# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Bac_DnaA PF00308.18 CQR51031.1 - 3.6e-107 357.2 0.3 6.5e-107 356.3 0.0 1.6 2 0 0 2 2 2 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 CQR51031.1 - 6e-31 106.3 0.2 1.1e-29 102.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein helix-turn-helix DnaA_N PF11638.8 CQR51031.1 - 9.4e-15 54.1 0.2 2.2e-14 52.9 0.2 1.6 1 0 0 1 1 1 1 DnaA N-terminal domain IstB_IS21 PF01695.17 CQR51031.1 - 2.7e-12 46.8 0.0 6.1e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 CQR51031.1 - 8.9e-08 32.6 0.0 2.7e-07 31.1 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AFG1_ATPase PF03969.16 CQR51031.1 - 0.00012 21.2 0.1 0.01 14.7 0.0 2.3 1 1 1 2 2 2 1 AFG1-like ATPase ATPase_2 PF01637.18 CQR51031.1 - 0.00029 20.8 0.2 0.00097 19.1 0.2 1.8 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 CQR51031.1 - 0.002 18.4 0.5 0.059 13.7 0.0 3.1 3 1 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 CQR51031.1 - 0.002 18.5 0.1 0.0096 16.3 0.0 2.2 2 1 0 2 2 2 1 RNA helicase AAA_22 PF13401.6 CQR51031.1 - 0.022 15.1 0.6 4.9 7.4 0.4 3.0 2 1 0 2 2 2 0 AAA domain Eaf7 PF07904.13 CQR51031.1 - 0.051 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 Chromatin modification-related protein EAF7 DNA_pol3_beta PF00712.19 CQR51036.1 - 1.1e-41 141.7 7.8 1.4e-32 112.4 0.3 3.1 3 0 0 3 3 3 2 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_2 PF02767.16 CQR51036.1 - 4.7e-39 133.2 1.1 2.5e-30 105.1 0.1 2.9 2 1 0 2 2 2 2 DNA polymerase III beta subunit, central domain DNA_pol3_beta_3 PF02768.15 CQR51036.1 - 1.1e-33 115.6 1.4 2.5e-30 104.8 0.2 2.4 2 0 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain S4_2 PF13275.6 CQR51038.1 - 5.2e-28 96.6 0.2 6e-28 96.5 0.2 1.1 1 0 0 1 1 1 1 S4 domain S4 PF01479.25 CQR51038.1 - 3.7e-05 23.3 0.1 5.3e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 S4 domain SMC_N PF02463.19 CQR51041.1 - 2e-14 53.6 0.1 2.7e-14 53.2 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR51041.1 - 4e-08 33.4 0.3 0.0035 17.2 0.0 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR51041.1 - 1e-05 25.4 1.4 0.00062 19.6 0.0 2.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 CQR51041.1 - 2.4e-05 24.9 0.3 5.4e-05 23.8 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR51041.1 - 0.035 13.8 0.0 0.092 12.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF370 PF04025.12 CQR51045.1 - 2.3e-09 37.2 0.8 2.7e-09 37.0 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF370) PriX PF18689.1 CQR51045.1 - 0.025 14.9 1.3 0.028 14.7 1.3 1.0 1 0 0 1 1 1 0 Primase X DNA_gyraseB PF00204.25 CQR51046.1 - 3.9e-68 228.3 0.3 6.2e-68 227.7 0.3 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 CQR51046.1 - 1.9e-30 104.8 0.1 5.5e-30 103.3 0.1 1.9 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 CQR51046.1 - 5.8e-21 75.1 0.2 1.8e-20 73.5 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 CQR51046.1 - 2.8e-19 69.3 0.1 1.6e-18 66.8 0.0 2.4 3 0 0 3 3 3 1 Toprim domain HATPase_c_3 PF13589.6 CQR51046.1 - 0.0017 18.2 0.1 0.0038 17.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.6 CQR51046.1 - 0.063 13.8 0.7 7.2 7.2 0.0 3.3 3 0 0 3 3 3 0 Toprim domain ATPgrasp_YheCD PF14398.6 CQR51049.1 - 2.5e-59 200.6 0.0 5.8e-59 199.4 0.0 1.5 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR51049.1 - 1.9e-07 30.6 0.0 2.8e-05 23.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp TTL PF03133.15 CQR51049.1 - 0.0032 16.6 0.0 0.0078 15.4 0.0 1.6 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family Dala_Dala_lig_C PF07478.13 CQR51049.1 - 0.024 14.2 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus DNA_topoisoIV PF00521.20 CQR51050.1 - 9.4e-164 545.3 0.7 1.2e-163 544.9 0.7 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 CQR51050.1 - 9.6e-81 265.1 20.1 2.7e-13 49.2 0.5 6.9 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller NTase_sub_bind PF08780.11 CQR51050.1 - 0.0022 17.9 0.4 0.0051 16.8 0.4 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like Nab6_mRNP_bdg PF10567.9 CQR51050.1 - 0.073 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA-recognition motif HD_5 PF13487.6 CQR51053.1 - 1.2e-14 54.3 0.1 2.8e-14 53.1 0.1 1.7 1 0 0 1 1 1 1 HD domain HD PF01966.22 CQR51053.1 - 3.4e-13 49.9 0.0 8.3e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 HD domain DUF3391 PF11871.8 CQR51053.1 - 0.00014 22.4 0.0 0.00032 21.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3391) HDOD PF08668.12 CQR51053.1 - 0.00088 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 HDOD domain Gin PF10764.9 CQR51064.1 - 2.9e-20 71.9 2.1 3.5e-20 71.7 2.1 1.1 1 0 0 1 1 1 1 Inhibitor of sigma-G Gin zf-C3HC4_3 PF13920.6 CQR51064.1 - 0.016 15.1 0.8 0.023 14.6 0.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.11 CQR51064.1 - 0.024 14.6 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_5 PF14634.6 CQR51064.1 - 0.096 12.7 1.8 2.3 8.2 0.0 2.1 2 0 0 2 2 2 0 zinc-RING finger domain zf-trcl PF13451.6 CQR51064.1 - 0.12 12.3 0.4 0.12 12.3 0.4 1.8 2 0 0 2 2 2 0 Probable zinc-ribbon domain OKR_DC_1 PF01276.20 CQR51066.1 - 6.7e-66 222.7 0.0 4.4e-65 220.0 0.0 1.9 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.15 CQR51066.1 - 4.6e-10 39.9 0.0 8.9e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain SepSecS PF05889.13 CQR51066.1 - 3.6e-07 29.2 0.0 5.5e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 CQR51066.1 - 5.3e-06 25.9 0.0 6.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 CQR51066.1 - 0.0014 17.9 0.0 0.003 16.8 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR51066.1 - 0.0031 16.9 0.2 0.0051 16.2 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 CQR51066.1 - 0.011 14.8 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 CQR51066.1 - 0.22 10.0 0.0 0.74 8.3 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Thymidylate_kin PF02223.17 CQR51068.1 - 6.9e-57 192.1 0.0 7.8e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 CQR51068.1 - 3.4e-06 27.4 0.0 4.6e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 CQR51068.1 - 0.0011 18.8 0.0 0.0056 16.5 0.0 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 CQR51068.1 - 0.01 16.0 0.0 0.024 14.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 CQR51068.1 - 0.013 15.4 0.1 0.45 10.4 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.6 CQR51068.1 - 0.014 15.9 0.5 0.14 12.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 CQR51068.1 - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 CQR51068.1 - 0.02 15.3 0.0 0.024 15.0 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR51068.1 - 0.022 15.3 0.0 0.15 12.6 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 CQR51068.1 - 0.046 13.4 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 CQR51068.1 - 0.061 13.4 0.1 0.87 9.7 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase KAP_NTPase PF07693.14 CQR51068.1 - 0.068 12.4 0.0 0.068 12.4 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_22 PF13401.6 CQR51068.1 - 0.076 13.3 0.0 0.11 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 CQR51068.1 - 0.094 11.8 0.1 0.36 9.9 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein CdAMP_rec PF06153.11 CQR51070.1 - 1.2e-50 170.2 0.1 1.4e-50 170.1 0.1 1.0 1 0 0 1 1 1 1 Cyclic-di-AMP receptor P-II PF00543.22 CQR51070.1 - 0.019 15.6 0.7 0.33 11.6 0.7 2.8 1 1 0 1 1 1 0 Nitrogen regulatory protein P-II DUF327 PF03885.13 CQR51074.1 - 4.6e-39 133.6 1.1 5.3e-39 133.4 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF327) MSP7_C PF12948.7 CQR51074.1 - 0.018 15.7 0.4 0.027 15.2 0.4 1.2 1 0 0 1 1 1 0 MSP7-like protein C-terminal domain TTRAP PF14203.6 CQR51074.1 - 0.034 14.1 0.5 2.7 8.0 0.1 2.4 2 0 0 2 2 2 0 Putative tranposon-transfer assisting protein Blo-t-5 PF11642.8 CQR51074.1 - 0.27 11.2 4.2 0.48 10.4 1.0 2.0 1 1 1 2 2 2 0 Mite allergen Blo t 5 ZapA PF05164.13 CQR51074.1 - 0.3 11.6 3.6 3.1 8.3 0.5 2.2 1 1 1 2 2 2 0 Cell division protein ZapA DNA_pol3_delta2 PF13177.6 CQR51076.1 - 1.8e-56 190.4 0.0 2.5e-56 190.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNApol3-delta_C PF09115.10 CQR51076.1 - 0.0066 17.0 0.5 0.014 15.9 0.5 1.7 1 0 0 1 1 1 1 DNA polymerase III, delta subunit, C terminal Mg_chelatase PF01078.21 CQR51076.1 - 0.0083 15.5 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI zf-B_box PF00643.24 CQR51076.1 - 0.016 15.3 4.9 0.027 14.6 4.9 1.3 1 0 0 1 1 1 0 B-box zinc finger PSP1 PF04468.12 CQR51078.1 - 3.3e-31 107.4 0.9 4.8e-31 106.9 0.9 1.3 1 0 0 1 1 1 1 PSP1 C-terminal conserved region YabA PF06156.13 CQR51081.1 - 1.5e-27 96.2 0.1 1.8e-27 96.0 0.1 1.1 1 0 0 1 1 1 1 Initiation control protein YabA TSC22 PF01166.18 CQR51081.1 - 0.00099 19.4 0.2 0.0016 18.7 0.2 1.3 1 0 0 1 1 1 1 TSC-22/dip/bun family Herpes_BLRF2 PF05812.12 CQR51081.1 - 0.047 13.8 0.7 0.058 13.5 0.7 1.1 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein NRBF2 PF08961.10 CQR51081.1 - 0.069 12.8 0.3 0.075 12.6 0.3 1.1 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator MTS PF05175.14 CQR51082.1 - 5.8e-08 32.5 0.0 1.5e-07 31.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 CQR51082.1 - 1.2e-07 32.3 0.0 4e-07 30.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR51082.1 - 0.00044 20.8 0.0 0.0021 18.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 CQR51082.1 - 0.00063 19.4 0.0 0.0009 18.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 CQR51082.1 - 0.0013 18.5 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 CQR51082.1 - 0.0025 17.5 0.0 0.0044 16.7 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 CQR51082.1 - 0.0043 16.9 0.0 0.0059 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 CQR51082.1 - 0.0047 16.7 0.0 0.0075 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 CQR51082.1 - 0.028 14.0 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 CQR51082.1 - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TP_methylase PF00590.20 CQR51085.1 - 5.6e-27 95.1 0.0 7.6e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PucR PF07905.11 CQR51085.1 - 0.17 12.1 0.0 0.41 10.9 0.0 1.6 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family MazE_antitoxin PF04014.18 CQR51087.1 - 3.5e-11 42.8 0.0 4.5e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 CQR51087.1 - 0.1 12.6 0.0 0.16 11.9 0.0 1.4 1 1 0 1 1 1 0 MraZ protein, putative antitoxin-like HD PF01966.22 CQR51089.1 - 3.5e-15 56.3 0.1 8.5e-15 55.1 0.1 1.7 1 0 0 1 1 1 1 HD domain TatD_DNase PF01026.21 CQR51091.1 - 5.9e-84 281.4 0.0 6.7e-84 281.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 CQR51091.1 - 0.11 11.8 0.1 0.55 9.5 0.1 1.9 1 1 0 1 1 1 0 Amidohydrolase family DUF348 PF03990.14 CQR51093.1 - 3.1e-18 65.2 3.4 2.7e-10 39.8 0.2 2.9 2 0 0 2 2 2 2 G5-linked-Ubiquitin-like domain 3D PF06725.11 CQR51093.1 - 1.1e-16 60.8 0.3 3.1e-16 59.3 0.1 1.9 2 0 0 2 2 2 1 3D domain G5 PF07501.12 CQR51093.1 - 2.7e-15 56.6 1.2 7.9e-15 55.1 1.2 1.8 1 0 0 1 1 1 1 G5 domain DUF4093 PF13331.6 CQR51095.1 - 1.6e-27 95.7 0.0 2.7e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4093) Toprim PF01751.22 CQR51095.1 - 1.1e-06 28.8 0.2 2.1e-06 27.9 0.2 1.5 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 CQR51095.1 - 6.1e-06 26.6 0.2 1.1e-05 25.8 0.2 1.4 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 CQR51095.1 - 0.0053 17.2 0.0 0.0087 16.5 0.0 1.3 1 0 0 1 1 1 1 Toprim-like RrnaAD PF00398.20 CQR51097.1 - 2e-65 220.5 0.0 2.4e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 CQR51097.1 - 8.6e-07 28.8 0.1 1.3e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_25 PF13649.6 CQR51097.1 - 0.0033 18.1 0.0 0.0063 17.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR51097.1 - 0.0082 16.8 0.0 0.015 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR51097.1 - 0.022 15.5 0.0 0.039 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 CQR51097.1 - 0.037 13.9 0.0 0.052 13.4 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Peptidase_U57 PF05582.12 CQR51101.1 - 5.5e-107 357.2 0.0 6.2e-107 357.0 0.0 1.0 1 0 0 1 1 1 1 YabG peptidase U57 Erythro_esteras PF05139.14 CQR51101.1 - 0.044 13.6 0.1 0.1 12.4 0.1 1.6 1 1 0 1 1 1 0 Erythromycin esterase ABC_transp_aux PF09822.9 CQR51101.1 - 0.071 12.6 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system VEG PF06257.11 CQR51103.1 - 2.5e-32 110.7 0.3 2.9e-32 110.5 0.3 1.1 1 0 0 1 1 1 1 Biofilm formation stimulator VEG SASP PF00269.20 CQR51105.1 - 4e-05 23.6 0.5 6.6e-05 22.8 0.5 1.3 1 0 0 1 1 1 1 Small, acid-soluble spore proteins, alpha/beta type GHMP_kinases_C PF08544.13 CQR51106.1 - 2.8e-12 46.8 0.1 6.1e-12 45.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 CQR51106.1 - 6.6e-12 45.5 0.6 2e-11 43.9 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain PuR_N PF09182.10 CQR51108.1 - 5.6e-31 106.3 0.0 1e-30 105.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal Pribosyltran PF00156.27 CQR51108.1 - 7.8e-20 71.0 0.3 1.1e-19 70.5 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain SpoVG PF04026.12 CQR51110.1 - 1e-36 124.9 0.1 1.2e-36 124.7 0.1 1.0 1 0 0 1 1 1 1 SpoVG Hexapep PF00132.24 CQR51112.1 - 2.6e-27 93.5 18.7 2.5e-07 30.1 0.3 5.9 3 2 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 CQR51112.1 - 1.6e-22 80.6 1.4 2.5e-22 80.0 0.7 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 CQR51112.1 - 7e-19 68.4 0.1 1.1e-18 67.8 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 CQR51112.1 - 4.4e-12 45.5 15.1 4.2e-05 23.2 0.3 6.5 5 2 1 6 6 6 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 CQR51112.1 - 3.8e-08 33.3 3.7 6.7e-08 32.5 3.6 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 CQR51112.1 - 0.0045 16.9 0.0 0.0074 16.2 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 CQR51112.1 - 0.0053 16.0 0.0 0.0092 15.2 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like DUF2064 PF09837.9 CQR51112.1 - 0.024 14.4 1.4 0.042 13.7 0.4 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF4954 PF16314.5 CQR51112.1 - 0.62 8.1 6.8 2 6.5 0.5 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4954) Pribosyltran_N PF13793.6 CQR51115.1 - 4.1e-52 175.0 0.0 9.3e-52 173.9 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 CQR51115.1 - 6.4e-27 94.8 1.7 2.4e-25 89.6 0.2 2.9 2 1 1 3 3 3 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 CQR51115.1 - 2e-22 79.4 0.3 1.2e-20 73.6 0.1 2.7 3 1 0 3 3 3 1 Phosphoribosyl transferase domain DUF3928 PF13065.6 CQR51117.1 - 0.1 13.4 0.2 0.12 13.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) Pept_tRNA_hydro PF01195.19 CQR51118.1 - 1.2e-59 201.1 0.1 1.4e-59 200.9 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase DUF2757 PF10955.8 CQR51120.1 - 9.8e-26 89.8 0.1 1e-25 89.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2757) zf-FCS PF06467.14 CQR51120.1 - 0.01 15.7 0.2 0.1 12.5 0.0 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-BED PF02892.15 CQR51120.1 - 0.02 14.9 0.1 2.6 8.2 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger DZR PF12773.7 CQR51120.1 - 0.027 14.5 0.0 0.043 13.8 0.0 1.3 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 CQR51120.1 - 0.038 13.9 1.5 0.17 11.8 0.4 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Acetyltransf_CG PF14542.6 CQR51120.1 - 0.11 12.6 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HSP33 PF01430.19 CQR51120.1 - 0.13 11.7 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Hsp33 protein CarD_CdnL_TRCF PF02559.16 CQR51122.1 - 9.7e-30 103.1 0.4 3.4e-29 101.4 0.4 2.1 1 0 0 1 1 1 1 CarD-like/TRCF domain TRCF PF03461.15 CQR51122.1 - 1.1e-24 86.6 0.0 3.9e-24 84.9 0.0 2.0 1 0 0 1 1 1 1 TRCF domain UvrB_inter PF17757.1 CQR51122.1 - 2.7e-22 78.7 0.0 9e-22 77.1 0.0 1.9 1 0 0 1 1 1 1 UvrB interaction domain Helicase_C PF00271.31 CQR51122.1 - 5.8e-21 74.9 0.5 1.2e-16 61.0 0.0 2.9 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 CQR51122.1 - 1.6e-17 63.8 2.2 4.2e-17 62.5 0.2 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 CQR51122.1 - 1.1e-09 38.6 0.1 2.6e-09 37.3 0.1 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 CQR51122.1 - 1.3e-05 24.1 0.0 6.3e-05 21.9 0.0 1.9 1 1 0 2 2 2 1 SNF2 family N-terminal domain AAA_22 PF13401.6 CQR51122.1 - 0.017 15.4 0.6 0.22 11.8 0.1 3.2 3 0 0 3 3 3 0 AAA domain SecA_DEAD PF07517.14 CQR51122.1 - 0.031 13.6 0.0 0.093 12.0 0.0 1.8 1 0 0 1 1 1 0 SecA DEAD-like domain DUF99 PF01949.16 CQR51122.1 - 0.15 11.4 0.6 0.6 9.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF99 Rotamase_3 PF13616.6 CQR51124.1 - 1.1e-25 90.4 0.6 1.1e-25 90.4 0.6 2.8 3 0 0 3 3 3 1 PPIC-type PPIASE domain Rotamase PF00639.21 CQR51124.1 - 7.7e-22 78.1 0.1 7.7e-22 78.1 0.1 3.0 2 1 1 3 3 3 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 CQR51124.1 - 3.3e-11 44.1 2.8 3.3e-11 44.1 2.8 2.7 2 1 0 2 2 2 1 PPIC-type PPIASE domain SurA_N_3 PF13624.6 CQR51124.1 - 3.6e-06 26.9 2.6 1.1e-05 25.3 1.1 2.2 1 1 1 2 2 2 1 SurA N-terminal domain SurA_N_2 PF13623.6 CQR51124.1 - 0.012 15.5 1.2 0.042 13.7 0.3 2.2 1 1 1 2 2 2 0 SurA N-terminal domain RPM2 PF08579.11 CQR51124.1 - 0.053 13.9 0.2 0.13 12.6 0.2 1.6 1 0 0 1 1 1 0 Mitochondrial ribonuclease P subunit (RPM2) SpoVT_C PF15714.5 CQR51129.1 - 2e-47 160.3 0.1 2.8e-47 159.9 0.1 1.2 1 0 0 1 1 1 1 Stage V sporulation protein T C-terminal, transcription factor MazE_antitoxin PF04014.18 CQR51129.1 - 8e-11 41.6 2.1 1.4e-10 40.8 2.1 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin GAF_2 PF13185.6 CQR51129.1 - 0.0023 18.2 0.0 0.0031 17.8 0.0 1.2 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 CQR51129.1 - 0.0039 17.8 0.0 0.005 17.5 0.0 1.3 1 0 0 1 1 1 1 GAF domain PrlF_antitoxin PF15937.5 CQR51129.1 - 0.023 15.1 0.0 0.054 13.9 0.0 1.6 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin Polysacc_synt PF01943.17 CQR51132.1 - 1.6e-35 122.8 10.1 1.6e-35 122.8 10.1 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 CQR51132.1 - 1.1e-18 67.7 20.5 1.1e-18 67.7 20.5 4.1 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 CQR51132.1 - 1.7e-07 30.2 26.4 6e-07 28.4 26.4 1.9 1 1 0 1 1 1 1 Lipid II flippase MurJ IMS_HHH PF11798.8 CQR51132.1 - 0.0087 16.3 0.4 0.029 14.7 0.0 2.1 2 0 0 2 2 2 1 IMS family HHH motif AveC_like PF17198.4 CQR51132.1 - 0.061 12.8 1.1 0.18 11.2 0.3 2.1 1 1 0 1 1 1 0 Spirocyclase AveC-like MazG PF03819.17 CQR51134.1 - 5.4e-32 109.8 4.5 3.4e-24 84.8 0.7 2.8 3 0 0 3 3 3 2 MazG nucleotide pyrophosphohydrolase domain TP_methylase PF00590.20 CQR51134.1 - 1.6e-21 77.2 0.2 3.4e-21 76.2 0.0 1.6 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PRA-PH PF01503.17 CQR51134.1 - 1.8e-08 34.7 2.9 0.00015 22.2 0.2 2.8 2 0 0 2 2 2 2 Phosphoribosyl-ATP pyrophosphohydrolase BshC PF10079.9 CQR51134.1 - 0.023 13.5 0.5 0.036 12.8 0.5 1.2 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC FAM92 PF06730.11 CQR51134.1 - 0.061 12.7 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 FAM92 protein Hemerythrin PF01814.23 CQR51134.1 - 0.26 11.9 6.2 3 8.5 1.5 2.5 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain MKRN1_C PF15815.5 CQR51134.1 - 0.34 11.3 2.0 3.6 8.0 0.6 2.6 2 0 0 2 2 2 0 E3 ubiquitin-protein ligase makorin-1, C-terminal Bac_DNA_binding PF00216.21 CQR51135.1 - 2.8e-34 117.2 0.1 3e-34 117.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 CQR51135.1 - 3.2e-09 37.0 0.0 3.3e-09 36.9 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 CQR51135.1 - 0.0069 16.2 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_2 PF18289.1 CQR51135.1 - 0.023 14.8 0.0 0.032 14.4 0.0 1.1 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 S4 PF01479.25 CQR51137.1 - 1.3e-10 40.8 0.4 2.1e-10 40.1 0.4 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 CQR51137.1 - 0.0011 18.7 0.9 0.0018 18.0 0.4 1.6 1 1 0 1 1 1 1 S4 domain CC2D2AN-C2 PF15625.6 CQR51137.1 - 0.057 13.1 0.1 0.071 12.8 0.1 1.1 1 0 0 1 1 1 0 CC2D2A N-terminal C2 domain Ub-Mut7C PF14451.6 CQR51137.1 - 0.058 13.2 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Mut7-C ubiquitin YabP PF07873.11 CQR51139.1 - 9.5e-20 70.2 0.3 1.1e-19 69.9 0.3 1.1 1 0 0 1 1 1 1 YabP family Spore_YabQ PF09578.10 CQR51141.1 - 1.9e-21 76.0 13.3 1.9e-21 76.0 13.3 2.3 2 0 0 2 2 2 2 Spore cortex protein YabQ (Spore_YabQ) DivIC PF04977.15 CQR51143.1 - 6.6e-10 38.6 0.0 9e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Septum formation initiator DUF3328 PF11807.8 CQR51143.1 - 0.079 12.7 0.0 0.093 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) S1 PF00575.23 CQR51144.1 - 5e-20 71.6 4.3 6.9e-20 71.2 4.3 1.2 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.6 CQR51144.1 - 0.083 13.0 0.1 0.26 11.4 0.1 1.9 1 1 0 1 1 1 0 S1 domain SpoIIE PF07228.12 CQR51147.1 - 1.7e-34 119.4 0.0 3e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Cbl_N PF02262.16 CQR51147.1 - 0.033 14.2 0.0 0.091 12.8 0.0 1.7 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 EzrA PF06160.12 CQR51147.1 - 0.19 9.8 0.1 0.28 9.3 0.1 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA VWA PF00092.28 CQR51149.1 - 6.8e-10 39.5 0.0 0.00018 21.8 0.2 2.5 2 1 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 CQR51149.1 - 1.1e-05 26.0 0.0 7.4e-05 23.3 0.0 2.3 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.6 CQR51149.1 - 0.005 16.8 0.2 3 7.8 0.0 2.6 3 0 0 3 3 3 2 von Willebrand factor type A domain Nrf1_DNA-bind PF10491.9 CQR51149.1 - 0.023 14.4 0.1 0.034 13.8 0.1 1.2 1 0 0 1 1 1 0 NLS-binding and DNA-binding and dimerisation domains of Nrf1 DUF1194 PF06707.11 CQR51149.1 - 0.043 13.0 0.6 0.29 10.3 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1194) PSK_trans_fac PF07704.11 CQR51149.1 - 0.095 13.5 1.3 0.48 11.2 0.2 2.5 2 1 0 2 2 2 0 Rv0623-like transcription factor Pkinase PF00069.25 CQR51151.1 - 1.7e-16 60.4 0.0 2.4e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 CQR51151.1 - 5.9e-06 26.4 0.1 0.0023 17.9 0.0 2.4 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 CQR51151.1 - 0.00049 19.5 0.0 0.00071 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase FTA2 PF13095.6 CQR51151.1 - 0.029 14.0 0.0 8.4 6.0 0.0 2.2 2 0 0 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 ATP_bind_3 PF01171.20 CQR51153.1 - 4.2e-53 179.8 0.0 5.7e-53 179.4 0.0 1.2 1 0 0 1 1 1 1 PP-loop family TilS_C PF11734.8 CQR51153.1 - 1.1e-12 47.1 0.0 2e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 TilS substrate C-terminal domain CbiJ PF02571.14 CQR51153.1 - 0.036 13.5 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK tRNA_Me_trans PF03054.16 CQR51153.1 - 0.068 12.0 0.0 0.099 11.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.13 CQR51153.1 - 0.08 12.4 0.0 6.6 6.2 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC TPP_enzyme_N PF02776.18 CQR51153.1 - 0.14 11.8 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAPS_reduct PF01507.19 CQR51153.1 - 0.14 12.2 0.0 0.51 10.4 0.0 2.0 4 0 0 4 4 4 0 Phosphoadenosine phosphosulfate reductase family Pribosyltran PF00156.27 CQR51155.1 - 5.5e-26 91.0 0.2 6.4e-26 90.8 0.2 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 CQR51155.1 - 0.019 14.4 0.1 0.019 14.4 0.1 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 CQR51155.1 - 0.031 14.3 0.1 0.043 13.9 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Peptidase_M41 PF01434.18 CQR51158.1 - 7.2e-74 247.8 0.4 1.2e-73 247.1 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 CQR51158.1 - 1.6e-45 154.8 0.0 3.7e-45 153.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 CQR51158.1 - 8.5e-14 51.1 0.4 2e-13 49.9 0.4 1.6 1 0 0 1 1 1 1 AAA+ lid domain FtsH_ext PF06480.15 CQR51158.1 - 4.6e-07 30.2 0.7 0.00069 20.0 0.2 2.5 2 0 0 2 2 2 2 FtsH Extracellular AAA_5 PF07728.14 CQR51158.1 - 3.6e-05 23.8 0.1 0.00028 20.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 CQR51158.1 - 0.0001 21.7 0.0 0.0002 20.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_16 PF13191.6 CQR51158.1 - 0.00014 22.3 1.1 0.0039 17.6 0.2 2.8 2 1 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 CQR51158.1 - 0.00023 20.9 0.0 0.00081 19.2 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 CQR51158.1 - 0.0025 18.1 0.1 0.065 13.5 0.1 2.5 1 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 CQR51158.1 - 0.0037 17.4 0.0 0.0089 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 CQR51158.1 - 0.0071 16.1 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 CQR51158.1 - 0.0075 15.7 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 CQR51158.1 - 0.033 14.8 0.1 0.14 12.7 0.0 2.2 2 0 0 2 2 1 0 AAA domain AAA_2 PF07724.14 CQR51158.1 - 0.036 14.2 0.0 0.13 12.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 CQR51158.1 - 0.072 12.8 0.0 0.25 11.0 0.0 1.9 1 1 1 2 2 2 0 Sigma-54 interaction domain AAA_28 PF13521.6 CQR51158.1 - 0.072 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 CQR51158.1 - 0.079 13.4 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR51158.1 - 0.088 12.3 0.2 0.37 10.3 0.2 2.0 1 1 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 CQR51158.1 - 0.092 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 CQR51158.1 - 0.1 11.9 0.0 0.39 10.0 0.0 2.0 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.13 CQR51158.1 - 0.11 11.7 0.0 0.31 10.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_14 PF13173.6 CQR51158.1 - 0.12 12.4 0.0 0.39 10.8 0.0 1.9 2 0 0 2 2 1 0 AAA domain YMF19 PF02326.15 CQR51158.1 - 0.12 13.2 0.0 0.45 11.3 0.0 1.9 1 0 0 1 1 1 0 Plant ATP synthase F0 Orf78 PF06024.12 CQR51158.1 - 0.14 12.5 0.0 0.34 11.2 0.0 1.6 1 0 0 1 1 1 0 Orf78 (ac78) NadA PF02445.16 CQR51160.1 - 2.5e-123 411.0 0.6 2.8e-123 410.8 0.6 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein NAD_binding_1 PF00175.21 CQR51160.1 - 0.023 15.3 0.2 11 6.7 0.0 3.1 3 0 0 3 3 3 0 Oxidoreductase NAD-binding domain FAD_binding_2 PF00890.24 CQR51163.1 - 1.5e-97 327.3 3.4 1.8e-97 327.1 3.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 CQR51163.1 - 1.4e-19 70.3 1.5 3.6e-18 65.8 1.5 2.4 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 CQR51163.1 - 3.5e-06 26.5 0.1 0.012 14.8 0.1 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR51163.1 - 8.1e-06 25.7 1.3 7.5e-05 22.5 1.3 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 CQR51163.1 - 0.00043 19.7 0.0 0.46 9.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR51163.1 - 0.0016 17.2 0.0 0.0063 15.3 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 CQR51163.1 - 0.016 14.4 0.2 0.55 9.3 0.1 2.3 2 0 0 2 2 2 0 Glucose inhibited division protein A Orthopox_C10L PF07020.11 CQR51163.1 - 0.038 14.7 0.1 5.1 7.9 0.0 2.5 2 0 0 2 2 2 0 Orthopoxvirus C10L protein QRPTase_C PF01729.19 CQR51166.1 - 3.2e-65 219.0 0.4 4.4e-65 218.6 0.4 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 CQR51166.1 - 5.6e-29 100.0 0.1 9.9e-29 99.3 0.1 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain IMPDH PF00478.25 CQR51166.1 - 6.8e-06 25.3 0.6 1.6e-05 24.1 0.3 1.3 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DUF2254 PF10011.9 CQR51166.1 - 0.001 18.0 0.0 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) TMP-TENI PF02581.17 CQR51166.1 - 0.007 15.7 0.6 0.038 13.3 0.6 1.9 1 1 0 1 1 1 1 Thiamine monophosphate synthase PEP_mutase PF13714.6 CQR51166.1 - 0.017 14.6 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Ribul_P_3_epim PF00834.19 CQR51166.1 - 0.027 13.8 0.2 0.14 11.5 0.1 2.0 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Biotin_lipoyl_2 PF13533.6 CQR51166.1 - 0.065 13.1 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Biotin-lipoyl like Pan_kinase PF03309.14 CQR51168.1 - 6.5e-73 245.0 0.0 7.6e-73 244.8 0.0 1.0 1 0 0 1 1 1 1 Type III pantothenate kinase HSP33 PF01430.19 CQR51171.1 - 7.6e-88 294.4 0.0 8.6e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 Hsp33 protein Rotamase_2 PF13145.6 CQR51173.1 - 7.1e-12 46.2 0.1 7.1e-12 46.2 0.1 2.3 2 1 0 2 2 2 1 PPIC-type PPIASE domain Rotamase PF00639.21 CQR51173.1 - 1.9e-11 44.8 0.1 6e-11 43.2 0.0 1.9 2 0 0 2 2 2 1 PPIC-type PPIASE domain SurA_N_3 PF13624.6 CQR51173.1 - 4.6e-08 33.0 6.6 8.7e-05 22.4 0.6 3.9 2 1 2 4 4 4 3 SurA N-terminal domain Rotamase_3 PF13616.6 CQR51173.1 - 2.4e-07 31.3 0.1 7.8e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 PPIC-type PPIASE domain SurA_N_2 PF13623.6 CQR51173.1 - 5.2e-07 29.6 5.9 0.00096 19.0 0.5 3.6 2 1 2 4 4 4 2 SurA N-terminal domain Trigger_C PF05698.14 CQR51173.1 - 0.00025 21.1 1.6 0.00025 21.1 1.6 2.7 2 1 1 3 3 3 1 Bacterial trigger factor protein (TF) C-terminus SurA_N PF09312.11 CQR51173.1 - 0.023 14.7 4.3 0.8 9.8 0.3 3.1 2 1 1 3 3 3 0 SurA N-terminal domain DUF4148 PF13663.6 CQR51173.1 - 0.23 11.7 2.3 62 3.9 0.2 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4148) DUF1676 PF07898.13 CQR51173.1 - 3.2 7.7 4.9 5.2 7.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1676) PALP PF00291.25 CQR51175.1 - 5.1e-73 246.1 1.9 5.7e-73 245.9 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 CQR51175.1 - 1.6e-05 24.9 0.7 0.0031 17.5 0.0 3.5 3 2 1 4 4 4 1 Zinc-binding dehydrogenase DUF3892 PF13031.6 CQR51175.1 - 0.075 13.7 0.1 0.46 11.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3892) Chorismate_bind PF00425.18 CQR51178.1 - 2.3e-96 322.3 0.0 3e-96 321.9 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 CQR51178.1 - 8.5e-24 84.4 0.0 1.6e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region SAM_1 PF00536.30 CQR51178.1 - 0.097 13.1 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) GATase PF00117.28 CQR51180.1 - 9e-58 195.2 0.1 1e-57 195.0 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 CQR51180.1 - 1.8e-10 41.0 0.4 4e-10 39.8 0.4 1.6 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.19 CQR51182.1 - 2.2e-49 168.3 0.0 2.6e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Pterin_bind PF00809.22 CQR51184.1 - 6.7e-82 274.8 0.0 7.7e-82 274.6 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme FolB PF02152.18 CQR51187.1 - 1e-34 119.4 0.1 1.1e-34 119.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase HPPK PF01288.20 CQR51189.1 - 1.7e-38 131.6 0.0 2.5e-38 131.1 0.0 1.2 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HTH_3 PF01381.22 CQR51192.1 - 3.8e-13 49.3 0.1 4.2e-13 49.1 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR51192.1 - 6.8e-13 48.8 0.2 7.6e-13 48.6 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR51192.1 - 8.4e-12 44.9 0.0 1e-11 44.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR51192.1 - 2.8e-06 27.7 0.0 2.9e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 CQR51192.1 - 4.7e-05 23.2 0.0 0.00015 21.6 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 CQR51192.1 - 0.0011 18.4 0.1 0.045 13.3 0.1 2.3 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 CQR51192.1 - 0.013 15.0 0.0 0.075 12.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 CQR51192.1 - 0.052 13.4 0.1 0.54 10.1 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_37 PF13744.6 CQR51192.1 - 0.072 13.1 0.0 0.085 12.8 0.0 1.2 1 1 0 1 1 1 0 Helix-turn-helix domain Dus PF01207.17 CQR51194.1 - 7.5e-105 350.4 0.3 8.9e-105 350.2 0.3 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 CQR51194.1 - 0.00093 18.7 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase MR_MLE_C PF13378.6 CQR51194.1 - 0.0013 18.4 0.1 0.0017 17.9 0.1 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like DHO_dh PF01180.21 CQR51194.1 - 0.0016 17.7 0.0 0.55 9.4 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase NanE PF04131.14 CQR51194.1 - 0.0061 15.8 0.2 0.021 14.0 0.0 1.9 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase SOR_SNZ PF01680.17 CQR51194.1 - 0.0093 15.8 0.4 4.1 7.1 0.0 2.5 1 1 1 2 2 2 2 SOR/SNZ family NMO PF03060.15 CQR51194.1 - 0.01 15.2 3.1 0.052 12.9 1.0 2.8 2 1 0 2 2 2 0 Nitronate monooxygenase His_biosynth PF00977.21 CQR51194.1 - 0.025 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein Oxidored_FMN PF00724.20 CQR51194.1 - 0.067 12.4 0.0 0.72 9.1 0.0 2.3 2 1 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family G3P_antiterm PF04309.12 CQR51194.1 - 0.087 12.2 0.2 1.7 8.1 0.0 2.7 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator GreA_GreB_N PF03449.15 CQR51196.1 - 2.8e-28 97.9 2.3 4e-28 97.4 2.3 1.2 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 CQR51196.1 - 5.6e-26 90.2 2.9 9.3e-26 89.5 2.9 1.3 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term tRNA-synt_2 PF00152.20 CQR51199.1 - 2.9e-84 282.8 1.2 3.6e-84 282.5 1.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 CQR51199.1 - 3.8e-16 58.8 0.2 7.3e-16 57.9 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 CQR51199.1 - 7.1e-06 25.7 0.3 0.018 14.5 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) IMPDH PF00478.25 CQR51202.1 - 5.1e-165 548.6 5.1 6.4e-165 548.3 5.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 CQR51202.1 - 3.4e-17 62.6 1.2 1.6e-07 31.7 0.1 3.0 3 0 0 3 3 3 2 CBS domain NMO PF03060.15 CQR51202.1 - 5.8e-12 45.7 8.7 5.9e-07 29.2 4.9 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 CQR51202.1 - 2.2e-05 23.6 10.7 4.1e-05 22.8 6.4 3.2 4 1 0 4 4 4 1 FMN-dependent dehydrogenase DHO_dh PF01180.21 CQR51202.1 - 3.9e-05 23.0 6.8 0.048 12.9 2.8 2.6 1 1 1 2 2 2 2 Dihydroorotate dehydrogenase His_biosynth PF00977.21 CQR51202.1 - 0.0011 18.5 2.9 57 3.1 0.2 2.3 1 1 0 1 1 1 0 Histidine biosynthesis protein Aldolase PF01081.19 CQR51202.1 - 0.0027 17.2 1.4 0.0098 15.3 0.4 2.2 1 1 0 2 2 2 1 KDPG and KHG aldolase ThiG PF05690.14 CQR51202.1 - 0.0051 16.2 5.3 0.011 15.1 1.4 2.9 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 CQR51202.1 - 0.011 15.1 3.7 0.03 13.7 3.7 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase Glu_synthase PF01645.17 CQR51202.1 - 0.034 13.3 5.3 0.082 12.0 5.3 1.7 1 1 0 1 1 1 0 Conserved region in glutamate synthase QRPTase_C PF01729.19 CQR51202.1 - 0.055 13.2 0.8 0.24 11.2 0.0 2.3 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain DeoC PF01791.9 CQR51202.1 - 0.072 12.7 0.7 0.21 11.2 0.7 1.7 1 0 0 1 1 1 0 DeoC/LacD family aldolase PEP_mutase PF13714.6 CQR51202.1 - 0.073 12.5 1.1 0.16 11.4 0.2 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase G3P_antiterm PF04309.12 CQR51202.1 - 0.1 12.0 0.1 0.1 12.0 0.1 2.9 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Peptidase_S11 PF00768.20 CQR51204.1 - 1e-68 231.4 2.8 1.9e-68 230.5 2.8 1.4 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 CQR51204.1 - 1.8e-13 50.5 0.9 2.8e-13 49.9 0.9 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family PBP5_C PF07943.13 CQR51204.1 - 6.7e-10 39.1 5.2 1.5e-09 37.9 5.2 1.6 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase PF00144.24 CQR51204.1 - 0.014 14.7 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase SOR_SNZ PF01680.17 CQR51207.1 - 8.9e-107 355.5 3.9 1.2e-106 355.1 3.9 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 CQR51207.1 - 8.2e-09 35.1 2.6 3e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 CQR51207.1 - 0.001 18.3 0.2 0.048 12.8 0.0 2.8 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase Dus PF01207.17 CQR51207.1 - 0.0017 17.5 0.5 0.56 9.3 0.0 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 CQR51207.1 - 0.0022 17.4 5.3 0.014 14.8 0.1 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 CQR51207.1 - 0.0023 17.2 0.6 0.059 12.5 0.0 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase TetR_C_27 PF17935.1 CQR51207.1 - 0.0025 17.9 0.0 0.0057 16.7 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain His_biosynth PF00977.21 CQR51207.1 - 0.015 14.8 0.6 0.23 10.9 0.0 2.4 2 1 0 2 2 2 0 Histidine biosynthesis protein SNO PF01174.19 CQR51209.1 - 6.3e-68 228.3 0.0 7.2e-68 228.1 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 CQR51209.1 - 3e-09 36.7 0.1 4e-09 36.3 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 CQR51209.1 - 1.4e-05 24.8 0.1 2.1e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 CQR51209.1 - 2e-05 24.5 0.3 4.7e-05 23.2 0.3 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 CQR51209.1 - 3.7e-05 23.6 0.1 8.4e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 CQR51209.1 - 0.013 15.3 0.2 0.36 10.6 0.1 2.6 2 1 0 2 2 2 0 Peptidase C26 tRNA-synt_2b PF00587.25 CQR51211.1 - 3.5e-33 115.1 0.0 6e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 CQR51211.1 - 4.6e-29 100.8 3.2 9.7e-29 99.8 3.2 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF4201 PF13870.6 CQR51211.1 - 0.011 15.4 1.5 0.037 13.8 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) SHE3 PF17078.5 CQR51211.1 - 0.063 13.0 1.1 0.12 12.0 1.1 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF4094 PF13334.6 CQR51211.1 - 0.066 13.6 0.4 0.15 12.5 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) Laminin_I PF06008.14 CQR51211.1 - 0.089 12.5 2.0 0.11 12.2 0.3 1.8 2 0 0 2 2 2 0 Laminin Domain I PLAC9 PF15205.6 CQR51211.1 - 0.13 12.6 0.0 0.36 11.3 0.0 1.6 1 0 0 1 1 1 0 Placenta-specific protein 9 SIKE PF05769.11 CQR51211.1 - 0.71 9.8 3.2 0.36 10.7 0.9 1.8 2 1 0 2 2 2 0 SIKE family SspP PF08179.12 CQR51217.1 - 1.6e-08 34.9 4.6 1.6e-08 34.9 4.6 1.3 1 1 0 1 1 1 1 Small acid-soluble spore protein P family Ntox37 PF15535.6 CQR51217.1 - 0.1 13.0 3.3 0.12 12.9 3.3 1.1 1 0 0 1 1 1 0 Bacterial toxin 37 DUF166 PF02593.14 CQR51219.1 - 0.18 11.3 1.3 0.28 10.7 0.6 1.6 2 0 0 2 2 2 0 Domain of unknown function Acetyltransf_3 PF13302.7 CQR51221.1 - 8.1e-20 71.9 0.0 1e-19 71.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR51221.1 - 2.9e-12 47.0 0.0 3.4e-12 46.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR51221.1 - 1.2e-07 31.9 0.1 1.6e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PHB_acc_N PF07879.11 CQR51221.1 - 0.024 14.7 0.1 0.16 12.1 0.0 2.1 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain Acetyltransf_8 PF13523.6 CQR51221.1 - 0.026 14.2 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MafB19-deam PF14437.6 CQR51223.1 - 4.4e-38 130.1 0.0 5.1e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 CQR51223.1 - 7.3e-29 99.6 0.0 9.7e-29 99.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC3 PF18771.1 CQR51223.1 - 0.0013 18.8 0.0 0.0089 16.1 0.0 2.2 1 1 2 3 3 3 1 APOBEC3 Bd3614-deam PF14439.6 CQR51223.1 - 0.0049 16.9 0.9 0.019 15.1 0.6 2.1 1 1 2 3 3 3 1 Bd3614-like deaminase SNAD4 PF18750.1 CQR51223.1 - 0.0051 16.9 0.0 0.018 15.1 0.0 1.8 1 1 1 2 2 2 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 CQR51223.1 - 0.02 14.9 0.0 0.052 13.6 0.0 1.6 1 1 1 2 2 2 0 APOBEC2 NAD1 PF18778.1 CQR51223.1 - 0.052 13.6 0.0 0.14 12.2 0.0 1.7 1 1 1 2 2 2 0 Novel AID APOBEC clade 1 NAD2 PF18782.1 CQR51223.1 - 0.086 12.9 0.0 0.25 11.4 0.0 1.7 1 1 1 2 2 2 0 Novel AID APOBEC clade 2 APOBEC_N PF08210.11 CQR51223.1 - 0.11 12.3 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 APOBEC-like N-terminal domain HATPase_c PF02518.26 CQR51225.1 - 6.9e-21 74.9 0.3 6.9e-21 74.9 0.3 1.8 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 CQR51225.1 - 5.4e-13 49.2 0.0 9.7e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 CQR51225.1 - 8.3e-12 45.0 0.4 8.3e-12 45.0 0.4 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR51225.1 - 4e-11 43.1 0.0 1.4e-10 41.4 0.0 2.0 1 0 0 1 1 1 1 HAMP domain PAS PF00989.25 CQR51225.1 - 4.4e-11 42.8 0.0 1e-10 41.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 CQR51225.1 - 1.1e-09 38.5 0.0 4.5e-09 36.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 CQR51225.1 - 3.4e-07 30.1 0.0 7.5e-06 25.8 0.0 3.2 4 0 0 4 4 4 1 PAS domain PAS_3 PF08447.12 CQR51225.1 - 6.8e-05 23.1 0.0 0.00024 21.3 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 CQR51225.1 - 0.00012 21.9 0.4 0.001 18.9 0.1 2.3 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 CQR51225.1 - 0.001 19.0 0.0 0.0029 17.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 CQR51225.1 - 0.014 15.5 0.3 0.59 10.3 0.0 3.6 3 1 0 3 3 3 0 PAS fold HATPase_c_3 PF13589.6 CQR51225.1 - 0.021 14.7 0.0 0.07 13.0 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1664 PF07889.12 CQR51225.1 - 0.27 11.3 1.3 0.59 10.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Sigma_reg_N PF13800.6 CQR51225.1 - 7 7.0 8.0 3.1 8.1 0.8 3.1 3 0 0 3 3 3 0 Sigma factor regulator N-terminal PseudoU_synth_2 PF00849.22 CQR51228.1 - 2.5e-16 60.2 0.1 4.2e-15 56.2 0.1 2.1 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 CQR51228.1 - 3e-12 46.1 0.0 2.4e-11 43.1 0.0 2.4 1 1 1 2 2 2 1 S4 domain MotB_plug PF13677.6 CQR51230.1 - 2.6e-22 78.1 1.7 6.6e-22 76.9 1.7 1.7 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 CQR51230.1 - 2.9e-16 59.6 0.1 3.8e-15 56.0 0.0 2.2 2 0 0 2 2 2 1 OmpA family ExbD PF02472.16 CQR51230.1 - 0.2 11.8 4.1 2.6 8.2 4.1 2.3 1 1 0 1 1 1 0 Biopolymer transport protein ExbD/TolR DUF4252 PF14060.6 CQR51230.1 - 0.29 11.0 6.2 0.93 9.4 5.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4252) YajC PF02699.15 CQR51230.1 - 0.59 10.1 0.0 0.59 10.1 0.0 2.0 2 0 0 2 2 2 0 Preprotein translocase subunit MotA_ExbB PF01618.16 CQR51233.1 - 7.2e-29 100.1 0.2 7.2e-29 100.1 0.2 2.3 3 0 0 3 3 3 1 MotA/TolQ/ExbB proton channel family BCLP PF12304.8 CQR51233.1 - 0.082 12.4 5.5 0.99 8.9 0.2 2.7 2 1 1 3 3 3 0 Beta-casein like protein Phage_holin_3_6 PF07332.11 CQR51233.1 - 6.6 6.8 9.8 4 7.5 0.4 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III MtrC PF04211.13 CQR51233.1 - 8 5.4 12.1 0.35 9.9 2.6 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C Pterin_4a PF01329.19 CQR51236.1 - 1.8e-21 76.1 0.3 2e-21 75.9 0.3 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Cytochrome_CBB3 PF13442.6 CQR51238.1 - 7.3e-16 58.2 0.1 1.1e-15 57.7 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 CQR51238.1 - 6.4e-08 33.6 0.7 3.4e-06 28.1 0.7 2.2 1 1 0 1 1 1 1 Cytochrome c Acetyltransf_1 PF00583.25 CQR51240.1 - 1.2e-08 35.2 0.0 1.4e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 CQR51240.1 - 1.9e-05 25.4 0.0 2.5e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR51240.1 - 0.00011 22.1 0.0 0.00014 21.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR51240.1 - 0.00052 19.7 0.0 0.0017 18.0 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR51240.1 - 0.0023 18.3 0.0 0.0033 17.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR51240.1 - 0.077 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein NLPC_P60 PF00877.19 CQR51243.1 - 2.4e-31 107.9 0.3 3e-31 107.5 0.3 1.1 1 0 0 1 1 1 1 NlpC/P60 family CHAP PF05257.16 CQR51243.1 - 0.00026 21.5 0.0 0.00044 20.8 0.0 1.4 1 0 0 1 1 1 1 CHAP domain LRAT PF04970.13 CQR51243.1 - 0.0021 18.3 0.0 0.0033 17.7 0.0 1.4 1 0 0 1 1 1 1 Lecithin retinol acyltransferase Peptidase_C92 PF05708.12 CQR51243.1 - 0.011 15.8 0.0 0.067 13.3 0.0 2.0 2 1 0 2 2 2 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Amidase_6 PF12671.7 CQR51243.1 - 0.027 14.6 0.1 0.032 14.3 0.1 1.3 1 0 0 1 1 1 0 Putative amidase domain NLPC_P60 PF00877.19 CQR51246.1 - 1e-32 112.3 0.1 1.3e-32 111.9 0.1 1.1 1 0 0 1 1 1 1 NlpC/P60 family CHAP PF05257.16 CQR51246.1 - 0.0039 17.7 0.1 0.0093 16.5 0.1 1.9 1 1 0 1 1 1 1 CHAP domain Peptidase_C92 PF05708.12 CQR51246.1 - 0.009 16.1 0.0 0.27 11.3 0.0 2.3 2 1 0 2 2 2 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DUF1175 PF06672.11 CQR51246.1 - 0.14 11.8 0.0 2 8.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1175) Peptidase_M1 PF01433.20 CQR51249.1 - 2.8e-17 63.0 0.0 5e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain CBM_2 PF00553.19 CQR51249.1 - 0.1 12.9 0.1 0.33 11.3 0.1 1.8 1 0 0 1 1 1 0 Cellulose binding domain YwhD PF08741.10 CQR51251.1 - 5.2e-72 240.8 0.1 5.9e-72 240.6 0.1 1.0 1 0 0 1 1 1 1 YwhD family Sigma70_r4 PF04545.16 CQR51253.1 - 2.5e-05 23.7 0.6 9.6e-05 21.8 0.2 2.1 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.6 CQR51253.1 - 7.2e-05 22.7 0.1 0.00013 21.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MazE_antitoxin PF04014.18 CQR51253.1 - 9.7e-05 22.2 0.8 0.00017 21.4 0.4 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin HTH_24 PF13412.6 CQR51253.1 - 0.00011 21.6 0.0 0.00027 20.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 CQR51253.1 - 0.0021 17.9 0.0 0.0035 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_3 PF01381.22 CQR51253.1 - 0.0023 17.9 0.2 0.0074 16.3 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix Fe_dep_repress PF01325.19 CQR51253.1 - 0.0057 16.8 0.0 0.012 15.8 0.0 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 CQR51253.1 - 0.0071 16.2 0.0 0.013 15.3 0.0 1.5 1 1 0 1 1 1 1 MarR family OrfB_Zn_ribbon PF07282.11 CQR51253.1 - 0.019 14.9 0.4 0.031 14.2 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_28 PF13518.6 CQR51253.1 - 0.024 14.8 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 CQR51253.1 - 0.025 14.5 0.0 0.063 13.2 0.0 1.7 1 1 0 1 1 1 0 MarR family HHH_3 PF12836.7 CQR51253.1 - 0.025 14.8 0.1 0.042 14.1 0.1 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_26 PF13443.6 CQR51253.1 - 0.026 15.0 0.1 0.049 14.1 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 CQR51253.1 - 0.028 14.5 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF4428 PF14471.6 CQR51253.1 - 0.033 14.1 0.0 0.065 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) HTH_Crp_2 PF13545.6 CQR51253.1 - 0.11 12.5 0.2 0.29 11.1 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Pur_DNA_glyco PF02245.16 CQR51256.1 - 3.3e-58 196.0 0.0 3.8e-58 195.8 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Transgly PF00912.22 CQR51257.1 - 3.1e-67 225.5 0.3 4.7e-67 224.9 0.3 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 CQR51257.1 - 6.4e-34 117.5 4.1 4.9e-33 114.6 4.1 2.2 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain PSII_BNR PF14870.6 CQR51260.1 - 2.9e-11 43.2 6.6 5.7e-05 22.5 0.2 4.1 1 1 3 4 4 4 4 Photosynthesis system II assembly factor YCF48 Sortilin-Vps10 PF15902.5 CQR51260.1 - 1.2e-06 27.6 8.3 0.001 18.0 0.6 4.0 2 2 1 4 4 4 3 Sortilin, neurotensin receptor 3, BNR PF02012.20 CQR51260.1 - 1.5e-06 27.4 28.3 0.088 12.9 0.2 7.0 7 0 0 7 7 7 5 BNR/Asp-box repeat BNR_2 PF13088.6 CQR51260.1 - 5.1e-06 26.0 0.8 0.00027 20.3 0.1 3.1 2 2 0 2 2 2 1 BNR repeat-like domain PQQ_2 PF13360.6 CQR51260.1 - 0.031 13.9 6.3 0.029 14.0 1.2 2.3 2 0 0 2 2 2 0 PQQ-like domain RVT_1 PF00078.27 CQR51262.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR51262.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR51262.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase CN_hydrolase PF00795.22 CQR51264.1 - 1.5e-28 99.8 0.0 1.8e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Acetyltransf_1 PF00583.25 CQR51267.1 - 2.2e-12 47.2 0.0 4.4e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR51267.1 - 2.7e-05 24.1 0.0 4.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR51267.1 - 3.1e-05 24.1 0.0 0.13 12.4 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR51267.1 - 0.00016 22.0 0.0 0.00025 21.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR51267.1 - 0.00056 19.8 0.0 0.00096 19.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR51267.1 - 0.1 12.7 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF1934 PF09148.10 CQR51270.1 - 3.9e-27 94.8 0.0 4.6e-27 94.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1934) DALR_1 PF05746.15 CQR51271.1 - 8.7e-33 113.0 0.3 1.8e-32 112.0 0.3 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1d PF00750.19 CQR51271.1 - 1.8e-29 102.8 0.1 2.6e-29 102.3 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) Arg_tRNA_synt_N PF03485.16 CQR51271.1 - 5.7e-26 90.9 0.5 1.5e-25 89.6 0.5 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.11 CQR51271.1 - 5.3e-07 28.7 0.8 0.00055 18.8 0.1 3.8 3 1 1 4 4 4 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 CQR51271.1 - 7.7e-07 28.7 0.0 0.013 14.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 CQR51271.1 - 1.4e-06 26.9 0.8 0.0033 15.7 0.1 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 CQR51271.1 - 4.9e-05 22.4 0.0 0.0032 16.4 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1b PF00579.25 CQR51271.1 - 0.036 13.4 0.0 1.5 8.1 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) tRNA-synt_1c PF00749.21 CQR51271.1 - 0.068 12.0 0.3 3.9 6.3 0.2 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain Peptidase_S8 PF00082.22 CQR51273.1 - 3.4e-48 164.4 0.1 1.2e-47 162.7 0.1 1.7 1 1 0 1 1 1 1 Subtilase family HARE-HTH PF05066.13 CQR51276.1 - 3.2e-08 33.8 0.0 4.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain CTP_synth_N PF06418.14 CQR51279.1 - 5.5e-132 439.0 1.0 6.9e-132 438.6 1.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 CQR51279.1 - 6.9e-59 198.8 0.0 1.3e-58 198.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 CQR51279.1 - 3.7e-08 33.4 0.0 6.2e-07 29.4 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 CQR51279.1 - 0.0084 16.2 0.0 0.014 15.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Response_reg PF00072.24 CQR51284.1 - 4.4e-30 104.1 0.8 5e-30 103.9 0.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain F_bP_aldolase PF01116.20 CQR51285.1 - 2e-99 332.6 0.5 2.2e-99 332.5 0.5 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II ThiG PF05690.14 CQR51285.1 - 0.00042 19.7 0.2 0.018 14.4 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG UvrA_inter PF17760.1 CQR51285.1 - 0.074 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 UvrA interaction domain EPSP_synthase PF00275.20 CQR51288.1 - 1.1e-89 301.1 1.8 1.3e-89 300.8 1.8 1.1 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) bPH_5 PF10882.8 CQR51288.1 - 0.13 12.4 0.0 16 5.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial PH domain Rho_RNA_bind PF07497.12 CQR51290.1 - 7.6e-32 109.0 0.0 1.6e-31 107.9 0.0 1.6 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain ATP-synt_ab PF00006.25 CQR51290.1 - 1.2e-19 70.8 0.0 1.8e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_N PF07498.12 CQR51290.1 - 4.5e-16 58.5 0.6 1e-15 57.3 0.6 1.7 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain AAA PF00004.29 CQR51290.1 - 0.001 19.5 0.0 0.0068 16.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) OB_RNB PF08206.11 CQR51290.1 - 0.0059 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease B OB domain ATPase_2 PF01637.18 CQR51290.1 - 0.0072 16.3 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 CQR51290.1 - 0.019 15.2 0.0 0.053 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR51290.1 - 0.027 14.0 0.1 0.073 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR51290.1 - 0.06 13.7 0.3 0.73 10.2 0.3 2.3 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 CQR51290.1 - 0.14 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Radical_SAM PF04055.21 CQR51293.1 - 2e-10 41.3 0.0 2.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Ribosomal_L31 PF01197.18 CQR51295.1 - 3e-29 101.1 0.6 3.2e-29 100.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L31 DNA_pol3_delta2 PF13177.6 CQR51297.1 - 7e-49 165.7 0.0 1.3e-48 164.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 CQR51297.1 - 3.5e-14 53.4 0.0 6.7e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_gamma3 PF12169.8 CQR51297.1 - 4.1e-14 52.7 0.2 1.2e-13 51.2 0.2 1.8 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III RuvB_N PF05496.12 CQR51297.1 - 1.5e-07 31.3 0.2 5.3e-06 26.3 0.0 2.3 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 CQR51297.1 - 7.9e-07 29.4 0.0 3.9e-06 27.2 0.0 2.2 3 0 0 3 3 1 1 AAA domain TIP49 PF06068.13 CQR51297.1 - 9.4e-07 28.3 0.0 0.02 14.1 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_30 PF13604.6 CQR51297.1 - 1.9e-06 27.8 0.0 1e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 CQR51297.1 - 3.9e-05 23.7 0.2 0.001 19.1 0.2 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR51297.1 - 4.1e-05 24.0 0.2 0.00047 20.6 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain ResIII PF04851.15 CQR51297.1 - 0.00021 21.3 0.1 0.57 10.2 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_assoc_2 PF16193.5 CQR51297.1 - 0.00071 19.9 0.0 0.0029 17.9 0.0 2.1 1 1 0 1 1 1 1 AAA C-terminal domain AAA_7 PF12775.7 CQR51297.1 - 0.00092 18.8 0.0 0.85 9.1 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_19 PF13245.6 CQR51297.1 - 0.0015 18.9 0.1 0.024 15.0 0.1 2.5 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR51297.1 - 0.0021 18.0 0.0 0.0042 17.0 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 CQR51297.1 - 0.005 16.9 0.0 0.018 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.14 CQR51297.1 - 0.0076 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase DNA_pol3_delta PF06144.13 CQR51297.1 - 0.02 14.7 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 CQR51297.1 - 0.049 13.0 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 CQR51297.1 - 0.056 13.1 0.0 1.4 8.6 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 CQR51297.1 - 0.064 13.8 0.0 0.3 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 CQR51297.1 - 0.078 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein B12-binding_2 PF02607.17 CQR51297.1 - 0.079 13.4 0.0 0.52 10.8 0.0 2.5 1 0 0 1 1 1 0 B12 binding domain AAA_24 PF13479.6 CQR51297.1 - 0.081 12.6 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 CQR51297.1 - 0.12 11.5 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 CQR51297.1 - 0.17 12.2 0.0 0.48 10.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase SlyX PF04102.12 CQR51297.1 - 5.8 7.6 6.7 12 6.6 0.1 3.9 4 0 0 4 4 3 0 SlyX YbaB_DNA_bd PF02575.16 CQR51299.1 - 1.9e-35 121.0 5.4 2.2e-35 120.8 5.4 1.1 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family SIS_2 PF13580.6 CQR51299.1 - 0.13 12.3 0.1 0.15 12.1 0.1 1.1 1 0 0 1 1 1 0 SIS domain DNA_Packaging PF11053.8 CQR51299.1 - 1.6 8.6 7.6 3.2 7.6 3.6 2.0 1 1 1 2 2 2 0 Terminase DNA packaging enzyme Toprim_4 PF13662.6 CQR51301.1 - 2.4e-23 82.4 0.0 3.8e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Toprim domain RecR PF02132.15 CQR51301.1 - 1.5e-16 59.6 5.0 2.9e-16 58.7 5.0 1.5 1 0 0 1 1 1 1 RecR protein Toprim PF01751.22 CQR51301.1 - 1.7e-06 28.2 0.1 4.1e-06 27.0 0.0 1.6 2 0 0 2 2 2 1 Toprim domain HHH_5 PF14520.6 CQR51301.1 - 0.036 14.7 0.0 0.2 12.3 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_8 PF14716.6 CQR51301.1 - 0.053 13.9 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH PF00633.23 CQR51301.1 - 0.14 12.1 1.2 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2508 PF10704.9 CQR51304.1 - 0.0013 18.8 0.9 0.0016 18.6 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2508) BofA PF07441.11 CQR51305.1 - 1.5e-13 50.7 15.2 2e-13 50.3 15.2 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF2784 PF10861.8 CQR51305.1 - 0.26 11.3 5.5 0.27 11.3 5.1 1.3 1 1 0 1 1 1 0 Protein of Unknown function (DUF2784) Ndc1_Nup PF09531.10 CQR51305.1 - 3.9 6.0 4.6 3.7 6.1 4.6 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup RVT_1 PF00078.27 CQR51313.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR51313.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR51313.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase Y2_Tnp PF04986.13 CQR51314.1 - 2.7e-37 128.6 1.8 2.7e-37 128.6 1.8 2.1 2 0 0 2 2 2 1 Putative transposase Zn_Tnp_IS91 PF14319.6 CQR51314.1 - 5.6e-29 100.0 7.4 9.4e-29 99.3 3.7 2.5 2 0 0 2 2 2 1 Transposase zinc-binding domain MobA_MobL PF03389.15 CQR51314.1 - 0.016 14.9 0.2 0.042 13.6 0.1 1.7 1 1 0 1 1 1 0 MobA/MobL family DUF5638 PF18688.1 CQR51314.1 - 0.054 13.8 0.4 0.12 12.7 0.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5638) KH_9 PF17904.1 CQR51314.1 - 0.13 12.7 0.1 0.31 11.4 0.1 1.6 1 0 0 1 1 1 0 FMRP KH0 domain WW PF00397.26 CQR51314.1 - 3.4 7.8 7.9 0.13 12.3 0.7 2.4 3 0 0 3 3 3 0 WW domain DNA_ligase_ZBD PF03119.16 CQR51316.1 - 0.0047 16.9 0.2 0.0047 16.9 0.2 1.8 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 CQR51316.1 - 0.0066 15.9 2.1 1.6 8.3 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-RRN7 PF11781.8 CQR51316.1 - 0.01 15.5 2.1 0.62 9.8 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RNA_POL_M_15KD PF02150.16 CQR51316.1 - 0.091 12.7 4.5 8.8 6.3 0.1 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 CQR51316.1 - 0.11 12.3 1.6 3 7.6 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 CQR51316.1 - 0.13 12.2 0.7 9.1 6.3 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 CQR51316.1 - 0.16 12.1 3.6 2.8 8.1 3.6 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 CQR51316.1 - 0.19 11.6 1.9 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf_C2H2_ZHX PF18387.1 CQR51316.1 - 3 7.6 6.6 8.1 6.2 0.5 2.7 2 1 1 3 3 3 0 Zinc-fingers and homeoboxes C2H2 finger domain HTH_30 PF13556.6 CQR51318.1 - 7.3e-20 70.5 0.3 2.5e-19 68.8 0.1 2.0 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 CQR51318.1 - 0.0055 16.5 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family DUF3524 PF12038.8 CQR51318.1 - 0.019 14.8 0.1 10 5.9 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF3524) ABC_tran PF00005.27 CQR51320.1 - 3.9e-29 101.9 0.0 7.2e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 CQR51320.1 - 2.9e-15 56.8 0.1 9.4e-15 55.2 0.1 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 CQR51320.1 - 3.9e-07 30.2 0.0 0.023 14.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR51320.1 - 2e-06 27.4 0.0 3e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 CQR51320.1 - 6.5e-06 26.6 0.3 1.7e-05 25.3 0.1 1.9 2 0 0 2 2 1 1 CysA C-terminal regulatory domain Rad17 PF03215.15 CQR51320.1 - 1.1e-05 25.4 0.0 1.7e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 CQR51320.1 - 0.00016 22.0 0.0 0.00031 21.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.10 CQR51320.1 - 0.00071 19.7 0.0 0.0022 18.1 0.0 1.9 2 0 0 2 2 1 1 TOBE domain AAA_16 PF13191.6 CQR51320.1 - 0.0017 18.8 0.1 0.0045 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR51320.1 - 0.0019 18.1 0.0 0.0084 16.0 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase TOBE PF03459.17 CQR51320.1 - 0.0027 18.0 0.0 0.0084 16.4 0.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.6 CQR51320.1 - 0.0028 17.4 0.0 0.0089 15.8 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 CQR51320.1 - 0.022 15.3 0.4 0.074 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 CQR51320.1 - 0.031 14.0 0.0 0.083 12.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 CQR51320.1 - 0.034 14.7 0.0 0.09 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 CQR51320.1 - 0.034 14.6 0.0 0.13 12.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 CQR51320.1 - 0.035 14.0 0.0 0.058 13.3 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 CQR51320.1 - 0.047 13.4 0.0 0.079 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 CQR51320.1 - 0.055 13.2 0.0 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 Cytidylate kinase AAA_28 PF13521.6 CQR51320.1 - 0.14 12.4 0.0 0.34 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR51320.1 - 0.15 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 CQR51320.1 - 0.16 12.3 0.0 0.45 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 CQR51320.1 - 0.17 12.0 0.2 0.38 10.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR51320.1 - 0.21 11.5 0.2 1.2 9.0 0.1 2.0 2 0 0 2 2 2 0 NACHT domain Hpr_kinase_C PF07475.12 CQR51322.1 - 9.7e-77 256.3 0.2 1.3e-76 255.9 0.2 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain Hpr_kinase_N PF02603.16 CQR51322.1 - 7.8e-42 142.2 0.0 1.2e-41 141.6 0.0 1.3 1 0 0 1 1 1 1 HPr Serine kinase N terminus DRTGG PF07085.12 CQR51322.1 - 0.0002 21.1 0.0 0.00049 19.9 0.0 1.6 1 0 0 1 1 1 1 DRTGG domain PucR PF07905.11 CQR51322.1 - 0.00029 21.1 0.0 0.0011 19.3 0.0 1.9 1 1 0 1 1 1 1 Purine catabolism regulatory protein-like family AAA_28 PF13521.6 CQR51322.1 - 0.026 14.8 0.1 0.055 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR51322.1 - 0.04 14.3 0.1 0.24 11.8 0.1 2.0 1 1 1 2 2 2 0 AAA ATPase domain DUF1233 PF06806.12 CQR51322.1 - 0.11 12.1 0.0 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Putative excisionase (DUF1233) LGT PF01790.18 CQR51324.1 - 9.5e-68 228.0 13.7 1.2e-67 227.7 13.7 1.1 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase Cation_efflux PF01545.21 CQR51324.1 - 0.02 14.6 1.1 0.21 11.3 0.3 2.3 2 0 0 2 2 2 0 Cation efflux family HAD_2 PF13419.6 CQR51326.1 - 3.1e-49 167.5 0.0 3.7e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR51326.1 - 8.2e-17 62.2 0.3 6.6e-14 52.7 0.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR51326.1 - 4.6e-11 42.6 0.1 7e-11 42.0 0.1 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR51326.1 - 2.2e-09 38.0 0.0 2.9e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 CQR51326.1 - 0.0002 21.2 0.0 0.00096 19.0 0.0 1.9 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.12 CQR51326.1 - 0.00035 20.4 0.1 0.85 9.3 0.1 2.7 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 CQR51326.1 - 0.0061 16.7 0.0 3 8.0 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 CQR51326.1 - 0.059 13.2 0.0 0.79 9.5 0.0 2.1 2 0 0 2 2 2 0 Acid Phosphatase Hexapep_2 PF14602.6 CQR51328.1 - 4.8e-14 51.8 10.4 1.2e-11 44.1 5.8 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 CQR51328.1 - 1.2e-13 50.2 11.6 5.1e-11 41.8 5.5 2.7 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 CQR51328.1 - 0.19 9.8 0.2 0.24 9.5 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Acyl_transf_3 PF01757.22 CQR51330.1 - 2.6e-29 102.4 50.1 3.2e-29 102.1 50.1 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.12 CQR51330.1 - 4.5e-05 23.1 3.4 4.5e-05 23.1 3.4 3.2 1 1 0 3 3 3 1 Protein of unknown function (DUF1624) FGGY_N PF00370.21 CQR51332.1 - 2.4e-69 233.6 0.0 3.1e-69 233.3 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 CQR51332.1 - 2.9e-37 128.3 0.0 4.5e-37 127.7 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 CQR51332.1 - 1.1e-06 28.4 0.0 6.9e-05 22.5 0.0 2.7 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family DDE_Tnp_IS66_C PF13817.6 CQR51332.1 - 0.053 13.7 0.0 0.19 12.0 0.0 1.9 1 0 0 1 1 1 0 IS66 C-terminal element MutL PF13941.6 CQR51332.1 - 0.22 10.1 0.0 0.33 9.5 0.0 1.2 1 0 0 1 1 1 0 MutL protein TNFR_16_TM PF18422.1 CQR51332.1 - 0.23 11.5 0.8 13 5.9 0.1 2.4 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain GntP_permease PF02447.16 CQR51334.1 - 5.7e-167 555.9 45.7 6.8e-167 555.6 45.7 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 CQR51334.1 - 9.4e-23 80.9 45.5 9.4e-23 80.9 45.5 1.7 1 1 0 1 1 1 1 Citrate transporter Na_H_antiport_2 PF13726.6 CQR51334.1 - 0.0013 18.8 4.4 0.0013 18.8 4.4 3.5 2 1 1 3 3 3 1 Na+-H+ antiporter family DUF3007 PF11460.8 CQR51334.1 - 0.035 14.4 1.1 0.2 11.9 1.1 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) FCD PF07729.12 CQR51336.1 - 6.9e-20 71.7 0.5 9.6e-20 71.3 0.5 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR51336.1 - 2.1e-16 59.3 1.4 3.3e-16 58.7 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 CQR51336.1 - 0.0022 17.9 0.0 0.005 16.8 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain KfrA_N PF11740.8 CQR51336.1 - 0.024 15.3 0.1 0.082 13.6 0.0 1.9 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term HTH_41 PF14502.6 CQR51336.1 - 0.062 13.0 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Mnd1 PF03962.15 CQR51336.1 - 0.062 13.6 0.0 0.23 11.8 0.0 2.0 1 0 0 1 1 1 0 Mnd1 HTH domain HTH_IclR PF09339.10 CQR51336.1 - 0.082 12.7 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 CQR51336.1 - 0.088 12.9 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 CQR51336.1 - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB NAD_binding_2 PF03446.15 CQR51338.1 - 4.2e-42 144.0 0.0 6.5e-42 143.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 CQR51338.1 - 3.9e-22 79.0 1.9 4.3e-21 75.6 1.8 2.9 1 1 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 CQR51338.1 - 5.8e-05 23.6 0.0 0.0001 22.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 CQR51338.1 - 0.00035 21.4 0.0 0.00063 20.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 CQR51338.1 - 0.013 15.4 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR51338.1 - 0.013 15.7 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 CQR51338.1 - 0.033 14.2 0.0 0.09 12.8 0.0 1.7 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.9 CQR51338.1 - 0.044 13.6 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 CQR51338.1 - 0.071 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 CQR51338.1 - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA-synt_His PF13393.6 CQR51341.1 - 1e-76 258.2 0.0 1.3e-76 257.8 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 CQR51341.1 - 5.3e-05 23.3 0.0 0.0019 18.2 0.0 2.2 1 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 CQR51341.1 - 0.00091 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HisG PF01634.18 CQR51343.1 - 2.4e-51 173.8 0.0 3.1e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase Histidinol_dh PF00815.20 CQR51345.1 - 3.7e-173 576.2 3.5 4.4e-173 576.0 3.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase HHV-5_US34A PF17087.5 CQR51345.1 - 0.2 11.9 0.3 1.5 9.0 0.0 2.4 2 1 1 3 3 3 0 Herpesvirus US34A protein family IGPD PF00475.18 CQR51348.1 - 9.9e-64 214.0 0.3 1.2e-63 213.7 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase GATase PF00117.28 CQR51350.1 - 1.2e-19 70.8 0.0 1.4e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 CQR51350.1 - 1.9e-09 37.4 0.0 2.8e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 CQR51350.1 - 1.2e-05 25.1 0.5 0.00012 21.9 0.5 2.0 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 CQR51350.1 - 0.00028 20.8 0.0 0.0013 18.6 0.0 1.9 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 CQR51350.1 - 0.0072 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family His_biosynth PF00977.21 CQR51353.1 - 4e-74 248.9 3.5 4.5e-74 248.8 3.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 CQR51353.1 - 0.011 15.0 0.3 0.019 14.3 0.3 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 CQR51353.1 - 0.029 13.4 5.5 0.12 11.4 1.9 2.5 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 CQR51353.1 - 0.062 12.1 0.4 0.15 10.9 0.2 1.7 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Dus PF01207.17 CQR51353.1 - 0.23 10.5 0.8 4.4 6.3 0.2 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 CQR51356.1 - 4e-88 294.7 0.8 4.6e-88 294.6 0.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 CQR51356.1 - 2.6e-05 23.8 6.4 0.0075 15.7 0.4 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 CQR51356.1 - 0.00022 20.5 0.3 0.0012 18.0 0.2 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 CQR51356.1 - 0.00036 19.9 1.5 0.21 10.9 0.3 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 CQR51356.1 - 0.0016 17.9 0.4 0.0078 15.6 0.2 1.9 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 CQR51356.1 - 0.0047 16.2 1.0 0.015 14.6 0.4 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 CQR51356.1 - 0.0069 15.4 1.8 0.01 14.9 1.0 1.6 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 CQR51356.1 - 0.017 14.6 0.4 0.031 13.7 0.1 1.5 2 0 0 2 2 2 0 PcrB family ThiG PF05690.14 CQR51356.1 - 0.023 14.0 1.0 0.13 11.5 0.4 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PRA-CH PF01502.18 CQR51358.1 - 3.3e-33 113.3 0.1 5.2e-33 112.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 CQR51358.1 - 5.7e-17 61.9 0.6 8e-17 61.5 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 CQR51358.1 - 0.01 16.0 1.5 0.015 15.5 0.8 1.7 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain TSCPD PF12637.7 CQR51358.1 - 0.14 12.4 0.1 0.3 11.4 0.1 1.4 1 0 0 1 1 1 0 TSCPD domain PHP PF02811.19 CQR51360.1 - 2e-11 44.5 0.0 4e-11 43.5 0.0 1.6 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 CQR51360.1 - 0.01 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 PHP-associated DUF2757 PF10955.8 CQR51360.1 - 0.13 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) Pribosyltran_N PF13793.6 CQR51362.1 - 7.3e-46 154.9 0.0 5.8e-45 152.0 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 CQR51362.1 - 6.5e-21 75.2 0.9 6.5e-21 75.2 0.9 1.8 2 1 0 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 CQR51362.1 - 3.1e-14 52.8 1.6 1.4e-13 50.7 0.4 2.3 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 CQR51362.1 - 0.0018 17.7 0.0 0.0031 17.0 0.0 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 CQR51362.1 - 0.086 12.3 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase TPR_19 PF14559.6 CQR51365.1 - 1.2e-20 73.7 1.0 4.6e-10 39.9 0.2 4.6 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 CQR51365.1 - 9.4e-20 69.1 17.3 1.3e-07 31.2 0.7 7.3 9 0 0 9 9 7 4 Tetratricopeptide repeat TPR_1 PF00515.28 CQR51365.1 - 9e-15 53.8 17.6 7.4e-08 31.9 0.7 7.3 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_14 PF13428.6 CQR51365.1 - 2e-14 53.1 0.7 0.01 16.6 0.1 6.8 4 2 2 6 6 6 3 Tetratricopeptide repeat TPR_11 PF13414.6 CQR51365.1 - 1.4e-13 50.3 0.0 0.00065 19.3 0.0 4.8 3 1 1 4 4 4 4 TPR repeat TPR_16 PF13432.6 CQR51365.1 - 1.3e-09 38.5 2.3 0.00047 20.8 0.0 5.8 5 1 0 5 5 4 1 Tetratricopeptide repeat TPR_7 PF13176.6 CQR51365.1 - 1.6e-09 37.1 8.0 0.0031 17.4 0.1 6.8 7 0 0 7 7 6 1 Tetratricopeptide repeat TPR_17 PF13431.6 CQR51365.1 - 1.8e-09 37.3 1.7 0.044 14.2 0.0 5.6 6 0 0 6 6 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR51365.1 - 4.2e-09 35.9 5.4 0.00044 20.2 0.1 4.9 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR51365.1 - 4.9e-09 36.4 2.6 0.002 18.4 1.1 5.2 4 2 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 CQR51365.1 - 1.5e-08 34.7 1.9 0.04 14.6 0.1 6.1 7 0 0 7 7 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR51365.1 - 9e-08 32.2 1.9 0.00093 19.4 0.1 3.4 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 CQR51365.1 - 9.1e-07 28.9 0.8 0.0052 16.9 0.2 4.2 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_10 PF13374.6 CQR51365.1 - 5.9e-06 26.0 10.4 0.0073 16.2 0.3 6.3 6 0 0 6 6 6 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 CQR51365.1 - 6.2e-06 26.2 6.5 0.0058 16.7 0.1 4.3 4 0 0 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 CQR51365.1 - 4e-05 23.9 0.2 9.8 6.6 0.0 4.5 2 2 3 5 5 5 0 Tetratricopeptide repeat TPR_4 PF07721.14 CQR51365.1 - 0.00012 22.3 0.5 0.43 11.4 0.0 3.9 3 0 0 3 3 3 1 Tetratricopeptide repeat Coatomer_E PF04733.14 CQR51365.1 - 0.00013 21.5 1.3 0.01 15.3 0.0 2.8 2 1 1 3 3 3 1 Coatomer epsilon subunit HEAT_2 PF13646.6 CQR51365.1 - 0.0019 18.5 0.0 15 6.0 0.0 3.8 3 0 0 3 3 3 0 HEAT repeats TPR_15 PF13429.6 CQR51365.1 - 0.0068 15.7 0.5 3.6 6.7 0.0 3.2 3 2 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 CQR51365.1 - 0.01 14.8 0.0 0.087 11.7 0.0 2.1 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 Cas_Cas02710 PF09670.10 CQR51365.1 - 0.019 13.8 0.1 0.35 9.6 0.0 2.2 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cas02710) PknG_TPR PF16918.5 CQR51365.1 - 0.048 12.4 0.0 0.079 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein kinase G tetratricopeptide repeat SHNi-TPR PF10516.9 CQR51365.1 - 0.1 12.1 0.2 17 5.0 0.1 2.6 2 0 0 2 2 2 0 SHNi-TPR Alkyl_sulf_dimr PF14863.6 CQR51365.1 - 0.13 12.7 0.2 9.5 6.7 0.0 2.6 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation Pyr_redox_2 PF07992.14 CQR51366.1 - 2.3e-52 178.1 0.9 2.6e-52 177.9 0.9 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR51366.1 - 2.8e-29 102.4 0.3 5.9e-23 81.6 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR51366.1 - 1.4e-19 70.4 1.5 6.5e-17 61.9 0.2 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR51366.1 - 3.8e-07 30.2 0.1 2.4e-05 24.5 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 CQR51366.1 - 4.9e-06 25.5 0.0 0.0014 17.5 0.0 3.5 4 0 0 4 4 4 1 HI0933-like protein GIDA PF01134.22 CQR51366.1 - 6.9e-06 25.4 2.0 0.02 14.0 0.0 3.7 4 0 0 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 CQR51366.1 - 7.8e-06 25.2 9.3 9.2e-05 21.7 0.1 3.4 2 1 2 4 4 4 2 FAD binding domain K_oxygenase PF13434.6 CQR51366.1 - 5.1e-05 22.6 0.5 0.035 13.2 0.0 3.1 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 CQR51366.1 - 0.0001 22.7 0.1 0.00098 19.5 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.24 CQR51366.1 - 0.00012 21.8 7.8 0.12 11.9 0.0 3.6 2 2 1 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.17 CQR51366.1 - 0.00013 21.3 0.1 0.0013 18.0 0.1 2.3 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 CQR51366.1 - 0.00052 19.5 3.5 0.012 15.0 0.0 2.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR51366.1 - 0.00086 18.6 0.3 0.023 13.9 0.2 2.3 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.14 CQR51366.1 - 0.014 14.3 0.1 1.9 7.3 0.1 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Peripla_BP_6 PF13458.6 CQR51366.1 - 0.016 14.8 0.2 0.028 14.1 0.2 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Lycopene_cycl PF05834.12 CQR51366.1 - 0.039 13.0 0.1 1.4 7.9 0.1 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 CQR51366.1 - 0.13 12.3 2.4 6.8 6.7 0.1 3.3 3 1 0 3 3 3 0 FAD-NAD(P)-binding FMO-like PF00743.19 CQR51366.1 - 0.16 10.4 0.0 0.24 9.8 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Shikimate_DH PF01488.20 CQR51366.1 - 0.22 11.6 1.5 1.8 8.6 0.1 2.6 3 1 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase ThiC_Rad_SAM PF01964.18 CQR51369.1 - 1.8e-204 679.3 0.0 2.1e-204 679.1 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family ThiC-associated PF13667.6 CQR51369.1 - 1.6e-29 101.5 0.0 3.5e-29 100.4 0.0 1.6 1 0 0 1 1 1 1 ThiC-associated domain DUF1858 PF08984.11 CQR51371.1 - 3e-18 65.7 0.1 1e-17 64.0 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF1858) DUF438 PF04282.13 CQR51373.1 - 9.7e-28 95.9 1.0 2.3e-27 94.7 1.0 1.7 1 0 0 1 1 1 1 Family of unknown function (DUF438) PAS_10 PF13596.6 CQR51373.1 - 3.7e-27 95.0 0.4 3.3e-26 92.0 0.0 2.3 2 0 0 2 2 2 1 PAS domain Hemerythrin PF01814.23 CQR51373.1 - 1.1e-23 84.4 0.7 1.7e-23 83.7 0.1 1.7 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 CQR51373.1 - 0.00049 20.3 0.0 0.0012 19.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold ROK PF00480.20 CQR51375.1 - 1.6e-73 247.7 3.9 1.8e-73 247.6 3.9 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 CQR51375.1 - 7.4e-08 32.2 2.5 1.5e-06 27.9 2.5 2.2 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family VirionAssem_T7 PF11653.8 CQR51375.1 - 0.065 13.8 0.2 3.7 8.1 0.0 3.0 2 1 0 2 2 2 0 Bacteriophage T7 virion assembly protein FGGY_N PF00370.21 CQR51375.1 - 0.11 12.0 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain ATP_bind_2 PF03668.15 CQR51378.1 - 4.7e-112 373.9 0.0 5.4e-112 373.7 0.0 1.0 1 0 0 1 1 1 1 P-loop ATPase protein family AAA_18 PF13238.6 CQR51378.1 - 0.00024 21.7 0.2 0.11 13.0 0.0 3.1 2 2 1 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR51378.1 - 0.036 14.3 0.2 0.15 12.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 CQR51378.1 - 0.066 13.6 0.1 0.13 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 CQR51378.1 - 0.083 13.1 0.0 0.61 10.2 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 CQR51378.1 - 0.11 12.8 0.0 0.96 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain UPF0052 PF01933.18 CQR51381.1 - 1.7e-106 355.8 0.1 1.9e-106 355.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 LAGLIDADG_WhiA PF14527.6 CQR51383.1 - 4e-39 132.6 5.4 1.5e-35 121.1 0.2 2.6 3 0 0 3 3 3 2 WhiA LAGLIDADG-like domain WhiA_N PF10298.9 CQR51383.1 - 1.2e-37 127.9 2.6 9e-37 125.0 1.2 2.5 2 1 0 2 2 2 1 WhiA N-terminal LAGLIDADG-like domain HTH_WhiA PF02650.14 CQR51383.1 - 8.9e-36 122.1 0.9 1.9e-35 121.1 0.9 1.6 1 0 0 1 1 1 1 WhiA C-terminal HTH domain LAGLIDADG_3 PF14528.6 CQR51383.1 - 1.9e-07 31.3 1.1 0.00018 21.7 0.0 2.8 2 1 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_2 PF03161.13 CQR51383.1 - 0.021 14.9 0.1 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 LAGLIDADG DNA endonuclease family DUF1829 PF08862.10 CQR51383.1 - 0.065 13.7 0.1 0.14 12.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF1829 DUF4644 PF15486.6 CQR51383.1 - 0.2 11.4 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4644) PTS-HPr PF00381.19 CQR51386.1 - 1.4e-31 108.6 0.2 1.5e-31 108.4 0.2 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site SIMPL PF04402.14 CQR51388.1 - 5.6e-42 144.5 7.7 6.5e-42 144.2 7.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) PdaC PF13739.6 CQR51390.1 - 7.8e-22 78.1 1.8 2.1e-21 76.7 0.9 2.2 2 0 0 2 2 2 1 Deacetylase PdaC Cu_amine_oxidN1 PF07833.11 CQR51390.1 - 6.3e-14 52.2 0.0 1.1e-09 38.6 0.0 2.0 1 1 1 2 2 2 2 Copper amine oxidase N-terminal domain DUF3298 PF11738.8 CQR51390.1 - 1.4e-11 45.3 8.2 7.5e-10 39.7 0.6 2.8 2 0 0 2 2 2 2 Protein of unknown function (DUF3298) Lipase_GDSL_2 PF13472.6 CQR51392.1 - 8.5e-18 65.4 0.0 9.9e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR51392.1 - 2.1e-10 40.9 0.0 3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase CLP_protease PF00574.23 CQR51394.1 - 1.2e-88 295.8 0.1 1.4e-88 295.6 0.1 1.0 1 0 0 1 1 1 1 Clp protease GTP-bdg_M PF16360.5 CQR51394.1 - 0.029 14.9 0.1 3.6 8.3 0.0 2.2 2 0 0 2 2 2 0 GTP-binding GTPase Middle Region Sugar-bind PF04198.13 CQR51398.1 - 1e-61 208.3 0.6 1.4e-61 207.8 0.6 1.2 1 0 0 1 1 1 1 Putative sugar-binding domain Gp_dh_C PF02800.20 CQR51400.1 - 7.8e-62 207.5 0.3 1.2e-61 206.9 0.3 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 CQR51400.1 - 2.8e-40 136.7 0.5 1.7e-39 134.3 0.1 2.4 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 CQR51400.1 - 0.0047 17.6 0.5 0.016 15.8 0.1 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 CQR51400.1 - 0.0052 16.9 0.5 0.024 14.8 0.4 2.3 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 CQR51400.1 - 0.019 14.3 0.1 0.036 13.4 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 CQR51400.1 - 0.049 13.6 0.1 0.1 12.6 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PGK PF00162.19 CQR51403.1 - 2.1e-160 533.8 1.0 2.4e-160 533.6 1.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase TIM PF00121.18 CQR51404.1 - 3.6e-94 314.7 0.3 4e-94 314.5 0.3 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase Thiamine_BP PF01910.17 CQR51404.1 - 0.096 12.6 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 0 Thiamine-binding protein iPGM_N PF06415.13 CQR51407.1 - 2.8e-86 288.4 0.0 4.5e-86 287.7 0.0 1.3 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 CQR51407.1 - 3.8e-79 265.6 0.1 4.4e-79 265.4 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 CQR51407.1 - 0.0021 17.7 0.0 0.0047 16.6 0.0 1.5 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 CQR51407.1 - 0.012 15.0 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Sulfatase Enolase_C PF00113.22 CQR51409.1 - 6.7e-135 449.0 0.1 8.6e-135 448.7 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 CQR51409.1 - 4.1e-62 208.2 0.3 7.1e-62 207.4 0.3 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 CQR51409.1 - 8.4e-06 25.5 0.0 1.4e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 CQR51409.1 - 0.00016 20.9 0.6 0.00029 20.1 0.1 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus YesK PF14150.6 CQR51412.1 - 2.6e-08 33.9 14.2 2.9e-08 33.8 14.2 1.1 1 0 0 1 1 1 1 YesK-like protein SKG6 PF08693.10 CQR51412.1 - 0.67 9.4 0.1 0.67 9.4 0.1 2.7 3 0 0 3 3 3 0 Transmembrane alpha-helix domain SecG PF03840.14 CQR51414.1 - 4.5e-21 74.7 9.1 5e-21 74.5 9.1 1.0 1 0 0 1 1 1 1 Preprotein translocase SecG subunit RNB PF00773.19 CQR51416.1 - 1e-114 383.3 0.0 3e-114 381.8 0.0 1.7 2 0 0 2 2 2 1 RNB domain CSD2 PF17876.1 CQR51416.1 - 1.9e-40 136.9 1.2 4.9e-30 103.5 0.6 2.5 2 0 0 2 2 2 2 Cold shock domain OB_RNB PF08206.11 CQR51416.1 - 3.7e-32 109.8 5.5 1.1e-20 73.1 0.1 3.0 3 0 0 3 3 3 2 Ribonuclease B OB domain S1 PF00575.23 CQR51416.1 - 8e-14 51.7 2.1 8.3e-13 48.5 0.1 2.7 2 0 0 2 2 2 1 S1 RNA binding domain OB_Dis3 PF17849.1 CQR51416.1 - 3.9e-05 23.6 0.0 0.0016 18.4 0.0 2.5 2 0 0 2 2 2 1 Dis3-like cold-shock domain 2 (CSD2) DUF3438 PF11920.8 CQR51416.1 - 0.039 13.2 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3438) CSD PF00313.22 CQR51416.1 - 0.12 12.2 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 'Cold-shock' DNA-binding domain SmpB PF01668.18 CQR51419.1 - 1.5e-59 200.0 0.5 1.8e-59 199.8 0.5 1.0 1 0 0 1 1 1 1 SmpB protein Resolvase PF00239.21 CQR51421.1 - 5.2e-29 101.2 0.6 5.2e-29 101.2 0.6 2.6 3 0 0 3 3 3 1 Resolvase, N terminal domain Recombinase PF07508.13 CQR51421.1 - 5e-13 49.4 6.7 1.2e-12 48.1 0.5 3.5 4 0 0 4 4 4 1 Recombinase Zn_ribbon_recom PF13408.6 CQR51421.1 - 3.5e-09 37.0 1.9 3.5e-09 37.0 1.9 2.2 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain POTRA_2 PF08479.11 CQR51421.1 - 0.00024 20.9 1.1 2.3 8.1 0.0 3.7 4 0 0 4 4 4 2 POTRA domain, ShlB-type Syntaxin-6_N PF09177.11 CQR51421.1 - 0.0038 17.7 2.2 0.011 16.3 2.2 1.8 1 0 0 1 1 1 1 Syntaxin 6, N-terminal PDZ_4 PF17816.1 CQR51421.1 - 0.082 13.3 3.4 1.3 9.5 0.3 2.6 1 1 1 2 2 2 0 PDZ domain UPF0172 PF03665.13 CQR51421.1 - 0.32 11.0 1.4 1.7 8.6 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0172) HTH_3 PF01381.22 CQR51423.1 - 2.2e-17 62.9 0.1 4.1e-09 36.4 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix HTH_19 PF12844.7 CQR51423.1 - 1.2e-12 47.6 0.4 6.5e-07 29.3 0.2 2.7 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_26 PF13443.6 CQR51423.1 - 1.4e-10 41.4 0.0 6e-05 23.4 0.0 2.4 2 1 0 2 2 2 2 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 CQR51423.1 - 4e-06 27.1 0.0 1.9e-05 24.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR51423.1 - 7.8e-05 22.5 0.5 0.0002 21.1 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR51423.1 - 0.033 14.3 0.0 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 CQR51425.1 - 2.5e-07 30.7 0.0 3.4e-07 30.2 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix HTH_AraC PF00165.23 CQR51425.1 - 0.00017 21.6 0.0 0.00069 19.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_31 PF13560.6 CQR51425.1 - 0.0021 18.3 0.0 0.0022 18.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 CQR51425.1 - 0.0049 16.6 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_26 PF13443.6 CQR51425.1 - 0.0077 16.6 0.0 0.0094 16.4 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 CQR51425.1 - 0.031 14.3 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR51425.1 - 0.048 13.7 0.0 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 CQR51425.1 - 0.049 13.4 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_35 PF13693.6 CQR51425.1 - 0.064 13.3 0.0 0.074 13.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_terminase PF10668.9 CQR51425.1 - 0.075 13.1 0.1 0.58 10.2 0.0 2.0 1 1 1 2 2 2 0 Phage terminase small subunit HTH_24 PF13412.6 CQR51425.1 - 0.13 11.8 0.0 0.41 10.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MgtE_N PF03448.17 CQR51433.1 - 0.034 14.8 0.2 0.045 14.3 0.2 1.2 1 0 0 1 1 1 0 MgtE intracellular N domain SH3_12 PF18129.1 CQR51433.1 - 0.037 14.1 0.0 0.059 13.5 0.0 1.3 1 0 0 1 1 1 0 Xrn1 SH3-like domain DUF4438 PF14505.6 CQR51436.1 - 0.11 11.4 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) AAA_23 PF13476.6 CQR51440.1 - 2.6e-10 41.1 15.0 1.1e-09 39.0 15.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR51440.1 - 4.7e-10 39.7 1.5 7.9e-10 39.0 1.5 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 CQR51440.1 - 1.9e-08 34.0 0.7 7.6e-07 28.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR51440.1 - 0.00012 21.7 0.0 0.00022 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR51440.1 - 0.018 14.8 0.1 0.045 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 CQR51440.1 - 0.12 12.0 0.0 0.12 12.0 0.0 3.0 3 0 0 3 3 3 0 AAA domain CCDC74_C PF14917.6 CQR51440.1 - 0.39 11.2 5.7 1.8 9.1 0.2 3.9 4 1 1 5 5 5 0 Coiled coil protein 74, C terminal PRKG1_interact PF15898.5 CQR51440.1 - 0.52 11.2 11.0 0.083 13.8 5.4 2.5 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain CDPS PF16715.5 CQR51440.1 - 1.1 8.8 4.7 1.9 8.1 4.7 1.2 1 0 0 1 1 1 0 Cyclodipeptide synthase Atg14 PF10186.9 CQR51440.1 - 1.3 8.0 9.9 2 7.5 9.9 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 BLOC1_2 PF10046.9 CQR51440.1 - 1.4 9.3 11.8 0.063 13.6 1.9 3.1 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_24 PF13479.6 CQR51442.1 - 2.6e-59 200.3 0.1 3.3e-59 199.9 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR51442.1 - 0.0014 19.0 0.2 0.0033 17.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain Roc PF08477.13 CQR51442.1 - 0.002 18.3 0.0 0.0037 17.5 0.0 1.4 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 CQR51442.1 - 0.0064 17.0 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Ras PF00071.22 CQR51442.1 - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Ras family RNA_helicase PF00910.22 CQR51442.1 - 0.019 15.4 0.0 0.039 14.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 CQR51442.1 - 0.025 14.9 0.0 0.38 11.0 0.0 2.5 1 1 1 2 2 2 0 AAA domain ATPase_2 PF01637.18 CQR51442.1 - 0.026 14.5 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 CQR51442.1 - 0.09 12.3 0.1 0.6 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR51442.1 - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 CQR51442.1 - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase DAP3 PF10236.9 CQR51442.1 - 0.13 11.4 0.1 0.2 10.8 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Pex14_N PF04695.13 CQR51444.1 - 0.029 15.0 12.0 0.04 14.6 12.0 1.1 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF2076 PF09849.9 CQR51444.1 - 0.071 13.1 13.5 0.094 12.7 13.5 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Spt20 PF12090.8 CQR51444.1 - 7.5 6.1 14.6 10 5.7 14.6 1.2 1 0 0 1 1 1 0 Spt20 family ResIII PF04851.15 CQR51446.1 - 2.5e-28 99.2 0.0 5.6e-28 98.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 CQR51446.1 - 2.4e-13 50.4 0.0 5.5e-11 42.8 0.0 2.7 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 CQR51446.1 - 4.8e-11 42.7 0.2 1.1e-10 41.6 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase SWI2_SNF2 PF18766.1 CQR51446.1 - 2e-09 37.4 0.0 4.3e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase AAA_30 PF13604.6 CQR51446.1 - 1.3e-05 25.0 0.8 2.6e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 CQR51446.1 - 0.00011 21.6 0.0 0.00023 20.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 CQR51446.1 - 0.0054 17.0 0.8 0.014 15.7 0.1 2.0 2 1 0 2 2 2 1 AAA domain SPOR PF05036.13 CQR51446.1 - 0.017 15.5 0.4 5.3 7.5 0.0 3.6 3 1 0 3 3 3 0 Sporulation related domain SNF2_N PF00176.23 CQR51446.1 - 0.13 11.0 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_11 PF13086.6 CQR51446.1 - 1.1 9.0 5.1 1.1 9.0 0.2 2.6 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.6 CQR51450.1 - 3.3e-30 105.1 0.0 6.8e-30 104.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain PriCT_2 PF08707.11 CQR51450.1 - 4.5e-21 75.0 1.9 4.8e-21 74.9 0.1 2.2 2 0 0 2 2 2 1 Primase C terminal 2 (PriCT-2) WVELL PF14043.6 CQR51450.1 - 0.059 13.2 0.0 0.19 11.5 0.0 1.9 1 0 0 1 1 1 0 WVELL protein RusA PF05866.11 CQR51452.1 - 2.3e-23 83.1 0.0 2.7e-23 82.8 0.0 1.0 1 0 0 1 1 1 1 Endodeoxyribonuclease RusA CENP-F_leu_zip PF10473.9 CQR51458.1 - 0.00065 19.7 4.2 0.00065 19.7 4.2 2.1 1 1 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.15 CQR51458.1 - 0.0033 17.2 2.1 0.029 14.1 0.9 2.7 2 0 0 2 2 2 1 Septum formation initiator HALZ PF02183.18 CQR51458.1 - 0.0036 17.5 0.7 0.076 13.3 0.1 2.8 3 1 1 4 4 4 2 Homeobox associated leucine zipper DUF948 PF06103.11 CQR51458.1 - 0.012 15.8 0.1 0.03 14.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) GAS PF13851.6 CQR51458.1 - 0.014 14.8 4.3 0.022 14.1 3.2 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Troponin PF00992.20 CQR51458.1 - 0.015 15.6 6.8 0.015 15.6 6.8 2.9 1 1 0 2 2 2 0 Troponin HTH_Tnp_1 PF01527.20 CQR51458.1 - 0.017 15.4 6.6 0.021 15.1 0.1 3.5 2 1 0 3 3 3 0 Transposase ZapB PF06005.12 CQR51458.1 - 0.026 15.0 1.8 0.026 15.0 1.8 3.4 3 0 0 3 3 3 0 Cell division protein ZapB TMF_TATA_bd PF12325.8 CQR51458.1 - 0.03 14.5 1.2 0.03 14.5 1.2 3.0 2 1 1 4 4 3 0 TATA element modulatory factor 1 TATA binding HTH_28 PF13518.6 CQR51458.1 - 0.048 13.8 0.0 0.048 13.8 0.0 2.8 2 2 0 2 2 2 0 Helix-turn-helix domain GAT PF03127.14 CQR51458.1 - 0.054 13.8 0.9 0.22 11.8 1.4 1.8 2 0 0 2 2 1 0 GAT domain bZIP_1 PF00170.21 CQR51458.1 - 0.054 13.6 0.2 0.28 11.3 0.1 2.3 2 0 0 2 2 2 0 bZIP transcription factor YabA PF06156.13 CQR51458.1 - 0.069 13.8 0.1 0.069 13.8 0.1 2.4 3 0 0 3 3 3 0 Initiation control protein YabA DUF3450 PF11932.8 CQR51458.1 - 0.087 12.1 6.4 0.12 11.6 5.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 CQR51458.1 - 0.13 12.6 0.7 1.7 9.0 0.3 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF5082 PF16888.5 CQR51458.1 - 0.22 11.8 6.9 0.43 10.9 0.4 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) Baculo_PEP_C PF04513.12 CQR51458.1 - 0.24 11.4 0.7 0.4 10.7 0.7 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phasin_2 PF09361.10 CQR51458.1 - 0.25 11.6 4.7 0.52 10.6 4.7 1.5 1 0 0 1 1 1 0 Phasin protein Jnk-SapK_ap_N PF09744.9 CQR51458.1 - 0.62 10.3 13.0 0.026 14.8 5.3 2.6 2 1 1 3 3 2 0 JNK_SAPK-associated protein-1 JIP_LZII PF16471.5 CQR51458.1 - 0.93 9.7 5.8 0.24 11.6 1.1 2.5 2 2 1 3 3 2 0 JNK-interacting protein leucine zipper II ADIP PF11559.8 CQR51458.1 - 1.1 9.4 11.3 0.048 13.7 1.6 2.8 2 1 0 3 3 3 0 Afadin- and alpha -actinin-Binding Cep57_CLD_2 PF14197.6 CQR51458.1 - 1.4 9.1 6.1 2.5 8.2 2.5 2.9 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 THOC7 PF05615.13 CQR51458.1 - 2.2 8.6 9.8 59 4.0 9.8 2.6 1 1 0 1 1 1 0 Tho complex subunit 7 TPR_MLP1_2 PF07926.12 CQR51458.1 - 2.5 8.2 14.5 1.9 8.6 0.1 3.4 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Alanine_zipper PF11839.8 CQR51458.1 - 7.7 7.0 16.0 0.13 12.6 5.6 3.1 1 1 3 4 4 4 0 Alanine-zipper, major outer membrane lipoprotein MAS20 PF02064.15 CQR51458.1 - 9.4 6.3 8.7 0.16 12.1 0.6 2.0 2 1 0 2 2 2 0 MAS20 protein import receptor HTH_Tnp_1 PF01527.20 CQR51459.1 - 0.00063 20.0 0.8 0.012 15.9 0.1 2.5 2 0 0 2 2 2 1 Transposase Myb_DNA-bind_6 PF13921.6 CQR51459.1 - 0.0048 17.1 1.4 0.02 15.2 0.0 2.5 3 0 0 3 3 3 1 Myb-like DNA-binding domain DUF1492 PF07374.11 CQR51459.1 - 0.01 16.0 0.3 0.05 13.8 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1492) Sigma70_ECF PF07638.11 CQR51459.1 - 0.059 13.2 0.2 0.13 12.1 0.2 1.8 1 1 0 1 1 1 0 ECF sigma factor E2F_TDP PF02319.20 CQR51459.1 - 0.064 13.3 0.2 0.15 12.2 0.2 1.6 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain DUF4164 PF13747.6 CQR51459.1 - 9.7 6.6 10.0 1.2 9.5 3.8 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4164) Terminase_2 PF03592.16 CQR51464.1 - 3.8e-44 150.6 0.1 5.2e-44 150.1 0.1 1.2 1 0 0 1 1 1 1 Terminase small subunit Hydrolase PF00702.26 CQR51464.1 - 9.3e-05 22.8 0.1 0.00011 22.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DnaJ_CXXCXGXG PF00684.19 CQR51464.1 - 0.02 15.2 0.1 1.7 9.1 0.1 2.3 2 0 0 2 2 2 0 DnaJ central domain FAM163 PF15069.6 CQR51464.1 - 0.037 14.5 0.0 0.069 13.6 0.0 1.4 1 0 0 1 1 1 0 FAM163 family Terminase_6C PF17289.2 CQR51465.1 - 1.2e-05 25.5 0.5 2.7e-05 24.3 0.5 1.6 1 0 0 1 1 1 1 Terminase RNaseH-like domain DUF1874 PF08960.10 CQR51465.1 - 0.0097 16.0 0.1 0.24 11.6 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1874) alpha-hel2 PF14456.6 CQR51467.1 - 0.0029 17.0 0.0 0.0054 16.1 0.0 1.5 1 0 0 1 1 1 1 Alpha-helical domain 2 Rimk_N PF18030.1 CQR51467.1 - 0.17 12.3 0.1 25 5.4 0.0 2.6 1 1 1 2 2 2 0 RimK PreATP-grasp domain Phage_min_cap2 PF06152.11 CQR51469.1 - 6.4e-55 186.5 0.1 1.2e-54 185.7 0.1 1.4 1 0 0 1 1 1 1 Phage minor capsid protein 2 Ntox50 PF15542.6 CQR51469.1 - 3.3e-25 88.7 1.3 3.3e-25 88.7 1.3 2.2 3 0 0 3 3 3 1 Bacterial toxin 50 SM-ATX PF14438.6 CQR51471.1 - 0.063 13.4 0.0 0.075 13.2 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Phage_GP20 PF06810.11 CQR51473.1 - 9.1e-41 139.1 4.9 1.3e-40 138.6 4.9 1.1 1 0 0 1 1 1 1 Phage minor structural protein GP20 DUF2730 PF10805.8 CQR51473.1 - 0.0028 17.7 1.1 0.0055 16.8 1.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) Cep57_CLD_2 PF14197.6 CQR51473.1 - 0.0029 17.7 0.4 0.0067 16.5 0.4 1.6 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 DUF16 PF01519.16 CQR51473.1 - 0.0062 17.0 1.5 0.0094 16.4 1.5 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF16 DUF4897 PF16238.5 CQR51473.1 - 0.013 15.4 0.3 0.018 14.9 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) Leu_zip PF15294.6 CQR51473.1 - 0.015 14.8 5.9 0.026 14.0 5.9 1.5 1 1 0 1 1 1 0 Leucine zipper TMF_TATA_bd PF12325.8 CQR51473.1 - 0.018 15.3 2.0 0.035 14.3 2.0 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF724 PF05266.14 CQR51473.1 - 0.042 13.7 2.5 0.059 13.2 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Helo_like_N PF17111.5 CQR51473.1 - 0.074 12.4 1.2 0.12 11.7 1.2 1.3 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins UTP15_C PF09384.10 CQR51473.1 - 0.08 12.6 0.2 0.18 11.5 0.1 1.5 1 1 0 1 1 1 0 UTP15 C terminal Tho2 PF11262.8 CQR51473.1 - 0.15 11.3 1.8 0.18 11.0 1.8 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Mei5 PF10376.9 CQR51473.1 - 0.28 11.0 5.1 0.65 9.8 3.5 2.1 1 1 1 2 2 2 0 Double-strand recombination repair protein ZapB PF06005.12 CQR51473.1 - 1.5 9.3 5.4 0.86 10.1 0.7 2.4 1 1 1 2 2 2 0 Cell division protein ZapB MCR_beta_N PF02783.15 CQR51475.1 - 0.075 12.7 0.4 0.21 11.2 0.1 1.8 1 1 1 2 2 2 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Phage_head_fibr PF11133.8 CQR51477.1 - 1.2e-20 74.1 5.5 1.2e-20 74.1 5.5 1.1 1 0 0 1 1 1 1 Head fiber protein Minor_capsid_2 PF11114.8 CQR51480.1 - 1.1e-06 28.6 0.2 1.4e-06 28.3 0.2 1.3 1 0 0 1 1 1 1 Minor capsid protein Phage_Gp15 PF06854.11 CQR51484.1 - 1.3e-07 31.8 0.0 2.1e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Bacteriophage Gp15 protein DUF1841 PF08897.11 CQR51485.1 - 0.053 13.6 0.0 0.099 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) Condensin2nSMC PF12422.8 CQR51485.1 - 0.14 12.3 0.4 1.2 9.3 0.3 2.6 1 1 1 2 2 2 0 Condensin II non structural maintenance of chromosomes subunit Het-C PF07217.11 CQR51485.1 - 0.18 10.3 2.4 1.3 7.5 0.2 2.4 1 1 0 2 2 2 0 Heterokaryon incompatibility protein Het-C EST1 PF10374.9 CQR51485.1 - 0.18 12.4 0.0 0.48 11.1 0.0 1.7 1 0 0 1 1 1 0 Telomerase activating protein Est1 Vac14_Fab1_bd PF12755.7 CQR51485.1 - 0.23 12.1 0.7 1.8e+02 2.8 0.0 4.7 4 1 1 5 5 5 0 Vacuolar 14 Fab1-binding region DUF2130 PF09903.9 CQR51485.1 - 0.28 10.4 1.5 0.58 9.4 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) WXG100 PF06013.12 CQR51485.1 - 0.33 11.2 3.1 6.9 7.0 0.0 4.6 4 0 0 4 4 4 0 Proteins of 100 residues with WXG AIP3 PF03915.13 CQR51485.1 - 0.67 9.0 2.2 4.7 6.2 0.6 2.1 2 0 0 2 2 2 0 Actin interacting protein 3 DUF3385 PF11865.8 CQR51485.1 - 1.1 9.1 3.8 4.5 7.1 0.1 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF3385) T2SSM PF04612.12 CQR51491.1 - 0.011 15.8 0.2 0.013 15.5 0.2 1.0 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M XhlA PF10779.9 CQR51491.1 - 0.032 14.4 0.2 0.032 14.4 0.2 2.1 2 0 0 2 2 2 0 Haemolysin XhlA DUF2613 PF11021.8 CQR51491.1 - 1 9.5 4.3 1.7 8.9 4.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2613) DUF4175 PF13779.6 CQR51492.1 - 0.37 8.6 0.8 0.4 8.5 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Peptidase_M15_4 PF13539.6 CQR51493.1 - 1.2e-19 70.6 0.7 2.6e-19 69.5 0.7 1.6 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase VanY PF02557.17 CQR51493.1 - 4.1e-10 39.6 0.0 8.7e-10 38.5 0.0 1.5 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase CALCOCO1 PF07888.11 CQR51493.1 - 0.0016 17.4 0.7 0.0021 17.0 0.7 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like GCN5L1 PF06320.13 CQR51493.1 - 0.006 16.7 1.3 0.011 15.8 1.3 1.4 1 0 0 1 1 1 1 GCN5-like protein 1 (GCN5L1) APG6_N PF17675.1 CQR51493.1 - 0.012 16.1 1.9 0.021 15.4 1.9 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region DivIC PF04977.15 CQR51493.1 - 0.013 15.2 3.6 0.031 14.0 3.6 1.6 1 0 0 1 1 1 0 Septum formation initiator Spc7 PF08317.11 CQR51493.1 - 0.038 12.9 1.8 0.055 12.3 1.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF848 PF05852.11 CQR51493.1 - 0.067 13.3 0.3 0.12 12.5 0.3 1.4 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Kre28 PF17097.5 CQR51493.1 - 0.097 11.6 0.3 0.14 11.1 0.3 1.1 1 0 0 1 1 1 0 Spindle pole body component BLOC1_2 PF10046.9 CQR51493.1 - 0.15 12.3 3.3 0.14 12.5 1.4 1.9 2 1 1 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ZapB PF06005.12 CQR51493.1 - 0.28 11.6 2.9 0.65 10.5 2.9 1.8 1 1 0 1 1 1 0 Cell division protein ZapB FlxA PF14282.6 CQR51493.1 - 0.56 10.2 6.4 0.96 9.5 4.3 2.1 1 1 1 2 2 2 0 FlxA-like protein AAA_13 PF13166.6 CQR51493.1 - 0.61 8.7 2.6 0.82 8.2 2.6 1.1 1 0 0 1 1 1 0 AAA domain SlyX PF04102.12 CQR51493.1 - 1.3 9.7 4.2 1.7 9.3 2.4 2.2 2 1 0 2 2 1 0 SlyX DUF4352 PF11611.8 CQR51494.1 - 1e-05 25.8 0.6 0.00014 22.2 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4352) Cu_amine_oxidN1 PF07833.11 CQR51494.1 - 0.00011 22.6 0.1 0.00028 21.3 0.1 1.8 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain zf-4CXXC_R1 PF10497.9 CQR51496.1 - 0.094 13.0 0.1 0.11 12.7 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 HTH_26 PF13443.6 CQR51497.1 - 2.7e-10 40.5 0.1 3.1e-10 40.3 0.1 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR51497.1 - 0.0089 16.1 0.0 0.015 15.3 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 CQR51497.1 - 0.019 14.9 0.1 0.023 14.6 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain CheR_N PF03705.15 CQR51497.1 - 0.035 13.8 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain TrmB PF01978.19 CQR51497.1 - 0.096 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1175 PF06672.11 CQR51497.1 - 0.18 11.5 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1175) NAD_binding_4 PF07993.12 CQR51500.1 - 4.3e-42 144.0 0.0 6e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.21 CQR51500.1 - 1.8e-14 53.8 0.0 2.6e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Abhydrolase_6 PF12697.7 CQR51500.1 - 7e-14 53.0 0.0 1.8e-13 51.6 0.0 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family 3Beta_HSD PF01073.19 CQR51500.1 - 7.9e-08 31.6 0.1 1.2e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 CQR51500.1 - 9.8e-07 28.5 0.4 2e-06 27.5 0.4 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 CQR51500.1 - 2.7e-06 27.4 0.0 6.7e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 CQR51500.1 - 1.3e-05 24.7 0.1 2.3e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Abhydrolase_1 PF00561.20 CQR51500.1 - 0.0014 18.4 0.1 0.0034 17.1 0.0 1.7 2 0 0 2 2 2 1 alpha/beta hydrolase fold NmrA PF05368.13 CQR51500.1 - 0.0016 18.0 0.1 0.0027 17.3 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 CQR51500.1 - 0.037 13.1 0.2 0.063 12.4 0.2 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein TetR_N PF00440.23 CQR51501.1 - 1.6e-12 47.0 0.1 2.8e-12 46.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_13 PF16925.5 CQR51501.1 - 1.9e-08 34.2 0.0 3.7e-08 33.3 0.0 1.5 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 CQR51501.1 - 1.5e-05 25.0 0.2 0.00036 20.6 0.1 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Mnd1 PF03962.15 CQR51501.1 - 0.064 13.6 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 Mnd1 HTH domain HAD_2 PF13419.6 CQR51501.1 - 0.068 13.3 0.2 0.11 12.6 0.2 1.2 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Oscp1 PF10188.9 CQR51501.1 - 0.1 12.7 0.8 0.77 9.9 0.2 2.2 1 1 1 2 2 2 0 Organic solute transport protein 1 LPD16 PF18830.1 CQR51501.1 - 0.13 12.3 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 16 Apo-CIII PF05778.12 CQR51502.1 - 0.12 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) Peptidase_M48 PF01435.18 CQR51503.1 - 0.1 12.4 0.2 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 Peptidase family M48 Zn_peptidase PF04228.13 CQR51503.1 - 0.16 11.3 0.1 0.24 10.8 0.1 1.1 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF1471 PF07338.13 CQR51505.1 - 0.0066 16.4 0.3 0.009 16.0 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1471) Zeta_toxin PF06414.12 CQR51506.1 - 2e-07 30.5 0.2 3e-06 26.7 0.2 2.0 1 1 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 CQR51506.1 - 3.2e-05 24.1 0.0 5.7e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 CQR51506.1 - 0.0014 18.3 0.0 0.0038 16.9 0.0 1.7 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_29 PF13555.6 CQR51506.1 - 0.022 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 CQR51506.1 - 0.026 15.0 0.1 0.038 14.5 0.1 1.6 1 1 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 CQR51506.1 - 0.048 13.6 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase AAA_13 PF13166.6 CQR51506.1 - 0.058 12.0 0.0 0.073 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR51506.1 - 0.06 13.8 0.0 0.065 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RAG2_PHD PF13341.6 CQR51506.1 - 0.099 12.7 0.2 0.49 10.5 0.0 2.1 2 0 0 2 2 2 0 RAG2 PHD domain Osmo_MPGsynth PF09488.10 CQR51509.1 - 0.043 12.5 0.0 0.049 12.3 0.0 1.0 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Glyoxalase PF00903.25 CQR51510.1 - 1.5e-05 25.2 0.0 2.4e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Methyltrans_RNA PF04452.14 CQR51510.1 - 0.023 14.0 0.1 0.03 13.7 0.1 1.2 1 0 0 1 1 1 0 RNA methyltransferase Methyltransf_7 PF03492.15 CQR51510.1 - 0.049 12.8 0.1 0.062 12.5 0.1 1.1 1 0 0 1 1 1 0 SAM dependent carboxyl methyltransferase Zn-C2H2_12 PF18112.1 CQR51511.1 - 0.72 10.4 5.8 7.6 7.1 0.3 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain ResIII PF04851.15 CQR51512.1 - 3.4e-19 69.5 0.2 8.6e-19 68.2 0.1 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 CQR51512.1 - 1.5e-09 37.9 0.1 4.2e-09 36.4 0.1 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR51512.1 - 0.0001 22.6 0.1 0.00036 20.8 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 CQR51512.1 - 0.00015 21.5 0.1 0.00029 20.6 0.1 1.4 1 0 0 1 1 1 1 SWI2/SNF2 ATPase SNF2_N PF00176.23 CQR51512.1 - 0.0032 16.3 0.0 0.017 13.9 0.0 1.9 1 1 0 1 1 1 1 SNF2 family N-terminal domain ZapB PF06005.12 CQR51512.1 - 0.011 16.1 3.6 0.026 14.9 0.3 2.4 2 0 0 2 2 2 0 Cell division protein ZapB Glyoxalase_6 PF18029.1 CQR51513.1 - 2.6e-05 24.9 0.0 4.3e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 CQR51513.1 - 6.1e-05 23.2 0.0 0.00015 21.9 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 CQR51513.1 - 0.014 15.7 0.0 0.024 14.9 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HTH_18 PF12833.7 CQR51515.1 - 1.7e-15 57.1 0.0 4.6e-15 55.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51515.1 - 3.5e-15 55.6 0.1 2.5e-07 30.6 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR51515.1 - 8.2e-10 38.9 4.9 1.8e-09 37.8 4.9 1.5 1 0 0 1 1 1 1 Cache domain GGDEF_2 PF17853.1 CQR51515.1 - 0.0001 22.5 0.0 0.00056 20.2 0.0 2.2 2 0 0 2 2 2 1 GGDEF-like domain GHD PF17834.1 CQR51515.1 - 0.0024 17.9 0.1 0.0065 16.5 0.1 1.7 1 0 0 1 1 1 1 Beta-sandwich domain in beta galactosidase CobN-Mg_chel PF02514.16 CQR51515.1 - 0.009 13.8 0.0 0.015 13.1 0.0 1.3 1 0 0 1 1 1 1 CobN/Magnesium Chelatase BPD_transp_1 PF00528.22 CQR51516.1 - 1.5e-18 67.2 17.6 1.5e-18 67.2 17.