 1 1 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Caa3_CtaG PF09678.10 ABA80037.1 - 6.5e-24 84.7 28.5 2.2e-23 82.9 28.5 1.7 1 1 0 1 1 1 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF1404 PF07185.11 ABA80037.1 - 0.016 14.9 2.6 0.022 14.5 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1404) DUF3419 PF11899.8 ABA80038.1 - 8.9e-107 357.6 0.0 1e-106 357.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3419) Methyltransf_23 PF13489.6 ABA80039.1 - 1.1e-16 61.2 0.0 1.3e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA80039.1 - 2.4e-15 57.0 0.0 3.8e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA80039.1 - 9.3e-14 52.0 0.0 1.5e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA80039.1 - 1.1e-12 48.5 0.0 1.5e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 ABA80039.1 - 4.8e-10 39.2 0.0 7e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 ABA80039.1 - 1.5e-09 37.8 0.0 2.2e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 ABA80039.1 - 0.00098 18.8 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 ABA80039.1 - 0.0058 16.2 0.0 0.032 13.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 ABA80039.1 - 0.19 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase EamA PF00892.20 ABA80040.1 - 3e-27 95.5 30.1 3.5e-14 53.2 9.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family Multi_Drug_Res PF00893.19 ABA80040.1 - 0.3 11.8 15.6 1.6 9.4 0.4 3.1 3 0 0 3 3 3 0 Small Multidrug Resistance protein Iso_dh PF00180.20 ABA80041.2 - 6.6e-130 433.3 0.0 7.4e-130 433.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Exo_endo_phos PF03372.23 ABA80042.1 - 1.5e-13 50.8 4.0 2.2e-13 50.3 4.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Aconitase_C PF00694.19 ABA80044.1 - 4.9e-39 133.6 0.0 7.2e-39 133.1 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 ABA80044.1 - 0.073 12.7 0.1 2.6 7.7 0.1 2.2 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus DUF308 PF03729.13 ABA80045.1 - 1.2e-19 70.4 39.2 1.6e-11 44.4 12.9 3.0 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF872 PF05915.12 ABA80045.1 - 4.9 7.3 12.0 0.35 11.0 0.7 2.9 3 1 0 3 3 3 0 Eukaryotic protein of unknown function (DUF872) Aconitase PF00330.20 ABA80046.1 - 4.9e-161 536.8 0.1 5.6e-161 536.6 0.1 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 ABA80046.1 - 0.011 14.5 0.0 0.017 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) SOUL PF04832.12 ABA80047.2 - 9.1e-42 143.1 0.0 1e-41 142.9 0.0 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein RsfS PF02410.15 ABA80048.1 - 6.1e-30 103.6 0.1 6.7e-30 103.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal silencing factor during starvation SPOUT_MTase PF02590.17 ABA80049.1 - 1.3e-42 145.4 0.0 1.5e-42 145.2 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase RNase_H PF00075.24 ABA80050.2 - 4.4e-50 169.6 0.0 4.8e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 RNase H RNA_pol_Rpo13 PF12136.8 ABA80050.2 - 0.013 15.4 1.5 3.6 7.6 0.0 2.6 2 1 0 2 2 2 0 RNA polymerase Rpo13 subunit HTH domain RVT_3 PF13456.6 ABA80050.2 - 0.033 14.0 0.6 0.08 12.8 0.6 1.8 1 1 0 1 1 1 0 Reverse transcriptase-like TetR_N PF00440.23 ABA80051.1 - 0.006 16.4 0.1 0.013 15.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Response_reg PF00072.24 ABA80052.1 - 1.6e-05 25.1 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF3959 PF13105.6 ABA80053.1 - 0.17 11.3 0.0 0.21 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) Aminotran_1_2 PF00155.21 ABA80054.1 - 5.7e-38 131.0 0.0 6.7e-38 130.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 ABA80054.1 - 0.0037 16.6 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pep_deformylase PF01327.21 ABA80055.1 - 2.4e-49 167.0 0.0 2.8e-49 166.8 0.0 1.1 1 0 0 1 1 1 1 Polypeptide deformylase Pep_deformylase PF01327.21 ABA80056.1 - 3e-41 140.7 0.0 3.4e-41 140.5 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase Pep_deformylase PF01327.21 ABA80057.1 - 1.2e-37 129.0 0.0 1.4e-37 128.8 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase Formyl_trans_N PF00551.19 ABA80058.1 - 1.6e-42 145.3 0.0 2e-42 145.0 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 ABA80058.1 - 2e-26 92.1 0.0 3.3e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain SMC_N PF02463.19 ABA80059.1 - 2.6e-56 190.5 0.0 3.4e-56 190.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80059.1 - 4.5e-15 56.7 0.0 4.5e-15 56.7 0.0 4.7 3 1 0 3 3 3 1 AAA domain AAA_21 PF13304.6 ABA80059.1 - 2.7e-13 50.4 0.2 4.1e-06 26.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 ABA80059.1 - 9.6e-07 28.8 0.0 1.9e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 ABA80059.1 - 0.0011 19.5 8.3 0.021 15.3 0.0 4.0 5 0 0 5 5 5 2 ABC transporter AAA_29 PF13555.6 ABA80059.1 - 0.012 15.4 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 ABA80059.1 - 0.89 10.0 4.3 10 6.5 0.0 3.8 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA80059.1 - 1.7 9.0 9.5 18 5.6 0.0 5.0 6 0 0 6 6 6 0 AAA domain HALZ PF02183.18 ABA80059.1 - 5.1 7.4 10.3 3 8.1 0.5 4.3 4 1 0 5 5 5 0 Homeobox associated leucine zipper Nsp1_C PF05064.13 ABA80059.1 - 8.2 6.3 12.6 1.7 8.4 0.7 3.7 3 0 0 3 3 3 0 Nsp1-like C-terminal region Acetyltransf_1 PF00583.25 ABA80060.1 - 3.1e-09 37.1 0.0 3.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 ABA80060.1 - 6.1e-07 29.8 0.0 8.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 ABA80060.1 - 3.8e-06 26.9 0.0 5e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA80060.1 - 0.011 15.9 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 ABA80060.1 - 0.014 15.5 1.6 0.017 15.3 0.5 1.7 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain EamA PF00892.20 ABA80061.1 - 4.9e-18 65.6 32.0 2.1e-10 40.9 10.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF5463 PF17551.2 ABA80061.1 - 1.2 9.1 6.2 8.4 6.4 0.1 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5463) Methyltransf_30 PF05430.11 ABA80062.1 - 2.7e-39 133.9 0.0 4.2e-39 133.3 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.6 ABA80062.1 - 0.014 16.1 0.0 0.069 13.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain DAO PF01266.24 ABA80063.1 - 1e-30 107.5 12.8 3.4e-30 105.8 12.8 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA80063.1 - 0.00021 21.5 0.3 0.00054 20.1 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 ABA80063.1 - 0.0013 18.2 1.1 0.0017 17.8 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DFP PF04127.15 ABA80063.1 - 0.16 11.8 0.8 0.29 10.9 0.8 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein GIDA PF01134.22 ABA80063.1 - 0.48 9.5 1.3 0.7 8.9 1.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 ABA80063.1 - 6.8 5.9 6.4 1.2 8.4 0.2 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain SLT PF01464.20 ABA80064.1 - 1e-23 83.2 0.0 2.1e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 Transglycosylase SLT domain TPR_16 PF13432.6 ABA80064.1 - 1.1e-05 26.0 8.3 1.1e-05 26.0 8.3 6.9 8 3 1 9 9 9 1 Tetratricopeptide repeat TPR_2 PF07719.17 ABA80064.1 - 3e-05 23.8 12.4 0.014 15.4 2.6 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 ABA80064.1 - 0.00045 19.9 3.8 0.23 11.4 0.3 3.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 ABA80064.1 - 0.0018 18.3 0.2 0.064 13.5 0.3 3.2 2 0 0 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 ABA80064.1 - 0.0025 18.0 0.0 0.76 10.1 0.0 3.3 3 1 1 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 ABA80064.1 - 0.013 16.1 3.2 0.013 16.1 3.2 8.8 10 0 0 10 10 6 0 Tetratricopeptide repeat TPR_12 PF13424.6 ABA80064.1 - 0.03 14.6 17.2 0.71 10.2 2.0 5.3 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_7 PF13176.6 ABA80064.1 - 1.1 9.5 8.0 51 4.2 0.1 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_19 PF14559.6 ABA80064.1 - 4.2 8.0 23.2 0.29 11.7 3.2 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.6 ABA80064.1 - 5.3 7.0 10.2 16 5.6 0.2 5.0 6 0 0 6 6 6 0 Tetratricopeptide repeat DHDPS PF00701.22 ABA80065.2 - 6.1e-90 300.8 0.0 6.8e-90 300.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family SmpB PF01668.18 ABA80066.1 - 5.9e-56 188.3 0.4 6.7e-56 188.2 0.4 1.0 1 0 0 1 1 1 1 SmpB protein Rhodanese PF00581.20 ABA80067.1 - 1.4e-30 106.0 0.0 6.1e-17 62.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Aminotran_1_2 PF00155.21 ABA80068.1 - 1.2e-62 212.2 0.0 1.4e-62 212.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Glycos_transf_N PF04413.16 ABA80068.1 - 0.042 13.5 0.1 0.084 12.5 0.1 1.4 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Ammonium_transp PF00909.21 ABA80069.1 - 4.5e-116 387.8 50.0 5.4e-116 387.6 50.0 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 ABA80070.1 - 1.1e-39 135.2 2.6 1.2e-39 135.0 2.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 ABA80070.1 - 0.071 13.3 0.5 0.68 10.2 0.5 2.0 1 1 0 1 1 1 0 Cyclic-di-AMP receptor Transgly PF00912.22 ABA80071.2 - 6.2e-55 185.4 0.0 1.2e-54 184.5 0.0 1.4 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 ABA80071.2 - 2.9e-33 115.4 0.3 1.1e-32 113.5 0.3 1.8 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain DUF2456 PF10445.9 ABA80071.2 - 0.036 14.2 1.0 0.066 13.3 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2456) MlaC PF05494.12 ABA80072.1 - 5e-30 104.5 0.0 6e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 MlaC protein MlaA PF04333.13 ABA80073.1 - 1.8e-61 207.3 0.0 2.4e-61 206.9 0.0 1.1 1 0 0 1 1 1 1 MlaA lipoprotein ABC_tran PF00005.27 ABA80074.1 - 5e-29 101.6 0.0 1.1e-28 100.5 0.0 1.6 2 0 0 2 2 1 1 ABC transporter ABC_membrane PF00664.23 ABA80074.1 - 1.5e-15 57.6 2.4 6.2e-15 55.6 2.4 1.8 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 ABA80074.1 - 0.00019 20.9 0.5 0.14 11.6 0.0 2.5 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80074.1 - 0.00029 20.5 0.0 0.0006 19.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA80074.1 - 0.012 15.9 0.9 0.031 14.6 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 ABA80074.1 - 0.018 15.3 0.0 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 ABA80074.1 - 0.025 14.4 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA80074.1 - 0.029 14.1 0.1 0.029 14.1 0.1 2.7 3 1 0 3 3 3 0 AAA domain AAA_33 PF13671.6 ABA80074.1 - 0.033 14.3 0.1 0.08 13.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 ABA80074.1 - 0.054 12.5 0.1 0.1 11.6 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 ABA80074.1 - 0.069 13.7 0.0 0.15 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA80074.1 - 0.11 12.6 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 ABA80074.1 - 0.13 12.2 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 ABA80074.1 - 0.13 12.0 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 ABA80074.1 - 0.19 11.6 0.2 0.35 10.8 0.2 1.4 1 0 0 1 1 1 0 NACHT domain HlyD_3 PF13437.6 ABA80075.1 - 2.5e-17 63.5 2.0 1e-13 51.9 0.1 2.7 2 0 0 2 2 2 2 HlyD family secretion protein HlyD PF00529.20 ABA80075.1 - 1e-10 41.4 1.0 1.7e-10 40.7 1.0 1.7 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS HlyD_D23 PF16576.5 ABA80075.1 - 5.2e-09 35.6 3.1 4.4e-05 22.8 0.1 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 ABA80075.1 - 4.2e-07 29.7 8.4 8.2e-07 28.8 0.4 3.4 2 1 1 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 ABA80075.1 - 0.0012 18.6 0.7 0.0039 17.0 0.4 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme SKA1 PF07160.12 ABA80075.1 - 0.087 12.7 0.6 0.13 12.1 0.6 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 Tropomyosin_1 PF12718.7 ABA80075.1 - 0.13 12.4 6.4 0.23 11.6 6.4 1.5 1 0 0 1 1 1 0 Tropomyosin like DUF4763 PF15960.5 ABA80075.1 - 0.16 11.2 3.3 0.79 9.0 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) TTKRSYEDQ PF10212.9 ABA80075.1 - 0.16 10.9 1.0 0.26 10.3 1.0 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Prefoldin_2 PF01920.20 ABA80075.1 - 0.22 11.5 3.2 0.24 11.4 0.5 2.5 3 1 0 3 3 2 0 Prefoldin subunit DUF1664 PF07889.12 ABA80075.1 - 0.55 10.3 2.7 0.47 10.5 0.5 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) FAM184 PF15665.5 ABA80075.1 - 0.73 9.6 4.1 1.4 8.6 4.1 1.4 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B JIP_LZII PF16471.5 ABA80075.1 - 1.3 9.3 7.0 4.1 7.7 0.6 2.9 3 0 0 3 3 3 0 JNK-interacting protein leucine zipper II APG6_N PF17675.1 ABA80075.1 - 3.6 8.1 15.7 16 6.0 4.6 2.7 1 1 2 3 3 3 0 Apg6 coiled-coil region FlxA PF14282.6 ABA80075.1 - 3.8 7.6 7.8 18 5.4 5.4 2.5 1 1 1 2 2 2 0 FlxA-like protein YjgF_endoribonc PF14588.6 ABA80076.1 - 3.4e-31 108.4 0.1 3.7e-31 108.3 0.1 1.0 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Ribonuc_L-PSP PF01042.21 ABA80076.1 - 4.8e-21 75.0 0.0 5.8e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF3248 PF11609.8 ABA80076.1 - 0.077 12.9 0.1 5.1 7.1 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3248) GDPD PF03009.17 ABA80077.1 - 6.2e-22 78.6 0.0 9.1e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family FemAB_like PF04339.12 ABA80078.2 - 8.8e-155 515.4 0.0 1e-154 515.2 0.0 1.0 1 0 0 1 1 1 1 Peptidogalycan biosysnthesis/recognition Acetyltransf_6 PF13480.7 ABA80078.2 - 1.9e-13 50.8 5.4 7e-13 48.9 3.6 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF1570 PF07607.11 ABA80078.2 - 0.12 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1570) GST_N PF02798.20 ABA80079.2 - 1.4e-13 51.0 0.0 2.2e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 ABA80079.2 - 4.8e-13 49.3 0.0 7.4e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 ABA80079.2 - 3.7e-09 36.8 0.0 5.9e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 ABA80079.2 - 2.4e-05 24.2 0.3 4.4e-05 23.4 0.3 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 ABA80079.2 - 0.00035 20.7 0.0 0.0006 20.0 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Pterin_4a PF01329.19 ABA80080.1 - 1.7e-29 101.8 0.0 1.9e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Redoxin PF08534.10 ABA80081.1 - 4.1e-32 110.9 0.0 4.5e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 ABA80081.1 - 1.7e-14 53.8 0.0 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Pyr_redox_2 PF07992.14 ABA80082.1 - 1.5e-57 195.1 0.2 1.8e-57 194.8 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.6 ABA80082.1 - 2.5e-30 104.9 0.1 8.3e-30 103.2 0.0 2.0 2 0 0 2 2 1 1 Reductase C-terminal Pyr_redox PF00070.27 ABA80082.1 - 1.5e-17 63.9 3.1 4.7e-15 55.9 0.2 3.2 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA80082.1 - 5e-05 23.4 4.8 0.011 16.0 0.4 3.5 4 0 0 4 4 4 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 ABA80082.1 - 0.00016 20.9 1.9 0.19 10.7 0.5 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 ABA80082.1 - 0.00038 19.8 1.4 0.00038 19.8 1.4 3.0 3 1 0 4 4 4 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 ABA80082.1 - 0.00038 20.9 0.1 0.051 14.1 0.1 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain DAO PF01266.24 ABA80082.1 - 0.0015 18.2 14.9 0.9 9.1 8.2 3.7 3 1 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 ABA80082.1 - 0.0021 17.3 0.1 0.026 13.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 ABA80082.1 - 0.0045 16.6 0.5 0.0082 15.7 0.1 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 ABA80082.1 - 0.0089 15.9 2.0 0.012 15.5 0.2 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 ABA80082.1 - 0.042 13.0 0.2 5.6 6.0 0.1 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 ABA80082.1 - 0.066 13.7 0.2 0.68 10.4 0.2 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 ABA80082.1 - 0.067 12.5 0.1 0.83 9.0 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 ABA80082.1 - 0.08 13.2 1.3 12 6.2 0.1 2.5 2 0 0 2 2 2 0 TrkA-N domain HI0933_like PF03486.14 ABA80082.1 - 0.21 10.3 6.7 0.11 11.2 1.4 2.3 3 0 0 3 3 3 0 HI0933-like protein Trp_halogenase PF04820.14 ABA80082.1 - 0.26 10.1 7.5 0.82 8.4 0.0 2.9 2 1 1 3 3 3 0 Tryptophan halogenase GIDA PF01134.22 ABA80082.1 - 0.28 10.2 11.3 0.13 11.3 4.0 2.5 2 1 1 3 3 3 0 Glucose inhibited division protein A Thi4 PF01946.17 ABA80082.1 - 0.56 9.4 2.3 7.5 5.7 0.3 2.4 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 ABA80082.1 - 3.3 7.7 5.1 21 5.1 0.0 3.6 4 1 1 5 5 5 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 ABA80082.1 - 9.4 5.4 9.7 5.2 6.3 4.2 2.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase Cons_hypoth95 PF03602.15 ABA80083.1 - 5e-42 143.6 0.0 5.6e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 ABA80083.1 - 4.3e-05 23.1 0.0 5.5e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MethyltransfD12 PF02086.15 ABA80083.1 - 0.02 14.6 0.0 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.6 ABA80083.1 - 0.069 13.9 0.0 0.11 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 ABA80083.1 - 0.16 11.7 0.0 0.22 11.3 0.0 1.1 1 0 0 1 1 1 0 Lysine methyltransferase HAD_2 PF13419.6 ABA80084.1 - 2.1e-19 70.3 0.0 2.7e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA80084.1 - 7.4e-17 62.3 0.4 1.9e-14 54.4 0.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA80084.1 - 8.9e-07 28.9 0.0 1.9e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 ABA80084.1 - 2.8e-06 27.3 0.0 2.4e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA80084.1 - 6.1e-05 23.5 0.2 7.4e-05 23.2 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Catalase PF00199.19 ABA80085.1 - 2.5e-06 26.9 0.0 6.9e-06 25.4 0.0 1.6 1 1 0 1 1 1 1 Catalase ZnuA PF01297.17 ABA80086.1 - 3.8e-71 239.5 0.0 4.4e-71 239.3 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic CLP_protease PF00574.23 ABA80086.1 - 0.19 11.6 0.3 0.31 10.9 0.3 1.2 1 0 0 1 1 1 0 Clp protease ABC_tran PF00005.27 ABA80087.1 - 3.8e-27 95.5 0.0 5.7e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80087.1 - 1.8e-08 34.6 1.0 0.0062 16.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80087.1 - 0.00046 19.7 0.1 0.02 14.3 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80087.1 - 0.0008 19.1 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 ABA80087.1 - 0.0026 18.0 0.1 0.023 14.9 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 ABA80087.1 - 0.016 15.4 0.3 0.16 12.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA80087.1 - 0.037 14.5 0.0 0.056 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA80087.1 - 0.038 13.7 0.9 0.37 10.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA80087.1 - 0.061 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 ABA80087.1 - 0.086 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA80087.1 - 0.11 12.6 0.1 0.24 11.5 0.1 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC-3 PF00950.17 ABA80088.1 - 8.5e-77 258.1 34.2 9.7e-77 257.9 34.2 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 ABA80088.1 - 1.2e-06 27.8 30.6 1.2e-06 27.8 30.6 1.8 1 1 1 2 2 2 1 FecCD transport family ABC-3 PF00950.17 ABA80089.1 - 1.3e-70 237.9 28.0 1.5e-70 237.7 28.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 ABA80089.1 - 5.8e-06 25.5 29.5 5.8e-06 25.5 29.5 1.5 1 1 0 1 1 1 1 FecCD transport family Response_reg PF00072.24 ABA80090.1 - 9.6e-25 86.9 0.0 1.6e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 ABA80090.1 - 3.3e-19 68.2 0.7 4.7e-19 67.7 0.7 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA80090.1 - 1.3e-05 24.8 1.9 3.1e-05 23.6 1.9 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 ABA80090.1 - 0.0011 18.7 0.2 0.0029 17.4 0.1 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 ABA80090.1 - 0.023 14.7 0.2 0.082 12.9 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn helix PAS PF00989.25 ABA80091.1 - 3.4e-20 72.1 0.0 7.2e-20 71.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 ABA80091.1 - 5.5e-19 68.7 0.0 9.4e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 ABA80091.1 - 3.7e-13 49.7 1.7 8.3e-13 48.6 0.2 2.4 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 ABA80091.1 - 2e-10 40.8 0.0 3.9e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 ABA80091.1 - 2.6e-08 33.8 2.5 4.3e-08 33.1 0.9 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 ABA80091.1 - 7.2e-06 26.2 0.0 1.7e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 ABA80091.1 - 0.00054 19.9 0.2 0.002 18.1 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 ABA80091.1 - 0.02 14.8 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 GHKL domain PAS_12 PF18095.1 ABA80091.1 - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain DUF4307 PF14155.6 ABA80091.1 - 0.16 11.8 0.9 1.1 9.1 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DctP PF03480.13 ABA80092.1 - 1.2e-109 366.0 0.7 1.5e-109 365.8 0.7 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DctQ PF04290.12 ABA80093.1 - 1.2e-21 77.0 10.1 3e-21 75.7 9.2 1.9 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component GP4 PF03010.14 ABA80093.1 - 0.1 12.5 0.0 4.5 7.2 0.0 2.3 2 1 0 2 2 2 0 GP4 DctM PF06808.12 ABA80094.1 - 1.3e-132 442.6 53.2 1.5e-132 442.4 53.2 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 ABA80094.1 - 0.15 11.3 61.6 3 7.0 28.8 2.3 1 1 1 2 2 2 0 Citrate transporter ECH_1 PF00378.20 ABA80095.1 - 1.8e-33 115.9 3.0 2e-33 115.7 3.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 ABA80095.1 - 6.2e-18 65.4 1.7 8.5e-18 64.9 1.7 1.2 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase adh_short PF00106.25 ABA80096.1 - 7.6e-57 191.9 2.6 9.3e-57 191.6 2.6 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA80096.1 - 1.5e-45 155.6 2.2 1.8e-45 155.4 2.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA80096.1 - 1.2e-10 41.6 2.4 1.6e-10 41.2 2.4 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA80096.1 - 0.0059 16.1 0.3 0.0074 15.8 0.3 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 ABA80096.1 - 0.037 13.6 2.5 0.053 13.1 2.5 1.2 1 0 0 1 1 1 0 NmrA-like family DUF2125 PF09898.9 ABA80097.1 - 1.6e-10 41.2 4.5 1.6e-10 41.2 4.5 2.7 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2125) PmbA_TldD PF01523.16 ABA80098.1 - 7.2e-54 183.5 0.1 1e-53 183.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF2190 PF09956.9 ABA80098.1 - 0.38 11.3 2.6 2.8 8.5 1.0 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) Inositol_P PF00459.25 ABA80099.1 - 5e-44 150.8 0.0 6.9e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase_glpX PF03320.13 ABA80099.1 - 0.12 11.2 0.1 0.2 10.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded adh_short_C2 PF13561.6 ABA80101.1 - 1.4e-60 204.8 0.1 1.7e-60 204.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80101.1 - 2.4e-49 167.5 0.0 2.8e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA80101.1 - 4.4e-08 33.3 0.0 5.7e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA80101.1 - 0.00079 18.9 0.1 0.001 18.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family MotA_ExbB PF01618.16 ABA80102.1 - 2.2e-33 114.7 0.9 3.9e-33 113.9 0.9 1.4 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 ABA80103.1 - 9.3e-26 90.5 0.0 1.1e-25 90.3 0.0 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR TonB_2 PF13103.6 ABA80104.1 - 3.1e-11 43.4 0.0 3.1e-11 43.4 0.0 2.8 3 0 0 3 3 3 1 TonB C terminal TonB_C PF03544.14 ABA80104.1 - 3.2e-10 40.3 0.0 8.6e-10 38.9 0.0 1.7 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TolA PF06519.11 ABA80104.1 - 0.00077 19.6 0.0 0.0017 18.5 0.0 1.5 1 0 0 1 1 1 1 TolA C-terminal Peptidase_M24 PF00557.24 ABA80105.2 - 5.4e-49 166.7 0.2 6.2e-49 166.5 0.2 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 MoCF_biosynth PF00994.24 ABA80106.1 - 1.5e-31 109.0 0.1 2e-31 108.6 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF5419 PF17441.2 ABA80106.1 - 0.02 15.0 0.4 0.043 13.9 0.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5419) Acetyltransf_1 PF00583.25 ABA80107.1 - 6.9e-06 26.3 0.0 1.2e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 ABA80107.1 - 1.3e-05 25.0 0.0 3.8e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_10 PF13673.7 ABA80107.1 - 0.01 15.7 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 ABA80107.1 - 0.078 13.1 2.3 0.33 11.1 0.1 2.3 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain OmpA PF00691.20 ABA80108.1 - 1.5e-18 67.0 0.0 2.1e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 OmpA family LysR_substrate PF03466.20 ABA80109.2 - 6.8e-46 156.3 2.1 8.9e-46 155.9 2.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80109.2 - 2.2e-19 69.1 1.0 4.5e-19 68.1 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 ABA80109.2 - 0.0018 18.1 0.1 0.023 14.6 0.0 2.8 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.12 ABA80109.2 - 0.0091 15.8 0.4 0.069 13.0 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.10 ABA80109.2 - 0.015 15.1 0.0 0.3 10.9 0.0 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_28 PF13518.6 ABA80109.2 - 0.016 15.4 0.0 0.054 13.6 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 ABA80109.2 - 0.021 14.3 0.0 0.063 12.8 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 ABA80109.2 - 0.067 13.1 0.0 0.22 11.4 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF134 PF02001.16 ABA80109.2 - 0.069 13.7 0.1 0.25 11.9 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function DUF134 GerE PF00196.19 ABA80109.2 - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PGM_PMM_IV PF00408.20 ABA80110.1 - 0.065 13.4 0.2 6.4 7.0 0.0 2.4 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain Carboxyl_trans PF01039.22 ABA80111.1 - 3.5e-16 58.9 0.0 4.4e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 ABA80111.1 - 1e-11 44.7 2.4 1.9e-11 43.8 2.4 1.5 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 ABA80111.1 - 0.016 14.6 0.3 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 ABA80111.1 - 0.035 14.0 1.2 0.062 13.2 1.2 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 ABA80111.1 - 0.086 12.9 0.3 0.17 11.9 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 ABA80111.1 - 0.13 12.4 0.7 0.32 11.2 0.7 1.7 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.6 ABA80111.1 - 0.14 12.2 1.4 0.25 11.3 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.9 ABA80111.1 - 0.18 11.9 1.5 3.1 8.0 0.2 2.6 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 ABA80111.1 - 0.23 11.4 0.3 0.41 10.6 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1610 PF07754.11 ABA80111.1 - 1.9 8.5 0.0 1.9 8.5 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Mur_ligase_M PF08245.12 ABA80112.1 - 1.2e-09 38.5 0.0 2.3e-09 37.5 0.0 1.5 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 ABA80112.1 - 0.017 15.3 0.0 0.048 13.9 0.0 1.8 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain NUDIX PF00293.28 ABA80113.1 - 6.9e-28 97.3 0.7 8.2e-28 97.1 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain Peptidase_S41 PF03572.18 ABA80114.1 - 8.4e-53 178.3 0.2 1.3e-52 177.8 0.2 1.3 1 0 0 1 1 1 1 Peptidase family S41 PDZ_6 PF17820.1 ABA80114.1 - 2.1e-14 53.1 0.1 6.2e-14 51.6 0.1 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 ABA80114.1 - 4e-13 49.5 0.1 9.7e-13 48.3 0.1 1.7 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 ABA80114.1 - 9.7e-12 45.1 0.3 2.1e-11 44.0 0.3 1.6 1 0 0 1 1 1 1 PDZ domain TSP_NTD PF17804.1 ABA80114.1 - 0.00054 20.3 0.2 0.00093 19.5 0.0 1.4 2 0 0 2 2 2 1 Tail specific protease N-terminal domain DUF3394 PF11874.8 ABA80114.1 - 0.041 13.6 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) Peptidase_M23 PF01551.22 ABA80115.1 - 1.3e-08 35.0 0.0 2.7e-08 33.9 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M23 CwsA PF10814.8 ABA80115.1 - 0.00097 19.3 2.5 0.00097 19.3 2.5 2.8 2 1 1 3 3 3 1 Cell wall synthesis protein CwsA DUF3450 PF11932.8 ABA80115.1 - 0.15 11.3 8.7 0.08 12.2 4.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4088 PF13317.6 ABA80115.1 - 1.2 8.7 5.6 2.6 7.6 2.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4088) Metalloenzyme PF01676.18 ABA80116.1 - 3e-75 252.8 0.0 3.5e-75 252.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.13 ABA80116.1 - 2.7e-65 219.9 0.0 5.4e-65 218.9 0.0 1.5 2 0 0 2 2 2 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.22 ABA80116.1 - 3.2e-05 23.7 0.0 8e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 ABA80116.1 - 0.0017 17.4 0.1 0.003 16.6 0.1 1.3 1 0 0 1 1 1 1 Alkaline phosphatase PglZ PF08665.12 ABA80116.1 - 0.061 13.4 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 PglZ domain Radical_SAM PF04055.21 ABA80117.1 - 1.7e-21 77.4 0.0 7e-21 75.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 ABA80117.1 - 2.6e-16 59.5 0.6 6.7e-16 58.1 0.6 1.7 1 1 0 1 1 1 1 Uncharacterized protein family UPF0004 B12-binding PF02310.19 ABA80117.1 - 0.042 13.9 0.6 0.13 12.3 0.1 2.1 2 0 0 2 2 2 0 B12 binding domain Lipase_3 PF01764.25 ABA80117.1 - 0.19 11.6 0.0 7 6.5 0.0 2.3 2 0 0 2 2 2 0 Lipase (class 3) DAP_epimerase PF01678.19 ABA80118.2 - 1.5e-49 167.2 0.4 4.4e-25 88.2 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Alpha-amylase PF00128.24 ABA80119.1 - 2.1e-74 251.1 0.0 1e-73 248.8 0.0 1.8 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 ABA80119.1 - 6.2e-05 23.0 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 ABA80119.1 - 0.00076 19.8 1.4 0.0024 18.1 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF3459) hDGE_amylase PF14701.6 ABA80119.1 - 0.0039 16.4 0.0 0.0055 15.8 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain DUF72 PF01904.18 ABA80121.1 - 4e-56 190.6 0.1 4.6e-56 190.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 NMT1 PF09084.11 ABA80122.1 - 1.3e-42 146.2 0.0 1.9e-42 145.6 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 ABA80122.1 - 0.019 14.7 0.1 0.53 9.9 0.1 2.4 1 1 0 1 1 1 0 NMT1-like family ABC_tran PF00005.27 ABA80123.1 - 1.1e-29 103.7 0.0 1.5e-29 103.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 ABA80123.1 - 1.9e-05 24.9 0.0 5.2e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 ABA80123.1 - 0.00034 20.3 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 ABA80123.1 - 0.00068 19.5 0.0 1 9.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA80123.1 - 0.0011 19.4 0.0 0.0019 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA80123.1 - 0.015 15.7 0.1 0.044 14.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 ABA80123.1 - 0.025 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 ABA80123.1 - 0.036 14.1 0.0 0.094 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 ABA80123.1 - 0.04 13.6 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 ABA80123.1 - 0.045 13.9 0.0 0.092 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA80123.1 - 0.097 13.1 0.0 0.25 11.8 0.0 1.6 2 0 0 2 2 2 0 RNA helicase DUF3987 PF13148.6 ABA80123.1 - 0.1 11.6 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) SMC_N PF02463.19 ABA80123.1 - 0.1 12.0 0.0 1.3 8.4 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 ABA80123.1 - 0.17 11.6 0.0 0.41 10.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA80123.1 - 0.18 12.3 0.0 0.48 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA80123.1 - 0.22 11.4 0.0 0.33 10.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 ABA80123.1 - 0.25 11.1 0.1 0.45 10.2 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase BPD_transp_1 PF00528.22 ABA80124.1 - 1.9e-17 63.6 13.4 1.9e-17 63.6 13.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3262 PF11660.8 ABA80124.1 - 6.6 7.2 9.9 3.6 8.0 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3262) Aminotran_3 PF00202.21 ABA80125.2 - 5.4e-89 298.7 0.0 6.6e-89 298.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 ABA80125.2 - 6.5e-05 22.4 0.0 0.00017 21.0 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase Formyl_trans_N PF00551.19 ABA80126.1 - 6.8e-38 130.2 0.0 9.4e-38 129.8 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT PF01842.25 ABA80126.1 - 1e-08 34.8 0.0 2.3e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 ABA80126.1 - 5.3e-07 29.5 0.0 1.7e-05 24.7 0.0 2.6 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 ABA80126.1 - 0.063 13.9 0.0 0.24 12.0 0.0 2.0 2 0 0 2 2 2 0 ACT domain MFS_3 PF05977.13 ABA80127.1 - 1.6e-208 693.4 21.9 1.8e-208 693.2 21.9 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 ABA80127.1 - 8.2e-32 110.5 52.0 8.2e-32 110.5 52.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Topoisom_I PF01028.20 ABA80128.1 - 2.5e-21 76.0 0.0 3.5e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic DNA topoisomerase I, catalytic core DUF3008 PF11450.8 ABA80129.1 - 7.4e-31 106.1 14.2 8.1e-31 106.0 14.2 1.0 1 0 0 1 1 1 1 Protein of unknwon function (DUF3008) SPG4 PF17325.2 ABA80129.1 - 0.016 16.3 1.6 0.02 16.0 1.6 1.1 1 0 0 1 1 1 0 Stationary phase protein 4 DUF4142 PF13628.6 ABA80130.1 - 2.9e-25 89.1 3.0 3.3e-25 88.9 3.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) DUF305 PF03713.13 ABA80130.1 - 0.014 15.6 1.9 0.079 13.1 1.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF305) Glyco_transf_20 PF00982.21 ABA80131.1 - 1.2e-139 466.1 0.0 1.3e-139 466.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 ABA80132.1 - 1.6e-47 161.6 0.0 1.9e-47 161.3 0.0 1.0 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 ABA80132.1 - 1e-08 35.3 0.0 0.00011 22.0 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 ABA80132.1 - 0.00021 20.9 0.0 0.12 11.9 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Peptidase_M20 PF01546.28 ABA80133.1 - 3.4e-11 43.2 0.0 1.4e-10 41.3 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 ABA80133.1 - 0.00016 21.5 0.3 0.0018 18.0 0.3 2.3 1 1 0 1 1 1 1 Peptidase family M28 Bact_transglu_N PF08379.10 ABA80135.1 - 3.9e-17 62.9 0.0 8.6e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region Transglut_core PF01841.19 ABA80135.1 - 2.2e-16 60.3 1.4 2.3e-16 60.3 0.2 1.7 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF553 PF04473.12 ABA80135.1 - 0.061 12.9 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain CP_ATPgrasp_2 PF14403.6 ABA80136.1 - 2.7e-130 434.6 0.0 6.6e-130 433.4 0.0 1.6 2 0 0 2 2 2 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 ABA80136.1 - 4.3e-87 292.2 0.0 6.8e-87 291.6 0.0 1.2 1 0 0 1 1 1 1 A circularly permuted ATPgrasp Alpha-E PF04168.12 ABA80136.1 - 3.5e-53 181.3 1.3 1.2e-52 179.6 1.2 1.9 2 1 0 2 2 2 1 A predicted alpha-helical domain with a conserved ER motif. DUF2126 PF09899.9 ABA80137.1 - 0 1311.0 0.0 0 1310.7 0.0 1.0 1 0 0 1 1 1 1 Putative amidoligase enzyme (DUF2126) Bact_transglu_N PF08379.10 ABA80137.1 - 1.7e-28 99.3 0.5 5.2e-28 97.8 0.5 1.9 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region Transglut_core PF01841.19 ABA80137.1 - 4.2e-17 62.6 0.0 1.1e-16 61.3 0.0 1.8 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF553 PF04473.12 ABA80137.1 - 0.19 11.2 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain 5_nucleotid_C PF02872.18 ABA80138.1 - 9.7e-44 149.4 0.0 1.7e-43 148.5 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 ABA80138.1 - 2.9e-10 41.0 0.0 4.5e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF952 PF06108.12 ABA80139.1 - 4.7e-30 103.4 0.0 5.4e-30 103.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF952) Toprim PF01751.22 ABA80139.1 - 0.12 12.6 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Toprim domain DHO_dh PF01180.21 ABA80140.1 - 1.4e-83 280.5 0.0 1.7e-83 280.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 ABA80140.1 - 0.002 17.6 1.6 0.0031 16.9 1.6 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase DUF4072 PF13284.6 ABA80140.1 - 0.068 13.6 4.0 0.51 10.8 0.6 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4072) AsnC_trans_reg PF01037.21 ABA80141.1 - 1.7e-14 53.5 0.0 1.9e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain AAA_30 PF13604.6 ABA80142.2 - 1.1e-26 93.8 0.1 4.1e-26 91.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 ABA80142.2 - 5e-20 71.1 0.6 1.3e-19 69.7 0.6 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 ABA80142.2 - 7.7e-15 55.5 0.0 2.5e-14 53.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 ABA80142.2 - 1.3e-06 28.3 0.0 0.16 11.7 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 ABA80142.2 - 8.6e-05 23.0 0.2 0.00021 21.7 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain UvrD_C PF13361.6 ABA80142.2 - 0.0001 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain NACHT PF05729.12 ABA80142.2 - 0.00067 19.6 0.2 0.0013 18.6 0.2 1.5 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 ABA80142.2 - 0.00079 19.7 0.3 0.0092 16.3 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 ABA80142.2 - 0.0011 18.9 0.0 0.28 11.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 ABA80142.2 - 0.0016 18.5 0.0 0.0041 17.2 0.0 1.7 2 0 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 ABA80142.2 - 0.0026 17.7 0.9 0.0075 16.2 0.3 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B UvrD-helicase PF00580.21 ABA80142.2 - 0.011 15.3 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Pox_A32 PF04665.12 ABA80142.2 - 0.012 15.1 0.2 0.025 14.1 0.2 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein ABC_tran PF00005.27 ABA80142.2 - 0.016 15.7 0.1 0.031 14.8 0.1 1.4 1 0 0 1 1 1 0 ABC transporter DUF87 PF01935.17 ABA80142.2 - 0.019 15.1 0.1 0.038 14.1 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain ResIII PF04851.15 ABA80142.2 - 0.022 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PIF1 PF05970.14 ABA80142.2 - 0.027 13.6 1.6 0.66 9.1 0.0 2.7 2 1 0 2 2 2 0 PIF1-like helicase Mg_chelatase PF01078.21 ABA80142.2 - 0.027 13.8 0.4 0.061 12.7 0.4 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.9 ABA80142.2 - 0.04 13.1 0.1 0.25 10.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 ABA80142.2 - 0.055 12.7 0.2 0.089 12.0 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 ABA80142.2 - 0.071 13.3 0.2 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 ABA80142.2 - 0.085 12.6 0.2 0.21 11.3 0.2 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein cobW PF02492.19 ABA80142.2 - 0.088 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 ABA80142.2 - 0.17 11.6 0.1 0.6 9.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain ADH_zinc_N PF00107.26 ABA80143.1 - 2.3e-32 111.7 0.1 3.5e-32 111.1 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA80143.1 - 1.9e-14 53.5 0.2 8e-14 51.4 0.0 2.2 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 ABA80143.1 - 4.9e-06 27.6 0.0 9.2e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.8 ABA80143.1 - 0.022 14.5 0.0 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MM_CoA_mutase PF01642.22 ABA80144.1 - 1.6e-128 429.5 0.1 1.9e-128 429.2 0.1 1.1 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 ABA80144.1 - 8e-18 64.6 0.1 1.8e-17 63.5 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain Pyr_redox_2 PF07992.14 ABA80145.1 - 2.7e-69 233.7 4.3 3.3e-69 233.3 4.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 ABA80145.1 - 4.4e-40 136.4 4.9 8.1e-40 135.5 0.2 2.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 ABA80145.1 - 4e-18 65.7 9.4 4.8e-17 62.3 1.2 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA80145.1 - 1.1e-08 34.7 5.4 5.3e-05 22.6 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA80145.1 - 1.3e-08 34.4 15.1 6.1e-07 28.9 1.9 3.9 3 1 0 4 4 4 3 FAD binding domain GIDA PF01134.22 ABA80145.1 - 7.8e-08 31.8 8.2 9.2e-07 28.3 0.5 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 ABA80145.1 - 9.6e-08 31.8 0.2 9.6e-08 31.8 0.2 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA80145.1 - 1.8e-07 31.3 2.1 0.0001 22.4 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 ABA80145.1 - 2.2e-06 27.1 2.9 9.1e-05 21.8 0.1 2.4 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 ABA80145.1 - 4.5e-05 22.9 6.1 0.028 13.7 0.6 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 ABA80145.1 - 5.8e-05 22.0 13.9 0.00049 18.9 0.6 4.1 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.18 ABA80145.1 - 0.00052 19.9 4.5 0.0028 17.6 0.6 2.8 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 ABA80145.1 - 0.0012 18.1 4.1 0.59 9.2 0.1 3.0 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 ABA80145.1 - 0.0024 17.2 6.1 0.025 13.9 1.7 2.6 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 ABA80145.1 - 0.0038 16.9 14.2 0.29 10.7 0.4 4.0 4 0 0 4 4 4 2 FAD dependent oxidoreductase XdhC_C PF13478.6 ABA80145.1 - 0.0052 17.3 0.2 0.81 10.2 0.1 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 ABA80145.1 - 0.043 13.4 0.4 0.043 13.4 0.4 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 ABA80145.1 - 0.054 12.5 5.3 0.39 9.7 0.5 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein MAPEG PF01124.18 ABA80146.1 - 2.7e-22 79.1 9.0 3.2e-22 78.8 9.0 1.0 1 0 0 1 1 1 1 MAPEG family 2-oxoacid_dh PF00198.23 ABA80147.2 - 6.5e-83 277.7 0.0 8.4e-83 277.4 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 ABA80147.2 - 9.3e-48 160.0 4.0 2.6e-23 81.6 0.5 2.6 2 0 0 2 2 2 2 Biotin-requiring enzyme E3_binding PF02817.17 ABA80147.2 - 2.4e-10 40.6 0.3 5.2e-10 39.5 0.3 1.6 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 ABA80147.2 - 7.6e-10 38.5 0.0 0.0059 16.4 0.1 5.1 3 2 2 5 5 5 3 Biotin-lipoyl like RnfC_N PF13375.6 ABA80147.2 - 3e-06 27.1 0.6 0.0092 15.9 0.1 3.0 2 0 0 2 2 2 2 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 ABA80147.2 - 3.6e-06 26.9 1.6 0.041 13.8 0.1 2.9 3 1 0 3 3 3 2 Glycine cleavage H-protein HlyD_D23 PF16576.5 ABA80147.2 - 0.00065 19.0 0.6 0.29 10.3 0.1 3.2 2 2 0 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion MYEOV2 PF15004.6 ABA80147.2 - 0.009 16.4 0.3 4.2 7.9 0.0 2.8 2 0 0 2 2 2 1 Myeloma-overexpressed-like HlyD_3 PF13437.6 ABA80147.2 - 0.0097 16.6 4.6 0.62 10.8 0.1 3.8 3 2 2 5 5 5 1 HlyD family secretion protein HTH_48 PF17906.1 ABA80147.2 - 0.047 13.8 0.0 14 5.9 0.0 2.6 2 0 0 2 2 2 0 HTH domain in Mos1 transposase DUF1456 PF07308.13 ABA80147.2 - 0.052 13.9 0.0 5.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) Transket_pyr PF02779.24 ABA80148.1 - 1.5e-64 217.0 0.0 2.6e-64 216.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain E1_dh PF00676.20 ABA80148.1 - 4.7e-58 196.5 0.0 7.7e-58 195.8 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component OxoGdeHyase_C PF16870.5 ABA80148.1 - 1.5e-54 183.8 0.0 2.8e-54 183.0 0.0 1.5 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase C-terminal 2-oxogl_dehyd_N PF16078.5 ABA80148.1 - 6.1e-15 54.5 0.2 1.3e-14 53.5 0.2 1.6 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase N-terminus CoA_binding PF02629.19 ABA80149.1 - 2.7e-32 111.3 1.6 2e-31 108.5 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 ABA80149.1 - 1.3e-19 70.6 0.1 1.9e-19 70.0 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 ABA80149.1 - 4.8e-08 32.9 0.2 9.5e-08 31.9 0.2 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 ABA80149.1 - 0.019 15.5 0.0 0.058 13.9 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain ATP-grasp_2 PF08442.10 ABA80150.1 - 2.7e-76 255.6 0.3 4.6e-76 254.9 0.1 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 ABA80150.1 - 1.7e-28 99.4 2.3 3.6e-28 98.3 2.3 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 ABA80150.1 - 6e-09 35.7 0.3 7.6e-08 32.1 0.3 2.4 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 ABA80150.1 - 0.021 14.6 0.0 0.14 11.9 0.0 2.2 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Ldh_1_N PF00056.23 ABA80151.2 - 5.8e-38 130.2 0.1 1.1e-37 129.3 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 ABA80151.2 - 1.5e-27 96.6 0.0 2e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.14 ABA80151.2 - 0.0073 15.9 0.3 0.017 14.7 0.3 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 ABA80151.2 - 0.038 13.9 0.4 0.096 12.6 0.3 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_hydro_4 PF02056.16 ABA80151.2 - 0.044 13.4 0.1 0.2 11.2 0.0 2.0 1 1 1 2 2 2 0 Family 4 glycosyl hydrolase DUF357 PF04010.13 ABA80151.2 - 0.16 12.0 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF357) NAD_Gly3P_dh_N PF01210.23 ABA80151.2 - 1.1 9.2 3.6 21 5.0 0.4 2.9 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TauE PF01925.19 ABA80152.1 - 5e-26 91.8 31.2 6e-26 91.5 31.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE HpcH_HpaI PF03328.14 ABA80153.1 - 5.7e-48 163.0 0.1 1.1e-47 162.1 0.1 1.5 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 ABA80153.1 - 2.8e-10 39.9 0.1 4e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PEP_mutase PF13714.6 ABA80153.1 - 0.0058 16.1 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase UvrD_C_2 PF13538.6 ABA80153.1 - 0.029 14.2 0.0 0.067 13.0 0.0 1.6 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain NnrU PF07298.11 ABA80154.1 - 3.1e-36 124.9 15.6 3.9e-36 124.6 15.6 1.0 1 0 0 1 1 1 1 NnrU protein DUF202 PF02656.15 ABA80154.1 - 2.6 8.6 13.0 2.8 8.5 1.1 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DUF1737 PF08410.10 ABA80155.1 - 3.6e-30 103.6 0.0 4.1e-30 103.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1737) MaoC_dehydratas PF01575.19 ABA80156.1 - 6.8e-08 32.1 0.0 2.7e-05 23.7 0.0 2.4 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 ABA80156.1 - 0.00082 19.5 0.0 0.0035 17.5 0.0 2.1 2 1 0 2 2 2 1 N-terminal half of MaoC dehydratase Sdh_cyt PF01127.22 ABA80157.1 - 3.9e-29 101.1 4.2 4.5e-29 100.9 4.2 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_D PF02313.17 ABA80157.1 - 0.0012 19.0 1.8 0.0015 18.6 1.8 1.2 1 0 0 1 1 1 1 Fumarate reductase subunit D Sdh_cyt PF01127.22 ABA80158.1 - 5.5e-13 49.0 1.4 6.6e-13 48.8 1.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FAD_binding_2 PF00890.24 ABA80159.1 - 4.7e-124 414.6 3.1 6.3e-124 414.2 3.1 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 ABA80159.1 - 5.4e-39 133.1 0.2 7.7e-39 132.6 0.2 1.2 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term GIDA PF01134.22 ABA80159.1 - 3.7e-05 23.0 2.4 0.038 13.1 2.6 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 ABA80159.1 - 0.0003 20.1 0.7 0.00066 19.0 0.4 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 ABA80159.1 - 0.0015 17.9 0.8 0.024 13.9 0.1 2.7 3 0 0 3 3 3 1 Thi4 family DAO PF01266.24 ABA80159.1 - 0.0025 17.5 1.5 0.044 13.4 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 ABA80159.1 - 0.0032 16.8 1.8 0.0047 16.2 0.8 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 ABA80159.1 - 0.11 11.8 4.8 0.88 8.8 4.8 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 ABA80159.1 - 0.2 10.3 0.7 0.52 8.9 0.6 1.7 2 0 0 2 2 2 0 HI0933-like protein Dehydratase_LU PF02286.15 ABA80160.1 - 0.0091 14.6 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 Dehydratase large subunit Fer2_3 PF13085.6 ABA80162.1 - 1.7e-30 105.2 0.0 3.2e-30 104.4 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 ABA80162.1 - 1.7e-08 34.9 4.7 1.7e-08 34.9 4.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA80162.1 - 3.5e-07 30.2 3.0 3.5e-07 30.2 3.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80162.1 - 6.7e-07 29.7 11.1 9.5e-06 26.0 9.7 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer2 PF00111.27 ABA80162.1 - 0.05 13.5 0.6 0.05 13.5 0.6 2.2 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.6 ABA80162.1 - 0.23 12.4 8.0 4.2 8.4 0.9 3.0 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 ABA80162.1 - 0.33 11.2 13.4 0.18 12.0 8.6 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 ABA80162.1 - 0.51 11.0 17.8 0.23 12.1 11.2 3.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain DUF1127 PF06568.11 ABA80163.1 - 0.0098 15.6 8.6 0.1 12.3 8.6 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1127) Elf1 PF05129.13 ABA80163.1 - 0.023 14.7 1.0 0.033 14.2 1.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like FCD PF07729.12 ABA80164.2 - 2e-18 67.0 10.5 2e-18 67.0 10.5 1.8 2 1 0 2 2 2 1 FCD domain GntR PF00392.21 ABA80164.2 - 1.1e-13 50.7 0.5 2.4e-13 49.5 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PaaX PF07848.12 ABA80164.2 - 0.024 14.9 0.1 0.049 13.8 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein DUF3253 PF11625.8 ABA80164.2 - 0.052 13.8 0.1 0.24 11.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3253) DUF45 PF01863.17 ABA80165.1 - 1.1e-47 162.8 0.0 1.2e-47 162.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF45 FYDLN_acid PF09538.10 ABA80166.2 - 6.1e-28 97.6 5.2 6.9e-28 97.4 5.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) PorA PF11271.8 ABA80166.2 - 0.0028 17.0 0.2 0.0033 16.8 0.2 1.3 1 1 0 1 1 1 1 Porin PorA DUF2722 PF10846.8 ABA80166.2 - 2.1 7.2 4.6 2.5 7.0 4.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2722) Rick_17kDa_Anti PF05433.15 ABA80167.1 - 4.3e-08 32.9 16.4 6.4e-08 32.3 16.4 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 ABA80167.1 - 2.7e-05 24.1 23.1 9.8e-05 22.3 16.3 1.6 1 1 1 2 2 2 2 Glycine zipper Gly-zipper_YMGG PF13441.6 ABA80167.1 - 3e-05 23.7 20.4 3e-05 23.7 20.4 1.7 1 1 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 ABA80167.1 - 0.039 13.7 11.6 0.039 13.7 11.6 2.1 1 1 1 2 2 2 0 Glycine-zipper domain TraT PF05818.12 ABA80167.1 - 0.27 10.9 5.0 0.28 10.8 5.0 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein SLATT_fungal PF18142.1 ABA80167.1 - 0.77 9.8 5.4 0.93 9.5 5.4 1.3 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain Bacteriocin_IIc PF10439.9 ABA80167.1 - 1.7 8.8 17.0 9.2 6.5 17.0 2.0 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DUF3482 PF11981.8 ABA80167.1 - 2 7.7 10.9 2.3 7.6 10.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Adenine_deam_C PF13382.6 ABA80168.1 - 5.1e-64 214.7 0.0 1.3e-63 213.4 0.0 1.7 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 ABA80168.1 - 1.6e-21 77.0 0.6 3.5e-19 69.3 0.6 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 ABA80168.1 - 1.1e-11 44.9 0.6 0.00012 21.7 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family EamA PF00892.20 ABA80169.2 - 2.1e-20 73.3 40.1 2.9e-10 40.4 11.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 ABA80169.2 - 0.0007 19.2 1.0 0.0007 19.2 1.0 1.5 2 0 0 2 2 2 1 Solute carrier family 35 Mg_trans_NIPA PF05653.14 ABA80169.2 - 0.11 11.6 17.3 0.24 10.5 5.2 2.4 3 0 0 3 3 3 0 Magnesium transporter NIPA CreD PF06123.12 ABA80169.2 - 0.13 11.0 7.0 0.19 10.5 7.0 1.2 1 0 0 1 1 1 0 Inner membrane protein CreD Nuc_sug_transp PF04142.15 ABA80169.2 - 9.7 5.3 10.2 2e+02 0.9 10.2 2.2 1 1 0 1 1 1 0 Nucleotide-sugar transporter PRK PF00485.18 ABA80170.1 - 3.2e-07 30.3 0.0 7.5e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 ABA80170.1 - 2.6e-06 27.7 0.0 9.2e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 ABA80170.1 - 3e-06 27.8 0.0 6.8e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA80170.1 - 0.0083 16.5 0.3 0.011 16.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 ABA80170.1 - 0.014 15.9 0.1 0.028 15.0 0.0 1.5 2 0 0 2 2 1 0 ABC transporter AAA_29 PF13555.6 ABA80170.1 - 0.015 15.0 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 ABA80170.1 - 0.017 15.5 0.0 0.026 14.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 ABA80170.1 - 0.025 13.8 0.0 0.044 13.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 ABA80170.1 - 0.034 14.4 0.1 0.065 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA80170.1 - 0.034 14.4 0.0 0.044 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 ABA80170.1 - 0.037 14.5 1.1 0.88 10.0 0.5 2.4 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 ABA80170.1 - 0.038 13.0 0.2 0.054 12.5 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB TsaE PF02367.17 ABA80170.1 - 0.052 13.6 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 ABA80170.1 - 0.06 13.4 0.0 0.071 13.2 0.0 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 ABA80170.1 - 0.06 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 ABA80170.1 - 0.082 12.6 1.0 0.13 12.0 0.3 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 ABA80170.1 - 0.086 12.4 1.0 0.29 10.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA80170.1 - 0.093 12.1 0.2 0.15 11.5 0.2 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 ABA80170.1 - 0.14 12.1 0.2 0.64 10.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 ABA80170.1 - 0.21 11.5 0.0 0.39 10.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_PrkA PF08298.11 ABA80170.1 - 0.25 10.2 0.0 2.8 6.8 0.0 2.1 2 0 0 2 2 2 0 PrkA AAA domain ABC_tran PF00005.27 ABA80171.1 - 5.2e-30 104.7 0.0 6.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80171.1 - 2.7e-09 37.3 0.0 2.2e-05 24.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80171.1 - 3.1e-06 26.8 0.0 0.023 14.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80171.1 - 0.0019 17.9 0.0 0.004 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA80171.1 - 0.0035 17.9 0.0 0.0066 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA80171.1 - 0.0046 16.9 0.0 0.0098 15.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 ABA80171.1 - 0.005 17.2 0.1 0.0077 16.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 ABA80171.1 - 0.014 15.5 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 ABA80171.1 - 0.016 15.3 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Dynamin family AAA_22 PF13401.6 ABA80171.1 - 0.027 14.7 0.0 0.38 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 ABA80171.1 - 0.027 14.2 0.0 0.037 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 ABA80171.1 - 0.041 13.5 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.8 ABA80171.1 - 0.041 13.1 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) DUF815 PF05673.13 ABA80171.1 - 0.092 11.9 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IIGP PF05049.13 ABA80171.1 - 0.1 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) ABC_ATPase PF09818.9 ABA80171.1 - 0.11 11.3 0.1 11 4.7 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 ABA80171.1 - 0.17 11.5 1.8 1.3 8.7 1.8 2.0 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 ABA80172.1 - 9.8e-49 165.9 38.2 1.3e-48 165.5 38.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_4 PF13407.6 ABA80173.1 - 5.2e-42 144.2 4.5 6.7e-42 143.8 4.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 ABA80173.1 - 1.1e-19 70.9 0.2 3.3e-19 69.4 0.2 1.6 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family TPP_enzyme_N PF02776.18 ABA80173.1 - 0.057 13.0 0.2 0.12 12.0 0.2 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF3798 PF12683.7 ABA80173.1 - 0.1 12.0 0.3 0.3 10.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3798) ROK PF00480.20 ABA80174.1 - 3.3e-14 53.1 0.0 8.1e-14 51.8 0.0 1.6 1 1 0 1 1 1 1 ROK family HTH_24 PF13412.6 ABA80174.1 - 5.3e-09 35.5 0.6 1.6e-08 34.0 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 ABA80174.1 - 2.9e-08 33.5 1.3 9.2e-08 31.9 0.5 2.3 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 ABA80174.1 - 2.6e-07 30.5 1.3 8e-07 29.0 0.5 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 ABA80174.1 - 1.3e-05 25.0 0.6 3.9e-05 23.5 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 ABA80174.1 - 0.0001 22.7 0.1 0.00022 21.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 ABA80174.1 - 0.0014 18.4 1.9 0.016 15.0 0.6 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 ABA80174.1 - 0.0052 16.8 0.4 0.018 15.1 0.4 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain DprA_WH PF17782.1 ABA80174.1 - 0.019 15.1 0.2 0.019 15.1 0.2 2.8 4 0 0 4 4 3 0 DprA winged helix domain HTH_AsnC-type PF13404.6 ABA80174.1 - 0.022 14.6 0.4 0.11 12.3 0.4 2.3 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 ABA80174.1 - 0.025 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 ABA80174.1 - 0.046 14.1 0.0 0.097 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_47 PF16221.5 ABA80174.1 - 0.064 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 winged helix-turn-helix Sigma70_r4 PF04545.16 ABA80174.1 - 0.065 12.8 0.1 0.18 11.4 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 ABA80174.1 - 0.092 12.2 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF977 PF06163.11 ABA80174.1 - 0.15 12.0 0.1 0.29 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_5 PF01022.20 ABA80174.1 - 0.16 11.9 0.1 0.34 10.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RPA_C PF08784.11 ABA80174.1 - 0.16 12.6 0.0 0.32 11.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal Proton_antipo_M PF00361.20 ABA80175.1 - 1.9e-65 221.0 23.9 1.9e-65 221.0 23.9 3.5 5 0 0 5 5 5 1 Proton-conducting membrane transporter MnhB PF04039.13 ABA80175.1 - 3.5e-33 114.6 15.1 3.5e-33 114.6 15.1 7.5 3 2 4 9 9 9 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 ABA80175.1 - 4.8e-18 65.1 11.8 4.8e-18 65.1 11.8 6.1 7 1 1 8 8 8 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 ABA80175.1 - 1.1e-08 35.0 0.4 1.1e-08 35.0 0.4 3.5 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 ABA80176.1 - 5.5e-21 74.2 4.6 6.3e-21 74.0 4.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MacB_PCD PF12704.7 ABA80176.1 - 0.026 14.9 1.0 0.044 14.2 1.0 1.3 1 0 0 1 1 1 0 MacB-like periplasmic core domain Proton_antipo_M PF00361.20 ABA80177.1 - 2.9e-43 148.2 18.5 2.9e-43 148.2 18.5 2.1 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 ABA80177.1 - 9e-05 22.5 0.0 0.00037 20.5 0.0 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdeh_related PF10125.9 ABA80177.1 - 0.00074 19.0 4.7 0.00074 19.0 4.7 3.2 3 0 0 3 3 3 2 NADH dehydrogenase I, subunit N related protein MNHE PF01899.16 ABA80178.1 - 1.9e-41 141.2 4.7 2.1e-41 141.1 4.7 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit YdjM PF04307.14 ABA80178.1 - 0.33 10.2 3.4 0.21 10.9 1.9 1.4 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase MrpF_PhaF PF04066.13 ABA80179.1 - 1.1e-18 67.3 7.9 1.1e-18 67.3 7.9 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 ABA80180.1 - 3.3e-20 72.1 6.0 4.1e-20 71.8 6.0 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Phage_holin_3_6 PF07332.11 ABA80180.1 - 0.15 12.1 5.5 4.2 7.5 4.5 2.0 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III VMA21 PF09446.10 ABA80180.1 - 0.18 11.9 1.9 0.37 10.9 0.0 2.1 2 1 0 2 2 2 0 VMA21-like domain Deltameth_res PF16020.5 ABA80180.1 - 0.81 9.6 2.4 2.7 7.9 0.3 2.3 2 0 0 2 2 2 0 Deltamethrin resistance CitMHS PF03600.16 ABA80181.1 - 5.9e-50 170.2 21.9 5.9e-50 170.2 21.9 1.7 2 0 0 2 2 2 1 Citrate transporter DUF179 PF02622.15 ABA80182.1 - 3.5e-45 153.8 0.0 4e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 DsbC PF11412.8 ABA80183.1 - 1.2e-20 73.7 0.0 1.9e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 Disulphide bond corrector protein DsbC UDG PF03167.19 ABA80184.1 - 1.9e-42 144.9 0.0 2.5e-42 144.5 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily OTCace_N PF02729.21 ABA80185.1 - 6.4e-40 136.6 0.2 8.8e-40 136.1 0.2 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 ABA80185.1 - 9.3e-22 77.8 0.0 5e-21 75.4 0.0 2.1 2 1 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Amidohydro_3 PF07969.11 ABA80186.1 - 3.3e-12 46.6 0.8 7.6e-10 38.8 0.0 3.1 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_1 PF01979.20 ABA80186.1 - 7.1e-12 45.3 0.0 1.1e-11 44.7 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family G3P_acyltransf PF02660.15 ABA80187.1 - 1.1e-48 165.4 15.7 1.3e-48 165.1 15.7 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase GCS2 PF04107.13 ABA80188.1 - 4e-91 305.4 0.1 5.3e-91 305.0 0.1 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Methyltrans_RNA PF04452.14 ABA80190.1 - 2.8e-55 187.1 0.0 3.3e-55 186.9 0.0 1.1 1 0 0 1 1 1 1 RNA methyltransferase NARP1 PF12569.8 ABA80190.1 - 0.31 9.9 0.0 0.4 9.5 0.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 UbiA PF01040.18 ABA80191.1 - 3.1e-52 177.4 28.2 4e-52 177.0 28.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family OmpA PF00691.20 ABA80192.1 - 1e-22 80.3 0.0 7.5e-22 77.5 0.0 2.3 2 0 0 2 2 2 1 OmpA family BON PF04972.17 ABA80192.1 - 1.5e-07 31.6 2.9 0.0042 17.3 0.2 4.0 5 0 0 5 5 5 2 BON domain SepRS_C PF18006.1 ABA80192.1 - 0.033 14.3 0.1 0.12 12.5 0.1 1.9 2 0 0 2 2 2 0 O-phosphoseryl-tRNA synthetase C-terminal domain HemX PF04375.14 ABA80193.1 - 0.0024 17.2 0.1 0.0027 17.1 0.1 1.0 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase HemY_N PF07219.13 ABA80193.1 - 0.0041 17.3 2.2 0.0053 16.9 2.2 1.1 1 0 0 1 1 1 1 HemY protein N-terminus APG6_N PF17675.1 ABA80193.1 - 0.0054 17.3 3.1 0.0068 16.9 3.1 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region LapA_dom PF06305.11 ABA80193.1 - 0.0077 16.0 0.4 0.017 14.9 0.0 1.7 2 1 0 2 2 2 1 Lipopolysaccharide assembly protein A domain Lebercilin PF15619.6 ABA80193.1 - 0.016 14.9 3.3 0.026 14.2 3.3 1.3 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease FtsX PF02687.21 ABA80193.1 - 0.031 14.8 0.0 0.037 14.5 0.0 1.1 1 0 0 1 1 1 0 FtsX-like permease family Nsp1_C PF05064.13 ABA80193.1 - 0.035 13.9 1.6 0.046 13.5 1.6 1.2 1 0 0 1 1 1 0 Nsp1-like C-terminal region DUF1664 PF07889.12 ABA80193.1 - 0.038 14.0 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) WzyE PF06899.11 ABA80193.1 - 0.044 12.7 0.0 0.044 12.7 0.0 1.1 1 0 0 1 1 1 0 WzyE protein, O-antigen assembly polymerase Med30 PF11315.8 ABA80193.1 - 0.057 13.6 0.5 0.073 13.3 0.5 1.3 1 0 0 1 1 1 0 Mediator complex subunit 30 IFT57 PF10498.9 ABA80193.1 - 0.059 12.3 0.2 0.066 12.2 0.2 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 TMF_DNA_bd PF12329.8 ABA80193.1 - 0.064 13.3 1.9 0.52 10.3 0.2 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Na_H_Exchanger PF00999.21 ABA80193.1 - 0.085 11.6 0.1 0.11 11.3 0.1 1.1 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family FAM76 PF16046.5 ABA80193.1 - 0.25 10.7 0.2 0.27 10.5 0.2 1.0 1 0 0 1 1 1 0 FAM76 protein Med21 PF11221.8 ABA80193.1 - 4.9 7.4 7.7 5.6 7.2 1.5 2.0 1 1 1 2 2 2 0 Subunit 21 of Mediator complex Abhydrolase_3 PF07859.13 ABA80194.1 - 3e-12 46.9 1.6 3.9e-12 46.5 1.6 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 ABA80194.1 - 2.2e-05 25.2 13.3 2.2e-05 25.2 13.3 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family Thioesterase PF00975.20 ABA80194.1 - 0.00076 19.7 1.8 0.0019 18.4 1.5 1.7 2 0 0 2 2 2 1 Thioesterase domain Hydrolase_4 PF12146.8 ABA80194.1 - 0.00094 18.5 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DUF2974 PF11187.8 ABA80194.1 - 0.01 15.4 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DUF3089 PF11288.8 ABA80194.1 - 0.068 12.7 0.3 0.36 10.3 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3089) Chlorophyllase2 PF12740.7 ABA80194.1 - 0.23 10.3 0.0 0.34 9.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme GxGYxYP_C PF14323.6 ABA80194.1 - 0.28 11.0 0.2 0.43 10.4 0.2 1.2 1 0 0 1 1 1 0 GxGYxYP putative glycoside hydrolase C-terminal domain Aldedh PF00171.22 ABA80195.2 - 5.6e-163 542.7 0.3 6.4e-163 542.5 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF21 PF01595.20 ABA80196.1 - 1e-46 158.9 2.9 1.6e-46 158.2 2.9 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 ABA80196.1 - 2.3e-20 72.4 0.2 8e-20 70.6 0.0 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 ABA80196.1 - 4.8e-11 42.9 1.6 1.7e-05 25.2 0.2 3.0 3 0 0 3 3 3 2 CBS domain CtsR_C PF17727.1 ABA80196.1 - 0.11 12.7 0.6 0.23 11.6 0.6 1.5 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain Sigma70_r2 PF04542.14 ABA80197.1 - 7.1e-14 51.3 1.0 1.2e-13 50.6 1.0 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 ABA80197.1 - 4e-06 26.2 0.1 7.8e-06 25.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 ABA80197.1 - 7.2e-05 22.4 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_16 PF12645.7 ABA80197.1 - 0.05 13.6 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 ABA80197.1 - 0.17 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3520 PF12034.8 ABA80198.1 - 6.1e-65 218.8 0.0 9e-65 218.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3520) vWF_A PF12450.8 ABA80198.1 - 3.1e-34 116.8 0.0 5.3e-34 116.1 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor VWA PF00092.28 ABA80198.1 - 1.1e-20 74.6 0.0 1.5e-20 74.1 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 ABA80198.1 - 9.7e-15 55.1 0.0 2.2e-14 54.0 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 ABA80198.1 - 2e-09 37.6 0.0 3.5e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Sec23_trunk PF04811.15 ABA80198.1 - 0.16 11.5 0.0 0.43 10.1 0.0 1.6 2 0 0 2 2 2 0 Sec23/Sec24 trunk domain HSP20 PF00011.21 ABA80199.1 - 5.7e-17 61.7 0.0 7.6e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 ABA80199.1 - 0.0014 18.1 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA Trypsin PF00089.26 ABA80200.2 - 1.1e-11 45.0 0.0 3.7e-11 43.2 0.0 1.7 2 0 0 2 2 2 1 Trypsin Trypsin_2 PF13365.6 ABA80200.2 - 1.5e-11 45.4 0.0 2.2e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Peptidase_S46 PF10459.9 ABA80200.2 - 0.14 10.7 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase S46 CCG PF02754.16 ABA80201.1 - 1.1e-25 89.7 6.8 2.2e-12 47.0 0.2 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_7 PF12838.7 ABA80201.1 - 5.1e-12 46.2 5.5 1.3e-11 44.9 5.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80201.1 - 1.7e-11 44.4 2.9 4.2e-11 43.1 2.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA80201.1 - 3.9e-10 40.1 3.4 8.6e-10 39.0 3.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA80201.1 - 5.3e-07 29.7 3.4 0.021 15.0 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA80201.1 - 6.4e-07 29.4 19.3 1.2e-05 25.3 9.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA80201.1 - 9.2e-07 29.7 3.3 1.9e-06 28.7 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 ABA80201.1 - 9.8e-07 28.6 11.3 0.0044 17.1 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 ABA80201.1 - 4.2e-06 26.8 11.2 0.0043 17.4 2.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 ABA80201.1 - 4.5e-06 26.3 10.8 0.0037 17.0 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 ABA80201.1 - 2.7e-05 24.0 14.8 0.021 14.9 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 ABA80201.1 - 0.001 19.1 9.7 0.0091 16.1 9.7 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 ABA80201.1 - 0.1 13.5 10.2 2.5 9.0 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 ABA80201.1 - 0.18 12.0 7.2 1.9 8.7 0.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 ABA80201.1 - 0.34 11.7 3.5 20 6.0 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 ABA80201.1 - 1.2 10.2 19.1 2.8 9.1 5.4 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 ABA80201.1 - 2 9.0 9.6 9.4 6.9 1.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_4 PF01565.23 ABA80202.1 - 4.2e-16 58.9 2.1 9.7e-16 57.8 2.1 1.6 1 1 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 ABA80203.1 - 1.1e-57 195.6 0.0 1.7e-57 195.0 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 ABA80203.1 - 3.1e-34 117.7 1.6 4.6e-34 117.1 0.8 1.7 2 0 0 2 2 2 1 FAD binding domain BRK PF07533.16 ABA80203.1 - 0.17 11.5 0.0 0.39 10.4 0.0 1.6 1 0 0 1 1 1 0 BRK domain DUF599 PF04654.12 ABA80204.1 - 4.5e-53 179.8 3.1 5.2e-53 179.6 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF599 GATase1_like PF07090.11 ABA80205.2 - 1.5e-05 24.6 0.0 2.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Putative glutamine amidotransferase MacB_PCD PF12704.7 ABA80205.2 - 2.8 8.3 5.4 16 5.8 0.0 3.2 3 1 1 4 4 4 0 MacB-like periplasmic core domain DUF4159 PF13709.6 ABA80206.1 - 1.3e-57 194.6 0.0 2.9e-57 193.4 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4159) BatA PF07584.11 ABA80206.1 - 2.5e-17 63.0 10.0 2.5e-17 63.0 10.0 2.1 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal DUF58 PF01882.18 ABA80207.1 - 2.1e-14 53.6 0.8 5.3e-14 52.3 0.8 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 ABA80208.1 - 1.3e-57 193.3 0.0 2e-57 192.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA80208.1 - 3e-12 46.7 0.0 6.5e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 ABA80208.1 - 2.8e-10 39.9 2.4 7.6e-10 38.5 2.4 1.7 1 0 0 1 1 1 1 AAA lid domain RuvB_N PF05496.12 ABA80208.1 - 0.00051 19.8 0.0 0.076 12.8 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 ABA80208.1 - 0.00058 19.6 0.0 0.002 17.9 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 ABA80208.1 - 0.0074 15.7 0.3 0.2 11.0 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 ABA80208.1 - 0.0093 16.4 0.4 0.027 14.9 0.3 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA80208.1 - 0.011 16.1 0.0 0.026 15.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 ABA80208.1 - 0.034 13.2 0.0 1.2 8.1 0.0 2.2 2 0 0 2 2 2 0 MCM P-loop domain AAA_29 PF13555.6 ABA80208.1 - 0.13 12.1 0.2 0.3 10.9 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 ABA80208.1 - 0.13 12.6 0.1 8.3 6.7 0.2 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 ABA80208.1 - 0.14 11.4 0.0 0.36 10.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin DUF1285 PF06938.11 ABA80209.1 - 1.6e-57 193.6 0.0 1.9e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1285) DUF2798 PF11391.8 ABA80210.1 - 4.8e-21 74.5 5.0 5.5e-21 74.4 5.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2798) OATP PF03137.20 ABA80210.1 - 0.072 11.4 1.4 0.082 11.2 1.4 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF5400 PF17379.2 ABA80210.1 - 0.079 13.4 0.2 0.093 13.2 0.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5400) zf-CHCC PF10276.9 ABA80211.2 - 4.1e-19 68.3 1.3 5e-19 68.1 1.3 1.1 1 0 0 1 1 1 1 Zinc-finger domain DNA_pol_A PF00476.20 ABA80212.1 - 1.1e-137 459.1 0.0 1.4e-137 458.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 ABA80212.1 - 8.5e-55 185.0 0.0 1.7e-54 184.0 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain DNA_pol_A_exo1 PF01612.20 ABA80212.1 - 9.3e-37 126.4 0.0 1.8e-36 125.5 0.0 1.5 1 0 0 1 1 1 1 3'-5' exonuclease 5_3_exonuc PF01367.20 ABA80212.1 - 2.4e-29 101.8 0.0 5.6e-29 100.6 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HIT PF01230.23 ABA80213.2 - 4.1e-22 78.7 0.0 4.8e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 ABA80213.2 - 2.2e-12 47.5 0.0 2.6e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding PfkB PF00294.24 ABA80214.1 - 3.1e-45 154.8 0.0 4e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MEDS PF14417.6 ABA80214.1 - 0.013 15.4 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HhH-GPD PF00730.25 ABA80215.1 - 4.6e-19 68.9 0.0 7.9e-19 68.1 0.0 1.4 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 ABA80215.1 - 2.6e-08 33.3 0.0 6.6e-08 32.0 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 ABA80215.1 - 7.8e-07 29.3 6.4 1.3e-06 28.5 6.4 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_8 PF14716.6 ABA80215.1 - 0.13 12.7 0.0 0.34 11.3 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain DNA_binding_1 PF01035.20 ABA80216.1 - 4.9e-30 103.5 0.1 1.6e-29 101.8 0.0 1.8 2 0 0 2 2 2 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_18 PF12833.7 ABA80216.1 - 2.9e-17 62.7 0.2 5.7e-17 61.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA80216.1 - 1.5e-10 40.9 0.0 7.7e-09 35.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.7 ABA80216.1 - 0.0054 16.6 0.1 0.017 15.0 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 ABA80216.1 - 0.0095 15.9 0.0 0.031 14.3 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TetR_N PF00440.23 ABA80216.1 - 0.094 12.5 1.7 0.52 10.1 0.1 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.6 ABA80216.1 - 0.16 11.5 0.0 2.8 7.6 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding OmpA PF00691.20 ABA80217.1 - 1.3e-22 79.9 0.0 2.5e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 OmpA family Gly-zipper_Omp PF13488.6 ABA80217.1 - 9.6e-07 28.7 15.2 9.6e-07 28.7 15.2 2.8 3 0 0 3 3 3 1 Glycine zipper Gly-zipper_YMGG PF13441.6 ABA80217.1 - 0.00031 20.4 18.0 0.00031 20.4 18.0 2.5 3 0 0 3 3 3 1 YMGG-like Gly-zipper Pilus_CpaD PF09476.10 ABA80217.1 - 0.012 15.3 0.3 0.029 14.1 0.1 1.7 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) Romo1 PF10247.9 ABA80217.1 - 0.051 13.9 2.0 2.2 8.7 0.1 2.6 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 TraT PF05818.12 ABA80217.1 - 0.15 11.7 4.4 0.28 10.9 4.4 1.5 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Rick_17kDa_Anti PF05433.15 ABA80217.1 - 0.26 11.2 27.1 0.09 12.7 20.8 3.2 2 1 0 2 2 2 0 Glycine zipper 2TM domain FCD PF07729.12 ABA80218.1 - 1.1e-22 80.7 11.8 2.1e-22 79.8 11.8 1.5 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 ABA80218.1 - 6.1e-20 70.6 1.0 1.4e-19 69.5 1.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 ABA80218.1 - 2.3e-05 24.2 0.4 6.6e-05 22.7 0.4 1.9 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 ABA80218.1 - 0.0002 21.3 0.1 0.00064 19.7 0.1 1.9 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 ABA80218.1 - 0.00033 20.5 0.1 0.0011 18.9 0.1 2.0 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 ABA80218.1 - 0.00093 19.3 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 ABA80218.1 - 0.0012 19.1 0.1 0.0054 17.0 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.6 ABA80218.1 - 0.0013 18.6 0.0 0.016 15.1 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain RP-C PF03428.13 ABA80218.1 - 0.0013 18.4 0.6 0.24 11.0 0.0 2.6 2 1 0 2 2 2 1 Replication protein C N-terminal domain HTH_24 PF13412.6 ABA80218.1 - 0.0016 18.0 1.4 0.0026 17.3 0.2 2.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 ABA80218.1 - 0.003 18.0 0.0 0.01 16.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 ABA80218.1 - 0.0036 17.3 0.2 0.019 15.0 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 ABA80218.1 - 0.0099 15.7 0.2 0.024 14.4 0.2 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 ABA80218.1 - 0.032 14.2 0.3 0.098 12.7 0.1 2.0 2 0 0 2 2 1 0 Winged helix-turn helix HemN_C PF06969.16 ABA80218.1 - 0.041 13.9 0.1 0.29 11.2 0.0 2.3 2 0 0 2 2 2 0 HemN C-terminal domain TrmB PF01978.19 ABA80218.1 - 0.044 13.7 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 ABA80218.1 - 0.045 13.9 0.4 0.18 11.9 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 ABA80218.1 - 0.05 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 MarR family ATP-synt_B PF00430.18 ABA80219.2 - 1.7e-23 83.2 19.2 2.4e-23 82.7 19.2 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) Mt_ATP-synt_B PF05405.14 ABA80219.2 - 3.8e-12 46.1 0.7 4.8e-12 45.8 0.7 1.1 1 0 0 1 1 1 1 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) DUF3584 PF12128.8 ABA80219.2 - 0.028 12.0 8.7 0.031 11.8 8.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4533 PF15047.6 ABA80219.2 - 0.039 13.5 0.8 0.055 13.0 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4533) Rotamase_2 PF13145.6 ABA80219.2 - 0.4 11.5 8.8 0.61 10.9 8.8 1.3 1 0 0 1 1 1 0 PPIC-type PPIASE domain PIN_8 PF18476.1 ABA80219.2 - 0.71 9.7 6.5 0.87 9.4 6.5 1.1 1 0 0 1 1 1 0 PIN like domain Ubiq_cyt_C_chap PF03981.12 ABA80219.2 - 1.9 8.6 7.7 2.8 8.0 7.7 1.2 1 0 0 1 1 1 0 Ubiquinol-cytochrome C chaperone ABATE PF07336.11 ABA80219.2 - 3 8.5 21.7 12 6.5 21.7 1.9 1 1 0 1 1 1 0 Putative stress-induced transcription regulator ATP-synt_B PF00430.18 ABA80220.1 - 6.6e-18 65.1 20.1 9e-18 64.6 20.1 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) YMF19 PF02326.15 ABA80220.1 - 6.2e-08 33.3 0.0 1.7e-07 31.9 0.0 1.6 1 1 1 2 2 2 1 Plant ATP synthase F0 Fun_ATP-synt_8 PF05933.13 ABA80220.1 - 0.0066 16.6 0.3 0.0094 16.1 0.3 1.2 1 0 0 1 1 1 1 Fungal ATP synthase protein 8 (A6L) ATP-synt_8 PF00895.20 ABA80220.1 - 0.07 13.6 2.6 0.11 13.0 2.6 1.2 1 0 0 1 1 1 0 ATP synthase protein 8 V-ATPase_G PF03179.15 ABA80220.1 - 0.14 12.7 13.3 0.14 12.7 12.5 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Macoilin PF09726.9 ABA80220.1 - 6.5 5.2 8.1 8.6 4.8 8.1 1.1 1 0 0 1 1 1 0 Macoilin family ATP-synt_C PF00137.21 ABA80221.1 - 4.4e-10 39.7 13.3 5.4e-10 39.5 13.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit C ATP-synt_A PF00119.20 ABA80222.2 - 1.1e-57 195.4 23.7 1.4e-57 195.1 23.7 1.0 1 0 0 1 1 1 1 ATP synthase A chain ATPase_gene1 PF09527.10 ABA80223.1 - 6.1e-13 48.7 9.9 7.6e-13 48.4 9.9 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter LysE PF01810.18 ABA80223.1 - 0.012 15.0 0.5 0.014 14.8 0.5 1.2 1 0 0 1 1 1 0 LysE type translocator DUF2269 PF10027.9 ABA80223.1 - 0.016 15.2 0.4 0.02 15.0 0.4 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF3482 PF11981.8 ABA80223.1 - 0.024 14.0 0.8 0.031 13.7 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF3487 PF11990.8 ABA80223.1 - 0.049 13.5 0.5 0.063 13.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) HTH_20 PF12840.7 ABA80224.1 - 1.4e-16 60.3 0.2 2.1e-16 59.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 ABA80224.1 - 1.1e-11 44.4 0.0 1.5e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 ABA80224.1 - 1.9e-05 24.5 0.1 3e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 ABA80224.1 - 0.00044 19.8 0.0 0.00077 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 ABA80224.1 - 0.0012 18.5 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 ABA80224.1 - 0.0013 18.5 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 ABA80224.1 - 0.0081 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 ABA80224.1 - 0.019 14.7 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 ABA80224.1 - 0.025 14.9 0.0 0.039 14.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4_2 PF08281.12 ABA80224.1 - 0.037 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 ABA80224.1 - 0.062 13.3 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 ABA80224.1 - 0.068 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.19 ABA80224.1 - 0.089 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 ABA80224.1 - 0.091 13.2 0.0 0.1 13.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 ABA80224.1 - 0.098 13.2 0.0 0.13 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 ABA80224.1 - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_45 PF14947.6 ABA80224.1 - 0.19 11.7 0.0 0.29 11.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix AMP-binding PF00501.28 ABA80225.1 - 1.6e-92 310.3 0.0 2e-92 310.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA80225.1 - 1.9e-12 48.0 0.1 3.8e-12 47.0 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MipZ PF09140.11 ABA80226.1 - 1.8e-127 424.0 0.0 2.1e-127 423.9 0.0 1.0 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.6 ABA80226.1 - 1.9e-11 44.2 0.0 4.4e-07 30.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain ParA PF10609.9 ABA80226.1 - 1.4e-08 34.5 0.0 2.1e-08 34.0 0.0 1.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 ABA80226.1 - 2.2e-08 34.2 0.0 3.2e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 ABA80226.1 - 0.00074 19.4 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop LpxK PF02606.14 ABA80226.1 - 0.013 14.6 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase CBP_BcsQ PF06564.12 ABA80226.1 - 0.018 14.6 0.2 0.55 9.7 0.2 2.2 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 ABA80226.1 - 0.034 13.4 0.0 0.078 12.3 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein ATP_bind_1 PF03029.17 ABA80226.1 - 0.14 11.9 0.0 5.7 6.7 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Fer4_NifH PF00142.18 ABA80226.1 - 0.15 11.4 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 ABA80226.1 - 0.21 11.2 0.0 11 5.5 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Ribosomal_L31 PF01197.18 ABA80227.1 - 2.8e-25 88.3 0.0 3.1e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31 Ribosomal_L19 PF01245.20 ABA80228.1 - 1.2e-45 154.0 1.7 1.3e-45 153.9 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19 tRNA_m1G_MT PF01746.21 ABA80229.1 - 2.5e-53 180.7 0.0 2.9e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RimM PF01782.18 ABA80231.1 - 1.7e-15 57.0 0.0 3.1e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 RimM N-terminal domain PRC PF05239.16 ABA80231.1 - 3.6e-10 39.8 0.0 5.4e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 PRC-barrel domain Ribosomal_S16 PF00886.19 ABA80232.1 - 5.3e-26 90.5 0.0 9e-26 89.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S16 CM_2 PF01817.21 ABA80233.1 - 4.9e-16 58.9 0.5 6.2e-16 58.5 0.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF2683 PF10884.8 ABA80233.1 - 0.11 12.8 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) Acetyltransf_3 PF13302.7 ABA80234.1 - 1.2e-19 71.4 0.0 1.4e-19 71.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA80234.1 - 0.00015 22.0 0.0 0.0002 21.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 ABA80235.1 - 3.6e-21 76.3 0.6 4.2e-21 76.1 0.6 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA80235.1 - 0.00011 22.4 0.1 0.00014 22.1 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 ABA80236.1 - 2.3e-20 73.7 0.1 2.7e-20 73.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain SRP54 PF00448.22 ABA80237.1 - 1.4e-66 223.9 1.7 2.5e-66 223.1 1.7 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 ABA80237.1 - 1.3e-29 102.7 7.1 1.3e-29 102.7 7.1 2.6 3 0 0 3 3 1 1 Signal peptide binding domain SRP54_N PF02881.19 ABA80237.1 - 2.1e-20 72.7 0.3 7.2e-20 71.0 0.3 2.0 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 ABA80237.1 - 1.3e-10 41.4 0.0 4.3e-09 36.5 0.0 2.5 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 ABA80237.1 - 5.3e-05 22.6 0.1 0.00012 21.4 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_31 PF13614.6 ABA80237.1 - 5.5e-05 23.2 0.8 0.00029 20.8 0.1 2.4 2 1 1 3 3 3 1 AAA domain AAA_30 PF13604.6 ABA80237.1 - 0.00042 20.1 2.9 0.0011 18.7 1.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 ABA80237.1 - 0.00046 20.6 1.5 0.00066 20.1 0.1 1.9 3 0 0 3 3 1 1 AAA ATPase domain ATPase PF06745.13 ABA80237.1 - 0.0017 17.7 0.2 0.0049 16.2 0.0 1.8 2 0 0 2 2 2 1 KaiC AAA_33 PF13671.6 ABA80237.1 - 0.0024 18.0 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 ABA80237.1 - 0.0083 16.0 0.7 0.074 13.0 0.1 2.3 2 0 0 2 2 2 1 NACHT domain DnaB_C PF03796.15 ABA80237.1 - 0.0092 15.3 0.1 0.022 14.1 0.1 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain APS_kinase PF01583.20 ABA80237.1 - 0.011 15.6 0.3 0.033 14.1 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase ResIII PF04851.15 ABA80237.1 - 0.012 15.7 0.1 0.039 14.0 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.6 ABA80237.1 - 0.013 15.6 0.1 0.098 12.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 ABA80237.1 - 0.015 15.7 0.1 0.054 13.9 0.1 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 ABA80237.1 - 0.018 15.6 0.2 0.28 11.7 0.1 2.3 2 0 0 2 2 2 0 ABC transporter Phage_TAC_11 PF11836.8 ABA80237.1 - 0.018 15.2 0.3 3.6 7.8 0.0 3.3 2 0 0 2 2 2 0 Phage tail tube protein, GTA-gp10 Thymidylate_kin PF02223.17 ABA80237.1 - 0.02 14.6 0.1 0.058 13.1 0.1 1.7 1 0 0 1 1 1 0 Thymidylate kinase AAA_25 PF13481.6 ABA80237.1 - 0.025 14.2 1.3 0.051 13.1 0.5 1.9 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 ABA80237.1 - 0.026 15.1 0.1 0.065 13.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA80237.1 - 0.028 14.7 0.3 0.091 13.0 0.3 1.8 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 ABA80237.1 - 0.037 12.9 0.1 0.072 12.0 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ArsA_ATPase PF02374.15 ABA80237.1 - 0.045 12.9 0.1 0.045 12.9 0.1 3.8 4 1 1 5 5 5 0 Anion-transporting ATPase T6SS_VipA PF05591.12 ABA80237.1 - 0.047 13.5 1.2 1.2 8.9 0.1 2.7 2 0 0 2 2 2 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 AAA_19 PF13245.6 ABA80237.1 - 0.048 14.0 0.4 0.11 12.8 0.4 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 ABA80237.1 - 0.049 13.1 0.7 0.29 10.6 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_5 PF07728.14 ABA80237.1 - 0.049 13.6 0.7 0.15 12.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PAC4 PF16093.5 ABA80237.1 - 0.078 13.2 0.1 0.34 11.1 0.1 2.1 1 0 0 1 1 1 0 Proteasome assembly chaperone 4 MMR_HSR1 PF01926.23 ABA80237.1 - 0.12 12.5 0.3 0.86 9.7 0.3 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 ABA80237.1 - 0.14 11.8 0.0 0.38 10.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain 6PF2K PF01591.18 ABA80237.1 - 0.15 11.3 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase TetR_N PF00440.23 ABA80238.1 - 0.59 10.0 6.1 3.9 7.3 0.6 3.6 3 1 0 3 3 3 0 Bacterial regulatory proteins, tetR family LysR_substrate PF03466.20 ABA80239.2 - 4e-26 91.7 5.0 5.2e-26 91.3 5.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80239.2 - 7.5e-16 57.8 0.6 1.5e-15 56.8 0.6 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA80239.2 - 0.011 15.5 0.4 0.026 14.3 0.4 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_11 PF08279.12 ABA80239.2 - 0.022 14.7 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain HATPase_c PF02518.26 ABA80240.1 - 1.4e-17 64.2 0.0 2.2e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA80240.1 - 2.4e-07 30.7 0.0 7.6e-07 29.1 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 ABA80240.1 - 0.026 14.9 1.5 0.026 14.9 1.5 3.2 4 0 0 4 4 4 0 HAMP domain HATPase_c_5 PF14501.6 ABA80240.1 - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 GHKL domain Pyr_redox_2 PF07992.14 ABA80241.1 - 1.6e-51 175.3 2.3 2e-51 175.0 2.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 ABA80241.1 - 4.1e-22 78.5 0.1 9.9e-22 77.3 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 ABA80241.1 - 4.4e-16 59.2 5.8 8.6e-14 51.9 0.1 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA80241.1 - 5.3e-12 45.6 0.5 1.7e-08 34.1 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 ABA80241.1 - 5.8e-09 35.5 10.3 3.1e-06 26.5 6.1 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_7 PF13241.6 ABA80241.1 - 2.6e-05 24.6 0.9 0.0026 18.2 0.0 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.6 ABA80241.1 - 5.9e-05 23.6 0.7 0.17 12.4 0.0 2.6 2 0 0 2 2 2 2 XdhC Rossmann domain HI0933_like PF03486.14 ABA80241.1 - 7.6e-05 21.6 11.2 0.18 10.5 0.5 3.5 2 1 1 3 3 3 2 HI0933-like protein Lycopene_cycl PF05834.12 ABA80241.1 - 0.00011 21.4 13.0 0.33 9.9 3.6 3.2 2 1 1 3 3 3 3 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 ABA80241.1 - 0.00062 19.1 6.1 0.1 11.9 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain DFP PF04127.15 ABA80241.1 - 0.00086 19.2 2.8 0.35 10.7 0.0 2.5 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein FAD_oxidored PF12831.7 ABA80241.1 - 0.0013 18.2 15.1 0.0041 16.5 7.4 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA80241.1 - 0.0016 18.7 8.4 0.06 13.6 3.1 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 ABA80241.1 - 0.0055 16.0 1.4 0.024 13.9 0.6 2.1 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 ABA80241.1 - 0.013 14.7 0.2 0.06 12.5 0.0 1.9 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 ABA80241.1 - 0.14 12.1 4.4 3.6 7.4 1.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 ABA80241.1 - 0.69 9.4 22.1 1.4 8.4 6.0 3.7 2 2 2 4 4 4 0 FAD dependent oxidoreductase TrkA_N PF02254.18 ABA80241.1 - 1.1 9.6 5.0 2.2 8.6 0.3 2.8 2 1 0 2 2 2 0 TrkA-N domain FAD_binding_2 PF00890.24 ABA80241.1 - 1.1 8.3 18.4 0.17 10.9 6.5 3.1 2 1 1 3 3 3 0 FAD binding domain FAD_binding_3 PF01494.19 ABA80241.1 - 1.3 8.2 11.4 4.8 6.3 3.4 2.5 2 1 0 2 2 2 0 FAD binding domain SNARE_assoc PF09335.11 ABA80242.1 - 7.2e-21 74.9 9.8 7.2e-21 74.9 9.8 2.0 1 1 1 2 2 2 1 SNARE associated Golgi protein Ribosomal_L34 PF00468.17 ABA80243.1 - 5e-24 84.0 8.7 5.4e-24 83.9 8.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 FAF PF11250.8 ABA80243.1 - 0.061 13.6 1.6 0.18 12.1 1.6 1.9 1 1 0 1 1 1 0 Fantastic Four meristem regulator Ribonuclease_P PF00825.18 ABA80244.1 - 4.5e-21 75.0 0.1 5.5e-21 74.7 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease P YidD PF01809.18 ABA80245.1 - 2.1e-27 94.8 0.1 2.4e-27 94.6 0.1 1.0 1 0 0 1 1 1 1 Putative membrane protein insertion efficiency factor ATP_bind_3 PF01171.20 ABA80246.1 - 7e-14 52.0 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family EAL PF00563.20 ABA80247.1 - 6e-62 209.3 0.0 9.3e-62 208.6 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 ABA80247.1 - 1.2e-15 57.7 0.0 2e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain YidC_periplas PF14849.6 ABA80248.1 - 2.5e-85 286.8 0.3 3.2e-85 286.5 0.3 1.1 1 0 0 1 1 1 1 YidC periplasmic domain 60KD_IMP PF02096.20 ABA80248.1 - 9e-59 198.1 5.5 1.4e-58 197.5 5.5 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein MOSC PF03473.17 ABA80249.1 - 8.5e-13 48.5 0.0 1.5e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.16 ABA80249.1 - 1.8e-09 37.5 0.0 4.3e-09 36.3 0.0 1.6 2 0 0 2 2 2 1 MOSC N-terminal beta barrel domain CobW_C PF07683.14 ABA80249.1 - 0.091 12.7 0.1 1.3 9.0 0.0 2.3 2 0 0 2 2 2 0 Cobalamin synthesis protein cobW C-terminal domain MMR_HSR1 PF01926.23 ABA80250.1 - 1.1e-20 73.8 0.0 1.5e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 ABA80250.1 - 7.8e-09 35.7 0.0 8.7e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 ABA80250.1 - 3.5e-07 29.9 0.0 5.4e-07 29.3 0.0 1.6 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 ABA80250.1 - 3.9e-07 29.8 0.1 1.9e-05 24.3 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 ABA80250.1 - 0.00011 22.3 0.4 0.0012 18.9 0.1 2.2 1 1 1 2 2 2 1 Dynamin family Septin PF00735.18 ABA80250.1 - 0.0051 16.1 0.1 1.4 8.1 0.0 2.2 2 1 0 2 2 2 2 Septin CM_2 PF01817.21 ABA80250.1 - 0.066 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Chorismate mutase type II YcgL PF05166.13 ABA80250.1 - 0.083 13.3 0.1 0.26 11.7 0.0 1.7 2 0 0 2 2 2 0 YcgL domain Roc PF08477.13 ABA80250.1 - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 ABA80250.1 - 0.12 11.8 0.0 0.27 10.7 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 ABA80250.1 - 0.16 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain adh_short_C2 PF13561.6 ABA80251.2 - 8.7e-49 166.2 0.0 1.1e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80251.2 - 2.5e-43 147.8 0.0 3.2e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 ABA80251.2 - 0.00081 18.9 0.0 0.0099 15.4 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 ABA80251.2 - 0.0025 17.7 0.1 0.011 15.7 0.1 1.9 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 ABA80251.2 - 0.13 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain AA_kinase PF00696.28 ABA80252.1 - 3.7e-46 157.7 6.1 4.3e-46 157.5 6.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Fer4_6 PF12837.7 ABA80253.1 - 0.022 14.8 4.0 0.022 14.8 4.0 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain His_Phos_1 PF00300.22 ABA80254.1 - 1.6e-09 37.7 0.0 3.4e-09 36.7 0.0 1.5 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) MoaE PF02391.17 ABA80255.1 - 3.3e-32 111.1 0.3 3.9e-32 110.9 0.3 1.1 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 ABA80256.1 - 8.7e-16 58.3 0.0 9.6e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family CDP-OH_P_transf PF01066.21 ABA80257.1 - 5.9e-17 62.2 0.5 5.9e-17 62.2 0.5 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase FeS PF04060.13 ABA80257.1 - 0.093 12.4 2.0 2.9 7.6 0.4 2.3 1 1 1 2 2 2 0 Putative Fe-S cluster DUF202 PF02656.15 ABA80257.1 - 2.6 8.6 12.2 4 7.9 5.4 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) UvrC_HhH_N PF08459.11 ABA80258.1 - 7.8e-52 175.3 0.0 1.4e-51 174.4 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 ABA80258.1 - 9e-10 38.7 0.0 2e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_2 PF12826.7 ABA80258.1 - 1.1e-09 38.2 0.0 2.5e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 ABA80258.1 - 4.2e-09 35.8 4.5 1.1e-08 34.6 4.5 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_5 PF14520.6 ABA80258.1 - 5.1e-07 30.2 0.0 1.7e-06 28.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 ABA80258.1 - 5.8e-06 25.9 0.1 0.0016 18.2 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 ABA80258.1 - 0.044 14.1 0.0 7.2 7.2 0.0 2.6 2 0 0 2 2 2 0 IMS family HHH motif adh_short_C2 PF13561.6 ABA80259.2 - 1.5e-33 116.3 0.1 1.9e-33 116.0 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80259.2 - 4.5e-31 107.8 0.0 6e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA80259.2 - 4.4e-09 36.5 0.2 7.5e-09 35.7 0.2 1.3 1 0 0 1 1 1 1 KR domain Peptidase_S49 PF01343.18 ABA80260.1 - 3.3e-27 95.3 0.0 4.5e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 ABA80260.1 - 0.00025 20.2 0.0 0.00035 19.7 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 ABA80260.1 - 0.0015 18.5 0.0 0.35 10.7 0.0 2.1 2 0 0 2 2 2 2 Clp protease LysR_substrate PF03466.20 ABA80261.1 - 6.2e-32 110.7 2.0 9.2e-32 110.1 2.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80261.1 - 1e-17 63.8 0.2 2.2e-17 62.8 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 ABA80261.1 - 0.066 13.3 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain 2Fe-2S_thioredx PF01257.19 ABA80262.1 - 1.6e-41 141.5 0.0 1.8e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin HTH_AsnC-type PF13404.6 ABA80262.1 - 0.006 16.4 0.1 0.12 12.3 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain B12-binding_2 PF02607.17 ABA80262.1 - 0.02 15.3 1.4 0.068 13.6 0.2 2.1 2 0 0 2 2 2 0 B12 binding domain HTH_IclR PF09339.10 ABA80262.1 - 0.13 12.1 0.4 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Complex1_51K PF01512.17 ABA80263.1 - 2.5e-45 154.1 0.1 5.4e-45 153.0 0.0 1.6 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 ABA80263.1 - 2.6e-28 97.9 0.3 4.9e-28 97.0 0.3 1.4 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 ABA80263.1 - 0.0012 18.7 0.8 0.0035 17.2 0.8 1.7 1 0 0 1 1 1 1 SLBB domain Molybdopterin PF00384.22 ABA80264.1 - 1.5e-71 241.6 0.0 1.9e-71 241.