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2189 PF09955.9 CQR51516.1 - 0.012 15.8 3.5 0.012 15.8 3.5 3.0 1 1 2 3 3 3 0 Predicted integral membrane protein (DUF2189) BPD_transp_1 PF00528.22 CQR51517.1 - 1.5e-14 54.2 13.3 1.5e-14 54.2 13.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF373 PF04123.13 CQR51517.1 - 4.7 6.5 11.5 0.21 11.0 6.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF3502 PF12010.8 CQR51518.1 - 1.3e-17 64.7 0.1 7e-17 62.3 0.0 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF3502) SBP_bac_1 PF01547.25 CQR51518.1 - 1.1e-12 48.6 10.4 3.2e-12 47.0 10.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LPAM_2 PF13627.6 CQR51518.1 - 1.6 8.7 3.3 2.6 8.0 3.3 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Glyco_hydro_130 PF04041.13 CQR51519.1 - 4e-58 196.8 0.0 8.1e-58 195.9 0.0 1.5 2 0 0 2 2 2 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_43 PF04616.14 CQR51519.1 - 0.034 13.4 0.1 1.9 7.7 0.0 2.5 1 1 0 2 2 2 0 Glycosyl hydrolases family 43 Lyase_8 PF02278.18 CQR51520.1 - 2.6e-58 197.5 2.7 2.6e-58 197.5 2.7 3.2 3 1 1 4 4 4 1 Polysaccharide lyase family 8, super-sandwich domain F5_F8_type_C PF00754.25 CQR51520.1 - 2.3e-49 166.7 18.9 2.5e-26 92.3 1.7 4.6 4 1 0 4 4 4 2 F5/8 type C domain SLH PF00395.20 CQR51520.1 - 1.3e-38 130.7 4.8 5.9e-14 51.8 0.1 3.9 3 0 0 3 3 3 3 S-layer homology domain Lyase_8_N PF08124.11 CQR51520.1 - 2.3e-25 89.2 1.7 4.5e-25 88.2 1.7 1.4 1 0 0 1 1 1 1 Polysaccharide lyase family 8, N terminal alpha-helical domain Big_1 PF02369.16 CQR51520.1 - 1.1e-24 86.2 50.8 1.5e-07 31.3 4.9 6.2 6 0 0 6 6 6 4 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 CQR51520.1 - 9.1e-21 73.9 49.3 2.5e-06 27.7 3.8 6.2 6 0 0 6 6 6 4 Carboxypeptidase regulatory-like domain Lyase_8_C PF02884.17 CQR51520.1 - 2.7e-16 59.8 0.2 5.2e-15 55.7 0.1 3.1 2 0 0 2 2 2 1 Polysaccharide lyase family 8, C-terminal beta-sandwich domain MG4 PF17789.1 CQR51520.1 - 1.5e-11 44.3 12.9 0.014 15.6 0.1 5.1 5 0 0 5 5 5 4 Macroglobulin domain MG4 SdrD_B PF17210.3 CQR51520.1 - 2.6e-09 37.3 17.1 0.1 12.8 0.1 6.0 5 0 0 5 5 5 4 SdrD B-like domain CarbopepD_reg_2 PF13715.6 CQR51520.1 - 9.1e-08 32.0 15.9 0.019 14.9 0.4 4.8 4 0 0 4 4 4 3 CarboxypepD_reg-like domain Lyase_catalyt PF09093.11 CQR51520.1 - 0.0081 15.3 0.1 0.016 14.4 0.1 1.4 1 0 0 1 1 1 1 Lyase, catalytic BPD_transp_1 PF00528.22 CQR51521.1 - 1.2e-16 61.0 10.6 1.2e-16 61.0 10.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51522.1 - 1.3e-14 54.3 20.8 3.9e-14 52.8 20.8 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Ycf70 PF17382.2 CQR51522.1 - 0.064 13.7 0.6 1 9.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized Ycf70-like DctQ PF04290.12 CQR51522.1 - 7.1 6.5 14.1 0.78 9.7 0.7 3.3 2 1 1 3 3 3 0 Tripartite ATP-independent periplasmic transporters, DctQ component SBP_bac_8 PF13416.6 CQR51523.1 - 3.5e-42 145.2 0.9 3.5e-42 145.2 0.9 2.2 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR51524.1 - 1.4e-19 70.1 1.4 1.4e-19 70.1 1.4 2.7 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR51524.1 - 2.6e-10 40.5 0.0 4.9e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR51524.1 - 6.9e-08 33.0 0.0 1.4e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR51524.1 - 0.064 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF948 PF06103.11 CQR51524.1 - 0.13 12.5 0.1 0.31 11.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Response_reg PF00072.24 CQR51525.1 - 2.9e-25 88.6 0.0 7.9e-25 87.2 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR51525.1 - 3.2e-20 71.7 0.5 2.9e-11 43.2 0.8 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR51525.1 - 3.6e-20 72.0 0.2 1.8e-19 69.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR51525.1 - 0.0003 21.0 0.7 0.00073 19.8 0.4 1.8 2 0 0 2 2 2 1 GGDEF-like domain Ku_PK_bind PF08785.11 CQR51525.1 - 0.09 12.9 0.2 0.4 10.8 0.2 2.2 1 0 0 1 1 1 0 Ku C terminal domain like Lzipper-MIP1 PF14389.6 CQR51525.1 - 0.14 12.5 0.6 0.48 10.7 0.1 2.2 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Glyco_hydro_3 PF00933.21 CQR51526.1 - 2.5e-62 211.1 0.0 3.3e-62 210.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain A_deaminase PF00962.22 CQR51527.1 - 3.8e-31 108.6 0.0 8.2e-31 107.5 0.0 1.5 2 0 0 2 2 2 1 Adenosine/AMP deaminase YgbA_NO PF11756.8 CQR51528.1 - 1.3e-39 134.9 7.4 1.5e-39 134.6 7.4 1.0 1 0 0 1 1 1 1 Nitrous oxide-stimulated promoter ABC_tran PF00005.27 CQR51529.1 - 5.8e-14 52.8 0.0 7.3e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter DUF815 PF05673.13 CQR51529.1 - 0.0045 16.2 0.0 0.0055 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_29 PF13555.6 CQR51529.1 - 0.034 13.9 0.1 0.074 12.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ACD PF16671.5 CQR51529.1 - 0.04 12.2 0.0 0.044 12.1 0.0 1.1 1 0 0 1 1 1 0 Actin cross-linking domain AAA_21 PF13304.6 CQR51529.1 - 0.047 13.5 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR51529.1 - 0.055 12.9 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 CQR51529.1 - 0.084 13.0 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase Helicase_RecD PF05127.14 CQR51529.1 - 0.085 12.7 0.0 0.099 12.5 0.0 1.1 1 0 0 1 1 1 0 Helicase ATPase PF06745.13 CQR51529.1 - 0.089 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 KaiC RsgA_GTPase PF03193.16 CQR51529.1 - 0.15 11.9 0.2 0.31 10.9 0.1 1.5 1 1 1 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 CQR51529.1 - 0.21 12.1 1.3 0.29 11.6 0.3 1.6 1 1 1 2 2 2 0 AAA domain OrfB_IS605 PF01385.19 CQR51530.1 - 2.8e-29 101.8 1.7 7.2e-29 100.5 1.7 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR51530.1 - 1.4e-23 82.5 0.7 3.1e-23 81.5 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR51530.1 - 2.9e-23 81.1 1.9 7.3e-23 79.8 1.9 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L32e PF01655.18 CQR51530.1 - 0.014 15.8 5.0 0.033 14.6 5.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L32 zf-RanBP PF00641.18 CQR51530.1 - 2.3 7.6 7.4 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF444 PF04285.12 CQR51531.1 - 2e-105 353.3 2.1 3e-104 349.5 2.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF444) NUDIX_2 PF13869.6 CQR51531.1 - 0.19 11.3 0.2 0.96 9.0 0.0 1.9 2 0 0 2 2 2 0 Nucleotide hydrolase SpoVR PF04293.13 CQR51532.1 - 3.2e-124 414.8 5.0 7.7e-64 215.9 0.0 2.7 1 1 1 2 2 2 2 SpoVR like protein Img2 PF05046.14 CQR51532.1 - 0.051 13.9 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) MaoC_dehydratas PF01575.19 CQR51533.1 - 3.7e-27 94.3 0.1 4.7e-27 94.0 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 CQR51533.1 - 1.6e-10 41.2 0.1 2.2e-10 40.7 0.1 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase Deltameth_res PF16020.5 CQR51533.1 - 0.014 15.2 0.1 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Deltamethrin resistance CheY-binding PF09078.11 CQR51533.1 - 0.06 13.5 0.2 12 6.1 0.0 2.3 2 0 0 2 2 2 0 CheY binding HTH_18 PF12833.7 CQR51534.1 - 9.1e-22 77.1 0.3 1.9e-21 76.1 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51534.1 - 9.1e-20 70.3 0.1 6.5e-09 35.7 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR51534.1 - 4.7e-11 42.7 5.5 1.2e-10 41.5 5.5 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR51534.1 - 9.5e-08 31.6 0.1 1.9e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Cupin domain BAG PF02179.16 CQR51534.1 - 0.014 15.9 0.1 0.022 15.2 0.1 1.4 1 0 0 1 1 1 0 BAG domain ARD PF03079.14 CQR51534.1 - 0.028 14.6 0.1 0.049 13.8 0.1 1.3 1 0 0 1 1 1 0 ARD/ARD' family DMSP_lyase PF16867.5 CQR51534.1 - 0.15 11.7 0.3 0.33 10.6 0.3 1.5 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase GFO_IDH_MocA PF01408.22 CQR51535.1 - 1e-17 65.1 0.0 1.6e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR51535.1 - 1e-17 64.2 0.1 2.1e-17 63.2 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR51535.1 - 0.14 12.8 0.0 0.23 12.1 0.0 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PadR PF03551.14 CQR51536.1 - 1.6e-10 40.8 0.2 7.4e-10 38.7 0.2 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR51536.1 - 0.0028 17.8 0.1 0.0097 16.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.6 CQR51536.1 - 0.017 15.6 0.0 0.99 9.9 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HxlR PF01638.17 CQR51536.1 - 0.023 14.5 0.2 0.09 12.6 0.0 2.1 2 1 0 2 2 2 0 HxlR-like helix-turn-helix TrmB PF01978.19 CQR51536.1 - 0.027 14.4 0.2 0.93 9.4 0.1 2.9 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB F-112 PF09645.10 CQR51536.1 - 0.033 14.3 1.7 0.042 14.0 1.2 1.6 1 1 0 1 1 1 0 F-112 protein MFS_1 PF07690.16 CQR51537.1 - 9.7e-66 222.1 43.4 8.7e-42 143.3 23.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR51537.1 - 1.5e-15 57.0 19.2 4.9e-07 28.9 2.9 3.1 1 1 2 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 CQR51537.1 - 3.8e-15 55.7 25.4 2.3e-11 43.2 7.0 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.6 CQR51537.1 - 3.4e-14 52.2 19.4 6.8e-09 34.8 7.0 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein LacY_symp PF01306.19 CQR51537.1 - 2.5e-11 43.0 9.9 1.6e-06 27.1 0.6 3.0 2 1 0 3 3 3 3 LacY proton/sugar symporter MFS_3 PF05977.13 CQR51537.1 - 8.3e-11 41.0 18.8 8.9e-10 37.6 18.8 1.9 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_4 PF06779.14 CQR51537.1 - 1.4e-06 27.9 25.2 6e-06 25.8 25.2 1.9 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB UNC-93 PF05978.16 CQR51537.1 - 0.04 13.6 0.6 0.04 13.6 0.6 2.3 2 1 1 3 3 3 0 Ion channel regulatory protein UNC-93 Nuc_H_symport PF03825.16 CQR51537.1 - 1.6 7.6 14.4 1.2 8.0 9.6 2.5 2 1 0 2 2 2 0 Nucleoside H+ symporter OATP PF03137.20 CQR51537.1 - 3.7 5.7 16.3 0.15 10.3 0.2 3.3 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family MatE PF01554.18 CQR51538.1 - 1.6e-37 128.6 39.1 1.6e-19 70.1 11.4 2.3 2 0 0 2 2 2 2 MatE HTH_3 PF01381.22 CQR51539.1 - 1.6e-12 47.3 0.0 6.3e-12 45.4 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 CQR51539.1 - 1.1e-08 34.9 0.0 3.2e-08 33.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR51539.1 - 2.7e-08 34.0 0.0 8.9e-08 32.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 CQR51539.1 - 0.00037 20.3 0.0 0.0012 18.7 0.0 1.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 CQR51539.1 - 0.00097 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_26 PF13443.6 CQR51539.1 - 0.0011 19.3 0.1 0.0027 18.1 0.1 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 CQR51539.1 - 0.0011 19.0 0.0 0.0023 18.0 0.0 1.5 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_11 PF08279.12 CQR51539.1 - 0.0031 17.4 0.2 0.0076 16.2 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR51539.1 - 0.0057 16.2 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 CQR51539.1 - 0.0061 16.3 0.1 0.054 13.3 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.16 CQR51539.1 - 0.011 15.2 0.0 0.038 13.5 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.6 CQR51539.1 - 0.018 15.0 0.3 0.053 13.5 0.3 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 CQR51539.1 - 0.028 14.2 0.1 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR51539.1 - 0.031 13.9 0.1 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.6 CQR51539.1 - 0.085 13.0 0.1 0.26 11.5 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR51539.1 - 0.1 12.5 0.3 0.63 9.9 0.3 2.4 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_25 PF13413.6 CQR51539.1 - 0.14 12.1 0.2 0.34 10.8 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 CQR51539.1 - 0.16 11.9 0.4 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_18 PF12833.7 CQR51540.1 - 4.6e-20 71.7 0.5 7.5e-20 71.0 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51540.1 - 2.7e-14 52.8 0.6 1.7e-07 31.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cass2 PF14526.6 CQR51540.1 - 0.00034 20.8 0.2 0.00063 19.9 0.2 1.5 1 1 0 1 1 1 1 Integron-associated effector binding protein GyrI-like PF06445.15 CQR51540.1 - 0.011 16.1 0.0 0.019 15.3 0.0 1.5 1 1 0 1 1 1 0 GyrI-like small molecule binding domain LSM PF01423.22 CQR51541.1 - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 LSM domain LysM PF01476.20 CQR51542.1 - 5.2e-25 87.2 0.0 4.8e-13 48.9 0.0 2.4 2 0 0 2 2 2 2 LysM domain Glyco_hydro_18 PF00704.28 CQR51542.1 - 1.9e-22 80.4 0.0 2.3e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 Guanylate_kin PF00625.21 CQR51543.1 - 2.9e-18 66.2 0.2 3.7e-18 65.8 0.2 1.1 1 0 0 1 1 1 1 Guanylate kinase AAA_18 PF13238.6 CQR51543.1 - 0.01 16.4 0.0 0.02 15.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR51543.1 - 0.034 14.4 0.1 0.09 13.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Glyco_hydro_3 PF00933.21 CQR51544.1 - 6.8e-60 203.1 0.0 1.2e-59 202.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR51544.1 - 4.7e-42 144.3 0.0 1.1e-41 143.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 CQR51544.1 - 4.6e-18 65.1 0.1 1.8e-17 63.2 0.1 2.1 1 0 0 1 1 1 1 Fibronectin type III-like domain SNARE_assoc PF09335.11 CQR51545.1 - 0.0069 16.9 1.1 0.0077 16.7 1.1 1.1 1 0 0 1 1 1 1 SNARE associated Golgi protein PTPLA PF04387.14 CQR51545.1 - 0.0095 15.7 2.0 0.011 15.5 2.0 1.3 1 1 0 1 1 1 1 Protein tyrosine phosphatase-like protein, PTPLA Holin_SPP1 PF04688.13 CQR51545.1 - 0.12 12.6 0.9 0.14 12.3 0.9 1.2 1 0 0 1 1 1 0 SPP1 phage holin LapA_dom PF06305.11 CQR51545.1 - 0.12 12.2 0.2 0.12 12.2 0.2 1.7 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain HHH_3 PF12836.7 CQR51546.1 - 1e-06 28.9 0.0 2.1e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.21 CQR51546.1 - 1.1e-06 29.1 0.0 1.9e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR51546.1 - 0.00062 20.1 0.0 0.0011 19.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH_5 PF14520.6 CQR51546.1 - 0.0045 17.6 0.0 0.012 16.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 CQR51546.1 - 0.0073 16.1 0.2 0.028 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 CQR51546.1 - 0.13 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4130 PF13566.6 CQR51547.1 - 1.9e-43 148.0 0.0 2.4e-43 147.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 PDDEXK_2 PF12784.7 CQR51549.1 - 1.2e-68 231.1 2.1 1.4e-68 230.9 2.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase DUF2802 PF10975.8 CQR51549.1 - 0.081 13.1 1.2 0.18 11.9 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) XFP_N PF09364.10 CQR51550.1 - 1.9e-180 599.5 0.0 2.6e-180 599.0 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain XFP_C PF09363.10 CQR51550.1 - 1.4e-82 276.1 0.0 1.9e-82 275.6 0.0 1.2 1 0 0 1 1 1 1 XFP C-terminal domain XFP PF03894.15 CQR51550.1 - 1.9e-80 268.7 0.0 7.5e-80 266.8 0.0 1.9 2 0 0 2 2 2 1 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Transket_pyr PF02779.24 CQR51550.1 - 6.8e-06 25.9 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain UTRA PF07702.13 CQR51551.1 - 1.4e-28 99.5 0.0 1.8e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 CQR51551.1 - 5.7e-13 48.3 0.0 2.4e-12 46.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_54 PF18607.1 CQR51551.1 - 0.0034 17.4 0.0 0.0066 16.5 0.0 1.4 1 0 0 1 1 1 1 ParA helix turn helix domain TrmB PF01978.19 CQR51551.1 - 0.023 14.6 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 CQR51551.1 - 0.044 13.7 0.0 0.089 12.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 CQR51551.1 - 0.054 13.2 0.0 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_CodY PF08222.11 CQR51551.1 - 0.16 11.6 0.1 0.75 9.4 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR51551.1 - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SBP_bac_1 PF01547.25 CQR51552.1 - 3.7e-27 96.1 7.4 5.5e-27 95.5 7.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR51552.1 - 2.7e-26 93.1 5.7 3.5e-26 92.7 5.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR51553.1 - 1.9e-21 76.1 1.3 1.9e-21 76.1 1.3 2.3 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR51553.1 - 2.5e-07 31.0 0.0 1.6e-06 28.4 0.0 2.1 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR51553.1 - 4.5e-06 27.1 0.0 1.4e-05 25.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GFRP PF06399.13 CQR51553.1 - 0.017 15.0 0.0 0.05 13.5 0.0 1.7 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) CHASE7 PF17151.4 CQR51553.1 - 0.59 9.7 5.7 0.29 10.7 0.6 2.4 2 0 0 2 2 2 0 Periplasmic sensor domain NYD-SP28 PF14772.6 CQR51553.1 - 3.7 7.7 5.7 0.43 10.7 1.0 2.0 2 0 0 2 2 2 0 Sperm tail Response_reg PF00072.24 CQR51554.1 - 9.2e-24 83.8 0.0 2e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR51554.1 - 1.9e-18 66.5 0.0 3.9e-18 65.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51554.1 - 3.8e-11 42.8 0.3 4e-06 26.8 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family FokI_C PF02980.16 CQR51554.1 - 0.02 14.9 0.0 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 Restriction endonuclease FokI, catalytic domain Ins_allergen_rp PF06757.13 CQR51554.1 - 0.047 13.7 0.6 9.7 6.1 0.0 2.6 2 1 1 3 3 3 0 Insect allergen related repeat, nitrile-specifier detoxification BPD_transp_1 PF00528.22 CQR51555.1 - 1.7e-20 73.5 20.1 1.7e-20 73.5 20.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51556.1 - 1.2e-20 74.1 13.9 1.2e-20 74.1 13.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2157 PF09925.9 CQR51556.1 - 0.91 9.3 11.1 0.58 9.9 0.1 3.0 3 1 0 3 3 3 0 Predicted membrane protein (DUF2157) DUF2621 PF11084.8 CQR51556.1 - 1.5 8.8 4.3 0.43 10.5 1.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2621) HATPase_c PF02518.26 CQR51557.1 - 2.8e-41 140.5 0.2 2.2e-27 95.7 0.0 2.6 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR51557.1 - 1e-28 99.7 0.2 2e-28 98.8 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain His_kinase PF06580.13 CQR51557.1 - 2.2e-22 79.2 1.1 5.3e-22 77.9 0.3 2.1 2 0 0 2 2 2 1 Histidine kinase HisKA PF00512.25 CQR51557.1 - 7e-11 42.0 0.4 1.9e-10 40.6 0.2 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR51557.1 - 6.3e-09 35.8 0.0 0.00093 19.0 0.0 2.4 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7TMR-DISM_7TM PF07695.11 CQR51557.1 - 2.8e-08 33.9 29.6 6.1e-08 32.8 29.6 1.5 1 0 0 1 1 1 1 7TM diverse intracellular signalling HATPase_c_2 PF13581.6 CQR51557.1 - 0.0013 18.7 0.0 0.045 13.7 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Response_reg PF00072.24 CQR51558.1 - 1.4e-20 73.5 0.2 2.5e-20 72.7 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR51558.1 - 2.2e-08 34.1 0.3 9.7e-08 32.0 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal BTAD PF03704.17 CQR51558.1 - 1.6e-06 28.6 0.2 3.4e-06 27.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial transcriptional activator domain SLH PF00395.20 CQR51559.1 - 5.5e-35 119.1 7.6 8.5e-12 44.9 0.0 5.0 5 0 0 5 5 5 4 S-layer homology domain Cadherin-like PF12733.7 CQR51559.1 - 7.2e-10 39.3 0.2 5.5e-08 33.2 0.0 3.9 2 1 2 4 4 4 1 Cadherin-like beta sandwich domain SWM_repeat PF13753.6 CQR51559.1 - 5.9e-06 26.3 3.5 7.4e-06 26.0 1.0 2.6 2 0 0 2 2 2 1 Putative flagellar system-associated repeat FIVAR PF07554.13 CQR51559.1 - 0.0035 18.1 1.8 0.0038 17.9 0.1 2.0 2 0 0 2 2 2 1 FIVAR domain zf-HC2 PF13490.6 CQR51560.1 - 3.2e-09 36.9 8.1 4.8e-09 36.3 8.1 1.3 1 0 0 1 1 1 1 Putative zinc-finger She9_MDM33 PF05546.11 CQR51560.1 - 0.015 15.1 0.1 0.024 14.5 0.1 1.2 1 0 0 1 1 1 0 She9 / Mdm33 family RNA_pol_A_bac PF01000.26 CQR51560.1 - 0.029 14.8 0.0 0.17 12.2 0.0 2.2 2 1 0 2 2 2 0 RNA polymerase Rpb3/RpoA insert domain Bac_export_2 PF01312.19 CQR51560.1 - 0.047 12.9 0.1 0.063 12.5 0.1 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family Sigma70_r4_2 PF08281.12 CQR51561.1 - 4.2e-07 29.5 0.0 5.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR51561.1 - 3.1e-06 26.6 0.0 4.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR51562.1 - 0.001 18.8 0.0 0.004 16.9 0.0 2.0 3 0 0 3 3 3 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR51562.1 - 0.2 11.2 1.8 1 8.9 1.8 2.1 1 1 0 1 1 1 0 Sigma-70, region 4 adh_short PF00106.25 CQR51564.1 - 7.2e-46 156.1 0.0 9.8e-46 155.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR51564.1 - 9e-23 81.0 0.0 1.2e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR51564.1 - 8.4e-05 22.5 0.0 0.00013 21.9 0.0 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR51564.1 - 0.11 11.9 0.0 0.41 10.1 0.0 1.9 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family MerR_1 PF13411.6 CQR51565.1 - 1.1e-14 54.3 0.0 1.8e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR51565.1 - 4.1e-13 48.9 0.1 9.5e-13 47.7 0.1 1.6 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR51565.1 - 0.0028 18.2 0.2 0.0043 17.6 0.2 1.3 1 0 0 1 1 1 1 MerR, DNA binding MerR_2 PF13591.6 CQR51565.1 - 0.0037 17.1 0.1 0.0097 15.8 0.0 1.7 2 0 0 2 2 2 1 MerR HTH family regulatory protein STAT_int PF02865.17 CQR51565.1 - 0.0044 17.5 0.2 0.0057 17.1 0.2 1.2 1 0 0 1 1 1 1 STAT protein, protein interaction domain HTH_psq PF05225.16 CQR51565.1 - 0.0052 16.5 0.0 0.0099 15.6 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain AbiEi_4 PF13338.6 CQR51565.1 - 0.047 13.9 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_17 PF12728.7 CQR51565.1 - 0.084 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PDDEXK_2 PF12784.7 CQR51567.1 - 1.1e-05 25.1 0.1 1.2e-05 24.9 0.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase PDDEXK_2 PF12784.7 CQR51568.1 - 6.8e-72 241.7 0.3 7.9e-72 241.5 0.3 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase DUF2802 PF10975.8 CQR51568.1 - 0.058 13.5 1.6 0.28 11.4 1.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) CBM77 PF18283.1 CQR51569.1 - 9.6e-40 135.3 6.1 9.6e-40 135.3 6.1 2.9 2 1 1 3 3 3 1 Carbohydrate binding module 77 Pec_lyase_C PF00544.19 CQR51569.1 - 2.4e-25 89.4 5.0 2.4e-25 89.4 5.0 2.3 2 0 0 2 2 2 1 Pectate lyase DUF2057 PF09829.9 CQR51569.1 - 4.8 7.3 5.7 1.6e+02 2.4 4.1 3.5 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2057) SAP130_C PF16014.5 CQR51569.1 - 7.7 5.5 10.0 12 4.9 10.0 1.2 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP130 C-terminus MFS_1 PF07690.16 CQR51570.1 - 2.6e-43 148.3 43.3 2.6e-43 148.3 43.3 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily OATP PF03137.20 CQR51570.1 - 0.00049 18.5 13.0 0.01 14.2 0.8 3.4 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family DUF3180 PF11377.8 CQR51570.1 - 2.1 8.5 15.2 0.077 13.1 1.9 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3180) MerR_1 PF13411.6 CQR51571.1 - 2.9e-22 78.5 3.2 1.7e-13 50.4 0.8 2.5 2 0 0 2 2 2 2 MerR HTH family regulatory protein MerR PF00376.23 CQR51571.1 - 3.6e-16 58.6 0.5 4.3e-08 32.8 0.1 2.7 2 0 0 2 2 2 2 MerR family regulatory protein HTH_17 PF12728.7 CQR51571.1 - 4.1e-07 30.1 0.2 0.0051 17.0 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.6 CQR51571.1 - 0.0001 22.0 2.4 0.044 13.6 0.0 3.6 3 1 0 3 3 3 1 Homeodomain-like domain DUF2959 PF11172.8 CQR51571.1 - 0.0002 21.5 1.8 0.00028 21.1 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2959) HTH_3 PF01381.22 CQR51571.1 - 0.00063 19.7 0.0 0.52 10.4 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 CQR51571.1 - 0.00068 19.3 0.6 0.5 10.1 0.0 3.5 3 0 0 3 3 3 1 Sigma-70, region 4 Terminase_5 PF06056.12 CQR51571.1 - 0.00093 19.0 0.2 0.047 13.6 0.1 2.5 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) FCH PF00611.23 CQR51571.1 - 0.016 15.5 1.4 3.7 7.9 0.1 2.5 2 0 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain p31comet PF06581.12 CQR51571.1 - 0.074 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding HTH_29 PF13551.6 CQR51571.1 - 1.2 9.2 3.8 9.1 6.4 0.0 3.6 4 0 0 4 4 4 0 Winged helix-turn helix ABC2_membrane PF01061.24 CQR51572.1 - 1.3e-08 34.6 6.4 1.1e-06 28.2 1.4 2.5 1 1 2 3 3 3 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR51572.1 - 6.5e-05 22.2 10.7 0.0076 15.4 0.2 3.0 1 1 2 3 3 3 3 ABC-2 family transporter protein DUF3180 PF11377.8 CQR51572.1 - 0.048 13.8 0.7 0.091 12.9 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3180) AAA_21 PF13304.6 CQR51573.1 - 1.2e-06 28.6 0.1 3.2e-06 27.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 CQR51573.1 - 5.5e-05 23.7 0.2 0.00015 22.3 0.0 1.8 2 1 0 2 2 2 1 ABC transporter SMC_N PF02463.19 CQR51573.1 - 0.0099 15.3 0.0 0.032 13.7 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 CQR51573.1 - 0.016 15.4 0.0 0.76 10.1 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Glyco_hydro_2_C PF02836.17 CQR51573.1 - 0.14 11.2 0.0 0.16 11.0 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain OrfB_IS605 PF01385.19 CQR51574.1 - 1.3e-29 102.9 2.3 3.5e-29 101.5 2.3 1.8 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 CQR51574.1 - 2.8e-23 81.1 1.8 7.9e-23 79.7 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 CQR51574.1 - 1.4e-22 79.4 0.6 3e-22 78.3 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L32e PF01655.18 CQR51574.1 - 0.0093 16.4 3.7 0.022 15.2 3.7 1.7 1 0 0 1 1 1 1 Ribosomal protein L32 RuvC_1 PF18516.1 CQR51574.1 - 0.038 13.2 1.4 0.077 12.2 1.4 1.5 1 0 0 1 1 1 0 RuvC nuclease domain zf-ISL3 PF14690.6 CQR51574.1 - 8.4 7.2 7.5 18 6.1 0.4 3.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AAA_PrkA PF08298.11 CQR51575.1 - 1.2e-131 438.9 0.0 2e-131 438.1 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain PrkA PF06798.12 CQR51575.1 - 3e-87 292.5 4.1 5.9e-87 291.5 4.1 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain Sigma54_activat PF00158.26 CQR51575.1 - 0.014 15.1 0.0 0.04 13.6 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2508 PF10704.9 CQR51575.1 - 0.035 14.3 3.2 0.79 9.9 0.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2508) AAA_16 PF13191.6 CQR51575.1 - 0.058 13.8 0.1 0.2 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Phage_TAC_13 PF16459.5 CQR51576.1 - 0.079 13.4 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Phage tail assembly chaperone, TAC TetR_N PF00440.23 CQR51577.1 - 2.2e-17 62.6 0.0 3.8e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR51577.1 - 0.018 15.2 0.1 0.091 12.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_7 PF02796.15 CQR51577.1 - 0.021 14.9 0.0 0.048 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Isochorismatase PF00857.20 CQR51578.1 - 1.1e-32 113.6 0.0 1.3e-32 113.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AraC_N PF06719.13 CQR51579.1 - 3.1e-34 117.7 0.0 4.7e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus HTH_18 PF12833.7 CQR51579.1 - 2.5e-15 56.5 0.3 5.5e-15 55.4 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51579.1 - 2.4e-11 43.4 3.5 2.1e-07 30.9 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.23 CQR51579.1 - 0.02 14.7 0.2 4.6 7.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family Epimerase PF01370.21 CQR51580.1 - 2e-12 47.1 0.1 7.4e-12 45.2 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR51580.1 - 5.3e-09 36.2 2.9 8e-09 35.6 2.9 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR51580.1 - 6.5e-08 32.4 0.7 9.1e-08 31.9 0.7 1.2 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 CQR51580.1 - 3.3e-06 26.7 0.6 5e-06 26.1 0.1 1.6 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 CQR51580.1 - 1.8e-05 24.0 0.1 0.00038 19.6 0.1 2.5 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 CQR51580.1 - 5.6e-05 22.3 0.1 7.9e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 CQR51580.1 - 8.1e-05 22.9 0.7 0.00073 19.8 0.1 2.4 2 1 1 3 3 3 1 TrkA-N domain adh_short PF00106.25 CQR51580.1 - 0.00032 20.2 0.5 0.00071 19.1 0.5 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.12 CQR51580.1 - 0.00033 19.9 0.0 0.00053 19.2 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein AIRS_C PF02769.22 CQR51580.1 - 0.0036 17.4 0.0 0.0067 16.6 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain F420_oxidored PF03807.17 CQR51580.1 - 0.016 15.7 0.3 0.038 14.6 0.3 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 CQR51580.1 - 0.018 15.2 0.1 0.056 13.6 0.1 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus AAA_30 PF13604.6 CQR51580.1 - 0.056 13.2 1.4 1.3 8.8 0.2 2.3 2 1 0 2 2 2 0 AAA domain Sacchrp_dh_NADP PF03435.18 CQR51580.1 - 0.096 13.0 0.1 0.19 12.0 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 CQR51580.1 - 0.11 12.4 0.6 0.32 10.9 0.6 1.8 1 1 0 1 1 1 0 KR domain Polysacc_synt_2 PF02719.15 CQR51580.1 - 0.13 11.4 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Glyco_hydro_4 PF02056.16 CQR51581.1 - 2.2e-65 219.6 0.0 3.5e-65 219.0 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 CQR51581.1 - 1.9e-45 155.5 0.0 2.7e-45 155.0 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 CQR51581.1 - 0.068 13.3 0.0 0.55 10.3 0.0 2.2 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain BcrAD_BadFG PF01869.20 CQR51582.1 - 3e-25 89.2 0.1 4.4e-25 88.7 0.1 1.3 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 CQR51582.1 - 0.082 12.4 0.1 10 5.5 0.0 2.1 2 0 0 2 2 2 0 ROK family FGGY_N PF00370.21 CQR51582.1 - 0.097 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Peripla_BP_3 PF13377.6 CQR51583.1 - 1.4e-39 136.1 0.1 2.2e-39 135.4 0.1 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR51583.1 - 4.4e-30 105.1 0.0 5.8e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR51583.1 - 9.5e-17 60.5 0.2 2.1e-16 59.4 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR51583.1 - 1.6e-16 60.7 0.0 3.7e-16 59.5 0.0 1.7 2 1 0 2 2 2 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR51583.1 - 0.012 15.7 0.0 0.033 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Arginase PF00491.21 CQR51583.1 - 0.025 14.1 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Arginase family Crp PF00325.20 CQR51583.1 - 0.16 11.6 0.2 1.9 8.2 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family SBP_bac_1 PF01547.25 CQR51584.1 - 1.2e-37 130.5 8.9 1.8e-37 130.0 8.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR51584.1 - 1.5e-37 130.0 5.6 2e-37 129.6 5.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR51584.1 - 0.0018 18.0 0.0 0.97 9.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR51584.1 - 0.0022 17.5 0.2 1.9 7.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein LPAM_1 PF08139.12 CQR51584.1 - 2.3 8.9 4.2 6.5 7.5 4.2 1.8 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.22 CQR51585.1 - 1.1e-19 71.0 13.3 1.1e-19 71.0 13.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Xpo1 PF08389.12 CQR51585.1 - 0.25 11.4 0.9 22 5.1 0.2 2.4 2 0 0 2 2 2 0 Exportin 1-like protein OSTMP1 PF09777.9 CQR51585.1 - 0.26 10.6 0.2 0.61 9.4 0.2 1.5 1 0 0 1 1 1 0 Osteopetrosis-associated transmembrane protein 1 precursor BPD_transp_1 PF00528.22 CQR51586.1 - 2.7e-13 50.1 25.8 2.7e-13 50.1 25.8 1.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DHDPS PF00701.22 CQR51587.1 - 4.8e-59 199.4 0.0 5.4e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.6 CQR51587.1 - 0.015 14.7 0.1 0.023 14.1 0.1 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Aminotran_1_2 PF00155.21 CQR51588.1 - 1.5e-65 221.7 0.0 1.8e-65 221.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR51588.1 - 3.6e-05 23.2 0.0 6.6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 CQR51588.1 - 0.00032 20.1 0.0 0.00049 19.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 CQR51588.1 - 0.025 13.1 0.0 0.04 12.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 CQR51588.1 - 0.029 13.3 0.0 0.062 12.2 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-V OKR_DC_1 PF01276.20 CQR51588.1 - 0.14 10.9 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Tfb2_C PF18307.1 CQR51588.1 - 0.19 12.2 0.0 0.5 10.8 0.0 1.7 1 0 0 1 1 1 0 Transcription factor Tfb2 (p52) C-terminal domain Peptidase_M20 PF01546.28 CQR51589.1 - 3.3e-36 124.9 0.2 4.4e-36 124.5 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR51589.1 - 1.6e-20 73.0 0.0 3.5e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 CQR51589.1 - 2.4e-08 33.9 0.4 2.3e-07 30.7 0.5 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 CQR51589.1 - 0.032 13.3 0.2 1.4 7.9 0.0 2.4 2 1 0 3 3 3 0 M42 glutamyl aminopeptidase adh_short_C2 PF13561.6 CQR51590.1 - 3.9e-60 203.3 0.0 5.2e-60 202.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR51590.1 - 7.4e-43 146.3 0.0 9.4e-43 145.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR51590.1 - 1.6e-07 31.4 0.2 9.4e-07 28.9 0.1 1.9 2 0 0 2 2 2 1 KR domain NAD_Gly3P_dh_N PF01210.23 CQR51590.1 - 0.0099 15.9 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LytR_C PF13399.6 CQR51590.1 - 0.06 14.3 0.5 2 9.5 0.0 2.4 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator THF_DHG_CYH_C PF02882.19 CQR51590.1 - 0.12 11.7 0.0 0.49 9.7 0.0 1.8 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1776 PF08643.10 CQR51590.1 - 0.21 10.9 0.0 0.37 10.1 0.0 1.5 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) Peptidase_M24 PF00557.24 CQR51591.1 - 2e-34 119.1 0.2 2.5e-34 118.8 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 CQR51591.1 - 1.4e-18 67.8 0.0 2.3e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CN_hydrolase PF00795.22 CQR51592.1 - 1.2e-54 185.4 0.0 1.4e-54 185.2 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase ABC_tran PF00005.27 CQR51593.1 - 1.1e-36 126.4 0.0 1.4e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51593.1 - 2.9e-15 56.9 0.3 1.1e-08 35.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR51593.1 - 1e-10 41.4 0.0 2.7e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR51593.1 - 7.3e-06 26.5 0.1 1.7e-05 25.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR51593.1 - 3.5e-05 23.5 0.0 8.2e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR51593.1 - 0.00058 19.7 0.0 0.44 10.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 CQR51593.1 - 0.00063 20.0 0.8 0.0043 17.3 0.8 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR51593.1 - 0.0016 18.4 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 CQR51593.1 - 0.0021 18.6 0.0 0.0042 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR51593.1 - 0.0023 16.8 0.2 0.86 8.3 0.1 2.8 2 1 0 2 2 2 1 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 CQR51593.1 - 0.0027 17.5 0.1 0.11 12.2 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 CQR51593.1 - 0.0037 17.0 0.0 0.0081 15.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR51593.1 - 0.0043 17.2 0.1 0.01 16.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 CQR51593.1 - 0.0096 16.2 0.5 0.037 14.3 0.2 2.2 2 1 1 3 3 3 1 AAA domain SbcCD_C PF13558.6 CQR51593.1 - 0.013 15.7 0.4 0.19 12.0 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 CQR51593.1 - 0.014 15.1 0.0 0.048 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 CQR51593.1 - 0.014 14.0 0.0 0.73 8.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR51593.1 - 0.027 14.0 0.9 0.29 10.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 CQR51593.1 - 0.039 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 CQR51593.1 - 0.042 14.3 0.1 0.29 11.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 CQR51593.1 - 0.056 12.8 0.1 0.14 11.5 0.0 1.6 2 1 0 2 2 2 0 FtsK/SpoIIIE family AAA_18 PF13238.6 CQR51593.1 - 0.059 13.9 3.0 0.35 11.4 2.0 2.5 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR51593.1 - 0.065 13.3 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 CQR51593.1 - 0.094 12.1 0.0 0.34 10.3 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 CQR51593.1 - 0.11 12.4 0.0 0.52 10.2 0.0 1.9 1 1 1 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 CQR51593.1 - 0.12 12.2 0.1 0.18 11.7 0.1 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 CQR51593.1 - 0.54 9.9 2.7 0.54 10.0 0.2 2.1 1 1 1 2 2 2 0 Cytidylate kinase BPD_transp_1 PF00528.22 CQR51594.1 - 3.1e-27 95.5 13.5 3.7e-27 95.3 13.5 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SPC25 PF06703.11 CQR51594.1 - 0.11 12.3 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) SBP_bac_3 PF00497.20 CQR51595.1 - 3.7e-57 193.3 0.1 4.4e-57 193.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 CQR51595.1 - 1.3e-06 28.6 0.1 6.6e-06 26.3 0.1 2.0 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site OpuAC PF04069.12 CQR51595.1 - 0.002 17.8 0.1 0.079 12.5 0.1 2.2 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1 PF09084.11 CQR51595.1 - 0.047 13.6 0.1 0.19 11.7 0.0 1.8 1 1 1 2 2 2 0 NMT1/THI5 like DUF3558 PF12079.8 CQR51595.1 - 0.24 11.4 3.5 0.46 10.5 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) FCD PF07729.12 CQR51596.1 - 1.1e-22 80.7 2.5 1.8e-22 80.1 2.5 1.3 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR51596.1 - 7.4e-16 57.6 0.0 1.3e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 CQR51596.1 - 0.024 14.4 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_24 PF13412.6 CQR51596.1 - 0.028 14.0 0.0 0.076 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UreD PF01774.17 CQR51596.1 - 0.057 13.3 0.0 0.08 12.8 0.0 1.2 1 1 0 1 1 1 0 UreD urease accessory protein EFG_II PF14492.6 CQR51596.1 - 0.1 12.7 0.2 7.7 6.7 0.0 2.8 3 0 0 3 3 3 0 Elongation Factor G, domain II DUF4837 PF16125.5 CQR51596.1 - 0.11 11.5 0.2 0.16 10.9 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4837) MarR_2 PF12802.7 CQR51596.1 - 0.12 12.3 0.5 0.32 10.9 0.1 1.9 2 0 0 2 2 2 0 MarR family Fe_dep_repress PF01325.19 CQR51596.1 - 0.14 12.4 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MR_MLE_C PF13378.6 CQR51597.1 - 7.9e-49 166.2 2.4 1.1e-48 165.7 2.4 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 CQR51597.1 - 5.8e-17 62.0 0.0 1e-16 61.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 CQR51597.1 - 9.4e-07 28.2 0.2 1.5e-06 27.6 0.2 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus SWIM PF04434.17 CQR51598.1 - 0.00054 19.6 0.2 0.0011 18.6 0.2 1.5 1 0 0 1 1 1 1 SWIM zinc finger Fe_bilin_red PF05996.12 CQR51598.1 - 0.23 11.1 1.6 0.45 10.2 0.1 2.0 2 0 0 2 2 2 0 Ferredoxin-dependent bilin reductase PRK PF00485.18 CQR51599.1 - 2.5e-42 144.8 0.0 2.9e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 CQR51599.1 - 3.7e-08 34.0 0.0 5.3e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR51599.1 - 5.8e-05 23.3 0.0 7.8e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 CQR51599.1 - 0.00013 21.9 0.3 0.00077 19.4 0.4 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase CoaE PF01121.20 CQR51599.1 - 0.00033 20.4 3.8 0.012 15.3 0.3 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase Cytidylate_kin PF02224.18 CQR51599.1 - 0.00036 20.3 0.5 0.19 11.4 0.0 2.1 1 1 0 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 CQR51599.1 - 0.00047 20.6 1.6 0.77 10.2 0.1 2.2 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 CQR51599.1 - 0.00052 19.4 0.0 0.00096 18.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin T2SSE PF00437.20 CQR51599.1 - 0.0078 15.3 0.4 0.0078 15.3 0.4 1.8 2 1 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 CQR51599.1 - 0.013 15.9 0.0 0.042 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 CQR51599.1 - 0.016 15.1 0.0 0.021 14.7 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_26 PF13500.6 CQR51599.1 - 0.018 14.9 0.9 0.082 12.7 0.9 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 CQR51599.1 - 0.026 14.8 0.6 0.11 12.8 0.6 2.2 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 CQR51599.1 - 0.07 12.8 0.7 3.9 7.1 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase MobB PF03205.14 CQR51599.1 - 0.071 13.0 0.1 0.63 9.9 0.1 2.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 CQR51599.1 - 0.079 13.0 0.2 0.13 12.2 0.2 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF87 PF01935.17 CQR51599.1 - 0.093 12.8 0.8 0.22 11.6 0.3 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA PF00004.29 CQR51599.1 - 0.096 13.1 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 CQR51599.1 - 0.099 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin2 PF13189.6 CQR51599.1 - 0.099 12.8 0.8 0.25 11.5 0.8 1.7 1 1 0 1 1 1 0 Cytidylate kinase-like family ABC_tran PF00005.27 CQR51599.1 - 0.11 13.0 0.6 0.16 12.5 0.6 1.6 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.12 CQR51599.1 - 0.11 12.4 0.2 0.21 11.5 0.2 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 CQR51599.1 - 0.13 11.4 0.5 0.22 10.7 0.5 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 CQR51599.1 - 0.16 12.3 0.6 0.25 11.7 0.5 1.6 1 1 0 1 1 1 0 AAA domain Tubulin PF00091.25 CQR51599.1 - 0.17 12.1 0.2 0.44 10.7 0.1 1.7 2 0 0 2 2 2 0 Tubulin/FtsZ family, GTPase domain NTPase_1 PF03266.15 CQR51599.1 - 0.44 10.4 1.9 0.58 10.1 0.5 1.9 2 1 0 2 2 2 0 NTPase Beta_elim_lyase PF01212.21 CQR51600.1 - 3.2e-33 115.2 0.0 4.3e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 CQR51600.1 - 0.00043 19.7 0.3 0.0037 16.6 0.0 2.3 3 0 0 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 CQR51600.1 - 0.035 13.3 0.0 0.065 12.4 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class I and II Glycos_transf_2 PF00535.26 CQR51601.1 - 2.8e-25 89.1 0.0 4.7e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR51601.1 - 4.2e-13 49.7 0.0 5.7e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR51601.1 - 7.9e-06 26.3 0.3 3e-05 24.4 0.0 2.1 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR51601.1 - 0.00013 21.6 0.1 0.00021 20.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF5085 PF16895.5 CQR51601.1 - 0.097 13.0 1.8 0.18 12.1 1.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5085) NfrA_C PF13283.6 CQR51601.1 - 0.19 11.2 1.0 0.56 9.7 0.3 2.0 1 1 1 2 2 2 0 Bacteriophage N adsorption protein A C-term Polysacc_synt_C PF14667.6 CQR51602.1 - 0.0001 22.4 17.6 0.0001 22.4 17.6 5.0 2 2 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain PS_pyruv_trans PF04230.13 CQR51603.1 - 1.5e-35 123.5 0.4 1.9e-35 123.2 0.4 1.1 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Glycos_transf_2 PF00535.26 CQR51604.1 - 7.2e-28 97.5 0.0 1.1e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR51604.1 - 1.2e-16 61.3 0.0 1.9e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR51604.1 - 4e-12 46.2 0.0 9.3e-12 45.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR51604.1 - 0.0031 18.0 0.0 0.0066 16.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 CQR51605.1 - 6.2e-16 58.7 0.0 1.1e-15 57.9 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR51605.1 - 9.4e-07 28.9 0.0 1.7e-06 28.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 CQR51605.1 - 0.00037 20.5 0.0 0.0014 18.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_8 PF01501.20 CQR51605.1 - 0.00096 18.8 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 8 Glyco_transf_21 PF13506.6 CQR51605.1 - 0.0012 18.4 0.0 0.0028 17.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Cadherin-like PF12733.7 CQR51606.1 - 6.3e-123 401.6 80.8 5.7e-16 58.8 3.9 11.9 11 1 0 11 11 11 10 Cadherin-like beta sandwich domain SLH PF00395.20 CQR51606.1 - 4.3e-38 129.1 4.5 1e-14 54.2 0.2 4.2 4 0 0 4 4 4 3 S-layer homology domain Laminin_G_3 PF13385.6 CQR51606.1 - 3.4e-24 85.7 1.9 3.4e-24 85.7 1.9 3.2 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily PT PF04886.12 CQR51606.1 - 2.4e-08 33.4 143.4 1.8e+04 -82.1 143.4 5.9 1 1 0 1 1 1 0 PT repeat Cadherin_5 PF17892.1 CQR51606.1 - 0.0013 18.7 0.2 0.0013 18.7 0.2 5.5 5 1 1 6 6 6 1 Cadherin-like domain Aldose_epim PF01263.20 CQR51607.1 - 1.8e-30 106.3 0.0 2.6e-30 105.8 0.0 1.2 1 0 0 1 1 1 1 Aldose 1-epimerase Peptidase_M20 PF01546.28 CQR51608.1 - 2.9e-31 108.8 0.3 4.8e-31 108.1 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 CQR51608.1 - 1.7e-05 24.6 0.0 2.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 CQR51608.1 - 0.00032 20.6 0.0 0.0011 18.9 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain AlaDh_PNT_C PF01262.21 CQR51609.1 - 1.3e-82 276.2 7.3 2e-82 275.6 7.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 CQR51609.1 - 1.9e-45 154.5 0.4 5.6e-45 153.0 0.0 2.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 CQR51609.1 - 6.4e-07 28.9 0.6 1.5e-06 27.7 0.3 1.7 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 CQR51609.1 - 1.8e-05 24.8 0.1 3.8e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.27 CQR51609.1 - 3.7e-05 24.2 1.8 6.6e-05 23.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 CQR51609.1 - 7.8e-05 22.9 0.8 0.00019 21.7 0.8 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 CQR51609.1 - 0.0001 21.7 0.1 0.00022 20.6 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 CQR51609.1 - 0.0007 19.5 0.9 0.0018 18.2 0.8 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 CQR51609.1 - 0.00075 20.0 1.4 0.0019 18.7 1.4 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 CQR51609.1 - 0.0012 18.2 3.5 0.013 14.8 3.2 2.6 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ADH_zinc_N PF00107.26 CQR51609.1 - 0.0021 18.0 0.4 0.0065 16.5 0.4 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_7 PF13241.6 CQR51609.1 - 0.0074 16.7 0.2 0.015 15.7 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 CQR51609.1 - 0.013 15.1 1.2 0.038 13.6 1.2 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HTH_30 PF13556.6 CQR51610.1 - 4.2e-18 64.9 1.3 9.3e-18 63.8 1.3 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GGDEF_2 PF17853.1 CQR51610.1 - 7.6e-09 35.8 0.1 2e-08 34.5 0.1 1.7 2 0 0 2 2 2 1 GGDEF-like domain HTH_8 PF02954.19 CQR51610.1 - 0.0046 16.7 0.1 0.01 15.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family DUF2089 PF09862.9 CQR51610.1 - 0.021 14.8 0.1 0.054 13.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) DUF2575 PF10837.8 CQR51611.1 - 0.12 12.7 0.2 0.3 11.4 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2575) SASP PF00269.20 CQR51612.1 - 1.5e-17 63.3 1.3 4.1e-17 62.0 1.3 1.8 1 1 0 1 1 1 1 Small, acid-soluble spore proteins, alpha/beta type Response_reg PF00072.24 CQR51613.1 - 5.2e-25 87.8 0.0 1.1e-24 86.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR51613.1 - 3.4e-16 59.3 0.0 9e-16 57.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51613.1 - 2.5e-13 49.7 0.0 1e-05 25.5 0.0 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR51613.1 - 5.6e-08 33.0 0.0 1.3e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 GGDEF-like domain TERB2 PF15101.6 CQR51613.1 - 0.16 12.0 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Telomere-associated protein TERB2 His_kinase PF06580.13 CQR51614.1 - 1.5e-28 98.9 0.4 4.4e-28 97.4 0.4 1.9 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR51614.1 - 5.1e-17 62.5 1.0 5.1e-17 62.5 1.0 1.7 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR51614.1 - 5.2e-05 23.7 0.0 0.00013 22.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TetR_C_17 PF17922.1 CQR51614.1 - 0.00035 20.6 0.1 0.0023 18.0 0.3 2.1 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HATPase_c_2 PF13581.6 CQR51614.1 - 0.00075 19.5 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cache_3-Cache_2 PF17201.4 CQR51614.1 - 0.0073 15.6 0.1 0.077 12.3 0.0 2.2 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain ACR_tran PF00873.19 CQR51614.1 - 0.046 11.4 0.6 0.069 10.8 0.1 1.4 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family HAMP PF00672.25 CQR51614.1 - 0.071 13.5 0.0 0.18 12.2 0.0 1.8 1 0 0 1 1 1 0 HAMP domain NYD-SP28_assoc PF14775.6 CQR51614.1 - 0.55 10.4 3.9 0.35 11.0 1.7 1.9 2 0 0 2 2 2 0 Sperm tail C-terminal domain OrfB_Zn_ribbon PF07282.11 CQR51615.1 - 8.3e-24 83.3 0.9 1.7e-23 82.3 0.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 CQR51615.1 - 5.6e-08 33.0 1.1 1.2e-07 32.0 1.1 1.5 1 0 0 1 1 1 1 Probable transposase SBP_bac_1 PF01547.25 CQR51616.1 - 9.5e-28 98.1 2.0 1.3e-27 97.6 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR51616.1 - 1.1e-26 94.3 0.1 1.4e-26 93.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR51616.1 - 0.0022 17.4 0.0 0.0092 15.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR51616.1 - 0.0039 17.0 0.0 0.011 15.5 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Collagen PF01391.18 CQR51617.1 - 2.6e-81 267.3 256.6 4.6e-08 32.7 20.7 11.0 1 1 3 4 4 4 3 Collagen triple helix repeat (20 copies) C1q PF00386.21 CQR51617.1 - 0.05 13.8 0.0 0.088 13.0 0.0 1.3 1 0 0 1 1 1 0 C1q domain BPD_transp_1 PF00528.22 CQR51618.1 - 5.9e-16 58.7 15.8 5.9e-16 58.7 15.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51619.1 - 2.2e-13 50.4 11.3 2.2e-13 50.4 11.3 2.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3502 PF12010.8 CQR51620.1 - 7.9e-40 136.5 2.5 1e-39 136.1 0.2 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF3502) SBP_bac_1 PF01547.25 CQR51620.1 - 7.6e-12 45.8 8.3 1.4e-11 45.0 8.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein CBM-like PF14683.6 CQR51621.1 - 1.2e-10 41.5 0.6 2.6e-07 30.7 0.1 2.8 2 0 0 2 2 2 2 Polysaccharide lyase family 4, domain III DUF5010_C PF18099.1 CQR51621.1 - 6.3e-07 29.5 1.6 1.3e-05 25.3 0.2 3.2 3 0 0 3 3 3 1 DUF5010 C-terminal domain RGI_lyase PF18370.1 CQR51621.1 - 0.00016 21.9 0.5 0.0056 17.0 0.4 2.8 2 0 0 2 2 2 1 Rhamnogalacturonan I lyases beta-sheet domain CE2_N PF17996.1 CQR51621.1 - 0.00076 19.5 0.0 0.0093 15.9 0.0 2.8 2 0 0 2 2 2 1 Carbohydrate esterase 2 N-terminal fn3 PF00041.21 CQR51621.1 - 0.0011 19.3 1.7 0.0038 17.5 1.7 2.1 1 0 0 1 1 1 1 Fibronectin type III domain CBM_35 PF16990.5 CQR51621.1 - 0.0023 18.2 4.0 0.0092 16.2 0.5 3.6 5 0 0 5 5 5 1 Carbohydrate binding module (family 35) Endotoxin_C PF03944.14 CQR51621.1 - 0.0093 16.3 0.8 0.036 14.4 0.8 2.0 1 0 0 1 1 1 1 delta endotoxin Glyco_hydro_3 PF00933.21 CQR51622.1 - 4.8e-61 206.9 0.0 6e-61 206.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR51622.1 - 0.007 16.3 0.1 1.2 9.0 0.1 2.3 2 0 0 2 2 2 2 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_88 PF07470.13 CQR51623.1 - 7.7e-66 222.5 0.0 9.2e-66 222.2 0.0 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 GTP-bdg_N PF13167.6 CQR51625.1 - 5.2e-31 107.2 1.5 1.4e-30 105.8 0.0 2.4 3 0 0 3 3 2 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 CQR51625.1 - 1.8e-26 92.6 12.2 3.5e-26 91.6 12.2 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 CQR51625.1 - 3.6e-16 59.3 0.0 7.8e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 CQR51625.1 - 0.00033 20.3 0.4 0.03 13.9 0.1 2.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 CQR51625.1 - 0.0026 18.3 0.0 0.0074 16.8 0.0 1.7 1 1 0 1 1 1 1 ABC transporter DUF815 PF05673.13 CQR51625.1 - 0.019 14.1 0.1 0.084 12.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RsgA_GTPase PF03193.16 CQR51625.1 - 0.035 14.0 0.2 0.26 11.2 0.1 2.4 1 1 1 2 2 2 0 RsgA GTPase Gtr1_RagA PF04670.12 CQR51625.1 - 0.04 13.3 0.0 0.08 12.3 0.0 1.5 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 CQR51625.1 - 0.041 13.4 1.3 0.12 11.9 0.2 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B GBP PF02263.19 CQR51625.1 - 0.042 13.1 0.4 0.1 11.8 0.0 1.8 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_16 PF13191.6 CQR51625.1 - 0.048 14.0 0.2 0.33 11.3 0.0 2.3 1 1 2 3 3 3 0 AAA ATPase domain Dynamin_N PF00350.23 CQR51625.1 - 0.063 13.3 0.1 0.66 10.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Roc PF08477.13 CQR51625.1 - 0.082 13.1 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Lzipper-MIP1 PF14389.6 CQR51625.1 - 1.2 9.5 6.2 11 6.4 0.0 3.4 3 1 0 4 4 4 0 Leucine-zipper of ternary complex factor MIP1 SNF2_N PF00176.23 CQR51627.1 - 5.3e-60 203.0 0.0 8.1e-60 202.4 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.8 CQR51627.1 - 1.8e-37 128.3 2.2 4.4e-37 127.0 2.2 1.7 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.31 CQR51627.1 - 1.8e-15 57.2 0.0 3.7e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD_2 PF06733.15 CQR51627.1 - 0.12 12.0 0.0 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 DEAD_2 SWI2_SNF2 PF18766.1 CQR51627.1 - 0.18 11.4 0.0 0.37 10.4 0.0 1.5 1 0 0 1 1 1 0 SWI2/SNF2 ATPase SWIM PF04434.17 CQR51628.1 - 3e-05 23.6 0.3 5.6e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 SWIM zinc finger MdcG PF10620.9 CQR51628.1 - 0.17 11.7 2.9 0.37 10.6 2.9 1.5 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG HTH_18 PF12833.7 CQR51629.1 - 1.3e-20 73.4 0.0 2.8e-20 72.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51629.1 - 2.3e-14 53.1 0.0 2.8e-07 30.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR51629.1 - 1.7e-08 34.8 0.2 5e-08 33.2 0.2 1.8 1 0 0 1 1 1 1 GGDEF-like domain dCache_1 PF02743.18 CQR51629.1 - 1.2e-07 31.8 0.0 2.6e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 Cache domain TctC PF03401.14 CQR51630.1 - 2.4e-53 181.0 0.0 2.9e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor KdgT PF03812.13 CQR51631.1 - 1.7e-113 379.0 27.5 2e-113 378.8 27.5 1.0 1 0 0 1 1 1 1 2-keto-3-deoxygluconate permease Ada_Zn_binding PF02805.16 CQR51632.1 - 3.4e-28 97.5 2.3 5.3e-28 96.8 2.3 1.3 1 0 0 1 1 1 1 Metal binding domain of Ada HTH_18 PF12833.7 CQR51632.1 - 2.4e-19 69.4 0.1 3.6e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51632.1 - 9e-11 41.6 0.0 7.5e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DNA_binding_1 PF01035.20 CQR51633.1 - 2.4e-30 104.5 0.0 3.6e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HhH-GPD PF00730.25 CQR51634.1 - 3.9e-14 53.0 0.0 5.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 CQR51634.1 - 5.4e-07 29.7 0.0 9.4e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 8-oxoguanine DNA glycosylase, N-terminal domain AlkA_N PF06029.11 CQR51634.1 - 1.7e-06 28.3 0.0 8.6e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 AlkA N-terminal domain Sigma70_r4_2 PF08281.12 CQR51635.1 - 3.6e-16 58.6 0.2 8.6e-16 57.4 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR51635.1 - 1.3e-11 44.1 0.2 2.7e-11 43.0 0.2 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR51635.1 - 3.2e-11 42.6 0.4 6.6e-11 41.6 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR51635.1 - 1.9e-08 34.4 0.9 0.0022 17.9 0.1 2.2 1 1 1 2 2 2 2 ECF sigma factor HTH_23 PF13384.6 CQR51635.1 - 1.6e-05 24.5 0.3 3.6e-05 23.4 0.3 1.7 1 0 0 1 1 1 1 Homeodomain-like domain UPF0122 PF04297.14 CQR51635.1 - 0.00039 20.6 0.1 0.0092 16.2 0.0 2.7 1 1 2 3 3 3 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.6 CQR51635.1 - 0.0017 18.1 0.2 0.0037 17.0 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Phage_antitermQ PF06530.12 CQR51635.1 - 0.0055 16.6 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 Phage antitermination protein Q GerE PF00196.19 CQR51635.1 - 0.0076 15.8 0.0 0.023 14.2 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family HTH_30 PF13556.6 CQR51635.1 - 0.0081 15.9 0.7 0.016 15.0 0.1 1.9 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 CQR51635.1 - 0.01 15.4 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 CQR51635.1 - 0.011 15.9 0.4 0.027 14.6 0.4 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 CQR51635.1 - 0.035 14.1 0.1 0.091 12.8 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_16 PF12645.7 CQR51635.1 - 0.038 14.0 0.1 0.087 12.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.11 CQR51635.1 - 0.054 13.5 0.0 0.43 10.6 0.0 2.1 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF134 PF02001.16 CQR51635.1 - 0.059 13.9 0.0 0.1 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_10 PF04967.12 CQR51635.1 - 0.063 13.1 0.2 0.22 11.3 0.1 2.0 2 0 0 2 2 2 0 HTH DNA binding domain Mga PF05043.13 CQR51635.1 - 0.14 12.8 0.6 0.78 10.4 0.0 2.3 2 1 0 2 2 2 0 Mga helix-turn-helix domain DUF5643 PF18705.1 CQR51636.1 - 3.7e-15 55.9 0.1 7.1e-15 55.0 0.1 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5643) DUF4179 PF13786.6 CQR51636.1 - 5e-12 46.1 0.0 9.6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4179) ParBc_2 PF08857.11 CQR51636.1 - 0.081 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative ParB-like nuclease DUF5643 PF18705.1 CQR51637.1 - 1.7e-06 28.0 0.0 3.5e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5643) Abhydrolase_1 PF00561.20 CQR51638.1 - 2.1e-06 27.6 0.0 3.6e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 CQR51638.1 - 0.00017 20.9 0.0 0.0019 17.5 0.0 2.4 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR51638.1 - 0.0032 18.1 0.0 0.0037 17.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Sigma_reg_N PF13800.6 CQR51638.1 - 0.015 15.6 0.4 0.049 13.9 0.4 1.8 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF1350 PF07082.11 CQR51638.1 - 0.019 14.2 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) DUF2417 PF10329.9 CQR51638.1 - 0.084 12.3 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Region of unknown function (DUF2417) DUF1788 PF08747.11 CQR51638.1 - 0.14 12.2 0.4 0.39 10.7 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF1788) Peripla_BP_3 PF13377.6 CQR51639.1 - 2.5e-34 119.0 0.0 4.5e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR51639.1 - 2.5e-21 76.3 0.0 3.1e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR51639.1 - 7.2e-19 67.3 0.2 1.5e-18 66.3 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR51639.1 - 4.2e-10 39.6 0.0 6.4e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR51639.1 - 0.0011 19.0 0.1 0.0023 18.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 CQR51639.1 - 0.0067 16.2 0.0 0.018 14.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 CQR51639.1 - 0.014 15.2 0.0 0.034 13.9 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 CQR51639.1 - 0.031 14.0 0.2 0.074 12.8 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 CQR51639.1 - 0.042 14.2 0.0 0.13 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 CQR51639.1 - 0.068 13.2 0.2 0.62 10.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix MerR PF00376.23 CQR51639.1 - 0.079 12.7 0.1 0.19 11.5 0.1 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_24 PF13412.6 CQR51639.1 - 0.1 12.2 0.3 0.31 10.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 CQR51639.1 - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 CQR51639.1 - 0.12 11.8 0.1 0.25 10.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.6 CQR51639.1 - 0.16 12.0 0.1 0.37 10.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain BPD_transp_1 PF00528.22 CQR51640.1 - 2.2e-11 43.8 16.8 2.2e-11 43.8 16.8 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR51641.1 - 1.5e-32 113.0 0.0 2.9e-32 112.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51641.1 - 5.1e-08 33.1 0.1 6.7e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 CQR51641.1 - 9.5e-07 28.9 0.0 9.2e-06 25.7 0.1 2.3 2 0 0 2 2 2 1 TOBE domain AAA PF00004.29 CQR51641.1 - 0.0001 22.7 0.0 0.00061 20.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 CQR51641.1 - 0.00013 22.2 0.4 0.00079 19.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain CysA_C_terminal PF17850.1 CQR51641.1 - 0.0015 19.1 0.0 0.003 18.1 0.0 1.6 1 0 0 1 1 1 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 CQR51641.1 - 0.0017 18.7 0.1 0.0038 17.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.17 CQR51641.1 - 0.0032 17.7 0.0 0.009 16.3 0.0 1.8 1 0 0 1 1 1 1 TOBE domain RsgA_GTPase PF03193.16 CQR51641.1 - 0.0036 17.2 0.2 0.011 15.6 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 CQR51641.1 - 0.0038 17.2 0.0 0.0057 16.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 CQR51641.1 - 0.0052 16.2 0.1 0.7 9.3 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain OB_MalK PF17912.1 CQR51641.1 - 0.019 15.8 0.1 0.063 14.1 0.1 2.0 1 0 0 1 1 1 0 MalK OB fold domain Mg_chelatase PF01078.21 CQR51641.1 - 0.027 13.9 0.0 0.067 12.6 0.0 1.7 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 CQR51641.1 - 0.034 14.4 0.6 0.46 10.7 0.6 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 CQR51641.1 - 0.051 14.1 0.1 0.34 11.5 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 CQR51641.1 - 0.053 13.2 0.5 0.35 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 CQR51641.1 - 0.058 13.2 0.4 0.13 12.0 0.4 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 CQR51641.1 - 0.07 12.7 0.5 0.65 9.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR51641.1 - 0.091 12.9 0.2 0.39 10.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.6 CQR51642.1 - 4.5e-31 108.7 7.6 4.5e-31 108.7 7.6 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR51642.1 - 2.4e-19 70.5 10.4 3.4e-19 69.9 10.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR51642.1 - 1.5e-15 57.3 0.6 2.3e-15 56.7 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR51642.1 - 2.9e-12 46.8 0.1 4.8e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein CBM65_1 PF18259.1 CQR51642.1 - 0.0084 16.2 1.0 0.56 10.4 0.1 2.5 3 0 0 3 3 3 1 Carbohydrate binding module 65 domain 1 TctC PF03401.14 CQR51642.1 - 0.062 12.3 0.2 0.27 10.3 0.1 2.0 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter family receptor BPD_transp_1 PF00528.22 CQR51643.1 - 6.2e-14 52.2 18.1 6.2e-14 52.2 18.1 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2508 PF10704.9 CQR51644.1 - 0.087 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) PHP PF02811.19 CQR51645.1 - 5.6e-07 30.0 0.0 5.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 PHP domain TTc_toxin_rep PF18807.1 CQR51645.1 - 0.067 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Tripartite Tc toxins repeat GDPD PF03009.17 CQR51646.1 - 4e-22 79.2 0.4 1.2e-21 77.6 0.4 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family baeRF_family10 PF18854.1 CQR51646.1 - 0.07 13.4 0.2 0.13 12.5 0.2 1.4 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 BRCA2 PF00634.18 CQR51646.1 - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 BRCA2 repeat 3-dmu-9_3-mt PF06983.13 CQR51647.1 - 2.4e-10 41.0 0.0 3.7e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.25 CQR51647.1 - 3.1e-10 40.3 0.0 5.2e-10 39.6 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PGM1_C PF18105.1 CQR51647.1 - 0.15 11.6 0.0 0.58 9.7 0.0 2.0 2 0 0 2 2 2 0 PGM1 C-terminal domain WYL PF13280.6 CQR51648.1 - 8.5e-23 81.3 0.0 1.9e-22 80.1 0.0 1.6 1 1 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR51648.1 - 2.8e-11 43.2 0.0 4.8e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR51648.1 - 4.5e-08 32.7 0.0 8.5e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR51648.1 - 0.00031 21.0 0.0 0.00057 20.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Mga PF08280.11 CQR51648.1 - 0.0039 17.2 0.0 0.0085 16.1 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HSBP1 PF06825.12 CQR51648.1 - 0.008 16.0 0.1 0.053 13.4 0.0 2.1 2 0 0 2 2 2 1 Heat shock factor binding protein 1 IF2_N PF04760.15 CQR51648.1 - 0.011 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_10 PF04967.12 CQR51648.1 - 0.034 13.9 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.6 CQR51648.1 - 0.073 13.2 0.1 0.28 11.4 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain SpoIIID PF12116.8 CQR51648.1 - 0.084 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_23 PF13384.6 CQR51648.1 - 0.098 12.5 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 CQR51648.1 - 0.12 12.2 0.0 0.34 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain dCache_1 PF02743.18 CQR51649.1 - 9.6e-18 64.9 4.4 9.6e-18 64.9 4.4 1.9 2 0 0 2 2 2 1 Cache domain His_kinase PF06580.13 CQR51649.1 - 1.3e-14 54.3 2.2 1.3e-14 54.3 2.2 2.4 2 1 1 3 3 3 1 Histidine kinase HATPase_c PF02518.26 CQR51649.1 - 1.1e-07 32.3 0.0 2.7e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR51649.1 - 0.00044 20.1 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2140 PF09911.9 CQR51649.1 - 0.04 13.5 1.3 0.094 12.2 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2140) Pox_EPC_I2-L1 PF12575.8 CQR51649.1 - 0.38 11.0 6.2 0.33 11.2 0.9 2.5 2 0 0 2 2 2 0 Poxvirus entry protein complex L1 and I2 DUF2393 PF09624.10 CQR51649.1 - 2.7 8.0 5.0 1.8 8.5 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) Response_reg PF00072.24 CQR51650.1 - 1.2e-21 77.0 0.1 4.1e-21 75.2 0.1 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR51650.1 - 5e-16 58.7 0.5 2e-15 56.8 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51650.1 - 6.2e-16 58.0 1.3 1e-08 35.1 0.2 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.6 CQR51650.1 - 0.00012 21.7 0.0 0.18 11.6 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain UPF0122 PF04297.14 CQR51650.1 - 0.0013 19.0 3.7 0.0028 17.9 1.1 2.6 1 1 1 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like Rrf2 PF02082.20 CQR51650.1 - 0.0037 17.6 0.1 0.01 16.2 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_3 PF01381.22 CQR51650.1 - 0.011 15.7 0.0 0.097 12.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix Acyl-CoA_dh_1 PF00441.24 CQR51650.1 - 0.034 14.3 0.5 8.8 6.5 0.0 2.7 2 1 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain HNF-1_N PF04814.13 CQR51650.1 - 0.042 14.5 1.7 0.053 14.1 0.5 1.8 2 0 0 2 2 2 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus MarR_2 PF12802.7 CQR51650.1 - 0.15 12.0 0.1 0.79 9.7 0.0 2.2 2 0 0 2 2 2 0 MarR family Metallophos PF00149.28 CQR51651.1 - 8e-16 59.1 0.2 3.5e-15 57.1 0.2 2.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Laminin_G_3 PF13385.6 CQR51651.1 - 6.4e-15 55.6 0.1 6.4e-15 55.6 0.1 2.5 3 0 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily Metallophos_2 PF12850.7 CQR51651.1 - 1.6e-07 31.7 0.0 5.5e-07 29.9 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Sialidase PF02973.16 CQR51651.1 - 1.4e-05 24.7 0.1 3.9e-05 23.2 0.1 1.8 1 0 0 1 1 1 1 Sialidase, N-terminal domain fn3 PF00041.21 CQR51651.1 - 2.3e-05 24.6 0.0 6.6e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Fibronectin type III domain Big_2 PF02368.18 CQR51651.1 - 4e-05 23.4 9.2 9e-05 22.3 0.8 3.5 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 2) SBP_bac_1 PF01547.25 CQR51652.1 - 3.1e-32 112.8 10.5 4.4e-32 112.3 10.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR51652.1 - 3.6e-31 109.0 6.6 4.8e-31 108.6 6.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR51652.1 - 0.16 11.7 0.0 0.96 9.1 0.0 2.3 2 1 1 3 3 3 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR51653.1 - 1.3e-11 44.6 24.4 1.3e-11 44.6 24.4 2.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51654.1 - 6e-16 58.7 16.3 6e-16 58.7 16.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component 7TM_GPCR_Srw PF10324.9 CQR51654.1 - 0.024 13.9 7.6 0.041 13.2 7.6 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srw GFO_IDH_MocA PF01408.22 CQR51655.1 - 1.5e-14 54.9 0.0 2.4e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 CQR51655.1 - 0.00054 20.6 0.0 0.00082 20.0 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.25 CQR51656.1 - 1.2e-09 38.4 0.1 1.6e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 CQR51656.1 - 1.5e-05 24.8 0.0 4.8e-05 23.2 0.0 1.8 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 CQR51656.1 - 0.00016 21.7 0.0 0.0007 19.7 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR51656.1 - 0.00047 20.5 0.0 0.00098 19.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR51656.1 - 0.0028 17.6 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PP2C_2 PF13672.6 CQR51657.1 - 1.6e-07 31.2 0.4 2.3e-07 30.6 0.4 1.3 1 1 0 1 1 1 1 Protein phosphatase 2C GntR PF00392.21 CQR51658.1 - 1.3e-11 44.0 0.0 2.7e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Aminotran_1_2 PF00155.21 CQR51658.1 - 1.2e-10 41.2 0.0 1.8e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 CQR51658.1 - 7.6e-05 21.7 0.0 0.011 14.5 0.0 2.2 2 0 0 2 2 2 2 Alanine-glyoxylate amino-transferase Acetyltransf_3 PF13302.7 CQR51659.1 - 2.4e-23 83.3 0.0 3e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR51659.1 - 8.9e-10 38.8 0.2 1.2e-09 38.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 CQR51659.1 - 1.9e-09 37.9 0.5 2.2e-09 37.6 0.5 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR51659.1 - 9.8e-07 29.1 0.1 1.6e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR51659.1 - 2.2e-06 27.4 0.0 5.7e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR51659.1 - 5.6e-06 26.3 0.3 8.3e-06 25.8 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR51659.1 - 0.031 14.3 0.3 0.12 12.3 0.3 2.0 1 1 0 1 1 1 0 FR47-like protein HSP20 PF00011.21 CQR51660.1 - 3e-22 78.7 0.6 3.9e-22 78.3 0.6 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 CQR51660.1 - 0.0015 18.0 0.1 0.0096 15.5 0.1 2.0 1 1 0 1 1 1 1 HSP20-like domain found in ArsA Sin3a_C PF16879.5 CQR51660.1 - 0.019 14.7 0.3 0.02 14.7 0.3 1.1 1 0 0 1 1 1 0 C-terminal domain of Sin3a protein DnaJ_C PF01556.18 CQR51662.1 - 7.5e-31 107.2 0.0 1.1e-25 90.4 0.0 1.4 1 1 1 2 2 2 2 DnaJ C terminal domain DnaJ PF00226.31 CQR51662.1 - 1.9e-24 85.5 2.5 1.9e-24 85.5 2.5 1.5 2 0 0 2 2 2 1 DnaJ domain AAA_2 PF07724.14 CQR51663.1 - 3.5e-60 203.0 0.0 1.3e-56 191.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 CQR51663.1 - 2.1e-34 117.5 2.2 5.4e-34 116.2 0.2 2.5 2 0 0 2 2 2 1 AAA lid domain AAA PF00004.29 CQR51663.1 - 1.2e-26 93.6 0.7 1.4e-14 54.6 0.0 3.5 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 CQR51663.1 - 7.8e-23 80.3 0.2 4e-22 78.1 0.2 2.4 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 CQR51663.1 - 2.5e-19 69.6 0.1 2.4e-13 50.2 0.0 3.0 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) Clp_N PF02861.20 CQR51663.1 - 3.9e-13 49.3 17.1 3.2e-09 36.8 3.3 3.9 5 0 0 5 5 2 2 Clp amino terminal domain, pathogenicity island component AAA_16 PF13191.6 CQR51663.1 - 1.2e-10 42.1 17.7 1.1e-05 25.9 0.1 6.0 5 2 1 6 6 5 2 AAA ATPase domain AAA_22 PF13401.6 CQR51663.1 - 4.9e-09 36.6 4.7 0.0053 17.0 0.1 5.1 4 2 0 4 4 2 2 AAA domain IstB_IS21 PF01695.17 CQR51663.1 - 6.2e-08 32.6 0.0 0.023 14.4 0.0 3.2 4 0 0 4 4 2 2 IstB-like ATP binding protein TniB PF05621.11 CQR51663.1 - 7.5e-08 32.0 1.6 2e-05 24.1 0.0 4.0 3 1 0 3 3 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 CQR51663.1 - 7.6e-08 32.2 0.0 3.8e-05 23.4 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 CQR51663.1 - 1.5e-06 27.8 0.1 0.32 10.3 0.0 4.2 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 CQR51663.1 - 2.3e-06 27.5 0.0 0.017 14.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.6 CQR51663.1 - 4.7e-06 26.7 0.0 0.15 12.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 CQR51663.1 - 6.9e-06 26.1 6.3 0.29 11.0 0.0 4.1 3 2 1 4 4 3 2 ATPase domain predominantly from Archaea AAA_7 PF12775.7 CQR51663.1 - 2e-05 24.2 0.0 0.15 11.5 0.0 2.7 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_18 PF13238.6 CQR51663.1 - 7e-05 23.4 0.8 0.37 11.3 0.0 3.6 3 0 0 3 3 3 2 AAA domain NACHT PF05729.12 CQR51663.1 - 7e-05 22.8 0.0 0.078 12.9 0.0 3.0 2 0 0 2 2 2 1 NACHT domain Zeta_toxin PF06414.12 CQR51663.1 - 7.8e-05 22.0 0.2 0.05 12.9 0.0 3.5 3 0 0 3 3 3 1 Zeta toxin AAA_23 PF13476.6 CQR51663.1 - 8e-05 23.2 9.7 0.14 12.7 0.0 3.7 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.12 CQR51663.1 - 9.1e-05 22.3 2.9 1.3 8.8 0.0 4.4 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 CQR51663.1 - 0.00028 21.2 0.1 1.4 9.4 0.0 2.9 3 0 0 3 3 2 2 RNA helicase ABC_tran PF00005.27 CQR51663.1 - 0.0006 20.3 0.2 0.2 12.1 0.0 3.3 3 0 0 3 3 3 1 ABC transporter Roc PF08477.13 CQR51663.1 - 0.00066 19.9 0.0 2.1 8.6 0.0 2.6 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase AAA_25 PF13481.6 CQR51663.1 - 0.00072 19.2 2.2 0.23 11.0 0.0 3.7 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 CQR51663.1 - 0.00092 19.5 0.2 5.1 7.3 0.0 4.0 4 0 0 4 4 3 0 AAA domain DUF815 PF05673.13 CQR51663.1 - 0.0016 17.6 0.1 0.14 11.3 0.1 3.0 3 1 0 3 3 3 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 CQR51663.1 - 0.0019 18.3 0.0 1.8 8.7 0.0 3.4 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 CQR51663.1 - 0.0034 17.3 0.0 4.7 7.1 0.0 2.9 2 0 0 2 2 2 0 RsgA GTPase TsaE PF02367.17 CQR51663.1 - 0.0036 17.3 0.0 4.9 7.2 0.0 3.0 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 CQR51663.1 - 0.0058 16.5 0.1 2.3 8.1 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 CQR51663.1 - 0.0062 16.3 0.0 0.64 9.8 0.0 2.6 2 0 0 2 2 2 1 DNA polymerase III, delta subunit ResIII PF04851.15 CQR51663.1 - 0.01 15.8 0.0 6.4 6.7 0.0 3.0 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 CQR51663.1 - 0.025 14.9 1.3 0.4 11.0 0.0 3.2 2 2 0 3 3 3 0 AAA domain AAA_29 PF13555.6 CQR51663.1 - 0.034 13.9 0.0 12 5.7 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain PhoH PF02562.16 CQR51663.1 - 0.039 13.4 0.0 0.95 8.9 0.0 2.7 2 0 0 2 2 2 0 PhoH-like protein ADIP PF11559.8 CQR51663.1 - 0.069 13.2 5.8 0.25 11.4 5.8 1.9 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AAA_21 PF13304.6 CQR51663.1 - 0.072 12.9 0.0 12 5.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_1 PF03266.15 CQR51663.1 - 0.074 13.0 0.2 3.6 7.5 0.0 2.8 3 0 0 3 3 2 0 NTPase SRP54 PF00448.22 CQR51663.1 - 0.098 12.3 0.0 18 4.9 0.0 2.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RHH_3 PF12651.7 CQR51663.1 - 0.11 12.5 0.1 4.7 7.3 0.0 3.5 3 0 0 3 3 2 0 Ribbon-helix-helix domain Spc7 PF08317.11 CQR51663.1 - 0.18 10.6 11.5 0.46 9.3 11.5 1.6 1 0 0 1 1 1 0 Spc7 kinetochore protein Erythro_esteras PF05139.14 CQR51663.1 - 0.33 10.7 5.3 0.94 9.2 5.3 1.7 1 0 0 1 1 1 0 Erythromycin esterase XPC-binding PF09280.11 CQR51663.1 - 0.42 10.4 5.6 2.9 7.7 2.2 3.5 4 0 0 4 4 3 0 XPC-binding domain Prefoldin PF02996.17 CQR51663.1 - 1.2 9.1 7.2 11 6.0 0.1 4.4 2 1 2 4 4 4 0 Prefoldin subunit Tup_N PF08581.10 CQR51663.1 - 1.8 8.9 6.8 0.96 9.8 3.5 2.4 2 0 0 2 2 1 0 Tup N-terminal DUF87 PF01935.17 CQR51663.1 - 1.9 8.5 4.2 11 6.0 0.0 3.1 3 0 0 3 3 3 0 Helicase HerA, central domain CENP-F_leu_zip PF10473.9 CQR51663.1 - 2.6 8.1 16.4 7.8 6.5 12.1 3.2 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NYD-SP28 PF14772.6 CQR51663.1 - 3.1 7.9 15.1 15 5.7 14.9 2.3 1 1 0 1 1 1 0 Sperm tail MFS_1 PF07690.16 CQR51664.1 - 2.8e-32 112.0 75.4 2.7e-26 92.3 45.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Glycos_transf_2 PF00535.26 CQR51665.1 - 8.1e-16 58.3 1.6 2.2e-08 34.1 0.4 3.1 2 1 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 CQR51665.1 - 1.4e-13 51.1 1.5 1.1e-09 38.7 0.2 3.0 2 1 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR51665.1 - 9.2e-06 25.7 0.0 0.055 13.4 0.0 2.6 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Anp1 PF03452.14 CQR51665.1 - 0.0043 16.5 0.8 2.1 7.7 0.0 2.6 3 0 0 3 3 3 2 Anp1 SBP_bac_5 PF00496.22 CQR51666.1 - 9.3e-86 288.1 6.8 1.3e-85 287.6 6.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 CQR51667.1 - 1.5e-41 142.2 12.2 1.5e-41 142.2 12.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51668.1 - 1.6e-33 116.0 17.4 2.1e-33 115.6 14.1 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR51668.1 - 0.0074 16.2 0.1 0.0074 16.2 0.1 3.2 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF4059 PF13268.6 CQR51668.1 - 0.066 13.6 5.9 0.097 13.1 1.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4059) Orthoreo_P10 PF07204.11 CQR51668.1 - 0.068 13.1 1.3 6.5 6.8 0.1 2.6 2 0 0 2 2 2 0 Orthoreovirus membrane fusion protein p10 DUF3482 PF11981.8 CQR51668.1 - 0.29 10.5 0.9 0.39 10.1 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) ABC_tran PF00005.27 CQR51669.1 - 6.6e-30 104.4 0.0 1e-29 103.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR51669.1 - 2.2e-18 66.5 0.1 4.2e-18 65.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR51669.1 - 6.1e-07 29.5 0.9 3e-05 24.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR51669.1 - 5.2e-06 26.0 0.0 9.7e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR51669.1 - 0.00013 21.6 0.1 0.00028 20.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR51669.1 - 0.0068 16.8 0.3 0.015 15.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 CQR51669.1 - 0.016 15.3 0.3 0.052 13.6 0.1 1.8 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_22 PF13401.6 CQR51669.1 - 0.018 15.3 1.0 0.26 11.5 1.0 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 CQR51669.1 - 0.056 12.8 0.1 0.26 10.6 0.1 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 CQR51669.1 - 0.07 12.8 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 CQR51669.1 - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 CQR51669.1 - 0.13 12.0 0.3 1 9.0 0.0 2.2 2 1 0 2 2 2 0 IstB-like ATP binding protein Herpes_ori_bp PF02399.15 CQR51669.1 - 0.29 9.1 0.0 0.37 8.8 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein ABC_tran PF00005.27 CQR51670.1 - 2.9e-30 105.6 0.0 4.1e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR51670.1 - 8e-09 35.9 0.0 1.6e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR51670.1 - 0.00011 21.7 0.1 0.0083 15.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR51670.1 - 0.00057 19.8 0.1 0.055 13.3 0.0 2.3 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR51670.1 - 0.0066 16.7 0.1 0.027 14.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR51670.1 - 0.0067 16.1 0.4 0.012 15.3 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR51670.1 - 0.012 16.0 0.4 0.016 15.6 0.4 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 CQR51670.1 - 0.13 11.8 0.0 7.3 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Lactamase_B PF00753.27 CQR51672.1 - 2.3e-11 44.1 1.4 3.8e-11 43.4 1.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily adh_short PF00106.25 CQR51673.1 - 4e-44 150.4 0.0 5.4e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR51673.1 - 1.3e-34 119.8 0.0 1.8e-34 119.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR51673.1 - 4.3e-11 43.0 0.0 9.4e-11 41.9 0.0 1.4 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.6 CQR51673.1 - 0.00041 20.3 0.0 0.00055 19.9 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 CQR51673.1 - 0.0015 18.0 0.1 0.0054 16.2 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family AI-2E_transport PF01594.16 CQR51674.1 - 2.5e-37 128.8 43.4 3.6e-37 128.2 43.4 1.2 1 0 0 1 1 1 1 AI-2E family transporter DUF3272 PF11676.8 CQR51674.1 - 0.8 10.0 10.6 0.99 9.7 0.8 3.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3272) SHOCT PF09851.9 CQR51675.1 - 0.00018 21.1 0.4 0.00018 21.1 0.4 1.7 2 0 0 2 2 2 1 Short C-terminal domain Response_reg PF00072.24 CQR51676.1 - 7e-29 100.3 0.3 1.3e-28 99.4 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR51676.1 - 9.1e-26 89.7 0.1 2.4e-25 88.4 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR51677.1 - 1.5e-26 93.1 0.0 3e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR51677.1 - 2.1e-09 37.3 0.0 7e-09 35.6 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 CQR51677.1 - 4.8e-06 26.4 0.0 1.2e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HAMP PF00672.25 CQR51677.1 - 0.0028 18.0 0.0 0.0077 16.6 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 CQR51677.1 - 0.016 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Caudo_TAP PF02413.17 CQR51677.1 - 0.042 14.0 0.3 0.089 12.9 0.3 1.5 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein, lambda gpK HATPase_c_3 PF13589.6 CQR51677.1 - 0.09 12.6 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PD40 PF07676.12 CQR51678.1 - 5e-07 29.5 0.3 0.0048 16.8 0.1 3.6 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 CQR51678.1 - 0.00056 18.8 0.1 0.81 8.4 0.0 3.3 3 1 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region PQQ_2 PF13360.6 CQR51678.1 - 0.036 13.6 2.0 0.047 13.3 0.7 1.8 2 1 0 2 2 2 0 PQQ-like domain LNS2 PF08235.13 CQR51678.1 - 0.039 13.4 0.1 0.064 12.7 0.1 1.3 1 0 0 1 1 1 0 LNS2 (Lipin/Ned1/Smp2) PQQ_3 PF13570.6 CQR51678.1 - 0.054 14.0 0.2 0.18 12.3 0.2 1.9 1 0 0 1 1 1 0 PQQ-like domain GARS_C PF02843.16 CQR51678.1 - 0.095 13.0 0.1 0.26 11.6 0.1 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain DUF4411 PF14367.6 CQR51679.1 - 5.1e-10 39.5 0.1 5.8e-10 39.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4411) DUF5615 PF18480.1 CQR51679.1 - 0.0041 16.8 0.2 0.0097 15.6 0.2 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) Yuri_gagarin PF15934.5 CQR51679.1 - 0.0068 16.3 0.1 0.009 15.9 0.1 1.1 1 0 0 1 1 1 1 Yuri gagarin MarR PF01047.22 CQR51681.1 - 5.3e-08 32.7 0.1 1.1e-07 31.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR51681.1 - 9.5e-07 29.2 1.0 1.9e-06 28.3 0.2 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 CQR51681.1 - 4.2e-06 26.5 0.2 1e-05 25.3 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 CQR51681.1 - 0.00011 22.3 0.0 0.00027 21.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain MCM6_C PF18263.1 CQR51681.1 - 0.097 12.9 0.2 1.7 8.9 0.0 2.2 2 1 0 2 2 2 0 MCM6 C-terminal winged-helix domain DASH_Dad4 PF08650.10 CQR51681.1 - 0.1 12.6 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 DASH complex subunit Dad4 DUF86 PF01934.17 CQR51681.1 - 0.11 12.4 0.1 0.32 10.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF86 Arylsulfotrans PF05935.11 CQR51682.1 - 9.8e-24 84.0 1.1 2.7e-21 75.9 0.1 3.2 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 CQR51682.1 - 6.4e-19 68.4 0.0 1.3e-18 67.4 0.0 1.4 2 0 0 2 2 2 1 Arylsulfotransferase (ASST) NMT1 PF09084.11 CQR51683.1 - 6.3e-22 78.6 0.4 8.5e-22 78.2 0.4 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 CQR51683.1 - 3.5e-08 33.4 0.3 4.3e-08 33.1 0.3 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 CQR51683.1 - 1.4e-07 31.1 0.0 0.00016 21.2 0.0 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 CQR51683.1 - 0.00038 20.2 0.4 0.0032 17.2 0.4 2.3 1 1 0 1 1 1 1 NMT1-like family Lipoprotein_9 PF03180.14 CQR51683.1 - 0.0016 17.6 0.3 1.1 8.3 0.1 3.2 3 0 0 3 3 3 1 NLPA lipoprotein LPAM_1 PF08139.12 CQR51683.1 - 0.011 16.2 0.7 0.027 15.0 0.7 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site MHB PF16525.5 CQR51683.1 - 0.2 11.9 0.1 30 5.0 0.0 2.4 2 0 0 2 2 2 0 Haemophore, haem-binding ABC_tran PF00005.27 CQR51684.1 - 4.7e-29 101.6 0.0 6.9e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51684.1 - 9.4e-06 25.6 0.2 0.089 12.6 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR51684.1 - 2.2e-05 24.4 0.1 6e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA PF00004.29 CQR51684.1 - 0.00016 22.1 0.1 0.0013 19.1 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR51684.1 - 0.00035 21.0 0.0 0.00054 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 CQR51684.1 - 0.00039 20.2 0.0 0.064 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 CQR51684.1 - 0.0011 18.9 0.0 0.047 13.6 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain SMC_N PF02463.19 CQR51684.1 - 0.0016 17.9 0.3 0.52 9.7 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 CQR51684.1 - 0.0019 17.1 0.1 0.085 11.6 0.0 2.5 2 1 1 3 3 3 1 Predicted ATPase of the ABC class AAA_25 PF13481.6 CQR51684.1 - 0.0019 17.8 0.1 0.0097 15.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR51684.1 - 0.0033 17.1 0.0 0.0075 16.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR51684.1 - 0.0036 17.6 0.0 0.0091 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR51684.1 - 0.0063 17.0 0.0 0.0085 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 CQR51684.1 - 0.011 15.8 0.1 0.052 13.6 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 CQR51684.1 - 0.016 15.5 0.0 0.14 12.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 CQR51684.1 - 0.019 14.0 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 CQR51684.1 - 0.023 15.1 0.0 0.057 13.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.6 CQR51684.1 - 0.03 14.1 0.0 0.088 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 CQR51684.1 - 0.05 13.5 0.1 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 CQR51684.1 - 0.068 13.4 0.2 0.23 11.7 0.2 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 CQR51684.1 - 0.086 12.8 0.3 0.21 11.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 CQR51684.1 - 0.091 12.1 0.0 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 CQR51684.1 - 0.091 12.9 0.1 0.34 11.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR51684.1 - 0.092 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 CQR51684.1 - 0.12 12.3 0.1 1.2 9.1 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 CQR51684.1 - 0.2 11.4 0.1 0.73 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 CQR51685.1 - 3.1e-24 85.7 15.6 4.7e-24 85.1 15.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MarR_2 PF12802.7 CQR51686.1 - 1.6e-14 53.5 0.0 2.4e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR51686.1 - 4.6e-12 45.7 0.0 8.7e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR51686.1 - 5.4e-10 39.6 0.0 8.7e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR51686.1 - 3.1e-05 23.4 0.0 7.3e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 CQR51686.1 - 0.00017 21.6 0.0 0.00032 20.8 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_34 PF13601.6 CQR51686.1 - 0.00076 19.6 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1803 PF08820.10 CQR51686.1 - 0.0022 18.0 0.2 0.038 14.0 0.0 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF1803) HTH_IclR PF09339.10 CQR51686.1 - 0.0022 17.7 0.0 0.0061 16.3 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 CQR51686.1 - 0.0033 17.8 0.0 0.0042 17.4 0.0 1.4 1 1 0 1 1 1 1 Penicillinase repressor YPEB PF14620.6 CQR51686.1 - 0.008 15.6 0.0 0.017 14.5 0.0 1.5 2 0 0 2 2 2 1 YpeB sporulation TrmB PF01978.19 CQR51686.1 - 0.025 14.4 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TBPIP PF07106.13 CQR51686.1 - 0.073 13.0 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Replic_Relax PF13814.6 CQR51686.1 - 0.1 12.6 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation IspA PF04279.15 CQR51686.1 - 0.11 12.7 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Intracellular septation protein A FeoC PF09012.10 CQR51686.1 - 0.18 11.9 0.0 1.8 8.7 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator Hydrolase_4 PF12146.8 CQR51687.1 - 5.4e-10 39.0 0.0 0.00017 20.9 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 CQR51687.1 - 1.8e-07 31.0 3.0 2.5e-06 27.2 0.1 3.0 1 1 2 3 3 3 1 Dienelactone hydrolase family DUF1100 PF06500.11 CQR51687.1 - 3.6e-07 29.3 0.0 5e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_6 PF12697.7 CQR51687.1 - 8.3e-07 29.8 2.2 1.8e-06 28.7 0.7 1.9 2 1 1 3 3 3 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 CQR51687.1 - 4e-05 23.4 0.0 5.5e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 CQR51687.1 - 0.00032 20.2 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 CQR51687.1 - 0.0006 19.5 0.1 0.0097 15.6 0.1 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 CQR51687.1 - 0.0079 16.1 0.0 0.015 15.2 0.0 1.5 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 CQR51687.1 - 0.044 13.6 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 CQR51687.1 - 0.068 13.0 0.0 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase AXE1 PF05448.12 CQR51687.1 - 0.071 11.8 0.1 0.76 8.4 0.0 2.4 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) LIP PF03583.14 CQR51687.1 - 0.18 11.1 0.0 1.5 8.1 0.0 2.0 2 0 0 2 2 2 0 Secretory lipase SBP_bac_6 PF13343.6 CQR51688.1 - 1.4e-33 116.3 2.8 2.1e-33 115.8 2.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR51688.1 - 4.1e-08 33.3 0.8 5.6e-08 32.8 0.1 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR51689.1 - 9.5e-10 38.5 20.1 9.5e-10 38.5 20.1 1.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51690.1 - 7.4e-11 42.1 17.2 7.4e-11 42.1 17.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR51691.1 - 1.6e-35 122.6 0.0 2.7e-35 121.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51691.1 - 3.3e-10 40.3 0.0 0.00047 20.1 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 CQR51691.1 - 5.5e-09 36.1 0.4 2e-08 34.3 0.4 2.0 1 0 0 1 1 1 1 TOBE domain AAA_16 PF13191.6 CQR51691.1 - 1.7e-05 25.3 1.0 3.8e-05 24.1 0.2 1.9 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 CQR51691.1 - 9.6e-05 21.9 0.3 0.011 15.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR51691.1 - 0.0021 18.0 0.1 0.0044 16.9 0.1 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 CQR51691.1 - 0.0046 16.6 0.1 0.11 12.0 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 CQR51691.1 - 0.0066 17.0 0.3 0.013 16.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 CQR51691.1 - 0.0066 16.6 0.0 0.02 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR51691.1 - 0.0078 16.5 1.0 0.06 13.6 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 CQR51691.1 - 0.013 15.9 0.1 0.07 13.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 CQR51691.1 - 0.014 15.1 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 CQR51691.1 - 0.042 13.9 0.2 0.14 12.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 CQR51691.1 - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 CQR51691.1 - 0.06 13.3 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 CQR51691.1 - 0.1 12.0 0.1 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 CQR51691.1 - 0.14 12.7 0.1 1.3 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Phosphodiest PF01663.22 CQR51692.1 - 3.3e-21 76.3 0.3 8.8e-20 71.6 0.3 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 CQR51692.1 - 7.7e-10 39.1 0.1 6.4e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 CQR51692.1 - 2.2e-08 33.8 0.0 4.9e-08 32.6 0.0 1.7 1 1 0 1 1 1 1 Metalloenzyme superfamily UvrD-helicase PF00580.21 CQR51694.1 - 6.9e-56 190.1 0.1 9.5e-33 114.0 0.2 2.2 1 1 1 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 CQR51694.1 - 1.3e-45 156.3 0.0 1.8e-45 155.8 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 CQR51694.1 - 7.8e-32 110.6 0.0 2.6e-31 108.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 CQR51694.1 - 4.5e-13 48.8 0.7 3.8e-05 23.4 0.0 3.0 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain YdjO PF14169.6 CQR51694.1 - 8.6e-09 35.0 0.6 2e-08 33.8 0.6 1.6 1 0 0 1 1 1 1 Cold-inducible protein YdjO AAA_30 PF13604.6 CQR51694.1 - 0.00025 20.8 0.1 0.032 14.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 CQR51694.1 - 0.0083 15.9 0.1 12 5.5 0.0 4.0 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 CQR51694.1 - 0.0092 15.6 0.0 0.39 10.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain Imm30 PF15565.6 CQR51697.1 - 6.4e-32 109.5 0.7 8.4e-32 109.1 0.7 1.2 1 0 0 1 1 1 1 Immunity protein 30 Msg2_C PF12373.8 CQR51697.1 - 0.28 10.7 1.3 1.2 8.7 0.6 2.2 2 0 0 2 2 2 0 Major surface glycoprotein 2 C terminal HTH_31 PF13560.6 CQR51699.1 - 5.1e-05 23.5 0.0 0.00015 22.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR51699.1 - 0.0001 22.3 0.1 0.00033 20.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_26 PF13443.6 CQR51699.1 - 0.0039 17.6 0.0 0.0076 16.7 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MarR PF01047.22 CQR51699.1 - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 MarR family TPR_16 PF13432.6 CQR51699.1 - 2.3 8.9 10.1 5.7 7.7 1.9 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat SpoOE-like PF09388.10 CQR51701.1 - 1.1e-10 41.2 0.0 1.4e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Spo0E like sporulation regulatory protein UFD1 PF03152.14 CQR51701.1 - 0.051 13.0 0.1 0.051 13.0 0.1 1.1 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 Hydrolase_3 PF08282.12 CQR51705.1 - 1.5e-61 208.4 0.0 1.9e-61 208.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR51705.1 - 1.4e-11 44.5 0.0 9e-07 28.7 0.0 2.2 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 CQR51705.1 - 3.3e-07 30.8 0.6 5.5e-05 23.6 0.6 2.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR51705.1 - 0.0019 18.7 0.7 0.13 12.6 0.0 3.0 2 2 1 3 3 3 1 haloacid dehalogenase-like hydrolase DUF445 PF04286.12 CQR51707.1 - 5.3e-63 214.0 1.1 6e-63 213.9 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Vir_act_alpha_C PF10400.9 CQR51707.1 - 0.1 13.3 5.1 0.12 13.1 3.4 2.0 2 0 0 2 2 2 0 Virulence activator alpha C-term Glyco_hydro_79n PF03662.14 CQR51707.1 - 0.18 10.7 0.0 0.28 10.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain P-II PF00543.22 CQR51709.1 - 3.2e-26 91.9 0.2 3.7e-26 91.7 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II XRN1_D1 PF18332.1 CQR51709.1 - 0.034 13.9 0.0 0.043 13.6 0.0 1.1 1 0 0 1 1 1 0 Exoribonuclease Xrn1 D1 domain Glycos_transf_1 PF00534.20 CQR51710.1 - 6.9e-39 133.1 0.0 1.1e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR51710.1 - 7.4e-33 113.8 0.2 1.7e-32 112.6 0.1 1.7 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR51710.1 - 3.7e-13 49.8 7.0 7.2e-13 48.9 0.5 2.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 CQR51710.1 - 1.7e-11 44.3 0.0 3.4e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 CQR51710.1 - 1.5e-10 41.8 2.7 1.5e-10 41.8 2.7 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain YlzJ PF14035.6 CQR51710.1 - 0.015 15.5 0.0 0.057 13.6 0.0 2.0 2 0 0 2 2 2 0 YlzJ-like protein ATG16 PF08614.11 CQR51712.1 - 0.0023 18.2 10.0 0.14 12.4 0.2 2.6 2 1 0 2 2 2 2 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 CQR51712.1 - 0.058 12.0 8.4 0.075 11.7 8.4 1.1 1 0 0 1 1 1 0 AAA domain TPR_MLP1_2 PF07926.12 CQR51712.1 - 0.064 13.3 11.5 0.93 9.6 3.1 2.6 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Filament PF00038.21 CQR51712.1 - 0.37 10.3 13.2 0.058 13.0 2.9 2.5 1 1 1 2 2 2 0 Intermediate filament protein CENP-K PF11802.8 CQR51712.1 - 0.51 9.9 5.7 0.69 9.4 5.7 1.2 1 0 0 1 1 1 0 Centromere-associated protein K Fib_alpha PF08702.10 CQR51712.1 - 0.85 9.8 11.6 0.48 10.6 1.6 2.6 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family HTH_35 PF13693.6 CQR51712.1 - 0.99 9.5 5.0 0.95 9.6 0.2 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF16 PF01519.16 CQR51712.1 - 4.8 7.7 8.8 17 5.9 0.9 3.3 1 1 3 4 4 4 0 Protein of unknown function DUF16 Exonuc_VII_L PF02601.15 CQR51712.1 - 5.8 6.4 15.8 2 7.9 4.2 2.0 1 1 1 2 2 2 0 Exonuclease VII, large subunit PAS PF00989.25 CQR51714.1 - 1.4e-42 144.2 0.0 4e-16 59.0 0.0 5.4 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.12 CQR51714.1 - 2.4e-40 136.7 0.0 2.5e-12 46.9 0.0 6.1 5 1 1 6 6 6 5 PAS fold PAS_9 PF13426.7 CQR51714.1 - 4.4e-40 136.1 0.0 3.5e-13 49.7 0.0 5.2 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.10 CQR51714.1 - 1.5e-38 131.4 0.0 9.9e-12 45.1 0.0 5.7 5 0 0 5 5 5 5 PAS fold HATPase_c PF02518.26 CQR51714.1 - 4.7e-32 110.8 0.0 9.4e-32 109.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR51714.1 - 1.4e-26 92.9 0.0 3.1e-26 91.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 CQR51714.1 - 1.7e-18 66.4 0.1 6.2e-18 64.6 0.1 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.6 CQR51714.1 - 3.8e-15 56.0 0.0 0.00082 19.5 0.0 5.1 5 0 0 5 5 5 4 PAS domain PAS_8 PF13188.7 CQR51714.1 - 5.6e-15 55.0 0.0 1.9e-05 24.6 0.0 3.9 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 CQR51714.1 - 0.00025 21.2 3.0 0.0071 16.5 0.0 3.7 3 1 1 4 4 4 1 PAS fold PAS_12 PF18095.1 CQR51714.1 - 0.017 14.8 0.0 58 3.3 0.0 3.7 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 CQR51714.1 - 0.025 14.4 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peptidase_C39_2 PF13529.6 CQR51715.1 - 2.6e-07 31.3 0.0 6.8e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Peptidase_C39 like family Alpha-amylase PF00128.24 CQR51717.1 - 2.4e-16 60.2 2.8 1.6e-10 41.1 0.2 3.1 3 0 0 3 3 3 3 Alpha amylase, catalytic domain CBM_48 PF02922.18 CQR51717.1 - 9.5e-14 51.5 0.0 2.2e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DUF3372 PF11852.8 CQR51717.1 - 0.00037 20.0 0.0 0.00064 19.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3372) GHL5 PF14872.6 CQR51717.1 - 0.0077 14.3 0.0 0.011 13.8 0.0 1.1 1 0 0 1 1 1 1 Hypothetical glycoside hydrolase 5 DUF3459 PF11941.8 CQR51717.1 - 0.041 14.2 0.1 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3459) RVT_1 PF00078.27 CQR51719.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR51719.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR51719.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase PadR PF03551.14 CQR51721.1 - 4.9e-18 64.9 2.1 6.1e-18 64.6 2.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR51721.1 - 3.4e-07 30.3 0.7 4.3e-06 26.8 0.2 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain YjcQ PF09639.10 CQR51721.1 - 0.015 15.5 0.2 0.019 15.2 0.2 1.2 1 0 0 1 1 1 0 YjcQ protein HTH_27 PF13463.6 CQR51721.1 - 0.016 15.7 0.0 0.027 14.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain RTP PF02334.16 CQR51721.1 - 0.022 15.4 0.9 0.024 15.2 0.9 1.2 1 0 0 1 1 1 0 Replication terminator protein Replic_Relax PF13814.6 CQR51721.1 - 0.029 14.4 0.0 0.035 14.2 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation RabGAP-TBC PF00566.18 CQR51721.1 - 0.041 13.5 0.1 0.045 13.4 0.1 1.1 1 0 0 1 1 1 0 Rab-GTPase-TBC domain ANT PF03374.14 CQR51721.1 - 0.093 13.1 0.3 0.2 12.0 0.3 1.6 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain Imm3 PF14425.6 CQR51722.1 - 0.0067 16.5 0.2 0.01 15.8 0.2 1.3 1 0 0 1 1 1 1 Immunity protein Imm3 DUF2207 PF09972.9 CQR51722.1 - 0.0068 15.2 5.6 0.049 12.4 0.2 2.0 1 1 1 2 2 2 2 Predicted membrane protein (DUF2207) DUF3784 PF12650.7 CQR51722.1 - 0.011 15.9 4.6 0.011 15.9 4.6 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) MTABC_N PF16185.5 CQR51722.1 - 0.012 15.2 0.5 0.012 15.2 0.5 2.0 1 1 1 2 2 2 0 Mitochondrial ABC-transporter N-terminal five TM region DUF4064 PF13273.6 CQR51722.1 - 0.017 15.4 1.9 0.017 15.4 1.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF2663 PF10864.8 CQR51722.1 - 0.049 14.0 0.8 0.48 10.8 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2663) DUF2070 PF09843.9 CQR51722.1 - 0.44 8.8 6.7 0.59 8.4 6.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4013 PF13197.6 CQR51722.1 - 0.58 10.0 15.7 0.04 13.8 6.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) GAPT PF11770.8 CQR51722.1 - 0.87 9.4 0.0 0.87 9.4 0.0 2.1 2 0 0 2 2 2 0 GRB2-binding adapter (GAPT) Pyr_redox_2 PF07992.14 CQR51726.1 - 8.9e-25 87.5 2.1 4.3e-16 59.0 0.4 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 CQR51726.1 - 3.1e-23 81.7 0.0 4.9e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NAD_binding_8 PF13450.6 CQR51726.1 - 1e-11 44.9 1.0 3.5e-11 43.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 CQR51726.1 - 2.1e-11 43.6 0.4 0.00013 21.4 0.0 3.3 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR51726.1 - 3.4e-10 40.3 0.5 2.2e-06 28.2 0.2 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR51726.1 - 2.1e-08 34.0 2.1 2.6e-07 30.4 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR51726.1 - 2.4e-08 33.1 1.0 1.2e-06 27.5 0.2 2.5 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 CQR51726.1 - 4.9e-08 32.5 2.0 5.9e-06 25.6 0.1 3.2 3 0 0 3 3 3 1 FAD binding domain Amino_oxidase PF01593.24 CQR51726.1 - 8.1e-08 32.0 0.9 3.2e-07 30.0 0.1 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.24 CQR51726.1 - 2.3e-07 30.8 6.9 4.3e-05 23.3 0.4 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase AdoHcyase_NAD PF00670.21 CQR51726.1 - 2.3e-06 27.8 1.2 0.024 14.7 0.1 2.4 2 0 0 2 2 2 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GIDA PF01134.22 CQR51726.1 - 4.1e-06 26.1 0.2 0.0036 16.4 0.1 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_7 PF13241.6 CQR51726.1 - 3.1e-05 24.3 0.1 0.091 13.2 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 CQR51726.1 - 8.5e-05 21.9 1.6 0.00029 20.2 0.0 2.4 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 CQR51726.1 - 0.00017 20.9 1.4 0.0028 16.9 0.1 2.2 2 0 0 2 2 2 1 Thi4 family FMO-like PF00743.19 CQR51726.1 - 0.00074 18.1 0.1 0.03 12.8 0.0 2.1 1 1 0 2 2 2 1 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 CQR51726.1 - 0.0025 16.9 0.9 0.025 13.6 0.3 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.16 CQR51726.1 - 0.0035 17.0 0.1 0.0064 16.1 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 CQR51726.1 - 0.0052 16.1 0.5 1 8.6 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 CQR51726.1 - 0.011 15.6 0.4 0.073 13.0 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 CQR51726.1 - 0.018 14.4 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 CQR51726.1 - 0.021 14.8 0.9 0.17 11.9 0.1 2.8 3 1 1 4 4 4 0 FAD-NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 CQR51726.1 - 0.03 14.3 0.3 0.11 12.5 0.1 1.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PALP PF00291.25 CQR51726.1 - 0.054 12.9 0.0 0.72 9.2 0.0 2.4 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 CQR51726.1 - 0.057 14.0 0.1 1.2 9.7 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent K_oxygenase PF13434.6 CQR51726.1 - 0.077 12.1 0.1 6.3 5.8 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) IlvN PF07991.12 CQR51726.1 - 0.084 12.4 1.1 0.18 11.4 0.1 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 CQR51726.1 - 0.086 12.9 0.1 15 5.6 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase YjeF_N PF03853.15 CQR51726.1 - 0.13 12.1 3.0 0.53 10.2 0.1 2.5 1 1 2 3 3 3 0 YjeF-related protein N-terminus UDPG_MGDP_dh_N PF03721.14 CQR51726.1 - 0.14 11.7 0.1 0.4 10.2 0.1 1.8 2 0 0 2 2 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DJ-1_PfpI PF01965.24 CQR51726.1 - 0.58 9.9 2.1 11 5.8 0.1 2.8 1 1 2 3 3 3 0 DJ-1/PfpI family Trp_halogenase PF04820.14 CQR51726.1 - 0.66 8.8 1.8 0.54 9.1 0.2 1.6 2 0 0 2 2 2 0 Tryptophan halogenase Metallophos_2 PF12850.7 CQR51730.1 - 1.1e-23 84.3 0.0 1.3e-23 84.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 CQR51730.1 - 8.1e-10 39.5 0.1 1.1e-09 39.1 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 CQR51730.1 - 0.021 14.1 0.0 0.088 12.1 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily PAD_porph PF04371.15 CQR51732.1 - 6.9e-120 400.1 0.0 7.8e-120 400.0 0.0 1.0 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase Pertussis_S2S3 PF02918.15 CQR51732.1 - 0.17 11.8 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Pertussis toxin, subunit 2 and 3, C-terminal domain CN_hydrolase PF00795.22 CQR51734.1 - 1.5e-54 185.1 0.0 1.8e-54 184.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase SBP_bac_3 PF00497.20 CQR51738.1 - 6.3e-57 192.6 3.2 7.2e-57 192.4 3.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 CQR51738.1 - 1.5e-06 28.3 0.5 7.3e-05 22.9 0.2 2.8 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 CQR51738.1 - 0.0021 18.1 0.9 0.0034 17.3 0.2 1.6 2 0 0 2 2 2 1 NMT1/THI5 like APA3_viroporin PF11289.8 CQR51738.1 - 0.021 14.4 0.1 0.03 13.9 0.1 1.2 1 0 0 1 1 1 0 Coronavirus accessory protein 3a BPD_transp_1 PF00528.22 CQR51740.1 - 2.6e-18 66.4 9.7 2.6e-18 66.4 9.7 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR51742.1 - 3.3e-35 121.6 0.0 4.3e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51742.1 - 5.7e-12 46.0 0.0 9.7e-05 22.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR51742.1 - 1.4e-08 34.5 0.1 3e-07 30.1 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR51742.1 - 1.3e-05 25.1 0.0 0.00017 21.5 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR51742.1 - 0.00013 21.6 0.0 0.00034 20.3 0.0 1.7 1 1 1 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR51742.1 - 0.00051 20.0 0.0 0.002 18.1 0.0 1.9 1 1 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 CQR51742.1 - 0.00063 20.3 0.0 0.0017 18.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 CQR51742.1 - 0.00073 20.0 0.1 0.0016 18.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR51742.1 - 0.00081 19.7 0.0 0.0015 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR51742.1 - 0.0016 19.0 0.0 0.0032 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR51742.1 - 0.0022 18.2 0.0 0.005 17.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 CQR51742.1 - 0.0025 16.5 0.0 0.095 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 CQR51742.1 - 0.005 15.7 0.1 1.3 7.7 0.1 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class T2SSE PF00437.20 CQR51742.1 - 0.0057 15.7 0.0 0.0093 15.