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 ABA80264.1 - 1.4e-26 92.6 0.2 3.4e-26 91.5 0.2 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 ABA80264.1 - 9.1e-25 86.5 0.6 2.4e-24 85.2 0.6 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 ABA80264.1 - 6.1e-17 60.9 0.2 6.1e-17 60.9 0.2 3.3 4 0 0 4 4 3 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 ABA80264.1 - 3.7e-14 52.5 1.6 9.4e-14 51.1 1.6 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.7 ABA80264.1 - 1.2e-10 41.8 8.7 1.4e-05 25.6 10.3 4.4 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 ABA80264.1 - 1.4e-07 31.0 18.2 1.4e-05 24.6 0.9 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 ABA80264.1 - 4.5e-06 26.7 8.9 4.5e-06 26.7 8.9 3.8 2 1 2 5 5 4 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 ABA80264.1 - 6.6e-06 26.2 7.9 6.6e-06 26.2 7.9 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA80264.1 - 1.5e-05 24.8 9.6 9.4e-05 22.3 1.5 4.3 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 ABA80264.1 - 0.00014 21.9 20.2 0.0023 18.0 5.8 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80264.1 - 0.00037 20.9 7.2 0.00037 20.9 7.2 3.6 3 2 0 3 3 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 ABA80264.1 - 0.0027 17.9 8.9 0.2 11.9 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA80264.1 - 0.0036 17.3 3.9 0.0036 17.3 3.9 4.1 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 ABA80264.1 - 0.0038 18.1 3.8 0.0038 18.1 3.8 3.5 3 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 ABA80264.1 - 0.016 15.7 14.9 0.071 13.7 1.8 3.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 ABA80264.1 - 0.033 15.0 12.3 0.48 11.3 0.1 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA80264.1 - 0.044 14.3 17.0 0.064 13.8 0.3 3.8 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 ABA80264.1 - 0.45 11.3 13.8 0.63 10.8 1.4 3.2 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 ABA80264.1 - 7.8 7.1 15.7 16 6.1 5.3 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I FdhD-NarQ PF02634.15 ABA80265.1 - 9.9e-71 238.2 0.0 1.1e-70 238.0 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family PriCT_1 PF08708.11 ABA80265.1 - 0.15 11.8 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) FdsD PF11390.8 ABA80266.1 - 1.3e-27 95.8 0.0 1.5e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 NADH-dependant formate dehydrogenase delta subunit FdsD Glyco_trans_1_4 PF13692.6 ABA80268.1 - 1.4e-31 109.7 0.4 2.2e-31 109.1 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 ABA80268.1 - 5.5e-31 107.4 0.0 7.9e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 ABA80268.1 - 2.7e-08 34.1 0.0 9.2e-08 32.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA80268.1 - 7.7e-08 32.5 6.4 1e-06 28.8 6.4 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Trans_reg_C PF00486.28 ABA80269.1 - 4.6e-22 77.9 0.0 9e-22 77.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 ABA80269.1 - 2.2e-19 69.7 0.0 3.9e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PLC-beta_C PF08703.10 ABA80270.2 - 0.13 12.2 0.0 0.18 11.7 0.0 1.1 1 0 0 1 1 1 0 PLC-beta C terminal WGR PF05406.15 ABA80271.1 - 2.1e-09 37.3 0.0 2.4e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 WGR domain AlaDh_PNT_N PF05222.15 ABA80272.1 - 2.9e-25 89.1 0.0 3.9e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain AlaDh_PNT_C PF01262.21 ABA80272.1 - 0.00013 21.4 0.0 0.41 9.9 0.2 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 ABA80273.1 - 2.5e-41 141.3 0.2 3.9e-41 140.7 0.1 1.3 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA80273.1 - 1.1e-29 103.6 0.1 1.3e-29 103.4 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA80273.1 - 3.1e-11 43.5 0.4 4.9e-11 42.9 0.4 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 ABA80273.1 - 3.9e-07 30.1 0.1 4.9e-07 29.8 0.1 1.1 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 ABA80273.1 - 0.066 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain DUF3833 PF12915.7 ABA80274.1 - 1.5e-47 161.2 0.0 1.8e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3833) MFS_2 PF13347.6 ABA80275.1 - 5.2e-44 150.5 23.8 1.2e-43 149.3 23.8 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 ABA80275.1 - 0.00038 19.5 61.2 0.0012 17.9 57.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 ABA80275.1 - 0.058 12.2 4.1 0.071 12.0 0.3 2.5 2 2 0 2 2 2 0 MFS_1 like family DUF1700 PF08006.11 ABA80275.1 - 6.6 6.2 6.2 29 4.1 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) DUF1365 PF07103.11 ABA80276.1 - 7.5e-60 202.6 0.0 8.4e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1365) Amino_oxidase PF01593.24 ABA80277.1 - 6.9e-20 71.8 0.1 7.9e-20 71.6 0.1 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 ABA80277.1 - 5e-16 58.7 0.1 1.6e-15 57.1 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 ABA80277.1 - 2.6e-09 36.3 0.9 0.00032 19.5 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 ABA80277.1 - 4.1e-09 36.5 8.9 6.2e-08 32.6 8.8 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA80277.1 - 3.3e-06 26.6 0.9 0.016 14.5 0.3 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA80277.1 - 0.00038 21.0 0.7 1.6 9.3 0.8 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA80277.1 - 0.0006 19.2 0.0 0.95 8.6 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA80277.1 - 0.0023 17.4 0.5 0.0041 16.5 0.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 ABA80277.1 - 0.0045 17.0 2.6 1.8 8.5 0.4 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.17 ABA80277.1 - 0.013 14.8 0.1 0.022 14.0 0.1 1.3 1 0 0 1 1 1 0 Thi4 family FAD_binding_2 PF00890.24 ABA80277.1 - 0.013 14.6 4.7 0.015 14.4 3.2 1.8 2 0 0 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.21 ABA80277.1 - 0.13 11.5 0.1 0.24 10.7 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 ABA80277.1 - 0.58 9.2 1.4 0.8 8.7 1.4 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Sigma70_r2 PF04542.14 ABA80278.1 - 2.7e-15 55.9 0.1 2.7e-15 55.9 0.1 2.5 3 0 0 3 3 3 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 ABA80278.1 - 1.3e-12 47.1 0.7 1.9e-12 46.5 0.7 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 ABA80278.1 - 2.3e-12 46.4 0.6 5e-12 45.3 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 ABA80278.1 - 0.001 18.6 0.0 0.0021 17.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Polysacc_deac_2 PF04748.13 ABA80278.1 - 0.011 14.9 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase Sigma70_ECF PF07638.11 ABA80278.1 - 0.013 15.4 0.1 0.021 14.7 0.0 1.5 2 0 0 2 2 2 0 ECF sigma factor HTH_IclR PF09339.10 ABA80278.1 - 0.05 13.4 0.3 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain Cupin_7 PF12973.7 ABA80279.1 - 2.4e-13 49.8 0.0 3.3e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain zf-HC2 PF13490.6 ABA80279.1 - 6.7e-05 23.1 0.5 0.00016 21.8 0.5 1.7 1 0 0 1 1 1 1 Putative zinc-finger Cupin_2 PF07883.11 ABA80279.1 - 0.0042 16.8 0.0 0.01 15.5 0.0 1.7 1 0 0 1 1 1 1 Cupin domain RmuC PF02646.16 ABA80280.1 - 1.1e-56 192.1 0.0 1.6e-56 191.6 0.0 1.2 1 0 0 1 1 1 1 RmuC family DUF948 PF06103.11 ABA80280.1 - 0.0025 18.0 0.2 8.9 6.6 0.0 3.2 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF948) DUF1843 PF08898.10 ABA80280.1 - 0.013 16.0 0.3 1.2 9.7 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) CK2S PF15011.6 ABA80280.1 - 0.028 14.3 3.4 6.7 6.6 0.1 3.1 2 1 1 3 3 3 0 Casein Kinase 2 substrate DUF745 PF05335.13 ABA80280.1 - 0.091 12.5 0.2 0.091 12.5 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF745) CENP-F_leu_zip PF10473.9 ABA80280.1 - 0.47 10.5 3.9 0.95 9.5 0.0 2.8 3 1 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MbeD_MobD PF04899.12 ABA80280.1 - 0.95 9.6 4.4 22 5.3 0.0 3.3 4 0 0 4 4 4 0 MbeD/MobD like LPP PF04728.13 ABA80280.1 - 2.4 8.6 0.0 2.4 8.6 0.0 3.8 5 0 0 5 5 5 0 Lipoprotein leucine-zipper MutL_C PF08676.11 ABA80281.2 - 1.4e-49 167.6 0.0 2.5e-49 166.8 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 ABA80281.2 - 2.5e-34 117.5 0.0 3.7e-34 116.9 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 ABA80281.2 - 1.6e-08 34.4 0.0 2.7e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 ABA80281.2 - 2.5e-06 28.0 0.0 4.2e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peptidase_M16_C PF05193.21 ABA80282.1 - 7.3e-27 94.6 0.0 3.2e-25 89.2 0.0 2.6 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 ABA80282.1 - 0.026 14.5 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Insulinase (Peptidase family M16) Peptidase_M16 PF00675.20 ABA80283.2 - 5.8e-29 101.0 0.0 1e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 ABA80283.2 - 3.4e-23 82.6 0.0 6.4e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain DUF3035 PF11233.8 ABA80284.1 - 2e-42 144.8 0.1 2.3e-42 144.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3035) Peptidase_A8 PF01252.18 ABA80285.1 - 3e-30 105.3 3.3 3.6e-30 105.1 3.3 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II DUF4791 PF16039.5 ABA80285.1 - 0.084 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4791) AICARFT_IMPCHas PF01808.18 ABA80286.1 - 7.7e-120 399.8 1.1 1e-119 399.4 1.1 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 ABA80286.1 - 6.2e-26 90.4 0.0 1e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 MGS-like domain DRTGG PF07085.12 ABA80286.1 - 0.086 12.6 0.2 0.46 10.3 0.1 2.4 2 1 0 2 2 2 0 DRTGG domain CoA_binding_2 PF13380.6 ABA80286.1 - 0.17 12.3 0.7 13 6.3 0.0 3.0 3 0 0 3 3 3 0 CoA binding domain Hepar_II_III PF07940.13 ABA80287.1 - 2.8e-59 200.6 2.0 5.7e-59 199.6 2.0 1.5 1 0 0 1 1 1 1 Heparinase II/III-like protein DUF982 PF06169.12 ABA80287.1 - 0.011 15.7 0.2 0.039 14.0 0.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF982) Methyltr_RsmB-F PF01189.17 ABA80288.2 - 2.4e-41 141.6 0.0 3.8e-41 141.0 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 ABA80288.2 - 5.3e-14 52.6 0.0 7.4e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 NusB family Methyltransf_25 PF13649.6 ABA80288.2 - 4.1e-07 30.6 0.1 1.4e-06 28.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA80288.2 - 1e-06 28.7 0.0 1.6e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA80288.2 - 6.4e-06 25.8 0.1 6.2e-05 22.6 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 ABA80288.2 - 0.00015 22.0 0.0 0.00027 21.1 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase ADH_zinc_N PF00107.26 ABA80288.2 - 0.004 17.1 0.0 3.1 7.8 0.0 2.6 2 0 0 2 2 2 2 Zinc-binding dehydrogenase Methyltransf_11 PF08241.12 ABA80288.2 - 0.0048 17.5 0.0 0.038 14.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 ABA80288.2 - 0.061 12.9 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 ABA80288.2 - 0.095 13.5 0.0 1.3 9.8 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 ABA80288.2 - 0.1 12.4 0.0 0.42 10.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain DUF1674 PF07896.12 ABA80289.1 - 2.5e-14 53.5 2.5 3.5e-14 53.0 2.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1674) LRV PF01816.17 ABA80289.1 - 0.017 15.5 0.5 0.043 14.2 0.5 1.7 1 0 0 1 1 1 0 Leucine rich repeat variant DapB_C PF05173.14 ABA80290.1 - 1e-40 138.5 0.0 1.5e-40 138.0 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 ABA80290.1 - 1.2e-31 109.4 1.2 5.4e-31 107.3 0.4 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 ABA80290.1 - 0.038 13.5 0.3 0.065 12.7 0.3 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.24 ABA80290.1 - 0.092 13.2 1.2 0.93 9.9 0.5 2.5 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain RBFA PF02033.18 ABA80291.1 - 4.5e-24 84.9 0.0 5.2e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome-binding factor A NAGPA PF09992.9 ABA80292.1 - 3.6e-16 59.8 0.0 4.6e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Phosphodiester glycosidase TruB_N PF01509.18 ABA80293.1 - 1.9e-48 164.6 0.0 2.4e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 ABA80293.1 - 1.1e-12 47.9 0.0 2e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PALP PF00291.25 ABA80294.1 - 4.5e-61 206.8 1.3 5.4e-61 206.6 1.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1643 PF07799.12 ABA80295.1 - 2.1e-45 154.2 0.0 2.4e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1643) Ribosomal_S15 PF00312.22 ABA80296.1 - 4.9e-37 126.0 1.1 5.6e-37 125.8 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 RNase_PH PF01138.21 ABA80297.1 - 3.3e-43 147.3 0.0 1.5e-21 77.2 0.0 2.3 2 0 0 2 2 2 2 3' exoribonuclease family, domain 1 S1 PF00575.23 ABA80297.1 - 2.8e-19 69.2 0.8 5.7e-19 68.2 0.8 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNase_PH_C PF03725.15 ABA80297.1 - 3.1e-18 65.6 1.0 4.4e-08 33.0 0.0 2.9 3 0 0 3 3 3 2 3' exoribonuclease family, domain 2 PNPase PF03726.14 ABA80297.1 - 5.4e-15 55.7 0.9 1.6e-14 54.2 0.6 2.0 2 0 0 2 2 2 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain KH_1 PF00013.29 ABA80297.1 - 7.4e-12 44.9 0.7 2.6e-11 43.2 0.7 2.0 1 0 0 1 1 1 1 KH domain BioW PF03744.13 ABA80297.1 - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 6-carboxyhexanoate--CoA ligase HemolysinCabind PF00353.19 ABA80298.1 - 2.5e-60 199.9 161.3 7.4e-10 38.6 12.9 8.8 5 3 4 10 10 10 9 RTX calcium-binding nonapeptide repeat (4 copies) HemolysinCabind PF00353.19 ABA80299.1 - 2.2e-82 270.4 294.3 4.2e-10 39.4 15.4 7.0 1 1 11 12 12 12 12 RTX calcium-binding nonapeptide repeat (4 copies) Glycos_transf_1 PF00534.20 ABA80301.1 - 6.3e-22 77.9 0.0 1.2e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA80301.1 - 6.7e-22 78.4 0.1 1.7e-20 73.8 0.1 2.6 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA80301.1 - 4.5e-18 65.8 1.6 2e-17 63.7 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 ABA80301.1 - 1e-14 55.3 3.8 1e-14 55.3 3.8 2.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 ABA80301.1 - 1.7e-05 25.1 0.0 4.7e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 ABA80303.1 - 8.8e-24 84.0 0.0 4e-23 81.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA80303.1 - 1.2e-20 74.3 0.0 5.5e-20 72.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA80303.1 - 9.8e-13 48.5 0.2 1.3e-11 44.8 0.1 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 ABA80303.1 - 1.2e-11 45.3 0.2 1.2e-11 45.3 0.2 2.2 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 ABA80303.1 - 0.00065 20.0 0.0 0.0021 18.4 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 ABC_tran PF00005.27 ABA80304.1 - 2.8e-30 105.6 0.0 4.4e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 ABA80304.1 - 1.7e-07 31.2 5.3 1.9e-06 27.8 5.3 2.0 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 ABA80304.1 - 0.00017 21.1 0.0 0.0015 18.1 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA80304.1 - 0.0056 16.5 0.6 1.4 8.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA80304.1 - 0.0073 16.7 5.7 0.015 15.7 0.4 2.8 3 1 0 3 3 3 1 AAA ATPase domain AAA_29 PF13555.6 ABA80304.1 - 0.033 13.9 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 ABA80304.1 - 0.06 13.6 0.3 0.48 10.7 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 ABA80304.1 - 0.51 10.5 3.9 0.57 10.3 0.2 2.7 3 0 0 3 3 3 0 AAA domain HlyD_3 PF13437.6 ABA80305.1 - 1.1e-17 64.6 1.0 1.9e-15 57.5 0.2 2.8 2 1 1 3 3 3 1 HlyD family secretion protein HlyD_D23 PF16576.5 ABA80305.1 - 3.6e-14 52.5 2.6 1.5e-11 44.0 0.6 2.6 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD PF00529.20 ABA80305.1 - 0.002 18.0 6.1 0.0022 17.8 5.0 1.9 2 1 0 2 2 2 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl_2 PF13533.6 ABA80305.1 - 0.0025 17.6 1.0 0.04 13.7 0.1 2.9 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 ABA80305.1 - 0.0067 16.2 0.2 0.51 10.2 0.0 2.5 2 0 0 2 2 2 1 Biotin-requiring enzyme Peptidase_M23 PF01551.22 ABA80305.1 - 0.1 12.8 0.0 0.59 10.4 0.0 2.2 2 1 0 2 2 2 0 Peptidase family M23 Hexapep PF00132.24 ABA80306.1 - 3.1e-10 39.4 9.0 6.6e-07 28.8 2.5 2.7 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA80306.1 - 0.0022 17.7 0.5 0.0022 17.7 0.5 2.4 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase DNA_pol3_alpha PF07733.12 ABA80308.2 - 6.8e-75 252.0 0.0 1.1e-74 251.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 ABA80308.2 - 1.3e-59 200.2 0.0 1.9e-59 199.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain HHH_6 PF14579.6 ABA80308.2 - 1.2e-20 73.5 0.0 2.9e-20 72.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif PHP PF02811.19 ABA80308.2 - 3.1e-06 27.6 0.0 1.6e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 PHP domain MarR_2 PF12802.7 ABA80308.2 - 0.17 11.8 3.4 1.6 8.6 0.1 4.0 4 0 0 4 4 4 0 MarR family SLT_2 PF13406.6 ABA80309.1 - 5.4e-109 363.9 0.0 6.6e-109 363.6 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain PG_binding_1 PF01471.18 ABA80309.1 - 2.6e-11 43.5 0.1 5.7e-11 42.5 0.1 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA80309.1 - 0.00055 20.1 0.1 0.0018 18.5 0.1 1.8 1 0 0 1 1 1 1 Predicted Peptidoglycan domain PG_binding_2 PF08823.11 ABA80309.1 - 0.0083 16.4 0.0 0.029 14.7 0.0 1.9 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Glucosaminidase PF01832.20 ABA80309.1 - 0.029 14.8 0.0 0.051 14.1 0.0 1.5 1 0 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RNB PF00773.19 ABA80310.1 - 2.5e-91 306.4 0.0 3.3e-91 306.0 0.0 1.1 1 0 0 1 1 1 1 RNB domain CSD2 PF17876.1 ABA80310.1 - 3.4e-09 36.7 0.0 4.9e-07 29.8 0.0 2.7 2 0 0 2 2 2 1 Cold shock domain S1 PF00575.23 ABA80310.1 - 2e-08 34.5 0.0 4.3e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain RNase_II_C_S1 PF18614.1 ABA80310.1 - 0.02 14.8 0.5 3.4 7.7 0.1 2.9 2 0 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain Acetyltransf_10 PF13673.7 ABA80311.1 - 6.6e-22 77.8 0.0 7.5e-22 77.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA80311.1 - 4.6e-12 46.2 0.1 5.5e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA80311.1 - 7.1e-12 45.6 0.1 8.4e-12 45.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_5 PF13444.6 ABA80311.1 - 1e-06 29.3 0.1 5.5e-06 27.0 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA80311.1 - 3.9e-06 27.0 0.0 3.1e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA80311.1 - 9.8e-06 25.5 0.2 1.9e-05 24.5 0.2 1.5 1 1 0 1 1 1 1 FR47-like protein PanZ PF12568.8 ABA80311.1 - 0.013 15.2 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 ABA80311.1 - 0.072 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 ABA80311.1 - 0.12 12.5 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M20 PF01546.28 ABA80312.1 - 8.7e-40 136.6 0.4 1.2e-39 136.2 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA80312.1 - 2e-21 75.9 0.1 3.2e-21 75.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 ABA80312.1 - 0.0045 16.7 0.1 0.01 15.5 0.1 1.6 2 0 0 2 2 2 1 Peptidase family M28 Bac_luciferase PF00296.20 ABA80313.2 - 0.012 15.0 0.1 0.012 15.0 0.1 1.0 1 0 0 1 1 1 0 Luciferase-like monooxygenase DUF421 PF04239.12 ABA80314.1 - 3e-12 46.2 0.0 4.2e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF421) Zn-ribbon_8 PF09723.10 ABA80314.1 - 0.17 12.0 4.8 0.32 11.2 4.8 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 ABA80314.1 - 2.7 8.0 7.2 0.2 11.6 1.0 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type THDPS_N_2 PF14805.6 ABA80315.1 - 1.1e-24 86.4 2.8 1.9e-24 85.6 2.8 1.4 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 ABA80315.1 - 4.4e-12 45.2 10.6 5.4e-06 25.9 0.9 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA80315.1 - 4.7e-11 42.2 1.5 4.7e-11 42.2 1.5 3.0 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Lysine_decarbox PF03641.14 ABA80316.2 - 3.2e-33 114.6 0.0 1.7e-32 112.3 0.0 1.9 2 0 0 2 2 2 1 Possible lysine decarboxylase LDcluster4 PF18306.1 ABA80316.2 - 6.6e-10 38.8 0.0 9.3e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 SLOG cluster4 family AA_kinase PF00696.28 ABA80316.2 - 0.081 12.5 0.0 0.22 11.1 0.0 1.6 1 1 0 2 2 2 0 Amino acid kinase family DUF2794 PF10984.8 ABA80317.1 - 1.2e-40 137.5 0.1 1.4e-40 137.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2794) PBECR1 PF18809.1 ABA80317.1 - 0.21 12.3 0.0 0.24 12.1 0.0 1.2 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 DXP_synthase_N PF13292.6 ABA80318.1 - 2e-115 384.7 0.0 4.3e-115 383.6 0.0 1.5 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 ABA80318.1 - 2.6e-35 121.7 0.2 4.9e-35 120.8 0.2 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 ABA80318.1 - 3.2e-29 101.3 0.0 6.8e-29 100.3 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 ABA80318.1 - 0.00027 20.0 0.0 0.00048 19.2 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.21 ABA80318.1 - 0.00033 19.7 0.9 0.078 11.9 0.9 2.9 2 1 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 ABA80318.1 - 0.00061 19.6 0.3 0.0023 17.7 0.5 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain polyprenyl_synt PF00348.17 ABA80319.1 - 4.5e-51 173.4 0.1 5.7e-51 173.0 0.1 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Exonuc_VII_S PF02609.16 ABA80320.1 - 1e-20 73.5 0.7 1.4e-20 73.1 0.7 1.2 1 0 0 1 1 1 1 Exonuclease VII small subunit TACC_C PF05010.14 ABA80320.1 - 0.12 12.2 1.1 0.16 11.7 0.4 1.5 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Hist_deacetyl PF00850.19 ABA80321.1 - 6.4e-80 268.9 0.0 8.7e-80 268.5 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Response_reg PF00072.24 ABA80322.1 - 6.1e-28 97.2 0.0 8.9e-28 96.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA80322.1 - 4.7e-23 81.1 0.2 1.2e-22 79.8 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal MarR_2 PF12802.7 ABA80323.1 - 1.1e-10 41.2 0.1 2e-10 40.4 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 ABA80323.1 - 5.5e-07 29.4 0.1 9.2e-07 28.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 ABA80323.1 - 2.3e-05 24.8 0.1 3.8e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 ABA80323.1 - 0.00016 21.8 0.5 0.0002 21.5 0.5 1.3 1 0 0 1 1 1 1 Replication-relaxation HTH_20 PF12840.7 ABA80323.1 - 0.00054 20.0 0.0 0.0046 17.0 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA80323.1 - 0.0006 19.7 0.2 0.0013 18.7 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 ABA80323.1 - 0.0045 16.5 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 ABA80323.1 - 0.012 15.5 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 ABA80323.1 - 0.015 14.9 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 ABA80323.1 - 0.036 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 ABA80323.1 - 0.06 13.7 0.6 0.11 12.9 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_34 PF13601.6 ABA80323.1 - 0.064 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.17 ABA80323.1 - 0.074 12.9 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.14 ABA80323.1 - 0.087 12.8 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 ABA80323.1 - 0.15 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Aminotran_4 PF01063.19 ABA80324.1 - 1.3e-43 149.4 0.0 1.5e-43 149.2 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DUF1294 PF06961.13 ABA80326.1 - 6.1e-22 77.6 0.3 1.3e-21 76.6 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) ThrE PF06738.12 ABA80326.1 - 0.21 10.9 1.8 0.78 9.1 1.2 1.9 1 1 1 2 2 2 0 Putative threonine/serine exporter DUF1730 PF08331.10 ABA80327.1 - 3.7e-21 74.8 0.0 6.8e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1730) Fer4_16 PF13484.6 ABA80327.1 - 2.3e-19 70.1 3.1 6.9e-19 68.6 3.5 1.6 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 ABA80327.1 - 2.6e-07 31.1 4.6 6e-07 30.0 4.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA80327.1 - 7.8e-06 26.0 1.8 0.005 17.0 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA80327.1 - 2.7e-05 24.0 7.7 0.022 14.8 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 ABA80327.1 - 3.9e-05 23.7 4.3 0.039 14.1 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 ABA80327.1 - 0.00046 19.9 10.1 0.0012 18.6 2.3 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 ABA80327.1 - 0.001 19.0 12.7 0.015 15.4 4.7 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_3 PF12798.7 ABA80327.1 - 0.0038 18.1 10.9 0.25 12.4 4.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain HEAT_2 PF13646.6 ABA80327.1 - 0.025 15.0 0.8 0.077 13.4 0.8 1.8 1 0 0 1 1 1 0 HEAT repeats Fer4_4 PF12800.7 ABA80327.1 - 0.12 13.0 8.4 4 8.2 3.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 ABA80327.1 - 0.15 12.6 6.5 0.45 11.1 6.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80327.1 - 0.87 10.1 10.2 17 5.9 11.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 ABA80327.1 - 1.5 9.0 9.9 59 3.9 9.9 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 ABA80327.1 - 2.7 8.2 4.5 4.7 7.4 1.0 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain GST_N_3 PF13417.6 ABA80328.2 - 6.5e-23 80.9 0.0 1.5e-22 79.8 0.1 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 ABA80328.2 - 4e-16 59.1 0.0 8.1e-16 58.1 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 ABA80328.2 - 3.3e-15 56.2 0.0 7.5e-15 55.0 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 ABA80328.2 - 2.1e-07 31.0 0.1 3.7e-07 30.2 0.1 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 ABA80328.2 - 0.001 19.1 0.6 0.0019 18.2 0.6 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 ABA80328.2 - 0.0018 18.5 0.1 0.0067 16.6 0.1 2.0 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_4 PF17172.4 ABA80328.2 - 0.0068 17.1 0.0 0.014 16.1 0.0 1.6 1 1 0 1 1 1 1 Glutathione S-transferase N-terminal domain Transgly PF00912.22 ABA80329.1 - 1e-42 145.6 0.0 1.4e-42 145.1 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase DUF2890 PF11081.8 ABA80329.1 - 0.002 18.3 0.4 0.0033 17.6 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2890) GATase_2 PF00310.21 ABA80330.1 - 3.6e-158 526.7 0.0 4.6e-158 526.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 ABA80330.1 - 1e-152 508.6 0.4 3.2e-152 506.9 0.2 1.8 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 ABA80330.1 - 6.2e-94 314.6 0.0 1.4e-93 313.5 0.0 1.6 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 ABA80330.1 - 7.9e-71 237.6 5.1 1.4e-70 236.8 5.1 1.4 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.18 ABA80330.1 - 0.00023 20.3 4.2 0.00025 20.2 2.7 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase GFA PF04828.14 ABA80331.1 - 2.4e-17 63.0 0.3 3.4e-17 62.6 0.3 1.2 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme Cadherin PF00028.17 ABA80332.1 - 0.16 12.4 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Cadherin domain Regulator_TrmB PF11495.8 ABA80332.1 - 0.21 10.8 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Fer4_20 PF14691.6 ABA80333.1 - 2.3e-37 127.2 1.0 3.4e-37 126.7 1.0 1.2 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 ABA80333.1 - 1.7e-28 99.7 1.6 2.4e-28 99.2 1.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA80333.1 - 1.9e-10 41.1 1.5 0.00041 20.8 0.2 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 ABA80333.1 - 1.8e-09 37.3 0.8 0.0015 17.9 0.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA80333.1 - 1.1e-08 35.2 1.7 1.5e-08 34.7 0.5 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 ABA80333.1 - 1e-05 25.1 0.7 1e-05 25.1 0.7 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 ABA80333.1 - 4.8e-05 22.8 1.6 5.7e-05 22.5 0.4 1.7 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 ABA80333.1 - 9.8e-05 21.8 2.6 0.0022 17.4 0.2 2.9 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.19 ABA80333.1 - 0.00012 21.5 0.1 0.0017 17.7 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 ABA80333.1 - 0.00022 21.6 2.0 0.046 14.1 0.2 3.0 2 2 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 ABA80333.1 - 0.00041 19.7 1.3 0.1 11.9 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 ABA80333.1 - 0.00057 18.7 0.6 0.0027 16.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 ABA80333.1 - 0.0013 17.9 4.4 0.0036 16.4 0.5 3.0 4 0 0 4 4 4 1 FAD binding domain Thi4 PF01946.17 ABA80333.1 - 0.0059 15.9 1.5 0.0091 15.3 0.1 2.0 3 0 0 3 3 3 1 Thi4 family DAO PF01266.24 ABA80333.1 - 0.0073 15.9 11.1 0.059 12.9 2.1 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Shikimate_DH PF01488.20 ABA80333.1 - 0.011 15.8 0.0 6.8 6.8 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 ABA80333.1 - 0.014 14.6 0.1 0.039 13.1 0.0 1.8 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Rossmann-like PF10727.9 ABA80333.1 - 0.022 14.6 0.1 0.35 10.7 0.1 2.8 3 1 1 4 4 4 0 Rossmann-like domain XdhC_C PF13478.6 ABA80333.1 - 0.042 14.3 0.2 0.54 10.8 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_2 PF03446.15 ABA80333.1 - 0.063 13.4 0.1 0.27 11.4 0.0 2.1 3 0 0 3 3 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_9 PF13454.6 ABA80333.1 - 0.075 13.0 1.0 0.15 12.1 0.2 1.9 2 0 0 2 2 1 0 FAD-NAD(P)-binding GIDA PF01134.22 ABA80333.1 - 0.075 12.1 0.2 0.075 12.1 0.2 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 ABA80333.1 - 0.083 12.8 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 ABA80333.1 - 0.15 10.4 0.1 5.7 5.2 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Tnp_zf-ribbon_2 PF13842.6 ABA80333.1 - 0.16 12.8 4.4 0.47 11.3 4.4 1.8 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon ApbA PF02558.16 ABA80333.1 - 0.17 11.5 0.3 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 ABA80333.1 - 0.19 11.3 1.1 0.62 9.6 0.1 2.4 3 0 0 3 3 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Fer4_8 PF13183.6 ABA80333.1 - 5.4 7.6 8.1 2.7 8.5 5.4 1.9 2 0 0 2 2 1 0 4Fe-4S dicluster domain BacA PF02673.18 ABA80334.1 - 1.3e-75 254.5 16.3 1.4e-75 254.3 16.3 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA RmlD_sub_bind PF04321.17 ABA80335.1 - 1.3e-16 60.6 0.0 2.2e-15 56.5 0.0 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 ABA80335.1 - 1.7e-16 60.4 0.0 4e-16 59.2 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 ABA80335.1 - 3e-15 56.0 0.0 5.7e-09 35.4 0.0 2.2 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 ABA80335.1 - 3e-15 56.6 1.2 4.2e-15 56.1 1.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 ABA80335.1 - 2.5e-06 26.9 0.0 0.00041 19.6 0.0 2.5 1 1 0 2 2 2 1 Male sterility protein adh_short PF00106.25 ABA80335.1 - 8.2e-06 25.4 0.1 1.3e-05 24.8 0.1 1.4 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 ABA80335.1 - 2.1e-05 24.2 1.3 3.4e-05 23.5 1.3 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short_C2 PF13561.6 ABA80335.1 - 3.5e-05 23.5 1.2 0.00019 21.1 1.2 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 ABA80335.1 - 0.002 18.4 0.1 0.0033 17.7 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GDP_Man_Dehyd PF16363.5 ABA80335.1 - 0.0021 17.5 0.0 0.0053 16.2 0.0 1.6 1 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 ABA80335.1 - 0.0061 15.7 0.3 0.01 15.0 0.3 1.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Glyco_trans_4_4 PF13579.6 ABA80335.1 - 0.0086 16.5 4.6 0.027 14.9 4.6 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain KR PF08659.10 ABA80335.1 - 0.051 13.5 0.3 0.12 12.3 0.2 1.6 1 1 0 1 1 1 0 KR domain Glyco_transf_4 PF13439.6 ABA80335.1 - 0.12 12.4 0.2 0.27 11.2 0.2 1.7 1 0 0 1 1 1 0 Glycosyltransferase Family 4 DNA_pol_A_exo1 PF01612.20 ABA80336.1 - 3e-36 124.8 0.0 3.7e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 3'-5' exonuclease RNase_H_2 PF13482.6 ABA80336.1 - 8.8e-05 22.6 0.0 0.0012 18.9 0.0 2.0 1 1 0 2 2 2 1 RNase_H superfamily RNase_T PF00929.24 ABA80336.1 - 0.16 12.5 0.0 0.73 10.4 0.0 1.9 1 1 1 2 2 2 0 Exonuclease SIS PF01380.22 ABA80337.2 - 3e-26 91.8 0.0 5e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 SIS domain CBS PF00571.28 ABA80337.2 - 1.6e-18 66.9 2.0 1.8e-07 31.5 0.1 4.0 4 0 0 4 4 4 2 CBS domain SIS_2 PF13580.6 ABA80337.2 - 0.0019 18.2 0.2 0.011 15.8 0.2 2.2 1 1 0 1 1 1 1 SIS domain LptC PF06835.13 ABA80338.1 - 2.4e-05 24.0 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related OstA PF03968.14 ABA80339.1 - 5.7e-22 78.1 0.1 7.2e-22 77.7 0.1 1.1 1 0 0 1 1 1 1 OstA-like protein LptC PF06835.13 ABA80339.1 - 0.013 15.1 0.2 2.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Lipopolysaccharide-assembly, LptC-related ABC_tran PF00005.27 ABA80340.1 - 2.1e-33 115.8 0.0 3e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80340.1 - 4.7e-07 29.9 0.1 0.0019 18.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 ABA80340.1 - 5.5e-05 23.0 0.1 0.00014 21.7 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 ABA80340.1 - 9.9e-05 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA80340.1 - 0.0008 18.9 0.0 0.014 14.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80340.1 - 0.0013 19.3 0.0 0.0024 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA80340.1 - 0.0021 18.5 0.0 0.0032 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 ABA80340.1 - 0.0042 16.7 0.1 0.013 15.0 0.0 1.8 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 ABA80340.1 - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 ABA80340.1 - 0.019 14.7 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 ABA80340.1 - 0.037 13.1 0.3 0.21 10.6 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_15 PF13175.6 ABA80340.1 - 0.065 12.9 0.0 0.071 12.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 ABA80340.1 - 0.15 12.5 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 ABA80340.1 - 0.17 12.1 0.0 0.78 10.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Ribosom_S30AE_C PF16321.5 ABA80341.1 - 1.6e-18 66.2 0.0 2.7e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Sigma 54 modulation/S30EA ribosomal protein C terminus Ribosomal_S30AE PF02482.19 ABA80341.1 - 4e-18 66.0 0.3 6.2e-18 65.4 0.3 1.3 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF3987 PF13148.6 ABA80341.1 - 0.013 14.6 0.0 0.022 13.8 0.0 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3987) DUF4456 PF14644.6 ABA80341.1 - 0.037 13.7 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4456) PTS_EIIA_2 PF00359.22 ABA80342.1 - 7.4e-30 103.7 0.0 8.3e-30 103.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NTP_transferase PF00483.23 ABA80343.1 - 9.7e-29 100.7 0.0 1.3e-28 100.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 ABA80343.1 - 2.5e-07 31.2 0.1 4.4e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 ABA80344.1 - 1.3e-32 113.5 0.0 2e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 ABA80344.1 - 3.4e-09 37.3 0.3 5.4e-09 36.6 0.3 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 ABA80344.1 - 0.098 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ADH_zinc_N PF00107.26 ABA80344.1 - 0.16 11.9 0.5 0.29 11.1 0.1 1.6 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Inositol_P PF00459.25 ABA80345.1 - 2.3e-48 165.1 0.0 2.7e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF150 PF02576.17 ABA80346.1 - 3.1e-26 91.6 0.1 5.1e-26 90.9 0.1 1.4 1 0 0 1 1 1 1 RimP N-terminal domain DUF150_C PF17384.2 ABA80346.1 - 6e-11 42.3 0.1 1.2e-10 41.3 0.1 1.5 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DUF733 PF05306.11 ABA80346.1 - 0.025 14.9 0.1 0.044 14.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF733) NusA_N PF08529.11 ABA80347.1 - 1.9e-33 115.4 4.5 7.9e-33 113.4 3.0 2.4 2 0 0 2 2 2 1 NusA N-terminal domain KH_5 PF13184.6 ABA80347.1 - 5e-28 97.0 0.4 3.8e-27 94.2 0.2 2.4 2 0 0 2 2 2 1 NusA-like KH domain HHH_5 PF14520.6 ABA80347.1 - 1.1e-09 38.8 0.0 8.3e-05 23.1 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix domain KH_2 PF07650.17 ABA80347.1 - 6.3e-07 29.1 0.2 6.8e-06 25.8 0.0 2.7 2 0 0 2 2 2 1 KH domain S1 PF00575.23 ABA80347.1 - 6.1e-05 23.3 0.4 0.00027 21.2 0.4 2.2 1 0 0 1 1 1 1 S1 RNA binding domain DUF4332 PF14229.6 ABA80347.1 - 0.0021 18.3 0.0 3.5 7.9 0.0 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF4332) KH_1 PF00013.29 ABA80347.1 - 0.0067 16.2 0.0 0.52 10.2 0.0 2.7 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 ABA80347.1 - 0.061 13.2 0.0 0.25 11.2 0.0 2.1 1 0 0 1 1 1 0 KH domain DUF448 PF04296.13 ABA80348.2 - 3.3e-19 68.5 0.0 5.5e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF448) Ribosomal_L7Ae PF01248.26 ABA80348.2 - 0.041 13.6 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family IF-2 PF11987.8 ABA80349.1 - 1.3e-37 128.2 3.4 1.3e-37 128.2 3.4 2.3 3 0 0 3 3 2 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 ABA80349.1 - 2.7e-32 111.9 6.0 2.2e-30 105.7 6.0 2.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 ABA80349.1 - 2.9e-15 55.8 0.3 6.9e-15 54.6 0.3 1.7 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 ABA80349.1 - 8.7e-10 38.7 0.2 4e-09 36.6 0.2 2.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase IF2_assoc PF08364.11 ABA80349.1 - 5.8e-09 36.1 5.3 1.8e-08 34.5 5.3 1.9 1 0 0 1 1 1 1 Bacterial translation initiation factor IF-2 associated region GTP_EFTU_D2 PF03144.25 ABA80349.1 - 4.9e-06 26.8 3.8 0.0038 17.6 0.3 3.4 2 0 0 2 2 2 2 Elongation factor Tu domain 2 Arf PF00025.21 ABA80349.1 - 4.9e-05 22.9 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.22 ABA80349.1 - 8e-05 22.3 0.1 0.00019 21.1 0.1 1.7 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 ABA80349.1 - 9.3e-05 21.9 1.7 0.00017 21.1 0.2 2.2 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 ABA80349.1 - 0.00025 20.6 0.6 0.00025 20.6 0.6 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 ABA80349.1 - 0.00034 20.6 2.5 0.088 12.7 0.7 2.8 1 1 1 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 ABA80349.1 - 0.00068 19.6 1.3 0.022 14.8 0.3 2.5 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 ABA80349.1 - 0.0014 18.8 0.1 0.0033 17.7 0.1 1.6 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase DUF2228 PF10228.9 ABA80349.1 - 0.0062 16.3 0.2 0.015 15.1 0.2 1.6 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2228) AAA_23 PF13476.6 ABA80349.1 - 0.018 15.6 8.4 0.48 10.9 0.0 2.8 3 0 0 3 3 2 0 AAA domain Dynamin_N PF00350.23 ABA80349.1 - 0.019 15.0 2.8 3.5 7.7 0.0 3.7 2 1 1 3 3 3 0 Dynamin family PduV-EutP PF10662.9 ABA80349.1 - 0.025 14.3 1.4 0.052 13.3 0.4 2.1 2 1 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation FAD_binding_5 PF00941.21 ABA80349.1 - 0.2 11.4 3.2 0.46 10.2 0.5 2.4 2 0 0 2 2 2 0 FAD binding domain in molybdopterin dehydrogenase DUF572 PF04502.13 ABA80349.1 - 2 8.0 24.3 0.46 10.1 20.3 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF572) DUF4551 PF15087.6 ABA80349.1 - 9.4 4.9 15.2 14 4.3 15.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) NUDIX PF00293.28 ABA80350.1 - 4.5e-23 81.7 0.0 5e-23 81.6 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 ABA80350.1 - 1.3e-22 79.8 0.0 1.6e-22 79.6 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.6 ABA80350.1 - 0.1 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase ArgJ PF01960.18 ABA80351.1 - 8.1e-141 469.1 4.9 9.5e-141 468.9 4.9 1.0 1 0 0 1 1 1 1 ArgJ family Rotamase_3 PF13616.6 ABA80352.2 - 4.2e-24 85.3 0.0 8.8e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 ABA80352.2 - 2.2e-22 79.8 0.1 7.4e-22 78.1 0.0 1.9 2 1 0 2 2 2 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 ABA80352.2 - 2.7e-16 60.5 0.0 5.5e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 PPIC-type PPIASE domain SurA_N_3 PF13624.6 ABA80352.2 - 0.017 14.9 0.5 0.053 13.3 0.1 2.0 2 1 0 2 2 2 0 SurA N-terminal domain SecA_DEAD PF07517.14 ABA80353.1 - 1.3e-127 425.0 0.2 2.6e-127 424.1 0.2 1.5 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.13 ABA80353.1 - 8.3e-63 212.1 5.3 1.8e-62 211.0 5.3 1.6 1 0 0 1 1 1 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 ABA80353.1 - 7e-37 126.5 1.5 1.5e-36 125.5 0.1 2.2 2 0 0 2 2 2 1 SecA preprotein cross-linking domain SEC-C PF02810.15 ABA80353.1 - 5.5e-11 42.2 8.1 8.7e-11 41.5 8.1 1.3 1 0 0 1 1 1 1 SEC-C motif Helicase_C PF00271.31 ABA80353.1 - 0.0019 18.5 0.1 0.0091 16.3 0.1 2.3 1 1 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 ABA80353.1 - 0.0051 16.6 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase MEDS PF14417.6 ABA80353.1 - 0.11 12.3 1.0 1.6 8.5 0.0 3.0 3 0 0 3 3 3 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Seryl_tRNA_N PF02403.22 ABA80353.1 - 1.8 8.8 5.3 6.4 7.1 0.0 4.0 5 0 0 5 5 5 0 Seryl-tRNA synthetase N-terminal domain OmpA PF00691.20 ABA80354.2 - 1.2e-09 38.4 0.0 2.5e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 OmpA family PBP_like_2 PF12849.7 ABA80354.2 - 4.6e-06 26.5 0.0 3.5e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 PBP superfamily domain SBP_bac_11 PF13531.6 ABA80354.2 - 0.00045 20.0 10.1 0.0012 18.6 10.1 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein RadC PF04002.15 ABA80355.1 - 3.2e-44 149.8 0.0 4.9e-44 149.2 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain HHH_2 PF12826.7 ABA80355.1 - 2.5e-05 24.3 0.0 4.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Prok-JAB PF14464.6 ABA80355.1 - 6.1e-05 22.8 0.1 0.00019 21.2 0.1 1.8 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain HHH PF00633.23 ABA80355.1 - 0.0075 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 ABA80355.1 - 0.011 16.3 0.1 0.021 15.5 0.1 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain DnaJ_C PF01556.18 ABA80356.1 - 3.2e-41 140.9 0.0 4.9e-41 140.3 0.0 1.3 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 ABA80356.1 - 7.3e-26 90.1 3.9 2.4e-25 88.4 3.6 1.9 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 ABA80356.1 - 1e-12 48.2 16.4 1.7e-12 47.5 16.4 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 ABA80356.1 - 1.3e-06 28.2 17.2 0.0014 18.6 6.6 3.4 1 1 2 3 3 3 3 Tryptophan RNA-binding attenuator protein inhibitory protein HypA PF01155.19 ABA80356.1 - 0.048 13.7 1.0 0.048 13.7 1.0 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GCP_C_terminal PF04130.13 ABA80356.1 - 0.083 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Gamma tubulin complex component C-terminal DUF5351 PF17302.2 ABA80356.1 - 0.6 10.4 19.6 2.9 8.1 1.4 4.5 4 0 0 4 4 4 0 Family of unknown function (DUF5351) DUF1356 PF07092.12 ABA80356.1 - 1.5 8.0 13.2 3.2 6.9 3.9 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1356) TackOD1 PF18551.1 ABA80356.1 - 4.2 7.0 6.1 1.2 8.8 0.7 2.1 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 DZR PF12773.7 ABA80356.1 - 6.5 6.9 10.1 38 4.4 10.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon HSP70 PF00012.20 ABA80357.1 - 1.9e-271 901.6 10.3 2.2e-271 901.4 10.3 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 ABA80357.1 - 5.4e-17 61.6 1.1 2.4e-15 56.2 0.5 2.6 2 0 0 2 2 2 2 MreB/Mbl protein FtsA PF14450.6 ABA80357.1 - 0.0016 18.8 3.0 7.2 7.1 0.0 3.8 3 2 0 3 3 3 2 Cell division protein FtsA FGGY_C PF02782.16 ABA80357.1 - 0.0021 17.8 0.0 0.0066 16.2 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain DMRL_synthase PF00885.19 ABA80357.1 - 0.015 15.2 0.8 0.05 13.4 0.1 2.2 3 0 0 3 3 3 0 6,7-dimethyl-8-ribityllumazine synthase Abhydrolase_1 PF00561.20 ABA80358.1 - 1.5e-32 113.3 0.0 2e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 ABA80358.1 - 1.8e-12 48.4 7.7 2.4e-12 48.0 7.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 ABA80358.1 - 2.1e-10 40.3 0.0 1e-07 31.5 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Ndr PF03096.14 ABA80358.1 - 3.3e-05 22.7 0.0 5.5e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 ABA80358.1 - 0.18 11.9 0.0 0.49 10.5 0.0 1.6 2 0 0 2 2 2 0 TAP-like protein Peptidase_S28 PF05577.12 ABA80358.1 - 0.28 9.9 0.0 0.4 9.4 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Methyltransf_23 PF13489.6 ABA80359.1 - 4.4e-23 81.9 0.0 7.6e-23 81.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA80359.1 - 2.4e-21 76.2 0.0 4e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA80359.1 - 1.4e-16 60.9 0.0 2.6e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA80359.1 - 2.7e-15 56.5 0.0 3.5e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA80359.1 - 3.6e-14 53.3 0.0 5.3e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 ABA80359.1 - 1.4e-08 34.4 0.0 1.8e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 ABA80359.1 - 8.9e-07 28.1 0.0 1.2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 ABA80359.1 - 2.5e-06 27.0 0.0 1.7e-05 24.3 0.0 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 ABA80359.1 - 3.9e-06 26.5 0.0 5.4e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 ABA80359.1 - 0.00031 20.4 0.0 0.00046 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.12 ABA80359.1 - 0.0012 18.0 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 ABA80359.1 - 0.0019 17.8 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) ADH_zinc_N PF00107.26 ABA80359.1 - 0.0099 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA80359.1 - 0.013 16.6 0.0 0.022 15.8 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_32 PF13679.6 ABA80359.1 - 0.16 12.0 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FGGY_N PF00370.21 ABA80361.1 - 1.6e-72 244.0 0.0 2e-72 243.7 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 ABA80361.1 - 1.2e-31 110.0 3.4 2.7e-31 108.8 3.4 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 ABA80361.1 - 0.049 13.1 0.0 0.72 9.3 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family ABC_tran PF00005.27 ABA80362.1 - 6.6e-32 110.9 0.0 8.7e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80362.1 - 2e-11 44.3 0.0 8.9e-05 22.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80362.1 - 3.4e-07 29.9 0.0 9.2e-07 28.5 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 ABA80362.1 - 8.3e-05 22.5 0.0 0.00039 20.3 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 ABA80362.1 - 9.8e-05 22.9 0.0 0.00013 22.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA80362.1 - 0.0014 18.4 0.1 0.0042 16.8 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 ABA80362.1 - 0.0015 18.3 0.0 0.24 11.0 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain DUF2813 PF11398.8 ABA80362.1 - 0.003 16.9 0.0 0.017 14.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_30 PF13604.6 ABA80362.1 - 0.0039 16.9 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 ABA80362.1 - 0.0095 15.8 0.0 1.3 8.9 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 ABA80362.1 - 0.025 14.6 0.0 0.077 13.1 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.6 ABA80362.1 - 0.036 14.4 0.0 0.078 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 ABA80362.1 - 0.077 11.8 0.6 1.9 7.2 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DUF815 PF05673.13 ABA80362.1 - 0.12 11.6 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_13 PF13166.6 ABA80362.1 - 0.16 10.6 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 ABA80363.1 - 1e-40 139.6 48.0 2e-40 138.6 48.0 1.6 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_4 PF13407.6 ABA80364.1 - 4.2e-65 219.9 19.7 5.1e-65 219.6 19.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 ABA80364.1 - 1e-08 35.0 4.3 1.8e-08 34.2 4.1 1.4 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_sub_bind PF04392.12 ABA80364.1 - 1.3e-06 27.9 3.4 0.00032 20.0 0.4 2.1 2 0 0 2 2 2 2 ABC transporter substrate binding protein Peripla_BP_3 PF13377.6 ABA80364.1 - 3e-05 24.4 4.9 7.4e-05 23.1 0.4 2.2 2 0 0 2 2 2 1 Periplasmic binding protein-like domain DHQS PF01959.16 ABA80364.1 - 0.026 13.4 2.1 0.045 12.6 0.3 2.0 1 1 0 2 2 2 0 3-dehydroquinate synthase II ROK PF00480.20 ABA80365.1 - 1.6e-49 169.0 0.0 1.9e-49 168.7 0.0 1.1 1 0 0 1 1 1 1 ROK family MarR_2 PF12802.7 ABA80365.1 - 2.4e-05 24.2 0.5 6.7e-05 22.7 0.5 1.8 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 ABA80365.1 - 0.0014 18.8 0.0 0.0028 17.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 ABA80365.1 - 0.01 15.4 0.5 0.026 14.1 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 ABA80365.1 - 0.018 15.0 0.1 0.049 13.6 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 ABA80365.1 - 0.038 14.1 0.6 0.038 14.1 0.6 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA80365.1 - 0.08 12.9 0.5 0.24 11.4 0.1 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Bac_surface_Ag PF01103.23 ABA80366.1 - 8.9e-38 130.6 2.8 1.2e-37 130.2 2.8 1.2 1 0 0 1 1 1 1 Surface antigen POTRA PF07244.15 ABA80366.1 - 1.1e-09 38.8 0.0 5.9e-07 30.0 0.0 3.5 3 0 0 3 3 3 1 Surface antigen variable number repeat POTRA_TamA_1 PF17243.2 ABA80366.1 - 0.052 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 POTRA domain TamA domain 1 TamB PF04357.13 ABA80367.1 - 3.1e-52 178.1 7.4 3.1e-52 178.1 7.4 5.6 4 1 1 6 6 6 2 TamB, inner membrane protein subunit of TAM complex AsmA_2 PF13502.6 ABA80367.1 - 0.0011 18.5 28.6 0.048 13.2 1.3 6.8 4 2 2 6 6 6 2 AsmA-like C-terminal region HPTransfase PF10090.9 ABA80367.1 - 0.018 14.8 2.1 2.6 7.8 0.2 3.5 2 0 0 2 2 2 0 Histidine phosphotransferase C-terminal domain ChiW_Ig_like PF18683.1 ABA80367.1 - 0.11 12.7 9.7 0.4 10.9 0.2 4.9 2 1 2 4 4 4 0 Chitinase W immunoglobulin-like domain Virul_fac_BrkB PF03631.15 ABA80368.1 - 6.6e-54 183.2 24.9 7.8e-54 183.0 24.9 1.0 1 0 0 1 1 1 1 Virulence factor BrkB YjbF PF11102.8 ABA80370.2 - 1.2e-32 113.2 0.0 1.4e-32 113.0 0.0 1.1 1 0 0 1 1 1 1 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF YjbH PF06082.11 ABA80371.1 - 1.3e-229 764.5 0.2 1.4e-229 764.3 0.2 1.0 1 0 0 1 1 1 1 Exopolysaccharide biosynthesis protein YbjH BBP2_2 PF10082.9 ABA80371.1 - 0.012 14.4 0.1 0.11 11.3 0.1 2.3 2 0 0 2 2 2 0 Putative beta-barrel porin 2 OMP_b-brl PF13505.6 ABA80371.1 - 0.62 10.2 13.7 0.14 12.2 1.1 4.0 2 2 2 4 4 4 0 Outer membrane protein beta-barrel domain Polysacc_synt_2 PF02719.15 ABA80372.1 - 1.1e-114 382.5 0.0 1.5e-114 382.1 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 ABA80372.1 - 4.1e-19 69.0 0.1 6e-18 65.2 0.0 2.6 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA80372.1 - 4.7e-11 42.7 0.0 1e-10 41.5 0.0 1.5 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 ABA80372.1 - 6.3e-11 41.9 0.5 1.2e-08 34.4 0.6 3.4 2 1 0 2 2 2 1 RmlD substrate binding domain CoA_binding_3 PF13727.6 ABA80372.1 - 4.5e-10 39.8 0.8 1e-09 38.6 0.8 1.6 1 0 0 1 1 1 1 CoA-binding domain 3Beta_HSD PF01073.19 ABA80372.1 - 2.7e-09 36.4 0.0 4.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 ABA80372.1 - 6.4e-07 29.4 4.5 6.8e-05 22.8 1.1 3.6 3 3 2 5 5 5 1 NAD(P)H-binding NAD_binding_4 PF07993.12 ABA80372.1 - 0.00065 18.9 0.7 0.099 11.8 0.3 2.5 1 1 1 2 2 2 2 Male sterility protein Pyr_redox_2 PF07992.14 ABA80372.1 - 0.00066 19.0 0.1 0.094 11.9 0.0 2.7 1 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 ABA80372.1 - 0.002 18.3 0.1 0.083 13.0 0.0 2.3 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PglD_N PF17836.1 ABA80372.1 - 0.0028 18.2 0.0 0.0078 16.8 0.0 1.8 1 0 0 1 1 1 1 PglD N-terminal domain TrkA_N PF02254.18 ABA80372.1 - 0.0066 16.7 0.1 0.35 11.1 0.0 2.7 2 0 0 2 2 2 1 TrkA-N domain KR PF08659.10 ABA80372.1 - 0.014 15.3 1.0 0.19 11.6 0.2 2.6 3 0 0 3 3 3 0 KR domain CoA_binding PF02629.19 ABA80372.1 - 0.018 15.7 0.0 0.06 14.0 0.0 1.9 1 0 0 1 1 1 0 CoA binding domain NmrA PF05368.13 ABA80372.1 - 0.02 14.5 0.0 0.051 13.1 0.0 1.6 1 1 0 1 1 1 0 NmrA-like family ThiF PF00899.21 ABA80372.1 - 0.024 14.0 0.1 5.9 6.2 0.0 2.3 2 0 0 2 2 2 0 ThiF family ApbA PF02558.16 ABA80372.1 - 0.041 13.5 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 ABA80372.1 - 0.11 13.3 0.0 0.3 11.9 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Ldh_1_N PF00056.23 ABA80372.1 - 0.17 12.0 0.1 17 5.5 0.0 2.5 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Bac_transf PF02397.16 ABA80373.1 - 1.1e-47 162.1 0.0 1.4e-47 161.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial sugar transferase Epimerase PF01370.21 ABA80374.1 - 5.4e-12 45.7 0.0 6.2e-10 38.9 0.0 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA80374.1 - 1.6e-06 27.4 0.0 6.4e-05 22.2 0.0 2.0 2 0 0 2 2 2 2 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 ABA80374.1 - 1.8e-05 24.3 0.0 3.4e-05 23.4 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 ABA80374.1 - 0.19 10.9 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein MarR_2 PF12802.7 ABA80375.1 - 2e-12 46.8 0.1 4.5e-12 45.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 ABA80375.1 - 5.1e-06 26.6 0.0 7.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 ABA80375.1 - 8.2e-06 26.2 0.0 1.6e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 ABA80375.1 - 1.8e-05 24.5 0.0 2.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 ABA80375.1 - 0.00019 21.4 0.1 0.00041 20.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 ABA80375.1 - 0.006 16.4 0.1 0.016 15.0 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Glutaredoxin PF00462.24 ABA80376.1 - 2e-24 85.5 0.0 2.4e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 ABA80376.1 - 0.00029 21.2 0.0 0.00036 20.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.6 ABA80376.1 - 0.00035 20.9 0.0 0.0004 20.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain SH3BGR PF04908.15 ABA80376.1 - 0.0077 16.4 0.0 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein Thioredoxin_3 PF13192.6 ABA80376.1 - 0.038 14.0 0.0 0.079 13.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain Amidase02_C PF12123.8 ABA80376.1 - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 N-acetylmuramoyl-l-alanine amidase GST_N_2 PF13409.6 ABA80376.1 - 0.17 12.2 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Pribosyltran PF00156.27 ABA80377.1 - 1.7e-09 37.4 0.0 2.5e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DZR PF12773.7 ABA80377.1 - 0.0022 18.0 5.2 0.043 13.8 3.5 2.5 1 1 1 2 2 2 2 Double zinc ribbon DNA_RNApol_7kD PF03604.13 ABA80377.1 - 2.6 7.8 4.2 2.6 7.8 1.2 2.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Methyltransf_11 PF08241.12 ABA80378.1 - 1e-05 26.1 0.0 2.2e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA80378.1 - 0.075 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 ABA80378.1 - 0.089 13.5 0.0 0.17 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 ABA80378.1 - 0.1 13.3 0.0 0.24 12.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Ferrochelatase PF00762.19 ABA80379.2 - 1.6e-106 356.0 0.0 1.8e-106 355.8 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 ABA80379.2 - 9.9e-05 22.6 0.0 0.13 12.6 0.0 2.4 2 0 0 2 2 2 2 CbiX YkuD PF03734.14 ABA80381.1 - 1e-14 55.2 0.0 1.5e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain CAP PF00188.26 ABA80382.2 - 3.7e-15 56.9 0.0 4.8e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Cysteine-rich secretory protein family PorA PF11271.8 ABA80382.2 - 0.022 14.1 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Porin PorA Ntox15 PF15604.6 ABA80382.2 - 0.16 12.1 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Novel toxin 15 Thermopsin PF05317.11 ABA80382.2 - 0.2 11.1 0.0 0.29 10.6 0.0 1.1 1 0 0 1 1 1 0 Thermopsin YkuD PF03734.14 ABA80383.2 - 1.1e-18 68.0 0.1 1.5e-18 67.6 0.1 1.1 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain LPAM_2 PF13627.6 ABA80383.2 - 1.4 8.9 4.8 2.5 8.1 4.8 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site tRNA_U5-meth_tr PF05958.11 ABA80384.1 - 5e-09 35.6 0.0 1.9e-07 30.4 0.0 2.0 2 0 0 2 2 2 2 tRNA (Uracil-5-)-methyltransferase ABC_tran PF00005.27 ABA80385.1 - 1.2e-34 119.8 0.0 2.4e-34 118.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 ABA80385.1 - 5.5e-17 62.3 10.5 7.8e-17 61.8 10.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 ABA80385.1 - 3.8e-06 26.5 0.8 1.8e-05 24.3 0.8 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA80385.1 - 8.6e-05 23.0 0.5 0.00019 21.9 0.5 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA80385.1 - 0.0024 18.1 0.1 0.017 15.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 ABA80385.1 - 0.0032 17.6 0.0 0.014 15.5 0.0 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_29 PF13555.6 ABA80385.1 - 0.0033 17.1 0.5 0.017 14.9 0.1 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.29 ABA80385.1 - 0.004 17.6 0.0 3.5 8.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 ABA80385.1 - 0.011 15.9 0.0 0.027 14.5 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 ABA80385.1 - 0.016 14.5 0.0 0.071 12.4 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin AAA_21 PF13304.6 ABA80385.1 - 0.043 13.6 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA80385.1 - 0.051 13.5 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 ABA80385.1 - 0.067 13.4 0.1 0.17 12.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA80385.1 - 0.082 12.9 0.2 1.2 9.1 0.2 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 ABA80385.1 - 0.095 12.9 2.4 0.51 10.6 0.9 2.8 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 ABA80386.1 - 3.1e-36 124.9 0.0 4.9e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 ABA80386.1 - 6.6e-23 81.7 0.7 8.9e-23 81.3 0.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 ABA80386.1 - 5.4e-08 32.5 0.0 3.5e-07 29.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 ABA80386.1 - 0.0036 17.7 0.0 0.5 10.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 ABA80386.1 - 0.0038 17.3 0.0 0.0097 16.0 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 ABA80386.1 - 0.0054 16.4 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 ABA80386.1 - 0.0065 16.8 0.1 0.06 13.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA80386.1 - 0.0074 16.7 0.2 0.019 15.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 ABA80386.1 - 0.011 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain NTPase_1 PF03266.15 ABA80386.1 - 0.02 14.8 0.3 2 8.3 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 ABA80386.1 - 0.043 13.5 0.1 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA80386.1 - 0.051 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 ABA80386.1 - 0.052 12.8 0.1 0.53 9.5 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.6 ABA80386.1 - 0.17 11.6 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain PolyA_pol PF01743.20 ABA80387.1 - 3.3e-26 92.2 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 ABA80387.1 - 2.8e-07 30.2 0.0 7.4e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 Probable RNA and SrmB- binding site of polymerase A LOB PF03195.14 ABA80387.1 - 0.17 12.5 0.0 0.34 11.5 0.0 1.4 1 0 0 1 1 1 0 Lateral organ boundaries (LOB) domain NUDIX PF00293.28 ABA80388.1 - 9.8e-20 70.9 0.8 1.5e-19 70.4 0.8 1.2 1 0 0 1 1 1 1 NUDIX domain HSP33 PF01430.19 ABA80389.1 - 4.9e-75 252.4 0.0 5.6e-75 252.2 0.0 1.0 1 0 0 1 1 1 1 Hsp33 protein NUDIX PF00293.28 ABA80390.1 - 4.8e-17 62.2 0.1 5.7e-17 62.0 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain SpoIIE PF07228.12 ABA80391.2 - 5.2e-42 143.9 0.2 7.8e-42 143.4 0.2 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Response_reg PF00072.24 ABA80391.2 - 3.8e-26 91.4 0.0 6.1e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 ABA80392.1 - 2.3e-08 34.2 0.2 3e-08 33.8 0.2 1.3 1 0 0 1 1 1 1 Hpt domain DUF3572 PF12096.8 ABA80392.1 - 0.033 14.4 0.1 0.06 13.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3572) Arginosuc_synth PF00764.19 ABA80393.1 - 2.9e-154 514.0 0.0 3.4e-154 513.8 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.21 ABA80393.1 - 0.006 16.3 0.0 0.0085 15.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 ABA80393.1 - 0.012 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF533 PF04391.12 ABA80394.2 - 3.7e-37 127.6 10.2 1.4e-36 125.7 10.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF533) DUF3759 PF12585.8 ABA80394.2 - 0.017 15.1 0.3 0.047 13.7 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3759) Sulfotransfer_3 PF13469.6 ABA80395.1 - 0.011 16.1 0.0 0.029 14.8 0.0 1.8 1 1 0 1 1 1 0 Sulfotransferase family Aminotran_4 PF01063.19 ABA80396.1 - 7.9e-39 133.8 0.0 1e-38 133.5 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV PfkB PF00294.24 ABA80397.1 - 1.1e-40 139.8 4.4 1.6e-40 139.3 4.4 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PTA_PTB PF01515.19 ABA80398.2 - 4.3e-72 243.1 0.7 6.2e-72 242.6 0.7 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 ABA80398.2 - 7.8e-29 100.8 0.3 8.5e-27 94.1 0.3 2.3 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 ABA80398.2 - 2.6e-23 82.6 0.5 6.8e-23 81.3 0.5 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain ThiF PF00899.21 ABA80398.2 - 0.2 11.0 0.3 0.44 9.9 0.3 1.5 1 0 0 1 1 1 0 ThiF family MutS_V PF00488.21 ABA80399.1 - 4.6e-85 284.4 0.0 7e-85 283.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 ABA80399.1 - 3.5e-41 140.0 0.0 7.6e-41 138.9 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 ABA80399.1 - 2.8e-37 128.8 1.6 5e-37 128.0 1.6 1.4 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 ABA80399.1 - 4.5e-21 75.0 0.0 8.4e-21 74.1 0.0 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 ABA80399.1 - 1.3e-18 67.6 0.0 4e-18 66.0 0.0 1.8 2 0 0 2 2 2 1 MutS domain II AAA_27 PF13514.6 ABA80399.1 - 0.031 13.9 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 ABA80399.1 - 0.049 13.4 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA80399.1 - 0.17 12.4 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain GrpE PF01025.19 ABA80400.2 - 2.7e-47 160.5 0.0 3.1e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 GrpE HrcA PF01628.21 ABA80401.1 - 3.5e-52 177.5 0.0 5.2e-52 176.9 0.0 1.2 1 0 0 1 1 1 1 HrcA protein C terminal domain HrcA_DNA-bdg PF03444.15 ABA80401.1 - 0.00074 19.1 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Ribosomal_S19e PF01090.19 ABA80401.1 - 0.14 11.9 0.0 0.38 10.4 0.0 1.7 2 0 0 2 2 2 0 Ribosomal protein S19e RNase_PH PF01138.21 ABA80402.1 - 2.8e-21 76.4 0.0 6.5e-21 75.2 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 ABA80402.1 - 6.5e-09 35.7 0.0 1.2e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ham1p_like PF01725.16 ABA80403.1 - 9.2e-58 195.3 0.0 1.1e-57 195.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Oxidored_nitro PF00148.19 ABA80403.1 - 0.07 11.8 0.0 0.086 11.6 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Ribonuc_L-PSP PF01042.21 ABA80404.1 - 4e-21 75.3 0.0 4.7e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Radical_SAM PF04055.21 ABA80405.1 - 1.9e-13 51.1 0.0 3.1e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 ABA80405.1 - 5.7e-08 32.7 3.8 5.7e-08 32.7 2.4 1.8 2 0 0 2 2 2 1 HemN C-terminal domain DUF454 PF04304.13 ABA80406.1 - 1.6e-38 131.3 3.8 1.8e-38 131.1 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF454) DUF4118 PF13493.6 ABA80406.1 - 0.035 13.9 0.3 0.035 13.9 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) ParBc PF02195.18 ABA80407.2 - 1.1e-29 102.5 0.2 2.1e-29 101.7 0.2 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_ParB PF17762.1 ABA80407.2 - 1.3e-14 53.8 0.0 3.3e-14 52.4 0.0 1.8 1 0 0 1 1 1 1 HTH domain found in ParB protein KorB PF08535.10 ABA80407.2 - 0.0015 18.5 0.1 0.0089 16.0 0.0 2.1 2 0 0 2 2 2 1 KorB domain SoPB_HTH PF18090.1 ABA80407.2 - 0.0036 17.4 0.0 0.013 15.6 0.0 1.9 1 1 1 2 2 2 1 Centromere-binding protein HTH domain HTH_31 PF13560.6 ABA80407.2 - 0.014 15.8 3.4 0.21 12.0 0.6 3.7 3 1 0 3 3 3 0 Helix-turn-helix domain AAA_31 PF13614.6 ABA80408.1 - 1.5e-56 191.1 0.0 2.8e-56 190.2 0.0 1.3 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 ABA80408.1 - 1.2e-26 93.3 0.0 1.8e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA80408.1 - 2.9e-12 46.4 0.1 5.5e-11 42.2 0.1 2.2 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 ABA80408.1 - 8.2e-11 41.8 0.0 1.9e-10 40.6 0.0 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 ABA80408.1 - 3.5e-09 36.5 0.0 6.3e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 ABA80408.1 - 3.5e-09 36.5 0.0 1.9e-08 34.1 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 ABA80408.1 - 1.2e-06 27.9 0.0 2.9e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 ABA80408.1 - 0.0016 17.8 0.1 0.14 11.4 0.1 2.2 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 ABA80408.1 - 0.027 14.3 0.0 0.066 13.0 0.0 1.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 ABA80408.1 - 0.027 13.4 0.1 0.071 12.1 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FTHFS PF01268.19 ABA80408.1 - 0.067 11.4 0.1 0.094 10.9 0.1 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase ATP_bind_1 PF03029.17 ABA80408.1 - 0.077 12.8 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 ABA80408.1 - 0.15 11.6 0.1 0.91 9.1 0.1 2.0 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain DUF87 PF01935.17 ABA80408.1 - 0.17 12.0 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain GidB PF02527.15 ABA80409.1 - 2e-40 138.1 0.0 2.4e-40 137.8 0.0 1.0 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 ABA80409.1 - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA80409.1 - 0.0022 17.6 0.0 0.0036 16.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 ABA80409.1 - 0.015 15.9 0.0 0.03 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain GIDA PF01134.22 ABA80410.1 - 1.3e-158 528.3 0.0 1.6e-158 528.0 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A GIDA_assoc PF13932.6 ABA80410.1 - 5.6e-62 209.7 0.0 8.1e-62 209.1 0.0 1.2 1 0 0 1 1 1 1 GidA associated domain FAD_oxidored PF12831.7 ABA80410.1 - 8.7e-09 35.2 4.4 8.7e-09 35.2 4.4 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA80410.1 - 1.2e-06 28.0 1.5 3.3e-06 26.5 1.5 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 ABA80410.1 - 2.1e-05 23.9 1.4 4.6e-05 22.8 1.4 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 ABA80410.1 - 2.3e-05 24.9 1.1 0.00021 21.8 0.9 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 ABA80410.1 - 7.7e-05 21.7 1.7 0.038 12.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 ABA80410.1 - 0.00012 21.3 7.5 0.00045 19.4 4.2 2.5 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 ABA80410.1 - 0.00015 21.4 7.1 0.054 13.1 0.2 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 ABA80410.1 - 0.0056 16.7 0.1 0.0056 16.7 0.1 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding YAcAr PF10686.9 ABA80410.1 - 0.0059 16.5 0.3 1.6 8.8 0.2 2.6 2 0 0 2 2 2 1 YspA, cpYpsA-related SLOG family HI0933_like PF03486.14 ABA80410.1 - 0.0071 15.1 3.9 0.018 13.8 1.9 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 ABA80410.1 - 0.013 14.7 0.1 0.022 14.0 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA80410.1 - 0.025 14.8 2.1 0.1 12.8 2.1 2.2 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 ABA80410.1 - 0.053 12.6 2.7 0.083 11.9 1.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 ABA80410.1 - 0.15 11.2 0.2 0.29 10.3 0.2 1.4 1 0 0 1 1 1 0 Thi4 family MnmE_helical PF12631.7 ABA80411.1 - 6.1e-45 153.9 0.3 7.5e-45 153.6 0.3 1.1 1 0 0 1 1 1 1 MnmE helical domain TrmE_N PF10396.9 ABA80411.1 - 1.1e-29 103.0 0.0 2.1e-29 102.1 0.0 1.5 1 0 0 1 1 1 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.23 ABA80411.1 - 6.8e-22 77.7 0.0 2.4e-21 76.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 ABA80411.1 - 1.4e-06 27.9 0.0 2.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 ABA80411.1 - 1.6e-06 28.3 0.0 3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Dynamin family AAA_28 PF13521.6 ABA80411.1 - 6.2e-05 23.3 0.1 0.0002 21.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 ABA80411.1 - 0.00014 22.4 0.0 0.00097 19.7 0.0 2.2 2 0 0 2 2 2 1 ABC transporter MeaB PF03308.16 ABA80411.1 - 0.0057 15.7 0.1 2 7.4 0.0 3.1 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 ABA80411.1 - 0.0085 16.6 0.0 0.034 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 ABA80411.1 - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 ABA80411.1 - 0.028 14.2 0.0 0.084 12.6 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AIG1 PF04548.16 ABA80411.1 - 0.066 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AIG1 family GBP PF02263.19 ABA80411.1 - 0.081 12.2 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Guanylate-binding protein, N-terminal domain FtsK_SpoIIIE PF01580.18 ABA80411.1 - 0.085 12.2 1.2 0.46 9.8 0.0 2.5 2 1 1 3 3 3 0 FtsK/SpoIIIE family Virul_Fac PF10139.9 ABA80411.1 - 0.11 10.7 0.0 0.15 10.2 0.0 1.1 1 0 0 1 1 1 0 Putative bacterial virulence factor Fic_N PF13784.6 ABA80411.1 - 0.11 12.5 0.0 0.4 10.7 0.0 1.9 1 0 0 1 1 1 0 Fic/DOC family N-terminal GTP_EFTU PF00009.27 ABA80411.1 - 0.18 11.3 0.0 0.49 9.9 0.0 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Rho_RNA_bind PF07497.12 ABA80412.1 - 7.7e-28 96.2 0.0 1.5e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain ATP-synt_ab PF00006.25 ABA80412.1 - 2e-22 79.9 0.1 2.9e-22 79.4 0.1 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_N PF07498.12 ABA80412.1 - 1.4e-15 56.9 0.1 4e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain AAA_25 PF13481.6 ABA80412.1 - 8.9e-05 22.1 0.1 0.00031 20.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 ABA80412.1 - 0.00045 20.2 0.0 0.00077 19.4 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 ABA80412.1 - 0.0053 17.0 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain OB_RNB PF08206.11 ABA80412.1 - 0.02 14.6 0.0 0.05 13.3 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease B OB domain AAA PF00004.29 ABA80412.1 - 0.027 14.9 0.0 0.069 13.6 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 ABA80412.1 - 0.059 13.4 0.0 1.3 9.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain TcdB_toxin_midN PF12256.8 ABA80412.1 - 0.06 12.7 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Insecticide toxin TcdB middle/N-terminal region AAA_16 PF13191.6 ABA80412.1 - 0.074 13.4 0.0 0.22 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain UPF0093 PF03653.13 ABA80413.2 - 2.1e-58 196.7 7.2 2.5e-58 196.4 7.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0093) CopD PF05425.13 ABA80413.2 - 0.011 16.1 5.1 0.011 16.1 5.1 1.9 1 1 1 2 2 2 0 Copper resistance protein D Maf PF02545.14 ABA80414.1 - 6.2e-33 114.0 0.0 6.9e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein DUF465 PF04325.13 ABA80414.1 - 0.11 12.5 0.2 0.24 11.5 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF465) DinB_2 PF12867.7 ABA80414.1 - 0.13 12.8 0.9 0.33 11.5 0.9 1.7 1 1 0 1 1 1 0 DinB superfamily Shikimate_dh_N PF08501.11 ABA80415.1 - 7.2e-26 90.3 0.0 1.2e-25 89.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 ABA80415.1 - 3.8e-10 39.3 0.3 7.3e-10 38.4 0.3 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 ABA80415.1 - 1.8e-06 28.1 0.0 3e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase CoaE PF01121.20 ABA80416.1 - 2.2e-36 125.2 0.0 2.6e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 Dephospho-CoA kinase RNase_T PF00929.24 ABA80417.1 - 1.6e-32 113.4 0.0 1.9e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 Exonuclease RNase_H_2 PF13482.6 ABA80417.1 - 0.01 15.8 0.0 0.029 14.4 0.0 1.7 1 1 0 1 1 1 0 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 ABA80417.1 - 0.19 11.4 0.0 0.88 9.3 0.0 1.9 2 0 0 2 2 2 0 3'-5' exonuclease SecB PF02556.14 ABA80418.2 - 5.4e-49 165.7 0.0 6.5e-49 165.5 0.0 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB FxsA PF04186.13 ABA80419.1 - 3.3e-27 94.8 12.4 4e-27 94.5 12.4 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Tim44 PF04280.15 ABA80420.1 - 1.4e-46 158.2 0.1 2e-46 157.8 0.1 1.2 1 0 0 1 1 1 1 Tim44-like domain MltA PF03562.17 ABA80421.1 - 5.1e-72 242.3 0.0 2.8e-71 239.9 0.0 1.8 1 1 0 1 1 1 1 MltA specific insert domain 3D PF06725.11 ABA80421.1 - 2.2e-22 79.0 0.1 3.4e-22 78.4 0.1 1.3 1 0 0 1 1 1 1 3D domain Smr PF01713.21 ABA80422.1 - 9.9e-22 77.1 0.1 1.6e-21 76.4 0.1 1.4 1 0 0 1 1 1 1 Smr domain Glyoxalase PF00903.25 ABA80423.1 - 2.7e-10 40.5 0.0 5.5e-10 39.5 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 ABA80423.1 - 0.00018 22.3 0.1 0.00021 22.0 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 ABA80423.1 - 0.096 12.6 0.0 3.3 7.7 0.0 2.0 2 0 0 2 2 2 0 Glyoxalase-like domain Glyoxalase_4 PF13669.6 ABA80423.1 - 0.12 12.7 0.0 0.23 11.8 0.0 1.5 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Peripla_BP_3 PF13377.6 ABA80424.1 - 1.7e-40 139.1 0.1 3.4e-40 138.1 0.1 1.5 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 ABA80424.1 - 5.4e-25 88.4 0.0 6.5e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 ABA80424.1 - 1.2e-17 63.5 0.5 2.3e-17 62.5 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 ABA80424.1 - 0.0011 18.6 0.0 0.0027 17.3 0.0 1.7 1 1 0 2 2 2 1 Periplasmic binding protein domain HTH_Tnp_ISL3 PF13542.6 ABA80424.1 - 0.02 14.3 0.4 0.04 13.3 0.4 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 ABA80424.1 - 0.044 14.1 0.8 0.044 14.1 0.8 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 ABA80424.1 - 0.059 13.2 0.1 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_38 PF13936.6 ABA80424.1 - 0.11 12.3 1.4 0.37 10.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain AP_endonuc_2 PF01261.24 ABA80425.1 - 5.1e-38 130.6 0.8 9.1e-38 129.8 0.2 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 ABA80425.1 - 3.2e-22 78.0 0.3 1.8e-21 75.6 0.1 2.3 2 0 0 2 2 2 1 AP endonuclease family 2 C terminus GFO_IDH_MocA PF01408.22 ABA80426.1 - 5.8e-25 88.5 0.1 1.7e-24 87.0 0.1 1.7 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 ABA80426.1 - 5.8e-09 36.0 0.0 9.6e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Reprolysin_2 PF13574.6 ABA80426.1 - 0.24 11.3 0.0 0.4 10.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like ABC_tran PF00005.27 ABA80427.1 - 4.5e-47 160.0 0.0 7e-28 97.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA80427.1 - 3.1e-11 43.6 0.2 0.00084 19.2 0.0 3.1 3 0 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA80427.1 - 0.003 17.3 0.1 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.29 ABA80427.1 - 0.0075 16.7 0.1 9 6.7 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 ABA80427.1 - 0.033 14.0 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_22 PF13401.6 ABA80427.1 - 0.045 14.0 0.5 1.5 9.1 0.0 3.1 4 0 0 4 4 4 0 AAA domain AAA_15 PF13175.6 ABA80427.1 - 0.067 12.9 0.0 0.091 12.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 ABA80427.1 - 0.089 12.2 0.0 0.56 9.6 0.0 2.3 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80427.1 - 0.095 13.2 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 ABA80427.1 - 0.11 11.4 0.0 0.3 10.0 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain AAA_27 PF13514.6 ABA80427.1 - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA80427.1 - 0.17 11.8 0.2 0.88 9.5 0.0 2.2 3 0 0 3 3 3 0 RsgA GTPase AAA_30 PF13604.6 ABA80427.1 - 0.19 11.4 5.6 0.4 10.4 1.2 3.3 3 1 0 3 3 3 0 AAA domain AAA_33 PF13671.6 ABA80427.1 - 1.7 8.8 3.5 36 4.5 0.1 3.5 4 0 0 4 4 4 0 AAA domain BPD_transp_2 PF02653.16 ABA80428.1 - 3.4e-39 134.6 44.4 5.7e-39 133.9 44.4 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF543 PF04418.12 ABA80428.1 - 1.8 8.6 7.1 15 5.6 1.3 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF543) Peripla_BP_4 PF13407.6 ABA80429.1 - 4.9e-43 147.6 1.6 6.9e-43 147.1 1.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 ABA80429.1 - 1.2e-08 34.7 0.1 1.5e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 ABA80429.1 - 8.5e-05 22.9 0.0 0.00016 22.1 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain TAT_signal PF10518.9 ABA80429.1 - 0.014 15.2 7.2 0.035 14.0 7.2 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 ABA80429.1 - 0.025 13.9 4.0 0.025 13.9 4.0 2.2 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Glyco_tran_WecB PF03808.13 ABA80429.1 - 0.078 12.9 0.1 0.45 10.4 0.0 2.2 2 1 1 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family UPRTase PF14681.6 ABA80429.1 - 0.084 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase NMO PF03060.15 ABA80431.1 - 2.1e-26 93.1 6.2 9.5e-24 84.4 6.2 2.6 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 ABA80431.1 - 8.8e-08 31.6 5.4 1.4e-07 30.9 5.4 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 ABA80431.1 - 0.0018 17.5 0.3 0.0029 16.8 0.3 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Acetate_kinase PF00871.17 ABA80433.1 - 3e-98 329.1 0.0 3.5e-98 328.9 0.0 1.0 1 0 0 1 1 1 1 Acetokinase family Phage_Mu_Gp45 PF06890.12 ABA80433.1 - 0.071 12.8 0.2 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein PTA_PTB PF01515.19 ABA80434.1 - 4e-41 141.4 1.3 1.6e-40 139.4 1.6 1.6 1 1 1 2 2 2 1 Phosphate acetyl/butaryl transferase MaoC_dehydratas PF01575.19 ABA80434.1 - 1.1e-21 76.6 0.0 2.7e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 ABA80434.1 - 1.9e-09 37.8 0.0 3.5e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 ABA80434.1 - 0.012 16.0 0.0 0.03 14.7 0.0 1.7 1 0 0 1 1 1 0 Thioesterase superfamily 4HBT_2 PF13279.6 ABA80434.1 - 0.019 15.4 0.0 0.031 14.7 0.0 1.3 1 0 0 1 1 1 0 Thioesterase-like superfamily Fn3-like PF14310.6 ABA80434.1 - 0.18 11.9 0.0 7.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Fibronectin type III-like domain adh_short_C2 PF13561.6 ABA80435.1 - 3.8e-82 275.4 0.3 4.2e-82 275.2 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80435.1 - 6.7e-21 74.6 0.0 8.5e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Enoyl_reductase PF12241.8 ABA80435.1 - 0.0058 16.0 0.0 1.2 8.4 0.0 2.1 2 0 0 2 2 2 2 Trans-2-enoyl-CoA reductase catalytic region EccE PF11203.8 ABA80435.1 - 0.026 14.8 2.2 0.061 13.6 0.2 2.4 2 1 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE IFR3_antag PF14754.6 ABA80435.1 - 0.08 12.1 0.1 0.14 11.4 0.1 1.4 1 0 0 1 1 1 0 Papain-like auto-proteinase PhaC_N PF07167.13 ABA80436.1 - 3.5e-53 179.8 0.0 5e-53 179.3 0.0 1.2 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus PHBC_N PF12551.8 ABA80436.1 - 7.4e-14 51.2 6.5 7.4e-14 51.2 6.5 2.4 2 0 0 2 2 2 1 Poly-beta-hydroxybutyrate polymerase N terminal Abhydrolase_1 PF00561.20 ABA80436.1 - 6.7e-12 45.6 0.0 2.2e-11 43.9 0.0 1.9 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 ABA80436.1 - 6.7e-05 22.7 0.0 0.42 10.4 0.0 2.3 2 0 0 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.18 ABA80436.1 - 0.11 12.0 0.1 0.48 9.9 0.1 2.1 2 1 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 ABA80437.1 - 1.5e-28 100.2 0.0 1.8e-21 77.0 0.2 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 ABA80437.1 - 2.2e-20 74.2 9.8 3.8e-20 73.4 9.8 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 ABA80437.1 - 3.1e-14 52.8 0.0 8.3e-14 51.4 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 ABA80437.1 - 9.9e-05 21.2 0.0 0.00031 19.6 0.0 1.7 2 0 0 2 2 2 1 Ndr family Abhydrolase_2 PF02230.16 ABA80437.1 - 0.0055 16.5 0.0 0.32 10.8 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 ABA80437.1 - 0.011 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.20 ABA80437.1 - 0.028 14.1 0.0 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 Putative esterase Abhydrolase_5 PF12695.7 ABA80437.1 - 0.17 11.7 0.0 17 5.1 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family PLDc_N PF13396.6 ABA80438.1 - 4.5e-13 48.9 9.7 6.3e-13 48.4 9.7 1.2 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal DUF4492 PF14899.6 ABA80438.1 - 0.026 14.5 2.1 0.044 13.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4492) PilX_N PF14341.6 ABA80438.1 - 1.1 9.3 3.8 0.38 10.7 1.1 1.6 1 1 1 2 2 2 0 PilX N-terminal DUF2207 PF09972.9 ABA80438.1 - 3 6.5 4.1 3.1 6.4 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2383 PF09537.10 ABA80439.1 - 3.1e-24 85.5 0.0 3.7e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) BLUF PF04940.12 ABA80440.1 - 3.7e-25 87.9 0.0 5e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Sensors of blue-light using FAD Response_reg PF00072.24 ABA80441.1 - 2.3e-06 27.7 0.0 4.3e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 Response regulator receiver domain Potass_KdpF PF09604.10 ABA80443.1 - 3.2e-10 39.7 5.0 3.6e-10 39.6 5.0 1.1 1 0 0 1 1 1 1 F subunit of K+-transporting ATPase (Potass_KdpF) KdpA PF03814.15 ABA80444.1 - 1.6e-221 736.3 27.1 1.9e-221 736.0 27.1 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit DUF2754 PF10953.8 ABA80444.1 - 1.1 9.5 7.7 13 6.1 0.8 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2754) Hydrolase PF00702.26 ABA80445.1 - 9.1e-31 107.8 3.5 1.5e-30 107.1 3.5 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 ABA80445.1 - 2.8e-30 105.2 2.4 2.8e-30 105.2 2.4 2.3 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase_3 PF08282.12 ABA80445.1 - 3.4e-06 27.0 0.3 6.9e-06 26.0 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA80445.1 - 1.3e-05 25.7 0.3 4.6e-05 23.9 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cadherin_4 PF17803.1 ABA80445.1 - 0.12 13.0 0.9 0.71 10.5 0.4 2.5 2 0 0 2 2 2 0 Bacterial cadherin-like domain KdpC PF02669.15 ABA80446.1 - 1.8e-64 216.9 0.0 2e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain HTH_AsnC-type PF13404.6 ABA80446.1 - 0.11 12.3 1.8 0.31 10.9 1.8 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain KdpD PF02702.17 ABA80447.1 - 1.4e-96 322.0 0.2 2.2e-96 321.3 0.2 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 ABA80447.1 - 2.1e-23 82.1 11.8 5.3e-23 80.9 11.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c PF02518.26 ABA80447.1 - 5.1e-22 78.5 0.0 9.3e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA80447.1 - 4.6e-14 52.2 4.5 7.2e-14 51.6 0.1 3.6 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 ABA80447.1 - 5e-11 43.0 0.0 1.3e-10 41.7 0.0 1.7 1 0 0 1 1 1 1 GAF domain Usp PF00582.26 ABA80447.1 - 7e-08 33.1 1.0 5.7e-07 30.1 1.0 2.6 1 1 0 1 1 1 1 Universal stress protein family GAF_2 PF13185.6 ABA80447.1 - 4.6e-07 30.2 0.2 4.6e-07 30.2 0.2 3.4 3 2 0 3 3 3 1 GAF domain HATPase_c_2 PF13581.6 ABA80447.1 - 0.00017 21.5 0.1 0.001 19.0 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain CCB2_CCB4 PF11152.8 ABA80447.1 - 0.016 14.5 0.0 0.21 10.9 0.0 2.4 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 DUF3369 PF11849.8 ABA80447.1 - 0.12 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3369) Response_reg PF00072.24 ABA80448.1 - 1.1e-25 90.0 0.0 1.6e-25 89.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA80448.1 - 7.7e-23 80.4 0.0 2.4e-22 78.8 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal CsbD PF05532.12 ABA80449.2 - 5.3e-15 55.1 4.6 6.2e-15 54.8 4.6 1.1 1 0 0 1 1 1 1 CsbD-like HisKA_2 PF07568.12 ABA80450.1 - 1e-22 80.0 1.1 2.7e-22 78.6 0.5 2.1 2 0 0 2 2 2 1 Histidine kinase HWE_HK PF07536.14 ABA80450.1 - 1.6e-08 35.1 2.4 3.9e-08 33.9 0.3 2.7 3 0 0 3 3 3 1 HWE histidine kinase HAMP PF00672.25 ABA80450.1 - 1.8e-07 31.4 0.5 6e-07 29.7 0.5 2.0 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 ABA80450.1 - 3.9e-07 30.1 0.0 7.9e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c_2 PF13581.6 ABA80450.1 - 0.056 13.4 0.3 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_6 PF08348.11 ABA80450.1 - 0.072 13.0 0.0 0.36 10.7 0.0 2.0 2 0 0 2 2 2 0 YheO-like PAS domain Sigma70_r2 PF04542.14 ABA80451.1 - 2.9e-16 59.0 0.2 5.2e-16 58.2 0.2 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 ABA80451.1 - 6.2e-12 45.0 0.0 1e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA80451.1 - 2.8e-08 33.1 0.0 4.3e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 ABA80451.1 - 0.0016 18.3 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 ECF sigma factor DUF134 PF02001.16 ABA80451.1 - 0.0061 17.1 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF134 NepR PF18557.1 ABA80452.1 - 4.6e-15 54.9 3.0 5.6e-15 54.7 3.0 1.1 1 0 0 1 1 1 1 Anti-sigma factor NepR SMAP PF15477.6 ABA80452.1 - 0.041 14.9 0.5 0.05 14.6 0.5 1.2 1 0 0 1 1 1 0 Small acidic protein family SPACA7 PF15307.6 ABA80452.1 - 0.062 13.6 0.0 0.067 13.5 0.0 1.2 1 0 0 1 1 1 0 Sperm acrosome-associated protein 7 NACHT_N PF17100.5 ABA80452.1 - 0.12 12.2 0.6 0.13 12.1 0.6 1.0 1 0 0 1 1 1 0 N-terminal domain of NWD NACHT-NTPase Response_reg PF00072.24 ABA80453.1 - 5.7e-14 52.2 0.2 1e-13 51.4 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4_2 PF08281.12 ABA80453.1 - 1e-05 25.1 0.2 2.8e-05 23.7 0.1 1.9 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA80453.1 - 0.015 14.8 0.0 0.051 13.1 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 FleQ PF06490.11 ABA80453.1 - 0.046 14.1 0.0 0.092 13.1 0.0 1.5 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ cNMP_binding PF00027.29 ABA80455.1 - 6.2e-12 45.4 0.0 1e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 ABA80455.1 - 7.3e-09 35.5 0.8 1.3e-08 34.7 0.8 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 ABA80455.1 - 0.057 13.1 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_24 PF13412.6 ABA80455.1 - 0.11 12.1 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GlcNAc_2-epim PF07221.11 ABA80457.2 - 1.4e-111 373.1 9.1 1.7e-111 372.8 9.1 1.1 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_127 PF07944.12 ABA80457.2 - 0.21 10.0 0.1 0.66 8.4 0.1 1.4 1 1 0 1 1 1 0 Beta-L-arabinofuranosidase, GH127 HAD_2 PF13419.6 ABA80458.1 - 2.9e-29 102.4 0.0 3.4e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA80458.1 - 9.5e-24 84.8 0.1 1.2e-23 84.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA80458.1 - 6e-13 49.6 0.1 8.7e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA80458.1 - 3.5e-06 27.0 0.0 6.8e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 ABA80458.1 - 2.9e-05 24.1 0.0 0.026 14.6 0.0 2.5 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 ABA80458.1 - 0.00091 19.0 0.0 0.083 12.6 0.0 2.7 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 ABA80459.1 - 1.5e-27 96.8 0.0 1.8e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA80459.1 - 1.1e-21 78.1 0.2 3.5e-21 76.5 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA80459.1 - 4.5e-10 40.2 0.9 6.8e-10 39.7 0.8 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 ABA80459.1 - 2.7e-06 27.3 0.0 1e-05 25.5 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like AAA_lid_6 PF17866.1 ABA80460.2 - 2e-16 59.9 0.9 7e-16 58.2 0.9 2.0 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 ABA80460.2 - 2.2e-16 60.5 0.0 3.9e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA80460.2 - 1e-05 25.8 0.2 0.16 12.2 0.1 2.5 1 1 0 2 2 2 2 AAA domain AAA_5 PF07728.14 ABA80460.2 - 4.3e-05 23.5 0.1 9.5e-05 22.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 ABA80460.2 - 0.0005 20.0 0.2 0.0009 19.2 0.2 1.5 1 1 0 1 1 1 1 NTPase Mg_chelatase PF01078.21 ABA80460.2 - 0.00065 19.1 0.6 0.064 12.6 0.4 2.2 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.9 ABA80460.2 - 0.016 14.5 0.4 0.077 12.2 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 ABA80460.2 - 0.023 14.4 0.8 0.17 11.6 0.8 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Zot PF05707.12 ABA80460.2 - 0.027 14.1 0.1 7 6.2 0.0 2.2 1 1 1 2 2 2 0 Zonular occludens toxin (Zot) AAA_19 PF13245.6 ABA80460.2 - 0.03 14.7 0.1 0.069 13.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA80460.2 - 0.035 13.8 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 ABA80460.2 - 0.04 14.0 0.0 0.073 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 ABA80460.2 - 0.045 14.1 0.5 0.11 12.9 0.1 1.9 2 1 0 2 2 2 0 AAA ATPase domain Sigma54_activat PF00158.26 ABA80460.2 - 0.045 13.4 0.1 1.2 8.8 0.1 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain ResIII PF04851.15 ABA80460.2 - 0.048 13.7 0.0 0.2 11.7 0.0 2.0 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Torsin PF06309.11 ABA80460.2 - 0.051 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Torsin TrwB_AAD_bind PF10412.9 ABA80460.2 - 0.063 12.2 0.1 0.097 11.6 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 ABA80460.2 - 0.067 13.3 0.2 0.14 12.3 0.2 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 ABA80460.2 - 0.09 12.9 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA80460.2 - 0.13 12.8 0.9 0.93 10.0 0.6 2.5 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 ABA80460.2 - 0.15 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_11 PF13086.6 ABA80460.2 - 0.19 11.5 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 ABA80460.2 - 0.19 11.1 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 ABA80460.2 - 0.2 11.9 1.1 1.4 9.1 0.1 2.7 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 ABA80460.2 - 0.27 10.7 0.3 0.71 9.4 0.3 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region RuBisCO_small PF00101.20 ABA80461.1 - 8.1e-40 134.7 0.0 9.7e-40 134.5 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase, small chain RuBisCO_large PF00016.20 ABA80462.1 - 4.1e-134 446.5 0.2 5e-134 446.2 0.2 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 ABA80462.1 - 2.5e-44 150.3 0.0 5.5e-44 149.2 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain F_bP_aldolase PF01116.20 ABA80463.1 - 3.2e-87 292.6 0.1 4.1e-87 292.2 0.1 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II CoA_binding_3 PF13727.6 ABA80463.1 - 0.16 11.9 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 CoA-binding domain PRK PF00485.18 ABA80464.1 - 1.2e-79 266.7 0.2 1.5e-79 266.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 ABA80464.1 - 0.0088 15.9 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 ABA80464.1 - 0.07 12.4 0.0 0.25 10.6 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin FBPase PF00316.20 ABA80465.1 - 2.7e-42 144.4 0.1 3.5e-42 144.0 0.1 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain LysR_substrate PF03466.20 ABA80466.1 - 7.3e-43 146.4 5.4 1.2e-42 145.7 5.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80466.1 - 1.7e-15 56.7 0.1 3.4e-15 55.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 ABA80466.1 - 0.0027 16.9 0.0 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain HTH_24 PF13412.6 ABA80466.1 - 0.029 13.9 0.0 0.076 12.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ABC_tran PF00005.27 ABA80467.1 - 3.1e-30 105.5 0.0 4e-30 105.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80467.1 - 2.4e-08 34.2 0.2 0.0007 19.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80467.1 - 0.0011 18.4 0.2 0.028 13.9 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80467.1 - 0.0013 19.3 0.0 0.0019 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 ABA80467.1 - 0.0013 18.4 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA80467.1 - 0.0014 18.9 0.3 0.0051 17.1 0.3 1.8 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 ABA80467.1 - 0.0024 16.7 1.2 0.26 10.0 0.1 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 ABA80467.1 - 0.0053 16.5 0.1 0.0093 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA80467.1 - 0.0055 16.4 1.7 0.013 15.3 1.7 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA80467.1 - 0.017 15.0 0.1 0.039 13.9 0.1 1.5 2 0 0 2 2 1 0 RsgA GTPase NACHT PF05729.12 ABA80467.1 - 0.039 13.9 0.2 0.072 13.0 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.6 ABA80467.1 - 0.04 13.6 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 ABA80467.1 - 0.042 13.4 1.9 0.046 13.3 0.5 1.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 ABA80467.1 - 0.055 13.5 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase TsaE PF02367.17 ABA80467.1 - 0.065 13.2 0.2 0.14 12.2 0.2 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 ABA80467.1 - 0.066 12.8 0.2 0.25 10.9 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 ABA80467.1 - 0.097 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 ABA80467.1 - 0.1 11.5 1.1 0.54 9.1 0.4 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 ABA80467.1 - 0.13 11.3 1.0 1.3 8.0 0.1 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein SbcCD_C PF13558.6 ABA80467.1 - 0.14 12.4 0.1 1.4 9.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 ABA80467.1 - 0.38 9.4 0.1 1.3 7.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 ABA80467.1 - 0.38 8.2 0.3 0.56 7.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 ABA80468.1 - 3.4e-30 105.3 0.0 4.7e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 ABA80468.1 - 3.9e-10 39.4 0.6 7.1e-10 38.6 0.6 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 ABA80468.1 - 1.8e-08 34.6 1.0 0.004 17.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA80468.1 - 6.5e-05 23.4 0.2 8.7e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA80468.1 - 0.00023 20.8 0.1 0.00053 19.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA80468.1 - 0.00096 19.1 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 ABA80468.1 - 0.002 17.6 0.2 0.27 10.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80468.1 - 0.0033 18.0 0.0 0.0045 17.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA80468.1 - 0.011 16.1 0.0 0.024 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 ABA80468.1 - 0.038 13.6 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA80468.1 - 0.04 13.6 1.0 0.98 9.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain RTC4 PF14474.6 ABA80468.1 - 0.064 13.4 0.0 0.098 12.8 0.0 1.3 1 0 0 1 1 1 0 RTC4-like domain MMR_HSR1 PF01926.23 ABA80468.1 - 0.073 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 ABA80468.1 - 0.084 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Ploopntkinase1 PF18748.1 ABA80468.1 - 0.1 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 AAA_5 PF07728.14 ABA80468.1 - 0.14 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 ABA80468.1 - 0.25 11.0 0.0 0.36 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.16 ABA80469.1 - 1e-41 142.9 38.2 1.7e-41 142.2 38.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA80470.1 - 9.2e-38 129.9 32.3 1.2e-37 129.6 32.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 ABA80471.1 - 9.8e-49 166.8 0.2 1.2e-48 166.6 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 ABA80471.1 - 8.9e-14 51.2 0.0 5.7e-13 48.6 0.0 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 ABA80471.1 - 5.4e-06 25.8 0.0 7.4e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 ABA80471.1 - 0.025 14.4 2.1 0.076 12.9 2.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2478 PF10649.9 ABA80472.1 - 8e-46 155.5 0.5 1.1e-45 155.1 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) Aldedh PF00171.22 ABA80473.1 - 7.9e-125 417.0 0.0 9e-125 416.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Acyl_transf_1 PF00698.21 ABA80474.1 - 0.00049 19.7 0.6 0.00073 19.1 0.6 1.7 1 1 0 1 1 1 1 Acyl transferase domain E1_dh PF00676.20 ABA80475.1 - 2.1e-28 99.2 0.0 2.8e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Transket_pyr PF02779.24 ABA80475.1 - 5.5e-27 94.6 0.2 2.7e-26 92.3 0.0 2.2 3 0 0 3 3 3 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 ABA80475.1 - 2.2e-13 50.2 0.0 4.5e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 ABA80475.1 - 6.3e-05 23.2 0.0 0.00031 21.0 0.0 2.1 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II LprI PF07007.12 ABA80475.1 - 0.047 14.3 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 Lysozyme inhibitor LprI Acyl-CoA_dh_N PF02771.16 ABA80476.1 - 1.8e-36 125.2 0.2 4.5e-36 123.9 0.2 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 ABA80476.1 - 7e-26 91.2 2.4 1.2e-25 90.5 2.