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_24 PF13479.6 CQR51742.1 - 0.016 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 CQR51742.1 - 0.018 14.2 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 CQR51742.1 - 0.019 14.7 0.0 0.03 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR51742.1 - 0.024 14.6 0.0 0.054 13.4 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain FtsK_SpoIIIE PF01580.18 CQR51742.1 - 0.036 13.4 0.0 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 CQR51742.1 - 0.04 13.8 0.0 0.082 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 CQR51742.1 - 0.057 13.0 0.0 0.46 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 CQR51742.1 - 0.069 13.4 0.3 0.65 10.3 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 CQR51742.1 - 0.085 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 CQR51742.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.15 CQR51742.1 - 0.12 11.2 0.0 0.25 10.1 0.0 1.6 2 0 0 2 2 2 0 Adenovirus IVa2 protein TruB_C PF09142.11 CQR51742.1 - 0.12 12.1 0.5 0.29 10.9 0.1 1.8 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal ATP_bind_1 PF03029.17 CQR51742.1 - 0.13 12.0 0.0 0.51 10.1 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CobU PF02283.16 CQR51742.1 - 0.14 11.8 0.0 7.2 6.1 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ATPase_2 PF01637.18 CQR51742.1 - 0.19 11.6 0.0 0.4 10.6 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea TerB PF05099.13 CQR51745.1 - 2e-25 89.4 0.0 2.4e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Tellurite resistance protein TerB DUF533 PF04391.12 CQR51745.1 - 0.00075 19.1 0.2 0.11 12.1 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF533) TerD PF02342.18 CQR51748.1 - 2.4e-71 239.1 0.1 2.6e-71 239.0 0.1 1.0 1 0 0 1 1 1 1 TerD domain TerD PF02342.18 CQR51750.1 - 1e-82 276.1 0.3 1.2e-82 276.0 0.3 1.0 1 0 0 1 1 1 1 TerD domain TerD PF02342.18 CQR51753.1 - 3.5e-83 277.7 0.0 3.9e-83 277.5 0.0 1.0 1 0 0 1 1 1 1 TerD domain TerD PF02342.18 CQR51756.1 - 1.8e-62 210.2 0.0 8.6e-53 178.6 0.0 2.1 2 0 0 2 2 2 2 TerD domain TerC PF03741.16 CQR51757.1 - 2.7e-53 180.3 6.2 2.7e-53 180.3 6.2 1.4 2 0 0 2 2 2 1 Integral membrane protein TerC family DUF475 PF04332.15 CQR51757.1 - 4.1e-09 36.7 7.5 1.6e-07 31.5 5.6 2.0 1 1 0 2 2 2 2 Protein of unknown function (DUF475) C-C_Bond_Lyase PF15617.6 CQR51759.1 - 6.6e-127 423.3 0.0 7.6e-127 423.1 0.0 1.0 1 0 0 1 1 1 1 C-C_Bond_Lyase of the TIM-Barrel fold PRTase_2 PF15609.6 CQR51761.1 - 1.3e-77 259.6 0.0 8.1e-77 257.0 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase TRSP PF12500.8 CQR51761.1 - 2.5e-38 131.0 0.0 2.7e-37 127.6 0.0 2.2 2 0 0 2 2 2 1 TRSP domain C terminus to PRTase_2 UPRTase PF14681.6 CQR51761.1 - 0.0077 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 CQR51761.1 - 0.094 12.2 0.0 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase domain PRTase_1 PF11202.8 CQR51764.1 - 8.7e-106 352.7 0.0 1e-105 352.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase (PRTase) PELOTA_1 PF15608.6 CQR51764.1 - 4.1e-35 119.5 0.0 7.9e-35 118.6 0.0 1.5 1 0 0 1 1 1 1 PELOTA RNA binding domain S6PP PF05116.13 CQR51765.1 - 4.1e-05 23.2 0.1 0.00055 19.5 0.1 2.3 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_3 PF08282.12 CQR51765.1 - 0.0016 18.3 0.0 1.7 8.4 0.0 2.4 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase ATPgrasp_Ter PF15632.6 CQR51768.1 - 1.9e-41 140.9 0.0 2.8e-41 140.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 CQR51768.1 - 0.00011 21.6 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 CQR51768.1 - 0.001 18.7 0.0 0.009 15.6 0.0 2.4 1 1 2 3 3 3 1 ATP-grasp domain ATP-grasp_3 PF02655.14 CQR51768.1 - 0.0011 19.1 0.0 0.045 13.8 0.0 2.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 CQR51768.1 - 0.0061 16.1 0.0 0.028 13.9 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TelA PF05816.11 CQR51772.1 - 1.4e-34 119.7 19.9 1.4e-34 119.7 19.9 1.3 1 1 0 1 1 1 1 Toxic anion resistance protein (TelA) Adenosine_kin PF04008.14 CQR51772.1 - 0.013 15.3 0.4 0.11 12.2 0.0 2.5 2 1 0 2 2 2 0 Adenosine specific kinase V-SNARE_C PF12352.8 CQR51772.1 - 0.12 12.6 1.9 0.58 10.5 0.8 2.5 1 1 1 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus DASH_Duo1 PF08651.10 CQR51772.1 - 0.15 11.8 0.1 0.15 11.8 0.1 5.0 5 2 1 6 6 6 0 DASH complex subunit Duo1 DUF4144 PF13642.6 CQR51772.1 - 0.74 10.4 3.4 23 5.6 0.6 2.8 2 1 0 2 2 2 0 protein structure with unknown function Form_Nir_trans PF01226.17 CQR51776.1 - 1.1e-63 214.8 23.5 1.2e-63 214.6 23.5 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Ost5 PF05251.12 CQR51776.1 - 0.0014 18.8 0.1 0.0014 18.8 0.1 3.5 4 0 0 4 4 4 1 Oligosaccharyltransferase subunit 5 DUF2951 PF11166.8 CQR51776.1 - 0.32 11.2 0.6 0.57 10.4 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) EMP70 PF02990.16 CQR51776.1 - 2 7.0 15.7 2.6 6.6 2.9 2.1 2 0 0 2 2 2 0 Endomembrane protein 70 OrfB_IS605 PF01385.19 CQR51779.1 - 5e-26 91.3 1.3 1.3e-25 89.9 1.3 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR51779.1 - 1.2e-21 76.3 0.5 2.7e-21 75.3 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR51779.1 - 3.2e-20 71.3 1.5 8e-20 70.1 1.5 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L32e PF01655.18 CQR51779.1 - 0.0011 19.4 3.4 0.0021 18.4 3.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L32 RuvC_1 PF18516.1 CQR51779.1 - 0.003 16.8 1.3 0.0058 15.9 1.3 1.4 1 0 0 1 1 1 1 RuvC nuclease domain P-mevalo_kinase PF04275.14 CQR51779.1 - 0.097 12.6 2.6 0.34 10.8 1.2 2.2 2 0 0 2 2 2 0 Phosphomevalonate kinase zf-ZPR1 PF03367.13 CQR51779.1 - 0.28 11.0 2.2 3 7.7 0.3 3.2 4 0 0 4 4 4 0 ZPR1 zinc-finger domain zf-RanBP PF00641.18 CQR51779.1 - 2.4 7.6 8.0 0.91 8.9 0.6 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Y1_Tnp PF01797.16 CQR51780.1 - 5e-41 139.6 2.6 5.6e-41 139.4 2.6 1.0 1 0 0 1 1 1 1 Transposase IS200 like CoA_trans PF01144.23 CQR51783.1 - 2.4e-40 138.2 2.0 2.7e-40 138.1 2.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hyd_C PF13336.6 CQR51783.1 - 2.8e-06 27.3 0.1 4.1e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain CoA_trans PF01144.23 CQR51786.1 - 4.3e-65 219.1 1.2 4.8e-65 219.0 1.2 1.0 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 CQR51786.1 - 0.002 16.5 0.1 0.0027 16.1 0.1 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter AcetylCoA_hydro PF02550.15 CQR51786.1 - 0.013 15.5 0.0 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain ADC PF06314.11 CQR51788.1 - 7.6e-65 218.8 0.0 8.7e-65 218.6 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Thiolase_N PF00108.23 CQR51790.1 - 2.6e-85 285.9 0.6 4.1e-85 285.3 0.6 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 CQR51790.1 - 1.5e-50 169.9 0.5 3.2e-50 168.9 0.5 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 CQR51790.1 - 3.4e-05 23.5 0.1 9.9e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 CQR51790.1 - 0.0068 16.6 0.1 0.02 15.1 0.1 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 CQR51790.1 - 0.3 11.0 1.5 11 6.0 0.1 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TPM_phosphatase PF04536.14 CQR51792.1 - 2.6e-14 53.5 0.2 8.8e-14 51.7 0.2 2.0 1 1 0 1 1 1 1 TPM domain EzrA PF06160.12 CQR51792.1 - 5.5e-08 31.4 17.4 8e-08 30.9 17.4 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Cauli_AT PF03233.13 CQR51792.1 - 0.41 10.6 1.8 1 9.3 0.4 2.3 2 0 0 2 2 2 0 Aphid transmission protein ApoLp-III PF07464.11 CQR51792.1 - 0.69 10.0 14.4 1.8 8.7 9.4 2.8 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) TMPIT PF07851.13 CQR51792.1 - 2.6 7.2 6.4 8.6 5.5 3.1 2.6 2 0 0 2 2 2 0 TMPIT-like protein DUF1759 PF03564.15 CQR51792.1 - 6.1 6.8 7.5 6.2 6.7 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1759) NPV_P10 PF05531.12 CQR51792.1 - 7.3 7.1 10.7 47 4.6 0.3 4.2 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein Cytochrom_B562 PF07361.11 CQR51792.1 - 8.7 7.1 11.9 1.7 9.4 1.0 4.2 3 1 1 4 4 4 0 Cytochrome b562 DUF1664 PF07889.12 CQR51792.1 - 8.9 6.4 10.5 20 5.3 2.5 3.9 2 2 1 4 4 4 0 Protein of unknown function (DUF1664) EAL PF00563.20 CQR51796.1 - 5e-68 229.2 0.0 8.1e-68 228.5 0.0 1.4 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR51796.1 - 3.6e-43 147.1 0.0 7.4e-43 146.1 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain SBP_bac_3 PF00497.20 CQR51796.1 - 1.2e-38 132.8 0.5 2.9e-38 131.5 0.5 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 PAS_3 PF08447.12 CQR51796.1 - 3.1e-21 75.4 0.1 1.1e-20 73.7 0.1 2.0 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 CQR51796.1 - 3.1e-11 43.5 0.0 2.9e-05 24.3 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 CQR51796.1 - 1.6e-09 37.7 0.1 0.0019 18.2 0.0 3.3 2 1 0 3 3 3 2 PAS fold PAS_4 PF08448.10 CQR51796.1 - 2.7e-07 30.8 0.2 0.014 15.7 0.0 3.3 2 1 1 3 3 3 2 PAS fold PAS_8 PF13188.7 CQR51796.1 - 3.3e-07 30.2 0.0 1.4e-06 28.2 0.0 2.2 2 0 0 2 2 1 1 PAS domain Spc7 PF08317.11 CQR51796.1 - 0.0002 20.4 0.6 0.0002 20.4 0.6 2.2 2 0 0 2 2 2 1 Spc7 kinetochore protein Spc24 PF08286.11 CQR51796.1 - 0.011 16.0 7.6 0.39 11.0 0.7 3.1 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 DUF3563 PF12086.8 CQR51796.1 - 0.012 15.3 0.0 0.033 13.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3563) UPF0113 PF03657.13 CQR51796.1 - 0.085 13.1 0.1 0.34 11.2 0.1 2.1 2 0 0 2 2 2 0 UPF0113 PUA domain APG6_N PF17675.1 CQR51796.1 - 0.11 13.0 9.3 0.09 13.3 3.2 2.5 2 0 0 2 2 2 0 Apg6 coiled-coil region GGDEF_2 PF17853.1 CQR51796.1 - 0.14 12.4 0.0 0.68 10.2 0.0 2.2 2 0 0 2 2 1 0 GGDEF-like domain HalX PF08663.10 CQR51796.1 - 0.26 11.6 12.5 2.3 8.6 0.7 2.9 2 0 0 2 2 2 0 HalX domain UPF0242 PF06785.11 CQR51796.1 - 0.38 10.8 5.3 0.58 10.2 0.9 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Scaffolding_pro PF11418.8 CQR51796.1 - 0.55 10.8 3.6 8.9 6.9 0.1 3.4 3 0 0 3 3 3 0 Phi29 scaffolding protein V-SNARE_C PF12352.8 CQR51796.1 - 0.98 9.7 5.6 17 5.8 0.4 2.6 2 0 0 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus HALZ PF02183.18 CQR51796.1 - 1.7 8.9 10.0 2.5 8.4 3.5 2.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper Lge1 PF11488.8 CQR51796.1 - 2.2 8.5 6.5 23 5.3 2.2 2.5 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 DivIC PF04977.15 CQR51796.1 - 4.4 7.1 10.2 10 5.9 3.6 2.8 2 0 0 2 2 2 0 Septum formation initiator ZapB PF06005.12 CQR51796.1 - 6.5 7.3 10.2 1.7 9.1 1.4 2.9 2 0 0 2 2 2 0 Cell division protein ZapB GGDEF PF00990.21 CQR51798.1 - 4.4e-39 133.8 0.0 7.4e-39 133.1 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 CQR51798.1 - 0.042 14.1 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 GGDEF-like domain GIDA PF01134.22 CQR51799.1 - 3.5e-10 39.5 0.5 3.7e-05 23.0 0.7 3.0 2 1 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 CQR51799.1 - 1.5e-09 37.5 0.3 5e-07 29.3 0.1 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 CQR51799.1 - 1.3e-07 31.1 1.6 0.0011 18.2 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 CQR51799.1 - 8.6e-07 28.0 0.0 5.2e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 CQR51799.1 - 2.3e-06 27.4 0.4 0.00067 19.3 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 CQR51799.1 - 4.8e-06 26.0 0.3 1.2e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 CQR51799.1 - 2.2e-05 23.7 0.0 3.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 CQR51799.1 - 3.2e-05 24.0 0.0 0.041 13.9 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 CQR51799.1 - 5.5e-05 23.3 0.0 0.00036 20.7 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 CQR51799.1 - 0.00045 19.6 0.2 0.11 11.7 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR51799.1 - 0.0013 18.2 0.1 0.23 10.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR51799.1 - 0.022 14.0 0.0 0.036 13.3 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NTP_transf_6 PF06042.11 CQR51802.1 - 2.8e-56 189.8 0.0 3.2e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase 5TM-5TMR_LYT PF07694.12 CQR51804.1 - 1.2e-42 145.3 20.7 2.4e-42 144.3 20.7 1.5 1 0 0 1 1 1 1 5TMR of 5TMR-LYT His_kinase PF06580.13 CQR51804.1 - 4.4e-25 87.8 0.4 9.3e-25 86.8 0.4 1.6 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR51804.1 - 3.3e-08 34.0 0.9 1.3e-07 32.2 0.5 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ECF-ribofla_trS PF07155.12 CQR51804.1 - 5.2e-06 26.6 18.3 5.2e-06 26.6 18.3 1.7 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 CQR51804.1 - 2.3e-05 24.6 15.2 2.3e-05 24.6 15.2 2.0 2 0 0 2 2 2 1 ECF transporter, substrate-specific component GAF_2 PF13185.6 CQR51804.1 - 0.00051 20.4 0.4 0.0044 17.3 0.0 2.5 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 CQR51804.1 - 0.027 15.1 0.1 0.088 13.4 0.0 1.8 2 0 0 2 2 2 0 GAF domain GAF_3 PF13492.6 CQR51804.1 - 0.03 14.6 0.0 0.072 13.4 0.0 1.6 1 0 0 1 1 1 0 GAF domain DUF3792 PF12670.7 CQR51804.1 - 0.4 10.9 18.6 0.38 10.9 6.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3792) LytTR PF04397.15 CQR51806.1 - 1.2e-32 112.0 0.4 2.1e-32 111.2 0.4 1.4 1 0 0 1 1 1 1 LytTr DNA-binding domain Response_reg PF00072.24 CQR51806.1 - 7.7e-23 80.8 0.1 1.3e-22 80.1 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain MFS_1 PF07690.16 CQR51808.1 - 1.5e-30 106.3 51.9 1.5e-15 57.0 25.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Vps54 PF07928.12 CQR51808.1 - 0.42 11.1 1.8 0.83 10.1 1.8 1.4 1 0 0 1 1 1 0 Vps54-like protein 2-oxoacid_dh PF00198.23 CQR51811.1 - 6.5e-75 251.6 0.0 8.4e-75 251.2 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 CQR51811.1 - 7.1e-24 83.4 1.2 1.3e-23 82.6 1.2 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 CQR51811.1 - 1.1e-08 35.2 1.9 2.9e-08 33.9 1.9 1.8 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 CQR51811.1 - 5.4e-08 32.5 1.0 3.2e-06 26.9 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 CQR51811.1 - 0.0021 18.8 0.5 0.7 10.6 0.0 2.6 1 1 1 2 2 2 2 HlyD family secretion protein Peptidase_M23 PF01551.22 CQR51811.1 - 0.042 14.0 1.2 11 6.3 0.3 2.6 1 1 1 2 2 2 0 Peptidase family M23 Ribosomal_60s PF00428.19 CQR51811.1 - 0.043 14.4 2.6 0.043 14.4 2.6 3.9 2 1 1 3 3 3 0 60s Acidic ribosomal protein E1_dh PF00676.20 CQR51813.1 - 6e-72 242.1 0.1 7.9e-72 241.7 0.1 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Transket_pyr PF02779.24 CQR51813.1 - 2.9e-56 190.0 0.0 5.6e-56 189.0 0.0 1.5 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain OxoGdeHyase_C PF16870.5 CQR51813.1 - 3.1e-39 134.1 0.0 9.5e-39 132.5 0.0 1.9 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase C-terminal 2-oxogl_dehyd_N PF16078.5 CQR51813.1 - 5.2e-06 26.0 0.5 0.00055 19.5 0.1 2.5 2 0 0 2 2 2 2 2-oxoglutarate dehydrogenase N-terminus SinI PF08671.10 CQR51815.1 - 5.2e-10 38.9 0.3 7.6e-10 38.4 0.3 1.2 1 0 0 1 1 1 1 Anti-repressor SinI DNAPolymera_Pol PF11590.8 CQR51815.1 - 0.1 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase catalytic subunit Pol HTH_3 PF01381.22 CQR51817.1 - 2.3e-15 56.4 0.0 7.4e-15 54.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix SinI PF08671.10 CQR51817.1 - 1.2e-12 47.3 0.4 2.1e-12 46.6 0.4 1.4 1 0 0 1 1 1 1 Anti-repressor SinI HTH_31 PF13560.6 CQR51817.1 - 1.7e-11 44.3 0.0 3e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR51817.1 - 9.1e-08 32.0 0.0 1.6e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR51817.1 - 0.00044 20.1 0.0 0.0011 18.7 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 CQR51817.1 - 0.0011 19.0 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_26 PF13443.6 CQR51817.1 - 0.0011 19.3 0.0 0.0018 18.6 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 CQR51817.1 - 0.011 15.4 0.1 0.91 9.4 0.0 2.5 3 0 0 3 3 3 0 Homeodomain-like domain HTH_37 PF13744.6 CQR51817.1 - 0.035 14.1 0.1 0.086 12.8 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_35 PF13693.6 CQR51817.1 - 0.044 13.8 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GH-E PF14410.6 CQR51817.1 - 0.056 13.9 0.2 0.13 12.7 0.1 1.7 2 0 0 2 2 2 0 HNH/ENDO VII superfamily nuclease with conserved GHE residues HTH_10 PF04967.12 CQR51817.1 - 0.063 13.1 0.1 2.8 7.8 0.0 2.7 3 0 0 3 3 3 0 HTH DNA binding domain Peptidase_M73 PF12389.8 CQR51819.1 - 1.8e-76 256.4 4.6 2e-76 256.2 4.6 1.0 1 0 0 1 1 1 1 Camelysin metallo-endopeptidase CusF_Ec PF11604.8 CQR51819.1 - 0.12 12.3 0.1 0.45 10.5 0.0 2.0 2 0 0 2 2 2 0 Copper binding periplasmic protein CusF N_BRCA1_IG PF16158.5 CQR51819.1 - 0.13 13.0 0.1 0.33 11.7 0.0 1.8 2 1 0 2 2 2 0 Ig-like domain from next to BRCA1 gene DUF1573 PF07610.11 CQR51819.1 - 0.24 11.5 2.0 2.3 8.3 0.4 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF1573) Peptidase_S24 PF00717.23 CQR51820.1 - 2.9e-07 30.3 0.2 5.6e-07 29.4 0.2 1.5 1 1 0 1 1 1 1 Peptidase S24-like DUF2975 PF11188.8 CQR51820.1 - 0.053 13.4 3.6 0.11 12.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Phage_holin_3_6 PF07332.11 CQR51820.1 - 0.79 9.8 5.9 4.8 7.2 0.3 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1206 PF06724.11 CQR51820.1 - 0.98 9.5 6.0 0.63 10.2 1.1 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) MscS_porin PF12795.7 CQR51822.1 - 0.00026 20.6 0.2 0.00026 20.6 0.2 2.9 2 1 0 2 2 2 1 Mechanosensitive ion channel porin domain FapA PF03961.13 CQR51822.1 - 0.00097 17.9 5.8 0.013 14.2 0.0 2.1 2 0 0 2 2 2 1 Flagellar Assembly Protein A DUF4407 PF14362.6 CQR51822.1 - 0.02 14.3 5.7 0.22 10.9 2.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) AAA_23 PF13476.6 CQR51822.1 - 0.044 14.3 6.2 0.29 11.6 3.6 2.1 2 0 0 2 2 2 0 AAA domain Methyltransf_32 PF13679.6 CQR51822.1 - 0.25 11.3 3.0 0.6 10.1 3.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF2052 PF09747.9 CQR51822.1 - 0.67 10.0 9.3 0.1 12.8 5.3 1.6 2 0 0 2 2 2 0 Coiled-coil domain containing protein (DUF2052) DUF1664 PF07889.12 CQR51822.1 - 0.86 9.7 5.8 1.5 8.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 CQR51822.1 - 6.7 5.5 17.3 0.63 8.9 0.2 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein Aldo_ket_red PF00248.21 CQR51824.1 - 6e-55 186.5 0.0 8.1e-55 186.1 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family PadR PF03551.14 CQR51828.1 - 2.7e-10 40.1 0.1 5.1e-10 39.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR51828.1 - 0.00042 20.4 0.1 0.00083 19.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 CQR51828.1 - 0.018 14.9 0.7 0.14 12.0 0.0 2.4 2 1 0 2 2 2 0 HxlR-like helix-turn-helix MFS_1 PF07690.16 CQR51830.1 - 6.2e-55 186.5 59.7 1.3e-54 185.4 56.8 2.5 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR51830.1 - 2.1e-20 73.1 44.9 1.4e-16 60.4 12.6 3.1 3 1 0 3 3 3 2 Sugar (and other) transporter TRI12 PF06609.13 CQR51830.1 - 1.8e-08 33.3 26.9 2.5e-08 32.8 26.9 1.2 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.6 CQR51830.1 - 0.01 14.4 47.7 0.065 11.8 10.0 4.1 2 1 3 5 5 5 0 MFS/sugar transport protein OATP PF03137.20 CQR51830.1 - 0.62 8.3 25.2 0.0096 14.3 8.0 3.3 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family GGDEF PF00990.21 CQR51832.1 - 8.1e-34 116.7 0.0 1.4e-33 115.9 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HD PF01966.22 CQR51832.1 - 1.4e-14 54.4 0.0 3e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR51832.1 - 5.8e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 HD domain GGDEF_2 PF17853.1 CQR51832.1 - 0.2 12.0 0.0 0.37 11.1 0.0 1.5 1 0 0 1 1 1 0 GGDEF-like domain Trns_repr_metal PF02583.17 CQR51834.1 - 1.9e-28 98.6 0.7 2.6e-28 98.2 0.7 1.1 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor MitMem_reg PF13012.6 CQR51834.1 - 0.055 13.9 0.0 0.071 13.5 0.0 1.2 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function HMA PF00403.26 CQR51836.1 - 5.7e-16 58.7 1.1 6.6e-16 58.5 1.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.17 CQR51836.1 - 0.048 13.5 0.0 0.1 12.4 0.0 1.6 1 1 0 1 1 1 0 Sulfurtransferase TusA Bromodomain PF00439.25 CQR51836.1 - 0.14 12.2 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Bromodomain E1-E2_ATPase PF00122.20 CQR51838.1 - 1.3e-60 204.1 1.9 2.7e-60 203.0 1.9 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 CQR51838.1 - 6.6e-45 154.0 7.7 1.1e-44 153.2 7.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 CQR51838.1 - 2.8e-34 117.4 0.1 1.2e-15 57.7 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 CQR51838.1 - 4.4e-05 23.4 3.2 0.0077 16.0 0.5 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR51838.1 - 0.00093 19.6 0.1 0.0043 17.5 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Sigma70_r2 PF04542.14 CQR51840.1 - 9.8e-18 63.7 0.3 1.8e-17 62.9 0.3 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR51840.1 - 2.4e-09 36.7 0.2 5e-09 35.7 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR51840.1 - 4.6e-09 35.7 0.6 9.8e-09 34.6 0.6 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR51840.1 - 2e-05 24.6 1.9 9.6e-05 22.3 1.9 1.8 1 1 0 1 1 1 1 ECF sigma factor HTH_16 PF12645.7 CQR51840.1 - 0.0099 15.9 1.6 0.018 15.1 1.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain NEXCaM_BD PF16644.5 CQR51840.1 - 0.07 13.4 0.3 2.5 8.4 0.0 2.5 1 1 0 2 2 2 0 Regulatory region of Na+/H+ exchanger NHE binds to calmodulin HTH_38 PF13936.6 CQR51840.1 - 0.076 12.8 0.7 0.39 10.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4367 PF14285.6 CQR51842.1 - 0.00027 21.3 0.2 0.17 12.3 0.0 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4367) DUF4131 PF13567.6 CQR51842.1 - 0.093 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Sigma_reg_N PF13800.6 CQR51842.1 - 0.13 12.6 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF4367 PF14285.6 CQR51844.1 - 0.044 14.2 0.3 0.22 12.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4367) EamA PF00892.20 CQR51846.1 - 1.8e-36 125.3 45.9 2.6e-19 69.8 17.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 CQR51846.1 - 0.00018 20.9 20.7 0.00023 20.6 20.7 1.1 1 0 0 1 1 1 1 Triose-phosphate Transporter family Herpes_LMP1 PF05297.11 CQR51846.1 - 5.8 6.0 12.8 1.1 8.4 8.6 1.8 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) Aminotran_1_2 PF00155.21 CQR51848.1 - 3.6e-26 92.2 0.0 4.4e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 CQR51848.1 - 2.6e-11 43.0 0.0 9e-10 38.1 0.0 3.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 CQR51848.1 - 1.7e-10 40.3 0.0 2.6e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase CT_C_D PF02682.16 CQR51848.1 - 0.0059 16.4 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D Nitroreductase PF00881.24 CQR51851.1 - 9.1e-21 74.6 0.2 2.6e-20 73.2 0.2 1.7 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR51851.1 - 0.029 14.0 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Putative TM nitroreductase ABC_tran PF00005.27 CQR51852.1 - 2.5e-26 92.8 0.0 4.4e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51852.1 - 2e-16 60.7 0.5 8.5e-12 45.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR51852.1 - 4.9e-06 26.1 0.0 0.069 12.6 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR51852.1 - 3.5e-05 23.7 0.0 0.18 11.5 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.6 CQR51852.1 - 0.00011 22.4 0.1 0.031 14.5 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 CQR51852.1 - 0.0013 18.4 0.4 0.0025 17.5 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR51852.1 - 0.0024 18.4 0.1 0.0047 17.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR51852.1 - 0.0025 17.6 0.2 0.0053 16.5 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 CQR51852.1 - 0.023 14.3 0.1 0.074 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 CQR51852.1 - 0.024 14.0 0.0 0.84 9.0 0.1 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 CQR51852.1 - 0.035 14.0 0.1 0.061 13.2 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 CQR51852.1 - 0.043 13.4 0.0 0.093 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR51852.1 - 0.047 14.1 0.1 0.091 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 CQR51852.1 - 0.052 13.8 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.6 CQR51852.1 - 0.066 13.9 0.0 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) NTPase_1 PF03266.15 CQR51852.1 - 0.077 12.9 0.0 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 NTPase T2SSE PF00437.20 CQR51852.1 - 0.7 8.9 3.3 1.4 7.9 0.4 2.4 2 1 1 3 3 3 0 Type II/IV secretion system protein ABC2_membrane_3 PF12698.7 CQR51854.1 - 8.8e-18 64.5 13.8 8.8e-18 64.5 13.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR51854.1 - 5.2e-15 55.4 17.7 5.2e-15 55.4 17.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR51854.1 - 5.9e-06 25.8 11.3 4.1e-05 23.0 11.3 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR51854.1 - 0.00014 21.9 5.3 0.00014 21.9 5.3 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein Thr_synth_N PF14821.6 CQR51854.1 - 0.016 15.4 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Threonine synthase N terminus HisKA_3 PF07730.13 CQR51856.1 - 9.6e-18 64.5 10.3 1.1e-17 64.3 8.2 2.2 2 1 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR51856.1 - 2.9e-08 34.2 0.2 6.4e-08 33.1 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR51856.1 - 5e-07 29.7 0.4 1.3e-06 28.3 0.3 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain DivIC PF04977.15 CQR51856.1 - 0.038 13.8 0.3 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 Septum formation initiator Trehalase_Ca-bi PF07492.11 CQR51856.1 - 0.074 12.8 0.2 0.16 11.7 0.2 1.5 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain SOG2 PF10428.9 CQR51856.1 - 0.09 12.0 0.6 0.13 11.5 0.6 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein HATPase_c_3 PF13589.6 CQR51856.1 - 0.15 11.8 0.2 0.36 10.7 0.2 1.6 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VHL_C PF17211.3 CQR51856.1 - 2.9 8.0 5.1 5.1 7.2 0.5 3.0 2 1 1 3 3 3 0 VHL box domain Response_reg PF00072.24 CQR51858.1 - 3.4e-25 88.4 0.1 5.7e-25 87.7 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR51858.1 - 3.8e-17 61.6 0.0 5.9e-17 61.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR51858.1 - 7.3e-07 28.8 0.0 1.7e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR51858.1 - 1.9e-06 27.3 0.0 4.1e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF742 PF05331.11 CQR51858.1 - 0.00099 18.9 0.0 0.0021 17.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_23 PF13384.6 CQR51858.1 - 0.001 18.8 0.1 0.0086 15.8 0.0 2.3 1 1 1 2 2 2 1 Homeodomain-like domain HTH_40 PF14493.6 CQR51858.1 - 0.003 18.0 0.0 0.07 13.6 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain DUF2089 PF09862.9 CQR51858.1 - 0.0041 17.2 0.0 0.0078 16.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_11 PF08279.12 CQR51858.1 - 0.0049 16.8 0.1 0.013 15.4 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 CQR51858.1 - 0.0078 16.3 1.0 0.024 14.7 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_29 PF13551.6 CQR51858.1 - 0.026 14.5 0.2 0.096 12.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.12 CQR51858.1 - 0.034 13.9 0.1 6.3 6.7 0.0 2.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.6 CQR51858.1 - 0.057 13.0 0.1 0.2 11.2 0.0 2.1 1 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Transposase_mut PF00872.18 CQR51860.1 - 1.8e-102 343.1 0.1 2.3e-102 342.7 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 CQR51860.1 - 1.4e-05 25.4 0.0 4.1e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 CQR51860.1 - 2.9e-05 24.3 0.0 0.026 14.8 0.1 2.4 1 1 0 2 2 2 2 DDE domain Latarcin PF10279.9 CQR51860.1 - 0.033 14.6 0.0 0.12 12.7 0.0 2.1 1 1 0 1 1 1 0 Latarcin precursor ABC_tran PF00005.27 CQR51863.1 - 1.1e-31 110.1 0.0 2.3e-31 109.2 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 CQR51863.1 - 1.2e-09 38.4 0.0 9.2e-05 22.4 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR51863.1 - 0.0013 18.4 0.1 0.0034 17.1 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR51863.1 - 0.0032 17.0 0.0 0.33 10.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR51863.1 - 0.0034 17.8 0.0 0.006 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR51863.1 - 0.0038 17.2 0.0 0.0095 15.9 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 CQR51863.1 - 0.0073 16.3 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain MMR_HSR1 PF01926.23 CQR51863.1 - 0.012 15.6 0.0 0.025 14.6 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 CQR51863.1 - 0.013 15.7 0.5 0.088 13.1 0.5 2.2 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 CQR51863.1 - 0.02 14.1 0.0 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 CQR51863.1 - 0.032 14.2 0.0 0.062 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 CQR51863.1 - 0.053 14.0 0.1 0.14 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 CQR51863.1 - 0.09 13.2 0.3 0.41 11.1 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 CQR51863.1 - 0.17 12.1 1.9 4 7.7 0.0 3.0 3 0 0 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 CQR51865.1 - 6.2e-29 101.0 16.9 6.2e-29 101.0 16.9 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bac_export_2 PF01312.19 CQR51865.1 - 0.61 9.2 7.8 0.84 8.8 7.8 1.2 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family CBP_BcsF PF11120.8 CQR51865.1 - 1.4 9.0 9.9 1.9 8.6 3.1 3.1 3 0 0 3 3 3 0 Cellulose biosynthesis protein BcsF Thiamine_BP PF01910.17 CQR51867.1 - 3.3e-24 84.6 0.1 3.7e-24 84.5 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein NMT1 PF09084.11 CQR51868.1 - 1.7e-75 253.7 0.6 2.1e-75 253.4 0.6 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 CQR51868.1 - 2.3e-05 24.2 0.3 0.013 15.2 0.1 2.2 2 0 0 2 2 2 2 NMT1-like family DUF3558 PF12079.8 CQR51868.1 - 0.16 12.0 1.7 0.26 11.3 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) B12-binding PF02310.19 CQR51870.1 - 1.9e-15 56.9 0.0 3.5e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 CQR51870.1 - 2.5e-07 31.0 0.0 6.6e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain HATPase_c PF02518.26 CQR51872.1 - 3.1e-29 101.7 0.3 7.6e-29 100.5 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR51872.1 - 3.4e-21 75.5 0.0 1.4e-20 73.6 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 CQR51872.1 - 3.3e-19 68.7 0.4 3.3e-19 68.7 0.4 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 CQR51872.1 - 7.5e-09 35.7 1.1 7.5e-09 35.7 1.1 3.6 3 1 0 3 3 3 1 Hpt domain LPP PF04728.13 CQR51872.1 - 0.28 11.6 1.2 1.1 9.7 0.4 2.4 2 1 0 2 2 2 0 Lipoprotein leucine-zipper Jnk-SapK_ap_N PF09744.9 CQR51872.1 - 0.7 10.1 6.4 1.6 8.9 6.4 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 TolA_bind_tri PF16331.5 CQR51872.1 - 5 7.3 12.3 0.23 11.6 4.5 2.8 3 1 0 3 3 3 0 TolA binding protein trimerisation Pyrid_ox_like PF16242.5 CQR51876.1 - 2.6e-12 46.6 0.0 3.1e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Putative_PNPOx PF01243.20 CQR51876.1 - 1.4e-10 41.2 0.0 1.9e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Acid_PPase PF12689.7 CQR51876.1 - 0.018 14.9 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Acid Phosphatase Pyridox_ox_2 PF12900.7 CQR51876.1 - 0.15 12.0 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Amb_V_allergen PF03913.13 CQR51878.1 - 0.0023 17.9 2.9 0.19 11.7 0.5 2.6 2 0 0 2 2 2 2 Amb V Allergen Trans_reg_C PF00486.28 CQR51879.1 - 3e-25 88.1 0.3 8e-25 86.7 0.1 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR51879.1 - 3.1e-19 69.2 0.0 6.1e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain zf-IS66 PF13005.7 CQR51879.1 - 0.12 12.8 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HisKA PF00512.25 CQR51882.1 - 4.6e-12 45.8 1.0 4.6e-12 45.8 1.0 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 CQR51882.1 - 7.5e-08 32.9 0.4 6.9e-07 29.8 0.4 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR51882.1 - 0.00011 22.5 0.1 0.00034 20.9 0.1 1.9 1 0 0 1 1 1 1 HAMP domain HemY_N PF07219.13 CQR51882.1 - 1.5 9.1 4.0 0.66 10.2 0.3 2.2 3 0 0 3 3 3 0 HemY protein N-terminus ABC_tran PF00005.27 CQR51884.1 - 6.9e-30 104.4 0.0 1.4e-29 103.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR51884.1 - 1.7e-12 47.7 3.3 9.8e-09 35.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR51884.1 - 0.0085 16.4 0.0 0.024 14.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR51884.1 - 0.011 16.2 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 CQR51884.1 - 0.015 14.9 0.0 0.038 13.6 0.0 1.7 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 CQR51884.1 - 0.016 15.6 0.0 0.034 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF4162 PF13732.6 CQR51884.1 - 0.03 15.0 0.1 0.097 13.4 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) ABC2_membrane_4 PF12730.7 CQR51886.1 - 1.2e-17 64.4 1.8 1.2e-17 64.4 1.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR51886.1 - 1.4e-07 31.1 11.7 1.4e-07 31.1 11.7 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR51886.1 - 0.00071 19.2 1.6 0.001 18.7 1.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR51888.1 - 1.1e-25 90.6 4.7 1.1e-25 90.6 4.7 1.4 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR51888.1 - 1.1e-06 28.2 17.5 8.4e-06 25.3 15.1 2.5 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR51888.1 - 4.4e-05 23.1 4.4 0.00013 21.6 4.4 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein HTH_5 PF01022.20 CQR51890.1 - 2.3e-17 62.6 0.3 3.5e-17 62.0 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR51890.1 - 3.5e-08 33.4 0.1 4.8e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR51890.1 - 0.0093 15.8 0.1 0.014 15.2 0.1 1.2 1 0 0 1 1 1 1 MarR family Arg_repressor PF01316.21 CQR51890.1 - 0.014 15.1 0.4 0.024 14.4 0.4 1.4 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain TrmB PF01978.19 CQR51890.1 - 0.026 14.4 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cation_efflux PF01545.21 CQR51892.1 - 8.7e-48 162.7 19.9 1.1e-47 162.3 19.9 1.1 1 0 0 1 1 1 1 Cation efflux family DUF3180 PF11377.8 CQR51892.1 - 0.14 12.3 10.1 0.031 14.4 5.6 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3180) Pex14_N PF04695.13 CQR51892.1 - 0.8 10.3 2.0 5 7.7 0.0 2.5 3 0 0 3 3 3 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Zip PF02535.22 CQR51892.1 - 2.5 7.3 28.3 0.46 9.7 23.0 2.2 2 1 0 2 2 2 0 ZIP Zinc transporter V_ATPase_I PF01496.19 CQR51892.1 - 9.9 3.9 7.7 14 3.5 7.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family E1-E2_ATPase PF00122.20 CQR51894.1 - 3.6e-47 160.2 0.2 3.6e-47 160.2 0.2 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 CQR51894.1 - 4.7e-40 138.1 1.6 1.3e-39 136.6 1.6 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 CQR51894.1 - 2.9e-09 37.2 2.1 4.4e-09 36.7 0.5 2.1 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 CQR51894.1 - 4.1e-06 26.7 0.0 9.8e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR51894.1 - 9e-06 26.2 0.1 0.00011 22.6 0.0 2.9 2 2 0 2 2 2 1 haloacid dehalogenase-like hydrolase PhoH PF02562.16 CQR51894.1 - 0.074 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein MCPsignal PF00015.21 CQR51897.1 - 4.9e-41 140.4 40.3 5e-39 133.9 21.9 4.0 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR51897.1 - 7e-24 85.0 0.8 7e-24 85.0 0.8 3.7 2 1 1 3 3 3 1 Cache domain HAMP PF00672.25 CQR51897.1 - 7.1e-13 48.7 0.1 1.2e-11 44.8 0.0 3.3 3 0 0 3 3 3 1 HAMP domain EzrA PF06160.12 CQR51897.1 - 0.0026 16.0 5.2 0.0026 16.0 5.2 2.9 2 2 0 2 2 2 1 Septation ring formation regulator, EzrA ApoA-II PF04711.13 CQR51897.1 - 0.011 15.9 0.4 5.1 7.3 0.0 4.2 3 0 0 3 3 3 0 Apolipoprotein A-II (ApoA-II) Med30 PF11315.8 CQR51897.1 - 0.019 15.2 1.0 0.019 15.2 1.0 2.5 2 1 0 2 2 2 0 Mediator complex subunit 30 FLILHELTA PF10306.9 CQR51897.1 - 0.17 12.3 0.0 0.59 10.6 0.0 2.0 1 0 0 1 1 1 0 Hypothetical protein FLILHELTA TRIQK PF15168.6 CQR51897.1 - 0.17 11.8 1.5 0.43 10.5 0.0 2.4 2 0 0 2 2 2 0 Triple QxxK/R motif-containing protein family DUF3671 PF12420.8 CQR51897.1 - 0.43 10.7 3.9 1.1 9.4 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function Med9 PF07544.13 CQR51897.1 - 0.62 10.2 6.1 0.99 9.5 0.1 3.4 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF1848 PF08902.11 CQR51897.1 - 0.67 9.6 4.7 8.6 6.0 0.7 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1848) Tape_meas_lam_C PF09718.10 CQR51897.1 - 2.2 8.5 15.8 0.91 9.7 0.5 4.5 4 2 0 4 4 4 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Fib_alpha PF08702.10 CQR51897.1 - 3.5 7.8 19.4 1.3 9.2 0.9 4.0 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family WXG100 PF06013.12 CQR51897.1 - 5.7 7.3 22.4 12 6.2 0.1 6.6 3 2 1 5 5 5 0 Proteins of 100 residues with WXG DUF948 PF06103.11 CQR51897.1 - 7.4 6.9 32.3 2.7 8.3 0.6 5.9 2 1 4 7 7 7 0 Bacterial protein of unknown function (DUF948) MRPL52 PF18699.1 CQR51897.1 - 8.3 6.7 6.3 54 4.1 0.2 4.1 4 0 0 4 4 4 0 Mitoribosomal protein mL52 Ldh_1_N PF00056.23 CQR51899.1 - 3.8e-39 134.0 0.3 8.4e-39 132.9 0.3 1.6 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 CQR51899.1 - 2e-24 86.4 0.0 3.3e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Shikimate_DH PF01488.20 CQR51899.1 - 6.9e-05 22.9 0.1 0.00029 20.9 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 CQR51899.1 - 0.0044 17.6 0.7 0.047 14.3 0.0 2.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 CQR51899.1 - 0.01 15.5 0.0 0.039 13.6 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DAO PF01266.24 CQR51899.1 - 0.024 14.2 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR51899.1 - 0.07 13.4 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 CQR51899.1 - 0.073 12.3 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 CQR51899.1 - 0.098 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 CQR51899.1 - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 CQR51899.1 - 0.13 12.7 0.0 0.32 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding DUF1453 PF07301.11 CQR51901.1 - 2.2e-53 180.2 13.5 2.5e-53 180.0 13.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1453) DUF962 PF06127.11 CQR51901.1 - 0.53 10.4 4.9 2.5 8.2 4.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF962) Transgly_assoc PF04226.13 CQR51903.1 - 5.1e-13 49.1 9.6 5.1e-13 49.1 9.6 2.3 1 1 1 2 2 2 1 Transglycosylase associated protein Gly-zipper_Omp PF13488.6 CQR51903.1 - 2 8.5 13.4 1.5 8.9 10.8 2.0 2 0 0 2 2 2 0 Glycine zipper Lactonase PF10282.9 CQR51905.1 - 5.5e-112 374.4 0.0 6.2e-112 374.3 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SBP56 PF05694.11 CQR51905.1 - 0.014 14.3 0.0 0.19 10.5 0.0 2.0 2 0 0 2 2 2 0 56kDa selenium binding protein (SBP56) Chlorophyllase2 PF12740.7 CQR51907.1 - 4.2e-10 39.0 0.0 1.3e-09 37.3 0.0 1.8 2 0 0 2 2 2 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 CQR51907.1 - 3.2e-07 29.7 0.2 1.8e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 Chlorophyllase DUF4232 PF14016.6 CQR51907.1 - 0.048 13.8 0.5 0.13 12.4 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) PAF-AH_p_II PF03403.13 CQR51907.1 - 0.14 10.7 0.0 8.1 4.8 0.0 2.1 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Phage_holin_3_2 PF04550.12 CQR51907.1 - 1.2 9.7 7.4 0.82 10.3 5.0 1.9 1 1 1 2 2 2 0 Phage holin family 2 Promethin PF16015.5 CQR51907.1 - 4.1 7.4 8.5 1.6 8.7 5.6 1.8 2 0 0 2 2 2 0 Promethin SBP_bac_11 PF13531.6 CQR51909.1 - 9.5e-48 162.9 0.0 1.4e-47 162.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR51909.1 - 2.7e-16 60.4 3.9 2.7e-16 60.4 3.9 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR51909.1 - 1.6e-09 38.0 0.8 3.9e-08 33.4 0.8 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR51909.1 - 4.5e-07 29.5 0.1 7.5e-07 28.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 CQR51909.1 - 0.014 14.5 0.0 0.029 13.5 0.0 1.6 1 0 0 1 1 1 0 PBP superfamily domain DUF3558 PF12079.8 CQR51909.1 - 0.3 11.0 2.4 0.47 10.4 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) LPAM_2 PF13627.6 CQR51909.1 - 0.7 9.8 3.0 1.4 8.9 3.0 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site BPD_transp_1 PF00528.22 CQR51912.1 - 1.2e-26 93.6 10.9 1.2e-26 93.6 10.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Col_cuticle_N PF01484.17 CQR51912.1 - 0.36 10.9 2.0 6.8 6.8 0.0 2.7 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain BPD_transp_1 PF00528.22 CQR51914.1 - 7e-15 55.2 10.2 7e-15 55.2 10.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2273 PF10031.9 CQR51914.1 - 0.032 14.3 0.2 0.032 14.3 0.2 3.5 5 0 0 5 5 5 0 Small integral membrane protein (DUF2273) DUF2292 PF10055.9 CQR51916.1 - 1.9e-16 59.4 0.1 2.3e-16 59.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized small protein (DUF2292) Response_reg PF00072.24 CQR51918.1 - 2.6e-28 98.4 0.2 4.5e-28 97.7 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR51918.1 - 9e-23 80.2 0.0 1.9e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR51920.1 - 1.5e-27 96.3 0.2 2.6e-27 95.6 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR51920.1 - 3.8e-16 59.2 0.2 1.2e-15 57.6 0.2 1.9 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 CQR51920.1 - 4.1e-15 55.6 0.2 1.2e-14 54.1 0.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR51920.1 - 4.4e-05 23.3 0.1 8.4e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR51920.1 - 0.002 18.0 0.1 0.0046 16.9 0.1 1.6 1 0 0 1 1 1 1 GHKL domain Peptidase_S41 PF03572.18 CQR51922.1 - 1.4e-25 89.8 0.0 2.5e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S41 Tricorn_C1 PF14684.6 CQR51922.1 - 4.3e-11 42.7 0.0 1e-10 41.5 0.0 1.6 1 0 0 1 1 1 1 Tricorn protease C1 domain TNT PF14021.6 CQR51922.1 - 0.019 15.5 0.0 0.072 13.7 0.0 1.9 1 0 0 1 1 1 0 Tuberculosis necrotizing toxin Glyoxalase PF00903.25 CQR51924.1 - 3e-07 30.7 0.0 5.3e-07 29.9 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DpnII PF04556.12 CQR51924.1 - 0.11 11.8 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 DpnII restriction endonuclease NAD_binding_10 PF13460.6 CQR51929.1 - 5.1e-37 127.5 0.1 6.2e-37 127.3 0.1 1.0 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR51929.1 - 4.1e-11 42.9 0.0 5e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 CQR51929.1 - 3.1e-08 33.4 0.1 4.1e-08 33.0 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 CQR51929.1 - 0.00011 21.4 0.0 0.00022 20.4 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain DapB_N PF01113.20 CQR51929.1 - 0.00035 20.7 0.0 0.00061 19.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 CQR51929.1 - 0.00082 19.9 0.8 0.0033 18.0 0.2 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 CQR51929.1 - 0.00084 18.8 0.2 0.0014 18.1 0.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase 3Beta_HSD PF01073.19 CQR51929.1 - 0.0021 17.1 0.0 0.0031 16.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 CQR51929.1 - 0.012 15.9 0.1 0.023 14.9 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 CQR51929.1 - 0.015 15.2 0.1 0.023 14.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PFK PF00365.20 CQR51929.1 - 0.018 14.4 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Phosphofructokinase NAD_binding_4 PF07993.12 CQR51929.1 - 0.04 13.1 0.0 0.056 12.6 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein GDP_Man_Dehyd PF16363.5 CQR51929.1 - 0.086 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Toluene_X PF03349.16 CQR51929.1 - 0.21 10.1 0.0 0.27 9.7 0.0 1.1 1 0 0 1 1 1 0 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y1_Tnp PF01797.16 CQR51930.1 - 1.8e-38 131.4 1.3 2.1e-38 131.1 1.3 1.1 1 0 0 1 1 1 1 Transposase IS200 like DEDD_Tnp_IS110 PF01548.17 CQR51934.1 - 3.9e-25 88.5 0.0 4.6e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Transposase Ribonuc_2-5A PF06479.12 CQR51934.1 - 0.064 13.4 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease 2-5A Rop-like PF05082.13 CQR51934.1 - 0.12 12.2 0.5 0.21 11.4 0.5 1.4 1 0 0 1 1 1 0 Rop-like Transposase_20 PF02371.16 CQR51936.1 - 1.1e-14 54.5 0.0 1.8e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family HbrB PF08539.11 CQR51936.1 - 0.075 13.0 0.1 0.088 12.8 0.1 1.2 1 0 0 1 1 1 0 HbrB-like DSX_dimer PF08828.10 CQR51938.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR51938.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain Carb_kinase PF01256.17 CQR51940.1 - 1.5e-50 172.0 2.7 2.5e-50 171.2 2.7 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 CQR51940.1 - 8e-38 130.0 4.3 8e-38 130.0 4.3 2.8 2 1 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 CQR51940.1 - 0.0013 18.2 0.1 0.0026 17.2 0.1 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 CQR51940.1 - 0.063 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Asparaginase_C PF17763.1 CQR51940.1 - 0.12 12.6 0.3 27 5.0 0.1 3.5 2 1 0 3 3 3 0 Glutaminase/Asparaginase C-terminal domain adh_short_C2 PF13561.6 CQR51944.1 - 9.6e-58 195.5 0.0 1.3e-57 195.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR51944.1 - 6.7e-48 162.7 0.0 7.9e-48 162.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR51944.1 - 3.6e-06 27.0 0.0 4.8e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 KR domain DUF4269 PF14091.6 CQR51946.1 - 1e-53 181.7 0.0 1.2e-53 181.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) Acetyltransf_1 PF00583.25 CQR51948.1 - 3e-11 43.6 0.1 3.6e-11 43.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR51948.1 - 3.2e-09 36.8 0.0 3.8e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR51948.1 - 1.2e-06 28.4 0.0 1.7e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 CQR51948.1 - 2.7e-06 27.6 0.1 4.3e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR51948.1 - 4e-06 27.2 0.0 4.9e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR51948.1 - 3.2e-05 24.0 0.0 5.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 CQR51948.1 - 0.00013 22.0 0.0 0.0023 18.0 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR51948.1 - 0.011 16.5 0.0 0.013 16.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_24 PF13412.6 CQR51948.1 - 0.011 15.3 0.0 0.077 12.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PanZ PF12568.8 CQR51948.1 - 0.097 12.4 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 CQR51948.1 - 0.15 12.2 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SDH_beta PF03315.15 CQR51949.1 - 4.2e-16 59.7 1.1 1.8e-11 44.7 0.3 2.2 1 1 1 2 2 2 2 Serine dehydratase beta chain ACT_4 PF13291.6 CQR51949.1 - 0.13 12.9 0.0 0.26 11.9 0.0 1.4 1 0 0 1 1 1 0 ACT domain SDH_alpha PF03313.15 CQR51951.1 - 6.2e-73 245.7 9.6 7.1e-73 245.5 9.6 1.0 1 0 0 1 1 1 1 Serine dehydratase alpha chain MmgE_PrpD PF03972.14 CQR51951.1 - 0.00029 19.5 1.9 0.00037 19.1 1.9 1.2 1 0 0 1 1 1 1 MmgE/PrpD family TraY PF05509.11 CQR51951.1 - 0.047 13.7 0.2 0.078 13.0 0.2 1.3 1 0 0 1 1 1 0 TraY domain Ish1 PF10281.9 CQR51953.1 - 0.037 14.3 0.1 0.08 13.3 0.0 1.7 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Bcl-2_3 PF15286.6 CQR51953.1 - 0.12 13.0 0.0 0.16 12.7 0.0 1.1 1 0 0 1 1 1 0 Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like DUF2196 PF09962.9 CQR51955.1 - 4.2e-31 106.7 3.4 4.6e-31 106.6 3.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) HNH_5 PF14279.6 CQR51957.1 - 2.5e-08 33.6 3.7 2.5e-08 33.6 3.7 2.8 3 0 0 3 3 3 1 HNH endonuclease HNH PF01844.23 CQR51957.1 - 7.2e-08 32.5 4.1 7.2e-08 32.5 4.1 2.3 3 0 0 3 3 3 1 HNH endonuclease HNH_4 PF13395.6 CQR51957.1 - 4.4e-05 23.3 0.0 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 HNH endonuclease zf-FCS PF06467.14 CQR51957.1 - 0.0048 16.8 4.1 1.1 9.2 0.1 3.1 3 0 0 3 3 3 2 MYM-type Zinc finger with FCS sequence motif His_Me_b4a2 PF18275.1 CQR51957.1 - 0.026 14.6 2.1 0.026 14.6 2.1 2.4 3 0 0 3 3 3 0 His-Me finger endonuclease beta4-alpha2 domain Peripla_BP_3 PF13377.6 CQR51962.1 - 2e-39 135.6 0.0 3.4e-39 134.8 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR51962.1 - 9.6e-25 87.5 0.0 1.5e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR51962.1 - 3e-14 53.2 0.0 4.1e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 CQR51962.1 - 3.7e-12 45.8 0.2 8.8e-12 44.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_3 PF01381.22 CQR51962.1 - 0.0067 16.5 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 CQR51962.1 - 0.064 13.1 0.1 1.9 8.4 0.0 2.3 1 1 1 2 2 2 0 Homeodomain-like domain HTH_38 PF13936.6 CQR51962.1 - 0.088 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 CQR51962.1 - 0.09 12.6 0.0 17 5.3 0.0 2.6 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.6 CQR51962.1 - 0.12 11.9 0.0 0.81 9.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Glyco_hydro_30 PF02055.16 CQR51964.1 - 2.1e-84 283.5 0.0 2.5e-84 283.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 TIM-barrel domain Glyco_hydro_30C PF17189.4 CQR51964.1 - 5e-15 55.5 0.0 9.9e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 beta sandwich domain LVIVD PF08309.11 CQR51964.1 - 0.081 12.2 0.1 0.19 11.1 0.1 1.6 1 0 0 1 1 1 0 LVIVD repeat Glyco_hydr_30_2 PF14587.6 CQR51964.1 - 0.093 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 O-Glycosyl hydrolase family 30 Beta-lactamase PF00144.24 CQR51968.1 - 1.1e-65 222.1 0.1 1.5e-65 221.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase Phage_holin_3_7 PF05449.11 CQR51968.1 - 0.23 11.5 1.8 0.47 10.5 1.0 1.9 1 1 0 1 1 1 0 Putative 3TM holin, Phage_holin_3 BPD_transp_1 PF00528.22 CQR51970.1 - 3.7e-12 46.4 13.2 3.7e-12 46.4 13.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR51972.1 - 1.2e-14 54.4 23.6 5e-14 52.5 23.6 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR51974.1 - 5.1e-41 141.3 3.2 5.1e-41 141.3 3.2 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein DNA_ligase_IV PF11411.8 CQR51974.1 - 0.7 10.1 2.7 27 5.0 0.3 2.8 2 0 0 2 2 2 0 DNA ligase IV His_kinase PF06580.13 CQR51976.1 - 6.1e-21 74.5 0.4 6.1e-21 74.5 0.4 2.8 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR51976.1 - 1.3e-09 38.3 0.1 2.4e-09 37.3 0.1 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR51976.1 - 5.4e-09 36.6 0.0 1.5e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR51976.1 - 0.00037 20.8 0.1 0.0014 19.0 0.0 2.1 2 0 0 2 2 2 1 HAMP domain Sdh5 PF03937.16 CQR51976.1 - 0.085 12.8 1.0 1.9 8.5 0.0 3.3 4 0 0 4 4 4 0 Flavinator of succinate dehydrogenase DUF948 PF06103.11 CQR51976.1 - 0.12 12.6 0.7 0.26 11.6 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) 7tm_7 PF08395.12 CQR51976.1 - 0.19 10.9 1.3 3.1 6.9 0.0 2.1 2 0 0 2 2 2 0 7tm Chemosensory receptor Response_reg PF00072.24 CQR51978.1 - 5.3e-25 87.8 0.0 1.4e-24 86.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR51978.1 - 1.7e-18 66.7 3.5 9.2e-18 64.3 0.1 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR51978.1 - 8.4e-14 51.2 0.0 4.6e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR51978.1 - 3.1e-05 24.2 0.0 0.00014 22.0 0.0 2.2 2 0 0 2 2 2 1 GGDEF-like domain Antibiotic_NAT PF02522.14 CQR51979.1 - 8.3e-77 257.9 0.0 9.7e-77 257.7 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase DUF5634_N PF18672.1 CQR51979.1 - 0.2 11.4 0.0 0.38 10.5 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5634) DUF438 PF04282.13 CQR51979.1 - 0.22 11.5 0.0 0.94 9.5 0.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF438) His_Phos_1 PF00300.22 CQR51982.1 - 3.2e-57 193.4 0.0 3.6e-57 193.2 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) MFS_3 PF05977.13 CQR51984.1 - 5.9e-24 84.4 28.7 7.5e-24 84.0 28.7 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 CQR51984.1 - 2.2e-22 79.4 57.4 4.9e-13 48.7 21.8 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily HTH_5 PF01022.20 CQR51986.1 - 1.3e-12 47.4 0.1 2.9e-12 46.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR51986.1 - 7.6e-11 41.9 0.2 3.3e-10 39.9 0.1 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_IclR PF09339.10 CQR51986.1 - 2.4e-07 30.4 1.6 5.3e-07 29.3 0.3 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.6 CQR51986.1 - 0.00029 20.6 0.1 0.00058 19.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR51986.1 - 0.0019 18.0 0.1 0.0048 16.7 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR51986.1 - 0.0044 16.6 0.1 0.0096 15.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 CQR51986.1 - 0.015 15.2 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 CQR51986.1 - 0.018 15.5 0.0 0.042 14.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR51986.1 - 0.031 14.2 0.1 0.061 13.3 0.1 1.5 1 0 0 1 1 1 0 HTH domain RP-C PF03428.13 CQR51986.1 - 0.079 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain GntR PF00392.21 CQR51986.1 - 0.084 12.5 0.0 0.24 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 CQR51986.1 - 0.089 13.2 0.1 0.18 12.2 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 CQR51986.1 - 0.14 11.9 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain SLH PF00395.20 CQR51987.1 - 1.2e-39 134.0 5.9 1.5e-14 53.7 0.4 4.1 3 0 0 3 3 3 3 S-layer homology domain 5_nucleotid_C PF02872.18 CQR51987.1 - 7e-38 130.3 4.1 9e-38 130.0 0.2 3.3 4 0 0 4 4 4 1 5'-nucleotidase, C-terminal domain LTD PF00932.19 CQR51987.1 - 2.7e-20 72.8 1.7 2e-19 70.0 0.2 3.1 2 0 0 2 2 2 1 Lamin Tail Domain Metallophos PF00149.28 CQR51987.1 - 2.4e-11 44.6 0.2 5.4e-11 43.4 0.1 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Exo_endo_phos PF03372.23 CQR51987.1 - 2e-06 27.5 0.1 3.8e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Fn3_assoc PF13287.6 CQR51987.1 - 2.8e-05 24.2 1.0 0.00011 22.3 1.0 2.1 1 0 0 1 1 1 1 Fn3 associated PK_C PF02887.16 CQR51987.1 - 0.01 16.0 0.0 0.46 10.7 0.0 2.8 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain tRNA-synt_2b PF00587.25 CQR51989.1 - 1.2e-26 93.8 0.0 1.8e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 CQR51989.1 - 1.3e-17 64.0 2.7 1.3e-17 64.0 2.7 1.8 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Nucleocap_ssRNA PF11128.8 CQR51989.1 - 0.063 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Plant viral coat protein nucleocapsid TipAS PF07739.13 CQR51989.1 - 0.22 12.1 0.8 0.6 10.7 0.8 1.7 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain DUF4201 PF13870.6 CQR51989.1 - 1.2 8.9 6.0 4.6 6.9 6.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) FMN_red PF03358.15 CQR51990.1 - 7.5e-29 100.5 0.1 1e-28 100.1 0.1 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 CQR51990.1 - 8.8e-08 32.1 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 CQR51990.1 - 0.13 12.5 0.0 0.26 11.5 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin domain Ribonuc_red_sm PF00268.21 CQR51994.1 - 1.6e-69 234.5 10.4 1.9e-69 234.2 10.4 1.0 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain FA_desaturase_2 PF03405.14 CQR51994.1 - 0.0061 15.4 0.1 0.45 9.3 0.0 2.2 2 0 0 2 2 2 2 Fatty acid desaturase Phenol_Hydrox PF02332.18 CQR51994.1 - 0.02 14.5 0.5 0.029 13.9 0.5 1.3 1 0 0 1 1 1 0 Methane/Phenol/Toluene Hydroxylase KTSC PF13619.6 CQR51994.1 - 0.058 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 KTSC domain Ribonuc_red_lgC PF02867.15 CQR51996.1 - 3.9e-143 477.7 0.0 4.5e-124 414.9 0.0 2.2 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 CQR51996.1 - 4.3e-19 68.3 0.4 2.1e-18 66.1 0.3 2.3 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 CQR51996.1 - 0.015 15.9 0.0 0.038 14.6 0.0 1.8 1 0 0 1 1 1 0 ATP cone domain RNR_N PF08343.10 CQR51996.1 - 0.094 12.8 0.2 0.37 10.8 0.2 2.0 1 0 0 1 1 1 0 Ribonucleotide reductase N-terminal Fer4_12 PF13353.6 CQR51998.1 - 3.5e-41 140.7 0.0 4e-41 140.5 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR51998.1 - 1.2e-21 77.0 0.0 1.6e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 CQR51998.1 - 1.1e-06 29.1 0.0 1.3e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF386 PF04074.12 CQR51998.1 - 0.21 11.5 0.0 0.31 11.0 0.0 1.2 1 0 0 1 1 1 0 YhcH/YjgK/YiaL NRDD PF13597.6 CQR52000.1 - 8.1e-188 625.7 0.0 9.2e-188 625.5 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DUF3029 PF11230.8 CQR52000.1 - 3.3e-08 32.4 0.2 1.3e-07 30.4 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3029) Gly_radical PF01228.21 CQR52000.1 - 0.00034 21.1 0.1 0.0016 19.0 0.0 2.2 2 0 0 2 2 2 1 Glycine radical HypA PF01155.19 CQR52000.1 - 0.1 12.6 0.2 0.35 10.9 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Beach PF02138.18 CQR52000.1 - 0.11 11.9 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Beige/BEACH domain NUMOD3 PF07460.11 CQR52002.1 - 0.18 12.0 0.0 0.26 11.5 0.0 1.2 1 0 0 1 1 1 0 NUMOD3 motif (2 copies) Thiamine_BP PF01910.17 CQR52004.1 - 3.4e-30 103.8 0.1 3.8e-30 103.6 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein AP_endonuc_2 PF01261.24 CQR52006.1 - 9.7e-21 74.2 0.0 1.6e-20 73.5 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 CQR52006.1 - 0.12 11.2 0.0 1.1 8.0 0.0 1.9 2 0 0 2 2 2 0 D-mannonate dehydratase (UxuA) Erf4 PF10256.9 CQR52008.1 - 0.015 15.4 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 7/ERF4 family Holin_BhlA PF10960.8 CQR52008.1 - 0.073 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 BhlA holin family CRPA PF05745.11 CQR52008.1 - 0.18 11.8 10.4 0.93 9.5 2.8 2.4 1 1 2 3 3 3 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) CPBP PF02517.16 CQR52008.1 - 9.5 6.7 10.1 5.3 7.5 5.4 2.3 2 1 0 2 2 2 0 CPBP intramembrane metalloprotease SBP_bac_1 PF01547.25 CQR52010.1 - 4e-18 66.4 12.1 5.1e-18 66.1 10.3 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR52012.1 - 1.4e-17 64.0 14.2 1.4e-17 64.0 14.2 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52014.1 - 1.6e-11 44.3 13.8 1.6e-11 44.3 13.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Response_reg PF00072.24 CQR52016.1 - 7.3e-23 80.9 0.0 1.5e-22 79.9 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52016.1 - 1.5e-22 79.7 0.0 4.3e-22 78.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52016.1 - 6.5e-19 67.6 0.0 1.3e-09 37.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family His_kinase PF06580.13 CQR52018.1 - 9.9e-21 73.9 2.0 1.4e-20 73.4 0.2 2.2 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR52018.1 - 4.9e-09 36.4 0.0 1.1e-08 35.3 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR52018.1 - 0.031 14.8 0.0 0.08 13.5 0.0 1.7 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PsbM PF05151.12 CQR52018.1 - 0.34 10.7 2.5 0.74 9.7 2.5 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre M protein (PsbM) FAD_oxidored PF12831.7 CQR52020.1 - 1.3e-91 308.1 0.0 2.2e-91 307.4 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR52020.1 - 5.2e-06 25.8 6.9 5.7e-06 25.7 5.2 1.9 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 CQR52020.1 - 2e-05 24.4 0.7 2e-05 24.4 0.7 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR52020.1 - 2.4e-05 24.5 1.3 2.4e-05 24.5 1.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 CQR52020.1 - 0.0006 19.0 3.0 0.00096 18.3 3.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 CQR52020.1 - 0.0089 14.8 0.8 0.015 14.0 0.8 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 CQR52020.1 - 0.0094 16.5 3.3 2.6 8.7 0.8 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 CQR52020.1 - 0.013 14.8 4.9 0.016 14.5 2.0 2.1 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR52020.1 - 0.055 12.7 0.6 0.11 11.8 0.6 1.4 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 CQR52020.1 - 0.24 10.6 0.1 0.86 8.8 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 CQR52020.1 - 0.41 9.4 2.8 5.5 5.7 1.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 CQR52020.1 - 0.57 9.4 6.0 0.036 13.4 0.6 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 CQR52020.1 - 4.3 6.3 4.9 0.9 8.5 1.2 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein ASCH PF04266.14 CQR52024.1 - 7.2e-08 33.0 0.0 1.2e-07 32.3 0.0 1.4 1 1 0 1 1 1 1 ASCH domain KRTAP PF11759.8 CQR52032.1 - 0.02 15.4 45.9 1.8e+04 -29.4 45.9 6.7 1 1 0 1 1 1 0 Keratin-associated matrix Hydrolase_4 PF12146.8 CQR52034.1 - 3.9e-16 59.0 0.5 1.9e-08 33.9 0.3 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR52034.1 - 4.8e-13 49.3 0.2 4.2e-08 33.2 0.2 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 CQR52034.1 - 6.9e-13 48.8 0.1 3.1e-07 30.3 0.1 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 CQR52034.1 - 8.8e-13 48.2 0.1 2e-12 47.0 0.1 1.6 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 CQR52034.1 - 1.6e-09 38.7 3.1 1.5e-08 35.5 1.5 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family FSH1 PF03959.13 CQR52034.1 - 5.1e-07 29.6 0.0 8.2e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) DLH PF01738.18 CQR52034.1 - 5.7e-07 29.3 0.8 0.00014 21.5 0.1 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 CQR52034.1 - 0.00012 22.0 0.0 0.25 11.1 0.0 2.7 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase DUF829 PF05705.14 CQR52034.1 - 0.0038 17.2 0.0 0.33 10.8 0.0 2.3 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) Abhydrolase_4 PF08386.10 CQR52034.1 - 0.014 15.4 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein BAAT_C PF08840.11 CQR52034.1 - 0.026 14.4 0.1 0.41 10.5 0.1 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Cutinase PF01083.22 CQR52034.1 - 0.08 12.9 0.2 0.57 10.1 0.0 2.3 2 1 0 2 2 2 0 Cutinase HD PF01966.22 CQR52036.1 - 1.9e-19 70.1 0.1 3.6e-19 69.2 0.1 1.5 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR52036.1 - 2.2e-16 59.9 0.3 5.3e-16 58.6 0.3 1.7 1 0 0 1 1 1 1 HD domain HAMP PF00672.25 CQR52036.1 - 2.1e-06 28.0 0.0 4.6e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HD_3 PF13023.6 CQR52036.1 - 0.038 13.9 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 HD domain HDOD PF08668.12 CQR52036.1 - 0.053 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 HDOD domain SHOCT PF09851.9 CQR52036.1 - 0.13 12.0 0.5 0.33 10.8 0.5 1.7 1 0 0 1 1 1 0 Short C-terminal domain Epiglycanin_C PF14654.6 CQR52038.1 - 0.062 13.4 0.0 0.066 13.3 0.0 1.1 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region NusG_II PF07009.11 CQR52040.1 - 5.3e-30 103.8 0.1 6.9e-30 103.4 0.1 1.1 1 0 0 1 1 1 1 NusG domain II Hpre_diP_synt_I PF07456.11 CQR52042.1 - 1e-42 145.7 20.3 1.2e-42 145.4 20.3 1.1 1 0 0 1 1 1 1 Heptaprenyl diphosphate synthase component I DUF5305 PF17231.2 CQR52042.1 - 1.2 8.4 3.1 0.52 9.7 0.3 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5305) ABC_tran PF00005.27 CQR52044.1 - 2.8e-31 108.9 0.0 3.8e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR52044.1 - 4.4e-10 39.4 0.6 2.7e-08 33.5 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 CQR52044.1 - 5.6e-08 33.3 0.1 0.0029 18.0 0.0 2.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 CQR52044.1 - 9.9e-06 25.6 0.1 0.018 14.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 CQR52044.1 - 0.00024 21.3 0.3 0.015 15.5 0.5 2.8 3 1 0 3 3 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 CQR52044.1 - 0.00036 21.0 0.1 0.001 19.5 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR52044.1 - 0.00079 19.7 0.2 0.0053 17.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR52044.1 - 0.0011 18.7 0.1 0.11 12.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR52044.1 - 0.0016 18.2 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 CQR52044.1 - 0.0032 17.5 0.0 0.011 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 CQR52044.1 - 0.0041 16.9 0.0 0.0053 16.5 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 CQR52044.1 - 0.0064 16.9 0.0 0.074 13.4 0.0 2.1 2 0 0 2 2 2 1 RNA helicase AAA_23 PF13476.6 CQR52044.1 - 0.0097 16.4 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR52044.1 - 0.013 15.1 0.0 0.43 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR52044.1 - 0.019 15.1 0.1 0.86 9.8 0.1 2.6 3 0 0 3 3 3 0 AAA domain TniB PF05621.11 CQR52044.1 - 0.021 14.2 0.1 0.84 9.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Mg_chelatase PF01078.21 CQR52044.1 - 0.034 13.5 0.1 0.081 12.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 CQR52044.1 - 0.043 13.0 0.0 0.076 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Rad17 PF03215.15 CQR52044.1 - 0.051 13.5 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 CQR52044.1 - 0.055 13.7 0.2 0.63 10.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 CQR52044.1 - 0.082 12.9 0.0 0.63 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 CQR52044.1 - 0.1 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 CQR52044.1 - 0.2 11.5 0.7 0.48 10.3 0.1 1.8 2 0 0 2 2 2 0 NTPase ATP_bind_1 PF03029.17 CQR52044.1 - 0.21 11.3 0.1 0.31 10.8 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 CQR52044.1 - 0.22 11.4 0.0 0.36 10.7 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_10 PF12846.7 CQR52044.1 - 0.22 10.4 0.1 13 4.5 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain DEAD PF00270.29 CQR52044.1 - 0.22 11.2 0.0 1.1 9.0 0.0 1.9 2 0 0 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.27 CQR52045.1 - 4.9e-26 91.9 0.0 6.7e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52045.1 - 4.4e-12 46.4 2.1 2.1e-07 31.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 CQR52045.1 - 4.6e-06 26.3 0.1 0.048 13.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 CQR52045.1 - 0.0001 21.8 0.2 0.0083 15.6 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 CQR52045.1 - 0.00089 18.2 0.5 0.12 11.2 0.8 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 CQR52045.1 - 0.0011 18.7 0.4 0.002 17.8 0.4 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR52045.1 - 0.0066 17.0 0.7 0.011 16.3 0.7 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR52045.1 - 0.009 16.4 0.1 0.018 15.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR52045.1 - 0.011 16.1 0.2 0.7 10.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 CQR52045.1 - 0.023 14.1 1.9 0.042 13.2 0.4 2.0 2 1 1 3 3 3 0 KaiC AAA_15 PF13175.6 CQR52045.1 - 0.025 14.3 0.0 5.1 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR52045.1 - 0.03 14.2 0.1 0.05 13.5 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 CQR52045.1 - 0.038 13.3 0.2 0.094 12.0 0.2 1.6 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.18 CQR52045.1 - 0.042 13.6 0.0 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family FtsK_SpoIIIE PF01580.18 CQR52045.1 - 0.091 12.1 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.17 CQR52045.1 - 0.095 12.8 0.4 0.2 11.7 0.4 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain T2SSE PF00437.20 CQR52045.1 - 0.11 11.5 0.5 0.18 10.9 0.1 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.6 CQR52045.1 - 0.12 12.0 0.2 0.28 10.9 0.2 1.5 1 0 0 1 1 1 0 AAA domain KdpD PF02702.17 CQR52045.1 - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain MeaB PF03308.16 CQR52045.1 - 0.15 11.0 0.1 0.24 10.3 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 CQR52045.1 - 0.16 12.2 0.0 0.62 10.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CbiQ PF02361.16 CQR52048.1 - 3.8e-41 141.1 8.3 5.3e-41 140.6 8.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein Peptidase_U32 PF01136.19 CQR52049.1 - 5.2e-88 294.1 0.0 5.6e-65 218.8 0.0 2.4 2 0 0 2 2 2 2 Peptidase family U32 Peripla_BP_3 PF13377.6 CQR52049.1 - 0.053 13.9 0.0 0.33 11.3 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein-like domain Aminotran_3 PF00202.21 CQR52051.1 - 8.3e-106 354.0 0.0 1e-105 353.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Helicase_RecD PF05127.14 CQR52051.1 - 0.1 12.5 0.0 0.41 10.5 0.0 1.9 1 1 0 1 1 1 0 Helicase UbiA PF01040.18 CQR52053.1 - 3.7e-48 164.0 18.5 4.5e-48 163.7 18.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Bac_export_2 PF01312.19 CQR52053.1 - 0.47 9.6 10.0 0.82 8.8 10.0 1.5 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family polyprenyl_synt PF00348.17 CQR52056.1 - 1.7e-63 214.1 0.0 2.1e-63 213.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Pyr_redox_2 PF07992.14 CQR52059.1 - 3.3e-42 144.7 0.9 4.2e-42 144.4 0.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR52059.1 - 2.9e-10 40.6 2.4 3.1e-07 30.8 0.2 3.0 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase DoxX PF07681.12 CQR52059.1 - 8.8e-07 29.4 9.5 3.2e-06 27.6 5.3 3.4 1 1 1 2 2 2 1 DoxX NAD_binding_9 PF13454.6 CQR52059.1 - 8.5e-06 25.8 0.0 0.019 14.9 0.0 3.4 3 0 0 3 3 3 1 FAD-NAD(P)-binding DoxD PF04173.13 CQR52059.1 - 0.00017 21.5 3.1 0.00017 21.5 3.1 3.0 3 0 0 3 3 3 1 TQO small subunit DoxD DAO PF01266.24 CQR52059.1 - 0.00096 18.8 4.1 0.84 9.2 0.0 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 CQR52059.1 - 0.001 18.4 0.6 0.33 10.2 0.3 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase PRMT5 PF05185.16 CQR52059.1 - 0.0054 16.6 0.1 0.018 14.9 0.1 1.8 2 0 0 2 2 2 1 PRMT5 arginine-N-methyltransferase Sacchrp_dh_NADP PF03435.18 CQR52059.1 - 0.016 15.4 0.0 3.6 7.8 0.0 2.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_8 PF13450.6 CQR52059.1 - 0.021 15.1 0.3 0.15 12.3 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 CQR52059.1 - 0.034 13.0 0.0 0.059 12.2 0.0 1.4 1 0 0 1 1 1 0 Tryptophan halogenase Phage_holin_2_4 PF16082.5 CQR52059.1 - 1.5 8.6 4.2 6 6.7 4.2 2.1 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like FMN_bind PF04205.14 CQR52060.1 - 1.5e-05 25.5 5.3 0.032 14.8 0.7 2.4 2 0 0 2 2 2 2 FMN-binding domain DUF4969 PF16339.5 CQR52060.1 - 0.041 14.2 0.0 0.27 11.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4969) CsbD PF05532.12 CQR52062.1 - 6.4e-18 64.4 6.5 7.3e-18 64.2 6.5 1.1 1 0 0 1 1 1 1 CsbD-like HATPase_c PF02518.26 CQR52066.1 - 1.5e-26 93.1 0.0 5.2e-26 91.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52066.1 - 1.4e-18 66.6 0.5 6.7e-18 64.5 0.2 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain MFS_1 PF07690.16 CQR52069.1 - 4.6e-26 91.6 43.2 2.2e-18 66.3 18.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR52069.1 - 3.5e-06 26.1 29.6 0.00047 19.1 9.3 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 CQR52069.1 - 0.18 10.1 11.4 0.012 14.0 2.5 2.5 1 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Gram_pos_anchor PF00746.21 CQR52069.1 - 0.49 10.4 5.8 16 5.6 1.8 3.0 2 0 0 2 2 2 0 LPXTG cell wall anchor motif NAD_binding_10 PF13460.6 CQR52071.1 - 8.8e-16 58.3 0.2 2.5e-15 56.9 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H-binding Epimerase PF01370.21 CQR52071.1 - 1.5e-08 34.4 0.0 2.9e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 CQR52071.1 - 8.4e-06 25.5 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family HIM1 PF08732.10 CQR52071.1 - 0.00084 18.9 0.0 0.001 18.6 0.0 1.1 1 0 0 1 1 1 1 HIM1 Semialdhyde_dh PF01118.24 CQR52071.1 - 0.0023 18.4 0.0 0.0051 17.2 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_4 PF07993.12 CQR52071.1 - 0.0032 16.7 0.2 0.1 11.8 0.1 2.5 2 1 1 3 3 3 1 Male sterility protein 3Beta_HSD PF01073.19 CQR52071.1 - 0.049 12.6 0.0 0.1 11.6 0.0 1.5 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Ribonuc_L-PSP PF01042.21 CQR52073.1 - 8.5e-46 154.9 0.1 1e-45 154.6 0.1 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP Glyco_hydro_31 PF01055.26 CQR52076.1 - 2.3e-155 518.1 0.7 2.8e-155 517.8 0.7 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 CQR52076.1 - 3.2e-22 78.6 0.1 1.5e-21 76.5 0.1 2.3 2 0 0 2 2 2 1 Galactose mutarotase-like DUF5110 PF17137.4 CQR52076.1 - 2.4e-10 40.5 0.1 1e-09 38.5 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5110) DUF4968 PF16338.5 CQR52076.1 - 3.6e-05 24.0 0.0 6.7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4968) Phage_T4_Ndd PF06591.11 CQR52076.1 - 0.0056 16.5 0.0 0.77 9.5 0.0 2.3 1 1 1 2 2 2 2 T4-like phage nuclear disruption protein (Ndd) SNF2_N PF00176.23 CQR52078.1 - 4.6e-57 193.3 0.0 1.6e-56 191.6 0.0 1.8 2 0 0 2 2 2 1 SNF2 family N-terminal domain DUF3670 PF12419.8 CQR52078.1 - 6.8e-38 129.6 0.1 2.1e-37 128.1 0.1 1.9 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.31 CQR52078.1 - 5e-14 52.6 0.0 1e-13 51.6 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 CQR52078.1 - 0.0012 18.7 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase RelA_SpoT PF04607.17 CQR52084.1 - 1.2e-34 119.0 0.3 2.5e-34 118.1 0.3 1.5 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins CENP-F_leu_zip PF10473.9 CQR52084.1 - 0.006 16.6 1.8 0.006 16.6 1.8 2.6 2 1 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PVL_ORF50 PF07768.11 CQR52084.1 - 0.011 16.1 1.3 0.018 15.3 0.0 2.1 2 1 0 2 2 2 0 PVL ORF-50-like family DUF4368 PF14287.6 CQR52084.1 - 0.089 13.1 0.1 0.36 11.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) zinc_ribbon_2 PF13240.6 CQR52088.1 - 8e-08 31.8 4.8 0.00037 20.1 0.4 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 CQR52088.1 - 7.4e-07 29.8 3.2 0.019 15.7 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon family DZR PF12773.7 CQR52088.1 - 1.2e-06 28.5 5.8 0.0013 18.7 0.5 2.3 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 CQR52088.1 - 1.2e-05 24.5 8.0 4.3e-05 22.8 0.6 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 CQR52088.1 - 0.0033 17.1 2.1 1.5 8.5 0.0 3.2 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain Cript PF10235.9 CQR52088.1 - 0.0044 17.5 1.1 2 9.0 0.0 2.4 2 0 0 2 2 2 2 Microtubule-associated protein CRIPT NOB1_Zn_bind PF08772.11 CQR52088.1 - 0.0096 16.1 3.2 1.8 8.7 0.2 2.5 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 CQR52088.1 - 0.0099 15.7 5.5 0.15 12.0 1.5 2.4 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbons_6 PF07191.12 CQR52088.1 - 0.013 15.4 6.1 1.1 9.3 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbons HypA PF01155.19 CQR52088.1 - 0.021 14.9 6.8 1.3 9.1 0.4 2.5 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 CQR52088.1 - 0.033 14.8 1.4 8.7 7.1 0.1 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.9 CQR52088.1 - 0.037 14.1 4.3 0.037 14.1 4.3 2.9 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 zinc-ribbon_6 PF10005.9 CQR52088.1 - 0.09 13.5 2.5 0.39 11.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 CQR52088.1 - 0.14 12.1 0.1 0.14 12.1 0.1 3.4 3 0 0 3 3 3 0 Nudix N-terminal zf-FPG_IleRS PF06827.14 CQR52088.1 - 0.54 10.2 9.1 5.9 6.9 0.0 3.1 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.12 CQR52088.1 - 0.63 9.6 5.5 7.7 6.1 0.2 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding DivIC PF04977.15 CQR52088.1 - 0.81 9.5 6.8 7.5 6.4 0.1 3.0 3 0 0 3 3 3 0 Septum formation initiator Prok-RING_1 PF14446.6 CQR52088.1 - 1.3 9.0 6.3 1.4 8.9 0.8 2.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DNA_ligase_ZBD PF03119.16 CQR52088.1 - 1.5 8.9 5.7 13 5.9 0.2 3.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.14 CQR52088.1 - 1.7 9.0 5.5 0.69 10.3 0.1 2.9 3 2 0 3 3 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.7 CQR52088.1 - 1.8 8.6 6.7 9.9 6.2 0.1 2.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 CQR52088.1 - 7.6 6.8 10.4 8.8 6.5 1.0 3.3 2 2 0 2 2 2 0 Zinc ribbon domain TrmB PF01978.19 CQR52090.1 - 7.3e-17 61.0 0.2 2.9e-16 59.1 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 CQR52090.1 - 6.6e-06 25.8 0.1 3.9e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 CQR52090.1 - 1.1e-05 25.3 0.3 6.4e-05 22.8 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.6 CQR52090.1 - 1.8e-05 24.6 0.0 4.2e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 CQR52090.1 - 2.3e-05 24.3 0.0 4.7e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR52090.1 - 3.7e-05 23.2 0.0 7.2e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 CQR52090.1 - 0.0003 20.4 0.0 0.00063 19.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 CQR52090.1 - 0.0011 19.3 0.1 0.0022 18.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 CQR52090.1 - 0.0011 19.1 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 CQR52090.1 - 0.0013 18.6 0.0 0.0026 17.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 CQR52090.1 - 0.0018 18.6 0.0 0.0037 17.6 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.6 CQR52090.1 - 0.0033 17.6 0.0 0.0054 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 CQR52090.1 - 0.0038 17.0 0.0 0.01 15.7 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 CQR52090.1 - 0.0061 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 CQR52090.1 - 0.015 15.3 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 CQR52090.1 - 0.026 14.5 0.2 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family z-alpha PF02295.17 CQR52090.1 - 0.033 14.2 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_28 PF13518.6 CQR52090.1 - 0.035 14.2 0.1 0.089 12.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 CQR52090.1 - 0.045 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR52090.1 - 0.052 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 CQR52090.1 - 0.065 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.6 CQR52090.1 - 0.071 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 CQR52090.1 - 0.072 13.2 0.0 0.22 11.6 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Tox-GHH PF15636.6 CQR52090.1 - 0.077 13.0 2.3 2.1 8.4 0.8 2.6 2 1 0 2 2 2 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin HTH_7 PF02796.15 CQR52090.1 - 0.11 12.6 0.1 0.39 10.8 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Pribosyltran PF00156.27 CQR52094.1 - 1.8e-08 34.0 0.1 3.1e-08 33.3 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain MctB PF11382.8 CQR52094.1 - 0.12 12.0 0.2 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB DAGK_cat PF00781.24 CQR52096.1 - 9.7e-27 93.1 0.0 2e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 CQR52096.1 - 0.0026 17.0 0.1 0.0038 16.5 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_acc PF00609.19 CQR52096.1 - 0.0028 18.0 0.0 0.0055 17.1 0.0 1.5 1 1 0 1 1 1 1 Diacylglycerol kinase accessory domain Acetyltransf_6 PF13480.7 CQR52096.1 - 0.19 11.9 1.5 0.34 11.1 1.5 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4870 PF09685.10 CQR52098.1 - 0.00053 20.1 2.7 0.00071 19.7 2.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) COX2 PF00116.20 CQR52102.1 - 8.7e-22 77.3 0.6 2.5e-17 62.9 0.0 2.2 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 CQR52102.1 - 2.4e-10 40.4 0.5 3.9e-10 39.7 0.5 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cytochrom_C PF00034.21 CQR52102.1 - 5.5e-06 27.4 0.0 2.2e-05 25.5 0.0 2.0 2 1 0 2 2 2 1 Cytochrome c Cytochrome_CBB3 PF13442.6 CQR52102.1 - 5.6e-06 26.6 0.0 1.7e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III FeoB_associated PF12669.7 CQR52102.1 - 0.011 16.1 0.3 0.011 16.1 0.3 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF898 PF05987.13 CQR52102.1 - 0.053 12.6 0.4 0.076 12.0 0.4 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF3377 PF11857.8 CQR52102.1 - 0.061 13.3 1.0 3.6 7.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) LMBR1 PF04791.16 CQR52102.1 - 0.072 12.0 1.0 0.092 11.6 1.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Cupredoxin_1 PF13473.6 CQR52102.1 - 0.16 12.1 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain COX1 PF00115.20 CQR52105.1 - 4.5e-154 513.5 70.2 4.5e-154 513.5 70.2 2.0 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 CQR52107.1 - 8.4e-15 55.3 21.0 1.8e-14 54.2 21.1 1.5 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III COX4_pro PF03626.14 CQR52109.1 - 3e-13 50.0 15.7 4e-13 49.6 15.7 1.2 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF4133 PF13571.6 CQR52109.1 - 0.073 13.4 0.8 0.073 13.4 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4133) O-antigen_lig PF13425.6 CQR52109.1 - 0.24 10.1 4.4 0.29 9.9 4.4 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Caa3_CtaG PF09678.10 CQR52113.1 - 6.9e-61 205.7 22.0 8.7e-61 205.3 22.0 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF420 PF04238.12 CQR52115.1 - 1.7e-38 131.9 13.8 2e-38 131.7 13.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 CQR52115.1 - 3e-08 34.0 8.2 6e-06 26.5 2.0 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2306) DUF3112 PF11309.8 CQR52115.1 - 0.0013 18.2 2.3 0.0013 18.2 2.3 2.2 1 1 2 3 3 3 1 Protein of unknown function (DUF3112) DUF3488 PF11992.8 CQR52115.1 - 0.011 14.7 0.6 0.011 14.7 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3488) Peptidase_U4 PF03419.13 CQR52115.1 - 0.28 10.4 9.9 0.42 9.8 9.9 1.4 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4149 PF13664.6 CQR52115.1 - 0.33 11.3 10.3 2 8.8 3.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) DUF4131 PF13567.6 CQR52115.1 - 1.4 8.5 7.6 1.1 8.9 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) 7TM_GPCR_Srd PF10317.9 CQR52115.1 - 3 7.0 11.1 0.51 9.5 2.4 2.0 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srd DHHC PF01529.20 CQR52115.1 - 3.5 7.7 12.2 1.6 8.8 2.8 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase Tetraspanin PF00335.20 CQR52115.1 - 4 7.1 12.8 0.24 11.1 7.1 1.7 1 1 0 1 1 1 0 Tetraspanin family TctB PF07331.11 CQR52115.1 - 4.8 7.5 16.2 31 4.9 16.2 2.0 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3397 PF11877.8 CQR52115.1 - 7.3 6.8 18.0 3.8e+03 -1.9 17.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) Lactamase_B PF00753.27 CQR52117.1 - 2.9e-15 56.8 10.0 5.6e-15 55.9 9.9 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR52117.1 - 0.096 12.2 1.4 0.11 12.1 1.4 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain GntR PF00392.21 CQR52122.1 - 1.3e-16 60.0 0.1 5.4e-16 58.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 CQR52122.1 - 0.013 15.4 0.0 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 CQR52122.1 - 0.043 14.2 0.0 0.068 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 CQR52122.1 - 0.044 13.5 0.0 0.077 12.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Ribosomal_S19e PF01090.19 CQR52122.1 - 0.049 13.3 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_Crp_2 PF13545.6 CQR52122.1 - 0.15 12.1 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ABC_tran PF00005.27 CQR52124.1 - 3.4e-25 89.2 0.0 5.2e-25 88.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52124.1 - 6.9e-15 55.6 0.0 1.6e-09 38.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR52124.1 - 1.1e-05 25.4 0.0 0.0053 16.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 CQR52124.1 - 4.9e-05 23.6 0.0 0.0018 18.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR52124.1 - 0.00015 21.4 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR52124.1 - 0.0004 19.9 0.0 0.031 13.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR52124.1 - 0.0014 18.6 0.2 0.011 15.7 0.0 2.3 2 1 1 3 3 3 1 RsgA GTPase AAA_25 PF13481.6 CQR52124.1 - 0.0014 18.2 0.0 0.0071 15.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR52124.1 - 0.0019 18.6 0.0 0.0046 17.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR52124.1 - 0.0022 18.6 0.0 0.0041 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 CQR52124.1 - 0.038 14.1 0.0 0.89 9.6 0.0 2.4 2 0 0 2 2 2 0 Dynamin family MMR_HSR1 PF01926.23 CQR52124.1 - 0.068 13.3 0.0 5.8 7.0 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 CQR52124.1 - 0.08 11.7 0.8 0.55 9.0 0.0 2.2 2 1 1 3 3 3 0 Predicted ATPase of the ABC class MukB PF04310.12 CQR52124.1 - 0.087 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal Zeta_toxin PF06414.12 CQR52124.1 - 0.15 11.3 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 CQR52126.1 - 3.2e-27 95.7 0.0 6.7e-27 94.7 0.0 1.5 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.6 CQR52126.1 - 3e-17 63.1 0.1 1.2e-16 61.2 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 CQR52126.1 - 7.4e-08 32.5 0.1 0.0014 18.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR52126.1 - 0.00026 20.5 0.1 0.014 14.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 CQR52126.1 - 0.00091 19.4 0.0 0.011 16.0 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 CQR52126.1 - 0.024 14.9 0.8 0.54 10.5 0.8 2.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR52126.1 - 0.028 14.2 0.1 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MukB PF04310.12 CQR52126.1 - 0.031 14.1 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 CQR52126.1 - 0.1 12.3 0.2 0.35 10.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 CQR52126.1 - 0.15 9.5 0.2 0.25 8.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane_3 PF12698.7 CQR52128.1 - 3.1e-56 190.9 16.5 3.7e-56 190.7 16.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein CBM_21 PF03370.13 CQR52133.1 - 5.9e-32 110.2 12.2 4.6e-18 65.4 3.5 2.1 2 0 0 2 2 2 2 Carbohydrate/starch-binding module (family 21) CBM53 PF16760.5 CQR52133.1 - 4.5e-14 52.8 19.4 1.5e-09 38.3 6.2 2.4 2 1 0 2 2 2 2 Starch/carbohydrate-binding module (family 53) CHB_HEX_C_1 PF13290.6 CQR52133.1 - 0.0096 15.9 4.9 0.24 11.4 0.8 2.7 2 0 0 2 2 2 2 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 CQR52133.1 - 0.014 15.6 7.4 0.2 11.8 0.3 3.0 2 1 0 2 2 2 0 Fn3 associated DUF1344 PF07076.11 CQR52133.1 - 0.11 12.5 0.3 27 4.8 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) HTH_16 PF12645.7 CQR52135.1 - 0.029 14.4 0.0 0.037 14.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR52136.1 - 6.4e-07 29.0 0.0 1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR52136.1 - 3.1e-05 23.4 0.0 4.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR52136.1 - 0.0013 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 CQR52136.1 - 0.0021 17.9 0.4 0.0055 16.6 0.0 1.7 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 CQR52136.1 - 0.0049 16.9 0.1 0.009 16.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix KORA PF16509.5 CQR52136.1 - 0.0054 17.0 0.2 0.0081 16.4 0.2 1.2 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_28 PF13518.6 CQR52136.1 - 0.0062 16.6 0.1 0.015 15.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 CQR52136.1 - 0.027 14.4 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF1323 PF07037.11 CQR52136.1 - 0.043 14.2 0.1 0.076 13.4 0.1 1.4 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) CENP-B_N PF04218.13 CQR52136.1 - 0.045 13.4 0.2 0.069 12.8 0.2 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain P22_Cro PF14549.6 CQR52136.1 - 0.069 13.0 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro GerE PF00196.19 CQR52136.1 - 0.083 12.5 0.2 0.14 11.7 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.20 CQR52136.1 - 0.087 13.1 0.1 0.21 11.9 0.0 1.7 2 0 0 2 2 2 0 Transposase Wzy_C PF04932.15 CQR52140.1 - 2.6e-20 72.6 13.4 2.6e-20 72.6 13.4 5.4 3 2 1 4 4 4 2 O-Antigen ligase Wzy_C_2 PF11846.8 CQR52140.1 - 0.00074 19.5 1.7 0.00074 19.5 1.7 5.1 5 3 0 6 6 6 1 Virulence factor membrane-bound polymerase, C-terminal NatB_MDM20 PF09797.9 CQR52140.1 - 0.0009 18.3 0.6 0.0016 17.4 0.6 1.3 1 0 0 1 1 1 1 N-acetyltransferase B complex (NatB) non catalytic subunit Glutaredoxin PF00462.24 CQR52146.1 - 1.2e-13 51.0 0.1 1.4e-13 50.8 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 CQR52146.1 - 9.1e-05 22.8 0.0 9.6e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DUF2007 PF09413.10 CQR52146.1 - 0.00063 19.9 0.0 0.00092 19.3 0.0 1.4 1 1 0 1 1 1 1 Putative prokaryotic signal transducing protein Thioredoxin_3 PF13192.6 CQR52146.1 - 0.00069 19.6 0.2 0.00099 19.1 0.2 1.2 1 0 0 1 1 1 1 Thioredoxin domain YscJ_FliF PF01514.17 CQR52146.1 - 0.076 12.7 0.0 0.076 12.7 0.0 1.1 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family DUF2847 PF11009.8 CQR52148.1 - 3.4e-34 116.8 0.1 3.8e-34 116.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2847) Cpta_toxin PF07254.12 CQR52148.1 - 0.097 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Membrane-bound toxin component of toxin-antitoxin system adh_short PF00106.25 CQR52150.1 - 9.1e-31 106.8 0.1 1.1e-30 106.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR52150.1 - 3e-19 69.5 0.0 3.6e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR52150.1 - 4.4e-06 26.7 0.3 6.4e-06 26.2 0.3 1.2 1 0 0 1 1 1 1 KR domain ThuA PF06283.11 CQR52152.1 - 1.7e-35 123.2 0.0 2e-35 123.0 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation DUF2194 PF09960.9 CQR52152.1 - 0.047 12.0 0.0 0.15 10.4 0.0 1.5 1 1 1 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2194) MerR_1 PF13411.6 CQR52155.1 - 3.7e-17 62.2 1.3 3.8e-17 62.1 0.1 1.6 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 CQR52155.1 - 3.7e-17 61.8 2.7 3.7e-17 61.8 2.7 1.7 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR52155.1 - 2.1e-07 31.4 0.2 5e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 MerR, DNA binding DivIVA PF05103.13 CQR52155.1 - 0.0012 18.9 0.5 0.0017 18.5 0.5 1.2 1 0 0 1 1 1 1 DivIVA protein HTH_23 PF13384.6 CQR52155.1 - 0.02 14.7 0.0 0.83 9.5 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_17 PF12728.7 CQR52155.1 - 0.023 14.9 0.4 0.11 12.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR52155.1 - 0.044 13.5 0.6 14 5.4 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_31 PF13560.6 CQR52155.1 - 0.071 13.5 0.0 0.77 10.2 0.2 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain Thioredoxin PF00085.20 CQR52156.1 - 1.4e-21 76.4 0.0 1.6e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 CQR52156.1 - 1.5e-07 31.6 0.0 1.2e-05 25.6 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.6 CQR52156.1 - 1.8e-06 28.3 0.0 7e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.21 CQR52156.1 - 6e-06 26.2 0.0 6.6e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR52156.1 - 3.5e-05 23.5 0.0 3.9e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_5 PF13743.6 CQR52156.1 - 0.00039 20.2 0.1 0.4 10.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_3 PF13192.6 CQR52156.1 - 0.00039 20.4 0.0 0.00049 20.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 CQR52156.1 - 0.00077 19.2 0.0 0.00092 19.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 CQR52156.1 - 0.0013 18.6 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Glutaredoxin PF00462.24 CQR52156.1 - 0.0016 18.6 0.0 0.0024 18.1 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_7 PF13899.6 CQR52156.1 - 0.0046 17.1 0.0 0.008 16.3 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like DSBA PF01323.20 CQR52156.1 - 0.1 12.4 0.2 2 8.1 0.2 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF953 PF06110.11 CQR52156.1 - 0.12 11.9 0.1 0.32 10.6 0.1 1.7 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Cylicin_N PF15241.6 CQR52158.1 - 0.29 11.3 5.7 9.9 6.3 0.2 3.0 1 1 2 3 3 3 0 Cylicin N-terminus CHAD PF05235.14 CQR52160.1 - 8.6e-32 110.9 9.2 1.1e-31 110.6 9.2 1.1 1 0 0 1 1 1 1 CHAD domain Nnf1 PF03980.14 CQR52160.1 - 0.14 12.6 7.8 4.7 7.6 0.0 3.3 1 1 2 3 3 3 0 Nnf1 BPL_LplA_LipB PF03099.19 CQR52162.1 - 7.9e-07 29.0 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family CN_hydrolase PF00795.22 CQR52164.1 - 2.3e-49 168.1 0.0 2.6e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase MarR PF01047.22 CQR52167.1 - 1.1e-13 50.9 0.1 2.1e-13 49.9 0.1 1.5 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR52167.1 - 2e-08 34.0 0.1 4.1e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.6 CQR52167.1 - 4.3e-08 33.2 0.1 6.7e-08 32.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 CQR52167.1 - 2.7e-05 24.6 0.0 6.5e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 CQR52167.1 - 4.5e-05 23.2 0.1 9.2e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 CQR52167.1 - 0.0002 20.8 0.0 0.00037 20.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 CQR52167.1 - 0.0011 19.0 0.2 0.0029 17.6 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 CQR52167.1 - 0.0011 18.6 0.1 0.0053 16.4 0.1 2.1 1 1 0 1 1 1 1 Replication protein C N-terminal domain B-block_TFIIIC PF04182.12 CQR52167.1 - 0.0014 18.7 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_12 PF08461.10 CQR52167.1 - 0.0099 15.8 0.0 0.026 14.5 0.0 1.8 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HxlR PF01638.17 CQR52167.1 - 0.04 13.8 0.1 0.073 12.9 0.1 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF2513 PF10711.9 CQR52167.1 - 0.051 13.9 0.0 0.082 13.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) TrmB PF01978.19 CQR52167.1 - 0.066 13.1 0.0 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 CQR52167.1 - 0.074 13.0 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family FUR PF01475.19 CQR52167.1 - 0.093 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Nitroreductase PF00881.24 CQR52168.1 - 2.6e-32 112.2 0.1 3.5e-32 111.8 0.1 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR52168.1 - 3e-09 36.8 0.9 8.2e-05 22.3 0.1 3.2 2 1 1 3 3 3 2 Putative TM nitroreductase ABM PF03992.16 CQR52171.1 - 4.2e-16 58.8 0.4 5.1e-16 58.6 0.4 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF4188 PF13826.6 CQR52171.1 - 0.025 14.9 0.1 0.025 14.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4188) DUF3326 PF11805.8 CQR52171.1 - 0.025 13.4 0.1 0.025 13.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) Aminotran_1_2 PF00155.21 CQR52173.1 - 1.6e-64 218.4 0.0 1.8e-64 218.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II ALF PF03752.13 CQR52173.1 - 0.067 13.2 0.6 0.22 11.5 0.6 1.9 1 0 0 1 1 1 0 Short repeats of unknown function PLDc_2 PF13091.6 CQR52176.1 - 1.1e-19 70.6 0.0 1.4e-12 47.6 0.0 2.6 2 1 0 2 2 2 2 PLD-like domain PLDc PF00614.22 CQR52176.1 - 0.00034 20.6 0.3 0.00085 19.4 0.3 1.7 1 0 0 1 1 1 1 Phospholipase D Active site motif PP_kinase_C PF13090.6 CQR52176.1 - 0.016 14.7 0.0 0.59 9.6 0.0 2.2 2 0 0 2 2 2 0 Polyphosphate kinase C-terminal domain 2 PHA_gran_rgn PF09650.10 CQR52176.1 - 0.12 12.7 0.0 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) HTH_5 PF01022.20 CQR52181.1 - 3.5e-10 39.6 0.2 5.6e-10 38.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR52181.1 - 8.7e-10 38.5 0.1 1.7e-09 37.6 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 CQR52181.1 - 0.0025 17.7 0.1 0.004 17.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 CQR52181.1 - 0.0029 17.5 0.2 0.0043 16.9 0.2 1.2 1 0 0 1 1 1 1 MarR family Sulfate_transp PF00916.20 CQR52183.1 - 9.9e-95 317.5 27.1 1.3e-94 317.1 27.1 1.1 1 0 0 1 1 1 1 Sulfate permease family STAS PF01740.21 CQR52183.1 - 3.8e-14 52.3 0.0 6.7e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 CQR52183.1 - 0.011 16.1 8.1 0.011 16.1 8.1 4.5 3 2 1 4 4 4 0 Molybdate transporter of MFS superfamily STAS_2 PF13466.6 CQR52183.1 - 0.048 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 STAS domain DUF1361 PF07099.11 CQR52185.1 - 1.6e-42 145.3 13.6 2.4e-42 144.7 13.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1361) DUF3989 PF13150.6 CQR52185.1 - 0.31 10.8 1.8 11 5.9 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) DNA_binding_1 PF01035.20 CQR52187.1 - 1.1e-20 73.5 0.0 1.3e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain GerA PF03323.13 CQR52189.1 - 6.8e-163 542.5 0.3 7.7e-163 542.3 0.3 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Spore_GerAC PF05504.11 CQR52191.1 - 3.6e-33 115.1 0.2 5.3e-33 114.5 0.2 1.3 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal ABC_transp_aux PF09822.9 CQR52191.1 - 0.13 11.7 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF4131 PF13567.6 CQR52193.1 - 0.16 11.6 0.4 0.17 11.6 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Spore_permease PF03845.13 CQR52195.1 - 2.2e-43 148.3 27.8 2.8e-43 148.0 27.8 1.1 1 0 0 1 1 1 1 Spore germination protein Tom22 PF04281.13 CQR52195.1 - 0.93 9.3 2.9 0.41 10.4 0.3 1.7 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom22 ETF PF01012.21 CQR52197.1 - 0.13 12.1 0.0 0.68 9.8 0.0 2.0 2 1 1 3 3 3 0 Electron transfer flavoprotein domain ABM PF03992.16 CQR52200.1 - 1.3e-10 41.2 0.0 1.6e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase APH PF01636.23 CQR52201.1 - 8.8e-19 68.4 0.0 1.6e-18 67.5 0.0 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 CQR52201.1 - 0.00016 21.1 0.7 0.00033 20.1 0.7 1.6 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase RIO1 PF01163.22 CQR52201.1 - 0.02 14.5 0.0 0.98 9.0 0.0 2.1 2 0 0 2 2 2 0 RIO1 family DUF1697 PF08002.11 CQR52203.1 - 6.6e-49 165.9 0.1 8e-49 165.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1697) RP-C PF03428.13 CQR52203.1 - 0.061 13.0 0.1 0.52 10.0 0.0 2.0 1 1 1 2 2 2 0 Replication protein C N-terminal domain PMT_2 PF13231.6 CQR52205.1 - 5.5e-33 114.4 16.9 5.5e-33 114.4 16.9 3.6 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GT87 PF09594.10 CQR52205.1 - 0.0036 17.1 16.8 0.0036 17.1 16.8 3.3 2 1 1 3 3 3 2 Glycosyltransferase family 87 DUF1029 PF06269.12 CQR52205.1 - 0.09 12.9 2.5 38 4.5 0.1 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1029) Glycos_transf_2 PF00535.26 CQR52207.1 - 2.6e-35 121.7 0.1 3.5e-35 121.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR52207.1 - 9.3e-08 31.9 0.0 1.3e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 CQR52207.1 - 9e-07 29.0 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR52207.1 - 0.0046 17.4 0.1 0.18 12.3 0.1 2.2 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 CQR52207.1 - 0.14 11.6 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 Phage_holin_3_6 PF07332.11 CQR52207.1 - 1.4 9.0 3.9 2.5 8.1 3.9 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III NTP_transferase PF00483.23 CQR52210.1 - 2.8e-32 112.3 0.0 3.8e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR52210.1 - 7.5e-10 39.4 0.0 1.1e-09 38.8 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 CQR52210.1 - 0.0014 18.5 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 CQR52210.1 - 0.021 14.6 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 CQR52210.1 - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase DDE_Tnp_1 PF01609.21 CQR52212.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR52212.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR52212.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR52212.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain Pyr_redox_2 PF07992.14 CQR52214.1 - 2.2e-14 53.4 6.5 6.4e-12 45.3 2.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 CQR52214.1 - 3.7e-09 36.2 12.4 2.1e-05 23.8 1.0 3.0 1 1 2 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 CQR52214.1 - 4.4e-09 36.2 3.4 4.3e-06 26.4 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 CQR52214.1 - 2.1e-08 34.1 4.6 0.00055 19.6 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 CQR52214.1 - 3e-08 33.3 1.3 0.004 16.4 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR52214.1 - 2.6e-07 29.7 3.2 1.2e-05 24.3 0.3 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.6 CQR52214.1 - 1.4e-06 28.3 0.4 0.0013 18.8 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 CQR52214.1 - 4.1e-06 26.3 0.7 3e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 CQR52214.1 - 5.1e-06 25.8 10.1 1.6e-05 24.2 0.5 2.9 1 1 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 CQR52214.1 - 8.7e-05 22.7 0.1 0.00016 21.8 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 CQR52214.1 - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 CQR52214.1 - 0.01 15.7 0.3 0.016 15.1 0.2 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2590 PF10761.9 CQR52214.1 - 0.017 15.2 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2590) Pyr_redox PF00070.27 CQR52214.1 - 0.018 15.6 0.1 0.067 13.8 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 CQR52214.1 - 0.078 12.0 0.8 0.19 10.7 0.1 1.8 1 1 1 2 2 2 0 Lycopene cyclase protein F420_oxidored PF03807.17 CQR52214.1 - 7 7.3 8.9 1.7 9.3 2.7 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HATPase_c PF02518.26 CQR52216.1 - 4e-30 104.6 0.1 6.2e-30 104.0 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52216.1 - 1.4e-19 69.9 0.8 3.6e-19 68.6 0.8 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR52216.1 - 1e-10 41.8 0.8 1.7e-10 41.1 0.1 1.8 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 CQR52216.1 - 2.3e-06 27.5 0.0 4.6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR52216.1 - 0.00015 21.7 0.0 0.00036 20.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 CQR52216.1 - 0.0045 16.9 0.0 0.0083 16.0 0.0 1.4 1 0 0 1 1 1 1 GHKL domain Response_reg PF00072.24 CQR52218.1 - 3.1e-30 104.6 0.0 4.5e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR52218.1 - 4.2e-24 84.4 0.1 8.2e-24 83.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal NTP_transferase PF00483.23 CQR52220.1 - 7.8e-68 228.7 0.0 9.9e-68 228.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR52220.1 - 2.1e-06 28.2 0.0 3.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 CQR52220.1 - 0.0024 17.5 10.9 0.011 15.4 1.4 3.6 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 CQR52220.1 - 0.01 14.8 0.2 0.025 13.5 0.2 1.6 2 0 0 2 2 2 0 L-fucokinase Bactofilin PF04519.13 CQR52220.1 - 0.061 13.6 0.8 0.11 12.9 0.8 1.3 1 0 0 1 1 1 0 Polymer-forming cytoskeletal NTP_transferase PF00483.23 CQR52222.1 - 2.6e-07 30.5 0.0 4e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase Bactofilin PF04519.13 CQR52222.1 - 0.0004 20.6 0.6 0.00071 19.8 0.6 1.3 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.24 CQR52222.1 - 0.001 18.7 4.8 0.0046 16.6 0.9 2.7 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 CQR52222.1 - 0.028 13.4 0.1 0.043 12.8 0.1 1.3 1 0 0 1 1 1 0 L-fucokinase Phosphorylase PF00343.20 CQR52224.1 - 0 1056.4 0.0 0 1056.1 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate phosphorylase DUF3654 PF12376.8 CQR52224.1 - 0.02 15.1 0.0 0.051 13.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3654) GAF_2 PF13185.6 CQR52226.1 - 6.5e-15 55.6 0.0 1.1e-14 55.0 0.0 1.4 1 1 0 1 1 1 1 GAF domain GAF PF01590.26 CQR52226.1 - 4.3e-12 46.8 0.0 4.6e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 CQR52226.1 - 1.3e-06 28.8 0.0 1.6e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 GAF domain RTP PF02334.16 CQR52228.1 - 0.013 16.2 0.4 0.21 12.2 0.4 2.0 1 1 0 1 1 1 0 Replication terminator protein HTH_12 PF08461.10 CQR52228.1 - 0.033 14.1 0.2 0.047 13.6 0.2 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF5457 PF17540.2 CQR52228.1 - 0.041 14.0 0.0 0.047 13.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5457) HTH_45 PF14947.6 CQR52228.1 - 0.085 12.8 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.16 CQR52228.1 - 0.099 12.7 0.0 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 HemN C-terminal domain Bac_GDH PF05088.12 CQR52228.1 - 0.14 9.6 0.0 0.14 9.6 0.0 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Acetyltransf_3 PF13302.7 CQR52230.1 - 8.3e-29 101.0 0.0 1e-28 100.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR52230.1 - 1.1e-10 41.7 0.0 1.5e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 CQR52230.1 - 0.015 15.4 0.0 0.022 14.9 0.0 1.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR52230.1 - 0.016 14.9 0.0 0.036 13.7 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR52230.1 - 0.021 15.2 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MFS_1 PF07690.16 CQR52232.1 - 2.8e-53 181.1 53.6 1.2e-52 179.1 51.4 2.3 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR52232.1 - 2.1e-17 63.1 27.1 2.6e-12 46.4 10.2 2.6 2 0 0 2 2 2 2 Sugar (and other) transporter TRI12 PF06609.13 CQR52232.1 - 1.6e-11 43.4 15.6 1.6e-11 43.4 15.6 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MarR PF01047.22 CQR52234.1 - 1e-16 60.6 0.0 1.6e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR52234.1 - 1.3e-10 41.0 0.0 2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR52234.1 - 5.6e-09 36.4 0.0 1.6e-08 34.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 CQR52234.1 - 0.00017 21.7 0.0 0.00029 20.