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 ABA80476.1 - 1.7e-21 76.2 0.1 2.8e-21 75.5 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 ABA80476.1 - 3.2e-06 27.4 3.8 1.4e-05 25.3 3.8 2.1 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 ABA80476.1 - 0.045 13.4 0.0 0.077 12.6 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal LysR_substrate PF03466.20 ABA80477.1 - 3.2e-39 134.5 4.5 3.2e-39 134.5 4.5 1.9 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80477.1 - 2.1e-17 62.8 4.6 3.7e-17 62.0 4.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 ABA80477.1 - 0.0022 18.1 2.5 0.005 16.9 0.1 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA80477.1 - 0.012 15.5 0.2 0.03 14.2 0.2 1.8 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 ABA80477.1 - 0.013 15.3 0.5 0.013 15.3 0.5 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain YdaS_antitoxin PF15943.5 ABA80477.1 - 0.17 11.8 0.1 0.45 10.4 0.1 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF72 PF01904.18 ABA80477.1 - 0.49 10.5 3.3 4.3 7.4 2.0 2.5 1 1 0 1 1 1 0 Protein of unknown function DUF72 Amidohydro_1 PF01979.20 ABA80478.1 - 1.3e-19 70.8 0.1 1.7e-19 70.3 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 ABA80478.1 - 8.4e-07 28.8 0.2 3.1e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase family TPR_19 PF14559.6 ABA80479.1 - 1.6e-05 25.3 15.4 0.0041 17.6 0.0 5.6 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_14 PF13428.6 ABA80479.1 - 1.9e-05 25.1 21.6 0.49 11.4 0.5 7.4 4 2 3 7 7 7 4 Tetratricopeptide repeat TPR_2 PF07719.17 ABA80479.1 - 0.0014 18.6 6.4 4.1 7.8 0.0 5.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 ABA80479.1 - 0.008 16.1 1.6 21 5.4 0.0 4.4 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_17 PF13431.6 ABA80479.1 - 0.012 16.0 0.1 0.35 11.3 0.1 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat Trans_reg_C PF00486.28 ABA80479.1 - 0.018 15.1 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal Fis1_TPR_C PF14853.6 ABA80479.1 - 0.13 12.3 0.3 0.99 9.5 0.1 2.4 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_1 PF00515.28 ABA80479.1 - 0.59 10.0 3.1 23 5.0 0.0 3.9 5 0 0 5 5 5 0 Tetratricopeptide repeat PAP2 PF01569.21 ABA80480.1 - 1.2e-05 25.1 0.0 3.8e-05 23.5 0.0 1.8 1 1 0 1 1 1 1 PAP2 superfamily Peptidase_S8 PF00082.22 ABA80481.1 - 1.8e-18 66.9 0.0 1.1e-08 34.7 0.0 2.6 2 1 0 2 2 2 2 Subtilase family MarR_2 PF12802.7 ABA80482.1 - 0.0085 16.0 4.3 0.018 14.9 0.1 3.2 3 1 0 3 3 3 1 MarR family Crp PF00325.20 ABA80482.1 - 0.04 13.6 0.0 3.5 7.4 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_IclR PF09339.10 ABA80482.1 - 0.19 11.6 3.8 0.36 10.7 0.1 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain MotB_plug PF13677.6 ABA80483.2 - 4.5e-19 67.8 0.1 8e-19 67.0 0.1 1.4 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 ABA80483.2 - 6.1e-05 23.3 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 OmpA family Flg_bbr_C PF06429.13 ABA80484.1 - 6.3e-15 55.1 0.1 1.5e-14 53.9 0.1 1.7 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA80484.1 - 1.6e-07 31.1 5.0 1.6e-07 31.1 5.0 2.5 2 0 0 2 2 2 1 Flagella basal body rod protein FlaE PF07559.14 ABA80484.1 - 0.00034 21.2 3.3 0.0012 19.4 0.5 2.5 2 1 1 3 3 3 1 Flagellar basal body protein FlaE Flg_bbr_C PF06429.13 ABA80485.1 - 5.3e-08 32.9 0.1 2e-07 31.1 0.1 2.1 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flagellin_C PF00700.21 ABA80486.1 - 5.7e-08 33.0 3.0 1.7e-07 31.5 3.0 1.8 1 0 0 1 1 1 1 Bacterial flagellin C-terminal helical region Flagellin_N PF00669.20 ABA80486.1 - 0.01 16.0 9.5 0.01 16.0 9.5 2.6 2 1 0 2 2 2 0 Bacterial flagellin N-terminal helical region FlgI PF02119.16 ABA80487.1 - 3.8e-133 443.7 1.5 4.3e-133 443.5 1.5 1.0 1 0 0 1 1 1 1 Flagellar P-ring protein BtrH_N PF14399.6 ABA80487.1 - 0.014 15.6 0.0 2.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Butirosin biosynthesis protein H, N-terminal PAS_4 PF08448.10 ABA80488.1 - 3.2e-38 130.4 11.9 1.2e-13 51.3 0.1 4.2 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.24 ABA80488.1 - 3.1e-30 104.6 0.0 2.2e-15 56.8 0.0 2.5 2 0 0 2 2 2 2 Response regulator receiver domain PAS_9 PF13426.7 ABA80488.1 - 2.6e-23 82.2 0.0 3.6e-09 36.8 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 ABA80488.1 - 5.1e-20 71.6 0.2 9.6e-06 25.6 0.0 3.8 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.26 ABA80488.1 - 1e-18 67.9 0.0 1.9e-18 67.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 ABA80488.1 - 1.6e-17 63.6 0.1 4.9e-14 52.4 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 ABA80488.1 - 1.8e-11 43.7 1.6 0.0057 16.7 0.2 3.8 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 ABA80488.1 - 0.00015 21.7 2.8 0.00068 19.6 0.4 3.2 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain FleQ PF06490.11 ABA80488.1 - 0.007 16.7 0.0 0.62 10.5 0.0 2.4 2 0 0 2 2 2 1 Flagellar regulatory protein FleQ PAS_10 PF13596.6 ABA80488.1 - 0.028 15.0 0.0 2.3 8.8 0.0 3.0 3 0 0 3 3 3 0 PAS domain DUF3322 PF11795.8 ABA80488.1 - 0.26 11.3 3.7 0.8 9.7 2.5 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) SPOB_a PF14689.6 ABA80488.1 - 2.1 8.1 3.9 0.6 9.9 0.2 2.1 2 1 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HTH_13 PF11972.8 ABA80489.2 - 7.9e-06 25.8 0.3 2.3e-05 24.3 0.3 1.8 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 ABA80489.2 - 4.2e-05 23.3 1.7 4.2e-05 23.3 1.7 3.1 3 1 0 3 3 3 2 MarR family HTH_20 PF12840.7 ABA80489.2 - 0.038 14.1 9.2 0.62 10.2 1.0 3.0 2 2 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 ABA80489.2 - 0.15 11.7 0.2 0.96 9.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FliP PF00813.20 ABA80490.2 - 3.7e-69 232.4 10.1 4.4e-69 232.2 10.1 1.0 1 0 0 1 1 1 1 FliP family Motilin_ghrelin PF04644.12 ABA80490.2 - 0.11 12.3 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Motilin/ghrelin FliMN_C PF01052.20 ABA80491.1 - 3.3e-24 84.7 0.4 3.7e-24 84.5 0.4 1.1 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term Yae1_N PF09811.9 ABA80492.1 - 0.04 13.6 0.1 0.072 12.8 0.1 1.5 1 0 0 1 1 1 0 Essential protein Yae1, N terminal YscJ_FliF PF01514.17 ABA80493.2 - 3.3e-50 170.5 0.0 5.2e-50 169.8 0.0 1.3 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family YscJ_FliF_C PF08345.11 ABA80493.2 - 1.3e-34 119.7 4.1 2.9e-34 118.6 0.3 2.4 3 0 0 3 3 3 1 Flagellar M-ring protein C-terminal PGC7_Stella PF15549.6 ABA80493.2 - 0.18 11.8 0.3 0.35 10.8 0.3 1.4 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain FliL PF03748.14 ABA80494.1 - 9.5e-13 48.6 0.0 1.3e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Flagellar basal body-associated protein FliL MgtE_N PF03448.17 ABA80496.1 - 2e-05 25.1 1.7 7.5e-05 23.3 0.0 2.0 1 1 0 2 2 2 1 MgtE intracellular N domain DUF3552 PF12072.8 ABA80496.1 - 0.00052 19.5 3.0 0.00088 18.7 3.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) Spc7 PF08317.11 ABA80496.1 - 0.0013 17.6 1.2 0.0017 17.3 1.2 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Fez1 PF06818.15 ABA80496.1 - 0.011 16.2 0.6 0.013 16.0 0.6 1.1 1 0 0 1 1 1 0 Fez1 Lebercilin PF15619.6 ABA80496.1 - 0.019 14.6 4.0 0.025 14.2 4.0 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Atg14 PF10186.9 ABA80496.1 - 0.032 13.3 0.0 0.035 13.2 0.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FANCI_S4 PF14678.6 ABA80496.1 - 0.09 11.9 0.1 0.12 11.5 0.1 1.1 1 0 0 1 1 1 0 FANCI solenoid 4 DUF3584 PF12128.8 ABA80496.1 - 0.12 9.9 5.3 0.15 9.6 5.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) KfrA_N PF11740.8 ABA80496.1 - 0.16 12.7 11.7 0.33 11.6 11.7 1.5 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term MotA_ExbB PF01618.16 ABA80497.1 - 6.7e-14 51.7 0.0 1.1e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family Yip1 PF04893.17 ABA80497.1 - 0.0051 16.6 1.6 0.14 11.9 0.0 2.1 2 0 0 2 2 2 2 Yip1 domain TPR_19 PF14559.6 ABA80498.1 - 2.5 8.7 5.9 3.4 8.3 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat SLT PF01464.20 ABA80499.1 - 1.5e-06 27.8 0.0 1.4e-05 24.7 0.0 2.0 1 1 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 ABA80499.1 - 0.0022 18.4 0.0 0.003 18.0 0.0 1.3 1 0 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FHIPEP PF00771.20 ABA80500.1 - 4e-211 703.0 0.1 4.6e-211 702.8 0.1 1.0 1 0 0 1 1 1 1 FHIPEP family CRF PF00473.17 ABA80500.1 - 0.23 11.6 4.3 0.29 11.2 0.2 2.8 2 0 0 2 2 2 0 Corticotropin-releasing factor family Bac_export_1 PF01311.20 ABA80501.1 - 1.1e-46 159.3 26.2 1.3e-46 159.0 26.2 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Saf_2TM PF18303.1 ABA80501.1 - 5.1 6.7 6.9 1.9 8.1 1.0 2.2 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain Bac_export_2 PF01312.19 ABA80502.1 - 1.6e-106 356.3 0.1 1.8e-106 356.1 0.1 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family 7tm_7 PF08395.12 ABA80502.1 - 0.0032 16.7 0.1 0.0042 16.4 0.1 1.1 1 0 0 1 1 1 1 7tm Chemosensory receptor TetR_C_22 PF17928.1 ABA80502.1 - 0.07 13.5 0.8 0.19 12.1 0.2 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain RST PF12174.8 ABA80502.1 - 0.14 12.1 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain RHH_1 PF01402.21 ABA80502.1 - 2.1 8.4 5.0 64 3.7 0.4 3.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF3035 PF11233.8 ABA80503.1 - 0.1 12.9 1.2 0.13 12.6 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) FlgH PF02107.16 ABA80505.1 - 3.6e-52 176.4 0.0 4.2e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 Flagellar L-ring protein Baculo_LEF-10 PF07206.11 ABA80505.1 - 0.098 12.8 0.1 0.18 12.0 0.1 1.3 1 0 0 1 1 1 0 Baculovirus late expression factor 10 (LEF-10) ChapFlgA PF13144.6 ABA80506.1 - 8.4e-24 84.0 0.0 9.5e-24 83.8 0.0 1.0 1 0 0 1 1 1 1 Chaperone for flagella basal body P-ring formation SAF PF08666.12 ABA80506.1 - 1.5e-06 28.8 0.1 2.2e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 SAF domain Flg_bbr_C PF06429.13 ABA80507.1 - 1.5e-24 86.0 0.1 4.4e-24 84.4 0.1 1.9 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA80507.1 - 8.7e-14 51.1 3.0 3.7e-13 49.1 2.8 2.2 2 0 0 2 2 2 1 Flagella basal body rod protein Flg_bbr_C PF06429.13 ABA80508.1 - 1.1e-14 54.4 0.0 2.8e-14 53.0 0.0 1.7 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA80508.1 - 8.1e-05 22.5 0.0 0.0002 21.2 0.0 1.7 1 0 0 1 1 1 1 Flagella basal body rod protein Bac_export_3 PF01313.19 ABA80509.1 - 1e-23 83.0 10.4 1.2e-23 82.8 10.4 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 3 EI24 PF07264.11 ABA80509.1 - 0.022 15.0 5.4 0.025 14.8 5.4 1.0 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Bacillus_PapR PF05968.11 ABA80509.1 - 0.14 12.1 0.5 0.14 12.1 0.5 1.6 2 0 0 2 2 2 0 Bacillus PapR protein FliE PF02049.18 ABA80510.1 - 3.9e-18 65.4 1.7 4.6e-18 65.1 1.7 1.0 1 0 0 1 1 1 1 Flagellar hook-basal body complex protein FliE FliX PF10768.9 ABA80510.1 - 0.019 15.5 2.6 0.02 15.4 2.3 1.3 1 1 0 1 1 1 0 Class II flagellar assembly regulator LpxK PF02606.14 ABA80510.1 - 0.05 12.7 0.6 0.057 12.5 0.6 1.0 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase PG_binding_3 PF09374.10 ABA80510.1 - 0.1 12.9 0.5 0.2 12.0 0.1 1.7 1 1 1 2 2 2 0 Predicted Peptidoglycan domain Flg_bbr_C PF06429.13 ABA80511.2 - 1.1e-11 44.7 0.0 1.6e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 ABA80511.2 - 1.5e-05 24.8 0.0 2.9e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Flagella basal body rod protein Flagellin_C PF00700.21 ABA80511.2 - 0.029 14.7 2.5 0.059 13.7 0.4 2.0 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region Flg_bb_rod PF00460.20 ABA80512.1 - 8.6e-06 25.6 0.0 3.2e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Flagella basal body rod protein LEA_6 PF10714.9 ABA80512.1 - 0.12 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Late embryogenesis abundant protein 18 ATP-synt_ab PF00006.25 ABA80513.1 - 1.9e-62 210.7 0.0 2.5e-62 210.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 ABA80513.1 - 9.6e-12 44.6 0.0 1.6e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain AAA_16 PF13191.6 ABA80513.1 - 0.015 15.7 0.2 0.04 14.3 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 ABA80513.1 - 0.038 13.9 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Rod-binding PF10135.9 ABA80515.1 - 3.3e-08 34.0 0.5 4.9e-08 33.4 0.5 1.3 1 0 0 1 1 1 1 Rod binding protein KRE1 PF17056.5 ABA80515.1 - 0.046 13.5 4.0 1.1 9.1 0.2 2.2 1 1 1 2 2 2 0 Killer toxin-resistance protein 1 Flg_hook PF02120.16 ABA80516.2 - 1.4e-13 50.5 0.1 2.1e-13 50.0 0.1 1.3 1 1 0 1 1 1 1 Flagellar hook-length control protein FliK FlgD PF03963.14 ABA80517.1 - 3.1e-20 72.3 3.6 4.6e-20 71.7 3.6 1.2 1 0 0 1 1 1 1 Flagellar hook capping protein - N-terminal region FlgD_ig PF13860.6 ABA80517.1 - 4e-12 45.8 0.1 9.8e-12 44.6 0.1 1.6 1 0 0 1 1 1 1 FlgD Ig-like domain DUF2271 PF10029.9 ABA80517.1 - 0.03 13.9 0.0 0.03 13.9 0.0 1.8 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2271) CHU_C PF13585.6 ABA80517.1 - 0.076 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain of CHU protein family FLgD_tudor PF13861.6 ABA80517.1 - 0.078 13.2 0.0 0.18 12.1 0.0 1.6 1 1 0 1 1 1 0 FlgD Tudor-like domain Alkyl_sulf_dimr PF14863.6 ABA80517.1 - 0.19 12.2 0.1 0.45 11.0 0.0 1.6 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation ABC1 PF03109.16 ABA80518.2 - 4.1e-30 104.4 0.0 8e-30 103.5 0.0 1.5 1 0 0 1 1 1 1 ABC1 family Ubie_methyltran PF01209.18 ABA80519.1 - 2.8e-91 305.0 0.0 3.3e-91 304.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 ABA80519.1 - 5.3e-20 71.9 0.1 1.6e-19 70.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA80519.1 - 3.7e-18 66.0 0.1 9.1e-18 64.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA80519.1 - 2.2e-13 50.3 0.0 2.7e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA80519.1 - 5e-13 49.6 0.0 7.5e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA80519.1 - 3e-09 36.9 0.0 4.8e-09 36.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 ABA80519.1 - 1e-05 25.1 0.0 2.6e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 ABA80519.1 - 1.7e-05 24.2 0.0 2.2e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_5 PF01795.19 ABA80519.1 - 8.4e-05 22.2 0.0 0.054 13.0 0.0 2.1 1 1 1 2 2 2 2 MraW methylase family Methyltransf_8 PF05148.15 ABA80519.1 - 0.00012 22.0 0.0 0.00088 19.2 0.0 2.1 2 1 0 2 2 2 1 Hypothetical methyltransferase ADH_zinc_N PF00107.26 ABA80519.1 - 0.094 12.7 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 ABA80519.1 - 0.11 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 ABA80519.1 - 0.15 11.1 0.0 0.2 10.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.19 ABA80519.1 - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fapy_DNA_glyco PF01149.24 ABA80520.1 - 5.6e-35 120.4 0.1 8.8e-35 119.8 0.1 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 ABA80520.1 - 1.7e-26 92.0 0.0 3.2e-26 91.1 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 ABA80520.1 - 0.00046 20.0 3.2 0.00086 19.1 3.2 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Head-tail_con PF12236.8 ABA80520.1 - 0.13 10.7 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage head to tail connecting protein ECH_1 PF00378.20 ABA80521.1 - 8.3e-81 271.0 1.1 9.2e-81 270.8 1.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 ABA80521.1 - 4.9e-38 131.5 3.9 8.1e-35 120.9 0.9 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 ABA80521.1 - 0.004 17.1 0.1 0.49 10.3 0.0 2.3 2 0 0 2 2 2 2 Peptidase family S49 Ribosomal_S20p PF01649.18 ABA80522.1 - 9e-24 83.9 9.7 1e-23 83.8 9.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 Bac_DnaA PF00308.18 ABA80523.1 - 1e-86 290.4 0.0 1.8e-86 289.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 ABA80523.1 - 1.8e-30 104.8 0.1 3.1e-30 104.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein helix-turn-helix DnaA_N PF11638.8 ABA80523.1 - 1.2e-17 63.4 0.0 2.5e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 DnaA N-terminal domain IstB_IS21 PF01695.17 ABA80523.1 - 1.4e-09 37.9 0.0 2.5e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 ABA80523.1 - 1e-06 29.2 0.0 1.8e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AFG1_ATPase PF03969.16 ABA80523.1 - 9.7e-06 24.7 1.7 0.0076 15.2 0.3 2.2 1 1 1 2 2 2 2 AFG1-like ATPase AAA_16 PF13191.6 ABA80523.1 - 1.1e-05 25.9 2.1 2e-05 25.0 0.1 2.4 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 ABA80523.1 - 0.0006 19.8 0.0 0.0019 18.1 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 ABA80523.1 - 0.00076 19.8 1.8 1.7 8.9 0.0 3.4 2 1 1 3 3 3 2 AAA domain AAA_14 PF13173.6 ABA80523.1 - 0.0025 17.8 0.0 0.0047 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 ABA80523.1 - 0.0028 17.6 0.0 0.0068 16.3 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RuvB_N PF05496.12 ABA80523.1 - 0.011 15.5 0.0 0.024 14.4 0.0 1.6 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 ABA80523.1 - 0.028 14.4 0.0 0.094 12.7 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 ABA80523.1 - 0.042 14.2 0.1 0.22 11.9 0.1 2.1 1 1 0 1 1 1 0 RNA helicase Ku PF02735.16 ABA80523.1 - 0.059 13.1 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 Ku70/Ku80 beta-barrel domain DNA_pol3_beta PF00712.19 ABA80524.1 - 1.3e-36 125.4 0.1 7.1e-31 106.9 0.0 3.2 3 0 0 3 3 3 3 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_2 PF02767.16 ABA80524.1 - 5.9e-34 116.8 0.2 1.2e-29 102.8 0.0 2.9 3 1 0 3 3 3 2 DNA polymerase III beta subunit, central domain DNA_pol3_beta_3 PF02768.15 ABA80524.1 - 1.8e-32 111.7 1.1 8.6e-32 109.5 0.1 2.3 2 0 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain SMC_N PF02463.19 ABA80525.2 - 5.4e-16 58.7 0.0 8.3e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA80525.2 - 2.8e-11 43.8 0.0 3.3e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 ABA80525.2 - 1.3e-05 25.9 0.0 1.9e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA80525.2 - 1.7e-05 24.7 0.0 0.00037 20.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 ABA80525.2 - 0.00019 21.9 0.1 0.0039 17.7 0.0 2.4 2 1 0 2 2 2 1 ABC transporter AAA_29 PF13555.6 ABA80525.2 - 0.015 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 ABA80525.2 - 0.025 14.8 0.2 0.055 13.7 0.2 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Glyoxalase PF00903.25 ABA80526.1 - 6.7e-10 39.2 0.0 8.4e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 ABA80526.1 - 3e-07 31.2 2.0 4.3e-07 30.7 2.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 ABA80526.1 - 0.12 12.3 0.0 0.28 11.1 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase-like domain TPR_4 PF07721.14 ABA80526.1 - 3.5 8.5 8.6 0.34 11.7 3.2 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat DNA_gyraseB PF00204.25 ABA80527.1 - 4.3e-57 192.4 0.0 6.5e-57 191.8 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 ABA80527.1 - 1.4e-29 102.0 0.1 3.2e-29 100.9 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 ABA80527.1 - 5.2e-22 78.5 0.1 9.5e-22 77.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 ABA80527.1 - 3.5e-17 62.5 0.0 8.1e-17 61.3 0.0 1.7 1 0 0 1 1 1 1 Toprim domain GyrB_insert PF18053.1 ABA80527.1 - 2.8e-06 27.3 0.0 5.1e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 DNA gyrase B subunit insert domain HATPase_c_3 PF13589.6 ABA80527.1 - 0.0013 18.6 0.1 0.0024 17.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tox-PL-2 PF15643.6 ABA80527.1 - 0.069 13.3 0.2 0.46 10.6 0.0 2.2 2 0 0 2 2 2 0 Papain fold toxin 2 ARGLU PF15346.6 ABA80527.1 - 2.2 8.2 3.9 3.6 7.4 2.0 2.0 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 DUF2254 PF10011.9 ABA80528.1 - 8.5e-88 294.6 0.2 9.9e-88 294.4 0.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) AFG1_ATPase PF03969.16 ABA80529.1 - 1.3e-114 382.9 0.0 1.4e-114 382.8 0.0 1.0 1 0 0 1 1 1 1 AFG1-like ATPase IstB_IS21 PF01695.17 ABA80529.1 - 0.00019 21.2 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein Bac_DnaA PF00308.18 ABA80529.1 - 0.00082 19.3 0.0 0.3 10.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial dnaA protein AAA_22 PF13401.6 ABA80529.1 - 0.064 13.5 0.5 3.9 7.7 0.1 3.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 ABA80529.1 - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA80529.1 - 0.19 12.1 0.0 1.4 9.4 0.0 2.2 2 1 0 2 2 2 0 RNA helicase HAD PF12710.7 ABA80530.1 - 1.3e-18 68.1 0.2 1.7e-18 67.7 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 ABA80530.1 - 1.5e-13 51.6 1.1 2.6e-13 50.7 1.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 ABA80530.1 - 6.2e-10 39.2 0.3 2.3e-09 37.4 0.2 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 ABA80530.1 - 0.00092 19.3 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 ABA80530.1 - 0.016 14.7 0.1 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Aminotran_5 PF00266.19 ABA80531.1 - 9.6e-07 28.1 0.0 1.2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V 2-Hacid_dh_C PF02826.19 ABA80532.1 - 8.5e-63 210.9 0.0 1.5e-62 210.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA80532.1 - 1.7e-37 128.1 0.0 6.8e-37 126.1 0.0 2.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 ABA80532.1 - 0.0003 21.0 0.1 0.0009 19.4 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.25 ABA80532.1 - 0.0013 18.5 0.0 0.0068 16.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain F420_oxidored PF03807.17 ABA80532.1 - 0.0088 16.6 0.1 0.024 15.2 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 ABA80532.1 - 0.01 15.4 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain UPF0020 PF01170.18 ABA80532.1 - 0.03 14.0 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Metallophos PF00149.28 ABA80533.1 - 1.1e-12 48.9 0.3 2.3e-12 47.8 0.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 ABA80533.1 - 7.1e-05 23.1 0.4 0.00022 21.5 0.4 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FBPase_2 PF06874.11 ABA80533.1 - 0.25 9.6 0.1 0.39 9.0 0.1 1.1 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase Thiolase_N PF00108.23 ABA80534.1 - 2.9e-86 289.0 0.5 4e-86 288.6 0.5 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 ABA80534.1 - 8.6e-44 148.1 0.9 8.6e-44 148.1 0.9 2.2 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 ABA80534.1 - 0.00027 20.6 7.3 0.00058 19.5 3.4 2.8 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 ABA80534.1 - 0.17 11.8 2.6 2.3 8.1 0.3 2.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Transgly PF00912.22 ABA80535.1 - 4.5e-44 150.0 0.0 6.6e-44 149.5 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 ABA80535.1 - 1.5e-19 70.3 0.0 2.5e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain BiPBP_C PF06832.12 ABA80535.1 - 3.5e-14 52.6 0.1 1.4e-13 50.7 0.1 2.1 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family bMG5 PF17972.1 ABA80536.1 - 3.1e-36 124.5 0.5 2.6e-35 121.5 0.0 2.8 3 0 0 3 3 3 1 Bacterial Alpha-2-macroglobulin MG5 domain bMG3 PF11974.8 ABA80536.1 - 3.5e-30 104.1 0.2 8.3e-28 96.4 0.1 2.8 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain bMG6 PF17962.1 ABA80536.1 - 9.3e-29 99.9 2.0 4.2e-28 97.8 0.7 2.7 3 0 0 3 3 3 1 Bacterial macroglobulin domain 6 bMG10 PF17973.1 ABA80536.1 - 1.2e-26 93.4 0.1 3.9e-26 91.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial Alpha-2-macroglobulin MG10 domain MG2 PF01835.19 ABA80536.1 - 1.9e-21 76.3 0.0 5.3e-15 55.7 0.0 4.5 5 0 0 5 5 4 2 MG2 domain A2M_BRD PF07703.14 ABA80536.1 - 6.4e-14 52.5 0.1 5e-13 49.6 0.0 2.5 3 0 0 3 3 3 1 Alpha-2-macroglobulin bait region domain A2M PF00207.22 ABA80536.1 - 4.2e-07 29.7 0.0 1.1e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Alpha-2-macroglobulin family TED_complement PF07678.14 ABA80536.1 - 7e-06 25.3 0.0 1.2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 A-macroglobulin TED domain PAN_1 PF00024.26 ABA80536.1 - 8.9e-06 25.6 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 PAN domain PAN_4 PF14295.6 ABA80536.1 - 3.3e-05 23.7 0.2 6.4e-05 22.8 0.2 1.4 1 0 0 1 1 1 1 PAN domain PAN_2 PF08276.11 ABA80536.1 - 0.005 16.9 0.1 0.01 16.0 0.1 1.4 1 0 0 1 1 1 1 PAN-like domain CarboxypepD_reg PF13620.6 ABA80536.1 - 0.48 10.7 6.1 1.2 9.5 0.2 4.5 5 0 0 5 5 4 0 Carboxypeptidase regulatory-like domain Response_reg PF00072.24 ABA80537.1 - 5e-36 123.3 0.0 2.3e-20 72.8 0.1 2.4 2 0 0 2 2 2 2 Response regulator receiver domain PAS_7 PF12860.7 ABA80537.1 - 1.7e-35 121.7 0.0 7.2e-22 77.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 ABA80537.1 - 1.6e-31 109.1 0.0 3.6e-31 108.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA80537.1 - 5.2e-19 68.1 1.5 1.9e-18 66.2 0.0 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 ABA80537.1 - 1.3e-08 34.7 0.0 0.00041 20.3 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 ABA80537.1 - 1.8e-05 24.9 0.7 0.16 12.2 0.2 3.0 2 1 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.6 ABA80537.1 - 0.055 13.3 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HR1 PF02185.16 ABA80537.1 - 0.34 11.0 3.8 0.94 9.6 3.8 1.8 1 0 0 1 1 1 0 Hr1 repeat H2O2_YaaD PF03883.14 ABA80538.1 - 5.4e-81 271.5 0.0 6.1e-81 271.4 0.0 1.0 1 0 0 1 1 1 1 Peroxide stress protein YaaA hNIFK_binding PF12196.8 ABA80538.1 - 0.19 11.2 0.0 0.37 10.3 0.0 1.4 1 0 0 1 1 1 0 FHA Ki67 binding domain of hNIFK HRDC PF00570.23 ABA80539.1 - 6.7e-35 118.9 0.3 7.7e-21 73.9 0.0 2.6 2 0 0 2 2 2 2 HRDC domain RQC PF09382.10 ABA80539.1 - 2.6e-34 117.4 0.0 1.9e-33 114.6 0.0 2.2 2 0 0 2 2 2 1 RQC domain Helicase_C PF00271.31 ABA80539.1 - 6.1e-19 68.4 0.0 8.6e-17 61.5 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 ABA80539.1 - 2.6e-18 66.4 0.0 6.8e-18 65.0 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 ABA80539.1 - 3.7e-12 46.8 0.0 7.7e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 RecQ zinc-binding Rhodanese PF00581.20 ABA80539.1 - 0.0041 17.6 0.0 0.009 16.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain DUF763 PF05559.11 ABA80539.1 - 0.13 11.4 0.0 0.34 10.1 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF763) YGGT PF02325.17 ABA80540.2 - 6.7e-14 52.1 8.5 8.4e-14 51.7 8.5 1.2 1 0 0 1 1 1 1 YGGT family 4HBT_2 PF13279.6 ABA80541.2 - 6.6e-09 36.3 0.0 1e-08 35.7 0.0 1.3 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 ABA80541.2 - 1.2e-05 25.6 0.0 1.9e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily ATG22 PF11700.8 ABA80542.1 - 5.8e-31 107.7 17.1 2.4e-28 99.0 2.7 2.9 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like MFS_1 PF07690.16 ABA80542.1 - 6.3e-13 48.4 67.3 8.3e-09 34.8 21.1 3.0 2 1 1 3 3 3 3 Major Facilitator Superfamily Peptidase_M74 PF03411.13 ABA80543.1 - 2.4e-95 318.7 0.0 2.7e-95 318.5 0.0 1.0 1 0 0 1 1 1 1 Penicillin-insensitive murein endopeptidase Metal_resist PF13801.6 ABA80543.1 - 0.038 14.2 0.6 0.098 12.9 0.3 1.8 1 1 0 1 1 1 0 Heavy-metal resistance Phytase-like PF13449.6 ABA80544.2 - 2.3e-32 113.1 0.1 3.9e-32 112.3 0.1 1.3 1 1 0 1 1 1 1 Esterase-like activity of phytase Vut_1 PF02592.15 ABA80545.1 - 3.1e-33 115.2 3.9 3.1e-33 115.2 3.9 1.6 2 0 0 2 2 2 1 Putative vitamin uptake transporter RF-1 PF00472.20 ABA80546.1 - 9.6e-24 83.5 0.8 1.1e-23 83.3 0.8 1.1 1 0 0 1 1 1 1 RF-1 domain MRP-S28 PF10213.9 ABA80546.1 - 0.00025 21.5 0.0 0.00029 21.3 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial ribosomal subunit protein DUF3646 PF12362.8 ABA80546.1 - 0.044 14.1 2.9 0.061 13.7 2.0 1.7 1 1 1 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal Pilus_CpaD PF09476.10 ABA80546.1 - 0.086 12.6 1.2 0.11 12.3 1.2 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) NAPRTase PF04095.16 ABA80547.1 - 4.3e-59 200.0 0.0 5.6e-59 199.7 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 ABA80547.1 - 2.5e-25 89.3 0.0 3.9e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CobW_C PF07683.14 ABA80547.1 - 0.1 12.6 1.8 0.33 10.9 0.1 2.6 3 0 0 3 3 3 0 Cobalamin synthesis protein cobW C-terminal domain Isochorismatase PF00857.20 ABA80548.1 - 1.7e-32 113.0 0.0 2.3e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family adh_short_C2 PF13561.6 ABA80549.1 - 4.8e-57 193.2 0.1 6e-57 192.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80549.1 - 5.2e-44 150.0 0.0 6.8e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA80549.1 - 1.5e-13 51.0 0.2 3.2e-13 50.0 0.2 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA80549.1 - 0.0063 16.0 0.0 0.0079 15.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA80549.1 - 0.045 12.8 0.0 0.055 12.6 0.0 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain DUF1776 PF08643.10 ABA80549.1 - 0.088 12.2 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) DGOK PF05035.12 ABA80550.1 - 3.5e-97 324.7 0.4 4e-97 324.5 0.4 1.0 1 0 0 1 1 1 1 2-keto-3-deoxy-galactonokinase Alpha-amylase PF00128.24 ABA80551.1 - 3.4e-85 286.6 0.0 4.7e-85 286.1 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 ABA80551.1 - 7.6e-05 23.0 0.0 0.00019 21.7 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 ABA80551.1 - 0.087 13.0 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain MFS_1 PF07690.16 ABA80552.1 - 2.3e-40 138.6 79.1 3.2e-37 128.3 47.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA80552.1 - 0.0081 15.1 2.6 0.0081 15.1 2.6 3.1 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 ABA80552.1 - 0.023 13.6 27.1 0.27 10.1 1.8 2.8 1 1 1 2 2 2 0 MFS_1 like family Gate PF07670.14 ABA80552.1 - 0.11 12.7 13.3 0.71 10.2 1.8 3.5 2 2 1 3 3 3 0 Nucleoside recognition MFS_1 PF07690.16 ABA80553.1 - 1.3e-24 86.8 70.0 2.2e-17 63.1 32.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Glycos_transf_1 PF00534.20 ABA80554.1 - 2.2e-33 115.2 0.0 2.9e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA80554.1 - 1.8e-29 102.9 0.3 3.7e-29 101.9 0.3 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 ABA80554.1 - 7.6e-12 45.5 0.0 1.6e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA80554.1 - 0.0029 17.6 1.3 0.0029 17.6 1.3 2.7 2 2 0 2 2 2 1 Glycosyltransferase Family 4 Glycogen_syn PF05693.13 ABA80554.1 - 0.12 10.8 0.0 0.28 9.7 0.0 1.5 2 0 0 2 2 2 0 Glycogen synthase Glyco_transf_29 PF00777.18 ABA80555.1 - 9.5e-11 41.6 0.0 8.6e-08 31.9 0.0 2.3 1 1 1 2 2 2 2 Glycosyltransferase family 29 (sialyltransferase) Semialdhyde_dhC PF02774.18 ABA80556.1 - 1.9e-55 187.8 0.0 2.8e-55 187.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 ABA80556.1 - 1.6e-30 106.0 0.0 3e-30 105.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 ABA80556.1 - 0.051 13.2 0.2 0.25 10.9 0.1 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAD_binding_10 PF13460.6 ABA80556.1 - 0.099 12.5 0.2 0.42 10.5 0.2 2.0 1 1 0 1 1 1 0 NAD(P)H-binding Pro_CA PF00484.19 ABA80557.2 - 1.6e-44 151.9 0.0 1.9e-44 151.7 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Flp_Fap PF04964.14 ABA80557.2 - 0.065 13.1 0.1 0.18 11.7 0.1 1.7 2 0 0 2 2 2 0 Flp/Fap pilin component UPF0154 PF03672.13 ABA80558.1 - 0.071 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) Peptidase_M17 PF00883.21 ABA80559.2 - 8.2e-101 337.4 0.0 1e-100 337.0 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 ABA80559.2 - 0.058 13.3 0.3 0.19 11.6 0.3 1.9 1 1 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain NLPC_P60 PF00877.19 ABA80560.2 - 1.6e-16 60.2 0.0 2.4e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 NlpC/P60 family SH3_16 PF18348.1 ABA80560.2 - 1e-15 57.2 0.5 2e-14 53.1 0.2 2.7 2 0 0 2 2 2 1 Bacterial dipeptidyl-peptidase Sh3 domain SH3_3 PF08239.11 ABA80560.2 - 0.14 12.4 0.0 1.9 8.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial SH3 domain HTH_42 PF06224.12 ABA80561.1 - 7.4e-81 272.2 25.4 8.8e-81 272.0 25.4 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Radical_SAM PF04055.21 ABA80562.1 - 1.1e-16 61.7 0.1 6.5e-16 59.1 0.1 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 ABA80562.1 - 0.004 17.3 0.3 0.018 15.2 0.3 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain IalB PF06776.12 ABA80563.1 - 2.6e-05 24.2 0.4 6.9e-05 22.9 0.1 1.8 2 0 0 2 2 2 1 Invasion associated locus B (IalB) protein Pr_beta_C PF12465.8 ABA80563.1 - 0.078 12.4 1.4 1 8.8 0.1 2.4 2 0 0 2 2 2 0 Proteasome beta subunits C terminal ACC_epsilon PF13822.6 ABA80563.1 - 1.4 9.6 5.0 16 6.2 1.3 2.5 2 0 0 2 2 2 0 Acyl-CoA carboxylase epsilon subunit Asparaginase_II PF06089.12 ABA80564.1 - 1.1e-105 353.2 4.0 1.3e-105 353.1 4.0 1.0 1 0 0 1 1 1 1 L-asparaginase II Phage_Mu_Gp45 PF06890.12 ABA80564.1 - 0.052 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein Epimerase PF01370.21 ABA80565.1 - 3.6e-07 29.9 0.1 0.0011 18.4 0.0 3.1 3 1 0 3 3 3 2 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA80565.1 - 7.4e-05 22.0 0.0 0.00086 18.5 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 ABA80565.1 - 0.041 13.3 0.0 1.4 8.3 0.0 2.9 3 1 0 3 3 3 0 GDP-mannose 4,6 dehydratase AMNp_N PF10423.9 ABA80566.1 - 7.2e-55 184.9 0.0 3.3e-54 182.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial AMP nucleoside phosphorylase N-terminus PNP_UDP_1 PF01048.20 ABA80566.1 - 4.3e-15 55.6 0.0 7.1e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Phosphorylase superfamily Bac_DNA_binding PF00216.21 ABA80567.1 - 1.4e-25 89.3 0.2 1.5e-25 89.2 0.2 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 ABA80567.1 - 0.0015 18.6 0.0 0.0017 18.4 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif EamA PF00892.20 ABA80568.1 - 4.9e-36 123.9 45.3 3.6e-21 75.8 17.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 ABA80568.1 - 1.2e-08 34.6 8.3 5e-07 29.4 2.8 2.3 1 1 0 2 2 2 2 Triose-phosphate Transporter family Chorismate_synt PF01264.21 ABA80569.1 - 5.2e-135 449.4 0.0 5.9e-135 449.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase SBP_bac_11 PF13531.6 ABA80570.1 - 1.8e-14 54.0 0.3 3.8e-14 53.0 0.3 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA80570.1 - 1.7e-11 44.0 0.1 2.3e-11 43.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA80570.1 - 6.6e-09 36.2 0.1 9.6e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA80570.1 - 3.3e-07 30.4 0.0 4.9e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA80571.1 - 1e-06 28.6 46.3 0.00045 20.0 19.8 3.5 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA80572.1 - 1.2e-30 106.8 0.0 1.6e-30 106.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80572.1 - 9.7e-11 42.0 0.1 7.7e-06 25.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 ABA80572.1 - 1.7e-05 24.5 0.1 0.02 14.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 ABA80572.1 - 0.00032 20.4 0.1 0.0006 19.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA80572.1 - 0.0011 18.5 0.0 0.8 9.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA80572.1 - 0.0012 19.3 0.6 0.0021 18.5 0.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA80572.1 - 0.011 16.0 0.0 0.65 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 ABA80572.1 - 0.022 14.5 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 ABA80572.1 - 0.026 14.4 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 ABA80572.1 - 0.04 13.6 0.0 4.4 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 ABA80572.1 - 0.053 13.8 0.1 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 ABA80572.1 - 0.14 11.8 2.6 1.2 8.8 2.6 2.1 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 ABA80572.1 - 0.15 12.1 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 ABA80572.1 - 0.16 12.1 0.3 4.2 7.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA80572.1 - 0.19 11.7 0.1 0.43 10.5 0.1 1.6 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 ABA80572.1 - 0.2 10.7 0.0 0.38 9.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 ABA80572.1 - 0.2 12.1 0.1 0.31 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain Cytochrom_C1 PF02167.15 ABA80573.1 - 1.8e-74 250.2 0.0 2.4e-74 249.8 0.0 1.1 1 0 0 1 1 1 1 Cytochrome C1 family Cytochrome_CBB3 PF13442.6 ABA80573.1 - 0.0014 18.9 0.0 0.007 16.7 0.0 2.2 2 0 0 2 2 2 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA80573.1 - 0.012 16.7 1.2 0.021 15.9 0.2 2.1 2 2 0 2 2 2 0 Cytochrome c Cytochrom_C550 PF14495.6 ABA80573.1 - 0.11 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c-550 domain Cytochrome_B PF00033.19 ABA80574.1 - 3.4e-71 239.0 19.7 3.4e-71 239.0 19.7 2.2 3 0 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 ABA80574.1 - 5.3e-45 153.5 15.1 1.3e-43 149.0 9.9 2.5 2 0 0 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.17 ABA80574.1 - 2.8e-37 127.1 7.6 2.8e-37 127.1 7.6 3.3 4 0 0 4 4 4 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 ABA80574.1 - 0.0017 18.9 7.8 0.0017 18.9 7.8 4.6 5 1 0 5 5 5 1 Domain of unknown function (DUF4405) DUF973 PF06157.11 ABA80574.1 - 6.3 5.8 6.6 0.31 10.0 0.4 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF973) UCR_Fe-S_N PF10399.9 ABA80575.1 - 1.3e-21 75.7 0.6 2e-21 75.1 0.6 1.3 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Rieske PF00355.26 ABA80575.1 - 5.8e-13 48.6 0.0 2.8e-12 46.4 0.0 1.9 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 ABA80575.1 - 0.016 15.0 0.5 0.032 14.1 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.10 ABA80575.1 - 0.017 15.1 0.3 0.03 14.3 0.3 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit UCR_TM PF02921.14 ABA80575.1 - 0.12 12.8 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Ubiquinol cytochrome reductase transmembrane region GST_N_3 PF13417.6 ABA80576.1 - 3e-15 56.4 0.0 6.2e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 ABA80576.1 - 8.1e-14 51.7 0.0 2.8e-13 49.9 0.0 1.9 2 1 1 3 3 3 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 ABA80576.1 - 8.2e-06 26.1 0.0 2.5e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 ABA80576.1 - 0.00073 19.5 0.9 0.0018 18.2 0.9 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Ribosomal_L36 PF00444.18 ABA80578.1 - 3.2e-16 59.2 6.2 3.8e-16 59.0 6.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L36 DUF2452 PF10504.9 ABA80578.1 - 0.093 12.2 0.1 0.1 12.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) FGase PF05013.12 ABA80579.1 - 5e-70 236.1 0.4 5.9e-70 235.8 0.4 1.0 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase MRP-L28 PF09812.9 ABA80579.1 - 0.13 12.4 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 IMS PF00817.20 ABA80580.2 - 6.2e-46 156.1 0.0 1.1e-45 155.3 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 ABA80580.2 - 3.9e-19 69.5 0.2 4.7e-18 66.0 0.0 2.1 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain DNA_pol_lambd_f PF10391.9 ABA80580.2 - 0.00038 20.2 0.1 0.00087 19.1 0.1 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 ABA80580.2 - 0.0012 19.1 0.0 0.0029 17.8 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif RNA_pol_A_CTD PF03118.15 ABA80580.2 - 0.13 12.0 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain zf-RING_4 PF14570.6 ABA80580.2 - 0.19 11.5 1.6 0.4 10.5 1.6 1.4 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Band_7 PF01145.25 ABA80581.1 - 2.7e-29 102.4 15.3 3.1e-29 102.2 13.8 1.8 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_C PF16200.5 ABA80581.1 - 0.0002 21.3 1.4 0.00057 19.9 1.4 1.8 1 0 0 1 1 1 1 C-terminal region of band_7 Band_7_1 PF13421.6 ABA80581.1 - 0.0031 17.3 1.0 0.0064 16.2 0.2 1.8 2 1 0 2 2 2 1 SPFH domain-Band 7 family UPF0542 PF15086.6 ABA80581.1 - 0.06 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 PHO4 PF01384.20 ABA80582.1 - 1.8 7.6 5.9 2.1 7.3 5.9 1.1 1 0 0 1 1 1 0 Phosphate transporter family TctB PF07331.11 ABA80582.1 - 9.1 6.6 18.3 11 6.3 18.3 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family OAD_gamma PF04277.13 ABA80583.1 - 0.011 16.3 9.6 0.69 10.5 9.6 2.3 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain PepSY_TM PF03929.16 ABA80583.1 - 0.12 12.1 1.3 0.13 11.9 1.3 1.1 1 0 0 1 1 1 0 PepSY-associated TM region FAP PF07174.11 ABA80583.1 - 3.7 6.9 26.3 5.4 6.4 26.3 1.3 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) OMPdecase PF00215.24 ABA80584.2 - 7e-39 133.7 0.3 7.8e-39 133.6 0.3 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_mutase PF13714.6 ABA80584.2 - 0.017 14.6 1.2 0.022 14.2 1.2 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase ROK PF00480.20 ABA80585.1 - 7.3e-46 157.0 0.0 8.7e-46 156.7 0.0 1.1 1 0 0 1 1 1 1 ROK family AAA_2 PF07724.14 ABA80587.1 - 1.6e-55 187.8 0.0 7.2e-53 179.2 0.0 3.1 3 0 0 3 3 3 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 ABA80587.1 - 4.8e-36 122.8 4.3 4.8e-36 122.8 4.3 2.6 2 0 0 2 2 2 1 AAA lid domain ClpB_D2-small PF10431.9 ABA80587.1 - 5.5e-28 96.8 0.1 1.9e-27 95.1 0.1 2.0 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 ABA80587.1 - 1.4e-24 87.0 0.0 2e-12 47.7 0.0 3.2 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA80587.1 - 1.7e-18 67.0 0.1 3.5e-12 46.5 0.0 4.2 4 1 0 4 4 2 2 AAA domain (dynein-related subfamily) Clp_N PF02861.20 ABA80587.1 - 1.7e-17 63.3 4.7 5.3e-10 39.3 0.5 3.2 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA_16 PF13191.6 ABA80587.1 - 5.2e-11 43.2 10.6 0.00022 21.7 0.0 5.4 4 2 0 4 4 4 2 AAA ATPase domain Sigma54_activat PF00158.26 ABA80587.1 - 5.8e-08 32.6 0.0 0.00015 21.5 0.0 2.8 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 ABA80587.1 - 1.1e-07 32.2 3.3 0.013 15.8 0.0 4.9 4 2 0 4 4 2 2 AAA domain IstB_IS21 PF01695.17 ABA80587.1 - 5.6e-07 29.5 0.0 0.044 13.5 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein TniB PF05621.11 ABA80587.1 - 8e-06 25.4 0.0 0.0027 17.1 0.0 3.3 2 1 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 ABA80587.1 - 2.9e-05 24.1 0.1 3.4 7.5 0.0 3.9 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 ABA80587.1 - 5.4e-05 22.8 0.0 0.055 13.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region RuvB_N PF05496.12 ABA80587.1 - 6.6e-05 22.7 0.0 1.7 8.4 0.0 4.0 4 0 0 4 4 4 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 ABA80587.1 - 0.00019 20.9 0.1 0.4 10.0 0.0 3.4 2 2 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 ABA80587.1 - 0.00021 21.8 0.0 1.4 9.5 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 ABA80587.1 - 0.00078 19.7 2.3 17 5.6 0.0 4.4 3 1 1 4 4 3 0 AAA domain AAA_14 PF13173.6 ABA80587.1 - 0.00087 19.3 0.0 0.58 10.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 ABA80587.1 - 0.0014 18.8 0.0 1.1 9.6 0.0 2.6 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_23 PF13476.6 ABA80587.1 - 0.0018 18.8 12.0 3.3 8.2 0.0 3.6 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 ABA80587.1 - 0.0019 17.8 3.1 0.012 15.2 0.0 3.0 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 ABA80587.1 - 0.0029 16.9 0.1 0.7 9.1 0.0 3.2 2 1 1 3 3 3 1 Zeta toxin NACHT PF05729.12 ABA80587.1 - 0.0035 17.3 0.0 0.46 10.4 0.0 2.7 2 0 0 2 2 2 1 NACHT domain TsaE PF02367.17 ABA80587.1 - 0.0039 17.2 0.0 1.6 8.8 0.0 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 ABA80587.1 - 0.0041 17.5 0.0 4 7.9 0.0 2.6 2 0 0 2 2 2 0 RNA helicase AAA_3 PF07726.11 ABA80587.1 - 0.0049 16.7 0.0 0.49 10.2 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 ABA80587.1 - 0.0073 16.3 0.0 1.3 9.0 0.0 3.3 2 1 0 3 3 3 1 Type III restriction enzyme, res subunit ABC_tran PF00005.27 ABA80587.1 - 0.0079 16.7 0.0 8 7.0 0.0 3.8 3 1 0 3 3 3 0 ABC transporter Bac_DnaA PF00308.18 ABA80587.1 - 0.012 15.5 0.8 1.5 8.6 0.0 3.5 4 0 0 4 4 3 0 Bacterial dnaA protein AAA_24 PF13479.6 ABA80587.1 - 0.012 15.4 0.0 4.1 7.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 ABA80587.1 - 0.014 15.5 0.0 8.3 6.6 0.0 3.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA80587.1 - 0.015 15.2 0.0 8.1 6.3 0.0 2.7 3 0 0 3 3 2 0 RsgA GTPase DNA_pol3_delta2 PF13177.6 ABA80587.1 - 0.02 14.7 0.0 4.5 7.0 0.0 3.0 3 0 0 3 3 2 0 DNA polymerase III, delta subunit AAA_19 PF13245.6 ABA80587.1 - 0.042 14.2 0.2 12 6.2 0.2 3.4 3 1 0 3 3 2 0 AAA domain Fez1 PF06818.15 ABA80587.1 - 0.053 14.0 10.2 0.19 12.2 10.2 1.9 1 0 0 1 1 1 0 Fez1 Torsin PF06309.11 ABA80587.1 - 0.055 13.6 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Torsin PV-1 PF06637.11 ABA80587.1 - 0.055 12.3 10.0 0.096 11.5 10.0 1.3 1 0 0 1 1 1 0 PV-1 protein (PLVAP) AAA_29 PF13555.6 ABA80587.1 - 0.09 12.5 0.0 12 5.7 0.0 2.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 ABA80587.1 - 0.15 12.0 0.0 12 5.8 0.0 2.7 2 0 0 2 2 2 0 NTPase ADIP PF11559.8 ABA80587.1 - 0.56 10.3 9.2 1.7 8.7 9.2 1.8 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding UPF0242 PF06785.11 ABA80587.1 - 0.86 9.7 5.3 2 8.5 5.3 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 ABA80587.1 - 2.6 6.8 13.8 0.36 9.7 9.7 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FlxA PF14282.6 ABA80587.1 - 2.9 7.9 8.0 0.5 10.4 2.2 2.2 1 1 1 2 2 2 0 FlxA-like protein DUF4407 PF14362.6 ABA80587.1 - 4.1 6.7 14.9 0.26 10.6 7.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) DUF3053 PF11254.8 ABA80587.1 - 4.1 6.9 6.0 12 5.4 4.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3053) Fasciclin PF02469.22 ABA80588.1 - 4.8e-37 127.0 0.0 5.7e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Oxidored_molyb PF00174.19 ABA80589.1 - 5.9e-31 107.4 0.0 8.4e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.9 ABA80589.1 - 0.038 13.8 0.6 0.077 12.9 0.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ferric_reduct PF01794.19 ABA80590.1 - 1.8e-17 63.6 7.0 1.8e-17 63.6 7.0 2.2 2 0 0 2 2 2 1 Ferric reductase like transmembrane component DUF3883 PF13020.6 ABA80593.1 - 2.6e-21 75.4 0.0 4e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ParE_toxin PF05016.15 ABA80594.1 - 8.9e-08 32.6 0.2 1e-07 32.4 0.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE HTH_3 PF01381.22 ABA80596.1 - 0.12 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Resolvase PF00239.21 ABA80597.1 - 2.1e-21 76.6 0.6 4.4e-21 75.5 0.2 1.7 2 0 0 2 2 2 1 Resolvase, N terminal domain Recombinase PF07508.13 ABA80597.1 - 3.9e-20 72.2 0.1 6.5e-20 71.5 0.1 1.4 1 0 0 1 1 1 1 Recombinase RepB PF07506.11 ABA80598.1 - 8.5e-31 107.5 2.2 1.3e-30 106.9 2.2 1.2 1 0 0 1 1 1 1 RepB plasmid partitioning protein ParBc PF02195.18 ABA80598.1 - 5.7e-11 42.6 0.1 1e-10 41.7 0.1 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain DUF3239 PF11580.8 ABA80598.1 - 0.12 12.6 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3239) RepB PF07506.11 ABA80599.1 - 4.7e-54 183.3 0.2 6.3e-54 182.9 0.2 1.2 1 0 0 1 1 1 1 RepB plasmid partitioning protein ParBc PF02195.18 ABA80599.1 - 9.9e-07 29.0 0.1 2.9e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain Strep_SA_rep PF06696.11 ABA80599.1 - 0.0054 16.7 0.1 0.01 15.8 0.1 1.5 1 0 0 1 1 1 1 Streptococcal surface antigen repeat DUF2059 PF09832.9 ABA80601.1 - 1.5e-18 66.6 5.4 7.2e-12 45.2 3.2 2.8 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2059) L_lactis_ph-MCP PF06673.11 ABA80601.1 - 0.094 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major capsid protein Ribosomal_L21p PF00829.21 ABA80602.1 - 8.4e-35 119.1 1.7 1e-34 118.8 1.7 1.1 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein Ribosomal_L27 PF01016.19 ABA80603.1 - 1.9e-36 123.9 1.5 2.2e-36 123.7 1.5 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein ECR1_N PF14382.6 ABA80603.1 - 0.053 13.3 0.3 0.081 12.7 0.3 1.3 1 0 0 1 1 1 0 Exosome complex exonuclease RRP4 N-terminal region Acetyltransf_3 PF13302.7 ABA80604.2 - 1.7e-24 87.0 0.0 2.1e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 ABA80604.2 - 2.1e-08 34.4 0.0 2.7e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 ABA80604.2 - 0.00072 19.5 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 ABA80604.2 - 0.0028 17.8 0.0 0.0037 17.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF1858 PF08984.11 ABA80604.2 - 0.05 13.8 0.0 0.092 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1858) Acetyltransf_8 PF13523.6 ABA80604.2 - 0.13 12.0 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GTP1_OBG PF01018.22 ABA80605.1 - 1.6e-56 190.2 1.3 1.6e-56 190.2 1.3 1.6 2 0 0 2 2 2 1 GTP1/OBG MMR_HSR1 PF01926.23 ABA80605.1 - 3.2e-24 85.2 0.0 4.9e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 ABA80605.1 - 8.7e-12 44.8 0.0 1.9e-11 43.7 0.0 1.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 ABA80605.1 - 0.0068 15.9 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 ABA80605.1 - 0.06 13.4 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 ABA80605.1 - 0.081 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AA_kinase PF00696.28 ABA80606.1 - 1.6e-42 145.8 0.7 2.2e-42 145.3 0.7 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 ABA80606.1 - 1.7e-20 72.7 0.6 4.2e-20 71.5 0.6 1.7 1 0 0 1 1 1 1 PUA domain Aldedh PF00171.22 ABA80607.1 - 2.3e-13 49.5 2.7 1.9e-10 39.9 1.3 2.3 2 1 0 2 2 2 2 Aldehyde dehydrogenase family HPTransfase PF10090.9 ABA80608.1 - 2.8e-28 98.2 0.0 3.6e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 Histidine phosphotransferase C-terminal domain DUF3553 PF12073.8 ABA80609.1 - 3.3e-27 94.0 0.7 3.7e-27 93.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3553) Acetyltransf_5 PF13444.6 ABA80610.1 - 4.2e-32 110.8 0.2 6.6e-32 110.2 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acyltransferase PF01553.21 ABA80611.2 - 2.3e-18 66.1 0.0 3.1e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase TMP-TENI PF02581.17 ABA80612.1 - 6.4e-24 84.3 0.0 7.4e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase SpoU_methylase PF00588.19 ABA80613.1 - 1.8e-27 96.3 0.0 2.2e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family EthD PF07110.11 ABA80614.1 - 1.5e-12 48.5 0.0 1.9e-12 48.2 0.0 1.1 1 0 0 1 1 1 1 EthD domain ABM PF03992.16 ABA80614.1 - 0.00012 22.1 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase MmlI PF09448.10 ABA80614.1 - 0.00021 21.7 0.0 0.00073 20.0 0.0 1.8 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase Dabb PF07876.12 ABA80614.1 - 0.00068 20.2 0.0 0.00085 19.9 0.0 1.2 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain DUF1330 PF07045.11 ABA80614.1 - 0.0015 18.8 0.0 0.0016 18.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) COX15-CtaA PF02628.15 ABA80615.1 - 2.5e-99 332.5 21.1 2.8e-99 332.3 21.1 1.0 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein SLATT_fungal PF18142.1 ABA80615.1 - 0.074 13.1 2.1 1.2 9.2 0.1 2.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain Ost5 PF05251.12 ABA80615.1 - 0.078 13.3 0.1 0.078 13.3 0.1 3.2 5 0 0 5 5 5 0 Oligosaccharyltransferase subunit 5 Peptidase_M32 PF02074.15 ABA80616.1 - 1.5e-158 528.6 0.0 1.7e-158 528.4 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase ECH_1 PF00378.20 ABA80617.1 - 3.1e-50 170.8 0.8 3.6e-50 170.6 0.8 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 ABA80617.1 - 2.7e-34 119.1 1.3 6.7e-34 117.9 1.3 1.6 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 ABA80617.1 - 0.13 12.3 0.7 16 5.4 0.0 2.2 1 1 1 2 2 2 0 Peptidase family S49 DUF5304 PF17230.2 ABA80617.1 - 0.27 11.5 2.1 5.1 7.3 0.2 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5304) 4HBT PF03061.22 ABA80618.1 - 6.2e-11 42.5 0.1 9.5e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily UreE_N PF02814.15 ABA80618.1 - 0.016 14.8 0.3 0.69 9.6 0.1 2.4 2 0 0 2 2 2 0 UreE urease accessory protein, N-terminal domain DUF4442 PF14539.6 ABA80618.1 - 0.031 14.4 0.0 0.034 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) Bactofilin PF04519.13 ABA80619.1 - 2.4e-20 72.6 1.6 2.8e-20 72.4 1.6 1.0 1 0 0 1 1 1 1 Polymer-forming cytoskeletal MinC_C PF03775.16 ABA80619.1 - 0.1 12.6 0.3 0.79 9.7 0.1 2.1 1 1 1 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain Amidohydro_3 PF07969.11 ABA80621.1 - 8.2e-94 315.7 16.3 1.1e-93 315.2 16.3 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 ABA80621.1 - 1.6e-09 37.6 1.0 8.6e-07 28.6 0.0 3.1 3 1 0 3 3 3 2 Amidohydrolase family CHAT PF12770.7 ABA80621.1 - 0.047 13.1 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 CHAT domain VWA PF00092.28 ABA80626.1 - 9.1e-17 61.9 0.0 1.3e-16 61.3 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 ABA80626.1 - 2.1e-08 34.8 0.0 3.4e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 ABA80626.1 - 6.8e-06 26.1 0.0 2.6e-05 24.2 0.0 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain Copine PF07002.16 ABA80626.1 - 0.005 16.3 0.0 0.0068 15.9 0.0 1.1 1 0 0 1 1 1 1 Copine VWA_CoxE PF05762.14 ABA80626.1 - 0.011 15.2 0.4 0.032 13.6 0.4 1.7 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein CobT_C PF11775.8 ABA80626.1 - 0.014 15.1 0.1 4 7.0 0.0 2.4 2 1 0 2 2 2 0 Cobalamin biosynthesis protein CobT VWA domain DUF4903 PF16246.5 ABA80626.1 - 0.21 11.2 0.0 0.32 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4903) HTH_32 PF13565.6 ABA80627.1 - 9.2e-11 42.2 0.1 4.5e-10 40.0 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 ABA80627.1 - 9.7e-11 41.6 0.0 2.4e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 ABA80627.1 - 2.2e-08 34.0 0.0 5.8e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 ABA80627.1 - 2e-06 27.4 0.2 9.7e-06 25.2 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain LZ_Tnp_IS481 PF13011.6 ABA80627.1 - 6.2e-06 26.6 0.0 1.5e-05 25.5 0.0 1.6 2 0 0 2 2 2 1 leucine-zipper of insertion element IS481 HTH_21 PF13276.6 ABA80627.1 - 7.5e-05 22.8 0.0 0.00015 21.8 0.0 1.5 1 0 0 1 1 1 1 HTH-like domain HTH_Tnp_1 PF01527.20 ABA80627.1 - 0.0003 21.1 0.1 0.00081 19.7 0.0 1.8 2 0 0 2 2 2 1 Transposase HTH_Tnp_Tc3_2 PF01498.18 ABA80627.1 - 0.00072 19.7 0.0 0.0016 18.6 0.0 1.6 1 0 0 1 1 1 1 Transposase DUF1153 PF06627.11 ABA80627.1 - 0.052 13.7 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1153) HTH_Tnp_1 PF01527.20 ABA80628.1 - 1.9e-19 69.7 0.1 3e-19 69.1 0.1 1.3 1 0 0 1 1 1 1 Transposase DUF222 PF02720.17 ABA80628.1 - 0.00027 20.5 0.7 0.00035 20.1 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF222) HTH_23 PF13384.6 ABA80628.1 - 0.024 14.4 0.2 0.024 14.4 0.2 1.6 2 0 0 2 2 2 0 Homeodomain-like domain CENP-B_N PF04218.13 ABA80628.1 - 0.2 11.3 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HpcH_HpaI PF03328.14 ABA80629.1 - 8.7e-25 87.1 0.9 1.4e-24 86.5 0.9 1.3 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family BKACE PF05853.12 ABA80630.1 - 2.2e-103 345.3 0.1 2.5e-103 345.2 0.1 1.0 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme Phenol_MetA_deg PF13557.6 ABA80631.1 - 5.9e-25 88.6 5.4 7e-25 88.4 5.4 1.1 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation Flavin_Reduct PF01613.18 ABA80632.1 - 2.2e-34 118.8 0.0 2.5e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain gpW PF02831.15 ABA80632.1 - 0.13 12.1 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 gpW Acyl-CoA_dh_2 PF08028.11 ABA80633.1 - 1.3e-35 122.6 5.1 2.4e-35 121.7 5.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 ABA80633.1 - 0.00034 21.2 0.2 0.0029 18.3 0.0 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 ABA80633.1 - 0.0058 16.9 2.4 0.0058 16.9 2.4 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Abhydrolase_6 PF12697.7 ABA80634.1 - 2.9e-06 28.0 13.5 4.1e-06 27.6 13.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA80634.1 - 1.4e-05 24.9 0.7 0.0015 18.3 0.9 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold SnoaL_4 PF13577.6 ABA80635.1 - 1.2e-07 31.9 0.0 1.6e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain Glyoxalase PF00903.25 ABA80636.1 - 1.8e-18 66.9 0.2 2.7e-10 40.5 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 ABA80636.1 - 0.0018 18.5 0.8 1.7 8.9 0.1 3.1 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 ABA80636.1 - 0.0082 16.3 1.4 0.7 10.0 0.1 3.1 2 2 2 4 4 4 1 Glyoxalase-like domain TetR_N PF00440.23 ABA80637.2 - 7.3e-07 28.9 0.0 1.7e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Flavodoxin_2 PF02525.17 ABA80639.1 - 4.4e-36 124.5 0.0 5.5e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold HTH_IclR PF09339.10 ABA80640.1 - 3.3e-13 49.2 0.4 8.4e-13 47.9 0.4 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 ABA80640.1 - 7.4e-06 25.8 0.4 2.2e-05 24.3 0.4 1.8 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 ABA80640.1 - 0.00028 21.2 0.1 0.00053 20.3 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 ABA80640.1 - 0.00069 19.1 0.2 0.0021 17.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 ABA80640.1 - 0.00083 19.2 0.1 0.0024 17.7 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 ABA80640.1 - 0.0043 17.2 0.1 0.0085 16.3 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF742 PF05331.11 ABA80640.1 - 0.0044 16.8 0.5 0.093 12.5 0.2 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF742) HTH_5 PF01022.20 ABA80640.1 - 0.012 15.4 0.0 0.028 14.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 ABA80640.1 - 0.015 15.2 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 ABA80640.1 - 0.036 13.8 0.0 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 ABA80640.1 - 0.039 13.9 0.0 0.081 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA80640.1 - 0.065 13.2 0.1 0.16 12.0 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DprA_WH PF17782.1 ABA80640.1 - 0.24 11.5 3.5 0.44 10.7 0.2 2.7 3 0 0 3 3 3 0 DprA winged helix domain Aminotran_1_2 PF00155.21 ABA80641.1 - 1.3e-20 73.9 0.0 1.7e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 ABA80641.1 - 8.6e-20 70.2 2.1 1.5e-19 69.3 0.4 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 ABA80641.1 - 1.5e-05 24.8 0.3 5.2e-05 23.0 0.3 1.9 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 ABA80641.1 - 9.1e-05 22.4 0.0 0.0002 21.2 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DegT_DnrJ_EryC1 PF01041.17 ABA80641.1 - 0.0012 18.2 0.1 0.0027 17.1 0.1 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_24 PF13412.6 ABA80641.1 - 0.0013 18.2 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 ABA80641.1 - 0.026 14.3 0.2 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_36 PF13730.6 ABA80641.1 - 0.03 14.3 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Cys_Met_Meta_PP PF01053.20 ABA80641.1 - 0.039 12.5 0.0 0.06 11.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HTH_29 PF13551.6 ABA80641.1 - 0.051 13.6 0.1 0.16 12.1 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn helix MarR PF01047.22 ABA80641.1 - 0.061 13.3 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.6 ABA80641.1 - 0.085 13.0 0.4 0.99 9.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 ABA80641.1 - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 ABA80641.1 - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fer4_18 PF13746.6 ABA80642.1 - 1.8e-36 124.8 11.0 6e-35 119.9 11.0 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain FixG_C PF11614.8 ABA80642.1 - 1.3e-20 73.8 0.0 1.9e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Fer4_5 PF12801.7 ABA80642.1 - 9.2e-09 35.1 3.2 9.2e-09 35.1 3.2 4.2 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_7 PF12838.7 ABA80642.1 - 4.9e-08 33.4 7.2 0.0001 22.8 2.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80642.1 - 1.5e-07 31.7 4.3 0.0018 18.7 1.3 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA80642.1 - 1.9e-07 31.5 5.4 0.00048 20.6 1.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA80642.1 - 3.6e-07 30.2 15.3 1.6e-05 24.9 2.4 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 ABA80642.1 - 8.8e-06 25.8 10.5 0.013 15.6 1.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA80642.1 - 0.00051 20.1 17.7 0.0035 17.4 13.6 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA80642.1 - 0.002 18.5 2.3 0.002 18.5 2.3 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 ABA80642.1 - 0.003 17.6 5.7 0.003 17.6 5.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4 PF00037.27 ABA80642.1 - 0.0032 17.2 5.5 0.0032 17.2 5.5 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 ABA80642.1 - 0.3 11.7 15.7 0.26 11.9 4.0 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 ABA80642.1 - 0.39 11.7 19.7 0.11 13.4 4.6 2.8 3 1 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 ABA80642.1 - 0.84 10.7 27.5 0.2 12.7 5.5 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_2 PF12797.7 ABA80642.1 - 2.6 8.3 27.6 0.1 12.8 3.9 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Aminotran_1_2 PF00155.21 ABA80643.1 - 2.3e-71 240.9 0.0 2.6e-71 240.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 ABA80643.1 - 2.4e-06 26.8 0.0 3.3e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 ABA80643.1 - 0.00017 20.3 0.0 0.00026 19.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 ABA80643.1 - 0.095 12.0 0.1 0.25 10.6 0.1 1.6 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 ABA80643.1 - 0.11 11.7 0.0 0.23 10.7 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase FCD PF07729.12 ABA80644.1 - 9.5e-22 77.7 7.0 1.7e-21 76.9 7.0 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 ABA80644.1 - 3.5e-14 52.2 0.1 6.3e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 ABA80644.1 - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit BPD_transp_1 PF00528.22 ABA80645.2 - 4.8e-30 104.7 16.9 4.8e-30 104.7 16.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA80646.1 - 8.2e-26 90.9 11.6 8.2e-26 90.9 11.6 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA80646.1 - 2.6e-09 36.9 13.2 7.6e-09 35.4 1.0 3.8 3 1 0 3 3 3 2 N-terminal TM domain of oligopeptide transport permease C MNHE PF01899.16 ABA80646.1 - 1.7 8.4 8.7 2.6 7.8 5.3 2.4 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit ABC_tran PF00005.27 ABA80647.1 - 6.1e-31 107.8 0.0 7.9e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 ABA80647.1 - 2.2e-16 60.1 0.2 3.8e-16 59.3 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA80647.1 - 5.9e-07 29.6 0.1 0.0061 16.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80647.1 - 1.1e-05 25.0 0.0 1.9e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80647.1 - 0.00068 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA80647.1 - 0.002 18.6 1.4 0.0034 17.8 1.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 ABA80647.1 - 0.0023 17.4 0.1 0.017 14.5 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 ABA80647.1 - 0.015 15.6 0.1 0.038 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA80647.1 - 0.044 13.8 0.0 0.1 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 ABA80647.1 - 0.045 13.5 0.1 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 ABA80647.1 - 0.06 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 ABA80647.1 - 0.067 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 ABA80647.1 - 0.073 13.6 0.0 0.095 13.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 ABA80647.1 - 0.12 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 ABA80647.1 - 0.14 12.3 0.1 0.37 10.9 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Parvo_NS1 PF01057.17 ABA80647.1 - 0.26 10.3 0.0 0.4 9.7 0.0 1.1 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 ABA80647.1 - 7.6 6.2 7.7 67 3.1 7.7 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA80648.1 - 6.6e-24 85.0 0.0 8.7e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 ABA80648.1 - 2.8e-18 66.2 0.6 4.5e-18 65.5 0.6 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA80648.1 - 2e-08 34.4 0.2 0.00018 21.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA80648.1 - 0.0093 16.2 0.9 0.74 10.1 0.2 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 ABA80648.1 - 0.086 12.6 0.6 0.15 11.8 0.6 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SBP_bac_5 PF00496.22 ABA80649.1 - 3.6e-63 213.8 0.0 5.3e-63 213.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 ABA80649.1 - 3.8 7.5 6.8 14 5.8 6.8 2.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MFS_3 PF05977.13 ABA80650.1 - 9.1e-54 182.7 31.5 1.2e-53 182.4 31.5 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 ABA80650.1 - 9.4e-26 90.6 55.3 3.2e-23 82.2 41.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_5 PF05631.14 ABA80650.1 - 0.0029 16.6 0.7 0.0048 15.9 0.1 1.6 2 0 0 2 2 2 1 Sugar-tranasporters, 12 TM MFS_1_like PF12832.7 ABA80650.1 - 0.056 12.3 16.8 0.072 11.9 9.7 2.3 1 1 0 2 2 2 0 MFS_1 like family Peptidase_S15 PF02129.18 ABA80651.1 - 6.8e-58 196.4 1.3 9.8e-58 195.9 1.3 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.10 ABA80651.1 - 1.2e-31 110.4 0.0 1.9e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Hydrolase_4 PF12146.8 ABA80651.1 - 2e-07 30.5 0.1 3.3e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 ABA80651.1 - 1.4e-06 28.0 0.5 2.3e-06 27.3 0.5 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 ABA80651.1 - 1.9e-06 27.7 0.1 3.3e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 ABA80651.1 - 0.22 11.4 0.0 0.62 10.0 0.0 1.7 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal adh_short_C2 PF13561.6 ABA80652.1 - 6.5e-56 189.5 8.5 8.2e-56 189.2 8.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80652.1 - 1.4e-44 151.9 3.9 1.6e-44 151.7 3.9 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA80652.1 - 0.0012 18.8 5.6 0.0018 18.2 5.6 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 ABA80652.1 - 0.76 9.6 3.7 0.81 9.5 2.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BPD_transp_1 PF00528.22 ABA80653.1 - 2.6e-15 56.6 21.9 2.6e-15 56.6 21.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA80654.1 - 3.7e-14 52.9 21.9 3.7e-14 52.9 21.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 ABA80655.1 - 1.6e-29 103.6 0.0 2.2e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA80655.1 - 4.6e-18 65.5 0.0 7.7e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA80655.1 - 2.4e-12 47.4 0.4 3.8e-12 46.8 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA80655.1 - 0.022 14.5 1.5 0.21 11.3 0.2 2.8 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 ABA80655.1 - 0.03 14.2 1.1 0.03 14.2 1.1 2.6 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Lipoprotein_8 PF02030.15 ABA80655.1 - 0.26 10.0 0.0 0.36 9.5 0.0 1.1 1 0 0 1 1 1 0 Hypothetical lipoprotein (MG045 family) ABC_tran PF00005.27 ABA80656.1 - 2.1e-34 119.0 0.0 3.2e-34 118.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA80656.1 - 7.8e-13 48.4 0.5 2e-12 47.1 0.2 1.9 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 ABA80656.1 - 2.6e-05 24.2 0.0 0.02 14.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 ABA80656.1 - 0.00065 20.1 0.2 0.015 15.8 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA80656.1 - 0.002 18.4 0.3 0.015 15.6 0.3 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 ABA80656.1 - 0.0074 16.2 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 ABA80656.1 - 0.011 15.2 0.1 0.055 12.9 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA80656.1 - 0.017 15.5 0.1 0.029 14.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain TOBE PF03459.17 ABA80656.1 - 0.029 14.6 0.1 1.3 9.4 0.1 2.8 2 0 0 2 2 2 0 TOBE domain AAA_28 PF13521.6 ABA80656.1 - 0.078 13.2 0.1 0.6 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 ABA80656.1 - 0.089 12.2 0.1 0.65 9.4 0.1 2.0 2 0 0 2 2 2 0 Bacterial TniB protein ABC_ATPase PF09818.9 ABA80656.1 - 0.11 11.3 0.0 1 8.1 0.0 2.0 1 1 0 1 1 1 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 ABA80656.1 - 0.12 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase GerE PF00196.19 ABA80657.1 - 1.3e-13 50.2 0.0 2.8e-13 49.2 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 ABA80657.1 - 0.00052 19.5 0.3 0.0021 17.5 0.3 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 ABA80657.1 - 0.0012 18.4 0.1 0.028 14.1 0.0 3.0 3 1 0 3 3 3 1 Sigma-70, region 4 HATPase_c PF02518.26 ABA80660.1 - 2.1e-25 89.4 0.0 3.9e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 ABA80660.1 - 2.7e-21 75.9 0.0 6.4e-21 74.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 ABA80660.1 - 1.1e-18 67.0 0.6 2.7e-17 62.5 0.0 3.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 ABA80660.1 - 4.5e-11 42.9 3.2 1.6e-10 41.1 3.2 2.0 1 0 0 1 1 1 1 Hpt domain PAS_8 PF13188.7 ABA80660.1 - 1.5e-05 24.9 0.3 0.00086 19.3 0.2 3.2 2 1 0 2 2 2 1 PAS domain PAS_4 PF08448.10 ABA80660.1 - 9.7e-05 22.6 2.5 0.18 12.1 0.1 3.5 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 ABA80660.1 - 0.0041 17.1 0.2 0.51 10.3 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 ABA80660.1 - 0.083 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 ABA80660.1 - 0.17 12.1 0.2 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 PAS fold Response_reg PF00072.24 ABA80661.1 - 8.4e-29 100.0 0.4 2.4e-28 98.6 0.3 1.8 2 1 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA80661.1 - 2e-26 91.9 0.1 2e-25 88.7 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal TusA PF01206.17 ABA80661.1 - 0.11 12.3 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA Cytochrom_NNT PF03264.14 ABA80662.1 - 1.7e-72 242.8 5.1 7.4e-72 240.7 3.8 2.0 2 0 0 2 2 2 1 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C7 PF14522.6 ABA80662.1 - 3.2e-10 39.9 11.0 1.4e-05 25.0 1.5 3.4 3 0 0 3 3 3 2 Cytochrome c7 and related cytochrome c Cytochrom_CIII PF02085.16 ABA80662.1 - 1.7e-05 25.1 15.0 0.0029 17.9 1.9 2.9 3 0 0 3 3 3 2 Class III cytochrome C family Cytochrom_c3_2 PF14537.6 ABA80662.1 - 4.6e-05 23.8 16.4 0.024 15.1 4.1 3.1 3 0 0 3 3 3 2 Cytochrome c3 Paired_CXXCH_1 PF09699.10 ABA80662.1 - 0.00016 21.3 18.1 0.097 12.4 1.6 4.8 3 1 2 5 5 5 3 Doubled CXXCH motif (Paired_CXXCH_1) DHC PF09626.10 ABA80662.1 - 0.00023 22.0 17.9 0.087 13.7 0.0 5.5 3 1 4 7 7 7 2 Dihaem cytochrome c His_Me_b4a2 PF18275.1 ABA80662.1 - 0.0014 18.6 7.2 0.048 13.7 0.0 3.4 3 0 0 3 3 3 1 His-Me finger endonuclease beta4-alpha2 domain Cytochrom_C552 PF02335.15 ABA80662.1 - 0.0052 15.8 8.1 0.12 11.3 0.5 2.7 3 0 0 3 3 3 2 Cytochrome c552 SH3_4 PF06347.13 ABA80662.1 - 0.015 15.1 0.3 0.05 13.4 0.3 1.9 1 0 0 1 1 1 0 Bacterial SH3 domain Cytochrom_C1 PF02167.15 ABA80662.1 - 0.037 13.8 4.6 3 7.5 0.2 3.2 3 0 0 3 3 3 0 Cytochrome C1 family Cytochrom_C PF00034.21 ABA80662.1 - 0.14 13.3 18.0 9.3 7.5 1.8 5.2 2 1 1 3 3 3 0 Cytochrome c Cytochrom_C550 PF14495.6 ABA80662.1 - 0.19 11.4 0.0 0.19 11.4 0.0 3.6 4 1 1 5 5 4 0 Cytochrome c-550 domain Cytochrome_C554 PF13435.6 ABA80662.1 - 0.66 10.9 19.3 27 5.8 3.4 4.0 2 1 1 3 3 3 0 Cytochrome c554 and c-prime GSu_C4xC__C2xCH PF09698.10 ABA80662.1 - 0.67 10.8 22.2 7.8 7.4 1.5 5.1 4 1 0 4 4 4 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) zinc_ribbon_15 PF17032.5 ABA80662.1 - 1.9 9.3 7.3 3.4 8.5 0.5 2.5 2 0 0 2 2 2 0 zinc-ribbon family GF_recep_IV PF14843.6 ABA80662.1 - 5.6 6.8 9.7 0.84 9.4 0.8 2.8 3 0 0 3 3 3 0 Growth factor receptor domain IV Cytochrome_CBB3 PF13442.6 ABA80662.1 - 6 7.3 23.2 29 5.1 0.5 5.6 3 3 1 5 5 5 0 Cytochrome C oxidase, cbb3-type, subunit III Haem_bd PF14376.6 ABA80662.1 - 6.4 6.7 18.5 3.3 7.7 0.3 4.5 3 2 1 4 4 4 0 Haem-binding domain Nitrate_red_del PF02613.15 ABA80663.1 - 1.1e-22 80.6 0.0 2.1e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Nitrate reductase delta subunit Molybdopterin PF00384.22 ABA80664.1 - 1.7e-92 310.7 0.0 2.4e-92 310.2 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 ABA80664.1 - 1.4e-21 76.6 0.0 2.7e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin_N PF18364.1 ABA80664.1 - 2.4e-16 59.4 0.0 1.3e-15 57.1 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin oxidoreductase N-terminal domain TAT_signal PF10518.9 ABA80664.1 - 0.096 12.6 0.2 0.31 11.0 0.2 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MoeA_N PF03453.17 ABA80665.1 - 4.8e-39 133.6 2.8 7.7e-39 133.0 2.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 ABA80665.1 - 3.2e-23 82.0 0.0 5.2e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 ABA80665.1 - 3.3e-10 40.0 0.1 1.1e-09 38.3 0.0 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Mob_synth_C PF06463.13 ABA80666.1 - 2.6e-35 121.1 0.0 5.9e-35 120.0 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 ABA80666.1 - 1.6e-30 106.7 0.0 2.5e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 ABA80666.1 - 6.5e-09 36.2 0.0 1.9e-08 34.6 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 ABA80666.1 - 7e-07 29.4 0.0 2e-06 27.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF839 PF05787.13 ABA80667.1 - 3.5e-191 636.9 0.8 4.1e-191 636.7 0.8 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF839) TAT_signal PF10518.9 ABA80667.1 - 0.0011 18.7 2.1 0.0023 17.7 2.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Reg_prop PF07494.11 ABA80667.1 - 0.16 12.3 0.1 0.52 10.7 0.1 1.9 1 0 0 1 1 1 0 Two component regulator propeller LysR_substrate PF03466.20 ABA80668.1 - 7.9e-25 87.5 8.4 1.3e-24 86.7 8.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80668.1 - 3.4e-14 52.5 0.9 6.9e-14 51.5 0.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA80668.1 - 0.0011 18.8 0.2 0.0035 17.1 0.2 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Glyoxalase PF00903.25 ABA80669.1 - 5.2e-23 81.6 0.1 3.9e-10 40.0 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Hydrolase_4 PF12146.8 ABA80670.1 - 1.6e-09 37.4 0.0 5e-05 22.7 0.0 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 ABA80670.1 - 1.1e-07 31.8 0.0 0.001 18.8 0.0 2.6 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 ABA80670.1 - 4.7e-07 29.8 0.0 1.7e-06 28.0 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 ABA80670.1 - 0.00015 21.4 0.0 0.00019 21.1 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 ABA80670.1 - 0.00015 21.8 0.0 0.00041 20.4 0.0 1.6 2 0 0 2 2 2 1 TAP-like protein Peptidase_S9 PF00326.21 ABA80670.1 - 0.00067 19.2 0.0 0.026 14.0 0.0 2.4 2 1 1 3 3 3 1 Prolyl oligopeptidase family FSH1 PF03959.13 ABA80670.1 - 0.0012 18.5 0.0 0.026 14.2 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) LIP PF03583.14 ABA80670.1 - 0.049 12.9 0.0 0.079 12.3 0.0 1.3 1 0 0 1 1 1 0 Secretory lipase VirJ PF06057.11 ABA80670.1 - 0.11 12.3 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial virulence protein (VirJ) SH3_3 PF08239.11 ABA80671.1 - 4.2e-06 26.9 0.0 6.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial SH3 domain MarR_2 PF12802.7 ABA80672.1 - 7.4e-13 48.2 2.4 7.9e-13 48.1 1.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.22 ABA80672.1 - 1.7e-05 24.6 0.0 4.8e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 ABA80672.1 - 0.012 16.1 0.1 0.027 14.9 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_34 PF13601.6 ABA80672.1 - 0.08 13.1 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TonB_dep_Rec PF00593.24 ABA80673.1 - 1.3e-27 97.9 19.3 2.3e-27 97.0 18.8 1.7 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 ABA80673.1 - 5e-09 36.7 0.3 1.4e-08 35.3 0.3 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 ABA80673.1 - 0.019 14.0 0.0 1.6 7.6 0.0 2.4 2 0 0 2 2 2 0 Outer membrane protein beta-barrel family PCP PF02429.15 ABA80673.1 - 0.17 12.2 2.2 1.3 9.3 0.4 2.2 1 1 1 2 2 2 0 Peridinin-chlorophyll A binding protein ABC_tran PF00005.27 ABA80674.2 - 1.9e-32 112.6 0.0 3.4e-32 111.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80674.2 - 1.4e-05 25.1 0.3 0.077 12.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA80674.2 - 0.00025 20.7 0.2 0.0005 19.8 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain CBS PF00571.28 ABA80674.2 - 0.00045 20.6 0.0 0.0012 19.3 0.0 1.7 1 0 0 1 1 1 1 CBS domain ABC_ATPase PF09818.9 ABA80674.2 - 0.00047 19.1 1.2 0.38 9.5 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 ABA80674.2 - 0.00053 19.9 0.0 0.00094 19.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 ABA80674.2 - 0.00098 19.4 0.0 0.0028 17.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain Adeno_IVa2 PF02456.15 ABA80674.2 - 0.0058 15.5 0.1 0.013 14.4 0.0 1.5 2 0 0 2 2 2 1 Adenovirus IVa2 protein ATPase_2 PF01637.18 ABA80674.2 - 0.0075 16.2 0.1 0.17 11.8 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 ABA80674.2 - 0.0076 16.7 1.3 0.034 14.5 1.3 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 ABA80674.2 - 0.013 14.9 0.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80674.2 - 0.02 15.4 0.4 0.034 14.6 0.4 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA80674.2 - 0.029 14.1 0.0 0.076 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA80674.2 - 0.064 13.2 0.2 0.76 9.7 0.1 2.6 1 1 1 2 2 2 0 NACHT domain AAA_33 PF13671.6 ABA80674.2 - 0.082 13.1 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA80674.2 - 0.088 12.9 0.1 0.23 11.6 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.18 ABA80674.2 - 0.11 12.3 0.0 0.37 10.5 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase cobW PF02492.19 ABA80674.2 - 0.14 11.7 0.3 0.25 10.9 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 ABA80674.2 - 0.16 11.6 1.6 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 ABA80674.2 - 0.29 9.9 0.0 0.42 9.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) BPD_transp_1 PF00528.22 ABA80675.1 - 1.6e-27 96.5 10.7 1.6e-27 96.5 10.7 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Wzy_C PF04932.15 ABA80675.1 - 0.18 11.4 8.2 0.85 9.2 8.2 2.1 1 1 0 1 1 1 0 O-Antigen ligase ATG_C PF09333.11 ABA80675.1 - 0.66 10.4 2.1 1.1 9.7 0.1 2.3 3 1 0 3 3 3 0 Autophagy-related protein C terminal domain OpuAC PF04069.12 ABA80676.1 - 4e-58 197.0 0.1 4.7e-58 196.8 0.1 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Hexapep PF00132.24 ABA80677.2 - 2.1e-11 43.1 17.3 3.4e-08 32.9 7.2 3.0 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA80677.2 - 5.5e-05 22.8 13.6 0.00029 20.5 6.7 2.6 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase PP-binding PF00550.25 ABA80678.1 - 0.14 12.5 0.1 0.33 11.3 0.0 1.7 2 0 0 2 2 2 0 Phosphopantetheine attachment site adh_short_C2 PF13561.6 ABA80679.1 - 3.7e-49 167.4 0.1 5.2e-49 166.9 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80679.1 - 3.7e-45 153.8 0.1 4.7e-45 153.4 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 ABA80679.1 - 7.1e-06 25.7 0.1 8e-05 22.2 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 ABA80679.1 - 1.1e-05 25.4 1.0 9.1e-05 22.4 1.0 1.9 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 ABA80679.1 - 0.014 14.5 0.0 0.026 13.6 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 ABA80679.1 - 0.069 12.5 0.0 0.65 9.3 0.0 2.1 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase AMP-binding PF00501.28 ABA80680.1 - 4.4e-43 147.4 2.6 2.7e-33 115.2 0.2 2.8 1 1 1 2 2 2 2 AMP-binding enzyme AMP-binding_C PF13193.6 ABA80680.1 - 6.6e-13 49.4 1.0 1.9e-12 47.9 1.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GH3 PF03321.13 ABA80680.1 - 0.12 11.2 0.0 0.24 10.2 0.0 1.4 2 0 0 2 2 2 0 GH3 auxin-responsive promoter DeoRC PF00455.22 ABA80681.1 - 2.9e-37 128.1 0.0 3.6e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 ABA80681.1 - 1.1e-10 41.0 0.0 2e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.21 ABA80681.1 - 1e-07 31.5 0.5 3e-07 30.0 0.5 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 ABA80681.1 - 4.6e-06 26.5 0.0 9.4e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HemN_C PF06969.16 ABA80681.1 - 0.021 14.8 0.1 0.048 13.7 0.1 1.5 1 0 0 1 1 1 0 HemN C-terminal domain Rrf2 PF02082.20 ABA80681.1 - 0.034 14.5 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 ABA80681.1 - 0.084 12.9 1.1 0.14 12.2 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_15 PF12324.8 ABA80681.1 - 0.096 12.6 0.4 0.24 11.4 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_12 PF08461.10 ABA80681.1 - 0.11 12.5 0.1 0.44 10.5 0.0 2.0 1 1 0 2 2 2 0 Ribonuclease R winged-helix domain TrmB PF01978.19 ABA80681.1 - 0.12 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 ABA80681.1 - 0.13 12.4 2.6 0.17 12.1 0.1 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain MFS_1 PF07690.16 ABA80682.1 - 4.1e-20 72.0 64.8 3.7e-12 45.8 31.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 ABA80682.1 - 0.037 12.8 0.1 0.037 12.8 0.1 1.5 2 0 0 2 2 2 0 LacY proton/sugar symporter DUF4225 PF13988.6 ABA80682.1 - 0.26 10.8 0.3 0.68 9.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) MFS_1_like PF12832.7 ABA80682.1 - 0.56 9.0 6.4 1.4 7.7 6.4 1.7 1 0 0 1 1 1 0 MFS_1 like family DUF4212 PF13937.6 ABA80682.1 - 1.4 9.4 4.1 0.97 9.9 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) DUF4440 PF14534.6 ABA80683.1 - 0.029 14.8 0.4 3.4 8.1 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) FMN_red PF03358.15 ABA80685.1 - 4.6e-34 117.4 0.0 5.3e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 ABA80685.1 - 1.8e-08 34.3 0.0 2.5e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold AIRS_C PF02769.22 ABA80685.1 - 0.1 12.7 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain DUF4147 PF13660.6 ABA80686.1 - 8e-73 244.8 3.3 1.3e-72 244.0 3.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 ABA80686.1 - 3.1e-28 98.1 2.1 1e-27 96.5 2.1 1.9 1 0 0 1 1 1 1 MOFRL family NAD_binding_10 PF13460.6 ABA80687.1 - 3.4e-23 82.5 0.0 1.2e-22 80.7 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 ABA80687.1 - 8.4e-10 38.6 0.0 4.4e-09 36.2 0.0 1.9 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 ABA80687.1 - 2.3e-09 37.1 0.0 6.1e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA80687.1 - 0.01 15.2 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase adh_short PF00106.25 ABA80687.1 - 0.017 14.6 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Glyco_trans_4_4 PF13579.6 ABA80687.1 - 0.02 15.3 4.5 0.047 14.1 4.5 1.7 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Sacchrp_dh_NADP PF03435.18 ABA80687.1 - 0.04 14.2 0.0 0.07 13.4 0.0 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 ABA80687.1 - 0.045 12.8 0.0 0.2 10.7 0.0 1.9 2 0 0 2 2 2 0 RmlD substrate binding domain GSDH PF07995.11 ABA80688.1 - 1.6e-07 31.0 0.4 4.3e-07 29.6 0.2 1.9 2 0 0 2 2 2 1 Glucose / Sorbosone dehydrogenase YkuD PF03734.14 ABA80689.1 - 6.9e-15 55.7 0.1 8.9e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain TAT_signal PF10518.9 ABA80689.1 - 0.16 11.8 1.2 0.24 11.3 1.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ILVD_EDD PF00920.21 ABA80690.1 - 1.7e-223 742.9 2.6 1.9e-223 742.8 2.6 1.0 1 0 0 1 1 1 1 Dehydratase family FGE-sulfatase PF03781.16 ABA80691.1 - 1.1e-34 120.2 4.4 1.4e-25 90.4 1.5 2.1 2 0 0 2 2 2 2 Sulfatase-modifying factor enzyme 1 DinB_2 PF12867.7 ABA80691.1 - 1.4e-08 35.3 5.7 1.4e-08 35.3 5.7 2.5 2 1 0 2 2 2 1 DinB superfamily Methyltransf_33 PF10017.9 ABA80692.1 - 9.6e-105 350.1 0.0 1.1e-104 349.9 0.0 1.0 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Methyltransf_25 PF13649.6 ABA80692.1 - 0.0091 16.7 0.0 0.046 14.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain DPRP PF04244.13 ABA80693.1 - 2e-76 256.8 0.0 2.9e-76 256.3 0.0 1.2 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein CDI PF02234.19 ABA80693.1 - 0.041 14.1 0.1 0.14 12.4 0.1 1.9 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor DNA_photolyase PF00875.18 ABA80693.1 - 0.046 13.7 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 DNA photolyase DUF2218 PF09981.9 ABA80694.1 - 3.2e-31 107.6 0.0 3.5e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2218) Peripla_BP_2 PF01497.18 ABA80695.1 - 2.7e-27 95.9 0.0 3.4e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein BCCT PF02028.17 ABA80696.1 - 1.5e-173 577.8 39.4 1.7e-173 577.6 39.4 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter ABC_membrane PF00664.23 ABA80697.1 - 6.7e-49 167.0 4.5 9e-49 166.6 4.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 ABA80697.1 - 2.8e-35 121.8 0.0 4.4e-35 121.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA80697.1 - 4e-07 29.7 0.0 3.3e-06 26.7 0.0 1.9 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA80697.1 - 0.00017 22.0 0.1 0.00048 20.5 0.1 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA80697.1 - 0.004 17.6 0.0 0.037 14.4 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 ABA80697.1 - 0.0044 16.7 0.0 0.013 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA80697.1 - 0.0055 17.0 0.0 0.089 13.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 ABA80697.1 - 0.015 14.1 0.1 0.14 10.9 0.0 2.3 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_29 PF13555.6 ABA80697.1 - 0.016 14.9 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3584 PF12128.8 ABA80697.1 - 0.033 11.7 0.0 0.046 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 ABA80697.1 - 0.036 14.0 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase DEAD PF00270.29 ABA80697.1 - 0.19 11.5 0.0 0.94 9.2 0.0 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase ABC_membrane_3 PF13748.6 ABA80697.1 - 3.4 6.8 12.6 1 8.6 4.0 2.8 2 1 1 3 3 3 0 ABC transporter transmembrane region DUF2934 PF11154.8 ABA80698.1 - 1.8e-15 56.3 12.0 1.8e-15 56.3 12.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2934) MCPsignal PF00015.21 ABA80699.1 - 1.2e-29 103.3 19.7 1.2e-29 103.3 19.7 3.9 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 ABA80699.1 - 1.4e-15 57.3 2.5 1.4e-15 57.3 2.5 3.2 4 0 0 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 ABA80699.1 - 3e-05 24.3 1.1 3e-05 24.3 1.1 4.2 5 0 0 5 5 5 1 HAMP domain TarH PF02203.15 ABA80699.1 - 0.0036 17.2 10.2 0.0036 17.2 10.2 4.3 3 2 2 5 5 5 1 Tar ligand binding domain homologue Nha1_C PF08619.10 ABA80700.1 - 0.097 11.9 2.0 0.11 11.6 2.0 1.2 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus Sulfatase PF00884.23 ABA80701.1 - 6.3e-44 150.6 0.0 9e-44 150.1 0.0 1.2 1 0 0 1 1 1 1 Sulfatase EptA_B_N PF08019.12 ABA80701.1 - 3.7e-36 124.3 0.1 5.4e-36 123.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoethanolamine transferase EptA/EptB DAGK_prokar PF01219.19 ABA80702.1 - 2.6e-18 65.7 1.6 3.1e-18 65.5 1.6 1.1 1 0 0 1 1 1 1 Prokaryotic diacylglycerol kinase HisKA PF00512.25 ABA80703.1 - 2.3e-10 40.3 3.8 3.4e-10 39.8 2.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 ABA80703.1 - 4.8e-06 27.0 0.0 7.8e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2CSK_N PF08521.10 ABA80703.1 - 0.0021 18.1 0.4 0.0021 18.1 0.4 3.2 3 1 0 3 3 3 1 Two-component sensor kinase N-terminal CHASE3 PF05227.13 ABA80703.1 - 0.071 13.0 4.1 0.17 11.8 4.1 1.7 1 0 0 1 1 1 0 CHASE3 domain RAMP PF04901.13 ABA80703.1 - 0.2 11.6 0.1 0.34 10.9 0.1 1.2 1 0 0 1 1 1 0 Receptor activity modifying family Response_reg PF00072.24 ABA80704.1 - 7.5e-25 87.3 0.0 1.1e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA80704.1 - 3.1e-21 75.2 0.2 5.4e-21 74.5 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 ABA80704.1 - 0.02 14.4 0.0 2.3 7.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family NgoMIV_restric PF09015.10 ABA80704.1 - 0.095 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 NgoMIV restriction enzyme GFA PF04828.14 ABA80705.1 - 1.4e-17 63.8 0.0 2.2e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.7 ABA80705.1 - 1.7 8.7 7.6 1.9 8.5 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-CSL PF05207.13 ABA80705.1 - 5.5 6.8 7.0 6.8 6.5 0.1 2.3 2 0 0 2 2 2 0 CSL zinc finger PhnA PF03831.14 ABA80706.2 - 3.7e-32 110.0 3.8 4.5e-32 109.7 3.8 1.1 1 0 0 1 1 1 1 PhnA domain PhnA_Zn_Ribbon PF08274.12 ABA80706.2 - 9.4e-13 47.9 5.2 1.5e-12 47.2 5.2 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon UPF0547 PF10571.9 ABA80706.2 - 0.0004 20.4 5.2 0.0031 17.5 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 HypA PF01155.19 ABA80706.2 - 0.0035 17.4 0.1 0.0065 16.5 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 ABA80706.2 - 0.0045 16.7 0.9 1.7 8.4 0.0 2.3 1 1 1 2 2 2 2 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.13 ABA80706.2 - 0.0059 16.3 0.2 0.016 14.9 0.2 1.7 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 ABA80706.2 - 0.0097 15.8 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 ABA80706.2 - 0.036 14.1 0.8 0.062 13.3 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon Anti-TRAP PF15777.5 ABA80706.2 - 0.038 14.0 2.6 0.077 13.0 2.6 1.6 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_4 PF13717.6 ABA80706.2 - 0.039 13.9 1.3 1.3 9.0 1.3 2.6 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 ABA80706.2 - 0.05 13.1 3.2 0.26 10.8 3.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 ABA80706.2 - 0.079 12.9 0.3 0.14 12.1 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.18 ABA80706.2 - 0.16 11.9 3.1 2 8.3 0.4 2.6 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_9 PF14369.6 ABA80706.2 - 0.44 10.8 5.2 8.6 6.7 0.3 2.4 1 1 1 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 ABA80706.2 - 0.45 10.7 6.2 4.1 7.6 5.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain PADR1 PF08063.12 ABA80706.2 - 0.66 9.8 5.6 19 5.1 5.6 2.2 1 1 0 1 1 1 0 PADR1 (NUC008) domain zf-RRN7 PF11781.8 ABA80706.2 - 0.74 9.6 4.9 5.2 6.8 4.9 2.0 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 ABA80706.2 - 1.3 8.9 0.0 1.3 8.9 0.0 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 ABA80706.2 - 1.3 8.6 0.1 1.3 8.6 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DUF4157 PF13699.6 ABA80707.1 - 2.3e-17 63.0 0.0 2.3e-17 63.0 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) DUF2076 PF09849.9 ABA80708.1 - 9.7e-49 166.7 15.1 1.2e-48 166.5 15.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2076) UPF0242 PF06785.11 ABA80708.1 - 0.035 14.2 0.1 0.046 13.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 ABA80708.1 - 0.036 13.8 0.3 0.064 13.0 0.3 1.3 1 0 0 1 1 1 0 Septum formation initiator Bax1-I PF01027.20 ABA80709.1 - 1e-63 214.9 32.2 1.2e-63 214.7 32.2 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 zf-HC2 PF13490.6 ABA80710.2 - 6e-05 23.2 0.8 0.00029 21.0 0.2 2.4 2 0 0 2 2 2 1 Putative zinc-finger LPD22 PF18834.1 ABA80710.2 - 0.096 12.9 3.5 0.71 10.1 0.3 2.8 2 1 0 2 2 2 0 Large polyvalent protein associated domain 22 Acetyltransf_6 PF13480.7 ABA80710.2 - 0.22 11.6 7.5 0.55 10.4 5.0 2.3 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Sigma70_r2 PF04542.14 ABA80711.1 - 3.6e-18 65.1 2.3 6.6e-18 64.2 2.3 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 ABA80711.1 - 3.1e-16 58.8 3.0 5.7e-16 57.9 0.5 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA80711.1 - 2.9e-10 39.5 0.2 6.9e-10 38.3 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 ABA80711.1 - 1.2e-05 25.2 5.8 2.3e-05 24.4 5.8 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 ABA80711.1 - 0.0014 18.4 1.3 0.0024 17.6 0.0 2.1 2 1 0 2 2 2 1 Homeodomain-like domain HTH_psq PF05225.16 ABA80711.1 - 0.0046 16.7 0.0 0.0091 15.7 0.0 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_1 PF00126.27 ABA80711.1 - 0.014 15.3 0.5 0.014 15.3 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF134 PF02001.16 ABA80711.1 - 0.039 14.5 0.1 0.079 13.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF134 HTH_3 PF01381.22 ABA80711.1 - 0.091 12.8 0.0 1.2 9.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix COX1 PF00115.20 ABA80713.1 - 6.3e-134 447.1 60.9 6.3e-134 447.1 60.9 2.9 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 ABA80714.2 - 1.1e-13 51.2 0.1 3.4e-11 43.1 0.0 2.2 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain UPF0093 PF03653.13 ABA80715.1 - 2e-13 50.8 4.5 2.7e-13 50.4 4.5 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0093) DUF2269 PF10027.9 ABA80715.1 - 0.005 16.9 12.4 0.0068 16.5 12.4 1.3 1 1 0 1 1 1 1 Predicted integral membrane protein (DUF2269) CopD PF05425.13 ABA80715.1 - 0.6 10.5 15.6 0.25 11.8 12.8 1.7 1 1 1 2 2 2 0 Copper resistance protein D FA_desaturase PF00487.24 ABA80715.1 - 0.82 9.4 10.0 0.93 9.3 9.4 1.4 1 1 0 1 1 1 0 Fatty acid desaturase EAL PF00563.20 ABA80716.1 - 5e-62 209.5 0.2 1.5e-61 207.9 0.1 1.8 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 ABA80716.1 - 3.1e-42 144.1 0.0 6.8e-42 143.0 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CHASE4 PF05228.13 ABA80716.1 - 9.2e-22 77.7 0.1 1.9e-21 76.7 0.1 1.5 1 0 0 1 1 1 1 CHASE4 domain DUF4651 PF15513.6 ABA80716.1 - 0.045 13.6 0.0 0.096 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) DUF448 PF04296.13 ABA80716.1 - 0.072 13.0 0.2 0.71 9.