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR52234.1 - 0.00038 20.0 0.0 0.00066 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 CQR52234.1 - 0.024 15.0 0.0 0.056 13.8 0.0 1.7 1 1 0 1 1 1 0 Penicillinase repressor HTH_20 PF12840.7 CQR52234.1 - 0.035 14.2 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 CQR52234.1 - 0.045 13.6 0.0 6.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB IreB PF06135.12 CQR52234.1 - 0.14 12.3 0.1 0.43 10.8 0.1 1.9 1 1 0 1 1 1 0 IreB regulatory phosphoprotein MFS_1 PF07690.16 CQR52236.1 - 5.4e-32 111.1 44.4 1.8e-17 63.3 9.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR52236.1 - 4.8e-24 84.6 26.9 6e-24 84.3 26.9 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 CQR52236.1 - 0.006 15.5 1.0 0.006 15.5 1.0 3.1 3 0 0 3 3 3 2 Sugar (and other) transporter ABC_tran PF00005.27 CQR52239.1 - 4.6e-23 82.2 0.0 7.4e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52239.1 - 3.6e-15 56.6 0.3 2.2e-08 34.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 CQR52239.1 - 0.0014 18.3 0.0 0.0045 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR52239.1 - 0.0032 17.8 0.1 0.0065 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR52239.1 - 0.0071 16.1 0.0 0.029 14.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR52239.1 - 0.0085 15.8 0.2 0.016 15.0 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR52239.1 - 0.012 15.5 0.1 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 CQR52239.1 - 0.017 14.8 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 CQR52239.1 - 0.018 14.5 0.2 0.41 10.0 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 CQR52239.1 - 0.021 14.7 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain MeaB PF03308.16 CQR52239.1 - 0.022 13.7 0.1 0.037 13.0 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 CQR52239.1 - 0.033 14.7 0.1 0.05 14.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR52239.1 - 0.072 13.5 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 CQR52239.1 - 0.14 12.2 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 CQR52239.1 - 0.19 11.2 0.1 0.31 10.6 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 CQR52239.1 - 0.22 11.1 0.7 0.34 10.5 0.7 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain EcsB PF05975.12 CQR52240.1 - 2.2e-69 234.1 23.5 2.6e-69 233.9 23.5 1.0 1 0 0 1 1 1 1 Bacterial ABC transporter protein EcsB Sec20 PF03908.13 CQR52242.1 - 0.12 12.3 0.2 0.14 12.1 0.2 1.1 1 0 0 1 1 1 0 Sec20 HI0933_like PF03486.14 CQR52245.1 - 2.3e-147 490.9 0.0 2.7e-147 490.8 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 CQR52245.1 - 2.6e-15 56.4 5.7 3.6e-09 36.2 1.8 2.9 2 1 0 2 2 2 2 FAD binding domain GIDA PF01134.22 CQR52245.1 - 3.3e-11 42.9 11.4 3.9e-06 26.2 6.6 3.1 2 1 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 CQR52245.1 - 3.9e-11 42.7 0.0 1.2e-10 41.1 0.1 1.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR52245.1 - 1.5e-10 41.1 0.3 2.2e-10 40.5 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 CQR52245.1 - 1e-09 38.5 5.3 0.00046 19.9 2.2 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR52245.1 - 3.7e-07 30.6 0.3 0.0081 16.7 0.5 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR52245.1 - 1.6e-05 25.0 2.4 6e-05 23.2 2.4 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 CQR52245.1 - 1.7e-05 24.3 1.3 2.8e-05 23.5 1.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 CQR52245.1 - 2.3e-05 23.8 1.8 0.0031 16.8 0.8 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 CQR52245.1 - 0.00028 19.9 2.8 0.23 10.2 0.1 2.3 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 CQR52245.1 - 0.00062 19.1 2.6 0.027 13.7 1.2 2.4 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 CQR52245.1 - 0.0022 18.0 2.4 1.2 9.1 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 CQR52245.1 - 0.014 14.5 2.9 0.13 11.3 0.8 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 CQR52245.1 - 0.021 14.2 0.1 0.036 13.3 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 CQR52245.1 - 0.033 13.5 1.8 0.034 13.4 0.0 1.9 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase HATPase_c PF02518.26 CQR52247.1 - 6.7e-20 71.7 0.0 2e-19 70.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52247.1 - 3.7e-14 52.5 0.1 1.5e-13 50.6 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 CQR52247.1 - 6.6e-06 26.3 0.0 1.4e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 CQR52247.1 - 0.00058 19.8 0.0 0.0014 18.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain SseB_C PF14581.6 CQR52247.1 - 0.013 15.5 0.0 0.044 13.9 0.0 1.8 1 0 0 1 1 1 0 SseB protein C-terminal domain HATPase_c_5 PF14501.6 CQR52247.1 - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 CQR52247.1 - 0.098 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 CQR52247.1 - 0.11 12.7 0.1 0.26 11.5 0.1 1.7 1 1 0 1 1 1 0 PAS fold DHHC PF01529.20 CQR52247.1 - 0.51 10.5 2.5 29 4.8 1.1 2.4 2 0 0 2 2 2 0 DHHC palmitoyltransferase Disulph_isomer PF06491.11 CQR52249.1 - 1.4e-61 206.6 0.0 1.5e-61 206.4 0.0 1.0 1 0 0 1 1 1 1 Disulphide isomerase NAD_synthase PF02540.17 CQR52251.1 - 3.5e-62 209.7 0.0 4.4e-62 209.4 0.0 1.1 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 CQR52251.1 - 8.7e-05 21.5 0.1 0.0016 17.3 0.0 2.2 2 1 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 CQR52251.1 - 0.0071 15.9 0.2 0.37 10.3 0.2 2.3 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 CQR52251.1 - 0.017 14.8 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 Asparagine synthase Hydrolase_4 PF12146.8 CQR52253.1 - 4.2e-10 39.3 0.0 2.6e-08 33.5 0.1 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR52253.1 - 2.5e-05 24.1 0.1 0.00022 21.0 0.1 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR52253.1 - 6.8e-05 23.6 0.0 0.0023 18.6 0.0 2.0 1 1 1 2 2 2 1 Alpha/beta hydrolase family DUF1749 PF08538.10 CQR52253.1 - 0.0016 17.6 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1749) BAAT_C PF08840.11 CQR52253.1 - 0.016 15.1 0.0 0.025 14.5 0.0 1.1 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.20 CQR52253.1 - 0.035 13.8 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative esterase DUF915 PF06028.11 CQR52253.1 - 0.13 11.6 0.0 0.28 10.5 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) ACPS PF01648.20 CQR52255.1 - 5.7e-18 65.1 0.0 6.4e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily 4PPT_N PF17837.1 CQR52255.1 - 0.0055 16.8 1.1 0.23 11.6 1.1 2.3 1 1 0 1 1 1 1 4'-phosphopantetheinyl transferase N-terminal domain HhH-GPD PF00730.25 CQR52257.1 - 1.1e-22 80.5 0.0 1.9e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein NUDIX_4 PF14815.6 CQR52257.1 - 3e-18 65.8 0.1 1.7e-13 50.5 0.1 2.5 2 0 0 2 2 2 2 NUDIX domain HHH PF00633.23 CQR52257.1 - 6.5e-05 22.6 0.0 0.00019 21.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif EccE PF11203.8 CQR52257.1 - 0.067 13.5 0.5 0.19 12.1 0.5 1.8 1 0 0 1 1 1 0 Putative type VII ESX secretion system translocon, EccE EndIII_4Fe-2S PF10576.9 CQR52257.1 - 0.69 10.3 7.6 1.3 9.5 7.6 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Sod_Fe_C PF02777.18 CQR52259.1 - 7.8e-42 141.6 0.0 1.2e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 CQR52259.1 - 7e-31 106.5 0.6 1.2e-30 105.8 0.6 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Acetyltransf_1 PF00583.25 CQR52262.1 - 1e-17 64.5 0.0 1.2e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR52262.1 - 3.1e-15 56.3 0.0 3.7e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR52262.1 - 2.6e-14 53.4 0.1 3.7e-14 52.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR52262.1 - 2.9e-09 36.8 0.0 4.2e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 CQR52262.1 - 1.5e-07 31.5 0.2 1e-05 25.6 0.2 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR52262.1 - 3.2e-05 24.1 0.0 3.6e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 CQR52262.1 - 0.00016 21.9 0.0 0.00021 21.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR52262.1 - 0.00072 20.2 0.0 0.00082 20.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 CQR52262.1 - 0.00099 18.7 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_13 PF13880.6 CQR52262.1 - 0.012 15.6 0.0 0.079 12.9 0.0 2.0 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 CQR52262.1 - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR52262.1 - 0.13 12.4 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.6 CQR52262.1 - 0.13 11.7 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 PanZ PF12568.8 CQR52262.1 - 0.15 11.8 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Peptidase_S24 PF00717.23 CQR52264.1 - 1.7e-15 56.7 0.1 2.9e-15 56.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 CQR52264.1 - 3.1e-14 52.9 0.0 4.3e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Signal peptidase, peptidase S26 DUF1730 PF08331.10 CQR52266.1 - 1.1e-16 60.4 0.0 2.3e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1730) Fer4_16 PF13484.6 CQR52266.1 - 2.7e-16 60.2 5.2 4.6e-16 59.5 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain HEAT_2 PF13646.6 CQR52266.1 - 5.7e-12 45.9 0.5 1.6e-11 44.4 0.5 1.7 1 0 0 1 1 1 1 HEAT repeats Fer4_7 PF12838.7 CQR52266.1 - 2e-05 25.1 5.7 4.6e-05 23.9 5.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain HEAT_PBS PF03130.16 CQR52266.1 - 0.00013 22.3 9.3 0.015 15.9 2.8 4.0 5 0 0 5 5 3 2 PBS lyase HEAT-like repeat Fer4_21 PF14697.6 CQR52266.1 - 0.00039 20.5 6.0 0.15 12.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR52266.1 - 0.0006 19.8 8.6 0.037 14.1 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 CQR52266.1 - 0.0009 19.0 13.0 0.0046 16.7 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 CQR52266.1 - 0.012 15.7 12.2 0.91 9.7 12.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain HEAT_EZ PF13513.6 CQR52266.1 - 0.037 14.5 0.8 0.65 10.6 0.4 2.8 1 1 1 2 2 2 0 HEAT-like repeat Fer4_9 PF13187.6 CQR52266.1 - 0.047 13.9 11.1 0.094 12.9 2.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Arm PF00514.23 CQR52266.1 - 0.14 12.2 0.1 1.7 8.8 0.0 2.7 3 0 0 3 3 3 0 Armadillo/beta-catenin-like repeat Fer4_3 PF12798.7 CQR52266.1 - 0.18 12.8 11.7 1.6 9.8 3.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 CQR52266.1 - 0.34 11.1 13.8 0.69 10.1 4.8 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 CQR52266.1 - 0.93 10.1 7.0 3.1 8.4 7.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR52266.1 - 0.95 10.1 12.5 4.7 8.0 0.7 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 CQR52266.1 - 4.9 7.7 10.8 36 4.9 10.8 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 CQR52266.1 - 9 6.9 9.0 8.5 7.0 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I UPF0154 PF03672.13 CQR52268.1 - 1e-13 51.1 6.6 1.4e-13 50.6 6.6 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0154) DUF4083 PF13314.6 CQR52268.1 - 0.1 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) GTP_cyclohydroI PF01227.22 CQR52270.1 - 9.6e-76 253.2 0.1 1.1e-75 253.0 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 CQR52270.1 - 0.00096 19.3 0.0 0.0023 18.0 0.0 1.6 1 0 0 1 1 1 1 QueF-like protein Sod_Fe_C PF02777.18 CQR52272.1 - 6.3e-36 122.6 0.5 1.5e-35 121.5 0.5 1.7 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 CQR52272.1 - 1.5e-30 105.5 2.8 3.6e-30 104.3 2.8 1.7 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF2935 PF11155.8 CQR52272.1 - 3.8e-14 53.1 0.9 4.8e-14 52.7 0.1 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF2935) GDE_C PF06202.14 CQR52274.1 - 1.4e-75 254.6 5.3 2e-75 254.2 5.3 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid6H PF17389.2 CQR52274.1 - 7.8e-05 22.1 1.8 7.8e-05 22.1 1.8 2.3 3 0 0 3 3 3 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_63 PF03200.16 CQR52274.1 - 0.0011 17.8 0.2 0.0023 16.8 0.2 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 63 C-terminal domain DUF4934 PF16288.5 CQR52274.1 - 0.027 14.4 0.0 0.17 11.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4934) BPD_transp_1 PF00528.22 CQR52276.1 - 3.2e-15 56.4 11.9 5.1e-15 55.7 12.0 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52277.1 - 9.6e-13 48.3 12.2 9.6e-13 48.3 12.2 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR52280.1 - 1.9e-14 54.4 9.8 4.7e-14 53.1 9.8 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ETRAMP PF09716.10 CQR52280.1 - 0.083 13.0 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) SHOCT PF09851.9 CQR52280.1 - 0.11 12.3 0.6 0.54 10.1 0.1 2.1 2 0 0 2 2 2 0 Short C-terminal domain Response_reg PF00072.24 CQR52284.1 - 1.6e-24 86.2 0.0 3.5e-23 81.9 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52284.1 - 4.2e-21 75.0 0.0 2.4e-20 72.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52284.1 - 4.7e-13 48.9 6.6 6.6e-06 26.1 0.2 3.4 4 0 0 4 4 4 2 Bacterial regulatory helix-turn-helix proteins, AraC family His_kinase PF06580.13 CQR52285.1 - 9.1e-20 70.8 2.9 9.1e-20 70.8 2.9 2.1 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR52285.1 - 4.6e-09 36.4 5.5 7.3e-09 35.8 5.5 1.3 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR52285.1 - 9e-09 35.6 0.0 3.4e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR52285.1 - 4.2e-05 24.0 0.1 0.00011 22.7 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR52285.1 - 0.014 15.3 1.9 0.015 15.2 0.2 1.9 2 0 0 2 2 2 0 GHKL domain Hydrolase_4 PF12146.8 CQR52287.1 - 1.7e-08 34.1 0.3 0.0003 20.2 0.2 2.4 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR52287.1 - 6.1e-08 32.6 0.1 9e-06 25.5 0.0 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR52287.1 - 1e-07 32.8 0.0 4.4e-05 24.2 0.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 CQR52287.1 - 3.4e-05 23.7 0.1 0.077 12.8 0.1 2.7 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.21 CQR52287.1 - 0.00055 19.5 0.0 0.0015 18.0 0.0 1.6 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.12 CQR52287.1 - 0.033 12.9 0.2 3.5 6.2 0.1 2.1 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 CQR52287.1 - 0.046 13.8 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein DUF818 PF05677.12 CQR52287.1 - 0.064 12.2 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) DUF829 PF05705.14 CQR52287.1 - 0.076 12.9 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) Abhydrolase_3 PF07859.13 CQR52287.1 - 0.097 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold FSH1 PF03959.13 CQR52287.1 - 0.1 12.2 0.0 0.71 9.5 0.0 2.0 1 1 1 2 2 2 0 Serine hydrolase (FSH1) DLH PF01738.18 CQR52287.1 - 0.14 11.7 0.0 0.6 9.6 0.0 1.8 2 0 0 2 2 2 0 Dienelactone hydrolase family Lipase PF00151.19 CQR52287.1 - 0.17 11.1 0.1 0.25 10.6 0.1 1.1 1 0 0 1 1 1 0 Lipase IclR PF01614.18 CQR52290.1 - 1.4e-18 66.9 0.1 4.3e-18 65.4 0.1 1.8 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 CQR52290.1 - 1.1e-16 60.3 0.2 2.9e-16 59.0 0.2 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 CQR52290.1 - 3.3e-09 36.5 0.3 8.4e-09 35.2 0.3 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR52290.1 - 1.4e-05 24.6 0.1 3.4e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR52290.1 - 1.7e-05 24.6 1.3 0.00013 21.8 0.1 2.8 2 1 0 2 2 2 1 MarR family HTH_11 PF08279.12 CQR52290.1 - 4.1e-05 23.4 2.3 5e-05 23.2 0.2 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 CQR52290.1 - 0.00038 20.5 0.5 0.0051 16.9 0.3 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR52290.1 - 0.00083 19.1 0.5 0.0083 15.9 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Rrf2 PF02082.20 CQR52290.1 - 0.0027 18.0 0.3 0.0078 16.5 0.1 1.8 2 0 0 2 2 2 1 Transcriptional regulator Penicillinase_R PF03965.16 CQR52290.1 - 0.0029 17.9 0.1 0.0064 16.8 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 CQR52290.1 - 0.0047 16.8 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 CQR52290.1 - 0.005 16.8 0.1 0.0098 15.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR52290.1 - 0.0068 16.4 0.1 0.019 14.9 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 CQR52290.1 - 0.016 14.9 0.6 0.096 12.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma54_DBD PF04552.13 CQR52290.1 - 0.032 13.9 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54, DNA binding domain LexA_DNA_bind PF01726.16 CQR52290.1 - 0.038 13.8 0.0 0.13 12.1 0.0 2.0 1 0 0 1 1 1 0 LexA DNA binding domain UPF0122 PF04297.14 CQR52290.1 - 0.05 13.8 0.0 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_40 PF14493.6 CQR52290.1 - 0.059 13.8 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 CQR52290.1 - 0.076 12.9 0.3 0.21 11.5 0.3 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.10 CQR52290.1 - 0.11 12.6 0.0 0.25 11.4 0.0 1.7 1 1 0 1 1 1 0 FeoC like transcriptional regulator HTH_45 PF14947.6 CQR52290.1 - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix GerE PF00196.19 CQR52292.1 - 2.9e-20 71.5 0.2 5.8e-20 70.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR52292.1 - 1.1e-07 31.4 0.0 5e-07 29.3 0.0 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR52292.1 - 0.00031 20.2 0.1 0.0012 18.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 PocR PF10114.9 CQR52292.1 - 0.0017 18.2 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 Sensory domain found in PocR HTH_23 PF13384.6 CQR52292.1 - 0.013 15.3 0.0 0.048 13.5 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.6 CQR52292.1 - 0.038 14.4 3.1 0.12 12.9 0.3 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Aconitase PF00330.20 CQR52294.1 - 2.5e-177 590.5 0.0 3.2e-177 590.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 CQR52294.1 - 2.4e-45 154.1 0.0 4.5e-45 153.2 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Amidase_6 PF12671.7 CQR52296.1 - 6.3e-33 114.2 6.1 8.8e-33 113.7 6.1 1.2 1 0 0 1 1 1 1 Putative amidase domain CHAP PF05257.16 CQR52296.1 - 0.16 12.6 6.0 0.52 10.9 6.0 1.9 1 1 0 1 1 1 0 CHAP domain Dala_Dala_lig_C PF07478.13 CQR52298.1 - 3.1e-74 248.9 0.0 4.1e-74 248.5 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 CQR52298.1 - 3.4e-28 98.1 0.0 9.5e-28 96.7 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase N-terminus CPSase_L_D2 PF02786.17 CQR52298.1 - 2.9e-10 40.0 0.0 4.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 CQR52298.1 - 2.1e-08 33.9 0.0 3.6e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 CQR52298.1 - 0.018 14.6 1.6 0.14 11.8 1.6 2.1 1 1 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 CQR52298.1 - 0.025 14.4 0.2 0.038 13.8 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 CQR52298.1 - 0.047 13.7 0.1 0.11 12.6 0.1 1.7 1 1 0 1 1 1 0 ATP-grasp domain UvdE PF03851.14 CQR52303.1 - 4.7e-74 249.1 0.0 6.1e-74 248.7 0.0 1.1 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.24 CQR52303.1 - 0.013 14.9 0.1 0.034 13.6 0.0 1.7 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Inositol_P PF00459.25 CQR52305.1 - 5.6e-67 226.1 0.1 6.8e-67 225.8 0.1 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF1424 PF07232.11 CQR52305.1 - 0.075 12.0 0.0 0.092 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative rep protein (DUF1424) Rho_Binding PF08912.11 CQR52307.1 - 0.11 13.3 0.7 0.11 13.3 0.7 1.8 2 0 0 2 2 2 0 Rho Binding Cu_amine_oxidN1 PF07833.11 CQR52309.1 - 2.3e-17 63.2 0.1 5.3e-17 62.1 0.1 1.6 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain Lipase_GDSL_2 PF13472.6 CQR52309.1 - 1.3e-16 61.5 0.7 2.3e-16 60.7 0.3 1.6 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR52309.1 - 1.2e-11 45.0 0.0 2e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Pep_deformylase PF01327.21 CQR52311.1 - 2e-44 151.0 0.0 2.3e-44 150.8 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase Aminotran_3 PF00202.21 CQR52315.1 - 7.2e-68 229.1 0.1 9e-68 228.8 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III LytR_cpsA_psr PF03816.14 CQR52317.1 - 1.1e-42 145.8 0.1 1.4e-42 145.4 0.1 1.1 1 0 0 1 1 1 1 Cell envelope-related transcriptional attenuator domain PLDc_N PF13396.6 CQR52317.1 - 0.0008 19.3 0.2 0.0015 18.4 0.2 1.3 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal AhpC-TSA PF00578.21 CQR52319.1 - 4.4e-40 136.5 0.0 5e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR52319.1 - 2.1e-24 85.9 0.0 2.4e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 CQR52319.1 - 0.0052 16.9 0.0 0.014 15.5 0.0 1.6 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF2229 PF09989.9 CQR52322.1 - 7.4e-84 280.7 0.0 1.2e-76 257.1 0.0 3.2 3 0 0 3 3 3 2 CoA enzyme activase uncharacterised domain (DUF2229) BcrAD_BadFG PF01869.20 CQR52322.1 - 5.6e-52 176.9 5.1 2.3e-31 109.3 3.1 2.6 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family HGD-D PF06050.13 CQR52322.1 - 2.6e-48 165.5 0.0 2.5e-47 162.2 0.0 2.3 2 0 0 2 2 2 1 2-hydroxyglutaryl-CoA dehydratase, D-component FGGY_C PF02782.16 CQR52322.1 - 0.2 11.4 1.4 0.49 10.1 0.2 2.1 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 CQR52322.1 - 0.42 11.1 6.3 16 6.0 0.0 4.8 4 2 0 4 4 4 0 Cell division protein FtsA DinB_2 PF12867.7 CQR52324.1 - 0.00028 21.4 0.0 0.00055 20.4 0.0 1.5 1 1 0 1 1 1 1 DinB superfamily MarR PF01047.22 CQR52326.1 - 8.8e-18 64.0 0.1 2.1e-17 62.8 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR52326.1 - 2.4e-12 46.5 0.3 4.2e-12 45.8 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR52326.1 - 4.7e-09 36.6 0.1 7.9e-09 35.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR52326.1 - 0.00036 20.0 0.7 0.0021 17.6 0.0 2.6 3 1 1 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 CQR52326.1 - 0.00053 19.7 0.2 0.00083 19.1 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 CQR52326.1 - 0.0018 18.1 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 CQR52326.1 - 0.0022 18.1 0.1 0.0054 16.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 CQR52326.1 - 0.02 15.0 0.7 0.15 12.1 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 CQR52326.1 - 0.065 13.6 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF1495 PF07381.11 CQR52326.1 - 0.069 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) AbiEi_4 PF13338.6 CQR52326.1 - 0.14 12.3 0.1 3.1 8.0 0.0 2.7 2 1 1 3 3 3 0 Transcriptional regulator, AbiEi antitoxin MFS_1 PF07690.16 CQR52328.1 - 2.7e-51 174.6 46.4 1e-50 172.6 45.7 2.1 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR52328.1 - 0.0056 15.6 13.0 0.0056 15.6 13.0 3.4 2 1 1 3 3 3 2 Sugar (and other) transporter WYL PF13280.6 CQR52330.1 - 1.2e-31 110.1 0.1 1.7e-31 109.6 0.1 1.2 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR52330.1 - 8.9e-13 48.0 0.0 2.1e-12 46.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR52330.1 - 0.00017 21.3 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PuR_N PF09182.10 CQR52330.1 - 0.011 15.6 0.6 0.039 13.9 0.6 1.9 1 1 0 1 1 1 0 Bacterial purine repressor, N-terminal Rrf2 PF02082.20 CQR52330.1 - 0.13 12.6 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator MFS_1 PF07690.16 CQR52332.1 - 9.2e-18 64.3 40.1 9.2e-18 64.3 40.1 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 CQR52332.1 - 3.8e-09 35.5 14.7 3.8e-09 35.5 14.7 1.8 1 1 0 2 2 2 1 Transmembrane secretion effector SNARE_assoc PF09335.11 CQR52334.1 - 5.5e-22 78.5 17.6 8.6e-21 74.6 11.2 3.0 3 0 0 3 3 3 2 SNARE associated Golgi protein Polysacc_deac_1 PF01522.21 CQR52336.1 - 1.1e-30 106.1 0.0 3.2e-30 104.6 0.0 1.8 2 0 0 2 2 2 1 Polysaccharide deacetylase Cu_amine_oxidN1 PF07833.11 CQR52336.1 - 0.00029 21.3 0.0 0.0013 19.1 0.0 2.1 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain Glyco_hydro_57 PF03065.15 CQR52336.1 - 0.14 11.3 0.0 0.58 9.3 0.0 1.9 1 1 0 1 1 1 0 Glycosyl hydrolase family 57 DUF58 PF01882.18 CQR52338.1 - 1.1e-16 60.9 0.0 2.1e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.19 CQR52341.1 - 6.8e-31 107.0 0.0 1.9e-30 105.6 0.0 1.8 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 CQR52341.1 - 6.8e-06 26.3 7.1 6.8e-06 26.3 7.1 3.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4129) GMP_synt_C PF00958.22 CQR52343.1 - 5.5e-46 154.6 0.3 9.9e-46 153.7 0.3 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.28 CQR52343.1 - 1.5e-41 142.2 0.0 2.2e-41 141.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 CQR52343.1 - 7.5e-11 42.2 0.1 3.8e-10 39.9 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.17 CQR52343.1 - 1.3e-10 40.8 0.1 3.2e-06 26.5 0.1 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 CQR52343.1 - 1.1e-05 24.4 0.1 0.00012 21.0 0.1 2.4 3 0 0 3 3 3 1 tRNA methyl transferase Asn_synthase PF00733.21 CQR52343.1 - 5.4e-05 23.0 0.1 9.6e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 CQR52343.1 - 8.7e-05 22.1 0.0 0.0063 16.0 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 CQR52343.1 - 0.0026 17.6 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.14 CQR52343.1 - 0.013 15.1 0.1 0.03 13.9 0.1 1.8 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) SpoVAE PF14097.6 CQR52343.1 - 0.051 13.2 0.2 0.088 12.5 0.2 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AE1 PadR PF03551.14 CQR52345.1 - 2.1e-08 34.0 0.2 3.2e-08 33.4 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR52345.1 - 0.00015 21.9 0.0 0.00038 20.6 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.9 CQR52345.1 - 0.00035 20.8 0.6 0.0014 18.9 0.1 2.0 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HxlR PF01638.17 CQR52345.1 - 0.0051 16.6 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Adhesin_E PF16747.5 CQR52345.1 - 0.029 14.4 0.5 0.15 12.1 0.1 2.1 2 0 0 2 2 2 0 Surface-adhesin protein E NmrA PF05368.13 CQR52347.1 - 2.6e-21 76.3 0.2 3.7e-21 75.7 0.2 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 CQR52347.1 - 5.1e-16 59.1 0.1 8.5e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 CQR52347.1 - 2.5e-08 33.7 0.1 4.1e-05 23.2 0.0 2.8 2 1 1 3 3 3 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 CQR52347.1 - 0.00034 19.7 0.4 0.06 12.3 0.4 2.2 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 CQR52347.1 - 0.0059 16.1 0.1 0.022 14.2 0.0 1.9 3 0 0 3 3 3 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 CQR52347.1 - 0.014 14.5 0.0 0.044 12.9 0.0 1.8 2 0 0 2 2 2 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 CQR52347.1 - 0.023 14.1 0.0 0.046 13.1 0.0 1.5 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase DapB_N PF01113.20 CQR52347.1 - 0.043 13.9 0.0 0.099 12.8 0.0 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_4 PF07993.12 CQR52347.1 - 0.059 12.5 0.7 7.8 5.6 0.0 2.4 1 1 2 3 3 3 0 Male sterility protein DUF3798 PF12683.7 CQR52347.1 - 0.066 12.6 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Semialdhyde_dh PF01118.24 CQR52347.1 - 0.1 13.0 0.1 0.29 11.6 0.0 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 CQR52347.1 - 0.11 11.6 0.0 1.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein TrkA_N PF02254.18 CQR52347.1 - 0.11 12.7 0.1 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Xan_ur_permease PF00860.20 CQR52349.1 - 3.9e-43 147.6 45.2 1.1e-42 146.2 44.9 1.8 1 1 0 1 1 1 1 Permease family Sulfate_transp PF00916.20 CQR52349.1 - 8.8e-09 34.6 29.9 8.8e-09 34.6 29.9 2.4 1 1 0 1 1 1 1 Sulfate permease family PMT_2 PF13231.6 CQR52351.1 - 1.7e-07 31.6 46.8 5.6e-07 29.9 27.3 2.5 2 0 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase CBM_35 PF16990.5 CQR52351.1 - 0.0044 17.3 0.1 0.0072 16.6 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) PMT_4TMC PF16192.5 CQR52353.1 - 4.1e-27 95.1 21.6 4.1e-27 95.1 21.6 4.6 5 2 0 5 5 5 1 C-terminal four TMM region of protein-O-mannosyltransferase PMT_2 PF13231.6 CQR52353.1 - 4.9e-14 52.8 34.5 1.8e-12 47.7 13.6 5.6 5 0 0 5 5 5 3 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 CQR52353.1 - 4.7e-13 49.3 19.0 1.4e-10 41.2 15.0 5.9 4 2 2 6 6 6 2 Dolichyl-phosphate-mannose-protein mannosyltransferase GT87 PF09594.10 CQR52353.1 - 9.2e-08 32.1 22.7 9.2e-08 32.1 22.7 5.0 6 1 0 6 6 6 1 Glycosyltransferase family 87 PIG-U PF06728.13 CQR52353.1 - 2.9e-07 29.9 6.5 2.9e-07 29.9 6.5 3.7 3 1 1 4 4 4 1 GPI transamidase subunit PIG-U F5_F8_type_C PF00754.25 CQR52353.1 - 3.3e-05 24.0 0.0 8.3e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 F5/8 type C domain CBM_4_9 PF02018.17 CQR52353.1 - 0.00069 19.9 0.1 0.0013 19.0 0.1 1.5 1 0 0 1 1 1 1 Carbohydrate binding domain Glycos_transf_2 PF00535.26 CQR52354.1 - 2e-33 115.6 0.1 3.3e-33 114.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR52354.1 - 1.8e-10 41.1 0.1 2.3e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR52354.1 - 1.5e-07 31.1 0.0 2.8e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 CQR52354.1 - 0.0024 17.4 0.1 0.005 16.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 CQR52354.1 - 0.05 14.1 0.1 0.099 13.2 0.1 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 GtrA PF04138.14 CQR52355.1 - 2.5e-27 95.4 6.9 3.1e-27 95.2 6.9 1.1 1 0 0 1 1 1 1 GtrA-like protein DUF3784 PF12650.7 CQR52355.1 - 0.005 17.0 2.7 0.0055 16.9 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3784) DUF3007 PF11460.8 CQR52355.1 - 0.53 10.6 3.6 3.9 7.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Sortase PF04203.13 CQR52356.1 - 1.1e-32 112.5 0.2 1.4e-32 112.1 0.2 1.1 1 0 0 1 1 1 1 Sortase domain Transglut_core PF01841.19 CQR52357.1 - 1.7e-23 83.2 0.0 3.5e-23 82.2 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 CQR52357.1 - 3.6e-08 33.1 1.6 6.1e-07 29.1 1.6 2.2 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core3 PF13471.6 CQR52357.1 - 5.8e-05 23.0 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily LPAM_1 PF08139.12 CQR52357.1 - 1.4 9.5 3.3 2.8 8.6 3.3 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Acyl-ACP_TE PF01643.17 CQR52358.1 - 4.3e-28 98.3 0.0 5.4e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Acyl-ACP thioesterase 4HBT PF03061.22 CQR52358.1 - 0.0023 18.2 0.0 0.047 14.0 0.0 2.4 3 0 0 3 3 3 1 Thioesterase superfamily 4HBT_2 PF13279.6 CQR52358.1 - 0.17 12.4 0.0 16 6.0 0.0 2.3 2 1 0 2 2 2 0 Thioesterase-like superfamily Sigma70_r2 PF04542.14 CQR52359.1 - 1.3e-18 66.5 3.4 2.9e-18 65.4 3.4 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR52359.1 - 1.4e-08 34.3 0.0 2.2e-07 30.4 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_16 PF12645.7 CQR52359.1 - 0.00042 20.3 1.6 0.0011 19.0 1.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 CQR52359.1 - 0.00064 19.7 1.2 0.043 13.7 1.2 2.4 1 1 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 CQR52359.1 - 0.0028 17.1 0.0 0.0079 15.7 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF4179 PF13786.6 CQR52360.1 - 6.8e-15 55.3 0.0 1.8e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4179) DUF5643 PF18705.1 CQR52360.1 - 8.1e-15 54.8 4.4 5.2e-14 52.2 1.6 2.5 2 0 0 2 2 2 1 Family of unknown function (DUF5643) Topoisom_bac PF01131.20 CQR52361.1 - 1.2e-120 403.4 0.0 1.7e-120 402.9 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 CQR52361.1 - 2.3e-13 50.2 0.0 6.2e-13 48.9 0.0 1.8 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 CQR52361.1 - 7.9e-06 25.6 11.1 0.01 15.6 2.3 2.5 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 CQR52361.1 - 0.0086 16.2 1.2 0.0086 16.2 1.2 2.5 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 CQR52361.1 - 0.013 14.9 1.9 0.32 10.5 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 CQR52361.1 - 0.013 15.8 5.1 0.48 10.8 0.7 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.7 CQR52361.1 - 0.031 14.3 6.4 0.089 12.8 6.4 1.8 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.14 CQR52361.1 - 0.033 14.5 3.1 0.29 11.5 0.1 2.5 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme EBP PF05241.12 CQR52361.1 - 0.066 12.7 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Emopamil binding protein DNA_ligase_ZBD PF03119.16 CQR52361.1 - 0.084 12.9 3.4 3.6 7.7 1.2 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 CQR52361.1 - 0.11 12.2 3.4 1.7 8.5 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 CQR52361.1 - 0.17 11.8 7.1 0.27 11.2 0.9 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 CQR52361.1 - 0.17 11.8 7.0 0.58 10.1 1.0 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 CQR52361.1 - 0.27 10.9 4.9 9 6.1 0.1 2.7 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.10 CQR52361.1 - 0.36 11.0 4.7 0.069 13.3 0.7 1.9 2 0 0 2 2 1 0 Probable metal-binding protein (DUF2387) YdjO PF14169.6 CQR52361.1 - 0.53 10.0 3.2 0.33 10.7 0.5 2.0 1 1 1 2 2 2 0 Cold-inducible protein YdjO zf-NADH-PPase PF09297.11 CQR52361.1 - 0.54 10.0 6.2 8.3 6.2 0.6 2.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 CQR52361.1 - 2.2 8.4 7.3 14 5.7 0.9 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 CQR52361.1 - 3.7 7.5 9.0 3.8 7.4 0.9 2.7 3 0 0 3 3 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 CQR52361.1 - 3.9 7.1 10.5 0.11 12.0 1.5 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding zf_Rg PF17915.1 CQR52361.1 - 4.5 6.8 6.4 1.6 8.2 0.4 2.4 2 0 0 2 2 2 0 Reverse gyrase zinc finger Zn_Tnp_IS91 PF14319.6 CQR52361.1 - 5.2 7.2 10.4 7.4 6.7 2.0 3.2 2 1 1 3 3 3 0 Transposase zinc-binding domain HypA PF01155.19 CQR52361.1 - 7.8 6.6 7.1 1.4e+02 2.5 7.2 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 CQR52361.1 - 9.9 6.2 7.1 24 5.0 7.1 1.7 1 1 0 1 1 1 0 zinc-ribbons MFS_1 PF07690.16 CQR52362.1 - 4.5e-47 160.7 54.0 1.2e-30 106.7 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Phage_holin_3_6 PF07332.11 CQR52362.1 - 0.012 15.6 0.0 0.012 15.6 0.0 5.4 3 2 1 4 4 4 0 Putative Actinobacterial Holin-X, holin superfamily III MFS_1_like PF12832.7 CQR52362.1 - 0.078 11.8 0.0 0.078 11.8 0.0 2.7 1 1 1 2 2 2 0 MFS_1 like family DUF1294 PF06961.13 CQR52363.1 - 1.5e-23 82.8 0.3 2.8e-23 81.9 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF2157 PF09925.9 CQR52363.1 - 0.061 13.1 0.5 0.076 12.8 0.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Usp PF00582.26 CQR52364.1 - 4.6e-34 117.9 0.1 5.6e-34 117.7 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family AIRC PF00731.20 CQR52365.1 - 2.8e-65 218.4 1.0 3.1e-65 218.3 1.0 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 CQR52366.1 - 7.7e-58 194.8 0.0 1.2e-57 194.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 CQR52366.1 - 5.2e-13 48.5 0.1 1.3e-12 47.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPSase_L_D2 PF02786.17 CQR52366.1 - 3.2e-09 36.6 0.1 4.9e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 CQR52366.1 - 9.4e-06 25.3 0.0 7.9e-05 22.3 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 CQR52366.1 - 0.00028 20.7 0.1 0.0012 18.7 0.0 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 CQR52366.1 - 0.001 18.6 0.1 0.0018 17.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 CQR52366.1 - 0.0019 17.6 0.0 0.0038 16.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 CQR52366.1 - 0.09 12.9 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 CQR52366.1 - 0.092 13.3 0.2 1.1 9.8 0.1 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain Lyase_1 PF00206.20 CQR52367.1 - 4.6e-76 256.2 0.0 6.1e-76 255.8 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 CQR52367.1 - 5e-23 81.4 0.0 4.3e-22 78.4 0.0 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus DUF630 PF04783.12 CQR52367.1 - 0.14 12.3 0.1 0.28 11.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF630) SAICAR_synt PF01259.18 CQR52368.1 - 1.4e-85 287.0 0.0 1.6e-85 286.7 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 CQR52369.1 - 9.8e-34 115.4 0.1 1.1e-33 115.2 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 CQR52370.1 - 5e-42 143.8 0.0 9.3e-42 142.9 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 CQR52370.1 - 5.9e-08 32.7 0.0 1e-07 31.9 0.0 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 CQR52370.1 - 8.4e-07 28.8 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 CQR52370.1 - 1.7e-06 27.9 0.0 3.1e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 CQR52370.1 - 0.029 14.1 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 Peptidase C26 AIRS_C PF02769.22 CQR52371.1 - 3.6e-59 199.4 4.6 2.3e-35 122.0 0.1 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 CQR52371.1 - 1.6e-53 179.3 2.1 6.6e-26 90.8 0.2 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 CQR52371.1 - 9.7e-16 58.0 0.0 2.1e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_7 PF13537.6 CQR52372.1 - 2.7e-25 88.7 0.0 4.7e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 CQR52372.1 - 1.1e-21 77.4 0.0 2.1e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 CQR52372.1 - 1.2e-07 31.4 0.1 2.1e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 CQR52372.1 - 0.00025 20.0 0.0 0.00046 19.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II AIRS_C PF02769.22 CQR52373.1 - 2.2e-37 128.6 0.0 4e-37 127.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 CQR52373.1 - 1.2e-17 64.3 2.9 2.3e-17 63.4 1.9 2.0 1 1 1 2 2 2 1 AIR synthase related protein, N-terminal domain Formyl_trans_N PF00551.19 CQR52374.1 - 2e-52 177.5 0.0 2.3e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase AICARFT_IMPCHas PF01808.18 CQR52375.1 - 6.8e-121 403.3 3.5 8.4e-121 403.0 3.5 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 CQR52375.1 - 2.7e-26 91.6 0.0 7.3e-26 90.2 0.0 1.8 1 0 0 1 1 1 1 MGS-like domain Radical_SAM PF04055.21 CQR52375.1 - 0.033 14.6 0.2 21 5.4 0.0 3.9 4 1 0 4 4 4 0 Radical SAM superfamily GARS_A PF01071.19 CQR52376.1 - 1e-79 266.8 0.0 1.8e-79 266.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 CQR52376.1 - 2.3e-34 118.0 0.0 4.6e-34 117.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 CQR52376.1 - 2.1e-29 101.6 0.1 4.3e-29 100.6 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain CPSase_L_D2 PF02786.17 CQR52376.1 - 5.8e-05 22.7 0.1 9.9e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 CQR52376.1 - 9.4e-05 22.1 0.0 0.00028 20.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 CQR52376.1 - 0.00017 21.7 0.0 0.00028 21.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 CQR52376.1 - 0.00068 19.2 0.1 0.0027 17.3 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 CQR52376.1 - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus SEC-C PF02810.15 CQR52377.1 - 2e-10 40.4 9.7 3.6e-10 39.5 9.7 1.5 1 0 0 1 1 1 1 SEC-C motif ST7 PF04184.12 CQR52377.1 - 1.5e-07 30.3 1.1 5.8e-05 21.8 1.0 2.4 1 1 0 1 1 1 1 ST7 protein TPR_19 PF14559.6 CQR52377.1 - 1.9e-07 31.5 16.1 4.7e-07 30.2 3.8 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 CQR52377.1 - 5.8e-05 23.6 12.3 0.23 12.4 1.5 4.9 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 CQR52377.1 - 0.00027 21.1 1.4 1.4 9.5 0.3 3.1 2 0 0 2 2 2 2 Tetratricopeptide repeat HTH_psq PF05225.16 CQR52377.1 - 0.00099 18.8 0.3 0.0046 16.7 0.0 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain ANAPC3 PF12895.7 CQR52377.1 - 0.0038 17.4 1.6 0.0038 17.4 1.6 2.3 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 HTH_11 PF08279.12 CQR52377.1 - 0.0049 16.8 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain TPR_4 PF07721.14 CQR52377.1 - 0.0061 17.1 0.1 14 6.7 0.0 3.6 3 0 0 3 3 2 0 Tetratricopeptide repeat Trp_repressor PF01371.19 CQR52377.1 - 0.014 15.5 0.8 0.12 12.5 0.0 2.7 2 1 1 3 3 3 0 Trp repressor protein TPR_12 PF13424.6 CQR52377.1 - 0.034 14.4 8.8 0.2 11.9 2.1 3.3 3 2 0 3 3 3 0 Tetratricopeptide repeat DUF3966 PF13110.6 CQR52377.1 - 0.068 13.1 0.1 40 4.2 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3966) TPR_8 PF13181.6 CQR52377.1 - 0.64 10.4 10.3 8.6 6.9 0.7 5.1 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF2786 PF10979.8 CQR52377.1 - 4.7 7.2 9.0 0.43 10.5 0.3 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2786) MarR PF01047.22 CQR52378.1 - 1.3e-08 34.6 0.2 2.5e-08 33.7 0.2 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR52378.1 - 4.4e-08 32.9 0.0 6.7e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 CQR52378.1 - 7.8e-06 26.0 0.1 1.5e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 CQR52378.1 - 0.00057 20.3 0.1 0.00084 19.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_47 PF16221.5 CQR52378.1 - 0.0007 19.1 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 winged helix-turn-helix SgrR_N PF12793.7 CQR52378.1 - 0.0021 18.3 0.0 0.0036 17.5 0.0 1.4 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term TrmB PF01978.19 CQR52378.1 - 0.014 15.2 0.1 0.047 13.6 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 CQR52378.1 - 0.041 13.4 0.1 0.091 12.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 CQR52378.1 - 0.05 14.0 0.2 0.095 13.1 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator MqsR_toxin PF15723.5 CQR52378.1 - 0.056 13.8 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Motility quorum-sensing regulator, toxin of MqsA AF2331-like PF14556.6 CQR52378.1 - 0.077 13.6 0.2 0.18 12.4 0.2 1.7 2 0 0 2 2 2 0 AF2331-like HTH_Crp_2 PF13545.6 CQR52378.1 - 0.081 12.9 0.0 0.56 10.2 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain BAAT_C PF08840.11 CQR52379.1 - 1.4e-37 129.7 0.0 2.4e-37 128.9 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.14 CQR52379.1 - 7.9e-23 80.9 0.0 2.5e-22 79.3 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region Peptidase_S9 PF00326.21 CQR52379.1 - 0.00014 21.4 0.0 0.3 10.5 0.0 2.6 2 1 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 CQR52379.1 - 0.00031 20.5 0.0 0.0012 18.6 0.0 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 CQR52379.1 - 0.0088 15.6 0.0 8.4 5.9 0.0 3.1 2 1 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.8 CQR52379.1 - 0.018 14.3 0.0 0.21 10.8 0.0 2.4 2 1 0 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 CQR52379.1 - 0.14 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 alpha/beta hydrolase fold HTH_31 PF13560.6 CQR52380.1 - 0.0021 18.4 0.0 0.014 15.7 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TPR_16 PF13432.6 CQR52380.1 - 0.016 15.9 7.1 2 9.2 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat UPF0175 PF03683.13 CQR52380.1 - 0.033 13.9 2.6 14 5.5 0.0 3.9 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0175) TPR_7 PF13176.6 CQR52380.1 - 0.046 13.8 4.9 0.99 9.6 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 CQR52380.1 - 0.058 13.7 6.9 17 5.8 0.1 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat HTH_26 PF13443.6 CQR52380.1 - 0.062 13.7 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR52380.1 - 0.093 12.8 0.0 0.68 10.0 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix ANAPC3 PF12895.7 CQR52380.1 - 0.19 12.0 1.9 0.43 10.8 0.6 2.3 3 0 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 CQR52380.1 - 2.4 8.2 5.8 0.99 9.4 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat SpoOE-like PF09388.10 CQR52382.1 - 2.5e-11 43.3 1.9 1.4e-10 40.9 1.6 2.0 2 0 0 2 2 2 1 Spo0E like sporulation regulatory protein MCPsignal PF00015.21 CQR52383.1 - 1.9e-31 109.2 31.5 2.2e-29 102.4 10.5 3.7 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR52383.1 - 2.7e-30 106.0 3.6 2.7e-30 106.0 3.6 2.5 3 0 0 3 3 3 1 Cache domain Cache_3-Cache_2 PF17201.4 CQR52383.1 - 5.3e-11 42.3 0.2 1.6e-10 40.8 0.2 1.8 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 CQR52383.1 - 3.6e-08 33.6 0.1 3.6e-08 33.6 0.1 4.2 5 0 0 5 5 4 1 HAMP domain dCache_2 PF08269.11 CQR52383.1 - 5.5e-05 22.5 1.5 0.00057 19.2 0.0 2.4 2 0 0 2 2 2 1 Cache domain sCache_3_2 PF17203.4 CQR52383.1 - 0.0013 18.9 3.6 0.094 12.8 0.1 3.5 3 1 1 4 4 3 1 Single cache domain 3 DUF1664 PF07889.12 CQR52383.1 - 0.0087 16.1 5.2 0.084 12.9 0.3 3.5 2 1 1 3 3 3 1 Protein of unknown function (DUF1664) sCache_2 PF17200.4 CQR52383.1 - 0.0092 15.8 0.2 0.05 13.5 0.0 2.2 2 0 0 2 2 2 1 Single Cache domain 2 DUF948 PF06103.11 CQR52383.1 - 0.03 14.6 14.5 6.2 7.2 0.3 6.3 3 2 4 7 7 7 0 Bacterial protein of unknown function (DUF948) Apolipoprotein PF01442.18 CQR52383.1 - 0.045 13.6 16.7 0.23 11.3 1.5 2.8 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain Sec34 PF04136.15 CQR52383.1 - 0.063 13.2 1.4 9.6 6.1 0.0 3.4 2 2 1 3 3 3 0 Sec34-like family NPV_P10 PF05531.12 CQR52383.1 - 0.07 13.6 0.3 0.79 10.2 0.1 2.8 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 CQR52383.1 - 0.14 12.2 18.4 0.042 13.9 6.2 3.7 3 1 1 4 4 4 0 Laminin Domain II HR1 PF02185.16 CQR52383.1 - 0.14 12.3 7.2 1.3 9.2 0.0 3.2 3 0 0 3 3 2 0 Hr1 repeat AIP3 PF03915.13 CQR52383.1 - 0.14 11.2 5.2 2.7 7.0 5.2 2.1 1 1 0 1 1 1 0 Actin interacting protein 3 Snapin_Pallidin PF14712.6 CQR52383.1 - 0.16 12.4 0.4 4.2 7.9 0.0 3.2 2 1 1 3 3 3 0 Snapin/Pallidin Mce4_CUP1 PF11887.8 CQR52383.1 - 0.19 11.2 2.8 2.3 7.6 0.1 2.9 2 1 1 4 4 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Laminin_I PF06008.14 CQR52383.1 - 0.42 10.3 14.5 0.18 11.5 1.3 3.4 1 1 3 4 4 4 0 Laminin Domain I GldM_N PF12081.8 CQR52383.1 - 0.61 10.1 5.6 7.6 6.6 0.0 3.1 2 1 1 3 3 3 0 GldM N-terminal domain TMPIT PF07851.13 CQR52383.1 - 0.96 8.6 4.7 5.5 6.1 0.3 2.4 2 0 0 2 2 2 0 TMPIT-like protein zf-C4H2 PF10146.9 CQR52383.1 - 1.7 8.9 3.7 2.4 8.4 1.3 2.0 1 1 0 2 2 2 0 Zinc finger-containing protein Orf78 PF06024.12 CQR52383.1 - 3.5 8.0 4.7 27 5.2 0.3 2.6 2 0 0 2 2 2 0 Orf78 (ac78) Sec20 PF03908.13 CQR52383.1 - 6.9 6.7 10.3 9.9 6.2 0.2 4.8 4 1 1 5 5 5 0 Sec20 ERM PF00769.19 CQR52383.1 - 6.9 6.4 14.8 24 4.6 0.2 2.3 1 1 1 2 2 2 0 Ezrin/radixin/moesin family PALP PF00291.25 CQR52384.1 - 1.1e-77 261.3 0.4 1.4e-77 261.1 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_dehydrat_C PF00585.18 CQR52384.1 - 2.6e-28 97.6 0.0 4.4e-28 96.9 0.0 1.4 1 0 0 1 1 1 1 C-terminal regulatory domain of Threonine dehydratase DUF2121 PF09894.9 CQR52385.1 - 0.095 12.2 0.1 0.2 11.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2121) DUF1129 PF06570.11 CQR52386.1 - 5.6e-15 55.4 0.1 7e-15 55.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) TrbC PF04956.13 CQR52386.1 - 0.014 15.6 0.9 0.014 15.6 0.9 2.1 2 1 0 2 2 2 0 TrbC/VIRB2 family DUF1048 PF06304.11 CQR52386.1 - 0.096 13.1 0.0 0.18 12.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1048) Hydrolase_4 PF12146.8 CQR52388.1 - 4.5e-14 52.3 0.1 1.5e-12 47.3 0.1 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR52388.1 - 4.5e-12 46.2 0.6 4.9e-10 39.5 0.3 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR52388.1 - 7.4e-10 39.8 0.2 1.8e-09 38.6 0.2 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 CQR52388.1 - 1e-08 35.0 0.3 2.2e-08 33.8 0.3 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.12 CQR52388.1 - 1.3e-06 27.4 0.0 1.7e-05 23.7 0.0 2.0 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) PAF-AH_p_II PF03403.13 CQR52388.1 - 3.8e-06 25.7 0.0 0.011 14.3 0.0 2.2 2 0 0 2 2 2 2 Platelet-activating factor acetylhydrolase, isoform II DLH PF01738.18 CQR52388.1 - 8.8e-06 25.4 0.3 0.00037 20.1 0.3 2.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Lipase_3 PF01764.25 CQR52388.1 - 8e-05 22.5 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_5 PF12695.7 CQR52388.1 - 0.00015 21.6 0.0 0.063 13.0 0.0 2.8 3 0 0 3 3 3 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 CQR52388.1 - 0.00021 21.0 0.3 0.0012 18.5 0.0 2.1 2 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) PGAP1 PF07819.13 CQR52388.1 - 0.00028 20.7 0.3 0.00099 18.9 0.0 1.9 2 0 0 2 2 2 1 PGAP1-like protein Abhydrolase_3 PF07859.13 CQR52388.1 - 0.00054 19.9 0.0 0.00082 19.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 CQR52388.1 - 0.00061 19.7 0.0 0.07 12.9 0.0 2.1 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase LIP PF03583.14 CQR52388.1 - 0.001 18.5 0.5 0.02 14.3 0.3 2.1 2 0 0 2 2 2 1 Secretory lipase DUF676 PF05057.14 CQR52388.1 - 0.004 16.7 0.0 0.0065 16.0 0.0 1.2 1 0 0 1 1 1 1 Putative serine esterase (DUF676) UPF0227 PF05728.12 CQR52388.1 - 0.013 15.4 0.0 0.034 14.1 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0227) BAAT_C PF08840.11 CQR52388.1 - 0.019 14.9 0.0 0.049 13.5 0.0 1.8 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.20 CQR52388.1 - 0.05 13.2 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Putative esterase Lipase PF00151.19 CQR52388.1 - 0.069 12.4 0.0 0.098 11.9 0.0 1.2 1 0 0 1 1 1 0 Lipase COesterase PF00135.28 CQR52388.1 - 0.094 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Carboxylesterase family LigB PF02900.18 CQR52389.1 - 6.4e-39 133.7 0.0 7.9e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase DUF3048 PF11258.8 CQR52390.1 - 9.5e-47 158.8 0.0 1.5e-46 158.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3048) N-terminal domain DUF3048_C PF17479.2 CQR52390.1 - 1.5e-22 80.1 0.0 2.7e-22 79.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3048) C-terminal domain PhoU_div PF01865.16 CQR52391.1 - 6.9e-20 71.3 8.2 8.3e-20 71.0 8.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 DUF885 PF05960.11 CQR52391.1 - 0.011 15.5 0.1 0.011 15.5 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DUF3322 PF11795.8 CQR52391.1 - 0.025 14.6 0.0 0.59 10.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) DUF4456 PF14644.6 CQR52391.1 - 0.039 13.7 0.9 0.66 9.6 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4456) DASH_Dad2 PF08654.10 CQR52391.1 - 0.077 13.4 0.2 0.68 10.4 0.0 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad2 Cytochrom_B562 PF07361.11 CQR52391.1 - 0.088 13.5 0.5 2.8 8.6 0.0 2.3 1 1 1 2 2 2 0 Cytochrome b562 ArAE_1_C PF11728.8 CQR52391.1 - 0.18 11.8 4.6 0.35 10.8 0.2 2.7 2 1 1 3 3 3 0 Putative aromatic acid exporter C-terminal domain PHO4 PF01384.20 CQR52393.1 - 1.4e-91 307.0 36.8 5.3e-91 305.2 36.8 1.7 1 1 0 1 1 1 1 Phosphate transporter family HemY_N PF07219.13 CQR52393.1 - 0.16 12.2 3.2 8.2 6.7 0.0 3.4 3 0 0 3 3 3 0 HemY protein N-terminus ABC_tran PF00005.27 CQR52395.1 - 3.2e-36 124.9 0.1 4.4e-36 124.4 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52395.1 - 3e-11 43.7 0.0 2.4e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR52395.1 - 3.5e-09 36.4 0.1 5e-08 32.7 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 CQR52395.1 - 9e-06 24.7 0.0 0.1 11.3 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 CQR52395.1 - 3.4e-05 23.7 0.0 0.026 14.3 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 CQR52395.1 - 4.8e-05 23.0 0.0 9.1e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR52395.1 - 5.7e-05 22.9 0.2 0.00012 21.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR52395.1 - 8.7e-05 23.0 0.1 0.00012 22.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 CQR52395.1 - 0.00014 20.7 0.0 0.024 13.3 0.0 2.0 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.6 CQR52395.1 - 0.00028 21.4 0.0 0.00043 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.9 CQR52395.1 - 0.0011 18.2 0.5 0.064 12.4 0.0 2.1 1 1 1 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 RsgA_GTPase PF03193.16 CQR52395.1 - 0.0013 18.7 0.0 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 CQR52395.1 - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR52395.1 - 0.0032 17.8 0.1 0.0072 16.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR52395.1 - 0.0048 16.5 0.0 0.025 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 CQR52395.1 - 0.0097 16.1 0.4 0.013 15.7 0.4 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 CQR52395.1 - 0.01 15.8 1.6 0.011 15.6 0.6 1.6 2 0 0 2 2 1 0 NTPase ATPase PF06745.13 CQR52395.1 - 0.017 14.5 0.1 0.033 13.5 0.1 1.5 1 0 0 1 1 1 0 KaiC SbcCD_C PF13558.6 CQR52395.1 - 0.019 15.2 0.3 0.3 11.4 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 CQR52395.1 - 0.019 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 CQR52395.1 - 0.021 14.7 0.2 0.058 13.3 0.0 1.9 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 CQR52395.1 - 0.032 14.8 0.0 0.066 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 CQR52395.1 - 0.033 13.3 0.1 0.055 12.5 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 CQR52395.1 - 0.08 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 CQR52395.1 - 0.084 12.1 0.1 0.14 11.3 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 CQR52395.1 - 0.097 12.3 0.2 0.23 11.0 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 CQR52395.1 - 0.11 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Mg_chelatase PF01078.21 CQR52395.1 - 0.11 11.8 0.0 0.3 10.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 CQR52395.1 - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 CQR52395.1 - 0.12 12.8 0.3 1.7 9.1 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 CQR52395.1 - 0.13 12.0 0.1 0.27 10.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR52395.1 - 0.15 11.8 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SBP_bac_3 PF00497.20 CQR52396.1 - 2.5e-59 200.4 1.9 3.1e-59 200.2 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 CQR52396.1 - 4.8e-09 36.4 0.1 6.9e-08 32.7 0.1 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site BPD_transp_1 PF00528.22 CQR52398.1 - 1.9e-20 73.4 12.1 2.7e-20 72.9 12.1 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52401.1 - 1.9e-16 60.4 15.3 1.9e-16 60.4 15.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Mid2 PF04478.12 CQR52401.1 - 1.7 8.5 5.4 5.4 6.9 0.1 2.6 2 0 0 2 2 2 0 Mid2 like cell wall stress sensor TMEM132D_C PF15706.5 CQR52401.1 - 2.7 7.8 4.7 1.1 9.1 1.2 2.1 2 0 0 2 2 2 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term DPM2 PF07297.12 CQR52401.1 - 3 8.2 12.8 1.9 8.8 0.4 3.8 4 1 1 5 5 5 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) HATPase_c PF02518.26 CQR52404.1 - 1.8e-15 57.4 0.0 4.1e-15 56.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR52404.1 - 0.00098 19.0 0.0 0.002 18.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 CQR52404.1 - 0.0053 16.6 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Herpes_gE PF02480.16 CQR52404.1 - 0.23 10.2 0.0 0.34 9.6 0.0 1.2 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E YcbB PF08664.10 CQR52406.1 - 3.1e-44 150.3 0.0 4.6e-44 149.7 0.0 1.3 1 0 0 1 1 1 1 YcbB domain Response_reg PF00072.24 CQR52406.1 - 8.8e-21 74.2 0.1 1.7e-20 73.2 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain CorA PF01544.18 CQR52407.1 - 8.9e-73 245.1 1.6 1e-72 245.0 1.6 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Trp_repressor PF01371.19 CQR52412.1 - 9.1e-34 115.5 0.0 1e-33 115.3 0.0 1.0 1 0 0 1 1 1 1 Trp repressor protein HTH_38 PF13936.6 CQR52412.1 - 0.0038 17.0 0.1 0.021 14.6 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 CQR52412.1 - 0.043 13.9 0.3 0.17 11.9 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 CQR52412.1 - 0.064 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 CQR52412.1 - 0.12 12.0 0.5 0.19 11.3 0.1 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family CbiX PF01903.17 CQR52413.1 - 3.5e-28 98.0 0.0 1.3e-17 64.0 0.0 2.1 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 CQR52413.1 - 0.0065 15.8 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) DAGK_cat PF00781.24 CQR52415.1 - 2.7e-34 117.5 0.0 4.7e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 CQR52415.1 - 0.0024 17.1 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase tRNA_U5-meth_tr PF05958.11 CQR52417.1 - 1.7e-22 79.9 0.0 1.3e-21 77.0 0.0 1.9 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.6 CQR52417.1 - 6.3e-13 48.8 0.0 1.1e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRAM PF01938.20 CQR52417.1 - 1.8e-10 40.6 0.1 4.9e-10 39.2 0.1 1.8 1 0 0 1 1 1 1 TRAM domain Methyltransf_25 PF13649.6 CQR52417.1 - 5.4e-08 33.4 0.0 1.3e-07 32.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 CQR52417.1 - 2.6e-06 27.3 0.2 7.9e-06 25.7 0.2 1.9 1 1 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 CQR52417.1 - 3.2e-06 26.8 0.0 5.4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 CQR52417.1 - 4.6e-06 26.3 0.0 8.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 CQR52417.1 - 1.3e-05 24.8 0.2 1.9e-05 24.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 CQR52417.1 - 6.2e-05 23.6 0.0 0.00023 21.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 CQR52417.1 - 0.00054 19.7 0.0 0.0009 18.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 CQR52417.1 - 0.0042 16.9 0.0 0.0085 15.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 CQR52417.1 - 0.0055 16.7 0.0 0.0099 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 CQR52417.1 - 0.019 14.7 0.3 0.28 10.8 0.3 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 CQR52417.1 - 0.02 14.3 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 CQR52417.1 - 0.033 14.9 0.0 0.078 13.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 CQR52417.1 - 0.064 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 CQR52417.1 - 0.086 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 DNA methylase TPMT PF05724.11 CQR52417.1 - 0.17 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) RES PF08808.11 CQR52424.1 - 6.7e-15 55.3 0.0 9.8e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 RES domain Mrr_cat PF04471.12 CQR52425.1 - 1.7e-18 66.7 0.0 2.5e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 CQR52425.1 - 2.4e-06 27.5 0.0 4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease TIR_2 PF13676.6 CQR52431.1 - 5.7e-17 62.4 0.1 2.7e-16 60.2 0.0 1.9 2 0 0 2 2 2 1 TIR domain TIR PF01582.20 CQR52431.1 - 2.9e-05 24.0 0.1 9.1e-05 22.3 0.1 1.8 2 0 0 2 2 2 1 TIR domain GRIP PF01465.20 CQR52431.1 - 0.045 13.7 0.0 0.64 10.0 0.0 2.8 4 0 0 4 4 4 0 GRIP domain Recombinase PF07508.13 CQR52435.1 - 3.6e-13 49.8 0.1 9e-13 48.5 0.1 1.6 1 0 0 1 1 1 1 Recombinase Zn_ribbon_recom PF13408.6 CQR52435.1 - 5.2e-09 36.5 5.7 1.3e-08 35.2 5.7 1.7 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain DUF4368 PF14287.6 CQR52435.1 - 0.0014 18.9 0.1 0.0035 17.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4368) adh_short_C2 PF13561.6 CQR52437.1 - 8.6e-52 176.0 0.0 1.2e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR52437.1 - 7.4e-43 146.3 0.0 9.4e-43 145.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR52437.1 - 7.7e-06 25.9 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR52437.1 - 0.0059 16.1 0.0 0.012 15.1 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 CQR52437.1 - 0.14 11.5 0.0 3.8 6.8 0.0 2.0 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) AraC_N PF06719.13 CQR52440.1 - 5.2e-32 110.5 0.0 6.9e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus HTH_18 PF12833.7 CQR52440.1 - 5.7e-19 68.2 1.3 9.9e-19 67.4 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52440.1 - 9.7e-14 51.1 0.4 3.2e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR52440.1 - 0.0097 15.8 0.0 0.054 13.4 0.0 2.0 2 0 0 2 2 2 1 AraC-like ligand binding domain DUF627 PF04781.12 CQR52445.1 - 0.044 13.8 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF627) HATPase_c_3 PF13589.6 CQR52447.1 - 3e-10 40.1 0.0 5e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HSP90 PF00183.18 CQR52447.1 - 1e-06 28.0 0.0 6.9e-06 25.2 0.0 2.1 3 0 0 3 3 3 1 Hsp90 protein HATPase_c PF02518.26 CQR52447.1 - 2.9e-06 27.8 0.0 5.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Beta-lactamase PF00144.24 CQR52450.1 - 5.1e-63 213.3 0.0 6.6e-63 213.0 0.0 1.0 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 CQR52450.1 - 0.035 13.7 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Beta-lactamase enzyme family Chordopox_A13L PF05961.11 CQR52450.1 - 0.037 14.3 2.1 0.051 13.8 0.1 2.2 2 0 0 2 2 2 0 Chordopoxvirus A13L protein DUF1003 PF06210.11 CQR52450.1 - 2.7 8.1 4.9 1.2 9.2 1.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) Beta_helix PF13229.6 CQR52452.1 - 1.2e-15 57.7 49.0 2.3e-14 53.5 22.9 3.4 2 1 1 3 3 3 2 Right handed beta helix region DUF1565 PF07602.11 CQR52452.1 - 0.003 16.9 1.9 0.003 16.9 1.9 3.9 2 2 2 4 4 4 2 Protein of unknown function (DUF1565) PAF-AH_p_II PF03403.13 CQR52454.1 - 3.3e-18 65.4 0.2 8.1e-16 57.5 0.3 3.0 1 1 1 2 2 2 1 Platelet-activating factor acetylhydrolase, isoform II Chlorophyllase2 PF12740.7 CQR52454.1 - 3e-09 36.2 0.0 1.2e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 CQR52454.1 - 8.2e-06 25.1 0.0 0.003 16.6 0.0 2.2 2 0 0 2 2 2 2 Chlorophyllase DLH PF01738.18 CQR52454.1 - 1.3e-05 24.9 0.0 5.8e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 CQR52454.1 - 0.00043 19.6 0.0 0.016 14.5 0.0 2.3 2 0 0 2 2 2 1 Serine aminopeptidase, S33 AXE1 PF05448.12 CQR52454.1 - 0.00093 18.0 0.1 0.17 10.6 0.0 2.3 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_5 PF12695.7 CQR52454.1 - 0.0014 18.4 0.0 0.092 12.5 0.0 2.3 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 CQR52454.1 - 0.0017 18.1 0.2 0.004 16.8 0.2 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 CQR52454.1 - 0.0017 18.3 0.0 0.0043 17.0 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal PGAP1 PF07819.13 CQR52454.1 - 0.0026 17.5 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 PGAP1-like protein Peptidase_S9 PF00326.21 CQR52454.1 - 0.0029 17.1 0.0 0.0079 15.7 0.0 1.7 2 0 0 2 2 2 1 Prolyl oligopeptidase family CTP_transf_1 PF01148.20 CQR52454.1 - 0.0066 16.2 2.6 0.011 15.5 2.6 1.3 1 0 0 1 1 1 1 Cytidylyltransferase family Esterase PF00756.20 CQR52454.1 - 0.008 15.9 0.1 0.073 12.7 0.1 2.0 1 1 0 1 1 1 1 Putative esterase Abhydrolase_6 PF12697.7 CQR52454.1 - 0.023 15.3 0.0 0.043 14.4 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family Lipase_3 PF01764.25 CQR52454.1 - 0.027 14.3 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) DUF981 PF06168.11 CQR52454.1 - 0.032 14.2 4.2 0.052 13.5 4.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF981) UPF0014 PF03649.13 CQR52454.1 - 0.83 8.9 7.8 1.3 8.3 7.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0014) DUF3021 PF11457.8 CQR52456.1 - 4.1e-09 36.8 9.4 5.8e-09 36.4 9.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3021) DUF5592 PF17332.2 CQR52456.1 - 0.48 11.0 8.0 2.8 8.5 1.2 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5592) MARVEL PF01284.23 CQR52456.1 - 2.2 8.3 12.4 6.3 6.8 12.2 1.7 1 1 1 2 2 2 0 Membrane-associating domain NMN_transporter PF04973.12 CQR52458.1 - 0.051 13.5 3.5 1.2 9.0 1.0 2.0 1 1 1 2 2 2 0 Nicotinamide mononucleotide transporter PA_decarbox PF05870.11 CQR52460.1 - 1.1e-80 268.8 2.6 1.3e-80 268.7 2.6 1.0 1 0 0 1 1 1 1 Phenolic acid decarboxylase (PAD) MoaF_C PF17409.2 CQR52460.1 - 0.0035 17.0 0.2 0.0047 16.6 0.2 1.2 1 0 0 1 1 1 1 MoaF C-terminal domain MoaF PF10703.9 CQR52460.1 - 0.0063 16.4 0.1 0.0093 15.9 0.1 1.2 1 0 0 1 1 1 1 MoaF N-terminal domain Rxt3 PF08642.10 CQR52460.1 - 0.11 13.3 0.1 0.12 13.1 0.1 1.3 1 0 0 1 1 1 0 Histone deacetylation protein Rxt3 NmrA PF05368.13 CQR52465.1 - 3.9e-20 72.4 0.0 5.3e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 CQR52465.1 - 6.3e-10 39.2 0.1 9.6e-10 38.7 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding LysR_substrate PF03466.20 CQR52466.1 - 2.8e-22 79.1 0.0 3.6e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR52466.1 - 1.2e-19 70.0 0.1 2e-19 69.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 CQR52466.1 - 0.0091 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 CQR52466.1 - 0.027 14.0 0.0 0.065 12.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding YtfJ_HI0045 PF09695.10 CQR52466.1 - 0.076 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (YtfJ_HI0045) FtsX PF02687.21 CQR52468.1 - 1.6e-18 67.0 15.7 1.8e-11 44.3 2.6 5.3 6 0 0 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 CQR52468.1 - 0.00056 20.3 3.4 0.0019 18.6 0.2 3.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain Sigma_reg_N PF13800.6 CQR52468.1 - 0.53 10.6 0.0 0.53 10.6 0.0 5.7 5 1 1 6 6 6 0 Sigma factor regulator N-terminal ABC_tran PF00005.27 CQR52471.1 - 9.5e-34 116.9 0.1 1.3e-33 116.4 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR52471.1 - 3.1e-10 39.9 0.7 5.3e-06 26.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR52471.1 - 3.7e-07 30.3 0.3 0.0097 15.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR52471.1 - 4.5e-05 23.1 0.4 8.2e-05 22.3 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR52471.1 - 0.00076 19.4 0.1 0.0015 18.4 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 CQR52471.1 - 0.0071 15.9 0.1 0.2 11.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 CQR52471.1 - 0.011 16.3 0.2 0.021 15.3 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR52471.1 - 0.012 15.3 0.5 0.03 14.0 0.2 1.6 1 1 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 CQR52471.1 - 0.042 14.2 0.2 0.044 14.2 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 CQR52471.1 - 0.046 13.4 0.1 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain His_Phos_2 PF00328.22 CQR52471.1 - 0.057 12.8 0.0 0.063 12.6 0.0 1.0 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) FtsK_SpoIIIE PF01580.18 CQR52471.1 - 0.1 12.0 0.2 0.27 10.5 0.1 1.8 2 1 1 3 3 3 0 FtsK/SpoIIIE family AAA_22 PF13401.6 CQR52471.1 - 0.13 12.5 1.6 0.27 11.5 0.4 1.9 2 0 0 2 2 2 0 AAA domain HATPase_c PF02518.26 CQR52473.1 - 4.7e-19 69.0 0.1 1.7e-18 67.1 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52473.1 - 4.4e-10 39.5 1.0 1e-09 38.3 1.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR52473.1 - 0.0003 20.6 0.0 0.00062 19.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR52473.1 - 0.007 16.3 0.0 0.045 13.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Baculo_PEP_C PF04513.12 CQR52473.1 - 0.01 15.8 0.8 0.023 14.7 0.8 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HATPase_c_5 PF14501.6 CQR52473.1 - 0.016 15.1 0.0 0.039 13.8 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Vip3A_N PF12495.8 CQR52473.1 - 0.061 13.2 0.4 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Vegetative insecticide protein 3A N terminal SLATT_1 PF18181.1 CQR52473.1 - 0.076 12.9 2.1 2.8 7.9 0.4 2.4 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Response_reg PF00072.24 CQR52475.1 - 1.2e-27 96.3 0.0 2.1e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR52475.1 - 5.2e-23 80.9 0.0 1e-22 80.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DUF3841 PF12952.7 CQR52480.1 - 3e-25 89.0 2.5 2e-24 86.4 2.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF3841) AAA_14 PF13173.6 CQR52482.1 - 1e-26 93.5 0.0 2.1e-26 92.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 CQR52482.1 - 3.4e-23 82.1 0.0 7.9e-23 80.9 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 CQR52482.1 - 6.9e-05 22.9 0.1 0.0027 17.7 0.1 2.3 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 CQR52482.1 - 0.0012 18.6 0.1 0.0029 17.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 CQR52482.1 - 0.015 15.5 0.0 0.069 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 CQR52482.1 - 0.11 12.9 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Dus PF01207.17 CQR52486.1 - 7.3e-07 28.6 0.0 7.5e-07 28.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) HisKA PF00512.25 CQR52488.1 - 3.9e-12 46.0 0.2 7.4e-12 45.1 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 CQR52488.1 - 6.4e-10 39.5 0.0 1.3e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR52488.1 - 0.00033 20.6 0.5 0.00062 19.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain RebB PF11747.8 CQR52488.1 - 0.17 12.0 0.8 2.2 8.4 0.2 2.5 2 0 0 2 2 2 0 Killing trait Response_reg PF00072.24 CQR52491.1 - 1.2e-24 86.6 0.1 1.8e-24 86.1 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR52491.1 - 3.2e-19 68.8 0.0 7.5e-19 67.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal ABC2_membrane_4 PF12730.7 CQR52493.1 - 0.00091 19.2 15.4 0.00091 19.2 15.4 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR52495.1 - 1.5e-05 25.1 14.7 1.5e-05 25.1 14.7 2.4 1 1 2 3 3 3 1 ABC-2 family transporter protein DUF5345 PF17280.2 CQR52495.1 - 0.0083 16.1 1.8 0.0083 16.1 1.8 3.2 4 0 0 4 4 4 1 Family of unknown function (DUF5345) S_4TM PF18159.1 CQR52495.1 - 0.027 13.8 0.3 0.027 13.8 0.3 2.5 2 1 1 3 3 3 0 SMODS-associating 4TM effector domain ABC_tran PF00005.27 CQR52497.1 - 1.3e-33 116.5 0.1 2.1e-33 115.8 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52497.1 - 3.6e-16 59.9 0.7 1e-09 38.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR52497.1 - 7.9e-05 22.3 0.1 0.00015 21.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR52497.1 - 0.0002 21.6 0.2 0.0011 19.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR52497.1 - 0.00032 20.2 0.7 0.12 11.8 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR52497.1 - 0.00085 19.1 0.0 0.0015 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR52497.1 - 0.00086 19.2 0.2 0.0049 16.8 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 CQR52497.1 - 0.0014 19.2 0.2 0.0031 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR52497.1 - 0.0015 18.3 0.3 0.13 11.9 0.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 CQR52497.1 - 0.036 14.1 0.0 0.073 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 CQR52497.1 - 0.078 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 CQR52497.1 - 0.097 12.7 0.0 5.3 7.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 CQR52497.1 - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR52497.1 - 0.13 12.3 0.2 0.21 11.7 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.15 CQR52497.1 - 0.14 12.1 0.5 0.59 10.0 0.5 2.1 1 1 0 1 1 1 0 Rad17 P-loop domain SLH PF00395.20 CQR52499.1 - 5.1e-24 84.0 2.2 1.5e-07 31.3 0.3 3.9 3 0 0 3 3 3 3 S-layer homology domain Glyco_hydro_10 PF00331.20 CQR52499.1 - 3.7e-16 59.2 0.1 7.5e-08 31.9 0.0 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 10 Cadherin-like PF12733.7 CQR52499.1 - 7.3e-14 52.1 4.8 7.3e-14 52.1 4.8 3.2 3 1 0 3 3 3 1 Cadherin-like beta sandwich domain BiPBP_C PF06832.12 CQR52499.1 - 0.0099 15.9 0.0 0.055 13.5 0.0 2.4 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family LEA_2 PF03168.13 CQR52499.1 - 0.069 13.7 0.8 0.49 11.0 0.2 2.9 2 1 1 3 3 3 0 Late embryogenesis abundant protein Dus PF01207.17 CQR52501.1 - 1.4e-46 159.0 0.0 1.8e-46 158.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) MazE_antitoxin PF04014.18 CQR52503.1 - 2.2e-14 53.0 0.1 3.4e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PemK_toxin PF02452.17 CQR52505.1 - 7.1e-22 77.9 0.0 7.9e-22 77.8 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system Inhibitor_I36 PF03995.13 CQR52510.1 - 5.7e-05 23.0 4.2 0.0006 19.7 0.7 2.8 1 1 0 2 2 2 1 Peptidase inhibitor family I36 Crystall_3 PF08964.10 CQR52510.1 - 0.00015 21.9 0.8 0.19 11.9 0.2 2.5 1 1 1 2 2 2 2 Beta/Gamma crystallin SLT PF01464.20 CQR52510.1 - 0.00024 20.7 0.0 0.00044 19.9 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain Crystall PF00030.19 CQR52510.1 - 0.00033 20.8 0.0 0.068 13.4 0.1 2.2 1 1 0 1 1 1 1 Beta/Gamma crystallin His_kinase PF06580.13 CQR52512.1 - 3.1e-21 75.5 2.5 1e-20 73.8 2.5 1.9 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR52512.1 - 1e-17 64.8 0.6 1e-17 64.8 0.6 2.1 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR52512.1 - 1.1e-13 51.3 0.1 2.6e-13 50.1 0.1 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR52512.1 - 6.4e-06 26.7 0.0 2.1e-05 25.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4834 PF16118.5 CQR52512.1 - 0.13 13.2 2.5 0.17 12.9 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) Sigma_reg_N PF13800.6 CQR52512.1 - 0.28 11.5 5.6 3.3 8.1 1.7 2.5 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Response_reg PF00072.24 CQR52514.1 - 5.5e-31 107.0 0.2 8.5e-31 106.4 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR52514.1 - 1.4e-18 66.5 0.5 8.2e-10 38.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR52514.1 - 9e-18 64.3 0.1 2.7e-17 62.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain BRCT_3 PF18428.1 CQR52514.1 - 0.15 12.1 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain SBP_bac_8 PF13416.6 CQR52516.1 - 4e-28 99.0 8.3 6.2e-28 98.4 8.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR52516.1 - 3.6e-23 83.0 10.3 5.7e-23 82.4 10.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAFH PF07531.14 CQR52516.1 - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 NHR1 homology to TAF DUF1707 PF08044.11 CQR52516.1 - 0.65 10.1 2.7 1.5 8.9 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) BPD_transp_1 PF00528.22 CQR52517.1 - 1.5e-20 73.8 10.1 1.5e-20 73.8 10.1 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SpecificRecomb PF10136.9 CQR52517.1 - 0.088 11.1 1.6 0.12 10.7 1.6 1.2 1 0 0 1 1 1 0 Site-specific recombinase BPD_transp_1 PF00528.22 CQR52519.1 - 3.3e-21 75.8 16.5 3.3e-21 75.8 16.5 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3290 PF11694.8 CQR52519.1 - 1.4 8.9 8.1 0.23 11.4 3.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) 5_nucleotid_C PF02872.18 CQR52521.1 - 1.2e-30 106.8 0.5 3.2e-30 105.4 0.2 1.8 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 CQR52521.1 - 2.6e-10 41.1 0.0 4.3e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.10 CQR52521.1 - 7.1e-05 22.4 0.1 0.00018 21.1 0.1 1.6 1 1 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DUF1485 PF07364.12 CQR52521.1 - 0.0079 15.5 1.8 0.027 13.7 0.7 2.3 2 0 0 2 2 2 1 Metallopeptidase family M81 DUF2790 PF10976.8 CQR52521.1 - 0.013 15.5 0.1 0.087 12.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2790) DJ-1_PfpI PF01965.24 CQR52523.1 - 3.7e-30 104.9 0.0 4.3e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Mrr_cat PF04471.12 CQR52528.1 - 0.011 15.8 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Restriction endonuclease FeoB_Cyto PF17910.1 CQR52528.1 - 0.047 14.2 1.2 0.17 12.4 0.4 2.3 2 0 0 2 2 2 0 FeoB cytosolic helical domain SfsA PF03749.13 CQR52528.1 - 0.05 13.5 0.3 0.1 12.5 0.3 1.5 1 0 0 1 1 1 0 Sugar fermentation stimulation protein RE domain HNH_5 PF14279.6 CQR52529.1 - 1.4e-07 31.3 2.8 2.8e-07 30.3 2.8 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 CQR52529.1 - 3.8e-07 30.2 5.8 3.8e-07 30.2 5.8 1.8 2 0 0 2 2 2 1 HNH endonuclease HNH_4 PF13395.6 CQR52529.1 - 0.00087 19.1 0.1 0.002 18.0 0.0 1.6 2 0 0 2 2 2 1 HNH endonuclease DUF2024 PF09630.10 CQR52529.1 - 0.0084 16.0 0.0 0.073 12.9 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2024) HNH_2 PF13391.6 CQR52529.1 - 0.037 14.2 0.7 0.24 11.6 0.7 2.1 1 1 0 1 1 1 0 HNH endonuclease DZR PF12773.7 CQR52529.1 - 0.96 9.5 5.7 1.1 9.3 2.5 2.1 2 0 0 2 2 2 0 Double zinc ribbon Dus PF01207.17 CQR52535.1 - 2.2e-13 50.0 0.0 2.3e-13 49.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Dus PF01207.17 CQR52537.1 - 1.6e-06 27.4 0.0 1.6e-06 27.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Endonuclea_NS_2 PF13930.6 CQR52540.1 - 0.046 13.8 0.0 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 DNA/RNA non-specific endonuclease DUF4221 PF13970.6 CQR52540.1 - 0.093 12.3 0.0 0.096 12.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4221) DUF4200 PF13863.6 CQR52542.1 - 0.23 11.9 14.8 0.029 14.8 9.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) PACT_coil_coil PF10495.9 CQR52542.1 - 0.27 11.8 4.5 39 4.9 0.1 3.6 3 0 0 3 3 3 0 Pericentrin-AKAP-450 domain of centrosomal targeting protein Fib_alpha PF08702.10 CQR52542.1 - 1.5 9.0 10.1 0.63 10.2 6.8 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family AAA_5 PF07728.14 CQR52544.1 - 0.00028 20.9 0.0 0.00074 19.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 CQR52544.1 - 0.001 19.3 0.0 0.0025 18.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain PEPCK_ATP PF01293.20 CQR52544.1 - 0.02 13.5 0.0 0.033 12.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase DUF4327 PF14217.6 CQR52544.1 - 0.035 14.2 0.2 0.21 11.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4327) PhoH PF02562.16 CQR52544.1 - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_16 PF13191.6 CQR52544.1 - 0.12 12.8 0.0 0.32 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 CQR52544.1 - 0.5 10.8 6.6 6.1 7.3 0.1 3.1 2 1 1 3 3 3 0 AAA domain DUF2357 PF09823.9 CQR52546.1 - 0.0034 16.7 1.7 0.068 12.4 1.6 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF2357) HTH_3 PF01381.22 CQR52548.1 - 0.0016 18.5 0.1 0.0031 17.5 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR52548.1 - 0.0038 17.5 0.0 0.0046 17.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR52548.1 - 0.0052 17.2 0.0 0.0083 16.5 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 CQR52548.1 - 0.016 15.2 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 CQR52549.1 - 2.4e-14 52.8 0.1 4e-14 52.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 CQR52549.1 - 0.00051 20.1 0.0 0.00081 19.4 0.0 1.3 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain HTH_Tnp_1_2 PF13022.6 CQR52549.1 - 0.00058 20.0 0.2 0.0052 16.9 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 CQR52549.1 - 0.0087 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HAD_2 PF13419.6 CQR52549.1 - 0.028 14.5 0.1 0.045 13.8 0.1 1.5 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase ATP-grasp_2 PF08442.10 CQR52549.1 - 0.15 11.6 0.0 0.3 10.6 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain HTH_6 PF01418.17 CQR52549.1 - 0.18 11.8 1.3 11 6.1 0.0 3.1 2 2 1 3 3 3 0 Helix-turn-helix domain, rpiR family N6_Mtase PF02384.16 CQR52553.1 - 2.5e-11 43.4 1.1 3.7e-11 42.9 0.6 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 CQR52553.1 - 0.0015 19.0 0.0 0.0042 17.6 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 CQR52553.1 - 0.0021 17.8 0.0 0.0041 16.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 CQR52553.1 - 0.066 13.9 0.0 0.32 11.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain HATPase_c_3 PF13589.6 CQR52555.1 - 5.6e-26 91.0 1.5 8.6e-22 77.4 0.5 2.8 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 CQR52555.1 - 2.3e-17 63.5 1.8 1.3e-08 35.3 0.2 2.5 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Foamy_BEL PF03274.14 CQR52557.1 - 0.01 15.2 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein GLF PF03275.13 CQR52557.1 - 0.081 12.6 1.5 1.1 8.9 0.1 2.2 1 1 0 2 2 2 0 UDP-galactopyranose mutase HNH PF01844.23 CQR52559.1 - 8.1e-06 25.9 1.0 2.2e-05 24.5 1.0 1.8 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 CQR52559.1 - 3.1e-05 23.8 0.1 7.8e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 HNH endonuclease DUF761 PF05553.11 CQR52559.1 - 0.0009 18.7 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 Cotton fibre expressed protein HTH_3 PF01381.22 CQR52562.1 - 0.00024 21.1 0.1 0.00047 20.2 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR52562.1 - 0.00033 21.0 0.0 0.00042 20.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR52562.1 - 0.00058 20.3 0.0 0.00087 19.7 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 CQR52562.1 - 0.0006 19.8 0.0 0.00087 19.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain SpoOE-like PF09388.10 CQR52564.1 - 0.1 12.5 0.9 0.26 11.2 0.9 1.7 1 1 0 1 1 1 0 Spo0E like sporulation regulatory protein GAF_3 PF13492.6 CQR52564.1 - 0.12 12.7 0.1 0.23 11.8 0.1 1.4 1 0 0 1 1 1 0 GAF domain Tubulin_C PF03953.17 CQR52564.1 - 0.15 12.2 0.0 3.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Tubulin C-terminal domain NERD PF08378.11 CQR52566.1 - 1.2e-24 86.9 0.0 1.9e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 CQR52568.1 - 3e-24 85.3 0.0 5.4e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF3427 PF11907.8 CQR52570.1 - 7.9e-81 271.4 6.6 7.9e-81 271.4 6.6 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3427) ResIII PF04851.15 CQR52570.1 - 2.1e-32 112.5 0.6 1e-31 110.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.6 CQR52570.1 - 6.7e-14 51.9 0.1 1.6e-13 50.7 0.1 1.7 1 0 0 1 1 1 1 PLD-like domain Helicase_C PF00271.31 CQR52570.1 - 3.2e-13 50.0 0.1 1.8e-12 47.6 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain NUDIX PF00293.28 CQR52572.1 - 2.5e-16 59.9 0.0 2.9e-16 59.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 CQR52572.1 - 5.6e-11 42.4 0.0 6.6e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.6 CQR52572.1 - 0.0049 16.5 0.0 0.0064 16.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotide hydrolase Meth_synt_2 PF01717.18 CQR52576.1 - 0.00019 20.8 0.0 0.012 14.9 0.0 2.6 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Beta-lactamase PF00144.24 CQR52578.1 - 2.9e-67 227.3 0.1 4.8e-67 226.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase SLH PF00395.20 CQR52578.1 - 3.2e-10 39.8 0.3 0.0004 20.3 0.0 4.0 4 0 0 4 4 4 2 S-layer homology domain Beta-lactamase2 PF13354.6 CQR52578.1 - 0.014 15.0 0.0 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Beta-lactamase enzyme family TetR_N PF00440.23 CQR52582.1 - 8.8e-14 51.0 0.1 1.9e-13 49.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TatD_DNase PF01026.21 CQR52582.1 - 0.048 13.0 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase Amidohydro_1 PF01979.20 CQR52584.1 - 3.5e-39 135.1 0.7 4.7e-39 134.7 0.7 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR52584.1 - 2.7e-15 56.8 4.6 3.5e-09 36.7 0.4 2.5 2 1 0 2 2 2 2 Amidohydrolase family DUF1024 PF06260.12 CQR52584.1 - 0.089 13.1 0.5 0.59 10.5 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1024) Ribosomal_L12 PF00542.19 CQR52586.1 - 0.00088 19.6 1.6 0.0011 19.2 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein L7/L12 C-terminal domain DUF4317 PF14199.6 CQR52588.1 - 2e-102 343.1 12.1 2.2e-102 343.0 12.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4317) DEK_C PF08766.11 CQR52588.1 - 0.085 12.8 0.6 16 5.5 0.1 2.5 2 0 0 2 2 2 0 DEK C terminal domain Flavodoxin_2 PF02525.17 CQR52590.1 - 4.8e-42 143.9 0.0 5.8e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR52590.1 - 0.00031 20.5 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase HxlR PF01638.17 CQR52592.1 - 5e-34 116.0 0.4 6.1e-34 115.7 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 CQR52592.1 - 0.00011 22.0 0.2 0.00024 20.9 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 CQR52592.1 - 0.0011 18.9 0.1 0.0016 18.3 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.10 CQR52592.1 - 0.0022 17.9 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 CQR52592.1 - 0.063 13.3 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Response_reg PF00072.24 CQR52594.1 - 2.5e-26 92.0 0.1 6e-26 90.8 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52594.1 - 8.9e-19 67.5 0.3 2.9e-18 65.9 0.3 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52594.1 - 7.2e-18 64.2 0.7 2e-08 34.1 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DUF3760 PF12586.8 CQR52594.1 - 1.7 8.9 3.6 1.8 8.8 1.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3760) His_kinase PF06580.13 CQR52596.1 - 1.2e-21 76.8 0.9 1.2e-21 76.8 0.9 2.0 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR52596.1 - 3.1e-14 53.1 0.0 6.3e-14 52.1 0.0 1.5 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR52596.1 - 1.7e-13 50.9 0.4 5.3e-13 49.3 0.4 1.8 1 1 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR52596.1 - 0.0034 17.9 0.1 0.01 16.4 0.1 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MacB_PCD PF12704.7 CQR52596.1 - 0.09 13.1 0.1 0.38 11.1 0.0 2.1 3 0 0 3 3 3 0 MacB-like periplasmic core domain SBP_bac_1 PF01547.25 CQR52598.1 - 3.8e-35 122.3 8.2 3.8e-35 122.3 8.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR52598.1 - 2.6e-32 112.8 7.9 3.6e-32 112.3 7.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Trep_dent_lipo PF09710.10 CQR52598.1 - 0.18 10.7 0.0 0.29 10.0 0.0 1.2 1 0 0 1 1 1 0 Treponema clustered lipoprotein (Trep_dent_lipo) BPD_transp_1 PF00528.22 CQR52600.1 - 4e-16 59.3 18.7 4e-16 59.3 18.7 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52602.1 - 1.7e-17 63.7 16.6 1.7e-17 63.7 16.6 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_43 PF04616.14 CQR52604.1 - 6.7e-50 170.0 0.3 7.7e-50 169.8 0.3 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 DUF2510 PF10708.9 CQR52604.1 - 0.59 9.9 7.3 0.1 12.4 3.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2510) HTH_18 PF12833.7 CQR52606.1 - 5.5e-20 71.4 0.1 4.1e-19 68.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52606.1 - 1.1e-19 70.0 0.3 2.6e-08 33.7 0.1 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR52606.1 - 1.1e-05 25.4 0.3 3.6e-05 23.7 0.1 1.9 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR52606.1 - 0.0015 18.2 0.0 0.0035 17.0 0.0 1.5 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.22 CQR52606.1 - 0.0046 16.6 0.0 0.0073 15.9 0.0 1.4 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 CQR52606.1 - 0.063 13.0 0.0 0.099 12.4 0.0 1.5 1 1 0 1 1 1 0 Cupin STAS PF01740.21 CQR52606.1 - 0.12 12.0 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 STAS domain Glyco_hydro_88 PF07470.13 CQR52608.1 - 9.2e-75 251.8 7.1 1.1e-74 251.6 7.1 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 CQR52608.1 - 0.023 13.2 0.2 0.092 11.2 0.2 1.7 1 1 0 1 1 1 0 Beta-L-arabinofuranosidase, GH127 AAA_21 PF13304.6 CQR52612.1 - 1.6e-12 47.9 1.7 2e-05 24.5 0.6 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR52612.1 - 6.7e-11 42.5 1.2 6.2e-09 36.0 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 CQR52612.1 - 3.3e-09 36.5 0.8 0.00019 20.9 0.2 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR52612.1 - 1e-06 29.4 0.1 1.7e-06 28.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 CQR52612.1 - 0.0013 18.4 0.1 0.0023 17.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR52612.1 - 0.0089 15.7 0.1 0.019 14.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 CQR52612.1 - 0.032 14.8 0.1 0.14 12.7 0.1 2.0 2 0 0 2 2 2 0 ABC transporter HNH_5 PF14279.6 CQR52614.1 - 0.011 15.6 0.1 0.036 13.9 0.1 2.0 1 0 0 1 1 1 0 HNH endonuclease Imm70 PF15601.6 CQR52614.1 - 0.017 14.7 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 Immunity protein 70 NinG PF05766.12 CQR52614.1 - 0.06 13.3 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein HEAT_2 PF13646.6 CQR52616.1 - 3.4e-05 24.1 19.7 0.046 14.1 0.4 6.4 5 3 1 6 6 6 2 HEAT repeats HEAT PF02985.22 CQR52616.1 - 1.3 9.4 7.5 13 6.3 0.1 5.1 7 0 0 7 7 7 0 HEAT repeat Acetyltransf_10 PF13673.7 CQR52617.1 - 2.2e-18 66.4 0.0 2.4e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR52617.1 - 3.6e-14 53.0 0.1 4.2e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR52617.1 - 3.5e-11 43.3 0.1 4.7e-11 43.0 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 CQR52617.1 - 7.6e-08 32.2 0.0 1.7e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR52617.1 - 0.00047 20.2 0.0 0.00086 19.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 CQR52617.1 - 0.035 14.8 0.0 0.045 14.4 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR52617.1 - 0.057 13.6 0.0 0.088 12.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR52617.1 - 0.095 12.8 0.0 0.21 11.7 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 CQR52617.1 - 0.12 12.3 0.0 0.33 11.0 0.0 1.7 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase PanZ PF12568.8 CQR52617.1 - 0.12 12.1 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_15 PF17013.5 CQR52617.1 - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_18 PF18014.1 CQR52617.1 - 0.15 11.9 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ROK PF00480.20 CQR52620.1 - 2e-35 122.7 0.2 2.6e-35 122.3 0.2 1.1 1 0 0 1 1 1 1 ROK family HTH_24 PF13412.6 CQR52620.1 - 1.2e-07 31.2 0.3 2.5e-07 30.1 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 CQR52620.1 - 2.6e-06 27.4 0.0 5.9e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR52620.1 - 5.7e-06 26.1 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR52620.1 - 1.6e-05 24.7 0.1 3.6e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 CQR52620.1 - 4.6e-05 23.3 0.4 9.1e-05 22.3 0.4 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 CQR52620.1 - 9.1e-05 22.6 0.1 0.00032 20.8 0.1 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 CQR52620.1 - 0.0013 18.7 0.1 0.0044 17.0 0.1 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Mga PF05043.13 CQR52620.1 - 0.007 16.9 0.1 0.014 16.0 0.1 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_29 PF13551.6 CQR52620.1 - 0.014 15.4 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 CQR52620.1 - 0.016 15.0 0.0 0.056 13.3 0.0 1.9 1 1 0 1 1 1 0 Homeodomain-like domain HTH_1 PF00126.27 CQR52620.1 - 0.025 14.5 0.1 0.059 13.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.6 CQR52620.1 - 0.025 15.1 0.0 0.052 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 CQR52620.1 - 0.049 13.3 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_DeoR PF08220.12 CQR52620.1 - 0.057 13.2 1.0 0.088 12.6 0.3 1.7 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain UPF0122 PF04297.14 CQR52620.1 - 0.078 13.2 0.2 0.19 12.0 0.1 1.6 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 CQR52620.1 - 0.088 12.6 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain RPA_C PF08784.11 CQR52620.1 - 0.15 12.8 0.1 0.3 11.8 0.1 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_5 PF01022.20 CQR52620.1 - 0.16 11.9 0.0 1.5 8.7 0.0 2.4 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 CQR52620.1 - 0.16 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 CQR52620.1 - 0.18 11.9 0.2 0.44 10.6 0.2 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain ADH_N PF08240.12 CQR52621.1 - 1.2e-31 108.8 2.6 1.3e-31 108.7 0.9 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 CQR52621.1 - 2.4e-27 95.5 1.5 2.4e-27 95.5 0.5 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 CQR52621.1 - 1.5e-11 44.2 1.2 2.1e-11 43.7 1.2 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 CQR52621.1 - 9.4e-09 36.4 0.2 1.8e-08 35.5 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 CQR52621.1 - 0.0008 18.8 1.7 0.0013 18.1 1.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 CQR52621.1 - 0.0021 18.3 0.9 0.0039 17.4 0.9 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 CQR52621.1 - 0.0044 16.6 0.4 0.0076 15.8 0.4 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 CQR52621.1 - 0.013 15.8 0.5 0.029 14.6 0.5 1.6 1 0 0 1 1 1 0 TrkA-N domain DAO PF01266.24 CQR52621.1 - 0.018 14.6 0.4 0.024 14.2 0.4 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Hexapep PF00132.24 CQR52621.1 - 0.13 12.0 0.8 9.8 6.1 0.0 3.2 3 1 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Glyco_hydro_11 PF00457.17 CQR52624.1 - 4.6e-69 231.6 20.3 5.3e-69 231.4 20.3 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 11 DUF3693 PF12472.8 CQR52624.1 - 0.11 12.2 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Phage related protein RloB PF13707.6 CQR52626.1 - 2.8e-18 66.8 8.3 3.4e-18 66.5 8.3 1.1 1 0 0 1 1 1 1 RloB-like protein AAA_21 PF13304.6 CQR52628.1 - 4.5e-25 89.1 3.1 2.9e-14 53.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR52628.1 - 2.6e-06 27.4 13.5 0.0071 16.1 13.5 2.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 CQR52628.1 - 0.00011 21.7 6.0 0.034 13.6 0.1 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR52628.1 - 0.00013 22.5 1.1 0.00028 21.4 1.1 1.5 1 0 0 1 1 1 1 AAA domain CDP-OH_P_transf PF01066.21 CQR52630.1 - 3.6e-14 53.3 1.2 3.6e-14 53.3 1.2 2.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Pro_CA PF00484.19 CQR52630.1 - 0.14 12.5 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 Carbonic anhydrase Ndc1_Nup PF09531.10 CQR52630.1 - 1.6 7.4 9.0 1.7 7.2 9.0 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF1700 PF08006.11 CQR52630.1 - 7.4 6.1 9.9 19 4.7 9.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) Response_reg PF00072.24 CQR52631.1 - 1.2e-24 86.6 0.0 1.8e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR52631.1 - 7e-23 80.5 0.0 1.5e-22 79.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR52634.1 - 6.7e-17 62.0 0.0 1.1e-16 61.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52634.1 - 1.4e-06 28.2 0.0 3.4e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 CQR52634.1 - 6.4e-06 26.1 0.1 1e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR52634.1 - 7.6e-05 22.6 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trep_Strep PF09605.10 CQR52634.1 - 0.043 13.8 4.9 0.079 12.9 4.9 1.3 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) Y2_Tnp PF04986.13 CQR52636.1 - 2.7e-37 128.6 1.8 2.7e-37 128.6 1.8 2.1 2 0 0 2 2 2 1 Putative transposase Zn_Tnp_IS91 PF14319.6 CQR52636.1 - 5.6e-29 100.0 7.4 9.4e-29 99.3 3.7 2.5 2 0 0 2 2 2 1 Transposase zinc-binding domain MobA_MobL PF03389.15 CQR52636.1 - 0.016 14.9 0.2 0.042 13.6 0.1 1.7 1 1 0 1 1 1 0 MobA/MobL family DUF5638 PF18688.1 CQR52636.1 - 0.054 13.8 0.4 0.12 12.7 0.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5638) KH_9 PF17904.1 CQR52636.1 - 0.13 12.7 0.1 0.31 11.4 0.1 1.6 1 0 0 1 1 1 0 FMRP KH0 domain WW PF00397.26 CQR52636.1 - 3.4 7.8 7.9 0.13 12.3 0.7 2.4 3 0 0 3 3 3 0 WW domain DNA_ligase_ZBD PF03119.16 CQR52637.1 - 0.0047 16.9 0.2 0.0047 16.9 0.2 1.8 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 CQR52637.1 - 0.0066 15.9 2.1 1.6 8.3 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-RRN7 PF11781.8 CQR52637.1 - 0.01 15.5 2.1 0.62 9.8 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RNA_POL_M_15KD PF02150.16 CQR52637.1 - 0.091 12.7 4.5 8.8 6.3 0.1 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 CQR52637.1 - 0.11 12.3 1.6 3 7.6 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 CQR52637.1 - 0.13 12.2 0.7 9.1 6.3 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 CQR52637.1 - 0.16 12.1 3.6 2.8 8.1 3.6 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 CQR52637.1 - 0.19 11.6 1.9 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf_C2H2_ZHX PF18387.1 CQR52637.1 - 3 7.6 6.6 8.1 6.2 0.5 2.7 2 1 1 3 3 3 0 Zinc-fingers and homeoboxes C2H2 finger domain ABC_tran PF00005.27 CQR52639.1 - 4.2e-28 98.6 0.0 7.4e-28 97.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52639.1 - 2.2e-12 47.4 3.4 7.3e-08 32.6 0.2 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR52639.1 - 0.00047 20.4 0.0 0.0017 18.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.6 CQR52639.1 - 0.0034 18.1 0.0 0.046 14.4 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 CQR52639.1 - 0.011 16.3 0.0 0.018 15.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 CQR52639.1 - 0.049 13.3 0.0 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 CQR52639.1 - 0.13 11.9 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 CQR52639.1 - 0.15 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC2_membrane_4 PF12730.7 CQR52641.1 - 6.5e-12 45.8 11.7 8.1e-12 45.4 11.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR52641.1 - 7.5e-08 32.0 10.0 1.1e-07 31.5 10.0 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR52641.1 - 1.4e-05 24.4 24.7 1.6e-05 24.2 24.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR52641.1 - 0.0012 18.4 23.2 0.0017 17.8 23.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter CHASE2 PF05226.11 CQR52641.1 - 9.7 5.8 5.8 1.1 8.9 1.7 1.5 2 0 0 2 2 2 0 CHASE2 domain ABC2_membrane_4 PF12730.7 CQR52643.1 - 1.7e-19 70.5 4.3 2.8e-19 69.8 4.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR52643.1 - 4.4e-08 32.7 8.4 6e-08 32.3 8.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR52643.1 - 0.00042 19.9 4.5 0.00042 19.9 4.5 2.1 1 1 1 2 2 2 2 ABC-2 family transporter protein DUF1616 PF07760.11 CQR52643.1 - 1.6 8.1 6.9 20 4.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) Biotin_lipoyl PF00364.22 CQR52645.1 - 0.075 12.9 0.1 2.5 8.0 0.1 2.2 1 1 1 2 2 2 0 Biotin-requiring enzyme NfeD PF01957.18 CQR52645.1 - 0.076 13.4 0.0 0.16 12.4 0.0 1.5 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Promethin PF16015.5 CQR52645.1 - 6.2 6.8 9.0 9 6.3 9.0 1.2 1 0 0 1 1 1 0 Promethin Band_7 PF01145.25 CQR52647.1 - 7.6e-25 87.9 0.0 7.6e-25 87.9 0.0 2.9 2 1 1 3 3 3 1 SPFH domain / Band 7 family Flot PF15975.5 CQR52647.1 - 2.1e-12 47.3 4.6 2.1e-12 47.3 4.6 4.5 3 1 0 4 4 4 3 Flotillin RNA_capsid PF03035.14 CQR52647.1 - 1.3 9.0 7.5 0.57 10.2 4.1 2.0 1 1 1 2 2 2 0 Calicivirus putative RNA polymerase/capsid protein TFIIA PF03153.13 CQR52647.1 - 7.1 6.5 15.3 10 6.0 15.3 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Peptidase_M20 PF01546.28 CQR52649.1 - 1.4e-22 80.5 0.0 2.1e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 CQR52649.1 - 0.00027 20.7 0.0 0.00045 20.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 CQR52649.1 - 0.0007 19.5 0.5 0.021 14.8 0.4 2.7 3 1 0 3 3 3 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 CQR52649.1 - 0.027 13.5 0.0 0.053 12.5 0.0 1.4 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase Aldo_ket_red PF00248.21 CQR52651.1 - 6.9e-67 225.7 0.0 7.7e-67 225.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Tautomerase PF01361.21 CQR52653.1 - 1.6e-06 28.0 0.2 0.0022 17.9 0.1 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Lipoprotein_9 PF03180.14 CQR52655.1 - 5.2e-49 166.5 3.6 5.9e-49 166.3 3.6 1.0 1 0 0 1 1 1 1 NLPA lipoprotein Phosphonate-bd PF12974.7 CQR52655.1 - 2.8e-05 23.9 0.0 3.7e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein ABC2_membrane_3 PF12698.7 CQR52655.1 - 0.025 13.7 1.1 0.028 13.5 0.9 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein LPAM_1 PF08139.12 CQR52655.1 - 5 7.8 7.3 1.7e+02 3.0 7.3 2.4 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.22 CQR52657.1 - 2.7e-17 63.1 19.7 2.7e-17 63.1 17.7 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HCV_core PF01542.18 CQR52657.1 - 0.14 12.6 0.3 0.14 12.6 0.3 2.8 3 0 0 3 3 3 0 Hepatitis C virus core protein ABC_tran PF00005.27 CQR52658.1 - 1.5e-36 125.9 0.0 2.6e-36 125.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52658.1 - 2.1e-09 37.6 0.8 0.00034 20.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR52658.1 - 1e-06 28.4 0.7 3.7e-06 26.5 0.7 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NIL PF09383.10 CQR52658.1 - 2.1e-05 24.3 0.0 7e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 NIL domain TniB PF05621.11 CQR52658.1 - 0.00035 20.0 1.1 0.00059 19.3 0.2 1.9 2 0 0 2 2 2 1 Bacterial TniB protein AAA_22 PF13401.6 CQR52658.1 - 0.003 17.8 1.4 0.021 15.1 1.4 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CQR52658.1 - 0.009 16.2 0.1 0.3 11.3 0.1 2.5 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 CQR52658.1 - 0.01 15.8 0.3 0.031 14.2 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 CQR52658.1 - 0.046 14.2 0.8 0.064 13.8 0.8 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR52658.1 - 0.058 13.1 0.2 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR52658.1 - 0.084 12.6 0.2 0.33 10.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR52658.1 - 0.1 12.9 0.4 0.39 11.1 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 CQR52658.1 - 0.19 10.5 0.6 3.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Peripla_BP_3 PF13377.6 CQR52660.1 - 1.7e-33 116.3 0.0 2.5e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR52660.1 - 1.7e-25 90.0 0.0 2.2e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR52660.1 - 1.9e-17 63.7 0.0 6.1e-17 62.1 0.0 1.6 1 1 1 2 2 2 1 Periplasmic binding protein domain LacI PF00356.21 CQR52660.1 - 5.4e-13 48.5 1.1 1.7e-12 46.9 0.2 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_10 PF04967.12 CQR52660.1 - 0.031 14.1 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Response_reg PF00072.24 CQR52661.1 - 2e-31 108.4 0.2 2.8e-31 108.0 0.2 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR52661.1 - 2e-23 82.3 0.0 3.5e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal SSXRD PF09514.10 CQR52661.1 - 0.39 10.3 0.1 0.39 10.3 0.1 1.7 2 0 0 2 2 2 0 SSXRD motif HATPase_c PF02518.26 CQR52663.1 - 1.6e-25 89.8 0.0 5.8e-25 88.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52663.1 - 9.9e-17 60.7 0.6 2.4e-16 59.5 0.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR52663.1 - 2.6e-15 56.5 0.1 6.4e-15 55.3 0.1 1.7 1 0 0 1 1 1 1 HAMP domain Rbsn PF11464.8 CQR52663.1 - 0.12 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Rabenosyn Rab binding domain DUF4389 PF14333.6 CQR52663.1 - 2.6 8.0 7.8 0.97 9.4 1.6 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4389) Peptidase_S41 PF03572.18 CQR52665.1 - 5e-28 97.8 0.1 7.6e-28 97.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.6 CQR52665.1 - 3.4e-05 24.1 0.0 8.7e-05 22.8 0.0 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 CQR52665.1 - 7.9e-05 22.4 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 CQR52665.1 - 0.00015 22.0 0.1 0.00039 20.7 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_4 PF17816.1 CQR52665.1 - 0.0083 16.5 0.0 0.47 10.9 0.0 2.5 2 0 0 2 2 2 1 PDZ domain Tricorn_C1 PF14684.6 CQR52665.1 - 0.13 12.4 0.1 0.3 11.2 0.1 1.6 1 0 0 1 1 1 0 Tricorn protease C1 domain DNA_alkylation PF08713.11 CQR52666.1 - 1.4e-22 80.5 0.0 1.8e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 DNA alkylation repair enzyme Flavodoxin_2 PF02525.17 CQR52668.1 - 1.9e-06 27.8 0.0 3.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR52668.1 - 0.00023 20.9 0.0 0.0029 17.4 0.0 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase FMN_red PF03358.15 CQR52669.1 - 0.0056 16.4 0.0 0.0061 16.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase zf-TFIIB PF13453.6 CQR52669.1 - 0.11 11.8 2.2 0.18 11.2 0.6 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF2922 PF11148.8 CQR52669.1 - 0.19 11.5 0.0 0.37 10.6 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2922) TetR_C_33 PF13305.6 CQR52671.1 - 3.2e-10 40.7 0.0 5.2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR52671.1 - 5e-07 29.4 0.0 9.4e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Glyco_hydro_127 PF07944.12 CQR52673.1 - 2.8e-08 32.7 1.2 0.0041 15.7 0.1 2.5 2 1 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 HTH_18 PF12833.7 CQR52675.1 - 7.3e-11 42.2 0.0 1.7e-10 41.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52675.1 - 2.9e-09 36.8 0.0 0.0038 17.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR52675.1 - 2.3e-07 30.4 0.7 3.9e-07 29.7 0.7 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 CQR52675.1 - 1.3e-06 28.3 0.3 2.9e-06 27.2 0.3 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 CQR52675.1 - 0.0023 17.7 0.0 0.0052 16.5 0.0 1.5 2 0 0 2 2 2 1 Cupin ABC_membrane PF00664.23 CQR52678.1 - 3.9e-38 131.7 17.7 5.2e-38 131.3 17.7 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR52678.1 - 3.5e-33 115.0 0.0 7.2e-33 114.0 0.0 1.6 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 CQR52678.1 - 8.8e-06 25.3 0.1 0.00052 19.5 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR52678.1 - 0.00013 22.3 0.2 0.00039 20.8 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR52678.1 - 0.0003 21.1 0.4 0.0037 17.5 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 CQR52678.1 - 0.0027 17.5 1.7 0.3 10.9 0.3 2.4 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 CQR52678.1 - 0.004 17.6 0.1 0.028 14.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 CQR52678.1 - 0.015 15.1 0.2 0.061 13.