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF448) MttA_Hcf106 PF02416.16 ABA80717.1 - 2.4e-07 30.0 0.3 2.6e-07 29.9 0.3 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family Polyketide_cyc2 PF10604.9 ABA80718.1 - 3.5e-10 40.3 2.3 5.2e-10 39.8 2.3 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 ABA80718.1 - 1e-09 38.7 0.1 1.4e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 ABA80718.1 - 0.0023 18.2 0.0 0.0032 17.7 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein PEP-CTERM PF07589.11 ABA80718.1 - 0.062 13.4 1.3 0.16 12.1 1.3 1.8 1 0 0 1 1 1 0 PEP-CTERM motif ADH_N PF08240.12 ABA80719.1 - 1.1e-25 89.6 0.1 2.2e-25 88.7 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA80719.1 - 1.3e-17 64.0 0.3 1.3e-13 51.0 0.1 2.3 2 0 0 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 ABA80719.1 - 6.6e-11 41.9 0.1 1.2e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated AlaDh_PNT_C PF01262.21 ABA80719.1 - 0.0008 18.8 0.1 0.0013 18.1 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 ABA80719.1 - 0.0059 16.1 0.1 0.02 14.4 0.1 1.8 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 ABA80719.1 - 0.076 12.4 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAS_3 PF08447.12 ABA80720.1 - 1.8e-45 153.1 0.0 5.7e-21 74.6 0.3 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 ABA80720.1 - 1.1e-22 80.3 8.4 2.1e-12 47.3 0.1 4.7 5 0 0 5 5 5 3 PAS fold PAS PF00989.25 ABA80720.1 - 6.3e-19 68.0 0.0 1.8e-10 40.8 0.0 4.4 4 0 0 4 4 4 2 PAS fold HWE_HK PF07536.14 ABA80720.1 - 7.2e-17 61.9 0.0 1.4e-16 61.0 0.0 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 ABA80720.1 - 8.2e-10 38.9 0.0 1.9e-06 28.0 0.0 3.4 3 0 0 3 3 3 1 PAS domain PAS_8 PF13188.7 ABA80720.1 - 1e-07 31.8 0.1 0.002 18.1 0.0 3.6 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 ABA80720.1 - 1.4e-05 25.0 0.0 5.3e-05 23.2 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_2 PF07568.12 ABA80720.1 - 0.00067 19.7 0.1 0.00067 19.7 0.1 2.1 3 0 0 3 3 3 1 Histidine kinase PAS_11 PF14598.6 ABA80720.1 - 0.038 14.1 0.0 0.92 9.6 0.0 2.4 2 0 0 2 2 2 0 PAS domain PAS_7 PF12860.7 ABA80720.1 - 0.053 13.7 0.0 2.5 8.3 0.0 3.3 3 0 0 3 3 3 0 PAS fold Trns_repr_metal PF02583.17 ABA80722.1 - 1.6e-19 70.0 2.2 1.9e-19 69.8 2.2 1.0 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor MCPsignal PF00015.21 ABA80723.1 - 5.4e-31 107.7 34.4 1.4e-30 106.3 18.3 3.0 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 ABA80723.1 - 1.7e-10 40.7 0.7 1.7e-10 40.7 0.7 2.8 3 0 0 3 3 3 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 ABA80723.1 - 1.8e-05 25.0 2.8 1.8e-05 25.0 2.8 4.1 4 2 0 4 4 4 1 HAMP domain DUF4227 PF14004.6 ABA80723.1 - 0.07 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4227) DUF948 PF06103.11 ABA80723.1 - 0.56 10.5 23.2 1.9 8.8 0.6 5.7 4 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) DASH_Dad2 PF08654.10 ABA80723.1 - 0.78 10.2 6.5 0.55 10.7 0.1 3.1 2 1 0 2 2 2 0 DASH complex subunit Dad2 PepSY_TM_like_2 PF16357.5 ABA80723.1 - 1.1 9.2 4.9 0.65 9.9 0.2 2.5 3 0 0 3 3 3 0 Putative PepSY_TM-like Vps53_N PF04100.12 ABA80723.1 - 2.5 7.0 5.1 4 6.3 1.1 2.2 1 1 1 2 2 2 0 Vps53-like, N-terminal MarR_2 PF12802.7 ABA80724.1 - 2.3e-09 37.0 3.1 3.7e-09 36.4 0.7 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 ABA80724.1 - 3.9e-09 36.3 0.0 6.2e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 ABA80724.1 - 2.2e-08 34.5 0.0 3e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 ABA80724.1 - 4.5e-06 26.2 0.2 1.1e-05 25.0 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 ABA80724.1 - 0.00037 20.3 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 ABA80724.1 - 0.0011 18.9 0.2 0.0018 18.2 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 ABA80724.1 - 0.0031 17.6 2.8 0.0039 17.2 0.1 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 ABA80724.1 - 0.0065 16.6 0.0 0.0099 16.1 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 ABA80724.1 - 0.0085 15.9 0.2 0.028 14.2 0.2 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 ABA80724.1 - 0.03 13.9 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 ABA80724.1 - 0.05 13.4 0.1 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.20 ABA80724.1 - 0.17 12.3 0.0 0.28 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator GST_N_3 PF13417.6 ABA80725.1 - 8.7e-11 42.1 0.0 1.4e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 ABA80725.1 - 8.8e-10 38.7 0.0 1.4e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 ABA80725.1 - 1e-09 38.3 0.2 1.9e-09 37.4 0.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 ABA80725.1 - 1.3e-07 31.8 0.0 2.4e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 ABA80725.1 - 1.6e-06 28.4 0.0 2.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 ABA80725.1 - 5.7e-05 23.2 0.0 8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 ABA80726.1 - 4.7e-10 39.7 0.0 9e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 ABA80726.1 - 1.4e-09 38.2 0.0 2.4e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 ABA80726.1 - 1.9e-07 31.2 0.0 3e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 ABA80726.1 - 1.3e-06 28.5 0.0 2e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 ABA80726.1 - 2.1e-06 27.6 0.4 9.1e-06 25.6 0.4 2.1 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 ABA80726.1 - 5.1e-06 26.7 0.0 8.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain 3-dmu-9_3-mt PF06983.13 ABA80727.1 - 3.6e-43 146.8 0.0 1.1e-42 145.2 0.0 1.6 2 0 0 2 2 2 1 3-demethylubiquinone-9 3-methyltransferase DAO PF01266.24 ABA80728.1 - 2.9e-74 250.7 6.3 3.4e-74 250.5 6.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA80728.1 - 7.4e-10 38.5 0.6 6.3e-05 22.4 0.5 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA80728.1 - 6.1e-09 36.3 1.0 5.9e-06 26.8 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA80728.1 - 3.5e-07 29.7 3.1 0.00015 21.0 0.9 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 ABA80728.1 - 9.4e-07 27.9 0.2 0.037 12.7 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 ABA80728.1 - 7.3e-06 26.1 0.1 2.6e-05 24.4 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 ABA80728.1 - 7.5e-06 25.7 0.1 1.3e-05 24.9 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 ABA80728.1 - 2.9e-05 23.7 0.1 5.8e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.6 ABA80728.1 - 4.3e-05 22.9 0.1 0.057 12.7 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 ABA80728.1 - 5.3e-05 22.7 0.1 0.021 14.1 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 ABA80728.1 - 8.1e-05 22.6 1.3 0.00011 22.1 0.3 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 ABA80728.1 - 0.00027 20.3 0.2 0.00046 19.6 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 ABA80728.1 - 0.0011 18.1 2.0 0.018 14.2 0.5 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A TrkA_N PF02254.18 ABA80728.1 - 0.0029 17.9 0.2 0.012 15.8 0.1 2.1 2 0 0 2 2 2 1 TrkA-N domain FAD_binding_3 PF01494.19 ABA80728.1 - 0.0043 16.3 0.2 0.0079 15.5 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 ABA80728.1 - 0.011 16.2 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.15 ABA80728.1 - 0.012 15.8 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 ABA80728.1 - 0.02 15.5 0.0 0.042 14.4 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent FAD_oxidored PF12831.7 ABA80728.1 - 0.025 13.9 4.4 0.16 11.3 2.6 2.4 2 1 1 3 3 3 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 ABA80728.1 - 0.033 14.2 0.8 3.4 7.6 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Glyco_transf_4 PF13439.6 ABA80728.1 - 0.037 14.0 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Sacchrp_dh_NADP PF03435.18 ABA80728.1 - 0.038 14.2 0.1 0.065 13.5 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 ABA80728.1 - 0.04 13.1 0.2 0.069 12.4 0.2 1.3 1 0 0 1 1 1 0 Thi4 family Trp_halogenase PF04820.14 ABA80728.1 - 0.041 12.7 4.6 0.7 8.7 0.3 2.5 3 0 0 3 3 3 0 Tryptophan halogenase XdhC_C PF13478.6 ABA80728.1 - 0.067 13.7 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Peptidase_Mx PF15887.5 ABA80729.1 - 1.4e-91 306.1 0.1 1.6e-91 305.9 0.1 1.0 1 0 0 1 1 1 1 Putative zinc-binding metallo-peptidase zinc-ribbon_6 PF10005.9 ABA80729.1 - 3.9e-13 49.9 6.8 1.1e-10 42.0 6.8 2.3 1 1 0 1 1 1 1 zinc-ribbon domain Peptidase_Mx1 PF15890.5 ABA80729.1 - 0.022 14.2 0.0 0.052 13.0 0.0 1.5 1 1 0 1 1 1 0 Putative zinc-binding metallo-peptidase DZR PF12773.7 ABA80729.1 - 2.1 8.5 8.4 0.53 10.4 1.9 1.9 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 ABA80729.1 - 9.3 5.8 7.1 0.32 10.5 0.4 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Transgly_assoc PF04226.13 ABA80730.1 - 4.8e-16 58.8 21.1 1.2e-14 54.2 16.9 2.2 1 1 1 2 2 2 2 Transglycosylase associated protein DUF5518 PF17647.1 ABA80730.1 - 0.024 14.8 15.4 0.044 13.9 15.4 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5518) DUF2929 PF11151.8 ABA80730.1 - 0.11 12.8 12.3 0.084 13.2 6.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2929) ECF-ribofla_trS PF07155.12 ABA80730.1 - 0.15 12.0 8.8 0.34 10.9 8.8 1.5 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component ABC2_membrane PF01061.24 ABA80730.1 - 0.17 11.3 4.2 0.26 10.7 4.2 1.3 1 1 0 1 1 1 0 ABC-2 type transporter Colicin_V PF02674.16 ABA80730.1 - 0.18 11.8 9.5 0.3 11.0 5.0 2.0 2 0 0 2 2 2 0 Colicin V production protein SecY PF00344.20 ABA80730.1 - 1.7 7.8 7.1 2 7.6 7.1 1.2 1 0 0 1 1 1 0 SecY translocase DUF202 PF02656.15 ABA80730.1 - 1.8 9.1 11.1 0.28 11.7 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) FeoB_C PF07664.12 ABA80730.1 - 2.4 7.9 8.0 2 8.1 0.1 2.9 1 1 2 3 3 3 0 Ferrous iron transport protein B C terminus RseC_MucC PF04246.12 ABA80730.1 - 2.7 8.0 4.9 2.8 7.9 3.5 1.7 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Gram_pos_anchor PF00746.21 ABA80730.1 - 2.9 7.9 4.2 7 6.7 0.2 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Gly-zipper_Omp PF13488.6 ABA80730.1 - 5.8 7.0 15.6 0.86 9.7 10.5 2.1 2 1 0 2 2 2 0 Glycine zipper AI-2E_transport PF01594.16 ABA80731.1 - 3.3e-48 164.5 25.0 4e-48 164.3 25.0 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF4271 PF14093.6 ABA80731.1 - 0.32 10.9 8.6 0.55 10.1 1.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4271) ZinT PF09223.11 ABA80732.1 - 9e-81 270.1 0.3 1.1e-80 269.8 0.3 1.0 1 0 0 1 1 1 1 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment NAD_binding_9 PF13454.6 ABA80733.1 - 4.1e-33 114.6 0.0 8e-33 113.6 0.0 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding DAO PF01266.24 ABA80733.1 - 5.8e-06 26.1 0.1 4e-05 23.4 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA80733.1 - 5.7e-05 23.3 0.2 0.00014 22.0 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 ABA80733.1 - 0.0015 17.5 0.3 0.004 16.1 0.3 1.7 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_2 PF00890.24 ABA80733.1 - 0.011 14.9 0.0 0.037 13.1 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain Shikimate_DH PF01488.20 ABA80733.1 - 0.073 13.1 0.7 1.5 8.9 0.2 2.6 3 1 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.27 ABA80733.1 - 0.086 13.4 0.2 0.18 12.4 0.2 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 ABA80733.1 - 0.092 12.0 0.7 0.16 11.2 0.7 1.3 1 0 0 1 1 1 0 FAD binding domain K_oxygenase PF13434.6 ABA80733.1 - 0.11 11.6 0.0 0.59 9.2 0.0 2.1 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 ABA80733.1 - 0.12 12.9 0.0 2.1 8.8 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 ABA80733.1 - 0.13 11.5 0.1 0.57 9.4 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA80733.1 - 0.3 9.7 0.1 0.4 9.3 0.1 1.1 1 0 0 1 1 1 0 HI0933-like protein Ser_hydrolase PF06821.13 ABA80734.1 - 6.2e-47 159.6 0.2 7.2e-47 159.4 0.2 1.0 1 0 0 1 1 1 1 Serine hydrolase Abhydrolase_6 PF12697.7 ABA80734.1 - 1.5e-05 25.8 10.3 1.9e-05 25.4 10.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 ABA80734.1 - 0.00015 21.2 0.1 0.00037 19.8 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 ABA80734.1 - 0.0025 17.5 0.0 0.18 11.4 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold LIDHydrolase PF10230.9 ABA80734.1 - 0.17 11.4 0.1 0.24 10.9 0.1 1.3 1 1 0 1 1 1 0 Lipid-droplet associated hydrolase DoxX PF07681.12 ABA80735.1 - 3.8e-16 59.4 6.8 3.8e-16 59.4 6.8 1.8 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 ABA80735.1 - 6e-07 29.5 3.5 8.5e-07 29.0 3.5 1.2 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX_2 PF13564.6 ABA80735.1 - 8.2e-07 29.1 10.2 8.2e-07 29.1 10.2 1.7 2 1 0 2 2 2 1 DoxX-like family GST_N_2 PF13409.6 ABA80737.1 - 5.5e-19 68.2 0.0 9.4e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 ABA80737.1 - 5.1e-13 48.8 0.3 1e-12 47.9 0.3 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 ABA80737.1 - 6.1e-05 23.2 0.0 0.00023 21.3 0.0 2.0 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 ABA80737.1 - 0.00014 22.0 0.0 0.00027 21.1 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 ABA80737.1 - 0.00016 22.0 0.0 0.0027 18.1 0.0 2.2 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 ABA80737.1 - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain LigB PF02900.18 ABA80738.1 - 2.7e-34 118.5 0.0 3.4e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LysR_substrate PF03466.20 ABA80739.1 - 5.9e-46 156.5 1.9 8.8e-46 155.9 1.9 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80739.1 - 4.4e-19 68.2 0.9 1e-18 67.0 0.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 ABA80739.1 - 0.12 11.8 0.1 0.26 10.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 ABA80740.1 - 2.9e-16 59.3 0.4 2.9e-16 59.3 0.4 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA80740.1 - 5.3e-05 23.0 0.3 8.1e-05 22.4 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 ABA80740.1 - 0.0016 18.2 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 ABA80740.1 - 0.0076 16.6 0.0 0.0084 16.5 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor Rrf2 PF02082.20 ABA80740.1 - 0.034 14.5 0.0 0.053 13.9 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 ABA80740.1 - 0.041 14.4 0.0 0.072 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 ABA80740.1 - 0.067 13.0 0.5 0.28 11.0 0.5 2.0 1 1 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 ABA80740.1 - 0.088 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Dimerisation2 PF16864.5 ABA80740.1 - 0.1 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain SBF PF01758.16 ABA80741.1 - 1.4e-40 139.1 18.7 1.4e-40 139.1 18.7 2.6 2 2 1 3 3 3 1 Sodium Bile acid symporter family DUF3094 PF11293.8 ABA80741.1 - 0.33 10.7 9.5 0.4 10.4 0.2 4.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3094) ArsC PF03960.15 ABA80742.1 - 9.1e-12 44.8 0.0 1.6e-11 44.1 0.0 1.6 1 1 0 1 1 1 1 ArsC family DUF433 PF04255.14 ABA80742.1 - 0.12 12.2 0.1 14 5.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF433) Pkinase PF00069.25 ABA80744.1 - 7.3e-30 104.2 0.0 2.3e-29 102.6 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 ABA80744.1 - 1e-14 54.4 0.0 3.2e-14 52.8 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 ABA80744.1 - 4.4e-05 23.5 0.1 0.00026 21.0 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kinase-like PF14531.6 ABA80744.1 - 0.00012 21.6 0.0 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 Kinase-like Kdo PF06293.14 ABA80744.1 - 0.012 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 ABA80744.1 - 0.029 13.1 0.0 0.041 12.7 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Pox_ser-thr_kin PF05445.11 ABA80744.1 - 0.24 10.3 0.0 0.35 9.8 0.0 1.2 1 0 0 1 1 1 0 Poxvirus serine/threonine protein kinase Trypsin_2 PF13365.6 ABA80745.1 - 2.6e-23 83.6 0.4 5.3e-23 82.6 0.4 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain FHA PF00498.26 ABA80745.1 - 1.2e-12 48.0 0.0 2.2e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 ABA80745.1 - 3.9e-09 36.7 0.0 2.1e-08 34.4 0.0 2.0 2 0 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain Trypsin PF00089.26 ABA80745.1 - 0.00031 20.6 0.0 0.00075 19.4 0.0 1.5 1 1 0 1 1 1 1 Trypsin Peptidase_S7 PF00949.21 ABA80745.1 - 0.13 12.0 0.1 22 4.9 0.0 2.3 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease ABC_tran PF00005.27 ABA80746.1 - 1.2e-20 74.4 0.0 1.9e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80746.1 - 5.2e-05 23.2 0.0 0.00089 19.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA80746.1 - 0.0078 16.0 0.7 0.03 14.0 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 ABA80746.1 - 0.017 14.7 4.5 0.24 10.9 4.5 2.3 1 1 0 1 1 1 0 AAA domain DUF3987 PF13148.6 ABA80746.1 - 0.035 13.1 0.1 0.08 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_22 PF13401.6 ABA80746.1 - 0.048 13.9 0.1 2.4 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 ABA80746.1 - 0.18 11.5 0.0 0.42 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 ABA80746.1 - 0.27 10.6 0.0 1.6 8.1 0.0 1.7 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain FtsX PF02687.21 ABA80747.1 - 0.12 12.9 7.7 0.11 13.0 4.2 2.3 2 0 0 2 2 2 0 FtsX-like permease family FGE-sulfatase PF03781.16 ABA80748.1 - 5.1e-25 88.5 0.0 2.8e-24 86.1 0.0 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Ead_Ea22 PF13935.6 ABA80748.1 - 0.21 12.3 10.2 4.1 8.1 1.1 2.4 1 1 0 2 2 2 0 Ead/Ea22-like protein Pkinase PF00069.25 ABA80750.2 - 4.1e-39 134.5 0.0 5.4e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 ABA80750.2 - 5.4e-26 91.4 0.0 6.9e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 ABA80750.2 - 4.8e-06 26.7 7.1 2e-05 24.7 1.0 3.3 2 2 1 3 3 3 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 ABA80750.2 - 0.0042 15.9 0.0 0.0073 15.1 0.0 1.3 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 ABA80750.2 - 0.0052 16.2 0.0 0.0093 15.3 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-like PF14531.6 ABA80750.2 - 0.052 12.9 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 Kinase-like HEAT_2 PF13646.6 ABA80750.2 - 0.61 10.5 4.5 0.3 11.5 0.2 2.6 3 0 0 3 3 3 0 HEAT repeats VWA_2 PF13519.6 ABA80751.1 - 0.0073 17.0 0.3 0.05 14.3 0.0 2.7 4 0 0 4 4 4 1 von Willebrand factor type A domain VWA PF00092.28 ABA80751.1 - 0.025 14.8 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain TssR PF17643.1 ABA80751.1 - 0.16 9.9 0.0 1.1 7.1 0.0 1.9 2 0 0 2 2 2 0 Type VI secretion system, TssR DUF1593 PF07632.11 ABA80752.1 - 4e-46 157.6 0.1 5.6e-46 157.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1593) CBM60 PF16841.5 ABA80752.1 - 1.1e-28 99.5 10.5 9.7e-23 80.4 0.1 4.7 4 2 1 5 5 5 3 Ca-dependent carbohydrate-binding module xylan-binding DUF642 PF04862.12 ABA80752.1 - 5.9e-07 29.4 0.0 0.017 14.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF642) DUF4627 PF15425.6 ABA80752.1 - 0.0004 20.1 0.0 0.86 9.2 0.0 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF4627) Invasin_D3 PF09134.10 ABA80752.1 - 0.00086 19.6 8.6 0.22 11.9 0.6 2.8 2 0 0 2 2 2 2 Invasin, domain 3 Qn_am_d_aII PF14930.6 ABA80752.1 - 0.0012 19.1 0.1 3.7 7.9 0.0 3.0 2 0 0 2 2 2 2 Quinohemoprotein amine dehydrogenase, alpha subunit domain II IU_nuc_hydro PF01156.19 ABA80752.1 - 0.0021 17.7 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Glyoxalase_3 PF13468.6 ABA80752.1 - 0.0036 17.4 0.3 2.6 8.1 0.0 2.8 3 0 0 3 3 3 2 Glyoxalase-like domain NAD_binding_9 PF13454.6 ABA80753.1 - 2.4e-27 95.8 0.0 3.9e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 ABA80753.1 - 3.8e-06 26.4 0.0 5.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 ABA80753.1 - 0.0027 17.4 0.2 0.5 9.9 0.0 2.7 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA80753.1 - 0.017 15.3 0.0 0.056 13.7 0.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain SGL PF08450.12 ABA80754.1 - 1.5e-65 221.2 0.0 1.8e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region PD40 PF07676.12 ABA80754.1 - 0.09 12.7 0.1 0.27 11.2 0.1 1.8 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat DUF485 PF04341.12 ABA80757.1 - 5.4e-33 112.8 1.6 6e-33 112.7 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF485 ABC2_membrane_4 PF12730.7 ABA80757.1 - 0.01 15.8 0.3 0.013 15.5 0.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.9 ABA80757.1 - 0.1 11.3 0.7 0.11 11.2 0.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PMT_4TMC PF16192.5 ABA80757.1 - 0.19 11.3 3.8 8.4 5.9 0.1 2.0 1 1 1 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase CrgA PF06781.12 ABA80757.1 - 0.21 11.6 2.2 0.28 11.2 2.2 1.2 1 0 0 1 1 1 0 Cell division protein CrgA SSF PF00474.17 ABA80758.1 - 2.8e-112 375.6 43.3 4.6e-112 374.8 43.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2818 PF10993.8 ABA80758.1 - 0.0095 16.5 0.2 0.0095 16.5 0.2 3.8 4 1 0 4 4 4 1 Protein of unknown function (DUF2818) DUF1629 PF07791.11 ABA80758.1 - 0.18 11.9 0.1 3.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1629) NIPSNAP PF07978.13 ABA80759.1 - 9.7e-28 96.4 0.0 1.1e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 NIPSNAP Cons_hypoth698 PF03601.14 ABA80760.1 - 1.5e-66 224.3 22.6 1.5e-66 224.3 22.6 1.2 1 1 0 1 1 1 1 Conserved hypothetical protein 698 Fumerase_C PF05683.12 ABA80761.1 - 1.4e-20 73.5 0.0 1.6e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 ABA80762.1 - 9e-65 218.8 0.0 1e-64 218.6 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) ParD PF09386.10 ABA80762.1 - 0.07 13.5 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Antitoxin ParD DUF1778 PF08681.11 ABA80762.1 - 0.086 12.8 0.3 0.23 11.4 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1778) FAD_binding_2 PF00890.24 ABA80763.1 - 9.9e-69 232.4 11.2 1.3e-68 232.0 11.2 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 ABA80763.1 - 7.1e-23 81.0 0.0 1.2e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 ABA80763.1 - 5.3e-05 23.0 0.5 5.3e-05 23.0 0.5 2.4 2 2 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 ABA80763.1 - 0.026 13.8 2.4 0.29 10.3 0.3 2.8 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 ABA80763.1 - 0.04 13.2 0.1 3.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Thi4 family Sdh_cyt PF01127.22 ABA80764.1 - 4.8e-14 52.4 6.4 5.6e-14 52.2 6.4 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_C PF02300.17 ABA80764.1 - 0.0051 16.9 0.7 0.0062 16.6 0.7 1.2 1 0 0 1 1 1 1 Fumarate reductase subunit C VirB3 PF05101.13 ABA80764.1 - 0.015 15.5 0.1 0.015 15.5 0.1 2.1 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein Sdh_cyt PF01127.22 ABA80765.1 - 1.2e-09 38.3 7.1 1.5e-09 38.0 7.1 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fer2_3 PF13085.6 ABA80766.1 - 3.6e-30 104.2 0.0 6.6e-30 103.3 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 ABA80766.1 - 7.1e-06 26.5 4.8 7.1e-06 26.5 4.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80766.1 - 3e-05 24.4 5.8 3e-05 24.4 5.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA80766.1 - 5e-05 23.4 6.2 5e-05 23.4 6.2 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA80766.1 - 0.0004 20.4 6.4 0.0004 20.4 6.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 ABA80766.1 - 0.012 15.5 0.1 0.012 15.5 0.1 2.8 2 1 1 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.7 ABA80766.1 - 0.022 15.3 8.2 0.022 15.3 8.2 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain MLVIN_C PF18697.1 ABA80766.1 - 0.049 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Murine leukemia virus (MLV) integrase (IN) C-terminal domain Methyltransf_22 PF13383.6 ABA80766.1 - 0.16 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NMT1_2 PF13379.6 ABA80767.1 - 2.7e-18 66.6 0.9 3.7e-18 66.2 0.9 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 ABA80767.1 - 1.5e-05 25.1 0.1 5.6e-05 23.2 0.1 1.8 1 1 1 2 2 2 1 NMT1/THI5 like DUF815 PF05673.13 ABA80767.1 - 0.049 12.8 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NMT1_2 PF13379.6 ABA80768.1 - 9.7e-17 61.5 0.9 9.7e-17 61.5 0.9 1.4 2 0 0 2 2 2 1 NMT1-like family NMT1 PF09084.11 ABA80768.1 - 1.2e-10 41.8 0.0 1.7e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Lipoprotein_9 PF03180.14 ABA80768.1 - 4.2e-05 22.8 0.0 7.8e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 NLPA lipoprotein BPD_transp_1 PF00528.22 ABA80769.1 - 2.8e-14 53.3 20.9 2.8e-14 53.3 20.9 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA80770.2 - 1.4e-28 100.2 0.0 2.6e-28 99.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 ABA80770.2 - 4.3e-05 24.0 0.8 0.00095 19.6 0.8 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 ABA80770.2 - 0.0013 18.7 0.0 0.56 10.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80770.2 - 0.0026 17.2 0.0 0.36 10.2 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80770.2 - 0.0039 16.9 0.0 0.0089 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 ABA80770.2 - 0.023 14.9 1.1 0.59 10.4 0.1 2.6 3 1 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 ABA80770.2 - 0.026 14.3 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 ABA80770.2 - 0.029 14.3 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 ABA80770.2 - 0.072 13.0 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_16 PF13191.6 ABA80770.2 - 0.098 13.0 0.1 0.14 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 ABA80770.2 - 0.11 12.5 0.1 0.39 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 ABA80770.2 - 0.12 11.7 0.0 0.47 9.8 0.0 1.9 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 ABA80770.2 - 0.13 11.0 0.2 0.32 9.7 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 ABA80770.2 - 0.13 12.8 0.0 0.38 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA80770.2 - 0.22 11.6 0.6 1.1 9.5 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA80770.2 - 0.34 11.2 1.3 2.4 8.5 1.3 2.2 1 1 0 1 1 1 0 AAA domain TPP_enzyme_N PF02776.18 ABA80771.1 - 2.7e-52 176.8 2.0 6.1e-52 175.7 1.1 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 ABA80771.1 - 6.8e-21 74.7 0.3 1.4e-20 73.7 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 ABA80771.1 - 0.00021 21.1 0.1 0.0019 17.9 0.1 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain AAA_33 PF13671.6 ABA80771.1 - 0.1 12.8 0.0 0.55 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain LysR_substrate PF03466.20 ABA80772.1 - 1e-31 109.9 5.8 1.7e-31 109.2 5.8 1.4 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80772.1 - 1.2e-19 69.9 0.3 2.8e-19 68.8 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA80772.1 - 0.044 13.6 0.0 0.088 12.6 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TauE PF01925.19 ABA80773.1 - 3.3e-27 95.6 34.4 4.1e-27 95.3 34.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE ThrE PF06738.12 ABA80773.1 - 0.0046 16.4 0.9 0.0046 16.4 0.9 2.8 1 1 2 3 3 3 2 Putative threonine/serine exporter Phage_holin_3_6 PF07332.11 ABA80773.1 - 0.021 14.9 7.6 0.021 14.9 7.6 4.0 1 1 4 5 5 5 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane_3 PF12698.7 ABA80774.1 - 1.3e-37 129.8 7.3 1.5e-37 129.5 7.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 ABA80774.1 - 4.3e-24 85.1 13.3 4.3e-24 85.1 13.3 2.3 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 ABA80774.1 - 3.5e-16 59.3 16.3 5.2e-16 58.8 16.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 ABA80774.1 - 1.5e-07 31.6 7.2 1.5e-07 31.6 7.2 2.6 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 ABA80774.1 - 0.28 10.7 17.4 0.074 12.6 7.9 3.2 2 1 2 4 4 4 0 ABC-2 family transporter protein ABC_tran PF00005.27 ABA80775.2 - 1.3e-58 197.3 0.0 3.4e-28 98.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter ABC2_membrane_3 PF12698.7 ABA80775.2 - 6e-40 137.4 1.3 7.5e-40 137.1 1.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_21 PF13304.6 ABA80775.2 - 8.1e-21 75.1 1.1 5e-06 26.5 0.0 4.2 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC2_membrane_2 PF12679.7 ABA80775.2 - 5.5e-18 65.2 9.5 7.7e-18 64.8 9.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 ABA80775.2 - 2.9e-14 53.0 20.5 8.8e-13 48.2 17.8 2.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 ABA80775.2 - 1.6e-06 28.2 5.8 3.3e-06 27.2 5.8 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_16 PF13191.6 ABA80775.2 - 3.4e-05 24.3 0.1 0.35 11.2 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 ABA80775.2 - 9.3e-05 22.4 0.0 0.31 10.9 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 ABA80775.2 - 0.00017 21.2 1.0 0.2 11.4 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA80775.2 - 0.001 18.8 0.0 0.26 11.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain BCA_ABC_TP_C PF12399.8 ABA80775.2 - 0.0039 17.1 0.4 0.59 10.1 0.1 2.6 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter SbcCD_C PF13558.6 ABA80775.2 - 0.0061 16.8 0.0 8.9 6.6 0.0 3.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 ABA80775.2 - 0.0077 16.5 1.6 7 6.9 0.1 3.2 3 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 ABA80775.2 - 0.0079 15.9 0.0 3.4 7.3 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_25 PF13481.6 ABA80775.2 - 0.0092 15.6 0.9 0.71 9.4 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.14 ABA80775.2 - 0.018 15.1 1.0 2.2 8.3 0.1 2.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 ABA80775.2 - 0.024 15.1 0.9 0.62 10.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 ABA80775.2 - 0.041 14.1 1.3 12 6.1 0.2 2.9 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 ABA80775.2 - 0.05 13.8 0.8 7.1 6.8 0.0 2.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 ABA80775.2 - 0.069 13.5 0.2 4.5 7.7 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Rad17 PF03215.15 ABA80775.2 - 0.099 12.6 0.0 5.8 6.8 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 ABA80775.2 - 0.11 12.6 0.7 15 5.7 0.1 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.22 ABA80775.2 - 0.48 10.0 2.0 6.3 6.4 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 ABA80775.2 - 0.72 10.3 3.3 12 6.3 0.1 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) HlyD_3 PF13437.6 ABA80776.1 - 8.9e-19 68.2 4.7 7.5e-14 52.3 0.1 2.8 2 1 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 ABA80776.1 - 1.7e-15 56.8 2.4 5.9e-14 51.8 2.4 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 ABA80776.1 - 2e-11 43.5 2.0 2e-11 43.5 2.0 2.8 3 0 0 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 ABA80776.1 - 4.2e-05 23.3 0.3 0.0068 16.2 0.1 2.6 2 0 0 2 2 2 2 Biotin-requiring enzyme Gluconate_2-dh3 PF13618.6 ABA80776.1 - 1 9.6 4.3 1.1 9.5 2.8 1.8 1 1 1 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 DUF2156 PF09924.9 ABA80777.1 - 5.7e-88 294.8 0.2 9.7e-88 294.0 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) Acetyltransf_6 PF13480.7 ABA80777.1 - 0.002 18.3 0.4 0.0061 16.7 0.4 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Cytochrome_C7 PF14522.6 ABA80778.1 - 0.026 14.5 0.9 0.082 12.9 0.9 1.8 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c Cytochrome_C554 PF13435.6 ABA80778.1 - 0.033 15.1 0.6 0.077 13.9 0.6 1.6 1 1 0 1 1 1 0 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.10 ABA80778.1 - 0.037 13.8 1.1 7.9 6.3 0.2 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) CytoC_RC PF02276.18 ABA80778.1 - 0.27 10.6 2.0 0.36 10.2 0.1 1.8 2 0 0 2 2 2 0 Photosynthetic reaction centre cytochrome C subunit Cytochrom_C PF00034.21 ABA80778.1 - 0.52 11.5 8.5 4.2 8.6 0.3 2.4 1 1 1 2 2 2 0 Cytochrome c Cytochrome_CBB3 PF13442.6 ABA80778.1 - 0.55 10.6 7.0 0.85 10.0 0.7 2.9 1 1 2 3 3 3 0 Cytochrome C oxidase, cbb3-type, subunit III DUF3365 PF11845.8 ABA80778.1 - 0.84 9.9 3.3 15 5.9 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3365) MCR PF18509.1 ABA80778.1 - 1 9.0 7.4 6.6 6.4 2.8 2.6 2 0 0 2 2 2 0 Magnetochrome domain TraW_N PF12477.8 ABA80778.1 - 1.9 8.5 9.7 1.8 8.6 4.7 2.3 2 0 0 2 2 2 0 Sex factor F TraW protein N terminal Ald_Xan_dh_C2 PF02738.18 ABA80779.1 - 2.3e-56 191.4 2.5 4.6e-28 98.0 0.0 3.1 2 1 1 3 3 3 3 Molybdopterin-binding domain of aldehyde dehydrogenase Fer2_2 PF01799.20 ABA80780.1 - 5.2e-26 90.5 0.3 5.2e-26 90.5 0.3 2.1 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 ABA80780.1 - 3.7e-08 33.2 0.1 3.7e-08 33.2 0.1 2.0 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 ABA80780.1 - 6.3e-05 22.9 0.2 0.00012 22.0 0.2 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 ABA80780.1 - 0.081 13.0 3.3 0.3 11.2 2.1 2.4 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain GntR PF00392.21 ABA80781.1 - 2.7e-19 68.6 0.2 1.8e-18 65.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 ABA80781.1 - 9.2e-19 68.1 9.7 1.2e-18 67.7 7.1 2.0 2 0 0 2 2 2 1 FCD domain TrmB PF01978.19 ABA80781.1 - 0.0056 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 ABA80781.1 - 0.019 15.2 0.0 0.034 14.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DnaJ PF00226.31 ABA80781.1 - 0.1 12.8 0.0 0.58 10.3 0.0 2.1 2 0 0 2 2 2 0 DnaJ domain HTH_24 PF13412.6 ABA80781.1 - 0.2 11.2 0.1 0.2 11.2 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding BPD_transp_1 PF00528.22 ABA80782.1 - 5.1e-25 88.3 11.8 5.1e-25 88.3 11.8 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA80783.1 - 2e-30 106.1 0.0 2.7e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80783.1 - 2.4e-06 27.6 0.1 0.061 13.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA80783.1 - 0.00068 20.1 0.0 0.0013 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA80783.1 - 0.0021 17.8 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA80783.1 - 0.0049 16.8 0.0 0.008 16.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 ABA80783.1 - 0.0054 15.6 0.6 0.31 9.8 0.1 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_25 PF13481.6 ABA80783.1 - 0.016 14.8 0.1 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA80783.1 - 0.03 14.2 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 ABA80783.1 - 0.037 13.4 0.0 0.083 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 ABA80783.1 - 0.058 13.7 0.3 0.3 11.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 ABA80783.1 - 0.1 11.8 0.2 0.29 10.3 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 ABA80783.1 - 0.12 12.3 0.2 0.93 9.4 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.6 ABA80783.1 - 0.16 11.7 0.0 0.23 11.1 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 ABA80783.1 - 0.16 11.2 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.19 ABA80783.1 - 0.17 11.3 0.0 2 7.8 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NMT1 PF09084.11 ABA80784.1 - 7.6e-23 81.6 0.0 1.3e-22 80.8 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 ABA80784.1 - 3.5e-08 33.4 0.2 5.4e-08 32.7 0.2 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 ABA80784.1 - 0.00014 21.4 0.0 0.0005 19.6 0.0 1.9 1 1 0 1 1 1 1 NMT1-like family FAA_hydrolase PF01557.18 ABA80785.1 - 1.3e-48 165.6 0.0 1.5e-48 165.4 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Cupin_2 PF07883.11 ABA80785.1 - 0.087 12.6 0.0 4.8 7.0 0.0 2.5 2 0 0 2 2 2 0 Cupin domain RraA-like PF03737.15 ABA80786.1 - 7e-36 123.6 0.1 8.6e-36 123.4 0.1 1.1 1 0 0 1 1 1 1 Aldolase/RraA NAD_binding_2 PF03446.15 ABA80787.1 - 2e-29 102.8 0.5 2.9e-29 102.3 0.5 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 ABA80787.1 - 2.4e-16 60.1 0.5 2.4e-16 60.1 0.5 2.1 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 ABA80787.1 - 4.2e-08 33.7 0.7 9.5e-08 32.5 0.7 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 ABA80787.1 - 4.4e-08 32.7 0.0 6.7e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 ABA80787.1 - 9.1e-05 22.1 0.1 0.00015 21.4 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Rossmann-like PF10727.9 ABA80787.1 - 0.00085 19.2 3.1 0.002 18.0 3.1 1.6 1 0 0 1 1 1 1 Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 ABA80787.1 - 0.00097 19.1 0.1 0.0024 17.9 0.1 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 ABA80787.1 - 0.0051 17.1 0.4 0.01 16.1 0.4 1.5 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 ABA80787.1 - 0.0087 15.7 0.1 0.016 14.9 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA LpxI_N PF17930.1 ABA80787.1 - 0.011 15.7 0.4 0.023 14.6 0.4 1.5 1 0 0 1 1 1 0 LpxI N-terminal domain Shikimate_DH PF01488.20 ABA80787.1 - 0.011 15.8 0.2 0.027 14.5 0.1 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 ABA80787.1 - 0.035 14.0 1.2 0.061 13.2 1.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TauE PF01925.19 ABA80788.1 - 2.2e-46 158.4 35.3 2.7e-46 158.1 35.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Myco_arth_vir_N PF09610.10 ABA80788.1 - 1.9 8.6 4.6 14 5.9 4.6 2.6 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) Transp_cyt_pur PF02133.15 ABA80789.1 - 1.5e-55 188.7 38.8 1.9e-55 188.4 38.8 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Glyoxalase_6 PF18029.1 ABA80790.1 - 1.1e-06 29.3 0.0 1.9e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 ABA80790.1 - 2e-06 28.0 0.0 3.6e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily adh_short_C2 PF13561.6 ABA80791.1 - 1e-79 267.4 0.6 1.1e-79 267.2 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA80791.1 - 5.4e-17 61.9 0.0 7.3e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase ketoacyl-synt PF00109.26 ABA80792.1 - 1.1e-41 143.2 0.9 1.6e-41 142.6 0.9 1.3 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 ABA80792.1 - 1.8e-28 98.9 0.2 7.7e-28 96.9 0.1 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 ABA80792.1 - 0.00042 19.8 0.5 0.0021 17.5 0.4 1.9 1 1 1 2 2 2 1 Thiolase, N-terminal domain KAsynt_C_assoc PF16197.5 ABA80792.1 - 0.066 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Ketoacyl-synthetase C-terminal extension FabA PF07977.13 ABA80793.1 - 2.6e-45 153.4 0.0 3.1e-45 153.2 0.0 1.1 1 0 0 1 1 1 1 FabA-like domain FUR PF01475.19 ABA80794.1 - 3.3e-15 56.3 0.0 4e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Tnp_Tc3_2 PF01498.18 ABA80794.1 - 0.047 13.9 0.0 0.087 13.1 0.0 1.4 1 0 0 1 1 1 0 Transposase Transglut_core PF01841.19 ABA80795.1 - 1.3e-20 73.9 0.1 1.8e-20 73.5 0.1 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 ABA80795.1 - 0.099 12.2 0.0 0.55 9.8 0.0 1.7 1 1 1 2 2 2 0 Transglutaminase-like domain CoA_transf_3 PF02515.17 ABA80796.1 - 8.9e-78 262.0 0.1 1.1e-77 261.7 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III Acyl-CoA_dh_1 PF00441.24 ABA80797.1 - 2.6e-51 173.8 5.8 2.6e-51 173.8 5.8 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 ABA80797.1 - 1.5e-29 102.9 5.7 1.5e-29 102.9 5.7 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 ABA80797.1 - 7.5e-28 97.5 0.9 2.1e-27 96.0 0.9 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 ABA80797.1 - 1.4e-24 86.1 0.0 3.1e-24 85.0 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HTH_1 PF00126.27 ABA80797.1 - 0.014 15.3 1.0 0.041 13.8 1.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family adh_short PF00106.25 ABA80798.1 - 1.6e-41 142.0 2.3 1.8e-41 141.7 2.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA80798.1 - 4.5e-41 140.9 3.6 5.7e-41 140.6 3.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA80798.1 - 8.1e-07 29.1 3.8 5e-06 26.5 3.7 2.1 1 1 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 ABA80798.1 - 0.079 13.2 0.7 0.12 12.6 0.7 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Thiolase_N PF00108.23 ABA80799.1 - 3.9e-78 262.4 3.4 5.4e-78 261.9 3.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 ABA80799.1 - 2.7e-44 149.7 1.7 5e-44 148.9 0.6 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 ABA80799.1 - 0.062 13.5 0.0 0.21 11.8 0.0 1.9 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 ABA80799.1 - 5.3 7.0 8.0 3.6 7.5 0.1 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 ABA80799.1 - 9.9 5.6 17.9 0.042 13.4 2.9 3.4 3 1 1 4 4 4 0 Beta-ketoacyl synthase, N-terminal domain GATase_3 PF07685.14 ABA80800.1 - 1.3e-30 106.4 0.0 1.8e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 ABA80800.1 - 2.2e-14 53.6 0.0 3.4e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 ABA80800.1 - 6.2e-12 45.8 0.0 1.2e-05 25.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiM PF01891.16 ABA80801.1 - 6.4e-14 52.3 17.6 8e-14 52.0 17.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region YiaAB PF05360.14 ABA80801.1 - 0.012 15.9 0.8 0.012 15.9 0.8 2.7 2 1 0 3 3 3 0 yiaA/B two helix domain Acyl_transf_1 PF00698.21 ABA80802.1 - 0.067 12.7 0.5 0.07 12.6 0.5 1.1 1 0 0 1 1 1 0 Acyl transferase domain MdoG PF04349.12 ABA80803.1 - 1.5e-178 594.6 0.0 1.8e-178 594.4 0.0 1.0 1 0 0 1 1 1 1 Periplasmic glucan biosynthesis protein, MdoG ApbE PF02424.15 ABA80804.2 - 9.4e-64 215.4 0.0 1.2e-63 215.1 0.0 1.1 1 0 0 1 1 1 1 ApbE family Fer4 PF00037.27 ABA80805.1 - 8.4e-08 31.7 3.4 8.4e-08 31.7 3.4 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 ABA80805.1 - 3.8e-07 30.6 25.7 0.00039 20.9 13.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA80805.1 - 7.2e-07 29.0 2.8 7.2e-07 29.0 2.8 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 ABA80805.1 - 7.3e-07 29.3 9.3 9.5e-07 28.9 9.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA80805.1 - 2.6e-06 27.2 11.5 0.0013 18.7 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 ABA80805.1 - 8.9e-05 22.5 12.3 0.00029 20.9 12.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 ABA80805.1 - 0.00082 20.1 17.0 0.091 13.7 6.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 ABA80805.1 - 0.00095 19.7 1.6 0.00095 19.7 1.6 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA80805.1 - 0.0037 17.6 13.8 0.017 15.6 2.4 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 ABA80805.1 - 0.007 16.8 2.4 0.007 16.8 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA80805.1 - 0.015 16.2 13.9 0.044 14.7 8.9 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 ABA80805.1 - 0.018 15.2 4.1 0.018 15.2 4.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 ABA80805.1 - 0.059 13.6 7.3 0.099 12.8 7.3 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer2 PF00111.27 ABA80806.1 - 3e-14 52.7 0.5 3.4e-14 52.6 0.5 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Flavodoxin_1 PF00258.25 ABA80807.2 - 7.3e-10 39.2 0.0 1.3e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 ABA80807.2 - 1.2e-08 35.2 0.7 2.8e-08 34.0 0.7 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 ABA80807.2 - 0.00063 19.3 0.4 0.0011 18.5 0.4 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain UPF0728 PF15092.6 ABA80807.2 - 0.034 14.0 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0728 Flavodoxin_5 PF12724.7 ABA80807.2 - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Rnf-Nqr PF02508.14 ABA80808.1 - 3.2e-58 196.6 17.5 3.5e-58 196.4 17.5 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Adeno_E3B PF03376.14 ABA80808.1 - 0.1 12.8 0.8 0.37 11.1 0.1 2.2 2 0 0 2 2 2 0 Adenovirus E3B protein DUF1129 PF06570.11 ABA80808.1 - 9.6 5.6 8.1 15 5.0 7.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Fer4 PF00037.27 ABA80809.1 - 3.6e-14 51.9 22.7 7.3e-08 31.9 5.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain FeS PF04060.13 ABA80809.1 - 2.1e-13 49.7 6.9 2.1e-13 49.7 6.9 2.3 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4_9 PF13187.6 ABA80809.1 - 5.3e-12 45.7 40.5 3.7e-08 33.4 13.5 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 ABA80809.1 - 9.5e-12 44.9 12.2 9.5e-12 44.9 12.2 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 ABA80809.1 - 1.1e-09 38.3 24.8 1.6e-07 31.3 13.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA80809.1 - 5.1e-08 32.7 15.0 3.3e-05 23.7 5.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 ABA80809.1 - 6.3e-08 33.1 17.0 4.2e-05 24.0 0.5 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA80809.1 - 6.9e-08 33.3 9.1 2.4e-05 25.2 0.9 2.8 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 ABA80809.1 - 1.1e-05 25.3 24.3 0.00016 21.6 4.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 ABA80809.1 - 0.00014 22.0 4.2 0.00027 21.1 4.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 ABA80809.1 - 0.00014 22.5 26.7 0.0055 17.6 4.6 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 ABA80809.1 - 0.0014 19.0 17.1 0.0091 16.4 0.2 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA80809.1 - 0.0065 16.9 2.3 0.0065 16.9 2.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 ABA80809.1 - 0.0091 16.5 0.7 0.0091 16.5 0.7 2.9 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 ABA80809.1 - 0.15 12.9 16.6 0.18 12.7 0.6 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 ABA80809.1 - 0.55 11.0 15.8 2.1 9.1 4.5 3.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 ABA80809.1 - 0.85 10.2 19.2 0.37 11.4 4.5 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_51K PF01512.17 ABA80810.1 - 7.2e-48 162.3 0.2 2.3e-47 160.7 0.2 1.8 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 ABA80810.1 - 1.3e-33 114.9 0.1 5.5e-33 112.9 0.1 2.1 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 ABA80810.1 - 1e-15 57.3 0.6 2.6e-15 56.0 0.6 1.8 1 0 0 1 1 1 1 SLBB domain Fer4_10 PF13237.6 ABA80810.1 - 3.8e-08 33.3 9.3 8.2e-08 32.2 9.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 ABA80810.1 - 5.3e-07 30.1 7.4 1.6e-06 28.6 7.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA80810.1 - 2.2e-06 28.0 24.0 2.5e-05 24.6 11.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 ABA80810.1 - 2e-05 24.2 16.6 9.6e-05 22.0 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 ABA80810.1 - 4.4e-05 23.6 8.7 0.00012 22.1 8.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 ABA80810.1 - 0.0011 19.5 11.4 0.0011 19.5 11.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA80810.1 - 0.0012 19.7 14.1 0.0095 16.9 0.8 2.7 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 ABA80810.1 - 0.0046 17.8 11.8 0.2 12.6 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 ABA80810.1 - 0.0046 17.0 18.8 0.0081 16.2 4.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 ABA80810.1 - 0.0048 17.0 12.3 0.13 12.4 13.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA80810.1 - 0.013 15.6 2.8 0.013 15.6 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NQRA PF05896.11 ABA80810.1 - 0.11 11.9 0.0 0.32 10.4 0.0 1.7 1 1 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_4 PF12800.7 ABA80810.1 - 1.1 9.9 15.8 0.43 11.2 4.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 ABA80810.1 - 3.2 8.9 21.9 0.17 12.9 5.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Borrelia_P83 PF05262.11 ABA80810.1 - 4.3 5.7 5.8 6.8 5.1 5.8 1.2 1 0 0 1 1 1 0 Borrelia P83/100 protein NQR2_RnfD_RnfE PF03116.15 ABA80811.1 - 8.4e-103 343.8 22.7 9.4e-103 343.6 22.7 1.0 1 0 0 1 1 1 1 NQR2, RnfD, RnfE family FMN_bind PF04205.14 ABA80812.1 - 4.2e-17 62.5 0.4 1.2e-16 61.0 0.1 1.8 2 0 0 2 2 2 1 FMN-binding domain Virul_fac_BrkB PF03631.15 ABA80812.1 - 0.77 9.3 5.3 1.8 8.1 0.3 2.1 1 1 1 2 2 2 0 Virulence factor BrkB Rnf-Nqr PF02508.14 ABA80813.1 - 4.7e-60 202.5 12.0 5.9e-60 202.2 12.0 1.1 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein MtrF PF09472.10 ABA80813.1 - 0.59 9.6 8.1 0.34 10.3 0.9 3.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Ub-RnfH PF03658.14 ABA80814.1 - 1.9e-29 101.8 0.0 2.1e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 RnfH family Ubiquitin ThiS PF02597.20 ABA80814.1 - 0.035 14.7 0.0 0.049 14.3 0.0 1.3 1 0 0 1 1 1 0 ThiS family TGS PF02824.21 ABA80814.1 - 0.14 12.2 0.0 0.57 10.3 0.0 1.8 2 0 0 2 2 2 0 TGS domain Pyr_redox_2 PF07992.14 ABA80815.1 - 7e-11 41.9 0.2 1.5e-10 40.8 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA80815.1 - 0.001 19.5 0.0 0.0023 18.4 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 ABA80815.1 - 0.0026 17.2 0.5 0.0026 17.2 0.5 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 ABA80815.1 - 0.0033 16.4 0.0 0.006 15.5 0.0 1.4 1 0 0 1 1 1 1 Tryptophan halogenase GIDA PF01134.22 ABA80815.1 - 0.0034 16.5 0.0 0.005 16.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 ABA80815.1 - 0.011 15.1 0.1 0.018 14.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 ABA80815.1 - 0.016 14.3 0.1 0.042 12.9 0.1 1.7 1 0 0 1 1 1 0 Lycopene cyclase protein HI0933_like PF03486.14 ABA80815.1 - 0.016 13.9 0.0 0.023 13.4 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_9 PF13454.6 ABA80815.1 - 0.027 14.5 0.1 1.2 9.1 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 ABA80815.1 - 0.031 14.5 0.0 0.031 14.5 0.0 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 ABA80815.1 - 0.044 14.0 0.0 0.088 13.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.6 ABA80815.1 - 0.045 13.0 0.0 0.063 12.5 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 ABA80815.1 - 0.13 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) HSP70 PF00012.20 ABA80816.1 - 8.6e-18 63.8 0.0 3.7e-09 35.3 0.0 3.1 2 1 1 3 3 3 3 Hsp70 protein MreB_Mbl PF06723.13 ABA80816.1 - 4.3e-06 25.8 0.2 0.00013 20.9 0.0 2.7 3 0 0 3 3 3 1 MreB/Mbl protein FtsA PF14450.6 ABA80816.1 - 0.0031 17.9 0.4 1.6 9.2 0.1 3.1 3 0 0 3 3 3 2 Cell division protein FtsA DDR PF08841.10 ABA80816.1 - 0.017 14.2 0.7 2.5 7.0 0.1 3.0 3 0 0 3 3 3 0 Diol dehydratase reactivase ATPase-like domain Aldo_ket_red PF00248.21 ABA80817.1 - 1.1e-78 264.5 0.0 1.2e-78 264.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GP46 PF07409.12 ABA80817.1 - 0.036 13.8 2.5 0.051 13.3 0.4 2.1 2 0 0 2 2 2 0 Phage protein GP46 DUF4509 PF14970.6 ABA80817.1 - 0.047 13.6 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4509) AraC_N PF06719.13 ABA80818.1 - 4.4e-46 156.2 0.0 5.9e-46 155.8 0.0 1.2 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus HTH_18 PF12833.7 ABA80818.1 - 1.3e-21 76.6 0.3 3e-21 75.5 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA80818.1 - 1.3e-14 53.9 0.0 1.3e-08 34.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 ABA80818.1 - 0.061 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 AraC-like ligand binding domain HTH_18 PF12833.7 ABA80819.1 - 8.4e-23 80.4 0.3 1.8e-22 79.4 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA80819.1 - 2.2e-18 65.9 0.0 4.4e-08 33.0 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DJ-1_PfpI PF01965.24 ABA80819.1 - 8.5e-11 41.9 0.0 1.1e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_31 PF13560.6 ABA80819.1 - 0.04 14.3 0.1 2.3 8.6 0.2 2.6 1 1 1 2 2 2 0 Helix-turn-helix domain SgrR_N PF12793.7 ABA80819.1 - 0.15 12.3 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term Fer2_2 PF01799.20 ABA80820.1 - 7.8e-29 99.5 0.3 7.8e-29 99.5 0.3 2.1 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 ABA80820.1 - 5e-10 39.2 2.7 5e-10 39.2 2.7 2.2 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 ABA80820.1 - 7.5e-05 22.7 1.5 0.00017 21.6 1.5 1.7 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 ABA80820.1 - 0.003 17.6 2.5 0.013 15.6 2.5 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 ABA80821.1 - 2.2e-49 167.5 0.0 3.4e-49 166.9 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 ABA80821.1 - 3.2e-16 59.4 0.8 5.1e-16 58.7 0.1 1.8 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 ABA80822.1 - 6.1e-121 404.6 1.5 7.8e-121 404.2 1.5 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 ABA80822.1 - 1.2e-16 61.0 0.0 3.6e-16 59.5 0.0 1.8 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Sigma70_r3 PF04539.16 ABA80822.1 - 0.0044 17.1 0.4 2.4 8.3 0.1 3.2 3 0 0 3 3 3 2 Sigma-70 region 3 DUF4198 PF10670.9 ABA80823.1 - 4.5e-45 154.6 1.5 5.3e-45 154.4 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CbiM PF01891.16 ABA80824.1 - 1.1e-44 152.8 24.7 1.2e-44 152.6 24.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region bMG3 PF11974.8 ABA80825.1 - 0.066 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain CbiQ PF02361.16 ABA80826.1 - 1.4e-25 90.2 7.7 1.8e-25 89.8 7.7 1.0 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 ABA80827.1 - 2.4e-30 105.9 0.0 3e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80827.1 - 1.3e-10 41.6 0.0 0.00024 21.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80827.1 - 3.3e-05 23.4 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF3584 PF12128.8 ABA80827.1 - 0.0039 14.8 0.2 0.0051 14.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_29 PF13555.6 ABA80827.1 - 0.0042 16.8 0.0 0.0076 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 ABA80827.1 - 0.0055 16.1 0.0 0.008 15.5 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.6 ABA80827.1 - 0.007 16.8 0.7 0.014 15.8 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 ABA80827.1 - 0.011 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 ABA80827.1 - 0.012 15.8 0.0 0.35 11.1 0.0 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 ABA80827.1 - 0.014 15.7 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 ABA80827.1 - 0.017 14.0 0.0 0.023 13.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_23 PF13476.6 ABA80827.1 - 0.019 15.5 0.1 0.029 14.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 ABA80827.1 - 0.032 13.8 0.0 0.1 12.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 ABA80827.1 - 0.083 12.6 0.2 0.17 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 ABA80827.1 - 0.086 11.5 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA80827.1 - 0.11 12.8 0.2 0.17 12.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 ABA80827.1 - 0.12 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 ABA80827.1 - 0.14 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.9 ABA80827.1 - 0.2 10.5 0.0 0.27 10.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1 PF01926.23 ABA80827.1 - 0.21 11.7 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase Pox_A32 PF04665.12 ABA80827.1 - 0.22 10.9 0.1 0.34 10.3 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein G-alpha PF00503.20 ABA80827.1 - 0.29 10.3 0.0 0.37 9.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Cyt_bd_oxida_II PF02322.15 ABA80828.1 - 3.3e-98 328.8 35.1 3.8e-98 328.6 35.1 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF4538 PF15061.6 ABA80828.1 - 0.42 10.4 2.5 0.75 9.6 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Cyt_bd_oxida_I PF01654.17 ABA80829.1 - 1.5e-161 537.7 24.3 1.7e-161 537.5 24.3 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Legionella_OMP PF05150.12 ABA80829.1 - 0.14 11.1 1.2 5.2 5.9 0.2 2.1 1 1 1 2 2 2 0 Legionella pneumophila major outer membrane protein precursor NPV_P10 PF05531.12 ABA80830.1 - 0.088 13.3 0.5 2.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein HTH_psq PF05225.16 ABA80830.1 - 0.12 12.1 0.2 0.28 11.0 0.2 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain PRCC PF10253.9 ABA80830.1 - 0.77 10.5 4.8 1.2 9.9 4.8 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting ABC_tran_CTD PF16326.5 ABA80830.1 - 5.4 7.3 6.9 7.5 6.9 0.4 3.0 2 1 1 3 3 3 0 ABC transporter C-terminal domain AAA_27 PF13514.6 ABA80831.1 - 8.5e-70 234.6 0.0 8.5e-70 234.6 0.0 3.3 4 0 0 4 4 4 1 AAA domain AAA_23 PF13476.6 ABA80831.1 - 5.5e-05 23.7 0.0 0.0023 18.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 ABA80831.1 - 0.00071 19.1 0.0 0.041 13.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80831.1 - 0.017 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain CR6_interact PF10147.9 ABA80831.1 - 0.13 12.0 0.0 0.13 12.0 0.0 3.3 4 0 0 4 4 4 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Metallophos PF00149.28 ABA80832.1 - 4.2e-12 47.0 0.0 5.8e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 ABA80832.1 - 2.1e-07 31.3 0.0 7.4e-07 29.5 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Nitroreductase PF00881.24 ABA80833.1 - 1.6e-29 103.1 0.0 2.2e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 ABA80833.1 - 0.0055 16.3 0.0 2.5 7.6 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase Metal_resist PF13801.6 ABA80833.1 - 1.6 8.9 8.4 0.31 11.3 1.8 2.2 2 0 0 2 2 2 0 Heavy-metal resistance FecCD PF01032.18 ABA80836.1 - 9.9e-62 208.7 39.0 1.2e-61 208.5 39.0 1.0 1 0 0 1 1 1 1 FecCD transport family FecCD PF01032.18 ABA80837.1 - 2.8e-49 167.8 38.1 3.4e-49 167.6 38.1 1.1 1 0 0 1 1 1 1 FecCD transport family TctB PF07331.11 ABA80837.1 - 7.2 6.9 41.8 0.057 13.7 18.0 3.2 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family ABC_tran PF00005.27 ABA80838.1 - 3.5e-27 95.6 0.0 4.5e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80838.1 - 8.5e-11 42.2 0.1 6.1e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80838.1 - 2e-05 24.2 0.0 0.07 12.6 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 ABA80838.1 - 0.00017 21.3 2.6 0.00073 19.2 0.8 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 ABA80838.1 - 0.00021 21.0 0.1 0.00039 20.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA80838.1 - 0.00099 19.7 0.1 0.0016 18.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA80838.1 - 0.0014 19.1 1.5 0.0051 17.2 1.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 ABA80838.1 - 0.004 16.9 0.0 0.0057 16.4 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 ABA80838.1 - 0.0063 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 ABA80838.1 - 0.0084 16.4 0.1 0.11 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 ABA80838.1 - 0.013 14.4 0.6 1.8 7.2 0.2 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 ABA80838.1 - 0.019 14.7 0.3 0.032 13.9 0.3 1.6 1 1 0 1 1 1 0 AAA domain STAS_2 PF13466.6 ABA80838.1 - 0.042 14.2 7.4 0.078 13.3 0.2 3.1 3 0 0 3 3 3 0 STAS domain AAA_27 PF13514.6 ABA80838.1 - 0.082 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA80838.1 - 0.094 12.9 0.2 0.32 11.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain ZnuA PF01297.17 ABA80838.1 - 0.16 11.4 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic HisKA_2 PF07568.12 ABA80839.2 - 1.9e-10 40.7 0.0 5e-10 39.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase HWE_HK PF07536.14 ABA80839.2 - 8.5e-09 36.0 0.5 2.9e-08 34.3 0.1 2.2 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c PF02518.26 ABA80839.2 - 3.4e-06 27.5 0.0 3.3e-05 24.3 0.0 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA80839.2 - 7.1e-06 26.0 0.0 1.5e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Phi-29_GP16_7 PF06720.11 ABA80839.2 - 0.11 12.4 0.5 2.3 8.1 0.1 2.2 2 0 0 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 DUF4381 PF14316.6 ABA80839.2 - 0.21 11.8 6.6 3.2 8.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) SIR2 PF02146.17 ABA80840.1 - 5e-45 153.6 0.0 6e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family DZR PF12773.7 ABA80840.1 - 0.0014 18.6 0.5 0.0025 17.8 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 ABA80840.1 - 0.0039 17.3 1.8 0.0071 16.4 1.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 ABA80840.1 - 0.021 14.9 0.1 0.032 14.3 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PNTB PF02233.16 ABA80840.1 - 0.046 12.6 0.0 0.064 12.2 0.0 1.1 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit zf-ribbon_3 PF13248.6 ABA80840.1 - 0.12 11.9 1.9 1.5 8.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 ABA80840.1 - 0.14 12.0 2.1 5.3 7.0 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 ABA80840.1 - 0.16 12.0 0.2 0.27 11.3 0.2 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF4379 PF14311.6 ABA80840.1 - 0.47 10.8 3.3 0.82 10.1 3.3 1.3 1 0 0 1 1 1 0 Probable Zinc-ribbon domain UPF0547 PF10571.9 ABA80840.1 - 2.1 8.5 5.1 2.2 8.4 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Radical_SAM PF04055.21 ABA80841.1 - 4e-09 37.1 0.0 5.6e-08 33.3 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily LAM_C PF12544.8 ABA80841.1 - 2.5e-06 27.7 0.0 4.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Fer4_14 PF13394.6 ABA80841.1 - 0.00097 19.3 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 ABA80841.1 - 0.0013 19.0 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cupin_2 PF07883.11 ABA80842.1 - 1.4e-14 53.5 0.2 2e-14 53.0 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 ABA80842.1 - 1.2e-08 34.7 0.0 1.5e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Cupin Auxin_BP PF02041.16 ABA80842.1 - 0.0067 16.1 0.0 0.0077 15.9 0.0 1.1 1 0 0 1 1 1 1 Auxin binding protein Cupin_3 PF05899.12 ABA80842.1 - 0.0068 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) 3-HAO PF06052.12 ABA80842.1 - 0.017 14.7 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Cupin_7 PF12973.7 ABA80842.1 - 0.027 14.4 0.1 0.038 13.9 0.1 1.3 1 1 0 1 1 1 0 ChrR Cupin-like domain SLT_2 PF13406.6 ABA80843.2 - 9.8e-106 353.2 0.0 1.2e-105 353.0 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain PG_binding_1 PF01471.18 ABA80843.2 - 7.7e-13 48.5 0.1 3.8e-12 46.2 0.1 2.3 2 0 0 2 2 2 1 Putative peptidoglycan binding domain PG_binding_2 PF08823.11 ABA80843.2 - 0.031 14.6 0.0 0.22 11.9 0.0 2.3 2 0 0 2 2 2 0 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA80843.2 - 0.05 13.9 0.4 0.27 11.5 0.1 2.2 2 0 0 2 2 2 0 Predicted Peptidoglycan domain FANCF PF11107.8 ABA80843.2 - 0.25 10.5 0.0 0.38 9.9 0.0 1.1 1 0 0 1 1 1 0 Fanconi anemia group F protein (FANCF) Hva1_TUDOR PF11160.8 ABA80844.1 - 4.7e-21 74.7 2.7 5.3e-21 74.6 2.7 1.0 1 0 0 1 1 1 1 Hypervirulence associated proteins TUDOR domain SBP_bac_5 PF00496.22 ABA80845.1 - 5.4e-97 325.1 3.1 6.7e-97 324.8 3.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 ABA80846.1 - 9.8e-47 159.1 15.4 9.8e-47 159.1 15.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA80847.1 - 3.5e-33 114.9 15.5 5.3e-33 114.3 13.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA80847.1 - 1.7e-13 50.3 0.8 1.7e-13 50.3 0.8 4.3 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF4148 PF13663.6 ABA80847.1 - 0.13 12.4 2.2 2.8 8.2 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) ABC_tran PF00005.27 ABA80848.1 - 1.4e-24 87.2 0.0 1.9e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 ABA80848.1 - 3.6e-07 30.6 0.0 6.5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 ABA80848.1 - 7.8e-07 28.7 0.0 2.4e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA80848.1 - 7.4e-05 22.7 0.0 0.00075 19.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA80848.1 - 0.0017 18.6 0.1 0.015 15.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA80848.1 - 0.0039 16.9 0.1 0.0067 16.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 ABA80848.1 - 0.031 13.7 0.3 0.25 10.7 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 ABA80848.1 - 0.057 12.8 0.1 0.78 9.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ABC_ATPase PF09818.9 ABA80848.1 - 0.058 12.2 1.1 0.15 10.8 0.4 2.0 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DUF3987 PF13148.6 ABA80848.1 - 0.12 11.4 0.0 0.24 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ABC_tran PF00005.27 ABA80849.1 - 1.9e-31 109.4 0.0 2.5e-31 109.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80849.1 - 9.3e-08 32.2 0.6 0.00015 21.7 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA80849.1 - 3.2e-05 24.2 1.0 0.00051 20.3 1.0 2.1 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.12 ABA80849.1 - 4.9e-05 23.8 0.0 0.0001 22.8 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 ABA80849.1 - 0.00053 20.4 0.9 0.00091 19.6 0.9 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 ABA80849.1 - 0.00096 18.6 0.1 0.0066 15.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 ABA80849.1 - 0.0024 17.3 0.1 0.29 10.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial TniB protein AAA_25 PF13481.6 ABA80849.1 - 0.004 16.8 0.6 2.3 7.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 ABA80849.1 - 0.0055 16.5 0.1 0.11 12.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 ABA80849.1 - 0.0083 16.0 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 ABA80849.1 - 0.01 15.8 0.3 0.032 14.1 0.0 1.9 2 1 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 ABA80849.1 - 0.011 15.5 0.1 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.6 ABA80849.1 - 0.019 14.7 0.1 0.035 13.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 ABA80849.1 - 0.072 13.0 0.1 0.87 9.5 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 ABA80849.1 - 0.09 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 ABA80849.1 - 0.12 11.5 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 ABA80849.1 - 0.13 11.6 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 ABA80849.1 - 0.15 10.7 0.0 1.2 7.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 ABA80849.1 - 0.19 12.2 0.0 0.37 11.2 0.0 1.7 1 1 0 1 1 1 0 RNA helicase DUF87 PF01935.17 ABA80849.1 - 0.22 11.6 0.1 0.43 10.7 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_23 PF13476.6 ABA80849.1 - 0.23 11.9 0.0 0.35 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Glyoxalase PF00903.25 ABA80850.1 - 2.7e-12 47.0 0.0 3.2e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 ABA80850.1 - 7.7e-07 29.9 0.0 1.1e-06 29.3 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 ABA80850.1 - 1.2e-05 25.5 0.0 1.8e-05 25.0 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 ABA80850.1 - 0.0054 16.9 0.0 0.0084 16.2 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 ABA80850.1 - 0.023 14.6 0.0 0.095 12.6 0.0 1.8 1 1 0 1 1 1 0 Glyoxalase-like domain CENP-F_leu_zip PF10473.9 ABA80851.1 - 3e-06 27.3 12.4 0.0054 16.8 4.0 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6_N PF17675.1 ABA80851.1 - 5.5e-05 23.7 13.6 0.03 14.9 6.0 2.5 1 1 1 2 2 2 2 Apg6 coiled-coil region YabA PF06156.13 ABA80851.1 - 0.0002 22.0 1.3 0.014 16.0 0.2 2.3 1 1 1 2 2 2 1 Initiation control protein YabA PI3K_P85_iSH2 PF16454.5 ABA80851.1 - 0.00025 20.7 0.8 0.00096 18.8 0.4 2.0 1 1 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4201 PF13870.6 ABA80851.1 - 0.00035 20.4 3.1 0.42 10.3 0.0 2.9 2 1 1 3 3 3 2 Domain of unknown function (DUF4201) DUF4686 PF15742.5 ABA80851.1 - 0.00045 19.5 7.3 0.00062 19.0 7.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4686) TolA_bind_tri PF16331.5 ABA80851.1 - 0.00059 19.9 0.4 0.00059 19.9 0.4 3.1 2 1 1 3 3 3 1 TolA binding protein trimerisation Filament PF00038.21 ABA80851.1 - 0.0011 18.6 9.3 0.0018 17.9 4.7 2.2 1 1 1 2 2 2 1 Intermediate filament protein Baculo_PEP_C PF04513.12 ABA80851.1 - 0.0011 19.0 1.8 0.053 13.6 1.2 2.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 ABA80851.1 - 0.0015 17.9 3.6 0.0081 15.5 3.5 1.9 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding MAD PF05557.13 ABA80851.1 - 0.0016 16.9 7.2 0.0022 16.4 7.2 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein Spc7 PF08317.11 ABA80851.1 - 0.0017 17.3 11.1 0.0048 15.8 2.3 2.2 1 1 1 2 2 2 1 Spc7 kinetochore protein EzrA PF06160.12 ABA80851.1 - 0.002 16.4 2.1 0.15 10.2 0.1 2.1 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA Fez1 PF06818.15 ABA80851.1 - 0.0033 17.9 9.3 0.0068 16.9 9.3 1.5 1 0 0 1 1 1 1 Fez1 PspA_IM30 PF04012.12 ABA80851.1 - 0.0037 16.9 20.9 0.0037 16.9 20.9 2.8 1 1 1 2 2 2 2 PspA/IM30 family Myosin_tail_1 PF01576.19 ABA80851.1 - 0.0043 14.9 11.1 0.007 14.2 11.1 1.2 1 0 0 1 1 1 1 Myosin tail DHR10 PF18595.1 ABA80851.1 - 0.0044 17.1 1.6 0.0044 17.1 1.6 2.8 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain Snapin_Pallidin PF14712.6 ABA80851.1 - 0.0045 17.4 5.1 0.57 10.6 0.3 3.1 1 1 2 3 3 3 1 Snapin/Pallidin DUF1640 PF07798.11 ABA80851.1 - 0.005 16.9 1.2 0.0083 16.2 1.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1640) NPV_P10 PF05531.12 ABA80851.1 - 0.0052 17.2 0.4 0.35 11.4 0.0 2.4 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Phage_GP20 PF06810.11 ABA80851.1 - 0.0055 16.5 6.5 0.29 10.9 5.8 2.6 1 1 1 2 2 2 1 Phage minor structural protein GP20 DUF16 PF01519.16 ABA80851.1 - 0.0056 17.1 0.6 0.61 10.6 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF16 HemX PF04375.14 ABA80851.1 - 0.0059 15.9 12.2 0.01 15.2 5.0 2.4 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase DUF5082 PF16888.5 ABA80851.1 - 0.0067 16.7 1.6 2.1 8.6 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) ADIP PF11559.8 ABA80851.1 - 0.007 16.5 7.4 0.29 11.2 0.5 2.6 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding FlxA PF14282.6 ABA80851.1 - 0.009 16.0 1.2 0.035 14.1 0.6 2.3 1 1 1 2 2 2 1 FlxA-like protein CENP-F_N PF10481.9 ABA80851.1 - 0.011 15.4 1.2 0.016 14.8 1.2 1.2 1 0 0 1 1 1 0 Cenp-F N-terminal domain DivIC PF04977.15 ABA80851.1 - 0.011 15.4 7.4 0.37 10.6 0.8 3.5 1 1 2 3 3 3 0 Septum formation initiator IFT57 PF10498.9 ABA80851.1 - 0.012 14.6 0.8 0.031 13.2 0.7 1.8 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Prefoldin_2 PF01920.20 ABA80851.1 - 0.014 15.3 4.7 0.44 10.5 0.1 3.0 2 1 0 3 3 2 0 Prefoldin subunit KASH_CCD PF14662.6 ABA80851.1 - 0.015 15.1 6.5 0.029 14.2 2.5 2.4 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH Lebercilin PF15619.6 ABA80851.1 - 0.018 14.7 6.3 0.67 9.6 0.4 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF724 PF05266.14 ABA80851.1 - 0.018 14.9 3.2 0.026 14.3 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) ABC_tran_CTD PF16326.5 ABA80851.1 - 0.019 15.2 1.0 0.019 15.2 1.0 3.9 2 1 2 4 4 3 0 ABC transporter C-terminal domain DUF1664 PF07889.12 ABA80851.1 - 0.02 14.9 2.5 3.9 7.5 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) SHE3 PF17078.5 ABA80851.1 - 0.021 14.6 0.2 2.9 7.5 0.1 2.1 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Uso1_p115_C PF04871.13 ABA80851.1 - 0.033 14.5 2.5 0.033 14.5 2.5 3.8 2 2 2 4 4 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region UPF0242 PF06785.11 ABA80851.1 - 0.034 14.2 6.3 0.056 13.6 3.3 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Tropomyosin_1 PF12718.7 ABA80851.1 - 0.038 14.1 10.2 0.18 12.0 9.0 2.2 1 1 1 2 2 2 0 Tropomyosin like DUF4200 PF13863.6 ABA80851.1 - 0.043 14.2 7.8 0.34 11.3 3.2 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) DUF3584 PF12128.8 ABA80851.1 - 0.052 11.1 11.1 0.069 10.7 11.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4763 PF15960.5 ABA80851.1 - 0.062 12.6 0.9 0.99 8.7 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) DUF2730 PF10805.8 ABA80851.1 - 0.066 13.3 2.7 4.8 7.3 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DUF948 PF06103.11 ABA80851.1 - 0.068 13.4 1.6 4.8 7.5 0.1 2.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) TMF_TATA_bd PF12325.8 ABA80851.1 - 0.07 13.3 13.9 0.058 13.6 4.4 3.2 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding CCDC144C PF14915.6 ABA80851.1 - 0.073 12.2 5.4 0.13 11.4 4.3 1.6 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region LPP PF04728.13 ABA80851.1 - 0.076 13.4 7.5 6.2 7.3 0.3 4.2 2 1 0 2 2 2 0 Lipoprotein leucine-zipper AAA_13 PF13166.6 ABA80851.1 - 0.078 11.6 4.0 0.14 10.8 4.0 1.3 1 0 0 1 1 1 0 AAA domain BLOC1_2 PF10046.9 ABA80851.1 - 0.078 13.3 2.7 2.5 8.4 1.5 2.7 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Rab5-bind PF09311.11 ABA80851.1 - 0.096 12.1 6.0 0.064 12.6 2.2 2.1 1 1 1 2 2 2 0 Rabaptin-like protein Mod_r PF07200.13 ABA80851.1 - 0.12 12.5 7.5 0.31 11.2 0.8 2.3 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF4472 PF14739.6 ABA80851.1 - 0.13 13.0 7.0 4.6 8.0 1.0 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) Taxilin PF09728.9 ABA80851.1 - 0.15 11.2 5.6 0.29 10.3 2.1 2.1 2 0 0 2 2 2 0 Myosin-like coiled-coil protein MbeD_MobD PF04899.12 ABA80851.1 - 0.15 12.1 3.6 1.3 9.1 0.1 2.9 2 2 1 3 3 2 0 MbeD/MobD like DUF4795 PF16043.5 ABA80851.1 - 0.16 11.5 4.4 0.3 10.7 4.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Cnn_1N PF07989.11 ABA80851.1 - 0.16 12.1 2.2 10 6.3 0.6 3.0 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 Tektin PF03148.14 ABA80851.1 - 0.17 10.6 6.9 0.71 8.6 6.0 1.9 1 1 1 2 2 2 0 Tektin family SKA1 PF07160.12 ABA80851.1 - 0.18 11.6 2.4 1 9.1 0.3 2.4 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Tup_N PF08581.10 ABA80851.1 - 0.2 12.0 0.7 1.7 9.0 0.3 2.5 1 1 2 3 3 2 0 Tup N-terminal PRKG1_interact PF15898.5 ABA80851.1 - 0.22 12.5 6.8 0.42 11.5 3.1 2.5 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Golgin_A5 PF09787.9 ABA80851.1 - 0.23 10.9 8.1 0.26 10.7 6.5 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 ZapB PF06005.12 ABA80851.1 - 0.24 11.9 8.0 6.6 7.3 1.2 3.4 1 1 1 2 2 2 0 Cell division protein ZapB HOOK PF05622.12 ABA80851.1 - 0.3 9.2 6.5 0.17 10.0 2.6 1.7 1 1 1 2 2 2 0 HOOK protein SKA2 PF16740.5 ABA80851.1 - 0.3 10.9 3.4 0.68 9.7 1.1 2.4 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 HAUS-augmin3 PF14932.6 ABA80851.1 - 0.34 10.4 11.6 1.5 8.3 2.0 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 SOGA PF11365.8 ABA80851.1 - 0.35 12.0 6.4 0.89 10.7 1.8 3.3 1 1 2 3 3 3 0 Protein SOGA SPATA1_C PF15743.5 ABA80851.1 - 0.37 10.8 2.9 3.6 7.6 0.0 2.4 1 1 1 2 2 2 0 Spermatogenesis-associated C-terminus Cluap1 PF10234.9 ABA80851.1 - 0.4 10.0 5.4 8.5 5.7 0.1 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 Nup54 PF13874.6 ABA80851.1 - 0.48 10.5 5.6 0.51 10.4 4.3 1.7 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Leu_zip PF15294.6 ABA80851.1 - 0.48 9.9 5.4 0.84 9.1 3.7 1.7 1 1 1 2 2 2 0 Leucine zipper Ax_dynein_light PF10211.9 ABA80851.1 - 0.48 10.3 4.9 9.2 6.2 1.9 2.4 1 1 1 2 2 2 0 Axonemal dynein light chain GrpE PF01025.19 ABA80851.1 - 0.57 9.8 7.0 3.3 7.4 1.4 2.5 1 1 1 2 2 2 0 GrpE DUF812 PF05667.11 ABA80851.1 - 0.59 9.0 7.3 1 8.2 6.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF812) COG2 PF06148.11 ABA80851.1 - 0.61 10.2 4.7 9.7 6.3 1.8 2.5 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Jnk-SapK_ap_N PF09744.9 ABA80851.1 - 0.66 10.2 7.6 8.2 6.6 5.4 2.3 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 FliJ PF02050.16 ABA80851.1 - 0.71 10.1 11.8 0.5 10.6 5.1 2.8 1 1 2 3 3 3 0 Flagellar FliJ protein Syntaxin-6_N PF09177.11 ABA80851.1 - 0.8 10.3 3.9 2.7 8.6 1.3 2.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Laminin_II PF06009.12 ABA80851.1 - 0.83 9.7 5.6 3.6 7.6 3.6 2.3 1 1 2 3 3 3 0 Laminin Domain II OmpH PF03938.14 ABA80851.1 - 0.97 9.8 11.5 2.1 8.7 2.8 2.6 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) KELK PF15796.5 ABA80851.1 - 0.97 9.9 3.8 8.6 6.9 0.2 2.6 1 1 1 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF4618 PF15397.6 ABA80851.1 - 1 8.8 3.9 6.2 6.2 2.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) TMF_DNA_bd PF12329.8 ABA80851.1 - 1 9.4 13.0 1.5 8.9 0.1 4.0 2 1 3 6 6 5 0 TATA element modulatory factor 1 DNA binding FAM184 PF15665.5 ABA80851.1 - 1.1 9.0 9.3 6.2 6.6 9.3 2.0 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B Atg14 PF10186.9 ABA80851.1 - 1.1 8.3 4.4 5.7 5.9 2.2 1.8 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 HAP1_N PF04849.13 ABA80851.1 - 1.1 8.4 9.0 3.8 6.6 1.5 2.1 1 1 1 2 2 2 0 HAP1 N-terminal conserved region V-SNARE PF05008.15 ABA80851.1 - 1.5 9.3 4.9 1.9 8.9 1.9 2.4 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Seryl_tRNA_N PF02403.22 ABA80851.1 - 1.5 9.1 9.9 12 6.2 0.5 2.9 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Spc24 PF08286.11 ABA80851.1 - 1.6 9.0 8.6 11 6.3 2.1 3.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 BRE1 PF08647.11 ABA80851.1 - 1.6 8.9 7.2 1.9 8.6 3.1 2.6 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase zf-ZPR1 PF03367.13 ABA80851.1 - 1.7 8.5 3.0 14 5.5 0.6 2.2 1 1 1 2 2 2 0 ZPR1 zinc-finger domain DUF3450 PF11932.8 ABA80851.1 - 1.9 7.7 20.0 0.48 9.7 5.9 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF3450) zf-C4H2 PF10146.9 ABA80851.1 - 2 8.7 4.7 3.3 7.9 4.7 1.5 1 1 0 1 1 1 0 Zinc finger-containing protein Wtap PF17098.5 ABA80851.1 - 2 8.3 9.2 0.49 10.3 0.9 2.6 1 1 0 2 2 2 0 WTAP/Mum2p family DUF2968 PF11180.8 ABA80851.1 - 2.1 8.0 13.3 0.45 10.1 2.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) HMMR_N PF15905.5 ABA80851.1 - 2.5 7.5 9.4 5.8 6.3 1.9 2.1 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal CENP-H PF05837.12 ABA80851.1 - 2.5 8.5 11.8 11 6.5 2.6 2.7 1 1 1 2 2 2 0 Centromere protein H (CENP-H) TPR_MLP1_2 PF07926.12 ABA80851.1 - 2.8 8.0 22.8 0.83 9.7 0.9 2.7 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein MscS_porin PF12795.7 ABA80851.1 - 3.1 7.3 19.3 1.1 8.8 14.1 2.3 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain DASH_Spc19 PF08287.11 ABA80851.1 - 3.3 7.6 9.6 2.6 7.9 4.5 2.8 1 1 1 2 2 2 0 Spc19 DUF4140 PF13600.6 ABA80851.1 - 3.8 8.0 15.2 1.8e+04 -5.4 15.2 4.1 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) CLZ PF16526.5 ABA80851.1 - 4.3 7.8 12.6 17 5.8 1.3 4.0 1 1 4 5 5 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels BST2 PF16716.5 ABA80851.1 - 6.2 7.5 13.6 17 6.0 1.1 4.2 2 1 4 6 6 5 0 Bone marrow stromal antigen 2 DUF2203 PF09969.9 ABA80851.1 - 9.2 7.0 6.4 9.7 6.9 3.6 2.4 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) THOC7 PF05615.13 ABA80851.1 - 9.4 6.5 9.6 12 6.2 0.1 2.2 1 1 1 2 2 2 0 Tho complex subunit 7 HATPase_c PF02518.26 ABA80852.1 - 6.4e-22 78.2 0.0 1e-21 77.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA80852.1 - 1.2e-11 44.5 0.3 1.2e-11 44.5 0.3 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 ABA80852.1 - 7.2e-08 32.7 2.4 2.5e-07 31.0 0.4 3.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.6 ABA80852.1 - 0.00021 21.3 0.1 0.00021 21.3 0.1 2.3 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain Apolipoprotein PF01442.18 ABA80852.1 - 0.0099 15.8 2.7 1.1 9.1 0.4 3.1 2 1 1 3 3 3 2 Apolipoprotein A1/A4/E domain HATPase_c_3 PF13589.6 ABA80852.1 - 0.025 14.4 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 ABA80852.1 - 0.05 13.5 0.0 0.086 12.8 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Trans_reg_C PF00486.28 ABA80853.1 - 7.9e-25 86.7 0.0 1.5e-24 85.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 ABA80853.1 - 1.1e-24 86.7 0.0 1.6e-24 86.2 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trypsin_2 PF13365.6 ABA80854.1 - 1.1e-37 130.3 0.7 2e-37 129.4 0.7 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 ABA80854.1 - 2.1e-28 98.5 1.2 3.6e-17 62.5 0.1 3.6 4 0 0 4 4 4 2 PDZ domain PDZ_6 PF17820.1 ABA80854.1 - 1.8e-18 66.1 5.4 6.6e-12 45.1 0.5 3.5 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 ABA80854.1 - 1.1e-17 64.1 4.3 1.8e-11 44.2 0.2 3.9 4 0 0 4 4 4 2 PDZ domain Trypsin PF00089.26 ABA80854.1 - 3.5e-17 63.0 0.1 5.2e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 Trypsin Tricorn_PDZ PF14685.6 ABA80854.1 - 2.5e-07 30.5 1.1 0.00011 22.1 0.2 3.0 3 0 0 3 3 3 2 Tricorn protease PDZ domain Peptidase_S46 PF10459.9 ABA80854.1 - 5.7e-05 22.0 0.1 0.14 10.7 0.0 2.1 2 0 0 2 2 2 2 Peptidase S46 PDZ_1 PF12812.7 ABA80854.1 - 0.00025 21.0 0.0 0.12 12.4 0.0 2.5 2 0 0 2 2 2 2 PDZ-like domain Peptidase_S29 PF02907.15 ABA80854.1 - 0.0024 17.6 0.0 0.0075 16.0 0.0 1.8 2 0 0 2 2 2 1 Hepatitis C virus NS3 protease SH3_12 PF18129.1 ABA80854.1 - 0.1 12.7 2.4 1 9.5 0.1 3.1 3 0 0 3 3 3 0 Xrn1 SH3-like domain MFS_1 PF07690.16 ABA80855.1 - 5.3e-24 84.8 64.6 8.7e-14 51.2 28.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 ABA80855.1 - 0.00085 18.3 13.4 0.00085 18.3 13.4 2.2 3 1 1 4 4 4 1 Sugar (and other) transporter DUF4407 PF14362.6 ABA80855.1 - 5.1 6.3 6.5 13 5.1 6.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DAP_B PF07930.12 ABA80856.1 - 1.4e-56 191.4 0.0 2.1e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 D-aminopeptidase, domain B Beta-lactamase PF00144.24 ABA80856.1 - 3.2e-44 151.5 0.3 4.7e-44 151.0 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase SBP_bac_5 PF00496.22 ABA80857.1 - 4.1e-96 322.2 0.4 5.5e-96 321.8 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Band_7 PF01145.25 ABA80857.1 - 0.052 13.5 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 SPFH domain / Band 7 family ABC_tran PF00005.27 ABA80858.1 - 9.6e-60 201.0 0.0 7.4e-29 101.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 ABA80858.1 - 6.4e-19 68.2 0.2 4.8e-09 36.6 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA80858.1 - 1.3e-13 51.4 2.7 1.7e-06 28.0 0.0 4.5 2 2 2 5 5 5 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA80858.1 - 4.9e-11 43.0 3.4 0.00025 21.3 0.2 3.7 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 ABA80858.1 - 7.1e-08 33.0 5.2 0.0025 18.2 1.3 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 ABA80858.1 - 2.8e-07 30.2 1.8 0.011 15.5 0.3 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 ABA80858.1 - 9.9e-07 28.4 1.7 0.11 12.0 0.1 3.9 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 ABA80858.1 - 1.5e-05 25.0 0.2 0.012 15.7 0.1 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 ABA80858.1 - 2.9e-05 24.1 0.8 0.1 12.5 0.3 2.3 2 0 0 2 2 2 2 RsgA GTPase Mg_chelatase PF01078.21 ABA80858.1 - 2.9e-05 23.5 0.2 0.31 10.4 0.1 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 ABA80858.1 - 0.0002 21.6 0.7 0.11 12.7 0.0 3.0 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 ABA80858.1 - 0.00021 21.2 1.5 0.21 11.5 0.1 2.5 2 0 0 2 2 2 2 NACHT domain AAA_5 PF07728.14 ABA80858.1 - 0.00046 20.2 0.7 0.87 9.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA80858.1 - 0.00057 20.3 0.3 0.46 10.9 0.1 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 ABA80858.1 - 0.00077 20.0 0.1 0.48 11.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.17 ABA80858.1 - 0.0011 18.8 0.0 0.19 11.4 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein NB-ARC PF00931.22 ABA80858.1 - 0.0019 17.4 0.9 0.51 9.5 0.1 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.6 ABA80858.1 - 0.0021 17.8 0.1 0.12 12.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 ABA80858.1 - 0.0026 17.3 0.3 1.2 8.6 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region PRK PF00485.18 ABA80858.1 - 0.0032 17.2 0.0 0.21 11.3 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.26 ABA80858.1 - 0.0036 17.0 0.8 1.3 8.7 0.1 2.9 3 0 0 3 3 3 1 Sigma-54 interaction domain MeaB PF03308.16 ABA80858.1 - 0.0037 16.3 2.6 0.24 10.4 0.3 2.6 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 ABA80858.1 - 0.0037 17.1 1.4 1.5 8.7 0.1 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 ABA80858.1 - 0.0088 16.6 0.0 1.1 9.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 ABA80858.1 - 0.013 14.8 1.7 1.2 8.4 0.1 2.6 3 0 0 3 3 2 0 KaiC RNA_helicase PF00910.22 ABA80858.1 - 0.014 15.8 0.9 3.8 8.0 0.1 2.3 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.17 ABA80858.1 - 0.021 14.6 0.5 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF87 PF01935.17 ABA80858.1 - 0.021 14.9 2.4 0.26 11.3 0.7 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain Roc PF08477.13 ABA80858.1 - 0.026 14.7 0.3 6.9 6.9 0.1 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF3987 PF13148.6 ABA80858.1 - 0.033 13.2 2.2 12 4.8 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3987) PhoH PF02562.16 ABA80858.1 - 0.037 13.5 0.1 7.1 6.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein APS_kinase PF01583.20 ABA80858.1 - 0.037 13.9 0.5 2.9 7.8 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase ABC_ATPase PF09818.9 ABA80858.1 - 0.043 12.6 1.7 3.4 6.4 0.1 3.4 3 1 0 3 3 3 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.25 ABA80858.1 - 0.052 13.2 0.2 0.48 10.1 0.1 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 ABA80858.1 - 0.066 13.2 0.7 14 5.7 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Dynamin_N PF00350.23 ABA80858.1 - 0.095 12.8 0.3 0.56 10.2 0.0 2.1 2 0 0 2 2 2 0 Dynamin family AAA_25 PF13481.6 ABA80858.1 - 0.12 11.9 6.5 8 6.0 2.9 3.8 3 1 0 3 3 3 0 AAA domain cobW PF02492.19 ABA80858.1 - 0.14 11.8 0.8 9.9 5.7 0.3 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.18 ABA80858.1 - 0.18 11.1 2.2 2.8 7.2 0.2 2.7 2 1 1 3 3 3 0 FtsK/SpoIIIE family Septin PF00735.18 ABA80858.1 - 0.21 10.9 0.3 0.82 8.9 0.0 1.8 2 0 0 2 2 2 0 Septin Adeno_IVa2 PF02456.15 ABA80858.1 - 0.33 9.7 0.7 12 4.6 0.1 2.5 3 0 0 3 3 3 0 Adenovirus IVa2 protein DUF815 PF05673.13 ABA80858.1 - 0.68 9.0 2.2 4.5 6.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) BPD_transp_1 PF00528.22 ABA80859.1 - 5.2e-24 85.0 21.5 5.2e-24 85.0 21.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA80859.1 - 8.6e-07 28.8 1.5 8.6e-07 28.8 1.5 3.7 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 ABA80860.1 - 6e-39 133.7 12.8 6e-39 133.7 12.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA80861.1 - 1.2e-58 197.5 0.0 6.5e-29 101.2 0.0 2.1 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 ABA80861.1 - 7.2e-17 61.7 0.1 3.7e-08 33.8 0.0 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA80861.1 - 4.2e-11 43.2 4.8 2.1e-06 27.8 0.1 3.7 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80861.1 - 1.1e-10 41.3 0.0 0.0008 18.9 0.0 3.1 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80861.1 - 5.7e-08 32.4 0.3 0.003 17.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA80861.1 - 1.3e-05 24.9 1.5 0.34 10.5 0.0 4.0 4 0 0 4 4 4 2 AAA domain RsgA_GTPase PF03193.16 ABA80861.1 - 1.9e-05 24.6 0.0 0.024 14.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 ABA80861.1 - 2.3e-05 24.7 7.4 0.18 12.1 0.6 4.0 3 1 0 3 3 3 1 AAA domain TniB PF05621.11 ABA80861.1 - 3.4e-05 23.3 3.6 0.021 14.2 0.3 3.8 4 0 0 4 4 4 1 Bacterial TniB protein Mg_chelatase PF01078.21 ABA80861.1 - 9.3e-05 21.9 1.5 0.2 11.0 0.0 3.2 4 0 0 4 4 3 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 ABA80861.1 - 0.00016 21.4 1.5 0.045 13.5 0.0 3.1 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_16 PF13191.6 ABA80861.1 - 0.00027 21.4 2.8 0.13 12.6 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain ATP-synt_ab PF00006.25 ABA80861.1 - 0.001 18.8 0.0 0.84 9.2 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 ABA80861.1 - 0.0037 17.7 0.8 0.66 10.4 0.0 3.2 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 ABA80861.1 - 0.0038 17.8 0.0 0.14 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 ABA80861.1 - 0.0046 16.7 0.2 0.53 10.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase PF06745.13 ABA80861.1 - 0.0046 16.3 1.4 1.5 8.1 0.1 2.7 3 0 0 3 3 3 2 KaiC PRK PF00485.18 ABA80861.1 - 0.0047 16.7 0.1 0.75 9.5 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family ABC_ATPase PF09818.9 ABA80861.1 - 0.007 15.2 2.4 0.04 12.7 0.2 3.1 3 1 0 3 3 3 1 Predicted ATPase of the ABC class AAA_24 PF13479.6 ABA80861.1 - 0.011 15.5 0.3 1.2 8.8 0.0 2.5 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 ABA80861.1 - 0.017 15.0 3.0 2.1 8.2 0.1 3.3 3 0 0 3 3 3 0 NACHT domain AAA_7 PF12775.7 ABA80861.1 - 0.018 14.5 0.0 0.93 9.0 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_15 PF13175.6 ABA80861.1 - 0.03 14.0 0.0 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 ABA80861.1 - 0.066 13.6 0.3 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.14 ABA80861.1 - 0.07 13.1 0.6 0.68 9.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF815 PF05673.13 ABA80861.1 - 0.091 11.9 0.1 0.33 10.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_33 PF13671.6 ABA80861.1 - 0.096 12.8 0.3 5.4 7.2 0.0 2.8 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 ABA80861.1 - 0.11 12.6 0.1 0.88 9.7 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.17 ABA80861.1 - 0.13 12.3 2.3 9.2 6.3 0.0 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain APS_kinase PF01583.20 ABA80861.1 - 0.17 11.7 0.1 5.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase NB-ARC PF00931.22 ABA80861.1 - 0.55 9.4 1.6 2 7.6 0.0 2.4 3 0 0 3 3 3 0 NB-ARC domain Zeta_toxin PF06414.12 ABA80861.1 - 1 8.6 5.7 0.86 8.8 0.0 2.6 3 0 0 3 3 2 0 Zeta toxin FmdA_AmdA PF03069.15 ABA80862.1 - 2.2e-60 204.5 0.0 3e-36 125.1 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family SBP_bac_5 PF00496.22 ABA80863.1 - 6e-102 341.4 0.0 7.5e-102 341.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 ABA80864.1 - 5.4e-43 146.9 16.1 5.4e-43 146.9 16.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA80865.1 - 3.8e-23 82.2 15.5 3.8e-23 82.2 15.5 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA80865.1 - 2.3e-08 33.9 0.0 2.3e-08 33.9 0.0 3.1 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ANTAR PF03861.14 ABA80866.1 - 2.2e-07 30.6 7.6 4.2e-07 29.7 7.6 1.5 1 0 0 1 1 1 1 ANTAR domain Peripla_BP_5 PF13433.6 ABA80867.1 - 1.1e-71 241.7 0.0 5.2e-70 236.3 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain Peripla_BP_6 PF13458.6 ABA80867.1 - 3.1e-34 119.2 0.0 8.5e-34 117.7 0.0 1.6 1 1 1 2 2 2 1 Periplasmic binding protein Aminotran_3 PF00202.21 ABA80868.2 - 5.1e-95 318.5 0.0 6.1e-95 318.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III 4HBT_2 PF13279.6 ABA80869.1 - 5.8e-12 46.2 0.0 7e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 ABA80869.1 - 1.7e-08 34.7 0.2 2.9e-08 33.9 0.2 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 ABA80869.1 - 0.0003 20.1 0.0 0.38 10.0 0.1 2.1 2 0 0 2 2 2 2 Acyl-ACP thioesterase Copper-bind PF00127.20 ABA80870.1 - 1.1e-08 35.4 0.0 1.6e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 ABA80870.1 - 5.9e-08 32.8 0.0 1e-06 28.8 0.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain SoxE PF06525.11 ABA80870.1 - 0.014 14.9 0.0 0.023 14.2 0.0 1.6 1 1 0 1 1 1 0 Sulfocyanin (SoxE) domain Cu-oxidase PF00394.22 ABA80870.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 Multicopper oxidase Cytochrome_CBB3 PF13442.6 ABA80871.1 - 2e-12 47.3 0.0 3.2e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 ABA80871.1 - 2.8e-12 47.6 0.0 3.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Cytochrome c Cytochrom_C1 PF02167.15 ABA80871.1 - 0.13 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C1 family FBPase PF00316.20 ABA80874.1 - 9.6e-44 149.1 0.0 1.3e-43 148.6 0.0 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PRK PF00485.18 ABA80875.1 - 5e-75 251.6 0.1 6.1e-75 251.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.12 ABA80875.1 - 0.04 13.2 0.0 0.21 10.9 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin APS_kinase PF01583.20 ABA80875.1 - 0.047 13.6 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Transketolase_N PF00456.21 ABA80876.1 - 3.2e-149 496.4 0.1 4.6e-149 495.9 0.1 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 ABA80876.1 - 1.1e-49 168.5 0.1 2.7e-49 167.3 0.1 1.7 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 ABA80876.1 - 7.5e-16 58.1 0.0 1.6e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.6 ABA80876.1 - 1.6e-09 37.4 0.0 3.3e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 ABA80876.1 - 2e-05 24.4 1.3 0.0003 20.6 0.9 2.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 ABA80876.1 - 0.00034 19.7 0.0 0.00069 18.7 0.0 1.4 1 0 0 1 1 1 1 Dehydrogenase E1 component Gp_dh_C PF02800.20 ABA80877.1 - 3.5e-67 224.9 0.0 5e-67 224.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 ABA80877.1 - 3.5e-33 114.0 0.1 8.1e-33 112.8 0.1 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 ABA80877.1 - 0.023 14.8 0.3 0.047 13.8 0.2 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 ABA80877.1 - 0.21 12.2 1.6 0.51 11.0 0.1 2.4 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain F_bP_aldolase PF01116.20 ABA80878.1 - 1.6e-88 296.8 0.2 1.9e-88 296.6 0.2 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II RuBisCO_large PF00016.20 ABA80879.1 - 5.9e-124 413.1 0.4 9.1e-124 412.5 0.4 1.2 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 ABA80879.1 - 2.9e-40 137.2 0.0 4.8e-40 136.5 0.0 1.3 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain G_glu_transpept PF01019.21 ABA80880.1 - 8.6e-155 516.4 0.0 9.9e-155 516.2 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase ABC2_membrane PF01061.24 ABA80881.1 - 1.4e-32 112.8 26.7 1.4e-32 112.8 26.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 ABA80881.1 - 6.8e-07 28.7 30.6 9.2e-07 28.3 30.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2976 PF11190.8 ABA80881.1 - 3 7.7 9.5 6.8 6.6 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2976) ABC_tran PF00005.27 ABA80882.1 - 3.9e-34 118.1 0.0 5.7e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80882.1 - 2.1e-11 44.2 0.0 6.1e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 ABA80882.1 - 0.00018 22.1 0.1 0.00028 21.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA80882.1 - 0.00024 20.9 0.0 0.0042 16.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 ABA80882.1 - 0.0011 19.4 0.2 0.022 15.2 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 ABA80882.1 - 0.0013 18.4 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA80882.1 - 0.0018 18.7 0.0 0.0043 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 ABA80882.1 - 0.007 15.8 0.0 0.098 12.1 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Hydrolase PF00702.26 ABA80882.1 - 0.0098 16.2 0.1 0.025 14.9 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Mg_chelatase PF01078.21 ABA80882.1 - 0.013 14.9 0.0 0.047 13.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 ABA80882.1 - 0.015 14.9 0.3 0.046 13.3 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA80882.1 - 0.022 14.5 0.4 0.056 13.2 0.2 1.9 1 1 1 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA80882.1 - 0.024 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 ABA80882.1 - 0.031 14.0 0.4 0.83 9.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.6 ABA80882.1 - 0.035 14.8 0.0 0.094 13.4 0.0 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4162) TsaE PF02367.17 ABA80882.1 - 0.065 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 ABA80882.1 - 0.081 12.1 0.2 0.7 9.0 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.22 ABA80882.1 - 0.1 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 ABA80882.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain cobW PF02492.19 ABA80882.1 - 0.12 11.9 0.2 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 ABA80882.1 - 0.15 11.8 0.1 1.5 8.5 0.0 2.2 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 ABA80882.1 - 0.15 12.3 0.1 0.74 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 ABA80883.1 - 1.1e-61 206.4 0.0 1.7e-61 205.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 ABA80883.1 - 3.3e-14 52.5 3.1 3.3e-14 52.5 3.1 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 ABA80883.1 - 5.6e-14 52.3 0.0 1.1e-13 51.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 ABA80883.1 - 2.2e-05 24.2 0.0 0.00021 21.0 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 ABA80883.1 - 6.3e-05 22.2 0.0 9.3e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 ABA80883.1 - 0.0012 18.6 0.0 0.022 14.5 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 ABA80883.1 - 0.0032 17.9 0.0 0.0051 17.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA80883.1 - 0.057 13.8 2.6 0.53 10.6 2.6 2.6 1 1 0 1 1 1 0 AAA ATPase domain DUF58 PF01882.18 ABA80884.1 - 4.8e-14 52.4 0.2 9.6e-14 51.4 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF4381 PF14316.6 ABA80885.1 - 0.0051 17.0 0.4 0.0063 16.8 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) VWA PF00092.28 ABA80886.1 - 1.5e-23 83.9 0.0 1.8e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 ABA80886.1 - 5.3e-18 65.6 0.1 8.6e-18 65.0 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.11 ABA80886.1 - 0.0024 17.1 2.5 0.0073 15.5 0.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1194) VWA_CoxE PF05762.14 ABA80886.1 - 0.0058 16.1 4.8 0.031 13.6 4.3 2.1 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 ABA80886.1 - 0.0066 16.4 0.7 0.015 15.3 0.1 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 ABA80887.1 - 1.6e-07 31.9 0.0 2.4e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain TPR_2 PF07719.17 ABA80888.1 - 4e-06 26.5 5.8 0.0016 18.4 0.2 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 ABA80888.1 - 3.1e-05 23.6 2.1 0.0012 18.5 0.1 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 ABA80888.1 - 0.00067 20.3 20.3 0.0025 18.4 1.8 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 ABA80888.1 - 0.018 15.3 2.4 0.15 12.4 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 ABA80888.1 - 0.12 13.2 0.3 0.12 13.2 0.3 3.8 3 2 1 4 4 4 0 Tetratricopeptide repeat TetR_C_20 PF17925.1 ABA80888.1 - 0.14 12.4 2.1 1.1 9.6 0.1 2.2 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TPR_10 PF13374.6 ABA80888.1 - 2.8 7.9 5.4 35 4.4 0.1 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat BatD PF13584.6 ABA80889.1 - 2e-26 92.9 0.0 2.7e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Oxygen tolerance GFO_IDH_MocA PF01408.22 ABA80890.2 - 1.3e-21 77.7 0.2 1.9e-21 77.1 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 ABA80890.2 - 5e-05 23.3 0.0 8.