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 CQR52678.1 - 0.025 13.7 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 CQR52678.1 - 0.025 15.1 0.1 0.053 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR52678.1 - 0.03 14.2 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase DEAD PF00270.29 CQR52678.1 - 0.04 13.7 0.2 0.31 10.8 0.2 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase SRP54 PF00448.22 CQR52678.1 - 0.059 13.0 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 CQR52678.1 - 0.065 13.0 0.1 1.4 8.7 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 CQR52678.1 - 0.07 12.9 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 CQR52678.1 - 0.074 12.3 0.1 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_10 PF12846.7 CQR52678.1 - 0.091 11.7 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain SbcCD_C PF13558.6 CQR52678.1 - 0.13 12.5 0.2 1.1 9.5 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 CQR52678.1 - 0.18 12.4 0.1 0.39 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain ETRAMP PF09716.10 CQR52678.1 - 1 9.5 3.6 0.8 9.8 0.1 2.4 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Proton_antipo_N PF00662.20 CQR52678.1 - 1.7 8.8 6.6 0.13 12.3 0.6 2.4 2 0 0 2 2 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABC_membrane PF00664.23 CQR52679.1 - 4.4e-45 154.4 10.4 5.9e-45 154.0 10.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR52679.1 - 1.1e-30 107.0 0.0 2.4e-30 105.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 CQR52679.1 - 9.4e-05 22.4 0.0 0.00026 21.0 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 CQR52679.1 - 0.00013 21.5 0.0 0.0006 19.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF3584 PF12128.8 CQR52679.1 - 0.0061 14.2 0.3 0.01 13.4 0.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3584) Zeta_toxin PF06414.12 CQR52679.1 - 0.018 14.3 0.0 0.077 12.3 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_29 PF13555.6 CQR52679.1 - 0.019 14.7 0.1 0.051 13.3 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 CQR52679.1 - 0.022 14.8 0.2 0.21 11.7 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.6 CQR52679.1 - 0.029 14.8 0.2 0.11 12.9 0.2 2.1 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 CQR52679.1 - 0.031 13.5 0.0 3.2 6.9 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 CQR52679.1 - 0.043 14.3 0.1 0.087 13.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 CQR52679.1 - 0.045 12.8 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 CQR52679.1 - 0.078 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR52679.1 - 0.09 12.5 0.0 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 CQR52679.1 - 0.14 12.3 0.6 0.28 11.2 0.2 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_22 PF13401.6 CQR52679.1 - 0.15 12.4 0.0 0.65 10.3 0.0 2.1 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 CQR52679.1 - 0.15 11.7 0.0 0.33 10.6 0.0 1.6 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF4003 PF13170.6 CQR52681.1 - 1.6e-71 241.1 0.2 1.9e-71 240.9 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4003) SAP18 PF06487.12 CQR52681.1 - 0.091 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Sin3 associated polypeptide p18 (SAP18) PMT_2 PF13231.6 CQR52683.1 - 5.1e-09 36.6 16.8 5.1e-09 36.6 16.8 3.4 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1706 PF08020.11 CQR52688.1 - 1.7e-54 184.2 0.9 1.9e-54 184.1 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1706) DinB_2 PF12867.7 CQR52688.1 - 0.014 15.9 0.1 0.018 15.5 0.1 1.3 1 0 0 1 1 1 0 DinB superfamily SLBP_RNA_bind PF15247.6 CQR52688.1 - 0.12 12.5 1.5 0.16 12.1 0.1 1.9 2 0 0 2 2 2 0 Histone RNA hairpin-binding protein RNA-binding domain FBA_2 PF07735.17 CQR52689.1 - 0.13 12.4 0.1 0.26 11.5 0.1 1.6 1 1 0 1 1 1 0 F-box associated N6_Mtase PF02384.16 CQR52693.1 - 2.4e-64 217.6 0.0 3.1e-64 217.2 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 CQR52693.1 - 2.2e-14 54.3 0.5 5.8e-14 52.9 0.0 2.0 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 CQR52693.1 - 4.5e-08 33.0 0.0 8.1e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 CQR52693.1 - 7.3e-05 22.2 0.0 0.012 15.0 0.0 2.4 2 1 0 2 2 2 2 ubiE/COQ5 methyltransferase family MTS PF05175.14 CQR52693.1 - 0.0027 17.3 0.0 0.043 13.4 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.11 CQR52693.1 - 0.0082 16.6 0.0 0.023 15.2 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methylase_S PF01420.19 CQR52696.1 - 2.5e-36 125.4 0.0 1.1e-24 87.6 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain ResIII PF04851.15 CQR52697.1 - 2.4e-36 125.3 0.5 3.1e-35 121.7 0.0 2.8 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 CQR52697.1 - 1.6e-13 50.8 0.1 3.5e-13 49.8 0.1 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase EcoEI_R_C PF08463.10 CQR52697.1 - 4e-13 49.8 0.7 4e-13 49.8 0.7 3.0 3 0 0 3 3 3 1 EcoEI R protein C-terminal DUF4145 PF13643.6 CQR52697.1 - 7.1e-09 35.7 0.0 2.8e-08 33.8 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) Helicase_C PF00271.31 CQR52697.1 - 2.3e-08 34.4 0.1 2.9e-07 30.8 0.0 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 CQR52697.1 - 4.7e-08 33.0 0.0 4.5e-07 29.8 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase HSDR_N PF04313.14 CQR52697.1 - 7.1e-08 32.6 0.0 7.5e-06 26.0 0.0 3.4 3 1 1 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_30 PF13604.6 CQR52697.1 - 0.0006 19.6 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain HSDR_N_2 PF13588.6 CQR52697.1 - 0.0014 18.6 0.0 0.0064 16.5 0.0 2.2 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF2075 PF09848.9 CQR52697.1 - 0.0056 16.0 0.0 0.016 14.5 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF853 PF05872.12 CQR52697.1 - 0.037 12.6 0.1 0.076 11.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Csm1_N PF18504.1 CQR52697.1 - 4.7 7.6 10.2 0.34 11.3 2.9 2.7 3 0 0 3 3 3 0 Csm1 N-terminal domain Fic PF02661.18 CQR52699.1 - 1.7e-23 83.3 0.2 3.9e-23 82.2 0.1 1.7 2 0 0 2 2 2 1 Fic/DOC family MFS_1 PF07690.16 CQR52701.1 - 5.4e-30 104.5 53.4 1.4e-29 103.1 35.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR52701.1 - 1.4e-23 83.1 17.7 1.8e-23 82.7 17.7 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR52701.1 - 2e-05 23.4 30.3 4.6e-05 22.2 6.1 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein MerR_1 PF13411.6 CQR52703.1 - 2e-16 59.8 0.0 5.5e-16 58.4 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR52703.1 - 2.6e-11 43.1 0.1 5.1e-11 42.1 0.1 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.6 CQR52703.1 - 1.2e-05 24.9 1.0 0.069 13.0 0.0 3.6 4 0 0 4 4 4 2 Homeodomain-like domain MerR-DNA-bind PF09278.11 CQR52703.1 - 0.00014 22.3 1.9 0.00028 21.3 1.9 1.5 1 0 0 1 1 1 1 MerR, DNA binding HTH_38 PF13936.6 CQR52703.1 - 0.0014 18.4 0.3 0.35 10.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR52703.1 - 0.0037 17.4 0.4 0.36 11.0 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_7 PF02796.15 CQR52703.1 - 0.0037 17.3 2.1 0.01 15.9 0.1 2.7 4 0 0 4 4 4 1 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 CQR52703.1 - 0.0079 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain TetR_N PF00440.23 CQR52703.1 - 0.0082 15.9 0.1 0.072 12.9 0.1 2.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family Phytochelatin PF05023.14 CQR52703.1 - 0.012 14.9 0.0 0.019 14.2 0.0 1.3 1 1 0 1 1 1 0 Phytochelatin synthase FliT PF05400.13 CQR52703.1 - 0.015 16.1 0.6 0.03 15.1 0.6 1.5 1 0 0 1 1 1 0 Flagellar protein FliT HTH_20 PF12840.7 CQR52703.1 - 0.017 15.2 0.3 3.4 7.8 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_29 PF13551.6 CQR52703.1 - 0.045 13.8 0.0 11 6.2 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn helix UPF0175 PF03683.13 CQR52703.1 - 0.063 13.0 0.1 2.8 7.7 0.1 2.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_11 PF08279.12 CQR52703.1 - 0.093 12.7 1.7 0.83 9.6 0.0 3.2 3 1 0 3 3 3 0 HTH domain HTH_Tnp_4 PF13613.6 CQR52703.1 - 0.096 12.4 0.0 0.35 10.6 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Peptidase_M56 PF05569.11 CQR52705.1 - 1.5e-53 181.9 4.3 1.4e-52 178.8 4.3 2.1 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF4179 PF13786.6 CQR52705.1 - 2.9 8.4 5.7 59 4.2 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) Penicillinase_R PF03965.16 CQR52708.1 - 9.9e-21 74.2 0.0 1.1e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 CQR52708.1 - 0.018 14.9 0.0 0.043 13.7 0.0 1.6 1 1 0 1 1 1 0 MarR family PTS_EIIA_2 PF00359.22 CQR52708.1 - 0.033 14.1 0.1 0.26 11.2 0.1 2.0 1 1 1 2 2 2 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TrmB PF01978.19 CQR52708.1 - 0.046 13.6 0.0 0.11 12.4 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF86 PF01934.17 CQR52708.1 - 0.063 13.1 0.0 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF86 HTH_IclR PF09339.10 CQR52708.1 - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Acetyltransf_1 PF00583.25 CQR52709.1 - 4.1e-17 62.5 0.0 5.8e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR52709.1 - 3.3e-12 46.4 0.0 4.4e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR52709.1 - 6.1e-12 45.8 0.0 1.1e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR52709.1 - 0.00037 20.4 0.0 0.00057 19.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 CQR52709.1 - 0.0034 18.1 0.0 0.004 17.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR52709.1 - 0.0074 16.4 0.0 0.018 15.2 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 CQR52709.1 - 0.02 14.6 0.0 0.044 13.5 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain HUN PF08729.10 CQR52709.1 - 0.42 10.6 3.2 0.46 10.5 0.2 2.2 2 0 0 2 2 2 0 HPC2 and ubinuclein domain LysR_substrate PF03466.20 CQR52712.1 - 9.7e-39 132.9 0.0 1.2e-38 132.6 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR52712.1 - 2.8e-21 75.2 0.0 1.2e-19 69.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR52712.1 - 0.0038 17.0 0.0 0.09 12.6 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Mga PF05043.13 CQR52712.1 - 0.081 13.5 0.7 3.6 8.3 0.0 2.9 2 1 1 3 3 3 0 Mga helix-turn-helix domain PBP_like_2 PF12849.7 CQR52712.1 - 0.11 12.1 0.0 0.28 10.8 0.0 1.6 1 1 1 2 2 2 0 PBP superfamily domain MarR PF01047.22 CQR52712.1 - 0.16 12.0 0.0 0.39 10.7 0.0 1.6 1 0 0 1 1 1 0 MarR family LNP1 PF15419.6 CQR52712.1 - 0.27 11.5 0.0 0.38 11.0 0.0 1.1 1 0 0 1 1 1 0 Leukemia NUP98 fusion partner 1 G6PD_C PF02781.16 CQR52714.1 - 6.4e-99 330.8 0.0 8.2e-99 330.4 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, C-terminal domain G6PD_N PF00479.22 CQR52714.1 - 2.3e-58 197.8 0.0 5.3e-58 196.6 0.0 1.6 2 0 0 2 2 2 1 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF4851 PF16143.5 CQR52714.1 - 0.14 11.6 0.0 0.32 10.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4851) TAL_FSA PF00923.19 CQR52716.1 - 9.1e-55 186.0 3.5 4.5e-54 183.7 3.5 1.9 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase Glu_synthase PF01645.17 CQR52716.1 - 0.083 12.0 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase 6PGD PF00393.19 CQR52718.1 - 1.2e-133 444.9 0.0 1.5e-133 444.6 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 CQR52718.1 - 7.6e-55 185.4 0.0 1.9e-54 184.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR52718.1 - 0.00011 22.7 0.0 0.059 13.9 0.0 2.6 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 CQR52718.1 - 0.0025 17.7 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 CQR52718.1 - 0.0033 17.5 0.1 0.0062 16.6 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 CQR52718.1 - 0.0064 15.9 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 CQR52718.1 - 0.017 15.4 0.0 0.057 13.7 0.0 1.9 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IlvN PF07991.12 CQR52718.1 - 0.09 12.3 0.1 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3-dmu-9_3-mt PF06983.13 CQR52722.1 - 4.8e-46 156.1 0.0 6.8e-46 155.6 0.0 1.2 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase AA_permease PF00324.21 CQR52724.1 - 1e-102 344.2 54.3 1.3e-102 343.9 54.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 CQR52724.1 - 2.3e-35 122.3 57.1 2.8e-35 122.0 57.1 1.1 1 0 0 1 1 1 1 Amino acid permease GGDEF PF00990.21 CQR52726.1 - 7.5e-33 113.6 0.3 1.4e-30 106.2 0.3 2.3 1 1 0 1 1 1 1 Diguanylate cyclase, GGDEF domain DUF202 PF02656.15 CQR52726.1 - 8.9 6.8 13.4 1.1 9.7 0.4 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF202) SBP_bac_5 PF00496.22 CQR52728.1 - 3.1e-91 306.2 14.6 4.8e-91 305.5 14.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3446 PF11928.8 CQR52728.1 - 0.033 14.5 1.8 0.39 11.1 1.7 2.5 2 0 0 2 2 2 0 Early growth response N-terminal domain DUF3558 PF12079.8 CQR52728.1 - 0.43 10.6 5.4 0.79 9.7 5.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) BPD_transp_1 PF00528.22 CQR52730.1 - 5.1e-44 150.2 4.4 5.1e-44 150.2 4.4 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF21 PF01595.20 CQR52730.1 - 0.81 9.4 11.8 0.14 11.9 0.5 3.0 3 0 0 3 3 3 0 Cyclin M transmembrane N-terminal domain BPD_transp_1 PF00528.22 CQR52733.1 - 1.8e-33 115.8 15.4 2.2e-33 115.6 12.0 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR52733.1 - 4.6e-11 42.5 1.8 4.6e-11 42.5 1.8 3.8 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 CQR52734.1 - 3.7e-26 92.3 0.0 5e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR52734.1 - 2.6e-19 69.5 0.0 4.5e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR52734.1 - 3.5e-05 23.8 0.1 0.00084 19.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR52734.1 - 0.00096 18.6 0.3 0.0032 16.9 0.3 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR52734.1 - 0.0034 17.7 1.0 0.1 12.9 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 CQR52734.1 - 0.01 15.4 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 CQR52734.1 - 0.012 15.0 0.5 0.083 12.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 CQR52734.1 - 0.02 15.3 0.0 0.034 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CQR52734.1 - 0.026 14.3 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.26 CQR52734.1 - 0.049 13.3 0.5 0.087 12.5 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.25 CQR52734.1 - 0.14 11.7 0.3 0.18 11.4 0.3 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.27 CQR52735.1 - 6.2e-29 101.3 0.0 8.6e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR52735.1 - 1.1e-18 67.5 0.5 1.9e-18 66.7 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR52735.1 - 0.0014 18.1 0.4 0.007 15.8 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR52735.1 - 0.025 14.5 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 CQR52735.1 - 0.028 14.7 1.6 0.33 11.2 1.6 2.2 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR52735.1 - 0.037 14.1 0.0 0.067 13.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase PF06745.13 CQR52735.1 - 0.042 13.2 0.0 0.2 11.0 0.0 1.9 2 0 0 2 2 2 0 KaiC AAA_16 PF13191.6 CQR52735.1 - 0.06 13.7 0.0 0.095 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CQR52735.1 - 0.066 13.0 0.2 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 CQR52735.1 - 0.094 12.3 0.1 5 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 CQR52735.1 - 0.11 12.2 0.0 0.47 10.2 0.0 1.8 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DEDD_Tnp_IS110 PF01548.17 CQR52736.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR52736.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR52736.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR52736.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DSX_dimer PF08828.10 CQR52737.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR52737.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF45 PF01863.17 CQR52738.1 - 1.4e-52 178.8 0.2 5.7e-51 173.5 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 CQR52738.1 - 6.1e-07 29.7 0.1 1.4e-06 28.5 0.1 1.6 1 0 0 1 1 1 1 WLM domain DUF2268 PF10026.9 CQR52738.1 - 0.047 13.3 0.1 0.07 12.7 0.1 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Peptidase_M57 PF12388.8 CQR52738.1 - 0.049 13.2 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase SprT-like PF10263.9 CQR52738.1 - 0.093 12.6 0.5 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 SprT-like family Acetyltransf_3 PF13302.7 CQR52739.1 - 6e-26 91.8 0.2 7.1e-26 91.5 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR52739.1 - 9.9e-14 51.8 0.0 1.2e-13 51.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR52739.1 - 2.5e-11 43.8 0.0 3.2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR52739.1 - 7.6e-05 22.4 0.1 0.00018 21.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR52739.1 - 0.075 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Asn_synthase PF00733.21 CQR52740.1 - 2.7e-26 93.1 0.0 1.2e-25 90.9 0.0 2.0 2 1 0 2 2 2 1 Asparagine synthase GATase_7 PF13537.6 CQR52740.1 - 2.2e-15 56.6 0.0 4.2e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 CQR52740.1 - 1.1e-12 48.3 0.0 3e-12 46.9 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 CQR52740.1 - 0.036 13.5 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 Aluminium induced protein Hpr_kinase_C PF07475.12 CQR52742.1 - 7.7e-06 25.5 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain ABC_tran PF00005.27 CQR52742.1 - 8.4e-05 23.1 0.0 0.00012 22.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter PEPCK_ATP PF01293.20 CQR52742.1 - 0.00011 21.0 0.0 0.00016 20.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase RsgA_GTPase PF03193.16 CQR52742.1 - 0.0046 16.9 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR52742.1 - 0.01 15.5 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 CQR52742.1 - 0.024 14.7 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 CQR52742.1 - 0.038 14.3 0.0 0.078 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR52742.1 - 0.056 13.6 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR52742.1 - 0.085 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR52742.1 - 0.093 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain CoaE PF01121.20 CQR52742.1 - 0.1 12.3 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_25 PF13481.6 CQR52742.1 - 0.15 11.6 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR52742.1 - 0.19 11.5 0.0 0.75 9.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 CQR52742.1 - 0.22 10.8 0.0 0.33 10.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin PqqD PF05402.12 CQR52743.1 - 3.8e-14 52.7 0.1 4.9e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4777 PF16007.5 CQR52743.1 - 0.087 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) Transglut_core3 PF13471.6 CQR52744.1 - 4.4e-22 78.2 0.0 5.9e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily ABC_tran PF00005.27 CQR52745.1 - 5.7e-32 111.1 0.0 1.5e-31 109.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter ABC_membrane PF00664.23 CQR52745.1 - 1.1e-21 77.7 9.1 1.8e-21 77.0 9.1 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 CQR52745.1 - 5e-12 45.7 0.0 6.8e-08 32.2 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR52745.1 - 2.4e-06 27.2 0.0 5.2e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR52745.1 - 0.00013 21.9 0.0 0.00031 20.7 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 CQR52745.1 - 0.00015 22.0 0.5 0.0018 18.6 0.5 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR52745.1 - 0.00041 20.8 0.4 0.0017 18.8 0.1 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 CQR52745.1 - 0.0025 17.7 0.1 0.2 11.5 0.0 2.8 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 CQR52745.1 - 0.0037 16.9 0.2 0.033 13.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR52745.1 - 0.0047 16.7 1.1 0.061 13.0 1.1 2.2 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 CQR52745.1 - 0.0054 16.9 0.1 0.04 14.0 0.0 2.2 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_23 PF13476.6 CQR52745.1 - 0.006 17.1 0.3 0.023 15.2 0.0 2.0 3 0 0 3 3 2 1 AAA domain ABC_membrane_3 PF13748.6 CQR52745.1 - 0.0068 15.7 0.3 0.0068 15.7 0.3 1.9 2 0 0 2 2 2 1 ABC transporter transmembrane region MMR_HSR1 PF01926.23 CQR52745.1 - 0.02 15.0 0.1 0.083 13.0 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 CQR52745.1 - 0.027 13.3 0.1 1.4 7.6 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 CQR52745.1 - 0.03 14.6 0.2 0.32 11.3 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit KdpD PF02702.17 CQR52745.1 - 0.061 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain DUF3987 PF13148.6 CQR52745.1 - 0.13 11.3 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) NTP_transf_5 PF14907.6 CQR52746.1 - 2.6e-59 200.9 1.4 3.7e-59 200.4 1.4 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1186 PF06685.11 CQR52747.1 - 2.3e-61 207.3 2.9 2.6e-61 207.2 2.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1186) MFS_1 PF07690.16 CQR52748.1 - 3.4e-31 108.5 45.0 3.4e-31 108.5 45.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR52748.1 - 2.4e-23 82.3 27.6 3.1e-23 82.0 27.6 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR52748.1 - 7.7e-06 24.7 18.2 7.7e-06 24.7 18.2 2.8 1 1 2 3 3 3 1 MFS/sugar transport protein APH PF01636.23 CQR52749.1 - 6e-25 88.6 0.0 7.5e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family HEAT_2 PF13646.6 CQR52750.1 - 1.2e-08 35.3 0.0 1.8e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 HEAT repeats Ins_allergen_rp PF06757.13 CQR52750.1 - 0.0033 17.4 0.0 0.0042 17.1 0.0 1.2 1 0 0 1 1 1 1 Insect allergen related repeat, nitrile-specifier detoxification MHCassoc_trimer PF08831.10 CQR52750.1 - 0.011 15.7 1.1 2.4 8.2 0.1 2.4 2 0 0 2 2 2 0 Class II MHC-associated invariant chain trimerisation domain HEAT PF02985.22 CQR52750.1 - 0.12 12.7 0.0 1.7 9.1 0.0 2.2 2 0 0 2 2 2 0 HEAT repeat SMI1_KNR4 PF09346.10 CQR52751.1 - 0.052 14.0 0.1 0.097 13.1 0.1 1.6 1 1 0 1 1 1 0 SMI1 / KNR4 family (SUKH-1) CPBP PF02517.16 CQR52752.1 - 1e-18 67.5 9.3 1e-18 67.5 9.3 2.9 2 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF3792 PF12670.7 CQR52752.1 - 0.099 12.8 0.4 0.099 12.8 0.4 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF3792) Abhydrolase_9_N PF15420.6 CQR52752.1 - 0.39 10.7 14.4 0.06 13.3 2.9 3.2 2 1 1 3 3 3 0 Alpha/beta-hydrolase family N-terminus Bac_export_2 PF01312.19 CQR52752.1 - 1.6 7.9 5.1 0.49 9.6 0.8 2.2 1 1 0 2 2 2 0 FlhB HrpN YscU SpaS Family AMP-binding PF00501.28 CQR52753.1 - 1.2e-81 274.5 0.0 1.5e-81 274.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 CQR52753.1 - 1.7e-23 83.4 0.9 3.6e-23 82.3 0.9 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acetyltransf_1 PF00583.25 CQR52755.1 - 1.1e-10 41.8 0.0 1.5e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR52755.1 - 2.5e-10 40.6 0.0 3.5e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR52755.1 - 4.1e-07 30.0 0.0 6.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR52755.1 - 0.011 15.8 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 CQR52755.1 - 0.13 12.3 0.0 1.8 8.6 0.0 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Cu_amine_oxidN1 PF07833.11 CQR52756.1 - 1.9e-05 25.0 0.0 6.9e-05 23.3 0.0 2.0 2 1 0 2 2 2 1 Copper amine oxidase N-terminal domain DUF4023 PF13215.6 CQR52757.1 - 7e-13 48.3 4.2 9.1e-13 48.0 4.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4023) WYL PF13280.6 CQR52758.1 - 5.9e-11 42.7 0.7 8.3e-11 42.2 0.7 1.2 1 0 0 1 1 1 1 WYL domain DEAD_assoc PF08494.11 CQR52758.1 - 0.075 12.8 0.1 6.1 6.6 0.0 2.7 2 1 1 3 3 3 0 DEAD/H associated WYL PF13280.6 CQR52759.1 - 3.4e-29 102.1 0.3 6.3e-29 101.2 0.3 1.5 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR52759.1 - 2.7e-05 24.0 0.1 0.024 14.6 0.1 2.7 2 0 0 2 2 2 2 HTH domain HTH_DeoR PF08220.12 CQR52759.1 - 0.00017 21.2 0.1 0.29 10.9 0.0 3.3 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 CQR52759.1 - 0.0054 16.8 0.2 0.072 13.2 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR52759.1 - 0.0065 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 CQR52759.1 - 0.038 14.0 0.2 0.17 11.9 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_30 PF13556.6 CQR52759.1 - 0.052 13.3 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Dopey_N PF04118.14 CQR52759.1 - 0.07 12.2 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Dopey, N-terminal Mga PF05043.13 CQR52759.1 - 0.076 13.6 0.2 0.27 11.9 0.2 1.9 1 0 0 1 1 1 0 Mga helix-turn-helix domain TROVE PF05731.11 CQR52761.1 - 4.4e-18 65.6 0.0 2.2e-12 46.8 0.0 2.3 2 0 0 2 2 2 2 TROVE domain VWA_CoxE PF05762.14 CQR52761.1 - 0.00026 20.5 0.0 0.00044 19.7 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 CQR52761.1 - 0.0028 17.8 0.0 0.0048 17.0 0.0 1.4 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_2 PF13519.6 CQR52761.1 - 0.042 14.5 0.0 0.41 11.3 0.0 2.6 2 1 0 2 2 2 0 von Willebrand factor type A domain His_kinase PF06580.13 CQR52763.1 - 6.1e-18 64.9 1.3 1e-17 64.2 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR52763.1 - 2.7e-08 34.0 0.1 7e-08 32.7 0.1 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR52763.1 - 5.5e-08 33.3 0.1 1.1e-07 32.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 CQR52763.1 - 1.3e-06 28.4 4.7 2.8e-06 27.3 4.7 1.5 1 0 0 1 1 1 1 Cache domain Deltameth_res PF16020.5 CQR52763.1 - 0.32 10.9 3.0 0.4 10.6 0.2 2.3 2 0 0 2 2 2 0 Deltamethrin resistance Tmemb_9 PF05434.11 CQR52763.1 - 1 9.3 6.5 0.51 10.2 3.2 2.0 2 0 0 2 2 2 0 TMEM9 COX4_pro_2 PF07835.12 CQR52763.1 - 6.4 7.0 6.0 43 4.3 0.2 2.5 2 0 0 2 2 2 0 Bacterial aa3 type cytochrome c oxidase subunit IV Response_reg PF00072.24 CQR52765.1 - 9.4e-28 96.6 0.0 6.9e-26 90.6 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52765.1 - 5.3e-20 71.5 0.0 1.7e-19 69.9 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52765.1 - 1.5e-13 50.4 0.1 3.9e-07 30.0 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR52765.1 - 6.1e-11 42.6 0.1 1.6e-10 41.2 0.1 1.7 1 0 0 1 1 1 1 GGDEF-like domain DUF3502 PF12010.8 CQR52766.1 - 9.8e-47 158.8 0.6 9.8e-47 158.8 0.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3502) SBP_bac_1 PF01547.25 CQR52766.1 - 1.4e-13 51.5 8.0 1.4e-13 51.5 8.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF4969 PF16339.5 CQR52766.1 - 0.0013 19.0 0.0 0.0035 17.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4969) BPD_transp_1 PF00528.22 CQR52769.1 - 1.5e-14 54.1 10.5 1.5e-14 54.1 10.5 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52771.1 - 8.3e-10 38.7 35.3 7.5e-08 32.3 35.3 2.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Ycf70 PF17382.2 CQR52771.1 - 0.11 12.9 0.3 0.11 12.9 0.3 1.9 2 0 0 2 2 2 0 Uncharacterized Ycf70-like DUF2304 PF10066.9 CQR52771.1 - 4.1 7.7 15.5 1.3 9.3 9.3 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Glyco_hydro_3 PF00933.21 CQR52773.1 - 3.2e-73 246.9 0.0 4.3e-73 246.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR52773.1 - 2.3e-53 181.2 0.0 2.8e-50 171.1 0.0 2.3 2 0 0 2 2 2 2 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 CQR52773.1 - 3e-20 72.1 0.9 6.3e-20 71.1 0.1 2.0 2 0 0 2 2 2 1 Fibronectin type III-like domain CARDB PF07705.11 CQR52773.1 - 0.12 12.6 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 CARDB Glyco_hydro_38N PF01074.22 CQR52775.1 - 8.7e-75 251.7 0.1 1.4e-74 251.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 CQR52775.1 - 1.9e-62 211.1 0.0 3.1e-62 210.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 CQR52775.1 - 1.6e-22 79.5 0.0 3.5e-22 78.3 0.0 1.7 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 CQR52775.1 - 1.1e-13 51.1 0.0 2.4e-13 50.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_125 PF06824.11 CQR52777.1 - 7.2e-149 496.2 0.0 8.3e-149 496.0 0.0 1.0 1 0 0 1 1 1 1 Metal-independent alpha-mannosidase (GH125) Glyco_hydro_42 PF02449.15 CQR52780.1 - 2.3e-09 37.1 1.0 6.4e-07 29.0 0.2 2.3 2 0 0 2 2 2 2 Beta-galactosidase Cellulase PF00150.18 CQR52780.1 - 1.7e-06 27.7 0.5 0.00026 20.5 0.0 2.6 2 1 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) DUF4434 PF14488.6 CQR52780.1 - 0.018 15.1 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) Glyco_hydro_38 PF18438.1 CQR52782.1 - 4.1e-40 136.3 0.0 8.1e-40 135.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain 1 Glyco_hydro_38N PF01074.22 CQR52782.1 - 6e-27 94.7 0.0 1.3e-26 93.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 CQR52782.1 - 6.3e-24 85.2 0.0 1e-23 84.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 CQR52782.1 - 8.2e-14 51.5 0.0 1.7e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 CQR52782.1 - 5.4e-09 36.0 0.0 1.2e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain WYL PF13280.6 CQR52790.1 - 7.4e-44 149.8 0.6 9.4e-44 149.5 0.6 1.1 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR52790.1 - 8e-05 22.5 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR52790.1 - 0.00012 21.6 0.1 0.00026 20.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Catalase PF00199.19 CQR52793.1 - 4.1e-200 664.8 0.1 4.9e-200 664.5 0.1 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 CQR52793.1 - 4.6e-26 90.8 0.0 9.1e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 Catalase-related immune-responsive GGDEF PF00990.21 CQR52795.1 - 4.5e-46 156.5 0.0 7.4e-46 155.8 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Phosphorylase PF00343.20 CQR52797.1 - 2.5e-22 79.0 0.0 1.7e-10 39.9 0.0 4.2 4 0 0 4 4 4 4 Carbohydrate phosphorylase DUF3417 PF11897.8 CQR52797.1 - 0.006 17.0 1.1 0.015 15.7 0.0 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF3417) PfkB PF00294.24 CQR52799.1 - 1.6e-77 260.8 4.7 1.7e-77 260.7 4.7 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR52799.1 - 1.4e-11 44.3 0.5 2.2e-11 43.6 0.5 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PEP-utilizers PF00391.23 CQR52799.1 - 0.086 12.6 2.2 0.21 11.4 1.2 2.3 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain DUF4357 PF14267.6 CQR52799.1 - 0.11 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4357) DHquinase_I PF01487.15 CQR52801.1 - 1.1e-70 238.5 0.0 1.2e-70 238.3 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase CMD PF02627.20 CQR52803.1 - 1.5e-22 79.4 0.0 1.9e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MerR-DNA-bind PF09278.11 CQR52805.1 - 7.4e-06 26.4 0.1 8.9e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 MerR, DNA binding HAUS5 PF14817.6 CQR52805.1 - 0.02 13.7 0.1 0.02 13.7 0.1 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 EMP24_GP25L PF01105.24 CQR52805.1 - 0.071 13.0 0.1 0.072 13.0 0.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD TipAS PF07739.13 CQR52807.1 - 1.4e-36 125.6 5.9 3e-36 124.5 5.9 1.6 1 0 0 1 1 1 1 TipAS antibiotic-recognition domain MerR_1 PF13411.6 CQR52807.1 - 5.2e-17 61.7 0.2 1.1e-16 60.7 0.2 1.5 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR52807.1 - 1.5e-11 43.9 1.0 3.3e-11 42.8 1.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR52807.1 - 6.3e-07 29.8 1.8 6.3e-07 29.8 1.8 3.0 2 1 1 3 3 3 1 MerR, DNA binding Synaptobrevin PF00957.21 CQR52807.1 - 0.011 15.5 0.9 0.59 10.0 0.0 2.3 2 0 0 2 2 2 0 Synaptobrevin MIF4G_like_2 PF09090.11 CQR52807.1 - 0.039 13.4 4.8 0.052 13.0 4.8 1.1 1 0 0 1 1 1 0 MIF4G like Exonuc_VII_L PF02601.15 CQR52807.1 - 0.064 12.8 1.6 0.073 12.6 1.6 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit RNase_T PF00929.24 CQR52809.1 - 1.2e-20 74.7 0.0 7.9e-20 72.1 0.0 1.9 2 0 0 2 2 2 1 Exonuclease DUF5051 PF16473.5 CQR52809.1 - 1.2e-05 25.4 0.0 2.5e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like DUF4440 PF14534.6 CQR52811.1 - 9.3e-14 51.7 0.0 1.1e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Spermine_synth PF01564.17 CQR52813.1 - 0.0068 15.8 0.0 0.0095 15.4 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain MTS PF05175.14 CQR52813.1 - 0.045 13.3 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Response_reg PF00072.24 CQR52815.1 - 3.5e-24 85.1 0.0 6e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52815.1 - 5.2e-20 71.5 0.0 1.3e-19 70.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52815.1 - 2.5e-16 59.3 0.0 2.5e-08 33.8 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR52815.1 - 6.6e-07 29.6 0.0 1.6e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 GGDEF-like domain His_kinase PF06580.13 CQR52817.1 - 1.6e-22 79.6 1.6 3.1e-22 78.7 0.5 2.1 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR52817.1 - 5.2e-14 52.6 2.1 7.7e-14 52.1 2.1 1.3 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR52817.1 - 2.3e-10 40.7 0.0 5.2e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR52817.1 - 6.4e-08 33.1 0.0 2e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR52817.1 - 0.058 13.4 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF2430 PF10353.9 CQR52817.1 - 0.067 13.6 0.2 0.16 12.4 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2430) HATPase_c_3 PF13589.6 CQR52817.1 - 0.099 12.5 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4229 PF14012.6 CQR52817.1 - 1.7 8.8 5.3 21 5.3 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) BPD_transp_1 PF00528.22 CQR52819.1 - 1.6e-09 37.8 17.3 1.6e-09 37.8 17.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52821.1 - 1.8e-18 66.9 14.9 1.8e-18 66.9 14.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR52823.1 - 3.1e-40 139.1 14.1 6.7e-40 138.0 14.1 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR52823.1 - 6.9e-37 127.8 10.1 1e-36 127.2 10.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Ig_mannosidase PF17753.1 CQR52824.1 - 2.3e-18 65.7 0.0 7.3e-18 64.1 0.0 1.9 2 0 0 2 2 2 1 Ig-fold domain Mannosidase_ig PF17786.1 CQR52824.1 - 1.5e-15 57.6 0.0 3.7e-15 56.3 0.0 1.7 1 0 0 1 1 1 1 Mannosidase Ig/CBM-like domain Glyco_hydro_2 PF00703.21 CQR52824.1 - 1.2e-06 29.2 0.0 1e-05 26.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.18 CQR52824.1 - 4e-05 23.6 0.1 0.00013 21.9 0.1 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 CQR52824.1 - 6.5e-05 22.2 0.2 0.00028 20.1 0.2 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Ig_GlcNase PF18368.1 CQR52824.1 - 0.047 13.8 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF3876 PF12992.7 CQR52827.1 - 0.091 12.8 2.3 51 4.0 0.1 3.6 2 2 2 4 4 4 0 Domain of unknown function, B. Theta Gene description (DUF3876) Toxin_8 PF07365.12 CQR52827.1 - 5.2 7.3 11.0 65 3.8 0.1 4.7 3 1 2 5 5 5 0 Alpha conotoxin precursor UcrQ PF02939.16 CQR52829.1 - 0.0029 17.5 0.0 26 4.8 0.0 4.4 1 1 5 6 6 6 1 UcrQ family DUF3471 PF11954.8 CQR52829.1 - 0.022 15.2 0.5 9.9 6.7 0.5 3.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3471) T2SSE PF00437.20 CQR52829.1 - 0.5 9.4 5.8 22 4.0 0.2 3.5 1 1 3 4 4 4 0 Type II/IV secretion system protein DUF2294 PF10057.9 CQR52830.1 - 0.047 13.8 0.0 0.055 13.6 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) SBP_bac_8 PF13416.6 CQR52832.1 - 4e-29 102.3 7.7 6e-29 101.7 7.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR52832.1 - 2.4e-26 92.7 2.2 3.6e-26 92.1 2.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR52832.1 - 1.5e-17 64.6 9.2 2.5e-17 63.8 9.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR52832.1 - 1.6e-11 44.4 0.2 3.1e-11 43.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phage_TAC_4 PF08748.11 CQR52832.1 - 0.2 12.0 1.5 4.2 7.7 0.2 2.5 2 0 0 2 2 2 0 Phage tail assembly chaperone IU_nuc_hydro PF01156.19 CQR52835.1 - 1.7e-90 303.7 0.5 2e-90 303.4 0.5 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase BPD_transp_1 PF00528.22 CQR52837.1 - 1.1e-16 61.1 16.7 1.1e-16 61.1 16.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MWFE PF15879.5 CQR52837.1 - 1 9.6 5.5 25 5.1 0.2 3.6 4 0 0 4 4 4 0 NADH-ubiquinone oxidoreductase MWFE subunit Ndc1_Nup PF09531.10 CQR52837.1 - 1.1 7.8 4.0 1.9 7.1 4.0 1.5 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup BPD_transp_1 PF00528.22 CQR52839.1 - 2.5e-13 50.2 20.0 2.5e-13 50.2 20.0 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR52841.1 - 3.3e-31 108.6 0.0 6.4e-31 107.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 CQR52841.1 - 1e-12 48.0 0.0 3.1e-12 46.5 0.0 1.9 1 0 0 1 1 1 1 TOBE domain Rad17 PF03215.15 CQR52841.1 - 0.00017 21.5 0.0 0.00027 20.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_21 PF13304.6 CQR52841.1 - 0.00039 20.3 1.0 0.45 10.3 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR52841.1 - 0.0036 17.7 0.0 0.0057 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 CQR52841.1 - 0.0037 17.7 0.1 0.0072 16.8 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 CQR52841.1 - 0.017 15.4 0.1 0.026 14.8 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR52841.1 - 0.032 14.7 0.3 0.05 14.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 CQR52841.1 - 0.077 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 CQR52841.1 - 0.088 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Ub-RnfH PF03658.14 CQR52841.1 - 0.1 13.0 0.1 9.9 6.6 0.0 3.1 3 0 0 3 3 3 0 RnfH family Ubiquitin RsgA_GTPase PF03193.16 CQR52841.1 - 0.13 12.2 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Adenine_deam_C PF13382.6 CQR52842.1 - 1.8e-53 180.4 0.0 3.2e-53 179.6 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 CQR52842.1 - 1.2e-18 67.6 1.4 8.3e-17 61.5 1.4 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR52842.1 - 2.2e-09 37.3 0.4 0.0016 18.0 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family Fim-adh_lectin PF09222.10 CQR52842.1 - 0.15 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Fimbrial adhesin F17-AG, lectin domain Jiraiya PF15038.6 CQR52845.1 - 0.027 13.9 1.4 0.037 13.5 1.3 1.3 1 1 0 1 1 1 0 Jiraiya CYTH PF01928.21 CQR52846.1 - 3.9e-08 33.4 0.8 5.5e-08 32.9 0.8 1.2 1 0 0 1 1 1 1 CYTH domain Thr_synth_N PF14821.6 CQR52849.1 - 1.7e-25 89.0 0.0 4.2e-25 87.8 0.0 1.7 1 0 0 1 1 1 1 Threonine synthase N terminus PALP PF00291.25 CQR52849.1 - 8.5e-18 64.8 0.0 3.7e-17 62.7 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GFO_IDH_MocA PF01408.22 CQR52851.1 - 5.4e-26 91.8 0.1 8.8e-26 91.1 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 CQR52851.1 - 2.8e-05 24.7 0.0 4.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 CQR52851.1 - 0.0013 19.2 0.0 0.0024 18.3 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Radical_SAM PF04055.21 CQR52854.1 - 9.4e-15 55.4 0.0 1.3e-14 54.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 CQR52854.1 - 4.7e-13 49.4 0.1 1.1e-12 48.3 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 CQR52854.1 - 0.00011 22.3 0.0 0.00026 21.1 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 CQR52854.1 - 0.0032 17.7 0.1 0.013 15.8 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain HAD PF12710.7 CQR52854.1 - 0.18 12.2 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase PhoU PF01895.19 CQR52857.1 - 0.094 13.2 1.3 0.81 10.2 0.7 2.2 2 0 0 2 2 2 0 PhoU domain GrpE PF01025.19 CQR52857.1 - 0.52 10.0 8.7 0.13 11.9 4.9 1.9 2 0 0 2 2 2 0 GrpE DUF1664 PF07889.12 CQR52857.1 - 0.85 9.7 6.2 5.1 7.1 2.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF1690 PF07956.11 CQR52857.1 - 1.5 9.3 16.7 0.63 10.5 0.7 2.3 1 1 0 2 2 2 0 Protein of Unknown function (DUF1690) OmpH PF03938.14 CQR52857.1 - 3.7 7.9 22.7 3 8.2 0.3 2.5 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) Methyltransf_12 PF08242.12 CQR52858.1 - 1.5e-10 41.7 0.0 2.9e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR52858.1 - 1.6e-08 35.2 0.0 3.5e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR52858.1 - 1.5e-07 31.9 0.0 3.6e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR52858.1 - 3.3e-07 30.2 0.0 7.5e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR52858.1 - 1.9e-05 24.6 0.0 3.6e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 CQR52858.1 - 0.00076 19.1 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 CQR52858.1 - 0.0049 16.2 0.0 0.01 15.1 0.0 1.6 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 CQR52858.1 - 0.046 13.3 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Phage_GPD PF05954.11 CQR52858.1 - 0.048 13.0 0.0 0.71 9.1 0.0 2.2 2 0 0 2 2 2 0 Phage late control gene D protein (GPD) Methyltransf_4 PF02390.17 CQR52858.1 - 0.087 12.3 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 Putative methyltransferase FCD PF07729.12 CQR52860.1 - 9.1e-20 71.3 0.5 1.2e-19 70.9 0.5 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR52860.1 - 1e-13 50.7 0.0 1.6e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Telomere_reg-2 PF10193.9 CQR52860.1 - 0.0046 17.4 0.3 0.0096 16.4 0.2 1.6 1 1 0 1 1 1 1 Telomere length regulation protein HTH_41 PF14502.6 CQR52860.1 - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Amidohydro_2 PF04909.14 CQR52862.1 - 1.6e-13 51.1 0.0 1.8e-13 50.9 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase Glyco_hydro_57 PF03065.15 CQR52862.1 - 0.059 12.6 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 SBP_bac_8 PF13416.6 CQR52863.1 - 1.2e-35 123.7 1.1 1.7e-35 123.2 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR52863.1 - 8.9e-33 113.7 0.0 1.4e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR52863.1 - 3.3e-21 76.6 4.4 5.2e-21 75.9 4.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR52863.1 - 5.4e-16 59.0 0.1 9.1e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein aGPT-Pplase2 PF18724.1 CQR52863.1 - 0.085 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 2 BPD_transp_1 PF00528.22 CQR52866.1 - 2.1e-13 50.4 17.6 2.1e-13 50.4 17.6 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UNC-93 PF05978.16 CQR52866.1 - 0.016 14.9 0.5 0.016 14.9 0.5 1.8 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 BPD_transp_1 PF00528.22 CQR52867.1 - 1.2e-19 70.8 22.3 1.2e-19 70.8 22.3 2.0 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR52869.1 - 4.3e-36 124.4 0.0 6.4e-36 123.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 CQR52869.1 - 3.1e-08 33.7 0.1 9.3e-08 32.1 0.1 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 CQR52869.1 - 2.3e-06 27.6 0.0 0.0058 16.5 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR52869.1 - 0.00028 20.4 0.0 0.03 13.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 CQR52869.1 - 0.00069 20.1 0.0 0.0028 18.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 CQR52869.1 - 0.0024 17.8 0.1 0.0059 16.6 0.1 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain Zeta_toxin PF06414.12 CQR52869.1 - 0.0031 16.8 0.0 0.0057 15.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 CQR52869.1 - 0.0048 17.2 0.0 0.0087 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR52869.1 - 0.0058 17.0 0.3 0.01 16.2 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 CQR52869.1 - 0.012 15.0 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 CQR52869.1 - 0.025 14.3 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR52869.1 - 0.057 13.3 0.1 0.098 12.5 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase G-alpha PF00503.20 CQR52869.1 - 0.059 12.5 0.0 0.087 12.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit HTH_18 PF12833.7 CQR52870.1 - 5.3e-21 74.7 0.0 1e-20 73.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52870.1 - 3.8e-15 55.5 0.0 1.9e-10 40.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR52870.1 - 5.7e-13 48.4 0.0 1.1e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 CQR52870.1 - 1.2e-09 38.2 0.7 2.5e-09 37.1 0.7 1.5 1 1 0 1 1 1 1 AraC-like ligand binding domain DMSP_lyase PF16867.5 CQR52870.1 - 0.01 15.5 0.1 0.023 14.3 0.0 1.6 2 0 0 2 2 2 1 Dimethlysulfonioproprionate lyase MannoseP_isomer PF01050.18 CQR52870.1 - 0.094 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Glyco_hydro_31 PF01055.26 CQR52872.1 - 1e-119 400.7 1.5 1.3e-119 400.3 1.5 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 CQR52872.1 - 2.4e-16 59.8 0.2 5.2e-16 58.7 0.2 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like Lipase_GDSL_2 PF13472.6 CQR52875.1 - 7.5e-14 52.5 0.2 1.4e-13 51.7 0.2 1.5 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR52875.1 - 4e-07 30.2 0.8 1.5e-06 28.4 0.8 2.0 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.6 CQR52875.1 - 0.011 15.8 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Flag1_repress PF03614.13 CQR52877.1 - 0.015 15.1 0.1 0.017 15.0 0.1 1.1 1 0 0 1 1 1 0 Repressor of phase-1 flagellin YjcZ_2 PF09680.10 CQR52878.1 - 0.87 9.3 9.1 1.5 8.5 9.1 1.3 1 0 0 1 1 1 0 Family of unknown function Response_reg PF00072.24 CQR52880.1 - 1.7e-21 76.5 0.1 3e-21 75.7 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52880.1 - 1.7e-20 73.1 0.0 9.7e-20 70.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52880.1 - 6.3e-19 67.6 0.1 7.4e-10 38.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.14 CQR52880.1 - 0.0022 18.2 0.2 0.005 17.1 0.2 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HMG_box PF00505.19 CQR52880.1 - 0.078 13.4 0.3 2.9 8.4 0.0 2.6 2 0 0 2 2 2 0 HMG (high mobility group) box DUF3966 PF13110.6 CQR52880.1 - 0.11 12.4 0.2 0.28 11.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3966) His_kinase PF06580.13 CQR52882.1 - 7.7e-24 83.8 2.3 2.4e-23 82.3 2.3 1.9 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR52882.1 - 2.4e-19 70.1 4.0 6e-19 68.8 3.2 1.9 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR52882.1 - 4.1e-11 43.1 0.1 1.8e-10 41.0 0.1 2.3 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR52882.1 - 0.0012 19.3 0.0 0.0025 18.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DHHC PF01529.20 CQR52882.1 - 0.47 10.6 3.7 3.4 7.8 0.2 2.4 2 0 0 2 2 2 0 DHHC palmitoyltransferase Ac76 PF05814.11 CQR52882.1 - 1.2 9.2 6.1 8.1 6.5 2.1 2.5 2 0 0 2 2 2 0 Orf76 (Ac76) BPD_transp_1 PF00528.22 CQR52885.1 - 6.5e-21 74.9 21.8 6.5e-21 74.9 21.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component CRCB PF02537.15 CQR52885.1 - 0.16 12.3 10.2 1.4 9.3 10.2 2.6 1 1 0 1 1 1 0 CrcB-like protein, Camphor Resistance (CrcB) BPD_transp_1 PF00528.22 CQR52887.1 - 2e-19 70.1 20.8 2e-19 70.1 20.8 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR52889.1 - 2.3e-41 142.5 17.6 2.3e-41 142.5 17.6 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR52889.1 - 5.4e-37 128.4 14.0 8.6e-37 127.8 14.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4969 PF16339.5 CQR52889.1 - 0.018 15.4 0.1 0.041 14.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) DUF4404 PF14357.6 CQR52889.1 - 0.1 13.3 0.0 0.31 11.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) HTH_18 PF12833.7 CQR52891.1 - 2e-20 72.9 0.2 3.9e-20 71.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR52891.1 - 1e-14 54.6 0.1 1.7e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_AraC PF00165.23 CQR52891.1 - 4.3e-13 49.0 0.6 4.4e-08 33.0 0.0 3.1 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR52891.1 - 0.063 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Cupin domain Glyco_hydro_42 PF02449.15 CQR52893.1 - 3.1e-149 497.4 4.6 3.8e-149 497.1 4.6 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 CQR52893.1 - 1.1e-70 237.4 0.0 1.9e-70 236.6 0.0 1.4 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_14 PF01373.17 CQR52893.1 - 5.5e-05 22.3 0.4 0.00052 19.1 0.1 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase family 14 Glyco_hydro_42C PF08533.10 CQR52893.1 - 6.6e-05 22.6 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain Cellulase PF00150.18 CQR52893.1 - 0.00023 20.7 0.7 0.00034 20.1 0.2 1.5 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.19 CQR52893.1 - 0.00057 19.6 2.3 0.0011 18.7 0.3 2.4 2 1 0 2 2 2 1 Glycosyl hydrolases family 35 DUF4434 PF14488.6 CQR52893.1 - 0.039 14.0 1.8 0.076 13.0 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4434) Glyco_hydro_2_C PF02836.17 CQR52893.1 - 0.078 12.1 0.1 0.31 10.1 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolases family 2, TIM barrel domain LBP_M PF17385.2 CQR52893.1 - 0.13 11.7 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Lacto-N-biose phosphorylase central domain YpsA PF06908.11 CQR52895.1 - 1.5e-60 204.0 0.0 1.7e-60 203.8 0.0 1.0 1 0 0 1 1 1 1 YspA SLOG family YCII PF03795.14 CQR52897.1 - 5.6e-13 49.1 0.0 6.5e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 YCII-related domain LAL_C2 PF18603.1 CQR52897.1 - 0.04 14.1 0.0 0.41 10.8 0.1 2.1 1 1 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 DpnD-PcfM PF14207.6 CQR52897.1 - 0.049 13.5 0.5 0.084 12.8 0.1 1.5 2 0 0 2 2 2 0 DpnD/PcfM-like protein MIase PF02426.16 CQR52897.1 - 0.088 13.0 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Muconolactone delta-isomerase Amidase PF01425.21 CQR52899.1 - 4.9e-81 273.0 0.0 4.6e-76 256.6 0.0 2.7 2 1 1 3 3 3 2 Amidase PilW PF16074.5 CQR52901.1 - 0.16 12.0 3.9 0.22 11.5 0.8 2.5 2 1 1 3 3 3 0 Type IV Pilus-assembly protein W LPAM_2 PF13627.6 CQR52901.1 - 0.59 10.1 2.0 0.99 9.3 2.0 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site HATPase_c PF02518.26 CQR52905.1 - 5.5e-23 81.6 0.0 1.1e-22 80.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR52905.1 - 2.1e-14 53.3 0.0 6e-14 51.8 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR52905.1 - 9.8e-06 25.4 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR52905.1 - 0.00013 22.3 0.2 0.0004 20.7 0.0 2.0 2 0 0 2 2 2 1 HAMP domain TMEM190 PF15431.6 CQR52905.1 - 0.034 14.3 0.1 0.066 13.4 0.1 1.4 1 0 0 1 1 1 0 Transmembrane protein 190 Cation_ATPase_C PF00689.21 CQR52905.1 - 0.26 11.0 3.1 0.79 9.4 3.1 1.8 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus Response_reg PF00072.24 CQR52906.1 - 6e-29 100.5 0.0 8.6e-29 100.0 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR52906.1 - 1.3e-22 79.7 0.0 2.1e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 CQR52906.1 - 0.11 12.9 0.0 0.29 11.5 0.0 1.8 2 1 0 2 2 2 0 Flagellar regulatory protein FleQ YceI PF04264.13 CQR52908.1 - 3.5e-22 79.5 1.4 5.6e-22 78.9 1.4 1.3 1 0 0 1 1 1 1 YceI-like domain NUDIX PF00293.28 CQR52910.1 - 3.1e-17 62.8 0.1 4e-17 62.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 CQR52910.1 - 8.3e-16 58.0 0.0 9.5e-16 57.8 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.6 CQR52910.1 - 0.16 11.5 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Nucleotide hydrolase DUF1648 PF07853.11 CQR52912.1 - 4.7e-08 32.6 0.2 4.7e-08 32.6 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1648) GFO_IDH_MocA PF01408.22 CQR52914.1 - 1.2e-20 74.6 0.1 1.6e-20 74.1 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 CQR52914.1 - 0.00076 20.0 0.0 0.0013 19.2 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 CQR52914.1 - 0.055 13.5 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain ADP_ribosyl_GH PF03747.14 CQR52916.1 - 1.7e-68 231.5 7.3 1.9e-68 231.3 7.3 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase LysR_substrate PF03466.20 CQR52918.1 - 3.8e-24 85.2 0.0 5e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR52918.1 - 6.8e-13 48.4 0.0 1.1e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Thiolase_N PF00108.23 CQR52920.1 - 2.3e-105 351.6 4.6 3.6e-105 351.0 4.6 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 CQR52920.1 - 2.1e-49 166.2 3.2 2.1e-49 166.2 3.2 2.0 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 CQR52920.1 - 2e-06 27.6 2.4 7e-06 25.8 1.2 2.5 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 CQR52920.1 - 0.0037 16.0 0.0 0.0071 15.1 0.0 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) ACP_syn_III PF08545.10 CQR52920.1 - 0.019 14.8 0.6 0.062 13.2 0.1 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 CQR52920.1 - 0.026 14.7 0.8 0.13 12.4 0.4 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF348 PF03990.14 CQR52920.1 - 0.3 10.9 1.4 13 5.6 0.1 2.6 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Ketoacyl-synt_C PF02801.22 CQR52920.1 - 0.93 9.5 4.9 22 5.1 0.0 4.0 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain CoA_trans PF01144.23 CQR52922.1 - 8.6e-65 218.2 7.4 9.6e-65 218.0 7.4 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hydro PF02550.15 CQR52922.1 - 0.0067 16.4 0.9 0.12 12.3 0.0 2.3 2 1 0 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain CoA_trans PF01144.23 CQR52924.1 - 4.4e-36 124.3 1.3 5.2e-36 124.1 1.3 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hyd_C PF13336.6 CQR52924.1 - 1.3e-05 25.2 0.1 2.2e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain CitF PF04223.12 CQR52924.1 - 0.022 13.7 0.1 0.027 13.4 0.1 1.2 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) adh_short_C2 PF13561.6 CQR52927.1 - 8.3e-62 208.8 0.0 1.3e-61 208.1 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR52927.1 - 1.2e-58 197.8 0.2 1.5e-58 197.5 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR52927.1 - 7.6e-11 42.3 0.1 1.3e-10 41.5 0.1 1.4 1 1 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 CQR52927.1 - 0.00043 19.5 0.1 0.0006 19.0 0.1 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 CQR52927.1 - 0.0058 16.1 0.1 0.024 14.1 0.0 1.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 CQR52927.1 - 0.026 13.6 0.6 0.049 12.6 0.5 1.5 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.18 CQR52927.1 - 0.072 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3879 PF12995.7 CQR52927.1 - 0.15 11.8 0.1 0.25 11.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3879) GntP_permease PF02447.16 CQR52929.1 - 3.4e-13 49.1 40.6 5.9e-13 48.3 40.6 1.3 1 1 0 1 1 1 1 GntP family permease Na_H_antiporter PF03553.14 CQR52929.1 - 6.7e-05 22.3 43.3 0.0001 21.7 21.3 2.6 1 1 1 2 2 2 2 Na+/H+ antiporter family DUF2590 PF10761.9 CQR52929.1 - 0.033 14.3 0.0 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2590) Thy1 PF02511.15 CQR52931.1 - 2.3e-35 122.1 0.1 2.8e-35 121.8 0.1 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein NUDIX PF00293.28 CQR52933.1 - 3.1e-12 46.7 0.1 4.6e-12 46.1 0.1 1.3 1 1 0 1 1 1 1 NUDIX domain Phage_terminase PF10668.9 CQR52933.1 - 0.16 12.0 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit Glyco_tran_WecB PF03808.13 CQR52935.1 - 2e-54 184.0 0.1 3.4e-54 183.3 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase WecB/TagA/CpsF family RRF_GI PF12614.8 CQR52935.1 - 0.0066 16.6 0.1 0.012 15.8 0.1 1.3 1 0 0 1 1 1 1 Ribosome recycling factor Methyltransf_33 PF10017.9 CQR52935.1 - 0.014 14.6 0.0 0.04 13.1 0.0 1.7 1 1 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Acetyltransf_10 PF13673.7 CQR52937.1 - 3.6e-14 52.8 0.0 4.6e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR52937.1 - 1.7e-08 34.8 0.1 2.6e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR52937.1 - 2e-08 34.5 0.1 2.5e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PanZ PF12568.8 CQR52937.1 - 0.0018 18.0 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 CQR52937.1 - 0.0076 16.4 0.0 0.016 15.3 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 CQR52937.1 - 0.024 14.8 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MFS_1 PF07690.16 CQR52939.1 - 3.5e-32 111.7 54.3 8.7e-24 84.1 37.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR52939.1 - 6.8e-05 21.9 16.2 6.8e-05 21.9 16.2 2.4 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_4 PF06779.14 CQR52939.1 - 0.017 14.5 40.4 0.028 13.7 40.4 1.3 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB TetR_N PF00440.23 CQR52941.1 - 2.3e-13 49.7 0.1 5e-13 48.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 CQR52941.1 - 0.0014 18.9 0.1 0.019 15.3 0.0 2.1 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 CQR52941.1 - 0.027 14.7 0.3 0.083 13.1 0.0 1.9 3 0 0 3 3 3 0 BetI-type transcriptional repressor, C-terminal TetR_C_13 PF16925.5 CQR52941.1 - 0.029 14.3 0.0 0.055 13.4 0.0 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Gemin7 PF11095.8 CQR52941.1 - 0.049 13.5 0.2 0.24 11.3 0.2 2.0 2 0 0 2 2 2 0 Gem-associated protein 7 (Gemin7) Methyltransf_25 PF13649.6 CQR52943.1 - 6.3e-08 33.2 0.0 1.2e-07 32.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR52943.1 - 3.2e-06 27.7 0.0 6.3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR52943.1 - 2.7e-05 24.0 0.1 4.8e-05 23.2 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR52943.1 - 0.0048 16.7 0.0 0.0092 15.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR52943.1 - 0.054 14.2 0.1 0.11 13.3 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 CQR52943.1 - 0.073 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DHQ_synthase PF01761.20 CQR52945.1 - 8e-88 294.0 0.0 1e-87 293.6 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 CQR52945.1 - 1.1e-06 28.6 0.0 2.1e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 CQR52945.1 - 0.0004 19.3 0.1 0.0025 16.7 0.0 2.1 2 2 0 2 2 2 1 Iron-containing alcohol dehydrogenase SBP_bac_1 PF01547.25 CQR52947.1 - 7.6e-15 55.6 17.4 7.6e-15 55.6 17.4 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR52949.1 - 6.5e-25 87.5 0.1 1.3e-24 86.5 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR52949.1 - 1.8e-19 69.7 0.0 4.5e-19 68.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR52949.1 - 2.2e-17 62.7 0.0 1.4e-09 37.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family His_kinase PF06580.13 CQR52951.1 - 3.2e-21 75.4 0.5 1e-20 73.8 0.5 1.9 1 0 0 1 1 1 1 Histidine kinase HAMP PF00672.25 CQR52951.1 - 1.3e-05 25.4 0.0 4.3e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR52951.1 - 0.00026 21.4 0.0 0.0009 19.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tetraspanin PF00335.20 CQR52951.1 - 0.085 12.5 0.3 0.64 9.7 0.0 2.1 2 0 0 2 2 2 0 Tetraspanin family HATPase_c_2 PF13581.6 CQR52951.1 - 0.11 12.5 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain BPD_transp_1 PF00528.22 CQR52953.1 - 2.2e-09 37.3 20.3 2.2e-09 37.3 20.3 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR52955.1 - 1.2e-10 41.5 31.3 4.3e-08 33.1 31.3 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4519 PF15012.6 CQR52955.1 - 0.49 10.6 1.3 25 5.1 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) SPC12 PF06645.13 CQR52959.1 - 0.015 15.4 0.2 0.04 14.0 0.2 1.7 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Nop10p PF04135.12 CQR52959.1 - 0.06 13.4 0.9 0.19 11.8 0.4 2.0 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family HypA PF01155.19 CQR52959.1 - 0.068 13.2 0.5 0.16 12.0 0.5 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 CQR52959.1 - 0.13 12.3 0.6 0.24 11.5 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cytochrom_C_asm PF01578.20 CQR52962.1 - 0.11 12.3 0.0 0.11 12.3 0.0 1.0 1 0 0 1 1 1 0 Cytochrome C assembly protein VWA PF00092.28 CQR52964.1 - 4.4e-19 69.4 1.2 8.6e-19 68.4 1.2 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 CQR52964.1 - 8.1e-14 52.2 0.2 2.2e-13 50.8 0.2 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 CQR52964.1 - 1e-06 28.8 0.1 2e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Sec23_trunk PF04811.15 CQR52964.1 - 0.036 13.6 0.1 0.072 12.7 0.1 1.4 1 0 0 1 1 1 0 Sec23/Sec24 trunk domain MGC-24 PF05283.11 CQR52964.1 - 0.13 12.7 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Tubulin_2 PF13809.6 CQR52966.1 - 3.5e-81 273.1 0.0 6.1e-81 272.3 0.0 1.4 1 0 0 1 1 1 1 Tubulin like DUF1932 PF09130.11 CQR52966.1 - 0.0062 16.5 0.0 2.7 8.0 0.0 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF1932) Tubulin PF00091.25 CQR52966.1 - 0.021 15.0 1.0 0.32 11.2 0.4 3.0 2 1 0 2 2 2 0 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 CQR52968.1 - 0.0034 16.6 0.0 0.006 15.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin like VWA PF00092.28 CQR52969.1 - 1.3e-22 80.9 2.2 1.8e-22 80.5 2.2 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 CQR52969.1 - 1.1e-16 61.4 1.0 1.8e-16 60.7 1.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 CQR52969.1 - 1.4e-12 47.8 0.1 1.9e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 CQR52969.1 - 9.4e-09 35.0 0.3 1.4e-08 34.4 0.3 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.9 CQR52969.1 - 4.1e-05 23.8 0.4 5.6e-05 23.3 0.4 1.2 1 0 0 1 1 1 1 vWA found in TerF C terminus DSX_dimer PF08828.10 CQR52969.1 - 0.21 11.3 0.7 0.95 9.2 0.3 2.0 2 0 0 2 2 2 0 Doublesex dimerisation domain Tfb4 PF03850.14 CQR52969.1 - 0.22 11.0 0.3 1.5 8.3 0.3 1.9 1 1 0 1 1 1 0 Transcription factor Tfb4 Rhomboid PF01694.22 CQR52969.1 - 1.3 9.0 11.8 0.053 13.5 5.1 1.9 2 0 0 2 2 2 0 Rhomboid family Dimer_Tnp_Tn5 PF02281.16 CQR52971.1 - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain AAA_14 PF13173.6 CQR52973.1 - 0.0048 16.9 0.0 0.24 11.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF463 PF04317.12 CQR52973.1 - 0.015 14.3 0.0 0.049 12.6 0.0 1.7 2 0 0 2 2 2 0 YcjX-like family, DUF463 RNA_helicase PF00910.22 CQR52973.1 - 0.021 15.2 0.1 0.53 10.7 0.0 2.5 2 1 0 2 2 2 0 RNA helicase FYDLN_acid PF09538.10 CQR52973.1 - 0.1 13.3 0.4 0.48 11.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) MMR_HSR1 PF01926.23 CQR52973.1 - 0.11 12.5 0.0 0.42 10.7 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 CQR52973.1 - 0.15 12.3 0.0 0.76 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 CQR52973.1 - 0.16 11.3 0.3 0.27 10.5 0.3 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DSBA PF01323.20 CQR52973.1 - 2.2 8.0 4.9 7.8 6.2 2.7 2.3 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Arabino_trans_N PF17689.1 CQR52977.1 - 1.1 9.5 12.3 3.5 7.8 3.2 2.2 1 1 1 2 2 2 0 Arabinosyltransferase concanavalin like domain Cuticle_1 PF08140.11 CQR52977.1 - 2.7 8.1 4.7 53 4.0 0.1 3.7 3 1 0 4 4 4 0 Crustacean cuticle protein repeat CBM_2 PF00553.19 CQR52977.1 - 3.9 7.8 9.0 1.4 9.2 1.8 2.2 1 1 0 2 2 2 0 Cellulose binding domain SLH PF00395.20 CQR52979.1 - 6.1e-28 96.6 8.8 9.1e-10 38.4 0.1 6.2 6 0 0 6 6 6 3 S-layer homology domain DUF4430 PF14478.6 CQR52979.1 - 2.5e-26 92.0 4.2 3e-14 53.4 0.1 3.7 3 0 0 3 3 3 3 Domain of unknown function (DUF4430) Prenyltrans PF00432.21 CQR52979.1 - 1.4e-15 56.7 1.4 0.034 13.9 0.0 5.0 5 0 0 5 5 5 4 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_N PF13249.6 CQR52979.1 - 1.3e-10 40.8 0.2 0.04 13.0 0.1 4.5 2 2 3 5 5 5 5 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 CQR52979.1 - 1.3e-09 37.6 0.8 0.0011 18.1 0.0 2.8 2 1 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 CQR52979.1 - 2.3e-07 30.1 0.2 0.021 13.9 0.0 2.5 2 0 0 2 2 2 2 A-macroglobulin TED domain bMG6 PF17962.1 CQR52979.1 - 0.0088 16.2 0.3 1.9 8.6 0.0 2.9 2 0 0 2 2 2 1 Bacterial macroglobulin domain 6 SpaA PF17802.1 CQR52979.1 - 0.012 15.9 16.2 0.02 15.2 1.2 3.3 3 0 0 3 3 3 0 Prealbumin-like fold domain ZU5 PF00791.20 CQR52979.1 - 0.014 15.7 0.0 0.043 14.2 0.0 1.8 1 0 0 1 1 1 0 ZU5 domain MetallophosN PF16371.5 CQR52979.1 - 0.035 14.4 2.1 3.1 8.1 0.2 2.8 2 0 0 2 2 2 0 N terminal of Calcineurin-like phosphoesterase DUF4430 PF14478.6 CQR52981.1 - 2.2e-18 66.6 0.1 3.5e-18 66.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) LPAM_1 PF08139.12 CQR52981.1 - 0.056 14.0 0.7 0.16 12.5 0.7 1.9 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site CbiQ PF02361.16 CQR52983.1 - 6.9e-10 38.9 15.1 6.9e-10 38.9 15.1 1.4 2 0 0 2 2 2 1 Cobalt transport protein EXS PF03124.14 CQR52983.1 - 2.1 7.6 12.8 6.1 6.1 0.0 2.4 1 1 1 3 3 3 0 EXS family ABC_tran PF00005.27 CQR52985.1 - 1.7e-51 174.3 0.0 2.4e-26 92.9 0.1 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR52985.1 - 1.2e-21 77.9 8.1 4e-08 33.4 0.1 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR52985.1 - 5.3e-11 42.4 0.4 0.0001 21.8 0.0 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 CQR52985.1 - 7.5e-07 29.7 0.1 0.012 16.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 CQR52985.1 - 3.1e-06 27.5 2.7 0.024 14.9 0.3 3.9 3 2 0 3 3 3 2 AAA domain AAA_16 PF13191.6 CQR52985.1 - 1.1e-05 25.8 3.1 0.11 12.9 0.1 3.0 2 1 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 CQR52985.1 - 1.8e-05 24.7 1.5 0.028 14.3 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 CQR52985.1 - 2.1e-05 24.2 1.0 0.012 15.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_28 PF13521.6 CQR52985.1 - 9.4e-05 22.7 0.7 0.24 11.6 0.2 2.8 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 CQR52985.1 - 9.6e-05 22.5 0.2 0.2 11.9 0.0 3.7 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CQR52985.1 - 0.00046 19.9 0.8 0.71 9.6 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.6 CQR52985.1 - 0.00061 20.3 0.1 0.48 10.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 CQR52985.1 - 0.007 16.4 0.0 3.1 7.9 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 CQR52985.1 - 0.0076 16.4 0.4 1.1 9.4 0.2 2.7 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 CQR52985.1 - 0.0084 15.9 0.1 0.067 12.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 CQR52985.1 - 0.011 16.1 0.1 1.9 8.9 0.1 2.4 2 0 0 2 2 2 0 RNA helicase Rad17 PF03215.15 CQR52985.1 - 0.016 15.1 1.2 3.7 7.4 0.0 2.6 3 0 0 3 3 2 0 Rad17 P-loop domain MobB PF03205.14 CQR52985.1 - 0.018 15.0 0.8 8.4 6.3 0.1 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 CQR52985.1 - 0.033 13.6 2.1 0.71 9.2 0.1 3.1 4 0 0 4 4 3 0 Bacterial TniB protein APS_kinase PF01583.20 CQR52985.1 - 0.043 13.7 0.2 2.4 8.1 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_PrkA PF08298.11 CQR52985.1 - 0.05 12.5 0.1 1 8.2 0.0 2.1 2 0 0 2 2 2 0 PrkA AAA domain AAA_25 PF13481.6 CQR52985.1 - 0.052 13.1 1.2 7.7 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 CQR52985.1 - 0.052 13.1 1.6 1.9 8.1 0.4 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 CQR52985.1 - 0.054 12.8 1.7 0.93 8.7 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 CQR52985.1 - 0.06 13.3 10.5 0.16 11.9 0.2 3.4 4 0 0 4 4 4 0 NACHT domain AAA_19 PF13245.6 CQR52985.1 - 0.064 13.6 2.0 9.3 6.6 0.3 2.7 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 CQR52985.1 - 0.073 12.1 0.3 1.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 CQR52985.1 - 0.076 12.8 0.6 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 CQR52985.1 - 0.097 12.4 1.4 4.1 7.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 CQR52985.1 - 0.13 11.9 1.4 8.7 5.9 0.0 2.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 CQR52985.1 - 0.27 11.1 0.8 20 5.0 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_13 PF13166.6 CQR52985.1 - 0.36 9.4 0.1 0.77 8.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 CQR52985.1 - 0.37 9.5 3.0 11 4.7 0.2 3.1 3 1 0 3 3 3 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 CQR52985.1 - 0.39 9.9 0.9 29 3.7 0.2 2.8 2 1 1 3 3 3 0 NB-ARC domain AAA PF00004.29 CQR52985.1 - 0.43 11.0 2.2 3.3 8.1 0.2 3.1 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 CQR52985.1 - 0.53 9.9 1.8 6.7 6.3 0.1 2.7 2 1 0 2 2 2 0 Thymidylate kinase Mg_chelatase PF01078.21 CQR52985.1 - 0.54 9.6 5.6 14 4.9 0.2 3.1 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 CQR52985.1 - 0.54 10.3 1.6 22 5.1 0.1 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 CQR52985.1 - 0.84 9.3 2.4 74 3.0 0.2 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_5 PF07728.14 CQR52985.1 - 0.89 9.6 4.6 0.79 9.7 0.6 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ECF-ribofla_trS PF07155.12 CQR52986.1 - 9.4e-12 45.3 13.7 1.5e-11 44.6 13.7 1.3 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 CQR52986.1 - 2.6e-10 40.7 16.4 2.6e-10 40.7 16.4 2.0 2 1 0 2 2 2 1 ECF transporter, substrate-specific component TOM6p PF15184.6 CQR52986.1 - 0.1 12.4 0.1 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Mitochondrial import receptor subunit TOM6 homolog DUF2070 PF09843.9 CQR52986.1 - 8.4 4.5 12.6 14 3.8 12.7 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) 4HB_MCP_1 PF12729.7 CQR52988.1 - 7.2e-28 97.4 6.9 7.2e-28 97.4 6.9 3.6 4 1 1 5 5 5 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 CQR52988.1 - 2.3e-10 40.7 1.1 8.5e-10 38.9 0.0 2.7 3 1 0 3 3 2 1 HAMP domain MCPsignal PF00015.21 CQR52988.1 - 0.0019 18.1 10.6 0.0019 18.1 10.6 4.4 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Glycophorin_A PF01102.18 CQR52988.1 - 0.0024 18.1 0.4 0.0024 18.1 0.4 2.6 1 1 0 2 2 2 1 Glycophorin A DUF5305 PF17231.2 CQR52988.1 - 0.024 14.0 1.8 0.039 13.4 0.2 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5305) Syntaxin-6_N PF09177.11 CQR52988.1 - 0.026 15.1 10.8 0.47 11.0 0.2 3.7 3 1 1 4 4 4 0 Syntaxin 6, N-terminal DUF948 PF06103.11 CQR52988.1 - 0.026 14.8 18.2 0.43 10.9 2.3 4.9 3 2 1 4 4 3 0 Bacterial protein of unknown function (DUF948) 7TM_GPCR_Sru PF10322.9 CQR52988.1 - 0.15 11.3 0.2 0.28 10.5 0.2 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Sru TMP_2 PF06791.13 CQR52988.1 - 0.81 9.3 34.4 0.067 12.9 22.3 2.4 1 1 1 2 2 2 0 Prophage tail length tape measure protein BBP1_C PF15272.6 CQR52988.1 - 0.83 9.5 5.2 0.68 9.7 0.6 2.6 2 1 0 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF3631 PF12307.8 CQR52988.1 - 0.87 9.8 4.2 0.38 10.9 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3631) AIP3 PF03915.13 CQR52988.1 - 1.6 7.8 15.3 0.88 8.6 8.3 2.3 1 1 1 2 2 2 0 Actin interacting protein 3 Fib_alpha PF08702.10 CQR52988.1 - 1.9 8.7 11.6 2.2 8.4 0.1 3.9 2 1 2 4 4 4 0 Fibrinogen alpha/beta chain family PhaP_Bmeg PF09602.10 CQR52988.1 - 7.4 6.5 9.1 0.43 10.5 1.4 2.9 3 1 0 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) PadR PF03551.14 CQR52990.1 - 1.8e-17 63.1 0.3 2.3e-17 62.7 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 CQR52990.1 - 0.11 12.6 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF1700 PF08006.11 CQR52992.1 - 3.9e-40 137.3 0.0 4.3e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1700) DUF4097 PF13349.6 CQR52994.1 - 4.3e-27 95.1 7.9 5.7e-27 94.7 7.9 1.2 1 0 0 1 1 1 1 Putative adhesin Tautomerase PF01361.21 CQR52994.1 - 0.051 13.5 0.2 0.13 12.2 0.1 1.8 2 0 0 2 2 2 0 Tautomerase enzyme ABC_tran PF00005.27 CQR52996.1 - 2e-32 112.5 0.0 3.3e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR52996.1 - 5.6e-14 52.6 0.1 3.6e-07 30.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR52996.1 - 1e-06 28.8 0.0 0.00019 21.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 CQR52996.1 - 1.1e-05 26.1 0.3 1.9e-05 25.3 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR52996.1 - 0.00024 21.5 0.0 0.00053 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR52996.1 - 0.00035 20.3 0.0 0.0007 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 CQR52996.1 - 0.0014 18.8 0.0 0.0071 16.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR52996.1 - 0.0026 17.7 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 CQR52996.1 - 0.0068 15.9 0.1 0.049 13.1 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR52996.1 - 0.013 15.3 0.0 0.036 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 CQR52996.1 - 0.014 15.6 0.1 0.051 13.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 CQR52996.1 - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA PF00004.29 CQR52996.1 - 0.13 12.6 0.0 0.55 10.7 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 CQR52996.1 - 0.13 12.8 0.1 0.22 12.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 CQR52996.1 - 0.18 10.6 0.1 0.26 10.1 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein KdpD PF02702.17 CQR52996.1 - 0.19 11.2 0.0 0.59 9.6 0.0 1.6 1 1 1 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain DUF2813 PF11398.8 CQR52996.1 - 0.2 10.9 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_13 PF13166.6 CQR52996.1 - 0.31 9.6 0.0 0.41 9.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain Campylo_MOMP PF05538.11 CQR52998.1 - 0.13 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Campylobacter major outer membrane protein ABC2_membrane_2 PF12679.7 CQR52998.1 - 0.9 8.8 29.6 0.69 9.1 20.7 3.2 2 1 0 2 2 2 0 ABC-2 family transporter protein COX4_pro PF03626.14 CQR53000.1 - 3.6e-10 40.1 6.4 5e-10 39.7 6.4 1.2 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV COX3 PF00510.18 CQR53002.1 - 1.9e-11 44.3 21.2 3.7e-11 43.4 21.2 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III COX1 PF00115.20 CQR53004.1 - 4.3e-143 477.3 72.1 4.3e-143 477.3 72.1 2.3 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I CcmE PF03100.15 CQR53004.1 - 0.12 12.4 0.0 0.61 10.1 0.0 2.2 1 0 0 1 1 1 0 CcmE COX2_TM PF02790.15 CQR53006.1 - 2.6e-06 27.5 1.6 4.7e-06 26.7 1.6 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain PalH PF08733.10 CQR53006.1 - 0.0021 17.1 2.0 0.0031 16.6 2.0 1.2 1 0 0 1 1 1 1 PalH/RIM21 COX2 PF00116.20 CQR53006.1 - 0.0053 16.6 0.2 0.071 13.0 0.0 2.1 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain DUF1980 PF09323.10 CQR53006.1 - 0.0057 16.6 0.5 0.013 15.4 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1980) 7tm_1 PF00001.21 CQR53006.1 - 0.0081 15.5 0.5 0.012 14.9 0.5 1.2 1 0 0 1 1 1 1 7 transmembrane receptor (rhodopsin family) Orf78 PF06024.12 CQR53006.1 - 0.012 15.9 2.5 0.012 15.9 2.5 1.9 1 1 1 2 2 2 0 Orf78 (ac78) DHHC PF01529.20 CQR53006.1 - 0.098 12.8 0.5 0.17 11.9 0.5 1.3 1 0 0 1 1 1 0 DHHC palmitoyltransferase PAF-AH_p_II PF03403.13 CQR53006.1 - 0.12 10.8 0.1 0.19 10.2 0.1 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF3754 PF12576.8 CQR53006.1 - 0.16 11.9 0.2 0.36 10.8 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) Syndecan PF01034.20 CQR53006.1 - 1 9.3 4.2 1.1 9.2 2.5 2.0 1 1 0 1 1 1 0 Syndecan domain DUF4006 PF13179.6 CQR53006.1 - 4.5 7.3 6.6 9.2 6.3 0.4 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF4006) Trypan_PARP PF05887.11 CQR53006.1 - 4.7 7.2 8.9 9.8 6.2 8.3 1.8 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) Polysacc_deac_1 PF01522.21 CQR53008.1 - 8.1e-32 109.7 0.0 2.3e-31 108.3 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide deacetylase Cu_amine_oxidN1 PF07833.11 CQR53008.1 - 0.0047 17.4 0.0 0.12 12.8 0.0 2.7 2 1 2 4 4 4 3 Copper amine oxidase N-terminal domain TetR_N PF00440.23 CQR53010.1 - 5.4e-16 58.1 0.2 1e-15 57.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_15 PF17918.1 CQR53010.1 - 1.2e-10 42.1 2.1 1.3e-10 42.0 1.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain MFS_1 PF07690.16 CQR53012.1 - 5.2e-54 183.5 50.1 4.2e-53 180.5 48.8 2.4 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR53012.1 - 1.9e-08 33.6 37.8 8e-07 28.3 16.0 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter PUCC PF03209.15 CQR53012.1 - 0.0001 21.4 10.8 0.0001 21.4 10.8 3.1 2 1 2 4 4 4 1 PUCC protein MFS_1_like PF12832.7 CQR53012.1 - 0.0052 15.7 11.7 0.0052 15.7 11.7 2.2 2 0 0 2 2 2 1 MFS_1 like family MFS_2 PF13347.6 CQR53012.1 - 0.11 11.0 39.7 0.053 12.1 13.3 3.4 2 1 2 4 4 4 0 MFS/sugar transport protein GntR PF00392.21 CQR53015.1 - 5.6e-17 61.2 0.5 8.7e-17 60.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 CQR53015.1 - 7e-06 25.9 0.0 1.4e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 CQR53015.1 - 0.00011 22.5 0.0 0.00017 21.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 CQR53015.1 - 0.00047 20.3 0.0 0.00095 19.3 0.0 1.6 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 CQR53015.1 - 0.00096 19.8 0.0 0.0017 19.0 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_11 PF08279.12 CQR53015.1 - 0.0011 18.8 0.0 0.0029 17.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 CQR53015.1 - 0.0039 17.0 0.1 0.1 12.5 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 CQR53015.1 - 0.0086 15.8 0.0 0.033 13.9 0.0 1.9 1 1 1 2 2 2 1 LexA DNA binding domain MarR PF01047.22 CQR53015.1 - 0.0093 15.9 0.0 0.017 15.0 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR53015.1 - 0.072 12.7 0.1 0.12 11.9 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_41 PF14502.6 CQR53015.1 - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.27 CQR53016.1 - 2.3e-22 80.0 0.0 1e-21 77.9 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR53016.1 - 3.6e-12 46.7 0.3 1.4e-05 25.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 CQR53016.1 - 0.013 15.2 0.3 0.027 14.2 0.3 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR53016.1 - 0.024 14.6 0.3 0.047 13.6 0.3 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 CQR53016.1 - 0.025 14.2 0.7 0.043 13.5 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 CQR53016.1 - 0.036 14.6 0.1 0.074 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 CQR53016.1 - 0.07 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 CQR53016.1 - 0.1 11.2 0.0 0.18 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR53016.1 - 0.1 12.3 0.2 0.2 11.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.19 CQR53016.1 - 0.11 12.1 0.4 0.19 11.3 0.4 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 CQR53016.1 - 0.13 12.6 0.1 0.45 10.9 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 CQR53016.1 - 0.21 11.5 0.6 0.58 10.1 0.2 1.8 2 0 0 2 2 2 0 NACHT domain SMC_N PF02463.19 CQR53016.1 - 0.23 10.9 0.6 4.6 6.6 0.1 2.5 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 CQR53016.1 - 0.25 11.4 0.4 2.8 8.0 0.1 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 CQR53016.1 - 0.32 11.2 1.2 0.61 10.3 0.2 1.8 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 CQR53018.1 - 0.12 11.7 8.3 0.21 10.9 8.3 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein RlaP PF10127.9 CQR53020.1 - 6.1e-86 288.0 0.0 6.8e-86 287.8 0.0 1.0 1 0 0 1 1 1 1 RNA repair pathway DNA polymerase beta family Polbeta PF18765.1 CQR53020.1 - 0.086 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Hen1_L PF12623.7 CQR53023.1 - 8.7e-59 198.5 0.0 1.2e-58 198.1 0.0 1.1 1 0 0 1 1 1 1 RNA repair, ligase-Pnkp-associating, region of Hen1 Methyltransf_23 PF13489.6 CQR53023.1 - 9.7e-06 25.5 0.0 2.8e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 CQR53023.1 - 0.0048 16.5 0.0 0.043 13.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 CQR53023.1 - 0.049 14.3 0.0 0.14 12.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_32 PF13679.6 CQR53023.1 - 0.13 12.3 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 CQR53023.1 - 0.17 12.7 0.0 0.75 10.6 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain PNKP_ligase PF16542.5 CQR53024.1 - 2.5e-117 391.9 0.0 3.5e-117 391.4 0.0 1.2 1 0 0 1 1 1 1 PNKP adenylyltransferase domain, ligase domain PNKP-ligase_C PF16536.5 CQR53024.1 - 9e-25 86.7 1.6 2e-24 85.6 1.6 1.7 1 0 0 1 1 1 1 PNKP adenylyltransferase domain, C-terminal region AAA_33 PF13671.6 CQR53024.1 - 1.4e-17 64.2 0.0 2.7e-17 63.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Metallophos PF00149.28 CQR53024.1 - 0.00014 22.4 0.2 0.00093 19.7 0.2 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase MMR_HSR1 PF01926.23 CQR53024.1 - 0.00041 20.4 0.0 0.00097 19.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.6 CQR53024.1 - 0.00051 20.6 0.0 0.0015 19.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR53024.1 - 0.0052 17.1 0.0 0.02 15.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR53024.1 - 0.0062 16.3 0.0 0.031 14.0 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain Roc PF08477.13 CQR53024.1 - 0.0069 16.6 0.0 0.036 14.3 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 CQR53024.1 - 0.0089 16.4 0.4 0.23 11.8 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain SRPRB PF09439.10 CQR53024.1 - 0.0089 15.5 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit MobB PF03205.14 CQR53024.1 - 0.01 15.8 0.1 0.024 14.5 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 CQR53024.1 - 0.011 16.2 0.0 0.025 15.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 CQR53024.1 - 0.024 14.6 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 CQR53024.1 - 0.037 14.3 0.7 0.12 12.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR53024.1 - 0.042 14.3 0.2 0.1 13.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.6 CQR53024.1 - 0.047 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 CQR53024.1 - 0.05 13.2 0.0 0.11 12.0 0.0 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 CQR53024.1 - 0.051 13.5 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_21 PF13304.6 CQR53024.1 - 0.064 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 CQR53024.1 - 0.08 12.5 0.1 1.5 8.4 0.0 2.7 2 1 1 3 3 3 0 AAA domain DNA_ligase_A_M PF01068.21 CQR53024.1 - 0.08 12.6 0.0 0.77 9.4 0.0 2.2 2 0 0 2 2 2 0 ATP dependent DNA ligase domain AAA_24 PF13479.6 CQR53024.1 - 0.11 12.3 0.0 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 CQR53024.1 - 0.17 11.7 0.0 0.43 10.3 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PTS_2-RNA PF01885.16 CQR53027.1 - 1.4e-32 113.2 0.0 1.6e-32 113.0 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 CQR53027.1 - 0.0058 16.2 0.0 0.0083 15.7 0.0 1.3 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain UDG PF03167.19 CQR53028.1 - 1.4e-19 70.6 0.0 1.6e-19 70.4 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribosomal_L35p PF01632.19 CQR53030.1 - 1.7 9.2 5.6 3.2 8.3 1.2 2.9 1 1 1 2 2 2 0 Ribosomal protein L35 Glycos_transf_4 PF00953.21 CQR53031.1 - 9.1e-39 133.0 18.2 9.1e-39 133.0 18.2 2.2 3 0 0 3 3 3 1 Glycosyl transferase family 4 TauE PF01925.19 CQR53031.1 - 0.0083 15.8 14.2 0.0083 15.8 14.2 3.4 1 1 1 4 4 4 1 Sulfite exporter TauE/SafE HAD_2 PF13419.6 CQR53033.1 - 4.9e-20 72.4 0.0 7.7e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR53033.1 - 4.8e-11 42.6 0.0 1e-10 41.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 CQR53033.1 - 6.6e-09 36.4 0.0 9.5e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR53033.1 - 6.3e-06 26.7 0.2 1.3e-05 25.7 0.2 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cu_amine_oxidN1 PF07833.11 CQR53035.1 - 0.00049 20.5 0.0 0.0012 19.3 0.0 1.7 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain DUF748 PF05359.11 CQR53035.1 - 0.14 12.3 0.0 0.52 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF748) Glyoxalase PF00903.25 CQR53037.1 - 3.5e-29 101.6 0.0 4.3e-14 52.8 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 CQR53037.1 - 0.0064 16.8 0.1 0.045 14.0 0.0 2.3 3 0 0 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Antibiotic_NAT PF02522.14 CQR53040.1 - 1.4e-66 224.4 0.0 1.7e-66 224.2 0.0 1.1 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase DHH PF01368.20 CQR53043.1 - 3.3e-31 107.5 0.6 7.3e-31 106.4 0.1 1.7 2 0 0 2 2 2 1 DHH family DHHA2 PF02833.14 CQR53043.1 - 2.3e-18 66.8 0.5 4.1e-18 65.9 0.5 1.4 1 0 0 1 1 1 1 DHHA2 domain TFIID_30kDa PF03540.13 CQR53043.1 - 0.071 13.1 0.0 0.25 11.3 0.0 1.9 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit Y_Y_Y PF07495.13 CQR53045.1 - 3.4e-05 23.7 1.4 7.2e-05 22.7 1.4 1.5 1 0 0 1 1 1 1 Y_Y_Y domain GBS_Bsp-like PF08481.10 CQR53045.1 - 0.0018 18.3 3.8 0.0039 17.3 3.8 1.5 1 0 0 1 1 1 1 GBS Bsp-like repeat EMP24_GP25L PF01105.24 CQR53045.1 - 0.0023 17.9 0.6 0.0037 17.2 0.6 1.4 1 0 0 1 1 1 1 emp24/gp25L/p24 family/GOLD DUF2861 PF11060.8 CQR53045.1 - 0.0029 17.2 0.7 0.0039 16.8 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2861) FlgD_ig PF13860.6 CQR53045.1 - 0.022 14.6 0.3 0.064 13.1 0.2 1.9 2 0 0 2 2 2 0 FlgD Ig-like domain P_proprotein PF01483.20 CQR53045.1 - 0.028 14.5 0.1 0.047 13.7 0.1 1.4 1 0 0 1 1 1 0 Proprotein convertase P-domain Cu_amine_oxidN1 PF07833.11 CQR53045.1 - 0.03 14.8 0.1 0.074 13.5 0.1 1.9 1 1 0 1 1 1 0 Copper amine oxidase N-terminal domain Myc_target_1 PF15179.6 CQR53045.1 - 0.076 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Myc target protein 1 Rrf2 PF02082.20 CQR53047.1 - 7.1e-18 64.7 0.1 1.4e-17 63.8 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 CQR53047.1 - 0.00014 21.4 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 CQR53047.1 - 0.016 14.8 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 CQR53047.1 - 0.082 12.8 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit Nitroreductase PF00881.24 CQR53049.1 - 3.5e-36 124.8 0.1 4.3e-36 124.5 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR53049.1 - 2.4e-14 53.4 1.6 6.4e-07 29.2 0.1 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase UvrC_HhH_N PF08459.11 CQR53049.1 - 0.056 13.3 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal Phage_holin_5_2 PF16079.5 CQR53049.1 - 0.085 13.2 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V Pirin PF02678.16 CQR53051.1 - 3.2e-30 104.3 0.1 8.3e-30 103.0 0.1 1.6 2 0 0 2 2 2 1 Pirin Pirin_C_2 PF17954.1 CQR53051.1 - 1.6e-20 73.0 0.0 2.7e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 CQR53051.1 - 1.4e-06 27.9 0.1 0.00026 20.7 0.1 2.5 2 0 0 2 2 2 2 Cupin domain Pirin_C PF05726.13 CQR53051.1 - 0.028 14.8 0.0 0.055 13.8 0.0 1.5 1 0 0 1 1 1 0 Pirin C-terminal cupin domain ELFV_dehydrog_N PF02812.18 CQR53055.1 - 4.2e-28 97.8 0.0 7.7e-28 97.0 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ELFV_dehydrog PF00208.21 CQR53055.1 - 1.8e-16 60.6 1.9 1.1e-08 35.1 0.1 2.3 1 1 1 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 CQR53055.1 - 0.0016 17.8 0.0 0.0044 16.4 0.0 1.8 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR53055.1 - 0.0032 17.7 0.1 0.018 15.3 0.2 2.2 2 1 0 2 2 2 1 TrkA-N domain adh_short_C2 PF13561.6 CQR53055.1 - 0.016 14.8 0.2 0.043 13.4 0.1 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase AdoHcyase_NAD PF00670.21 CQR53055.1 - 0.025 14.7 0.2 0.047 13.8 0.2 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UPF0146 PF03686.13 CQR53055.1 - 0.027 14.3 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) F420_oxidored PF03807.17 CQR53055.1 - 0.078 13.6 0.0 1.1 9.9 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 CQR53055.1 - 0.08 12.5 0.0 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pro_isomerase PF00160.21 CQR53058.1 - 5.9e-50 169.6 0.1 8.4e-50 169.1 0.1 1.2 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MFS_1 PF07690.16 CQR53061.1 - 2e-55 188.2 63.2 6.5e-40 137.1 31.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR53061.1 - 2.5e-15 56.0 21.5 5e-11 41.8 10.5 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 CQR53061.1 - 8.7e-10 38.0 21.4 1.1e-07 31.1 21.8 2.1 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 CQR53061.1 - 3.3e-08 32.8 28.3 2.1e-06 26.9 2.4 3.1 2 1 1 3 3 3 2 Sugar (and other) transporter BT1 PF03092.16 CQR53061.1 - 0.0042 15.4 0.0 0.0068 14.7 0.0 1.3 1 0 0 1 1 1 1 BT1 family Phage_holin_2_4 PF16082.5 CQR53061.1 - 0.0058 16.3 0.7 0.017 14.9 0.1 2.1 2 0 0 2 2 2 1 Bacteriophage holin family, superfamily II-like ATG22 PF11700.8 CQR53061.1 - 0.057 12.0 21.0 0.097 11.3 10.2 3.5 2 2 0 2 2 2 0 Vacuole effluxer Atg22 like Peptidase_A8 PF01252.18 CQR53061.1 - 0.14 12.4 11.6 0.63 10.3 1.8 3.0 2 1 1 3 3 3 0 Signal peptidase (SPase) II Voltage_CLC PF00654.20 CQR53063.1 - 1.7e-66 224.9 28.3 1.7e-66 224.9 28.3 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel HATPase_c PF02518.26 CQR53067.1 - 1.1e-21 77.5 0.1 1.9e-21 76.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR53067.1 - 7.2e-13 48.4 0.0 1.7e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain 7TMR-DISM_7TM PF07695.11 CQR53067.1 - 1.7e-06 28.1 30.5 1.7e-06 28.1 30.5 1.6 2 0 0 2 2 2 1 7TM diverse intracellular signalling HATPase_c_5 PF14501.6 CQR53067.1 - 2.9e-05 23.9 0.2 6.9e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 CQR53067.1 - 2.9e-05 24.0 0.0 4.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR53067.1 - 6.5e-05 22.8 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 CQR53067.1 - 0.12 12.1 0.1 0.34 10.7 0.1 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c PF02518.26 CQR53069.1 - 4e-19 69.2 0.1 7.8e-19 68.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR53069.1 - 1e-13 51.1 0.0 2.2e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR53069.1 - 6.3e-05 22.8 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR53069.1 - 0.0017 18.2 0.1 0.0032 17.3 0.1 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 CQR53069.1 - 0.0074 16.2 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain 7TMR-DISM_7TM PF07695.11 CQR53069.1 - 1.4 8.8 35.2 3.3 7.5 35.2 1.7 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF2678 PF10856.8 CQR53069.1 - 2.5 8.1 10.2 0.58 10.1 4.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) Baculo_11_kDa PF06143.11 CQR53069.1 - 3.9 7.1 9.3 0.96 9.1 1.4 3.1 3 0 0 3 3 3 0 Baculovirus 11 kDa family NHase_alpha PF02979.16 CQR53071.1 - 5.9e-10 38.7 0.1 3.9e-05 23.0 0.0 2.0 1 1 1 2 2 2 2 Nitrile hydratase, alpha chain Frankia_peptide PF14407.6 CQR53071.1 - 1.8e-05 24.6 0.0 2.2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Redoxin PF08534.10 CQR53071.1 - 0.0065 16.2 0.0 0.0077 15.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin PARP_reg PF02877.14 CQR53071.1 - 0.19 11.8 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain GFO_IDH_MocA PF01408.22 CQR53076.1 - 1.4e-08 35.5 0.0 2.5e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DUF5466 PF17554.2 CQR53079.1 - 6.9e-06 26.2 41.7 11 6.3 0.4 13.1 2 2 11 13 13 13 4 Family of unknown function (DUF5466) DNApol3-delta_C PF09115.10 CQR53079.1 - 0.005 17.3 6.9 28 5.3 0.1 5.1 1 1 5 8 8 8 1 DNA polymerase III, delta subunit, C terminal DUF4322 PF14210.6 CQR53079.1 - 0.14 12.1 0.2 27 4.7 0.0 4.6 3 1 4 7 7 7 0 Domain of unknown function (DUF4322) Gemin7 PF11095.8 CQR53079.1 - 3.9 7.4 15.7 41 4.2 0.2 7.3 6 2 3 9 9 9 0 Gem-associated protein 7 (Gemin7) LAT2 PF15703.5 CQR53079.1 - 5.2 6.9 7.5 1.5e+02 2.1 0.0 5.3 1 1 5 7 7 7 0 Linker for activation of T-cells family member 2 Glyco_hydro_20 PF00728.22 CQR53081.1 - 1.2e-19 71.0 0.0 1.6e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain Glyco_hydro_20b PF02838.15 CQR53081.1 - 2.9e-17 63.6 0.0 5.2e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 HTH_18 PF12833.7 CQR53082.1 - 2.6e-16 59.6 0.3 4e-16 59.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR53082.1 - 3.6e-14 52.8 0.0 6.4e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_AraC PF00165.23 CQR53082.1 - 7.3e-10 38.7 0.3 2.8e-09 36.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_3 PF05899.12 CQR53082.1 - 0.00013 21.5 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_2 PF07883.11 CQR53082.1 - 0.0015 18.2 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 Cupin domain HTH_23 PF13384.6 CQR53082.1 - 0.019 14.7 0.0 0.76 9.6 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain DUF3973 PF13119.6 CQR53084.1 - 0.0021 18.1 4.9 0.0045 17.1 4.9 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF3973) HisKA_3 PF07730.13 CQR53087.1 - 3.8e-11 43.3 0.8 9.8e-11 42.0 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR53087.1 - 9.6e-11 42.2 0.1 3.3e-10 40.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR53087.1 - 1.2e-05 25.3 0.0 2.2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 CQR53087.1 - 0.0086 15.8 0.1 0.031 14.0 0.1 2.0 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain DUF4118 PF13493.6 CQR53087.1 - 6.7 6.5 12.0 0.84 9.5 6.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) Response_reg PF00072.24 CQR53089.1 - 2e-19 69.8 0.1 3.2e-19 69.2 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR53089.1 - 9.3e-18 63.5 0.0 1.4e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR53089.1 - 7.1e-06 25.6 0.0 1.5e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR53089.1 - 0.00023 20.6 0.1 0.00052 19.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 CQR53089.1 - 0.031 13.8 0.0 0.089 12.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 CQR53089.1 - 0.08 12.8 0.0 6.3 6.7 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain 3HCDH_RFF PF18321.1 CQR53089.1 - 0.12 12.9 0.2 0.27 11.7 0.0 1.7 2 0 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Wzz PF02706.15 CQR53092.1 - 1.1e-10 41.6 0.6 1.1e-10 41.6 0.6 2.5 3 0 0 3 3 3 1 Chain length determinant protein PCO_ADO PF07847.12 CQR53092.1 - 0.17 11.3 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO AAA_31 PF13614.6 CQR53094.1 - 7.8e-12 45.5 0.0 1.3e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 CQR53094.1 - 3.3e-11 43.3 0.0 6.6e-11 42.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 CQR53094.1 - 3.2e-09 36.6 0.0 4.5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 CQR53094.1 - 3.1e-08 33.4 0.1 1.8e-07 30.9 0.1 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 CQR53094.1 - 6.4e-07 28.9 0.0 1.9e-06 27.4 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 CQR53094.1 - 0.0023 17.4 0.0 0.0055 16.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 CQR53094.1 - 0.0071 15.6 0.1 0.012 14.9 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.11 CQR53094.1 - 0.013 14.8 0.1 0.028 13.7 0.0 1.5 1 1 0 1 1 1 0 VirC1 protein AAA_25 PF13481.6 CQR53094.1 - 0.017 14.7 0.1 0.029 13.9 0.1 1.7 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 CQR53094.1 - 0.018 14.7 0.3 0.087 12.4 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 CQR53094.1 - 0.02 14.6 0.6 2.3 7.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 CQR53094.1 - 0.039 13.7 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 CQR53094.1 - 0.079 11.9 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FTHFS PF01268.19 CQR53094.1 - 0.12 10.5 0.0 0.17 10.1 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase NTP_transferase PF00483.23 CQR53095.1 - 1.3e-36 126.4 0.0 1.7e-36 126.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR53095.1 - 2.6e-07 31.1 0.0 3.7e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 CQR53095.1 - 0.0032 17.3 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 CQR53095.1 - 0.022 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 CTP_transf_3 PF02348.19 CQR53095.1 - 0.039 13.9 0.0 0.076 12.9 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase Smr PF01713.21 CQR53095.1 - 0.13 12.6 0.0 0.55 10.6 0.0 2.0 2 0 0 2 2 2 0 Smr domain Bac_transf PF02397.16 CQR53098.1 - 1.7e-69 233.1 0.1 2e-69 232.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase Glycos_transf_2 PF00535.26 CQR53100.1 - 1.7e-28 99.6 0.0 2.4e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR53100.1 - 2.6e-14 53.7 0.0 6.1e-14 52.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR53100.1 - 3.2e-06 26.8 0.0 4.4e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 CQR53100.1 - 0.00066 19.4 0.0 0.0013 18.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 CQR53100.1 - 0.044 14.3 0.0 0.086 13.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Wzy_C PF04932.15 CQR53102.1 - 6.1e-12 45.4 1.8 6.1e-12 45.4 1.8 4.7 2 2 2 4 4 4 3 O-Antigen ligase Glyco_tran_WecB PF03808.13 CQR53103.1 - 6.6e-64 214.9 0.0 8.6e-64 214.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family Wzy_C PF04932.15 CQR53106.1 - 1.1e-13 51.1 5.9 1.1e-13 51.1 5.9 4.2 2 2 1 3 3 3 2 O-Antigen ligase Polysacc_synt_3 PF13440.6 CQR53108.1 - 7e-19 68.1 13.8 1.2e-18 67.4 13.8 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 CQR53108.1 - 7.4e-13 48.5 41.6 1.2e-12 47.8 21.5 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 CQR53108.1 - 1.3e-08 35.0 7.8 1.3e-08 35.0 7.8 4.1 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 CQR53108.1 - 0.016 14.9 29.7 0.018 14.7 9.3 3.1 2 1 0 2 2 2 0 MatE Glycos_transf_2 PF00535.26 CQR53110.1 - 5.9e-15 55.5 0.1 9.5e-15 54.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 CQR53110.1 - 2.7e-05 24.6 0.0 7.1e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR53110.1 - 0.049 13.1 0.0 0.077 12.5 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 CQR53111.1 - 1.9e-34 118.6 0.0 1.3e-31 109.4 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR53111.1 - 1.7e-28 99.7 0.0 3.3e-27 95.5 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR53111.1 - 3.3e-21 76.0 0.0 1.5e-20 73.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR53111.1 - 1.4e-12 48.3 0.0 7.1e-12 46.1 0.0 2.1 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 CQR53111.1 - 0.017 15.5 0.0 0.038 14.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 CQR53113.1 - 1.3e-35 122.5 0.0 1.9e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR53113.1 - 2.2e-27 96.1 0.0 5.1e-27 94.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR53113.1 - 3.4e-13 49.9 0.1 5.4e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR53113.1 - 2.1e-10 41.3 0.1 4.8e-10 40.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 CQR53113.1 - 3.6e-09 36.9 0.0 7.7e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 CQR53113.1 - 3.9e-05 23.7 0.0 7.5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Herpes_UL33 PF03581.13 CQR53113.1 - 0.18 12.2 0.0 0.38 11.1 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus UL33-like protein Glycos_transf_1 PF00534.20 CQR53115.1 - 4.5e-27 94.7 0.0 1.8e-26 92.7 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR53115.1 - 9.8e-20 71.3 0.0 1.6e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR53115.1 - 4.7e-08 33.2 0.0 7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUF3987 PF13148.6 CQR53115.1 - 0.11 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Glyco_trans_1_2 PF13524.6 CQR53115.1 - 0.16 12.4 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 UDPG_MGDP_dh_N PF03721.14 CQR53117.1 - 3.1e-62 209.5 0.0 1.2e-61 207.6 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 CQR53117.1 - 3.7e-41 139.2 0.2 7.5e-41 138.3 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 CQR53117.1 - 1e-33 115.9 0.0 1.1e-30 106.1 0.0 2.7 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 CQR53117.1 - 7.1e-06 26.5 0.0 0.0099 16.4 0.0 3.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CQR53117.1 - 0.001 19.3 0.0 0.13 12.4 0.0 2.7 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 CQR53117.1 - 0.0013 18.6 0.0 0.0056 16.6 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 CQR53117.1 - 0.0016 18.4 0.0 0.0051 16.8 0.0 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 CQR53117.1 - 0.0038 16.9 0.0 0.013 15.2 0.0 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 CQR53117.1 - 0.014 14.7 0.0 0.035 13.4 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.19 CQR53117.1 - 0.13 11.6 0.0 0.32 10.3 0.0 1.6 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DpaA_N PF16924.5 CQR53117.1 - 0.15 12.2 0.0 8.5 6.5 0.0 2.6 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain NTP_transferase PF00483.23 CQR53118.1 - 2.2e-31 109.3 0.0 3.9e-31 108.5 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase MannoseP_isomer PF01050.18 CQR53118.1 - 5.8e-22 78.2 1.3 1.1e-21 77.3 1.3 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 CQR53118.1 - 1.2e-08 34.5 0.1 2.5e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 CQR53118.1 - 2.2e-05 24.1 0.0 4.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) NTP_transf_3 PF12804.7 CQR53118.1 - 0.00012 22.5 0.0 0.00023 21.6 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 CQR53118.1 - 0.00068 19.6 0.0 0.0025 17.7 0.0 1.9 2 0 0 2 2 2 1 AraC-like ligand binding domain EutQ PF06249.12 CQR53118.1 - 0.054 13.3 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Ppnp PF06865.11 CQR53118.1 - 0.065 13.6 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Pirin_C_2 PF17954.1 CQR53118.1 - 0.075 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain PA14 PF07691.12 CQR53120.1 - 2.7e-64 215.4 5.3 4.2e-32 111.0 0.3 2.6 3 0 0 3 3 3 2 PA14 domain Glyco_hydro_26 PF02156.15 CQR53120.1 - 1.1e-54 186.0 5.6 1.1e-54 186.0 5.6 2.3 3 0 0 3 3 3 1 Glycosyl hydrolase family 26 GLEYA PF10528.9 CQR53120.1 - 1.8e-12 47.5 1.9 2.9e-06 27.6 0.2 3.2 2 1 0 2 2 2 2 GLEYA domain SSB PF00436.25 CQR53120.1 - 0.0079 16.2 0.1 1.5 8.9 0.0 2.6 2 0 0 2 2 2 1 Single-strand binding protein family DUF1080 PF06439.11 CQR53120.1 - 0.01 16.0 0.0 0.36 10.9 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1080) Glyco_hydro_26 PF02156.15 CQR53122.1 - 4.9e-58 197.0 3.1 4.9e-58 197.0 3.1 2.0 2 1 0 2 2 2 1 Glycosyl hydrolase family 26 PA14 PF07691.12 CQR53122.1 - 9.5e-37 126.1 1.9 4.6e-36 123.8 0.3 2.1 2 0 0 2 2 2 1 PA14 domain GLEYA PF10528.9 CQR53122.1 - 5.7e-07 29.9 0.1 2.9e-06 27.6 0.1 2.3 1 1 0 1 1 1 1 GLEYA domain ABC2_membrane_3 PF12698.7 CQR53122.1 - 0.0043 16.2 0.1 1.8 7.6 0.1 2.1 2 0 0 2 2 2 2 ABC-2 family transporter protein DUF5599 PF18141.1 CQR53122.1 - 0.088 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5599) F5_F8_type_C PF00754.25 CQR53124.1 - 3.5e-18 65.9 0.8 7.4e-18 64.9 0.8 1.6 1 0 0 1 1 1 1 F5/8 type C domain CBM-like PF14683.6 CQR53124.1 - 2.4e-06 27.5 0.2 3.7e-05 23.7 0.1 2.8 2 1 0 2 2 2 1 Polysaccharide lyase family 4, domain III fn3 PF00041.21 CQR53124.1 - 0.04 14.3 0.0 0.13 12.7 0.0 1.9 2 0 0 2 2 2 0 Fibronectin type III domain DUF3999 PF13163.6 CQR53124.1 - 0.12 11.6 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3999) Na_H_Exchanger PF00999.21 CQR53126.1 - 5.3e-61 206.5 47.4 6.4e-61 206.2 47.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 CQR53126.1 - 2.3e-12 46.6 0.0 5.6e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain Ferritin PF00210.24 CQR53129.1 - 3.5e-30 104.8 0.2 3.9e-30 104.6 0.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain AIM24 PF01987.17 CQR53131.1 - 1.5e-09 38.0 0.0 3.9e-06 26.8 0.0 2.4 1 1 1 2 2 2 2 Mitochondrial biogenesis AIM24 APG6_N PF17675.1 CQR53133.1 - 7.5e-05 23.3 1.1 8.5e-05 23.1 1.1 1.1 1 0 0 1 1 1 1 Apg6 coiled-coil region DUF3450 PF11932.8 CQR53133.1 - 0.00032 20.1 4.2 0.00039 19.8 4.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) GAS PF13851.6 CQR53133.1 - 0.00058 19.3 8.3 0.00088 18.7 8.3 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DUF812 PF05667.11 CQR53133.1 - 0.0012 17.8 4.6 0.0015 17.5 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF812) COG6 PF06419.11 CQR53133.1 - 0.0014 16.9 2.6 0.0017 16.6 2.6 1.0 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 Spc7 PF08317.11 CQR53133.1 - 0.0015 17.5 5.9 0.0017 17.3 5.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein DivIC PF04977.15 CQR53133.1 - 0.0016 18.2 12.5 0.011 15.5 8.9 2.3 1 1 1 2 2 2 1 Septum formation initiator MbeD_MobD PF04899.12 CQR53133.1 - 0.0022 18.1 8.8 0.0035 17.4 8.8 1.4 1 0 0 1 1 1 1 MbeD/MobD like DUF1664 PF07889.12 CQR53133.1 - 0.0027 17.7 0.8 0.0038 17.2 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) GrpE PF01025.19 CQR53133.1 - 0.0031 17.2 1.2 0.0043 16.7 1.2 1.2 1 0 0 1 1 1 1 GrpE HemX PF04375.14 CQR53133.1 - 0.0037 16.6 4.8 0.0045 16.3 4.8 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase Prominin PF05478.11 CQR53133.1 - 0.0058 14.7 0.2 0.0074 14.3 0.2 1.1 1 0 0 1 1 1 1 Prominin HIP1_clath_bdg PF16515.5 CQR53133.1 - 0.0069 17.0 7.8 0.0097 16.5 7.8 1.2 1 0 0 1 1 1 1 Clathrin-binding domain of Huntingtin-interacting protein 1 UPF0242 PF06785.11 CQR53133.1 - 0.0089 16.2 3.1 0.011 15.9 3.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF4407 PF14362.6 CQR53133.1 - 0.0089 15.4 2.0 0.011 15.1 2.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DUF3810 PF12725.7 CQR53133.1 - 0.0092 15.4 0.5 0.011 15.2 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3810) CHD5 PF04420.14 CQR53133.1 - 0.0092 15.9 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 CHD5-like protein Synaptobrevin PF00957.21 CQR53133.1 - 0.011 15.5 0.4 0.022 14.5 0.4 1.5 1 0 0 1 1 1 0 Synaptobrevin ZapB PF06005.12 CQR53133.1 - 0.012 16.0 15.3 0.28 11.7 5.6 2.2 1 1 1 2 2 2 0 Cell division protein ZapB DUF724 PF05266.14 CQR53133.1 - 0.015 15.2 0.9 0.019 14.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF4201 PF13870.6 CQR53133.1 - 0.016 14.9 5.4 0.023 14.5 5.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Fzo_mitofusin PF04799.13 CQR53133.1 - 0.016 14.7 3.5 0.025 14.1 3.5 1.2 1 0 0 1 1 1 0 fzo-like conserved region IFT57 PF10498.9 CQR53133.1 - 0.017 14.1 7.1 0.022 13.8 7.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Phlebovirus_NSM PF07246.11 CQR53133.1 - 0.019 14.3 2.1 0.17 11.3 1.9 1.9 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Laminin_II PF06009.12 CQR53133.1 - 0.023 14.7 2.4 0.029 14.4 2.4 1.1 1 0 0 1 1 1 0 Laminin Domain II RecG_N PF17190.4 CQR53133.1 - 0.023 15.4 1.2 0.04 14.6 1.1 1.6 1 1 0 1 1 1 0 RecG N-terminal helical domain YabA PF06156.13 CQR53133.1 - 0.024 15.3 5.2 0.036 14.7 5.2 1.3 1 0 0 1 1 1 0 Initiation control protein YabA SesA PF17107.5 CQR53133.1 - 0.024 14.8 0.7 0.032 14.4 0.7 1.2 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases CENP-H PF05837.12 CQR53133.1 - 0.032 14.6 8.7 0.077 13.4 8.9 1.5 1 1 1 2 2 2 0 Centromere protein H (CENP-H) SseC PF04888.12 CQR53133.1 - 0.038 13.6 3.0 0.048 13.3 3.0 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family RRP36 PF06102.12 CQR53133.1 - 0.04 13.9 3.6 0.051 13.5 3.6 1.1 1 0 0 1 1 1 0 rRNA biogenesis protein RRP36 DUF883 PF05957.13 CQR53133.1 - 0.04 14.5 0.1 0.063 13.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) ING PF12998.7 CQR53133.1 - 0.043 14.4 2.5 0.061 13.9 2.5 1.2 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding FliJ PF02050.16 CQR53133.1 - 0.047 13.9 12.5 0.064 13.5 12.5 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein ADIP PF11559.8 CQR53133.1 - 0.048 13.8 9.0 0.063 13.4 9.0 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding dCache_3 PF14827.6 CQR53133.1 - 0.052 13.2 5.5 0.072 12.7 5.5 1.2 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase FUSC PF04632.12 CQR53133.1 - 0.053 12.1 0.1 0.058 11.9 0.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family FapA PF03961.13 CQR53133.1 - 0.056 12.0 0.5 0.064 11.9 0.5 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A Internalin_N PF12354.8 CQR53133.1 - 0.083 13.0 0.6 3.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Bacterial adhesion/invasion protein N terminal ketoacyl-synt PF00109.26 CQR53133.1 - 0.095 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Beta-ketoacyl synthase, N-terminal domain OmpH PF03938.14 CQR53133.1 - 0.11 12.9 9.7 0.16 12.3 9.7 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) 5_nucleotid PF05761.14 CQR53133.1 - 0.17 10.8 4.2 0.22 10.4 4.2 1.1 1 0 0 1 1 1 0 5' nucleotidase family Seryl_tRNA_N PF02403.22 CQR53133.1 - 0.37 11.0 6.3 0.75 10.1 6.3 1.5 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TMPIT PF07851.13 CQR53133.1 - 0.64 9.2 6.7 0.8 8.9 6.1 1.4 1 1 0 1 1 1 0 TMPIT-like protein UPF0449 PF15136.6 CQR53133.1 - 0.76 10.3 9.4 1.9 9.0 2.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 DUF948 PF06103.11 CQR53133.1 - 2 8.7 6.4 0.18 12.1 1.4 1.8 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF948) Sec20 PF03908.13 CQR53133.1 - 3.1 7.8 6.1 4.2 7.3 0.6 2.2 1 1 1 2 2 2 0 Sec20 Tho2 PF11262.8 CQR53133.1 - 8.5 5.5 8.4 13 4.9 7.8 1.5 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Peptidase_M50B PF13398.6 CQR53135.1 - 2.6e-35 121.9 19.2 3.1e-35 121.6 19.2 1.0 1 0 0 1 1 1 1 Peptidase M50B-like DUF4344 PF14247.6 CQR53135.1 - 0.15 11.7 0.1 0.2 11.3 0.1 1.1 1 0 0 1 1 1 0 Putative metallopeptidase DHHC PF01529.20 CQR53135.1 - 6.7 6.8 8.1 1.8 8.6 0.2 2.6 2 1 0 2 2 2 0 DHHC palmitoyltransferase HalX PF08663.10 CQR53137.1 - 0.022 15.1 0.6 0.022 15.1 0.6 1.9 3 0 0 3 3 3 0 HalX domain WYL PF13280.6 CQR53140.1 - 1.5e-24 86.9 0.3 3.5e-24 85.8 0.3 1.5 2 0 0 2 2 2 1 WYL domain HTH_11 PF08279.12 CQR53140.1 - 3.1e-08 33.4 0.0 5.5e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR53140.1 - 0.00071 19.1 0.1 0.0013 18.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 CQR53140.1 - 0.0048 16.6 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 CQR53140.1 - 0.076 12.8 1.3 0.17 11.8 0.2 2.1 2 0 0 2 2 2 0 Homeodomain-like domain RNase_HII PF01351.18 CQR53140.1 - 0.14 12.0 0.1 0.44 10.3 0.0 1.7 2 0 0 2 2 2 0 Ribonuclease HII ABC_tran PF00005.27 CQR53142.1 - 2.5e-26 92.8 0.0 3.7e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR53142.1 - 5.4e-22 78.1 0.0 9.9e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR53142.1 - 9.1e-05 22.0 0.0 0.00019 21.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR53142.1 - 0.00019 21.3 0.1 0.00019 21.3 0.1 1.6 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR53142.1 - 0.038 14.3 1.1 1 9.6 1.1 2.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 CQR53144.1 - 7e-33 114.0 0.0 1e-32 113.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR53144.1 - 4.6e-18 65.5 0.1 8.3e-18 64.7 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 CQR53144.1 - 0.0026 18.2 0.0 0.0058 17.0 0.1 1.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 CQR53144.1 - 0.0047 17.2 0.1 0.016 15.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 CQR53144.1 - 0.0056 16.4 0.0 0.0084 15.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_21 PF13304.6 CQR53144.1 - 0.01 15.7 0.1 0.44 10.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53144.1 - 0.031 13.7 0.3 0.17 11.3 0.3 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AIG1 PF04548.16 CQR53144.1 - 0.061 12.6 0.0 0.09 12.1 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_13 PF13166.6 CQR53144.1 - 0.077 11.6 1.0 1.2 7.7 0.5 2.4 1 1 2 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 CQR53144.1 - 0.083 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 CQR53144.1 - 0.088 12.4 0.0 0.54 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR53144.1 - 0.12 12.4 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 CQR53144.1 - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MtrB PF05440.12 CQR53144.1 - 0.18 12.2 0.0 0.37 11.2 0.0 1.4 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B SBP_bac_5 PF00496.22 CQR53146.1 - 1.2e-112 376.7 10.1 1.4e-112 376.4 10.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle LPAM_1 PF08139.12 CQR53146.1 - 0.31 11.6 0.7 0.65 10.6 0.7 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.22 CQR53149.1 - 1.1e-44 152.4 14.3 1.1e-44 152.4 14.3 1.8 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3995 PF13160.6 CQR53149.1 - 0.018 15.4 0.6 0.018 15.4 0.6 2.5 3 1 0 3 3 3 0 Protein of unknown function (DUF3995) DUF2157 PF09925.9 CQR53149.1 - 0.22 11.3 8.9 4 7.2 0.0 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2157) BPD_transp_1 PF00528.22 CQR53151.1 - 6.5e-32 110.8 9.1 6.5e-32 110.8 9.1 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR53151.1 - 1.8e-18 66.2 0.4 1.8e-18 66.2 0.4 3.5 3 0 0 3 3 3 2 N-terminal TM domain of oligopeptide transport permease C SBP_bac_11 PF13531.6 CQR53154.1 - 4.9e-47 160.6 3.4 5.7e-47 160.4 3.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR53154.1 - 4.3e-24 86.0 7.2 2.3e-22 80.4 7.2 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 CQR53154.1 - 6.3e-05 22.7 0.5 8.3e-05 22.3 0.5 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like_2 PF12849.7 CQR53154.1 - 0.00081 19.1 4.0 0.0014 18.4 0.3 2.1 1 1 1 2 2 2 1 PBP superfamily domain SBP_bac_3 PF00497.20 CQR53154.1 - 0.022 14.2 2.5 0.021 14.3 1.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.20 CQR53154.1 - 0.054 12.9 0.0 0.21 10.9 0.0 2.0 2 1 0 2 2 2 0 LysR substrate binding domain BPD_transp_1 PF00528.22 CQR53156.1 - 6.5e-20 71.6 12.1 6.5e-20 71.6 12.1 1.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Cation_ATPase_N PF00690.26 CQR53156.1 - 0.16 11.7 0.2 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus Sigma70_r2 PF04542.14 CQR53157.1 - 2.5e-18 65.6 2.1 4.3e-18 64.9 2.1 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR53157.1 - 7.2e-13 48.0 0.0 1.4e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR53157.1 - 1.5e-10 40.4 0.0 9.9e-10 37.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR53157.1 - 0.035 13.9 0.0 3.6 7.5 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_16 PF12645.7 CQR53157.1 - 0.074 13.1 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PLDc_N PF13396.6 CQR53161.1 - 8.6e-05 22.4 0.7 8.6e-05 22.4 0.7 2.3 3 0 0 3 3 3 1 Phospholipase_D-nuclease N-terminal Bax1-I PF01027.20 CQR53161.1 - 0.0064 16.4 6.4 0.008 16.0 6.4 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 UPF0547 PF10571.9 CQR53161.1 - 0.024 14.7 2.0 0.049 13.7 2.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 ABC2_membrane_2 PF12679.7 CQR53161.1 - 0.04 13.2 3.1 0.045 13.0 3.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein zf-ribbon_3 PF13248.6 CQR53161.1 - 0.071 12.5 0.2 0.099 12.1 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon domain SirB PF04247.12 CQR53161.1 - 0.52 10.4 7.9 0.81 9.8 7.9 1.3 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB UPF0093 PF03653.13 CQR53161.1 - 0.67 10.2 9.7 0.14 12.4 3.7 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0093) DUF4131 PF13567.6 CQR53161.1 - 1.7 8.3 6.2 0.61 9.7 2.4 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) zf-LITAF-like PF10601.9 CQR53161.1 - 4.2 7.7 13.7 4.3 7.7 0.4 3.3 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain CopC PF04234.12 CQR53162.1 - 0.11 13.5 0.1 0.16 13.0 0.1 1.2 1 0 0 1 1 1 0 CopC domain PBP_like PF12727.7 CQR53164.1 - 1e-56 191.1 0.0 1.3e-56 190.8 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain HTH_17 PF12728.7 CQR53164.1 - 1.6e-14 53.8 0.1 2.9e-14 53.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain SBP_bac_11 PF13531.6 CQR53164.1 - 5.4e-07 29.6 0.0 8.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Polysacc_deac_1 PF01522.21 CQR53166.1 - 1.8e-33 115.1 0.0 2.9e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Polysacc_deac_2 PF04748.13 CQR53166.1 - 0.0034 16.6 0.0 0.0062 15.7 0.0 1.4 1 0 0 1 1 1 1 Divergent polysaccharide deacetylase HD_assoc PF13286.6 CQR53168.1 - 1.3e-20 73.7 0.3 5.5e-20 71.7 0.1 2.1 2 0 0 2 2 2 1 Phosphohydrolase-associated domain HD PF01966.22 CQR53168.1 - 2e-13 50.7 0.0 7.1e-13 48.9 0.0 2.0 1 1 0 1 1 1 1 HD domain Glyco_hydro_26 PF02156.15 CQR53170.1 - 6.3e-51 173.6 0.1 1.2e-50 172.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 SLH PF00395.20 CQR53170.1 - 5.1e-28 96.8 4.9 5.1e-12 45.6 0.0 3.9 3 1 0 3 3 3 3 S-layer homology domain CBM27 PF09212.10 CQR53170.1 - 1.4e-08 35.2 0.1 3e-08 34.1 0.1 1.5 1 0 0 1 1 1 1 Carbohydrate binding module 27 CBM_11 PF03425.13 CQR53170.1 - 5.7e-08 32.8 0.9 1.7e-07 31.3 0.9 1.8 1 0 0 1 1 1 1 Carbohydrate binding domain (family 11) Big_7 PF17957.1 CQR53170.1 - 0.002 18.8 0.1 0.012 16.3 0.1 2.5 1 0 0 1 1 1 1 Bacterial Ig domain RibD_C PF01872.17 CQR53173.1 - 3.4e-19 69.5 0.0 8e-19 68.2 0.0 1.5 1 1 0 1 1 1 1 RibD C-terminal domain 2-Hacid_dh_C PF02826.19 CQR53174.1 - 7.7e-54 181.7 0.0 1e-53 181.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 CQR53174.1 - 3.2e-10 39.8 0.0 4e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 CQR53174.1 - 0.12 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.27 CQR53174.1 - 0.17 12.5 0.0 0.36 11.4 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase LigT_PEase PF02834.16 CQR53175.1 - 6.2e-24 84.0 0.0 3.3e-14 52.8 0.0 2.2 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 CQR53175.1 - 3.1e-15 56.4 0.0 3.9e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 CQR53175.1 - 4.8e-05 23.3 0.0 5.8e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CCDC85 PF10226.9 CQR53175.1 - 0.22 11.2 0.0 0.38 10.4 0.0 1.3 1 0 0 1 1 1 0 CCDC85 family Hydrolase_2 PF07486.12 CQR53177.1 - 1.6e-24 86.8 0.0 1.6e-24 86.8 0.0 2.2 2 1 0 2 2 2 1 Cell Wall Hydrolase MGDG_synth PF06925.11 CQR53179.1 - 1.2e-26 93.9 0.0 1.6e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Monogalactosyldiacylglycerol (MGDG) synthase Glyco_tran_28_C PF04101.16 CQR53179.1 - 2.3e-07 30.9 0.0 3.6e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyphos_transf PF04464.14 CQR53179.1 - 0.015 14.3 0.0 0.025 13.5 0.0 1.3 1 0 0 1 1 1 0 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Glyco_trans_1_4 PF13692.6 CQR53179.1 - 0.049 14.1 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 TetR_N PF00440.23 CQR53181.1 - 8.5e-16 57.5 0.1 1.6e-15 56.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 CQR53181.1 - 0.007 16.6 0.2 0.018 15.3 0.0 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain ABC2_membrane_3 PF12698.7 CQR53184.1 - 2.5e-30 105.8 16.8 2.1e-16 60.0 14.3 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein DUF3533 PF12051.8 CQR53184.1 - 1.3e-14 53.9 9.5 1.3e-09 37.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3533) ABC2_membrane PF01061.24 CQR53184.1 - 1.1e-08 34.8 18.8 1.1e-08 34.8 18.8 2.1 2 1 0 2 2 2 1 ABC-2 type transporter APG6_N PF17675.1 CQR53184.1 - 0.058 13.9 0.5 3.1 8.3 0.7 2.5 3 0 0 3 3 3 0 Apg6 coiled-coil region ZapB PF06005.12 CQR53184.1 - 0.19 12.2 1.4 8.2 6.9 2.1 2.9 3 0 0 3 3 3 0 Cell division protein ZapB GCN5L1 PF06320.13 CQR53184.1 - 0.24 11.6 1.6 5.4 7.2 0.7 2.6 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF1664 PF07889.12 CQR53184.1 - 0.43 10.6 2.4 3.5 7.7 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) Sec20 PF03908.13 CQR53184.1 - 0.71 9.8 4.3 17 5.4 0.0 4.4 3 2 1 4 4 4 0 Sec20 ApoLp-III PF07464.11 CQR53184.1 - 1.3 9.1 11.7 0.29 11.2 2.8 3.4 1 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) GATase_2 PF00310.21 CQR53186.1 - 2.8e-190 632.5 0.0 3.6e-190 632.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 CQR53186.1 - 8.5e-156 518.7 0.0 1.4e-152 508.1 0.0 3.0 3 0 0 3 3 3 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 CQR53186.1 - 2e-118 394.9 0.0 1.2e-116 389.1 0.0 2.2 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 CQR53186.1 - 1.9e-87 291.8 4.9 3e-87 291.1 4.9 1.3 1 0 0 1 1 1 1 GXGXG motif Tti2 PF10521.9 CQR53186.1 - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Tti2 family ABC_tran PF00005.27 CQR53190.1 - 1.2e-27 97.1 0.0 1.7e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR53190.1 - 2.1e-13 50.8 0.2 1.7e-08 34.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR53190.1 - 0.0026 17.6 0.0 0.71 9.5 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 CQR53190.1 - 0.011 16.2 0.2 0.019 15.5 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 CQR53190.1 - 0.044 14.1 0.2 5.1 7.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 CQR53190.1 - 0.062 13.6 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CQR53190.1 - 0.14 11.9 0.0 0.49 10.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 CQR53193.1 - 2.1e-17 63.3 28.6 9.6e-17 61.2 28.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR53193.1 - 4.4e-17 62.6 15.3 4.4e-17 62.6 15.3 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF2705 PF10920.8 CQR53193.1 - 0.00066 19.1 10.8 0.00066 19.1 10.8 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF2705) ABC2_membrane_3 PF12698.7 CQR53193.1 - 0.081 12.0 40.0 0.24 10.5 32.1 2.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR53193.1 - 0.096 12.2 31.8 2.2 7.8 31.8 3.2 1 1 0 1 1 1 0 ABC-2 family transporter protein UL42 PF17638.2 CQR53193.1 - 0.45 10.5 4.8 2.9 7.9 0.2 2.7 2 1 0 2 2 2 0 HCMV UL42 Bactofilin PF04519.13 CQR53195.1 - 1.2e-24 86.5 4.0 1.5e-24 86.2 4.0 1.1 1 0 0 1 1 1 1 Polymer-forming cytoskeletal DUF2572 PF10833.8 CQR53195.1 - 0.25 11.1 0.6 0.65 9.7 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2572) Peptidase_M23 PF01551.22 CQR53197.1 - 1e-32 112.2 0.4 2e-32 111.3 0.4 1.5 1 0 0 1 1 1 1 Peptidase family M23 AIP3 PF03915.13 CQR53197.1 - 0.0037 16.4 1.1 0.0055 15.9 1.1 1.2 1 0 0 1 1 1 1 Actin interacting protein 3 Laminin_II PF06009.12 CQR53197.1 - 0.0053 16.8 4.8 0.0053 16.8 4.8 2.4 2 0 0 2 2 2 1 Laminin Domain II ERM PF00769.19 CQR53197.1 - 0.0063 16.4 2.3 0.0063 16.4 2.3 2.0 2 0 0 2 2 2 1 Ezrin/radixin/moesin family AadA_C PF18280.1 CQR53197.1 - 0.016 15.3 0.8 0.28 11.3 0.1 2.5 1 1 1 2 2 2 0 Aminoglycoside adenyltransferase C-terminal domain BLOC1_2 PF10046.9 CQR53197.1 - 0.023 15.0 3.0 0.023 15.0 3.0 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lipoprotein_20 PF13942.6 CQR53197.1 - 0.024 14.6 3.5 0.046 13.6 3.5 1.4 1 0 0 1 1 1 0 YfhG lipoprotein SlyX PF04102.12 CQR53197.1 - 0.037 14.7 3.7 0.15 12.7 3.7 2.0 1 0 0 1 1 1 0 SlyX FliD_N PF02465.18 CQR53197.1 - 0.052 14.2 13.0 0.62 10.8 6.9 2.5 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus NPV_P10 PF05531.12 CQR53197.1 - 0.1 13.1 4.6 0.2 12.1 2.3 2.4 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 CQR53197.1 - 0.44 10.6 8.1 0.19 11.8 3.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) TolA_bind_tri PF16331.5 CQR53197.1 - 0.54 10.4 6.3 2 8.6 6.3 1.9 1 1 0 1 1 1 0 TolA binding protein trimerisation UPF0242 PF06785.11 CQR53197.1 - 0.59 10.2 9.6 0.061 13.4 3.9 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 CQR53197.1 - 0.67 9.2 9.6 0.13 11.5 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Allexi_40kDa PF05549.11 CQR53197.1 - 0.91 9.0 6.9 1.2 8.6 4.0 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein EzrA PF06160.12 CQR53197.1 - 0.99 7.5 8.5 1 7.5 3.4 2.0 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DivIVA PF05103.13 CQR53197.1 - 1 9.4 10.4 3.6 7.7 2.9 2.3 2 0 0 2 2 2 0 DivIVA protein CdvA PF18822.1 CQR53197.1 - 1.2 9.0 12.7 0.85 9.5 3.0 2.7 2 1 0 2 2 2 0 CdvA-like coiled-coil domain Nop14 PF04147.12 CQR53197.1 - 1.3 7.2 9.5 0.34 9.1 0.5 2.0 2 0 0 2 2 2 0 Nop14-like family Tup_N PF08581.10 CQR53197.1 - 1.7 9.0 8.5 4.6 7.6 3.8 2.3 2 0 0 2 2 2 0 Tup N-terminal DUF2203 PF09969.9 CQR53197.1 - 1.8 9.3 5.8 13 6.5 0.9 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) COG2 PF06148.11 CQR53197.1 - 1.9 8.6 8.5 7.7 6.6 0.9 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 SHE3 PF17078.5 CQR53197.1 - 1.9 8.1 11.3 0.059 13.1 4.5 1.8 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 HAUS6_N PF14661.6 CQR53197.1 - 2.6 7.6 8.7 2.1 7.9 3.6 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF4201 PF13870.6 CQR53197.1 - 2.8 7.6 12.8 0.18 11.5 4.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) MCU PF04678.13 CQR53197.1 - 3.8 7.6 7.5 7.6 6.6 3.3 2.1 2 0 0 2 2 2 0 Mitochondrial calcium uniporter TAN PF11640.8 CQR53197.1 - 4 7.5 8.4 1.1 9.4 4.2 1.9 2 0 0 2 2 2 0 Telomere-length maintenance and DNA damage repair TMPIT PF07851.13 CQR53197.1 - 4.3 6.5 6.7 2.2 7.5 2.5 2.0 2 0 0 2 2 2 0 TMPIT-like protein Fmp27_WPPW PF10359.9 CQR53197.1 - 4.7 6.0 7.9 2 7.2 4.0 1.8 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain FapA PF03961.13 CQR53197.1 - 4.7 5.7 6.0 0.83 8.2 1.5 1.8 2 0 0 2 2 2 0 Flagellar Assembly Protein A Spc7 PF08317.11 CQR53197.1 - 5.9 5.7 13.5 1.8 7.4 6.2 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein FTA4 PF13093.6 CQR53197.1 - 8 6.3 9.3 2.6 7.9 4.5 2.0 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 YabA PF06156.13 CQR53197.1 - 8.1 7.1 8.0 8.5 7.1 3.6 2.4 2 1 0 2 2 2 0 Initiation control protein YabA zf-CpG_bind_C PF12269.8 CQR53197.1 - 9.2 6.0 7.9 17 5.1 2.3 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain PLDc_2 PF13091.6 CQR53199.1 - 4.5e-44 149.6 0.0 1.1e-26 93.3 0.0 2.5 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 CQR53199.1 - 1.7e-15 56.4 4.0 4.8e-07 29.7 0.7 2.9 3 0 0 3 3 3 2 Phospholipase D Active site motif PLDc_N PF13396.6 CQR53199.1 - 1.6e-07 31.1 2.9 3.2e-07 30.2 2.9 1.5 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal YitT_membrane PF02588.15 CQR53201.1 - 1.8e-68 230.0 19.9 2.5e-68 229.5 19.9 1.2 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2179 PF10035.9 CQR53201.1 - 8.4e-22 76.7 0.1 1.5e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) Dis3l2_C_term PF17877.1 CQR53203.1 - 0.038 14.3 0.1 0.094 13.0 0.0 1.7 2 0 0 2 2 2 0 DIS3-like exonuclease 2 C terminal Sigma70_r2 PF04542.14 CQR53205.1 - 2.8e-18 65.5 0.8 2.8e-18 65.5 0.8 1.6 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR53205.1 - 9.3e-09 34.8 0.3 1.8e-08 33.9 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR53205.1 - 8e-08 31.7 0.4 8e-08 31.7 0.4 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR53205.1 - 0.00086 19.2 0.3 0.0022 17.9 0.3 1.6 1 1 0 1 1 1 1 ECF sigma factor HTH_16 PF12645.7 CQR53205.1 - 0.024 14.7 0.3 0.091 12.8 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1825 PF08855.10 CQR53207.1 - 0.017 15.0 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) DNA_ligase_A_M PF01068.21 CQR53211.1 - 2.8e-32 112.0 0.0 3.9e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.15 CQR53211.1 - 1.3e-16 60.9 0.0 3.2e-16 59.7 0.0 1.6 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 CQR53211.1 - 1.8e-05 24.7 0.0 0.061 13.1 0.0 2.4 2 0 0 2 2 2 2 mRNA capping enzyme, catalytic domain RNA_ligase PF09414.10 CQR53211.1 - 0.00013 22.3 0.0 0.00019 21.8 0.0 1.3 1 0 0 1 1 1 1 RNA ligase Ku PF02735.16 CQR53214.1 - 1.7e-37 129.1 0.0 2.2e-37 128.7 0.0 1.1 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain SspH PF08141.12 CQR53218.1 - 1.9e-23 82.3 0.1 2.1e-23 82.2 0.1 1.0 1 0 0 1 1 1 1 Small acid-soluble spore protein H family TsaE PF02367.17 CQR53221.1 - 3.5e-35 120.7 0.0 4.1e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 CQR53221.1 - 0.035 13.3 0.0 0.035 13.3 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain CoaE PF01121.20 CQR53221.1 - 0.071 12.8 0.2 0.1 12.2 0.2 1.2 1 0 0 1 1 1 0 Dephospho-CoA kinase PRK PF00485.18 CQR53221.1 - 0.19 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Peptidase_M22 PF00814.25 CQR53223.1 - 7.5e-22 78.3 1.5 4.5e-21 75.8 1.5 1.9 1 1 0 1 1 1 1 Glycoprotease family Acetyltransf_1 PF00583.25 CQR53225.1 - 1.7e-15 57.3 0.1 2.2e-15 56.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR53225.1 - 2.4e-11 43.6 0.0 3.1e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53225.1 - 3.3e-10 40.2 0.1 4.9e-10 39.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR53225.1 - 6.9e-07 29.5 0.1 8.1e-07 29.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR53225.1 - 0.00027 21.6 0.2 0.00037 21.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR53225.1 - 0.00034 20.3 0.1 0.0036 17.0 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53225.1 - 0.0041 17.1 0.1 0.0072 16.3 0.1 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 CQR53225.1 - 0.037 14.2 0.1 0.05 13.8 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR53225.1 - 0.1 12.7 0.0 1.4 9.0 0.0 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M22 PF00814.25 CQR53227.1 - 3.2e-100 335.3 0.7 3.7e-100 335.1 0.7 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 CQR53227.1 - 0.0027 17.4 0.5 0.0062 16.2 0.2 1.7 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus HMGL-like PF00682.19 CQR53231.1 - 1.8e-87 293.2 1.9 3.5e-87 292.3 0.8 1.8 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 CQR53231.1 - 7.4e-25 87.4 3.2 1.1e-24 86.8 2.4 1.7 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain ABC_tran PF00005.27 CQR53234.1 - 3.1e-56 189.7 3.6 6.7e-29 101.1 0.0 3.5 4 0 0 4 4 4 2 ABC transporter ABC_tran_Xtn PF12848.7 CQR53234.1 - 1.4e-31 108.3 23.0 4.3e-27 94.0 8.9 3.4 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 CQR53234.1 - 1.4e-14 54.6 16.7 9.5e-05 22.3 0.1 4.9 3 2 1 5 5 5 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_CTD PF16326.5 CQR53234.1 - 4.4e-13 49.3 25.4 3.9e-12 46.3 7.1 4.1 3 1 1 4 4 4 2 ABC transporter C-terminal domain SMC_N PF02463.19 CQR53234.1 - 4.2e-12 46.0 0.0 0.0029 17.1 0.0 4.4 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR53234.1 - 8.7e-09 35.5 0.3 0.00047 20.1 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 CQR53234.1 - 1.7e-07 30.9 0.8 0.0031 17.2 0.0 3.0 2 1 1 3 3 3 2 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 CQR53234.1 - 4.6e-06 26.7 0.2 0.083 13.0 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_16 PF13191.6 CQR53234.1 - 5.3e-06 26.9 1.2 0.033 14.6 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain AAA_25 PF13481.6 CQR53234.1 - 0.00022 20.9 0.6 0.034 13.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR53234.1 - 0.00055 20.2 0.4 0.3 11.4 0.1 3.4 3 1 0 3 3 3 1 AAA domain NACHT PF05729.12 CQR53234.1 - 0.00074 19.5 0.8 0.77 9.7 0.1 2.5 2 0 0 2 2 2 2 NACHT domain AAA_23 PF13476.6 CQR53234.1 - 0.0011 19.5 28.4 0.0054 17.3 0.0 4.9 4 2 0 4 4 3 2 AAA domain Rad17 PF03215.15 CQR53234.1 - 0.0014 18.6 0.0 0.78 9.6 0.0 2.5 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_15 PF13175.6 CQR53234.1 - 0.002 17.9 10.5 0.081 12.6 0.0 3.9 5 0 0 5 5 4 2 AAA ATPase domain RNA_helicase PF00910.22 CQR53234.1 - 0.011 16.1 0.3 7.5 7.0 0.1 2.8 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 CQR53234.1 - 0.018 14.8 3.4 1.7 8.3 0.1 3.1 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 CQR53234.1 - 0.022 13.8 6.7 0.041 12.9 0.1 3.1 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 CQR53234.1 - 0.026 14.9 0.4 7.8 6.9 0.0 2.9 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 CQR53234.1 - 0.027 14.7 0.1 9.4 6.5 0.0 2.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 CQR53234.1 - 0.028 14.5 8.8 0.2 11.7 0.1 4.0 4 1 1 5 5 5 0 Dynamin family AAA_14 PF13173.6 CQR53234.1 - 0.037 14.1 0.0 6.9 6.7 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_18 PF13238.6 CQR53234.1 - 0.054 14.1 0.0 0.054 14.1 0.0 3.6 4 1 0 4 4 3 0 AAA domain AAA_33 PF13671.6 CQR53234.1 - 0.056 13.6 6.8 1.7 8.8 0.0 3.6 4 0 0 4 4 3 0 AAA domain TsaE PF02367.17 CQR53234.1 - 0.082 12.9 0.1 8.9 6.3 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 CQR53234.1 - 0.094 12.4 0.1 3.2 7.4 0.0 2.7 2 0 0 2 2 2 0 IstB-like ATP binding protein PduV-EutP PF10662.9 CQR53234.1 - 0.11 12.2 0.7 10 5.9 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 CQR53234.1 - 0.11 12.7 6.7 2.1 8.6 0.0 3.4 4 0 0 4 4 3 0 AAA domain DUF5082 PF16888.5 CQR53234.1 - 0.12 12.6 11.1 0.047 14.0 1.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) AAA_7 PF12775.7 CQR53234.1 - 0.12 11.8 0.1 13 5.2 0.1 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region FeoB_N PF02421.18 CQR53234.1 - 0.2 11.2 0.3 2.7 7.5 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_30 PF13604.6 CQR53234.1 - 0.68 9.6 3.6 16 5.2 0.0 2.7 3 0 0 3 3 2 0 AAA domain PCRF PF03462.18 CQR53234.1 - 4.7 7.0 0.0 4.7 7.0 0.0 3.9 3 1 1 4 4 3 0 PCRF domain 5-FTHF_cyc-lig PF01812.20 CQR53236.1 - 2.3e-38 131.9 0.0 2.7e-38 131.7 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MoaC PF01967.21 CQR53238.1 - 1.7e-56 190.1 1.4 1.9e-56 189.9 1.4 1.0 1 0 0 1 1 1 1 MoaC family RL11D PF11088.8 CQR53238.1 - 0.14 12.4 0.0 0.33 11.2 0.0 1.5 2 0 0 2 2 2 0 Glycoprotein encoding membrane proteins RL5A and RL6 MoCF_biosynth PF00994.24 CQR53240.1 - 4.9e-32 110.6 0.2 5.7e-32 110.4 0.2 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain MttA_Hcf106 PF02416.16 CQR53243.1 - 6.3e-16 57.4 0.2 8e-16 57.1 0.2 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family TatC PF00902.18 CQR53245.1 - 1.5e-51 175.2 26.5 1.8e-51 175.0 26.5 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Phage_holin_8 PF16931.5 CQR53245.1 - 3.4 7.6 7.5 0.85 9.6 0.2 2.7 3 0 0 3 3 3 0 Putative phage holin Cpn10 PF00166.21 CQR53247.1 - 1.5e-34 117.9 0.1 1.7e-34 117.8 0.1 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit eIF-1a PF01176.19 CQR53247.1 - 0.072 12.9 0.0 5.6 6.9 0.0 2.5 1 1 1 2 2 2 0 Translation initiation factor 1A / IF-1 Cpn60_TCP1 PF00118.24 CQR53249.1 - 5.8e-105 351.7 19.9 8.2e-105 351.2 19.9 1.2 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HalX PF08663.10 CQR53249.1 - 1.1 9.7 4.0 0.58 10.5 0.3 2.3 2 0 0 2 2 2 0 HalX domain Ammonium_transp PF00909.21 CQR53251.1 - 2.8e-114 381.9 36.9 3.2e-114 381.7 36.9 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family ACCA PF03255.14 CQR53253.1 - 0.017 15.0 1.2 0.023 14.5 1.2 1.3 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CdvA PF18822.1 CQR53253.1 - 0.018 14.8 3.0 0.2 11.5 2.2 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain BLOC1_2 PF10046.9 CQR53253.1 - 0.038 14.3 1.3 5.8 7.3 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mst1_SARAH PF11629.8 CQR53253.1 - 0.055 13.6 1.6 0.055 13.6 1.6 2.0 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 DUF4145 PF13643.6 CQR53253.1 - 0.057 13.6 0.4 0.088 12.9 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) Lant_dehydr_N PF04738.13 CQR53253.1 - 0.14 10.3 0.0 0.17 10.0 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus ABC_tran_CTD PF16326.5 CQR53255.1 - 0.0017 18.6 3.0 0.002 18.3 3.0 1.1 1 0 0 1 1 1 1 ABC transporter C-terminal domain DUF2730 PF10805.8 CQR53255.1 - 0.013 15.5 0.1 0.015 15.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) FlxA PF14282.6 CQR53255.1 - 0.027 14.4 2.0 0.044 13.8 2.0 1.4 1 1 0 1 1 1 0 FlxA-like protein LMP PF04778.12 CQR53255.1 - 0.037 13.9 0.1 0.037 13.9 0.1 1.1 1 0 0 1 1 1 0 LMP repeated region DivIC PF04977.15 CQR53255.1 - 0.34 10.7 4.3 2 8.2 4.3 1.9 1 1 0 1 1 1 0 Septum formation initiator M PF02370.16 CQR53255.1 - 1.7 9.5 7.9 0.68 10.7 0.7 2.8 1 1 1 2 2 2 0 M protein repeat HATPase_c_5 PF14501.6 CQR53257.1 - 9.3e-23 80.1 0.0 1.8e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain LytTR PF04397.15 CQR53259.1 - 1.8e-17 63.3 0.0 2.8e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 LytTr DNA-binding domain Response_reg PF00072.24 CQR53259.1 - 7.8e-11 42.1 0.0 1.2e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain ABC_tran PF00005.27 CQR53261.1 - 5.9e-29 101.3 0.0 9.7e-29 100.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR53261.1 - 9.4e-13 48.6 1.4 7e-07 29.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR53261.1 - 0.0082 16.7 0.3 0.014 16.0 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR53261.1 - 0.019 14.7 0.5 0.089 12.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 CQR53261.1 - 0.044 13.5 0.1 0.093 12.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR53261.1 - 0.07 12.8 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain SP_C-Propep PF08999.10 CQR53261.1 - 0.14 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide ABC2_membrane_3 PF12698.7 CQR53262.1 - 8.2e-07 28.5 26.9 8.2e-07 28.5 26.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR53262.1 - 0.00012 22.1 9.8 0.00012 22.1 9.8 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR53262.1 - 0.0011 18.3 24.8 0.0025 17.2 24.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein PMSR PF01625.21 CQR53264.1 - 5e-58 195.6 0.0 8e-58 195.0 0.0 1.3 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 CQR53264.1 - 2e-35 121.5 0.0 3.1e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 SelR domain TGase_elicitor PF16683.5 CQR53264.1 - 0.062 12.1 0.1 0.093 11.5 0.1 1.2 1 0 0 1 1 1 0 Transglutaminase elicitor WYL PF13280.6 CQR53267.1 - 1.6e-34 119.4 3.6 2.5e-34 118.8 3.6 1.2 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR53267.1 - 4.8e-12 45.6 0.0 8.7e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 CQR53267.1 - 0.00025 20.8 0.0 0.00077 19.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 CQR53267.1 - 0.00027 20.4 0.0 0.00055 19.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 CQR53267.1 - 0.00042 20.3 0.0 0.0011 18.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 CQR53267.1 - 0.0013 18.8 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_20 PF12840.7 CQR53267.1 - 0.0065 16.5 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_22 PF13309.6 CQR53267.1 - 0.01 15.9 0.1 0.019 15.0 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 CQR53267.1 - 0.011 16.0 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 CQR53267.1 - 0.016 15.6 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 CQR53267.1 - 0.057 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Tnp_4 PF13613.6 CQR53267.1 - 0.24 11.2 1.7 2.8 7.8 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix of DDE superfamily endonuclease DinB PF05163.12 CQR53268.1 - 1.1e-35 123.1 2.6 1.2e-35 122.9 2.6 1.0 1 0 0 1 1 1 1 DinB family DinB_2 PF12867.7 CQR53268.1 - 3.7e-14 53.3 0.3 4.5e-14 53.0 0.3 1.1 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR53268.1 - 1.1e-05 26.0 0.3 1.3e-05 25.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF664) DUF4953 PF16313.5 CQR53268.1 - 0.056 12.6 0.0 0.077 12.2 0.0 1.4 1 0 0 1 1 1 0 Met-zincin Acetyltransf_1 PF00583.25 CQR53270.1 - 9.1e-11 42.0 0.0 1.3e-10 41.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR53270.1 - 8.3e-10 39.0 0.0 1.4e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR53270.1 - 6.8e-08 32.5 0.0 1e-07 31.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53270.1 - 7.8e-07 29.0 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 CQR53270.1 - 2.5e-05 24.4 0.0 0.0011 19.1 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR53270.1 - 0.0023 17.6 0.0 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR53270.1 - 0.052 14.2 0.0 0.14 12.9 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 CQR53270.1 - 0.073 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_CG PF14542.6 CQR53270.1 - 0.1 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF2269 PF10027.9 CQR53272.1 - 0.006 16.6 0.5 0.006 16.6 0.5 2.9 2 1 0 2 2 2 1 Predicted integral membrane protein (DUF2269) Phage_holin_4_1 PF05105.12 CQR53272.1 - 1.1 9.4 7.9 0.2 11.8 4.4 1.6 2 0 0 2 2 2 0 Bacteriophage holin family DUF2070 PF09843.9 CQR53272.1 - 1.6 6.9 13.3 1.9 6.7 13.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TetR_N PF00440.23 CQR53274.1 - 6.6e-15 54.6 0.0 1.1e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_40 PF14493.6 CQR53274.1 - 0.017 15.5 0.0 0.042 14.3 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 CQR53274.1 - 0.026 14.6 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_11 PF08279.12 CQR53274.1 - 0.027 14.4 0.0 0.063 13.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain Terminase_5 PF06056.12 CQR53274.1 - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 CQR53274.1 - 0.074 13.1 0.1 0.19 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 CQR53274.1 - 0.085 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 CQR53274.1 - 0.087 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 CQR53274.1 - 0.11 12.7 1.3 0.53 10.4 0.4 2.4 2 1 1 3 3 3 0 Helix-turn-helix of insertion element transposase DUF2992 PF11208.8 CQR53276.1 - 4.6e-42 143.4 6.7 5.3e-42 143.2 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2992) REF PF05755.12 CQR53276.1 - 0.00075 19.4 0.6 0.00093 19.1 0.6 1.2 1 0 0 1 1 1 1 Rubber elongation factor protein (REF) DUF3618 PF12277.8 CQR53276.1 - 0.018 15.3 0.9 0.047 14.0 0.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) AAA_19 PF13245.6 CQR53278.1 - 3.4e-11 43.7 0.0 9.6e-10 39.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 CQR53278.1 - 1.2e-10 41.4 8.7 4.2e-06 26.5 0.2 2.9 3 1 0 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.6 CQR53278.1 - 6.1e-09 35.6 0.0 1.3e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 CQR53278.1 - 5.8e-08 32.5 0.0 0.00024 20.6 0.1 2.7 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain PhoH PF02562.16 CQR53278.1 - 4.2e-05 23.1 0.0 0.13 11.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein Zeta_toxin PF06414.12 CQR53278.1 - 0.0012 18.1 0.0 0.0055 16.0 0.0 2.1 1 1 0 1 1 1 1 Zeta toxin Viral_helicase1 PF01443.18 CQR53278.1 - 0.0024 17.6 0.0 2.8 7.6 0.0 2.8 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase DEAD PF00270.29 CQR53278.1 - 0.003 17.3 0.9 0.01 15.6 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF2075 PF09848.9 CQR53278.1 - 0.0056 16.0 0.0 0.019 14.2 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 CQR53278.1 - 0.0067 16.7 0.0 2.1 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 CQR53278.1 - 0.013 15.3 0.0 0.12 12.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 CQR53278.1 - 0.016 15.2 0.0 0.065 13.2 0.0 2.0 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.12 CQR53278.1 - 0.023 14.6 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 CQR53278.1 - 0.028 14.4 0.0 11 6.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 CQR53278.1 - 0.096 11.7 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Cass2 PF14526.6 CQR53281.1 - 6.2e-18 65.4 0.2 7.3e-18 65.1 0.2 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein GyrI-like PF06445.15 CQR53281.1 - 1.7e-14 54.4 0.3 1.9e-14 54.2 0.3 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain OrfB_IS605 PF01385.19 CQR53283.1 - 1.2e-29 102.9 2.1 3.3e-29 101.6 2.1 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR53283.1 - 1.4e-23 82.5 0.7 3.1e-23 81.5 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR53283.1 - 6.1e-23 80.1 1.8 1.6e-22 78.8 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L32e PF01655.18 CQR53283.1 - 0.011 16.1 4.9 0.029 14.8 4.9 1.7 1 0 0 1 1 1 0 Ribosomal protein L32 zf-RanBP PF00641.18 CQR53283.1 - 2.3 7.6 7.4 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others LysR_substrate PF03466.20 CQR53288.1 - 1.1e-45 155.6 0.4 1.4e-45 155.2 0.4 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR53288.1 - 2.8e-21 75.2 0.4 3e-20 71.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR53288.1 - 0.0046 16.7 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 CQR53288.1 - 0.038 14.1 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF596 PF04591.12 CQR53288.1 - 0.056 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF596 HTH_20 PF12840.7 CQR53288.1 - 0.076 13.1 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain SBP_bac_11 PF13531.6 CQR53288.1 - 0.086 12.6 0.0 3.2 7.4 0.0 2.7 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein MarR PF01047.22 CQR53288.1 - 0.13 12.2 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 MarR family Chorismate_synt PF01264.21 CQR53290.1 - 6.5e-140 465.5 1.5 7.9e-140 465.2 1.5 1.0 1 0 0 1 1 1 1 Chorismate synthase DUF1304 PF06993.12 CQR53292.1 - 4.8e-45 152.1 7.3 5.8e-45 151.8 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1304) Deltameth_res PF16020.5 CQR53292.1 - 0.43 10.5 1.9 4.6 7.2 0.1 2.7 2 1 0 2 2 2 0 Deltamethrin resistance Acetyltransf_1 PF00583.25 CQR53295.1 - 2.1e-16 60.2 0.0 2.6e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR53295.1 - 4.5e-15 55.7 0.0 5.8e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53295.1 - 4.9e-10 39.7 0.0 7.2e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR53295.1 - 9.9e-10 38.8 0.0 1.2e-09 38.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53295.1 - 4.6e-06 26.5 0.0 7.6e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 CQR53295.1 - 0.00076 20.2 0.0 0.00094 19.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR53295.1 - 0.003 17.7 0.0 0.0052 16.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 CQR53295.1 - 0.0036 17.4 0.0 0.0043 17.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR53295.1 - 0.015 15.4 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Zip PF02535.22 CQR53296.1 - 8.9e-25 87.6 21.2 1e-21 77.5 6.5 2.0 2 0 0 2 2 2 2 ZIP Zinc transporter Mntp PF02659.15 CQR53296.1 - 0.001 18.9 0.9 0.001 18.9 0.9 2.5 2 1 0 2 2 2 1 Putative manganese efflux pump DUF2070 PF09843.9 CQR53296.1 - 0.025 12.9 6.8 0.035 12.4 6.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1689 PF07954.11 CQR53296.1 - 0.24 11.8 0.8 0.51 10.7 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1689) CPP1-like PF11833.8 CQR53296.1 - 1.3 8.7 7.0 3.9 7.1 0.1 2.6 2 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like FtsX PF02687.21 CQR53296.1 - 9.9 6.7 14.0 4.5e+02 1.4 0.9 3.7 1 1 1 2 2 2 0 FtsX-like permease family Aldo_ket_red PF00248.21 CQR53298.1 - 6.5e-61 206.1 0.0 7.6e-61 205.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Aldo_ket_red PF00248.21 CQR53300.1 - 2.2e-66 224.0 0.0 2.5e-66 223.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AraC_binding PF02311.19 CQR53301.1 - 1.5e-23 83.2 0.1 2.3e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_18 PF12833.7 CQR53301.1 - 7.9e-19 67.7 0.0 1.2e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR53301.1 - 2.1e-16 59.6 0.0 5e-08 32.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR53301.1 - 0.00065 19.4 0.3 0.0012 18.5 0.3 1.5 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 CQR53301.1 - 0.0024 17.6 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 AraC-binding-like domain AraC_N PF06719.13 CQR53301.1 - 0.068 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus Lantibiotic_a PF14867.6 CQR53301.1 - 0.39 10.5 1.3 0.92 9.3 1.3 1.6 1 0 0 1 1 1 0 Lantibiotic alpha 2Fe-2S_thioredx PF01257.19 CQR53302.1 - 4.8e-09 36.2 0.4 5.4e-09 36.1 0.4 1.1 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.12 CQR53302.1 - 2.1e-05 24.5 0.5 8.3e-05 22.5 0.4 1.8 1 1 0 1 1 1 1 Sucrase/ferredoxin-like DUF1636 PF07845.11 CQR53302.1 - 0.025 15.0 0.1 0.043 14.2 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1636) DUF2382 PF09557.10 CQR53304.1 - 1.3e-30 105.9 30.5 1.7e-30 105.5 27.8 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2382) YflT PF11181.8 CQR53304.1 - 1e-13 51.6 3.1 5.8e-13 49.2 0.1 3.3 3 1 0 3 3 3 1 Heat induced stress protein YflT DUF1269 PF06897.12 CQR53304.1 - 0.0027 18.0 11.7 0.014 15.7 9.7 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1269) DUF3341 PF11821.8 CQR53304.1 - 0.015 14.9 0.0 0.52 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) HEPN PF05168.14 CQR53306.1 - 0.0004 20.5 1.1 0.00071 19.7 1.1 1.4 1 1 0 1 1 1 1 HEPN domain HTH_3 PF01381.22 CQR53308.1 - 2.4e-14 53.1 0.1 3.8e-14 52.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR53308.1 - 2.5e-09 37.3 0.0 3.4e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR53308.1 - 7.9e-09 35.4 0.4 1.2e-08 34.8 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR53308.1 - 0.0072 16.2 0.3 0.023 14.6 0.0 1.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR53308.1 - 0.022 15.2 0.0 0.03 14.8 0.0 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 CQR53308.1 - 0.068 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain eIF-5_eIF-2B PF01873.17 CQR53308.1 - 0.091 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Mrr_cat PF04471.12 CQR53310.1 - 1.3e-22 80.0 0.1 2.2e-22 79.2 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 CQR53310.1 - 2.2e-12 47.0 0.0 3.5e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease zf-C4_Topoisom PF01396.19 CQR53310.1 - 1e-10 41.2 0.7 2e-10 40.3 0.7 1.5 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_recom PF13408.6 CQR53310.1 - 0.016 15.7 1.9 0.016 15.7 1.9 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF2034 PF10356.9 CQR53310.1 - 0.58 9.6 2.9 0.69 9.3 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2034) APH PF01636.23 CQR53312.1 - 2e-19 70.5 1.5 2.6e-19 70.1 1.5 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF1679 PF07914.11 CQR53312.1 - 1.8e-05 23.8 0.0 2.6e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Fructosamin_kin PF03881.14 CQR53312.1 - 0.0013 18.0 0.0 0.016 14.4 0.0 2.3 1 1 0 1 1 1 1 Fructosamine kinase EcKinase PF02958.20 CQR53312.1 - 0.0069 15.7 0.0 0.009 15.4 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.20 CQR53312.1 - 0.022 14.4 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Choline/ethanolamine kinase DEP PF00610.21 CQR53312.1 - 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) WYL PF13280.6 CQR53313.1 - 1.4e-29 103.4 0.0 1.8e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR53313.1 - 6.8e-11 41.9 0.0 1.5e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR53313.1 - 4.3e-05 23.2 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PuR_N PF09182.10 CQR53313.1 - 0.0018 18.2 0.0 0.0048 16.8 0.0 1.8 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal Rrf2 PF02082.20 CQR53313.1 - 0.065 13.6 0.1 0.23 11.8 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator 3-dmu-9_3-mt PF06983.13 CQR53314.1 - 1.4e-07 32.1 0.0 3e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.25 CQR53314.1 - 0.00089 19.5 0.0 0.0028 17.8 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CooT PF10133.9 CQR53314.1 - 0.057 13.7 0.7 0.14 12.4 0.1 1.8 1 1 1 2 2 2 0 CO dehydrogenase accessory protein CooT OmdA PF13376.6 CQR53315.1 - 6.6e-12 45.3 1.1 2.7e-11 43.3 0.2 2.3 2 0 0 2 2 2 1 Bacteriocin-protection, YdeI or OmpD-Associated HA PF03457.14 CQR53315.1 - 0.061 13.7 2.4 0.088 13.2 0.5 2.2 2 1 0 2 2 2 0 Helicase associated domain RXLR PF16810.5 CQR53315.1 - 0.069 13.6 0.6 0.11 12.9 0.6 1.4 1 0 0 1 1 1 0 RXLR phytopathogen effector protein, Avirulence activity Sigma70_r2 PF04542.14 CQR53316.1 - 4.6e-06 26.3 0.0 9.7e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR53316.1 - 3.8e-05 23.3 0.0 7.7e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR53316.1 - 5.4e-05 22.6 0.0 9.3e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR53316.1 - 0.0027 17.6 0.0 0.0049 16.8 0.0 1.4 2 0 0 2 2 2 1 ECF sigma factor FeoC PF09012.10 CQR53316.1 - 0.068 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF5051 PF16473.5 CQR53317.1 - 0.029 14.4 0.0 0.12 12.4 0.0 1.9 1 1 1 2 2 2 0 3' exoribonuclease, RNase T-like DUF4441 PF14536.6 CQR53317.1 - 0.081 13.1 1.6 0.19 11.9 0.5 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4441) Acetyltransf_1 PF00583.25 CQR53318.1 - 3.7e-07 30.4 0.0 0.00011 22.4 0.0 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR53318.1 - 0.0019 18.6 0.0 0.014 15.8 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR53318.1 - 0.027 14.5 0.0 3.6 7.7 0.0 2.7 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53318.1 - 0.082 12.9 0.0 0.51 10.3 0.0 2.2 1 1 0 1 1 1 0 FR47-like protein Acetyltransf_6 PF13480.7 CQR53318.1 - 0.1 12.7 0.0 0.43 10.7 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FBPase_glpX PF03320.13 CQR53319.1 - 1.3e-133 444.6 1.6 1.5e-133 444.5 1.6 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Kinase-PPPase PF03618.14 CQR53320.1 - 2.4e-91 306.0 0.0 2.8e-91 305.8 0.0 1.0 1 0 0 1 1 1 1 Kinase/pyrophosphorylase UxuA PF03786.13 CQR53320.1 - 0.0048 15.8 0.1 0.0071 15.2 0.1 1.3 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) YqeY PF09424.10 CQR53320.1 - 0.053 13.6 0.2 0.094 12.8 0.2 1.3 1 0 0 1 1 1 0 Yqey-like protein CBS PF00571.28 CQR53321.1 - 2.1e-14 53.7 5.5 5.8e-08 33.1 0.5 2.7 3 0 0 3 3 3 2 CBS domain HTH_11 PF08279.12 CQR53321.1 - 3.8e-11 42.7 0.2 1.3e-10 41.0 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 CQR53321.1 - 3e-07 30.1 0.1 5.7e-07 29.2 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 CQR53321.1 - 3.9e-06 26.6 0.1 7.7e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.15 CQR53321.1 - 3.8e-05 23.3 0.0 7.2e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_24 PF13412.6 CQR53321.1 - 0.0001 21.8 0.1 0.00017 21.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 CQR53321.1 - 0.00018 20.9 0.1 0.00034 20.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 CQR53321.1 - 0.00038 20.3 0.4 0.00069 19.5 0.0 1.7 2 0 0 2 2 1 1 MarR family MarR_2 PF12802.7 CQR53321.1 - 0.00051 19.9 0.1 0.0017 18.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.11 CQR53321.1 - 0.00099 19.1 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 CQR53321.1 - 0.0068 16.2 0.0 0.016 15.0 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 CQR53321.1 - 0.0085 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 CQR53321.1 - 0.021 14.7 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 CQR53321.1 - 0.024 14.4 0.1 0.043 13.6 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GerE PF00196.19 CQR53321.1 - 0.037 13.6 0.0 0.092 12.3 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.19 CQR53321.1 - 0.039 14.2 0.0 0.071 13.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Dimerisation2 PF16864.5 CQR53321.1 - 0.054 13.5 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain HTH_9 PF08221.11 CQR53321.1 - 0.064 13.4 1.3 0.095 12.8 0.1 1.9 3 0 0 3 3 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Penicillinase_R PF03965.16 CQR53321.1 - 0.068 13.5 0.1 0.17 12.2 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor Dimerisation PF08100.11 CQR53321.1 - 0.068 13.2 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Dimerisation domain HTH_36 PF13730.6 CQR53321.1 - 0.069 13.1 0.1 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 CQR53321.1 - 0.088 12.8 0.2 0.3 11.1 0.1 2.0 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus LexA_DNA_bind PF01726.16 CQR53321.1 - 0.17 11.6 0.3 0.53 10.1 0.3 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.12 CQR53321.1 - 0.22 11.4 0.5 1.8 8.4 0.1 2.4 2 1 0 2 2 1 0 HTH DNA binding domain CbiG_N PF11760.8 CQR53322.1 - 0.93 9.5 4.2 1.6 8.7 0.2 2.1 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal EamA PF00892.20 CQR53323.1 - 2.8e-33 115.0 40.3 1.9e-17 63.7 14.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family Aminotran_1_2 PF00155.21 CQR53324.1 - 1.8e-27 96.5 0.0 3e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 CQR53324.1 - 6e-13 48.2 0.0 2.6e-12 46.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 CQR53324.1 - 6.5e-06 25.2 0.0 8.3e-05 21.5 0.0 2.0 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase HTH_11 PF08279.12 CQR53324.1 - 0.054 13.4 0.0 0.22 11.5 0.0 2.0 1 0 0 1 1 1 0 HTH domain Aminotran_5 PF00266.19 CQR53324.1 - 0.062 12.2 0.0 0.089 11.7 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-V HTH_41 PF14502.6 CQR53324.1 - 0.18 11.5 0.0 0.39 10.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Alk_phosphatase PF00245.20 CQR53325.1 - 6.9e-86 288.8 10.2 1.1e-78 265.0 7.3 2.1 1 1 1 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.18 CQR53325.1 - 2.3e-08 33.7 1.1 2.4e-07 30.4 1.1 2.2 1 1 0 1 1 1 1 Metalloenzyme superfamily DUF1729 PF08354.10 CQR53325.1 - 0.038 12.9 0.6 0.073 12.0 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1729) Ribosomal_L9_C PF03948.14 CQR53325.1 - 0.14 12.7 1.2 0.6 10.6 0.3 2.3 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain FMN_bind PF04205.14 CQR53326.1 - 0.62 10.7 8.2 1.6 9.4 8.2 1.8 1 1 0 1 1 1 0 FMN-binding domain Gate PF07670.14 CQR53327.1 - 1.2e-22 80.3 10.2 9.5e-17 61.3 3.1 3.0 4 0 0 4 4 4 2 Nucleoside recognition FeoB_C PF07664.12 CQR53327.1 - 2.3e-13 49.6 0.7 2.3e-13 49.6 0.7 2.8 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus DUF3007 PF11460.8 CQR53327.1 - 2.2 8.6 6.6 14 6.1 0.6 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) FeoB_N PF02421.18 CQR53328.1 - 2.1e-55 186.6 0.0 2.6e-55 186.2 0.0 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1 PF01926.23 CQR53328.1 - 4.1e-17 62.3 0.0 6.2e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 CQR53328.1 - 1.2e-11 45.0 0.0 2.4e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 CQR53328.1 - 0.00046 19.7 0.0 0.00065 19.2 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 CQR53328.1 - 0.00052 20.1 0.1 0.81 9.7 0.0 2.8 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 CQR53328.1 - 0.00067 19.6 0.1 0.48 10.3 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 CQR53328.1 - 0.0012 18.4 0.1 0.11 12.0 0.1 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 CQR53328.1 - 0.039 14.5 0.0 0.055 14.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter FeoA PF04023.14 CQR53329.1 - 3.5e-17 62.4 0.1 4.3e-17 62.1 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Asparaginase PF00710.20 CQR53330.1 - 5.1e-48 163.1 0.3 8e-48 162.5 0.3 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 CQR53330.1 - 7.1e-18 64.9 0.1 2e-17 63.5 0.1 1.8 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Peripla_BP_4 PF13407.6 CQR53330.1 - 0.0044 16.6 2.9 0.063 12.8 0.2 2.5 2 1 0 2 2 2 2 Periplasmic binding protein domain AHSA1 PF08327.11 CQR53331.1 - 1.7e-09 38.0 0.0 1.9e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein OrfB_IS605 PF01385.19 CQR53332.1 - 1.4e-29 102.8 2.1 3.3e-29 101.6 2.1 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR53332.1 - 2.7e-23 81.7 0.5 5.7e-23 80.6 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR53332.1 - 3.1e-23 81.0 1.8 7.9e-23 79.7 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L32e PF01655.18 CQR53332.1 - 0.011 16.1 4.9 0.029 14.8 4.9 1.7 1 0 0 1 1 1 0 Ribosomal protein L32 zf-RanBP PF00641.18 CQR53332.1 - 9.1 5.7 8.7 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others WYL PF13280.6 CQR53333.1 - 7.6e-26 91.2 0.0 9.9e-26 90.8 0.0 1.1 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR53333.1 - 4.1e-12 45.8 0.0 1.1e-11 44.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR53333.1 - 0.002 17.6 0.0 0.0043 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 CQR53333.1 - 0.0025 18.1 0.0 0.0051 17.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 CQR53333.1 - 0.017 15.1 0.1 0.13 12.3 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn helix HTH_28 PF13518.6 CQR53333.1 - 0.026 14.7 0.1 0.065 13.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 CQR53333.1 - 0.089 12.9 0.7 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 HTH domain FAM198 PF15051.6 CQR53333.1 - 0.19 10.6 0.0 0.28 10.0 0.0 1.1 1 0 0 1 1 1 0 FAM198 protein FtsX PF02687.21 CQR53334.1 - 9.3e-09 35.6 7.9 9.3e-09 35.6 7.9 5.6 3 3 3 6 6 6 1 FtsX-like permease family YrhC PF14143.6 CQR53334.1 - 1.2 9.2 8.4 1.1 9.4 3.8 3.3 2 0 0 2 2 2 0 YrhC-like protein ABC_tran PF00005.27 CQR53335.1 - 3.3e-32 111.9 0.0 4.3e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 CQR53335.1 - 0.00036 21.0 0.0 0.00055 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 CQR53335.1 - 0.0004 20.3 1.3 0.33 10.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53335.1 - 0.001 18.6 0.2 0.94 8.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR53335.1 - 0.0012 18.5 0.1 0.0023 17.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR53335.1 - 0.0019 18.1 0.1 0.0039 17.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase ATP-synt_ab PF00006.25 CQR53335.1 - 0.0026 17.4 0.0 0.0033 17.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 CQR53335.1 - 0.0095 15.5 0.0 0.93 9.0 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR53335.1 - 0.0097 16.2 0.4 0.027 14.7 0.4 1.9 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 CQR53335.1 - 0.014 14.5 0.3 0.027 13.5 0.2 1.6 1 1 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.6 CQR53335.1 - 0.021 15.3 0.6 0.043 14.3 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR53335.1 - 0.028 14.1 0.0 0.074 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 CQR53335.1 - 0.03 13.9 0.1 0.056 13.0 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 CQR53335.1 - 0.046 12.9 0.0 0.093 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 CQR53335.1 - 0.057 13.2 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 CQR53335.1 - 0.059 13.3 0.5 1.5 8.7 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA PF00004.29 CQR53335.1 - 0.073 13.5 0.5 0.81 10.1 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 CQR53335.1 - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 CQR53335.1 - 0.13 11.9 0.1 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR53335.1 - 0.23 12.0 1.1 0.48 11.0 1.1 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR53335.1 - 0.24 11.5 0.8 0.62 10.2 0.1 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase Spore_permease PF03845.13 CQR53336.1 - 1.7e-53 181.5 19.7 2.2e-53 181.2 19.7 1.0 1 0 0 1 1 1 1 Spore germination protein DUF2568 PF10823.8 CQR53336.1 - 0.073 13.4 0.6 0.073 13.4 0.6 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2568) DUF4131 PF13567.6 CQR53337.1 - 0.26 10.9 2.0 0.26 10.9 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Spore_GerAC PF05504.11 CQR53338.1 - 2.1e-30 106.1 0.3 3.3e-30 105.5 0.3 1.3 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal DUF499 PF04465.12 CQR53338.1 - 0.014 13.1 0.6 0.02 12.7 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF499) Spore_permease PF03845.13 CQR53339.1 - 1e-40 139.5 29.7 1.4e-40 139.1 29.0 1.5 2 0 0 2 2 2 1 Spore germination protein GerA PF03323.13 CQR53340.1 - 1.8e-187 623.5 1.5 2e-187 623.3 1.5 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein HATPase_c PF02518.26 CQR53341.1 - 1.6e-18 67.2 0.8 6.6e-18 65.2 0.1 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR53341.1 - 0.00013 21.9 2.8 0.00041 20.3 0.2 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 CQR53341.1 - 0.0023 17.9 0.0 0.0048 16.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR53341.1 - 0.0028 17.5 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trans_reg_C PF00486.28 CQR53342.1 - 3.7e-24 84.6 0.6 7e-24 83.7 0.6 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR53342.1 - 2.6e-21 75.9 0.0 5.9e-21 74.7 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain NAGPA PF09992.9 CQR53343.1 - 7.3e-33 114.2 1.7 1.7e-32 113.0 0.2 2.0 2 1 0 2 2 2 1 Phosphodiester glycosidase Cu_amine_oxidN1 PF07833.11 CQR53343.1 - 1.2e-13 51.3 0.0 3e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain His_Phos_1 PF00300.22 CQR53344.1 - 1.8e-50 171.4 0.1 2e-50 171.2 0.1 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Y2_Tnp PF04986.13 CQR53346.1 - 8.7e-37 126.9 1.7 8.7e-37 126.9 1.7 2.1 2 0 0 2 2 2 1 Putative transposase Zn_Tnp_IS91 PF14319.6 CQR53346.1 - 5.6e-29 100.0 7.4 9.4e-29 99.3 3.7 2.5 2 0 0 2 2 2 1 Transposase zinc-binding domain MobA_MobL PF03389.15 CQR53346.1 - 0.017 14.9 0.2 0.046 13.5 0.2 1.7 1 1 0 1 1 1 0 MobA/MobL family DUF5638 PF18688.1 CQR53346.1 - 0.053 13.8 0.4 0.12 12.7 0.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5638) WW PF00397.26 CQR53346.1 - 3.4 7.8 7.9 0.13 12.3 0.7 2.4 3 0 0 3 3 3 0 WW domain DNA_ligase_ZBD PF03119.16 CQR53347.1 - 0.0047 16.9 0.2 0.0047 16.9 0.2 1.8 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 CQR53347.1 - 0.0066 15.9 2.1 1.6 8.3 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-RRN7 PF11781.8 CQR53347.1 - 0.01 15.5 2.1 0.62 9.8 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RNA_POL_M_15KD PF02150.16 CQR53347.1 - 0.091 12.7 4.5 8.8 6.3 0.1 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 CQR53347.1 - 0.11 12.3 1.6 3 7.6 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 CQR53347.1 - 0.13 12.2 0.7 9.1 6.3 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 CQR53347.1 - 0.16 12.1 3.6 2.8 8.1 3.6 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 CQR53347.1 - 0.19 11.6 1.9 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf_C2H2_ZHX PF18387.1 CQR53347.1 - 3 7.6 6.6 8.1 6.2 0.5 2.7 2 1 1 3 3 3 0 Zinc-fingers and homeoboxes C2H2 finger domain GGDEF PF00990.21 CQR53348.1 - 7.3e-38 129.8 0.2 1e-37 129.4 0.2 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain COX1 PF00115.20 CQR53348.1 - 0.012 14.5 0.5 0.018 13.9 0.5 1.1 1 0 0 1 1 1 0 Cytochrome C and Quinol oxidase polypeptide I Guanylate_cyc PF00211.20 CQR53348.1 - 0.034 13.8 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Adenylate and Guanylate cyclase catalytic domain GGDEF_2 PF17853.1 CQR53348.1 - 0.076 13.3 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 GGDEF-like domain MFS_1 PF07690.16 CQR53349.1 - 1.8e-44 152.1 44.7 5.3e-29 101.3 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR53349.1 - 5e-21 74.8 29.9 2.2e-13 49.5 9.8 2.3 2 0 0 2 2 2 2 MFS/sugar transport protein PUCC PF03209.15 CQR53349.1 - 1.1e-06 28.0 20.6 4.7e-05 22.6 20.6 2.8 1 1 0 1 1 1 1 PUCC protein MFS_1_like PF12832.7 CQR53349.1 - 0.00031 19.7 5.1 0.00031 19.7 5.1 2.9 1 1 2 3 3 3 3 MFS_1 like family Folate_carrier PF01770.18 CQR53349.1 - 0.012 14.4 1.4 0.025 13.3 1.4 1.6 1 0 0 1 1 1 0 Reduced folate carrier GDPD PF03009.17 CQR53350.1 - 1.2e-49 169.4 0.0 1.7e-49 168.9 0.0 1.2 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 CQR53350.1 - 1.3e-08 35.0 0.1 9.8e-08 32.2 0.2 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family Lipoprotein_9 PF03180.14 CQR53351.1 - 2e-50 171.1 0.6 2.4e-50 170.9 0.6 1.0 1 0 0 1 1 1 1 NLPA lipoprotein Phosphonate-bd PF12974.7 CQR53351.1 - 0.0084 15.7 0.1 0.85 9.2 0.0 2.1 2 0 0 2 2 2 2 ABC transporter, phosphonate, periplasmic substrate-binding protein Arg_repressor PF01316.21 CQR53351.1 - 0.092 12.5 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain P5CR_dimer PF14748.6 CQR53352.1 - 3.4e-25 88.3 0.0 8.4e-25 87.0 0.0 1.7 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 CQR53352.1 - 4.8e-13 49.5 2.8 8.4e-13 48.7 2.8 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 CQR53352.1 - 0.014 15.5 0.5 0.022 14.8 0.5 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 CQR53352.1 - 0.06 14.2 0.4 0.12 13.3 0.4 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DDT PF02791.17 CQR53352.1 - 0.12 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 DDT domain Glyoxalase_3 PF13468.6 CQR53354.1 - 4e-40 137.8 1.0 5.3e-40 137.4 1.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 CQR53354.1 - 5.3e-08 33.1 0.0 5e-05 23.5 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alpha-amylase PF00128.24 CQR53358.1 - 4.6e-128 427.5 1.2 6.7e-128 427.0 1.2 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 CQR53358.1 - 2.5e-10 40.3 0.0 5.2e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 CQR53358.1 - 0.0043 16.2 0.0 0.0069 15.5 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain BPD_transp_1 PF00528.22 CQR53359.1 - 1.6e-27 96.5 14.8 1.6e-27 96.5 14.8 2.6 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component YqhR PF11085.8 CQR53359.1 - 0.00032 20.7 5.9 0.00032 20.7 5.9 2.4 3 0 0 3 3 3 1 Conserved membrane protein YqhR BPD_transp_1 PF00528.22 CQR53360.1 - 5.1e-19 68.7 16.5 5.1e-19 68.7 16.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF996 PF06195.13 CQR53360.1 - 4.9 7.5 19.9 0.17 12.2 9.3 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF996) SBP_bac_8 PF13416.6 CQR53362.1 - 3.1e-41 142.0 8.4 4.3e-41 141.6 8.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR53362.1 - 4.8e-35 122.0 10.4 7.1e-35 121.5 10.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR53362.1 - 1.1e-08 34.9 0.1 0.00079 18.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR53362.1 - 0.00014 21.7 0.3 0.0019 18.0 0.3 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Peripla_BP_6 PF13458.6 CQR53362.1 - 0.015 15.0 0.4 0.032 13.9 0.2 1.5 1 1 0 1 1 1 0 Periplasmic binding protein Peripla_BP_1 PF00532.21 CQR53364.1 - 3.6e-39 134.9 0.1 6.4e-39 134.0 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR53364.1 - 2.3e-37 128.9 0.0 3.9e-35 121.6 0.0 2.7 2 1 1 3 3 3 1 Periplasmic binding protein-like domain Peripla_BP_4 PF13407.6 CQR53364.1 - 3.6e-20 72.6 0.0 7e-20 71.7 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein domain LacI PF00356.21 CQR53364.1 - 3.8e-20 71.4 0.4 7.9e-20 70.4 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 CQR53364.1 - 8.8e-05 22.6 0.2 0.00016 21.7 0.2 1.5 1 0 0 1 1 1 1 Trp repressor protein TrmB PF01978.19 CQR53364.1 - 0.0047 16.8 2.4 0.25 11.3 0.0 3.9 4 0 0 4 4 4 1 Sugar-specific transcriptional regulator TrmB TnsD PF15978.5 CQR53364.1 - 0.013 14.5 0.1 0.022 13.8 0.1 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_24 PF13412.6 CQR53364.1 - 0.02 14.4 0.0 0.14 11.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 CQR53364.1 - 0.036 14.1 0.0 0.1 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 CQR53364.1 - 0.046 13.1 0.0 0.086 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PucR PF07905.11 CQR53364.1 - 0.057 13.7 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family GntR PF00392.21 CQR53364.1 - 0.073 12.7 0.3 3.5 7.3 0.0 3.2 3 1 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 CQR53364.1 - 0.087 12.8 0.1 0.26 11.3 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain, rpiR family She9_MDM33 PF05546.11 CQR53364.1 - 0.11 12.2 0.1 0.17 11.7 0.1 1.2 1 0 0 1 1 1 0 She9 / Mdm33 family HTH_11 PF08279.12 CQR53364.1 - 0.63 10.0 4.8 8.2 6.5 0.0 3.5 4 0 0 4 4 4 0 HTH domain HTH_18 PF12833.7 CQR53366.1 - 1.4e-21 76.5 0.1 6.5e-21 74.4 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR53366.1 - 1.4e-16 60.1 0.2 3.6e-09 36.5 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR53366.1 - 1.3e-08 34.8 0.1 4.5e-08 33.1 0.1 2.0 1 1 1 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR53366.1 - 1.4e-08 34.3 0.0 2.7e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 CQR53366.1 - 3.4e-05 23.5 0.0 7.3e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 CQR53366.1 - 0.0016 18.2 0.0 0.011 15.5 0.0 2.0 1 1 0 1 1 1 1 Cupin UPF0175 PF03683.13 CQR53366.1 - 0.0059 16.3 0.0 0.22 11.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) DNA_methylase PF00145.17 CQR53366.1 - 0.11 11.8 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase GFO_IDH_MocA PF01408.22 CQR53368.1 - 4.1e-29 101.9 0.8 6.5e-29 101.2 0.8 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR53368.1 - 1.6e-06 28.1 0.0 4.1e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR53368.1 - 0.0018 18.9 0.2 0.003 18.2 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 CQR53368.1 - 0.0025 18.1 0.3 0.0069 16.6 0.3 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Corona_NS2A PF05213.12 CQR53368.1 - 0.092 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NS2A protein Glyco_trans_4_2 PF13477.6 CQR53368.1 - 0.15 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like ThuA PF06283.11 CQR53371.1 - 2.6e-35 122.5 0.6 3.1e-35 122.3 0.6 1.0 1 0 0 1 1 1 1 Trehalose utilisation AP_endonuc_2 PF01261.24 CQR53373.1 - 1.3e-30 106.4 0.0 1.7e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 CQR53373.1 - 2.1e-21 75.4 0.1 3.5e-21 74.7 0.1 1.4 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus Corona_NS4 PF03905.13 CQR53375.1 - 0.17 11.9 0.0 30 4.7 0.0 2.7 2 1 1 3 3 3 0 Coronavirus non-structural protein NS4 Acetyltransf_1 PF00583.25 CQR53377.1 - 2.4e-16 60.0 0.0 3.2e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR53377.1 - 9.1e-14 51.6 0.0 1.5e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR53377.1 - 1.1e-13 51.2 0.0 1.5e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR53377.1 - 1e-07 32.1 0.0 3e-07 30.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53377.1 - 2.5e-06 27.4 0.0 3.3e-05 23.8 0.0 2.4 2 1 1 3 3 3 1 FR47-like protein Acetyltransf_13 PF13880.6 CQR53377.1 - 0.00017 21.5 0.0 0.0003 20.7 0.0 1.3 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase PanZ PF12568.8 CQR53377.1 - 0.0019 18.0 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 CQR53377.1 - 0.002 18.2 0.0 0.0034 17.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 CQR53377.1 - 0.0022 18.7 0.0 0.0026 18.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 CQR53377.1 - 0.06 12.8 0.0 0.098 12.1 0.0 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_5 PF13444.6 CQR53377.1 - 0.14 12.9 0.1 1.1 10.0 0.1 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain His_kinase PF06580.13 CQR53379.1 - 9.7e-20 70.7 2.3 2.2e-19 69.6 2.3 1.6 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR53379.1 - 1e-17 64.8 0.2 1.7e-17 64.0 0.2 1.4 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR53379.1 - 1.5e-06 28.7 0.0 2.8e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR53379.1 - 0.0053 17.1 0.1 0.015 15.6 0.0 1.9 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 CQR53379.1 - 0.035 13.9 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR53381.1 - 1.2e-25 89.9 0.1 2.5e-25 88.8 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR53381.1 - 3.1e-20 72.2 1.6 5.2e-20 71.5 0.1 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR53381.1 - 1e-15 57.3 0.0 2.8e-08 33.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR53381.1 - 0.0016 18.7 1.1 0.0047 17.2 0.1 2.3 2 1 0 2 2 2 1 GGDEF-like domain Dimerisation2 PF16864.5 CQR53381.1 - 0.027 14.4 0.2 0.19 11.7 0.0 2.5 3 0 0 3 3 3 0 Dimerisation domain BSD PF03909.17 CQR53381.1 - 0.085 12.9 0.0 0.34 11.0 0.0 2.1 1 0 0 1 1 1 0 BSD domain 3-alpha PF03475.14 CQR53381.1 - 0.15 11.9 4.4 21 5.1 0.1 3.8 3 0 0 3 3 3 0 3-alpha domain HTH_23 PF13384.6 CQR53381.1 - 0.45 10.4 3.2 7.7 6.5 0.0 3.5 4 0 0 4 4 4 0 Homeodomain-like domain SBP_bac_8 PF13416.6 CQR53383.1 - 6e-32 111.6 6.4 8e-32 111.2 6.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR53383.1 - 4.5e-30 105.7 6.1 7.3e-30 105.0 6.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR53383.1 - 1.3e-09 37.9 1.1 4.2e-05 23.1 0.1 2.8 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein DUF2347 PF09804.9 CQR53383.1 - 0.052 13.1 0.0 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2347) BPD_transp_1 PF00528.22 CQR53385.1 - 3.6e-18 65.9 19.4 3.6e-18 65.9 19.4 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR53386.1 - 1.2e-17 64.2 12.5 1.2e-17 64.2 12.5 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BatA PF07584.11 CQR53386.1 - 0.13 12.7 0.2 0.13 12.7 0.2 3.2 4 0 0 4 4 4 0 Aerotolerance regulator N-terminal DUF2834 PF11196.8 CQR53386.1 - 6.2 7.3 10.9 4.8 7.6 3.8 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2834) NanE PF04131.14 CQR53388.1 - 8e-57 191.5 0.9 9.3e-57 191.3 0.9 1.0 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 CQR53388.1 - 1.7e-07 30.9 2.1 1.7e-07 30.9 2.1 2.5 2 1 1 3 3 3 1 Nitronate monooxygenase TMP-TENI PF02581.17 CQR53388.1 - 1.7e-06 27.5 3.4 1.5e-05 24.4 0.4 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase ThiG PF05690.14 CQR53388.1 - 2.5e-06 27.0 1.5 2.5e-06 27.0 1.5 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 CQR53388.1 - 5.9e-06 25.5 1.2 1.1e-05 24.7 1.2 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 CQR53388.1 - 3.3e-05 23.4 0.2 7.7e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 CQR53388.1 - 0.00091 18.4 0.3 0.02 14.0 0.0 2.3 1 1 0 2 2 2 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 CQR53388.1 - 0.0039 16.4 0.8 0.013 14.7 0.0 2.0 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Trp_syntA PF00290.20 CQR53388.1 - 0.011 14.6 0.0 0.022 13.6 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain FMN_dh PF01070.18 CQR53388.1 - 0.012 14.7 5.1 0.033 13.2 5.1 1.9 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PcrB PF01884.17 CQR53388.1 - 0.058 12.9 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 PcrB family ROK PF00480.20 CQR53390.1 - 3.4e-63 213.9 0.1 4e-63 213.6 0.1 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 CQR53390.1 - 0.0046 16.5 0.0 0.0072 15.9 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 CQR53390.1 - 0.0051 16.4 0.2 0.12 11.9 0.2 2.2 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Hydant_A_N PF05378.13 CQR53390.1 - 0.037 13.7 0.3 0.054 13.2 0.3 1.2 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region CutC PF03932.14 CQR53392.1 - 3.2e-51 173.7 0.4 3.8e-51 173.5 0.4 1.0 1 0 0 1 1 1 1 CutC family BtpA PF03437.15 CQR53392.1 - 0.0013 18.2 0.0 0.043 13.3 0.0 2.5 1 1 0 1 1 1 1 BtpA family NMO PF03060.15 CQR53392.1 - 0.002 17.6 0.7 0.0043 16.5 0.1 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase LSDAT_prok PF18171.1 CQR53392.1 - 0.034 13.4 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 SLOG in TRPM, prokaryote Alpha_L_fucos PF01120.17 CQR53395.1 - 2.9e-104 349.3 0.4 3.7e-104 348.9 0.4 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase Fucosidase_C PF16757.5 CQR53395.1 - 2.1e-09 37.8 0.0 6.5e-09 36.2 0.0 1.8 2 0 0 2 2 2 1 Alpha-L-fucosidase C-terminal domain Peripla_BP_2 PF01497.18 CQR53397.1 - 6.2e-07 29.2 0.0 7.9e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Band_7 PF01145.25 CQR53401.1 - 7.5e-16 58.6 4.2 7.5e-16 58.6 4.2 2.1 1 1 1 2 2 2 1 SPFH domain / Band 7 family PepX_C PF08530.10 CQR53401.1 - 0.023 14.7 0.1 0.034 14.1 0.1 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain NAD_kinase PF01513.21 CQR53402.1 - 0.0008 18.7 0.1 0.0031 16.8 0.1 1.8 1 1 0 1 1 1 1 ATP-NAD kinase Exonuc_VII_L PF02601.15 CQR53404.1 - 0.021 14.4 7.3 0.022 14.3 7.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Cob_adeno_trans PF01923.18 CQR53404.1 - 0.024 14.8 2.3 0.03 14.4 2.3 1.1 1 0 0 1 1 1 0 Cobalamin adenosyltransferase AIP3 PF03915.13 CQR53404.1 - 0.054 12.6 7.4 0.056 12.5 7.4 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 MCPsignal PF00015.21 CQR53404.1 - 0.083 12.7 7.6 0.12 12.2 7.6 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain EzrA PF06160.12 CQR53404.1 - 0.094 10.9 12.5 0.12 10.5 12.5 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA UvrD_C PF13361.6 CQR53404.1 - 0.1 11.9 3.8 0.14 11.5 3.8 1.1 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DUF848 PF05852.11 CQR53404.1 - 0.43 10.7 9.8 0.59 10.2 4.1 2.0 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF948 PF06103.11 CQR53404.1 - 0.99 9.7 8.2 0.46 10.8 3.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.12 CQR53404.1 - 1.2 9.2 22.2 5.5 7.1 22.2 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein LMBR1 PF04791.16 CQR53404.1 - 1.4 7.8 6.0 1.6 7.5 6.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF745 PF05335.13 CQR53404.1 - 1.4 8.6 19.0 2.2 8.0 19.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) CENP-H PF05837.12 CQR53404.1 - 1.5 9.3 14.1 2.1 8.8 14.1 1.2 1 0 0 1 1 1 0 Centromere protein H (CENP-H) AI-2E_transport PF01594.16 CQR53404.1 - 2.2 7.3 3.9 2.9 7.0 3.9 1.2 1 0 0 1 1 1 0 AI-2E family transporter FapA PF03961.13 CQR53404.1 - 3 6.4 7.3 3.3 6.2 7.3 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A MAD PF05557.13 CQR53404.1 - 3.8 5.7 16.4 4.8 5.4 16.4 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein BLOC1_2 PF10046.9 CQR53404.1 - 5.9 7.3 12.8 2 8.8 4.5 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YkuD PF03734.14 CQR53406.1 - 2.9e-22 79.6 0.2 2.9e-22 79.6 0.2 1.4 2 0 0 2 2 2 1 L,D-transpeptidase catalytic domain Cu_amine_oxidN1 PF07833.11 CQR53406.1 - 2.5e-14 53.5 0.1 2.5e-12 47.1 0.0 1.9 1 1 1 2 2 2 2 Copper amine oxidase N-terminal domain Acetyltransf_1 PF00583.25 CQR53407.1 - 6.7e-10 39.2 0.0 8.1e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR53407.1 - 1.9e-06 27.9 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53407.1 - 6.3e-06 26.5 0.0 1e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR53407.1 - 1.1e-05 26.1 0.0 1.4e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR53407.1 - 0.015 15.4 0.0 0.025 14.6 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53407.1 - 0.018 15.0 0.0 0.032 14.2 0.0 1.5 1 1 0 1 1 1 0 FR47-like protein Flu_C_NS1 PF03506.13 CQR53407.1 - 0.092 12.7 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Influenza C non-structural protein (NS1) Acetyltransf_CG PF14542.6 CQR53407.1 - 0.1 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase UPF0054 PF02130.17 CQR53407.1 - 0.17 11.7 0.0 0.22 11.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein family UPF0054 SNARE_assoc PF09335.11 CQR53409.1 - 0.0088 16.5 1.1 0.013 16.0 1.0 1.3 1 1 0 1 1 1 1 SNARE associated Golgi protein ABC_tran PF00005.27 CQR53411.1 - 2.4e-48 164.1 0.0 5.2e-23 82.1 0.0 3.0 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 CQR53411.1 - 2.2e-18 67.1 0.8 4.1e-05 23.5 0.0 4.5 4 1 1 5 5 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53411.1 - 2.5e-08 33.7 0.0 0.019 14.4 0.0 4.0 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR53411.1 - 3.2e-08 33.2 0.5 0.0026 17.5 0.0 2.8 3 0 0 3 3 2 2 P-loop containing region of AAA domain ABC_tran_Xtn PF12848.7 CQR53411.1 - 1.4e-07 31.5 15.1 4.4e-06 26.6 13.3 3.4 2 1 0 2 2 2 1 ABC transporter AAA_22 PF13401.6 CQR53411.1 - 1.1e-06 28.9 0.6 0.48 10.7 0.1 4.3 3 1 0 3 3 3 2 AAA domain NACHT PF05729.12 CQR53411.1 - 2.7e-06 27.4 1.7 0.21 11.5 0.0 3.9 4 0 0 4 4 4 2 NACHT domain RsgA_GTPase PF03193.16 CQR53411.1 - 2.1e-05 24.5 0.0 0.083 12.8 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 CQR53411.1 - 3.3e-05 24.5 9.9 0.026 15.0 0.0 3.7 4 0 0 4 4 3 2 AAA domain AAA_25 PF13481.6 CQR53411.1 - 4.2e-05 23.2 0.0 0.31 10.6 0.0 3.6 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.6 CQR53411.1 - 5.2e-05 23.7 4.9 0.054 13.9 0.0 3.3 3 1 0 3 3 3 2 AAA ATPase domain AAA_30 PF13604.6 CQR53411.1 - 0.00052 19.8 0.3 0.28 10.9 0.0 3.5 4 0 0 4 4 4 1 AAA domain AAA_24 PF13479.6 CQR53411.1 - 0.0014 18.4 0.0 1.5 8.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.25 CQR53411.1 - 0.0018 18.0 0.0 0.22 11.1 0.0 2.8 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.23 CQR53411.1 - 0.0031 17.6 0.0 1.9 8.6 0.0 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.6 CQR53411.1 - 0.0043 16.8 0.0 2.2 7.9 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 CQR53411.1 - 0.012 15.8 2.0 5 7.3 0.0 3.2 4 0 0 4 4 3 0 AAA domain AAA PF00004.29 CQR53411.1 - 0.012 16.0 0.1 5.8 7.3 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 CQR53411.1 - 0.013 15.5 0.2 3.2 7.8 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE STAS_2 PF13466.6 CQR53411.1 - 0.014 15.7 0.8 0.036 14.4 0.1 2.1 2 0 0 2 2 1 0 STAS domain RNA_helicase PF00910.22 CQR53411.1 - 0.015 15.7 0.0 8.1 6.9 0.0 2.3 2 0 0 2 2 2 0 RNA helicase SbcCD_C PF13558.6 CQR53411.1 - 0.017 15.4 0.1 2.8 8.2 0.0 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 CQR53411.1 - 0.017 15.0 0.0 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 CQR53411.1 - 0.029 14.4 0.3 6.7 6.7 0.0 3.0 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 CQR53411.1 - 0.031 14.5 0.4 4.5 7.5 0.0 3.2 3 0 0 3 3 2 0 AAA domain NTPase_1 PF03266.15 CQR53411.1 - 0.037 13.9 0.0 6.1 6.7 0.0 2.6 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 CQR53411.1 - 0.06 13.4 0.0 13 5.8 0.0 3.4 4 0 0 4 4 3 0 AAA domain DUF4350 PF14258.6 CQR53411.1 - 0.076 13.5 0.3 18 5.9 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) AAA_7 PF12775.7 CQR53411.1 - 0.078 12.5 0.0 5 6.6 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_27 PF13514.6 CQR53411.1 - 0.079 12.5 3.7 0.43 10.1 0.1 2.7 3 0 0 3 3 2 0 AAA domain AAA_13 PF13166.6 CQR53411.1 - 0.086 11.5 4.7 5.7 5.4 0.0 3.4 4 0 0 4 4 4 0 AAA domain Mg_chelatase PF01078.21 CQR53411.1 - 0.13 11.6 0.1 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 CQR53411.1 - 0.13 12.0 0.1 30 4.3 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein PduV-EutP PF10662.9 CQR53411.1 - 0.16 11.7 0.2 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 CQR53411.1 - 0.17 11.0 0.1 10 5.2 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Dynamin_N PF00350.23 CQR53411.1 - 0.2 11.7 0.9 13 5.8 0.0 3.1 3 0 0 3 3 3 0 Dynamin family Roc PF08477.13 CQR53411.1 - 0.23 11.7 0.6 40 4.5 0.0 3.0 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase 7tm_6 PF02949.20 CQR53411.1 - 0.7 8.9 1.8 1.1 8.3 1.4 1.5 2 0 0 2 2 2 0 7tm Odorant receptor DUF87 PF01935.17 CQR53411.1 - 1.5 8.9 0.0 1.5 8.9 0.0 2.4 3 0 0 3 3 2 0 Helicase HerA, central domain DUF2206 PF09971.9 CQR53413.1 - 0.024 13.4 0.1 0.028 13.2 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) MG4 PF17789.1 CQR53413.1 - 0.49 10.6 3.3 0.66 10.2 0.2 2.2 2 1 0 2 2 2 0 Macroglobulin domain MG4 Hydrolase_4 PF12146.8 CQR53415.1 - 2.5e-07 30.2 0.0 0.00047 19.5 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR53415.1 - 0.00012 22.8 0.0 0.00053 20.7 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family NPBW PF15180.6 CQR53415.1 - 0.046 13.6 0.1 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 Neuropeptides B and W MerR_1 PF13411.6 CQR53417.1 - 2.8e-15 56.1 0.0 6.6e-15 55.0 0.0 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR53417.1 - 2.2e-11 43.3 0.1 4.5e-11 42.3 0.1 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR53417.1 - 0.0002 21.8 0.9 0.00034 21.1 0.9 1.4 1 0 0 1 1 1 1 MerR, DNA binding DUF1836 PF08876.11 CQR53417.1 - 0.029 14.4 0.6 0.086 12.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1836) Dict-STAT-coil PF09267.10 CQR53417.1 - 0.036 14.4 1.2 0.053 13.9 0.5 1.6 2 0 0 2 2 2 0 Dictyostelium STAT, coiled coil CHB_HEX_C_1 PF13290.6 CQR53419.1 - 4.7e-141 459.0 96.2 1e-21 76.7 3.4 11.4 12 0 0 12 12 11 7 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 CQR53419.1 - 7.5e-118 384.7 48.8 5.6e-17 61.7 0.5 9.4 10 0 0 10 10 10 7 Fn3 associated CHB_HEX_C PF03174.13 CQR53419.1 - 1.3e-34 118.0 24.9 0.00056 19.8 0.1 9.0 9 0 0 9 9 9 7 Chitobiase/beta-hexosaminidase C-terminal domain SLH PF00395.20 CQR53419.1 - 2.9e-33 113.6 5.6 1.3e-12 47.5 0.1 3.7 3 0 0 3 3 3 3 S-layer homology domain CBM_X2 PF03442.14 CQR53419.1 - 5.6e-29 100.1 3.0 5.6e-29 100.1 3.0 2.6 2 0 0 2 2 2 1 Carbohydrate binding domain X2 fn3 PF00041.21 CQR53419.1 - 2.3e-15 56.7 6.8 1.2e-09 38.3 0.5 4.7 4 0 0 4 4 4 2 Fibronectin type III domain GreA_GreB PF01272.19 CQR53419.1 - 6e-05 22.9 0.0 59 3.7 0.0 6.9 7 0 0 7 7 7 0 Transcription elongation factor, GreA/GreB, C-term DUF4959 PF16323.5 CQR53419.1 - 0.0071 16.7 0.4 0.0071 16.7 0.4 4.1 4 2 1 5 5 5 1 Domain of unknown function (DUF4959) Sortilin-Vps10 PF15902.5 CQR53419.1 - 0.0091 14.8 10.3 0.23 10.2 0.1 4.1 3 1 1 4 4 4 2 Sortilin, neurotensin receptor 3, BNR_2 PF13088.6 CQR53419.1 - 0.97 8.7 11.2 0.26 10.6 2.0 3.5 2 2 0 3 3 3 0 BNR repeat-like domain Pur_ac_phosph_N PF16656.5 CQR53419.1 - 1.5 9.5 12.8 2.2 8.9 0.8 4.7 4 1 0 4 4 4 0 Purple acid Phosphatase, N-terminal domain DUF4309 PF14172.6 CQR53421.1 - 1.6e-41 141.4 0.1 2e-41 141.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4309) DUF1631 PF07793.11 CQR53421.1 - 0.42 9.0 3.7 0.45 8.9 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DUF1180 PF06679.12 CQR53421.1 - 5.4 7.4 7.7 8.8 6.7 7.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Trans_reg_C PF00486.28 CQR53423.1 - 5.9e-22 77.5 0.1 1.1e-21 76.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal TPR_14 PF13428.6 CQR53423.1 - 0.021 15.6 0.1 88 4.3 0.0 3.6 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 CQR53423.1 - 0.12 12.6 0.4 6 7.2 0.1 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat MFS_1 PF07690.16 CQR53425.1 - 5.3e-36 124.3 58.4 1.2e-28 100.1 29.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR53425.1 - 5.4e-18 64.7 21.7 7.3e-18 64.2 21.7 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector FPN1 PF06963.12 CQR53425.1 - 0.95 8.0 12.7 1.2 7.6 5.5 2.9 2 1 0 2 2 2 0 Ferroportin1 (FPN1) His_Phos_1 PF00300.22 CQR53427.1 - 1.2e-27 96.9 0.0 1.4e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) TusA PF01206.17 CQR53427.1 - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA Radical_SAM PF04055.21 CQR53429.1 - 1.2e-13 51.8 0.0 3.2e-12 47.2 0.0 2.5 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 CQR53429.1 - 6.5e-11 42.3 0.0 4.2e-10 39.7 0.0 2.2 2 1 1 3 3 3 1 B12 binding domain DUF4070 PF13282.6 CQR53429.1 - 3.1e-06 27.4 0.2 6.3e-06 26.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4070) TatD_DNase PF01026.21 CQR53432.1 - 1.5e-43 149.1 0.0 1.7e-43 148.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 CQR53432.1 - 7.9e-05 22.1 1.7 0.062 12.6 1.7 3.1 1 1 0 1 1 1 1 Amidohydrolase family Cu_amine_oxidN1 PF07833.11 CQR53433.1 - 6.7e-08 32.9 0.0 1.6e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain LysR_substrate PF03466.20 CQR53435.1 - 8.9e-43 146.1 0.0 1.1e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR53435.1 - 7.6e-21 73.8 0.0 1.5e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR53435.1 - 0.00012 21.8 0.0 0.00023 20.9 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain PBP_like PF12727.7 CQR53435.1 - 0.0042 16.2 0.0 1.8 7.7 0.0 2.4 2 1 0 2 2 2 2 PBP superfamily domain HTH_28 PF13518.6 CQR53435.1 - 0.017 15.2 0.0 0.048 13.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 CQR53435.1 - 0.02 14.4 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR53435.1 - 0.025 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR PF01047.22 CQR53435.1 - 0.04 13.8 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_50 PF18024.1 CQR53435.1 - 0.12 12.0 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PBP_like_2 PF12849.7 CQR53435.1 - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 PBP superfamily domain HTH_23 PF13384.6 CQR53435.1 - 0.16 11.8 0.0 0.46 10.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Methyltransf_3 PF01596.17 CQR53437.1 - 7.2e-37 126.6 0.0 8.8e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 CQR53437.1 - 3.9e-15 56.8 0.0 6.8e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 CQR53437.1 - 2.1e-08 34.2 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 CQR53437.1 - 0.00019 21.3 0.0 0.00097 19.0 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain GCD14 PF08704.10 CQR53437.1 - 0.03 14.0 0.0 0.04 13.6 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 CQR53437.1 - 0.098 13.4 0.0 0.41 11.4 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 CQR53437.1 - 0.13 11.8 0.0 0.31 10.6 0.0 1.6 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Sigma70_r4_2 PF08281.12 CQR53440.1 - 2.3e-16 59.2 0.2 4.3e-16 58.3 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR53440.1 - 6.4e-15 54.4 0.2 1.3e-14 53.4 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR53440.1 - 2.5e-11 43.2 0.7 2.5e-11 43.2 0.7 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 HTH_23 PF13384.6 CQR53440.1 - 7.2e-06 25.6 1.5 6.5e-05 22.6 0.2 2.5 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_ECF PF07638.11 CQR53440.1 - 0.00016 21.6 0.7 0.00061 19.7 0.7 1.8 1 1 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.6 CQR53440.1 - 0.0025 17.9 0.2 0.0025 17.9 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 CQR53440.1 - 0.018 14.6 0.2 0.042 13.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Flagellin_C PF00700.21 CQR53440.1 - 0.034 14.5 0.1 4.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region DUF134 PF02001.16 CQR53440.1 - 0.086 13.4 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 Peptidase_S6 PF02395.16 CQR53440.1 - 0.17 9.9 0.0 0.22 9.5 0.0 1.0 1 0 0 1 1 1 0 Immunoglobulin A1 protease DUF3600 PF12207.8 CQR53442.1 - 5.2e-17 62.2 1.3 8.4e-14 51.8 0.3 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3600) CDC37_C PF08564.10 CQR53442.1 - 0.033 14.3 0.3 0.23 11.6 0.1 2.2 2 0 0 2 2 2 0 Cdc37 C terminal domain F_actin_bind PF08919.10 CQR53442.1 - 0.079 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 F-actin binding Hpt PF01627.23 CQR53442.1 - 0.11 12.8 0.3 0.57 10.5 0.1 2.2 2 0 0 2 2 2 0 Hpt domain Het-C PF07217.11 CQR53442.1 - 0.12 10.9 0.1 0.16 10.5 0.1 1.2 1 1 0 1 1 1 0 Heterokaryon incompatibility protein Het-C AbiJ_NTD3 PF18860.1 CQR53442.1 - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 AbiJ N-terminal domain 3 Swi5 PF07061.11 CQR53442.1 - 0.43 10.7 2.8 6.1 7.0 0.1 2.9 3 1 0 3 3 3 0 Swi5 SpoOE-like PF09388.10 CQR53443.1 - 1.8e-13 50.1 0.8 2.3e-13 49.8 0.8 1.2 1 0 0 1 1 1 1 Spo0E like sporulation regulatory protein HGAL PF15666.5 CQR53443.1 - 0.043 13.9 0.1 0.048 13.8 0.1 1.2 1 0 0 1 1 1 0 Germinal center-associated lymphoma TetR_C_11 PF16859.5 CQR53445.1 - 2.3e-31 108.4 0.0 9.2e-31 106.5 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR53445.1 - 8.8e-13 47.8 0.0 1.6e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 CQR53445.1 - 0.00043 20.3 0.1 0.0026 17.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Tnp_1_2 PF13022.6 CQR53445.1 - 0.0011 19.1 0.0 0.0022 18.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_11 PF08279.12 CQR53445.1 - 0.011 15.7 0.0 0.034 14.1 0.0 1.8 2 0 0 2 2 2 0 HTH domain TetR_C_7 PF14246.6 CQR53445.1 - 0.012 15.6 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain TrmB PF01978.19 CQR53445.1 - 0.024 14.5 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.7 CQR53445.1 - 0.027 14.7 0.0 0.073 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AT_hook PF02178.19 CQR53445.1 - 0.03 14.2 0.3 0.063 13.2 0.3 1.6 1 0 0 1 1 1 0 AT hook motif HTH_23 PF13384.6 CQR53445.1 - 0.052 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_22 PF13309.6 CQR53445.1 - 0.065 13.3 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_32 PF13565.6 CQR53445.1 - 0.071 13.7 0.1 0.24 12.1 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 CQR53445.1 - 0.085 12.9 0.2 0.36 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_DeoR PF08220.12 CQR53445.1 - 0.17 11.7 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MFS_1 PF07690.16 CQR53447.1 - 6.7e-41 140.4 74.0 7.6e-29 100.7 39.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR53447.1 - 1.6e-07 30.9 37.8 2.3e-07 30.4 37.8 1.2 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF4367 PF14285.6 CQR53450.1 - 1.1e-07 32.3 0.2 1.2e-07 32.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4367) MCPsignal PF00015.21 CQR53451.1 - 1.4e-35 122.6 44.4 2.2e-34 118.7 21.9 3.9 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR53451.1 - 1.9e-19 70.5 1.2 1.9e-19 70.5 1.2 4.5 2 2 2 4 4 4 2 Cache domain HAMP PF00672.25 CQR53451.1 - 9.5e-10 38.7 0.8 1.7e-08 34.7 0.0 3.5 5 0 0 5 5 5 1 HAMP domain kleA_kleC PF17383.2 CQR53451.1 - 0.089 13.1 1.2 3 8.2 0.3 3.5 3 1 0 3 3 3 0 Uncharacterized KorC regulated protein A BLOC1_2 PF10046.9 CQR53451.1 - 1.5 9.2 30.3 8.1 6.8 1.3 5.9 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1722 PF08349.11 CQR53451.1 - 1.6 9.0 4.4 8 6.8 0.2 3.7 4 1 0 4 4 4 0 Protein of unknown function (DUF1722) IES5 PF17335.2 CQR53451.1 - 2.5 8.4 7.4 0.53 10.6 0.8 3.0 2 1 1 3 3 3 0 Ino80 complex subunit 5 DUF2533 PF10752.9 CQR53451.1 - 3 8.3 14.7 3.2 8.2 2.8 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF2533) Yuri_gagarin PF15934.5 CQR53451.1 - 3.8 7.3 16.0 11 5.7 1.0 3.4 1 1 2 3 3 3 0 Yuri gagarin TPR_22 PF18833.1 CQR53451.1 - 3.8 7.7 6.3 1 9.5 0.3 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2379 PF09543.10 CQR53451.1 - 3.9 7.7 8.7 0.53 10.5 0.9 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2379) FtsX PF02687.21 CQR53451.1 - 5.2 7.6 6.9 4.2 7.9 1.5 2.6 2 1 0 2 2 2 0 FtsX-like permease family Cep57_MT_bd PF06657.13 CQR53451.1 - 7 7.2 7.3 11 6.5 0.8 3.9 4 2 0 4 4 3 0 Centrosome microtubule-binding domain of Cep57 GAS PF13851.6 CQR53451.1 - 7.9 5.8 22.4 0.26 10.6 6.7 3.1 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4367 PF14285.6 CQR53453.1 - 2.8e-07 31.0 2.9 9.5e-06 26.0 0.0 3.7 3 1 0 3 3 3 1 Domain of unknown function (DUF4367) Cupredoxin_1 PF13473.6 CQR53453.1 - 0.1 12.7 0.3 0.4 10.8 0.3 2.0 1 0 0 1 1 1 0 Cupredoxin-like domain Ala_racemase_N PF01168.20 CQR53455.1 - 2.2e-63 213.9 0.0 2.9e-63 213.5 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 CQR53455.1 - 2.3e-44 150.2 0.5 3.9e-44 149.4 0.5 1.4 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain PAAR_motif PF05488.13 CQR53455.1 - 0.031 14.4 0.1 0.079 13.1 0.1 1.6 1 0 0 1 1 1 0 PAAR motif Arteri_nsp7a PF16749.5 CQR53455.1 - 0.13 12.4 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Arterivirus nonstructural protein 7 alpha RHH_1 PF01402.21 CQR53458.1 - 1.6e-05 24.6 0.7 2.9e-05 23.8 0.7 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 CQR53458.1 - 7.8e-05 22.8 0.0 0.00018 21.6 0.1 1.6 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system VapB_antitoxin PF09957.9 CQR53458.1 - 0.012 15.5 0.2 0.031 14.2 0.1 1.7 2 1 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB RHH_3 PF12651.7 CQR53458.1 - 0.017 15.1 0.1 0.096 12.7 0.1 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix domain RHH_5 PF07878.11 CQR53458.1 - 0.018 14.9 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Focal_AT PF03623.13 CQR53458.1 - 0.068 13.2 1.1 0.082 12.9 1.1 1.1 1 0 0 1 1 1 0 Focal adhesion targeting region RHH_8 PF17723.1 CQR53458.1 - 0.072 13.3 0.1 0.08 13.1 0.1 1.2 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family PemK_toxin PF02452.17 CQR53460.1 - 4.5e-33 114.0 0.1 5e-33 113.8 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system SBP_bac_1 PF01547.25 CQR53461.1 - 1.4e-42 146.8 6.5 1.9e-42 146.4 6.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR53461.1 - 5.9e-38 131.3 5.0 6.4e-38 131.2 4.4 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR53461.1 - 1.8e-08 34.1 0.4 0.00046 19.7 0.1 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR53461.1 - 8.5e-06 25.7 0.1 0.00063 19.6 0.0 2.7 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein LPAM_1 PF08139.12 CQR53461.1 - 0.11 13.0 2.3 0.26 11.9 2.3 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.22 CQR53462.1 - 8.8e-17 61.4 21.5 8.8e-17 61.4 21.5 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Gsf2 PF11055.8 CQR53462.1 - 0.17 10.6 1.3 0.27 9.9 1.3 1.2 1 0 0 1 1 1 0 Glucose signalling factor 2 BPD_transp_1 PF00528.22 CQR53464.1 - 1e-14 54.7 13.6 1e-14 54.7 13.6 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component PfkB PF00294.24 CQR53467.1 - 1.7e-35 122.8 0.0 2.2e-35 122.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase XdhC_C PF13478.6 CQR53467.1 - 0.14 12.7 0.0 0.42 11.1 0.0 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain UTRA PF07702.13 CQR53469.1 - 8.5e-25 87.2 0.0 1.2e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 CQR53469.1 - 7.1e-20 70.4 0.1 2.6e-19 68.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 CQR53469.1 - 0.00013 21.8 0.1 0.0011 18.8 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 CQR53469.1 - 0.00025 20.7 0.1 0.0061 16.3 0.0 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 CQR53469.1 - 0.0043 17.0 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_36 PF13730.6 CQR53469.1 - 0.0049 16.8 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 CQR53469.1 - 0.0058 17.1 0.0 0.043 14.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR53469.1 - 0.0066 16.0 0.4 0.027 14.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 CQR53469.1 - 0.013 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_41 PF14502.6 CQR53469.1 - 0.017 14.8 0.0 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 CQR53469.1 - 0.023 15.0 0.0 0.054 13.8 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor PaaX PF07848.12 CQR53469.1 - 0.024 14.9 0.0 0.068 13.4 0.0 1.7 2 0 0 2 2 2 0 PaaX-like protein Fe_dep_repress PF01325.19 CQR53469.1 - 0.03 14.5 0.1 4 7.7 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.11 CQR53469.1 - 0.062 13.3 0.0 0.19 11.8 0.0 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 CQR53469.1 - 0.064 13.4 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 CQR53469.1 - 0.079 13.3 0.1 0.32 11.4 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Phage_rep_O PF04492.13 CQR53469.1 - 0.12 13.0 0.0 0.3 11.7 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage replication protein O TrmB PF01978.19 CQR53469.1 - 0.14 12.1 0.1 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB SIS PF01380.22 CQR53471.1 - 1.5e-18 66.9 0.0 5.4e-11 42.5 0.0 2.2 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 CQR53471.1 - 0.0027 17.8 0.1 0.033 14.2 0.0 2.5 2 1 0 3 3 3 1 SIS domain Nucleolin_bd PF16725.5 CQR53473.1 - 0.064 12.9 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Nucleolin binding domain DUF4363 PF14276.6 CQR53473.1 - 0.077 13.1 0.4 0.25 11.5 0.1 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4363) TetR_C_5 PF08360.11 CQR53475.1 - 2.1e-16 60.3 0.0 2.6e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 QacR-like protein, C-terminal region TetR_N PF00440.23 CQR53475.1 - 1.3e-10 40.9 0.2 3e-10 39.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 CQR53475.1 - 0.0025 18.1 0.1 0.0058 16.9 0.1 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TPR_14 PF13428.6 CQR53475.1 - 0.0078 16.9 2.6 0.39 11.6 0.3 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat DUF3463 PF11946.8 CQR53475.1 - 0.021 14.7 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) VWA_3 PF13768.6 CQR53475.1 - 0.053 13.5 0.0 0.088 12.8 0.0 1.4 1 1 0 1 1 1 0 von Willebrand factor type A domain TetR_C_24 PF17932.1 CQR53475.1 - 0.073 13.3 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 CQR53475.1 - 0.079 13.1 0.0 0.18 12.0 0.0 1.6 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF1987 PF09345.10 CQR53475.1 - 0.096 12.4 0.0 0.26 11.0 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1987) TetR_C_6 PF13977.6 CQR53475.1 - 0.1 12.8 0.2 0.1 12.8 0.2 1.5 2 0 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal MFS_1 PF07690.16 CQR53477.1 - 2.7e-61 207.5 42.4 2.8e-46 158.0 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR53477.1 - 4e-20 72.0 25.7 3e-09 36.2 8.3 3.1 1 1 2 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 CQR53477.1 - 7.9e-14 51.4 32.6 9.8e-13 47.8 13.9 3.4 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 CQR53477.1 - 9.3e-12 44.2 29.9 5.5e-07 28.5 9.0 2.8 1 1 2 3 3 3 2 MFS/sugar transport protein LacY_symp PF01306.19 CQR53477.1 - 3.1e-10 39.4 20.2 7.5e-08 31.6 16.6 2.1 1 1 1 2 2 2 2 LacY proton/sugar symporter MFS_4 PF06779.14 CQR53477.1 - 9.6e-10 38.3 27.5 2e-09 37.3 27.5 1.4 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_3 PF05977.13 CQR53477.1 - 8.3e-08 31.1 16.0 8.3e-08 31.1 16.0 2.2 1 1 1 2 2 2 1 Transmembrane secretion effector OATP PF03137.20 CQR53477.1 - 5.7e-05 21.6 26.6 0.0041 15.5 2.0 4.2 1 1 3 4 4 4 4 Organic Anion Transporter Polypeptide (OATP) family PUCC PF03209.15 CQR53477.1 - 0.0008 18.5 22.4 0.005 15.9 22.3 1.9 1 1 0 1 1 1 1 PUCC protein UNC-93 PF05978.16 CQR53477.1 - 0.0096 15.7 1.5 0.0096 15.7 1.5 2.3 2 0 0 2 2 2 1 Ion channel regulatory protein UNC-93 DUF2964 PF11177.8 CQR53477.1 - 0.013 15.7 0.2 0.013 15.7 0.2 3.5 4 1 0 4 4 3 0 Protein of unknown function (DUF2964) Phage_Coat_B PF05356.11 CQR53477.1 - 1.2 9.1 8.2 3.3 7.7 0.2 3.6 2 1 1 3 3 3 0 Phage Coat protein B Tex_N PF09371.10 CQR53480.1 - 2.9e-73 245.4 3.0 5.7e-73 244.5 3.0 1.5 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 CQR53480.1 - 4e-52 175.9 0.1 4e-52 175.9 0.1 2.1 3 0 0 3 3 2 1 Tex protein YqgF-like domain HHH_3 PF12836.7 CQR53480.1 - 3.6e-28 97.6 0.1 1.1e-27 96.1 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_9 PF17674.1 CQR53480.1 - 1.3e-21 77.2 2.5 9.6e-21 74.5 0.0 3.3 3 0 0 3 3 3 1 HHH domain S1 PF00575.23 CQR53480.1 - 1.2e-15 57.6 1.6 2.1e-14 53.6 0.5 2.5 2 0 0 2 2 2 1 S1 RNA binding domain HHH_7 PF14635.6 CQR53480.1 - 3.9e-09 36.8 0.1 1.1e-07 32.1 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif YqgF PF14639.6 CQR53480.1 - 2.7e-06 27.2 0.1 9.3e-06 25.5 0.0 2.0 2 0 0 2 2 2 1 Holliday-junction resolvase-like of SPT6 E3_binding PF02817.17 CQR53480.1 - 0.0091 16.3 0.6 5.5 7.4 0.0 4.0 4 0 0 4 4 4 1 e3 binding domain RuvX PF03652.15 CQR53480.1 - 0.016 15.6 0.0 0.055 13.8 0.0 2.0 1 0 0 1 1 1 0 Holliday junction resolvase HHH_6 PF14579.6 CQR53480.1 - 0.051 13.8 0.0 0.23 11.7 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif SKA1 PF07160.12 CQR53480.1 - 0.055 13.3 0.3 0.099 12.5 0.3 1.4 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 HTH_29 PF13551.6 CQR53480.1 - 0.069 13.2 0.0 1.1 9.3 0.0 2.8 3 0 0 3 3 2 0 Winged helix-turn helix Histone_HNS PF00816.21 CQR53480.1 - 1.7 9.5 8.9 7 7.5 0.0 3.8 4 0 0 4 4 3 0 H-NS histone family Acetyltransf_1 PF00583.25 CQR53482.1 - 8e-14 51.9 0.2 2.1e-13 50.5 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR53482.1 - 1.3e-10 41.3 0.0 3.4e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53482.1 - 6.4e-09 36.1 0.0 1.7e-08 34.8 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53482.1 - 2.7e-06 27.3 0.2 7.1e-06 25.9 0.1 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 CQR53482.1 - 3.1e-06 27.9 0.2 1.1e-05 26.2 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 CQR53482.1 - 4.7e-06 26.3 0.0 1.3e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 CQR53482.1 - 0.006 16.7 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 CQR53482.1 - 0.0074 16.4 0.0 0.087 12.9 0.0 2.6 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR53482.1 - 0.046 13.9 0.0 0.31 11.2 0.0 2.3 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain GntP_permease PF02447.16 CQR53484.1 - 1.2e-26 93.4 53.0 1.9e-26 92.8 53.0 1.2 1 1 0 1 1 1 1 GntP family permease CitMHS PF03600.16 CQR53484.1 - 1.1e-13 51.1 43.1 1.7e-13 50.5 43.1 1.3 1 0 0 1 1 1 1 Citrate transporter Na_H_antiporter PF03553.14 CQR53484.1 - 2.5e-09 36.8 50.2 1.9e-06 27.4 22.3 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family DctM PF06808.12 CQR53484.1 - 5.1e-07 28.9 13.4 5.1e-07 28.9 13.4 2.1 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component Na_H_antiport_2 PF13726.6 CQR53484.1 - 8.4e-06 25.8 10.4 8.4e-06 25.8 10.4 4.0 4 1 0 4 4 4 2 Na+-H+ antiporter family Lactate_perm PF02652.14 CQR53484.1 - 0.0037 16.1 20.9 0.0037 16.1 20.9 2.9 1 1 1 3 3 3 1 L-lactate permease Gly_kinase PF02595.15 CQR53486.1 - 6.3e-151 502.5 11.0 7.1e-151 502.3 11.0 1.0 1 0 0 1 1 1 1 Glycerate kinase family Diacid_rec PF05651.13 CQR53487.1 - 3.1e-42 143.4 0.5 5.2e-42 142.7 0.5 1.4 1 0 0 1 1 1 1 Putative sugar diacid recognition HTH_30 PF13556.6 CQR53487.1 - 3.2e-19 68.5 0.9 9.7e-19 66.9 0.9 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 CQR53487.1 - 0.001 18.8 0.0 0.0025 17.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family MMS19_N PF14500.6 CQR53487.1 - 0.013 15.1 0.2 1.1 8.8 0.0 2.3 2 1 0 2 2 2 0 Dos2-interacting transcription regulator of RNA-Pol-II DMRT-like PF15791.5 CQR53487.1 - 0.03 14.8 0.2 0.052 14.0 0.2 1.4 1 0 0 1 1 1 0 Doublesex-and mab-3-related transcription factor C1 and C2 sCache_like PF16736.5 CQR53487.1 - 0.07 13.2 0.1 0.35 11.0 0.0 2.1 2 0 0 2 2 2 0 Single Cache-like FAP PF07174.11 CQR53488.1 - 4.3 6.7 24.2 5.8 6.3 24.2 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) SOG2 PF10428.9 CQR53488.1 - 8.1 5.5 10.7 10 5.2 10.7 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein SLH PF00395.20 CQR53490.1 - 5.2e-18 64.8 1.6 5.4e-06 26.3 0.1 3.8 3 1 0 3 3 3 3 S-layer homology domain PrcB_C PF14343.6 CQR53490.1 - 0.0048 17.0 0.0 0.016 15.3 0.0 1.8 1 0 0 1 1 1 1 PrcB C-terminal GTP_EFTU PF00009.27 CQR53492.1 - 2.7e-55 186.9 0.0 4.1e-55 186.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 CQR53492.1 - 6.8e-21 74.1 0.1 1.8e-20 72.8 0.0 1.8 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.18 CQR53492.1 - 7.5e-15 54.8 0.0 2.7e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 CQR53492.1 - 4.1e-08 33.2 0.0 7e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 CQR53492.1 - 2.5e-06 27.8 3.5 5.5e-06 26.7 3.5 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 CQR53492.1 - 4.8e-05 23.4 0.0 8.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.16 CQR53492.1 - 0.13 11.5 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 AIG1 family RAMPs PF03787.15 CQR53495.1 - 4e-12 46.6 0.2 4e-12 46.6 0.2 2.1 2 1 0 2 2 2 1 RAMP superfamily DUF3692 PF12469.8 CQR53497.1 - 1.1e-18 67.4 0.0 5.6e-18 65.2 0.0 2.2 2 1 0 2 2 2 1 CRISPR-associated protein mCpol PF18182.1 CQR53497.1 - 0.00029 21.1 0.1 0.0044 17.3 0.0 2.7 2 1 0 2 2 2 1 minimal CRISPR polymerase domain GGDEF PF00990.21 CQR53497.1 - 0.061 13.1 0.0 0.19 11.5 0.0 1.9 1 0 0 1 1 1 0 Diguanylate cyclase, GGDEF domain Cas_Cmr3 PF09700.10 CQR53499.1 - 1.2e-80 271.8 0.2 1.3e-80 271.6 0.2 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) RAMPs PF03787.15 CQR53501.1 - 4.4e-21 75.9 0.0 6e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily DUF508 PF04370.12 CQR53501.1 - 0.17 11.6 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF508) Cas_Cmr5 PF09701.10 CQR53503.1 - 1.8e-19 70.2 0.3 4.5e-19 68.9 0.3 1.6 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.15 CQR53505.1 - 4.1e-13 49.8 0.0 8.4e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 RAMP superfamily Arm-DNA-bind_2 PF12167.8 CQR53507.1 - 0.029 14.3 0.3 0.16 11.9 0.0 2.3 2 0 0 2 2 2 0 Arm DNA-binding domain DEAD PF00270.29 CQR53508.1 - 6e-11 42.4 0.3 1.5e-10 41.