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 ABA80890.2 - 0.00045 19.6 0.2 0.00072 19.0 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 ABA80890.2 - 0.00054 20.2 0.1 0.00094 19.4 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 ABA80890.2 - 0.0037 17.8 1.7 0.007 16.9 1.7 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 ABA80890.2 - 0.023 15.4 0.8 0.04 14.6 0.8 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain TPP_enzyme_C PF02775.21 ABA80891.1 - 2.7e-38 131.1 2.0 8.3e-38 129.6 0.2 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 ABA80891.1 - 5.8e-37 126.9 0.4 1.7e-36 125.4 0.4 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 ABA80891.1 - 1.8e-34 118.4 0.0 5.6e-34 116.8 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 ABA80891.1 - 0.055 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit AP_endonuc_2 PF01261.24 ABA80892.1 - 2.2e-23 82.8 2.5 9.6e-22 77.5 0.5 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 ABA80892.1 - 0.014 15.1 0.0 0.075 12.8 0.0 2.2 2 0 0 2 2 2 0 AP endonuclease family 2 C terminus KduI PF04962.12 ABA80893.1 - 5.6e-104 347.1 0.0 6.6e-104 346.8 0.0 1.0 1 0 0 1 1 1 1 KduI/IolB family Cupin_2 PF07883.11 ABA80893.1 - 0.13 12.0 1.5 27 4.6 0.0 3.1 3 0 0 3 3 3 0 Cupin domain ABC_tran PF00005.27 ABA80894.1 - 1e-32 113.5 0.0 1.6e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA80894.1 - 2e-11 43.9 0.3 5.6e-11 42.4 0.3 1.8 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 ABA80894.1 - 1.5e-09 38.5 0.2 7.3e-09 36.3 0.2 2.3 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 ABA80894.1 - 3.2e-06 27.2 0.0 0.01 15.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80894.1 - 3.8e-06 26.5 0.1 1.3e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 ABA80894.1 - 0.00017 21.5 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase CysA_C_terminal PF17850.1 ABA80894.1 - 0.00035 21.1 1.7 0.001 19.6 0.6 2.4 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 ABA80894.1 - 0.00047 20.6 0.2 0.00078 19.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA80894.1 - 0.0008 19.1 0.0 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 ABA80894.1 - 0.00089 19.6 0.1 0.0014 18.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA80894.1 - 0.0029 18.1 0.0 0.0047 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 ABA80894.1 - 0.0072 16.8 0.0 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 ABA80894.1 - 0.01 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 ABA80894.1 - 0.015 15.6 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 ABA80894.1 - 0.018 15.0 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 ABA80894.1 - 0.026 14.7 1.0 0.056 13.6 0.1 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA80894.1 - 0.035 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 ABA80894.1 - 0.036 13.8 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA80894.1 - 0.04 13.5 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA80894.1 - 0.058 13.4 0.1 0.34 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 ABA80894.1 - 0.075 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase TOBE PF03459.17 ABA80894.1 - 0.088 13.1 0.0 0.28 11.5 0.0 1.8 1 0 0 1 1 1 0 TOBE domain AAA_18 PF13238.6 ABA80894.1 - 0.11 13.1 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA80894.1 - 0.12 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 ABA80894.1 - 0.12 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 ABA80894.1 - 0.13 11.5 0.1 0.2 10.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 ABA80894.1 - 0.14 12.6 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Adeno_IVa2 PF02456.15 ABA80894.1 - 0.19 10.5 0.0 0.3 9.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein Cytidylate_kin PF02224.18 ABA80894.1 - 0.19 11.4 1.1 1.5 8.5 0.8 2.3 1 1 0 1 1 1 0 Cytidylate kinase BPD_transp_1 PF00528.22 ABA80895.1 - 3.5e-18 66.0 18.9 3.5e-18 66.0 18.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component NdhL PF10716.9 ABA80895.1 - 0.14 12.1 0.3 0.14 12.1 0.3 3.7 4 0 0 4 4 4 0 NADH dehydrogenase transmembrane subunit BPD_transp_1 PF00528.22 ABA80896.1 - 2.3e-16 60.1 16.3 2.3e-16 60.1 16.3 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SAYSvFN PF10260.9 ABA80896.1 - 1 9.3 5.4 0.84 9.6 0.1 3.0 3 0 0 3 3 3 0 Uncharacterized conserved domain (SAYSvFN) SBP_bac_8 PF13416.6 ABA80897.1 - 6e-38 131.3 8.5 8.2e-38 130.8 8.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA80897.1 - 1.5e-30 107.3 11.7 2.4e-30 106.6 11.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA80897.1 - 0.00011 21.7 0.0 0.039 13.4 0.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Na_Pi_cotrans PF02690.15 ABA80898.1 - 2.7e-41 140.9 27.1 4.7e-32 111.0 13.3 2.3 2 0 0 2 2 2 2 Na+/Pi-cotransporter PhoU PF01895.19 ABA80898.1 - 5.2e-17 62.1 9.2 4e-10 40.0 2.7 2.3 2 0 0 2 2 2 2 PhoU domain Protoglobin PF11563.8 ABA80898.1 - 0.0067 16.3 0.1 0.053 13.4 0.0 2.4 3 0 0 3 3 3 1 Protoglobin GMC_oxred_N PF00732.19 ABA80899.1 - 8e-83 278.2 0.0 1.1e-82 277.8 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 ABA80899.1 - 1.2e-36 126.4 0.0 1.8e-36 125.8 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 ABA80899.1 - 1.7e-10 40.6 0.1 5.9e-06 25.6 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 ABA80899.1 - 3.1e-05 23.2 0.0 5.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.17 ABA80899.1 - 8.1e-05 22.0 0.0 0.0027 17.0 0.1 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 ABA80899.1 - 0.00024 21.3 0.0 0.00081 19.6 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 ABA80899.1 - 0.00028 20.6 3.5 0.0057 16.3 3.5 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 ABA80899.1 - 0.00041 19.6 0.0 0.11 11.5 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 ABA80899.1 - 0.003 16.9 0.0 0.0082 15.4 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA80899.1 - 0.039 12.7 0.0 0.067 11.9 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein ApbA PF02558.16 ABA80899.1 - 0.052 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 ABA80899.1 - 0.072 13.4 0.0 0.36 11.1 0.0 2.2 3 0 0 3 3 2 0 TrkA-N domain Pyr_redox_3 PF13738.6 ABA80899.1 - 0.17 11.1 0.0 0.72 9.0 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase BPD_transp_2 PF02653.16 ABA80900.1 - 4.4e-37 127.7 35.9 4.4e-37 127.7 35.9 1.5 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Glycogen_syn PF05693.13 ABA80900.1 - 0.11 11.1 0.1 0.14 10.7 0.1 1.1 1 0 0 1 1 1 0 Glycogen synthase BPD_transp_2 PF02653.16 ABA80901.1 - 6.1e-40 137.1 41.5 7.3e-40 136.8 41.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 ABA80902.1 - 3.1e-24 86.0 0.0 4.1e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80902.1 - 9.4e-07 28.9 0.0 0.0058 16.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 ABA80902.1 - 0.0028 17.6 0.1 0.0042 17.0 0.1 1.3 1 0 0 1 1 1 1 NACHT domain SMC_N PF02463.19 ABA80902.1 - 0.0055 16.2 0.0 2.3 7.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA80902.1 - 0.0093 16.4 0.0 0.012 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 ABA80902.1 - 0.014 15.1 0.2 0.16 11.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 ABA80902.1 - 0.022 13.7 1.2 0.079 11.9 0.6 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 ABA80902.1 - 0.025 14.9 0.1 0.086 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA80902.1 - 0.03 14.2 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 ABA80902.1 - 0.036 14.4 0.2 0.076 13.3 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA80902.1 - 0.036 14.6 0.0 0.046 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 ABA80902.1 - 0.077 12.6 0.3 0.13 11.9 0.3 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP-synt_ab PF00006.25 ABA80902.1 - 0.11 12.1 0.7 0.17 11.5 0.6 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 ABA80902.1 - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 ABA80902.1 - 0.15 11.7 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 ABA80903.1 - 1e-28 100.6 0.0 1.4e-28 100.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80903.1 - 9.4e-08 32.2 0.2 0.0027 17.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 ABA80903.1 - 2.6e-06 27.2 0.0 7.3e-06 25.8 0.0 1.8 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 ABA80903.1 - 0.00017 21.1 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA80903.1 - 0.00028 21.5 0.1 0.00039 21.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 ABA80903.1 - 0.00049 19.8 0.0 0.00082 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 ABA80903.1 - 0.00078 19.1 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_15 PF13175.6 ABA80903.1 - 0.00094 19.0 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA80903.1 - 0.0015 18.8 0.0 0.0038 17.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA80903.1 - 0.0019 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA80903.1 - 0.0079 15.9 0.4 0.024 14.4 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA80903.1 - 0.05 13.8 0.1 0.07 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA80903.1 - 0.062 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 ABA80903.1 - 0.067 12.5 0.0 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin Rad17 PF03215.15 ABA80903.1 - 0.079 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 ABA80903.1 - 0.096 12.7 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SH3_11 PF18103.1 ABA80903.1 - 0.1 12.8 0.4 0.36 11.0 0.1 2.1 2 0 0 2 2 2 0 Retroviral integrase C-terminal SH3 domain Thymidylate_kin PF02223.17 ABA80903.1 - 0.17 11.5 0.0 0.66 9.6 0.0 1.7 1 1 1 2 2 2 0 Thymidylate kinase Peripla_BP_6 PF13458.6 ABA80904.1 - 4.4e-80 269.9 11.1 6.3e-80 269.4 11.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 ABA80904.1 - 3.6e-20 72.3 1.2 7.4e-20 71.2 1.2 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 ABA80904.1 - 4.2e-11 42.6 0.0 7.8e-11 41.7 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region LysR_substrate PF03466.20 ABA80905.1 - 2e-29 102.5 0.2 2e-29 102.5 0.2 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80905.1 - 1.2e-18 66.8 1.1 2.1e-18 66.0 0.4 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA80905.1 - 0.0037 17.0 0.4 0.0085 15.9 0.4 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MOSP_N PF02707.16 ABA80905.1 - 0.038 13.8 0.0 0.06 13.1 0.0 1.2 1 0 0 1 1 1 0 Major Outer Sheath Protein N-terminal region DUF2089 PF09862.9 ABA80905.1 - 0.18 11.9 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) NMT1_3 PF16868.5 ABA80907.1 - 2.5e-27 96.1 0.0 3.1e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 ABA80907.1 - 0.0001 22.0 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 ABA80907.1 - 0.0047 16.9 0.0 0.0095 15.9 0.0 1.5 2 0 0 2 2 2 1 NMT1/THI5 like SBP_bac_3 PF00497.20 ABA80907.1 - 0.011 15.2 0.0 0.033 13.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DUF1194 PF06707.11 ABA80908.1 - 2.4e-61 206.6 0.0 2.8e-61 206.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) Aldolase PF01081.19 ABA80909.1 - 6.8e-25 87.6 0.1 7.6e-25 87.5 0.1 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 ABA80909.1 - 0.0013 18.1 0.0 10 5.3 0.0 3.0 1 1 2 3 3 3 3 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 ABA80909.1 - 0.0029 17.0 0.3 0.016 14.5 0.0 2.3 3 0 0 3 3 3 1 Thiamine monophosphate synthase Response_reg PF00072.24 ABA80910.1 - 2.4e-24 85.6 0.0 2.7e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MCPsignal PF00015.21 ABA80911.1 - 4.4e-33 114.5 33.5 3.1e-31 108.5 19.9 3.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 ABA80911.1 - 1.5e-10 40.9 5.1 7.2e-10 38.7 0.2 2.9 3 0 0 3 3 3 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 ABA80911.1 - 2.8e-08 34.0 2.7 2.8e-08 34.0 2.7 3.8 5 0 0 5 5 5 1 HAMP domain Syntaxin-6_N PF09177.11 ABA80911.1 - 0.04 14.5 1.4 6.7 7.3 0.1 3.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal COG2 PF06148.11 ABA80911.1 - 0.36 10.9 3.1 11 6.2 0.7 3.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.12 ABA80911.1 - 1.5 8.9 13.2 0.26 11.4 1.9 2.8 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF948 PF06103.11 ABA80911.1 - 2.3 8.5 10.2 9.1 6.6 2.3 3.7 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF11 PF01345.18 ABA80911.1 - 4 7.8 9.2 0.65 10.3 3.6 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF11 CENP-H PF05837.12 ABA80911.1 - 4.9 7.6 18.9 2.5 8.5 1.0 3.9 2 1 2 4 4 4 0 Centromere protein H (CENP-H) DUF2203 PF09969.9 ABA80911.1 - 5 7.9 12.5 7.3 7.3 0.3 4.2 2 1 0 4 4 4 0 Uncharacterized conserved protein (DUF2203) ABC1 PF03109.16 ABA80913.1 - 5.3e-29 100.8 0.0 7.9e-29 100.2 0.0 1.3 1 0 0 1 1 1 1 ABC1 family LprI PF07007.12 ABA80914.1 - 2.2e-11 44.3 9.0 3.4e-11 43.7 9.0 1.3 1 0 0 1 1 1 1 Lysozyme inhibitor LprI TSC21 PF15217.6 ABA80914.1 - 0.13 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 TSC21 family Ldl_recept_b PF00058.17 ABA80914.1 - 0.14 12.7 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 Low-density lipoprotein receptor repeat class B WGR PF05406.15 ABA80915.1 - 1.1e-13 51.0 0.0 1.3e-13 50.8 0.0 1.0 1 0 0 1 1 1 1 WGR domain EamA PF00892.20 ABA80916.1 - 7e-30 104.0 39.4 4.8e-16 59.2 21.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family HTH_18 PF12833.7 ABA80917.2 - 7.8e-20 70.9 2.5 1.6e-19 69.9 2.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA80917.2 - 7.4e-14 51.4 0.0 1.4e-07 31.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding_2 PF14525.6 ABA80917.2 - 0.0031 17.2 7.5 0.0031 17.2 7.5 2.3 1 1 1 2 2 2 1 AraC-binding-like domain AraC_binding PF02311.19 ABA80917.2 - 0.0065 16.4 1.8 0.018 15.0 0.3 2.1 2 0 0 2 2 2 1 AraC-like ligand binding domain DUF134 PF02001.16 ABA80917.2 - 0.0086 16.6 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF134 Cupin_2 PF07883.11 ABA80917.2 - 0.01 15.6 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.22 ABA80917.2 - 0.01 15.8 0.1 4.1 7.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix HTH_28 PF13518.6 ABA80917.2 - 0.013 15.6 3.0 1.9 8.6 0.2 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_8 PF02954.19 ABA80917.2 - 0.013 15.3 0.1 0.013 15.3 0.1 2.5 3 1 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_35 PF13693.6 ABA80917.2 - 0.013 15.5 0.7 2.3 8.3 0.1 2.4 1 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 ABA80917.2 - 0.034 13.9 0.8 3.9 7.4 0.1 2.6 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 ABA80917.2 - 0.037 14.1 1.4 0.13 12.3 0.6 2.3 1 1 1 2 2 2 0 Winged helix-turn helix MarR_2 PF12802.7 ABA80917.2 - 0.082 12.8 5.5 1.8 8.5 0.3 3.0 3 0 0 3 3 3 0 MarR family TetR_N PF00440.23 ABA80917.2 - 0.1 12.4 0.1 1.7 8.5 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.6 ABA80917.2 - 0.14 12.0 3.5 0.65 9.9 0.3 3.0 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain RHH_1 PF01402.21 ABA80917.2 - 2.7 8.1 7.6 0.48 10.4 0.8 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HTH_31 PF13560.6 ABA80917.2 - 3.2 8.2 14.8 4.6 7.7 2.0 2.7 2 1 1 3 3 2 0 Helix-turn-helix domain HTH_29 PF13551.6 ABA80918.1 - 4.4e-09 36.2 1.5 1.3e-08 34.7 1.5 1.9 1 0 0 1 1 1 1 Winged helix-turn helix rve PF00665.26 ABA80918.1 - 2.3e-08 34.2 0.1 4.3e-08 33.4 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_32 PF13565.6 ABA80918.1 - 6.3e-08 33.1 1.2 6.3e-08 33.1 1.2 3.6 4 0 0 4 4 4 1 Homeodomain-like domain HTH_28 PF13518.6 ABA80918.1 - 1.5e-07 31.4 1.3 5.4e-06 26.4 0.7 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA80918.1 - 1.8e-07 30.7 2.2 8.4e-06 25.4 1.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_17 PF12728.7 ABA80918.1 - 0.011 15.9 0.2 1.6 9.0 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3663 PF12404.8 ABA80918.1 - 0.15 12.1 0.7 0.46 10.6 0.0 2.1 3 0 0 3 3 3 0 Peptidase HTH_Crp_2 PF13545.6 ABA80918.1 - 0.56 10.2 3.4 0.89 9.6 0.7 2.7 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Phage_integrase PF00589.22 ABA80919.1 - 2e-08 34.2 0.0 3.8e-07 30.0 0.0 2.4 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 ABA80919.1 - 0.00095 19.5 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 ABA80919.1 - 0.036 14.4 0.3 0.55 10.6 0.0 2.4 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain HemY_N PF07219.13 ABA80919.1 - 0.038 14.2 1.2 0.14 12.3 1.2 2.0 1 0 0 1 1 1 0 HemY protein N-terminus HECW1_helix PF18436.1 ABA80919.1 - 0.2 11.8 0.2 0.74 10.0 0.0 2.0 2 0 0 2 2 2 0 Helical box domain of E3 ubiquitin-protein ligase HECW1 TMEM210 PF15195.6 ABA80920.1 - 0.027 14.9 0.1 0.071 13.5 0.0 1.7 2 0 0 2 2 2 0 TMEM210 family MT-A70 PF05063.14 ABA80921.1 - 2e-11 44.1 0.0 2.5e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 MT-A70 TetR_N PF00440.23 ABA80922.1 - 6.1e-16 57.9 0.0 1.5e-15 56.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 ABA80922.1 - 3.2e-13 49.8 0.3 5.6e-13 49.0 0.3 1.4 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_11 PF16859.5 ABA80922.1 - 0.00018 21.8 2.5 0.00032 21.0 2.5 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain ACR_tran PF00873.19 ABA80923.1 - 0 1254.9 9.0 0 1254.7 9.0 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 ABA80923.1 - 1.7e-09 37.1 17.6 1.7e-09 37.1 17.6 2.8 3 0 0 3 3 3 1 MMPL family SecD_SecF PF02355.16 ABA80923.1 - 0.0016 17.9 16.2 0.0016 17.9 16.2 3.0 3 0 0 3 3 3 2 Protein export membrane protein Patched PF02460.18 ABA80923.1 - 0.02 13.0 14.1 0.032 12.3 14.1 1.3 1 0 0 1 1 1 0 Patched family Phage_r1t_holin PF16945.5 ABA80923.1 - 0.8 9.9 4.7 2.8 8.2 0.1 3.5 3 0 0 3 3 3 0 Putative lactococcus lactis phage r1t holin HlyD_D23 PF16576.5 ABA80924.1 - 1.4e-15 57.1 4.7 7.2e-15 54.8 4.7 1.9 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 ABA80924.1 - 2.6e-09 37.8 2.2 1.3e-06 29.1 0.1 3.1 3 1 0 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 ABA80924.1 - 3.1e-06 26.9 0.1 3.1e-06 26.9 0.1 2.6 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD PF00529.20 ABA80924.1 - 0.0047 16.8 12.1 0.023 14.6 12.1 2.4 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS OEP PF02321.18 ABA80924.1 - 0.014 15.2 9.7 0.024 14.4 9.7 1.3 1 0 0 1 1 1 0 Outer membrane efflux protein Biotin_lipoyl PF00364.22 ABA80924.1 - 0.11 12.4 0.1 0.77 9.6 0.0 2.2 2 0 0 2 2 2 0 Biotin-requiring enzyme Sigma54_activat PF00158.26 ABA80925.1 - 1e-27 96.9 0.0 2e-27 95.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 ABA80925.1 - 1e-09 38.0 0.5 3.2e-09 36.4 0.5 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family Sigma54_activ_2 PF14532.6 ABA80925.1 - 6.9e-09 35.9 0.0 1.7e-08 34.7 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain GAF PF01590.26 ABA80925.1 - 3.9e-08 34.0 0.1 1.6e-07 32.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain AAA_5 PF07728.14 ABA80925.1 - 7.6e-08 32.5 0.0 1.3e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MarR_2 PF12802.7 ABA80925.1 - 8.9e-05 22.3 0.8 0.00051 19.9 0.3 2.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 ABA80925.1 - 0.00013 21.7 0.2 0.00063 19.5 0.2 2.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 ABA80925.1 - 0.00017 21.3 0.2 0.00092 18.9 0.2 2.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 ABA80925.1 - 0.00018 21.2 0.5 0.00039 20.1 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 ABA80925.1 - 0.00024 21.0 0.2 0.0011 18.9 0.2 2.2 1 0 0 1 1 1 1 Winged helix-turn helix IclR PF01614.18 ABA80925.1 - 0.00031 20.6 0.4 0.001 18.9 0.1 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_1 PF00126.27 ABA80925.1 - 0.00032 20.6 1.1 0.0013 18.6 0.1 2.6 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 ABA80925.1 - 0.00034 20.7 0.4 0.0088 16.1 0.3 3.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.6 ABA80925.1 - 0.00097 18.9 1.2 0.0038 17.0 0.2 2.4 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Phage_NinH PF06322.11 ABA80925.1 - 0.0034 17.2 0.2 0.0084 16.0 0.2 1.6 1 0 0 1 1 1 1 Phage NinH protein HTH_17 PF12728.7 ABA80925.1 - 0.0047 17.1 0.0 0.013 15.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 ABA80925.1 - 0.023 14.2 0.2 1.3 8.6 0.3 2.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 ABA80925.1 - 0.026 13.9 0.2 0.073 12.5 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 RWP-RK PF02042.15 ABA80925.1 - 0.032 14.2 0.1 0.069 13.1 0.1 1.5 1 0 0 1 1 1 0 RWP-RK domain AAA_16 PF13191.6 ABA80925.1 - 0.039 14.3 0.4 0.15 12.4 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 ABA80925.1 - 0.043 13.2 0.6 1 8.7 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI HTH_24 PF13412.6 ABA80925.1 - 0.078 12.6 0.1 0.24 11.0 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 ABA80925.1 - 0.085 12.8 0.1 0.26 11.3 0.1 1.8 2 0 0 2 2 1 0 HTH domain AAA_30 PF13604.6 ABA80925.1 - 0.37 10.5 5.0 2.3 7.9 0.3 3.5 4 0 0 4 4 4 0 AAA domain Pyr_redox_3 PF13738.6 ABA80926.1 - 1.2e-22 80.6 0.0 1.4e-20 73.8 0.1 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.19 ABA80926.1 - 1.6e-21 76.4 0.0 3.6e-17 62.0 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like Pyr_redox_2 PF07992.14 ABA80926.1 - 1.1e-15 57.7 0.0 2.2e-11 43.5 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 ABA80926.1 - 4.2e-08 32.7 0.4 1.8e-06 27.4 0.0 2.8 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 ABA80926.1 - 0.00053 19.3 0.2 0.0019 17.5 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 ABA80926.1 - 0.00064 20.2 0.2 2 9.1 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA80926.1 - 0.00092 19.4 0.0 0.003 17.8 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 ABA80926.1 - 0.0058 16.9 0.2 6.7 7.0 0.0 2.8 3 0 0 3 3 3 2 TrkA-N domain NAD_binding_7 PF13241.6 ABA80926.1 - 0.0091 16.4 0.2 0.054 13.9 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding SnoaL_2 PF12680.7 ABA80926.1 - 0.014 16.0 0.4 0.014 16.0 0.4 2.5 3 0 0 3 3 3 0 SnoaL-like domain DAO PF01266.24 ABA80926.1 - 0.016 14.8 0.1 1.8 8.1 0.0 3.4 3 1 0 4 4 4 0 FAD dependent oxidoreductase IlvN PF07991.12 ABA80926.1 - 0.072 12.7 0.1 0.88 9.1 0.0 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_binding_2 PF00890.24 ABA80926.1 - 0.096 11.7 0.1 0.096 11.7 0.1 3.0 3 1 1 4 4 4 0 FAD binding domain Lycopene_cycl PF05834.12 ABA80926.1 - 0.1 11.6 0.0 13 4.7 0.0 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 ABA80926.1 - 0.16 11.9 1.8 12 5.9 0.0 3.5 4 0 0 4 4 4 0 FAD-NAD(P)-binding GerE PF00196.19 ABA80927.2 - 1.1e-07 31.2 0.2 2.8e-07 30.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 ABA80927.2 - 0.0015 19.0 0.0 0.0038 17.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 ABA80927.2 - 0.0015 18.3 0.2 0.0044 16.8 0.2 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 ABA80927.2 - 0.0082 16.0 0.3 0.02 14.8 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_30 PF13556.6 ABA80927.2 - 0.027 14.3 0.2 0.07 12.9 0.2 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 ABA80927.2 - 0.058 13.1 0.1 0.19 11.4 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 ABA80927.2 - 0.11 12.5 0.3 0.11 12.5 0.3 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain Polysacc_synt_3 PF13440.6 ABA80928.1 - 3.5e-77 259.5 1.7 3.5e-77 259.5 1.7 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 ABA80928.1 - 1.1e-38 133.2 8.6 1.1e-38 133.2 8.6 2.3 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein LMWPc PF01451.21 ABA80929.1 - 5.4e-34 117.6 0.0 6e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Rhomboid PF01694.22 ABA80930.1 - 9e-25 87.4 17.3 9e-25 87.4 17.3 1.9 2 0 0 2 2 2 1 Rhomboid family Porin_4 PF13609.6 ABA80931.1 - 2.6e-09 37.3 21.8 2.6e-08 34.0 11.5 2.2 1 1 1 2 2 2 2 Gram-negative porin OMP_b-brl PF13505.6 ABA80931.1 - 0.0094 16.1 18.9 0.48 10.5 2.0 2.8 1 1 1 2 2 2 2 Outer membrane protein beta-barrel domain EAR PF07897.11 ABA80931.1 - 0.92 9.2 3.4 1.9 8.2 0.4 2.7 2 0 0 2 2 2 0 Ethylene-responsive binding factor-associated repression DUF465 PF04325.13 ABA80932.1 - 1.4e-16 60.2 6.8 1.6e-16 60.1 6.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF465) HALZ PF02183.18 ABA80932.1 - 0.019 15.2 1.1 0.41 10.9 0.5 2.0 2 0 0 2 2 2 0 Homeobox associated leucine zipper Seryl_tRNA_N PF02403.22 ABA80932.1 - 0.02 15.1 0.4 0.02 15.1 0.4 1.0 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.11 ABA80932.1 - 0.041 14.3 0.5 5.5 7.5 0.1 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) GIT_CC PF16559.5 ABA80932.1 - 0.046 13.6 0.6 0.3 11.0 0.2 1.9 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DivIC PF04977.15 ABA80932.1 - 0.081 12.7 3.0 2.6 7.9 0.7 2.1 1 1 1 2 2 2 0 Septum formation initiator DUF5595 PF18077.1 ABA80932.1 - 0.081 13.0 2.5 0.71 10.0 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5595) DUF2306 PF10067.9 ABA80933.1 - 1.5e-13 51.2 6.9 2.5e-13 50.4 6.9 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2306) CitMHS PF03600.16 ABA80934.1 - 7.9e-39 133.6 46.2 2.8e-24 85.8 24.4 2.2 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.21 ABA80934.1 - 2e-23 82.0 3.9 3.1e-11 42.9 0.3 2.7 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 ABA80934.1 - 3.9e-13 49.3 38.3 3e-06 26.6 10.4 3.3 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region Cupin_2 PF07883.11 ABA80935.1 - 6.9e-08 32.1 0.0 1.1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.7 ABA80935.1 - 6.1e-05 22.8 0.1 6.9e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 ABA80935.1 - 0.00037 20.4 0.0 0.00048 20.0 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 ABA80935.1 - 0.00084 19.0 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 ABA80935.1 - 0.0028 17.3 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF5317 PF17248.2 ABA80935.1 - 0.25 11.4 0.0 0.31 11.0 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5317) LrgB PF04172.16 ABA80936.1 - 6.9e-70 234.9 20.0 7.9e-70 234.7 20.0 1.0 1 0 0 1 1 1 1 LrgB-like family LrgA PF03788.14 ABA80937.1 - 3.5e-24 84.6 6.7 5.1e-24 84.0 6.7 1.2 1 0 0 1 1 1 1 LrgA family Pox_I5 PF04713.12 ABA80937.1 - 6.2 7.0 9.5 2.3 8.3 0.5 3.0 3 0 0 3 3 3 0 Poxvirus protein I5 Asp_Glu_race PF01177.22 ABA80938.2 - 1.2e-10 41.7 0.3 2.4e-10 40.6 0.3 1.5 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 ABA80938.2 - 0.038 13.4 0.1 0.076 12.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase BPD_transp_1 PF00528.22 ABA80939.1 - 7.8e-13 48.6 16.1 7.8e-13 48.6 16.1 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4191 PF13829.6 ABA80939.1 - 1.1 8.6 6.6 8.2 5.7 0.4 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4191) BPD_transp_1 PF00528.22 ABA80940.1 - 1.6e-12 47.5 23.3 1.6e-12 47.5 23.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 ABA80941.1 - 2.3e-18 67.0 0.1 5.9e-18 65.7 0.0 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 ABA80941.1 - 3.2e-06 26.8 0.2 5.6e-06 26.0 0.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_6 PF13343.6 ABA80941.1 - 4e-06 26.4 0.0 8.5e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Voltage_CLC PF00654.20 ABA80941.1 - 0.047 12.9 0.1 0.069 12.4 0.1 1.2 1 0 0 1 1 1 0 Voltage gated chloride channel ABC_tran PF00005.27 ABA80942.1 - 2.7e-31 108.9 0.0 5.9e-31 107.8 0.0 1.5 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 ABA80942.1 - 1.6e-10 41.0 0.3 3.9e-10 39.7 0.1 1.8 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 ABA80942.1 - 1.1e-06 28.7 0.2 0.00038 20.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 ABA80942.1 - 0.00071 18.5 0.0 0.011 14.5 0.0 2.1 1 1 0 1 1 1 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 ABA80942.1 - 0.0027 18.1 0.2 0.0057 17.1 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 ABA80942.1 - 0.0098 15.8 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 ABA80942.1 - 0.012 15.8 0.1 0.035 14.4 0.1 1.8 1 0 0 1 1 1 0 TOBE domain AAA_28 PF13521.6 ABA80942.1 - 0.016 15.5 0.5 0.17 12.1 0.5 2.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 ABA80942.1 - 0.018 15.4 0.1 0.046 14.1 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 ABA80942.1 - 0.05 13.0 0.4 3.4 7.0 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA80942.1 - 0.11 12.7 0.4 0.4 11.0 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 ABA80942.1 - 0.14 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 ABA80942.1 - 0.16 11.8 0.2 0.29 11.0 0.2 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain FCD PF07729.12 ABA80943.1 - 6.7e-21 75.0 15.2 6.7e-21 75.0 15.2 1.9 2 1 0 2 2 2 1 FCD domain GntR PF00392.21 ABA80943.1 - 7e-16 57.6 0.6 7e-16 57.6 0.6 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 ABA80943.1 - 0.0051 16.8 0.2 0.012 15.6 0.2 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 ABA80943.1 - 0.0055 16.5 0.0 0.0085 15.9 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_41 PF14502.6 ABA80943.1 - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 ABA80944.1 - 5.4e-21 74.7 0.1 8.3e-21 74.1 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.6 ABA80944.1 - 0.024 14.8 0.0 0.036 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain EamA PF00892.20 ABA80945.1 - 1.4e-17 64.1 31.9 6.6e-14 52.3 13.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family Ferritin PF00210.24 ABA80946.1 - 4.8e-32 110.8 2.9 5.5e-32 110.7 2.9 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 ABA80946.1 - 3.5e-07 30.7 1.3 0.0026 18.2 0.3 2.0 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 ABA80946.1 - 0.069 13.4 0.4 0.25 11.5 0.2 1.9 2 0 0 2 2 2 0 Ferritin-like domain Glycos_transf_1 PF00534.20 ABA80947.1 - 7.7e-15 54.9 0.0 1.1e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA80947.1 - 1.6e-14 54.5 0.2 2.8e-14 53.7 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 ABA80947.1 - 8.8e-10 38.9 0.1 1.7e-09 37.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA80947.1 - 8.8e-08 32.3 2.9 8.7e-07 29.1 0.3 2.9 2 1 1 3 3 3 1 Glycosyltransferase Family 4 GGDEF PF00990.21 ABA80948.1 - 7.4e-33 113.6 0.0 1.4e-32 112.6 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 ABA80948.1 - 8.3e-09 35.7 2.8 0.00032 20.9 0.1 2.9 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 ABA80948.1 - 3.9e-08 33.1 4.8 8.5e-06 25.7 0.2 3.9 4 1 0 4 4 4 2 PAS domain GGDEF_2 PF17853.1 ABA80948.1 - 0.0011 19.2 0.4 0.0086 16.3 0.0 2.7 4 0 0 4 4 4 1 GGDEF-like domain PAS_9 PF13426.7 ABA80948.1 - 0.0083 16.4 0.0 1.9 8.8 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 ABA80948.1 - 0.036 14.2 0.7 4.7 7.4 0.0 3.9 3 1 0 3 3 3 0 PAS fold AI-2E_transport PF01594.16 ABA80949.2 - 5.1e-32 111.3 44.0 7.2e-32 110.8 44.0 1.1 1 0 0 1 1 1 1 AI-2E family transporter Met_synt_B12 PF02965.17 ABA80950.1 - 1.7e-118 395.1 0.0 2.5e-118 394.5 0.0 1.3 1 0 0 1 1 1 1 Vitamin B12 dependent methionine synthase, activation domain Pterin_bind PF00809.22 ABA80950.1 - 1.7e-57 194.9 0.3 6e-57 193.1 0.1 1.9 2 0 0 2 2 2 1 Pterin binding enzyme B12-binding_2 PF02607.17 ABA80950.1 - 1.3e-25 89.6 0.9 1.3e-25 89.6 0.9 2.6 2 0 0 2 2 2 1 B12 binding domain B12-binding PF02310.19 ABA80950.1 - 6.5e-18 64.9 1.4 1e-17 64.3 0.3 1.9 2 0 0 2 2 2 1 B12 binding domain CdhD PF03599.16 ABA80950.1 - 0.029 13.1 0.0 0.051 12.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit S-methyl_trans PF02574.16 ABA80951.1 - 1.1e-77 261.5 0.1 1.3e-77 261.3 0.1 1.0 1 0 0 1 1 1 1 Homocysteine S-methyltransferase FlaE PF07559.14 ABA80952.1 - 0.075 13.6 0.3 0.12 12.9 0.3 1.4 1 0 0 1 1 1 0 Flagellar basal body protein FlaE K_channel_TID PF07941.11 ABA80952.1 - 0.12 12.9 3.2 0.5 10.9 3.2 2.0 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain Phage_tube PF04985.14 ABA80957.1 - 1.8e-44 151.4 0.0 2e-44 151.2 0.0 1.0 1 0 0 1 1 1 1 Phage tail tube protein FII Phage_TAC_7 PF10109.9 ABA80958.1 - 9e-11 41.7 0.1 1.1e-10 41.5 0.1 1.1 1 0 0 1 1 1 1 Phage tail assembly chaperone proteins, E, or 41 or 14 YjeF_N PF03853.15 ABA80959.1 - 0.3 11.0 7.3 0.12 12.2 0.4 2.8 2 0 0 2 2 2 0 YjeF-related protein N-terminus PhageMin_Tail PF10145.9 ABA80959.1 - 6.5 6.6 15.5 0.077 12.8 6.6 2.4 2 1 0 2 2 2 0 Phage-related minor tail protein Phage_P2_GpU PF06995.11 ABA80960.2 - 4.8e-42 142.4 0.0 5.4e-42 142.2 0.0 1.0 1 0 0 1 1 1 1 Phage P2 GpU Phage_tail_X PF05489.12 ABA80961.1 - 3.4e-15 55.5 0.1 4.1e-15 55.2 0.1 1.1 1 0 0 1 1 1 1 Phage Tail Protein X Phage_GPD PF05954.11 ABA80962.1 - 6.7e-11 42.0 0.2 1.7e-10 40.7 0.2 1.5 1 1 0 1 1 1 1 Phage late control gene D protein (GPD) MethyltransfD12 PF02086.15 ABA80963.2 - 2.3e-21 76.6 0.0 2.8e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase HSDR_N_2 PF13588.6 ABA80964.1 - 8.4e-13 48.3 0.0 1.2e-11 44.6 0.0 2.6 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.14 ABA80964.1 - 5.9e-08 32.9 0.0 3.9e-05 23.7 0.0 2.6 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.6 ABA80964.1 - 0.0035 17.7 0.0 0.0078 16.6 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily ATPase PF06745.13 ABA80964.1 - 0.1 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 KaiC DUF2971 PF11185.8 ABA80965.1 - 2e-07 32.1 0.0 3.9e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2971) cobW PF02492.19 ABA80965.1 - 0.015 14.8 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain YbjN PF10722.9 ABA80966.1 - 3.3e-27 95.1 0.1 3.9e-27 94.8 0.1 1.1 1 0 0 1 1 1 1 Putative bacterial sensory transduction regulator P5CR_dimer PF14748.6 ABA80967.2 - 1.3e-31 108.9 1.9 1.3e-31 108.9 1.9 1.6 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 ABA80967.2 - 6.9e-08 33.0 0.0 2.2e-07 31.4 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent tRNA_bind PF01588.20 ABA80968.1 - 2.5e-14 53.1 0.0 2.9e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain 2-Hacid_dh_C PF02826.19 ABA80969.1 - 3.4e-53 179.7 0.1 4.9e-53 179.1 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA80969.1 - 6.6e-26 90.6 0.0 7.6e-26 90.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 ABA80969.1 - 4.2e-06 27.0 0.0 9.3e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 ABA80969.1 - 0.0079 16.5 0.1 0.017 15.5 0.1 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 ABA80969.1 - 0.019 15.5 6.4 0.034 14.7 3.8 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 ABA80969.1 - 0.021 14.1 1.1 0.021 14.1 1.1 2.1 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sulfotransfer_2 PF03567.14 ABA80970.1 - 7.2e-05 22.8 0.0 8.6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Sulfotransferase family GGDEF PF00990.21 ABA80971.1 - 7.1e-40 136.4 0.1 3.2e-39 134.3 0.0 1.9 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain HAMP PF00672.25 ABA80971.1 - 1.9e-07 31.4 0.3 1.9e-07 31.4 0.3 2.4 2 0 0 2 2 2 1 HAMP domain CHASE3 PF05227.13 ABA80971.1 - 5e-06 26.5 11.1 0.00022 21.1 0.1 4.1 3 1 1 4 4 4 2 CHASE3 domain YdjC PF04794.12 ABA80971.1 - 0.0025 17.8 0.0 0.0095 15.9 0.0 1.8 2 0 0 2 2 2 1 YdjC-like protein DNA_repr_REX1B PF14966.6 ABA80971.1 - 0.012 16.3 0.1 11 6.7 0.0 3.0 3 0 0 3 3 3 0 DNA repair REX1-B DUF3145 PF11343.8 ABA80971.1 - 0.037 13.6 0.1 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3145) NeA_P2 PF12312.8 ABA80971.1 - 0.068 12.6 0.3 0.15 11.5 0.3 1.5 1 1 0 1 1 1 0 Nepovirus subgroup A polyprotein PhoR PF11808.8 ABA80972.1 - 0.75 10.2 5.4 0.88 10.0 5.4 1.1 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR Amidase PF01425.21 ABA80973.1 - 2.4e-90 303.7 0.4 5.3e-89 299.2 0.4 2.1 1 1 0 1 1 1 1 Amidase DctM PF06808.12 ABA80974.1 - 2.1e-79 267.3 43.1 2.5e-79 267.0 43.1 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctQ PF04290.12 ABA80975.1 - 9.3e-23 80.6 4.5 1.5e-22 79.9 4.5 1.3 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctP PF03480.13 ABA80976.1 - 1.1e-36 126.7 0.0 1.4e-36 126.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 MacB_PCD PF12704.7 ABA80977.1 - 1.1e-40 140.1 8.4 1.1e-40 140.1 8.4 2.6 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 ABA80977.1 - 2.6e-12 47.1 3.3 2.6e-12 47.1 3.3 3.4 3 0 0 3 3 3 1 FtsX-like permease family LapA_dom PF06305.11 ABA80977.1 - 1.7 8.5 0.0 1.7 8.5 0.0 4.0 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain ABC_tran PF00005.27 ABA80978.2 - 1.5e-30 106.5 0.0 2e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80978.2 - 2.9e-08 33.9 0.1 0.00028 20.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA80978.2 - 6.4e-06 25.8 0.0 0.024 14.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA80978.2 - 0.00031 20.4 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA80978.2 - 0.0045 17.4 0.4 0.011 16.2 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA80978.2 - 0.008 16.5 0.4 0.12 12.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 ABA80978.2 - 0.012 16.0 0.0 1.3 9.4 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 ABA80978.2 - 0.015 15.5 0.4 3.3 7.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA80978.2 - 0.024 14.5 0.0 0.07 13.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 ABA80978.2 - 0.03 14.0 0.6 0.18 11.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 ABA80978.2 - 0.034 13.7 0.3 0.093 12.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA80978.2 - 0.068 13.7 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 ABA80978.2 - 0.073 12.8 0.0 0.71 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 ABA80978.2 - 0.1 12.3 0.2 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA80978.2 - 0.16 11.9 0.0 0.53 10.2 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain HlyD_D23 PF16576.5 ABA80979.1 - 2.5e-17 62.8 5.8 5.2e-17 61.8 5.8 1.5 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 ABA80979.1 - 1.4e-14 54.6 2.8 7e-13 49.2 0.1 3.1 2 1 0 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 ABA80979.1 - 3.9e-11 42.6 1.8 6.8e-11 41.8 0.2 2.2 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD PF00529.20 ABA80979.1 - 4.9e-05 23.1 2.2 9.2e-05 22.2 0.9 2.0 2 0 0 2 2 2 1 HlyD membrane-fusion protein of T1SS DUF4131 PF13567.6 ABA80979.1 - 0.0007 19.3 0.3 0.0043 16.7 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4131) Biotin_lipoyl PF00364.22 ABA80979.1 - 0.0074 16.1 0.2 0.023 14.5 0.1 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme OEP PF02321.18 ABA80979.1 - 6 6.6 12.9 9.4 6.0 12.9 1.2 1 0 0 1 1 1 0 Outer membrane efflux protein DHquinase_II PF01220.19 ABA80980.1 - 9e-61 203.6 0.2 1e-60 203.4 0.2 1.0 1 0 0 1 1 1 1 Dehydroquinase class II GPI PF06560.11 ABA80980.1 - 0.096 11.9 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) GST_N_3 PF13417.6 ABA80981.1 - 1.4e-06 28.6 0.0 2.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 ABA80981.1 - 2.6e-05 24.4 0.0 4.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_4 PF14834.6 ABA80981.1 - 0.0015 18.9 0.1 0.035 14.5 0.1 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain Inhibitor_I68 PF10468.9 ABA80981.1 - 0.0021 18.4 0.0 0.0041 17.5 0.0 1.4 1 0 0 1 1 1 1 Carboxypeptidase inhibitor I68 GST_C_2 PF13410.6 ABA80981.1 - 0.0062 16.5 0.5 0.02 14.9 0.5 1.9 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain PRIMA1 PF16101.5 ABA80981.1 - 0.033 14.2 0.2 0.067 13.2 0.2 1.5 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 GST_N PF02798.20 ABA80981.1 - 0.036 14.4 0.0 0.064 13.6 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain HTH_8 PF02954.19 ABA80982.1 - 0.038 13.8 0.8 0.16 11.8 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.16 ABA80982.1 - 0.039 13.5 0.0 0.085 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 ABA80982.1 - 0.065 13.1 1.9 0.1 12.4 0.6 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_AraC PF00165.23 ABA80982.1 - 0.071 13.2 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_17 PF12728.7 ABA80982.1 - 0.075 13.2 0.1 0.22 11.7 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 ABA80982.1 - 0.095 12.6 8.5 0.037 13.9 4.2 2.5 3 1 0 3 3 3 0 MarR family HTH_28 PF13518.6 ABA80982.1 - 0.26 11.4 3.7 0.41 10.8 0.1 2.8 3 1 0 3 3 3 0 Helix-turn-helix domain RES PF08808.11 ABA80983.1 - 3.2e-18 66.1 2.5 4e-18 65.8 2.5 1.1 1 0 0 1 1 1 1 RES domain DUF1236 PF06823.12 ABA80984.1 - 9.4e-19 67.1 8.2 9.4e-19 67.1 8.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1236) SH3_3 PF08239.11 ABA80984.1 - 3.3e-13 49.7 0.0 6.5e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial SH3 domain SH3_4 PF06347.13 ABA80984.1 - 8.9e-07 28.6 0.1 2.3e-06 27.3 0.1 1.7 1 0 0 1 1 1 1 Bacterial SH3 domain ADH_zinc_N_2 PF13602.6 ABA80985.1 - 6.4e-25 88.7 0.0 1.2e-24 87.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 ABA80985.1 - 1.1e-24 86.8 0.0 1.7e-24 86.3 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 ABA80985.1 - 2.4e-08 33.8 0.0 4.1e-08 33.1 0.0 1.5 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain CMD PF02627.20 ABA80986.1 - 1.5e-20 73.1 0.7 2.2e-20 72.5 0.1 1.6 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family DehI PF10778.9 ABA80986.1 - 0.0024 18.0 0.1 0.0034 17.5 0.1 1.5 1 1 0 1 1 1 1 Halocarboxylic acid dehydrogenase DehI Cyclase PF04199.13 ABA80987.1 - 3.6e-33 114.7 0.2 4.6e-33 114.4 0.2 1.1 1 0 0 1 1 1 1 Putative cyclase TAT_signal PF10518.9 ABA80987.1 - 0.00035 20.3 7.7 0.00035 20.3 7.7 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF2076 PF09849.9 ABA80987.1 - 0.00059 20.0 0.4 0.00085 19.5 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2076) MR_MLE_C PF13378.6 ABA80988.1 - 4.4e-40 137.6 0.0 6.2e-40 137.1 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 ABA80988.1 - 0.00039 20.6 0.0 0.00069 19.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LysR_substrate PF03466.20 ABA80989.1 - 5.1e-44 150.1 6.0 7.3e-44 149.6 6.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA80989.1 - 4.5e-19 68.1 3.4 5.2e-19 68.0 1.5 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA80989.1 - 1.5e-05 24.7 1.8 0.0003 20.5 0.3 2.6 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.6 ABA80989.1 - 0.00045 20.0 1.3 0.00045 20.0 1.3 2.4 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 ABA80989.1 - 0.00052 19.4 0.1 0.0016 17.8 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 ABA80989.1 - 0.00084 18.9 0.3 0.0028 17.2 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 ABA80989.1 - 0.038 13.8 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 ABA80989.1 - 0.057 13.5 0.8 0.32 11.1 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 ABA80989.1 - 0.085 12.8 0.2 0.085 12.8 0.2 2.3 3 0 0 3 3 3 0 MarR family TctC PF03401.14 ABA80990.1 - 4.3e-43 147.3 0.1 5e-43 147.1 0.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Maf PF02545.14 ABA80990.1 - 0.057 13.3 0.1 3.6 7.4 0.0 2.2 2 0 0 2 2 2 0 Maf-like protein TctA PF01970.16 ABA80991.1 - 4.6e-128 427.4 45.5 4.6e-128 427.4 45.5 2.5 2 1 0 2 2 2 1 Tripartite tricarboxylate transporter TctA family TctB PF07331.11 ABA80991.1 - 1.9e-10 41.1 20.4 1.9e-10 41.1 20.4 5.6 2 2 3 5 5 5 1 Tripartite tricarboxylate transporter TctB family Iso_dh PF00180.20 ABA80992.1 - 4.3e-85 285.9 0.0 5.1e-85 285.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Iso_dh PF00180.20 ABA80993.1 - 4e-87 292.6 0.0 4.4e-87 292.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase ABC_tran PF00005.27 ABA80994.1 - 5.9e-34 117.5 0.0 7.4e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA80994.1 - 2.1e-10 40.9 0.2 2e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA80994.1 - 0.00023 20.8 0.0 0.00048 19.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA80994.1 - 0.00039 20.2 0.9 0.0025 17.5 0.9 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 ABA80994.1 - 0.0006 19.3 0.0 0.014 14.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 ABA80994.1 - 0.0015 18.0 0.0 0.0025 17.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 ABA80994.1 - 0.0016 18.8 2.5 0.003 18.0 2.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 ABA80994.1 - 0.0053 16.5 0.0 0.056 13.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 ABA80994.1 - 0.0056 17.2 0.0 0.008 16.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA80994.1 - 0.009 16.3 0.4 0.064 13.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 ABA80994.1 - 0.011 15.7 0.2 0.071 13.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 ABA80994.1 - 0.014 15.8 0.0 0.15 12.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 ABA80994.1 - 0.023 14.6 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 ABA80994.1 - 0.026 14.9 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA80994.1 - 0.037 14.2 0.1 0.092 12.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 ABA80994.1 - 0.085 13.1 0.1 0.18 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 ABA80994.1 - 0.13 11.9 0.0 1.9 8.2 0.0 2.1 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SbcCD_C PF13558.6 ABA80994.1 - 0.15 12.3 0.0 2.8 8.2 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FecCD PF01032.18 ABA80995.1 - 7.6e-84 281.4 42.9 9.3e-84 281.1 42.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 ABA80995.1 - 8.6e-06 25.4 21.7 1.9e-05 24.3 21.7 1.7 1 1 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.18 ABA80996.1 - 4.2e-41 141.1 0.0 5.4e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein BPD_transp_1 PF00528.22 ABA80997.1 - 7.9e-17 61.6 20.6 7.9e-17 61.6 20.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA80998.1 - 1.4e-11 44.5 22.6 1.3e-10 41.3 22.5 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA80999.1 - 2.6e-36 125.2 0.0 4.7e-36 124.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA80999.1 - 4e-10 39.7 1.3 8e-10 38.8 0.5 1.9 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 ABA80999.1 - 1.1e-06 28.8 0.1 0.0028 17.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 ABA80999.1 - 0.0013 19.1 0.1 0.0069 16.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA80999.1 - 0.002 18.4 0.5 0.0082 16.4 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA80999.1 - 0.0023 18.4 0.1 0.0039 17.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 ABA80999.1 - 0.007 15.8 0.1 0.05 13.0 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 ABA80999.1 - 0.013 15.4 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 ABA80999.1 - 0.032 13.6 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 ABA80999.1 - 0.035 14.0 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 ABA80999.1 - 0.066 13.5 0.0 0.15 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 ABA80999.1 - 0.067 12.9 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA80999.1 - 0.23 11.9 0.0 0.38 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain SBP_bac_6 PF13343.6 ABA81000.1 - 1.1e-34 119.9 0.1 1.5e-34 119.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA81000.1 - 1.5e-33 116.9 1.3 1.9e-33 116.5 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA81000.1 - 4.9e-18 66.1 1.8 6.8e-18 65.7 1.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA81000.1 - 6.9e-16 58.7 2.9 1.1e-15 58.0 2.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein RraA-like PF03737.15 ABA81001.1 - 9.1e-28 97.3 0.2 1.2e-27 97.0 0.2 1.1 1 0 0 1 1 1 1 Aldolase/RraA Glyco_transf_20 PF00982.21 ABA81001.1 - 0.036 12.7 0.0 0.052 12.2 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 20 CN_hydrolase PF00795.22 ABA81002.1 - 5.7e-58 196.3 0.0 6.4e-58 196.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase TruB_C PF09142.11 ABA81002.1 - 0.066 13.0 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal LysR_substrate PF03466.20 ABA81003.1 - 2.5e-34 118.5 4.7 3.4e-34 118.1 4.7 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81003.1 - 3.1e-20 71.9 1.5 1.8e-19 69.4 0.4 2.4 2 1 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_50 PF18024.1 ABA81003.1 - 0.0037 16.9 0.1 0.0073 15.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 ABA81003.1 - 0.065 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 ABA81003.1 - 0.079 13.0 0.1 0.26 11.4 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HisKA_7TM PF16927.5 ABA81004.2 - 1.5e-37 129.8 22.9 1.9e-37 129.5 22.9 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase GGDEF PF00990.21 ABA81004.2 - 5.9e-35 120.4 0.0 8.5e-35 119.9 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GCH_III PF05165.12 ABA81004.2 - 0.018 14.4 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase III EAL PF00563.20 ABA81006.2 - 4.6e-61 206.4 0.3 9.3e-61 205.4 0.3 1.6 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 ABA81006.2 - 9.7e-38 129.4 0.0 2e-37 128.4 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS PF00989.25 ABA81006.2 - 1.1e-16 60.9 0.1 1.8e-10 40.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 ABA81006.2 - 1.7e-16 60.4 3.4 2.2e-12 47.2 0.2 3.7 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 ABA81006.2 - 2.1e-16 60.0 0.0 3.5e-12 46.5 0.0 2.8 2 1 0 2 2 2 2 PAS domain GAF PF01590.26 ABA81006.2 - 5.8e-11 43.1 2.1 3.6e-10 40.6 0.2 2.9 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 ABA81006.2 - 4.1e-09 36.3 0.3 0.00047 20.1 0.0 3.8 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 ABA81006.2 - 1.1e-08 35.4 6.3 1.6e-06 28.5 0.4 3.6 3 0 0 3 3 3 2 GAF domain PAS_7 PF12860.7 ABA81006.2 - 7.2e-05 22.9 0.0 0.025 14.8 0.0 3.4 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.12 ABA81006.2 - 0.0022 18.2 0.0 0.07 13.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_12 PF18095.1 ABA81006.2 - 0.079 12.6 0.0 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain DUF218 PF02698.17 ABA81007.2 - 1.2e-27 96.5 0.6 1.5e-27 96.2 0.0 1.4 2 0 0 2 2 2 1 DUF218 domain DUF4131 PF13567.6 ABA81007.2 - 0.15 11.7 2.2 0.24 11.0 2.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SBD_N PF07005.11 ABA81008.2 - 1.4e-18 67.5 4.5 1.6e-18 67.3 1.0 2.1 1 1 1 2 2 2 1 Sugar-binding N-terminal domain NBD_C PF17042.5 ABA81008.2 - 1e-15 58.7 1.3 7.3e-14 52.6 0.4 3.0 2 1 1 3 3 3 1 Nucleotide-binding C-terminal domain GntR PF00392.21 ABA81009.1 - 4.3e-21 74.3 0.0 3e-20 71.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 ABA81009.1 - 6.1e-21 75.1 9.5 6.1e-21 75.1 9.5 1.6 2 0 0 2 2 2 1 FCD domain Rrf2 PF02082.20 ABA81009.1 - 2e-05 24.8 0.0 6.4e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_24 PF13412.6 ABA81009.1 - 0.00059 19.3 0.1 0.0012 18.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 ABA81009.1 - 0.00066 19.6 0.0 0.0018 18.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 ABA81009.1 - 0.00092 19.0 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PaaX PF07848.12 ABA81009.1 - 0.0011 19.1 0.0 0.003 17.7 0.0 1.7 1 0 0 1 1 1 1 PaaX-like protein HTH_Crp_2 PF13545.6 ABA81009.1 - 0.0021 18.0 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 ABA81009.1 - 0.0029 17.6 0.0 0.0069 16.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 ABA81009.1 - 0.0056 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 ABA81009.1 - 0.0097 15.8 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 ABA81009.1 - 0.0099 16.1 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_CodY PF08222.11 ABA81009.1 - 0.025 14.2 0.0 0.063 12.8 0.0 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain TFIIE_alpha PF02002.17 ABA81009.1 - 0.036 13.9 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_41 PF14502.6 ABA81009.1 - 0.086 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4570 PF15134.6 ABA81009.1 - 0.14 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4570) HTH_8 PF02954.19 ABA81009.1 - 0.18 11.6 1.3 0.37 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family PdxA PF04166.12 ABA81010.1 - 5.3e-99 331.2 0.1 6.1e-99 331.0 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA 2-Hacid_dh_C PF02826.19 ABA81011.1 - 1.4e-50 171.1 0.0 3.3e-50 169.9 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA81011.1 - 2e-26 92.3 0.0 2.4e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 ABA81011.1 - 0.0002 21.6 0.0 0.00034 20.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 ABA81011.1 - 0.0023 18.0 0.0 0.0039 17.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 ABA81011.1 - 0.021 15.3 0.0 0.041 14.4 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 ABA81011.1 - 0.058 14.0 0.0 0.16 12.5 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent CBP PF12192.8 ABA81011.1 - 0.08 13.1 1.1 0.5 10.6 0.2 2.4 2 0 0 2 2 2 0 Fungal calcium binding protein IlvN PF07991.12 ABA81011.1 - 0.11 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DHDPS PF00701.22 ABA81012.1 - 5e-55 186.3 0.0 5.4e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family TctA PF01970.16 ABA81013.1 - 8.7e-141 469.3 48.8 1e-140 469.1 48.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family GPI2 PF06432.11 ABA81013.1 - 0.046 13.2 0.2 0.046 13.2 0.2 2.0 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase TctC PF03401.14 ABA81014.1 - 8.7e-50 169.3 0.0 1.1e-49 169.0 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor TctB PF07331.11 ABA81015.1 - 1.8e-17 63.9 20.8 2.1e-17 63.7 20.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF1656 PF07869.12 ABA81015.1 - 0.0076 16.2 4.7 0.0076 16.2 4.7 3.7 3 1 1 4 4 4 2 Protein of unknown function (DUF1656) Mit_proteolip PF08039.11 ABA81015.1 - 0.11 13.0 0.1 16 6.0 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial proteolipid Herpes_US9 PF06072.11 ABA81015.1 - 0.23 11.4 1.1 1 9.3 0.2 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 DUF4131 PF13567.6 ABA81015.1 - 2 8.0 22.3 0.36 10.5 5.5 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Fe-ADH PF00465.19 ABA81016.2 - 7.3e-91 304.7 7.6 8.4e-91 304.5 7.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 ABA81016.2 - 8.9e-11 42.0 0.5 8.7e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase ABC_tran PF00005.27 ABA81017.1 - 1.4e-31 109.8 0.0 1.9e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81017.1 - 9.1e-11 42.1 0.4 1.2e-05 25.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81017.1 - 5.2e-06 26.1 0.0 0.044 13.2 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA81017.1 - 7.5e-06 26.4 0.7 1.6e-05 25.3 0.7 1.5 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 ABA81017.1 - 7.4e-05 21.7 0.2 0.006 15.4 0.0 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 ABA81017.1 - 0.00021 20.7 0.0 0.0098 15.3 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 ABA81017.1 - 0.00028 20.7 0.0 0.00062 19.6 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 ABA81017.1 - 0.00037 20.2 0.0 0.00073 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA81017.1 - 0.0081 16.7 0.0 0.012 16.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 ABA81017.1 - 0.0089 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Adeno_IVa2 PF02456.15 ABA81017.1 - 0.014 14.2 0.0 0.032 13.0 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 ABA81017.1 - 0.015 15.2 0.3 0.36 10.7 0.4 2.7 2 1 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 ABA81017.1 - 0.028 14.7 0.1 0.3 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 ABA81017.1 - 0.048 13.9 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 ABA81017.1 - 0.057 13.5 0.0 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA81017.1 - 0.064 13.2 0.1 0.15 12.0 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain DUF2813 PF11398.8 ABA81017.1 - 0.072 12.3 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) MMR_HSR1 PF01926.23 ABA81017.1 - 0.091 12.8 0.0 0.24 11.5 0.0 1.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase FecCD PF01032.18 ABA81018.1 - 1.4e-71 241.1 32.4 1.7e-71 240.8 32.4 1.1 1 0 0 1 1 1 1 FecCD transport family DUF5345 PF17280.2 ABA81018.1 - 0.098 12.6 1.3 4.9 7.2 0.1 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5345) FecCD PF01032.18 ABA81019.1 - 8e-81 271.4 37.7 9.9e-81 271.1 37.7 1.0 1 0 0 1 1 1 1 FecCD transport family DUF521 PF04412.13 ABA81019.1 - 1 8.0 4.0 1.4 7.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Peripla_BP_2 PF01497.18 ABA81020.1 - 3.2e-30 105.4 0.0 3.9e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TraW_N PF12477.8 ABA81020.1 - 0.42 10.6 4.4 1.5 8.8 4.4 2.0 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal TonB_dep_Rec PF00593.24 ABA81021.1 - 4.1e-55 188.5 25.7 4.1e-55 188.5 25.7 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 ABA81021.1 - 2.4e-16 60.3 0.3 5.4e-16 59.1 0.3 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 ABA81021.1 - 0.00033 19.8 0.0 0.0011 18.0 0.0 1.8 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family CMD PF02627.20 ABA81023.1 - 8.4e-20 70.6 0.1 1.3e-17 63.6 0.1 2.1 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family PA26 PF04636.13 ABA81023.1 - 0.0059 15.6 0.0 0.0078 15.2 0.0 1.1 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) MCPsignal PF00015.21 ABA81024.1 - 2.2e-31 109.0 11.0 2.2e-31 109.0 11.0 2.6 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin-6_N PF09177.11 ABA81024.1 - 0.058 14.0 5.9 3.6 8.2 0.1 3.5 3 2 0 3 3 3 0 Syntaxin 6, N-terminal HAMP PF00672.25 ABA81024.1 - 0.23 11.9 2.7 0.58 10.6 0.0 3.3 4 0 0 4 4 4 0 HAMP domain Exo_endo_phos PF03372.23 ABA81027.1 - 2.1e-22 79.8 2.2 2.6e-22 79.5 2.2 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 ABA81027.1 - 0.16 11.8 0.0 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 Endonuclease-reverse transcriptase adh_short_C2 PF13561.6 ABA81028.2 - 1.8e-12 47.3 0.0 2.3e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81028.2 - 4.7e-11 42.5 1.0 2.3e-09 37.0 0.0 2.1 1 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 ABA81028.2 - 0.014 15.3 1.9 0.048 13.6 0.0 2.1 1 1 1 2 2 2 0 KR domain RmlD_sub_bind PF04321.17 ABA81028.2 - 0.054 12.6 0.0 0.094 11.8 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain DUF1190 PF06693.11 ABA81029.1 - 5.8e-38 130.8 2.4 6.7e-38 130.6 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1190) GSP_synth PF03738.14 ABA81030.1 - 2.7e-144 481.0 0.0 3e-144 480.9 0.0 1.0 1 0 0 1 1 1 1 Glutathionylspermidine synthase preATP-grasp An_peroxidase PF03098.15 ABA81031.1 - 1.6e-18 66.6 0.0 4e-15 55.4 0.0 2.1 2 0 0 2 2 2 2 Animal haem peroxidase Peptidase_C1 PF00112.23 ABA81032.1 - 0.16 12.0 0.3 0.29 11.2 0.3 1.5 1 1 0 1 1 1 0 Papain family cysteine protease Peptidase_C14 PF00656.22 ABA81033.1 - 5.7e-21 75.6 0.0 8.8e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Caspase domain Lipase_GDSL_2 PF13472.6 ABA81033.1 - 2.5e-08 34.5 1.5 4.5e-08 33.7 0.2 2.1 2 1 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family TadZ_N PF16968.5 ABA81033.1 - 0.12 12.1 0.1 22 4.8 0.0 2.6 2 0 0 2 2 2 0 Pilus assembly protein TadZ N-terminal Methyltransf_31 PF13847.6 ABA81033.1 - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Response_reg PF00072.24 ABA81034.2 - 6.5e-24 84.3 0.0 1e-23 83.6 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA81034.2 - 9.2e-23 80.1 0.3 2.7e-22 78.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 ABA81034.2 - 0.00065 20.0 0.0 0.00092 19.6 0.0 1.3 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ HTH_32 PF13565.6 ABA81034.2 - 0.2 12.3 1.3 0.59 10.8 0.2 2.2 1 1 1 2 2 2 0 Homeodomain-like domain HATPase_c PF02518.26 ABA81035.1 - 4.6e-14 52.9 0.0 7.7e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA81035.1 - 1.7e-12 47.2 0.5 6.4e-12 45.3 0.5 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain 2CSK_N PF08521.10 ABA81035.1 - 1.8e-11 44.3 0.4 1.8e-11 44.3 0.4 1.8 2 0 0 2 2 2 1 Two-component sensor kinase N-terminal HAMP PF00672.25 ABA81035.1 - 0.00043 20.6 4.1 0.0011 19.3 0.3 3.5 3 0 0 3 3 3 1 HAMP domain HATPase_c_2 PF13581.6 ABA81035.1 - 0.0022 18.0 0.0 0.0058 16.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 ABA81035.1 - 0.029 14.2 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MCPsignal PF00015.21 ABA81036.1 - 7e-32 110.6 26.2 1.1e-25 90.5 13.0 3.5 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 ABA81036.1 - 3e-09 36.7 0.1 3e-09 36.7 0.1 2.7 3 0 0 3 3 3 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 ABA81036.1 - 3.5e-06 27.3 1.4 3.5e-06 27.3 1.4 3.9 4 1 0 4 4 4 1 HAMP domain CENP-H PF05837.12 ABA81036.1 - 1.1 9.7 7.5 5.4 7.5 0.2 3.8 2 1 1 3 3 3 0 Centromere protein H (CENP-H) DUF948 PF06103.11 ABA81036.1 - 3.1 8.1 13.7 1.1 9.5 0.1 4.4 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 ABA81036.1 - 5.6 7.7 13.1 2.1 9.1 0.2 3.8 3 1 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) Sigma70_r4 PF04545.16 ABA81036.1 - 8.2 6.0 9.5 6.5 6.4 0.1 3.7 4 0 0 4 4 4 0 Sigma-70, region 4 NikR_C PF08753.11 ABA81037.1 - 1.1e-14 54.3 0.1 2.3e-14 53.3 0.1 1.5 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 ABA81037.1 - 3.8e-09 36.1 1.0 3.8e-09 36.1 1.0 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Csd3_N PF18059.1 ABA81037.1 - 0.043 14.3 0.0 0.81 10.2 0.0 2.1 2 0 0 2 2 2 0 Csd3 N-terminal DUF4781 PF16013.5 ABA81038.1 - 0.018 13.9 1.4 0.021 13.6 1.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF5549 PF17703.1 ABA81038.1 - 0.53 9.9 5.3 0.73 9.5 5.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5549) DUF3140 PF11338.8 ABA81039.1 - 6.4e-37 125.9 0.3 7.4e-37 125.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3140) LysR_substrate PF03466.20 ABA81040.1 - 8.4e-38 129.8 4.1 8.4e-38 129.8 4.1 1.6 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81040.1 - 2.9e-20 71.9 0.8 6.2e-20 70.9 0.8 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 ABA81040.1 - 0.00014 21.9 0.1 0.00051 20.1 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 ABA81040.1 - 0.00015 21.5 0.1 0.00042 20.0 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain DUF1254 PF06863.12 ABA81040.1 - 0.0023 18.0 0.1 0.0045 17.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) HTH_20 PF12840.7 ABA81040.1 - 0.0029 17.6 0.1 0.011 15.8 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 ABA81040.1 - 0.0049 16.4 0.2 0.0099 15.4 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 ABA81040.1 - 0.0052 16.6 1.5 0.011 15.6 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_8 PF02954.19 ABA81040.1 - 0.0087 15.8 0.1 0.018 14.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_IclR PF09339.10 ABA81040.1 - 0.057 13.2 1.1 1.4 8.7 0.1 2.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Aminotran_1_2 PF00155.21 ABA81041.1 - 4.3e-34 118.3 0.0 5.2e-34 118.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 ABA81041.1 - 0.0035 16.3 0.0 0.0054 15.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 ABA81041.1 - 0.0076 15.6 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Ribonuc_L-PSP PF01042.21 ABA81042.1 - 4.8e-13 49.2 0.0 6e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 ABA81042.1 - 4.6e-11 43.1 0.0 5.4e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Aminotran_1_2 PF00155.21 ABA81043.1 - 1.9e-74 251.0 0.0 2.2e-74 250.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 ABA81043.1 - 3.9e-08 33.0 0.0 5.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 ABA81043.1 - 0.073 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 ABA81043.1 - 0.13 11.1 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V adh_short_C2 PF13561.6 ABA81044.1 - 8.9e-47 159.6 0.6 1.2e-46 159.2 0.6 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81044.1 - 5.1e-37 127.2 0.0 6.2e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81044.1 - 7e-06 26.1 0.5 1.1e-05 25.4 0.1 1.5 2 0 0 2 2 2 1 KR domain 3HCDH_N PF02737.18 ABA81044.1 - 0.017 15.0 2.6 0.023 14.6 1.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 ABA81044.1 - 0.032 14.3 0.4 0.06 13.4 0.4 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CbiA PF01656.23 ABA81044.1 - 0.12 12.5 0.0 0.26 11.3 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RraA-like PF03737.15 ABA81045.1 - 6.6e-29 101.0 1.0 8.9e-29 100.6 1.0 1.1 1 0 0 1 1 1 1 Aldolase/RraA 2-Hacid_dh_C PF02826.19 ABA81046.1 - 4e-45 153.3 0.0 5.3e-45 153.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 ABA81046.1 - 2e-05 24.8 0.0 3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 ABA81046.1 - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 ABA81046.1 - 0.03 14.3 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 ABA81046.1 - 0.039 14.5 0.1 0.1 13.2 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.9 ABA81046.1 - 0.041 13.7 0.0 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 Rossmann-like domain ApbA PF02558.16 ABA81046.1 - 0.053 13.2 0.1 0.085 12.5 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 ABA81046.1 - 0.16 11.8 0.1 0.24 11.2 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FmdA_AmdA PF03069.15 ABA81047.1 - 1.4e-28 99.9 0.0 5.3e-14 51.9 0.0 2.8 1 1 1 2 2 2 2 Acetamidase/Formamidase family Peptidase_M24 PF00557.24 ABA81048.1 - 3.2e-35 121.7 0.1 4.1e-35 121.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 ABA81048.1 - 6.9e-22 78.5 0.0 1.5e-21 77.5 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain GntR PF00392.21 ABA81049.1 - 7.3e-17 60.8 1.7 1.3e-16 59.9 1.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 ABA81049.1 - 3.3e-14 53.4 13.1 5.1e-14 52.8 13.1 1.3 1 0 0 1 1 1 1 FCD domain HTH_24 PF13412.6 ABA81049.1 - 2e-05 24.1 0.3 4.3e-05 23.0 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 ABA81049.1 - 5.3e-05 23.1 1.6 5.3e-05 23.1 1.6 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain RepL PF05732.11 ABA81049.1 - 0.003 17.0 0.0 0.0052 16.2 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) FaeA PF04703.12 ABA81049.1 - 0.018 15.4 0.0 0.05 14.0 0.0 1.8 1 0 0 1 1 1 0 FaeA-like protein HTH_11 PF08279.12 ABA81049.1 - 0.031 14.2 0.2 0.076 13.0 0.2 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 ABA81049.1 - 0.065 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 ABA81049.1 - 0.066 13.0 0.3 0.16 11.8 0.3 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Peptidase_M20 PF01546.28 ABA81050.1 - 5.7e-25 88.2 0.2 8.7e-25 87.6 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 ABA81050.1 - 2.2e-06 27.5 0.1 5.1e-06 26.3 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 2-Hacid_dh_C PF02826.19 ABA81051.1 - 2.8e-46 157.1 0.0 4.2e-46 156.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 ABA81051.1 - 1.5e-24 86.2 0.0 1.7e-24 86.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FCD PF07729.12 ABA81052.1 - 2.8e-17 63.3 5.2 2.8e-17 63.3 5.2 1.8 1 1 1 2 2 2 1 FCD domain GntR PF00392.21 ABA81052.1 - 3.8e-15 55.3 0.0 8.6e-15 54.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 ABA81052.1 - 0.00076 19.0 0.0 0.0023 17.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 ABA81052.1 - 0.0066 16.3 1.1 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 ABA81052.1 - 0.015 15.3 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain YcaO_C PF18381.1 ABA81052.1 - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 YcaO cyclodehydratase C-terminal domain CT_A_B PF02626.15 ABA81053.1 - 2.2e-83 279.9 0.5 2.8e-83 279.6 0.5 1.1 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CT_C_D PF02682.16 ABA81054.2 - 6.5e-67 225.2 0.0 7.7e-67 224.9 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D DctM PF06808.12 ABA81055.1 - 9.4e-72 242.1 45.4 1.1e-71 241.9 45.4 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctQ PF04290.12 ABA81056.2 - 1.5e-25 89.7 8.8 2.2e-25 89.1 8.8 1.3 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctP PF03480.13 ABA81057.1 - 2e-40 138.9 0.0 2.4e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 LamB_YcsF PF03746.16 ABA81058.1 - 2.3e-94 315.6 0.0 2.6e-94 315.4 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family Ku PF02735.16 ABA81058.1 - 0.18 11.5 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Ku70/Ku80 beta-barrel domain Aminotran_4 PF01063.19 ABA81059.1 - 2.4e-41 142.1 0.0 2.8e-41 141.8 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DHDPS PF00701.22 ABA81060.1 - 4.8e-24 84.6 0.0 5.3e-24 84.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family TPR_4 PF07721.14 ABA81060.1 - 0.048 14.3 0.5 0.16 12.7 0.5 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat SBP_bac_3 PF00497.20 ABA81061.1 - 2.6e-44 151.3 0.0 3e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 ABA81061.1 - 8e-07 29.3 0.0 2.8e-06 27.5 0.0 1.9 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site ABC_tran PF00005.27 ABA81062.1 - 5.7e-35 120.8 0.0 7.3e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81062.1 - 3.1e-08 33.8 0.0 8.1e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81062.1 - 7.9e-08 32.0 0.2 1.4e-06 27.9 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA81062.1 - 4.9e-06 27.0 0.0 7.2e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA81062.1 - 0.00032 20.4 0.0 0.00063 19.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA81062.1 - 0.0032 17.2 0.0 0.0054 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA81062.1 - 0.008 16.5 0.1 0.014 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 ABA81062.1 - 0.0085 14.9 0.2 1.3 7.7 0.1 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_33 PF13671.6 ABA81062.1 - 0.0085 16.3 0.0 0.013 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA81062.1 - 0.027 14.4 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 ABA81062.1 - 0.036 13.5 0.0 0.06 12.7 0.0 1.4 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 ABA81062.1 - 0.042 14.1 0.1 1.1 9.5 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BCA_ABC_TP_C PF12399.8 ABA81062.1 - 0.091 12.7 0.2 0.18 11.7 0.2 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_19 PF13245.6 ABA81062.1 - 0.094 13.0 0.1 0.15 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA81062.1 - 0.1 13.1 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 ABA81062.1 - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea BPD_transp_1 PF00528.22 ABA81063.1 - 5.1e-15 55.7 17.0 5.1e-15 55.7 17.0 1.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA81064.1 - 1.1e-24 87.2 11.9 1.5e-24 86.7 11.9 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component CN_hydrolase PF00795.22 ABA81065.1 - 3.2e-45 154.5 0.0 3.6e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase AP_endonuc_2 PF01261.24 ABA81065.1 - 0.0036 16.8 0.1 1.4 8.3 0.0 2.6 3 0 0 3 3 3 2 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 ABA81066.1 - 4.3e-21 75.6 0.0 6.9e-21 74.9 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 ABA81066.1 - 1.2e-15 58.0 0.1 6.5e-07 29.2 0.0 3.0 3 0 0 3 3 3 2 Amidohydrolase family LysR_substrate PF03466.20 ABA81068.1 - 3.6e-33 114.7 5.5 4.8e-33 114.3 5.5 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81068.1 - 1.4e-17 63.4 2.0 3e-17 62.3 1.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 ABA81068.1 - 0.016 15.0 0.3 0.066 13.0 0.3 2.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 ABA81068.1 - 0.04 13.8 0.0 0.096 12.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 ABA81068.1 - 0.069 13.3 0.1 5 7.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 ABA81068.1 - 0.069 13.0 1.8 0.38 10.7 0.1 2.9 3 0 0 3 3 3 0 MarR family Flavin_Reduct PF01613.18 ABA81069.1 - 5.1e-16 59.1 0.0 6.7e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Putative_PNPOx PF01243.20 ABA81069.1 - 0.028 14.6 0.0 0.049 13.8 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase PUB_1 PF18486.1 ABA81069.1 - 0.038 13.9 0.3 0.23 11.3 0.1 2.3 2 1 0 2 2 2 0 PNGase/UBA- or UBX-containing domain DUF447 PF04289.12 ABA81069.1 - 0.2 11.4 0.5 0.92 9.3 0.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF447) HEAT_2 PF13646.6 ABA81070.1 - 0.00015 22.1 10.3 0.0095 16.3 0.7 3.4 2 1 1 3 3 3 3 HEAT repeats DUF2169 PF09937.9 ABA81071.1 - 4.2e-86 289.1 1.8 4.8e-86 288.9 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2169) DUF4150 PF13665.6 ABA81073.1 - 7.5e-34 116.1 0.5 1.5e-33 115.2 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4150) CAP_N PF01213.19 ABA81073.1 - 4.8 6.6 5.3 11 5.3 1.2 2.1 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal AAA_2 PF07724.14 ABA81077.1 - 1.5e-38 132.6 0.0 4.9e-38 130.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 ABA81077.1 - 2.2e-28 98.2 0.2 5.7e-28 96.9 0.2 1.7 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 ABA81077.1 - 1e-19 71.2 0.0 4.6e-09 36.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA81077.1 - 2.5e-13 50.2 0.1 1.4e-09 38.1 0.0 3.3 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA81077.1 - 3.5e-10 40.3 1.0 0.0042 17.4 0.0 4.8 3 1 1 4 4 4 2 AAA domain ClpB_D2-small PF10431.9 ABA81077.1 - 4.2e-10 39.5 0.3 1.2e-09 38.0 0.3 1.8 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_16 PF13191.6 ABA81077.1 - 1.2e-08 35.6 23.2 1.1e-05 25.9 0.0 6.5 3 3 0 6 6 5 2 AAA ATPase domain Sigma54_activat PF00158.26 ABA81077.1 - 1.3e-07 31.5 0.0 1.8e-05 24.5 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 ABA81077.1 - 3.1e-06 26.9 0.4 0.013 15.0 0.1 3.2 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 ABA81077.1 - 6.3e-06 25.8 0.0 0.029 13.9 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region Clp_N PF02861.20 ABA81077.1 - 5.4e-05 23.2 1.6 0.00045 20.3 0.7 2.9 2 0 0 2 2 2 1 Clp amino terminal domain, pathogenicity island component IstB_IS21 PF01695.17 ABA81077.1 - 7.9e-05 22.5 0.0 0.13 12.0 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein NACHT PF05729.12 ABA81077.1 - 9.8e-05 22.3 0.0 0.016 15.2 0.0 2.8 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 ABA81077.1 - 0.00016 22.2 0.4 0.15 12.6 0.1 3.0 3 0 0 3 3 2 1 AAA domain ResIII PF04851.15 ABA81077.1 - 0.0011 19.0 0.0 1.3 9.0 0.0 3.2 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit RuvB_N PF05496.12 ABA81077.1 - 0.0012 18.6 0.6 0.27 11.0 0.0 3.7 4 0 0 4 4 4 1 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 ABA81077.1 - 0.0012 18.8 0.0 0.94 9.3 0.0 3.4 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea TIP49 PF06068.13 ABA81077.1 - 0.0017 17.6 0.5 0.37 10.0 0.1 2.9 3 0 0 3 3 3 1 TIP49 P-loop domain RNA_helicase PF00910.22 ABA81077.1 - 0.0028 18.0 0.0 2.2 8.7 0.0 3.0 3 0 0 3 3 3 1 RNA helicase TniB PF05621.11 ABA81077.1 - 0.0032 16.9 0.0 2.2 7.6 0.0 3.2 3 0 0 3 3 3 1 Bacterial TniB protein TsaE PF02367.17 ABA81077.1 - 0.0077 16.2 0.0 2.9 7.9 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 ABA81077.1 - 0.0095 15.2 1.4 0.24 10.6 0.0 3.3 3 1 1 4 4 3 1 Zeta toxin Hpr_kinase_C PF07475.12 ABA81077.1 - 0.0096 15.5 0.1 0.086 12.4 0.0 2.2 2 0 0 2 2 2 1 HPr Serine kinase C-terminal domain NTPase_1 PF03266.15 ABA81077.1 - 0.016 15.1 0.0 3.6 7.5 0.0 2.7 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 ABA81077.1 - 0.02 14.6 0.0 8.1 6.3 0.0 2.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_33 PF13671.6 ABA81077.1 - 0.024 14.8 4.7 0.19 11.9 0.0 3.8 3 1 0 4 4 4 0 AAA domain RsgA_GTPase PF03193.16 ABA81077.1 - 0.028 14.3 0.0 8.4 6.3 0.0 2.6 3 0 0 3 3 2 0 RsgA GTPase Rad17 PF03215.15 ABA81077.1 - 0.035 14.0 0.0 0.64 9.9 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain SRP54 PF00448.22 ABA81077.1 - 0.037 13.7 0.0 0.96 9.0 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 ABA81077.1 - 0.044 13.8 0.0 3.8 7.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 ABA81077.1 - 0.054 13.6 0.7 7.3 6.7 0.1 2.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 ABA81077.1 - 0.065 13.6 0.7 9.8 6.5 0.1 3.0 2 1 0 2 2 2 0 AAA domain DUF815 PF05673.13 ABA81077.1 - 0.075 12.2 0.0 5.2 6.2 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 ABA81077.1 - 0.1 12.3 0.0 3.3 7.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 ABA81077.1 - 0.19 10.9 0.3 18 4.4 0.0 2.2 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_6 PF12774.7 ABA81077.1 - 0.2 10.6 0.2 1.4 7.8 0.0 2.1 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Pkinase PF00069.25 ABA81078.1 - 4.6e-33 114.7 0.0 6.2e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 ABA81078.1 - 1.2e-21 77.2 0.0 1.5e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 ABA81078.1 - 9.1e-06 25.8 0.2 9.1e-06 25.8 0.2 3.8 2 2 1 3 3 3 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 ABA81078.1 - 0.00071 18.5 0.0 0.001 18.0 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 ABA81078.1 - 0.002 17.5 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 ABA81078.1 - 0.011 15.3 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 RIO1 family ImpA_N PF06812.12 ABA81079.1 - 7e-32 110.0 3.0 2.8e-31 108.1 0.5 2.3 2 0 0 2 2 2 1 ImpA, N-terminal, type VI secretion system T6SS_VipA PF05591.12 ABA81080.1 - 2.6e-51 173.5 0.0 3e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion system, VipA, VC_A0107 or Hcp2 VipB PF05943.12 ABA81081.1 - 3e-174 579.8 0.0 3.4e-174 579.6 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion protein, EvpB/VC_A0108, tail sheath DUF1281 PF06924.11 ABA81081.1 - 0.053 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) TssC PF17541.2 ABA81081.1 - 0.075 11.8 0.2 0.14 11.0 0.2 1.3 1 0 0 1 1 1 0 Type VI secretion system, TssC, VipB T6SS_HCP PF05638.12 ABA81082.1 - 1.7e-32 112.5 0.0 2e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 Type VI secretion system effector, Hcp GPW_gp25 PF04965.14 ABA81083.1 - 3e-27 94.2 0.2 5e-27 93.5 0.2 1.4 1 0 0 1 1 1 1 Gene 25-like lysozyme T6SS_TssF PF05947.12 ABA81084.1 - 5e-167 557.1 1.2 5.7e-167 556.9 1.2 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssF T6SS_TssG PF06996.11 ABA81085.1 - 3.9e-63 213.5 3.5 5.3e-63 213.0 3.5 1.1 1 0 0 1 1 1 1 Type VI secretion, TssG FHA PF00498.26 ABA81086.2 - 3.8e-12 46.4 0.0 5.4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 ABA81086.2 - 1.1e-06 28.8 0.0 2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain T6SS-SciN PF12790.7 ABA81087.1 - 1.6e-22 79.4 0.0 1.9e-22 79.2 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 LPAM_1 PF08139.12 ABA81087.1 - 0.21 12.1 1.5 0.56 10.8 1.5 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site T6SS_VasE PF05936.12 ABA81088.1 - 5.2e-109 364.8 0.1 5.9e-109 364.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 ABA81089.2 - 8.8e-47 159.5 0.7 1.3e-46 158.9 0.7 1.3 1 0 0 1 1 1 1 Type VI secretion system protein DotU OmpA PF00691.20 ABA81089.2 - 1.6e-14 54.0 0.1 2.7e-14 53.3 0.1 1.3 1 0 0 1 1 1 1 OmpA family DUF5337 PF17272.2 ABA81089.2 - 0.017 14.9 0.8 0.054 13.3 0.8 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5337) ImcF-related_N PF14331.6 ABA81090.1 - 7.8e-87 290.9 0.3 1.3e-86 290.1 0.3 1.4 1 0 0 1 1 1 1 ImcF-related N-terminal domain IcmF-related PF06761.12 ABA81090.1 - 1.2e-52 179.3 0.0 2.3e-52 178.4 0.0 1.5 1 0 0 1 1 1 1 Intracellular multiplication and human macrophage-killing IcmF_C PF06744.12 ABA81090.1 - 2.3e-52 177.6 0.0 3.5e-52 177.0 0.0 1.3 1 0 0 1 1 1 1 Type VI secretion protein IcmF C-terminal AAA_16 PF13191.6 ABA81090.1 - 0.037 14.4 1.4 0.43 10.9 0.1 3.4 2 1 1 3 3 3 0 AAA ATPase domain AAA PF00004.29 ABA81090.1 - 0.077 13.4 0.4 0.15 12.4 0.4 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA81090.1 - 0.13 12.5 0.0 0.33 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain TagF_N PF09867.9 ABA81091.2 - 5.4e-16 58.8 0.2 5.4e-09 36.2 0.1 2.2 2 0 0 2 2 2 2 TagF N-terminal domain, Type VI secretion system-associated Phage_GPD PF05954.11 ABA81092.1 - 1.1e-93 313.9 0.1 2e-93 313.0 0.0 1.5 2 0 0 2 2 2 1 Phage late control gene D protein (GPD) Gp5_C PF06715.12 ABA81092.1 - 1.6e-16 59.1 36.9 0.0035 17.4 1.7 8.5 8 0 0 8 8 8 8 Gp5 C-terminal repeat (3 copies) IcmF-related PF06761.12 ABA81093.1 - 2.9e-38 132.1 11.4 2.9e-38 132.1 11.4 1.6 2 0 0 2 2 2 1 Intracellular multiplication and human macrophage-killing IcmF_C PF06744.12 ABA81093.1 - 2.2e-31 109.1 0.0 4.5e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 Type VI secretion protein IcmF C-terminal HTH_32 PF13565.6 ABA81093.1 - 0.12 13.0 6.2 6.3 7.5 0.1 4.4 3 0 0 3 3 3 0 Homeodomain-like domain Peptidase_M15_4 PF13539.6 ABA81094.1 - 2.1e-12 47.4 0.3 3.5e-12 46.6 0.3 1.4 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase SlyX PF04102.12 ABA81094.1 - 0.037 14.6 0.1 0.11 13.1 0.0 1.8 2 0 0 2 2 2 0 SlyX TolA_bind_tri PF16331.5 ABA81094.1 - 0.069 13.2 0.2 0.15 12.2 0.2 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation DUF1192 PF06698.11 ABA81094.1 - 0.12 12.4 1.3 0.6 10.2 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) KfrA_N PF11740.8 ABA81094.1 - 0.14 12.8 3.6 0.25 12.0 2.4 2.0 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term PP2C_2 PF13672.6 ABA81095.1 - 5.4e-16 58.9 3.4 7.7e-16 58.4 3.4 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 ABA81095.1 - 8.5e-11 42.0 0.0 3.3e-10 40.1 0.0 1.8 2 0 0 2 2 2 1 Protein phosphatase 2C SpoIIE PF07228.12 ABA81095.1 - 2.7e-06 27.4 6.2 2.2e-05 24.5 6.2 2.0 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) OmpA PF00691.20 ABA81096.1 - 3.5e-17 62.6 0.0 5.2e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 OmpA family Glyco_tranf_2_3 PF13641.6 ABA81097.1 - 0.081 12.8 0.1 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_trans_1_4 PF13692.6 ABA81099.2 - 1.4e-06 28.8 0.0 3.3e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA81099.2 - 0.0005 20.1 4.3 0.0018 18.3 2.5 2.5 1 1 1 3 3 3 2 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 ABA81099.2 - 0.0017 17.9 0.0 0.63 9.6 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferases group 1 Sel1 PF08238.12 ABA81100.1 - 1.7e-42 142.9 38.8 2e-06 28.3 0.6 10.1 10 0 0 10 10 10 8 Sel1 repeat Peptidase_C14 PF00656.22 ABA81100.1 - 8e-25 88.2 0.0 1.1e-24 87.8 0.0 1.2 1 0 0 1 1 1 1 Caspase domain TPR_16 PF13432.6 ABA81100.1 - 8.2e-05 23.2 4.0 8.2e-05 23.2 4.0 9.5 6 2 2 9 9 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 ABA81100.1 - 0.00043 20.5 0.4 0.00043 20.5 0.4 6.3 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_2 PF07719.17 ABA81100.1 - 0.0047 17.0 1.3 0.0047 17.0 1.3 7.3 9 0 0 9 9 8 1 Tetratricopeptide repeat TPR_10 PF13374.6 ABA81100.1 - 0.011 15.6 1.1 0.011 15.6 1.1 6.2 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_7 PF13176.6 ABA81100.1 - 0.015 15.3 17.4 10 6.4 0.4 8.1 7 2 1 8 8 7 0 Tetratricopeptide repeat TPR_8 PF13181.6 ABA81100.1 - 0.015 15.4 2.9 0.066 13.5 0.1 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_17 PF13431.6 ABA81100.1 - 0.02 15.2 0.0 1.5 9.3 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 ABA81100.1 - 0.021 15.6 0.1 0.021 15.6 0.1 12.2 8 2 5 13 13 11 0 Tetratricopeptide repeat TPR_19 PF14559.6 ABA81100.1 - 0.021 15.3 0.3 0.021 15.3 0.3 7.8 8 1 1 9 9 8 0 Tetratricopeptide repeat ANAPC3 PF12895.7 ABA81100.1 - 0.029 14.6 0.1 0.12 12.6 0.1 2.1 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 PG_binding_3 PF09374.10 ABA81100.1 - 0.037 14.3 0.1 0.11 12.7 0.1 1.8 1 0 0 1 1 1 0 Predicted Peptidoglycan domain PG_binding_1 PF01471.18 ABA81100.1 - 0.05 13.8 0.1 0.36 11.1 0.0 2.4 3 0 0 3 3 3 0 Putative peptidoglycan binding domain ChAPs PF09295.10 ABA81100.1 - 0.23 10.4 0.0 0.34 9.9 0.0 1.1 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_1 PF00515.28 ABA81100.1 - 6.5 6.7 11.2 0.83 9.6 0.1 5.1 7 0 0 7 7 7 0 Tetratricopeptide repeat MarR_2 PF12802.7 ABA81100.1 - 7.7 6.5 7.8 3.1 7.7 0.5 3.6 4 0 0 4 4 4 0 MarR family Glyco_tran_28_C PF04101.16 ABA81102.1 - 0.099 12.6 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 ABA81102.1 - 0.11 11.7 0.1 4.2 6.5 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family 1 Aldolase_II PF00596.21 ABA81103.1 - 2.3e-24 86.4 0.0 9.8e-24 84.3 0.0 1.9 2 0 0 2 2 2 1 Class II Aldolase and Adducin N-terminal domain Peripla_BP_4 PF13407.6 ABA81104.1 - 1.3e-52 178.9 1.3 1.7e-52 178.6 1.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Glyco_tran_WecB PF03808.13 ABA81104.1 - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family BPD_transp_2 PF02653.16 ABA81105.1 - 1.4e-46 158.8 45.4 1.8e-46 158.5 45.4 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA81106.1 - 2.9e-38 131.6 40.2 2.9e-38 131.6 40.2 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 ABA81107.1 - 2.5e-49 167.3 0.0 5.8e-26 91.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA81107.1 - 2.8e-12 47.1 3.1 0.0057 16.5 0.2 3.3 3 1 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA81107.1 - 0.00049 20.0 0.1 0.23 11.4 0.1 2.7 3 0 0 3 3 3 1 RsgA GTPase AAA_29 PF13555.6 ABA81107.1 - 0.0019 17.9 0.4 0.0065 16.2 0.1 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 ABA81107.1 - 0.0076 16.0 4.8 0.012 15.3 0.6 3.0 3 1 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 ABA81107.1 - 0.011 15.0 0.7 4.2 6.6 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.6 ABA81107.1 - 0.026 14.8 3.2 5 7.4 0.2 3.8 2 2 0 2 2 2 0 AAA domain MukB PF04310.12 ABA81107.1 - 0.079 12.8 0.0 0.61 9.9 0.1 2.2 2 0 0 2 2 2 0 MukB N-terminal TsaE PF02367.17 ABA81107.1 - 0.088 12.8 1.0 14 5.7 0.1 2.7 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 ABA81107.1 - 0.13 12.6 0.0 2.5 8.4 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 ABA81107.1 - 0.26 11.7 0.0 0.43 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 ABA81107.1 - 0.39 11.0 1.8 0.64 10.3 0.2 2.3 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 ABA81107.1 - 2.2 8.8 4.1 48 4.5 0.2 3.2 3 0 0 3 3 3 0 AAA domain Sugar-bind PF04198.13 ABA81108.1 - 5.3e-61 206.0 0.0 7.4e-61 205.5 0.0 1.2 1 0 0 1 1 1 1 Putative sugar-binding domain Sigma70_r4 PF04545.16 ABA81108.1 - 9.2e-06 25.1 0.0 2.3e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 ABA81108.1 - 0.0013 18.6 0.1 0.0055 16.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 ABA81108.1 - 0.0021 18.0 0.1 0.0061 16.5 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_37 PF13744.6 ABA81108.1 - 0.0033 17.4 0.0 0.009 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 ABA81108.1 - 0.0073 15.8 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.7 ABA81108.1 - 0.013 15.7 0.2 0.5 10.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_23 PF13384.6 ABA81108.1 - 0.02 14.7 0.1 0.046 13.5 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 ABA81108.1 - 0.045 13.7 0.1 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 MarR family FGGY_N PF00370.21 ABA81109.1 - 3.2e-43 148.1 0.0 4.6e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 ABA81109.1 - 8.3e-18 64.8 0.6 2e-17 63.6 0.6 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain ABM PF03992.16 ABA81110.1 - 3e-20 72.1 0.0 3.5e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase FmdA_AmdA PF03069.15 ABA81111.1 - 8.4e-64 215.7 0.4 1.2e-62 211.9 0.4 1.9 1 1 0 1 1 1 1 Acetamidase/Formamidase family zinc_ribbon_4 PF13717.6 ABA81111.1 - 0.029 14.3 0.2 3.3 7.7 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain FAD_binding_5 PF00941.21 ABA81111.1 - 0.048 13.4 0.5 0.094 12.4 0.5 1.4 1 0 0 1 1 1 0 FAD binding domain in molybdopterin dehydrogenase HemolysinCabind PF00353.19 ABA81112.1 - 1.1e-38 130.8 90.2 3.6e-11 42.8 12.9 5.1 1 1 2 5 5 5 5 RTX calcium-binding nonapeptide repeat (4 copies) Peptidase_M10_C PF08548.11 ABA81112.1 - 0.49 10.3 19.1 70 3.2 19.1 3.7 1 1 0 1 1 1 0 Peptidase M10 serralysin C terminal PepSY PF03413.19 ABA81113.1 - 2.7e-06 27.8 0.8 3.5e-06 27.5 0.3 1.4 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain PepSY_2 PF13670.6 ABA81113.1 - 0.00033 20.6 0.1 0.0004 20.3 0.1 1.4 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain NOA36 PF06524.12 ABA81113.1 - 0.21 10.9 3.6 0.23 10.7 3.6 1.1 1 0 0 1 1 1 0 NOA36 protein Cwf_Cwc_15 PF04889.12 ABA81113.1 - 0.65 9.7 6.3 0.66 9.7 6.3 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Response_reg PF00072.24 ABA81114.1 - 7.9e-25 87.2 0.0 1.1e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 ABA81114.1 - 4.4e-17 61.9 0.0 7.6e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 ABA81115.1 - 1.4e-09 38.4 0.0 2.8e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA81115.1 - 0.00016 21.6 0.2 0.00034 20.5 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 ABA81115.1 - 0.0084 16.1 0.7 0.028 14.5 0.6 2.1 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 ABA81115.1 - 0.01 15.8 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 0 GHKL domain GGDEF PF00990.21 ABA81116.2 - 2.6e-37 128.1 0.0 3.4e-37 127.7 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GAF PF01590.26 ABA81116.2 - 6.2e-15 56.0 0.0 1.8e-14 54.5 0.0 1.7 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 ABA81116.2 - 2.9e-09 37.3 0.1 1.4e-08 35.2 0.0 2.1 1 1 1 2 2 2 1 GAF domain GAF_3 PF13492.6 ABA81116.2 - 3.1e-05 24.3 0.0 6e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain GGDEF_2 PF17853.1 ABA81116.2 - 0.0098 16.1 0.2 0.018 15.3 0.2 1.5 1 0 0 1 1 1 1 GGDEF-like domain HTH_18 PF12833.7 ABA81117.1 - 6e-23 80.9 1.9 1.5e-22 79.7 1.9 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA81117.1 - 1.3e-13 50.6 0.0 1e-06 28.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DJ-1_PfpI PF01965.24 ABA81117.1 - 4.9e-11 42.7 0.0 7.1e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_Tnp_ISL3 PF13542.6 ABA81117.1 - 0.0012 18.2 0.0 0.011 15.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 GATase_3 PF07685.14 ABA81117.1 - 0.13 11.9 0.0 0.46 10.0 0.1 1.8 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Sigma70_r3 PF04539.16 ABA81117.1 - 0.13 12.4 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 region 3 SBP_bac_8 PF13416.6 ABA81118.1 - 9.4e-27 94.5 0.1 1.3e-26 94.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA81118.1 - 1.2e-21 77.3 0.0 1.5e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA81118.1 - 1.3e-12 48.4 3.9 2.6e-12 47.3 3.9 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 ABA81118.1 - 1.9e-10 40.9 1.4 2.6e-10 40.4 1.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 ABA81119.1 - 5e-36 124.2 0.0 7.1e-36 123.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81119.1 - 3.1e-07 30.5 0.2 0.0024 17.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 ABA81119.1 - 6.3e-07 29.5 0.1 1.4e-06 28.4 0.1 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 ABA81119.1 - 8.4e-06 25.4 0.1 0.0049 16.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA81119.1 - 6.7e-05 23.3 0.2 0.00012 22.6 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 ABA81119.1 - 0.00083 19.0 0.8 0.0093 15.6 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA81119.1 - 0.0028 17.9 1.3 0.013 15.8 1.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA81119.1 - 0.0042 16.8 0.1 0.0083 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 ABA81119.1 - 0.0044 17.5 0.4 0.015 15.8 0.4 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 ABA81119.1 - 0.0075 16.2 0.1 0.017 15.0 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 ABA81119.1 - 0.011 15.6 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 ABA81119.1 - 0.02 14.9 0.1 0.14 12.1 0.0 2.3 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 ABA81119.1 - 0.03 14.6 0.2 0.24 11.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 ABA81119.1 - 0.032 14.0 0.1 0.071 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 ABA81119.1 - 0.047 13.6 0.1 0.083 12.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 ABA81119.1 - 0.047 13.1 0.2 3 7.2 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein T2SSE PF00437.20 ABA81119.1 - 0.052 12.6 0.1 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.22 ABA81119.1 - 0.059 12.5 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain FeoB_N PF02421.18 ABA81119.1 - 0.077 12.5 0.2 8.9 5.8 0.0 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_23 PF13476.6 ABA81119.1 - 0.083 13.4 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 ABA81119.1 - 0.088 11.6 0.3 1.4 7.6 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 ABA81119.1 - 0.095 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 ABA81119.1 - 0.1 12.8 0.1 0.19 11.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 ABA81119.1 - 0.11 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea 3-alpha PF03475.14 ABA81119.1 - 0.12 12.3 0.4 0.3 11.0 0.4 1.7 1 0 0 1 1 1 0 3-alpha domain AAA_14 PF13173.6 ABA81119.1 - 0.12 12.4 0.0 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 ABA81119.1 - 0.16 11.7 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 ABA81119.1 - 0.18 11.8 0.1 0.32 11.0 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 ABA81119.1 - 0.18 11.4 0.1 0.43 10.2 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 ABA81119.1 - 0.27 10.9 0.1 0.6 9.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 ABA81120.1 - 5.4e-08 32.8 33.7 1.9e-06 27.8 33.7 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA81121.1 - 9.7e-12 45.0 16.2 9.7e-12 45.0 16.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ycf4 PF02392.16 ABA81121.1 - 0.8 9.2 4.8 12 5.4 0.5 2.7 2 1 1 3 3 3 0 Ycf4 Pro_racemase PF05544.11 ABA81122.1 - 1.2e-88 297.3 0.0 1.3e-88 297.2 0.0 1.0 1 0 0 1 1 1 1 Proline racemase PhzC-PhzF PF02567.16 ABA81122.1 - 6.9e-05 22.4 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 ABA81122.1 - 0.00025 21.2 0.0 0.00073 19.7 0.0 1.7 2 0 0 2 2 2 1 Diaminopimelate epimerase ABC_tran PF00005.27 ABA81123.1 - 5.3e-50 169.5 0.0 1.1e-27 97.2 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 ABA81123.1 - 2.1e-12 47.4 0.0 1.9e-05 25.1 0.0 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA81123.1 - 2.4e-11 44.0 0.5 0.023 14.5 0.0 4.1 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81123.1 - 7.3e-10 38.7 0.4 0.00021 20.8 0.3 3.5 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81123.1 - 3.5e-07 29.9 0.9 0.0026 17.5 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81123.1 - 1.6e-06 28.6 1.1 0.00079 19.8 0.3 2.5 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 ABA81123.1 - 4e-05 23.6 1.9 0.083 12.8 0.1 2.7 3 0 0 3 3 3 2 RsgA GTPase AAA_25 PF13481.6 ABA81123.1 - 0.00016 21.3 7.7 0.27 10.8 0.9 3.9 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.6 ABA81123.1 - 0.0015 18.8 6.7 0.41 10.9 0.9 4.0 2 2 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 ABA81123.1 - 0.0033 17.5 1.5 0.67 10.1 0.1 2.