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 CQR53508.1 - 1.2e-09 38.5 1.2 1.7e-09 37.9 0.2 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 CQR53508.1 - 1.2e-06 28.8 1.6 2.8e-06 27.6 0.1 2.5 3 1 0 3 3 3 1 Helicase conserved C-terminal domain HD PF01966.22 CQR53508.1 - 7.9e-06 26.1 0.1 7.9e-06 26.1 0.1 2.6 3 0 0 3 3 3 1 HD domain HD_6 PF18019.1 CQR53508.1 - 0.00012 22.3 0.0 0.0003 21.0 0.0 1.6 1 0 0 1 1 1 1 HD domain Terminase_6 PF03237.15 CQR53508.1 - 0.0095 15.6 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Terminase-like family PhoH PF02562.16 CQR53508.1 - 0.046 13.2 0.1 0.51 9.8 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein Cas_Cas5d PF09704.10 CQR53509.1 - 7.4e-42 143.7 0.0 8.9e-42 143.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_Csd1 PF09709.10 CQR53511.1 - 1.6e-136 456.3 1.7 1.9e-136 456.0 1.7 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csd1) Cas_Cas7 PF05107.12 CQR53513.1 - 5.1e-83 278.5 0.4 5.7e-83 278.3 0.4 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas4 PF01930.17 CQR53515.1 - 7e-33 114.0 1.3 8.8e-33 113.7 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 CQR53515.1 - 0.00013 22.0 1.7 0.00021 21.3 0.5 1.6 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 CQR53517.1 - 5.6e-100 334.1 0.3 6.5e-100 333.9 0.3 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 CQR53519.1 - 1.5e-26 92.4 0.5 1.8e-26 92.1 0.5 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 GyrI-like PF06445.15 CQR53520.1 - 5.3e-22 78.8 0.7 1.7e-21 77.1 0.7 1.8 1 1 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 CQR53520.1 - 1.4e-21 77.2 0.6 2.3e-21 76.5 0.6 1.4 1 0 0 1 1 1 1 Integron-associated effector binding protein HTH_18 PF12833.7 CQR53520.1 - 1.3e-19 70.2 0.3 1.9e-19 69.7 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR53520.1 - 7.5e-15 54.6 0.9 6.5e-07 29.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AAT PF03417.16 CQR53521.1 - 1.2e-36 126.6 0.0 1.6e-36 126.1 0.0 1.2 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase CBAH PF02275.18 CQR53521.1 - 5.3e-06 26.3 0.1 3.5e-05 23.6 0.1 2.3 2 1 0 2 2 2 1 Linear amide C-N hydrolases, choloylglycine hydrolase family GIY-YIG PF01541.24 CQR53521.1 - 0.02 15.2 0.0 0.043 14.1 0.0 1.6 1 0 0 1 1 1 0 GIY-YIG catalytic domain GGDEF PF00990.21 CQR53526.1 - 2.8e-38 131.2 0.1 3.7e-38 130.8 0.1 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain zf-CGNR PF11706.8 CQR53528.1 - 1.4e-17 63.2 7.1 2.2e-17 62.6 7.1 1.3 1 0 0 1 1 1 1 CGNR zinc finger ABATE PF07336.11 CQR53528.1 - 2e-15 57.6 0.0 2.7e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Putative stress-induced transcription regulator zf_CopZ PF18423.1 CQR53528.1 - 0.0028 17.6 0.9 0.0051 16.8 0.4 1.7 1 1 0 1 1 1 1 Zinc binding domain DinB_2 PF12867.7 CQR53530.1 - 1.8e-11 44.7 0.1 2.4e-11 44.3 0.1 1.1 1 0 0 1 1 1 1 DinB superfamily DinB PF05163.12 CQR53530.1 - 2.1e-06 27.8 0.0 2.6e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 DinB family DUF1572 PF07609.11 CQR53530.1 - 0.0048 16.7 0.2 0.68 9.7 0.1 2.9 2 1 1 3 3 3 1 Protein of unknown function (DUF1572) DUF664 PF04978.12 CQR53530.1 - 0.0099 16.3 0.3 0.018 15.5 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF664) SKA2 PF16740.5 CQR53536.1 - 0.0076 16.0 1.2 0.62 9.9 0.1 2.2 1 1 1 2 2 2 2 Spindle and kinetochore-associated protein 2 bZIP_1 PF00170.21 CQR53536.1 - 0.031 14.4 0.3 5.2 7.2 0.0 2.3 2 0 0 2 2 2 0 bZIP transcription factor SprT-like PF10263.9 CQR53538.1 - 4.2e-10 39.5 0.2 5.9e-10 39.0 0.2 1.2 1 0 0 1 1 1 1 SprT-like family Zn_ribbon_SprT PF17283.2 CQR53538.1 - 1.3e-08 34.6 4.6 1.3e-08 34.6 4.6 1.7 2 0 0 2 2 2 1 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 CQR53538.1 - 0.0013 18.4 0.9 0.0023 17.6 0.9 1.5 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein DUF3116 PF11313.8 CQR53538.1 - 0.025 14.4 0.4 0.075 12.9 0.1 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3116) HypA PF01155.19 CQR53538.1 - 0.14 12.2 0.3 0.27 11.3 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 CQR53538.1 - 0.17 12.0 1.8 0.47 10.6 1.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain Pentapeptide_4 PF13599.6 CQR53540.1 - 2.4e-24 85.3 23.5 1.3e-12 47.7 3.6 3.2 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 CQR53540.1 - 2.2e-18 65.5 3.2 3.1e-07 29.9 0.3 4.3 3 1 0 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 CQR53540.1 - 8.1e-11 41.9 19.8 0.00029 20.9 3.8 4.6 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) LRR_5 PF13306.6 CQR53540.1 - 0.0021 18.0 3.4 0.86 9.6 1.7 2.8 1 1 1 2 2 2 2 BspA type Leucine rich repeat region (6 copies) DUF4957 PF16318.5 CQR53540.1 - 0.014 15.3 1.9 0.07 13.1 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4957) LRR_1 PF00560.33 CQR53540.1 - 0.014 15.8 1.2 0.73 10.6 0.0 3.8 4 1 0 4 4 4 0 Leucine Rich Repeat Beta_helix PF13229.6 CQR53540.1 - 0.025 14.5 0.2 0.079 12.8 0.2 1.9 1 1 0 1 1 1 0 Right handed beta helix region HTH_AsnC-type PF13404.6 CQR53542.1 - 7.2e-13 48.1 0.1 1.1e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 CQR53542.1 - 8.7e-12 44.4 0.5 1.3e-11 43.9 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 CQR53542.1 - 6.7e-09 35.6 0.0 1.5e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 CQR53542.1 - 0.0015 18.4 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF1918 PF08940.11 CQR53542.1 - 0.038 13.6 0.6 11 5.7 0.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1918) Sigma70_r4_2 PF08281.12 CQR53542.1 - 0.055 13.2 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Lactamase_B_3 PF13483.6 CQR53544.1 - 5.2e-12 46.0 0.0 6.4e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 CQR53544.1 - 7.2e-11 42.0 0.1 9.5e-11 41.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 CQR53544.1 - 0.0097 15.9 2.2 0.038 14.0 2.2 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily BPD_transp_2 PF02653.16 CQR53547.1 - 3.3e-50 170.7 32.9 3.8e-50 170.6 32.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.6 CQR53547.1 - 3.3 7.8 11.0 94 3.1 11.0 2.8 1 1 0 1 1 1 0 Glycine zipper BPD_transp_2 PF02653.16 CQR53549.1 - 1.3e-42 145.8 39.2 1.3e-42 145.8 39.2 1.8 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 CQR53551.1 - 5.7e-31 107.8 0.0 7.3e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 CQR53551.1 - 3.2e-11 42.9 0.0 5.7e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 CQR53551.1 - 2.9e-08 33.9 2.0 0.0017 18.2 1.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR53551.1 - 0.00087 19.8 1.5 0.0011 19.5 1.5 1.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR53551.1 - 0.0045 16.6 0.1 1.2 8.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 CQR53551.1 - 0.0078 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 CQR53551.1 - 0.018 15.1 0.4 0.029 14.4 0.4 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.6 CQR53551.1 - 0.02 14.6 0.0 0.094 12.4 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR53551.1 - 0.022 14.7 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 CQR53551.1 - 0.026 14.3 0.2 0.054 13.3 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR53551.1 - 0.032 14.5 0.3 0.49 10.7 0.3 2.2 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.18 CQR53551.1 - 0.077 12.5 0.2 0.16 11.5 0.1 1.6 2 0 0 2 2 2 0 Ferrous iron transport protein B SMC_N PF02463.19 CQR53551.1 - 0.14 11.6 0.5 2.7 7.4 0.2 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRPRB PF09439.10 CQR53551.1 - 0.15 11.5 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_30 PF13604.6 CQR53551.1 - 0.16 11.7 0.0 0.62 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 CQR53553.1 - 6.1e-30 104.5 0.1 8.5e-30 104.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR53553.1 - 3.1e-12 46.9 1.5 8.8e-06 25.7 0.7 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR53553.1 - 4.3e-06 26.4 0.1 8.2e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR53553.1 - 1.5e-05 24.9 0.4 2.7e-05 24.1 0.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR53553.1 - 7.3e-05 22.7 0.9 0.00015 21.7 0.3 1.7 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 CQR53553.1 - 0.00019 20.9 0.2 0.0004 19.9 0.2 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR53553.1 - 0.00051 19.8 0.4 0.0046 16.7 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR53553.1 - 0.00064 20.3 0.2 0.00098 19.7 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR53553.1 - 0.00095 19.4 0.5 0.0064 16.8 0.3 2.2 1 1 1 2 2 2 1 AAA domain DUF2813 PF11398.8 CQR53553.1 - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_27 PF13514.6 CQR53553.1 - 0.0023 17.6 0.1 0.035 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 CQR53553.1 - 0.0024 17.3 1.0 0.0094 15.3 0.1 2.0 1 1 2 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 CQR53553.1 - 0.0027 18.1 0.2 0.0047 17.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 CQR53553.1 - 0.0077 16.3 0.5 0.019 15.0 0.3 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_13 PF13166.6 CQR53553.1 - 0.014 14.1 0.0 0.052 12.2 0.0 1.7 1 1 1 2 2 2 0 AAA domain MukB PF04310.12 CQR53553.1 - 0.02 14.7 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_33 PF13671.6 CQR53553.1 - 0.022 14.9 0.0 0.029 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR53553.1 - 0.035 14.4 0.3 0.08 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 CQR53553.1 - 0.048 13.7 0.0 0.087 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 CQR53553.1 - 0.056 13.5 0.0 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 CQR53553.1 - 0.06 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Rad17 PF03215.15 CQR53553.1 - 0.066 13.1 0.1 0.28 11.1 0.1 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 CQR53553.1 - 0.088 12.7 0.2 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 NACHT domain MCM PF00493.23 CQR53553.1 - 0.094 11.8 0.2 12 5.0 0.0 2.2 2 0 0 2 2 2 0 MCM P-loop domain AAA_7 PF12775.7 CQR53553.1 - 0.17 11.4 0.1 0.27 10.7 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 CQR53553.1 - 0.18 10.9 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 CQR53553.1 - 0.18 11.5 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Peripla_BP_6 PF13458.6 CQR53555.1 - 2.1e-65 221.6 12.3 2.5e-65 221.4 12.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 CQR53555.1 - 2.8e-33 115.5 0.1 3.9e-33 115.0 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 CQR53555.1 - 5e-28 98.1 2.4 2.5e-16 59.6 0.4 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Peripla_BP_4 PF13407.6 CQR53555.1 - 7.6e-05 22.4 9.9 0.0058 16.2 0.0 3.0 1 1 2 3 3 3 2 Periplasmic binding protein domain FAD_oxidored PF12831.7 CQR53558.1 - 7.8e-93 312.2 0.0 1e-92 311.8 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR53558.1 - 1.2e-05 25.5 0.9 5.2e-05 23.4 1.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR53558.1 - 2.9e-05 23.3 5.9 0.0031 16.6 4.5 2.4 1 1 1 2 2 2 2 FAD binding domain GIDA PF01134.22 CQR53558.1 - 0.00014 21.1 0.2 0.00025 20.3 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 CQR53558.1 - 0.0006 19.1 0.1 0.0011 18.3 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR53558.1 - 0.0011 18.3 0.9 0.15 11.3 0.4 2.4 2 0 0 2 2 2 2 Thi4 family K_oxygenase PF13434.6 CQR53558.1 - 0.0019 17.4 0.0 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 CQR53558.1 - 0.002 17.7 4.9 0.0077 15.9 4.3 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR53558.1 - 0.0024 18.4 0.5 0.15 12.6 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 CQR53558.1 - 0.023 14.0 0.8 0.023 14.0 0.8 2.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 CQR53558.1 - 0.034 13.4 0.1 0.069 12.4 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F5_F8_type_C PF00754.25 CQR53558.1 - 0.11 12.7 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 F5/8 type C domain FAD_oxidored PF12831.7 CQR53560.1 - 2.8e-29 102.7 0.0 3.1e-29 102.6 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 CQR53562.1 - 3.9e-99 332.9 0.1 4.5e-99 332.7 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 CQR53562.1 - 1.4e-08 34.2 0.7 2.7e-08 33.3 0.7 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 CQR53562.1 - 1.1e-07 31.4 3.6 1.1e-07 31.4 3.6 3.1 2 1 1 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 CQR53562.1 - 2.2e-07 31.0 0.5 2.2e-07 31.0 0.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 CQR53562.1 - 1.9e-05 24.1 8.4 2.4e-05 23.7 1.9 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR53562.1 - 2.6e-05 23.6 2.7 0.0017 17.6 1.3 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 CQR53562.1 - 2.7e-05 23.0 2.7 2.7e-05 23.0 2.7 1.8 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 CQR53562.1 - 5.5e-05 22.5 0.1 9.5e-05 21.7 0.1 1.4 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 CQR53562.1 - 6.4e-05 22.7 10.0 0.00023 20.9 5.0 2.3 1 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR53562.1 - 7.1e-05 23.3 2.0 0.048 14.2 0.8 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 CQR53562.1 - 7.1e-05 22.0 0.1 0.00012 21.3 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 CQR53562.1 - 0.013 14.3 6.2 0.23 10.2 2.3 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 CQR53562.1 - 0.071 12.3 2.7 0.12 11.7 2.7 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 CQR53562.1 - 0.17 11.1 3.5 0.14 11.4 0.4 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain BPD_transp_1 PF00528.22 CQR53564.1 - 2.6e-13 50.1 24.6 1.4e-12 47.7 24.5 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR53566.1 - 1.2e-15 57.8 11.8 1.2e-15 57.8 11.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5408 PF17402.2 CQR53566.1 - 0.24 11.3 3.5 4.1 7.4 0.4 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5408) FLILHELTA PF10306.9 CQR53566.1 - 2 8.9 5.1 8.8 6.8 0.1 3.0 3 0 0 3 3 3 0 Hypothetical protein FLILHELTA SBP_bac_1 PF01547.25 CQR53568.1 - 3.9e-26 92.8 2.2 5.5e-26 92.3 2.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR53568.1 - 5.5e-19 69.1 0.8 9e-19 68.3 0.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4720 PF15846.5 CQR53568.1 - 0.1 12.4 0.1 0.58 10.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4720) DUF4969 PF16339.5 CQR53568.1 - 0.11 12.9 0.2 0.28 11.5 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) His_kinase PF06580.13 CQR53570.1 - 2.8e-17 62.8 0.2 9.3e-17 61.1 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR53570.1 - 1.9e-10 41.2 0.0 5.3e-10 39.8 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR53570.1 - 1.3e-09 38.3 0.0 3.2e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR53570.1 - 0.00033 20.5 0.5 0.00069 19.5 0.5 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c_3 PF13589.6 CQR53570.1 - 0.0029 17.4 0.0 0.0063 16.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR53570.1 - 0.014 15.3 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain OppC_N PF12911.7 CQR53570.1 - 0.18 11.8 2.6 0.25 11.3 0.3 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Response_reg PF00072.24 CQR53573.1 - 4.4e-21 75.1 0.1 2e-19 69.8 0.1 2.5 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR53573.1 - 6.5e-20 71.2 1.1 5.7e-19 68.2 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR53573.1 - 7.6e-15 54.6 0.6 7.2e-10 38.7 0.2 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Chondroitinas_B PF14592.6 CQR53576.1 - 0.00021 20.3 0.0 0.00028 19.9 0.0 1.2 1 0 0 1 1 1 1 Chondroitinase B HTH_3 PF01381.22 CQR53580.1 - 4.2e-08 33.1 0.0 6.3e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR53580.1 - 9.5e-07 28.8 0.0 2e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 CQR53580.1 - 1.6e-05 24.9 0.0 2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_26 PF13443.6 CQR53580.1 - 0.00086 19.7 0.0 0.0016 18.8 0.0 1.5 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 CQR53580.1 - 0.069 13.5 0.0 0.099 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 CQR53582.1 - 0.027 14.5 0.0 0.13 12.3 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix CCSAP PF15748.5 CQR53582.1 - 0.18 12.0 0.0 0.21 11.8 0.0 1.0 1 0 0 1 1 1 0 Centriole, cilia and spindle-associated HTH_3 PF01381.22 CQR53584.1 - 6.6e-07 29.3 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Phage_CI_repr PF07022.13 CQR53584.1 - 3.1e-05 24.0 0.0 4e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_19 PF12844.7 CQR53584.1 - 5e-05 23.2 0.1 0.00027 20.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR53584.1 - 9.4e-05 22.8 0.1 0.00018 21.8 0.0 1.5 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain MMPL PF03176.15 CQR53586.1 - 1.5e-103 346.2 17.3 3.1e-60 203.9 7.4 2.2 2 0 0 2 2 2 2 MMPL family Glycos_transf_2 PF00535.26 CQR53588.1 - 1.8e-26 93.0 0.1 2.5e-26 92.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR53588.1 - 2.1e-09 37.3 0.1 3e-07 30.2 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 CQR53588.1 - 6.9e-09 35.9 0.0 6.4e-08 32.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 HisKA_3 PF07730.13 CQR53590.1 - 3.1e-15 56.4 10.5 3.1e-15 56.4 10.5 1.8 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR53590.1 - 7.3e-10 39.3 0.5 2e-09 37.9 0.5 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR53590.1 - 0.004 17.1 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3377 PF11857.8 CQR53590.1 - 0.008 16.1 1.9 0.008 16.1 1.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3377) HATPase_c_3 PF13589.6 CQR53590.1 - 0.048 13.5 0.3 0.11 12.3 0.2 1.6 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBP50_C PF09007.11 CQR53590.1 - 0.12 13.4 1.5 0.19 12.7 1.5 1.2 1 0 0 1 1 1 0 EBP50, C-terminal DivIVA PF05103.13 CQR53590.1 - 0.59 10.2 4.4 1 9.4 4.4 1.3 1 0 0 1 1 1 0 DivIVA protein YwiC PF14256.6 CQR53590.1 - 7.3 6.9 15.4 0.51 10.7 8.4 2.1 1 1 1 2 2 2 0 YwiC-like protein Response_reg PF00072.24 CQR53592.1 - 2.4e-32 111.4 0.3 4.2e-32 110.6 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR53592.1 - 4.1e-17 61.5 0.1 6.8e-17 60.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR53592.1 - 0.0008 19.0 0.1 0.0015 18.2 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 CQR53592.1 - 0.0024 17.6 0.2 0.01 15.6 0.2 2.1 1 1 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.6 CQR53592.1 - 0.011 15.5 0.1 0.024 14.4 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 CQR53592.1 - 0.011 15.8 0.0 0.036 14.2 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain FleQ PF06490.11 CQR53592.1 - 0.041 14.3 0.1 0.097 13.0 0.1 1.6 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ GSHPx PF00255.19 CQR53594.1 - 1.1e-39 134.3 0.1 1.5e-39 133.9 0.1 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 CQR53594.1 - 7e-07 29.2 0.0 1.2e-06 28.4 0.0 1.6 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR53594.1 - 0.00021 21.0 0.0 0.002 17.8 0.0 2.0 1 1 0 1 1 1 1 Redoxin OsmC PF02566.19 CQR53597.1 - 3.3e-20 72.4 0.0 4.6e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF393 PF04134.12 CQR53602.1 - 4.6e-32 111.7 0.0 5.5e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Cu_amine_oxidN1 PF07833.11 CQR53603.1 - 4.9e-26 91.1 0.4 4.9e-26 91.1 0.4 2.8 4 1 0 4 4 4 1 Copper amine oxidase N-terminal domain P22_AR_N PF10547.9 CQR53603.1 - 0.0062 16.9 0.0 0.16 12.3 0.0 2.5 1 1 1 2 2 2 1 P22_AR N-terminal domain DUF3804 PF12707.7 CQR53603.1 - 0.0074 16.0 0.4 0.65 9.7 0.2 3.1 3 0 0 3 3 3 1 Protein of unknown function (DUF3804) ATPgrasp_N PF18130.1 CQR53603.1 - 0.026 15.1 0.2 2.8 8.6 0.0 2.9 3 0 0 3 3 3 0 ATP-grasp N-terminal domain Cut12 PF11500.8 CQR53603.1 - 0.069 13.1 0.2 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 Spindle pole body formation-associated protein CbiA PF01656.23 CQR53605.1 - 0.0013 18.8 0.0 0.002 18.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 CQR53605.1 - 0.02 14.8 0.0 0.043 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR53605.1 - 0.046 13.3 0.1 0.24 10.9 0.2 2.1 2 1 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 CQR53605.1 - 0.048 13.1 0.1 0.17 11.3 0.1 1.8 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ DnaB_C PF03796.15 CQR53605.1 - 0.092 12.1 0.0 0.27 10.5 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Cytomega_UL20A PF05984.12 CQR53605.1 - 0.16 12.3 0.0 0.33 11.3 0.0 1.4 1 0 0 1 1 1 0 Cytomegalovirus UL20A protein T2SSE PF00437.20 CQR53607.1 - 1.1e-73 247.7 1.9 1.3e-73 247.4 1.9 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 CQR53607.1 - 9.5e-05 22.9 0.0 0.00034 21.1 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.6 CQR53607.1 - 0.00092 18.9 0.0 0.002 17.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 CQR53607.1 - 0.0011 18.4 0.0 0.0025 17.2 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_7 PF12775.7 CQR53607.1 - 0.0012 18.4 0.0 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 CQR53607.1 - 0.0012 18.3 0.0 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Pox_A32 PF04665.12 CQR53607.1 - 0.002 17.6 0.0 0.0039 16.7 0.0 1.4 1 0 0 1 1 1 1 Poxvirus A32 protein ATP_bind_1 PF03029.17 CQR53607.1 - 0.0092 15.8 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein cobW PF02492.19 CQR53607.1 - 0.0094 15.6 0.0 0.7 9.5 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 CQR53607.1 - 0.01 15.1 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 CQR53607.1 - 0.011 16.0 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR53607.1 - 0.012 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR53607.1 - 0.012 16.1 0.8 0.022 15.3 0.8 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 CQR53607.1 - 0.014 15.5 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.6 CQR53607.1 - 0.016 15.6 0.0 0.031 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain IIGP PF05049.13 CQR53607.1 - 0.026 13.6 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) Microtub_bd PF16796.5 CQR53607.1 - 0.027 14.4 0.0 0.064 13.2 0.0 1.6 2 0 0 2 2 1 0 Microtubule binding AAA_32 PF13654.6 CQR53607.1 - 0.034 12.9 0.0 0.06 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 CQR53607.1 - 0.035 13.8 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 CQR53607.1 - 0.062 13.6 0.1 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 CQR53607.1 - 0.09 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 CQR53607.1 - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.6 CQR53607.1 - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 CQR53607.1 - 0.11 11.4 0.0 0.24 10.2 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 CQR53607.1 - 0.15 12.0 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.20 CQR53607.1 - 0.25 10.5 0.0 0.32 10.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit T2SSF PF00482.23 CQR53609.1 - 1.1e-11 44.7 0.5 2e-11 43.9 0.5 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F DUF347 PF03988.12 CQR53609.1 - 0.62 10.3 4.7 0.34 11.1 1.0 2.3 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) T2SSF PF00482.23 CQR53611.1 - 8.1e-10 38.7 0.0 1.8e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F Flp1_like PF16982.5 CQR53614.1 - 1.2e-18 66.2 2.7 1.4e-18 66.0 2.7 1.1 1 0 0 1 1 1 1 Putative Flagellin, Flp1-like, domain BacA PF02673.18 CQR53614.1 - 0.045 13.5 0.2 0.045 13.5 0.2 1.0 1 0 0 1 1 1 0 Bacitracin resistance protein BacA Flp_Fap PF04964.14 CQR53614.1 - 0.14 12.0 3.6 0.75 9.7 3.6 2.1 1 1 0 1 1 1 0 Flp/Fap pilin component Class_IIIsignal PF04021.12 CQR53614.1 - 1.2 9.2 6.6 1.9 8.6 6.6 1.3 1 0 0 1 1 1 0 Class III signal peptide TadE PF07811.12 CQR53616.1 - 0.00044 20.5 0.2 0.00084 19.6 0.2 1.5 1 0 0 1 1 1 1 TadE-like protein Type_III_YscX PF09474.10 CQR53616.1 - 0.11 12.8 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Type III secretion system YscX (type_III_YscX) DUF4088 PF13317.6 CQR53618.1 - 0.013 15.1 0.0 0.045 13.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) DUF2052 PF09747.9 CQR53618.1 - 0.1 12.7 2.2 0.22 11.6 2.2 1.6 1 0 0 1 1 1 0 Coiled-coil domain containing protein (DUF2052) SMP_2 PF10144.9 CQR53618.1 - 0.25 11.0 4.2 0.54 9.9 1.1 2.8 3 0 0 3 3 3 0 Bacterial virulence factor haemolysin TadE PF07811.12 CQR53620.1 - 1.2e-06 28.7 2.2 2.2e-06 27.8 2.2 1.5 1 0 0 1 1 1 1 TadE-like protein MG2 PF01835.19 CQR53620.1 - 0.024 15.1 0.0 0.049 14.1 0.0 1.5 1 0 0 1 1 1 0 MG2 domain DUF3859 PF12975.7 CQR53620.1 - 0.04 13.9 0.2 0.067 13.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) Peptidase_A24 PF01478.18 CQR53623.1 - 1.2e-17 64.2 13.9 2e-17 63.5 13.9 1.3 1 0 0 1 1 1 1 Type IV leader peptidase family FHA PF00498.26 CQR53624.1 - 1e-11 45.0 0.0 6.8e-11 42.4 0.0 2.1 2 0 0 2 2 2 1 FHA domain Yop-YscD_cpl PF16697.5 CQR53624.1 - 5.3e-06 26.7 0.0 1.7e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain DUF1731 PF08338.11 CQR53626.1 - 7.2e-20 70.6 0.3 1.5e-19 69.5 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) Epimerase PF01370.21 CQR53626.1 - 6e-13 48.8 0.0 1.8e-12 47.3 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR53626.1 - 1.4e-05 24.7 0.1 0.00065 19.2 0.1 2.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase KR PF08659.10 CQR53626.1 - 0.0028 17.6 0.1 0.0081 16.1 0.0 1.6 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.6 CQR53626.1 - 0.0035 17.3 0.0 0.0044 16.9 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 CQR53626.1 - 0.011 16.3 0.0 0.05 14.2 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 CQR53626.1 - 0.17 12.1 0.2 0.52 10.6 0.0 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 CQR53626.1 - 0.22 11.0 0.0 0.78 9.2 0.0 1.8 2 0 0 2 2 2 0 short chain dehydrogenase DUF2621 PF11084.8 CQR53629.1 - 1.5e-64 216.2 0.0 1.7e-64 216.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2621) DUF2300 PF10062.9 CQR53629.1 - 0.011 15.8 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) AP_endonuc_2 PF01261.24 CQR53631.1 - 7.2e-38 130.1 0.2 1.5e-37 129.1 0.1 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Formyl_trans_N PF00551.19 CQR53633.1 - 4.1e-39 134.2 0.1 5.2e-39 133.8 0.1 1.1 1 0 0 1 1 1 1 Formyl transferase ACT PF01842.25 CQR53633.1 - 4.5e-09 35.9 0.0 9.7e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 CQR53633.1 - 0.0046 16.9 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 ACT domain DUF1455 PF07306.11 CQR53635.1 - 2.4 8.1 10.9 2.8 7.9 9.0 2.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1455) T2SSE PF00437.20 CQR53638.1 - 2.8e-12 46.3 0.0 4.7e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 CQR53638.1 - 0.013 15.9 0.0 0.06 13.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 CQR53638.1 - 0.025 14.0 0.1 0.048 13.0 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Dynamin_N PF00350.23 CQR53638.1 - 0.036 14.1 0.3 0.073 13.1 0.3 1.4 1 0 0 1 1 1 0 Dynamin family AAA PF00004.29 CQR53638.1 - 0.087 13.3 0.0 1.8 9.0 0.0 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 CQR53638.1 - 0.12 13.0 0.7 0.44 11.1 0.1 2.2 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 CQR53638.1 - 0.16 11.5 0.2 0.33 10.5 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain LANC_like PF05147.13 CQR53640.1 - 0.02 13.5 0.0 0.029 12.9 0.0 1.2 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein DUF3810 PF12725.7 CQR53642.1 - 0.076 12.3 3.3 0.028 13.8 0.5 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3810) EIIC-GAT PF03611.14 CQR53644.1 - 0.0093 15.1 0.1 0.0093 15.1 0.1 1.0 1 0 0 1 1 1 1 PTS system sugar-specific permease component PMP1_2 PF08114.11 CQR53644.1 - 0.5 10.1 4.3 1 9.2 4.3 1.4 1 0 0 1 1 1 0 ATPase proteolipid family OapA_N PF08525.11 CQR53644.1 - 4.6 7.3 6.1 6.5 6.8 6.1 1.2 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif YqhR PF11085.8 CQR53646.1 - 0.054 13.4 0.4 0.079 12.9 0.4 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR XH PF03469.14 CQR53650.1 - 0.0039 17.1 0.3 0.0056 16.6 0.3 1.2 1 0 0 1 1 1 1 XH domain Myb_DNA-bind_5 PF13873.6 CQR53650.1 - 0.02 14.9 0.3 0.038 14.1 0.3 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain Y_Y_Y PF07495.13 CQR53653.1 - 0.00096 19.1 3.0 2.6 8.0 0.0 5.2 6 0 0 6 6 6 2 Y_Y_Y domain DUF4625 PF15418.6 CQR53653.1 - 0.015 15.6 0.9 0.33 11.2 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4625) fn3 PF00041.21 CQR53653.1 - 0.061 13.7 1.0 3.6 8.0 0.2 3.1 2 0 0 2 2 2 0 Fibronectin type III domain Peptidase_C92 PF05708.12 CQR53654.1 - 0.00038 20.6 0.3 0.002 18.3 0.3 1.9 1 1 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Transketolase_N PF00456.21 CQR53656.1 - 4.4e-149 496.0 0.1 5.9e-149 495.6 0.1 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 CQR53656.1 - 1.9e-45 154.7 1.5 3.6e-45 153.8 0.0 2.1 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 CQR53656.1 - 5.3e-12 45.7 0.1 1.9e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 CQR53656.1 - 1.2e-05 25.1 1.5 0.001 18.9 1.5 2.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 CQR53656.1 - 0.00011 21.5 0.1 0.0046 16.2 0.2 2.3 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 CQR53656.1 - 0.00013 21.0 0.1 0.00026 20.0 0.1 1.4 1 0 0 1 1 1 1 Dehydrogenase E1 component DUF3343 PF11823.8 CQR53656.1 - 0.098 12.1 0.0 0.43 10.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3343) Ppnp PF06865.11 CQR53659.1 - 3.8e-35 120.2 0.0 4.4e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Pyrimidine/purine nucleoside phosphorylase EutQ PF06249.12 CQR53659.1 - 0.027 14.2 0.0 0.033 14.0 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Peptidase_M14 PF00246.24 CQR53661.1 - 2.8e-42 145.5 2.8 1.3e-41 143.3 2.6 2.0 1 1 0 1 1 1 1 Zinc carboxypeptidase SH3_4 PF06347.13 CQR53661.1 - 0.00086 19.1 0.1 0.0027 17.5 0.1 1.8 1 0 0 1 1 1 1 Bacterial SH3 domain SH3_3 PF08239.11 CQR53661.1 - 0.0034 17.6 1.7 0.019 15.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial SH3 domain DUF2761 PF10959.8 CQR53661.1 - 0.0067 16.4 0.0 0.021 14.8 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2761) Abhydrolase_1 PF00561.20 CQR53663.1 - 4e-17 62.7 0.0 5.7e-15 55.7 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR53663.1 - 8.6e-12 46.1 0.0 1e-11 45.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR53663.1 - 1.8e-11 43.8 0.0 3.7e-11 42.8 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 CQR53663.1 - 0.00042 19.8 0.0 0.01 15.3 0.0 2.4 3 0 0 3 3 3 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 CQR53663.1 - 0.0041 17.0 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Palm_thioest PF02089.15 CQR53663.1 - 0.027 14.3 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase UPF0227 PF05728.12 CQR53663.1 - 0.044 13.7 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) DUF2920 PF11144.8 CQR53663.1 - 0.13 11.4 0.0 0.2 10.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2920) Abhydrolase_5 PF12695.7 CQR53663.1 - 0.17 11.7 0.0 14 5.5 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 CQR53663.1 - 0.18 12.0 0.0 0.36 11.0 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Acetyltransf_10 PF13673.7 CQR53665.1 - 2.5e-10 40.3 0.0 3.1e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR53665.1 - 4.9e-08 33.2 0.0 6e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR53665.1 - 2.5e-07 31.0 0.0 3.9e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53665.1 - 0.15 12.1 0.0 0.87 9.6 0.0 2.1 1 1 0 1 1 1 0 FR47-like protein NAD_binding_2 PF03446.15 CQR53667.1 - 8.6e-47 159.2 0.6 1.4e-46 158.6 0.6 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 CQR53667.1 - 4.5e-31 107.6 0.7 6.9e-31 107.0 0.7 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 CQR53667.1 - 1.6e-08 35.0 0.0 3.7e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 CQR53667.1 - 1.1e-05 25.5 0.0 1.8e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 CQR53667.1 - 2.3e-05 24.1 0.0 4.9e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 CQR53667.1 - 8.8e-05 21.9 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 CQR53667.1 - 9.8e-05 22.3 0.0 0.00019 21.4 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 CQR53667.1 - 0.00015 21.5 0.0 0.00026 20.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 CQR53667.1 - 0.0024 18.1 0.0 0.039 14.2 0.0 2.4 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 CQR53667.1 - 0.0046 16.6 0.0 2.1 7.9 0.0 2.3 1 1 1 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 CQR53667.1 - 0.12 12.8 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding PGI PF00342.19 CQR53669.1 - 1.5e-25 89.8 0.0 6.5e-25 87.7 0.0 1.7 1 1 0 1 1 1 1 Phosphoglucose isomerase TPP_enzyme_M PF00205.22 CQR53669.1 - 0.055 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain UPF0029 PF01205.19 CQR53672.1 - 7.7e-35 119.4 0.0 1.2e-34 118.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 CQR53672.1 - 6.6e-15 54.7 0.0 1.3e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) TetR_N PF00440.23 CQR53674.1 - 1.3e-15 56.8 1.0 2.7e-15 55.9 1.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_33 PF13305.6 CQR53674.1 - 1.2e-06 29.1 0.0 2.2e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain UPF0047 PF01894.17 CQR53676.1 - 4.8e-41 139.5 0.0 5.5e-41 139.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 BPD_transp_1 PF00528.22 CQR53678.1 - 4.3e-19 69.0 17.7 4.3e-19 69.0 17.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR53680.1 - 1.4e-15 57.5 16.3 1.4e-15 57.5 16.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR53683.1 - 1.8e-34 119.2 0.0 3.6e-34 118.2 0.0 1.5 2 0 0 2 2 1 1 ABC transporter TOBE_2 PF08402.10 CQR53683.1 - 4.3e-08 33.2 0.1 6.8e-07 29.4 0.0 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 CQR53683.1 - 5.5e-08 33.0 0.2 0.0055 16.5 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53683.1 - 5.6e-05 22.7 0.0 0.00014 21.4 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 CQR53683.1 - 0.011 16.0 0.1 0.071 13.4 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 CQR53683.1 - 0.063 13.8 0.8 0.12 12.8 0.8 1.5 1 1 0 1 1 1 0 AAA domain TOBE PF03459.17 CQR53683.1 - 0.069 13.4 0.1 0.15 12.4 0.1 1.4 1 0 0 1 1 1 0 TOBE domain AAA_22 PF13401.6 CQR53683.1 - 0.12 12.6 0.1 0.36 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR53683.1 - 0.14 12.1 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 CQR53683.1 - 0.14 12.6 0.2 1.5 9.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR53683.1 - 0.15 12.5 0.3 0.32 11.3 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 CQR53683.1 - 0.16 11.3 0.0 0.74 9.1 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 CQR53683.1 - 0.17 11.2 0.7 3.8 6.8 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 CQR53683.1 - 0.17 12.1 0.0 1 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain SBP_bac_11 PF13531.6 CQR53685.1 - 1.8e-42 145.7 3.9 2.2e-42 145.4 3.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR53685.1 - 2.8e-11 43.9 5.3 2.8e-11 43.9 5.3 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR53685.1 - 4.1e-11 43.2 3.1 2.6e-09 37.3 0.2 2.1 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR53685.1 - 1.5e-10 40.9 0.1 2.3e-10 40.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SPOUT_MTase_2 PF14419.6 CQR53685.1 - 0.14 11.5 0.0 0.39 10.1 0.0 1.7 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP LPAM_2 PF13627.6 CQR53685.1 - 1.7 8.6 4.1 3.3 7.7 4.1 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Lactamase_B_2 PF12706.7 CQR53687.1 - 3.6e-21 75.6 0.0 4.6e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 CQR53687.1 - 2.8e-12 47.0 0.1 4.6e-12 46.3 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 CQR53687.1 - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 CQR53689.1 - 9.9e-59 198.7 1.6 1.4e-58 198.3 1.6 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR53689.1 - 5e-52 176.2 1.5 6.6e-52 175.8 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR53689.1 - 0.00021 21.3 3.9 0.0015 18.5 3.9 2.0 1 1 0 1 1 1 1 KR domain LuxS PF02664.15 CQR53691.1 - 8.5e-56 187.9 0.0 1e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 S-Ribosylhomocysteinase (LuxS) Lipoprotein_9 PF03180.14 CQR53693.1 - 3.4e-69 232.5 1.1 3.9e-69 232.4 1.1 1.0 1 0 0 1 1 1 1 NLPA lipoprotein LPAM_2 PF13627.6 CQR53693.1 - 0.71 9.8 1.7 1.1 9.2 1.7 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Aminotran_1_2 PF00155.21 CQR53695.1 - 6.7e-64 216.3 0.0 7.7e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 CQR53695.1 - 0.00057 18.9 0.1 0.022 13.6 0.0 2.4 2 1 0 2 2 2 2 Allinase ABC_tran PF00005.27 CQR53698.1 - 7e-35 120.5 0.0 1.3e-34 119.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter NIL PF09383.10 CQR53698.1 - 4.8e-19 68.0 0.1 1.3e-18 66.6 0.1 1.8 1 0 0 1 1 1 1 NIL domain AAA_21 PF13304.6 CQR53698.1 - 4.8e-07 29.9 0.6 8.6e-05 22.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53698.1 - 2.4e-06 27.2 1.2 8.8e-06 25.3 1.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR53698.1 - 6.4e-05 23.2 0.1 0.00047 20.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF99 PF01949.16 CQR53698.1 - 0.00089 18.7 0.0 0.72 9.2 0.0 2.8 1 1 2 3 3 3 2 Protein of unknown function DUF99 AAA_16 PF13191.6 CQR53698.1 - 0.0042 17.5 0.1 0.0096 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR53698.1 - 0.0057 16.6 0.7 0.042 13.8 0.0 2.4 2 1 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 CQR53698.1 - 0.014 15.1 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 CQR53698.1 - 0.033 14.4 0.2 0.25 11.6 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 CQR53698.1 - 0.051 13.7 0.4 0.24 11.5 0.1 2.2 2 1 1 3 3 3 0 50S ribosome-binding GTPase AAA_18 PF13238.6 CQR53698.1 - 0.06 13.9 0.3 0.67 10.5 0.0 2.5 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 CQR53698.1 - 0.089 12.5 0.1 0.65 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR53698.1 - 0.13 12.5 0.0 0.24 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 CQR53700.1 - 2.9e-19 69.5 18.3 3.7e-19 69.2 18.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2433 PF10360.9 CQR53700.1 - 0.0037 17.4 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2433) Fe-ADH PF00465.19 CQR53702.1 - 3.8e-54 183.9 0.2 4.5e-54 183.7 0.2 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 CQR53702.1 - 9.8e-23 81.1 0.0 1.3e-22 80.7 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 CQR53702.1 - 0.0025 17.0 0.3 0.28 10.3 0.0 2.3 2 0 0 2 2 2 2 3-dehydroquinate synthase AIRC PF00731.20 CQR53702.1 - 0.0085 15.7 0.1 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 AIR carboxylase PNP_UDP_1 PF01048.20 CQR53704.1 - 4e-52 176.8 2.5 4.4e-52 176.7 2.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Acetyltransf_3 PF13302.7 CQR53706.1 - 1.2e-20 74.6 0.1 1.5e-20 74.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR53706.1 - 1.1e-06 28.9 0.0 1.5e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR53706.1 - 0.03 14.0 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF5071 PF16804.5 CQR53708.1 - 7.2e-24 84.3 1.9 1.2e-23 83.7 1.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5071) Methyltransf_11 PF08241.12 CQR53710.1 - 1.6e-10 41.5 0.0 2.7e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR53710.1 - 1.4e-08 35.4 0.0 3.9e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR53710.1 - 9.4e-08 32.7 0.0 9.8e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.20 CQR53710.1 - 3e-07 29.8 0.0 4.8e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 CQR53710.1 - 1.1e-05 25.3 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 CQR53710.1 - 0.053 12.8 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 CQR53710.1 - 0.08 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF1806 PF08830.10 CQR53712.1 - 2.7e-45 152.8 0.0 3e-45 152.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1806) PIG-L PF02585.17 CQR53714.1 - 2.6e-28 99.3 0.0 3.8e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Hydrolase_3 PF08282.12 CQR53717.1 - 8.9e-69 232.0 0.1 1e-68 231.9 0.1 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR53717.1 - 3.2e-19 69.4 0.0 9.7e-11 41.7 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 CQR53717.1 - 1e-07 32.5 3.1 0.014 15.7 0.0 3.2 2 2 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 CQR53717.1 - 0.0011 19.1 0.1 0.29 11.2 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR53717.1 - 0.011 16.2 3.6 0.57 10.6 0.0 3.0 1 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase EamA PF00892.20 CQR53719.1 - 1.4e-29 103.0 38.7 6.3e-17 62.0 21.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family YdjM PF04307.14 CQR53721.1 - 2.7e-22 78.9 13.9 2.7e-21 75.7 13.9 2.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3959 PF13105.6 CQR53721.1 - 3.3 7.1 6.2 0.31 10.5 0.7 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3959) DUF1717 PF05414.11 CQR53723.1 - 0.095 13.2 2.1 13 6.3 0.9 3.5 1 1 1 2 2 2 0 Viral domain of unknown function (DUF1717) Peptidase_C97 PF05903.14 CQR53723.1 - 0.16 11.8 0.8 3.1 7.6 0.8 2.7 1 1 0 1 1 1 0 PPPDE putative peptidase domain Lip_prot_lig_C PF10437.9 CQR53725.1 - 3.5e-28 97.4 0.0 1e-27 95.9 0.0 1.9 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 CQR53725.1 - 6.3e-11 42.3 0.0 1.3e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Aminotran_1_2 PF00155.21 CQR53727.1 - 1.9e-31 109.5 0.0 2.3e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CbiZ PF01955.18 CQR53729.1 - 1.3e-53 182.0 3.7 1.6e-53 181.7 3.7 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CobD_Cbib PF03186.13 CQR53732.1 - 3.8e-102 341.2 2.5 4.9e-102 340.9 2.5 1.1 1 0 0 1 1 1 1 CobD/Cbib protein His_Phos_1 PF00300.22 CQR53734.1 - 3.9e-38 131.1 0.1 5.8e-38 130.5 0.1 1.3 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Aminotran_1_2 PF00155.21 CQR53736.1 - 8.3e-26 91.0 0.0 1.1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 CQR53736.1 - 6.1e-12 45.0 0.0 3.3e-11 42.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 CQR53736.1 - 2.3e-10 39.8 0.0 3.7e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase HTH_36 PF13730.6 CQR53736.1 - 0.022 14.7 0.0 0.087 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 CQR53736.1 - 0.089 13.1 0.1 0.23 11.8 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 CQR53736.1 - 0.11 12.7 0.0 1.9 8.7 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF5627 PF18620.1 CQR53736.1 - 0.18 11.7 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5627) Dala_Dala_lig_C PF07478.13 CQR53737.1 - 4.5e-49 166.8 0.0 5.8e-49 166.4 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 CQR53737.1 - 4.3e-18 65.7 0.5 5.2e-17 62.2 0.5 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase N-terminus ATP-grasp_3 PF02655.14 CQR53737.1 - 1.9e-12 47.5 0.0 2.1e-11 44.1 0.0 2.2 2 1 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 CQR53737.1 - 4.8e-07 29.6 0.0 7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 CQR53737.1 - 7e-07 28.9 0.0 2.3e-05 24.0 0.0 2.6 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 CQR53737.1 - 7.6e-06 25.6 0.0 2.1e-05 24.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.6 CQR53737.1 - 2.3e-05 24.0 0.1 0.00033 20.3 0.2 2.5 2 1 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 CQR53737.1 - 0.0003 20.6 0.0 0.0033 17.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 CQR53737.1 - 0.00079 18.8 0.0 0.091 12.0 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Aminotran_1_2 PF00155.21 CQR53740.1 - 1.3e-73 248.2 0.0 1.5e-73 248.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR53740.1 - 8.6e-10 38.5 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 CQR53740.1 - 1.8e-08 33.8 0.0 2.1e-07 30.3 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 CQR53740.1 - 5.6e-05 22.6 0.0 0.00041 19.7 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 CQR53740.1 - 0.00034 19.3 0.0 0.00052 18.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DBI_PRT PF02277.17 CQR53742.1 - 1.2e-138 461.9 13.0 1.3e-138 461.7 13.0 1.0 1 0 0 1 1 1 1 Phosphoribosyltransferase AAA_23 PF13476.6 CQR53742.1 - 0.17 12.4 0.0 0.24 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain CobU PF02283.16 CQR53744.1 - 4.2e-58 195.7 0.0 4.7e-58 195.5 0.0 1.0 1 0 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_16 PF13191.6 CQR53744.1 - 0.0068 16.8 0.5 0.0095 16.3 0.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain SAVED PF18145.1 CQR53744.1 - 0.22 11.3 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 SMODS-associated and fused to various effectors sensor domain CobS PF02654.15 CQR53747.1 - 6.4e-56 189.8 15.8 7.5e-56 189.6 15.8 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase GATase_3 PF07685.14 CQR53749.1 - 5.5e-52 176.2 0.0 7.7e-52 175.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 CQR53749.1 - 1.2e-19 70.9 0.0 6.4e-19 68.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 CQR53749.1 - 1.5e-19 70.3 0.0 2.3e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 CQR53749.1 - 0.026 13.8 0.0 0.16 11.3 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain UPF0060 PF02694.15 CQR53751.1 - 5.4e-46 155.2 11.4 5.9e-46 155.1 11.4 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family EamA PF00892.20 CQR53751.1 - 0.00017 21.7 8.1 0.0006 20.0 8.1 1.9 1 1 0 1 1 1 1 EamA-like transporter family MFS_1 PF07690.16 CQR53751.1 - 0.026 13.4 0.9 0.026 13.4 0.9 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily CcmD PF04995.14 CQR53751.1 - 0.081 13.0 1.5 0.081 13.0 1.5 3.1 5 0 0 5 5 5 0 Heme exporter protein D (CcmD) Multi_Drug_Res PF00893.19 CQR53751.1 - 0.17 12.6 4.5 0.18 12.5 3.9 1.4 1 1 0 1 1 1 0 Small Multidrug Resistance protein DUF998 PF06197.13 CQR53751.1 - 9.5 5.8 17.0 0.74 9.4 4.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF998) CBM_21 PF03370.13 CQR53753.1 - 1.4e-34 118.7 14.5 3.3e-18 65.9 5.4 2.1 2 0 0 2 2 2 2 Carbohydrate/starch-binding module (family 21) CBM53 PF16760.5 CQR53753.1 - 2e-16 60.3 19.4 1.1e-09 38.7 5.8 2.5 2 1 0 2 2 2 2 Starch/carbohydrate-binding module (family 53) DUF943 PF06092.12 CQR53753.1 - 0.024 14.3 0.3 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Enterobacterial putative membrane protein (DUF943) DUF4357 PF14267.6 CQR53753.1 - 0.038 13.9 1.8 3.6 7.6 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4357) DUF423 PF04241.15 CQR53753.1 - 0.078 13.2 0.2 2.5 8.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF423) CBM_25 PF03423.13 CQR53753.1 - 0.51 10.6 18.5 3.9 7.8 6.5 3.4 2 2 0 2 2 2 0 Carbohydrate binding domain (family 25) DDE_Tnp_1 PF01609.21 CQR53755.1 - 2.6e-09 37.0 0.0 3e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain MCPsignal PF00015.21 CQR53757.1 - 2.8e-42 144.5 39.4 6e-40 136.9 22.9 3.0 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR53757.1 - 3.6e-19 68.9 0.2 1.3e-15 57.4 0.0 3.5 3 0 0 3 3 3 2 HAMP domain FKBP_N_2 PF18023.1 CQR53757.1 - 0.057 13.5 3.5 0.31 11.2 0.8 2.9 2 0 0 2 2 2 0 BDBT FKBP like N-terminal YqjK PF13997.6 CQR53757.1 - 0.53 10.6 2.3 2.4 8.5 2.3 2.2 1 0 0 1 1 1 0 YqjK-like protein ASL_C PF08328.11 CQR53757.1 - 0.56 10.3 7.0 0.2 11.8 1.5 2.9 2 1 0 2 2 2 0 Adenylosuccinate lyase C-terminal ER-remodelling PF14755.6 CQR53757.1 - 1.3 9.3 3.4 0.93 9.8 1.3 1.8 2 0 0 2 2 2 0 Intracellular membrane remodeller BLOC1_2 PF10046.9 CQR53757.1 - 1.4 9.3 25.0 3.2 8.1 0.4 5.6 4 2 3 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vut_1 PF02592.15 CQR53759.1 - 7.2e-47 159.5 8.5 7.2e-47 159.5 8.5 1.6 2 0 0 2 2 2 1 Putative vitamin uptake transporter Peptidase_M24 PF00557.24 CQR53761.1 - 1.8e-60 204.2 0.2 2.4e-60 203.8 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 CQR53761.1 - 4.9e-25 88.7 0.0 7.9e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain GSDH PF07995.11 CQR53764.1 - 1.2e-90 304.2 0.0 1.6e-90 303.8 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Tachylectin PF14517.6 CQR53764.1 - 0.072 12.6 0.0 1.4 8.4 0.0 2.8 3 0 0 3 3 3 0 Tachylectin SLH PF00395.20 CQR53766.1 - 9.6e-30 102.3 7.0 2.9e-09 36.8 0.0 3.7 3 0 0 3 3 3 3 S-layer homology domain adh_short PF00106.25 CQR53767.1 - 1.9e-36 125.3 1.2 1.1e-35 122.8 1.2 1.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR53767.1 - 8.4e-27 94.2 0.1 2.5e-26 92.7 0.1 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR53767.1 - 3.2e-09 37.0 0.2 4.5e-09 36.5 0.2 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR53767.1 - 1.6e-05 24.5 0.1 2.4e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.8 CQR53767.1 - 0.012 15.4 0.5 0.024 14.4 0.5 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Acetyltransf_1 PF00583.25 CQR53769.1 - 2.5e-15 56.7 0.0 3.1e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 CQR53769.1 - 2.2e-12 47.4 0.0 2.5e-12 47.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR53769.1 - 2.9e-08 34.5 0.0 3.4e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53769.1 - 3.2e-06 27.5 0.0 5e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 CQR53769.1 - 0.00025 20.7 0.0 0.00035 20.2 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_10 PF13673.7 CQR53769.1 - 0.00059 19.8 0.0 0.00097 19.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53769.1 - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 CQR53769.1 - 0.02 15.0 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR53769.1 - 0.055 13.6 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HxlR PF01638.17 CQR53772.1 - 7.2e-30 102.7 0.2 8.5e-30 102.5 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 CQR53772.1 - 0.0022 17.8 0.2 0.0046 16.8 0.1 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.14 CQR53772.1 - 0.0078 16.1 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR53772.1 - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 CQR53772.1 - 0.06 13.3 0.0 0.078 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3886 PF13025.6 CQR53774.1 - 4.3e-22 78.1 12.0 5.6e-22 77.7 12.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3886) UPF0172 PF03665.13 CQR53774.1 - 0.016 15.2 1.1 0.016 15.2 1.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0172) LPP PF04728.13 CQR53774.1 - 0.092 13.1 3.6 0.14 12.5 3.6 1.3 1 0 0 1 1 1 0 Lipoprotein leucine-zipper KfrA_N PF11740.8 CQR53774.1 - 0.11 13.2 6.7 0.13 12.9 6.7 1.1 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term RtcB PF01139.17 CQR53776.1 - 5e-102 342.2 0.0 5.8e-102 341.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB AAA PF00004.29 CQR53778.1 - 1.4e-21 77.3 0.0 3.2e-21 76.1 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR53778.1 - 4e-06 26.9 0.0 1.9e-05 24.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR53778.1 - 1.3e-05 25.7 0.1 0.0049 17.3 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 CQR53778.1 - 0.0021 18.3 0.1 0.12 12.6 0.1 2.5 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.22 CQR53778.1 - 0.0079 16.6 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 RNA helicase ABC_tran PF00005.27 CQR53778.1 - 0.019 15.5 0.0 0.04 14.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Mg_chelatase PF01078.21 CQR53778.1 - 0.038 13.4 0.0 0.061 12.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 CQR53778.1 - 0.049 13.6 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 CQR53778.1 - 0.055 13.2 0.0 0.095 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR53778.1 - 0.055 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 CQR53778.1 - 0.077 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 CQR53778.1 - 0.095 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 CQR53778.1 - 0.12 12.1 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 CQR53778.1 - 0.13 12.4 0.0 0.36 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR53778.1 - 0.17 11.5 0.0 0.39 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 CQR53778.1 - 0.21 11.7 0.0 0.37 10.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.15 CQR53778.1 - 0.28 11.1 0.8 0.96 9.3 0.1 2.1 2 0 0 2 2 2 0 NTPase Sigma70_r2 PF04542.14 CQR53781.1 - 2.5e-13 49.6 1.9 3e-13 49.3 1.9 1.1 1 0 0 1 1 1 1 Sigma-70 region 2 Metallophos_2 PF12850.7 CQR53783.1 - 5.5e-32 111.2 0.0 6.2e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 CQR53783.1 - 2.1e-07 31.6 0.2 0.0055 17.2 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Acetyltransf_1 PF00583.25 CQR53785.1 - 4.9e-14 52.6 0.0 7.6e-14 52.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR53785.1 - 6.7e-09 36.1 0.0 9.5e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR53785.1 - 1e-08 35.1 0.0 1.5e-08 34.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR53785.1 - 7.1e-05 23.5 0.0 9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53785.1 - 0.00052 19.9 0.0 0.0012 18.7 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein PanZ PF12568.8 CQR53785.1 - 0.00066 19.4 0.1 0.0087 15.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 CQR53785.1 - 0.0019 18.4 0.0 0.0023 18.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR53785.1 - 0.0021 18.1 0.0 0.0036 17.4 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase HAD_2 PF13419.6 CQR53787.1 - 5e-20 72.3 0.0 7.4e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR53787.1 - 4.4e-08 33.7 0.1 1.3e-07 32.1 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR53787.1 - 4.6e-08 33.0 0.0 1.2e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR53787.1 - 5e-05 23.8 0.1 7.9e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 CQR53787.1 - 0.0024 17.9 0.0 0.027 14.6 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase CO_deh_flav_C PF03450.17 CQR53787.1 - 0.022 14.9 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain ApbE PF02424.15 CQR53789.1 - 7.1e-85 284.6 0.0 8.5e-85 284.4 0.0 1.1 1 0 0 1 1 1 1 ApbE family DUF4969 PF16339.5 CQR53789.1 - 0.013 15.8 0.0 0.03 14.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) ETRAMP PF09716.10 CQR53789.1 - 0.091 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) PepSY_2 PF13670.6 CQR53789.1 - 0.14 12.2 2.0 14 5.8 1.0 3.4 4 0 0 4 4 4 0 Peptidase propeptide and YPEB domain TetR_N PF00440.23 CQR53791.1 - 5.4e-16 58.1 0.1 9.5e-16 57.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 CQR53791.1 - 4.8e-06 26.8 0.0 8.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF2489 PF10675.9 CQR53791.1 - 0.00034 20.5 0.1 0.00077 19.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2489) Dynein_AAA_lid PF17852.1 CQR53791.1 - 0.018 15.1 0.5 0.57 10.3 0.1 2.3 1 1 1 2 2 2 0 Dynein heavy chain AAA lid domain YfcL PF08891.11 CQR53791.1 - 0.047 14.0 0.3 10 6.6 0.1 2.7 3 0 0 3 3 3 0 YfcL protein TetR_C_11 PF16859.5 CQR53791.1 - 0.12 12.7 0.1 0.28 11.5 0.0 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain ABC2_membrane_3 PF12698.7 CQR53793.1 - 2.2e-28 99.4 18.5 5.1e-18 65.3 10.1 2.4 2 1 0 2 2 2 2 ABC-2 family transporter protein DUF3533 PF12051.8 CQR53793.1 - 1.7e-09 37.1 13.0 2.1e-08 33.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3533) ABC2_membrane PF01061.24 CQR53793.1 - 8.6e-07 28.6 16.1 8.6e-07 28.6 16.1 2.1 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR53793.1 - 0.45 9.8 13.5 1.6 7.9 13.5 1.9 1 0 0 1 1 1 0 ABC-2 family transporter protein Glycos_transf_2 PF00535.26 CQR53797.1 - 1.7e-14 54.0 0.0 2.7e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR53797.1 - 9.9e-13 48.5 0.0 1.4e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 CQR53797.1 - 0.00014 21.8 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.20 CQR53799.1 - 9.9e-39 132.6 0.0 2.8e-38 131.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR53799.1 - 9.9e-29 100.5 0.0 1.9e-28 99.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR53799.1 - 5.2e-09 36.4 0.0 1.9e-08 34.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR53799.1 - 2.3e-07 31.0 0.1 4.3e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR53799.1 - 0.0023 18.4 0.0 0.004 17.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Ferredoxin_N PF16947.5 CQR53799.1 - 0.14 12.3 0.1 35 4.6 0.0 3.1 3 0 0 3 3 3 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding DSBA PF01323.20 CQR53800.1 - 4.3e-46 157.1 0.2 5.5e-46 156.8 0.2 1.1 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 CQR53800.1 - 7e-08 32.8 0.3 2.9e-06 27.5 0.3 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_5 PF13743.6 CQR53800.1 - 2.5e-05 24.0 0.2 4.3e-05 23.3 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 CQR53800.1 - 0.0011 19.0 0.0 0.029 14.4 0.0 2.5 3 0 0 3 3 3 1 Thioredoxin domain Thioredoxin_2 PF13098.6 CQR53800.1 - 0.035 14.5 0.0 3.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin-like domain MCRA PF06100.11 CQR53803.1 - 3.7e-217 722.0 0.0 4.2e-217 721.8 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 CQR53803.1 - 6e-05 23.2 0.0 0.00051 20.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 CQR53803.1 - 0.00015 21.5 0.1 0.0023 17.6 0.1 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 CQR53803.1 - 0.078 12.2 0.8 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 Thi4 family TetR_C_8 PF14278.6 CQR53804.1 - 8.8e-34 115.7 0.0 2.1e-33 114.5 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR53804.1 - 0.0012 18.6 0.0 0.0022 17.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Tom22 PF04281.13 CQR53806.1 - 0.11 12.2 0.2 0.14 11.9 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 Bax1-I PF01027.20 CQR53806.1 - 0.26 11.1 10.4 0.32 10.8 10.4 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 PseudoU_synth_2 PF00849.22 CQR53810.1 - 1.4e-28 100.0 0.3 2e-28 99.5 0.3 1.3 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4_2 PF13275.6 CQR53810.1 - 1.1e-05 25.2 0.0 3.5e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 S4 domain S4 PF01479.25 CQR53810.1 - 0.0016 18.1 0.0 0.0036 17.0 0.0 1.6 1 0 0 1 1 1 1 S4 domain DUF5124 PF17160.4 CQR53810.1 - 0.086 13.6 0.0 0.18 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5124) Spore_GerAC PF05504.11 CQR53815.1 - 6e-24 85.1 0.0 8.3e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal Spore_permease PF03845.13 CQR53817.1 - 1.3e-50 172.0 28.1 1.6e-50 171.8 28.1 1.1 1 0 0 1 1 1 1 Spore germination protein Trp_Tyr_perm PF03222.13 CQR53817.1 - 0.32 10.0 25.0 0.69 8.9 25.0 1.7 1 1 0 1 1 1 0 Tryptophan/tyrosine permease family GerA PF03323.13 CQR53819.1 - 1.9e-179 597.0 0.1 2.2e-179 596.8 0.1 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein RQC PF09382.10 CQR53821.1 - 1.9e-33 114.6 0.1 1.2e-32 112.1 0.0 2.1 2 0 0 2 2 2 1 RQC domain Helicase_C PF00271.31 CQR53821.1 - 6.4e-23 81.2 0.0 1.6e-18 67.1 0.0 3.3 3 0 0 3 3 3 2 Helicase conserved C-terminal domain HRDC PF00570.23 CQR53821.1 - 2.3e-19 69.1 0.0 5.4e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 HRDC domain RecQ_Zn_bind PF16124.5 CQR53821.1 - 3.4e-17 62.9 3.6 7.7e-17 61.8 3.6 1.7 1 0 0 1 1 1 1 RecQ zinc-binding DEAD PF00270.29 CQR53821.1 - 6.2e-16 58.7 0.0 1.8e-15 57.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_Sgs1 PF11408.8 CQR53821.1 - 0.0038 17.2 0.0 0.0085 16.1 0.0 1.5 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.15 CQR53821.1 - 0.024 14.6 0.0 0.046 13.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF4080 PF13311.6 CQR53824.1 - 3.8e-45 154.4 1.6 4.5e-45 154.2 0.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4080) B12-binding PF02310.19 CQR53824.1 - 3e-18 66.0 0.0 7.2e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 CQR53824.1 - 5.3e-17 62.7 0.1 1.1e-15 58.4 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 CQR53826.1 - 2.1e-05 24.7 0.0 3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 CQR53826.1 - 0.0003 21.5 0.0 0.00037 21.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR53826.1 - 0.0069 16.3 0.0 0.014 15.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53826.1 - 0.011 16.1 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR53826.1 - 0.012 15.2 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Hydrolase_4 PF12146.8 CQR53828.1 - 4.7e-52 176.6 0.0 5.4e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR53828.1 - 1.2e-07 32.6 0.4 1.6e-07 32.2 0.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 CQR53828.1 - 4.7e-05 23.1 0.0 0.00073 19.3 0.0 2.5 2 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR53828.1 - 0.0055 16.2 0.0 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 Prolyl oligopeptidase family LIDHydrolase PF10230.9 CQR53828.1 - 0.05 13.1 0.0 0.086 12.4 0.0 1.5 1 1 0 1 1 1 0 Lipid-droplet associated hydrolase PMI_typeI PF01238.21 CQR53830.1 - 9.2e-19 67.9 0.0 1.6e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Phosphomannose isomerase type I Cupin_2 PF07883.11 CQR53830.1 - 9.9e-08 31.6 0.1 0.002 17.8 0.0 2.8 2 0 0 2 2 2 2 Cupin domain AraC_binding PF02311.19 CQR53830.1 - 0.00078 19.4 0.0 0.42 10.5 0.0 2.4 2 0 0 2 2 2 2 AraC-like ligand binding domain Cupin_1 PF00190.22 CQR53830.1 - 0.013 15.1 0.0 0.3 10.7 0.0 2.2 2 0 0 2 2 2 0 Cupin Cupin_3 PF05899.12 CQR53830.1 - 0.015 15.0 0.2 0.69 9.6 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF861) Cupin_6 PF12852.7 CQR53830.1 - 0.063 13.0 0.0 0.98 9.1 0.0 2.2 2 0 0 2 2 2 0 Cupin rRNA_methylase PF06962.12 CQR53832.1 - 1.6e-41 141.5 0.0 2e-41 141.2 0.0 1.1 1 0 0 1 1 1 1 Putative rRNA methylase Methyltransf_31 PF13847.6 CQR53832.1 - 6.4e-07 29.3 0.0 1.6e-06 28.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR53832.1 - 2.1e-06 28.4 0.0 8.2e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 CQR53832.1 - 0.00061 19.4 0.0 0.0023 17.5 0.0 1.7 2 0 0 2 2 2 1 MraW methylase family Ubie_methyltran PF01209.18 CQR53832.1 - 0.0028 17.1 0.0 0.0049 16.2 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 CQR53832.1 - 0.0061 17.6 0.0 0.018 16.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 CQR53832.1 - 0.0083 16.3 0.0 0.015 15.4 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_12 PF08242.12 CQR53832.1 - 0.0095 16.7 0.0 0.11 13.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR53832.1 - 0.012 16.2 0.1 0.067 13.8 0.1 2.1 1 1 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.10 CQR53832.1 - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Radical_SAM_C PF16199.5 CQR53834.1 - 7.4e-25 86.8 0.1 1.4e-24 85.9 0.1 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 CQR53834.1 - 2.1e-15 57.5 0.0 3.6e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Methyltransf_4 PF02390.17 CQR53838.1 - 1e-37 129.3 0.0 1.2e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.6 CQR53838.1 - 0.0075 16.9 0.0 0.012 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR53838.1 - 0.0088 15.8 0.0 0.033 14.0 0.0 1.9 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR53838.1 - 0.021 15.5 0.0 0.054 14.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 CQR53838.1 - 0.027 14.3 0.0 0.14 12.0 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain MGDG_synth PF06925.11 CQR53841.1 - 3.3e-29 102.1 0.2 5.3e-29 101.5 0.2 1.3 1 0 0 1 1 1 1 Monogalactosyldiacylglycerol (MGDG) synthase Glyco_tran_28_C PF04101.16 CQR53841.1 - 8.5e-07 29.1 0.0 1.5e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 CQR53841.1 - 0.074 13.0 1.4 0.21 11.6 1.4 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 PAP2 PF01569.21 CQR53843.1 - 2e-17 63.2 6.0 2e-17 63.2 6.0 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 CQR53843.1 - 4.2e-07 29.9 12.6 1.8e-06 27.8 12.6 1.8 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 CQR53843.1 - 0.0013 19.2 1.9 0.0017 18.9 0.3 1.9 2 0 0 2 2 2 1 PAP2 superfamily C-terminal Glyco_tranf_2_3 PF13641.6 CQR53845.1 - 5.8e-27 95.1 0.0 7.2e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 CQR53845.1 - 4.8e-16 59.3 9.1 1.5e-15 57.6 9.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 CQR53845.1 - 2.6e-12 46.9 0.0 4.4e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 CQR53845.1 - 4.3e-09 36.1 0.1 9.9e-09 34.9 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 CQR53845.1 - 3.5e-06 27.4 0.1 7.2e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Chitin_synth_2 PF03142.15 CQR53845.1 - 0.0019 16.9 6.2 0.15 10.6 0.0 3.3 4 0 0 4 4 4 2 Chitin synthase Anp1 PF03452.14 CQR53845.1 - 0.0045 16.4 0.0 0.0073 15.7 0.0 1.3 1 0 0 1 1 1 1 Anp1 IF3_C PF00707.22 CQR53848.1 - 3.3e-37 126.3 0.5 5.9e-37 125.5 0.5 1.4 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.16 CQR53848.1 - 1.5e-33 114.9 0.4 3e-33 113.9 0.4 1.5 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain GH43_C2 PF17851.1 CQR53848.1 - 0.11 12.2 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Beta xylosidase C-terminal Concanavalin A-like domain Bact_lectin PF18483.1 CQR53848.1 - 0.19 11.7 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial lectin Ribosomal_L35p PF01632.19 CQR53851.1 - 2e-20 73.0 5.1 2.2e-20 72.9 5.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 Ribosomal_L20 PF00453.18 CQR53852.1 - 6.4e-46 154.9 4.2 7.4e-46 154.7 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 4HBT PF03061.22 CQR53854.1 - 8.6e-16 58.1 0.0 1.5e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 CQR53854.1 - 0.021 15.3 0.0 0.027 15.0 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Bmp PF02608.14 CQR53857.1 - 6.3e-86 288.1 8.7 7.2e-86 287.9 8.7 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like LPAM_2 PF13627.6 CQR53857.1 - 0.23 11.4 1.7 0.5 10.3 1.7 1.6 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site ABC_tran PF00005.27 CQR53860.1 - 1.2e-53 181.3 0.6 1.6e-30 106.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR53860.1 - 3.9e-07 30.2 0.0 0.033 14.0 0.0 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR53860.1 - 7.2e-05 22.4 0.3 0.0081 15.9 0.0 2.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR53860.1 - 0.00059 19.8 1.9 0.035 14.0 0.0 2.6 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 CQR53860.1 - 0.0034 16.8 2.0 0.039 13.4 0.3 2.9 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR53860.1 - 0.0037 17.0 1.7 1.1 8.9 0.1 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 CQR53860.1 - 0.0067 16.9 0.0 0.014 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 CQR53860.1 - 0.012 15.5 0.1 0.027 14.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_30 PF13604.6 CQR53860.1 - 0.053 13.2 0.1 0.35 10.6 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 CQR53860.1 - 0.055 13.1 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR53860.1 - 0.062 13.4 0.3 1.3 9.1 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase BPD_transp_2 PF02653.16 CQR53862.1 - 2.5e-42 144.9 30.3 2.5e-42 144.9 30.3 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component VAR1 PF05316.12 CQR53862.1 - 0.076 12.0 0.1 0.11 11.6 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein (VAR1) Insulin_TMD PF17870.1 CQR53862.1 - 0.12 12.5 0.2 0.12 12.5 0.2 3.6 4 0 0 4 4 4 0 Insulin receptor trans-membrane segment BPD_transp_2 PF02653.16 CQR53864.1 - 1.7e-43 148.7 31.0 2.1e-43 148.4 31.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Acetyltransf_1 PF00583.25 CQR53868.1 - 3.5e-12 46.6 0.0 4e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR53868.1 - 2.1e-09 37.4 0.0 2.6e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR53868.1 - 4.8e-08 33.3 0.0 6.7e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53868.1 - 0.0044 16.9 0.0 0.01 15.8 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.7 CQR53868.1 - 0.047 13.8 0.0 0.059 13.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TPP_enzyme_N PF02776.18 CQR53871.1 - 4.7e-56 189.1 0.3 6.9e-55 185.3 0.1 2.2 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 CQR53871.1 - 4.7e-53 179.1 2.3 6.1e-52 175.5 0.1 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 CQR53871.1 - 7.5e-50 168.2 0.0 1.3e-49 167.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 CQR53871.1 - 0.0048 16.7 0.1 0.011 15.5 0.1 1.6 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.9 CQR53872.1 - 1.5e-29 102.0 1.0 3.8e-29 100.7 0.3 1.9 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 CQR53872.1 - 5.6e-16 58.1 0.1 1e-15 57.3 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 CQR53872.1 - 2.6e-15 55.9 0.4 6e-15 54.7 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 CQR53872.1 - 3.3e-05 24.4 0.3 6.8e-05 23.4 0.3 1.5 1 0 0 1 1 1 1 ACT domain Hen1_L PF12623.7 CQR53872.1 - 0.024 13.7 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 RNA repair, ligase-Pnkp-associating, region of Hen1 ACT_6 PF13740.6 CQR53872.1 - 0.036 14.1 0.5 2.6 8.1 0.1 2.6 2 1 0 2 2 2 0 ACT domain Saccharop_dh_N PF04455.12 CQR53872.1 - 0.055 13.9 0.2 0.13 12.7 0.1 1.7 1 1 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region IlvN PF07991.12 CQR53874.1 - 6.7e-77 256.7 1.0 9.5e-77 256.2 1.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 CQR53874.1 - 7.2e-66 220.9 0.1 9.9e-66 220.5 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 CQR53874.1 - 7.8e-09 35.1 0.0 1.3e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 CQR53874.1 - 1.2e-06 28.9 0.1 3.5e-06 27.5 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CQR53874.1 - 3.9e-06 27.1 0.0 8.1e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 CQR53874.1 - 5.1e-06 26.7 0.1 1.1e-05 25.5 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 CQR53874.1 - 0.0041 16.8 0.2 0.017 14.8 0.2 2.0 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 CQR53874.1 - 0.016 15.5 0.2 0.063 13.6 0.1 2.0 2 0 0 2 2 2 0 Mur ligase family, catalytic domain CoA_binding_2 PF13380.6 CQR53874.1 - 0.07 13.6 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain CoA_binding PF02629.19 CQR53874.1 - 0.098 13.4 0.1 0.26 12.0 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain NAD_Gly3P_dh_N PF01210.23 CQR53874.1 - 0.11 12.4 0.3 1.1 9.2 0.0 2.4 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HMGL-like PF00682.19 CQR53876.1 - 6.8e-91 304.5 0.4 1.1e-90 303.8 0.4 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 CQR53876.1 - 5.9e-35 120.1 0.3 5.9e-35 120.1 0.3 1.7 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Collagen_bind PF05737.12 CQR53877.1 - 8.6e-73 242.7 44.9 7.1e-18 65.1 0.1 5.8 6 0 0 6 6 6 5 Collagen binding domain SpaA PF17802.1 CQR53877.1 - 2.8e-16 59.6 0.1 2.8e-16 59.6 0.1 5.5 5 1 0 5 5 5 1 Prealbumin-like fold domain Big_8 PF17961.1 CQR53877.1 - 7.3e-11 42.1 0.4 7.3e-11 42.1 0.4 6.1 6 0 0 6 6 6 2 Bacterial Ig domain Cadherin_5 PF17892.1 CQR53877.1 - 6.7e-07 29.2 1.3 5.3e-06 26.3 0.1 3.4 2 0 0 2 2 2 1 Cadherin-like domain SdrD_B PF17210.3 CQR53877.1 - 0.00015 22.0 0.1 0.00015 22.0 0.1 4.1 4 0 0 4 4 4 1 SdrD B-like domain Gram_pos_anchor PF00746.21 CQR53877.1 - 0.0003 20.7 1.1 0.0035 17.2 0.2 3.1 3 1 1 4 4 4 1 LPXTG cell wall anchor motif Big_9 PF17963.1 CQR53877.1 - 0.007 17.1 33.1 0.007 17.1 33.1 8.0 7 3 2 9 9 9 1 Bacterial Ig domain Response_reg PF00072.24 CQR53878.1 - 5.5e-23 81.3 0.1 1.1e-22 80.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain BTAD PF03704.17 CQR53878.1 - 5.6e-13 49.6 0.1 1.1e-12 48.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial transcriptional activator domain Trans_reg_C PF00486.28 CQR53878.1 - 7.2e-08 32.4 0.0 2.4e-07 30.7 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal TPR_11 PF13414.6 CQR53878.1 - 0.0012 18.5 0.0 0.003 17.2 0.0 1.7 1 0 0 1 1 1 1 TPR repeat TPR_14 PF13428.6 CQR53878.1 - 0.012 16.4 0.0 0.085 13.7 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat PsiA PF06952.11 CQR53878.1 - 0.13 11.5 0.9 3.7 6.7 0.1 2.3 2 0 0 2 2 2 0 PsiA protein Sigma70_r2 PF04542.14 CQR53880.1 - 5.5e-20 70.9 0.2 9.3e-20 70.2 0.2 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR53880.1 - 3.5e-16 58.6 0.1 6.3e-16 57.8 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR53880.1 - 2e-08 33.6 0.1 3.5e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR53880.1 - 2.5e-06 27.5 0.3 3e-06 27.3 0.3 1.1 1 0 0 1 1 1 1 ECF sigma factor UPF0122 PF04297.14 CQR53880.1 - 7.8e-05 22.8 0.1 0.00015 22.0 0.1 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.19 CQR53880.1 - 0.0039 16.7 0.2 0.0078 15.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_16 PF12645.7 CQR53880.1 - 0.0045 17.0 0.0 0.0096 15.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR53880.1 - 0.0052 16.5 2.2 0.0087 15.8 0.0 2.6 3 1 1 4 4 4 1 Homeodomain-like domain Phage_antitermQ PF06530.12 CQR53880.1 - 0.0079 16.1 0.3 0.013 15.4 0.3 1.3 1 0 0 1 1 1 1 Phage antitermination protein Q DUF1804 PF08822.11 CQR53880.1 - 0.023 14.7 2.3 0.05 13.6 0.1 2.5 1 1 1 3 3 3 0 Protein of unknown function (DUF1804) HTH_40 PF14493.6 CQR53880.1 - 0.031 14.7 0.0 0.069 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1492 PF07374.11 CQR53880.1 - 0.061 13.5 0.1 0.097 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_28 PF13518.6 CQR53880.1 - 0.072 13.2 1.1 0.98 9.6 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain PELOTA_1 PF15608.6 CQR53880.1 - 0.08 12.8 0.2 7.2 6.6 0.0 2.4 1 1 1 2 2 2 0 PELOTA RNA binding domain Ribonuc_red_lgN PF00317.21 CQR53880.1 - 0.081 12.9 0.1 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain HTH_10 PF04967.12 CQR53880.1 - 0.087 12.6 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain zf-HC2 PF13490.6 CQR53882.1 - 1.9e-10 40.8 0.6 3.5e-10 39.9 0.6 1.5 1 0 0 1 1 1 1 Putative zinc-finger zf-RING_7 PF02591.15 CQR53882.1 - 0.12 12.5 0.2 0.23 11.7 0.2 1.4 1 0 0 1 1 1 0 C4-type zinc ribbon domain COX4 PF02936.14 CQR53883.1 - 0.095 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV DUF4097 PF13349.6 CQR53886.1 - 2.8e-17 62.9 13.9 7.4e-16 58.2 12.8 2.0 1 1 0 2 2 2 2 Putative adhesin Aldo_ket_red PF00248.21 CQR53887.1 - 2.6e-62 210.7 0.0 3.2e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Iso_dh PF00180.20 CQR53890.1 - 7.9e-135 449.5 0.0 9e-135 449.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase AhpC-TSA PF00578.21 CQR53892.1 - 3.1e-41 140.2 0.0 3.7e-41 139.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR53892.1 - 4.8e-18 65.3 0.0 5.6e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 CQR53892.1 - 0.0088 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 SCO1/SenC HATPase_c PF02518.26 CQR53896.1 - 8.9e-20 71.3 0.4 1.5e-19 70.6 0.4 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR53896.1 - 2e-13 50.1 0.7 4.1e-13 49.2 0.1 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 CQR53896.1 - 1.3e-06 28.5 0.0 3e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 CQR53896.1 - 2e-05 24.6 0.0 3.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 CQR53896.1 - 2.3e-05 24.3 0.0 4.8e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 CQR53896.1 - 4.5e-05 23.3 0.0 7.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 CQR53896.1 - 0.00017 21.4 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 CQR53896.1 - 0.00031 21.0 0.0 0.00051 20.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 CQR53896.1 - 0.12 12.7 0.0 0.33 11.2 0.0 1.8 1 0 0 1 1 1 0 PAS domain Peptidase_M17 PF00883.21 CQR53898.1 - 1.7e-114 382.3 0.2 2.6e-114 381.7 0.2 1.3 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 CQR53898.1 - 2.6e-14 53.2 0.0 5.3e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain PDZ_2 PF13180.6 CQR53898.1 - 0.1 12.9 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 PDZ domain FeoB_associated PF12669.7 CQR53902.1 - 7.8e-10 39.0 3.2 7.8e-10 39.0 3.2 1.4 1 1 0 1 1 1 1 FeoB-associated Cys-rich membrane protein FeoB_N PF02421.18 CQR53904.1 - 1.9e-56 189.9 0.0 2.9e-56 189.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 CQR53904.1 - 7e-44 148.7 16.6 5.1e-31 107.2 2.5 2.9 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 CQR53904.1 - 6e-19 67.5 0.3 6e-19 67.5 0.3 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 CQR53904.1 - 2.8e-15 56.4 0.0 7.9e-15 54.9 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 CQR53904.1 - 5.5e-11 42.9 0.0 9.9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 CQR53904.1 - 0.00011 21.7 0.0 0.0002 20.8 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 CQR53904.1 - 0.12 12.5 0.0 8.4 6.4 0.0 2.4 2 0 0 2 2 2 0 Dynamin family FeoA PF04023.14 CQR53907.1 - 1.4e-16 60.4 0.1 1.6e-16 60.3 0.1 1.0 1 0 0 1 1 1 1 FeoA domain HMGL-like PF00682.19 CQR53909.1 - 6.9e-29 101.2 0.0 4.6e-28 98.5 0.0 1.9 1 1 0 1 1 1 1 HMGL-like EAL PF00563.20 CQR53912.1 - 5.5e-71 238.9 0.0 9.2e-71 238.1 0.0 1.4 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR53912.1 - 2.1e-35 121.9 0.1 4e-35 120.9 0.1 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain MASE3 PF17159.4 CQR53912.1 - 1.4e-23 83.8 15.5 2.1e-23 83.2 15.5 1.2 1 0 0 1 1 1 1 Membrane-associated sensor domain Beta-lactamase PF00144.24 CQR53915.1 - 2.7e-67 227.3 0.1 5e-67 226.5 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase SLH PF00395.20 CQR53915.1 - 1.2e-25 89.2 1.4 1.4e-11 44.2 0.2 3.5 3 0 0 3 3 3 2 S-layer homology domain Beta-lactamase2 PF13354.6 CQR53915.1 - 0.00043 19.9 0.0 0.014 15.0 0.1 2.5 2 1 0 2 2 2 1 Beta-lactamase enzyme family Peptidase_S11 PF00768.20 CQR53915.1 - 0.0095 15.4 0.0 0.06 12.8 0.0 2.0 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase RVT_1 PF00078.27 CQR53917.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR53917.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR53917.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase Peptidase_M20 PF01546.28 CQR53918.1 - 2.7e-40 138.3 0.0 3.5e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR53918.1 - 2.5e-21 75.7 0.0 4.7e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain UPF0020 PF01170.18 CQR53921.1 - 1.6e-08 34.5 0.5 1.4e-07 31.4 0.5 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 CQR53921.1 - 3.1e-05 23.7 0.0 6.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 CQR53921.1 - 5.2e-05 23.1 0.1 9.9e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR53921.1 - 0.00017 22.2 0.1 0.00093 19.9 0.0 2.3 2 1 1 3 3 3 1 Methyltransferase domain N6_N4_Mtase PF01555.18 CQR53921.1 - 0.0072 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_12 PF08242.12 CQR53921.1 - 0.085 13.6 0.0 0.17 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 CQR53921.1 - 0.11 13.1 0.1 0.74 10.5 0.0 2.3 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_23 PF13489.6 CQR53921.1 - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Nudix_N PF12535.8 CQR53923.1 - 2.6e-25 87.8 1.6 5.2e-25 86.8 1.6 1.5 1 0 0 1 1 1 1 Hydrolase of X-linked nucleoside diphosphate N terminal NUDIX PF00293.28 CQR53923.1 - 7e-12 45.5 0.4 1e-11 45.0 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain Raf1_HTH PF18579.1 CQR53923.1 - 0.048 13.3 0.1 0.94 9.2 0.1 2.3 2 0 0 2 2 2 0 Rubisco accumulation factor 1 helix turn helix domain ABC_tran PF00005.27 CQR53926.1 - 5.1e-49 166.3 0.2 3.2e-26 92.5 0.0 3.1 3 1 0 3 3 2 2 ABC transporter ABC_tran_Xtn PF12848.7 CQR53926.1 - 7e-25 86.9 6.1 1.5e-21 76.2 2.3 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR53926.1 - 4.8e-21 75.9 12.3 1.9e-06 27.9 0.0 4.6 4 1 1 5 5 5 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53926.1 - 1.9e-11 43.8 0.0 0.0092 15.4 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain ABC_tran_CTD PF16326.5 CQR53926.1 - 9e-08 32.3 3.9 9e-08 32.3 3.9 3.9 4 0 0 4 4 3 2 ABC transporter C-terminal domain AAA_29 PF13555.6 CQR53926.1 - 1.9e-06 27.5 0.8 0.0078 15.9 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR53926.1 - 5.4e-06 26.4 0.1 0.059 13.3 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase ATP-synt_ab PF00006.25 CQR53926.1 - 5.6e-05 22.9 0.0 0.014 15.0 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.6 CQR53926.1 - 6.8e-05 23.2 0.2 0.45 10.7 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR53926.1 - 7.4e-05 23.0 2.2 0.4 10.9 0.0 3.8 2 2 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.23 CQR53926.1 - 0.00018 21.6 0.2 0.67 10.0 0.0 2.8 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_23 PF13476.6 CQR53926.1 - 0.00053 20.6 15.8 0.13 12.8 0.4 3.6 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 CQR53926.1 - 0.00071 19.8 2.9 1.3 9.3 0.3 4.3 3 2 0 3 3 3 1 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.9 CQR53926.1 - 0.0011 18.7 0.5 0.069 12.9 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.12 CQR53926.1 - 0.0036 17.2 0.1 2.6 7.9 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_15 PF13175.6 CQR53926.1 - 0.0072 16.1 12.0 0.09 12.5 0.1 3.5 4 1 0 4 4 3 2 AAA ATPase domain AAA_13 PF13166.6 CQR53926.1 - 0.0075 15.0 2.0 3.3 6.2 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.6 CQR53926.1 - 0.019 14.5 2.1 8.4 5.9 0.1 4.0 5 0 0 5 5 5 0 AAA domain Roc PF08477.13 CQR53926.1 - 0.02 15.1 0.1 2.8 8.2 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MukB PF04310.12 CQR53926.1 - 0.032 14.0 0.0 0.34 10.7 0.0 2.3 2 0 0 2 2 2 0 MukB N-terminal AAA_24 PF13479.6 CQR53926.1 - 0.049 13.4 0.5 11 5.6 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 CQR53926.1 - 0.061 13.7 0.4 3.4 8.1 0.0 3.0 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) FeoB_N PF02421.18 CQR53926.1 - 0.063 12.8 0.1 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_16 PF13191.6 CQR53926.1 - 0.086 13.2 7.4 2.5 8.4 0.2 3.7 4 1 0 4 4 3 0 AAA ATPase domain AAA_30 PF13604.6 CQR53926.1 - 0.089 12.5 0.3 1.6 8.4 0.1 2.9 3 1 0 3 3 2 0 AAA domain Dynamin_N PF00350.23 CQR53926.1 - 0.093 12.8 1.7 1.1 9.3 0.0 2.9 3 0 0 3 3 3 0 Dynamin family AAA_33 PF13671.6 CQR53926.1 - 0.097 12.8 0.0 13 6.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 CQR53926.1 - 0.1 11.9 0.1 12 5.1 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin DUF87 PF01935.17 CQR53926.1 - 0.13 12.3 1.0 24 4.9 0.0 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_18 PF13238.6 CQR53926.1 - 0.14 12.7 0.5 8.8 6.9 0.0 3.0 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR53926.1 - 0.15 11.3 0.3 3.1 6.9 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain SRPRB PF09439.10 CQR53926.1 - 0.17 11.3 0.0 0.49 9.8 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit TsaE PF02367.17 CQR53926.1 - 0.2 11.7 1.8 20 5.2 0.1 3.3 4 0 0 4 4 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 CQR53926.1 - 0.26 11.2 0.9 18 5.2 0.0 3.5 4 0 0 4 4 4 0 NTPase AAA_7 PF12775.7 CQR53926.1 - 0.3 10.6 0.5 40 3.7 0.0 2.8 3 0 0 3 3 3 0 P-loop containing dynein motor region DUF3408 PF11888.8 CQR53927.1 - 0.0047 17.1 0.3 0.005 17.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3408) bPH_1 PF08000.11 CQR53928.1 - 8.9e-49 164.6 0.0 9.9e-49 164.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial PH domain bPH_3 PF14470.6 CQR53928.1 - 2.4e-07 31.0 0.1 5e-07 30.0 0.1 1.6 1 1 1 2 2 2 1 Bacterial PH domain Myosin_TH1 PF06017.13 CQR53928.1 - 0.0026 17.5 0.0 0.0026 17.5 0.0 1.1 1 0 0 1 1 1 1 Unconventional myosin tail, actin- and lipid-binding G_glu_transpept PF01019.21 CQR53929.1 - 2e-144 482.2 0.0 2.3e-144 482.0 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Amidase PF01425.21 CQR53930.1 - 7.1e-60 203.2 2.1 5.4e-50 170.7 4.7 2.0 2 0 0 2 2 2 2 Amidase PucR PF07905.11 CQR53932.1 - 6.3e-30 103.8 0.0 3.5e-29 101.5 0.0 2.1 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family HTH_30 PF13556.6 CQR53932.1 - 1.6e-20 72.6 0.2 5e-20 71.1 0.2 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_1 PF00126.27 CQR53932.1 - 0.091 12.7 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Spectrin PF00435.21 CQR53932.1 - 0.3 11.6 1.4 12 6.4 0.1 2.7 3 0 0 3 3 3 0 Spectrin repeat Bmp PF02608.14 CQR53933.1 - 3.5e-53 180.5 0.2 4.5e-53 180.2 0.2 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF3558 PF12079.8 CQR53933.1 - 0.19 11.7 1.8 0.3 11.1 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) ABC_tran PF00005.27 CQR53934.1 - 3e-46 157.3 0.0 3.7e-30 105.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR53934.1 - 3.7e-06 27.0 0.0 0.098 12.5 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 CQR53934.1 - 0.00022 20.9 0.1 0.00073 19.2 0.1 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR53934.1 - 0.0072 16.1 0.1 0.02 14.6 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR53934.1 - 0.01 15.5 0.6 0.062 13.0 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR53934.1 - 0.011 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR53934.1 - 0.044 13.5 0.2 0.37 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 CQR53934.1 - 0.067 12.6 0.9 0.56 9.6 0.9 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR53934.1 - 0.3 11.0 2.0 0.38 10.6 0.1 2.1 3 0 0 3 3 3 0 RsgA GTPase BPD_transp_2 PF02653.16 CQR53935.1 - 5.8e-45 153.5 37.8 1.4e-44 152.3 33.9 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 CQR53936.1 - 1.8e-31 109.3 30.7 2.1e-31 109.1 30.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component OHCU_decarbox PF09349.10 CQR53937.1 - 3.2e-42 144.6 0.4 3.6e-42 144.5 0.4 1.0 1 0 0 1 1 1 1 OHCU decarboxylase KAP_NTPase PF07693.14 CQR53937.1 - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Transthyretin PF00576.21 CQR53938.1 - 2e-31 108.9 0.0 2.2e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family bMG3 PF11974.8 CQR53938.1 - 0.031 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Amidohydro_1 PF01979.20 CQR53939.1 - 4.5e-26 92.0 0.0 6.2e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR53939.1 - 6.6e-18 65.4 0.4 1.4e-09 37.9 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family Sh_2 PF17512.2 CQR53939.1 - 0.003 17.4 0.0 0.025 14.3 0.0 2.1 2 0 0 2 2 2 1 Metapneumovirus Small hydrophobic protein DHOase PF12890.7 CQR53939.1 - 0.011 15.6 0.0 0.17 11.8 0.0 2.4 2 0 0 2 2 2 0 Dihydro-orotase-like Urease_alpha PF00449.20 CQR53939.1 - 0.049 14.0 0.1 0.098 13.0 0.1 1.5 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain Peptidase_M20 PF01546.28 CQR53940.1 - 2.7e-31 108.9 0.2 7.7e-31 107.4 0.2 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 CQR53940.1 - 2.4e-09 37.2 0.0 2e-08 34.2 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 M20_dimer PF07687.14 CQR53940.1 - 8.3e-05 22.5 0.1 0.00017 21.4 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Aminotran_5 PF00266.19 CQR53941.1 - 2.1e-31 109.2 0.0 1.2e-30 106.8 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Pyridoxal_deC PF00282.19 CQR53941.1 - 0.025 13.3 0.2 1.7 7.3 0.1 2.3 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain B12-binding PF02310.19 CQR53941.1 - 0.029 14.4 0.1 0.058 13.4 0.1 1.5 1 0 0 1 1 1 0 B12 binding domain Adenine_deam_C PF13382.6 CQR53942.1 - 3.9e-48 163.0 1.1 3.9e-48 163.0 1.1 1.8 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 CQR53942.1 - 1.8e-17 63.7 0.9 5.6e-16 58.8 0.9 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR53942.1 - 1.2e-11 44.8 0.3 2e-06 27.6 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family RVT_1 PF00078.27 CQR53943.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR53943.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR53943.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase IDEAL PF08858.10 CQR53944.1 - 1.8e-05 24.3 0.1 3.2e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 IDEAL domain Ferrochelatase PF00762.19 CQR53945.1 - 2.2e-91 306.2 0.0 2.5e-91 306.1 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 CQR53945.1 - 8.2e-06 26.1 0.0 0.00019 21.7 0.0 2.5 3 0 0 3 3 3 1 CbiX FMN_bind PF04205.14 CQR53946.1 - 1.6e-24 86.2 21.2 3.1e-09 37.3 0.6 5.7 6 1 0 6 6 6 3 FMN-binding domain DUF2271 PF10029.9 CQR53946.1 - 0.00049 19.7 4.5 3 7.5 0.0 4.5 4 0 0 4 4 4 2 Predicted periplasmic protein (DUF2271) Urease_alpha PF00449.20 CQR53946.1 - 0.021 15.1 0.6 9 6.7 0.1 3.4 3 0 0 3 3 3 0 Urease alpha-subunit, N-terminal domain HD PF01966.22 CQR53947.1 - 9.1e-09 35.6 0.2 1.6e-08 34.8 0.2 1.4 1 0 0 1 1 1 1 HD domain tRNA_anti-codon PF01336.25 CQR53947.1 - 0.00046 20.1 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain SBP_bac_8 PF13416.6 CQR53948.1 - 1.9e-25 90.2 10.7 2e-25 90.2 10.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR53949.1 - 1.5e-17 63.9 15.7 1.5e-17 63.9 15.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3917 PF13055.6 CQR53949.1 - 8.4 6.9 9.0 0.73 10.3 0.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3917) BPD_transp_1 PF00528.22 CQR53950.1 - 1.6e-20 73.6 15.0 1.6e-20 73.6 15.0 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_holin_3_6 PF07332.11 CQR53950.1 - 0.0063 16.5 2.4 0.0063 16.5 2.4 2.1 3 0 0 3 3 3 1 Putative Actinobacterial Holin-X, holin superfamily III PfkB PF00294.24 CQR53951.1 - 1.4e-56 192.1 0.0 1.7e-56 191.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR53951.1 - 2e-05 24.1 0.0 3.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Isochorismatase PF00857.20 CQR53951.1 - 0.00067 19.9 0.0 0.0015 18.7 0.0 1.6 1 1 0 1 1 1 1 Isochorismatase family Alpha-amylase PF00128.24 CQR53952.1 - 7.6e-11 42.1 0.0 1.3e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Peripla_BP_3 PF13377.6 CQR53953.1 - 1e-34 120.3 0.0 1.7e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR53953.1 - 4.8e-24 83.9 0.6 4.8e-24 83.9 0.6 2.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR53953.1 - 7.8e-22 78.0 0.0 9.5e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR53953.1 - 5.9e-13 49.0 0.0 1.9e-12 47.3 0.0 1.8 2 1 0 2 2 2 1 Periplasmic binding protein domain HTH_Tnp_ISL3 PF13542.6 CQR53953.1 - 0.00028 20.2 0.4 0.00072 18.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 CQR53953.1 - 0.0033 17.4 0.0 0.0073 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR53953.1 - 0.0081 16.5 0.0 0.015 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 CQR53953.1 - 0.012 15.7 0.1 0.042 13.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase ATPgrasp_N PF18130.1 CQR53953.1 - 0.046 14.3 0.0 0.3 11.7 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp N-terminal domain Trp_repressor PF01371.19 CQR53953.1 - 0.048 13.8 0.1 0.18 12.0 0.1 2.0 1 0 0 1 1 1 0 Trp repressor protein TrmB PF01978.19 CQR53953.1 - 0.058 13.3 0.4 0.36 10.7 0.3 2.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_26 PF13443.6 CQR53953.1 - 0.092 13.2 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.6 CQR53953.1 - 0.11 12.3 0.0 1.2 9.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 CQR53953.1 - 0.12 12.0 1.0 0.25 10.9 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AraC PF00165.23 CQR53953.1 - 0.17 12.0 0.0 0.53 10.4 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family RNase_T PF00929.24 CQR53954.1 - 9.4e-21 75.0 0.0 1.1e-20 74.8 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 CQR53954.1 - 3.2e-10 40.2 0.0 1.2e-09 38.4 0.0 1.7 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like DNA_pol_A_exo1 PF01612.20 CQR53954.1 - 9.3e-06 25.5 0.0 1.4e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 3'-5' exonuclease LpqV PF17301.2 CQR53954.1 - 0.12 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative lipoprotein LpqV MFS_1 PF07690.16 CQR53955.1 - 7.5e-29 100.7 25.5 7.5e-29 100.7 25.5 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 CQR53955.1 - 1.6e-19 69.8 16.6 2.1e-19 69.4 16.6 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Acetyltransf_1 PF00583.25 CQR53956.1 - 2.9e-12 46.9 0.0 4.6e-12 46.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR53956.1 - 4.5e-11 43.0 0.0 1.1e-10 41.8 0.0 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR53956.1 - 5.4e-09 36.1 0.0 1.3e-08 34.9 0.0 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR53956.1 - 1.5e-05 24.8 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 CQR53956.1 - 0.0014 18.7 0.0 0.003 17.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 CQR53956.1 - 0.056 12.9 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase LysR_substrate PF03466.20 CQR53957.1 - 1.7e-37 128.8 0.0 2.1e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR53957.1 - 2.1e-16 59.6 0.0 5e-16 58.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR53957.1 - 0.0002 21.1 0.0 0.00049 19.9 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain DUF2089 PF09862.9 CQR53957.1 - 0.0091 16.0 0.0 0.027 14.5 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_24 PF13412.6 CQR53957.1 - 0.014 14.9 0.1 2.9 7.5 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Acetyltransf_7 PF13508.7 CQR53958.1 - 2.5e-08 34.2 0.0 3.9e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR53958.1 - 7.8e-07 29.3 0.0 9.9e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR53958.1 - 2.3e-06 27.5 0.0 3.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Endotoxin_N PF03945.14 CQR53958.1 - 0.1 12.3 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain SBP_bac_3 PF00497.20 CQR53959.1 - 1.2e-44 152.4 0.5 1.5e-44 152.1 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 CQR53959.1 - 3.4e-06 26.9 0.4 6.2e-06 26.0 0.4 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 CQR53959.1 - 2.9e-05 24.1 0.1 8.5e-05 22.6 0.1 1.7 2 0 0 2 2 2 1 NMT1/THI5 like NMT1_3 PF16868.5 CQR53959.1 - 0.0018 17.8 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 NMT1-like family LysR_substrate PF03466.20 CQR53959.1 - 0.027 13.8 0.0 0.04 13.3 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain Pilus_CpaD PF09476.10 CQR53959.1 - 0.076 12.7 0.6 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) BPD_transp_1 PF00528.22 CQR53961.1 - 5.9e-20 71.8 14.1 8.7e-20 71.2 14.1 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR53963.1 - 1.6e-14 54.1 16.5 1.6e-14 54.1 16.5 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR53965.1 - 2.8e-33 115.3 0.0 3.6e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR53965.1 - 5.9e-14 52.6 0.0 9.3e-06 25.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR53965.1 - 1.1e-08 34.8 0.0 4.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR53965.1 - 5.2e-06 27.0 0.1 7.7e-06 26.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR53965.1 - 1.8e-05 25.4 0.0 3e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 CQR53965.1 - 0.00022 20.1 0.0 0.042 12.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain ABC_ATPase PF09818.9 CQR53965.1 - 0.00068 18.5 0.6 1.8 7.3 0.1 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 CQR53965.1 - 0.00075 19.2 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR53965.1 - 0.0019 18.1 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 CQR53965.1 - 0.0024 17.6 0.1 0.0056 16.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 CQR53965.1 - 0.0028 17.6 0.1 0.0062 16.5 0.0 1.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 CQR53965.1 - 0.0037 17.5 0.2 0.0088 16.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 CQR53965.1 - 0.0042 16.7 0.0 0.0076 15.8 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 CQR53965.1 - 0.0088 16.5 0.1 0.25 11.8 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 CQR53965.1 - 0.012 15.6 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 CQR53965.1 - 0.014 14.5 0.0 0.024 13.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 CQR53965.1 - 0.014 15.6 0.3 0.046 13.9 0.2 2.0 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 CQR53965.1 - 0.017 15.4 0.1 0.026 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR53965.1 - 0.018 14.6 0.1 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 CQR53965.1 - 0.025 14.0 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 CQR53965.1 - 0.026 14.6 0.0 0.063 13.4 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 CQR53965.1 - 0.032 14.8 0.0 0.068 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR53965.1 - 0.039 14.2 0.1 0.17 12.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 CQR53965.1 - 0.045 12.9 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 CQR53965.1 - 0.05 13.3 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain PurL_C PF16904.5 CQR53965.1 - 0.075 13.3 0.1 0.22 11.8 0.1 1.8 2 0 0 2 2 1 0 Phosphoribosylformylglycinamidine synthase II C-terminus RecA PF00154.21 CQR53965.1 - 0.09 12.2 0.0 0.37 10.2 0.0 1.8 1 1 1 2 2 2 0 recA bacterial DNA recombination protein Rad17 PF03215.15 CQR53965.1 - 0.11 12.4 0.1 0.2 11.5 0.1 1.4 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_14 PF13173.6 CQR53965.1 - 0.12 12.5 0.0 0.3 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR53965.1 - 0.15 11.3 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain rve_3 PF13683.6 CQR53965.1 - 0.18 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain Bac_luciferase PF00296.20 CQR53968.1 - 1.2e-34 120.2 6.2 2e-34 119.5 6.2 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase SAVED PF18145.1 CQR53968.1 - 0.0026 17.6 0.1 0.0042 16.9 0.1 1.3 1 0 0 1 1 1 1 SMODS-associated and fused to various effectors sensor domain Peptidase_M20 PF01546.28 CQR53970.1 - 1.6e-31 109.6 0.5 2.4e-31 109.1 0.5 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR53970.1 - 1.2e-09 38.0 0.2 2.4e-09 37.1 0.2 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain RadC PF04002.15 CQR53970.1 - 0.024 14.6 0.0 0.25 11.3 0.0 2.4 2 0 0 2 2 2 0 RadC-like JAB domain Peptidase_M28 PF04389.17 CQR53970.1 - 0.028 14.1 0.0 0.99 9.1 0.0 2.2 2 0 0 2 2 2 0 Peptidase family M28 DAO PF01266.24 CQR53972.1 - 8.9e-48 163.6 0.9 1e-47 163.5 0.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 CQR53972.1 - 0.024 13.9 0.3 0.15 11.3 0.0 2.1 1 1 0 2 2 2 0 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 CQR53972.1 - 0.14 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DinB_2 PF12867.7 CQR53974.1 - 2.5e-13 50.6 0.1 3.1e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR53974.1 - 1.1e-05 25.9 0.1 2.2e-05 24.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF664) MDMPI_N PF11716.8 CQR53974.1 - 0.0009 20.0 1.2 0.0014 19.3 0.3 1.7 2 0 0 2 2 2 1 Mycothiol maleylpyruvate isomerase N-terminal domain DUF1572 PF07609.11 CQR53974.1 - 0.0088 15.8 0.1 0.023 14.5 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1572) DUF1569 PF07606.11 CQR53974.1 - 0.03 14.3 0.2 0.074 13.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1569) Bac_luciferase PF00296.20 CQR53976.1 - 1.5e-62 211.8 0.0 2.1e-62 211.4 0.0 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase Peptidase_M20 PF01546.28 CQR53979.1 - 1.7e-34 119.4 0.8 2.3e-34 118.9 0.8 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR53979.1 - 3.2e-09 36.7 0.6 7.9e-09 35.4 0.6 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain PspA_IM30 PF04012.12 CQR53982.1 - 2.7e-23 82.7 15.8 3.1e-23 82.5 15.8 1.1 1 0 0 1 1 1 1 PspA/IM30 family YabA PF06156.13 CQR53982.1 - 0.0098 16.5 4.5 0.92 10.2 0.2 2.7 3 0 0 3 3 3 2 Initiation control protein YabA MCM6_C PF18263.1 CQR53982.1 - 0.054 13.7 2.3 0.14 12.4 2.3 1.8 1 1 0 1 1 1 0 MCM6 C-terminal winged-helix domain Spectrin PF00435.21 CQR53982.1 - 0.11 13.0 5.7 0.28 11.7 0.9 2.6 2 1 1 3 3 3 0 Spectrin repeat ERM PF00769.19 CQR53982.1 - 1.5 8.6 21.9 3.9 7.2 9.2 2.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Syntaxin-6_N PF09177.11 CQR53982.1 - 4 8.1 7.6 6.4 7.4 0.5 2.7 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Spc7 PF08317.11 CQR53982.1 - 5 5.9 13.5 47 2.7 13.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein UPF0242 PF06785.11 CQR53982.1 - 5.5 7.1 10.8 3 7.9 1.8 2.2 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HAUS-augmin3 PF14932.6 CQR53982.1 - 9.3 5.7 11.8 4.1 6.9 7.5 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 PspC PF04024.12 CQR53983.1 - 1.7e-20 72.6 0.2 1.9e-20 72.4 0.2 1.0 1 0 0 1 1 1 1 PspC domain NqrM PF04400.13 CQR53983.1 - 0.063 13.0 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 (Na+)-NQR maturation NqrM HD_2 PF12917.7 CQR53986.1 - 4.3e-45 153.7 0.9 5.1e-45 153.5 0.9 1.0 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 CQR53986.1 - 3.2e-07 30.4 0.5 4.2e-07 30.0 0.5 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.22 CQR53986.1 - 5.1e-05 23.5 0.1 0.0001 22.5 0.1 1.5 1 0 0 1 1 1 1 HD domain DUF713 PF05218.14 CQR53986.1 - 0.037 13.8 1.9 0.75 9.5 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF713) Carb_anhydrase PF00194.21 CQR53989.1 - 4.4e-53 180.4 0.5 7.5e-53 179.7 0.5 1.4 1 1 0 1 1 1 1 Eukaryotic-type carbonic anhydrase DUF4592 PF15262.6 CQR53989.1 - 0.024 15.3 0.2 0.049 14.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4592) Pih1_fungal_CS PF18482.1 CQR53989.1 - 0.096 13.2 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 Fungal Pih1 CS domain SLH PF00395.20 CQR53991.1 - 2.7e-36 123.3 1.2 4.4e-13 49.0 0.0 4.1 3 0 0 3 3 3 3 S-layer homology domain Metallophos PF00149.28 CQR53991.1 - 1e-16 62.1 2.6 1.6e-16 61.5 0.4 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Pur_ac_phosph_N PF16656.5 CQR53991.1 - 6.6e-12 45.8 0.0 1.5e-11 44.7 0.0 1.7 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain Trypan_PARP PF05887.11 CQR53991.1 - 0.0008 19.4 17.3 0.002 18.1 17.3 1.7 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Cohesin PF00963.18 CQR53991.1 - 0.0011 19.2 1.6 0.012 15.9 0.1 2.7 3 0 0 3 3 3 1 Cohesin domain Big_7 PF17957.1 CQR53991.1 - 0.0065 17.2 0.1 0.024 15.4 0.1 2.1 1 0 0 1 1 1 1 Bacterial Ig domain HTH_18 PF12833.7 CQR53994.1 - 4.9e-18 65.2 0.0 7.8e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR53994.1 - 2.7e-14 52.8 0.2 3.9e-06 26.8 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR53994.1 - 1.5e-10 41.1 0.3 2.1e-10 40.6 0.3 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR53994.1 - 7.5e-06 25.6 0.0 1.2e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Cupin domain DUF2264 PF10022.9 CQR53996.1 - 1.2e-103 346.9 0.2 1.4e-103 346.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) Hepar_II_III PF07940.13 CQR53997.1 - 5.6e-06 26.2 0.2 8.6e-06 25.5 0.2 1.2 1 0 0 1 1 1 1 Heparinase II/III-like protein Glyco_hydro_88 PF07470.13 CQR53998.1 - 1.5e-20 73.6 0.1 1.8e-20 73.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.13 CQR53998.1 - 0.0031 17.1 0.3 0.017 14.6 0.2 2.1 1 1 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_127 PF07944.12 CQR53998.1 - 0.017 13.6 0.1 4 5.8 0.0 2.4 2 0 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 Amidase_2 PF01510.25 CQR53998.1 - 0.18 12.3 0.1 10 6.6 0.0 2.4 2 0 0 2 2 2 0 N-acetylmuramoyl-L-alanine amidase SNF PF00209.18 CQR54001.1 - 7.6e-52 176.7 31.5 1.5e-29 103.1 17.1 2.2 2 1 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short_C2 PF13561.6 CQR54003.1 - 3.2e-69 233.1 0.0 3.6e-69 232.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR54003.1 - 2e-57 193.8 0.1 2.6e-57 193.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR54003.1 - 3.3e-11 43.4 0.2 4.7e-11 42.9 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR54003.1 - 0.00031 20.3 0.0 0.00065 19.2 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 CQR54003.1 - 0.00049 20.0 0.2 0.00083 19.3 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.19 CQR54003.1 - 0.0036 16.3 0.0 0.01 14.8 0.0 1.7 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 CQR54003.1 - 0.0044 16.9 0.1 0.0055 16.6 0.1 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Ldh_1_N PF00056.23 CQR54003.1 - 0.012 15.7 0.1 0.02 15.0 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DFP PF04127.15 CQR54003.1 - 0.026 14.3 0.1 0.06 13.2 0.1 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Polysacc_synt_2 PF02719.15 CQR54003.1 - 0.093 11.8 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein 2-Hacid_dh_C PF02826.19 CQR54003.1 - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 CQR54003.1 - 0.19 10.8 0.1 0.26 10.4 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain ADC PF06314.11 CQR54005.1 - 2.1e-54 184.6 0.0 2.6e-54 184.3 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) HTH_30 PF13556.6 CQR54007.1 - 1.3e-18 66.5 2.4 2.7e-18 65.5 2.4 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GGDEF_2 PF17853.1 CQR54007.1 - 1.6e-05 25.1 0.0 8.9e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 GGDEF-like domain HTH_8 PF02954.19 CQR54007.1 - 0.041 13.7 0.2 0.13 12.0 0.2 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r2 PF04542.14 CQR54009.1 - 2.1e-18 65.8 0.0 5.7e-18 64.5 0.0 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR54009.1 - 1.5e-17 62.9 1.7 2.3e-17 62.2 0.4 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR54009.1 - 4e-06 26.5 0.0 2.3e-05 24.0 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 CQR54009.1 - 5.7e-06 26.3 0.3 1.3e-05 25.