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 ABA81123.1 - 0.0071 16.5 0.0 2.4 8.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 ABA81123.1 - 0.011 14.8 2.2 2.1 7.3 0.2 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 ABA81123.1 - 0.023 14.6 0.1 5.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase Sigma54_activat PF00158.26 ABA81123.1 - 0.023 14.4 0.3 1.9 8.2 0.0 3.0 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_23 PF13476.6 ABA81123.1 - 0.024 15.2 0.4 2.5 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 ABA81123.1 - 0.045 14.2 0.4 8.3 6.8 0.3 3.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 ABA81123.1 - 0.05 13.0 0.9 2.3 7.5 0.1 2.6 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 ABA81123.1 - 0.079 13.5 0.3 5.1 7.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 ABA81123.1 - 0.08 12.7 0.9 6.6 6.4 0.1 2.4 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 ABA81123.1 - 0.086 12.9 0.5 3.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TniB PF05621.11 ABA81123.1 - 0.11 11.9 2.8 5 6.5 0.0 3.6 4 0 0 4 4 4 0 Bacterial TniB protein PRK PF00485.18 ABA81123.1 - 0.15 11.8 0.9 8.1 6.1 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 ABA81123.1 - 0.16 11.8 2.4 0.52 10.2 0.1 2.3 2 0 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 ABA81123.1 - 0.21 11.1 0.7 9.3 5.7 0.0 2.9 3 0 0 3 3 3 0 P-loop containing dynein motor region NB-ARC PF00931.22 ABA81123.1 - 0.22 10.7 4.1 5.7 6.1 0.1 3.0 3 0 0 3 3 3 0 NB-ARC domain AAA_5 PF07728.14 ABA81123.1 - 0.29 11.1 6.1 2.6 8.0 0.7 3.9 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 ABA81123.1 - 0.29 10.8 3.6 3.7 7.2 0.0 3.2 3 1 0 3 3 3 0 IstB-like ATP binding protein ABC_ATPase PF09818.9 ABA81123.1 - 0.79 8.4 3.5 1.1 8.0 0.2 2.8 3 1 0 3 3 3 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 ABA81124.1 - 1.1e-26 93.7 16.3 1.1e-26 93.7 16.3 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA81124.1 - 4.4e-05 23.4 0.5 4.4e-05 23.4 0.5 3.9 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 ABA81125.1 - 2.8e-33 115.2 12.7 2.8e-33 115.2 12.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 ABA81126.1 - 5.4e-69 233.0 0.0 6.7e-69 232.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 ABA81126.1 - 1.6 8.7 6.8 3.3 7.7 6.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.22 ABA81127.1 - 6.8e-70 235.9 0.2 8.6e-70 235.6 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle FAD-SLDH PF12318.8 ABA81127.1 - 0.13 12.3 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase Amidase PF01425.21 ABA81128.2 - 8.8e-91 305.1 0.0 1.8e-90 304.1 0.0 1.5 1 1 0 1 1 1 1 Amidase DUF1476 PF07345.11 ABA81128.2 - 0.2 12.0 0.6 0.4 11.1 0.6 1.4 1 0 0 1 1 1 0 ATPase inhibitor subunit zeta Hist_deacetyl PF00850.19 ABA81129.1 - 4.2e-61 207.1 0.0 5.2e-61 206.8 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain TetR_C_6 PF13977.6 ABA81130.1 - 1.1e-20 74.0 5.3 1.1e-20 74.0 5.3 1.7 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 ABA81130.1 - 1.4e-10 40.7 0.3 3e-10 39.7 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 ABA81130.1 - 0.0019 18.4 4.6 0.0019 18.4 4.6 2.3 2 1 1 3 3 3 1 Tetracyclin repressor-like, C-terminal domain CT_C_D PF02682.16 ABA81130.1 - 0.072 12.8 0.0 0.13 12.0 0.0 1.4 1 1 0 1 1 1 0 Carboxyltransferase domain, subdomain C and D Phage_antitermQ PF06530.12 ABA81130.1 - 0.16 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Phage antitermination protein Q TetR_C_11 PF16859.5 ABA81130.1 - 1.7 9.0 10.2 0.11 12.8 2.3 2.5 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Amidohydro_2 PF04909.14 ABA81131.1 - 1.6e-32 113.5 2.0 1.9e-32 113.2 2.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Amino_oxidase PF01593.24 ABA81132.1 - 1.2e-14 54.5 1.0 2.2e-09 37.1 0.0 2.5 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 ABA81132.1 - 8.1e-10 38.8 1.2 2.5e-09 37.2 1.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 ABA81132.1 - 8.8e-09 35.4 6.9 1.1e-07 31.8 6.2 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 ABA81132.1 - 8.9e-08 31.6 3.4 0.00016 20.9 3.1 2.4 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 ABA81132.1 - 1.3e-06 27.9 0.8 2.7e-06 26.8 0.8 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 ABA81132.1 - 2.3e-06 27.1 0.1 0.0001 21.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA81132.1 - 1.6e-05 25.4 1.0 0.0014 19.1 0.4 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 ABA81132.1 - 3.4e-05 23.3 0.4 7e-05 22.2 0.4 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 ABA81132.1 - 4.8e-05 22.9 2.4 4.8e-05 22.9 2.4 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 ABA81132.1 - 0.001 18.2 2.6 0.014 14.5 0.9 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 ABA81132.1 - 0.0013 17.5 1.7 0.018 13.8 1.0 2.2 2 0 0 2 2 2 1 HI0933-like protein GMC_oxred_N PF00732.19 ABA81132.1 - 0.0023 17.3 0.5 0.0056 16.1 0.1 1.7 2 0 0 2 2 2 1 GMC oxidoreductase GDI PF00996.18 ABA81132.1 - 0.0062 15.1 0.0 0.17 10.4 0.0 2.1 2 0 0 2 2 2 1 GDP dissociation inhibitor Pyr_redox_3 PF13738.6 ABA81132.1 - 0.0062 15.8 1.7 0.011 15.0 1.7 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 ABA81132.1 - 0.26 10.1 4.6 2.9 6.6 1.7 2.1 2 0 0 2 2 2 0 Tryptophan halogenase AMP-binding PF00501.28 ABA81133.1 - 3.7e-79 266.3 0.0 4.6e-79 266.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 ABA81133.1 - 7.3e-17 62.1 2.1 1.6e-16 61.0 2.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Aldedh PF00171.22 ABA81134.1 - 2.2e-166 553.9 0.0 2.5e-166 553.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Fur_reg_FbpB PF13040.6 ABA81134.1 - 0.12 11.9 0.4 0.25 10.9 0.4 1.4 1 0 0 1 1 1 0 Fur-regulated basic protein B Aminotran_3 PF00202.21 ABA81135.1 - 5.4e-85 285.5 0.0 6.3e-85 285.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III 3HCDH_N PF02737.18 ABA81136.1 - 1.2e-56 191.4 0.0 1.9e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 ABA81136.1 - 8.2e-39 133.4 0.0 2.4e-38 131.9 0.0 1.7 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 ABA81136.1 - 8e-25 87.3 0.4 3.6e-21 75.6 0.1 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 ABA81136.1 - 3.1e-23 82.8 0.0 5.5e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 ABA81136.1 - 0.0016 18.6 0.1 0.0036 17.5 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 ABA81136.1 - 0.0019 17.5 0.3 0.003 16.8 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 ABA81136.1 - 0.0025 18.4 3.0 0.0051 17.4 1.8 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 ABA81136.1 - 0.031 14.8 0.7 0.079 13.5 0.7 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA81136.1 - 0.046 13.9 1.0 0.13 12.5 1.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 ABA81136.1 - 0.17 11.5 0.4 0.3 10.7 0.4 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TraC PF07820.12 ABA81136.1 - 0.19 12.1 3.5 0.24 11.8 0.4 2.7 2 0 0 2 2 2 0 TraC-like protein Thiolase_N PF00108.23 ABA81137.1 - 4.1e-73 245.9 0.2 5.1e-73 245.6 0.2 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 ABA81137.1 - 1e-40 138.2 1.1 1e-40 138.2 1.1 2.1 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 ABA81137.1 - 4.9e-05 23.0 3.4 7.6e-05 22.4 0.4 2.5 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ADH_N_2 PF16884.5 ABA81138.1 - 1.1e-39 134.7 0.2 2.5e-39 133.5 0.2 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 ABA81138.1 - 2.4e-15 56.7 0.0 3.8e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 ABA81138.1 - 6.1e-13 50.0 0.0 1.1e-12 49.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Sulfotransfer_3 PF13469.6 ABA81139.1 - 4.4e-13 50.1 0.1 9.7e-13 49.0 0.1 1.6 1 1 0 1 1 1 1 Sulfotransferase family Sulfotransfer_1 PF00685.27 ABA81139.1 - 1.2e-05 25.0 0.0 3.5e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Sulfotransferase domain HemolysinCabind PF00353.19 ABA81140.2 - 1.1e-72 239.3 197.0 1.5e-10 40.8 11.6 14.7 6 4 10 17 17 17 15 RTX calcium-binding nonapeptide repeat (4 copies) Cadherin_4 PF17803.1 ABA81140.2 - 4.9e-17 62.3 33.1 3.4e-13 50.0 8.8 17.6 15 5 1 16 16 16 5 Bacterial cadherin-like domain Big_9 PF17963.1 ABA81140.2 - 4.5e-14 53.0 29.1 2.3e-09 37.9 15.0 17.5 16 6 3 19 19 19 5 Bacterial Ig domain Cadherin_5 PF17892.1 ABA81140.2 - 3.4e-06 26.9 52.6 0.0083 16.1 9.3 13.3 10 2 2 12 12 12 3 Cadherin-like domain Olfactory_mark PF06554.12 ABA81140.2 - 0.059 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Olfactory marker protein rve PF00665.26 ABA81142.2 - 3.2e-07 30.6 0.0 9.3e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain PRORP PF16953.5 ABA81142.2 - 0.12 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein-only RNase P TIR_2 PF13676.6 ABA81147.2 - 8.7e-15 55.4 0.0 1.3e-14 54.8 0.0 1.3 1 0 0 1 1 1 1 TIR domain TIR PF01582.20 ABA81147.2 - 0.032 14.0 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 TIR domain TIR-like PF10137.9 ABA81147.2 - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 1 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain zf-HYPF PF07503.12 ABA81147.2 - 0.24 11.2 1.4 0.44 10.4 1.4 1.4 1 0 0 1 1 1 0 HypF finger DNA_pol_A_exoN PF18305.1 ABA81147.2 - 0.36 11.2 1.7 12 6.3 0.8 3.0 2 1 0 2 2 2 0 3' to 5' exonuclease C-terminal domain Ribonuc_red_lgC PF02867.15 ABA81148.1 - 2.2e-142 475.3 0.0 3.9e-142 474.4 0.0 1.4 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 ABA81148.1 - 5.9e-09 35.8 0.0 1.3e-08 34.7 0.0 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain DUF1489 PF07370.11 ABA81149.1 - 2.5e-55 186.0 0.0 2.7e-55 185.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1489) HisG PF01634.18 ABA81150.1 - 5.4e-35 120.7 0.0 6.9e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase tRNA-synt_His PF13393.6 ABA81151.1 - 2.1e-29 102.8 1.1 2.5e-26 92.7 1.1 2.1 1 1 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2d PF01409.20 ABA81151.1 - 0.036 13.5 0.0 0.052 13.0 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) TetR_C_31 PF17940.1 ABA81151.1 - 8.9 6.6 28.6 0.073 13.3 7.2 3.7 2 1 2 4 4 4 0 Tetracyclin repressor-like, C-terminal domain tRNA-synt_His PF13393.6 ABA81152.1 - 2.3e-39 135.5 0.0 9.8e-39 133.4 0.0 1.8 1 1 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 ABA81152.1 - 3.4e-08 33.5 0.0 7.4e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 ABA81152.1 - 6.5e-06 26.2 0.0 1.3e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) SlyX PF04102.12 ABA81153.1 - 3.8e-17 62.7 1.6 4.2e-17 62.5 1.6 1.0 1 0 0 1 1 1 1 SlyX Csm1_N PF18504.1 ABA81153.1 - 0.00028 21.2 1.7 0.00033 20.9 1.7 1.1 1 0 0 1 1 1 1 Csm1 N-terminal domain DUF4618 PF15397.6 ABA81153.1 - 0.004 16.6 0.5 0.004 16.6 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) COMP PF11598.8 ABA81153.1 - 0.0044 17.5 0.4 0.006 17.0 0.4 1.2 1 0 0 1 1 1 1 Cartilage oligomeric matrix protein PspA_IM30 PF04012.12 ABA81153.1 - 0.0084 15.7 1.3 0.0093 15.6 1.3 1.0 1 0 0 1 1 1 1 PspA/IM30 family TMF_TATA_bd PF12325.8 ABA81153.1 - 0.042 14.1 1.2 0.05 13.8 1.2 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding GrpE PF01025.19 ABA81153.1 - 0.06 13.0 0.3 0.065 12.9 0.3 1.0 1 0 0 1 1 1 0 GrpE Atg14 PF10186.9 ABA81153.1 - 0.096 11.8 0.1 0.1 11.7 0.1 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 NRBF2 PF08961.10 ABA81153.1 - 0.16 11.6 0.8 0.46 10.0 0.8 1.6 1 1 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator DNA_pol3_alpha PF07733.12 ABA81154.1 - 3e-101 338.4 0.0 5.2e-101 337.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 ABA81154.1 - 5.3e-59 198.3 0.0 9.5e-59 197.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain PHP PF02811.19 ABA81154.1 - 2.4e-34 119.0 0.0 7.5e-34 117.4 0.0 1.9 2 0 0 2 2 2 1 PHP domain HHH_6 PF14579.6 ABA81154.1 - 6.6e-22 77.6 0.3 3.6e-21 75.2 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.25 ABA81154.1 - 0.00032 20.6 0.0 0.00075 19.4 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 ABA81154.1 - 0.00034 20.6 0.0 0.00085 19.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4539) DUF655 PF04919.12 ABA81154.1 - 0.021 14.8 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF655) FAD_binding_5 PF00941.21 ABA81155.1 - 2e-53 180.6 0.0 4.4e-53 179.5 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 ABA81155.1 - 9.1e-30 102.9 0.8 2.2e-29 101.6 0.8 1.7 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 ABA81155.1 - 2e-28 98.2 1.0 4.5e-28 97.1 1.0 1.6 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 ABA81155.1 - 3.5e-08 33.3 0.7 1e-07 31.8 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 ABA81156.1 - 2.6e-200 666.6 1.9 1.4e-106 357.2 0.0 2.0 2 0 0 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 ABA81156.1 - 4.9e-21 75.2 0.0 9.7e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XdhC_C PF13478.6 ABA81157.1 - 1.2e-23 84.0 0.0 1.9e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 ABA81157.1 - 2.2e-15 56.6 11.0 6.1e-15 55.2 11.0 1.8 1 0 0 1 1 1 1 XdhC and CoxI family ABC_tran PF00005.27 ABA81158.1 - 2.6e-47 160.8 0.0 5.5e-36 124.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 ABA81158.1 - 2.1e-07 31.1 0.0 0.086 12.6 0.0 3.1 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DSBA PF01323.20 ABA81158.1 - 9.6e-06 25.5 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 DSBA-like thioredoxin domain AAA_29 PF13555.6 ABA81158.1 - 0.00076 19.2 0.0 0.0023 17.6 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA81158.1 - 0.0088 16.0 0.1 0.089 12.7 0.0 2.4 3 0 0 3 3 3 1 RsgA GTPase SMC_N PF02463.19 ABA81158.1 - 0.013 14.9 0.0 0.53 9.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA81158.1 - 0.019 15.3 0.1 0.17 12.2 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 ABA81158.1 - 0.03 13.9 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA81158.1 - 0.035 13.8 0.0 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain MukB PF04310.12 ABA81158.1 - 0.056 13.2 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_23 PF13476.6 ABA81158.1 - 0.079 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA81158.1 - 0.11 12.5 0.9 1.4 8.8 0.0 2.6 2 1 0 2 2 2 0 NACHT domain DUF2813 PF11398.8 ABA81158.1 - 0.26 10.5 0.0 0.67 9.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) BPD_transp_2 PF02653.16 ABA81159.1 - 7.5e-41 140.1 33.1 7.5e-41 140.1 33.1 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA81160.1 - 3.8e-38 131.2 36.2 4.6e-38 130.9 36.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Bmp PF02608.14 ABA81161.1 - 2.7e-47 161.2 0.0 3.4e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_6 PF13458.6 ABA81161.1 - 2.3e-07 30.8 0.3 0.00098 18.9 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein AroM PF07302.11 ABA81161.1 - 0.14 11.6 0.0 1.7 8.0 0.0 2.0 1 1 1 2 2 2 0 AroM protein Pyr_redox_2 PF07992.14 ABA81163.1 - 2.4e-14 53.2 0.0 6.9e-14 51.8 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 ABA81163.1 - 0.00011 22.0 0.3 0.075 12.6 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 ABA81163.1 - 0.005 16.8 0.0 3.8 7.5 0.0 2.4 1 1 1 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 ABA81163.1 - 0.043 14.4 0.0 1.9 9.1 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 ABA81163.1 - 0.085 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DAO PF01266.24 ABA81164.1 - 2.2e-50 172.2 8.0 2.5e-50 172.0 8.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 ABA81164.1 - 2.1e-05 25.0 0.1 0.0079 16.7 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA81164.1 - 3.7e-05 23.9 0.2 8.8e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 ABA81164.1 - 3.7e-05 23.1 0.3 0.0028 16.9 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 ABA81164.1 - 0.0001 21.3 1.2 0.1 11.4 0.2 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 ABA81164.1 - 0.0018 17.5 0.1 0.0034 16.5 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 ABA81164.1 - 0.0047 16.2 0.1 0.075 12.3 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 ABA81164.1 - 0.009 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 ABA81164.1 - 0.009 15.3 0.0 0.58 9.4 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA81164.1 - 0.013 14.6 8.1 0.011 14.9 5.7 2.1 2 1 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 ABA81164.1 - 0.015 14.4 0.9 0.077 12.0 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 ABA81164.1 - 0.017 14.5 0.1 0.046 13.1 0.1 1.7 2 0 0 2 2 2 0 GMC oxidoreductase HI0933_like PF03486.14 ABA81164.1 - 0.055 12.2 4.5 0.19 10.4 0.2 2.5 3 0 0 3 3 3 0 HI0933-like protein FAD_oxidored PF12831.7 ABA81164.1 - 0.21 10.9 1.5 0.22 10.8 0.5 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF938 PF06080.12 ABA81165.1 - 7.4e-51 172.8 0.0 8.4e-51 172.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_25 PF13649.6 ABA81165.1 - 4.9e-05 23.9 0.0 9.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA81165.1 - 0.023 15.4 0.0 0.044 14.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DUF2267 PF10025.9 ABA81165.1 - 0.025 14.9 0.1 1.3 9.3 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) MTS PF05175.14 ABA81165.1 - 0.029 13.9 0.0 1.2 8.6 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_23 PF13489.6 ABA81165.1 - 0.041 13.7 0.0 0.13 12.1 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Glyco_hydro_25 PF01183.20 ABA81166.1 - 1.9e-51 174.8 0.0 2.3e-51 174.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 25 GCV_T PF01571.21 ABA81167.1 - 5.9e-72 242.1 0.0 9.7e-72 241.4 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 ABA81167.1 - 1.6e-52 179.2 0.7 1.6e-52 179.2 0.7 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 ABA81167.1 - 1.7e-17 63.1 0.0 3.8e-17 62.0 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 ABA81167.1 - 5.9e-14 52.1 0.4 2.4e-13 50.2 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase central domain FAD_binding_3 PF01494.19 ABA81167.1 - 4e-05 23.0 0.3 0.026 13.8 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain ApbA PF02558.16 ABA81167.1 - 0.00038 20.1 0.8 0.0013 18.3 0.4 2.1 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.24 ABA81167.1 - 0.0019 17.4 0.3 0.041 12.9 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 ABA81167.1 - 0.0038 17.1 0.3 0.0065 16.4 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 ABA81167.1 - 0.0045 16.3 0.1 0.24 10.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 ABA81167.1 - 0.011 15.0 0.8 0.12 11.6 0.4 2.3 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA81167.1 - 0.015 15.5 0.1 0.047 13.9 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 ABA81167.1 - 0.047 13.0 0.1 0.082 12.2 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 ABA81167.1 - 0.18 12.3 0.0 0.42 11.1 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 ABA81167.1 - 0.22 11.8 0.0 0.57 10.4 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain ABC-3 PF00950.17 ABA81168.1 - 5.7e-65 219.4 26.0 6.5e-65 219.2 26.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 ABA81168.1 - 1.3e-07 31.0 29.8 2e-07 30.3 29.8 1.3 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 ABA81169.1 - 1.8e-27 96.5 0.0 2.6e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81169.1 - 5.5e-12 46.1 1.6 5.6e-06 26.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81169.1 - 1.2e-06 28.1 0.0 0.00042 19.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 ABA81169.1 - 6.5e-06 25.2 0.2 0.019 13.8 0.1 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.6 ABA81169.1 - 8.1e-06 26.2 0.0 1.9e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA81169.1 - 8.5e-06 25.4 0.0 1.5e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 ABA81169.1 - 1.9e-05 25.3 0.0 2.5e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA81169.1 - 6.5e-05 23.4 0.5 9.9e-05 22.8 0.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 ABA81169.1 - 0.00015 21.4 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 ABA81169.1 - 0.00061 18.9 0.0 0.001 18.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_15 PF13175.6 ABA81169.1 - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 ABA81169.1 - 0.0015 18.5 0.0 0.0026 17.8 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 ABA81169.1 - 0.002 18.1 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 ABA81169.1 - 0.0028 17.4 0.2 0.0067 16.2 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA81169.1 - 0.0048 17.1 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 ABA81169.1 - 0.0052 16.2 0.0 0.0083 15.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 ABA81169.1 - 0.014 15.0 0.0 2.7 7.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 ABA81169.1 - 0.015 15.4 0.0 0.034 14.2 0.0 1.6 2 0 0 2 2 2 0 Dynamin family ATPase_2 PF01637.18 ABA81169.1 - 0.022 14.7 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Adeno_IVa2 PF02456.15 ABA81169.1 - 0.023 13.5 0.0 0.041 12.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein Rad17 PF03215.15 ABA81169.1 - 0.031 14.2 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 ABA81169.1 - 0.035 13.8 0.0 3.3 7.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 ABA81169.1 - 0.041 13.8 0.1 0.08 12.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 ABA81169.1 - 0.042 13.4 0.1 0.076 12.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.18 ABA81169.1 - 0.075 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MobB PF03205.14 ABA81169.1 - 0.1 12.5 0.1 0.24 11.3 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 ABA81169.1 - 0.11 13.1 0.0 0.22 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA81169.1 - 0.11 12.5 0.0 0.3 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 ABA81169.1 - 0.12 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.6 ABA81169.1 - 0.12 12.6 0.1 0.2 11.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.8 ABA81169.1 - 0.16 11.2 0.0 0.24 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) ATP_bind_1 PF03029.17 ABA81169.1 - 0.17 11.6 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF3584 PF12128.8 ABA81169.1 - 0.27 8.7 0.0 0.36 8.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FUR PF01475.19 ABA81170.1 - 1.4e-07 31.7 0.0 2.2e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family DUF4853 PF16145.5 ABA81170.1 - 0.032 14.4 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4853) ZnuA PF01297.17 ABA81171.1 - 1.8e-58 197.9 0.0 2.1e-58 197.8 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Zip PF02535.22 ABA81171.1 - 0.089 12.0 1.3 0.11 11.7 1.3 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Aldose_epim PF01263.20 ABA81172.1 - 5.7e-57 193.3 0.0 6.4e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Aldose 1-epimerase Gas_vesicle PF00741.18 ABA81173.1 - 2.2e-16 59.7 7.5 2.8e-16 59.3 7.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein Lyase_aromatic PF00221.19 ABA81174.1 - 1.1e-148 495.7 6.6 1.3e-148 495.5 6.6 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase GvpK PF05121.12 ABA81175.1 - 7.3e-31 106.0 2.3 8.3e-31 105.9 2.3 1.0 1 0 0 1 1 1 1 Gas vesicle protein K Terminase_4 PF05119.12 ABA81175.1 - 0.012 16.0 0.1 0.016 15.6 0.1 1.2 1 0 0 1 1 1 0 Phage terminase, small subunit Plasmid_RAQPRD PF09686.10 ABA81175.1 - 0.059 13.6 0.1 0.6 10.4 0.0 2.1 1 1 1 2 2 2 0 Plasmid protein of unknown function (Plasmid_RAQPRD) GvpL_GvpF PF06386.11 ABA81176.2 - 0.00026 21.0 0.2 0.015 15.2 0.1 2.1 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF FGGY_N PF00370.21 ABA81176.2 - 0.18 11.3 0.0 0.24 10.9 0.0 1.1 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain GvpL_GvpF PF06386.11 ABA81177.1 - 1e-23 84.5 0.1 1.5e-23 84.0 0.1 1.2 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpL_GvpF PF06386.11 ABA81178.1 - 8.8e-19 68.4 0.2 8.4e-09 35.7 0.1 2.2 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF GvpG PF05120.12 ABA81179.1 - 9.9e-15 54.3 0.2 1.1e-14 54.2 0.2 1.0 1 0 0 1 1 1 1 Gas vesicle protein G CdvA PF18822.1 ABA81179.1 - 0.066 13.0 0.0 0.079 12.8 0.0 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain GvpL_GvpF PF06386.11 ABA81180.1 - 6.1e-43 147.5 0.0 6.8e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF HSP20 PF00011.21 ABA81181.1 - 1.7e-06 28.1 0.0 8.7e-05 22.6 0.0 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 ABA81181.1 - 1.6e-05 24.4 0.0 2.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA Pardaxin PF07425.11 ABA81181.1 - 0.11 12.2 1.1 0.12 12.0 0.1 1.6 2 0 0 2 2 2 0 Pardaxin Gas_vesicle PF00741.18 ABA81182.1 - 3.4e-18 65.5 8.7 3.4e-18 65.5 8.7 1.7 2 0 0 2 2 2 1 Gas vesicle protein GvpO PF05800.11 ABA81183.2 - 2.7e-12 46.5 0.0 3.1e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO DUF4567 PF15131.6 ABA81183.2 - 0.14 12.3 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4567) AAA_assoc_2 PF16193.5 ABA81183.2 - 0.21 12.0 0.1 3.1 8.2 0.0 2.0 1 1 1 2 2 2 0 AAA C-terminal domain Uso1_p115_C PF04871.13 ABA81184.1 - 0.056 13.8 0.1 0.056 13.8 0.1 1.1 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region LytR_cpsA_psr PF03816.14 ABA81184.1 - 0.083 13.0 0.4 0.091 12.9 0.4 1.1 1 0 0 1 1 1 0 Cell envelope-related transcriptional attenuator domain AAA_5 PF07728.14 ABA81185.1 - 3.2e-17 62.8 0.0 5.4e-16 58.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 ABA81185.1 - 1.2e-08 34.9 0.0 4.8e-07 29.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 ABA81185.1 - 5.6e-05 23.6 0.4 0.00013 22.4 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA81185.1 - 0.0002 21.8 0.0 0.0003 21.2 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 ABA81185.1 - 0.00028 20.2 0.1 0.00042 19.6 0.1 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 ABA81185.1 - 0.0019 18.0 0.1 0.0061 16.3 0.1 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 ABA81185.1 - 0.0019 17.8 0.0 0.0037 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 ABA81185.1 - 0.0043 17.0 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 NACHT domain TsaE PF02367.17 ABA81185.1 - 0.006 16.6 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 ABA81185.1 - 0.015 15.0 0.1 0.046 13.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 ABA81185.1 - 0.017 15.4 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA81185.1 - 0.022 14.9 0.1 0.048 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 ABA81185.1 - 0.025 14.5 0.1 0.057 13.3 0.1 1.5 1 1 0 1 1 1 0 NTPase AAA_6 PF12774.7 ABA81185.1 - 0.074 12.0 0.0 2.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Sigma54_activat PF00158.26 ABA81185.1 - 0.11 12.2 0.0 1.6 8.4 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 ABA81185.1 - 0.12 11.6 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.6 ABA81185.1 - 0.13 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 ABA81185.1 - 0.16 11.3 0.1 0.3 10.4 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Urate_ox_N PF06181.11 ABA81186.1 - 4.5e-134 446.4 16.1 5.5e-134 446.2 16.1 1.0 1 0 0 1 1 1 1 Urate oxidase N-terminal Cytochrome_CBB3 PF13442.6 ABA81186.1 - 0.00044 20.5 0.1 0.00095 19.4 0.1 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III HemY_N PF07219.13 ABA81186.1 - 1 9.6 6.7 9.7 6.4 0.1 3.3 3 0 0 3 3 3 0 HemY protein N-terminus DUF2237 PF09996.9 ABA81187.1 - 3.4e-50 168.9 0.0 3.8e-50 168.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) PALP PF00291.25 ABA81188.1 - 5e-46 157.4 0.0 6e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF2065 PF09838.9 ABA81188.1 - 0.16 12.0 0.2 2.8 8.0 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) Acetyltransf_1 PF00583.25 ABA81189.1 - 1.8e-15 57.2 0.0 2.1e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 ABA81189.1 - 8.9e-11 41.8 0.0 1.4e-10 41.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 ABA81189.1 - 3.7e-09 36.9 0.0 4.9e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 ABA81189.1 - 2.7e-05 24.3 0.1 4.5e-05 23.5 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 ABA81189.1 - 0.0008 19.3 0.1 0.0013 18.7 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 ABA81189.1 - 0.0013 18.9 0.0 0.0016 18.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 ABA81189.1 - 0.09 12.9 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PRAI PF00697.22 ABA81190.1 - 6.3e-46 156.6 0.0 7e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LapA_dom PF06305.11 ABA81191.2 - 8e-10 38.4 0.3 8e-10 38.4 0.3 2.0 2 1 0 2 2 2 1 Lipopolysaccharide assembly protein A domain DUF4381 PF14316.6 ABA81191.2 - 0.094 12.9 0.1 0.094 12.9 0.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4381) SieB PF14163.6 ABA81191.2 - 0.16 11.5 0.6 0.55 9.7 0.0 1.9 1 1 1 2 2 2 0 Super-infection exclusion protein B TNFR_16_TM PF18422.1 ABA81191.2 - 0.72 9.9 0.0 0.72 9.9 0.0 2.0 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain CcmD PF04995.14 ABA81191.2 - 1.5 9.0 5.1 3.3 7.9 0.1 2.6 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Bac_DNA_binding PF00216.21 ABA81192.1 - 4.5e-32 110.1 0.1 5e-32 110.0 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 ABA81192.1 - 1.3e-06 28.5 0.0 1.4e-06 28.4 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_1 PF14908.6 ABA81192.1 - 2e-05 24.7 0.0 2.1e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 1 LigT_PEase PF02834.16 ABA81192.1 - 0.00038 20.6 0.0 0.00053 20.1 0.0 1.2 1 0 0 1 1 1 1 LigT like Phosphoesterase HU-DNA_bdg PF14848.6 ABA81192.1 - 0.0027 17.7 0.0 0.003 17.6 0.0 1.3 1 1 0 1 1 1 1 DNA-binding domain HU-CCDC81_euk_2 PF18289.1 ABA81192.1 - 0.0034 17.5 0.0 0.0051 16.9 0.0 1.4 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-CCDC81_bac_2 PF18175.1 ABA81192.1 - 0.0069 16.2 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_bac_1 PF18174.1 ABA81192.1 - 0.07 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 1 Tim44 PF04280.15 ABA81192.1 - 0.081 13.0 0.0 0.11 12.6 0.0 1.2 1 1 0 1 1 1 0 Tim44-like domain S1 PF00575.23 ABA81193.1 - 3.4e-102 334.9 31.3 8.4e-21 74.1 0.3 6.1 6 0 0 6 6 6 6 S1 RNA binding domain PCB_OB PF17092.5 ABA81193.1 - 1.3e-08 35.6 11.6 0.021 15.6 0.0 6.0 1 1 5 6 6 6 3 Penicillin-binding protein OB-like domain S1_2 PF13509.6 ABA81193.1 - 1.6e-05 24.9 9.1 0.14 12.3 0.0 6.2 6 1 1 7 7 7 2 S1 domain RNase_II_C_S1 PF18614.1 ABA81193.1 - 0.0085 16.0 15.6 0.19 11.7 0.4 5.9 6 1 1 7 7 7 1 RNase II-type exonuclease C-terminal S1 domain NHase_beta PF02211.15 ABA81193.1 - 0.034 14.2 0.1 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Nitrile hydratase beta subunit MRP-S35 PF10246.9 ABA81193.1 - 0.046 13.7 3.0 3.3 7.7 0.0 3.4 4 0 0 4 4 4 0 Mitochondrial ribosomal protein MRP-S35 EXOSC1 PF10447.9 ABA81193.1 - 0.077 13.6 12.0 1.3 9.6 0.1 4.6 3 1 1 4 4 4 0 Exosome component EXOSC1/CSL4 Pyrid_ox_like PF16242.5 ABA81193.1 - 0.096 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like CsrA PF02599.16 ABA81193.1 - 0.4 10.7 16.5 1.3 9.0 0.2 5.4 7 0 0 7 7 7 0 Global regulator protein family Ribosomal_L19 PF01245.20 ABA81193.1 - 0.65 9.9 8.1 24 4.9 0.1 4.8 4 1 1 5 5 5 0 Ribosomal protein L19 RuvA_N PF01330.21 ABA81193.1 - 1.2 9.3 5.0 7.2 6.8 0.1 3.5 3 0 0 3 3 3 0 RuvA N terminal domain TRAM PF01938.20 ABA81193.1 - 3.4 7.7 17.1 11 6.1 0.1 5.6 6 0 0 6 6 6 0 TRAM domain Cytidylate_kin PF02224.18 ABA81194.1 - 2.1e-54 184.5 3.4 4.7e-42 144.1 0.9 2.0 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 ABA81194.1 - 0.00025 21.2 0.0 0.00038 20.6 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_18 PF13238.6 ABA81194.1 - 0.00044 20.8 0.0 0.0007 20.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 ABA81194.1 - 0.00047 20.3 2.1 0.00081 19.6 2.1 1.3 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.6 ABA81194.1 - 0.00099 19.3 0.0 0.0025 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 ABA81194.1 - 0.0015 18.9 0.6 0.0034 17.8 0.1 2.0 1 1 1 2 2 2 1 AAA domain EPSP_synthase PF00275.20 ABA81195.1 - 3.9e-100 335.5 0.0 4.4e-100 335.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Methyltransf_4 PF02390.17 ABA81196.1 - 1.5e-37 128.7 0.0 1.8e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 ABA81196.1 - 0.091 12.6 0.0 0.15 11.9 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain PG_binding_1 PF01471.18 ABA81197.1 - 3.7e-06 27.1 0.0 7.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_2 PF08823.11 ABA81197.1 - 0.0013 19.0 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA81197.1 - 0.092 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Predicted Peptidoglycan domain POTRA_TamA_1 PF17243.2 ABA81197.1 - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 POTRA domain TamA domain 1 S-AdoMet_synt_C PF02773.16 ABA81198.1 - 4.6e-65 217.8 0.2 9.4e-65 216.8 0.0 1.6 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 ABA81198.1 - 1.1e-38 132.2 0.0 1.8e-38 131.5 0.0 1.4 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 ABA81198.1 - 3.8e-36 123.7 0.0 7.1e-36 122.9 0.0 1.5 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain CN_hydrolase PF00795.22 ABA81199.1 - 1.2e-24 87.1 0.0 3e-24 85.8 0.0 1.7 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase CorC_HlyC PF03471.17 ABA81200.1 - 4.8e-16 58.5 3.1 9.2e-16 57.6 0.3 2.3 1 1 0 2 2 2 1 Transporter associated domain CBS PF00571.28 ABA81200.1 - 5.1e-14 52.5 2.1 5.4e-08 33.2 0.1 2.4 2 0 0 2 2 2 2 CBS domain UPF0054 PF02130.17 ABA81201.1 - 8.8e-32 109.6 0.0 1.1e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 Zincin_1 PF06262.11 ABA81201.1 - 0.018 15.1 0.1 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 Zincin-like metallopeptidase F-box-like_2 PF13013.6 ABA81201.1 - 0.087 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 F-box-like domain PhoH PF02562.16 ABA81202.1 - 7.5e-91 303.1 0.0 1.8e-90 301.9 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 ABA81202.1 - 2.1e-09 37.4 0.4 9.8e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 ABA81202.1 - 9.8e-06 26.0 0.3 4.1e-05 23.9 0.1 2.0 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 ABA81202.1 - 0.0052 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DRTGG PF07085.12 ABA81202.1 - 0.019 14.8 0.3 0.2 11.5 0.0 2.5 3 0 0 3 3 3 0 DRTGG domain AAA_22 PF13401.6 ABA81202.1 - 0.031 14.6 0.2 13 6.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 ABA81202.1 - 0.031 13.8 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zot PF05707.12 ABA81202.1 - 0.15 11.6 0.0 9.4 5.8 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA PF00004.29 ABA81202.1 - 0.18 12.2 0.3 0.46 10.9 0.3 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0004 PF00919.20 ABA81203.1 - 6.1e-33 112.8 0.0 1.2e-32 111.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 ABA81203.1 - 1.5e-29 103.6 0.0 2.3e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 ABA81203.1 - 7.5e-07 29.1 0.0 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 ABA81203.1 - 0.016 15.3 0.1 0.063 13.4 0.1 2.0 1 1 0 1 1 1 0 TRAM domain B12-binding PF02310.19 ABA81203.1 - 0.062 13.4 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain Lipase_GDSL_2 PF13472.6 ABA81204.2 - 3.9e-22 79.5 0.2 4.9e-22 79.2 0.2 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 ABA81204.2 - 2.4e-07 30.9 0.0 6.1e-07 29.6 0.0 1.7 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF2271 PF10029.9 ABA81204.2 - 0.00046 19.8 0.0 0.00066 19.3 0.0 1.2 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2271) OSK PF17182.4 ABA81204.2 - 0.00064 19.0 0.0 0.00084 18.6 0.0 1.1 1 0 0 1 1 1 1 OSK domain ABC_tran PF00005.27 ABA81205.1 - 9.3e-32 110.4 0.0 1.2e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81205.1 - 9.6e-05 22.3 0.0 0.025 14.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81205.1 - 0.00023 20.7 0.0 0.12 11.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81205.1 - 0.0089 15.8 0.7 0.018 14.8 0.7 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81205.1 - 0.011 16.1 0.3 0.014 15.7 0.3 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 ABA81205.1 - 0.013 15.1 0.2 0.79 9.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA81205.1 - 0.023 14.6 0.1 0.032 14.1 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase PEPCK_GTP PF00821.18 ABA81205.1 - 0.12 11.1 0.0 2 7.2 0.0 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain MacB_PCD PF12704.7 ABA81206.1 - 1.2e-12 48.6 4.6 7.6e-09 36.2 0.1 2.7 2 0 0 2 2 2 2 MacB-like periplasmic core domain FtsX PF02687.21 ABA81206.1 - 2.8e-09 37.3 19.0 7.7e-06 26.3 6.1 4.9 7 0 0 7 7 7 2 FtsX-like permease family Rhodanese PF00581.20 ABA81208.1 - 1.7e-12 47.8 0.0 9.6e-12 45.4 0.0 2.2 2 1 0 2 2 2 1 Rhodanese-like domain Y_phosphatase3 PF13350.6 ABA81208.1 - 0.031 14.2 0.0 0.094 12.7 0.0 1.7 2 0 0 2 2 2 0 Tyrosine phosphatase family Pyr_redox_2 PF07992.14 ABA81209.1 - 5.6e-31 107.9 0.0 6.6e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 ABA81209.1 - 5e-11 43.0 0.2 1e-10 42.0 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase PALP PF00291.25 ABA81209.1 - 0.0049 16.3 0.6 0.025 14.0 0.3 2.1 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Lycopene_cycl PF05834.12 ABA81209.1 - 0.026 13.6 2.3 2.6 7.0 0.5 2.4 2 0 0 2 2 2 0 Lycopene cyclase protein Sigma54_DBD PF04552.13 ABA81210.1 - 3.2e-54 183.0 0.0 5e-54 182.3 0.0 1.2 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 ABA81210.1 - 6.9e-33 114.0 0.0 1.3e-32 113.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 ABA81210.1 - 3.9e-07 29.8 0.7 6.7e-07 29.1 0.7 1.3 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) HTH_IclR PF09339.10 ABA81210.1 - 8.1e-05 22.3 0.4 0.008 16.0 0.1 3.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.6 ABA81210.1 - 8.5e-05 22.2 1.4 0.0042 16.8 0.0 3.5 3 1 0 3 3 3 1 Homeodomain-like domain HTH_3 PF01381.22 ABA81210.1 - 0.00058 19.9 0.0 0.0079 16.2 0.0 3.0 4 0 0 4 4 2 1 Helix-turn-helix MarR_2 PF12802.7 ABA81210.1 - 0.0011 18.8 3.9 0.042 13.7 0.1 3.8 4 0 0 4 4 4 1 MarR family HTH_Tnp_ISL3 PF13542.6 ABA81210.1 - 0.0018 17.7 0.2 0.0088 15.4 0.2 2.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 ABA81210.1 - 0.0045 17.3 2.5 0.0045 17.3 2.5 5.2 5 2 1 6 6 6 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA81210.1 - 0.005 16.8 0.3 0.022 14.8 0.3 2.1 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 ABA81210.1 - 0.0079 16.1 0.0 1.6 8.7 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 ABA81210.1 - 0.018 15.2 4.8 0.61 10.3 0.0 3.9 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_17 PF12728.7 ABA81210.1 - 0.022 14.9 0.0 0.12 12.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 ABA81210.1 - 0.065 13.0 0.0 0.065 13.0 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain LacI PF00356.21 ABA81210.1 - 0.074 12.9 2.5 0.28 11.0 0.2 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family Phage_CII PF05269.11 ABA81210.1 - 0.087 13.1 0.0 0.26 11.5 0.0 1.8 1 0 0 1 1 1 0 Bacteriophage CII protein HTH_29 PF13551.6 ABA81210.1 - 0.64 10.1 6.0 1.6 8.8 0.0 3.3 3 0 0 3 3 2 0 Winged helix-turn helix Hydant_A_N PF05378.13 ABA81211.1 - 9.8e-35 119.8 0.4 2e-32 112.3 0.0 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 ABA81211.1 - 1.6e-32 112.9 10.0 2.6e-31 109.0 6.6 3.4 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 ABA81211.1 - 8.5e-08 31.2 0.8 0.0062 15.2 0.2 2.5 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 ABA81211.1 - 2.8e-05 23.8 0.4 0.00029 20.4 0.1 2.4 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 ABA81211.1 - 0.0008 19.8 0.5 1.6 9.2 0.1 2.7 2 0 0 2 2 2 2 Cell division protein FtsA Resolvase PF00239.21 ABA81212.1 - 2.4e-22 79.6 2.6 2.4e-22 79.6 2.6 2.6 3 1 0 3 3 3 1 Resolvase, N terminal domain Recombinase PF07508.13 ABA81212.1 - 1.1e-19 70.7 0.0 2.2e-19 69.8 0.0 1.5 1 0 0 1 1 1 1 Recombinase Zn_ribbon_recom PF13408.6 ABA81212.1 - 3.6e-13 49.8 2.6 6.8e-13 48.9 2.6 1.5 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain ShlB PF03865.13 ABA81212.1 - 0.16 11.4 0.0 0.24 10.8 0.0 1.1 1 0 0 1 1 1 0 Haemolysin secretion/activation protein ShlB/FhaC/HecB UPF0561 PF10573.9 ABA81212.1 - 0.33 11.1 2.3 0.89 9.7 1.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0561 ParBc PF02195.18 ABA81213.1 - 1.1e-11 44.9 0.0 2.7e-11 43.6 0.0 1.8 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_35 PF13693.6 ABA81213.1 - 0.049 13.7 1.3 4 7.6 0.7 2.9 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 ABA81213.1 - 0.14 12.0 4.3 1.3 8.9 0.1 3.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_38 PF13936.6 ABA81213.1 - 0.2 11.5 0.7 0.97 9.3 0.7 2.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2312 PF10073.9 ABA81214.1 - 2.4e-29 100.8 2.5 3.2e-29 100.4 2.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) Cadherin_C_2 PF16492.5 ABA81215.1 - 0.11 13.3 0.1 0.16 12.7 0.1 1.3 1 0 0 1 1 1 0 Cadherin cytoplasmic C-terminal DUF1601 PF07671.11 ABA81215.1 - 0.14 12.1 0.5 0.24 11.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1601) DUF1937 PF09152.10 ABA81218.2 - 5.1e-49 165.9 0.1 6.4e-49 165.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1937) DUF1376 PF07120.11 ABA81219.2 - 1.7e-06 28.3 0.0 2.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1376) PGA_cap PF09587.10 ABA81219.2 - 0.18 11.2 0.1 0.29 10.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap Glyco_transf_36 PF06165.11 ABA81222.1 - 3.7e-147 488.4 0.0 3.4e-80 269.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase family 36 Glyco_hydro_36 PF17167.4 ABA81222.1 - 3.1e-110 368.8 0.0 4.1e-110 368.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glycoamylase PF10091.9 ABA81222.1 - 1.7e-12 47.4 0.0 5.1e-12 45.8 0.0 1.8 1 1 0 1 1 1 1 Putative glucoamylase DUF3131 PF11329.8 ABA81222.1 - 0.0096 15.0 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3131) Glyco_hydro_65C PF03633.15 ABA81222.1 - 0.15 11.9 0.0 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain Glyco_trans_2_3 PF13632.6 ABA81222.1 - 0.62 9.9 5.6 14 5.5 5.6 2.5 1 1 0 1 1 1 0 Glycosyl transferase family group 2 DUF4440 PF14534.6 ABA81223.1 - 0.0025 18.2 0.1 0.0032 17.9 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) Cpn60_TCP1 PF00118.24 ABA81224.1 - 1.1e-89 301.4 17.4 2.8e-89 300.0 17.4 1.6 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family CPT PF07931.12 ABA81224.1 - 0.052 13.4 1.0 2.5 7.9 0.1 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein HTH_Crp_2 PF13545.6 ABA81226.1 - 5.3e-14 52.0 0.4 1.5e-13 50.5 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 ABA81226.1 - 1.5e-11 44.2 0.0 3.1e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Crp PF00325.20 ABA81226.1 - 8.9e-05 22.1 0.5 0.00029 20.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family MarR_2 PF12802.7 ABA81226.1 - 0.00077 19.3 0.7 0.0023 17.8 0.2 2.1 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 ABA81226.1 - 0.0031 17.8 0.0 0.0058 17.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 ABA81226.1 - 0.0086 15.9 0.0 0.057 13.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 ABA81226.1 - 0.02 14.8 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 ABA81226.1 - 0.093 13.2 0.1 0.45 11.0 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain CSD PF00313.22 ABA81232.1 - 7.4e-23 80.2 0.0 7.9e-23 80.1 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA81232.1 - 0.0032 17.1 0.0 0.0051 16.5 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain CSD PF00313.22 ABA81233.2 - 5.6e-25 87.0 0.0 6e-25 86.9 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 ABA81233.2 - 0.0017 18.0 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain DUF982 PF06169.12 ABA81234.1 - 1.9e-21 75.9 0.5 3e-21 75.2 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF982) Phage_integrase PF00589.22 ABA81235.2 - 6.9e-16 58.5 0.0 1.1e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family DUF4229 PF14012.6 ABA81236.1 - 0.0061 16.6 6.3 0.034 14.2 6.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF4229) YibE_F PF07907.11 ABA81236.1 - 0.023 14.2 0.2 0.031 13.8 0.2 1.1 1 0 0 1 1 1 0 YibE/F-like protein Chromate_transp PF02417.15 ABA81236.1 - 0.041 14.0 0.8 0.057 13.6 0.8 1.2 1 0 0 1 1 1 0 Chromate transporter Gram_pos_anchor PF00746.21 ABA81236.1 - 0.45 10.5 6.2 0.62 10.0 0.4 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif CPP1-like PF11833.8 ABA81236.1 - 2 8.0 4.8 0.82 9.3 0.6 2.0 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Sensor PF13796.6 ABA81236.1 - 6.8 6.7 8.6 18 5.4 4.1 2.4 2 1 0 2 2 2 0 Putative sensor Replicase PF03090.17 ABA81237.1 - 0.044 13.6 0.0 0.074 12.9 0.0 1.3 1 0 0 1 1 1 0 Replicase family Peptidase_S49 PF01343.18 ABA81238.1 - 2.9e-30 105.3 0.3 2.9e-30 105.3 0.3 1.5 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 ABA81238.1 - 4.8e-05 23.3 0.8 0.0003 20.7 0.1 2.2 1 1 1 2 2 2 1 Clp protease Phage_holin_3_3 PF16083.5 ABA81244.1 - 8.8e-13 48.2 1.5 8.8e-13 48.2 1.5 1.8 1 1 1 2 2 2 1 LydA holin phage, holin superfamily III BrnA_antitoxin PF14384.6 ABA81245.1 - 0.0058 17.1 0.1 0.027 14.9 0.1 1.9 1 1 0 1 1 1 1 BrnA antitoxin of type II toxin-antitoxin system BrnT_toxin PF04365.13 ABA81246.2 - 1.5e-19 70.1 0.0 1.7e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system MethyltransfD12 PF02086.15 ABA81247.1 - 2.3e-15 57.0 0.0 3.2e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Peptidase_M15_4 PF13539.6 ABA81248.1 - 1.1e-07 32.2 0.1 5.2e-07 30.1 0.1 2.1 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase PG_binding_1 PF01471.18 ABA81248.1 - 7.1e-06 26.1 0.0 0.027 14.7 0.0 2.3 2 0 0 2 2 2 2 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA81248.1 - 0.0094 16.2 0.5 0.39 11.0 0.0 2.2 1 1 1 2 2 2 1 Predicted Peptidoglycan domain PG_binding_2 PF08823.11 ABA81248.1 - 0.02 15.2 0.1 0.71 10.2 0.0 2.2 2 0 0 2 2 2 0 Putative peptidoglycan binding domain ALF PF03752.13 ABA81248.1 - 0.038 14.0 1.5 0.038 14.0 1.5 2.4 2 1 0 2 2 2 0 Short repeats of unknown function HEPN_AbiU2 PF18734.1 ABA81250.2 - 0.0085 15.6 1.1 0.019 14.5 0.1 1.9 2 0 0 2 2 2 1 AbiU2 Nuc_deoxyrib_tr PF05014.15 ABA81253.1 - 1.1e-14 54.6 0.0 2e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase PfkB PF00294.24 ABA81253.1 - 0.0058 16.0 0.1 0.0087 15.4 0.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Nuc_deoxyri_tr2 PF15891.5 ABA81253.1 - 0.014 15.7 0.0 0.025 14.9 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase like LDcluster4 PF18306.1 ABA81253.1 - 0.13 11.9 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 SLOG cluster4 family MltA PF03562.17 ABA81253.1 - 0.18 11.6 0.0 9.4 5.9 0.0 2.1 2 0 0 2 2 2 0 MltA specific insert domain QueC PF06508.13 ABA81254.1 - 1.2e-31 109.9 0.0 1.3e-31 109.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 ABA81254.1 - 0.0085 15.7 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 ABA81254.1 - 0.2 10.4 0.0 0.28 9.9 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase HD_assoc PF13286.6 ABA81256.1 - 7e-20 71.4 0.3 8.5e-19 67.9 0.0 2.6 1 1 1 3 3 3 1 Phosphohydrolase-associated domain HD PF01966.22 ABA81256.1 - 2.8e-16 59.8 0.1 1.5e-15 57.5 0.1 2.4 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 ABA81256.1 - 0.034 13.6 0.0 0.081 12.4 0.0 1.6 2 0 0 2 2 2 0 HDOD domain U3snoRNP10 PF12397.8 ABA81256.1 - 0.042 14.2 0.0 0.26 11.6 0.0 2.0 1 1 1 2 2 2 0 U3 small nucleolar RNA-associated protein 10 HD_2 PF12917.7 ABA81256.1 - 0.098 12.4 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme AAA_18 PF13238.6 ABA81258.2 - 5.1e-07 30.3 0.0 1.4e-06 28.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA81258.2 - 3.3e-05 24.1 0.0 6e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 ABA81258.2 - 0.00019 20.8 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 ABA81258.2 - 0.00038 20.9 0.0 0.00058 20.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 ABA81258.2 - 0.00058 20.0 0.0 0.0098 16.0 0.0 2.3 1 1 0 1 1 1 1 Shikimate kinase ABC_tran PF00005.27 ABA81258.2 - 0.0014 19.2 0.0 0.0017 18.9 0.0 1.3 1 1 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 ABA81258.2 - 0.0014 19.0 0.1 0.0027 18.1 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 ABA81258.2 - 0.0017 18.8 0.1 0.011 16.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 ABA81258.2 - 0.0025 17.5 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 ABA81258.2 - 0.003 16.8 0.0 0.0042 16.3 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AGOG PF09171.10 ABA81258.2 - 0.0034 16.8 0.0 0.0054 16.1 0.0 1.3 1 0 0 1 1 1 1 N-glycosylase/DNA lyase AAA_5 PF07728.14 ABA81258.2 - 0.0035 17.4 0.0 0.0057 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 ABA81258.2 - 0.0036 17.6 0.1 0.0054 17.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA81258.2 - 0.004 17.4 0.0 0.014 15.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 ABA81258.2 - 0.0044 16.8 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 ABA81258.2 - 0.0067 16.4 0.3 0.023 14.6 0.1 1.9 2 0 0 2 2 2 1 NACHT domain IPT PF01745.16 ABA81258.2 - 0.009 15.4 0.0 0.023 14.1 0.0 1.7 1 1 1 2 2 2 1 Isopentenyl transferase PRK PF00485.18 ABA81258.2 - 0.0094 15.7 0.0 2.6 7.7 0.0 2.1 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 ABA81258.2 - 0.011 15.8 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.9 ABA81258.2 - 0.02 14.6 0.0 0.044 13.5 0.0 1.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 ABA81258.2 - 0.021 14.5 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Ploopntkinase3 PF18751.1 ABA81258.2 - 0.028 14.3 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 RNA_helicase PF00910.22 ABA81258.2 - 0.069 13.5 0.0 0.11 12.9 0.0 1.5 1 1 0 1 1 1 0 RNA helicase KTI12 PF08433.10 ABA81258.2 - 0.071 12.5 0.0 0.087 12.3 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 LRV PF01816.17 ABA81258.2 - 0.072 13.5 0.1 3.2 8.3 0.0 2.8 2 0 0 2 2 2 0 Leucine rich repeat variant AAA_25 PF13481.6 ABA81258.2 - 0.12 11.9 0.1 0.36 10.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 ABA81258.2 - 0.16 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 ABA81258.2 - 0.23 11.2 0.0 0.36 10.5 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain Peptidase_S49 PF01343.18 ABA81261.1 - 8.4e-19 68.0 0.8 2.3e-18 66.6 0.8 1.7 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 ABA81261.1 - 0.003 17.4 1.2 0.011 15.6 0.4 2.1 2 1 0 2 2 2 1 Clp protease SDH_sah PF01972.16 ABA81261.1 - 0.072 12.1 4.3 0.1 11.5 4.3 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase AlaE PF06610.13 ABA81262.1 - 2.6e-53 179.9 3.9 2.8e-53 179.7 3.9 1.0 1 0 0 1 1 1 1 L-alanine exporter Phage_capsid PF05065.13 ABA81263.1 - 5.5e-43 147.3 0.0 5.5e-43 147.3 0.0 1.8 2 0 0 2 2 2 1 Phage capsid family HTH_8 PF02954.19 ABA81263.1 - 0.0036 17.0 0.1 0.013 15.3 0.1 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family Phage_holin_3_3 PF16083.5 ABA81264.1 - 1.3e-12 47.6 0.6 1.8e-12 47.2 0.6 1.2 1 0 0 1 1 1 1 LydA holin phage, holin superfamily III DHDPS PF00701.22 ABA81265.1 - 6.5e-45 153.1 0.0 8e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Aldedh PF00171.22 ABA81266.1 - 2.9e-46 157.9 0.0 3.5e-42 144.5 0.0 2.0 2 0 0 2 2 2 2 Aldehyde dehydrogenase family Flavi_propep PF01570.17 ABA81266.1 - 0.27 11.2 0.4 0.61 10.1 0.1 1.7 2 0 0 2 2 2 0 Flavivirus polyprotein propeptide RraA-like PF03737.15 ABA81267.1 - 1.2e-28 100.1 0.1 1.6e-28 99.8 0.1 1.1 1 0 0 1 1 1 1 Aldolase/RraA HpcH_HpaI PF03328.14 ABA81268.1 - 2.3e-25 89.0 0.0 3.3e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family ADH_zinc_N PF00107.26 ABA81268.1 - 0.0011 19.0 0.1 0.94 9.5 0.0 2.5 2 0 0 2 2 2 2 Zinc-binding dehydrogenase AP_endonuc_2 PF01261.24 ABA81268.1 - 0.096 12.1 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel CN_hydrolase PF00795.22 ABA81269.1 - 4e-45 154.2 0.0 5e-45 153.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DctP PF03480.13 ABA81270.1 - 2.2e-85 286.5 0.1 2.5e-85 286.3 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 NMT1_2 PF13379.6 ABA81270.1 - 0.044 13.5 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 NMT1-like family Skp1 PF01466.19 ABA81270.1 - 0.052 13.7 0.3 0.11 12.6 0.3 1.6 1 1 0 1 1 1 0 Skp1 family, dimerisation domain MIEAP PF16026.5 ABA81270.1 - 0.14 12.3 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Mitochondria-eating protein DctM PF06808.12 ABA81271.1 - 2e-114 382.6 48.0 2.3e-114 382.5 48.0 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DcuC PF03606.15 ABA81271.1 - 0.0022 16.5 10.2 0.0022 16.5 10.2 3.6 2 2 1 3 3 3 2 C4-dicarboxylate anaerobic carrier DctQ PF04290.12 ABA81272.1 - 1.5e-20 73.5 15.1 1.8e-20 73.2 15.1 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DUF4027 PF13219.6 ABA81272.1 - 0.16 11.8 1.6 0.37 10.7 1.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4027) FCD PF07729.12 ABA81273.1 - 1.4e-27 96.5 7.4 3e-27 95.5 7.4 1.5 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 ABA81273.1 - 1.5e-19 69.4 0.1 4e-19 68.0 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 ABA81273.1 - 6.5e-05 22.8 0.0 0.00035 20.5 0.0 2.2 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 ABA81273.1 - 0.00015 22.1 0.0 0.00048 20.4 0.0 1.9 1 0 0 1 1 1 1 Transcriptional regulator DUF4142 PF13628.6 ABA81273.1 - 0.009 16.3 0.9 0.37 11.0 0.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4142) HTH_27 PF13463.6 ABA81273.1 - 0.013 15.9 0.1 0.079 13.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain FadR_C PF07840.12 ABA81273.1 - 0.014 15.3 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 FadR C-terminal domain HTH_29 PF13551.6 ABA81273.1 - 0.029 14.4 0.6 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_41 PF14502.6 ABA81273.1 - 0.097 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 ABA81273.1 - 0.17 11.8 4.1 3.3 7.6 0.0 2.9 3 0 0 3 3 3 0 MarR family Autoind_bind PF03472.15 ABA81275.1 - 4.1e-19 68.5 0.1 5.9e-19 68.0 0.1 1.2 1 0 0 1 1 1 1 Autoinducer binding domain GerE PF00196.19 ABA81275.1 - 5.1e-19 67.6 0.1 8.7e-19 66.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA81275.1 - 2.4e-07 30.3 0.1 7e-07 28.8 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA81275.1 - 0.0029 17.1 0.0 0.0063 16.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 ABA81275.1 - 0.0057 16.7 0.0 0.024 14.7 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 ABA81275.1 - 0.0057 16.4 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 ABA81275.1 - 0.01 16.0 0.3 0.051 13.7 0.0 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.6 ABA81275.1 - 0.013 15.0 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 ABA81275.1 - 0.022 14.6 0.0 0.074 13.0 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 ABA81275.1 - 0.05 13.4 0.1 0.7 9.8 0.1 2.5 1 1 1 2 2 2 0 Homeodomain-like domain GAF_2 PF13185.6 ABA81275.1 - 0.068 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 GAF domain HTH_29 PF13551.6 ABA81275.1 - 0.075 13.1 0.1 0.78 9.8 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.12 ABA81275.1 - 0.088 12.6 0.1 0.27 11.1 0.1 1.8 1 0 0 1 1 1 0 HTH DNA binding domain DUF11 PF01345.18 ABA81277.2 - 1e-147 480.9 244.7 1.1e-13 51.3 2.2 26.8 26 1 1 27 27 27 25 Domain of unknown function DUF11 CARDB PF07705.11 ABA81277.2 - 4.4e-39 132.8 86.4 0.005 17.1 0.1 22.3 23 1 0 23 23 23 16 CARDB TRAP_beta PF05753.14 ABA81277.2 - 3e-27 95.1 31.7 0.1 12.0 0.0 17.6 18 0 0 18 18 18 10 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.10 ABA81277.2 - 2.4e-20 73.0 0.0 6.9 6.7 0.0 14.0 15 0 0 15 15 15 2 Protein of unknown function (DUF2393) SdrD_B PF17210.3 ABA81277.2 - 2.1e-10 40.8 9.9 2.4e-10 40.6 0.0 4.5 4 0 0 4 4 4 1 SdrD B-like domain Integrin_alpha2 PF08441.12 ABA81277.2 - 0.0015 17.5 11.7 0.69 8.7 1.3 8.9 13 1 0 13 13 13 1 Integrin alpha Transglut_C PF00927.22 ABA81277.2 - 0.0019 18.3 2.1 1.1e+02 2.9 0.0 8.2 11 0 0 11 11 11 0 Transglutaminase family, C-terminal ig like domain Peptidase_M73 PF12389.8 ABA81277.2 - 0.34 10.7 18.3 80 3.0 0.0 10.2 13 0 0 13 13 13 0 Camelysin metallo-endopeptidase GFO_IDH_MocA PF01408.22 ABA81279.1 - 6.1e-21 75.5 0.1 1.1e-20 74.7 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 ABA81279.1 - 0.0048 17.4 0.2 0.011 16.2 0.1 1.7 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 ABA81279.1 - 0.02 14.9 0.5 0.19 11.7 0.0 2.5 3 0 0 3 3 3 0 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 ABA81279.1 - 0.065 13.9 0.0 0.47 11.1 0.0 2.2 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 ABA81280.1 - 1.1e-27 96.8 0.0 1.5e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 ABA81280.1 - 0.0015 18.2 0.0 0.0046 16.6 0.0 1.9 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus Phospholip_B PF04916.13 ABA81280.1 - 0.095 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Phospholipase B BPD_transp_1 PF00528.22 ABA81281.1 - 9.6e-17 61.3 16.4 9.6e-17 61.3 16.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Fumarate_red_D PF02313.17 ABA81281.1 - 2 8.5 9.8 1.3 9.1 0.4 2.6 2 0 0 2 2 2 0 Fumarate reductase subunit D BPD_transp_1 PF00528.22 ABA81282.1 - 1.6e-22 80.1 19.7 1.6e-22 80.1 19.7 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 ABA81283.1 - 5.7e-36 125.1 0.9 7.5e-36 124.7 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA81283.1 - 5.9e-31 108.3 0.3 7.8e-31 107.9 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA81283.1 - 0.021 14.3 0.0 5.5 6.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Abhydrolase_3 PF07859.13 ABA81284.1 - 9.5e-49 166.1 0.2 1.2e-48 165.8 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 ABA81284.1 - 0.0039 16.1 0.0 0.015 14.2 0.0 1.8 2 0 0 2 2 2 1 Carboxylesterase family Say1_Mug180 PF10340.9 ABA81284.1 - 0.0072 15.2 0.0 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 Steryl acetyl hydrolase GntR PF00392.21 ABA81285.1 - 2e-15 56.2 2.1 4.5e-15 55.1 2.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 ABA81285.1 - 3e-13 50.3 15.8 3e-13 50.3 15.8 1.9 1 1 1 2 2 2 1 FCD domain TFIIE_alpha PF02002.17 ABA81285.1 - 0.00082 19.2 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.19 ABA81285.1 - 0.0041 17.3 0.0 0.0081 16.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 ABA81285.1 - 0.011 15.6 0.3 0.03 14.2 0.3 1.8 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 ABA81285.1 - 0.024 14.4 3.0 0.035 13.9 0.1 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain PaaX PF07848.12 ABA81285.1 - 0.024 14.8 0.1 0.052 13.8 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_12 PF08461.10 ABA81285.1 - 0.038 13.9 3.1 3 7.8 0.3 2.7 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 ABA81285.1 - 0.04 13.7 2.3 0.6 10.0 0.2 2.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 ABA81285.1 - 0.042 13.4 0.1 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Focal_AT PF03623.13 ABA81285.1 - 0.055 13.4 0.1 12 5.9 0.0 2.3 2 0 0 2 2 2 0 Focal adhesion targeting region MarR PF01047.22 ABA81285.1 - 0.062 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 ABA81285.1 - 0.068 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phosphorylase PF00343.20 ABA81285.1 - 0.23 9.7 0.1 0.31 9.3 0.1 1.2 1 0 0 1 1 1 0 Carbohydrate phosphorylase HTH_20 PF12840.7 ABA81285.1 - 2.1 8.5 8.3 3.8 7.6 0.8 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain ABC_tran PF00005.27 ABA81286.1 - 5e-31 108.1 0.0 7.6e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 ABA81286.1 - 3.9e-09 37.2 0.3 1.5e-08 35.3 0.3 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 ABA81286.1 - 1.2e-07 31.9 0.0 0.00095 19.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 ABA81286.1 - 1.1e-06 28.7 0.1 3.1e-06 27.3 0.1 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 ABA81286.1 - 0.00079 18.9 0.0 0.0036 16.8 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 ABA81286.1 - 0.00092 19.5 0.2 0.03 14.6 0.0 2.9 3 0 0 3 3 2 1 TOBE domain RsgA_GTPase PF03193.16 ABA81286.1 - 0.0013 18.7 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 ABA81286.1 - 0.0047 16.6 0.0 0.0091 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81286.1 - 0.0085 16.5 0.1 0.021 15.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain MIT_C PF16565.5 ABA81286.1 - 0.013 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_22 PF13401.6 ABA81286.1 - 0.021 15.1 0.1 0.051 13.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 ABA81286.1 - 0.024 15.1 0.0 0.055 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 ABA81286.1 - 0.027 14.4 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 ABA81286.1 - 0.04 14.4 0.1 0.13 12.6 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 ABA81286.1 - 0.097 12.8 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 ABA81286.1 - 0.11 13.0 0.0 0.2 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 ABA81286.1 - 0.11 12.6 0.2 0.18 11.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 ABA81286.1 - 0.12 11.5 0.2 0.21 10.7 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain CysA_C_terminal PF17850.1 ABA81286.1 - 0.16 12.5 0.2 0.16 12.5 0.2 2.6 3 0 0 3 3 2 0 CysA C-terminal regulatory domain AAA_15 PF13175.6 ABA81286.1 - 0.2 11.3 0.0 0.53 9.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain SIP PF04954.13 ABA81287.1 - 2.8e-31 108.5 0.8 2.8e-31 108.5 0.8 1.8 2 1 0 2 2 2 1 Siderophore-interacting protein FAD_binding_9 PF08021.11 ABA81287.1 - 1e-14 54.8 0.0 2e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Siderophore-interacting FAD-binding domain DUF2218 PF09981.9 ABA81287.1 - 0.037 14.4 0.0 0.095 13.1 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) Glyco_trans_1_2 PF13524.6 ABA81288.1 - 2.2e-08 34.4 0.0 4.6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA81288.1 - 0.005 16.9 1.2 0.28 11.2 0.2 3.1 3 0 0 3 3 3 1 Glycosyltransferase Family 4 TetR_N PF00440.23 ABA81289.1 - 7.3e-07 28.9 0.2 7.3e-07 28.9 0.2 2.1 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family TetR_C_15 PF17918.1 ABA81289.1 - 0.49 11.2 7.4 2.5 8.9 2.7 2.6 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 ABA81289.1 - 0.75 10.0 12.6 0.038 14.2 5.9 2.3 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Oxidored_FMN PF00724.20 ABA81290.2 - 1.7e-51 175.5 0.0 2.6e-51 174.9 0.0 1.3 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 ABA81290.2 - 4.9e-07 29.3 0.9 5e-06 25.9 0.3 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA81290.2 - 1.2e-06 28.6 1.9 3.7e-06 27.1 0.7 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 ABA81290.2 - 1.9e-05 23.6 2.1 2.1e-05 23.4 1.0 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 ABA81290.2 - 0.00015 22.3 0.5 0.00099 19.6 0.4 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA81290.2 - 0.00055 19.1 5.6 0.024 13.8 3.9 2.4 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 ABA81290.2 - 0.0015 17.8 2.4 0.0027 17.0 0.3 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 ABA81290.2 - 0.0028 17.1 3.6 0.024 14.0 2.5 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 ABA81290.2 - 0.0037 16.5 0.2 0.0088 15.3 0.2 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 ABA81290.2 - 0.0084 15.2 3.1 0.013 14.6 0.5 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 ABA81290.2 - 0.01 15.1 0.2 0.019 14.2 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain Phage_Coat_B PF05356.11 ABA81290.2 - 0.011 15.6 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Phage Coat protein B DAO PF01266.24 ABA81290.2 - 0.027 14.0 5.2 0.1 12.2 5.1 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 ABA81290.2 - 0.037 13.3 1.2 0.37 10.0 0.5 2.5 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 ABA81290.2 - 0.05 14.1 0.9 4.1 7.9 0.1 3.2 3 0 0 3 3 3 0 XdhC Rossmann domain 3HCDH_N PF02737.18 ABA81290.2 - 0.17 11.7 1.4 0.37 10.7 0.6 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 ABA81290.2 - 0.19 12.2 0.2 3.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding Acetyltransf_6 PF13480.7 ABA81292.1 - 3.3e-09 37.0 5.8 9.3e-09 35.6 2.3 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 ABA81292.1 - 0.0012 17.8 0.0 0.012 14.6 0.0 2.1 3 0 0 3 3 3 1 FemAB family Autoind_bind PF03472.15 ABA81293.2 - 2.6e-10 40.0 0.4 5.3e-10 39.0 0.4 1.5 1 0 0 1 1 1 1 Autoinducer binding domain GerE PF00196.19 ABA81293.2 - 3.5e-10 39.3 0.1 6.9e-10 38.3 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA81293.2 - 5.7e-07 29.1 0.1 2e-06 27.4 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 ABA81293.2 - 8.3e-07 28.4 0.1 6.9e-06 25.5 0.0 2.5 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 ABA81293.2 - 0.00046 19.9 0.5 0.0025 17.6 0.1 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 ABA81293.2 - 0.00066 19.8 0.1 0.0033 17.5 0.1 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 ABA81293.2 - 0.0013 18.2 0.0 0.0095 15.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 ABA81293.2 - 0.0048 16.9 0.1 0.012 15.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 ABA81293.2 - 0.006 16.6 0.3 0.014 15.4 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.6 ABA81293.2 - 0.02 14.7 2.4 0.053 13.4 0.0 2.8 3 1 1 4 4 4 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA81293.2 - 0.022 14.6 0.3 0.1 12.5 0.0 2.3 2 1 0 2 2 2 0 MarR family HTH_7 PF02796.15 ABA81293.2 - 0.025 14.7 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_IclR PF09339.10 ABA81293.2 - 0.037 13.8 0.1 6.6 6.6 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF2383 PF09537.10 ABA81294.1 - 2.3e-23 82.6 0.4 3.1e-23 82.2 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF4142 PF13628.6 ABA81294.1 - 0.00056 20.2 0.0 0.00098 19.4 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4142) FUSC PF04632.12 ABA81294.1 - 0.021 13.4 2.0 0.023 13.2 2.0 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family VWA_3 PF13768.6 ABA81294.1 - 0.045 13.7 0.0 0.11 12.4 0.0 1.6 1 1 1 2 2 2 0 von Willebrand factor type A domain Peripla_BP_3 PF13377.6 ABA81296.1 - 6.8e-34 117.6 0.2 1.2e-33 116.8 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 ABA81296.1 - 1.2e-28 100.4 0.0 1.5e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 ABA81296.1 - 2.8e-15 55.8 0.2 6.1e-15 54.7 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 ABA81296.1 - 8.6e-14 51.7 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 ABA81296.1 - 0.00022 21.2 0.0 0.00053 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 ABA81296.1 - 0.00023 21.4 2.0 0.00023 21.4 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 ABA81296.1 - 0.02 14.7 0.0 0.068 13.0 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 ABA81296.1 - 0.025 14.0 0.0 0.064 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TetR_N PF00440.23 ABA81296.1 - 0.06 13.1 0.1 0.68 9.8 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 ABA81296.1 - 0.063 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_26 PF13443.6 ABA81296.1 - 0.19 12.2 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Peripla_BP_4 PF13407.6 ABA81297.1 - 1e-50 172.7 25.2 1.3e-50 172.4 25.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 ABA81297.1 - 1.7e-13 50.7 5.9 2.1e-13 50.3 5.9 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 ABA81297.1 - 2.9e-11 44.0 2.2 1.9e-08 34.8 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein-like domain ABC_tran PF00005.27 ABA81298.1 - 1.1e-29 103.7 0.0 1.5e-29 103.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81298.1 - 6.3e-10 39.4 0.1 6.5e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 ABA81298.1 - 0.0002 20.3 1.1 0.0033 16.3 0.2 2.6 2 1 0 2 2 2 1 Predicted ATPase of the ABC class SMC_N PF02463.19 ABA81298.1 - 0.0018 17.8 0.1 0.013 14.9 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 ABA81298.1 - 0.036 14.5 0.1 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 ABA81298.1 - 0.093 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_lid_7 PF17867.1 ABA81298.1 - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Midasin AAA lid domain AAA_13 PF13166.6 ABA81298.1 - 0.12 11.0 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 ABA81299.1 - 2.1e-43 148.4 47.6 2.1e-43 148.4 47.6 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component UspB PF10625.9 ABA81299.1 - 0.011 15.7 1.4 0.025 14.6 1.4 1.6 1 0 0 1 1 1 0 Universal stress protein B (UspB) PTE PF02126.18 ABA81300.1 - 1.5e-63 215.0 0.0 1.9e-63 214.7 0.0 1.1 1 0 0 1 1 1 1 Phosphotriesterase family Amidohydro_2 PF04909.14 ABA81300.1 - 0.087 12.6 0.9 0.17 11.6 0.9 1.6 1 1 0 1 1 1 0 Amidohydrolase GATase1_like PF07090.11 ABA81301.1 - 1.5e-132 440.6 0.0 1.7e-132 440.4 0.0 1.0 1 0 0 1 1 1 1 Putative glutamine amidotransferase PfkB PF00294.24 ABA81302.1 - 8e-37 127.2 4.4 9.6e-37 126.9 4.4 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CoA_binding_2 PF13380.6 ABA81302.1 - 0.036 14.5 0.5 5.2 7.6 0.1 2.4 2 1 0 2 2 2 0 CoA binding domain BtpA PF03437.15 ABA81303.1 - 1.8e-66 224.2 0.0 2e-66 224.0 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 ABA81303.1 - 0.086 11.7 0.3 0.14 11.0 0.3 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain TENA_THI-4 PF03070.16 ABA81304.1 - 1.6e-12 47.7 0.0 2e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Peptidase_M20 PF01546.28 ABA81305.1 - 1.2e-30 106.8 0.3 1.5e-30 106.5 0.3 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 ABA81305.1 - 7.2e-20 70.9 0.1 1.2e-19 70.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 ABA81305.1 - 0.0058 16.3 0.0 0.015 15.0 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M28 ABC_tran PF00005.27 ABA81306.1 - 2.9e-33 115.3 0.0 4.6e-33 114.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81306.1 - 2.4e-10 40.7 1.3 0.0002 21.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 ABA81306.1 - 3.7e-05 23.8 0.1 0.00025 21.2 0.1 2.4 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 ABA81306.1 - 0.00062 19.3 0.0 0.067 12.6 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 ABA81306.1 - 0.0032 17.9 0.0 0.035 14.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 ABA81306.1 - 0.0042 16.8 0.5 0.53 10.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 ABA81306.1 - 0.006 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 ABA81306.1 - 0.012 15.2 0.1 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 ABA81306.1 - 0.013 15.7 0.3 0.043 14.1 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 ABA81306.1 - 0.016 15.7 0.0 0.024 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 ABA81306.1 - 0.017 15.5 0.9 0.035 14.5 0.8 1.7 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 ABA81306.1 - 0.019 14.9 0.1 0.047 13.6 0.0 1.7 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.6 ABA81306.1 - 0.029 14.6 0.2 0.23 11.7 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 ABA81306.1 - 0.04 13.8 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 ABA81306.1 - 0.044 13.5 0.4 0.11 12.2 0.3 1.8 1 1 1 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 ABA81306.1 - 0.045 13.7 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 ABA81306.1 - 0.068 13.4 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA81306.1 - 0.069 13.7 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 ABA81306.1 - 0.079 11.7 0.2 2.1 7.0 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Roc PF08477.13 ABA81306.1 - 0.1 12.8 0.0 4 7.7 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 ABA81306.1 - 0.15 12.2 0.1 0.35 11.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain T2SSE PF00437.20 ABA81306.1 - 0.15 11.1 0.1 0.35 9.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 ABA81306.1 - 0.18 11.7 0.0 1.1 9.2 0.0 2.0 2 0 0 2 2 2 0 NTPase SBP_bac_11 PF13531.6 ABA81307.1 - 6.9e-40 137.2 1.3 9.4e-40 136.8 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA81307.1 - 9.3e-14 52.1 5.7 9.3e-14 52.1 5.7 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 ABA81307.1 - 6.1e-06 25.8 0.1 1.1e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 ABA81307.1 - 0.043 12.9 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain PAD_porph PF04371.15 ABA81307.1 - 0.068 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Porphyromonas-type peptidyl-arginine deiminase BPD_transp_1 PF00528.22 ABA81308.1 - 3e-23 82.5 17.7 3e-23 82.5 17.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA81309.1 - 3e-16 59.7 12.6 3e-16 59.7 12.6 2.0 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component LacI PF00356.21 ABA81310.1 - 5.9e-12 45.2 0.2 1.1e-11 44.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 ABA81310.1 - 2.2e-11 43.9 0.0 3.1e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_3 PF13377.6 ABA81310.1 - 1e-09 39.0 1.3 5.5e-08 33.3 0.1 2.9 2 1 1 3 3 3 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 ABA81310.1 - 2.2e-07 30.6 0.0 2.5e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family HTH_3 PF01381.22 ABA81310.1 - 0.042 13.9 0.3 0.091 12.8 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix Peripla_BP_4 PF13407.6 ABA81311.1 - 2.9e-55 187.6 11.9 3.8e-55 187.3 11.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 ABA81311.1 - 8.4e-06 25.4 0.9 1e-05 25.1 0.9 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 ABA81311.1 - 8.1e-05 23.0 0.6 0.00062 20.1 0.1 2.2 1 1 1 2 2 2 1 Periplasmic binding protein-like domain ABC_tran PF00005.27 ABA81312.1 - 2.2e-32 112.5 0.0 3.1e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81312.1 - 2.8e-11 43.8 0.1 5.3e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81312.1 - 6.4e-07 29.0 0.0 0.003 17.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81312.1 - 0.00023 20.8 0.0 0.00055 19.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 ABA81312.1 - 0.001 19.0 0.1 0.0026 17.7 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 ABA81312.1 - 0.0034 17.1 0.8 0.027 14.2 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA81312.1 - 0.0057 17.2 0.0 0.0096 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA81312.1 - 0.0072 16.1 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Dynamin_N PF00350.23 ABA81312.1 - 0.013 15.5 0.1 0.043 13.9 0.0 1.9 3 0 0 3 3 3 0 Dynamin family TsaE PF02367.17 ABA81312.1 - 0.014 15.4 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 ABA81312.1 - 0.015 15.7 0.1 0.041 14.3 0.1 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 ABA81312.1 - 0.022 14.3 0.5 0.14 11.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 ABA81312.1 - 0.023 14.0 0.0 0.18 11.1 0.1 2.1 2 0 0 2 2 2 0 Zeta toxin ABC_ATPase PF09818.9 ABA81312.1 - 0.03 13.1 1.4 5.6 5.6 0.2 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 ABA81312.1 - 0.036 14.5 0.5 3.9 7.9 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 ABA81312.1 - 0.042 13.0 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MMR_HSR1 PF01926.23 ABA81312.1 - 0.044 13.9 0.0 0.091 12.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 ABA81312.1 - 0.081 13.1 0.2 0.13 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA81312.1 - 0.089 12.7 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain DLIC PF05783.11 ABA81312.1 - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_10 PF12846.7 ABA81312.1 - 0.12 11.3 0.1 3 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.6 ABA81312.1 - 0.12 12.7 0.5 0.33 11.2 0.1 2.1 2 1 0 2 2 1 0 AAA domain EndoU_bacteria PF14436.6 ABA81312.1 - 0.19 12.1 0.0 0.31 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial EndoU nuclease BPD_transp_2 PF02653.16 ABA81313.2 - 8.1e-39 133.4 52.8 6.2e-38 130.5 52.8 2.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component adh_short PF00106.25 ABA81314.1 - 6e-53 179.2 0.0 7.6e-53 178.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA81314.1 - 1.2e-40 139.5 0.0 1.5e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 ABA81314.1 - 3.8e-08 33.5 0.0 5.5e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 KR domain FGGY_C PF02782.16 ABA81315.1 - 3.1e-51 173.9 2.6 4.5e-51 173.4 2.6 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 ABA81315.1 - 6.2e-27 94.7 0.0 9.6e-27 94.1 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 ABA81315.1 - 0.0036 16.8 0.0 0.0097 15.4 0.0 1.4 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family TOBE PF03459.17 ABA81315.1 - 0.054 13.8 0.9 2.6 8.4 0.1 2.7 2 0 0 2 2 2 0 TOBE domain Pyr_redox_2 PF07992.14 ABA81317.1 - 3.6e-49 167.6 0.1 4.5e-49 167.3 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase cNMP_binding PF00027.29 ABA81317.1 - 8.1e-20 70.7 0.0 1.8e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Pyr_redox PF00070.27 ABA81317.1 - 3.1e-12 46.9 2.6 1.4e-08 35.1 0.4 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 ABA81317.1 - 0.0016 18.7 0.6 0.076 13.3 0.2 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 ABA81317.1 - 0.0022 16.9 0.1 0.0039 16.1 0.0 1.4 2 0 0 2 2 2 1 Tryptophan halogenase DAO PF01266.24 ABA81317.1 - 0.041 13.5 4.2 5.3 6.5 0.1 3.8 4 0 0 4 4 4 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 ABA81317.1 - 0.31 10.3 2.3 2.9 7.1 0.9 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 ABA81317.1 - 8 6.4 7.0 9.2 6.2 0.0 3.6 3 1 1 4 4 4 0 FAD-NAD(P)-binding MCPsignal PF00015.21 ABA81318.1 - 1.5e-32 112.8 20.9 1.5e-32 112.8 20.9 3.0 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 ABA81318.1 - 3.8e-19 68.9 6.2 3.8e-19 68.9 6.2 3.7 4 1 0 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 ABA81318.1 - 3.6e-06 27.3 0.7 3.6e-06 27.3 0.7 3.8 4 0 0 4 4 4 1 HAMP domain PhaG_MnhG_YufB PF03334.14 ABA81319.1 - 1e-20 73.8 9.8 1.3e-20 73.4 9.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit CcmD PF04995.14 ABA81319.1 - 0.0038 17.3 0.2 0.0038 17.3 0.2 2.2 2 2 0 2 2 2 1 Heme exporter protein D (CcmD) Frizzled PF01534.17 ABA81319.1 - 0.67 8.9 2.8 0.72 8.8 0.3 1.8 1 1 0 2 2 2 0 Frizzled/Smoothened family membrane region DUF202 PF02656.15 ABA81319.1 - 6.5 7.3 7.4 11 6.5 6.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) MrpF_PhaF PF04066.13 ABA81320.1 - 7e-18 64.8 7.9 7e-18 64.8 7.9 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 ABA81321.1 - 3.1e-33 114.6 1.4 3.5e-33 114.4 1.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 ABA81322.2 - 3.6e-27 95.3 27.5 3.6e-27 95.3 27.5 2.3 2 1 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 ABA81322.2 - 0.0043 16.4 11.5 0.0043 16.4 11.5 3.3 2 1 2 4 4 4 2 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 ABA81322.2 - 0.12 12.4 0.0 0.12 12.4 0.0 2.2 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 ABA81323.1 - 2.7e-26 91.2 0.3 3.3e-26 91.0 0.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2749 PF10907.8 ABA81323.1 - 0.0027 17.8 1.2 1.1 9.5 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2749) TauE PF01925.19 ABA81323.1 - 0.11 12.1 8.1 0.2 11.3 7.9 1.5 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE Proton_antipo_M PF00361.20 ABA81324.1 - 6.8e-63 212.6 18.4 6.8e-63 212.6 18.4 2.4 2 0 0 2 2 2 1 Proton-conducting membrane transporter MnhB PF04039.13 ABA81324.1 - 2.2e-31 108.8 12.5 2.2e-31 108.8 12.5 7.7 4 2 6 10 10 10 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 ABA81324.1 - 6.1e-20 71.1 5.9 6.1e-20 71.1 5.9 7.1 9 0 0 9 9 9 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 ABA81324.1 - 8.8e-08 32.1 0.4 3.9e-07 30.0 0.4 2.3 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AIRS_C PF02769.22 ABA81325.1 - 1.4e-26 93.4 0.2 2.3e-26 92.8 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 ABA81325.1 - 1.3e-20 73.9 0.9 3.2e-20 72.6 0.9 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TAT_signal PF10518.9 ABA81326.1 - 0.015 15.2 7.1 0.015 15.2 7.1 2.0 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence GMC_oxred_C PF05199.13 ABA81327.1 - 2.2e-15 57.5 0.3 4.2e-15 56.5 0.3 1.5 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 ABA81327.1 - 8.4e-07 28.6 0.0 3e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 GMC oxidoreductase NAD_binding_8 PF13450.6 ABA81327.1 - 0.0095 16.1 0.0 0.095 13.0 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Qn_am_d_aII PF14930.6 ABA81327.1 - 0.097 13.0 0.0 0.26 11.6 0.0 1.7 2 0 0 2 2 2 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain II Polysacc_synt_3 PF13440.6 ABA81328.2 - 1.6e-78 263.9 0.2 1.6e-78 263.9 0.2 1.7 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 ABA81328.2 - 2.1e-35 122.4 6.6 2.1e-35 122.4 6.6 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Pribosyltran PF00156.27 ABA81329.1 - 0.0013 18.2 0.0 0.003 17.1 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Glycos_transf_1 PF00534.20 ABA81330.1 - 2.2e-14 53.4 0.0 3.7e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA81330.1 - 6.9e-14 52.4 0.0 1.5e-13 51.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA81330.1 - 6.6e-13 49.0 0.1 1.5e-12 47.8 0.1 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 ABA81330.1 - 4.9e-08 33.6 4.4 4.9e-08 33.6 4.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 ABA81330.1 - 1e-05 25.8 0.3 2.3e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Pribosyltran PF00156.27 ABA81331.1 - 0.00025 20.6 0.1 0.0062 16.1 0.1 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Acyl_transf_3 PF01757.22 ABA81332.1 - 8.4e-30 104.0 25.0 1.9e-29 102.8 25.0 1.5 1 1 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.12 ABA81332.1 - 4.5e-05 23.1 1.6 4.5e-05 23.1 1.6 2.7 3 1 0 3 3 3 1 Protein of unknown function (DUF1624) HisKA_2 PF07568.12 ABA81333.1 - 3.3e-14 52.7 0.0 5.4e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase DUF4118 PF13493.6 ABA81333.1 - 3.7e-09 36.3 17.0 6.7e-09 35.5 17.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c PF02518.26 ABA81333.1 - 4.3e-09 36.9 0.0 9e-09 35.8 0.0 1.5 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 ABA81333.1 - 4.9e-05 23.3 0.0 0.0001 22.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 ABA81333.1 - 0.0018 18.9 1.3 0.0022 18.6 0.1 1.8 2 0 0 2 2 2 1 HWE histidine kinase Dynamin_N PF00350.23 ABA81334.1 - 2.8e-10 40.5 0.0 1.2e-09 38.5 0.0 1.9 1 1 0 1 1 1 1 Dynamin family MMR_HSR1 PF01926.23 ABA81334.1 - 0.00031 20.8 0.0 0.00059 19.9 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 ABA81334.1 - 0.087 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit T2SSE PF00437.20 ABA81334.1 - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Dynamin_N PF00350.23 ABA81335.2 - 1.3e-12 48.1 0.0 3.3e-12 46.8 0.0 1.6 1 1 0 1 1 1 1 Dynamin family MMR_HSR1 PF01926.23 ABA81335.2 - 3e-06 27.3 0.0 0.0001 22.4 0.0 2.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 ABA81335.2 - 4.1e-05 23.2 0.0 0.016 14.7 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 ABA81335.2 - 0.024 14.5 0.1 0.5 10.2 0.0 2.7 2 1 1 3 3 3 0 RsgA GTPase DUF4054 PF13262.6 ABA81335.2 - 0.086 12.9 2.5 0.23 11.5 2.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF4054) FeoB_N PF02421.18 ABA81335.2 - 0.23 11.0 0.4 2.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B Flavodoxin_2 PF02525.17 ABA81336.1 - 3.3e-39 134.7 0.0 3.7e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 ABA81336.1 - 5.7e-11 42.4 0.0 7.3e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Lipase_GDSL_2 PF13472.6 ABA81336.1 - 0.0077 16.6 0.1 0.066 13.6 0.0 2.0 1 1 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family GST_C_2 PF13410.6 ABA81338.1 - 9.9e-08 31.9 0.4 9.9e-08 31.9 0.4 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 ABA81338.1 - 1.3e-06 28.6 0.0 2.2e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 ABA81338.1 - 5.3e-06 26.7 0.0 1.1e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 ABA81338.1 - 0.00019 21.7 0.0 0.00036 20.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 ABA81338.1 - 0.00027 21.1 0.0 0.00047 20.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 ABA81338.1 - 0.0038 17.6 0.0 0.0086 16.5 0.0 1.7 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 ABA81338.1 - 0.13 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DeoRC PF00455.22 ABA81339.2 - 5.9e-43 146.6 0.0 9.2e-43 145.9 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 ABA81339.2 - 0.00055 19.6 0.1 0.0016 18.1 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Peripla_BP_4 PF13407.6 ABA81340.1 - 2.1e-53 181.5 6.1 2.6e-53 181.2 6.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 ABA81340.1 - 2.1e-07 30.6 0.1 2.9e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_tran PF00005.27 ABA81341.1 - 2.8e-47 160.7 0.0 6.6e-29 101.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_29 PF13555.6 ABA81341.1 - 6.8e-05 22.5 0.1 0.00054 19.6 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_21 PF13304.6 ABA81341.1 - 0.00025 21.0 0.0 0.02 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA81341.1 - 0.00069 20.0 0.2 0.62 10.4 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 ABA81341.1 - 0.0017 17.9 1.4 0.61 9.5 0.1 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 ABA81341.1 - 0.015 15.1 1.4 0.14 11.8 0.6 2.6 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 ABA81341.1 - 0.021 15.0 0.8 9.2 6.4 0.1 3.3 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 ABA81341.1 - 0.028 15.0 0.2 8.9 6.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 ABA81341.1 - 0.028 13.8 0.6 11 5.4 0.1 2.8 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 ABA81341.1 - 0.04 14.4 0.0 0.21 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 ABA81341.1 - 0.079 12.9 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 ABA81341.1 - 0.1 12.3 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 ABA81341.1 - 0.17 12.1 1.2 6 7.1 0.5 3.0 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 ABA81341.1 - 0.21 11.6 0.0 19 5.2 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 ABA81341.1 - 0.22 11.4 0.3 1.4 8.8 0.0 2.3 3 0 0 3 3 3 0 RsgA GTPase BPD_transp_2 PF02653.16 ABA81342.1 - 9.9e-41 139.7 35.0 9.9e-41 139.7 35.0 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF543 PF04418.12 ABA81342.1 - 1.4 9.0 4.9 0.66 10.0 0.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF543) JAMP PF05571.12 ABA81342.1 - 3.3 7.2 5.9 0.28 10.8 0.1 1.9 2 0 0 2 2 2 0 JNK1/MAPK8-associated membrane protein BPD_transp_2 PF02653.16 ABA81343.1 - 2e-31 109.2 51.6 2e-31 109.2 51.6 1.4 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF543 PF04418.12 ABA81343.1 - 7.4 6.6 10.9 0.26 11.3 2.8 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF543) DUF4432 PF14486.6 ABA81344.1 - 1.6e-19 69.8 0.0 5.8e-19 68.0 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4432) PfkB PF00294.24 ABA81345.1 - 5.9e-65 219.5 1.6 7.5e-65 219.2 1.6 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 ABA81345.1 - 3.7e-07 29.8 0.0 6.2e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HEM4 PF02602.15 ABA81345.1 - 0.0015 18.0 0.1 0.0025 17.2 0.1 1.4 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DeoC PF01791.9 ABA81346.1 - 1.5e-21 77.1 0.0 1.8e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Aldedh PF00171.22 ABA81347.1 - 1.2e-196 653.8 4.2 3.3e-158 527.0 1.1 2.0 2 0 0 2 2 2 2 Aldehyde dehydrogenase family DUF1487 PF07368.11 ABA81347.1 - 6.7e-07 29.0 0.0 0.019 14.5 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) SBP_bac_3 PF00497.20 ABA81348.1 - 3.9e-52 176.9 0.1 4.8e-52 176.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 ABA81348.1 - 8.6e-06 25.8 0.1 1.3e-05 25.3 0.1 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Lig_chan-Glu_bd PF10613.9 ABA81348.1 - 0.014 15.6 0.1 0.11 12.7 0.0 2.3 2 1 0 2 2 2 0 Ligated ion channel L-glutamate- and glycine-binding site Peptidase_C39 PF03412.15 ABA81348.1 - 0.052 13.4 0.0 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 Peptidase C39 family Phosphonate-bd PF12974.7 ABA81348.1 - 0.068 12.7 0.1 8.1 6.0 0.0 2.4 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Arginase PF00491.21 ABA81349.1 - 1.5e-77 260.9 0.0 1.9e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.7 ABA81349.1 - 0.098 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 UPF0489 domain BPD_transp_1 PF00528.22 ABA81350.1 - 2.2e-18 66.6 14.9 2.2e-18 66.6 14.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA81351.1 - 2.6e-32 112.2 0.0 3.4e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81351.1 - 4.2e-09 36.6 0.0 0.00026 20.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81351.1 - 1.2e-07 31.4 0.8 2.7e-06 27.0 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81351.1 - 3.9e-05 23.3 0.5 7.8e-05 22.3 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 ABA81351.1 - 0.0055 16.1 0.7 0.035 13.5 0.1 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_23 PF13476.6 ABA81351.1 - 0.014 15.9 0.1 0.036 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA81351.1 - 0.015 15.3 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.20 ABA81351.1 - 0.016 14.4 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ABC_ATPase PF09818.9 ABA81351.1 - 0.016 14.0 0.0 3.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 ABA81351.1 - 0.029 13.6 0.2 0.35 10.0 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 ABA81351.1 - 0.03 14.7 0.3 0.086 13.2 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 ABA81351.1 - 0.046 13.9 0.1 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA81351.1 - 0.047 13.6 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 ABA81351.1 - 0.053 13.2 0.0 0.088 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 ABA81351.1 - 0.057 13.7 1.0 0.53 10.5 1.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 ABA81351.1 - 0.072 13.3 0.9 0.66 10.2 0.2 2.6 2 2 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 ABA81351.1 - 0.081 13.2 0.3 0.97 9.7 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 ABA81351.1 - 0.11 12.2 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 ABA81351.1 - 0.18 11.5 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF1989 PF09347.10 ABA81352.1 - 2.6e-51 173.6 0.0 3.1e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1989) Peptidase_M24 PF00557.24 ABA81353.1 - 5.7e-22 78.4 0.1 8.1e-22 77.9 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 ABA81353.1 - 3.5e-05 24.5 0.0 6.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain LysR_substrate PF03466.20 ABA81354.1 - 5e-35 120.8 2.1 8.3e-35 120.1 2.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81354.1 - 1.1e-22 79.7 3.4 2e-22 78.9 1.4 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Beta-lactamase PF00144.24 ABA81355.1 - 1.5e-67 228.2 1.6 1.9e-67 227.9 1.6 1.0 1 0 0 1 1 1 1 Beta-lactamase Hemerythrin PF01814.23 ABA81356.2 - 0.0066 17.1 0.2 0.017 15.7 0.0 2.0 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain DUF4365 PF14280.6 ABA81360.1 - 2.4e-27 95.6 0.0 3.7e-27 95.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4365) LPD3 PF18798.1 ABA81360.1 - 0.00016 21.9 0.0 0.00026 21.2 0.0 1.4 1 0 0 1 1 1 1 Large polyvalent protein-associated domain 3 RES PF08808.11 ABA81361.1 - 1.2e-25 90.3 0.6 5.6e-25 88.1 0.6 2.1 1 1 0 1 1 1 1 RES domain HEPN_RES_NTD1 PF18870.1 ABA81361.1 - 3.3e-07 30.6 0.8 1.6e-06 28.4 0.8 2.0 1 1 0 1 1 1 1 HEPN/RES N-terminal domain 1 UvrD-helicase PF00580.21 ABA81362.2 - 2.7e-09 37.0 0.1 1.2e-06 28.2 0.0 2.1 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 ABA81362.2 - 6e-09 36.4 0.0 1.3e-08 35.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 ABA81362.2 - 5e-08 33.0 0.0 5.3e-06 26.3 0.0 2.6 2 1 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 ABA81362.2 - 3.7e-05 23.5 0.1 0.00049 19.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA81363.1 - 1.1e-24 87.9 1.0 2.3e-13 50.6 0.0 2.5 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 ABA81363.1 - 4.3e-15 56.8 0.0 9.8e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 ABA81363.1 - 2e-12 47.5 1.6 1.8e-06 28.0 0.3 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81363.1 - 4.4e-09 36.1 0.1 3.8e-06 26.5 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 ABA81363.1 - 3.7e-05 23.4 0.0 7.6e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA81363.1 - 0.0001 22.0 0.0 0.00022 20.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.8 ABA81363.1 - 0.0005 19.4 0.0 0.0016 17.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) ABC_tran PF00005.27 ABA81363.1 - 0.0075 16.8 0.1 0.036 14.6 0.0 2.2 3 0 0 3 3 3 1 ABC transporter ABC_ATPase PF09818.9 ABA81363.1 - 0.035 12.9 0.1 0.098 11.4 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 ABA81363.1 - 0.055 13.4 0.4 1.4 8.8 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 ABA81363.1 - 0.098 12.9 0.0 18 5.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain DNA_methylase PF00145.17 ABA81365.1 - 1.9e-63 214.9 0.0 2.5e-63 214.4 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 ABA81365.1 - 0.00012 21.7 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Vsr PF03852.15 ABA81366.1 - 1e-29 102.2 0.0 1.3e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 DNA mismatch endonuclease Vsr MTES_1575 PF18741.1 ABA81366.1 - 0.081 13.1 0.0 0.21 11.8 0.1 1.7 2 0 0 2 2 2 0 REase_MTES_1575 YdjM PF04307.14 ABA81367.1 - 2.9 7.2 10.6 0.35 10.1 5.5 1.9 1 1 1 2 2 2 0 LexA-binding, inner membrane-associated putative hydrolase Peptidase_M15_4 PF13539.6 ABA81368.1 - 6.4e-08 33.0 0.1 4.6e-07 30.3 0.1 2.2 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase PG_binding_1 PF01471.18 ABA81368.1 - 6.4e-07 29.5 0.0 0.016 15.4 0.0 2.3 2 0 0 2 2 2 2 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 ABA81368.1 - 0.00016 21.9 1.1 0.21 11.9 0.0 2.3 1 1 1 2 2 2 2 Predicted Peptidoglycan domain ALF PF03752.13 ABA81368.1 - 0.0067 16.4 1.8 0.0067 16.4 1.8 2.6 3 1 0 3 3 3 1 Short repeats of unknown function PG_binding_2 PF08823.11 ABA81368.1 - 0.0087 16.4 0.1 0.27 11.6 0.0 2.2 2 0 0 2 2 2 1 Putative peptidoglycan binding domain MethyltransfD12 PF02086.15 ABA81369.1 - 1.8e-16 60.6 0.0 3e-16 59.9 0.0 1.4 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Phage_holin_3_3 PF16083.5 ABA81371.1 - 7.1e-12 45.3 2.1 7.1e-12 45.3 2.1 1.8 1 1 1 2 2 2 1 LydA holin phage, holin superfamily III TMP_2 PF06791.13 ABA81376.1 - 6.8e-05 22.6 18.6 6.8e-05 22.6 18.6 10.1 5 4 4 10 10 10 1 Prophage tail length tape measure protein Ribosomal_L29 PF00831.23 ABA81376.1 - 0.011 15.7 0.3 9.1 6.3 0.1 3.0 2 0 0 2 2 2 0 Ribosomal L29 protein SbcD_C PF12320.8 ABA81376.1 - 0.058 13.7 1.0 4.7 7.6 0.0 4.4 4 0 0 4 4 4 0 Type 5 capsule protein repressor C-terminal domain SHOCT PF09851.9 ABA81376.1 - 0.43 10.4 3.8 2.6 7.9 1.7 2.9 2 0 0 2 2 2 0 Short C-terminal domain YbjQ_1 PF01906.17 ABA81377.1 - 6.1e-28 97.5 0.8 6.8e-28 97.4 0.8 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 ABA81377.1 - 0.017 15.5 0.0 0.024 15.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4156) Phage_tail_3 PF08813.11 ABA81380.1 - 1.6e-06 27.8 0.0 1.9e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Phage tail tube protein, TTP Phage_TTP_12 PF16461.5 ABA81380.1 - 2.1e-06 27.5 0.1 2.8e-06 27.1 0.1 1.1 1 0 0 1 1 1 1 Lambda phage tail tube protein, TTP Phage_cap_E PF03864.15 ABA81383.1 - 3.9e-96 322.1 0.0 4.6e-96 321.9 0.0 1.0 1 0 0 1 1 1 1 Phage major capsid protein E HDPD PF02924.14 ABA81384.1 - 4.6e-26 91.2 0.0 5.1e-26 91.0 0.0 1.0 1 0 0 1 1 1 1 Bacteriophage lambda head decoration protein D Peptidase_S49 PF01343.18 ABA81385.1 - 1.9e-30 105.9 0.4 3.4e-30 105.0 0.4 1.4 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 ABA81385.1 - 0.0013 18.7 4.7 0.0013 18.6 0.1 2.5 2 1 1 3 3 3 1 Clp protease Phage_portal_2 PF05136.13 ABA81386.1 - 2.1e-107 359.4 0.1 3.1e-107 358.9 0.1 1.2 1 0 0 1 1 1 1 Phage portal protein, lambda family DUF4633 PF15464.6 ABA81387.1 - 0.0017 18.5 0.2 0.002 18.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4633) MlaD PF02470.20 ABA81387.1 - 0.034 14.5 0.0 0.037 14.3 0.0 1.1 1 0 0 1 1 1 0 MlaD protein DUF3563 PF12086.8 ABA81387.1 - 4.7 7.0 7.8 0.71 9.6 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3563) Terminase_GpA PF05876.12 ABA81388.1 - 4.5e-172 573.5 0.0 5.5e-172 573.2 0.0 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-CSL PF05207.13 ABA81388.1 - 0.016 14.9 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 CSL zinc finger Zn_ribbon_SprT PF17283.2 ABA81388.1 - 0.14 12.1 2.2 4.5 7.3 0.2 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain RNA_POL_M_15KD PF02150.16 ABA81388.1 - 0.19 11.6 0.2 1 9.3 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 ABA81388.1 - 0.2 11.8 2.4 0.56 10.4 1.8 2.1 2 1 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 ABA81388.1 - 0.27 10.7 1.2 2.5 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 ABA81388.1 - 0.61 10.2 3.8 1.4 9.1 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 ABA81388.1 - 2.5 7.9 9.5 0.13 12.0 1.9 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf_UBZ PF18439.1 ABA81388.1 - 2.7 7.6 3.8 76 3.0 0.1 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF1441 PF07278.11 ABA81389.2 - 4.9e-09 36.3 0.4 7e-08 32.5 0.3 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1441) Phage_Nu1 PF07471.12 ABA81389.2 - 8.6e-09 35.4 4.5 8.3e-08 32.2 4.4 2.0 1 1 0 1 1 1 1 Phage DNA packaging protein Nu1 DivIC PF04977.15 ABA81389.2 - 0.3 10.9 0.0 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 Septum formation initiator DUF1376 PF07120.11 ABA81393.1 - 0.11 12.9 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1376) RINGv PF12906.7 ABA81393.1 - 0.14 12.3 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 RING-variant domain HTH_AsnC-type PF13404.6 ABA81395.1 - 1.6e-05 24.6 0.6 3.5e-05 23.5 0.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA81395.1 - 0.00014 21.7 0.3 0.0078 16.1 0.1 2.7 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.6 ABA81395.1 - 0.00029 20.3 0.1 0.00055 19.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 ABA81395.1 - 0.00045 19.7 0.1 0.0067 15.9 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 ABA81395.1 - 0.0012 18.5 0.1 1 9.2 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.6 ABA81395.1 - 0.0015 18.3 4.2 0.1 12.5 0.1 2.8 2 1 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 ABA81395.1 - 0.0016 18.6 2.3 1.1 9.4 0.1 3.0 2 1 1 3 3 3 2 Helix-turn-helix domain NUMOD1 PF07453.13 ABA81395.1 - 0.0035 17.6 0.0 0.21 11.9 0.0 2.3 2 0 0 2 2 2 1 NUMOD1 domain HTH_29 PF13551.6 ABA81395.1 - 0.0043 17.1 0.2 1 9.5 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4_2 PF08281.12 ABA81395.1 - 0.019 14.7 0.0 0.053 13.2 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_50 PF18024.1 ABA81395.1 - 0.022 14.4 0.7 10 5.8 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_10 PF04967.12 ABA81395.1 - 0.072 12.9 0.0 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain TnsD PF15978.5 ABA81395.1 - 0.085 11.8 0.0 0.39 9.6 0.0 1.8 2 0 0 2 2 2 0 Tn7-like transposition protein D HTH_31 PF13560.6 ABA81395.1 - 0.78 10.1 8.4 13 6.2 3.1 3.2 2 2 1 3 3 3 0 Helix-turn-helix domain DUF1937 PF09152.10 ABA81396.1 - 1.8e-49 167.4 0.4 2.1e-49 167.1 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1937) TetR_C_30 PF17939.1 ABA81398.1 - 0.0095 16.2 0.2 0.026 14.8 0.2 1.6 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain YdaS_antitoxin PF15943.5 ABA81398.1 - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 ABA81398.1 - 0.02 14.7 0.3 0.049 13.4 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 ABA81398.1 - 0.085 12.9 0.6 0.2 11.7 0.0 1.8 2 1 0 2 2 2 0 Winged helix-turn helix Phage_terminase PF10668.9 ABA81398.1 - 0.086 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_3 PF01381.22 ABA81399.2 - 1.4e-06 28.2 0.0 2.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix Peptidase_S24 PF00717.23 ABA81399.2 - 0.02 14.8 0.0 0.049 13.6 0.0 1.8 1 1 0 1 1 1 0 Peptidase S24-like HTH_26 PF13443.6 ABA81399.2 - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF2303 PF10065.9 ABA81404.1 - 1.4e-97 326.0 0.0 1.6e-97 325.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2303) DUF5131 PF07505.11 ABA81405.1 - 1.5e-104 348.9 0.0 1.8e-104 348.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) DUF4326 PF14216.6 ABA81407.2 - 1.9e-24 86.2 0.0 2.3e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4326) Phage_integrase PF00589.22 ABA81409.1 - 1.4e-24 86.8 0.6 7.5e-24 84.4 0.6 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 ABA81409.1 - 0.006 16.9 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain BKACE PF05853.12 ABA81410.1 - 1.2e-48 165.8 1.0 1.3e-48 165.6 1.0 1.0 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme Amidohydro_2 PF04909.14 ABA81410.1 - 0.03 14.1 1.2 0.043 13.6 1.2 1.3 1 0 0 1 1 1 0 Amidohydrolase PdxJ PF03740.13 ABA81410.1 - 0.047 12.8 0.1 0.072 12.2 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ Aminotran_3 PF00202.21 ABA81411.1 - 1.6e-103 346.5 0.0 2e-103 346.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 ABA81411.1 - 0.0037 16.5 0.0 0.0076 15.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Usp PF00582.26 ABA81412.1 - 5.9e-23 81.9 0.1 6.6e-23 81.8 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family NMT1_3 PF16868.5 ABA81414.1 - 2.6e-95 319.2 0.1 2.9e-95 319.0 0.1 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 ABA81414.1 - 1.4e-08 34.9 0.0 3.3e-08 33.8 0.0 1.6 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 ABA81414.1 - 0.0045 16.6 0.3 0.016 14.8 0.3 1.8 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 ABA81414.1 - 0.027 14.1 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family SIS PF01380.22 ABA81415.1 - 1.2e-10 41.3 0.0 2e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 SIS domain HTH_6 PF01418.17 ABA81415.1 - 1.3e-06 28.3 0.0 2.1e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family DUF692 PF05114.13 ABA81415.1 - 0.087 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF692) Polysacc_deac_1 PF01522.21 ABA81416.1 - 1.2e-17 63.9 0.0 2.1e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 ABA81416.1 - 6.9e-08 32.4 0.0 1.3e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF2194 PF09960.9 ABA81416.1 - 0.019 13.3 0.0 0.023 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) cobW PF02492.19 ABA81418.1 - 2.5e-26 92.3 0.0 3.1e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 ABA81418.1 - 2.3e-05 24.2 0.0 0.00024 21.0 0.0 2.2 2 0 0 2 2 2 1 Cobalamin synthesis protein cobW C-terminal domain AAA_16 PF13191.6 ABA81418.1 - 0.47 10.8 5.7 1.4 9.3 5.7 1.9 1 1 0 1 1 1 0 AAA ATPase domain TctA PF01970.16 ABA81419.1 - 1.4e-142 475.2 39.6 2.2e-142 474.6 39.6 1.3 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Fst_toxin PF13955.6 ABA81419.1 - 0.38 10.7 5.0 0.3 11.1 0.9 3.0 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system TctB PF07331.11 ABA81420.1 - 1e-17 64.7 12.8 1.2e-17 64.4 12.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family TctC PF03401.14 ABA81421.1 - 8.7e-30 103.7 0.1 1e-29 103.5 0.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Pmp3 PF01679.17 ABA81422.1 - 1.4e-06 28.4 9.5 1.6e-06 28.2 9.5 1.1 1 0 0 1 1 1 1 Proteolipid membrane potential modulator ParBc PF02195.18 ABA81423.1 - 4.3e-10 39.8 0.1 8.6e-10 38.8 0.1 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain AAA_31 PF13614.6 ABA81424.1 - 1.2e-31 110.0 0.0 2e-31 109.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 ABA81424.1 - 2.3e-16 60.0 0.0 3.7e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA81424.1 - 8.7e-16 58.0 0.0 1.7e-08 34.1 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 ABA81424.1 - 2.4e-08 33.8 1.3 2e-07 30.7 0.1 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 ABA81424.1 - 8.4e-06 25.4 0.1 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 ABA81424.1 - 1.5e-05 24.3 0.0 0.00022 20.5 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 ABA81424.1 - 0.0032 16.8 0.6 0.4 9.9 0.1 2.2 2 0 0 2 2 2 2 VirC1 protein LpxK PF02606.14 ABA81424.1 - 0.0056 15.8 0.0 0.0098 15.0 0.0 1.3 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_24 PF13479.6 ABA81424.1 - 0.021 14.5 0.0 0.049 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.18 ABA81424.1 - 0.023 14.2 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 ABA81424.1 - 0.17 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 ABA81424.1 - 0.18 11.4 0.0 0.48 10.0 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rep_3 PF01051.21 ABA81425.1 - 1.8e-29 103.2 0.0 2.2e-29 102.9 0.0 1.1 1 0 0 1 1 1 1 Initiator Replication protein Bactofilin PF04519.13 ABA81426.1 - 2.4e-20 72.6 2.1 2.7e-20 72.5 2.1 1.0 1 0 0 1 1 1 1 Polymer-forming cytoskeletal DeoRC PF00455.22 ABA81427.2 - 1.5e-41 142.0 0.0 2.1e-41 141.5 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 ABA81427.2 - 1.8e-16 59.6 0.6 2.8e-16 59.0 0.6 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 ABA81427.2 - 0.00069 19.5 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain DUF977 PF06163.11 ABA81427.2 - 0.0013 18.6 0.0 0.0041 17.1 0.1 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF977) GntR PF00392.21 ABA81427.2 - 0.016 14.8 0.1 0.039 13.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 ABA81427.2 - 0.023 14.7 0.1 0.076 13.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 ABA81427.2 - 0.043 14.2 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 ABA81427.2 - 0.13 11.9 0.1 0.28 10.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CoA_trans PF01144.23 ABA81427.2 - 0.13 11.6 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase SBP_bac_1 PF01547.25 ABA81428.1 - 8.9e-33 114.6 0.0 1.1e-32 114.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA81428.1 - 2.5e-28 99.7 0.0 3.7e-28 99.1 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 ABA81429.1 - 1.8e-23 83.2 17.5 1.8e-23 83.2 17.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA81430.1 - 1.3e-10 41.3 22.7 1.3e-10 41.3 22.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 ABA81431.1 - 5.9e-31 107.8 0.0 8.6e-31 107.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 ABA81431.1 - 4e-12 46.1 1.4 7.4e-12 45.3 0.3 2.1 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 ABA81431.1 - 4.2e-10 39.9 0.0 0.00057 19.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 ABA81431.1 - 5.2e-06 27.2 1.9 3.3e-05 24.6 0.7 3.0 2 1 0 2 2 2 1 MalK OB fold domain RsgA_GTPase PF03193.16 ABA81431.1 - 1e-05 25.5 0.0 1.8e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 ABA81431.1 - 1.6e-05 25.1 0.1 5.3e-05 23.4 0.1 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 ABA81431.1 - 4.5e-05 23.0 0.0 0.00016 21.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81431.1 - 0.0015 18.2 0.0 0.0051 16.5 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81431.1 - 0.0024 18.3 0.1 0.0038 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 ABA81431.1 - 0.0027 18.2 0.0 0.0038 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 ABA81431.1 - 0.0045 17.4 0.0 0.01 16.3 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 ABA81431.1 - 0.0061 16.8 0.1 0.018 15.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_15 PF13175.6 ABA81431.1 - 0.011 15.4 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 ABA81431.1 - 0.027 14.4 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 ABA81431.1 - 0.029 14.1 0.1 0.078 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 ABA81431.1 - 0.049 13.9 0.0 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 ABA81431.1 - 0.076 12.2 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 ABA81431.1 - 0.079 12.5 0.5 0.44 10.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 ABA81431.1 - 0.094 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 ABA81431.1 - 0.099 12.8 0.1 0.099 12.8 0.1 2.3 4 0 0 4 4 3 0 AAA domain MMR_HSR1 PF01926.23 ABA81431.1 - 0.16 12.0 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 ABA81431.1 - 0.2 11.5 0.0 0.33 10.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 ABA81431.1 - 0.23 11.8 0.1 0.42 11.0 0.1 1.4 1 0 0 1 1 1 0 RNA helicase ADH_N PF08240.12 ABA81432.1 - 7.3e-31 106.3 1.1 1.6e-30 105.2 0.3 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 ABA81432.1 - 2.8e-20 72.6 0.0 4.3e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 ABA81432.1 - 4.6e-08 32.8 0.1 1e-07 31.7 0.1 1.6 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 ABA81432.1 - 5.2e-06 27.6 0.0 1e-05 26.6 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 ABA81432.1 - 0.015 14.6 0.8 0.026 13.8 0.7 1.4 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 ABA81432.1 - 0.03 13.4 0.6 0.05 12.7 0.5 1.4 1 1 0 1 1 1 0 FAD binding domain FAD_binding_3 PF01494.19 ABA81432.1 - 0.039 13.2 0.3 0.24 10.6 0.2 2.0 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.14 ABA81432.1 - 0.079 11.6 0.3 0.11 11.2 0.3 1.2 1 0 0 1 1 1 0 HI0933-like protein Aldedh PF00171.22 ABA81433.1 - 1e-168 561.7 2.7 1.1e-168 561.5 2.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Iso_dh PF00180.20 ABA81434.1 - 6.9e-87 291.8 0.0 8.3e-87 291.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoC PF01791.9 ABA81435.1 - 1e-32 113.7 0.0 1.2e-32 113.4 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF3106 PF11304.8 ABA81435.1 - 0.18 12.3 0.0 0.32 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) PfkB PF00294.24 ABA81436.1 - 1.5e-43 149.2 2.0 1.7e-43 149.0 2.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TRI9 PF08195.11 ABA81436.1 - 0.021 14.7 0.4 0.055 13.4 0.4 1.7 1 0 0 1 1 1 0 TRI9 protein Acyl_transf_3 PF01757.22 ABA81437.1 - 3.7e-30 105.2 28.5 4.2e-30 105.0 28.5 1.0 1 0 0 1 1 1 1 Acyltransferase family Kinocilin PF15033.6 ABA81437.1 - 0.0081 15.8 0.6 0.024 14.3 0.6 1.8 1 0 0 1 1 1 1 Kinocilin protein DUF982 PF06169.12 ABA81437.1 - 0.57 10.2 3.2 14 5.8 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF982) Beta_helix PF13229.6 ABA81438.1 - 2.7e-22 79.3 1.7 3.6e-16 59.4 0.5 2.2 2 0 0 2 2 2 2 Right handed beta helix region NosD PF05048.13 ABA81438.1 - 3.1e-16 59.4 0.1 5.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 2 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 ABA81438.1 - 4e-05 23.1 1.1 0.051 12.9 0.0 3.3 1 1 1 3 3 3 2 Protein of unknown function (DUF1565) AbrB PF05145.12 ABA81439.1 - 7.1e-72 242.0 49.0 7.1e-72 242.0 49.0 1.9 1 1 1 2 2 2 2 Transition state regulatory protein AbrB Phage_holin_2_2 PF10746.9 ABA81439.1 - 0.0047 16.6 0.3 0.015 14.9 0.3 1.9 1 0 0 1 1 1 1 Phage holin T7 family, holin superfamily II MFS_1 PF07690.16 ABA81440.1 - 7.7e-38 130.3 81.7 2.7e-27 95.6 45.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_M48_N PF16491.5 ABA81440.1 - 0.11 12.3 0.1 0.11 12.3 0.1 2.9 3 0 0 3 3 3 0 CAAX prenyl protease N-terminal, five membrane helices OATP PF03137.20 ABA81440.1 - 5.6 5.1 9.5 0.16 10.3 1.3 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family AAA_31 PF13614.6 ABA81442.1 - 4.5e-36 124.4 0.0 6.8e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 ABA81442.1 - 6.7e-22 77.9 0.0 1e-21 77.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA81442.1 - 4.7e-12 45.7 0.4 2.4e-07 30.3 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 ABA81442.1 - 1e-10 41.5 0.0 1.5e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 ABA81442.1 - 4.8e-08 32.7 0.1 8.5e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 ABA81442.1 - 9.5e-08 31.6 0.1 1.3e-05 24.6 0.0 2.4 2 0 0 2 2 2 1 Anion-transporting ATPase MerR PF00376.23 ABA81442.1 - 1.5e-06 27.9 0.2 4.4e-06 26.3 0.2 1.9 1 0 0 1 1 1 1 MerR family regulatory protein ATP_bind_1 PF03029.17 ABA81442.1 - 6.8e-05 22.8 0.0 0.00077 19.3 0.0 2.1 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein Fer4_NifH PF00142.18 ABA81442.1 - 0.00021 20.8 0.0 0.001 18.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 ABA81442.1 - 0.00066 19.0 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein MerR_1 PF13411.6 ABA81442.1 - 0.00073 19.6 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_17 PF12728.7 ABA81442.1 - 0.0026 17.9 0.0 0.0068 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain CLP1_P PF16575.5 ABA81442.1 - 0.0051 16.6 0.0 0.0085 15.9 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 ABA81442.1 - 0.017 14.8 0.1 0.032 13.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain LpxK PF02606.14 ABA81442.1 - 0.021 13.9 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_24 PF13479.6 ABA81442.1 - 0.067 12.9 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 ABA81442.1 - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit RepB PF07506.11 ABA81443.1 - 5.2e-20 72.3 0.0 8.6e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 RepB plasmid partitioning protein ParBc PF02195.18 ABA81443.1 - 2.7e-15 56.4 0.1 6.5e-15 55.2 0.1 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain Glyco_transf_21 PF13506.6 ABA81443.1 - 0.08 12.4 0.0 4.3 6.8 0.0 2.7 2 1 1 3 3 3 0 Glycosyl transferase family 21 RP-C PF03428.13 ABA81444.2 - 3.7e-62 209.1 4.6 1.1e-61 207.6 4.6 1.8 1 0 0 1 1 1 1 Replication protein C N-terminal domain RP-C_C PF11800.8 ABA81444.2 - 9.4e-62 208.8 0.7 9.4e-62 208.8 0.7 1.8 3 0 0 3 3 3 1 Replication protein C C-terminal region HTH_20 PF12840.7 ABA81444.2 - 0.00015 21.7 2.8 0.00017 21.6 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 ABA81444.2 - 0.00029 20.6 0.1 0.00065 19.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 ABA81444.2 - 0.0092 15.8 0.5 0.0092 15.8 0.5 3.1 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.10 ABA81444.2 - 0.021 14.6 0.2 0.021 14.6 0.2 3.0 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_36 PF13730.6 ABA81444.2 - 0.026 14.5 0.0 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain BLACT_WH PF17778.1 ABA81444.2 - 0.04 13.9 0.5 0.097 12.7 0.3 1.8 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain HTH_12 PF08461.10 ABA81444.2 - 0.65 10.0 4.2 0.72 9.8 0.3 2.7 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain LysR_substrate PF03466.20 ABA81445.1 - 1.4e-29 102.9 6.2 2e-29 102.4 6.2 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81445.1 - 1.9e-17 62.9 0.2 5.4e-17 61.5 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA81445.1 - 0.035 13.9 0.0 0.087 12.6 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 ABA81445.1 - 0.047 13.5 0.2 0.15 11.8 0.2 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family GGDEF PF00990.21 ABA81446.1 - 3e-35 121.4 0.0 4e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_7 PF12860.7 ABA81446.1 - 5.8e-08 32.9 0.0 1.2e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 ABA81446.1 - 6.8e-05 23.1 0.5 0.0044 17.3 0.0 2.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 ABA81446.1 - 8.8e-05 22.4 0.0 0.0015 18.5 0.0 2.7 2 0 0 2 2 2 1 PAS domain Aminotran_1_2 PF00155.21 ABA81447.1 - 1.3e-18 67.3 0.0 1.7e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 ABA81447.1 - 1.8e-12 46.7 1.1 1.8e-12 46.7 1.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family PTS-HPr PF00381.19 ABA81447.1 - 0.0011 19.2 0.1 0.0027 17.9 0.1 1.6 1 0 0 1 1 1 1 PTS HPr component phosphorylation site HTH_Crp_2 PF13545.6 ABA81447.1 - 0.059 13.3 0.2 0.059 13.3 0.2 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_50 PF18024.1 ABA81447.1 - 0.082 12.5 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 ABA81447.1 - 0.14 12.1 0.0 0.35 10.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.19 ABA81447.1 - 0.14 12.4 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 ABA81447.1 - 0.17 11.8 3.3 0.2 11.6 0.8 2.4 2 0 0 2 2 2 0 MarR family DctP PF03480.13 ABA81448.2 - 6.4e-69 232.4 0.2 8.3e-69 232.1 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DctQ PF04290.12 ABA81449.1 - 4.2e-25 88.2 12.4 5.4e-25 87.8 12.4 1.2 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctM PF06808.12 ABA81450.1 - 1.2e-97 327.4 62.3 2.5e-97 326.3 62.3 1.5 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component Bunya_G2 PF03563.13 ABA81450.1 - 2.5 7.3 4.7 3.9 6.6 4.7 1.2 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 MgtC PF02308.16 ABA81450.1 - 3.4 8.1 27.8 0.88 10.0 9.0 3.7 2 2 1 3 3 3 0 MgtC family SnoaL_2 PF12680.7 ABA81451.1 - 5.7e-23 81.5 4.4 6.4e-23 81.3 4.4 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 ABA81451.1 - 1.3e-14 54.1 0.4 1.8e-14 53.6 0.4 1.2 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 ABA81451.1 - 3e-06 27.6 0.7 4.1e-06 27.1 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 ABA81451.1 - 0.00073 19.8 0.5 0.0023 18.2 0.3 1.6 1 1 1 2 2 2 1 SnoaL-like domain SnoaL_4 PF13577.6 ABA81451.1 - 0.0029 17.7 0.4 0.0037 17.4 0.4 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 ABA81451.1 - 0.078 13.6 0.0 0.092 13.3 0.0 1.3 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain DAO PF01266.24 ABA81452.1 - 3.3e-47 161.8 9.3 4e-47 161.5 9.3 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 ABA81452.1 - 2.2e-05 23.8 0.2 4.1e-05 22.9 0.2 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 ABA81452.1 - 0.00017 21.7 0.4 0.00062 19.9 0.4 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 ABA81452.1 - 0.00034 20.0 0.0 0.00049 19.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 ABA81452.1 - 0.00085 18.6 0.1 0.002 17.4 0.1 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 ABA81452.1 - 0.0023 17.1 10.1 0.025 13.7 10.1 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 ABA81452.1 - 0.038 14.6 0.2 0.17 12.5 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA81452.1 - 0.14 10.8 0.1 2 7.0 0.2 2.0 2 0 0 2 2 2 0 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 ABA81452.1 - 0.25 10.9 0.2 0.36 10.4 0.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TPP_enzyme_N PF02776.18 ABA81453.1 - 8.4e-43 145.9 0.7 2.8e-41 141.0 0.1 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 ABA81453.1 - 1.1e-34 119.1 0.0 2.7e-34 117.8 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 ABA81453.1 - 1.8e-30 105.8 0.1 4.1e-30 104.6 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cons_hypoth698 PF03601.14 ABA81454.1 - 3.9e-65 219.7 18.7 4.8e-65 219.4 18.7 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 PTA_PTB PF01515.19 ABA81455.1 - 3.9e-107 358.3 0.0 5.1e-107 357.9 0.0 1.1 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase TetR_C_7 PF14246.6 ABA81455.1 - 0.029 14.4 0.2 0.29 11.2 0.0 2.3 1 1 1 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain MTTB PF06253.11 ABA81456.1 - 8.2e-218 723.4 0.1 9.3e-218 723.2 0.1 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) MR_MLE_C PF13378.6 ABA81457.1 - 4.7e-36 124.4 0.3 6.5e-36 124.0 0.3 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 ABA81457.1 - 1.8e-17 63.6 0.0 2.9e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7kD_DNA_binding PF02294.18 ABA81457.1 - 0.021 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 7kD DNA-binding domain adh_short_C2 PF13561.6 ABA81458.1 - 8e-52 176.1 1.3 1e-51 175.8 1.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81458.1 - 2.7e-43 147.7 0.5 4.2e-43 147.1 0.5 1.3 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 ABA81458.1 - 0.00086 18.8 0.2 0.0012 18.4 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 ABA81458.1 - 0.0032 17.4 1.9 0.28 11.1 1.9 2.2 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 ABA81458.1 - 0.78 9.2 2.6 2.1 7.9 2.8 1.5 2 0 0 2 2 2 0 NmrA-like family adh_short_C2 PF13561.6 ABA81459.1 - 9.5e-62 208.6 3.3 1.7e-61 207.7 3.3 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81459.1 - 3.4e-51 173.5 1.3 7.8e-51 172.3 1.3 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81459.1 - 1.1e-09 38.5 3.2 3.2e-07 30.4 3.2 2.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA81459.1 - 0.00036 20.1 0.3 0.00049 19.6 0.3 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA81459.1 - 0.085 11.9 0.7 0.12 11.4 0.7 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain MccV PF17508.2 ABA81459.1 - 0.57 10.8 3.0 0.86 10.2 1.7 2.0 2 0 0 2 2 2 0 Microcin V bacteriocin DAO PF01266.24 ABA81460.1 - 8.9e-36 124.2 6.7 1.2e-35 123.8 6.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 ABA81460.1 - 2.3e-05 24.5 0.2 5.6e-05 23.3 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 ABA81460.1 - 4.8e-05 22.7 0.1 8.3e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 ABA81460.1 - 0.00023 20.5 0.2 0.0004 19.7 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 ABA81460.1 - 0.00024 21.1 0.4 0.0093 16.0 0.2 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 ABA81460.1 - 0.00055 19.1 5.7 0.0021 17.2 5.7 1.9 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 ABA81460.1 - 0.00083 18.5 0.6 0.0012 17.9 0.6 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.14 ABA81460.1 - 0.0018 17.1 0.3 0.15 10.7 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 ABA81460.1 - 0.0048 16.2 0.0 1.3 8.2 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 ABA81460.1 - 0.019 14.3 0.3 0.04 13.2 0.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 ABA81460.1 - 0.052 12.8 0.1 0.32 10.2 0.1 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 ABA81460.1 - 0.14 11.4 0.3 0.2 10.9 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.22 ABA81460.1 - 0.36 9.9 2.2 0.22 10.6 0.3 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A Aldedh PF00171.22 ABA81461.1 - 1.9e-164 547.6 0.0 2.1e-164 547.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DHDPS PF00701.22 ABA81462.1 - 6.4e-54 182.6 0.0 7.4e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family FCD PF07729.12 ABA81463.2 - 9.9e-18 64.8 3.1 1.8e-17 64.0 3.1 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 ABA81463.2 - 5.2e-13 48.4 0.1 1.4e-12 47.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 ABA81463.2 - 0.014 15.5 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 ABA81463.2 - 0.051 13.1 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ABC_tran PF00005.27 ABA81464.1 - 7e-33 114.0 0.0 1.1e-32 113.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81464.1 - 8.7e-07 29.0 0.0 0.00042 20.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 ABA81464.1 - 1.4e-06 28.8 0.0 2.2e-05 24.9 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 ABA81464.1 - 0.00033 20.3 0.0 0.00066 19.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain APS_kinase PF01583.20 ABA81464.1 - 0.003 17.5 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase ABC_ATPase PF09818.9 ABA81464.1 - 0.0046 15.8 0.0 1.9 7.2 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 ABA81464.1 - 0.005 16.6 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA81464.1 - 0.0054 16.7 0.0 0.016 15.2 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_5 PF07728.14 ABA81464.1 - 0.0098 15.9 0.0 0.068 13.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 ABA81464.1 - 0.018 15.3 0.0 0.031 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 ABA81464.1 - 0.023 15.3 0.0 0.046 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA81464.1 - 0.027 14.6 0.1 0.19 11.8 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 ABA81464.1 - 0.032 14.7 0.0 0.051 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 ABA81464.1 - 0.054 13.4 0.1 0.26 11.2 0.1 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 ABA81464.1 - 0.058 13.6 0.1 0.14 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 ABA81464.1 - 0.092 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein ATP-synt_ab PF00006.25 ABA81464.1 - 0.1 12.3 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.21 ABA81464.1 - 0.12 11.8 0.0 0.3 10.4 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 ABA81464.1 - 0.12 12.3 0.0 0.52 10.2 0.0 2.0 3 0 0 3 3 3 0 NACHT domain G-alpha PF00503.20 ABA81464.1 - 0.29 10.3 0.0 0.38 9.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.22 ABA81465.1 - 6e-24 84.8 23.2 7.5e-24 84.5 11.2 2.2 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component Phage_holin_1 PF04531.13 ABA81465.1 - 0.16 12.5 3.5 20 5.8 0.0 2.9 2 0 0 2 2 2 0 Bacteriophage holin OpuAC PF04069.12 ABA81466.1 - 1.1e-44 153.0 0.4 1.3e-44 152.7 0.4 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system ASCH PF04266.14 ABA81466.1 - 0.015 15.9 0.0 2.3 8.8 0.0 2.3 2 0 0 2 2 2 0 ASCH domain VCBS PF13517.6 ABA81466.1 - 0.13 12.9 1.2 3.8 8.2 0.8 2.6 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella HTH_18 PF12833.7 ABA81467.1 - 1.3e-24 86.2 1.2 3.9e-24 84.7 1.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 ABA81467.1 - 9.9e-17 60.6 0.1 2.5e-10 40.2 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DJ-1_PfpI PF01965.24 ABA81467.1 - 9e-12 45.1 0.0 1.4e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF3365 PF11845.8 ABA81468.1 - 6.4e-23 81.8 0.0 7.7e-23 81.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3365) Cytochrome_CBB3 PF13442.6 ABA81468.1 - 0.037 14.3 0.1 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III TPP_enzyme_C PF02775.21 ABA81468.1 - 0.14 11.9 0.1 0.35 10.7 0.1 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RNase_II_C_S1 PF18614.1 ABA81469.1 - 0.016 15.1 1.3 3.6 7.6 0.3 2.6 2 1 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain HemolysinCabind PF00353.19 ABA81470.1 - 5.2e-47 157.4 177.3 5.9e-10 38.9 18.9 11.4 10 2 2 12 12 12 9 RTX calcium-binding nonapeptide repeat (4 copies) Peptidase_M10_C PF08548.11 ABA81470.1 - 1.5e-14 54.4 9.6 1.5e-14 54.4 9.6 5.6 5 1 0 5 5 5 2 Peptidase M10 serralysin C terminal PPC PF04151.15 ABA81470.1 - 1.6e-09 38.7 4.3 5.7e-09 36.9 2.0 3.2 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain Peptidase_M66 PF10462.9 ABA81470.1 - 0.0028 16.7 1.7 0.005 15.8 1.7 1.3 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M10 PF00413.24 ABA81470.1 - 0.0068 16.3 1.0 0.051 13.4 1.0 2.2 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 ABA81470.1 - 0.015 15.9 0.1 0.035 14.6 0.1 1.7 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 ABA81470.1 - 0.031 13.9 0.1 0.064 12.9 0.1 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 ABA81470.1 - 0.11 12.6 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 DUF421 PF04239.12 ABA81471.2 - 4.6e-09 36.0 0.0 6.8e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF421) NTP_transf_8 PF12281.8 ABA81472.1 - 6.4e-73 245.4 0.1 8.4e-73 245.0 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase Esterase_phd PF10503.9 ABA81473.1 - 7.4e-61 205.5 7.8 7.4e-61 205.5 7.8 2.0 2 1 0 2 2 2 1 Esterase PHB depolymerase Esterase PF00756.20 ABA81473.1 - 1.4e-12 47.8 0.1 1.9e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 ABA81473.1 - 8.9e-10 38.4 0.6 4.1e-08 33.0 0.6 2.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 ABA81473.1 - 2.6e-05 23.6 0.7 0.039 13.2 0.1 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 FSH1 PF03959.13 ABA81473.1 - 7.5e-05 22.5 0.0 0.0035 17.0 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 ABA81473.1 - 0.00068 19.5 0.1 0.0016 18.3 0.1 1.5 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase AXE1 PF05448.12 ABA81473.1 - 0.0048 15.6 0.1 0.0082 14.9 0.1 1.3 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 ABA81473.1 - 0.0099 15.8 0.3 0.0099 15.8 0.3 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 ABA81473.1 - 0.032 13.8 1.2 0.069 12.7 0.8 1.8 1 1 1 2 2 2 0 Dienelactone hydrolase family RHH_8 PF17723.1 ABA81474.1 - 3.3e-49 166.0 0.2 3.8e-49 165.8 0.2 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_1 PF01402.21 ABA81474.1 - 0.0035 17.2 0.0 0.015 15.2 0.0 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2968 PF11180.8 ABA81474.1 - 0.11 12.1 0.3 0.13 11.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Epimerase PF01370.21 ABA81475.1 - 5.7e-48 163.5 0.0 6.8e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA81475.1 - 6e-43 147.5 0.0 1.2e-42 146.5 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 ABA81475.1 - 9.1e-14 51.8 0.0 2.8e-13 50.2 0.0 1.9 1 1 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 ABA81475.1 - 4e-13 49.0 0.0 5.6e-13 48.5 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 ABA81475.1 - 2.9e-11 43.0 0.0 3.7e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 ABA81475.1 - 2.9e-05 23.7 0.0 5.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 ABA81475.1 - 0.00024 20.4 0.0 0.0056 15.9 0.0 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 ABA81475.1 - 0.0068 15.9 0.0 0.034 13.6 0.0 1.9 1 1 1 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.18 ABA81475.1 - 0.01 16.1 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 ABA81475.1 - 0.039 13.9 0.0 0.23 11.4 0.0 2.1 2 1 0 2 2 2 0 KR domain NAD_binding_4 PF07993.12 ABA81475.1 - 0.045 12.9 0.4 6.2 5.9 0.0 2.5 2 1 0 2 2 2 0 Male sterility protein RgpF PF05045.12 ABA81477.2 - 2.6e-19 69.4 0.0 5.4e-19 68.3 0.0 1.4 1 1 0 1 1 1 1 Rhamnan synthesis protein F Glyco_trans_1_4 PF13692.6 ABA81477.2 - 3.6e-08 33.9 0.0 2.9e-06 27.7 0.0 2.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_5 PF16994.5 ABA81477.2 - 1.2e-05 25.0 0.0 1.9e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl-transferase family 4 Glycos_transf_1 PF00534.20 ABA81477.2 - 0.0013 18.3 0.0 0.0048 16.4 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Sulfotransfer_4 PF17784.1 ABA81478.1 - 0.0011 18.8 0.4 0.01 15.7 0.4 2.1 1 1 0 1 1 1 1 Sulfotransferase domain Transposase_21 PF02992.14 ABA81478.1 - 0.16 11.2 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Transposase family tnp2 Sulfotransfer_3 PF13469.6 ABA81479.1 - 1.6e-10 41.8 5.3 2.2e-10 41.3 0.0 2.9 2 2 0 2 2 2 1 Sulfotransferase family Sulfotransfer_1 PF00685.27 ABA81479.1 - 0.0025 17.3 0.0 0.18 11.3 0.0 2.3 2 0 0 2 2 2 1 Sulfotransferase domain BLOC1_2 PF10046.9 ABA81479.1 - 0.0093 16.2 1.0 0.037 14.3 0.7 2.2 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1515 PF07439.11 ABA81479.1 - 0.012 15.6 0.3 0.041 13.9 0.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) SlyX PF04102.12 ABA81479.1 - 0.033 14.8 3.1 0.033 14.8 3.1 3.7 1 1 3 4 4 3 0 SlyX DUF1664 PF07889.12 ABA81479.1 - 0.034 14.2 0.3 0.092 12.8 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_13 PF13166.6 ABA81479.1 - 0.078 11.6 6.5 0.12 11.0 6.5 1.1 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.8 ABA81479.1 - 0.083 12.9 6.7 1.5 8.8 0.1 3.1 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding CENP-F_leu_zip PF10473.9 ABA81479.1 - 0.17 11.9 10.9 0.34 10.9 10.6 1.7 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lzipper-MIP1 PF14389.6 ABA81479.1 - 0.6 10.5 8.6 0.51 10.7 5.1 2.5 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 TRAF_BIRC3_bd PF16673.5 ABA81479.1 - 0.67 9.8 4.4 0.4 10.5 0.9 2.5 2 1 1 3 3 3 0 TNF receptor-associated factor BIRC3 binding domain PMEI PF04043.15 ABA81479.1 - 0.9 9.9 5.4 1.2 9.5 4.6 1.6 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor Nsp1_C PF05064.13 ABA81479.1 - 0.91 9.3 4.2 1 9.2 0.2 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region V_ATPase_I PF01496.19 ABA81479.1 - 1 7.2 3.1 1.3 6.8 3.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DMSP_lyase PF16867.5 ABA81479.1 - 1.6 8.4 4.3 1.9 8.1 2.2 2.1 1 1 1 2 2 2 0 Dimethlysulfonioproprionate lyase ATG16 PF08614.11 ABA81479.1 - 1.6 8.9 26.1 0.76 10.0 15.1 2.2 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Spc24 PF08286.11 ABA81479.1 - 1.7 8.9 5.0 1.6 9.0 0.8 2.6 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Uso1_p115_C PF04871.13 ABA81479.1 - 2.5 8.5 16.4 6.3 7.2 5.4 2.6 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF2730 PF10805.8 ABA81479.1 - 2.6 8.2 5.7 2.5 8.2 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) Cortex-I_coil PF09304.10 ABA81479.1 - 4.7 7.5 14.2 9.8 6.4 4.3 2.4 1 1 0 2 2 2 0 Cortexillin I, coiled coil Spc7 PF08317.11 ABA81479.1 - 6.6 5.5 19.1 0.27 10.1 7.9 2.4 2 1 1 3 3 3 0 Spc7 kinetochore protein GAS PF13851.6 ABA81479.1 - 7.2 5.9 9.3 1.7 7.9 3.7 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Phage_GPO PF05929.11 ABA81479.1 - 9.9 5.7 12.0 1.2 8.7 2.5 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase ATPase PF06745.13 ABA81480.1 - 2.1e-105 351.2 0.0 1.2e-65 221.1 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 ABA81480.1 - 1.6e-16 60.4 1.1 5.7e-09 35.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain DnaB_C PF03796.15 ABA81480.1 - 6.2e-09 35.6 0.0 0.00015 21.2 0.1 2.6 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_16 PF13191.6 ABA81480.1 - 3.3e-08 34.1 4.3 2.8e-05 24.5 0.0 3.3 3 0 0 3 3 3 2 AAA ATPase domain RecA PF00154.21 ABA81480.1 - 2.3e-07 30.6 0.1 0.00068 19.2 0.0 2.5 2 0 0 2 2 2 2 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 ABA81480.1 - 1.1e-06 28.5 0.1 0.0015 18.3 0.1 2.8 2 0 0 2 2 2 2 IstB-like ATP binding protein GvpD PF07088.11 ABA81480.1 - 3.1e-06 26.1 0.0 0.00085 18.1 0.1 3.0 2 1 1 3 3 3 1 GvpD gas vesicle protein NACHT PF05729.12 ABA81480.1 - 1e-05 25.5 0.2 0.077 12.9 0.0 2.9 2 1 0 2 2 2 2 NACHT domain AAA_22 PF13401.6 ABA81480.1 - 1.8e-05 25.0 0.7 0.12 12.6 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA PF00004.29 ABA81480.1 - 2.9e-05 24.5 0.1 0.02 15.3 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 ABA81480.1 - 4e-05 23.4 0.0 0.087 12.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.9 ABA81480.1 - 0.00027 20.3 0.0 0.034 13.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 ABA81480.1 - 0.00035 19.9 0.5 0.035 13.4 0.4 2.4 2 0 0 2 2 2 1 Rad51 AAA_14 PF13173.6 ABA81480.1 - 0.0021 18.1 0.0 0.11 12.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 ABA81480.1 - 0.003 17.9 0.0 3.8 7.9 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Viral_helicase1 PF01443.18 ABA81480.1 - 0.0095 15.7 0.1 0.51 10.0 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_7 PF12775.7 ABA81480.1 - 0.016 14.7 0.0 1 8.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region Thymidylate_kin PF02223.17 ABA81480.1 - 0.018 14.8 1.1 0.33 10.6 0.0 3.3 4 0 0 4 4 3 0 Thymidylate kinase PhoH PF02562.16 ABA81480.1 - 0.02 14.4 0.8 6.2 6.2 0.0 2.8 3 0 0 3 3 3 0 PhoH-like protein LpxI_N PF17930.1 ABA81480.1 - 0.027 14.4 0.1 0.65 9.9 0.1 3.0 3 0 0 3 3 3 0 LpxI N-terminal domain PAXNEB PF05625.11 ABA81480.1 - 0.032 13.4 0.1 0.16 11.1 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein AAA_5 PF07728.14 ABA81480.1 - 0.034 14.2 0.3 0.64 10.0 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 ABA81480.1 - 0.034 14.7 1.6 4.8 7.7 0.0 3.2 3 0 0 3 3 3 0 ABC transporter AAA_30 PF13604.6 ABA81480.1 - 0.06 13.1 0.0 0.06 13.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 ABA81480.1 - 0.095 12.5 0.2 3.2 7.6 0.0 3.0 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_19 PF13245.6 ABA81480.1 - 0.11 12.8 0.0 24 5.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 ABA81480.1 - 0.13 12.1 0.0 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 ABA81480.1 - 0.13 12.8 2.3 1 9.9 0.0 3.0 3 1 0 3 3 2 0 AAA domain AAA_33 PF13671.6 ABA81480.1 - 1.6 8.9 8.1 11 6.1 0.0 3.3 3 0 0 3 3 3 0 AAA domain DUF5401 PF17380.2 ABA81480.1 - 1.8 6.6 11.3 2.6 6.0 11.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) KaiB PF07689.12 ABA81481.1 - 1.5e-24 85.6 0.4 1.6e-24 85.4 0.4 1.0 1 0 0 1 1 1 1 KaiB domain HWE_HK PF07536.14 ABA81482.1 - 7.2e-25 87.5 0.1 1.9e-24 86.2 0.1 1.8 1 0 0 1 1 1 1 HWE histidine kinase PAS_4 PF08448.10 ABA81482.1 - 6.9e-10 39.2 0.1 4.2e-05 23.8 0.1 3.1 2 1 0 2 2 2 2 PAS fold HisKA_2 PF07568.12 ABA81482.1 - 2.2e-07 30.8 1.6 2.4e-07 30.7 0.4 1.7 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.7 ABA81482.1 - 1.1e-05 25.3 0.1 0.023 14.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 ABA81482.1 - 0.00019 21.4 0.0 0.15 12.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 ABA81482.1 - 0.00021 21.5 0.0 0.59 10.4 0.0 2.6 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 ABA81482.1 - 0.004 17.1 0.0 0.0097 15.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Ribosomal_S7e PF01251.18 ABA81482.1 - 0.011 15.5 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S7e DUF2540 PF10802.8 ABA81483.1 - 0.045 13.8 0.0 0.059 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) Usp PF00582.26 ABA81484.1 - 5.3e-35 121.0 1.0 6.2e-35 120.8 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family NAD_binding_1 PF00175.21 ABA81485.1 - 3.6e-13 50.1 0.0 5.3e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2 PF00111.27 ABA81485.1 - 4.4e-11 42.6 3.5 8e-11 41.7 3.5 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.24 ABA81485.1 - 3.8e-09 36.8 0.0 7.2e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 ABA81485.1 - 0.0047 17.1 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 2 Ferric reductase NAD binding domain Ring_hydroxyl_A PF00848.19 ABA81486.1 - 9.7e-46 156.4 0.0 2.4e-45 155.1 0.0 1.6 2 0 0 2 2 2 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 ABA81486.1 - 1.2e-16 60.4 0.0 2.2e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain LysR_substrate PF03466.20 ABA81487.1 - 1.2e-30 106.4 7.1 1.2e-30 106.4 7.1 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81487.1 - 6.8e-20 70.8 2.4 1.2e-19 70.0 2.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family hNIFK_binding PF12196.8 ABA81487.1 - 0.053 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 FHA Ki67 binding domain of hNIFK MarR_2 PF12802.7 ABA81487.1 - 0.063 13.2 0.1 0.26 11.2 0.1 2.1 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 ABA81487.1 - 0.09 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_50 PF18024.1 ABA81487.1 - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Arg_repressor PF01316.21 ABA81487.1 - 0.16 11.7 0.1 1.3 8.8 0.0 2.0 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain PepSY_2 PF13670.6 ABA81488.1 - 6.1e-24 83.8 0.5 6.8e-24 83.7 0.5 1.0 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain Trans_reg_C PF00486.28 ABA81489.1 - 7.3e-23 80.4 0.1 1.4e-22 79.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 ABA81489.1 - 4.4e-20 71.9 0.1 6.5e-20 71.4 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 ABA81490.2 - 5.5e-12 46.2 0.0 1.1e-11 45.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 ABA81490.2 - 1.1e-07 31.7 1.8 2.5e-07 30.6 0.4 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain 2CSK_N PF08521.10 ABA81490.2 - 4.4e-07 30.1 2.5 4.6e-06 26.8 0.4 3.0 2 1 0 2 2 2 1 Two-component sensor kinase N-terminal HAMP PF00672.25 ABA81490.2 - 0.0011 19.4 1.1 0.0011 19.4 1.1 2.9 3 0 0 3 3 3 1 HAMP domain HATPase_c_2 PF13581.6 ABA81490.2 - 0.0046 16.9 0.0 0.023 14.7 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Transketolase_N PF00456.21 ABA81491.1 - 1.3e-14 53.9 0.0 2.5e-10 39.9 0.0 2.2 2 0 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain PDH_E1_M PF17831.1 ABA81491.1 - 5.6e-14 52.2 0.0 1.2e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Pyruvate dehydrogenase E1 component middle domain DXP_synthase_N PF13292.6 ABA81491.1 - 0.0067 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase AsnC_trans_reg PF01037.21 ABA81492.1 - 1.3e-22 79.6 0.0 2e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 ABA81492.1 - 3.3e-21 74.6 0.0 5.7e-21 73.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 ABA81492.1 - 1.6e-17 63.0 1.9 1.6e-17 63.0 1.9 2.1 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 ABA81492.1 - 4e-07 30.0 0.6 9.1e-07 28.9 0.4 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA81492.1 - 8.5e-07 28.8 0.6 1.9e-06 27.7 0.3 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 ABA81492.1 - 3.5e-05 23.7 0.1 0.00012 22.0 0.0 1.9 2 1 0 2 2 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 ABA81492.1 - 0.00021 21.1 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 ABA81492.1 - 0.00056 19.7 0.1 0.00097 18.9 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 ABA81492.1 - 0.0018 18.6 0.0 0.0031 17.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 ABA81492.1 - 0.0066 16.1 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 ABA81492.1 - 0.0095 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_39 PF14090.6 ABA81492.1 - 0.015 15.0 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 ABA81492.1 - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_CodY PF08222.11 ABA81492.1 - 0.021 14.4 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.6 ABA81492.1 - 0.028 14.9 0.0 0.046 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 ABA81492.1 - 0.034 14.3 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.6 ABA81492.1 - 0.053 13.3 0.0 0.085 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 ABA81492.1 - 0.084 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Sigma70_r4 PF04545.16 ABA81492.1 - 0.1 12.1 0.1 0.1 12.1 0.1 1.9 2 1 0 2 2 2 0 Sigma-70, region 4 Sun2_CC2 PF18580.1 ABA81492.1 - 0.13 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 HTH_36 PF13730.6 ABA81492.1 - 0.14 12.1 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 ABA81492.1 - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB adh_short_C2 PF13561.6 ABA81493.1 - 3.3e-57 193.7 0.1 5.1e-57 193.1 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81493.1 - 1.5e-52 177.9 0.0 2e-52 177.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81493.1 - 1.6e-09 37.9 0.1 2.5e-09 37.3 0.1 1.3 1 0 0 1 1 1 1 KR domain 2-Hacid_dh_C PF02826.19 ABA81493.1 - 0.0027 17.1 0.0 0.0054 16.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 ABA81493.1 - 0.0034 17.3 0.0 0.0055 16.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 ABA81493.1 - 0.016 15.9 0.1 0.033 14.9 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Epimerase PF01370.21 ABA81493.1 - 0.024 14.1 0.0 0.037 13.5 0.0 1.3 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 ABA81493.1 - 0.031 13.6 0.0 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) BAT PF15915.5 ABA81493.1 - 0.034 14.0 0.2 0.072 13.0 0.1 1.6 2 0 0 2 2 2 0 GAF and HTH_10 associated domain NAD_binding_3 PF03447.16 ABA81493.1 - 0.058 14.1 0.2 0.096 13.3 0.2 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 ABA81493.1 - 0.071 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DFP PF04127.15 ABA81493.1 - 0.081 12.7 0.1 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein FCD PF07729.12 ABA81494.1 - 5.3e-23 81.8 0.7 5.3e-23 81.8 0.7 1.9 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 ABA81494.1 - 6.6e-16 57.7 0.8 1.5e-15 56.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family PCP_red PF08369.10 ABA81494.1 - 0.001 19.2 0.8 0.024 14.8 0.3 2.6 2 0 0 2 2 2 1 Proto-chlorophyllide reductase 57 kD subunit HTH_24 PF13412.6 ABA81494.1 - 0.0035 16.9 0.0 0.0071 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 ABA81494.1 - 0.038 14.0 0.4 1.2 9.2 0.0 2.9 2 1 0 2 2 2 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 ABA81494.1 - 0.065 13.2 0.2 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 ABA81494.1 - 0.15 11.9 0.7 0.33 10.8 0.1 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain 3HCDH_N PF02737.18 ABA81495.1 - 2.8e-48 164.2 0.0 3.6e-48 163.8 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 ABA81495.1 - 8.5e-13 48.7 0.0 1.8e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 ABA81495.1 - 0.00062 20.0 0.0 0.0016 18.6 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 ABA81495.1 - 0.00092 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 ABA81495.1 - 0.001 18.8 0.1 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 ABA81495.1 - 0.0012 18.8 0.1 0.0028 17.6 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 ABA81495.1 - 0.0025 17.7 0.1 0.0057 16.5 0.1 1.7 1 0 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.19 ABA81495.1 - 0.0037 16.6 0.0 0.0057 16.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 ABA81495.1 - 0.0075 16.8 0.0 0.014 16.0 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.6 ABA81495.1 - 0.032 14.5 0.1 0.077 13.2 0.1 1.8 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 ABA81495.1 - 0.1 13.2 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase BKACE PF05853.12 ABA81496.1 - 1.6e-102 342.5 0.0 1.8e-102 342.3 0.0 1.0 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme Peripla_BP_6 PF13458.6 ABA81497.1 - 9.9e-59 199.7 5.8 1.2e-58 199.4 5.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 ABA81497.1 - 1.9e-17 63.3 0.0 3.1e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 ABA81497.1 - 2.2e-09 36.9 0.0 4e-09 36.0 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region BPD_transp_2 PF02653.16 ABA81498.1 - 2.1e-31 109.1 44.7 2.5e-31 108.8 44.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 ABA81499.1 - 4.4e-34 117.9 31.7 7.2e-34 117.2 31.7 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PIG-Y PF15159.6 ABA81499.1 - 1.5 9.7 5.7 9.7 7.2 5.1 2.7 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y ABC_tran PF00005.27 ABA81500.1 - 4.4e-28 98.5 0.0 5.9e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81500.1 - 1.8e-08 34.6 1.2 0.00013 21.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 ABA81500.1 - 3e-07 30.2 0.1 6.2e-07 29.2 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 ABA81500.1 - 3.7e-05 23.4 0.0 6.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA81500.1 - 0.00016 21.1 0.0 0.00028 20.4 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 ABA81500.1 - 0.00021 21.3 0.0 0.00042 20.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.6 ABA81500.1 - 0.00024 21.7 0.1 0.00034 21.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 ABA81500.1 - 0.0003 20.6 0.1 0.0013 18.5 0.1 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 ABA81500.1 - 0.00051 20.0 0.0 0.00086 19.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 ABA81500.1 - 0.0032 17.2 0.1 0.0053 16.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 ABA81500.1 - 0.0034 17.2 0.1 0.11 12.2 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 ABA81500.1 - 0.0038 17.6 0.9 0.029 14.8 0.9 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 ABA81500.1 - 0.0057 16.3 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA81500.1 - 0.02 15.1 0.2 0.055 13.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.8 ABA81500.1 - 0.05 12.9 0.0 0.073 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA PF00004.29 ABA81500.1 - 0.05 14.0 0.1 0.17 12.3 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 ABA81500.1 - 0.077 13.2 0.1 0.15 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 ABA81500.1 - 0.11 11.3 0.1 0.41 9.5 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain ABC_ATPase PF09818.9 ABA81500.1 - 0.39 9.4 2.2 1.2 7.9 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.27 ABA81501.1 - 9.6e-29 100.6 0.0 1.2e-28 100.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81501.1 - 1.5e-08 34.9 2.8 0.00026 20.9 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 ABA81501.1 - 0.00058 19.6 0.1 0.0015 18.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA81501.1 - 0.00062 19.3 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 ABA81501.1 - 0.0058 16.7 0.7 0.026 14.6 0.4 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 ABA81501.1 - 0.029 14.9 0.0 0.041 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA81501.1 - 0.031 14.2 0.2 0.071 13.0 0.2 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 ABA81501.1 - 0.036 14.3 0.4 0.29 11.4 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 ABA81501.1 - 0.042 13.4 0.0 0.098 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 ABA81501.1 - 0.088 12.0 0.1 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.9 ABA81501.1 - 0.17 10.7 0.1 2.5 6.8 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 ABA81501.1 - 0.17 11.5 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 ABA81501.1 - 0.17 11.9 0.1 0.26 11.3 0.1 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 ABA81501.1 - 0.18 11.7 0.1 0.34 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 ABA81501.1 - 0.19 10.3 0.0 0.24 10.0 0.0 1.0 1 0 0 1 1 1 0 AAA domain adh_short_C2 PF13561.6 ABA81502.1 - 6.3e-59 199.4 0.7 7.7e-59 199.1 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81502.1 - 4.1e-53 179.8 0.4 5.1e-53 179.4 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81502.1 - 2.6e-09 37.3 0.9 7.9e-09 35.7 0.9 2.0 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 ABA81502.1 - 0.069 13.0 0.4 0.14 12.1 0.4 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 ABA81502.1 - 0.1 12.0 0.2 1.5 8.2 0.1 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Abhydrolase_1 PF00561.20 ABA81503.1 - 7.1e-29 101.2 0.0 7.6e-22 78.2 0.1 2.0 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA81503.1 - 3.6e-19 69.0 0.0 6.5e-19 68.1 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 ABA81503.1 - 4.6e-18 66.6 0.3 5.6e-18 66.4 0.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 ABA81503.1 - 2e-06 27.6 0.0 8.2e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Ndr PF03096.14 ABA81503.1 - 0.0068 15.1 0.0 0.0081 14.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 ABA81503.1 - 0.014 15.5 0.0 0.032 14.3 0.0 1.6 2 0 0 2 2 2 0 TAP-like protein Esterase_phd PF10503.9 ABA81503.1 - 0.097 12.1 0.1 0.26 10.7 0.0 1.7 3 0 0 3 3 3 0 Esterase PHB depolymerase DUF2048 PF09752.9 ABA81503.1 - 0.11 11.6 0.3 0.16 11.0 0.3 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 FSH1 PF03959.13 ABA81503.1 - 0.13 11.9 0.0 0.28 10.8 0.0 1.6 1 1 0 1 1 1 0 Serine hydrolase (FSH1) 3HCDH_RFF PF18321.1 ABA81503.1 - 0.17 12.3 0.0 0.47 10.9 0.0 1.7 2 0 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Palm_thioest PF02089.15 ABA81503.1 - 0.19 11.6 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase adh_short_C2 PF13561.6 ABA81504.1 - 1.7e-59 201.2 7.3 2e-59 201.0 7.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81504.1 - 1.9e-54 184.1 0.9 2.5e-54 183.7 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81504.1 - 2.9e-15 56.6 0.8 4.7e-15 56.0 0.8 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA81504.1 - 0.00049 19.6 1.7 0.0021 17.6 1.7 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 ABA81504.1 - 0.0016 18.7 0.6 0.0057 16.9 0.6 2.0 1 0 0 1 1 1 1 TrkA-N domain Polysacc_synt_2 PF02719.15 ABA81504.1 - 0.014 14.6 0.3 0.022 13.9 0.3 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 ABA81504.1 - 0.016 15.1 0.8 0.024 14.5 0.8 1.4 1 0 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 ABA81504.1 - 0.06 13.2 0.7 0.11 12.4 0.7 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 ABA81504.1 - 0.078 12.1 0.1 0.15 11.2 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Shikimate_DH PF01488.20 ABA81504.1 - 0.099 12.7 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase LysR_substrate PF03466.20 ABA81505.2 - 2.7e-37 128.2 5.2 3.8e-37 127.7 5.2 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81505.2 - 1.8e-23 82.2 2.1 2.5e-23 81.8 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 ABA81505.2 - 0.0021 17.6 0.2 0.0078 15.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TetR_C_22 PF17928.1 ABA81505.2 - 0.054 13.8 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_11 PF08279.12 ABA81505.2 - 0.12 12.4 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain adh_short_C2 PF13561.6 ABA81506.1 - 4.6e-64 216.2 4.6 5.3e-64 216.0 4.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81506.1 - 1.1e-59 201.2 1.7 1.4e-59 200.9 1.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81506.1 - 3.7e-14 53.0 1.1 5.7e-14 52.4 1.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA81506.1 - 0.0066 15.9 0.2 0.016 14.6 0.1 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 ABA81506.1 - 0.017 15.0 1.1 0.029 14.3 1.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 ABA81506.1 - 0.062 13.4 0.3 0.23 11.5 0.2 2.0 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF1776 PF08643.10 ABA81506.1 - 0.07 12.5 0.0 0.093 12.1 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) THF_DHG_CYH_C PF02882.19 ABA81506.1 - 0.075 12.4 0.2 0.2 10.9 0.1 1.8 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Methyltransf_24 PF13578.6 ABA81506.1 - 0.21 12.6 0.8 4.6 8.3 0.1 2.2 2 0 0 2 2 2 0 Methyltransferase domain Flavin_Reduct PF01613.18 ABA81507.1 - 5.7e-32 110.9 0.0 6.5e-32 110.7 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain SIS PF01380.22 ABA81508.1 - 3.5e-09 36.6 0.0 1.2e-06 28.4 0.0 2.5 2 1 0 2 2 2 2 SIS domain SIS_2 PF13580.6 ABA81508.1 - 0.046 13.7 0.2 0.12 12.4 0.1 1.9 2 1 0 2 2 2 0 SIS domain Lyase_1 PF00206.20 ABA81509.1 - 2.3e-45 155.3 0.0 3.3e-45 154.8 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 ABA81509.1 - 6.8e-17 62.0 1.7 8.7e-17 61.6 0.2 2.1 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal BPD_transp_1 PF00528.22 ABA81511.1 - 3.3e-13 49.8 9.5 4.1e-13 49.5 9.5 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 ABA81512.1 - 1.4e-12 47.8 10.5 1.4e-12 47.8 10.5 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF981 PF06168.11 ABA81512.1 - 0.69 9.8 13.3 0.18 11.7 8.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF981) SBP_bac_3 PF00497.20 ABA81513.1 - 4.8e-41 140.7 0.0 6.3e-41 140.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 ABA81513.1 - 0.012 15.8 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 ABA81513.1 - 0.047 13.6 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 NMT1/THI5 like Transferrin PF00405.17 ABA81513.1 - 0.049 12.8 0.0 0.078 12.1 0.0 1.2 1 0 0 1 1 1 0 Transferrin ABC_tran PF00005.27 ABA81514.1 - 4.8e-37 127.5 0.0 6.2e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81514.1 - 3.1e-10 40.4 0.0 3.6e-06 27.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81514.1 - 3.1e-07 30.1 0.0 7.1e-07 28.9 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81514.1 - 0.00028 20.6 0.0 0.00048 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81514.1 - 0.00042 20.7 0.0 0.00061 20.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 ABA81514.1 - 0.00062 20.1 0.0 0.0016 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 ABA81514.1 - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 ABA81514.1 - 0.0036 17.8 0.0 0.0066 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 ABA81514.1 - 0.004 16.6 0.0 0.018 14.4 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 ABA81514.1 - 0.0061 16.5 0.2 0.011 15.6 0.2 1.4 1 0 0 1 1 1 1 NTPase AAA_33 PF13671.6 ABA81514.1 - 0.0082 16.3 0.1 0.017 15.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 ABA81514.1 - 0.012 16.2 0.0 0.017 15.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 ABA81514.1 - 0.012 15.4 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA81514.1 - 0.014 15.2 0.0 3.6 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 ABA81514.1 - 0.015 14.7 0.1 0.098 12.0 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA PF00004.29 ABA81514.1 - 0.016 15.6 0.0 1.9 8.9 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TK PF00265.18 ABA81514.1 - 0.027 14.3 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 Thymidine kinase RNA_helicase PF00910.22 ABA81514.1 - 0.04 14.3 0.0 0.18 12.2 0.0 1.9 2 0 0 2 2 2 0 RNA helicase T2SSE PF00437.20 ABA81514.1 - 0.044 12.8 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 ABA81514.1 - 0.048 13.9 0.0 0.38 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 ABA81514.1 - 0.051 13.8 0.4 0.88 9.9 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 ABA81514.1 - 0.056 13.4 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea G-alpha PF00503.20 ABA81514.1 - 0.061 12.5 0.0 0.098 11.8 0.0 1.2 1 1 0 1 1 1 0 G-protein alpha subunit Rad17 PF03215.15 ABA81514.1 - 0.063 13.2 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain IIGP PF05049.13 ABA81514.1 - 0.069 12.2 0.1 0.098 11.7 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_24 PF13479.6 ABA81514.1 - 0.077 12.7 0.0 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 ABA81514.1 - 0.082 11.7 0.0 1.3 7.7 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Diphthami_syn_2 PF01902.17 ABA81514.1 - 0.092 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase RE_AspBHI_N PF18062.1 ABA81514.1 - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease AspBHI N-terminal AAA_13 PF13166.6 ABA81514.1 - 0.12 11.1 0.0 5.1 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 ABA81514.1 - 0.12 12.6 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_27 PF13514.6 ABA81514.1 - 0.13 11.8 0.0 0.95 9.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 ABA81514.1 - 0.19 11.5 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 ABA81514.1 - 0.19 12.0 0.1 0.26 11.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain Asparaginase PF00710.20 ABA81515.1 - 1.5e-42 145.3 0.0 2e-42 144.9 0.0 1.2 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 ABA81515.1 - 7.1e-17 61.7 0.1 2.4e-16 60.0 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain UTRA PF07702.13 ABA81516.1 - 1.1e-24 86.9 0.0 1.6e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 ABA81516.1 - 4.4e-14 51.9 0.3 8.5e-14 51.0 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.6 ABA81516.1 - 4.7e-07 29.4 0.1 4.9e-06 26.1 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 ABA81516.1 - 0.004 17.5 0.0 0.031 14.6 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 ABA81516.1 - 0.056 13.4 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.27 ABA81517.1 - 3.6e-31 108.5 0.0 5.6e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 ABA81517.1 - 5.4e-10 39.9 0.3 1.7e-09 38.3 0.3 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 ABA81517.1 - 2.5e-08 34.1 0.0 0.00011 22.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 ABA81517.1 - 5.6e-08 32.8 0.0 1.8e-07 31.2 0.0 2.0 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 ABA81517.1 - 0.00013 22.4 1.1 0.00045 20.7 0.5 2.5 2 0 0 2 2 1 1 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 ABA81517.1 - 0.00022 21.2 0.0 0.00045 20.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 ABA81517.1 - 0.00047 19.6 0.0 0.0078 15.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 ABA81517.1 - 0.00067 20.2 0.0 0.00098 19.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA81517.1 - 0.00081 19.1 0.1 0.0016 18.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81517.1 - 0.00089 19.7 0.1 0.0016 18.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA81517.1 - 0.0034 17.8 0.0 0.0077 16.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 ABA81517.1 - 0.0096 16.2 0.0 0.021 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA81517.1 - 0.011 16.0 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 ABA81517.1 - 0.011 15.3 0.1 0.044 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 ABA81517.1 - 0.011 15.9 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 ABA81517.1 - 0.014 15.1 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 ABA81517.1 - 0.02 14.9 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.15 ABA81517.1 - 0.045 13.7 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 ABA81517.1 - 0.052 14.1 0.0 0.086 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA81517.1 - 0.056 13.4 0.0 0.099 12.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 ABA81517.1 - 0.095 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 ABA81517.1 - 0.12 12.7 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase TOBE PF03459.17 ABA81517.1 - 0.13 12.6 1.4 0.66 10.3 0.1 2.9 3 1 0 3 3 3 0 TOBE domain ATPase_2 PF01637.18 ABA81517.1 - 0.14 12.1 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 ABA81517.1 - 0.15 11.2 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 ABA81517.1 - 0.16 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 ABA81517.1 - 0.18 11.5 0.0 0.43 10.3 0.0 1.5 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation AAA_27 PF13514.6 ABA81517.1 - 0.19 11.3 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain DAO PF01266.24 ABA81518.1 - 1.6e-53 182.6 8.5 2.1e-53 182.2 8.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 ABA81518.1 - 4.6e-05 22.8 0.2 7.5e-05 22.1 0.2 1.2 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 ABA81518.1 - 8.5e-05 22.7 0.1 0.00021 21.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 ABA81518.1 - 0.001 18.2 0.1 0.0015 17.6 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 ABA81518.1 - 0.0037 16.5 0.0 0.036 13.3 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 ABA81518.1 - 0.01 14.5 0.0 0.45 9.2 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_2 PF00890.24 ABA81518.1 - 0.018 14.1 3.1 0.2 10.7 3.1 2.1 1 1 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.6 ABA81518.1 - 0.035 14.1 0.1 0.11 12.5 0.1 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 ABA81518.1 - 0.089 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.14 ABA81518.1 - 0.095 11.5 0.1 0.13 11.0 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase PfkB PF00294.24 ABA81519.1 - 2.1e-25 89.6 0.0 1.3e-13 50.9 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase AP_endonuc_2 PF01261.24 ABA81520.1 - 3.3e-31 108.4 0.5 4.3e-31 108.0 0.5 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1098 PF06497.11 ABA81520.1 - 0.22 12.0 0.0 0.38 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) BPD_transp_1 PF00528.22 ABA81521.1 - 8.6e-21 74.5 10.1 8.6e-21 74.5 10.1 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3566 PF12089.8 ABA81521.1 - 0.073 13.4 0.3 0.073 13.4 0.3 2.2 2 1 0 2 2 2 0 Transmembrane domain of unknown function (DUF3566) BPD_transp_1 PF00528.22 ABA81522.1 - 1.8e-17 63.7 7.0 1.8e-17 63.7 7.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4149 PF13664.6 ABA81522.1 - 0.053 13.8 0.1 0.053 13.8 0.1 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4149) DUF3176 PF11374.8 ABA81522.1 - 0.16 12.2 6.9 0.12 12.6 0.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3176) SBP_bac_1 PF01547.25 ABA81523.1 - 1.4e-31 110.7 5.6 2.2e-31 110.0 5.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 ABA81523.1 - 5.4e-27 95.3 1.5 8.2e-27 94.7 1.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VbhA PF18495.1 ABA81523.1 - 0.036 13.9 0.1 0.078 12.9 0.1 1.6 1 0 0 1 1 1 0 Antitoxin VbhA DUF3918 PF13056.6 ABA81523.1 - 3.9 7.2 5.2 2.9 7.6 2.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3918) Glyco_transf_4 PF13439.6 ABA81524.1 - 0.034 14.2 1.9 0.097 12.7 1.9 1.7 1 1 0 1 1 1 0 Glycosyltransferase Family 4 SIS PF01380.22 ABA81524.1 - 0.15 11.9 0.0 0.79 9.6 0.0 2.1 2 1 0 2 2 2 0 SIS domain Peripla_BP_3 PF13377.6 ABA81525.1 - 4.8e-36 124.6 1.0 4.8e-36 124.6 1.0 2.1 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 ABA81525.1 - 1.7e-26 93.3 0.0 2.2e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 ABA81525.1 - 2.2e-14 53.7 0.0 6.8e-14 52.1 0.0 1.7 2 0 0 2 2 2 1 Periplasmic binding protein domain LacI PF00356.21 ABA81525.1 - 9.3e-11 41.4 2.0 1.3e-10 40.9 0.5 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family MarR_2 PF12802.7 ABA81525.1 - 0.0017 18.2 1.2 0.14 12.1 0.2 3.2 2 0 0 2 2 2 1 MarR family TetR_N PF00440.23 ABA81525.1 - 0.86 9.4 4.4 0.87 9.4 1.9 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family PGM_PMM_I PF02878.16 ABA81527.1 - 7.1e-29 100.3 0.0 1.9e-28 98.9 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 ABA81527.1 - 7.5e-10 39.0 0.0 1.8e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 ABA81527.1 - 5.6e-09 36.6 0.0 1.6e-08 35.1 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 ABA81527.1 - 5.7e-08 32.8 0.1 1.5e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain MannoseP_isomer PF01050.18 ABA81528.1 - 2.7e-61 205.9 0.1 3.7e-61 205.4 0.1 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 ABA81528.1 - 3.4e-53 180.8 0.0 9.2e-53 179.4 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 ABA81528.1 - 1.3e-11 44.0 0.3 2.2e-11 43.3 0.3 1.4 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 ABA81528.1 - 2.2e-07 31.4 0.5 2.2e-07 31.4 0.5 2.0 3 0 0 3 3 3 1 MobA-like NTP transferase domain Caps_assemb_Wzi PF14052.6 ABA81529.1 - 3e-47 161.5 0.1 4.1e-47 161.1 0.1 1.0 1 0 0 1 1 1 1 Capsule assembly protein Wzi Histone_HNS PF00816.21 ABA81530.1 - 5.4e-20 72.0 1.7 6.6e-20 71.7 1.7 1.1 1 0 0 1 1 1 1 H-NS histone family SBP_bac_11 PF13531.6 ABA81530.1 - 0.06 13.1 0.1 0.068 12.9 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Histone_HNS PF00816.21 ABA81531.1 - 1.9e-24 86.3 2.5 2.2e-24 86.1 2.5 1.0 1 0 0 1 1 1 1 H-NS histone family K-box PF01486.17 ABA81531.1 - 0.0075 16.4 1.3 0.012 15.7 1.3 1.4 1 0 0 1 1 1 1 K-box region PEGA PF08308.11 ABA81533.2 - 0.076 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 PEGA domain HipA_C PF07804.12 ABA81535.1 - 4e-38 131.2 0.0 5.5e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 HipA-like C-terminal domain Couple_hipA PF13657.6 ABA81535.1 - 1.3e-18 67.4 0.0 3.2e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 HipA N-terminal domain MotA_activ PF09114.10 ABA81535.1 - 0.17 12.0 0.0 0.29 11.3 0.0 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain BLUF PF04940.12 ABA81536.1 - 3.7e-25 87.9 0.0 4.6e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 Sensors of blue-light using FAD Plant_tran PF04827.14 ABA81536.1 - 0.05 13.2 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 Plant transposon protein LPD26 PF18842.1 ABA81538.1 - 0.052 13.5 0.1 0.19 11.8 0.1 1.9 1 0 0 1 1 1 0 Large polyvalent protein associated domain 26 YadA_anchor PF03895.15 ABA81538.1 - 0.065 13.4 0.1 0.28 11.3 0.1 2.1 1 0 0 1 1 1 0 YadA-like membrane anchor domain FAD_oxidored PF12831.7 ABA81538.1 - 0.11 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DDE_Tnp_1_assoc PF13808.6 ABA81545.1 - 0.19 11.8 0.0 0.46 10.5 0.0 1.6 2 0 0 2 2 2 0 DDE_Tnp_1-associated Peptidase_C14 PF00656.22 ABA81547.1 - 6e-21 75.5 0.0 8.5e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Caspase domain DUF4148 PF13663.6 ABA81547.1 - 1.7 8.9 0.0 1.7 8.9 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4148) HTH_31 PF13560.6 ABA81551.1 - 2.7e-14 53.2 1.5 2.7e-14 53.2 1.5 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 ABA81551.1 - 1.5e-13 50.6 1.2 5.7e-12 45.5 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix HTH_19 PF12844.7 ABA81551.1 - 8e-08 32.2 0.1 2.2e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 ABA81551.1 - 4.2e-05 23.0 0.1 8.8e-05 22.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 ABA81551.1 - 0.00038 20.8 0.1 0.00078 19.8 0.0 1.6 2 0 0 2 2 1 1 Cro/C1-type HTH DNA-binding domain HTH_IclR PF09339.10 ABA81551.1 - 0.0022 17.8 0.2 0.0078 16.0 0.2 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 ABA81551.1 - 0.0075 16.2 0.5 0.018 15.0 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TnsD PF15978.5 ABA81551.1 - 0.008 15.2 0.0 0.0087 15.1 0.0 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_AsnC-type PF13404.6 ABA81551.1 - 0.014 15.2 4.0 0.26 11.2 0.1 3.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 ABA81551.1 - 0.016 15.0 0.1 0.044 13.7 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_35 PF13693.6 ABA81551.1 - 0.019 15.0 0.1 0.063 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 ABA81551.1 - 0.047 13.5 1.5 0.093 12.6 0.5 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_38 PF13936.6 ABA81551.1 - 0.06 13.1 1.1 0.24 11.2 0.4 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 ABA81551.1 - 0.063 13.0 0.1 0.46 10.2 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_11 PF08279.12 ABA81551.1 - 0.07 13.1 0.1 0.21 11.5 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.6 ABA81551.1 - 0.072 13.1 1.3 0.34 11.0 0.2 2.5 2 0 0 2 2 2 0 Winged helix-turn helix HTH_37 PF13744.6 ABA81551.1 - 0.091 12.7 0.0 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 ABA81551.1 - 0.1 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA RHH_1 PF01402.21 ABA81551.1 - 4.5 7.4 10.0 0.25 11.3 1.2 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family MazE_antitoxin PF04014.18 ABA81554.1 - 0.00064 19.6 0.1 0.00098 19.0 0.1 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 ABA81555.1 - 6.8e-20 71.8 0.0 7.6e-20 71.6 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 ABA81555.1 - 0.0043 17.8 0.0 0.0051 17.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain E1-E2_ATPase PF00122.20 ABA81556.1 - 9.7e-51 171.9 1.1 9.7e-51 171.9 1.1 3.5 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 ABA81556.1 - 1.1e-38 132.8 9.5 1.1e-38 132.8 9.5 2.2 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 ABA81556.1 - 1.3e-24 87.7 1.5 3.4e-24 86.3 1.5 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 ABA81556.1 - 4.8e-17 61.4 1.1 1.1e-16 60.2 0.0 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 ABA81556.1 - 1.9e-12 47.1 0.0 4e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 ABA81556.1 - 6.7e-05 22.7 0.8 0.00028 20.7 0.7 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 ABA81556.1 - 7.4e-05 23.2 0.6 0.00028 21.3 0.6 2.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase TPR_11 PF13414.6 ABA81557.2 - 1.6e-44 149.3 17.9 1.1e-09 37.8 0.2 6.2 1 1 5 6 6 6 5 TPR repeat TPR_1 PF00515.28 ABA81557.2 - 3.4e-37 124.7 21.5 4.1e-07 29.6 0.0 7.0 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 ABA81557.2 - 8.2e-31 103.6 28.6 1.7e-06 27.7 0.1 7.4 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.6 ABA81557.2 - 3.6e-27 92.3 13.4 0.00021 21.3 0.0 6.6 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.6 ABA81557.2 - 4.8e-22 76.7 13.1 0.00091 19.4 0.1 5.7 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 ABA81557.2 - 6.8e-19 68.2 29.7 5.8e-09 36.5 6.9 4.9 3 2 2 5 5 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 ABA81557.2 - 2.8e-16 58.8 25.8 9.8e-06 26.0 1.0 6.9 3 1 4 7 7 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 ABA81557.2 - 1.2e-15 57.6 30.2 8e-06 26.1 5.0 5.7 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 ABA81557.2 - 1.5e-14 54.2 20.8 6.8e-05 23.3 3.5 4.6 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 ABA81557.2 - 3.2e-14 51.8 19.1 0.0094 15.9 0.3 6.8 6 0 0 6 6 6 5 Tetratricopeptide repeat Glyco_transf_41 PF13844.6 ABA81557.2 - 4.8e-13 48.4 0.0 1.2e-08 33.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 41 TPR_10 PF13374.6 ABA81557.2 - 2.4e-10 39.9 31.5 0.0004 20.2 0.4 6.4 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 ABA81557.2 - 8.1e-08 32.3 22.3 2.6e-05 24.3 2.8 5.3 3 1 3 6 6 6 2 Tetratricopeptide repeat EST1_DNA_bind PF10373.9 ABA81557.2 - 1.5e-05 24.6 10.5 0.014 14.9 1.2 3.2 3 1 0 3 3 3 2 Est1 DNA/RNA binding domain BTAD PF03704.17 ABA81557.2 - 0.00018 22.0 14.3 0.0016 18.9 5.5 2.9 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_15 PF13429.6 ABA81557.2 - 0.00038 19.8 4.6 0.29 10.3 0.2 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_4 PF07721.14 ABA81557.2 - 0.00038 20.8 19.8 0.06 14.0 0.4 5.5 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_5 PF12688.7 ABA81557.2 - 0.00076 19.7 5.8 0.16 12.2 0.7 2.8 1 1 0 2 2 2 2 Tetratrico peptide repeat TPR_6 PF13174.6 ABA81557.2 - 0.00083 19.8 9.2 31 5.5 0.0 5.9 5 0 0 5 5 5 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 ABA81557.2 - 0.0058 16.6 2.5 0.59 10.0 0.1 2.4 1 1 1 2 2 2 2 Virulence factor membrane-bound polymerase, C-terminal Optomotor-blind PF11078.8 ABA81557.2 - 0.035 14.7 1.0 1.3 9.6 1.5 2.8 1 1 1 2 2 2 0 Optomotor-blind protein N-terminal region ANAPC3 PF12895.7 ABA81557.2 - 0.096 12.9 0.2 0.096 12.9 0.2 2.9 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF627 PF04781.12 ABA81557.2 - 0.65 10.0 3.9 1.9 8.6 0.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF627) TPR_20 PF14561.6 ABA81557.2 - 0.85 10.0 6.3 0.74 10.2 2.0 2.8 1 1 2 3 3 3 0 Tetratricopeptide repeat DUF2384 PF09722.10 ABA81558.2 - 2.8e-06 27.3 0.0 5.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2384) HTH_31 PF13560.6 ABA81558.2 - 0.0073 16.6 0.1 0.015 15.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 ABA81558.2 - 0.1 12.6 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RES PF08808.11 ABA81559.1 - 5.4e-26 91.4 0.6 8.3e-26 90.8 0.6 1.3 1 0 0 1 1 1 1 RES domain Acyl_transf_3 PF01757.22 ABA81560.1 - 2.1e-25 89.5 38.1 2.7e-25 89.2 38.1 1.1 1 0 0 1 1 1 1 Acyltransferase family Kinocilin PF15033.6 ABA81560.1 - 0.0013 18.3 0.8 0.0036 16.9 0.8 1.7 1 0 0 1 1 1 1 Kinocilin protein Gly-zipper_YMGG PF13441.6 ABA81561.1 - 8e-05 22.3 16.3 0.00016 21.4 16.3 1.4 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 ABA81561.1 - 0.00016 21.6 15.9 0.0003 20.7 15.9 1.4 1 0 0 1 1 1 1 Glycine zipper TraT PF05818.12 ABA81561.1 - 0.035 13.8 2.5 0.068 12.9 2.6 1.4 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein Rick_17kDa_Anti PF05433.15 ABA81561.1 - 0.64 9.9 20.4 1.7 8.6 3.5 2.1 1 1 1 2 2 2 0 Glycine zipper 2TM domain ATPase_gene1 PF09527.10 ABA81561.1 - 1.4 9.2 5.7 0.66 10.2 1.9 2.0 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter GNVR PF13807.6 ABA81562.1 - 1.5e-25 88.9 0.5 3.1e-25 87.9 0.0 1.8 2 0 0 2 2 1 1 G-rich domain on putative tyrosine kinase Wzz PF02706.15 ABA81562.1 - 1e-13 51.4 0.0 2.5e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Chain length determinant protein CbiA PF01656.23 ABA81562.1 - 1.8e-06 28.0 0.0 6.2e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 ABA81562.1 - 2.1e-05 24.5 0.0 7.3e-05 22.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 ABA81562.1 - 3e-05 23.4 0.0 0.00067 19.0 0.0 2.7 2 1 0 2 2 2 1 ATPase MipZ ParA PF10609.9 ABA81562.1 - 0.00021 20.8 0.0 0.00037 20.0 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Occludin_ELL PF07303.13 ABA81562.1 - 0.15 12.8 1.7 0.14 12.9 0.4 1.6 2 0 0 2 2 1 0 Occludin homology domain FapA PF03961.13 ABA81562.1 - 0.16 10.6 0.7 0.22 10.1 0.7 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A FPP PF05911.11 ABA81562.1 - 0.17 10.1 2.1 0.22 9.7 2.1 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil CHDCT2 PF08074.11 ABA81562.1 - 0.29 11.3 0.7 0.48 10.6 0.7 1.3 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain Filament PF00038.21 ABA81562.1 - 0.35 10.4 7.2 0.52 9.9 7.2 1.1 1 0 0 1 1 1 0 Intermediate filament protein SKA2 PF16740.5 ABA81562.1 - 0.48 10.2 5.5 3 7.7 0.7 2.4 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF2802 PF10975.8 ABA81562.1 - 2.3 8.4 11.8 13 6.0 0.7 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) Uso1_p115_C PF04871.13 ABA81562.1 - 2.6 8.4 5.7 17 5.8 5.7 2.1 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region LMWPc PF01451.21 ABA81563.2 - 8.3e-30 104.0 0.0 9.4e-30 103.9 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Poly_export PF02563.16 ABA81564.1 - 4.2e-25 87.8 0.0 9.8e-24 83.4 0.0 3.2 5 1 0 5 5 5 1 Polysaccharide biosynthesis/export protein SLBB PF10531.9 ABA81564.1 - 1e-14 54.1 2.7 2e-09 37.2 0.3 2.6 2 0 0 2 2 2 2 SLBB domain Wza_C PF18412.1 ABA81564.1 - 5e-05 23.0 0.1 0.00012 21.8 0.0 1.7 2 0 0 2 2 2 1 Outer-membrane lipoprotein Wza C-terminal domain Hexapep PF00132.24 ABA81565.1 - 1.4e-11 43.6 9.9 3.5e-05 23.3 0.2 4.2 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA81565.1 - 1.6e-07 30.9 6.6 0.0047 16.7 0.4 3.3 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Glycos_transf_1 PF00534.20 ABA81566.2 - 3.1e-24 85.4 0.0 5.2e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 ABA81566.2 - 6e-21 75.3 0.0 1.2e-20 74.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA81566.2 - 3.7e-15 56.4 2.5 1.2e-13 51.4 0.7 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 ABA81566.2 - 1.5e-14 54.8 3.1 1.5e-14 54.8 3.1 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 ABA81566.2 - 0.18 12.2 0.2 0.53 10.7 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 YiaAB PF05360.14 ABA81567.1 - 0.0053 17.0 3.2 0.92 9.8 0.2 3.9 3 0 0 3 3 3 2 yiaA/B two helix domain GWT1 PF06423.12 ABA81567.1 - 1.4 9.0 5.8 14 5.8 5.8 2.6 1 1 0 1 1 1 0 GWT1 Hexapep PF00132.24 ABA81568.1 - 1.2e-05 24.9 17.4 0.009 15.7 0.2 5.3 5 2 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 ABA81568.1 - 0.00047 19.8 13.4 0.14 12.0 0.1 4.7 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase Methyltransf_11 PF08241.12 ABA81570.1 - 1.8e-11 44.5 0.0 3.1e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA81570.1 - 2.2e-06 27.6 0.0 2.8e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA81570.1 - 9.2e-06 26.3 0.0 2.9e-05 24.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA81570.1 - 1.3e-05 25.9 0.0 2.6e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 ABA81570.1 - 0.00036 20.4 0.0 0.00075 19.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 ABA81570.1 - 0.0022 17.9 0.1 0.013 15.4 0.0 2.1 1 1 1 2 2 2 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 ABA81570.1 - 0.0085 15.4 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_29 PF03141.16 ABA81570.1 - 0.022 13.3 0.0 0.026 13.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF2433 PF10360.9 ABA81571.1 - 0.09 12.9 0.0 0.09 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2433) Mob_Pre PF01076.19 ABA81572.1 - 0.00021 21.2 0.0 0.00061 19.7 0.0 1.8 1 1 0 1 1 1 1 Plasmid recombination enzyme DUF3552 PF12072.8 ABA81572.1 - 0.019 14.4 15.0 0.048 13.1 15.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) MetOD1 PF18546.1 ABA81572.1 - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Metanogen output domain 1 PemK_toxin PF02452.17 ABA81573.1 - 7.6e-05 23.1 0.0 0.00013 22.3 0.0 1.4 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system Resolvase PF00239.21 ABA81576.1 - 2.3e-24 86.2 0.1 6.9e-24 84.6 0.1 1.9 1 0 0 1 1 1 1 Resolvase, N terminal domain Recombinase PF07508.13 ABA81576.1 - 6.8e-22 77.8 0.0 1.3e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 Recombinase Zn_ribbon_recom PF13408.6 ABA81576.1 - 2.4e-09 37.6 3.6 4.2e-09 36.8 3.6 1.4 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain DUF3458_C PF17432.2 ABA81576.1 - 0.016 14.6 0.4 0.03 13.7 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3458_C) ARM repeats PhoU PF01895.19 ABA81576.1 - 0.52 10.8 3.5 1.4 9.4 0.1 2.8 3 0 0 3 3 3 0 PhoU domain Arg_decarbox_C PF17944.1 ABA81576.1 - 5.2 7.7 5.6 8.2 7.1 0.2 3.7 5 0 0 5 5 5 0 Arginine decarboxylase C-terminal helical extension Epimerase PF01370.21 ABA81577.1 - 1.5e-74 250.5 0.0 1.7e-74 250.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA81577.1 - 1.4e-17 64.2 0.0 1.9e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 ABA81577.1 - 3.4e-09 36.2 0.0 6e-09 35.4 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 ABA81577.1 - 1.4e-05 25.1 0.0 0.0002 21.3 0.0 2.1 2 0 0 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 ABA81577.1 - 0.0012 18.1 0.0 0.0054 15.9 0.0 1.9 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Peripla_BP_6 PF13458.6 ABA81577.1 - 0.028 14.1 0.6 0.4 10.3 0.6 2.1 1 1 0 1 1 1 0 Periplasmic binding protein CofC PF01983.16 ABA81577.1 - 0.084 12.0 0.0 0.23 10.6 0.0 1.6 2 0 0 2 2 2 0 Guanylyl transferase CofC like GDP_Man_Dehyd PF16363.5 ABA81578.1 - 8.4e-159 528.3 0.0 9.5e-159 528.2 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 ABA81578.1 - 5.9e-75 251.8 0.0 7.1e-75 251.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA81578.1 - 1.1e-06 28.0 0.0 1.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 ABA81578.1 - 0.0014 17.8 0.0 0.002 17.3 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Glyco_transf_4 PF13439.6 ABA81578.1 - 0.028 14.4 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 NAD_binding_10 PF13460.6 ABA81578.1 - 0.11 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding Glycos_transf_2 PF00535.26 ABA81579.1 - 1.2e-22 80.5 0.0 1.8e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 ABA81579.1 - 1.4e-13 51.3 0.0 5.6e-13 49.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 ABA81579.1 - 1.2e-06 28.3 0.0 2.5e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Phi29_Phage_SSB PF17427.2 ABA81579.1 - 0.08 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Phage Single-stranded DNA-binding protein T2SSF PF00482.23 ABA81579.1 - 0.11 12.4 0.1 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F PIN PF01850.21 ABA81580.1 - 5e-08 33.5 0.0 5.8e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain DnaA_N PF11638.8 ABA81581.1 - 3.6e-06 26.6 0.0 5.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 DnaA N-terminal domain AAA_31 PF13614.6 ABA81582.1 - 4.5e-28 98.4 0.0 8.2e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 ABA81582.1 - 1.6e-15 57.3 0.0 2.2e-15 56.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA81582.1 - 1.5e-06 27.7 0.3 0.00023 20.5 0.1 2.7 3 0 0 3 3 3 1 ATPase MipZ CBP_BcsQ PF06564.12 ABA81582.1 - 3.3e-06 26.8 0.2 0.00094 18.7 0.0 2.8 3 0 0 3 3 3 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 ABA81582.1 - 6.5e-06 25.5 0.0 0.00079 18.7 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase ParA PF10609.9 ABA81582.1 - 1.1e-05 25.1 0.5 0.00012 21.6 0.1 2.5 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 ABA81582.1 - 0.0035 17.2 0.0 0.0077 16.0 0.0 1.6 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 ABA81582.1 - 0.0046 16.4 0.0 0.0077 15.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.17 ABA81582.1 - 0.0073 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 ABA81582.1 - 0.035 13.1 0.1 0.071 12.1 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ParBc PF02195.18 ABA81583.1 - 1.4e-08 34.9 2.6 2.9e-08 33.9 0.2 2.5 2 1 1 3 3 3 1 ParB-like nuclease domain Resolvase PF00239.21 ABA81584.1 - 2.7e-39 134.6 0.1 4.8e-39 133.8 0.1 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain Recombinase PF07508.13 ABA81584.1 - 0.023 15.1 0.0 0.056 13.8 0.0 1.6 2 0 0 2 2 2 0 Recombinase Heme_oxygenase PF01126.20 ABA81585.2 - 9.4e-07 28.8 0.0 2.3e-06 27.6 0.0 1.7 1 1 0 1 1 1 1 Heme oxygenase Haem_oxygenas_2 PF14518.6 ABA81585.2 - 0.015 15.1 0.0 0.024 14.4 0.0 1.4 1 1 0 1 1 1 0 Iron-containing redox enzyme EAL PF00563.20 ABA81586.1 - 2e-63 214.1 0.1 3.4e-63 213.4 0.1 1.4 1 0 0 1 1 1 1 EAL domain PHY PF00360.20 ABA81586.1 - 1.1e-49 168.3 0.1 1.7e-49 167.7 0.1 1.3 1 0 0 1 1 1 1 Phytochrome region GGDEF PF00990.21 ABA81586.1 - 6.7e-42 143.0 0.0 1.6e-41 141.8 0.0 1.7 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_2 PF08446.11 ABA81586.1 - 4.5e-20 72.3 0.0 2.5e-19 69.9 0.0 2.3 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 ABA81586.1 - 2.6e-15 57.2 0.1 1.2e-14 55.0 0.1 2.1 1 0 0 1 1 1 1 GAF domain PTCRA PF15028.6 ABA81586.1 - 0.076 12.7 0.3 0.64 9.7 0.1 2.3 2 0 0 2 2 2 0 Pre-T-cell antigen receptor SDH_C PF18317.1 ABA81586.1 - 0.1 12.4 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 Shikimate 5'-dehydrogenase C-terminal domain Romo1 PF10247.9 ABA81587.1 - 0.043 14.2 2.7 0.082 13.3 2.7 1.5 1 1 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 NapE PF06796.11 ABA81588.1 - 3.1e-24 84.2 4.2 3.4e-24 84.1 4.2 1.0 1 0 0 1 1 1 1 Periplasmic nitrate reductase protein NapE Fer4 PF00037.27 ABA81589.1 - 5.4e-20 70.3 37.5 7.3e-08 31.9 1.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 ABA81589.1 - 3.2e-18 66.0 25.4 9.8e-10 38.9 4.1 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 ABA81589.1 - 5.9e-15 55.2 27.0 1.5e-08 34.6 10.4 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 ABA81589.1 - 1.7e-13 50.0 39.8 2.7e-06 27.2 1.5 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 ABA81589.1 - 1e-11 44.2 36.6 3.2e-05 23.8 2.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 ABA81589.1 - 1.4e-11 44.3 31.4 8.9e-07 28.9 13.7 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 ABA81589.1 - 1.8e-11 44.8 32.1 0.0016 19.4 1.7 4.1 3 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 ABA81589.1 - 5.7e-10 39.2 26.2 0.002 18.3 1.2 3.3 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 ABA81589.1 - 1.4e-09 38.2 25.2 0.00068 20.0 0.2 4.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 ABA81589.1 - 1.7e-08 34.3 32.9 0.0055 17.1 3.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.6 ABA81589.1 - 1.9e-08 34.7 24.9 0.0013 19.2 0.3 4.1 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 ABA81589.1 - 1.4e-06 28.8 45.1 0.018 15.9 5.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.6 ABA81589.1 - 2.1e-06 28.4 27.4 0.00026 21.7 0.6 3.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 ABA81589.1 - 1.2e-05 26.1 18.1 0.034 15.0 0.1 4.0 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 ABA81589.1 - 0.0031 17.7 22.4 0.046 13.9 6.7 3.6 2 1 0 3 3 3 2 4Fe-4S dicluster domain DPBB_1 PF03330.18 ABA81589.1 - 0.16 12.2 2.4 0.33 11.3 0.4 2.5 2 1 0 2 2 2 0 Lytic transglycolase Fer4_13 PF13370.6 ABA81589.1 - 0.31 11.6 41.6 0.8 10.3 4.7 4.1 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I MDH PF02315.16 ABA81589.1 - 2.8 8.1 8.8 0.8 9.8 1.5 2.3 1 1 1 2 2 2 0 Methanol dehydrogenase beta subunit NapD PF03927.13 ABA81590.1 - 2.6e-22 78.7 0.4 2.9e-22 78.5 0.4 1.0 1 0 0 1 1 1 1 NapD protein Molybdopterin PF00384.22 ABA81591.1 - 5.5e-93 312.3 0.0 6.6e-93 312.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 ABA81591.1 - 4.7e-25 87.8 0.0 1.1e-24 86.6 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 ABA81591.1 - 4.7e-16 58.5 1.2 1.1e-15 57.3 1.2 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 ABA81591.1 - 2.3 8.2 12.5 0.028 14.3 4.8 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NapB PF03892.14 ABA81592.1 - 1e-45 154.9 0.0 1.2e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 Nitrate reductase cytochrome c-type subunit (NapB) Cytochrome_C7 PF14522.6 ABA81592.1 - 0.0024 17.9 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 ABA81592.1 - 0.003 17.2 0.1 3.3 7.5 0.0 2.3 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_NNT PF03264.14 ABA81592.1 - 0.047 13.4 0.9 0.11 12.2 0.9 1.5 1 1 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region DUF3918 PF13056.6 ABA81592.1 - 0.11 12.2 0.6 0.2 11.3 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) Cytochrome_C554 PF13435.6 ABA81592.1 - 0.12 13.3 0.5 0.43 11.5 0.5 1.8 1 1 1 2 2 2 0 Cytochrome c554 and c-prime Cytochrom_C PF00034.21 ABA81592.1 - 0.31 12.2 1.1 23 6.2 0.0 2.5 1 1 1 2 2 2 0 Cytochrome c Cytochrom_NNT PF03264.14 ABA81593.1 - 3.4e-74 248.3 0.7 3.9e-74 248.1 0.7 1.0 1 0 0 1 1 1 1 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C7 PF14522.6 ABA81593.1 - 1.2e-07 31.6 11.8 8.6e-06 25.7 0.8 2.8 2 1 0 2 2 2 2 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 ABA81593.1 - 5.5e-07 29.2 7.1 0.082 12.7 0.9 3.7 3 1 0 3 3 3 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.6 ABA81593.1 - 1.7e-06 28.4 10.7 0.0068 16.8 1.7 2.2 2 0 0 2 2 2 2 Cytochrome c3 Cytochrom_CIII PF02085.16 ABA81593.1 - 0.00022 21.5 9.7 0.059 13.7 0.9 2.4 2 0 0 2 2 2 2 Class III cytochrome C family C1_1 PF00130.22 ABA81593.1 - 0.089 12.7 4.1 1.1 9.2 0.3 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HE PF16278.5 ABA81593.1 - 0.48 10.9 3.7 42 4.7 0.3 3.1 2 1 1 3 3 3 0 C2HE / C2H2 / C2HC zinc-binding finger Defensin_5 PF18251.1 ABA81593.1 - 0.78 9.9 9.8 4.4 7.5 0.1 3.9 4 0 0 4 4 4 0 Fungal defensin Copsin DUF3795 PF12675.7 ABA81593.1 - 0.97 9.9 7.3 1.6 9.2 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3795) zf-C4pol PF14260.6 ABA81593.1 - 1.3 9.6 5.6 5.4 7.5 0.6 2.5 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-CHY PF05495.12 ABA81593.1 - 2.1 8.9 16.4 0.94 10.0 4.0 3.4 2 2 1 3 3 3 0 CHY zinc finger DNA_RNApol_7kD PF03604.13 ABA81593.1 - 2.3 8.0 0.0 2.3 8.0 0.0 2.9 4 0 0 4 4 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_15 PF17032.5 ABA81593.1 - 3.7 8.4 8.5 3.1 8.6 1.2 2.4 1 1 0 2 2 2 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 ABA81593.1 - 3.9 7.5 11.9 24 5.0 0.3 3.4 2 2 0 2 2 2 0 zinc-ribbons Cytochrome_C554 PF13435.6 ABA81593.1 - 4.8 8.2 14.3 39 5.2 2.3 3.6 2 2 0 2 2 2 0 Cytochrome c554 and c-prime DZR PF12773.7 ABA81593.1 - 9.7 6.3 12.4 8.9 6.4 2.5 3.2 2 2 1 3 3 3 0 Double zinc ribbon LPG_synthase_TM PF03706.13 ABA81594.1 - 0.00088 18.9 5.5 0.0011 18.6 5.5 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Oxidored_q3 PF00499.20 ABA81594.1 - 0.0013 18.4 0.2 0.0013 18.4 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3792 PF12670.7 ABA81594.1 - 0.023 14.8 2.7 0.028 14.6 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) DUF4131 PF13567.6 ABA81594.1 - 0.088 12.5 4.4 0.12 12.0 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4381 PF14316.6 ABA81594.1 - 1 9.6 5.3 0.2 11.9 2.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) RseC_MucC PF04246.12 ABA81594.1 - 1.4 8.9 3.4 2.2 8.2 3.4 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC YadA_anchor PF03895.15 ABA81595.2 - 1.1e-13 51.0 5.4 1.1e-13 51.0 5.4 4.5 4 2 0 4 4 4 1 YadA-like membrane anchor domain YadA_stalk PF05662.14 ABA81595.2 - 1.7e-06 28.3 0.5 1.7e-06 28.3 0.5 4.4 4 0 0 4 4 4 1 Coiled stalk of trimeric autotransporter adhesin DNA_primase_S PF01896.19 ABA81597.1 - 0.0001 22.4 0.0 0.0007 19.7 0.0 2.1 1 1 0 1 1 1 1 DNA primase small subunit NTP_transf_8 PF12281.8 ABA81598.1 - 8.4e-60 202.5 0.2 1.2e-59 202.0 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase AAA PF00004.29 ABA81600.1 - 1.7e-10 41.4 0.0 3e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 ABA81600.1 - 2.2e-06 27.7 0.0 6.2e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 ABA81600.1 - 0.00034 20.1 0.0 0.0029 17.0 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 ABA81600.1 - 0.00055 19.7 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 ABA81600.1 - 0.0016 18.7 0.0 0.011 16.0 0.0 2.4 3 1 1 4 4 4 1 AAA domain NACHT PF05729.12 ABA81600.1 - 0.0028 17.6 0.0 0.4 10.6 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 ABA81600.1 - 0.0089 16.3 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 ABA81600.1 - 0.012 15.8 0.2 0.045 13.9 0.1 2.0 2 0 0 2 2 1 0 AAA domain AAA_16 PF13191.6 ABA81600.1 - 0.018 15.4 0.4 0.13 12.7 0.0 2.4 1 1 1 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 ABA81600.1 - 0.041 13.4 2.4 0.15 11.6 0.1 2.6 2 1 1 3 3 3 0 AAA domain AAA_2 PF07724.14 ABA81600.1 - 0.14 12.3 0.0 1 9.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 ABA81600.1 - 0.15 12.6 0.0 0.31 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 ABA81600.1 - 0.18 11.8 0.0 0.52 10.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 ABA81600.1 - 0.19 11.4 0.0 0.99 9.1 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TniB PF05621.11 ABA81600.1 - 0.21 11.0 0.0 0.78 9.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein OMP_b-brl PF13505.6 ABA81601.1 - 1.2e-22 80.9 7.7 1.5e-22 80.6 7.7 1.1 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain Autotransporter PF03797.19 ABA81601.1 - 1.6e-07 31.2 14.3 3.2e-07 30.2 9.5 2.4 1 1 1 2 2 2 2 Autotransporter beta-domain OmpA_membrane PF01389.17 ABA81601.1 - 0.00088 19.1 1.1 0.0019 17.9 1.1 1.8 1 1 0 1 1 1 1 OmpA-like transmembrane domain DUF3575 PF12099.8 ABA81601.1 - 0.053 12.8 0.7 10 5.4 1.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3575) Response_reg PF00072.24 ABA81603.2 - 6.5e-20 71.4 0.0 1.1e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 ABA81603.2 - 3.4e-13 48.9 0.3 9.3e-13 47.5 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 ABA81603.2 - 0.018 14.6 0.0 0.044 13.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 ABA81605.1 - 3.1e-18 65.1 0.6 4.4e-18 64.6 0.6 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA81605.1 - 2.8e-06 26.9 0.1 5.9e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Response_reg PF00072.24 ABA81605.1 - 7.2e-06 26.1 0.0 1.6e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4 PF04545.16 ABA81605.1 - 0.0004 19.8 0.2 0.00077 18.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 ABA81605.1 - 0.0035 17.8 0.1 0.0067 16.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 ABA81605.1 - 0.0093 15.5 0.2 0.017 14.7 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 ABA81605.1 - 0.046 13.5 0.2 0.13 12.1 0.2 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 ABA81605.1 - 0.088 12.6 0.4 0.78 9.6 0.4 2.3 1 1 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.12 ABA81605.1 - 0.12 12.2 0.4 0.55 10.1 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain Autoind_bind PF03472.15 ABA81606.1 - 1.1e-07 31.4 0.0 2e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Autoinducer binding domain GerE PF00196.19 ABA81606.1 - 3e-06 26.7 0.0 5.2e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 ABA81606.1 - 5.4e-05 22.8 0.2 9.2e-05 22.0 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 ABA81606.1 - 6.6e-05 22.6 0.3 0.00016 21.4 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 ABA81606.1 - 0.00021 21.3 0.3 0.00051 20.1 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 ABA81606.1 - 0.0037 16.7 0.1 0.012 15.1 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.6 ABA81606.1 - 0.011 15.8 0.4 0.038 14.0 0.1 2.0 1 1 1 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.12 ABA81606.1 - 0.022 14.5 1.1 0.37 10.6 0.8 2.8 3 1 0 3 3 3 0 HTH DNA binding domain HTH_7 PF02796.15 ABA81606.1 - 0.095 12.8 0.1 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_AsnC-type PF13404.6 ABA81606.1 - 0.097 12.5 0.1 0.31 10.9 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 ABA81606.1 - 0.099 12.2 0.1 0.22 11.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Acetyltransf_17 PF17668.1 ABA81608.2 - 0.088 13.6 0.0 0.15 12.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain VirC1 PF07015.11 ABA81609.1 - 2e-18 66.6 0.1 2.3e-18 66.3 0.1 1.1 1 0 0 1 1 1 1 VirC1 protein AAA_31 PF13614.6 ABA81609.1 - 9.9e-16 58.2 0.0 4.7e-13 49.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 ABA81609.1 - 5.1e-12 46.0 0.0 8e-12 45.3 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA81609.1 - 1.3e-06 27.9 0.0 9.2e-06 25.1 0.0 2.1 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 ABA81609.1 - 1.7e-05 24.4 0.0 0.00012 21.7 0.0 2.1 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 ABA81609.1 - 4.4e-05 23.1 0.1 0.0001 21.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 ABA81609.1 - 0.00032 20.2 0.0 0.00053 19.5 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 ABA81609.1 - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 ABA81609.1 - 0.0015 18.2 0.0 0.003 17.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ArsA_ATPase PF02374.15 ABA81609.1 - 0.02 14.1 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase RNA_helicase PF00910.22 ABA81609.1 - 0.031 14.7 0.0 0.05 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TrwB_AAD_bind PF10412.9 ABA81609.1 - 0.038 12.9 0.0 0.073 12.0 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 ABA81609.1 - 0.047 13.4 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 ABA81609.1 - 0.07 13.5 0.1 0.13 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain SRAP PF02586.14 ABA81610.1 - 1.7e-30 106.2 0.0 2e-30 106.0 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) DUF4942 PF13708.6 ABA81613.1 - 4e-48 164.0 0.0 5.5e-48 163.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4942) ABC_membrane_3 PF13748.6 ABA81613.1 - 0.0042 16.4 0.0 0.007 15.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region MTS PF05175.14 ABA81613.1 - 0.014 14.9 0.0 0.035 13.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_23 PF13489.6 ABA81613.1 - 0.068 13.0 0.0 0.18 11.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF3768 PF12599.8 ABA81614.1 - 1.7e-26 92.0 0.0 2.2e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3768) PRiA4_ORF3 PF07929.11 ABA81615.1 - 9e-25 87.4 0.0 1.3e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein LysE PF01810.18 ABA81617.1 - 1.6e-30 106.1 17.0 1.9e-30 105.8 17.0 1.1 1 0 0 1 1 1 1 LysE type translocator CAAD PF14159.6 ABA81617.1 - 0.18 11.7 2.4 0.26 11.1 0.1 2.3 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase MadM PF03818.13 ABA81617.1 - 1.9 8.4 12.1 0.31 10.9 0.7 3.7 2 1 0 3 3 3 0 Malonate/sodium symporter MadM subunit DUF2332 PF10094.9 ABA81618.1 - 8.4e-100 334.5 0.7 9.5e-100 334.3 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) CSS-motif PF12792.7 ABA81618.1 - 0.037 13.5 0.1 0.067 12.7 0.1 1.4 1 0 0 1 1 1 0 CSS motif domain associated with EAL DUF478 PF04334.12 ABA81618.1 - 0.04 14.0 0.0 0.1 12.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF478) Radical_SAM PF04055.21 ABA81621.1 - 4e-08 33.8 0.0 7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Methyltransf_23 PF13489.6 ABA81622.2 - 5.2e-09 36.2 0.0 7.8e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 ABA81622.2 - 3.9e-07 30.6 0.0 6.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA81622.2 - 7.8e-07 29.7 0.0 1.9e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 ABA81622.2 - 0.018 14.4 0.0 0.2 11.0 0.0 2.1 1 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family HMGL-like PF00682.19 ABA81623.1 - 5.3e-63 213.0 2.3 6.3e-63 212.8 2.3 1.1 1 0 0 1 1 1 1 HMGL-like Lipase_GDSL_2 PF13472.6 ABA81623.1 - 0.1 13.0 0.0 0.24 11.8 0.0 1.7 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family GDPD_2 PF13653.6 ABA81623.1 - 0.13 12.7 0.0 17 6.1 0.0 3.0 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Cys_Met_Meta_PP PF01053.20 ABA81625.1 - 5.1e-95 318.2 0.0 6.4e-95 317.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 ABA81625.1 - 0.16 10.9 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Methyltransf_25 PF13649.6 ABA81626.1 - 0.00021 22.0 0.1 0.00048 20.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain DUF364 PF04016.12 ABA81626.1 - 0.0085 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation Methyltransf_11 PF08241.12 ABA81626.1 - 0.039 14.6 0.0 0.11 13.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 ABA81626.1 - 0.093 13.5 0.0 0.2 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Asn_synthase PF00733.21 ABA81627.1 - 4.8e-46 158.1 0.0 5.9e-46 157.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 ABA81627.1 - 7.2e-08 32.4 0.0 2.5e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 ABA81627.1 - 2.2e-06 27.9 0.1 0.0071 16.6 0.0 2.6 1 1 0 2 2 2 2 Glutamine amidotransferase domain ATP_bind_3 PF01171.20 ABA81627.1 - 0.12 12.1 0.2 0.2 11.4 0.2 1.3 1 0 0 1 1 1 0 PP-loop family DDE_Tnp_IS66 PF03050.14 ABA81628.1 - 4.3e-92 308.6 0.0 9.4e-92 307.5 0.0 1.5 2 0 0 2 2 2 1 Transposase IS66 family DDE_Tnp_IS66_C PF13817.6 ABA81628.1 - 2.5e-15 56.4 0.1 8.6e-15 54.7 0.0 2.0 2 0 0 2 2 2 1 IS66 C-terminal element zf-IS66 PF13005.7 ABA81628.1 - 5.7e-14 52.2 5.3 1.6e-13 50.8 5.3 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 LZ_Tnp_IS66 PF13007.7 ABA81628.1 - 5e-12 46.4 4.0 5e-12 46.4 4.0 2.2 2 0 0 2 2 2 1 Transposase C of IS166 homeodomain TnpB_IS66 PF05717.13 ABA81629.1 - 3.6e-37 126.3 0.0 4.1e-37 126.1 0.0 1.0 1 0 0 1 1 1 1 IS66 Orf2 like protein 2CSK_N PF08521.10 ABA81629.1 - 0.096 12.8 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Two-component sensor kinase N-terminal HTH_Tnp_1 PF01527.20 ABA81630.1 - 1.6e-17 63.6 0.0 2.4e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 ABA81630.1 - 2e-05 24.2 0.0 3.6e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 ABA81630.1 - 7.8e-05 22.7 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 ABA81630.1 - 0.0032 16.8 0.1 0.0057 16.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MerR PF00376.23 ABA81630.1 - 0.0061 16.3 0.4 0.079 12.7 0.0 2.8 2 1 0 2 2 2 1 MerR family regulatory protein HTH_29 PF13551.6 ABA81630.1 - 0.036 14.1 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix MerR_1 PF13411.6 ABA81630.1 - 0.085 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein BrkDBD PF09607.10 ABA81630.1 - 0.13 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Brinker DNA-binding domain Trp_oprn_chp PF09534.10 ABA81631.1 - 0.026 14.3 0.5 0.041 13.7 0.3 1.5 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HTH_Tnp_1 PF01527.20 ABA81633.1 - 6e-12 45.7 0.2 1e-11 45.0 0.2 1.4 1 0 0 1 1 1 1 Transposase RP-C_C PF11800.8 ABA81636.1 - 3.5e-59 200.4 0.2 3.5e-59 200.4 0.2 1.7 2 0 0 2 2 2 1 Replication protein C C-terminal region RP-C PF03428.13 ABA81636.1 - 1e-58 197.9 0.7 4.2e-58 195.8 0.5 2.0 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_20 PF12840.7 ABA81636.1 - 0.00039 20.4 0.9 0.0017 18.4 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA81636.1 - 0.001 18.9 0.0 0.0039 17.0 0.0 2.0 1 0 0 1 1 1 1 MarR family MarR PF01047.22 ABA81636.1 - 0.0034 17.3 0.0 0.0074 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 ABA81636.1 - 0.017 15.0 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DivIC PF04977.15 ABA81636.1 - 0.055 13.2 0.5 11 5.9 0.6 2.3 2 0 0 2 2 2 0 Septum formation initiator DUF745 PF05335.13 ABA81636.1 - 0.13 12.0 0.3 0.23 11.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) HisKA PF00512.25 ABA81636.1 - 4.4 7.4 6.1 31 4.7 0.6 2.6 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain ParBc PF02195.18 ABA81637.1 - 9.5e-15 54.7 0.6 1.7e-14 53.8 0.6 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain RepB PF07506.11 ABA81637.1 - 4.3e-10 40.0 0.0 1.2e-09 38.5 0.0 1.7 1 1 0 1 1 1 1 RepB plasmid partitioning protein HTH_23 PF13384.6 ABA81637.1 - 0.018 14.8 0.6 0.67 9.8 0.0 2.9 2 0 0 2 2 2 0 Homeodomain-like domain DUF294 PF03445.13 ABA81637.1 - 0.029 14.2 0.1 0.4 10.5 0.0 2.6 3 0 0 3 3 3 0 Putative nucleotidyltransferase DUF294 HTH_DeoR PF08220.12 ABA81637.1 - 0.11 12.3 0.1 0.3 10.9 0.0 1.7 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain P22_Cro PF14549.6 ABA81637.1 - 0.13 12.1 0.4 0.87 9.5 0.1 2.4 3 0 0 3 3 3 0 DNA-binding transcriptional regulator Cro AAA_31 PF13614.6 ABA81638.1 - 1.4e-39 135.9 0.0 2.2e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 ABA81638.1 - 2.5e-22 79.3 0.0 2e-21 76.4 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA81638.1 - 2.8e-11 43.2 0.2 1.5e-06 27.7 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 ABA81638.1 - 4e-10 39.6 0.0 8.5e-10 38.5 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 ABA81638.1 - 1.8e-08 33.9 0.2 7.3e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 Anion-transporting ATPase ParA PF10609.9 ABA81638.1 - 4.4e-07 29.6 0.5 0.00026 20.5 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MerR PF00376.23 ABA81638.1 - 7.8e-07 28.8 0.0 2.8e-06 27.0 0.0 2.0 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 ABA81638.1 - 1.3e-05 25.2 0.0 3.2e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein ATP_bind_1 PF03029.17 ABA81638.1 - 9.6e-05 22.3 0.0 0.078 12.7 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein Fer4_NifH PF00142.18 ABA81638.1 - 0.00085 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Glyco_trans_4_4 PF13579.6 ABA81638.1 - 0.0018 18.8 0.0 0.005 17.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain CLP1_P PF16575.5 ABA81638.1 - 0.0019 18.0 0.0 0.0036 17.1 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 ABA81638.1 - 0.0039 16.5 0.0 0.0086 15.4 0.0 1.6 1 0 0 1 1 1 1 VirC1 protein CcmH PF03918.14 ABA81638.1 - 0.0067 15.7 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein SRP54 PF00448.22 ABA81638.1 - 0.033 13.8 0.2 0.08 12.6 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 ABA81638.1 - 0.088 11.8 0.0 0.21 10.5 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB LpxK PF02606.14 ABA81638.1 - 0.091 11.8 0.1 0.24 10.4 0.0 1.6 1 1 1 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase Methyltransf_24 PF13578.6 ABA81638.1 - 0.098 13.7 0.0 0.57 11.2 0.0 2.3 2 1 0 2 2 1 0 Methyltransferase domain HTH_17 PF12728.7 ABA81638.1 - 0.14 12.4 0.0 0.46 10.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain MazE_antitoxin PF04014.18 ABA81639.1 - 2e-12 46.7 0.1 2.5e-12 46.4 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TOBE PF03459.17 ABA81639.1 - 0.029 14.6 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 TOBE domain PIN PF01850.21 ABA81640.1 - 1e-12 48.6 0.0 1.3e-12 48.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain Cytidylate_kin2 PF13189.6 ABA81640.1 - 0.063 13.4 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family Resolvase PF00239.21 ABA81641.1 - 4.1e-39 134.0 0.1 7.1e-39 133.2 0.1 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain Recombinase PF07508.13 ABA81641.1 - 0.022 15.2 0.0 0.051 14.0 0.0 1.6 2 0 0 2 2 2 0 Recombinase DUF4777 PF16007.5 ABA81641.1 - 0.17 12.1 0.0 1.9 8.8 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) Heme_oxygenase PF01126.20 ABA81642.1 - 4e-10 39.8 0.0 2.1e-09 37.5 0.0 1.8 1 1 0 1 1 1 1 Heme oxygenase Haem_oxygenas_2 PF14518.6 ABA81642.1 - 0.017 14.9 0.0 0.03 14.1 0.0 1.4 1 1 0 1 1 1 0 Iron-containing redox enzyme EAL PF00563.20 ABA81643.1 - 1.4e-63 214.6 0.2 2.4e-63 213.9 0.2 1.4 1 0 0 1 1 1 1 EAL domain PHY PF00360.20 ABA81643.1 - 1.5e-50 171.0 0.1 2.4e-50 170.4 0.1 1.3 1 0 0 1 1 1 1 Phytochrome region GGDEF PF00990.21 ABA81643.1 - 1.7e-41 141.6 0.0 3.2e-41 140.8 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_2 PF08446.11 ABA81643.1 - 5.3e-20 72.1 0.0 2.7e-19 69.8 0.0 2.2 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 ABA81643.1 - 3.2e-15 56.9 0.1 1.5e-14 54.7 0.1 2.1 1 0 0 1 1 1 1 GAF domain PTCRA PF15028.6 ABA81643.1 - 0.14 11.8 0.3 0.85 9.3 0.1 2.2 2 0 0 2 2 2 0 Pre-T-cell antigen receptor MetOD1 PF18546.1 ABA81644.1 - 0.00026 21.0 0.0 0.00035 20.6 0.0 1.1 1 0 0 1 1 1 1 Metanogen output domain 1 HisKA_2 PF07568.12 ABA81645.1 - 8.7e-15 54.6 0.5 2e-14 53.4 0.5 1.6 1 0 0 1 1 1 1 Histidine kinase HATPase_c_2 PF13581.6 ABA81645.1 - 3.5e-09 36.7 0.8 1.3e-08 34.8 0.0 2.3 3 1 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 ABA81645.1 - 2.9e-07 31.0 0.2 5.2e-06 26.9 0.2 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 ABA81645.1 - 2.8e-06 27.2 0.0 9.6e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.14 ABA81645.1 - 6.7e-06 26.7 0.5 1.5e-05 25.6 0.5 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS PF00989.25 ABA81645.1 - 1.3e-05 25.1 0.0 5.4e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 ABA81645.1 - 0.0018 18.5 0.0 0.018 15.3 0.0 2.3 3 0 0 3 3 3 1 PAS domain MLTR_LBD PF17765.1 ABA81645.1 - 0.0054 16.9 0.1 0.69 10.0 0.0 2.7 1 1 1 2 2 2 1 MmyB-like transcription regulator ligand binding domain PAS_4 PF08448.10 ABA81645.1 - 0.02 15.1 0.0 0.05 13.9 0.0 1.8 1 1 0 1 1 1 0 PAS fold Response_reg PF00072.24 ABA81646.1 - 1e-15 57.9 0.0 1.2e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Sulfate_transp PF00916.20 ABA81648.1 - 3.3e-54 184.1 26.0 2.9e-27 95.4 5.6 2.2 2 0 0 2 2 2 2 Sulfate permease family STAS PF01740.21 ABA81648.1 - 8.1e-10 38.4 0.0 1.5e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 ABA81648.1 - 0.00011 22.5 5.1 0.00011 22.5 5.1 3.8 4 0 0 4 4 4 1 Molybdate transporter of MFS superfamily STAS_2 PF13466.6 ABA81648.1 - 0.00023 21.4 0.2 0.00054 20.3 0.2 1.7 1 0 0 1 1 1 1 STAS domain 7TMR-DISM_7TM PF07695.11 ABA81648.1 - 2 8.3 26.6 0.063 13.2 9.5 2.6 2 2 0 2 2 2 0 7TM diverse intracellular signalling zf-dskA_traR PF01258.17 ABA81649.1 - 5.1e-09 35.9 1.7 1.6e-08 34.3 1.7 1.9 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger MFS_1 PF07690.16 ABA81650.1 - 5.3e-31 107.8 78.4 1.2e-29 103.4 56.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_20 PF12840.7 ABA81651.1 - 7.6e-15 54.7 0.8 1.3e-14 54.0 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 ABA81651.1 - 1.2e-13 50.7 0.5 6.6e-13 48.3 0.1 2.0 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 ABA81651.1 - 1.2e-06 28.6 0.0 2.6e-06 27.5 0.0 1.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 ABA81651.1 - 0.0008 19.2 0.3 0.002 18.0 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 ABA81651.1 - 0.0026 17.3 0.0 0.0053 16.3 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 ABA81651.1 - 0.0052 16.7 0.1 0.0098 15.8 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RP-C PF03428.13 ABA81651.1 - 0.01 15.5 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain MarR PF01047.22 ABA81651.1 - 0.016 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 ABA81651.1 - 0.074 13.6 0.1 0.13 12.7 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 ABA81651.1 - 0.22 11.4 4.9 0.45 10.3 2.5 2.4 2 1 0 2 2 2 0 IclR helix-turn-helix domain ArsP_1 PF03773.13 ABA81652.1 - 5.3e-68 229.3 21.9 6.5e-68 229.0 21.9 1.1 1 0 0 1 1 1 1 Predicted permease Thioredoxin_3 PF13192.6 ABA81653.1 - 6e-26 90.3 1.4 6.5e-26 90.2 1.4 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 ABA81653.1 - 0.0024 18.0 0.1 0.0043 17.2 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin ArsD PF06953.11 ABA81653.1 - 0.011 16.1 0.0 0.02 15.3 0.0 1.4 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Glycos_transf_1 PF00534.20 ABA81653.1 - 0.11 12.0 0.5 0.13 11.8 0.5 1.3 1 1 0 1 1 1 0 Glycosyl transferases group 1 SRP72 PF08492.12 ABA81654.1 - 0.15 12.5 0.1 0.25 11.8 0.1 1.3 1 0 0 1 1 1 0 SRP72 RNA-binding domain DUF2750 PF11042.8 ABA81654.1 - 0.16 12.1 0.0 0.21 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2750) Glyco_trans_1_4 PF13692.6 ABA81655.1 - 3.4e-14 53.4 0.0 6.1e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 ABA81655.1 - 1.8e-12 47.1 0.0 2.8e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 ABA81655.1 - 4.5e-10 39.8 1.2 9.7e-10 38.7 0.7 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 ABA81655.1 - 2.5e-07 31.0 0.2 5.5e-06 26.7 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Acyl_transf_3 PF01757.22 ABA81657.1 - 3.1e-27 95.5 22.5 1.9e-26 93.0 22.5 1.9 1 1 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.12 ABA81657.1 - 3.1e-05 23.6 5.8 7.7e-05 22.4 2.4 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1624) LMWPc PF01451.21 ABA81658.1 - 1.5e-16 61.1 0.0 2e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase HTH_20 PF12840.7 ABA81658.1 - 4.3e-12 45.9 3.2 5e-12 45.7 0.7 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.20 ABA81658.1 - 7.5e-06 25.7 0.3 2.8e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 ABA81658.1 - 0.00014 21.7 0.2 0.00035 20.4 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 ABA81658.1 - 0.0017 18.2 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 ABA81658.1 - 0.0076 16.7 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 ABA81658.1 - 0.011 15.3 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 ABA81658.1 - 0.012 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 ABA81658.1 - 0.022 14.5 0.6 0.063 13.1 0.4 2.0 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 ABA81658.1 - 0.023 14.5 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 ABA81658.1 - 0.041 14.2 0.0 0.077 13.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 ABA81658.1 - 0.16 11.7 0.0 0.37 10.6 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Gp_dh_C PF02800.20 ABA81659.1 - 7.8e-61 204.3 0.0 1.1e-60 203.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 ABA81659.1 - 1.9e-26 92.4 0.0 9.6e-26 90.1 0.0 2.0 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MFS_1 PF07690.16 ABA81660.1 - 2.4e-08 33.3 67.9 3e-06 26.4 38.5 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily RP-C_C PF11800.8 ABA81663.1 - 1.7e-24 87.1 0.0 4.1e-24 85.8 0.0 1.7 1 1 0 1 1 1 1 Replication protein C C-terminal region RP-C PF03428.13 ABA81663.1 - 1.1e-15 57.7 2.6 1.8e-15 57.1 2.6 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain MerR PF00376.23 ABA81663.1 - 0.0097 15.7 0.3 0.056 13.2 0.3 2.4 1 1 0 1 1 1 1 MerR family regulatory protein MarR_2 PF12802.7 ABA81663.1 - 0.014 15.2 1.1 0.057 13.3 1.1 2.1 1 0 0 1 1 1 0 MarR family Chloroplast_duf PF14476.6 ABA81663.1 - 0.24 10.3 0.8 1.5 7.7 0.1 2.0 2 0 0 2 2 2 0 Petal formation-expressed TrbC PF04956.13 ABA81664.1 - 2.1e-05 24.6 11.5 2.5e-05 24.4 11.5 1.1 1 0 0 1 1 1 1 TrbC/VIRB2 family DUF4337 PF14235.6 ABA81664.1 - 2.5 8.2 5.0 3.9 7.6 5.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) TraL PF07178.11 ABA81665.1 - 7.9e-25 87.1 0.1 8.7e-25 87.0 0.1 1.0 1 0 0 1 1 1 1 TraL protein TNFR_16_TM PF18422.1 ABA81665.1 - 0.15 12.0 0.5 0.28 11.2 0.5 1.4 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain TraE PF05309.11 ABA81666.1 - 9.3e-45 152.2 0.4 1e-44 152.1 0.4 1.0 1 0 0 1 1 1 1 TraE protein CFTR_R PF14396.6 ABA81666.1 - 0.052 13.1 0.1 0.081 12.5 0.1 1.3 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain Raco_middle PF17651.1 ABA81666.1 - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 RACo middle region TraK PF06586.11 ABA81667.1 - 5.1e-43 147.4 0.1 5.6e-42 144.0 0.1 1.9 1 1 0 1 1 1 1 TraK protein P34-Arc PF04045.14 ABA81667.1 - 0.14 11.8 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Arp2/3 complex, 34 kD subunit p34-Arc TrbI PF03743.14 ABA81668.1 - 4.8e-34 117.8 6.5 4.8e-34 117.8 6.5 1.8 3 0 0 3 3 3 1 Bacterial conjugation TrbI-like protein CheX PF13690.6 ABA81668.1 - 0.082 13.1 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX ADIP PF11559.8 ABA81668.1 - 0.11 12.6 1.4 0.15 12.1 1.4 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF3450 PF11932.8 ABA81668.1 - 0.11 11.8 3.3 0.2 11.0 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) FlxA PF14282.6 ABA81668.1 - 0.2 11.7 5.0 0.37 10.8 5.0 1.4 1 0 0 1 1 1 0 FlxA-like protein TMF_DNA_bd PF12329.8 ABA81668.1 - 0.46 10.5 2.3 0.85 9.7 2.3 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 ABA81668.1 - 2.5 8.8 5.4 6.6 7.4 0.5 2.3 1 1 1 2 2 2 0 SlyX TraV PF09676.10 ABA81669.1 - 2.5e-18 67.3 0.0 1e-16 62.1 0.0 2.0 1 1 0 1 1 1 1 Type IV conjugative transfer system lipoprotein (TraV) TraC_F_IV PF11130.8 ABA81670.1 - 4.9e-44 150.7 0.0 8.1e-44 150.0 0.0 1.4 1 0 0 1 1 1 1 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 ABA81670.1 - 1.7e-14 53.6 0.0 1.3e-13 50.7 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.17 ABA81670.1 - 0.00015 22.0 0.1 0.00031 20.9 0.1 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 ABA81670.1 - 0.0013 17.8 0.1 0.0066 15.4 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 ABA81670.1 - 0.0015 17.9 0.1 0.013 14.9 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.6 ABA81670.1 - 0.0023 17.7 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 ABA81670.1 - 0.035 14.6 0.0 0.073 13.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 ABA81670.1 - 0.039 13.7 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 ABA81670.1 - 0.054 13.6 0.0 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 ABA81670.1 - 0.064 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 ABA81670.1 - 0.079 13.3 0.1 0.079 13.3 0.1 2.1 2 1 0 2 2 1 0 AAA ATPase domain Pox_A32 PF04665.12 ABA81670.1 - 0.089 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein MobB PF03205.14 ABA81670.1 - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 ABA81670.1 - 0.14 11.9 0.0 0.52 10.1 0.0 2.0 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrbI_Ftype PF09677.10 ABA81672.1 - 3.1e-11 43.5 0.3 3.6e-11 43.3 0.3 1.1 1 0 0 1 1 1 1 Type-F conjugative transfer system protein (TrbI_Ftype) OmpH PF03938.14 ABA81672.1 - 0.049 14.0 0.4 0.075 13.4 0.4 1.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Peptidase_S26 PF10502.9 ABA81673.1 - 1.8e-25 89.3 0.0 2.2e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Signal peptidase, peptidase S26 Peptidase_S24 PF00717.23 ABA81673.1 - 0.066 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase S24-like TraW_N PF12477.8 ABA81674.1 - 1.1e-10 41.1 3.2 1.7e-10 40.5 3.2 1.3 1 0 0 1 1 1 1 Sex factor F TraW protein N terminal TraU PF06834.11 ABA81675.1 - 1.1e-107 359.8 1.3 1.3e-107 359.7 1.3 1.0 1 0 0 1 1 1 1 TraU protein TrbC_Ftype PF09673.10 ABA81676.1 - 2.5e-29 101.6 0.0 3.6e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein TraN PF06986.11 ABA81677.1 - 1.4e-77 260.7 29.1 6.2e-75 252.0 14.4 2.8 3 0 0 3 3 3 2 Type-1V conjugative transfer system mating pair stabilisation TraF PF13728.6 ABA81678.1 - 1.1e-09 38.5 0.0 1.3e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin PF00085.20 ABA81678.1 - 0.15 12.1 0.0 1 9.4 0.0 2.0 1 1 0 1 1 1 0 Thioredoxin DUF4148 PF13663.6 ABA81678.1 - 7.4 6.8 10.5 9 6.6 0.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4148) TraF PF13728.6 ABA81679.1 - 3.4e-65 220.0 0.1 3.9e-65 219.8 0.1 1.0 1 0 0 1 1 1 1 F plasmid transfer operon protein CBP_BcsQ PF06564.12 ABA81679.1 - 0.037 13.5 0.1 0.053 13.0 0.1 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Com_YlbF PF06133.11 ABA81679.1 - 0.11 13.1 0.9 0.19 12.3 0.9 1.4 1 0 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA DUF3391 PF11871.8 ABA81679.1 - 0.27 11.8 2.7 0.5 10.9 2.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) eIF3_subunit PF08597.10 ABA81679.1 - 0.89 9.4 6.1 1.3 8.9 6.1 1.2 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit DUF3464 PF11947.8 ABA81680.1 - 0.12 12.1 0.3 0.14 11.9 0.3 1.2 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 DUF378 PF04070.12 ABA81680.1 - 0.14 12.0 5.1 0.27 11.1 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF378) TraH PF06122.11 ABA81681.1 - 5.1e-108 361.6 0.0 6.6e-108 361.2 0.0 1.1 1 0 0 1 1 1 1 Conjugative relaxosome accessory transposon protein T7SS_ESX_EspC PF10824.8 ABA81681.1 - 0.041 14.4 1.0 8.6 6.9 0.1 3.6 4 0 0 4 4 4 0 Excreted virulence factor EspC, type VII ESX diderm DASH_Dad4 PF08650.10 ABA81681.1 - 0.1 12.5 1.3 8.7 6.4 0.1 2.5 2 0 0 2 2 2 0 DASH complex subunit Dad4 TraG_N PF07916.11 ABA81682.1 - 2.1e-99 333.5 30.3 2.1e-99 333.5 30.3 2.2 2 0 0 2 2 2 1 TraG-like protein, N-terminal region Hydrolase_2 PF07486.12 ABA81682.1 - 7.3e-15 55.7 0.0 2.5e-14 54.0 0.0 2.0 1 0 0 1 1 1 1 Cell Wall Hydrolase GSH-S_ATP PF02955.16 ABA81682.1 - 0.03 13.7 0.0 0.084 12.3 0.0 1.7 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Acetyltransf_1 PF00583.25 ABA81683.1 - 6.1e-07 29.7 0.0 8.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family HemolysinCabind PF00353.19 ABA81684.1 - 4.6e-114 371.6 410.5 1.7e-08 34.3 9.6 27.0 13 6 22 37 37 37 32 RTX calcium-binding nonapeptide repeat (4 copies) BrnT_toxin PF04365.13 ABA81685.2 - 2.5e-18 66.2 0.0 3e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system Peptidase_M78 PF06114.13 ABA81686.1 - 5e-20 71.7 0.0 1.7e-19 69.9 0.0 1.8 2 0 0 2 2 2 1 IrrE N-terminal-like domain Peptidase_M48 PF01435.18 ABA81686.1 - 2.6 7.7 6.0 26 4.5 0.0 2.1 1 1 1 2 2 2 0 Peptidase family M48 Sigma70_r2 PF04542.14 ABA81687.2 - 0.00022 20.9 0.1 0.00079 19.1 0.0 2.0 2 1 0 2 2 2 1 Sigma-70 region 2 CheR_N PF03705.15 ABA81687.2 - 0.1 12.3 0.3 0.27 11.0 0.3 1.7 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain SMODS PF18144.1 ABA81689.1 - 4.3e-08 33.5 0.0 8.7e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain SAVED PF18145.1 ABA81691.1 - 5.6e-43 147.0 0.1 1e-42 146.2 0.0 1.4 2 0 0 2 2 2 1 SMODS-associated and fused to various effectors sensor domain Kdo PF06293.14 ABA81692.2 - 0.079 12.3 0.0 0.08 12.3 0.0 1.0 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Thymopoietin PF08198.11 ABA81692.2 - 0.16 11.6 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Thymopoietin protein DUF2726 PF10881.8 ABA81693.1 - 5.1e-36 123.4 0.0 6.8e-36 123.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2726) ABC_tran PF00005.27 ABA81696.1 - 9.1e-15 55.4 0.0 6.7e-14 52.6 0.0 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA81696.1 - 0.00049 19.6 0.0 0.37 10.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA81696.1 - 0.00058 19.8 0.4 0.01 15.7 0.2 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 ABA81696.1 - 0.0057 16.6 0.1 0.0086 16.0 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 ABA81696.1 - 0.018 15.5 0.0 0.025 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 ABA81696.1 - 0.045 13.8 0.1 0.082 13.0 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 ABA81696.1 - 0.049 13.4 0.1 0.093 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ParBc PF02195.18 ABA81697.1 - 7.9e-07 29.3 0.0 1.6e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain DUF2316 PF10078.9 ABA81697.1 - 0.068 13.4 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) NUDIX PF00293.28 ABA81697.1 - 1.4 9.0 14.9 0.1 12.7 1.6 3.2 3 0 0 3 3 3 0 NUDIX domain AAA_31 PF13614.6 ABA81698.1 - 1.4e-31 109.7 0.0 2.1e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 ABA81698.1 - 4.2e-17 62.4 0.0 6.3e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 ABA81698.1 - 2.5e-13 49.9 0.0 2.8e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 ABA81698.1 - 3.3e-07 30.0 1.9 1.5e-06 27.9 0.1 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 ABA81698.1 - 2.2e-05 24.0 0.2 0.00033 20.2 0.1 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 ABA81698.1 - 3.9e-05 23.0 1.1 9.7e-05 21.7 0.1 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 ABA81698.1 - 0.019 14.3 0.6 0.14 11.4 0.1 2.1 2 0 0 2 2 2 0 VirC1 protein Fer4_NifH PF00142.18 ABA81698.1 - 0.067 12.6 0.0 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 ABA81698.1 - 0.078 12.7 0.0 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 ABA81698.1 - 0.082 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase SRP54 PF00448.22 ABA81698.1 - 0.11 12.1 0.0 0.59 9.7 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 ABA81698.1 - 0.17 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RPA PF10134.9 ABA81699.1 - 7e-96 320.1 0.1 8.3e-96 319.9 0.1 1.1 1 0 0 1 1 1 1 Replication initiator protein A Rep_3 PF01051.21 ABA81699.1 - 1.1e-05 25.3 0.0 1.6e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Initiator Replication protein RepA_C PF04796.12 ABA81699.1 - 0.031 14.3 0.1 0.048 13.7 0.1 1.2 1 0 0 1 1 1 0 Plasmid encoded RepA protein Glyco_tranf_2_3 PF13641.6 ABA81700.1 - 5e-10 39.6 0.0 7.4e-10 39.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 ABA81700.1 - 1e-09 38.5 0.0 1.9e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 dTDP_sugar_isom PF00908.17 ABA81701.1 - 2.2e-66 222.7 0.0 2.5e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase GDP_Man_Dehyd PF16363.5 ABA81702.1 - 1.7e-93 313.7 0.0 1.9e-93 313.5 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 ABA81702.1 - 6.6e-71 238.6 0.0 7.9e-71 238.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA81702.1 - 5.7e-19 68.3 0.0 2.3e-18 66.3 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 ABA81702.1 - 1.9e-12 46.8 0.0 3.3e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 ABA81702.1 - 1.1e-11 44.4 0.0 2.4e-11 43.3 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 ABA81702.1 - 4.8e-11 42.3 0.0 5.6e-08 32.3 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 ABA81702.1 - 1.6e-07 31.0 0.3 0.0021 17.5 0.1 2.6 2 1 0 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.6 ABA81702.1 - 0.00059 19.8 0.3 0.0015 18.5 0.3 1.7 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 ABA81702.1 - 0.0021 17.7 0.1 0.0034 17.0 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short_C2 PF13561.6 ABA81702.1 - 0.0023 17.6 0.1 0.27 10.8 0.1 2.2 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 ABA81702.1 - 0.024 14.9 0.1 0.045 14.0 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Nudix_hydro PF18290.1 ABA81702.1 - 0.033 14.2 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Nudix hydrolase domain RmlD_sub_bind PF04321.17 ABA81703.1 - 1.3e-101 339.5 0.0 1.4e-101 339.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 ABA81703.1 - 4.3e-16 59.1 0.0 7.2e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA81703.1 - 3.3e-10 39.9 0.0 4.7e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 ABA81703.1 - 3.1e-05 23.9 0.1 0.0002 21.3 0.0 1.9 1 1 1 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 ABA81703.1 - 3.5e-05 23.1 0.0 6.6e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 ABA81703.1 - 0.00019 20.7 0.0 0.00053 19.2 0.0 1.8 2 1 0 2 2 2 1 Male sterility protein Lipase_GDSL_2 PF13472.6 ABA81703.1 - 0.0045 17.4 0.7 0.0097 16.3 0.2 1.8 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family DeoC PF01791.9 ABA81703.1 - 0.022 14.4 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 DeoC/LacD family aldolase NTP_transferase PF00483.23 ABA81704.1 - 3.1e-65 220.2 0.0 3.9e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 ABA81704.1 - 4.2e-08 33.7 0.0 5.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Sulfotransfer_3 PF13469.6 ABA81705.1 - 9.9e-15 55.5 1.0 4.7e-07 30.4 0.3 2.1 1 1 1 2 2 2 2 Sulfotransferase family Sulfotransfer_1 PF00685.27 ABA81705.1 - 1.7e-10 40.8 0.0 1.3e-09 37.9 0.0 1.9 1 1 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 ABA81706.1 - 2.9e-13 50.7 0.0 3.3e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Sulfotransferase family Sulfotransfer_1 PF00685.27 ABA81706.1 - 0.0014 18.1 0.0 0.0037 16.8 0.0 1.6 2 1 0 2 2 2 1 Sulfotransferase domain DAHP_synth_1 PF00793.20 ABA81707.1 - 6.8e-66 221.9 0.0 8.3e-66 221.7 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family Methyltransf_11 PF08241.12 ABA81708.1 - 1.3e-10 41.8 0.0 4.2e-10 40.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 ABA81708.1 - 7.7e-08 32.9 0.4 7.8e-07 29.7 0.0 2.4 2 1 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 ABA81708.1 - 0.00053 19.9 0.0 0.0011 18.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 ABA81708.1 - 0.0012 19.6 0.0 0.0038 18.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 ABA81708.1 - 0.045 12.3 0.0 2.1 6.8 0.0 2.0 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HlyD_3 PF13437.6 ABA81709.1 - 4.8e-12 46.5 0.0 4.1e-08 33.9 0.0 2.4 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 ABA81709.1 - 2e-07 30.5 0.0 4.8e-05 22.7 0.0 2.3 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 ABA81709.1 - 2.8e-07 30.2 0.2 8.4e-07 28.7 0.2 1.8 1 0 0 1 1 1 1 Biotin-lipoyl like HlyD PF00529.20 ABA81709.1 - 0.41 10.6 10.2 0.93 9.4 10.2 1.8 1 1 0 1 1 1 0 HlyD membrane-fusion protein of T1SS GvpL_GvpF PF06386.11 ABA81709.1 - 8.9 6.2 15.4 4.3 7.2 12.3 1.8 1 1 1 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF ABC_membrane PF00664.23 ABA81710.1 - 1.5e-35 123.2 6.3 2.1e-35 122.7 6.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 ABA81710.1 - 8.8e-35 120.2 0.0 1.4e-34 119.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 ABA81710.1 - 0.0002 20.9 0.1 0.019 14.4 0.0 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA81710.1 - 0.00064 19.6 0.9 0.25 11.1 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 ABA81710.1 - 0.0019 18.5 0.2 0.022 15.0 0.2 2.4 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 ABA81710.1 - 0.0038 16.1 0.2 0.097 11.4 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 ABA81710.1 - 0.0057 17.0 0.3 0.017 15.5 0.3 1.8 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 ABA81710.1 - 0.058 12.6 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 ABA81710.1 - 0.063 13.0 0.1 0.17 11.6 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_membrane_3 PF13748.6 ABA81710.1 - 0.085 12.1 9.0 0.33 10.2 9.0 1.8 1 1 0 1 1 1 0 ABC transporter transmembrane region PRK PF00485.18 ABA81710.1 - 0.093 12.5 0.4 0.15 11.8 0.4 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 ABA81710.1 - 0.12 12.2 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.6 ABA81710.1 - 0.15 12.3 0.1 0.91 9.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 ABA81710.1 - 0.18 11.9 0.1 0.31 11.1 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain DLIC PF05783.11 ABA81710.1 - 0.24 10.2 0.0 0.34 9.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NACHT PF05729.12 ABA81710.1 - 0.63 9.9 2.2 3.4 7.5 0.4 2.5 1 1 1 2 2 2 0 NACHT domain Glyco_transf_41 PF13844.6 ABA81711.1 - 2e-59 201.3 0.0 2.5e-29 102.0 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 41 TPR_19 PF14559.6 ABA81711.1 - 2.9e-08 34.1 18.6 0.00071 20.0 5.6 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 ABA81711.1 - 8.4e-08 32.7 24.5 3.9e-06 27.4 5.1 6.1 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 ABA81711.1 - 9e-07 28.5 14.4 0.011 15.8 0.4 4.1 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 ABA81711.1 - 1e-05 26.0 43.9 0.002 18.8 2.0 6.4 5 1 2 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.6 ABA81711.1 - 7.5e-05 22.5 4.9 3.1 8.0 0.1 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 ABA81711.1 - 0.0076 16.5 14.2 0.54 10.6 6.5 3.4 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 ABA81711.1 - 0.011 15.5 5.2 0.46 10.4 0.0 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 ABA81711.1 - 0.011 16.0 2.7 0.032 14.6 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 ABA81711.1 - 0.025 14.8 2.8 6.3 7.3 0.0 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 ABA81711.1 - 0.051 13.3 1.8 1.5 8.6 0.0 3.2 3 0 0 3 3 3 0 TPR repeat TPR_9 PF13371.6 ABA81711.1 - 0.13 12.4 22.8 0.081 13.1 6.7 3.6 2 1 1 3 3 3 0 Tetratricopeptide repeat HTH_26 PF13443.6 ABA81712.1 - 7e-07 29.6 71.4 9.2 6.8 0.1 26.2 15 10 15 31 31 31 4 Cro/C1-type HTH DNA-binding domain Poly_export PF02563.16 ABA81712.1 - 0.00012 22.2 72.3 2.2 8.6 0.3 19.1 12 8 6 19 19 19 6 Polysaccharide biosynthesis/export protein Sigma70_r4_2 PF08281.12 ABA81712.1 - 0.12 12.1 8.4 3.3 7.5 0.0 8.3 10 0 0 10 10 10 0 Sigma-70, region 4 DUF5440 PF17509.2 ABA81712.1 - 0.67 9.6 3.0 23 4.7 0.1 5.2 4 0 0 4 4 4 0 Family of unknown function (DUF5440) Phage_TAC_7 PF10109.9 ABA81712.1 - 1.5 9.0 104.6 10 6.3 0.3 25.1 3 3 16 20 20 20 0 Phage tail assembly chaperone proteins, E, or 41 or 14 Calx-beta PF03160.14 ABA81713.1 - 3.1e-77 255.1 7.2 7.6e-13 48.5 0.0 6.6 7 0 0 7 7 7 6 Calx-beta domain HemolysinCabind PF00353.19 ABA81713.1 - 5.5e-29 99.8 77.5 6.8e-09 35.5 15.0 5.6 3 1 0 4 4 4 4 RTX calcium-binding nonapeptide repeat (4 copies) BACON PF13004.7 ABA81713.1 - 0.0065 16.4 14.2 0.56 10.2 0.8 5.1 5 0 0 5 5 5 2 Putative binding domain, N-terminal DUF3925 PF13063.6 ABA81713.1 - 0.0079 16.4 0.6 16 5.8 0.0 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF3925) Fur_reg_FbpA PF13076.6 ABA81713.1 - 0.019 14.6 0.1 9 6.1 0.0 2.4 2 0 0 2 2 2 0 Fur-regulated basic protein A Cadherin_5 PF17892.1 ABA81713.1 - 0.033 14.2 4.6 2 8.4 0.4 2.9 2 0 0 2 2 2 0 Cadherin-like domain SpoVAD PF07451.11 ABA81713.1 - 0.14 10.8 9.4 0.96 8.1 1.4 2.2 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) Peptidase_M10_C PF08548.11 ABA81713.1 - 0.17 11.8 0.0 0.17 11.8 0.0 2.7 3 0 0 3 3 3 0 Peptidase M10 serralysin C terminal CIDE-N PF02017.15 ABA81713.1 - 0.31 11.1 0.7 1e+02 3.0 0.0 3.8 3 0 0 3 3 3 0 CIDE-N domain DUF4774 PF15999.5 ABA81713.1 - 7.8 6.4 8.5 72 3.3 0.2 4.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4774) UPF0126 PF03458.13 ABA81714.1 - 7.9e-46 153.8 22.6 3e-24 84.7 6.8 2.2 2 0 0 2 2 2 2 UPF0126 domain DUF1275 PF06912.11 ABA81714.1 - 1.1 9.2 17.8 0.096 12.6 7.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1275) HTH_AsnC-type PF13404.6 ABA81715.1 - 5.4e-19 67.8 2.6 1.1e-18 66.8 2.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 ABA81715.1 - 1.1e-18 66.5 0.3 1.5e-18 66.1 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 ABA81715.1 - 1.8e-18 66.3 0.0 2.7e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 ABA81715.1 - 0.00024 21.1 0.3 0.00053 20.0 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 ABA81715.1 - 0.0022 17.9 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_1 PF00126.27 ABA81715.1 - 0.0028 17.6 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 ABA81715.1 - 0.0061 16.5 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 ABA81715.1 - 0.019 14.9 0.2 0.031 14.2 0.2 1.3 1 0 0 1 1 1 0 MarR family HTH_CodY PF08222.11 ABA81715.1 - 0.027 14.0 0.0 0.069 12.7 0.0 1.7 1 1 1 2 2 2 0 CodY helix-turn-helix domain HTH_27 PF13463.6 ABA81715.1 - 0.03 14.8 0.1 0.056 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 ABA81715.1 - 0.068 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF5594 PF18057.1 ABA81715.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5594) HTH_31 PF13560.6 ABA81715.1 - 0.31 11.4 3.7 1.2 9.6 3.7 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.27 ABA81716.1 - 6.5e-34 117.4 0.0 8.7e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81716.1 - 7.5e-09 35.8 1.0 0.00085 19.2 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81716.1 - 5.8e-05 22.6 0.0 0.0049 16.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA81716.1 - 0.0032 17.8 0.6 0.078 13.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 ABA81716.1 - 0.0039 17.4 0.2 0.035 14.3 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 ABA81716.1 - 0.0072 16.9 0.0 0.021 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 ABA81716.1 - 0.0081 15.8 3.0 0.22 11.1 3.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 ABA81716.1 - 0.0087 15.8 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 ABA81716.1 - 0.014 15.8 1.5 0.021 15.2 1.5 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 ABA81716.1 - 0.015 15.0 0.0 0.06 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 ABA81716.1 - 0.019 13.9 0.0 0.027 13.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_ATPase PF09818.9 ABA81716.1 - 0.021 13.7 1.7 1.5 7.6 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.6 ABA81716.1 - 0.023 14.9 0.1 0.056 13.7 0.1 1.7 2 0 0 2 2 1 0 AAA domain TniB PF05621.11 ABA81716.1 - 0.025 14.0 0.0 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA PF00004.29 ABA81716.1 - 0.045 14.2 0.1 1.5 9.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 ABA81716.1 - 0.05 12.9 0.2 2.9 7.2 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.6 ABA81716.1 - 0.055 13.6 0.6 0.14 12.3 0.6 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 ABA81716.1 - 0.059 13.3 0.2 0.16 11.9 0.2 1.7 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 ABA81716.1 - 0.063 13.8 0.2 0.1 13.1 0.2 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA81716.1 - 0.091 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase BPD_transp_1 PF00528.22 ABA81717.1 - 8.6e-12 45.2 18.7 8.6e-12 45.2 18.7 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2273 PF10031.9 ABA81717.1 - 0.0083 16.1 0.8 0.0083 16.1 0.8 3.6 4 0 0 4 4 4 1 Small integral membrane protein (DUF2273) BPD_transp_1 PF00528.22 ABA81718.1 - 5.2e-21 75.2 14.5 5.2e-21 75.2 14.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 ABA81719.1 - 1.2e-39 136.4 1.3 1.4e-39 136.2 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA81719.1 - 1.3e-07 31.8 1.0 2.3e-07 31.1 1.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 ABA81719.1 - 4.5e-05 23.3 0.0 0.00067 19.4 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 ABA81719.1 - 0.0048 16.0 0.0 0.0092 15.1 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.6 ABA81719.1 - 0.03 13.8 0.1 0.076 12.4 0.1 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein LEA_6 PF10714.9 ABA81719.1 - 0.16 12.0 0.2 0.93 9.6 0.0 2.2 2 0 0 2 2 2 0 Late embryogenesis abundant protein 18 LysR_substrate PF03466.20 ABA81720.1 - 4.3e-17 62.2 12.4 7e-17 61.5 12.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81720.1 - 3.2e-16 59.0 0.9 3.2e-16 59.0 0.9 2.5 4 0 0 4 4 4 1 Bacterial regulatory helix-turn-helix protein, lysR family P22_Cro PF14549.6 ABA81720.1 - 0.0018 18.1 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_20 PF12840.7 ABA81720.1 - 0.0024 17.9 0.1 0.013 15.5 0.1 2.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 ABA81720.1 - 0.0082 16.0 1.5 0.017 15.0 0.2 2.3 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.6 ABA81720.1 - 0.01 15.6 0.0 0.031 14.1 0.0 1.9 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.6 ABA81720.1 - 0.011 15.5 1.2 0.052 13.4 0.1 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 ABA81720.1 - 0.018 15.1 0.1 0.044 13.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 ABA81720.1 - 0.034 13.7 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FMN_bind_2 PF04299.12 ABA81721.1 - 2e-52 177.3 0.0 2.3e-52 177.1 0.0 1.0 1 0 0 1 1 1 1 Putative FMN-binding domain Rrf2 PF02082.20 ABA81722.1 - 2.1e-21 76.1 0.1 3.1e-21 75.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator CMD PF02627.20 ABA81724.1 - 1.7e-15 56.8 0.2 2.5e-15 56.3 0.2 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family ExoD PF06055.12 ABA81725.1 - 5.9e-45 152.8 11.6 6.7e-45 152.7 11.6 1.0 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD ABC_tran PF00005.27 ABA81726.1 - 3.3e-27 95.7 0.0 4.8e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 ABA81726.1 - 2.1e-18 66.3 0.4 8.5e-16 58.0 0.3 2.5 2 0 0 2 2 2 1 TOBE domain AAA_29 PF13555.6 ABA81726.1 - 1.5e-05 24.6 0.0 3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 ABA81726.1 - 9e-05 22.0 0.0 0.19 11.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 ABA81726.1 - 0.00028 21.3 0.2 0.00057 20.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 ABA81726.1 - 0.00088 19.8 0.0 0.0012 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 ABA81726.1 - 0.01 16.1 0.1 0.026 14.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 ABA81726.1 - 0.011 15.6 0.3 1.1 9.0 0.0 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 ABA81726.1 - 0.014 15.1 0.1 0.031 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 ABA81726.1 - 0.027 14.4 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 ABA81726.1 - 0.044 14.0 0.2 1.2 9.4 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3987 PF13148.6 ABA81726.1 - 0.076 12.0 0.1 0.13 11.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MukB PF04310.12 ABA81726.1 - 0.091 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_33 PF13671.6 ABA81726.1 - 0.12 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 ABA81726.1 - 0.2 12.1 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SBP_bac_11 PF13531.6 ABA81727.1 - 2.5e-40 138.6 10.2 3e-40 138.4 10.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 ABA81727.1 - 6.2e-10 39.5 4.0 1.9e-05 24.8 0.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Chorion_1 PF01723.16 ABA81727.1 - 0.11 12.5 2.0 0.095 12.7 0.7 1.6 2 0 0 2 2 2 0 Chorion protein ESX-1_EspG PF14011.6 ABA81727.1 - 1.1 8.8 15.0 1 8.9 5.0 2.8 2 1 1 3 3 3 0 EspG family TOBE PF03459.17 ABA81728.1 - 1.6e-16 60.4 1.1 1.7e-16 60.3 1.1 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 ABA81728.1 - 0.052 13.7 0.1 0.058 13.6 0.1 1.1 1 0 0 1 1 1 0 TOBE domain TOBE_3 PF12857.7 ABA81728.1 - 0.11 12.4 0.0 0.15 12.0 0.0 1.3 1 1 0 1 1 1 0 TOBE-like domain QRPTase_C PF01729.19 ABA81729.1 - 3.1e-31 108.4 0.0 3.8e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 ABA81729.1 - 3.1e-21 75.2 0.0 6.3e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Lipase_GDSL_2 PF13472.6 ABA81729.1 - 0.097 13.1 0.1 1.1 9.6 0.1 2.6 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Ribul_P_3_epim PF00834.19 ABA81729.1 - 0.18 11.2 0.1 0.31 10.4 0.1 1.4 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 ABA81729.1 - 0.18 11.1 2.5 2.3 7.5 2.5 2.2 1 1 0 1 1 1 0 Thiamine monophosphate synthase TOBE PF03459.17 ABA81730.1 - 3.9e-36 123.2 6.6 6.2e-18 64.9 0.1 2.7 3 0 0 3 3 3 2 TOBE domain HTH_1 PF00126.27 ABA81730.1 - 2.5e-15 56.2 1.1 5.8e-15 55.0 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_3 PF12857.7 ABA81730.1 - 0.02 14.8 0.1 2.6 8.0 0.0 2.6 2 0 0 2 2 2 0 TOBE-like domain HTH_Tnp_ISL3 PF13542.6 ABA81730.1 - 0.021 14.2 0.2 0.056 12.9 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.19 ABA81730.1 - 0.041 13.7 0.5 0.091 12.6 0.5 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF4232 PF14016.6 ABA81730.1 - 0.38 10.9 3.0 0.74 10.0 0.4 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF4232) TauE PF01925.19 ABA81731.1 - 4.1e-31 108.4 49.2 5.1e-31 108.1 49.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Glyco_hydro_16 PF00722.21 ABA81732.1 - 2.9e-06 26.9 0.0 4.7e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 Flagellin_N PF00669.20 ABA81733.1 - 9.8e-19 67.8 10.7 9.8e-19 67.8 10.7 2.5 2 1 0 2 2 2 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 ABA81733.1 - 1.1e-14 54.5 4.9 1.1e-14 54.5 4.9 2.1 2 0 0 2 2 2 1 Bacterial flagellin C-terminal helical region COMMD1_N PF17221.3 ABA81733.1 - 0.25 11.7 2.7 3.9 7.8 0.1 2.4 2 0 0 2 2 2 0 COMMD1 N-terminal domain FlaF PF07309.11 ABA81734.1 - 1.7e-31 108.6 0.2 1.9e-31 108.4 0.2 1.0 1 0 0 1 1 1 1 Flagellar protein FlaF FlbT PF07378.11 ABA81735.1 - 2.9e-39 134.0 0.0 3.2e-39 133.8 0.0 1.0 1 0 0 1 1 1 1 Flagellar protein FlbT PhoH PF02562.16 ABA81735.1 - 0.02 14.3 0.0 0.071 12.6 0.0 1.8 1 1 1 2 2 2 0 PhoH-like protein DUF1217 PF06748.12 ABA81736.1 - 3.1e-39 134.4 0.5 1.6e-35 122.3 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1217) ABC_tran PF00005.27 ABA81737.1 - 3.4e-30 105.4 0.0 4.6e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 ABA81737.1 - 9.3e-20 70.9 0.2 1.5e-19 70.3 0.2 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 ABA81737.1 - 3.2e-05 24.2 1.6 0.0008 19.7 1.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA81737.1 - 0.00015 22.1 1.2 0.0004 20.8 1.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 ABA81737.1 - 0.0024 18.3 0.0 0.04 14.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 ABA81737.1 - 0.0067 15.9 0.2 0.06 12.8 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 ABA81737.1 - 0.058 13.2 0.1 5.7 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system PRK PF00485.18 ABA81737.1 - 0.072 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 ABA81737.1 - 0.11 11.6 0.1 0.18 10.9 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.14 ABA81737.1 - 0.12 12.2 0.2 0.21 11.5 0.2 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 ABA81737.1 - 0.15 11.4 0.0 3.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 ABA81738.1 - 6.1e-27 94.8 0.0 8.3e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 ABA81738.1 - 1.8e-17 63.6 0.2 3.3e-17 62.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 ABA81738.1 - 1.4e-05 25.1 0.2 0.00012 22.0 0.0 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81738.1 - 0.00024 20.6 0.0 0.00048 19.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 ABA81738.1 - 0.00036 20.8 0.1 0.0026 18.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA81738.1 - 0.011 16.1 0.7 0.023 15.1 0.7 1.5 1 1 0 1 1 1 0 AAA ATPase domain TniB PF05621.11 ABA81738.1 - 0.015 14.7 0.1 0.048 13.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 ABA81738.1 - 0.12 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 ABA81738.1 - 0.16 11.5 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF1876 PF08962.11 ABA81738.1 - 0.45 10.5 2.0 2.8 8.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1876) MR_MLE_C PF13378.6 ABA81739.1 - 3.6e-43 147.7 5.1 6.1e-43 146.9 5.1 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 ABA81739.1 - 5e-07 29.9 0.5 4e-06 27.0 0.2 2.3 2 1 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Arm-DNA-bind_3 PF13356.6 ABA81739.1 - 0.067 13.6 0.1 13 6.3 0.1 2.9 2 0 0 2 2 2 0 Arm DNA-binding domain DUF1485 PF07364.12 ABA81740.1 - 1.3e-78 264.2 0.5 1.7e-78 263.9 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M81 MlrC_C PF07171.12 ABA81740.1 - 1.1e-43 149.5 0.1 1.9e-43 148.7 0.1 1.3 1 0 0 1 1 1 1 MlrC C-terminus AstE_AspA PF04952.14 ABA81741.1 - 5.1e-55 186.6 0.0 6.1e-55 186.4 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family MR_MLE_C PF13378.6 ABA81742.1 - 8.2e-54 182.5 0.6 1.3e-53 181.8 0.6 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 ABA81742.1 - 7.4e-12 45.5 0.2 7.4e-12 45.5 0.2 1.6 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 ABA81743.1 - 1.8e-55 188.0 7.0 2.2e-55 187.8 7.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81743.1 - 8e-55 185.3 4.4 1e-54 185.0 4.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 ABA81743.1 - 4e-08 33.4 1.5 6.9e-08 32.6 1.5 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 ABA81743.1 - 1.3e-05 24.8 0.3 3.4e-05 23.4 0.3 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 ABA81743.1 - 7.8e-05 22.6 1.8 7.8e-05 22.6 1.8 1.8 1 1 1 2 2 2 1 NAD(P)H-binding F420_oxidored PF03807.17 ABA81743.1 - 0.00017 22.1 2.4 0.023 15.3 0.4 2.2 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 ABA81743.1 - 0.0087 15.4 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 ABA81743.1 - 0.032 13.6 0.6 1.3 8.4 0.0 2.8 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ApbA PF02558.16 ABA81743.1 - 0.043 13.5 0.2 0.092 12.4 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 ABA81744.1 - 3.7e-56 190.3 2.0 4.3e-56 190.1 2.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 ABA81744.1 - 5.2e-45 153.3 0.3 7.2e-45 152.8 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 ABA81744.1 - 8.3e-07 28.7 0.0 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 ABA81744.1 - 0.00022 20.5 0.3 0.00033 19.9 0.3 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 ABA81744.1 - 0.00042 20.3 1.2 0.0015 18.5 1.2 1.8 1 1 0 1 1 1 1 KR domain 2-Hacid_dh_C PF02826.19 ABA81744.1 - 0.059 12.7 0.0 0.089 12.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 ABA81744.1 - 0.066 13.5 0.0 0.15 12.3 0.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain BPD_transp_1 PF00528.22 ABA81745.1 - 2.8e-26 92.4 15.9 2.8e-26 92.4 15.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 ABA81745.1 - 1.6e-10 40.8 2.5 1.6e-10 40.8 2.5 4.1 4 1 1 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C YqzM PF14141.6 ABA81745.1 - 0.32 11.1 1.7 0.8 9.8 1.7 1.7 1 0 0 1 1 1 0 YqzM-like protein BPD_transp_1 PF00528.22 ABA81746.1 - 2.1e-41 141.7 13.2 2.1e-41 141.7 13.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component GNVR PF13807.6 ABA81746.1 - 8 6.5 6.4 7 6.7 0.2 2.5 2 0 0 2 2 2 0 G-rich domain on putative tyrosine kinase SBP_bac_5 PF00496.22 ABA81747.1 - 3e-76 256.9 0.0 3.9e-76 256.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle FCD PF07729.12 ABA81748.1 - 1.7e-21 77.0 1.5 1.9e-21 76.8 0.6 1.5 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 ABA81748.1 - 9e-14 50.9 2.4 7.4e-13 47.9 0.6 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 ABA81748.1 - 0.0013 18.9 0.0 0.0057 16.8 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 ABA81748.1 - 0.0051 16.8 0.1 0.012 15.6 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2120 PF09893.9 ABA81748.1 - 0.014 15.5 0.0 0.072 13.2 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) HTH_24 PF13412.6 ABA81748.1 - 0.022 14.3 0.1 0.056 13.0 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 ABA81748.1 - 0.033 14.1 0.2 0.11 12.5 0.1 1.9 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 ABA81748.1 - 0.037 13.9 0.2 0.1 12.5 0.2 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.11 ABA81748.1 - 0.1 12.2 0.3 0.29 10.7 0.3 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF3168 PF11367.8 ABA81748.1 - 0.24 11.6 2.8 0.35 11.1 0.4 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3168) DUF2939 PF11159.8 ABA81748.1 - 0.98 9.9 3.6 9.4 6.7 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2939) Ring_hydroxyl_A PF00848.19 ABA81749.1 - 4.8e-13 49.6 0.0 6.2e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) BrnT_toxin PF04365.13 ABA81750.1 - 1.6e-18 66.8 0.0 2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system Mrr_cat PF04471.12 ABA81751.1 - 9.1e-22 77.2 0.0 6.1e-21 74.6 0.0 2.0 2 0 0 2 2 2 1 Restriction endonuclease Mrr_cat_2 PF13156.6 ABA81751.1 - 8.2e-05 22.5 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF2726 PF10881.8 ABA81754.1 - 4.1e-36 123.7 0.0 5.6e-36 123.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2726) DSBA PF01323.20 ABA81756.1 - 1.1e-20 74.2 0.1 1.9e-19 70.2 0.1 2.2 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 ABA81756.1 - 3e-13 50.3 0.0 7e-13 49.1 0.0 1.5 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 ABA81756.1 - 1.1e-08 35.5 0.0 2.4e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain ScsC_N PF18312.1 ABA81756.1 - 0.00025 20.8 0.2 0.00054 19.7 0.2 1.5 1 0 0 1 1 1 1 Copper resistance protein ScsC N-terminal domain Thioredoxin PF00085.20 ABA81756.1 - 0.0027 17.6 0.0 0.26 11.3 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin DUF2946 PF11162.8 ABA81756.1 - 0.0086 16.7 0.8 0.031 15.0 0.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2946) ParBc PF02195.18 ABA81756.1 - 0.018 15.3 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 ParB-like nuclease domain TrwB_AAD_bind PF10412.9 ABA81757.1 - 8.3e-141 469.4 0.0 1.2e-140 468.8 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 ABA81757.1 - 2.3e-26 92.3 0.0 9.2e-26 90.3 0.0 2.0 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 ABA81757.1 - 1.1e-20 73.9 0.0 3e-17 62.6 0.0 2.1 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer DUF87 PF01935.17 ABA81757.1 - 0.017 15.2 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain TrwC PF08751.11 ABA81758.1 - 1.8e-81 273.9 4.3 4.4e-81 272.6 4.3 1.7 1 0 0 1 1 1 1 TrwC relaxase AAA_30 PF13604.6 ABA81758.1 - 1.5e-44 152.0 5.1 4.3e-44 150.5 5.1 1.8 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 ABA81758.1 - 3.4e-11 43.3 0.1 1.9e-05 24.6 0.0 3.4 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 ABA81758.1 - 1.4e-10 41.7 0.5 5e-10 39.9 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 ABA81758.1 - 1.5e-07 31.5 0.5 0.0046 16.8 0.0 3.5 3 1 1 4 4 4 2 AAA domain AAA_16 PF13191.6 ABA81758.1 - 5e-06 27.0 3.8 5.5e-06 26.9 0.3 2.7 2 1 0 2 2 2 1 AAA ATPase domain UvrD_C_2 PF13538.6 ABA81758.1 - 0.0002 21.1 0.1 0.00068 19.4 0.1 2.0 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PIF1 PF05970.14 ABA81758.1 - 0.001 18.3 0.5 0.021 14.0 0.5 2.2 1 1 0 1 1 1 1 PIF1-like helicase PhoH PF02562.16 ABA81758.1 - 0.0012 18.3 2.1 0.12 11.9 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA PF00004.29 ABA81758.1 - 0.0088 16.5 0.0 0.032 14.7 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Y2_Tnp PF04986.13 ABA81758.1 - 0.01 15.9 0.1 0.15 12.1 0.0 2.8 3 0 0 3 3 3 0 Putative transposase DUF2383 PF09537.10 ABA81758.1 - 0.026 14.9 0.0 0.15 12.4 0.0 2.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) Helicase_RecD PF05127.14 ABA81758.1 - 0.043 13.7 0.8 0.96 9.3 0.1 2.8 2 1 1 3 3 3 0 Helicase GH115_C PF17829.1 ABA81758.1 - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Gylcosyl hydrolase family 115 C-terminal domain RecX PF02631.16 ABA81758.1 - 0.48 10.9 4.3 0.39 11.2 1.2 2.4 2 0 0 2 2 2 0 RecX family Acetyltransf_17 PF17668.1 ABA81760.1 - 0.11 13.3 0.0 0.2 12.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain VirC1 PF07015.11 ABA81761.1 - 2.9e-21 75.8 0.1 3.7e-21 75.5 0.1 1.1 1 0 0 1 1 1 1 VirC1 protein CbiA PF01656.23 ABA81761.1 - 6.6e-10 39.1 0.0 1.1e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 ABA81761.1 - 1.1e-09 38.5 0.0 2.6e-09 37.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 ABA81761.1 - 7.6e-05 22.3 0.0 0.00033 20.2 0.0 1.9 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 ABA81761.1 - 0.00015 21.1 0.0 0.0012 18.3 0.0 2.2 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 ABA81761.1 - 0.00053 19.5 0.1 0.0009 18.8 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 ABA81761.1 - 0.0006 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 ABA81761.1 - 0.011 14.9 0.1 0.021 14.0 0.1 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase CLP1_P PF16575.5 ABA81761.1 - 0.042 13.6 0.0 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 ABA81761.1 - 0.053 13.1 0.1 0.11 12.1 0.1 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Herpes_ori_bp PF02399.15 ABA81761.1 - 0.059 11.4 0.0 0.079 11.0 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein AAA_16 PF13191.6 ABA81761.1 - 0.085 13.2 0.1 0.16 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 ABA81761.1 - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain COMP PF11598.8 ABA81761.1 - 0.24 11.9 2.4 10 6.7 0.8 2.5 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein DUF932 PF06067.11 ABA81762.1 - 2.3e-48 165.0 0.0 2.7e-48 164.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF932) RP-C_C PF11800.8 ABA81763.1 - 5.3e-23 82.2 0.1 1.4e-22 80.8 0.0 1.7 2 0 0 2 2 2 1 Replication protein C C-terminal region RP-C PF03428.13 ABA81763.1 - 1e-15 57.9 2.2 1.7e-15 57.1 2.2 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain MarR_2 PF12802.7 ABA81763.1 - 0.035 14.0 0.7 0.097 12.6 0.7 1.8 1 0 0 1 1 1 0 MarR family MerR PF00376.23 ABA81763.1 - 0.042 13.6 0.2 0.042 13.6 0.2 2.3 2 1 0 2 2 2 0 MerR family regulatory protein ATP-synt PF00231.19 ABA81764.1 - 4.2e-31 108.7 0.0 4.9e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 ATP synthase ATP-synt_ab PF00006.25 ABA81765.1 - 6.4e-59 199.2 0.0 8e-59 198.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 ABA81765.1 - 7.9e-23 81.2 0.0 1.2e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATPase PF06745.13 ABA81765.1 - 0.004 16.5 0.1 0.0058 16.0 0.1 1.2 1 0 0 1 1 1 1 KaiC ATPase_2 PF01637.18 ABA81765.1 - 0.0049 16.8 0.0 0.0078 16.2 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea ATP-synt_ab_N PF02874.23 ABA81765.1 - 0.031 14.8 1.2 0.069 13.7 1.2 1.6 1 0 0 1 1 1 0 ATP synthase alpha/beta family, beta-barrel domain AAA_16 PF13191.6 ABA81765.1 - 0.18 12.2 1.4 0.8 10.1 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain ATP-synt_B PF00430.18 ABA81766.1 - 1.6e-06 28.3 29.1 2.2e-06 27.8 29.1 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) DUF4055 PF13264.6 ABA81766.1 - 0.042 14.0 9.8 0.064 13.4 9.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) NifQ PF04891.12 ABA81766.1 - 5.7 7.3 7.4 8.3 6.7 7.4 1.3 1 0 0 1 1 1 0 NifQ ATP-synt_A PF00119.20 ABA81767.1 - 6.3e-44 150.5 10.4 7.3e-44 150.2 10.4 1.0 1 0 0 1 1 1 1 ATP synthase A chain ATPase_gene1 PF09527.10 ABA81768.1 - 6.1e-07 29.5 14.1 7.7e-07 29.2 14.1 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter ATP-synt_DE_N PF02823.16 ABA81769.1 - 2.4e-17 62.6 0.0 3.2e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_ab PF00006.25 ABA81770.1 - 3.9e-66 222.8 0.0 5.4e-66 222.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 ABA81770.1 - 5.6e-11 42.8 1.2 1.5e-10 41.5 1.2 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_25 PF13481.6 ABA81770.1 - 0.024 14.2 0.3 0.11 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 ABA81770.1 - 0.024 14.0 0.3 0.061 12.7 0.3 1.6 1 0 0 1 1 1 0 KaiC Pox_A32 PF04665.12 ABA81770.1 - 0.034 13.6 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Epimerase PF01370.21 ABA81772.1 - 4.4e-52 176.9 0.0 5e-52 176.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 ABA81772.1 - 4.4e-51 174.2 0.0 5.3e-51 174.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 ABA81772.1 - 1.7e-14 53.6 0.0 2e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 ABA81772.1 - 1e-11 44.5 0.0 2.1e-10 40.3 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 ABA81772.1 - 2e-11 43.4 0.0 3.1e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 ABA81772.1 - 1e-09 37.9 0.4 5.1e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.25 ABA81772.1 - 0.002 17.6 0.2 0.0072 15.8 0.2 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 ABA81772.1 - 0.12 12.0 0.8 0.36 10.4 0.8 1.8 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DUF740 PF05340.12 ABA81772.1 - 0.21 10.3 0.0 0.32 9.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF740) Sulfotransfer_1 PF00685.27 ABA81773.1 - 5e-09 36.0 0.0 6.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 ABA81773.1 - 9.6e-06 26.1 0.0 1.8e-05 25.2 0.0 1.6 1 1 0 1 1 1 1 Sulfotransferase family Sulfotransfer_2 PF03567.14 ABA81774.1 - 0.0013 18.7 0.2 0.0027 17.7 0.1 1.9 2 1 0 2 2 2 1 Sulfotransferase family Sulfotransfer_3 PF13469.6 ABA81774.1 - 0.067 13.6 0.3 0.1 12.9 0.2 1.6 1 1 0 1 1 1 0 Sulfotransferase family HemolysinCabind PF00353.19 ABA81776.1 - 8.8e-33 111.9 72.6 3.9e-09 36.3 9.2 7.7 3 2 5 8 8 8 7 RTX calcium-binding nonapeptide repeat (4 copies) AFP_2 PF18815.1 ABA81776.1 - 0.07 13.4 0.8 0.07 13.4 0.8 6.8 6 3 2 8 8 8 0 Bacterial antifreeze protein repeat DUF2793 PF10983.8 ABA81777.1 - 2.4e-30 104.2 3.0 6.1e-30 102.9 3.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2793) Sulfotransfer_3 PF13469.6 ABA81778.1 - 1.1e-06 29.2 0.0 1.1e-06 29.2 0.0 2.4 2 1 0 2 2 2 1 Sulfotransferase family Exonuc_VII_L PF02601.15 ABA81778.1 - 0.0028 17.3 10.6 0.0041 16.7 10.6 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit AAA_13 PF13166.6 ABA81778.1 - 0.022 13.4 2.7 0.028 13.1 2.7 1.1 1 0 0 1 1 1 0 AAA domain ATG16 PF08614.11 ABA81778.1 - 0.032 14.5 27.1 0.047 13.9 27.1 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) HOOK PF05622.12 ABA81778.1 - 0.055 11.6 14.9 0.078 11.1 14.9 1.2 1 0 0 1 1 1 0 HOOK protein Laminin_II PF06009.12 ABA81778.1 - 0.063 13.3 6.7 0.027 14.5 3.0 2.0 1 1 1 2 2 2 0 Laminin Domain II BRE1 PF08647.11 ABA81778.1 - 0.22 11.6 12.9 0.038 14.1 8.4 1.8 1 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF773 PF05600.12 ABA81778.1 - 0.28 9.9 10.6 0.41 9.3 10.6 1.1 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 DUF948 PF06103.11 ABA81778.1 - 0.34 11.2 2.8 2.8 8.2 2.7 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF812 PF05667.11 ABA81778.1 - 0.4 9.5 11.0 0.52 9.1 11.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF2203 PF09969.9 ABA81778.1 - 0.67 10.7 11.7 0.22 12.2 3.9 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) BLOC1_2 PF10046.9 ABA81778.1 - 0.75 10.1 7.1 0.61 10.4 1.8 2.7 1 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IATP PF04568.12 ABA81778.1 - 0.89 10.0 31.4 0.4 11.1 5.7 4.2 1 1 3 4 4 4 0 Mitochondrial ATPase inhibitor, IATP CENP-F_leu_zip PF10473.9 ABA81778.1 - 1.4 9.0 21.3 0.25 11.4 11.5 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FAM76 PF16046.5 ABA81778.1 - 1.5 8.1 5.0 2 7.7 5.0 1.2 1 0 0 1 1 1 0 FAM76 protein Jnk-SapK_ap_N PF09744.9 ABA81778.1 - 1.9 8.7 25.7 3.5 7.8 14.2 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 V_ATPase_I PF01496.19 ABA81778.1 - 1.9 6.3 6.5 2.6 5.8 6.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.11 ABA81778.1 - 2.1 7.1 20.6 3.4 6.5 19.7 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein Fib_alpha PF08702.10 ABA81778.1 - 3.7 7.7 6.5 5.7 7.1 6.5 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4407 PF14362.6 ABA81778.1 - 6 6.1 13.9 12 5.2 13.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ERM PF00769.19 ABA81778.1 - 7.1 6.4 32.8 1.5 8.6 19.3 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Complex1_LYR_2 PF13233.6 ABA81778.1 - 9.7 7.0 10.5 26 5.6 10.5 1.8 1 1 0 1 1 1 0 Complex1_LYR-like Sulfotransfer_1 PF00685.27 ABA81779.1 - 0.0028 17.2 0.0 0.0059 16.1 0.0 1.4 1 1 0 1 1 1 1 Sulfotransferase domain McrBC PF10117.9 ABA81779.1 - 0.2 10.8 0.0 0.3 10.2 0.0 1.3 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component Glyco_tran_WbsX PF14307.6 ABA81780.1 - 9.9e-109 364.0 0.0 1.2e-108 363.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase WbsX RgpF PF05045.12 ABA81780.1 - 1e-35 123.5 0.0 1.3e-35 123.1 0.0 1.1 1 0 0 1 1 1 1 Rhamnan synthesis protein F ABC2_membrane PF01061.24 ABA81781.1 - 2.5e-13 49.9 21.4 4e-13 49.3 21.4 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 ABA81781.1 - 2.7 7.0 22.7 0.74 8.9 18.6 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein GreA_GreB PF01272.19 ABA81782.1 - 5.4e-17 61.5 0.0 6.9e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term MS_channel PF00924.18 ABA81783.1 - 2.7e-35 121.8 0.0 3.2e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Sulfate_transp PF00916.20 ABA81784.1 - 3.4e-53 180.8 27.7 5.2e-27 94.6 5.2 2.2 2 0 0 2 2 2 2 Sulfate permease family STAS PF01740.21 ABA81784.1 - 1.2e-07 31.4 0.0 2.5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 ABA81784.1 - 0.00051 20.4 6.8 0.00051 20.4 6.8 3.9 4 0 0 4 4 4 3 Molybdate transporter of MFS superfamily STAS_2 PF13466.6 ABA81784.1 - 0.00094 19.5 0.1 0.0025 18.1 0.1 1.8 1 0 0 1 1 1 1 STAS domain Usp PF00582.26 ABA81785.1 - 8.4e-29 100.9 5.6 2.4e-15 57.3 1.1 3.2 2 1 1 3 3 3 3 Universal stress protein family DMT_YdcZ PF04657.13 ABA81786.1 - 8.5e-38 129.8 20.8 9.8e-38 129.6 20.8 1.0 1 0 0 1 1 1 1 Putative inner membrane exporter, YdcZ Polysacc_synt_C PF14667.6 ABA81786.1 - 0.0021 18.1 9.2 0.0021 18.1 9.2 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis C-terminal domain DUF997 PF06196.12 ABA81786.1 - 0.51 10.4 8.4 0.98 9.5 0.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF997) LysR_substrate PF03466.20 ABA81787.1 - 3.9e-22 78.6 9.0 3.9e-22 78.6 9.0 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 ABA81787.1 - 2.6e-18 65.7 2.6 3.7e-18 65.2 1.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 ABA81787.1 - 0.0017 18.1 0.4 0.012 15.3 0.5 2.1 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.20 ABA81787.1 - 0.021 14.7 0.4 0.051 13.5 0.4 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MerR_1 PF13411.6 ABA81789.1 - 2.5e-18 65.9 0.0 3.7e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 ABA81789.1 - 2.8e-17 62.2 0.3 1.5e-16 59.9 0.4 2.1 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 ABA81789.1 - 3.5e-06 27.4 0.7 4.6e-06 27.1 0.7 1.2 1 0 0 1 1 1 1 MerR, DNA binding Abhydrolase_1 PF00561.20 ABA81790.1 - 9.9e-17 61.4 0.2 3.1e-14 53.3 0.2 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 ABA81790.1 - 1.6e-09 38.7 12.6 1.9e-09 38.5 12.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 ABA81790.1 - 4.1e-08 32.8 1.0 7.4e-07 28.7 1.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 ABA81790.1 - 9.3e-05 22.6 0.0 0.00014 22.1 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain DUF1100 PF06500.11 ABA81790.1 - 0.0062 15.4 0.1 0.0086 14.9 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Ndr PF03096.14 ABA81790.1 - 0.0087 14.8 0.0 0.014 14.1 0.0 1.4 1 0 0 1 1 1 1 Ndr family Abhydrolase_5 PF12695.7 ABA81790.1 - 0.027 14.2 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 ABA81790.1 - 0.029 14.2 0.1 1 9.1 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase FSH1 PF03959.13 ABA81790.1 - 0.17 11.5 0.0 1.3 8.6 0.0 2.0 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Ser_hydrolase PF06821.13 ABA81791.1 - 4.1e-48 163.5 0.3 4.6e-48 163.3 0.3 1.0 1 0 0 1 1 1 1 Serine hydrolase Abhydrolase_6 PF12697.7 ABA81791.1 - 0.0024 18.5 18.0 0.0047 17.6 18.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 ABA81791.1 - 0.026 14.2 0.0 0.52 9.9 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 ABA81791.1 - 0.16 11.2 0.1 0.31 10.3 0.1 1.5 1 1 0 1 1 1 0 Serine aminopeptidase, S33 LysE PF01810.18 ABA81792.1 - 8e-33 113.5 9.7 9.5e-33 113.3 9.7 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 ABA81792.1 - 1.2 8.8 9.6 0.096 12.4 2.5 2.2 2 1 0 2 2 2 0 Integral membrane protein TerC family HTH_18 PF12833.7 ABA81793.1 - 3.6e-19 68.8 2.4 3.6e-19 68.8 2.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain AraC_binding PF02311.19 ABA81793.1 - 0.00034 20.5 0.0 0.00081 19.3 0.0 1.7 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 ABA81793.1 - 0.00069 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_AraC PF00165.23 ABA81793.1 - 0.0019 18.2 0.0 0.5 10.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_28 PF13518.6 ABA81793.1 - 0.029 14.5 6.6 2.7 8.2 0.5 3.5 3 0 0 3 3 3 0 Helix-turn-helix domain TauE PF01925.19 ABA81794.1 - 2.4e-28 99.4 40.7 2.9e-28 99.1 40.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE LD_cluster2 PF18163.1 ABA81794.1 - 0.093 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 SLOG cluster2 ABC_tran PF00005.27 ABA81795.1 - 6.5e-30 104.4 0.0 8.6e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 ABA81795.1 - 1.1e-08 35.3 0.0 0.00097 19.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 ABA81795.1 - 1.6e-07 31.0 0.1 0.014 14.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 ABA81795.1 - 9.8e-05 22.0 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 ABA81795.1 - 0.00019 21.7 0.1 0.0013 19.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 ABA81795.1 - 0.00022 21.7 1.3 0.00055 20.4 1.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 ABA81795.1 - 0.0003 19.7 0.0 0.23 10.2 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 ABA81795.1 - 0.00067 20.2 0.0 0.00097 19.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 ABA81795.1 - 0.0093 15.7 0.1 0.012 15.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 ABA81795.1 - 0.018 15.2 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain MeaB PF03308.16 ABA81795.1 - 0.039 12.9 1.0 0.046 12.7 0.2 1.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 ABA81795.1 - 0.044 13.9 0.1 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 ABA81795.1 - 0.073 13.3 0.1 1.5 9.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 ABA81795.1 - 0.087 12.7 0.2 0.48 10.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 ABA81795.1 - 0.091 12.3 0.1 0.51 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 ABA81795.1 - 0.096 13.1 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 ABA81795.1 - 0.13 12.2 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 ABA81795.1 - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase FecCD PF01032.18 ABA81796.1 - 5.8e-118 393.4 81.1 4.3e-61 206.6 33.2 2.1 2 0 0 2 2 2 2 FecCD transport family ABC-3 PF00950.17 ABA81796.1 - 0.029 13.9 26.3 0.035 13.6 3.6 2.8 2 1 0 2 2 2 0 ABC 3 transport family Peripla_BP_2 PF01497.18 ABA81797.1 - 1.3e-09 38.0 0.0 1.6e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TonB_dep_Rec PF00593.24 ABA81798.1 - 1.7e-59 203.0 20.6 1.7e-59 203.0 20.6 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 ABA81798.1 - 1.9e-24 86.3 0.2 9.6e-24 84.0 0.0 2.3 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 ABA81798.1 - 0.00038 20.2 0.0 0.0012 18.6 0.0 1.9 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain FecR PF04773.13 ABA81799.1 - 3.9e-16 59.5 0.0 7.3e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 ABA81799.1 - 1.5e-06 28.0 4.2 3.5e-06 26.8 4.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) DUF4974 PF16344.5 ABA81799.1 - 0.0067 16.4 0.0 0.0098 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4974) Sigma70_r4_2 PF08281.12 ABA81800.1 - 5.2e-15 54.9 0.4 3.2e-14 52.3 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 ABA81800.1 - 6.6e-11 41.8 1.5 6.6e-11 41.8 1.5 2.1 2 1 1 3 3 3 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 ABA81800.1 - 7.3e-07 28.6 0.0 2.4e-06 26.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 ABA81800.1 - 0.00042 20.3 3.4 0.00052 20.0 3.4 1.2 1 0 0 1 1 1 1 ECF sigma factor HTH_AsnC-type PF13404.6 ABA81800.1 - 0.027 14.3 2.2 0.2 11.5 0.0 3.1 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 ABA81800.1 - 0.046 13.5 2.3 0.18 11.7 0.0 2.8 3 0 0 3 3 3 0 Homeodomain-like domain KORA PF16509.5 ABA81800.1 - 0.051 13.9 0.0 0.86 9.9 0.0 2.4 2 1 1 3 3 3 0 TrfB plasmid transcriptional repressor DUF2774 PF11242.8 ABA81800.1 - 0.088 13.0 1.1 0.22 11.7 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2774) HTH_40 PF14493.6 ABA81800.1 - 0.13 12.7 0.0 0.35 11.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 ABA81800.1 - 0.2 11.5 1.9 24 4.8 0.0 3.0 2 2 0 2 2 2 0 Helix-turn-helix domain Cation_efflux PF01545.21 ABA81801.1 - 5.5e-48 163.4 15.3 6.7e-48 163.1 15.3 1.1 1 0 0 1 1 1 1 Cation efflux family MerR_1 PF13411.6 ABA81802.1 - 1.7e-18 66.4 0.0 2.8e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR-DNA-bind PF09278.11 ABA81802.1 - 3.1e-16 59.6 7.3 3.1e-16 59.6 7.3 1.8 2 0 0 2 2 2 1 MerR, DNA binding MerR PF00376.23 ABA81802.1 - 1e-13 50.8 2.1 2e-13 49.8 2.1 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_18 PF12833.7 ABA81803.1 - 8.9e-21 73.9 0.1 1.9e-20 72.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_2 PF07883.11 ABA81803.1 - 2e-08 33.8 0.0 3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 ABA81803.1 - 1.1e-07 31.8 0.0 2.5e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_AraC PF00165.23 ABA81803.1 - 5.5e-06 26.4 0.0 0.097 12.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding_2 PF14525.6 ABA81803.1 - 0.0056 16.4 2.2 0.0067 16.1 0.2 2.0 1 1 1 2 2 2 1 AraC-binding-like domain HTH_23 PF13384.6 ABA81803.1 - 0.035 13.9 1.8 0.85 9.5 0.4 2.4 2 0 0 2 2 2 0 Homeodomain-like domain ABC2_membrane_5 PF13346.6 ABA81804.1 - 0.0051 16.4 1.8 0.0063 16.1 1.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein RHS_repeat PF05593.14 ABA81806.1 - 6.9e-20 71.2 106.3 0.031 14.8 7.3 22.1 18 5 5 23 23 23 10 RHS Repeat Importin_rep_5 PF18816.1 ABA81806.1 - 0.12 12.7 0.0 2.1 8.7 0.0 2.9 2 0 0 2 2 2 0 Importin repeat Rib PF08428.10 ABA81806.1 - 4.2 7.4 7.8 4.8 7.2 0.1 3.8 3 1 1 4 4 4 0 Rib/alpha-like repeat Phage_lysis PF03245.13 ABA81808.1 - 0.0044 17.1 0.4 0.007 16.5 0.4 1.3 1 0 0 1 1 1 1 Bacteriophage Rz lysis protein MAAL_N PF05034.13 ABA81808.1 - 0.15 11.7 0.1 0.21 11.2 0.1 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus HTH_29 PF13551.6 ABA81810.1 - 2.4e-09 37.1 1.5 8.3e-09 35.3 1.5 2.0 1 0 0 1 1 1 1 Winged helix-turn helix rve PF00665.26 ABA81810.1 - 1.3e-08 35.0 0.1 2.3e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_32 PF13565.6 ABA81810.1 - 3.9e-08 33.8 1.2 3.9e-08 33.8 1.2 3.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.6 ABA81810.1 - 4.8e-08 32.6 3.6 5.5e-06 26.0 1.1 3.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 ABA81810.1 - 5.3e-08 32.9 1.1 3.5e-06 27.0 0.7 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 ABA81810.1 - 0.0054 16.9 0.3 1.1 9.5 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 ABA81810.1 - 0.044 14.0 0.0 0.16 12.2 0.0 2.0 1 0 0 1 1 1 0 Transposase PsbQ PF05757.11 AGY32383.1 - 0.1 12.4 0.1 0.11 12.2 0.1 1.0 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) DEC-1_N PF04625.13 AGY32383.1 - 6.1 5.8 7.2 6.2 5.7 7.2 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Rhomboid PF01694.22 AGY32385.1 - 9.1e-15 54.9 18.0 9.1e-15 54.9 18.0 2.0 2 0 0 2 2 2 2 Rhomboid family HCV_NS4a PF01006.20 AGY32391.1 - 0.12 12.2 2.8 0.15 11.8 2.8 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a LPAM_1 PF08139.12 AGY32395.1 - 0.39 11.3 4.5 0.53 10.9 4.5 1.2 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Phage_connect_1 PF05135.13 AGY32400.1 - 5.2e-06 26.9 0.0 6.3e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Phage gp6-like head-tail connector protein Gly-zipper_YMGG PF13441.6 AGY32403.1 - 0.04 13.6 15.0 0.052 13.3 15.0 1.3 1 1 0 1 1 1 0 YMGG-like Gly-zipper MccV PF17508.2 AGY32403.1 - 0.23 12.0 2.7 0.24 12.0 2.7 1.1 1 0 0 1 1 1 0 Microcin V bacteriocin Gly-zipper_OmpA PF13436.6 AGY32403.1 - 0.34 10.7 15.3 0.11 12.3 12.4 1.6 2 0 0 2 2 2 0 Glycine-zipper domain Gly-zipper_Omp PF13488.6 AGY32403.1 - 1.9 8.6 16.6 3.6 7.7 16.6 1.7 1 1 0 1 1 1 0 Glycine zipper Bacteriocin_IIc PF10439.9 AGY32403.1 - 2 8.6 13.9 3.1 8.0 13.9 1.4 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Trypsin_2 PF13365.6 AGY32406.1 - 9e-05 23.4 0.0 0.00017 22.5 0.0 1.5 1 1 0 1 1 1 1 Trypsin-like peptidase domain Peptidase_S7 PF00949.21 AGY32406.1 - 0.6 9.9 2.3 15 5.4 0.4 2.6 2 1 1 3 3 3 0 Peptidase S7, Flavivirus NS3 serine protease LPAM_1 PF08139.12 AGY32407.1 - 0.027 15.0 0.5 0.037 14.5 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Entericidin PF08085.11 AGY32407.1 - 0.071 13.2 2.1 0.12 12.5 2.1 1.4 1 0 0 1 1 1 0 Entericidin EcnA/B family PHP PF02811.19 AGY32412.1 - 0.026 14.8 0.0 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 PHP domain DUF3604 PF12228.8 AGY32412.1 - 0.027 12.9 0.4 0.047 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3604) Phage_TAC_11 PF11836.8 AGY32415.1 - 0.0014 18.7 0.0 0.0021 18.2 0.0 1.3 1 0 0 1 1 1 1 Phage tail tube protein, GTA-gp10 Phage_TTP_12 PF16461.5 AGY32416.1 - 2.6e-24 85.4 0.0 3.2e-24 85.1 0.0 1.0 1 0 0 1 1 1 1 Lambda phage tail tube protein, TTP Phage_tail_3 PF08813.11 AGY32416.1 - 0.014 15.0 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 Phage tail tube protein, TTP Zn_ribbon_recom PF13408.6 AGY32418.1 - 0.07 13.6 1.2 0.18 12.4 1.2 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain SPAN-X PF07458.12 AGY32418.1 - 0.15 12.6 0.1 0.44 11.0 0.1 1.8 1 0 0 1 1 1 0 Sperm protein associated with nucleus, mapped to X chromosome Peptidase_S24 PF00717.23 AGY32419.1 - 1e-08 35.0 0.1 1.3e-08 34.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 AGY32419.1 - 9.2e-05 22.2 0.0 0.00077 19.3 0.0 1.9 1 1 1 2 2 2 1 Signal peptidase, peptidase S26 Proton_antipo_M PF00361.20 AGY32422.1 - 2.5e-62 210.7 15.8 2.5e-62 210.7 15.8 1.6 1 1 0 1 1 1 1 Proton-conducting membrane transporter Carb_kinase PF01256.17 AGY32423.1 - 4.8e-49 167.0 1.7 6e-49 166.7 1.7 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 AGY32423.1 - 0.0027 17.1 0.0 0.0042 16.5 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase YjeF_N PF03853.15 AGY32423.1 - 0.54 10.1 6.3 0.21 11.4 0.5 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus YjeF_N PF03853.15 AGY32424.1 - 5.8e-29 101.2 0.0 1.4e-28 99.9 0.0 1.6 1 1 0 1 1 1 1 YjeF-related protein N-terminus Phage_AlpA PF05930.12 AGY32427.1 - 0.0012 18.6 0.2 0.0015 18.3 0.2 1.2 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) HTH_17 PF12728.7 AGY32427.1 - 0.017 15.3 0.1 0.022 14.9 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0051 PF01458.17 AGY32434.1 - 4.3e-59 199.8 0.1 5.3e-59 199.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF4231 PF14015.6 AGY32435.1 - 0.054 14.0 0.0 0.059 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) JSRP PF15312.6 AGY32435.1 - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Junctional sarcoplasmic reticulum protein Fer4 PF00037.27 AGY32436.1 - 1.4e-06 27.9 19.0 5.7e-06 25.9 3.2 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 AGY32436.1 - 1.1e-05 25.2 14.9 0.00034 20.6 3.3 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 AGY32436.1 - 1.2e-05 25.8 23.8 0.00043 20.8 12.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AGY32436.1 - 4.8e-05 23.2 16.3 0.0039 17.2 3.0 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 AGY32436.1 - 0.0001 22.4 24.7 0.0044 17.2 13.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 AGY32436.1 - 0.00057 20.0 12.4 0.00057 20.0 12.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 AGY32436.1 - 0.0041 17.5 16.6 0.0077 16.7 2.1 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 AGY32436.1 - 0.01 16.4 1.7 0.01 16.4 1.7 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 AGY32436.1 - 0.015 15.7 11.0 0.022 15.2 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 AGY32436.1 - 0.13 13.2 15.8 0.096 13.6 7.0 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 AGY32436.1 - 0.18 12.8 20.0 0.44 11.6 3.9 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 AGY32436.1 - 0.27 11.4 16.4 1.2 9.3 16.4 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain PROL5-SMR PF15621.6 AGY32438.1 - 3.4 8.3 5.8 46 4.6 6.6 1.9 1 1 1 2 2 2 0 Proline-rich submaxillary gland androgen-regulated family DUF465 PF04325.13 AGY32439.1 - 1.2e-13 50.9 4.5 1.3e-13 50.7 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF465) Seryl_tRNA_N PF02403.22 AGY32439.1 - 0.025 14.8 3.3 0.029 14.6 3.3 1.0 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF5595 PF18077.1 AGY32439.1 - 0.049 13.7 2.9 1.7 8.8 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) DivIC PF04977.15 AGY32439.1 - 0.45 10.3 4.4 3.6 7.4 1.1 2.0 1 1 1 2 2 2 0 Septum formation initiator FlaC_arch PF05377.11 AGY32439.1 - 0.48 10.9 2.9 4.7 7.7 0.1 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Pyrid_ox_like PF16242.5 AGY32441.1 - 0.17 11.4 0.0 0.18 11.4 0.0 1.0 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like TrbC PF04956.13 AGY32442.1 - 0.065 13.5 9.0 0.074 13.3 9.0 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF3487 PF11990.8 AGY32442.1 - 0.61 10.0 3.1 0.7 9.8 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) Phage_holin_3_6 PF07332.11 AGY32442.1 - 2.1 8.4 9.7 2.6 8.1 9.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III XhlA PF10779.9 AGY32442.1 - 2.7 8.2 5.7 0.47 10.7 1.4 1.8 1 1 1 2 2 2 0 Haemolysin XhlA DUF2244 PF10003.9 AGY32442.1 - 7.9 6.2 7.3 8.7 6.0 7.3 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Sld5 PF05916.11 AGY32445.1 - 0.078 13.4 0.0 0.083 13.4 0.0 1.1 1 0 0 1 1 1 0 GINS complex protein TfoX_N PF04993.13 AGY32446.1 - 0.078 13.2 0.0 0.089 13.0 0.0 1.1 1 0 0 1 1 1 0 TfoX N-terminal domain Histone_HNS PF00816.21 AGY32448.1 - 9.7e-09 35.9 0.2 1.2e-08 35.6 0.2 1.2 1 0 0 1 1 1 1 H-NS histone family EI24 PF07264.11 AGY32450.1 - 0.0043 17.3 2.1 0.0044 17.3 2.1 1.1 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF2231 PF09990.9 AGY32452.1 - 1.2e-20 73.9 10.1 1.2e-20 73.9 10.1 1.4 2 0 0 2 2 2 1 Predicted membrane protein (DUF2231) RseC_MucC PF04246.12 AGY32456.1 - 1.5e-17 63.8 0.1 1.7e-17 63.6 0.1 1.0 1 0 0 1 1 1 1 Positive regulator of sigma(E), RseC/MucC TonB_dep_Rec PF00593.24 AGY32457.1 - 4.7e-59 201.5 18.2 6.3e-59 201.1 18.2 1.2 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AGY32457.1 - 1.7e-25 89.6 0.9 4.2e-25 88.4 0.9 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AGY32457.1 - 7.8e-06 25.1 0.0 1.4e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Outer membrane protein beta-barrel family DUF5421 PF17458.2 AGY32457.1 - 0.19 11.1 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5421) Phage_P2_GpE PF06528.12 AGY32462.1 - 2.6e-16 58.9 3.2 3.1e-16 58.6 3.2 1.1 1 0 0 1 1 1 1 Phage P2 GpE Gas_vesicle PF00741.18 AGY32466.1 - 4.3e-10 39.6 7.4 5.1e-10 39.3 7.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein HCV_NS4a PF01006.20 AGY32468.1 - 0.43 10.4 2.4 0.73 9.6 2.4 1.4 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a HATPase_c_2 PF13581.6 AGY32473.1 - 0.86 9.6 6.5 1.1 9.2 6.5 1.1 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4686 PF15742.5 AGY32474.1 - 0.005 16.0 0.5 0.0053 15.9 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4686) THOC7 PF05615.13 AGY32474.1 - 0.034 14.4 5.0 0.041 14.2 5.0 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 DUF3301 PF11743.8 AGY32474.1 - 0.12 12.1 1.0 0.19 11.4 0.8 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3301) GvpG PF05120.12 AGY32474.1 - 0.12 12.3 1.0 0.17 11.9 0.4 1.5 1 1 0 1 1 1 0 Gas vesicle protein G UPF0167 PF03691.14 AGY32483.1 - 0.063 13.1 0.0 0.066 13.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) PNPase_C PF12111.8 AGY32485.1 - 0.43 10.0 3.3 0.6 9.6 3.3 1.2 1 0 0 1 1 1 0 Polyribonucleotide phosphorylase C terminal Acyl-CoA_dh_2 PF08028.11 AGY32486.1 - 9e-23 81.0 1.0 9e-23 81.0 1.0 2.6 4 0 0 4 4 4 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AGY32486.1 - 1.2e-07 32.4 1.2 3.8e-07 30.8 1.1 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AGY32486.1 - 3.1e-07 30.7 2.6 1.2e-06 28.8 1.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain DUF4127 PF13552.6 AGY32486.1 - 0.035 12.7 0.0 0.051 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) HTH_3 PF01381.22 AGY32487.1 - 9.8e-09 35.1 0.0 1.4e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 AGY32487.1 - 7e-08 32.7 0.1 7e-08 32.7 0.1 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 AGY32487.1 - 3.3e-07 30.2 0.0 4.4e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 AGY32487.1 - 0.00019 21.8 0.0 0.0003 21.1 0.0 1.5 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 AGY32487.1 - 0.072 13.0 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_3 PF01596.17 AGY32488.1 - 0.059 12.5 0.0 0.065 12.4 0.0 1.0 1 0 0 1 1 1 0 O-methyltransferase CcdB PF01845.17 AGY32490.1 - 1.3e-06 28.6 0.0 1.4e-06 28.4 0.0 1.0 1 0 0 1 1 1 1 CcdB protein WGR PF05406.15 AGY32493.1 - 3.3e-15 55.9 0.0 3.6e-15 55.8 0.0 1.0 1 0 0 1 1 1 1 WGR domain PSK_trans_fac PF07704.11 AGY32501.1 - 1.6e-17 64.0 0.8 1.7e-17 64.0 0.8 1.0 1 0 0 1 1 1 1 Rv0623-like transcription factor RHH_1 PF01402.21 AGY32501.1 - 0.049 13.6 1.8 0.099 12.6 0.5 2.2 1 1 2 3 3 3 0 Ribbon-helix-helix protein, copG family PKcGMP_CC PF16808.5 AGY32501.1 - 0.056 13.3 0.1 8.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase PhdYeFM_antitox PF02604.19 AGY32503.1 - 4.3e-12 45.7 0.1 3e-11 43.0 0.0 2.0 2 0 0 2 2 2 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Usp PF00582.26 AGY32505.1 - 9.8e-27 94.2 9.2 1.1e-12 48.7 2.1 3.2 2 1 1 3 3 3 3 Universal stress protein family Nmad5 PF18757.1 AGY32507.1 - 0.16 12.1 0.1 0.2 11.8 0.1 1.1 1 0 0 1 1 1 0 Nucleotide modification associated domain 5 T2SSM PF04612.12 AGY32508.1 - 0.076 13.1 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M HTH_31 PF13560.6 AGY32509.1 - 1.5e-06 28.4 0.9 2e-06 28.0 0.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AGY32509.1 - 1.8e-05 24.7 0.0 2.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix MqsA_antitoxin PF15731.5 AGY32509.1 - 0.00086 19.4 0.0 0.001 19.2 0.0 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 AGY32509.1 - 0.0015 18.3 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 AGY32509.1 - 0.0044 17.1 0.3 0.0065 16.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 AGY32509.1 - 0.013 15.5 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.6 AGY32509.1 - 0.042 13.7 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 AGY32509.1 - 0.068 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein Phe_ZIP PF08916.11 AGY32509.1 - 0.15 12.8 0.7 0.8 10.5 0.3 2.0 2 0 0 2 2 2 0 Phenylalanine zipper DUF1525 PF07511.11 AGY32510.1 - 0.074 13.2 0.8 0.13 12.4 0.5 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1525) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 04:31:01 2019 # [ok]