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 CQR54009.1 - 4.3e-05 23.3 0.0 8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_19 PF12844.7 CQR54009.1 - 0.00039 20.4 0.3 0.002 18.1 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR54009.1 - 0.0014 18.7 0.0 0.0049 17.0 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR54009.1 - 0.0015 18.0 0.0 0.0036 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding KORA PF16509.5 CQR54009.1 - 0.0017 18.6 0.2 0.0073 16.6 0.0 2.0 3 0 0 3 3 2 1 TrfB plasmid transcriptional repressor HTH_31 PF13560.6 CQR54009.1 - 0.0023 18.2 0.0 0.0031 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 CQR54009.1 - 0.0044 17.0 0.0 0.018 15.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix TrmB PF01978.19 CQR54009.1 - 0.0086 15.9 0.3 1.7 8.6 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 CQR54009.1 - 0.013 15.3 0.2 0.37 10.7 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 CQR54009.1 - 0.018 14.8 0.8 0.039 13.7 0.8 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.6 CQR54009.1 - 0.019 14.8 0.1 0.086 12.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR54009.1 - 0.04 13.9 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR54009.1 - 0.041 13.6 0.2 0.14 11.9 0.2 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.19 CQR54009.1 - 0.055 13.0 0.0 0.7 9.5 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.12 CQR54009.1 - 0.063 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_37 PF13744.6 CQR54009.1 - 0.075 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 CQR54009.1 - 0.11 12.7 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein KorB PF08535.10 CQR54009.1 - 0.11 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 KorB domain C1q PF00386.21 CQR54011.1 - 2.8e-07 30.8 0.8 4.5e-07 30.1 0.8 1.3 1 0 0 1 1 1 1 C1q domain BclA_C PF18573.1 CQR54011.1 - 3.8e-05 23.6 4.8 4.5e-05 23.4 4.1 1.5 1 1 0 1 1 1 1 BclA C-terminal domain Caleosin PF05042.13 CQR54011.1 - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Caleosin related protein BPD_transp_1 PF00528.22 CQR54013.1 - 3.2e-14 53.1 10.0 3.2e-14 53.1 10.0 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3955 PF13127.6 CQR54013.1 - 0.13 12.1 5.3 0.37 10.6 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) BPD_transp_1 PF00528.22 CQR54016.1 - 7.5e-13 48.6 5.7 7.5e-13 48.6 5.7 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR54018.1 - 1.8e-22 80.7 14.8 1.8e-22 80.7 14.8 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR54020.1 - 9.3e-23 80.5 0.0 2.2e-22 79.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54020.1 - 1.5e-19 70.0 0.0 4.7e-19 68.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54020.1 - 3.1e-14 52.6 1.8 3.6e-10 39.7 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family His_kinase PF06580.13 CQR54022.1 - 1.2e-21 76.8 1.6 2.3e-21 75.9 0.2 2.2 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR54022.1 - 5.6e-12 46.0 4.9 9.1e-12 45.3 4.9 1.3 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR54022.1 - 5e-10 39.9 0.1 1.4e-09 38.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR54022.1 - 0.00053 20.3 0.1 0.0011 19.2 0.1 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR54022.1 - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_5 PF01022.20 CQR54023.1 - 8.8e-10 38.3 0.0 1.4e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR54023.1 - 7e-06 26.0 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 CQR54023.1 - 4.4e-05 23.3 0.1 8.2e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR54023.1 - 9e-05 22.3 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 CQR54023.1 - 9.2e-05 22.3 0.1 0.00018 21.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR54023.1 - 0.0001 21.7 0.2 0.00043 19.8 0.2 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 CQR54023.1 - 0.0072 16.6 0.1 0.014 15.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 CQR54023.1 - 0.057 13.2 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 CQR54023.1 - 0.06 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 CQR54023.1 - 0.064 13.5 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 CQR54023.1 - 0.091 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DprA_WH PF17782.1 CQR54023.1 - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain HTH_28 PF13518.6 CQR54023.1 - 0.15 12.2 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 CQR54023.1 - 0.18 12.3 0.1 0.29 11.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_hydro_2_N PF02837.18 CQR54025.1 - 1.2e-21 77.3 1.4 3.4e-21 75.9 1.4 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 CQR54025.1 - 5.9e-13 48.6 0.5 6e-11 42.0 0.3 3.0 2 1 0 2 2 2 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.21 CQR54025.1 - 9.7e-09 35.9 0.0 1.7e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 CQR54025.1 - 0.011 16.3 0.9 0.074 13.6 0.5 2.3 2 0 0 2 2 2 0 Beta-galactosidase jelly roll domain ArsA_HSP20 PF17886.1 CQR54025.1 - 0.02 14.5 0.0 0.087 12.4 0.0 2.1 1 0 0 1 1 1 0 HSP20-like domain found in ArsA Glyco_hydro_43 PF04616.14 CQR54027.1 - 3.7e-47 161.0 11.5 5.4e-47 160.5 11.5 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 Big_2 PF02368.18 CQR54027.1 - 0.00031 20.6 22.4 0.039 13.8 7.6 4.2 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 2) Big_4 PF07532.11 CQR54027.1 - 0.011 15.4 0.8 0.011 15.4 0.8 3.1 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 4) Myco_19_kDa PF05481.12 CQR54027.1 - 0.54 10.5 6.2 9.4 6.6 2.3 3.3 1 1 1 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen RsmJ PF04378.13 CQR54029.1 - 0.06 12.6 0.1 0.097 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA large subunit methyltransferase D, RlmJ Peripla_BP_1 PF00532.21 CQR54031.1 - 1.1e-33 116.9 0.0 1.4e-33 116.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR54031.1 - 1.6e-31 109.9 0.0 2.9e-31 109.0 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR54031.1 - 2.3e-18 65.7 1.3 3.8e-18 65.0 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR54031.1 - 2.6e-17 63.3 0.0 9.8e-17 61.4 0.0 1.8 1 1 1 2 2 2 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR54031.1 - 0.00091 19.2 0.0 0.0025 17.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_7 PF02796.15 CQR54031.1 - 0.022 14.8 0.1 0.28 11.3 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_31 PF13560.6 CQR54031.1 - 0.076 13.4 0.0 0.2 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.7 CQR54031.1 - 0.092 12.8 0.0 5.2 7.2 0.0 2.6 1 1 1 2 2 2 0 Helix-turn-helix domain Glyco_hydro_32N PF00251.20 CQR54035.1 - 1.3e-56 192.4 1.3 1.3e-56 192.4 1.3 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR54035.1 - 4.2e-29 101.6 1.1 9.5e-29 100.4 1.1 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Laminin_G_3 PF13385.6 CQR54035.1 - 2.2e-28 99.3 3.0 2.2e-28 99.3 3.0 5.2 6 0 0 6 6 6 1 Concanavalin A-like lectin/glucanases superfamily Big_2 PF02368.18 CQR54035.1 - 5.2e-13 48.7 11.9 5.2e-13 48.7 11.9 2.7 2 0 0 2 2 1 1 Bacterial Ig-like domain (group 2) fn3 PF00041.21 CQR54035.1 - 7e-06 26.3 3.4 2.4e-05 24.6 1.0 3.0 2 1 0 2 2 2 1 Fibronectin type III domain Laminin_G_2 PF02210.24 CQR54035.1 - 0.0023 18.5 0.1 0.0065 17.1 0.1 1.8 1 0 0 1 1 1 1 Laminin G domain Pentaxin PF00354.17 CQR54035.1 - 0.004 16.8 0.5 0.011 15.5 0.0 1.9 2 0 0 2 2 2 1 Pentaxin family RGI_lyase PF18370.1 CQR54035.1 - 0.0044 17.3 0.4 0.02 15.2 0.4 2.2 1 0 0 1 1 1 1 Rhamnogalacturonan I lyases beta-sheet domain T2SS-T3SS_pil_N PF13629.6 CQR54035.1 - 0.03 14.0 1.2 0.076 12.8 1.2 1.7 1 0 0 1 1 1 0 Pilus formation protein N terminal region DUF2185 PF09951.9 CQR54035.1 - 0.079 12.8 0.3 2 8.3 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2185) DUF2550 PF10739.9 CQR54035.1 - 0.082 12.9 0.1 0.2 11.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2550) fn3_2 PF16893.5 CQR54035.1 - 0.085 13.0 1.2 0.13 12.4 0.2 1.9 2 0 0 2 2 2 0 Fibronectin type III domain Invasin_D3 PF09134.10 CQR54035.1 - 2 8.8 22.0 2.6 8.4 5.5 3.8 3 0 0 3 3 3 0 Invasin, domain 3 BPD_transp_1 PF00528.22 CQR54037.1 - 9.8e-16 58.0 12.1 9.8e-16 58.0 12.1 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF751 PF05421.11 CQR54037.1 - 0.016 15.9 3.2 0.44 11.3 0.6 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF751) MASE4 PF17158.4 CQR54037.1 - 0.43 9.8 9.6 0.019 14.2 2.9 2.0 2 0 0 2 2 2 0 Membrane-associated sensor, integral membrane domain NPCC PF08058.11 CQR54037.1 - 1.7 8.7 6.9 0.26 11.3 2.3 1.9 2 0 0 2 2 2 0 Nuclear pore complex component BPD_transp_1 PF00528.22 CQR54039.1 - 1.3e-17 64.1 8.6 1.3e-17 64.1 8.6 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component CarS-like PF01864.17 CQR54039.1 - 0.0029 17.6 3.3 0.0035 17.4 1.8 1.9 2 0 0 2 2 2 1 CDP-archaeol synthase SBP_bac_8 PF13416.6 CQR54041.1 - 1e-09 38.6 6.6 1e-09 38.6 6.6 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54041.1 - 2.6e-09 37.5 11.8 1.6e-08 34.8 11.8 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein MORN_2 PF07661.13 CQR54041.1 - 0.25 11.7 1.2 93 3.8 0.0 3.7 3 0 0 3 3 3 0 MORN repeat variant Glyco_hydro_32N PF00251.20 CQR54043.1 - 3.1e-93 312.7 1.5 3.9e-93 312.4 1.5 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain PfkB PF00294.24 CQR54043.1 - 5.1e-68 229.6 0.0 6.5e-68 229.3 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyco_hydro_32C PF08244.12 CQR54043.1 - 9.8e-32 110.1 0.0 1.5e-31 109.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Glyco_hydro_32N PF00251.20 CQR54044.1 - 1.6e-63 215.1 0.0 2.3e-63 214.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR54044.1 - 4.4e-29 101.5 0.0 7.2e-29 100.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Laminin_G_3 PF13385.6 CQR54044.1 - 4e-20 72.5 0.1 8.1e-20 71.5 0.1 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.16 CQR54044.1 - 0.0024 17.4 0.0 0.0044 16.5 0.0 1.3 1 0 0 1 1 1 1 Sialidase, N-terminal domain DUF2647 PF10839.8 CQR54044.1 - 0.19 11.8 0.0 0.43 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) Glyco_hydro_32N PF00251.20 CQR54046.1 - 6.4e-66 223.0 5.1 1.2e-65 222.0 5.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR54046.1 - 6e-31 107.6 2.6 1.9e-30 105.9 0.0 2.8 3 0 0 3 3 3 1 Glycosyl hydrolases family 32 C terminal SLH PF00395.20 CQR54046.1 - 3.9e-30 103.6 5.9 6.9e-11 42.0 0.2 4.3 4 0 0 4 4 4 3 S-layer homology domain Laminin_G_3 PF13385.6 CQR54046.1 - 2.5e-24 86.2 0.4 1.2e-23 83.9 0.4 2.3 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.16 CQR54046.1 - 0.00012 21.6 0.0 0.0003 20.3 0.0 1.7 1 0 0 1 1 1 1 Sialidase, N-terminal domain FlaG PF03646.15 CQR54046.1 - 0.0019 18.3 0.1 9.6 6.4 0.0 4.8 5 0 0 5 5 5 1 FlaG protein Flexi_CP_N PF08358.10 CQR54046.1 - 0.014 15.3 0.1 21 5.2 0.0 4.0 4 0 0 4 4 4 0 Carlavirus coat DUF4975 PF16346.5 CQR54046.1 - 0.035 14.2 1.8 0.88 9.6 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4975) Laminin_G_2 PF02210.24 CQR54046.1 - 0.067 13.8 0.0 0.29 11.7 0.0 2.1 1 0 0 1 1 1 0 Laminin G domain CBM_4_9 PF02018.17 CQR54046.1 - 0.11 12.8 22.5 0.084 13.1 1.8 6.1 5 2 0 5 5 5 0 Carbohydrate binding domain Glyco_hydro_32N PF00251.20 CQR54049.1 - 1.7e-20 73.8 6.2 5.9e-19 68.8 6.2 3.1 1 1 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain DUF4975 PF16346.5 CQR54049.1 - 1.7e-14 54.3 0.0 2.3e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4975) Glyco_hydro_32C PF08244.12 CQR54049.1 - 1.4e-10 41.4 0.0 2.1e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Glyco_hydro_43 PF04616.14 CQR54049.1 - 1.1e-07 31.5 0.5 5.7e-05 22.6 0.1 2.6 1 1 1 2 2 2 2 Glycosyl hydrolases family 43 Glyco_hydro_68 PF02435.16 CQR54049.1 - 0.031 13.2 0.0 1.2 7.9 0.0 2.3 1 1 1 2 2 2 0 Levansucrase/Invertase Thioredoxin_10 PF17991.1 CQR54049.1 - 0.12 12.9 0.0 24 5.4 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin like C-terminal domain YitT_membrane PF02588.15 CQR54053.1 - 0.0045 16.4 22.0 0.014 14.7 22.4 1.7 1 1 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BPD_transp_1 PF00528.22 CQR54055.1 - 5e-16 59.0 21.0 5e-16 59.0 21.0 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54057.1 - 2.4e-21 76.3 17.8 2.4e-21 76.3 17.8 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Glyco_hydro_65m PF03632.15 CQR54059.1 - 1.2e-128 429.3 0.8 1.8e-128 428.7 0.8 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR54059.1 - 3.7e-57 193.6 0.4 6.7e-57 192.7 0.4 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR54059.1 - 1.8e-12 46.9 0.0 6.7e-12 45.1 0.0 2.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain His_kinase PF06580.13 CQR54061.1 - 1.3e-20 73.5 1.8 1.3e-20 73.5 1.8 2.4 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR54061.1 - 1.1e-17 64.7 3.6 1.1e-17 64.7 3.6 1.9 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR54061.1 - 6e-13 48.9 0.1 1.9e-12 47.4 0.1 1.9 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR54061.1 - 1.1e-07 32.4 0.4 2.4e-07 31.2 0.4 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR54061.1 - 0.0037 17.1 0.0 0.0074 16.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BCLP PF12304.8 CQR54061.1 - 0.029 13.9 0.7 0.069 12.7 0.5 1.6 2 0 0 2 2 2 0 Beta-casein like protein Response_reg PF00072.24 CQR54063.1 - 1.6e-25 89.5 0.0 4.2e-25 88.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54063.1 - 2.2e-17 63.1 0.0 8.8e-17 61.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54063.1 - 8.8e-10 38.4 0.2 3.1e-05 23.9 0.0 3.2 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54063.1 - 5.8e-07 29.8 0.0 1.1e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 GGDEF-like domain Amino_oxidase PF01593.24 CQR54063.1 - 0.27 10.5 4.6 1.1 8.4 0.6 2.2 1 1 0 2 2 2 0 Flavin containing amine oxidoreductase SBP_bac_8 PF13416.6 CQR54065.1 - 2.6e-37 129.2 5.2 3.9e-37 128.6 5.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54065.1 - 1.6e-33 117.0 9.5 2.5e-33 116.4 9.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54065.1 - 0.00026 20.5 0.5 0.39 10.1 0.0 2.8 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein DUF3368 PF11848.8 CQR54065.1 - 0.058 13.2 0.2 17 5.3 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3368) SLH PF00395.20 CQR54067.1 - 2.5e-43 145.8 6.7 2.5e-16 59.4 0.1 4.1 3 0 0 3 3 3 3 S-layer homology domain FIVAR PF07554.13 CQR54067.1 - 3.4e-08 34.1 21.9 0.00015 22.5 3.1 4.2 3 0 0 3 3 3 2 FIVAR domain Collagen PF01391.18 CQR54067.1 - 1.7e-06 27.7 26.6 5e-06 26.2 26.6 1.9 1 1 0 1 1 1 1 Collagen triple helix repeat (20 copies) DUF1664 PF07889.12 CQR54067.1 - 0.065 13.3 2.8 4.3 7.4 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) AraC_binding PF02311.19 CQR54069.1 - 7.8e-26 90.6 0.2 1.4e-25 89.8 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_18 PF12833.7 CQR54069.1 - 7.9e-16 58.1 0.0 1.8e-15 57.0 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54069.1 - 2.1e-15 56.3 0.1 3.8e-08 33.2 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR54069.1 - 2.5e-05 23.9 0.1 3.7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 CQR54069.1 - 0.00054 19.7 0.0 0.00088 19.0 0.0 1.3 1 0 0 1 1 1 1 AraC-binding-like domain Melibiase PF02065.18 CQR54071.1 - 1.8e-167 556.6 0.0 2.2e-167 556.3 0.0 1.1 1 0 0 1 1 1 1 Melibiase Glyco_hydro_36N PF16875.5 CQR54071.1 - 2.2e-88 296.1 0.0 3.7e-88 295.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 36 N-terminal domain Glyco_hydro_36C PF16874.5 CQR54071.1 - 6.1e-21 74.7 0.2 1.8e-20 73.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolase family 36 C-terminal domain Glyco_hydro_31 PF01055.26 CQR54071.1 - 0.0011 18.2 0.0 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Melibiase_2 PF16499.5 CQR54071.1 - 0.0047 16.1 0.0 0.0078 15.4 0.0 1.2 1 0 0 1 1 1 1 Alpha galactosidase A His_kinase PF06580.13 CQR54073.1 - 5.2e-22 78.0 0.3 5.2e-22 78.0 0.3 2.5 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR54073.1 - 1.4e-10 41.4 4.0 2.8e-10 40.4 4.0 1.4 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR54073.1 - 3.3e-07 30.8 0.1 9.2e-07 29.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR54073.1 - 7.3e-06 26.3 0.0 3.4e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 CQR54073.1 - 0.012 15.5 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Mrx7 PF10906.8 CQR54073.1 - 0.056 13.7 0.1 0.056 13.7 0.1 1.8 2 0 0 2 2 2 0 MIOREX complex component 7 RSV_NS2 PF03113.14 CQR54073.1 - 0.12 12.4 0.5 0.24 11.4 0.5 1.4 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 SKIP_SNW PF02731.15 CQR54073.1 - 0.14 11.8 1.0 13 5.5 0.1 2.4 2 0 0 2 2 2 0 SKIP/SNW domain TALPID3 PF15324.6 CQR54073.1 - 0.8 7.3 2.1 1.1 6.9 2.1 1.1 1 0 0 1 1 1 0 Hedgehog signalling target AI-2E_transport PF01594.16 CQR54073.1 - 0.89 8.6 5.6 0.28 10.3 0.4 2.2 2 1 0 2 2 2 0 AI-2E family transporter Response_reg PF00072.24 CQR54074.1 - 1.1e-28 99.6 0.0 2.4e-28 98.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54074.1 - 6.2e-17 61.6 0.0 2.3e-16 59.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54074.1 - 1.4e-10 41.0 0.1 5.9e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54074.1 - 0.0026 18.0 0.1 0.0059 16.8 0.1 1.6 1 0 0 1 1 1 1 GGDEF-like domain BPD_transp_1 PF00528.22 CQR54075.1 - 2.9e-17 63.0 12.1 2.9e-17 63.0 12.1 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bac_export_2 PF01312.19 CQR54075.1 - 1.7 7.7 5.4 0.42 9.8 1.6 1.8 2 1 0 2 2 2 0 FlhB HrpN YscU SpaS Family MNHE PF01899.16 CQR54075.1 - 7.8 6.3 9.3 0.11 12.3 1.6 1.8 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit BPD_transp_1 PF00528.22 CQR54076.1 - 2.4e-17 63.3 8.7 2.4e-17 63.3 8.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR54077.1 - 2.5e-25 89.8 3.9 2.5e-25 89.8 3.9 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54077.1 - 3.7e-11 43.6 7.9 3.7e-11 43.6 7.9 2.3 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR54077.1 - 2.6 8.7 9.7 4.3 8.0 0.2 4.2 3 1 0 3 3 3 0 Domain of unknown function (DUF3502) Glyco_hydro_26 PF02156.15 CQR54078.1 - 4.9e-98 328.4 2.6 7.9e-98 327.7 2.6 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 CBM_35 PF16990.5 CQR54078.1 - 2.9e-49 166.4 8.3 6.8e-17 61.9 0.8 3.5 3 0 0 3 3 3 3 Carbohydrate binding module (family 35) SLH PF00395.20 CQR54078.1 - 1.4e-31 108.2 0.7 1.1e-12 47.8 0.1 4.3 4 0 0 4 4 4 3 S-layer homology domain DUF5010_C PF18099.1 CQR54078.1 - 4.2e-06 26.9 1.6 0.0023 18.0 0.2 2.6 2 0 0 2 2 2 2 DUF5010 C-terminal domain Cadherin-like PF12733.7 CQR54078.1 - 0.017 15.6 0.8 0.19 12.3 0.2 3.1 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain OrfB_IS605 PF01385.19 CQR54079.1 - 1.2e-29 102.9 2.1 3.3e-29 101.6 2.1 1.7 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 CQR54079.1 - 2.8e-23 81.1 1.8 7.9e-23 79.7 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 CQR54079.1 - 2.6e-22 78.5 0.4 5.6e-22 77.4 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L32e PF01655.18 CQR54079.1 - 0.01 16.3 3.9 0.026 14.9 3.9 1.7 1 0 0 1 1 1 0 Ribosomal protein L32 RuvC_1 PF18516.1 CQR54079.1 - 0.036 13.3 1.5 0.075 12.2 1.5 1.5 1 0 0 1 1 1 0 RuvC nuclease domain Glyco_hydro_26 PF02156.15 CQR54080.1 - 3.1e-64 217.3 0.2 3.7e-64 217.1 0.2 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 GerA PF03323.13 CQR54081.1 - 2.9e-176 586.5 0.0 3.3e-176 586.3 0.0 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein DUF1640 PF07798.11 CQR54081.1 - 0.24 11.4 0.0 0.42 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Spore_GerAC PF05504.11 CQR54082.1 - 6e-32 111.1 0.2 1e-31 110.3 0.2 1.4 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal Tgi2PP PF18250.1 CQR54082.1 - 0.087 13.1 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Effector immunity protein Tgi2PP Spore_permease PF03845.13 CQR54087.1 - 2.2e-48 164.7 19.8 3e-48 164.3 19.8 1.1 1 0 0 1 1 1 1 Spore germination protein Glyco_hydro_65m PF03632.15 CQR54089.1 - 5.4e-129 430.4 1.8 6.8e-129 430.1 1.8 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR54089.1 - 7.5e-47 159.9 0.0 1.3e-46 159.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR54089.1 - 5.5e-16 58.2 0.0 1.2e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain HTH_AraC PF00165.23 CQR54093.1 - 2.6e-26 91.1 0.8 2.1e-12 46.8 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR54093.1 - 3.6e-18 65.6 0.1 7.4e-18 64.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Peripla_BP_3 PF13377.6 CQR54095.1 - 1.3e-39 136.2 0.0 4.7e-39 134.4 0.0 1.9 3 0 0 3 3 3 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR54095.1 - 3e-22 79.4 0.0 4e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR54095.1 - 2.7e-19 69.8 0.0 5.6e-19 68.7 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 CQR54095.1 - 9.7e-19 66.9 0.4 2.8e-18 65.4 0.4 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_AraC PF00165.23 CQR54095.1 - 0.0026 17.8 0.0 1.4 9.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_19 PF12844.7 CQR54095.1 - 0.0027 17.7 0.0 0.0068 16.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR54095.1 - 0.0028 18.0 0.0 0.0061 16.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR54095.1 - 0.0047 17.0 0.0 0.016 15.2 0.0 2.0 1 1 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 CQR54095.1 - 0.033 14.0 0.0 3.7 7.5 0.0 2.5 1 1 1 2 2 2 0 Homeodomain-like domain DUF4135 PF13575.6 CQR54095.1 - 0.16 11.3 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) HTH_6 PF01418.17 CQR54095.1 - 0.17 11.9 1.7 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Glyco_hydro_65m PF03632.15 CQR54097.1 - 1.5e-132 442.1 1.1 1.9e-132 441.8 1.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR54097.1 - 1.2e-54 185.4 0.1 1.6e-54 184.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR54097.1 - 3.4e-14 52.5 0.0 9e-14 51.1 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain SBP_bac_1 PF01547.25 CQR54099.1 - 3.1e-44 152.2 18.0 4.3e-44 151.7 18.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54099.1 - 1.9e-40 139.4 14.0 2.6e-40 139.0 14.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54099.1 - 6e-06 25.9 2.8 0.013 15.0 0.0 2.4 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR54099.1 - 0.00021 21.1 0.1 0.032 14.0 0.0 2.5 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR54101.1 - 3e-17 63.0 23.4 3e-17 63.0 23.4 2.4 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54103.1 - 1.1e-23 84.0 14.6 1.1e-23 84.0 14.6 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bac_rhamnosid6H PF17389.2 CQR54105.1 - 2.6e-08 33.5 0.4 7.2e-08 32.1 0.4 1.6 1 1 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain GDE_C PF06202.14 CQR54105.1 - 0.0026 16.8 1.7 0.14 11.1 0.0 2.7 3 0 0 3 3 3 2 Amylo-alpha-1,6-glucosidase DUF608 PF04685.13 CQR54105.1 - 0.0083 15.3 0.1 0.015 14.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Trehalase PF01204.18 CQR54105.1 - 0.0089 14.9 0.1 0.015 14.2 0.1 1.2 1 0 0 1 1 1 1 Trehalase COBRA1 PF06209.13 CQR54105.1 - 0.011 14.7 0.0 0.016 14.1 0.0 1.1 1 0 0 1 1 1 0 Cofactor of BRCA1 (COBRA1) Glyco_hydro_63 PF03200.16 CQR54105.1 - 0.017 13.9 0.0 0.025 13.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 63 C-terminal domain HAD_2 PF13419.6 CQR54107.1 - 8.6e-23 81.3 0.0 1.2e-22 80.8 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR54107.1 - 4.7e-13 49.9 0.1 4.6e-12 46.7 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR54107.1 - 0.0024 18.3 0.0 0.0033 17.9 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54107.1 - 0.016 15.2 0.1 0.029 14.4 0.1 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like Melibiase_2 PF16499.5 CQR54109.1 - 8.9e-23 80.9 0.7 1e-13 51.1 0.0 3.1 1 1 1 2 2 2 2 Alpha galactosidase A Melibiase_C PF17801.1 CQR54109.1 - 2.6e-10 40.2 0.0 4.8e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain Malt_amylase_C PF16657.5 CQR54109.1 - 0.14 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain CE2_N PF17996.1 CQR54111.1 - 1.5e-20 73.2 0.0 3e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Carbohydrate esterase 2 N-terminal Lipase_GDSL_2 PF13472.6 CQR54111.1 - 1.1e-16 61.8 0.2 2.9e-16 60.4 0.2 1.8 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR54111.1 - 1.9e-12 47.6 0.0 3.2e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Condensation PF00668.20 CQR54115.1 - 4.7e-168 559.6 0.0 3.3e-90 302.9 0.0 2.1 2 0 0 2 2 2 2 Condensation domain AMP-binding PF00501.28 CQR54115.1 - 2.5e-98 329.5 0.0 3.9e-98 328.8 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 CQR54115.1 - 6e-11 43.2 0.0 1.3e-10 42.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.25 CQR54115.1 - 8.8e-10 38.8 0.0 2.2e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 Phosphopantetheine attachment site Phage_tail_T PF06223.12 CQR54115.1 - 0.011 16.3 0.0 0.038 14.5 0.0 2.0 1 0 0 1 1 1 0 Minor tail protein T FcoT PF10862.8 CQR54115.1 - 0.16 11.5 0.2 0.67 9.5 0.0 2.1 2 0 0 2 2 2 0 FcoT-like thioesterase domain Beta-lactamase PF00144.24 CQR54117.1 - 4.8e-73 246.3 0.1 7.5e-73 245.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase ABC_tran PF00005.27 CQR54117.1 - 1.4e-24 87.2 0.0 2.8e-24 86.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR54117.1 - 2.1e-07 30.6 2.6 0.0001 21.8 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR54117.1 - 3.8e-06 27.0 2.1 0.055 13.3 1.3 2.8 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR54117.1 - 0.0031 17.2 0.4 0.0079 15.9 0.4 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR54117.1 - 0.017 14.9 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR54117.1 - 0.046 14.1 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 CQR54117.1 - 1.8 9.0 7.0 0.62 10.5 1.6 2.7 2 1 1 3 3 3 0 AAA domain 3HCDH_N PF02737.18 CQR54120.1 - 3.5e-51 173.7 0.2 4.3e-51 173.3 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 CQR54120.1 - 4.7e-32 110.5 0.0 1.1e-31 109.3 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 CQR54120.1 - 7.3e-07 29.5 0.1 1.6e-06 28.4 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR54120.1 - 0.00053 20.5 0.2 0.00093 19.7 0.2 1.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 CQR54120.1 - 0.0019 17.8 0.0 0.0037 16.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 CQR54120.1 - 0.0026 17.1 0.1 0.0049 16.3 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 CQR54120.1 - 0.0043 16.7 0.0 0.0076 15.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 CQR54120.1 - 0.018 14.5 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Pyr_redox_2 PF07992.14 CQR54120.1 - 0.06 12.6 0.0 0.083 12.1 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 CQR54120.1 - 0.066 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase adh_short_C2 PF13561.6 CQR54120.1 - 0.07 12.7 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NAD_Gly3P_dh_N PF01210.23 CQR54120.1 - 0.077 13.0 0.0 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 CQR54120.1 - 0.12 12.7 0.1 0.86 9.9 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain DAO PF01266.24 CQR54120.1 - 0.16 11.5 0.1 0.24 10.9 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR54120.1 - 0.2 12.2 0.9 0.7 10.5 0.9 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR54120.1 - 0.24 10.6 0.0 0.32 10.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain HAD_2 PF13419.6 CQR54122.1 - 8e-08 32.6 2.3 3.5e-07 30.5 1.1 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 CQR54122.1 - 1.5e-07 31.4 4.4 0.00017 21.4 4.4 2.5 1 1 0 1 1 1 1 Acid Phosphatase NIF PF03031.18 CQR54122.1 - 0.00096 18.9 0.3 0.002 17.9 0.3 1.6 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase PF00702.26 CQR54122.1 - 0.0013 19.0 0.0 1.5 9.0 0.1 2.6 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR54122.1 - 0.0016 18.2 0.2 0.0053 16.5 0.0 1.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Acetyltransf_10 PF13673.7 CQR54122.1 - 0.0055 16.6 0.1 0.014 15.4 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4823 PF16105.5 CQR54122.1 - 0.075 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4823) HAD PF12710.7 CQR54122.1 - 0.67 10.3 2.1 26 5.1 0.6 2.9 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase PP-binding PF00550.25 CQR54125.1 - 1.3e-08 35.1 0.4 1.4e-08 34.9 0.4 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site BBS2_C PF14782.6 CQR54125.1 - 0.031 13.0 0.8 0.035 12.9 0.8 1.0 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal Methyltransf_23 PF13489.6 CQR54127.1 - 9.6e-10 38.5 0.0 1.5e-09 37.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54127.1 - 1e-09 39.0 0.0 1.8e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR54127.1 - 3.6e-09 36.6 0.0 6.7e-09 35.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR54127.1 - 3.7e-09 37.1 0.0 6.1e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR54127.1 - 3.9e-08 33.9 0.0 3.5e-07 30.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 CQR54127.1 - 0.00017 21.0 0.0 0.00026 20.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 CQR54127.1 - 0.00033 20.0 0.0 0.00044 19.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain RrnaAD PF00398.20 CQR54127.1 - 0.00081 18.5 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 CQR54127.1 - 0.0017 18.1 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 CQR54127.1 - 0.0048 16.5 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 CQR54127.1 - 0.031 13.2 0.0 0.045 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 CQR54127.1 - 0.082 12.9 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Acyl-CoA_dh_1 PF00441.24 CQR54129.1 - 2e-34 119.0 2.8 3.3e-34 118.2 2.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 CQR54129.1 - 1.1e-28 100.2 0.1 3.4e-28 98.6 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 CQR54129.1 - 6.8e-19 67.9 0.0 2.5e-18 66.0 0.0 2.1 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 CQR54129.1 - 3.1e-13 50.2 1.3 5.1e-13 49.4 1.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF2000 PF09391.10 CQR54129.1 - 0.12 12.3 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2000) AMP-binding PF00501.28 CQR54131.1 - 0 1055.0 0.0 1.1e-105 353.8 0.0 3.2 3 0 0 3 3 3 3 AMP-binding enzyme Condensation PF00668.20 CQR54131.1 - 0 1035.4 2.3 1.1e-112 377.1 0.0 3.3 3 0 0 3 3 3 3 Condensation domain ketoacyl-synt PF00109.26 CQR54131.1 - 5.7e-65 219.4 0.0 9.7e-65 218.6 0.0 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PP-binding PF00550.25 CQR54131.1 - 4.6e-50 167.9 1.8 7.8e-12 45.4 0.0 4.9 5 0 0 5 5 5 4 Phosphopantetheine attachment site Ketoacyl-synt_C PF02801.22 CQR54131.1 - 2.3e-38 130.8 0.4 5.2e-38 129.7 0.4 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Acyl_transf_1 PF00698.21 CQR54131.1 - 1.4e-32 113.5 0.0 2.3e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 Acyl transferase domain AMP-binding_C PF13193.6 CQR54131.1 - 3.4e-24 85.6 0.1 4.8e-07 30.7 0.0 4.0 3 0 0 3 3 3 3 AMP-binding enzyme C-terminal domain KAsynt_C_assoc PF16197.5 CQR54131.1 - 1.1e-13 51.7 0.0 3.1e-13 50.2 0.0 1.9 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension Thiolase_N PF00108.23 CQR54131.1 - 0.0062 15.9 0.1 0.015 14.7 0.1 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 CQR54133.1 - 1.7e-66 224.4 0.0 3e-66 223.6 0.0 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Acyl_transf_1 PF00698.21 CQR54133.1 - 1.1e-40 140.1 0.0 1.7e-40 139.5 0.0 1.2 1 0 0 1 1 1 1 Acyl transferase domain Ketoacyl-synt_C PF02801.22 CQR54133.1 - 4.1e-40 136.5 0.4 1.1e-39 135.0 0.4 1.8 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KR PF08659.10 CQR54133.1 - 9.1e-36 123.4 0.0 1.9e-35 122.4 0.0 1.6 1 0 0 1 1 1 1 KR domain KAsynt_C_assoc PF16197.5 CQR54133.1 - 3.7e-17 62.8 0.0 8.2e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR54133.1 - 1e-14 54.6 0.1 2.6e-14 53.3 0.1 1.8 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short_C2 PF13561.6 CQR54133.1 - 1.4e-05 24.8 0.0 4.3e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54133.1 - 3.4e-05 23.3 0.2 7.8e-05 22.2 0.1 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain adh_short PF00106.25 CQR54133.1 - 4.2e-05 23.1 0.4 0.00013 21.5 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase Condensation PF00668.20 CQR54135.1 - 2.1e-104 349.8 0.5 2.1e-104 349.8 0.5 1.6 2 0 0 2 2 2 1 Condensation domain ketoacyl-synt PF00109.26 CQR54135.1 - 4.5e-67 226.3 0.0 1e-66 225.1 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PS-DH PF14765.6 CQR54135.1 - 2.1e-47 161.8 0.1 3.6e-47 161.1 0.1 1.4 1 0 0 1 1 1 1 Polyketide synthase dehydratase KR PF08659.10 CQR54135.1 - 3e-43 147.8 0.1 5.5e-43 147.0 0.1 1.5 1 0 0 1 1 1 1 KR domain Ketoacyl-synt_C PF02801.22 CQR54135.1 - 3.2e-42 143.3 0.4 7.9e-42 142.0 0.4 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54135.1 - 5.5e-20 71.9 0.0 1.7e-19 70.3 0.0 1.9 2 0 0 2 2 1 1 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR54135.1 - 5.8e-15 55.4 0.0 1.8e-14 53.8 0.0 2.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short PF00106.25 CQR54135.1 - 7.7e-13 48.3 0.2 2.6e-10 40.1 0.2 2.7 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54135.1 - 4.3e-08 33.0 0.0 2.7e-07 30.4 0.0 2.3 3 0 0 3 3 3 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54135.1 - 0.0002 20.8 0.1 0.00042 19.8 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Acyl_transf_1 PF00698.21 CQR54135.1 - 0.0037 16.8 0.0 0.0072 15.9 0.0 1.4 1 0 0 1 1 1 1 Acyl transferase domain GDP_Man_Dehyd PF16363.5 CQR54135.1 - 0.0052 16.2 0.0 0.022 14.2 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 CQR54135.1 - 0.04 13.4 0.0 0.08 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family SpoVAD PF07451.11 CQR54135.1 - 0.099 11.3 1.4 3.7 6.2 0.1 2.8 3 0 0 3 3 3 0 Stage V sporulation protein AD (SpoVAD) DUF3557 PF12078.8 CQR54135.1 - 0.11 12.5 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3557) Lentivirus_VIF PF05851.11 CQR54135.1 - 0.15 11.0 0.4 0.27 10.1 0.4 1.3 1 0 0 1 1 1 0 Lentivirus virion infectivity factor (VIF) AMP-binding PF00501.28 CQR54137.1 - 4.2e-103 345.2 0.0 5.3e-103 344.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.20 CQR54137.1 - 1.4e-27 96.5 0.6 2.6e-27 95.6 0.6 1.4 1 0 0 1 1 1 1 Condensation domain PP-binding PF00550.25 CQR54137.1 - 8.3e-12 45.3 0.3 7.5e-11 42.2 0.0 2.5 2 0 0 2 2 2 1 Phosphopantetheine attachment site AMP-binding_C PF13193.6 CQR54137.1 - 1.8e-09 38.4 0.0 4.2e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 CQR54139.1 - 3.1e-191 635.5 0.0 1.4e-96 323.7 0.0 3.2 2 1 0 2 2 2 2 AMP-binding enzyme Condensation PF00668.20 CQR54139.1 - 7.1e-170 565.6 6.3 8.1e-125 417.0 0.7 2.3 2 0 0 2 2 2 2 Condensation domain ketoacyl-synt PF00109.26 CQR54139.1 - 6.4e-62 209.4 0.2 1.4e-61 208.3 0.2 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54139.1 - 2.5e-45 154.6 0.0 5.3e-45 153.5 0.0 1.5 1 0 0 1 1 1 1 KR domain Ketoacyl-synt_C PF02801.22 CQR54139.1 - 8.6e-43 145.1 0.0 2.6e-42 143.6 0.0 1.9 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain PP-binding PF00550.25 CQR54139.1 - 2.3e-39 133.6 0.1 4e-13 49.5 0.0 4.0 3 0 0 3 3 3 3 Phosphopantetheine attachment site AMP-binding_C PF13193.6 CQR54139.1 - 9.8e-20 71.3 0.0 7.9e-10 39.6 0.0 2.9 2 0 0 2 2 2 2 AMP-binding enzyme C-terminal domain KAsynt_C_assoc PF16197.5 CQR54139.1 - 8.5e-16 58.4 0.0 3.6e-15 56.4 0.0 2.2 2 0 0 2 2 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54139.1 - 1.5e-05 24.5 0.7 0.0012 18.4 0.7 2.6 1 1 0 1 1 1 1 short chain dehydrogenase Thiolase_N PF00108.23 CQR54139.1 - 0.00013 21.4 0.1 0.00035 20.0 0.1 1.6 1 0 0 1 1 1 1 Thiolase, N-terminal domain adh_short_C2 PF13561.6 CQR54139.1 - 0.0036 16.9 0.0 0.0091 15.6 0.0 1.6 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase UPF0236 PF06782.11 CQR54139.1 - 0.015 14.0 0.0 0.028 13.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0236) Transglut_core PF01841.19 CQR54141.1 - 4.9e-06 27.0 0.1 1.1e-05 25.9 0.1 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Rad4 PF03835.15 CQR54141.1 - 0.0058 16.3 0.1 0.0097 15.6 0.1 1.3 1 0 0 1 1 1 1 Rad4 transglutaminase-like domain Transglut_core3 PF13471.6 CQR54141.1 - 0.029 14.3 0.0 0.063 13.2 0.0 1.5 2 0 0 2 2 2 0 Transglutaminase-like superfamily ketoacyl-synt PF00109.26 CQR54143.1 - 9.9e-126 418.5 0.0 2.8e-63 213.9 0.0 2.9 3 0 0 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54143.1 - 1.5e-93 311.8 0.0 9.8e-54 182.0 0.0 2.7 2 0 0 2 2 2 2 KR domain Ketoacyl-synt_C PF02801.22 CQR54143.1 - 4e-81 268.8 2.7 1.5e-40 137.9 0.1 2.5 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54143.1 - 3.7e-33 114.3 0.0 1.7e-15 57.4 0.0 2.6 2 0 0 2 2 2 2 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54143.1 - 3.6e-21 75.5 0.0 1.3e-12 47.6 0.0 3.1 2 1 0 2 2 2 2 short chain dehydrogenase PP-binding PF00550.25 CQR54143.1 - 5.5e-19 68.3 0.0 3e-08 33.9 0.0 2.7 2 0 0 2 2 2 2 Phosphopantetheine attachment site adh_short_C2 PF13561.6 CQR54143.1 - 5.7e-18 65.3 0.0 8.9e-09 35.2 0.0 2.4 2 0 0 2 2 2 2 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54143.1 - 5.5e-08 32.5 0.1 0.00015 21.3 0.1 2.5 2 0 0 2 2 2 2 Thiolase, N-terminal domain Epimerase PF01370.21 CQR54143.1 - 3.8e-06 26.5 4.3 0.0085 15.6 0.0 3.8 4 0 0 4 4 4 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR54143.1 - 0.0077 15.7 0.1 1.6 8.1 0.0 2.4 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 CQR54143.1 - 0.17 10.9 0.1 1.4 7.9 0.1 2.3 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family ACP_syn_III PF08545.10 CQR54143.1 - 0.17 11.8 3.7 0.65 9.9 1.1 3.0 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMP-binding PF00501.28 CQR54145.1 - 6.4e-103 344.6 0.0 9.3e-103 344.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.20 CQR54145.1 - 3.3e-92 309.5 2.2 5.7e-92 308.8 2.2 1.4 1 0 0 1 1 1 1 Condensation domain ketoacyl-synt PF00109.26 CQR54145.1 - 1.2e-66 224.9 0.0 2.7e-66 223.8 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54145.1 - 6.7e-42 143.4 0.0 1.8e-41 142.1 0.0 1.8 2 0 0 2 2 2 1 KR domain Ketoacyl-synt_C PF02801.22 CQR54145.1 - 4.8e-39 133.0 0.1 1.5e-38 131.4 0.1 1.9 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain PP-binding PF00550.25 CQR54145.1 - 2e-28 98.5 0.0 2.7e-14 53.3 0.0 3.1 2 0 0 2 2 2 2 Phosphopantetheine attachment site KAsynt_C_assoc PF16197.5 CQR54145.1 - 1e-16 61.3 0.0 3.8e-16 59.5 0.0 2.1 2 0 0 2 2 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54145.1 - 5.8e-10 38.9 0.0 1e-06 28.4 0.0 3.1 2 1 0 2 2 2 1 short chain dehydrogenase AMP-binding_C PF13193.6 CQR54145.1 - 3.4e-08 34.3 0.0 9.7e-08 32.9 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thiolase_N PF00108.23 CQR54145.1 - 7.6e-05 22.2 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain adh_short_C2 PF13561.6 CQR54145.1 - 0.00089 18.9 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Polysacc_synt_2 PF02719.15 CQR54145.1 - 0.072 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein ketoacyl-synt PF00109.26 CQR54147.1 - 2.1e-72 243.7 0.1 4.4e-71 239.4 0.0 2.5 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Condensation PF00668.20 CQR54147.1 - 1.7e-60 205.0 1.3 1.7e-60 205.0 1.3 1.9 2 0 0 2 2 2 1 Condensation domain Ketoacyl-synt_C PF02801.22 CQR54147.1 - 5.4e-41 139.3 0.3 9.9e-41 138.5 0.3 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54147.1 - 2.5e-19 69.8 0.0 9.6e-19 67.9 0.0 2.0 2 0 0 2 2 2 1 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR54147.1 - 1e-12 48.2 0.1 2.8e-12 46.8 0.1 1.8 1 0 0 1 1 1 1 Phosphopantetheine attachment site Thiolase_N PF00108.23 CQR54147.1 - 3.7e-05 23.2 0.4 6.9e-05 22.3 0.4 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Acyl_transf_1 PF00698.21 CQR54147.1 - 9.2e-05 22.1 0.0 0.00079 19.0 0.0 2.2 2 0 0 2 2 2 1 Acyl transferase domain ACP_syn_III PF08545.10 CQR54147.1 - 0.57 10.1 3.3 4.2 7.3 1.9 2.6 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABC_tran PF00005.27 CQR54150.1 - 4.7e-21 75.7 0.1 0.00047 20.7 0.0 5.0 4 1 0 4 4 4 4 ABC transporter SMC_N PF02463.19 CQR54150.1 - 1.5e-08 34.3 0.0 0.097 12.1 0.0 3.9 2 2 1 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR54150.1 - 4.5e-06 26.3 0.2 0.053 13.3 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR54150.1 - 8e-06 25.9 0.5 0.12 12.2 0.1 2.6 2 1 0 2 2 2 2 RsgA GTPase DnaJ_CXXCXGXG PF00684.19 CQR54150.1 - 1.1e-05 25.7 4.1 0.018 15.4 0.5 3.3 3 0 0 3 3 3 2 DnaJ central domain PRK PF00485.18 CQR54150.1 - 0.0006 19.6 0.0 0.66 9.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 CQR54150.1 - 0.00073 20.0 0.0 0.64 10.4 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain Anti-TRAP PF15777.5 CQR54150.1 - 0.0009 19.2 5.6 0.025 14.5 0.6 2.9 3 0 0 3 3 3 1 Tryptophan RNA-binding attenuator protein inhibitory protein AAA_33 PF13671.6 CQR54150.1 - 0.0038 17.4 0.0 4.8 7.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 CQR54150.1 - 0.0044 17.3 0.0 2.5 8.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 CQR54150.1 - 0.0093 16.5 0.7 0.95 9.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 CQR54150.1 - 0.012 16.2 1.1 7.3 7.1 0.0 3.1 3 1 0 3 3 2 0 AAA domain MeaB PF03308.16 CQR54150.1 - 0.015 14.3 0.0 3.9 6.4 0.0 2.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA12 PF10443.9 CQR54150.1 - 0.022 13.5 0.1 1.9 7.1 0.0 2.3 2 0 0 2 2 2 0 RNA12 protein MMR_HSR1 PF01926.23 CQR54150.1 - 0.036 14.1 0.1 14 5.8 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_25 PF13481.6 CQR54150.1 - 0.044 13.3 0.0 3.4 7.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF463 PF04317.12 CQR54150.1 - 0.049 12.6 0.1 7 5.5 0.0 2.3 2 0 0 2 2 2 0 YcjX-like family, DUF463 AAA_30 PF13604.6 CQR54150.1 - 0.049 13.3 0.1 4 7.1 0.1 2.5 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 CQR54150.1 - 0.065 13.0 0.0 2.3 7.9 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase cobW PF02492.19 CQR54150.1 - 0.071 12.7 0.1 9.4 5.8 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATPase PF06745.13 CQR54150.1 - 0.18 11.1 0.6 7.6 5.8 0.1 2.6 3 0 0 3 3 3 0 KaiC AAA_15 PF13175.6 CQR54150.1 - 0.36 10.5 13.7 0.45 10.2 1.1 3.8 4 1 1 5 5 5 0 AAA ATPase domain zf_Rg PF17915.1 CQR54150.1 - 1.2 8.6 0.0 1.2 8.6 0.0 3.4 4 0 0 4 4 4 0 Reverse gyrase zinc finger AAA_21 PF13304.6 CQR54150.1 - 2.4 7.9 9.7 1.4 8.6 0.1 3.8 4 0 0 4 4 4 0 AAA domain, putative AbiEii toxin, Type IV TA system BtrH_N PF14399.6 CQR54152.1 - 0.0021 18.3 0.0 0.0056 16.9 0.0 1.7 1 1 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal PP-binding PF00550.25 CQR54154.1 - 2.2e-09 37.5 0.6 3.2e-09 37.0 0.6 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site Methyltransf_31 PF13847.6 CQR54154.1 - 0.0025 17.6 0.3 0.0028 17.5 0.3 1.1 1 0 0 1 1 1 1 Methyltransferase domain Thioesterase PF00975.20 CQR54155.1 - 1e-41 143.6 0.0 1.1e-41 143.4 0.0 1.0 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.8 CQR54155.1 - 0.0012 18.2 0.0 0.4 9.9 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR54155.1 - 0.0013 19.4 0.0 0.0049 17.5 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 CQR54155.1 - 0.0015 18.3 0.2 0.14 11.7 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold LCAT PF02450.15 CQR54155.1 - 0.0078 15.4 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase DUF900 PF05990.12 CQR54155.1 - 0.11 12.0 0.0 0.14 11.6 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Fer4_12 PF13353.6 CQR54155.1 - 0.11 12.7 0.1 9.9 6.4 0.0 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Condensation PF00668.20 CQR54157.1 - 9.7e-113 377.2 0.1 1.6e-112 376.5 0.1 1.3 1 0 0 1 1 1 1 Condensation domain AMP-binding PF00501.28 CQR54157.1 - 1.9e-70 237.6 0.0 3.2e-70 236.8 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme ketoacyl-synt PF00109.26 CQR54157.1 - 2.4e-56 191.1 0.0 4.9e-56 190.1 0.0 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PS-DH PF14765.6 CQR54157.1 - 1.5e-45 155.7 0.0 2.6e-45 155.0 0.0 1.3 1 0 0 1 1 1 1 Polyketide synthase dehydratase KR PF08659.10 CQR54157.1 - 5.8e-45 153.4 0.0 1.3e-44 152.3 0.0 1.7 1 0 0 1 1 1 1 KR domain Ketoacyl-synt_C PF02801.22 CQR54157.1 - 2e-42 143.9 2.4 3.7e-42 143.1 1.2 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain PP-binding PF00550.25 CQR54157.1 - 5.6e-29 100.3 0.1 5.5e-14 52.3 0.0 3.0 2 0 0 2 2 2 2 Phosphopantetheine attachment site KAsynt_C_assoc PF16197.5 CQR54157.1 - 1.2e-23 83.7 0.0 2.9e-23 82.5 0.0 1.8 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54157.1 - 4.7e-11 42.5 0.1 1.6e-08 34.3 0.1 3.1 1 1 0 1 1 1 1 short chain dehydrogenase AMP-binding_C PF13193.6 CQR54157.1 - 7.3e-07 30.1 0.0 3.6e-06 27.9 0.0 2.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain adh_short_C2 PF13561.6 CQR54157.1 - 5.4e-05 22.9 0.0 0.00016 21.4 0.0 1.7 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54157.1 - 0.0011 18.3 0.1 0.0029 17.0 0.1 1.7 1 0 0 1 1 1 1 Thiolase, N-terminal domain NUC130_3NT PF08158.12 CQR54157.1 - 0.049 14.0 0.1 11 6.5 0.1 2.9 2 0 0 2 2 2 0 NUC130/3NT domain UvrD_C PF13361.6 CQR54157.1 - 0.069 12.5 0.7 0.45 9.8 0.7 2.2 1 1 0 1 1 1 0 UvrD-like helicase C-terminal domain Transferase PF02458.15 CQR54157.1 - 0.085 11.5 0.0 0.81 8.3 0.0 2.1 2 0 0 2 2 2 0 Transferase family ZnuA PF01297.17 CQR54157.1 - 0.11 11.9 0.3 0.26 10.7 0.3 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic HAD_2 PF13419.6 CQR54159.1 - 7.5e-33 114.1 0.0 9e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR54159.1 - 7.5e-16 59.0 0.0 1e-14 55.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54159.1 - 1.8e-11 43.9 0.0 3e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR54159.1 - 1.1e-08 35.7 0.0 2.2e-08 34.7 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 CQR54159.1 - 0.0056 16.1 0.1 0.36 10.2 0.0 2.4 3 0 0 3 3 3 1 Putative Phosphatase ketoacyl-synt PF00109.26 CQR54161.1 - 5.7e-69 232.5 0.9 1.6e-68 231.0 0.1 2.2 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 CQR54161.1 - 1.7e-41 140.9 0.6 1e-40 138.4 0.8 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain KR PF08659.10 CQR54161.1 - 5.5e-38 130.7 0.1 1.2e-37 129.5 0.1 1.6 1 0 0 1 1 1 1 KR domain KAsynt_C_assoc PF16197.5 CQR54161.1 - 1.6e-17 64.0 0.0 3.4e-17 62.9 0.0 1.6 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54161.1 - 8.5e-08 31.9 8.4 7.8e-06 25.5 4.8 2.7 2 1 0 2 2 2 1 short chain dehydrogenase Thiolase_N PF00108.23 CQR54161.1 - 7.6e-07 28.7 0.3 1.1e-05 25.0 0.1 2.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain PP-binding PF00550.25 CQR54161.1 - 1e-06 29.0 0.0 2.7e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short_C2 PF13561.6 CQR54161.1 - 7.5e-05 22.4 5.0 0.00049 19.7 1.5 2.6 2 1 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Acyl_transf_1 PF00698.21 CQR54161.1 - 0.019 14.5 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 Acyl transferase domain ThiF PF00899.21 CQR54161.1 - 0.095 12.0 0.1 0.22 10.9 0.1 1.5 1 0 0 1 1 1 0 ThiF family ACP_syn_III PF08545.10 CQR54161.1 - 0.9 9.4 2.7 3.9 7.4 0.7 2.8 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Condensation PF00668.20 CQR54162.1 - 2.4e-106 356.1 1.9 2.4e-104 349.6 0.8 2.6 3 0 0 3 3 3 2 Condensation domain AMP-binding PF00501.28 CQR54162.1 - 4.4e-96 322.1 0.0 6.7e-96 321.5 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme ketoacyl-synt PF00109.26 CQR54162.1 - 6.8e-71 238.8 0.0 1.3e-70 237.9 0.0 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54162.1 - 1.4e-49 168.4 0.0 3e-49 167.4 0.0 1.6 1 0 0 1 1 1 1 KR domain Ketoacyl-synt_C PF02801.22 CQR54162.1 - 1.4e-40 137.9 0.1 2.9e-40 137.0 0.1 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Acyl_transf_1 PF00698.21 CQR54162.1 - 1.7e-28 100.1 0.0 3.3e-28 99.1 0.0 1.4 1 0 0 1 1 1 1 Acyl transferase domain PP-binding PF00550.25 CQR54162.1 - 1.6e-26 92.4 0.0 3.4e-12 46.5 0.0 2.8 2 0 0 2 2 2 2 Phosphopantetheine attachment site KAsynt_C_assoc PF16197.5 CQR54162.1 - 3.8e-17 62.8 0.0 1.4e-16 60.9 0.0 2.0 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54162.1 - 3.5e-09 36.4 0.3 2.4e-08 33.7 0.3 2.2 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54162.1 - 2.7e-07 30.4 0.0 7.8e-07 28.9 0.0 1.8 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54162.1 - 0.00013 21.5 0.1 0.00031 20.2 0.1 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain AMP-binding_C PF13193.6 CQR54162.1 - 0.0011 20.0 0.0 0.0031 18.5 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACP_syn_III PF08545.10 CQR54162.1 - 0.23 11.3 0.5 25 4.8 0.0 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Acyl_transf_1 PF00698.21 CQR54163.1 - 1.8e-36 126.3 0.0 2.4e-36 125.8 0.0 1.2 1 0 0 1 1 1 1 Acyl transferase domain ketoacyl-synt PF00109.26 CQR54164.1 - 1.3e-67 228.0 0.0 2.2e-67 227.3 0.0 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54164.1 - 1.7e-46 158.4 0.0 3.2e-46 157.5 0.0 1.5 1 0 0 1 1 1 1 KR domain PS-DH PF14765.6 CQR54164.1 - 9.8e-46 156.3 0.0 1.4e-45 155.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 CQR54164.1 - 3.9e-42 143.0 0.0 8.4e-42 141.9 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54164.1 - 2.1e-17 63.6 0.0 5.2e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54164.1 - 4.3e-14 52.4 0.0 1.8e-11 43.9 0.0 2.7 2 1 0 2 2 2 1 short chain dehydrogenase PP-binding PF00550.25 CQR54164.1 - 6.9e-10 39.1 0.0 1.5e-09 38.1 0.0 1.6 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short_C2 PF13561.6 CQR54164.1 - 1.6e-09 37.7 0.0 5.6e-09 35.9 0.0 1.8 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54164.1 - 2.5e-05 23.8 0.1 6.6e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 Thiolase, N-terminal domain DUF2089 PF09862.9 CQR54164.1 - 0.012 15.6 0.0 0.035 14.2 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) ketoacyl-synt PF00109.26 CQR54165.1 - 4.6e-65 219.7 0.0 8.9e-65 218.8 0.0 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54165.1 - 1.2e-50 171.9 0.0 9.4e-50 169.0 0.0 2.5 2 0 0 2 2 2 1 KR domain PS-DH PF14765.6 CQR54165.1 - 1.5e-41 142.6 0.0 2.5e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 CQR54165.1 - 1.5e-39 134.7 0.2 2.9e-39 133.7 0.2 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54165.1 - 6.5e-14 52.3 0.0 1.7e-13 51.0 0.0 1.8 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR54165.1 - 6.1e-11 42.5 0.0 1.5e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short PF00106.25 CQR54165.1 - 6.5e-10 38.8 0.0 2e-09 37.2 0.0 1.8 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54165.1 - 6.2e-07 29.2 0.0 1.6e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54165.1 - 8.6e-06 25.3 0.1 2e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Epimerase PF01370.21 CQR54165.1 - 0.078 12.4 0.0 0.25 10.8 0.0 1.8 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family AMP-binding PF00501.28 CQR54166.1 - 9.4e-97 324.3 0.0 1.5e-96 323.6 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.20 CQR54166.1 - 1.8e-94 317.0 2.1 4.8e-94 315.6 0.4 2.4 2 1 0 2 2 2 1 Condensation domain ketoacyl-synt PF00109.26 CQR54166.1 - 1.9e-68 230.8 0.0 4.2e-68 229.6 0.0 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54166.1 - 1.8e-51 174.6 0.0 4.1e-51 173.5 0.0 1.6 1 0 0 1 1 1 1 KR domain PS-DH PF14765.6 CQR54166.1 - 9.3e-46 156.4 0.0 1.5e-45 155.8 0.0 1.3 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 CQR54166.1 - 2.3e-42 143.7 0.1 9.5e-42 141.8 0.1 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain PP-binding PF00550.25 CQR54166.1 - 8.5e-29 99.7 0.2 1.2e-13 51.2 0.0 3.2 3 0 0 3 3 3 2 Phosphopantetheine attachment site KAsynt_C_assoc PF16197.5 CQR54166.1 - 7.6e-21 74.7 0.0 2.3e-20 73.1 0.0 1.9 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54166.1 - 2.5e-10 40.1 0.0 1.6e-07 31.0 0.0 2.6 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54166.1 - 1.2e-07 31.6 0.0 2.9e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase AMP-binding_C PF13193.6 CQR54166.1 - 1.1e-05 26.3 0.0 2.7e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thiolase_N PF00108.23 CQR54166.1 - 0.0085 15.5 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 CQR54167.1 - 4.3e-65 219.8 0.0 7.4e-64 215.8 0.0 2.3 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54167.1 - 5.7e-53 179.5 1.7 7.5e-53 179.1 0.6 1.8 2 0 0 2 2 2 1 KR domain PS-DH PF14765.6 CQR54167.1 - 4.7e-47 160.7 0.0 8.3e-47 159.8 0.0 1.4 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 CQR54167.1 - 7.9e-41 138.8 0.0 1.8e-40 137.6 0.0 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54167.1 - 9e-16 58.3 0.0 3.3e-15 56.5 0.0 2.1 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR54167.1 - 9e-13 48.4 0.0 4.4e-12 46.2 0.0 2.2 2 0 0 2 2 2 1 Phosphopantetheine attachment site adh_short PF00106.25 CQR54167.1 - 6e-09 35.6 2.1 4.4e-05 23.0 0.5 3.2 2 1 1 3 3 3 2 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54167.1 - 5e-06 26.3 0.1 1.4e-05 24.8 0.1 1.7 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54167.1 - 0.0013 18.2 0.0 0.0036 16.7 0.0 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain Polysacc_synt_2 PF02719.15 CQR54167.1 - 0.097 11.8 0.1 0.19 10.8 0.1 1.5 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein ketoacyl-synt PF00109.26 CQR54168.1 - 4.4e-66 223.0 0.0 1.1e-63 215.2 0.0 2.3 2 0 0 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR54168.1 - 3.4e-52 177.0 0.5 3.4e-52 177.0 0.5 2.5 3 0 0 3 3 3 1 KR domain PS-DH PF14765.6 CQR54168.1 - 6.3e-43 147.1 0.0 1.2e-42 146.2 0.0 1.5 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 CQR54168.1 - 3.9e-41 139.8 0.1 8.8e-41 138.6 0.1 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR54168.1 - 3e-13 50.2 0.0 7.8e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR54168.1 - 1.4e-08 34.4 1.3 0.00011 21.8 0.1 2.5 1 1 1 2 2 2 2 short chain dehydrogenase PP-binding PF00550.25 CQR54168.1 - 5.3e-08 33.1 0.2 1.3e-07 31.8 0.2 1.8 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short_C2 PF13561.6 CQR54168.1 - 5.9e-06 26.0 0.1 1.4e-05 24.7 0.1 1.6 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR54168.1 - 2e-05 24.1 0.1 4.4e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Polysacc_synt_2 PF02719.15 CQR54168.1 - 0.14 11.2 0.1 0.28 10.3 0.1 1.5 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein BtrH_N PF14399.6 CQR54169.1 - 0.0058 16.9 0.1 0.085 13.1 0.0 2.4 2 0 0 2 2 2 1 Butirosin biosynthesis protein H, N-terminal GFO_IDH_MocA PF01408.22 CQR54170.1 - 2.2e-28 99.5 0.0 3.2e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR54170.1 - 5.3e-08 32.9 0.0 1.5e-07 31.4 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding_2 PF13380.6 CQR54170.1 - 0.024 15.1 0.0 0.079 13.5 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain NAD_binding_3 PF03447.16 CQR54170.1 - 0.046 14.4 0.0 0.077 13.6 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ROK PF00480.20 CQR54171.1 - 2.8e-58 197.7 0.0 3.2e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 ROK family Hexokinase_2 PF03727.16 CQR54171.1 - 0.0032 16.9 0.0 0.0064 16.0 0.0 1.4 1 0 0 1 1 1 1 Hexokinase DegT_DnrJ_EryC1 PF01041.17 CQR54172.1 - 1.1e-106 357.3 0.0 1.3e-106 357.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 CQR54172.1 - 0.0055 15.3 0.0 0.0079 14.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 CQR54172.1 - 0.023 13.7 0.0 0.085 11.8 0.0 1.7 2 0 0 2 2 2 0 Aminotransferase class-V Beta_elim_lyase PF01212.21 CQR54172.1 - 0.18 11.0 0.0 1 8.6 0.0 2.0 2 0 0 2 2 2 0 Beta-eliminating lyase AMP-binding PF00501.28 CQR54173.1 - 6.9e-103 344.5 0.0 9.3e-103 344.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.20 CQR54173.1 - 1.2e-74 251.7 0.1 1.7e-74 251.2 0.1 1.2 1 0 0 1 1 1 1 Condensation domain PP-binding PF00550.25 CQR54173.1 - 1.8e-27 95.4 0.3 2e-12 47.3 0.1 2.6 2 0 0 2 2 2 2 Phosphopantetheine attachment site Thioesterase PF00975.20 CQR54173.1 - 6.1e-25 88.7 0.0 1.1e-24 87.8 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain AMP-binding_C PF13193.6 CQR54173.1 - 4.1e-08 34.1 0.0 1.8e-07 32.0 0.0 2.3 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Abhydrolase_6 PF12697.7 CQR54173.1 - 0.0025 18.4 0.1 0.0061 17.2 0.1 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF2974 PF11187.8 CQR54173.1 - 0.0084 15.7 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Condensation PF00668.20 CQR54174.1 - 0 1164.4 0.0 3.2e-112 375.5 0.0 5.1 3 2 1 4 4 4 4 Condensation domain AMP-binding PF00501.28 CQR54174.1 - 9.9e-203 673.4 0.0 5.4e-101 338.2 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme PP-binding PF00550.25 CQR54174.1 - 1e-34 118.7 0.0 4.7e-16 58.9 0.0 2.7 2 0 0 2 2 2 2 Phosphopantetheine attachment site AMP-binding_C PF13193.6 CQR54174.1 - 3e-26 92.2 4.0 3.5e-12 47.1 0.3 2.8 2 0 0 2 2 2 2 AMP-binding enzyme C-terminal domain Metal_resist PF13801.6 CQR54174.1 - 0.00026 21.2 1.6 1.7 8.9 0.1 3.8 2 0 0 2 2 2 2 Heavy-metal resistance AATase PF07247.12 CQR54174.1 - 0.0054 15.4 0.0 2.3 6.7 0.0 3.4 3 0 0 3 3 3 1 Alcohol acetyltransferase Thump_like PF18096.1 CQR54174.1 - 0.0063 16.4 0.0 7.6 6.6 0.0 2.9 2 0 0 2 2 2 2 THUMP domain-like Transferase PF02458.15 CQR54174.1 - 0.012 14.3 0.0 7.1 5.2 0.0 3.0 3 0 0 3 3 3 0 Transferase family RecX PF02631.16 CQR54174.1 - 0.02 15.3 0.0 5.4 7.5 0.0 2.5 2 0 0 2 2 2 0 RecX family PspC PF04024.12 CQR54174.1 - 0.08 12.8 0.1 20 5.1 0.0 2.9 2 0 0 2 2 2 0 PspC domain SHMT PF00464.19 CQR54174.1 - 0.18 10.3 0.7 13 4.2 0.1 2.3 2 0 0 2 2 2 0 Serine hydroxymethyltransferase Acetyltransf_3 PF13302.7 CQR54175.1 - 2.1e-24 86.7 0.0 2.6e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR54175.1 - 4.7e-10 39.7 0.1 8e-10 39.0 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR54175.1 - 5.9e-07 29.3 0.0 9.5e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR54175.1 - 9.4e-06 25.8 0.2 1.3e-05 25.4 0.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ACPS PF01648.20 CQR54176.1 - 7e-17 61.6 0.1 2.6e-16 59.8 0.1 1.8 2 0 0 2 2 2 1 4'-phosphopantetheinyl transferase superfamily NusG PF02357.19 CQR54177.1 - 2.3e-10 40.8 1.6 2.8e-10 40.6 0.5 1.7 1 1 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 CQR54177.1 - 0.00052 19.9 0.1 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 KOW motif DUF3912 PF13051.6 CQR54177.1 - 0.0076 16.5 0.1 0.018 15.3 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3912) efb-c PF12199.8 CQR54177.1 - 0.029 14.4 0.2 0.055 13.5 0.2 1.4 1 0 0 1 1 1 0 Extracellular fibrinogen binding protein C terminal PPAK PF02818.15 CQR54177.1 - 0.034 14.3 5.6 0.17 12.1 0.6 2.5 2 0 0 2 2 2 0 PPAK motif Maf PF02545.14 CQR54177.1 - 0.039 13.8 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 Maf-like protein BtrH_N PF14399.6 CQR54178.1 - 3.9e-07 30.4 0.5 7.4e-07 29.5 0.5 1.4 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal Peptidase_C39_2 PF13529.6 CQR54178.1 - 0.016 15.8 2.3 0.018 15.6 0.2 2.1 3 0 0 3 3 3 0 Peptidase_C39 like family SLH PF00395.20 CQR54179.1 - 9.3e-36 121.6 1.0 1e-11 44.7 0.0 3.8 3 0 0 3 3 3 3 S-layer homology domain Peptidase_M14 PF00246.24 CQR54179.1 - 1.7e-10 41.2 1.0 7.5e-07 29.2 0.1 2.6 1 1 1 2 2 2 2 Zinc carboxypeptidase Sigma70_r2 PF04542.14 CQR54180.1 - 7.3e-15 54.5 1.7 1.5e-14 53.5 1.7 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR54180.1 - 1.1e-13 50.6 0.7 3.1e-13 49.2 0.7 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR54180.1 - 5e-11 41.9 2.0 1.2e-10 40.7 2.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR54180.1 - 9.7e-06 25.6 6.2 3.9e-05 23.6 6.2 1.8 1 1 0 1 1 1 1 ECF sigma factor HTH_38 PF13936.6 CQR54180.1 - 3.5e-05 23.5 0.2 7.8e-05 22.4 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR54180.1 - 0.0011 18.7 0.0 0.003 17.4 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 CQR54180.1 - 0.012 15.4 0.2 0.034 13.9 0.2 1.8 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 CQR54180.1 - 0.022 14.3 0.1 0.044 13.3 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF134 PF02001.16 CQR54180.1 - 0.028 15.0 0.2 0.045 14.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 Ubiq_cyt_C_chap PF03981.12 CQR54180.1 - 0.061 13.4 8.1 0.07 13.2 6.4 1.7 1 1 1 2 2 2 0 Ubiquinol-cytochrome C chaperone DUF2089 PF09862.9 CQR54180.1 - 0.065 13.3 0.5 0.14 12.2 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) DUF445 PF04286.12 CQR54180.1 - 0.066 13.0 2.3 0.079 12.8 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) HTH_16 PF12645.7 CQR54180.1 - 0.34 11.0 2.6 0.48 10.5 0.9 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain GLTSCR1 PF15249.6 CQR54180.1 - 4.2 7.9 6.4 4 7.9 1.9 2.4 1 1 1 2 2 2 0 Conserved region of unknown function on GLTSCR protein DUF4367 PF14285.6 CQR54181.1 - 3.6e-05 24.2 3.9 0.00082 19.8 0.8 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4367) DUF2306 PF10067.9 CQR54181.1 - 0.17 12.1 0.0 0.29 11.3 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) PQQ_2 PF13360.6 CQR54183.1 - 2e-33 115.9 16.3 5.6e-17 62.1 3.0 3.3 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.21 CQR54183.1 - 3.6e-16 58.2 7.6 0.0001 22.0 0.0 6.5 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 CQR54183.1 - 9e-11 41.9 13.1 0.0046 17.4 2.7 7.3 7 1 0 7 7 7 4 PQQ-like domain SGL PF08450.12 CQR54183.1 - 0.0012 18.5 0.1 3.1 7.3 0.2 3.4 3 1 0 3 3 3 2 SMP-30/Gluconolactonase/LRE-like region DUF4075 PF13294.6 CQR54183.1 - 0.23 11.6 0.0 0.49 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) Melibiase PF02065.18 CQR54184.1 - 2.3e-165 549.7 0.0 2.8e-165 549.4 0.0 1.1 1 0 0 1 1 1 1 Melibiase Glyco_hydro_36N PF16875.5 CQR54184.1 - 1e-92 310.3 0.0 1.6e-92 309.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 36 N-terminal domain Glyco_hydro_36C PF16874.5 CQR54184.1 - 1.1e-21 77.1 0.0 2.3e-21 76.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 36 C-terminal domain Melibiase_2 PF16499.5 CQR54184.1 - 0.037 13.2 0.0 0.073 12.2 0.0 1.4 1 0 0 1 1 1 0 Alpha galactosidase A Peripla_BP_3 PF13377.6 CQR54185.1 - 8.7e-40 136.8 0.2 2.4e-39 135.3 0.0 1.8 2 1 1 3 3 2 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR54185.1 - 4e-20 71.3 1.9 1e-19 70.0 0.6 2.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR54185.1 - 3.8e-14 52.8 0.0 8.2e-14 51.7 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR54185.1 - 3.5e-07 30.1 0.0 9.5e-07 28.6 0.0 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR54185.1 - 0.00072 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 CQR54185.1 - 0.0019 17.6 0.5 0.0079 15.6 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 CQR54185.1 - 0.0033 17.3 0.8 0.025 14.5 0.0 2.9 4 0 0 4 4 4 1 MarR family HTH_38 PF13936.6 CQR54185.1 - 0.0046 16.7 0.2 0.033 13.9 0.1 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR54185.1 - 0.016 15.0 0.1 0.058 13.2 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain TetR_N PF00440.23 CQR54185.1 - 0.021 14.6 0.4 0.085 12.7 0.2 2.1 2 0 0 2 2 1 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 CQR54185.1 - 0.034 14.5 0.4 0.19 12.1 0.2 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 CQR54185.1 - 0.035 13.9 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_7 PF02796.15 CQR54185.1 - 0.036 14.2 0.0 0.073 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_26 PF13443.6 CQR54185.1 - 0.04 14.4 0.0 0.29 11.6 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_1 PF01527.20 CQR54185.1 - 0.063 13.6 0.1 14 6.1 0.0 2.4 2 0 0 2 2 2 0 Transposase HTH_28 PF13518.6 CQR54185.1 - 0.068 13.3 0.0 3 8.0 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54185.1 - 0.1 12.7 0.0 0.84 9.8 0.0 2.4 2 1 1 3 3 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_24 PF13412.6 CQR54185.1 - 0.11 12.0 0.1 0.36 10.4 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding IF2_N PF04760.15 CQR54185.1 - 0.14 12.0 0.0 5.8 6.8 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region TrmB PF01978.19 CQR54185.1 - 0.17 11.8 0.2 1.3 9.0 0.0 2.4 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.17 CQR54185.1 - 0.17 11.9 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_10 PF04967.12 CQR54185.1 - 0.17 11.7 0.0 0.75 9.6 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain His_kinase PF06580.13 CQR54186.1 - 1.8e-21 76.2 0.4 5e-21 74.8 0.4 1.8 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR54186.1 - 6.9e-13 49.0 0.2 1.3e-12 48.0 0.2 1.4 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR54186.1 - 4.1e-12 46.3 0.7 9.8e-12 45.1 0.7 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR54186.1 - 4.8e-08 33.5 0.0 8.9e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR54186.1 - 0.022 14.7 0.0 0.049 13.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR54186.1 - 0.077 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR54187.1 - 5.9e-27 94.1 0.0 3.9e-26 91.4 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54187.1 - 7e-20 71.1 0.0 1.4e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54187.1 - 2.4e-17 62.6 0.0 1.8e-10 40.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family SBP_bac_1 PF01547.25 CQR54188.1 - 1.6e-28 100.6 19.2 2.1e-28 100.2 19.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54188.1 - 3.2e-24 86.2 16.1 4.6e-24 85.7 16.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR54189.1 - 2.7e-20 72.9 6.4 2.7e-20 72.9 6.4 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54190.1 - 1.3e-22 80.5 19.2 1.3e-22 80.5 19.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MFS_1 PF07690.16 CQR54191.1 - 9.8e-32 110.2 70.9 2.7e-25 89.1 40.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR54191.1 - 2.3e-26 92.3 24.5 2.8e-26 92.0 24.5 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector LacI PF00356.21 CQR54192.1 - 1e-16 60.4 0.8 8.9e-16 57.4 0.2 2.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, lacI family TetR_N PF00440.23 CQR54192.1 - 0.031 14.1 0.1 0.085 12.7 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.6 CQR54192.1 - 0.086 12.4 0.5 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MukF_M PF17192.4 CQR54192.1 - 0.092 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 MukF middle domain DUF1611 PF07755.11 CQR54193.1 - 6.6e-10 38.6 0.0 1.7e-09 37.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain RPAP1_N PF08621.10 CQR54193.1 - 0.0075 16.0 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 RPAP1-like, N-terminal DUF1611 PF07755.11 CQR54194.1 - 4.9e-10 39.0 0.0 9e-10 38.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain CBM_20 PF00686.19 CQR54195.1 - 1.3e-16 60.3 0.0 2.3e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Starch binding domain TIG PF01833.24 CQR54195.1 - 0.00018 21.5 0.0 0.00045 20.2 0.0 1.6 1 0 0 1 1 1 1 IPT/TIG domain Malt_amylase_C PF16657.5 CQR54195.1 - 0.025 14.7 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain Alpha-amylase PF00128.24 CQR54195.1 - 0.054 13.1 0.4 0.08 12.5 0.4 1.2 1 0 0 1 1 1 0 Alpha amylase, catalytic domain DUF3954 PF13128.6 CQR54195.1 - 0.17 11.7 0.0 7.1 6.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) DUF4912 PF16258.5 CQR54196.1 - 0.026 14.7 0.0 0.037 14.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4912) Glycos_transf_1 PF00534.20 CQR54197.1 - 3e-39 134.3 0.0 5.1e-39 133.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR54197.1 - 3.3e-33 115.0 0.0 1.4e-32 113.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR54197.1 - 9.9e-30 103.8 1.0 1.8e-29 102.9 1.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR54197.1 - 1.5e-25 90.5 0.8 1.8e-24 87.0 0.4 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 CQR54197.1 - 2.4e-17 63.5 2.6 6.8e-11 42.3 0.5 2.5 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 CQR54197.1 - 2.3e-11 43.9 0.0 5e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 CQR54197.1 - 4.5e-06 26.7 0.0 8.9e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.13 CQR54197.1 - 0.0056 15.3 0.1 2.1 6.8 0.0 2.5 3 0 0 3 3 3 2 Glycogen synthase FrhB_FdhB_C PF04432.13 CQR54198.1 - 9e-26 90.6 0.0 1.7e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 CQR54198.1 - 2.4e-18 66.0 0.0 6.4e-18 64.7 0.0 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 CQR54198.1 - 8.4e-07 29.0 8.7 3.5e-06 27.0 8.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 CQR54198.1 - 6.1e-06 26.3 10.8 0.0082 16.2 0.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR54198.1 - 6.7e-06 26.0 9.7 0.0008 19.4 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 CQR54198.1 - 8.1e-06 26.7 4.9 0.039 14.9 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 CQR54198.1 - 9e-06 26.2 7.4 9e-06 26.2 7.4 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 CQR54198.1 - 1.8e-05 24.3 18.7 2.9e-05 23.7 0.7 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 CQR54198.1 - 3.9e-05 24.1 9.4 0.0047 17.4 0.4 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 CQR54198.1 - 0.0012 19.4 7.2 0.13 12.8 0.1 2.9 3 0 0 3 3 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 CQR54198.1 - 0.0037 17.3 18.0 0.019 15.0 1.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 CQR54198.1 - 0.0062 16.7 14.1 0.0084 16.3 10.6 2.8 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 CQR54198.1 - 0.023 15.4 6.7 0.5 11.2 0.3 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 CQR54198.1 - 0.042 14.3 15.7 0.27 11.7 12.0 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 CQR54198.1 - 0.12 13.2 4.8 3.9 8.4 0.3 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 CQR54198.1 - 1.5 9.0 9.4 5 7.4 0.8 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain EPSP_synthase PF00275.20 CQR54199.1 - 9.2e-90 301.3 0.0 1.1e-89 301.0 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HTH_18 PF12833.7 CQR54200.1 - 1.2e-21 76.8 0.0 2.4e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54200.1 - 1.9e-20 72.4 0.1 2.3e-10 40.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR54200.1 - 1.3e-08 35.0 1.6 2.3e-08 34.1 1.6 1.4 1 0 0 1 1 1 1 Cache domain GGDEF_2 PF17853.1 CQR54200.1 - 3.4e-06 27.3 0.0 7.8e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 GGDEF-like domain DUF3502 PF12010.8 CQR54201.1 - 0.0047 17.6 1.4 0.017 15.8 0.3 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF3502) GlcNAc-1_reg PF18440.1 CQR54201.1 - 0.11 12.7 0.2 14 6.0 0.1 3.0 2 1 1 3 3 3 0 Putative GlcNAc-1 phosphotransferase regulatory domain BPD_transp_1 PF00528.22 CQR54202.1 - 3.6e-12 46.4 12.5 3.6e-12 46.4 12.5 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54203.1 - 3.3e-14 53.0 15.7 4e-14 52.8 10.0 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Big_2 PF02368.18 CQR54204.1 - 5.2e-24 83.9 7.7 4.4e-12 45.7 2.1 3.1 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 2) Beta_helix PF13229.6 CQR54204.1 - 4e-12 46.3 24.5 7.7e-11 42.1 12.2 3.9 3 1 1 4 4 4 2 Right handed beta helix region DUF1080 PF06439.11 CQR54204.1 - 5.1e-10 39.7 0.1 0.00098 19.3 0.0 2.7 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1080) Laminin_G_3 PF13385.6 CQR54204.1 - 3.4e-05 24.1 1.1 0.096 12.8 0.2 3.0 2 0 0 2 2 2 2 Concanavalin A-like lectin/glucanases superfamily fn3 PF00041.21 CQR54204.1 - 0.0029 17.9 0.0 1.9 8.9 0.0 4.2 4 0 0 4 4 4 1 Fibronectin type III domain DUF5011 PF16403.5 CQR54204.1 - 0.016 15.4 1.5 0.07 13.3 0.6 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5011) Big_7 PF17957.1 CQR54204.1 - 0.076 13.8 12.3 0.58 11.0 1.6 5.2 3 2 1 4 4 4 0 Bacterial Ig domain Big_3_3 PF13750.6 CQR54204.1 - 0.087 12.5 0.1 6.6 6.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Acetyltransf_9 PF13527.7 CQR54205.1 - 2e-13 50.5 0.0 3.1e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR54205.1 - 1.1e-08 35.1 0.0 2.6e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR54205.1 - 6.8e-08 32.8 0.0 1.5e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR54205.1 - 3e-07 30.7 0.0 5.7e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 CQR54205.1 - 0.0008 19.3 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_15 PF17013.5 CQR54205.1 - 0.0014 18.2 0.8 0.0034 16.9 0.6 1.9 1 1 1 2 2 2 1 Putative acetyl-transferase Acetyltransf_CG PF14542.6 CQR54205.1 - 0.002 18.2 0.2 0.057 13.6 0.0 2.3 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase DUF3829 PF12889.7 CQR54206.1 - 6.7e-72 242.3 13.0 7.9e-72 242.1 13.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3829) SurA_N_2 PF13623.6 CQR54206.1 - 0.038 13.9 1.0 0.088 12.7 1.0 1.7 1 0 0 1 1 1 0 SurA N-terminal domain ABC2_membrane_3 PF12698.7 CQR54206.1 - 0.079 12.1 9.2 1.1 8.3 2.2 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein Alginate_lyase PF05426.12 CQR54207.1 - 2e-40 139.1 1.1 2.4e-40 138.8 1.1 1.1 1 0 0 1 1 1 1 Alginate lyase Glyco_hydro_88 PF07470.13 CQR54208.1 - 1.2e-45 156.1 0.0 1.4e-45 155.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 HTH_AraC PF00165.23 CQR54209.1 - 3e-19 68.6 0.2 1.3e-08 34.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR54209.1 - 1.8e-18 66.6 0.0 3.4e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR54209.1 - 4.5e-13 49.3 0.5 1.8e-12 47.4 0.3 1.9 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR54209.1 - 6.5e-08 32.2 0.4 1.6e-07 30.9 0.4 1.7 1 0 0 1 1 1 1 Cupin domain Ectoine_synth PF06339.12 CQR54209.1 - 0.1 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Ectoine synthase HTH_18 PF12833.7 CQR54210.1 - 1.2e-17 63.9 0.0 2.1e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54210.1 - 1.6e-15 56.7 0.0 2.1e-09 37.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR54210.1 - 2.3e-07 30.8 0.1 4.7e-06 26.6 0.0 2.3 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR54210.1 - 4.2e-05 23.2 0.2 8.4e-05 22.2 0.2 1.5 1 0 0 1 1 1 1 Cupin domain DUF4477 PF14780.6 CQR54210.1 - 0.079 12.6 0.7 0.14 11.7 0.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4477) GHL6 PF14871.6 CQR54211.1 - 7.4e-30 103.9 0.0 1.3e-29 103.1 0.0 1.4 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.10 CQR54211.1 - 4.4e-09 36.1 0.0 7.2e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain GHL10 PF02638.15 CQR54211.1 - 8.3e-06 25.1 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 Glyco_hydro_66 PF13199.6 CQR54211.1 - 1.9e-05 23.5 0.0 0.0058 15.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 66 Alpha_L_fucos PF01120.17 CQR54211.1 - 0.0031 17.0 0.0 0.0052 16.3 0.0 1.3 1 0 0 1 1 1 1 Alpha-L-fucosidase Beta-lactamase PF00144.24 CQR54212.1 - 5.3e-60 203.4 0.0 6.5e-60 203.1 0.0 1.0 1 0 0 1 1 1 1 Beta-lactamase ROK PF00480.20 CQR54214.1 - 1.9e-17 63.7 2.3 7.6e-15 55.2 0.4 2.6 2 1 1 3 3 3 2 ROK family HTH_36 PF13730.6 CQR54214.1 - 0.024 14.6 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 CQR54214.1 - 0.073 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mac PF12464.8 CQR54215.1 - 6.5e-15 55.1 0.3 1.1e-14 54.4 0.3 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep_2 PF14602.6 CQR54215.1 - 7.6e-13 48.0 11.4 1.3e-09 37.7 4.8 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 CQR54215.1 - 1.5e-12 46.7 14.9 3.4e-10 39.2 6.8 3.2 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Imm25 PF15564.6 CQR54215.1 - 0.066 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 25 Peripla_BP_3 PF13377.6 CQR54216.1 - 1.2e-31 110.3 0.0 3.1e-31 108.9 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR54216.1 - 2.5e-14 53.4 0.0 3.3e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR54216.1 - 1.7e-08 34.1 0.1 3e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_23 PF13384.6 CQR54216.1 - 0.00071 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 CQR54216.1 - 0.0011 18.7 0.0 0.0027 17.5 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Peripla_BP_4 PF13407.6 CQR54216.1 - 0.0058 16.2 0.0 0.013 15.1 0.0 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR54216.1 - 0.006 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 CQR54216.1 - 0.008 15.7 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR54216.1 - 0.0093 15.9 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 CQR54216.1 - 0.018 15.0 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NUMOD1 PF07453.13 CQR54216.1 - 0.019 15.2 0.0 0.051 13.8 0.0 1.8 1 0 0 1 1 1 0 NUMOD1 domain MarR_2 PF12802.7 CQR54216.1 - 0.023 14.6 0.1 0.046 13.6 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 CQR54216.1 - 0.025 14.5 0.0 0.074 13.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.20 CQR54216.1 - 0.03 14.0 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_AraC PF00165.23 CQR54216.1 - 0.042 14.0 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family TrmB PF01978.19 CQR54216.1 - 0.086 12.7 0.1 0.87 9.5 0.0 2.5 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.7 CQR54216.1 - 0.14 12.4 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 CQR54216.1 - 0.18 11.6 0.0 0.43 10.4 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain BPD_transp_1 PF00528.22 CQR54217.1 - 4.5e-12 46.1 12.4 4.5e-12 46.1 12.4 1.8 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54218.1 - 4.3e-18 65.7 8.6 4.3e-18 65.7 8.6 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR54219.1 - 4.1e-13 50.0 11.7 8.1e-13 49.0 11.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54219.1 - 1.3e-09 38.3 6.9 2.7e-09 37.2 6.9 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Glyco_hydro_32N PF00251.20 CQR54220.1 - 3.9e-97 325.5 0.4 4.5e-97 325.3 0.4 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR54220.1 - 2e-26 92.9 0.0 2.9e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal BNR PF02012.20 CQR54220.1 - 0.012 15.5 0.9 0.069 13.2 0.2 2.6 2 0 0 2 2 2 0 BNR/Asp-box repeat ROK PF00480.20 CQR54221.1 - 1.4e-70 238.1 0.0 1.7e-70 237.8 0.0 1.0 1 0 0 1 1 1 1 ROK family Glyco_hydro_32N PF00251.20 CQR54222.1 - 2.3e-69 234.3 0.1 3.5e-69 233.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR54222.1 - 5.5e-35 120.7 0.5 2.2e-34 118.7 0.2 2.2 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 C terminal DUF1080 PF06439.11 CQR54222.1 - 2.5e-23 83.1 0.0 3.5e-08 33.8 0.0 4.1 4 0 0 4 4 4 3 Domain of Unknown Function (DUF1080) RicinB_lectin_2 PF14200.6 CQR54222.1 - 2.5e-15 57.0 8.4 4.1e-09 37.0 0.2 4.7 3 2 2 6 6 6 3 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 CQR54222.1 - 7.2e-09 36.0 0.1 2.8e-08 34.1 0.0 2.2 3 0 0 3 3 3 1 Ricin-type beta-trefoil lectin domain Big_2 PF02368.18 CQR54222.1 - 0.0037 17.1 2.0 0.012 15.5 2.0 2.0 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 2) T2SS-T3SS_pil_N PF13629.6 CQR54222.1 - 0.017 14.9 0.6 0.069 12.9 0.1 2.2 2 0 0 2 2 2 0 Pilus formation protein N terminal region Laminin_G_2 PF02210.24 CQR54222.1 - 0.056 14.0 0.0 11 6.6 0.0 3.3 3 0 0 3 3 3 0 Laminin G domain BNR PF02012.20 CQR54222.1 - 5.2 7.5 5.5 5.7 7.4 0.1 3.6 3 0 0 3 3 3 0 BNR/Asp-box repeat MFS_1 PF07690.16 CQR54223.1 - 3.8e-52 177.4 47.0 7.4e-52 176.4 45.5 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily TetR_C_8 PF14278.6 CQR54224.1 - 4.5e-20 71.7 0.1 4.2e-19 68.6 0.0 2.3 2 1 0 2 2 2 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR54224.1 - 3.1e-05 23.7 0.0 7.1e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Cse1 PF08506.10 CQR54224.1 - 0.00083 18.3 0.1 0.001 18.0 0.1 1.1 1 0 0 1 1 1 1 Cse1 UPF0122 PF04297.14 CQR54224.1 - 0.047 13.9 0.7 0.36 11.1 0.3 2.1 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like RHH_7 PF16777.5 CQR54224.1 - 0.093 13.1 0.1 0.2 12.0 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator, RHH-like, CopG Epimerase PF01370.21 CQR54225.1 - 1.1e-15 57.8 0.0 1.4e-15 57.4 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR54225.1 - 3.1e-08 33.4 0.0 6e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 CQR54225.1 - 1e-07 31.2 0.0 1.3e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 CQR54225.1 - 2.5e-06 26.9 0.0 7.2e-06 25.3 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 CQR54225.1 - 0.00043 20.2 0.0 0.00068 19.6 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 CQR54225.1 - 0.016 14.4 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein ABC_tran PF00005.27 CQR54226.1 - 1e-29 103.8 0.0 1.3e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54226.1 - 5.2e-11 42.9 0.2 7e-06 26.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR54226.1 - 0.0017 18.1 0.1 0.0035 17.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR54226.1 - 0.0029 18.1 0.0 0.0036 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.8 CQR54226.1 - 0.041 11.4 0.5 0.056 11.0 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 CQR54226.1 - 0.052 13.5 0.0 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 CQR54226.1 - 0.11 12.7 0.1 0.65 10.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 CQR54226.1 - 0.14 11.9 0.0 0.21 11.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 CQR54226.1 - 0.14 11.6 0.1 0.56 9.6 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 CQR54226.1 - 0.17 12.2 0.0 4.2 7.7 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 CQR54226.1 - 0.2 11.9 0.8 3.2 8.0 0.8 2.2 1 1 0 1 1 1 0 AAA domain HTH_18 PF12833.7 CQR54227.1 - 1e-18 67.4 2.1 1.8e-18 66.6 2.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54227.1 - 1.1e-13 50.8 3.7 3.5e-08 33.3 0.3 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR54227.1 - 4.1e-08 33.2 0.4 7.3e-08 32.4 0.4 1.7 1 1 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 CQR54227.1 - 2.2e-06 27.5 0.0 3.7e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_2 PF07883.11 CQR54227.1 - 0.02 14.6 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Cupin domain rve_2 PF13333.6 CQR54227.1 - 0.15 12.2 1.6 0.21 11.8 0.2 2.0 2 0 0 2 2 2 0 Integrase core domain SBP_bac_8 PF13416.6 CQR54228.1 - 2.4e-41 142.4 4.1 3.2e-41 142.0 4.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54228.1 - 1.6e-34 120.3 6.6 2.5e-34 119.7 6.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54228.1 - 0.0058 16.1 0.0 2.8 7.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TSGA13 PF14994.6 CQR54228.1 - 0.18 11.1 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Testis-specific gene 13 protein BPD_transp_1 PF00528.22 CQR54229.1 - 7.6e-18 64.9 16.0 7.6e-18 64.9 16.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0542 PF15086.6 CQR54229.1 - 0.61 10.1 0.0 0.61 10.1 0.0 3.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0542 BPD_transp_1 PF00528.22 CQR54230.1 - 4.9e-22 78.6 15.6 4.9e-22 78.6 15.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2721 PF11026.8 CQR54230.1 - 0.055 13.4 0.1 0.055 13.4 0.1 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF2721) MTES_1575 PF18741.1 CQR54231.1 - 6.6e-05 23.0 0.0 9.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 REase_MTES_1575 HTH_24 PF13412.6 CQR54231.1 - 0.043 13.4 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 CQR54231.1 - 0.18 12.0 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Inhibitor_I53 PF11714.8 CQR54232.1 - 0.17 12.1 1.8 41 4.5 0.0 3.1 3 0 0 3 3 3 0 Thrombin inhibitor Madanin Glyoxalase_4 PF13669.6 CQR54233.1 - 2.6e-22 79.1 0.0 3.6e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 CQR54233.1 - 0.061 13.5 0.1 0.097 12.9 0.1 1.4 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily adh_short PF00106.25 CQR54234.1 - 2.5e-38 131.5 0.0 2.8e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54234.1 - 7.5e-33 114.0 0.0 8.9e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR54234.1 - 9.6e-12 45.2 0.0 1.2e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 CQR54234.1 - 2.3e-05 24.4 1.2 0.00018 21.5 1.6 1.9 2 0 0 2 2 2 1 NAD(P)H-binding Epimerase PF01370.21 CQR54234.1 - 0.00099 18.6 0.1 0.0018 17.8 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 CQR54234.1 - 0.0034 16.5 0.2 0.0055 15.8 0.2 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.10 CQR54234.1 - 0.025 14.0 0.0 0.033 13.5 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) AA_permease PF00324.21 CQR54236.1 - 3.8e-52 177.5 35.4 5.7e-52 176.9 35.4 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 CQR54236.1 - 2.8e-24 85.8 39.9 3.4e-24 85.5 39.9 1.0 1 0 0 1 1 1 1 Amino acid permease Na_Ala_symp PF01235.17 CQR54236.1 - 0.0021 17.4 9.9 0.0021 17.4 9.9 2.3 2 0 0 2 2 2 1 Sodium:alanine symporter family YtpI PF14007.6 CQR54236.1 - 3.6 7.8 11.9 21 5.3 0.0 4.0 2 1 2 4 4 4 0 YtpI-like protein LysE PF01810.18 CQR54237.1 - 2.2e-39 134.9 16.4 2.5e-39 134.7 16.4 1.0 1 0 0 1 1 1 1 LysE type translocator MFS_1 PF07690.16 CQR54238.1 - 5.5e-70 236.1 42.2 1.2e-55 188.9 28.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR54238.1 - 3.8e-14 52.1 22.7 7.6e-08 31.3 7.4 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 CQR54238.1 - 3.8e-08 32.6 31.6 5.5e-07 28.8 10.2 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 CQR54238.1 - 4.6e-06 25.3 10.2 5.2e-05 21.8 1.4 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector TRI12 PF06609.13 CQR54238.1 - 3.2e-05 22.6 5.5 3.2e-05 22.6 5.5 1.8 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 CQR54238.1 - 0.0018 16.7 19.1 0.012 13.9 0.2 4.1 2 2 2 4 4 4 4 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 CQR54238.1 - 0.0034 16.3 1.6 0.0034 16.3 1.6 2.7 1 1 2 3 3 3 2 MFS_1 like family DUF1772 PF08592.11 CQR54238.1 - 4.4 7.6 9.6 27 5.1 0.0 4.0 2 1 1 4 4 4 0 Domain of unknown function (DUF1772) Alpha-amylase PF00128.24 CQR54239.1 - 6e-82 275.9 0.2 1.6e-81 274.5 0.0 1.7 2 0 0 2 2 2 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 CQR54239.1 - 2e-33 115.1 2.5 3.4e-33 114.3 2.5 1.4 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain Malt_amylase_C PF16657.5 CQR54239.1 - 1.3e-10 41.2 0.0 2.9e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 CQR54239.1 - 1.9e-05 24.9 0.0 5.3e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) hDGE_amylase PF14701.6 CQR54239.1 - 0.00091 18.4 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain GHL6 PF14871.6 CQR54239.1 - 0.066 13.3 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Cyc-maltodext_C PF10438.9 CQR54239.1 - 0.085 13.0 0.1 0.32 11.1 0.0 2.0 3 0 0 3 3 3 0 Cyclo-malto-dextrinase C-terminal domain DUF3231 PF11553.8 CQR54240.1 - 2.9e-35 121.3 0.0 3.3e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3231) GFRP PF06399.13 CQR54240.1 - 0.17 11.8 0.0 3.3 7.7 0.0 2.2 1 1 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) BNR PF02012.20 CQR54241.1 - 7.3e-11 40.4 1.0 0.32 11.2 0.5 5.4 5 0 0 5 5 5 4 BNR/Asp-box repeat BNR_2 PF13088.6 CQR54241.1 - 2.1e-06 27.3 0.0 0.027 13.8 0.0 3.0 2 1 0 3 3 3 2 BNR repeat-like domain Sortilin-Vps10 PF15902.5 CQR54241.1 - 0.23 10.2 0.0 0.66 8.7 0.0 1.7 2 0 0 2 2 2 0 Sortilin, neurotensin receptor 3, Pribosyltran PF00156.27 CQR54244.1 - 0.14 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase domain Acetyltransf_1 PF00583.25 CQR54245.1 - 4.6e-12 46.2 0.1 9.9e-12 45.1 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR54245.1 - 5.9e-11 42.4 0.0 9.8e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR54245.1 - 2.3e-08 34.3 0.1 4.2e-08 33.5 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR54245.1 - 3.9e-06 26.8 0.0 6.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 CQR54245.1 - 0.048 14.3 0.0 0.41 11.3 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR54245.1 - 0.1 12.7 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TetR_N PF00440.23 CQR54246.1 - 7.6e-11 41.6 0.0 1.5e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_11 PF08279.12 CQR54246.1 - 2.2e-05 24.3 0.0 0.0004 20.3 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.15 CQR54246.1 - 0.00031 20.7 0.2 0.51 10.4 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 CQR54246.1 - 0.0036 17.4 0.0 0.0085 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR54246.1 - 0.0081 15.9 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain DUF3791 PF12668.7 CQR54246.1 - 0.026 14.6 0.0 0.074 13.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) HTH_IclR PF09339.10 CQR54246.1 - 0.029 14.1 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_22 PF13309.6 CQR54246.1 - 0.031 14.3 0.0 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain TetR_C_27 PF17935.1 CQR54246.1 - 0.036 14.1 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TrmB PF01978.19 CQR54246.1 - 0.051 13.5 0.0 0.48 10.3 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 CQR54246.1 - 0.13 11.8 0.0 1.6 8.3 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 CQR54246.1 - 0.16 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.6 CQR54246.1 - 0.17 11.9 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Metallophos PF00149.28 CQR54247.1 - 5.2e-06 27.1 0.0 7.3e-06 26.6 0.0 1.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase LysR_substrate PF03466.20 CQR54248.1 - 2.2e-34 118.7 0.0 2.8e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR54248.1 - 2.4e-20 72.2 0.0 4.3e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF1330 PF07045.11 CQR54249.1 - 2.2e-20 72.8 0.0 2.5e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) adh_short_C2 PF13561.6 CQR54250.1 - 2.7e-48 164.6 0.0 6.3e-48 163.4 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR54250.1 - 1e-42 145.8 0.0 1.5e-42 145.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 CQR54250.1 - 0.00012 21.6 0.2 0.0011 18.5 0.2 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 CQR54250.1 - 0.00018 21.5 0.9 0.0016 18.4 0.3 2.5 1 1 1 2 2 2 1 KR domain RmlD_sub_bind PF04321.17 CQR54250.1 - 0.0056 15.8 0.1 0.0088 15.2 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 CQR54250.1 - 0.074 12.9 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding Response_reg PF00072.24 CQR54251.1 - 2.2e-11 43.9 0.1 3e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain MFS_1 PF07690.16 CQR54252.1 - 3.9e-37 128.0 54.0 5.4e-19 68.3 23.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR54252.1 - 3.3e-14 52.6 30.4 8.9e-14 51.1 28.2 2.1 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 CQR54252.1 - 3.3e-05 22.9 27.7 0.00028 19.9 0.1 3.9 3 1 1 4 4 4 3 Sugar (and other) transporter Nuc_H_symport PF03825.16 CQR54252.1 - 0.062 12.3 27.0 0.028 13.4 23.2 1.8 1 1 1 2 2 2 0 Nucleoside H+ symporter HTH_18 PF12833.7 CQR54253.1 - 3.1e-18 65.8 0.2 6.4e-18 64.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54253.1 - 4.9e-18 64.7 0.0 1e-10 41.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR54253.1 - 2.1e-07 30.9 0.1 3.5e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 CQR54253.1 - 0.00012 21.8 0.0 0.00022 21.0 0.0 1.5 1 1 0 1 1 1 1 AraC-binding-like domain DUF3791 PF12668.7 CQR54253.1 - 0.077 13.1 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3791) SNF2_assoc PF08455.10 CQR54254.1 - 1.2e-75 254.9 0.0 2.2e-75 254.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial SNF2 helicase associated SNF2_N PF00176.23 CQR54254.1 - 4e-49 167.2 0.0 7.2e-49 166.4 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 CQR54254.1 - 2.3e-23 82.6 0.0 3.9e-20 72.2 0.0 3.2 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 CQR54254.1 - 4.5e-10 39.8 0.0 9.8e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 CQR54254.1 - 3.1e-05 23.8 0.0 6.6e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase SWIM PF04434.17 CQR54254.1 - 0.17 11.6 0.2 0.31 10.7 0.2 1.5 1 0 0 1 1 1 0 SWIM zinc finger MTES_1575 PF18741.1 CQR54255.1 - 0.0017 18.5 0.0 0.0029 17.7 0.0 1.4 1 0 0 1 1 1 1 REase_MTES_1575 HTH_17 PF12728.7 CQR54255.1 - 0.019 15.1 0.0 0.046 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.10 CQR54255.1 - 0.025 14.6 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_23 PF13384.6 CQR54255.1 - 0.029 14.2 0.1 0.069 13.0 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain RAP PF08373.10 CQR54255.1 - 0.052 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 RAP domain DUF2089 PF09862.9 CQR54255.1 - 0.085 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Ribosomal_S25 PF03297.15 CQR54255.1 - 0.12 12.5 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 S25 ribosomal protein Glyco_hydro_3_C PF01915.22 CQR54256.1 - 2e-63 214.1 0.1 3.4e-63 213.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 CQR54256.1 - 4.1e-45 154.5 0.0 6e-45 154.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 CQR54256.1 - 1.7e-26 92.1 0.0 3.7e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain CBM_6 PF03422.15 CQR54256.1 - 7.7e-18 65.0 0.0 1.7e-17 63.9 0.0 1.7 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 CQR54256.1 - 0.023 14.8 0.0 0.35 11.0 0.0 2.5 1 1 1 2 2 2 0 DUF5010 C-terminal domain FRG1 PF06229.12 CQR54256.1 - 0.2 11.4 0.3 0.43 10.3 0.0 1.6 2 0 0 2 2 2 0 FRG1-like domain SARAF PF06682.12 CQR54258.1 - 0.0023 17.6 2.8 0.0034 17.1 2.8 1.4 1 1 0 1 1 1 1 SOCE-associated regulatory factor of calcium homoeostasis HTH_18 PF12833.7 CQR54259.1 - 2.9e-20 72.3 0.7 5.9e-20 71.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54259.1 - 6.7e-19 67.5 0.1 7.8e-10 38.6 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family PocR PF10114.9 CQR54259.1 - 0.0055 16.5 0.0 0.15 11.8 0.0 2.5 2 0 0 2 2 2 1 Sensory domain found in PocR Glyco_hydro_3 PF00933.21 CQR54260.1 - 1.9e-53 181.9 0.0 3.6e-53 181.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR54260.1 - 1.8e-51 175.0 0.0 4.2e-51 173.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 CQR54260.1 - 1e-24 86.4 1.2 3.3e-24 84.8 0.1 2.2 2 0 0 2 2 2 1 Fibronectin type III-like domain CARDB PF07705.11 CQR54260.1 - 0.019 15.2 0.1 0.04 14.2 0.1 1.5 1 0 0 1 1 1 0 CARDB DUF11 PF01345.18 CQR54260.1 - 0.024 14.9 0.8 0.069 13.5 0.9 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF11 Multi_Drug_Res PF00893.19 CQR54261.1 - 4.1e-17 62.6 6.3 4.1e-17 62.6 6.3 1.4 1 1 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 CQR54261.1 - 0.021 15.0 10.1 0.026 14.7 10.1 1.2 1 0 0 1 1 1 0 EamA-like transporter family Multi_Drug_Res PF00893.19 CQR54262.1 - 3e-23 82.3 1.2 3.5e-23 82.1 1.2 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein DUF4131 PF13567.6 CQR54262.1 - 1.6 8.4 9.3 2.7 7.6 2.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Aldo_ket_red PF00248.21 CQR54263.1 - 1.1e-59 202.1 0.0 6.8e-59 199.5 0.0 1.8 1 1 0 1 1 1 1 Aldo/keto reductase family PTS_IIB PF02302.17 CQR54265.1 - 3.6e-14 53.2 1.7 4.1e-14 53.0 0.2 1.8 2 0 0 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit PTS_EIIC PF02378.18 CQR54265.1 - 4.2e-14 52.3 34.7 5.4e-14 52.0 29.8 3.1 2 1 0 2 2 2 1 Phosphotransferase system, EIIC Auxin_repressed PF05564.12 CQR54265.1 - 0.14 12.8 0.3 0.24 12.1 0.3 1.3 1 0 0 1 1 1 0 Dormancy/auxin associated protein FTR1 PF03239.14 CQR54265.1 - 2.9 7.0 7.1 3.8 6.6 0.1 2.4 2 0 0 2 2 2 0 Iron permease FTR1 family PRD PF00874.20 CQR54266.1 - 6.9e-21 74.4 0.0 2.4e-16 59.8 0.0 2.6 2 0 0 2 2 2 2 PRD domain HTH_11 PF08279.12 CQR54266.1 - 4.3e-18 65.0 0.5 2.7e-10 40.0 0.4 2.9 2 0 0 2 2 2 2 HTH domain PTS_EIIA_2 PF00359.22 CQR54266.1 - 1e-16 61.1 0.0 1.9e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Mga PF05043.13 CQR54266.1 - 1.6e-12 47.9 0.0 2e-05 25.1 0.0 2.7 1 1 1 2 2 2 2 Mga helix-turn-helix domain PTS_IIB PF02302.17 CQR54266.1 - 1.9e-05 25.3 0.0 4.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit HTH_24 PF13412.6 CQR54266.1 - 0.00026 20.5 0.0 0.0015 18.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 CQR54266.1 - 0.0013 18.7 0.1 0.12 12.4 0.0 2.7 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 CQR54266.1 - 0.0036 17.0 0.4 3 7.6 0.0 2.8 2 0 0 2 2 2 2 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.16 CQR54266.1 - 0.0055 16.2 0.2 0.032 13.7 0.2 2.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 CQR54266.1 - 0.0064 16.5 0.2 7.8 6.6 0.0 3.0 2 0 0 2 2 2 2 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR54266.1 - 0.022 14.4 1.2 0.085 12.6 0.1 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_23 PF13384.6 CQR54266.1 - 0.024 14.4 0.3 0.079 12.8 0.3 2.0 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 CQR54266.1 - 0.025 14.6 0.0 0.1 12.7 0.0 2.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_1 PF00126.27 CQR54266.1 - 0.032 14.2 0.4 21 5.2 0.0 3.4 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 CQR54266.1 - 0.088 12.6 0.1 0.86 9.4 0.3 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain PTS_EIIA_2 PF00359.22 CQR54267.1 - 2.6e-30 105.2 0.0 3.1e-30 105.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Mannitol_dh_C PF08125.13 CQR54268.1 - 1.3e-56 191.9 0.0 1.8e-56 191.4 0.0 1.2 1 0 0 1 1 1 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 CQR54268.1 - 3.1e-23 82.6 0.2 6.3e-23 81.6 0.2 1.6 1 0 0 1 1 1 1 Mannitol dehydrogenase Rossmann domain UDPG_MGDP_dh_N PF03721.14 CQR54268.1 - 1.2e-05 25.0 0.5 2.4e-05 24.0 0.5 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 CQR54268.1 - 0.0002 21.3 1.5 0.00053 19.9 0.3 2.2 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 CQR54268.1 - 0.0049 16.5 0.5 0.017 14.7 0.1 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 CQR54268.1 - 0.038 14.3 0.7 0.14 12.4 0.3 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 CQR54268.1 - 0.057 13.4 0.7 0.16 12.0 0.3 2.0 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DIOX_N PF14226.6 CQR54268.1 - 0.077 13.8 0.0 0.17 12.6 0.0 1.6 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal NAD_binding_3 PF03447.16 CQR54268.1 - 0.077 13.7 1.4 0.52 11.0 0.4 2.7 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain RskA PF10099.9 CQR54269.1 - 2.2e-15 57.4 0.2 4.1e-15 56.5 0.2 1.3 1 0 0 1 1 1 1 Anti-sigma-K factor rskA Sigma70_r2 PF04542.14 CQR54270.1 - 1.1e-16 60.3 0.8 1.9e-16 59.5 0.8 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR54270.1 - 3.4e-09 36.1 0.0 6.2e-08 32.1 0.0 2.5 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 CQR54270.1 - 3.7e-08 32.9 0.0 2.3e-07 30.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 NPCBM_assoc PF10633.9 CQR54271.1 - 6e-26 90.5 13.4 2e-17 63.2 1.5 3.8 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 CQR54271.1 - 2.5e-09 37.4 0.4 0.0057 16.9 0.1 3.6 1 1 0 3 3 3 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4832 PF16116.5 CQR54271.1 - 9.8e-09 35.4 0.9 0.096 12.5 0.0 3.3 2 1 0 3 3 3 3 Domain of unknown function (DUF4832) CARDB PF07705.11 CQR54271.1 - 1.4e-06 28.5 9.1 0.63 10.3 0.1 4.3 2 1 2 4 4 4 3 CARDB DUF3324 PF11797.8 CQR54271.1 - 8.8e-05 22.5 1.7 4.4 7.3 0.0 3.7 1 1 3 4 4 4 2 Protein of unknown function C-terminal (DUF3324) MG2 PF01835.19 CQR54271.1 - 0.00018 21.9 4.5 1.1 9.7 0.3 4.8 1 1 1 3 3 3 2 MG2 domain bMG6 PF17962.1 CQR54271.1 - 0.0013 18.9 1.3 0.31 11.2 0.1 3.2 3 0 0 3 3 3 1 Bacterial macroglobulin domain 6 Alpha_adaptinC2 PF02883.20 CQR54271.1 - 0.0026 18.0 0.8 0.22 11.8 0.0 3.4 1 1 3 4 4 4 1 Adaptin C-terminal domain DUF4981 PF16353.5 CQR54271.1 - 0.0065 16.9 3.8 1.4 9.5 0.1 4.4 1 1 2 4 4 4 1 Domain of unknown function(DUF4981) TRAP_beta PF05753.14 CQR54271.1 - 0.0068 15.8 0.2 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) DUF1735 PF08522.10 CQR54271.1 - 0.008 16.8 5.9 0.086 13.4 0.9 3.2 2 2 0 2 2 2 1 Domain of unknown function (DUF1735) fn3_5 PF06280.12 CQR54271.1 - 0.0088 16.7 5.9 0.26 12.0 1.5 3.7 1 1 1 3 3 3 1 Fn3-like domain DUF4232 PF14016.6 CQR54271.1 - 0.013 15.6 1.8 0.013 15.6 1.8 3.4 1 1 0 3 3 3 0 Protein of unknown function (DUF4232) DUF11 PF01345.18 CQR54271.1 - 0.014 15.7 15.6 0.13 12.5 2.5 4.7 1 1 1 2 2 2 0 Domain of unknown function DUF11 DUF4101 PF13355.6 CQR54271.1 - 0.032 14.7 1.2 3 8.3 0.1 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF4101) DUF4625 PF15418.6 CQR54271.1 - 0.042 14.1 0.0 8.3 6.7 0.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4625) DUF4115 PF13464.6 CQR54271.1 - 0.054 13.7 1.1 5.9 7.1 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) He_PIG PF05345.12 CQR54271.1 - 0.091 13.0 9.6 0.094 12.9 0.1 5.0 5 0 0 5 5 5 0 Putative Ig domain MOFRL PF05161.13 CQR54271.1 - 0.13 12.5 1.1 4.8 7.4 0.3 2.5 1 1 1 2 2 2 0 MOFRL family Phage_Coat_B PF05356.11 CQR54271.1 - 0.18 11.8 1.6 0.77 9.7 0.5 2.3 2 0 0 2 2 2 0 Phage Coat protein B DUF1573 PF07610.11 CQR54271.1 - 0.32 11.1 1.4 1.8 8.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1573) FlgD_ig PF13860.6 CQR54271.1 - 0.62 10.0 5.5 1.7 8.5 0.4 4.0 5 0 0 5 5 5 0 FlgD Ig-like domain BclA_C PF18573.1 CQR54271.1 - 3.4 7.6 7.7 0.32 10.9 0.5 2.8 2 1 1 3 3 3 0 BclA C-terminal domain TIG PF01833.24 CQR54271.1 - 6.7 6.9 6.7 9.2 6.4 0.2 3.3 3 1 0 3 3 3 0 IPT/TIG domain SKG6 PF08693.10 CQR54271.1 - 7.8 6.0 9.0 1.4 8.4 2.5 2.3 2 0 0 2 2 2 0 Transmembrane alpha-helix domain ABC_tran PF00005.27 CQR54272.1 - 1e-25 90.8 0.0 2.3e-25 89.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR54272.1 - 2.8e-10 40.5 1.3 7e-07 29.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 CQR54272.1 - 0.014 15.2 0.4 0.38 10.4 0.4 2.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 CQR54272.1 - 0.019 14.6 0.1 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 CQR54272.1 - 0.063 13.5 0.2 0.45 10.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR54272.1 - 0.072 13.6 0.4 0.13 12.7 0.4 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR54272.1 - 0.18 11.6 0.2 0.36 10.6 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 CQR54272.1 - 0.2 12.1 0.2 17 5.8 0.1 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_2 PF12679.7 CQR54273.1 - 9.6e-34 117.0 15.4 1.1e-33 116.8 15.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR54273.1 - 0.00013 21.5 9.1 0.00013 21.5 9.1 3.0 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR54273.1 - 0.00029 20.3 16.2 0.0059 16.0 16.1 2.4 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 CQR54273.1 - 0.00092 19.2 9.5 0.00092 19.2 9.5 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein Peptidase_M42 PF05343.14 CQR54274.1 - 1.9e-101 338.9 0.0 2.2e-101 338.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 CQR54274.1 - 1.7e-06 27.9 0.0 0.0022 17.7 0.0 2.4 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 CQR54274.1 - 4.9e-06 26.4 0.1 2e-05 24.4 0.1 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 SpoVAC_SpoVAEB PF03862.13 CQR54276.1 - 7.2e-40 135.8 12.0 8.8e-40 135.5 12.0 1.1 1 0 0 1 1 1 1 SpoVAC/SpoVAEB sporulation membrane protein DUF5455 PF17537.2 CQR54276.1 - 0.56 10.7 7.5 2.8 8.4 0.3 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5455) SpoVAD PF07451.11 CQR54277.1 - 3.9e-150 499.1 0.2 4.4e-150 498.9 0.2 1.0 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) ketoacyl-synt PF00109.26 CQR54277.1 - 0.056 13.0 0.1 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 CQR54277.1 - 0.24 11.3 2.5 15 5.5 0.2 3.0 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SpoVAC_SpoVAEB PF03862.13 CQR54278.1 - 1.6e-40 137.9 8.8 1.8e-40 137.8 8.8 1.0 1 0 0 1 1 1 1 SpoVAC/SpoVAEB sporulation membrane protein A2M PF00207.22 CQR54279.1 - 0.0032 17.3 0.0 0.0062 16.4 0.0 1.6 1 0 0 1 1 1 1 Alpha-2-macroglobulin family MCPsignal PF00015.21 CQR54280.1 - 8.6e-38 129.8 23.1 2.3e-37 128.5 10.4 3.0 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PilJ PF13675.6 CQR54280.1 - 0.022 14.8 5.0 0.19 11.7 0.5 3.1 3 1 1 4 4 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DASH_Duo1 PF08651.10 CQR54280.1 - 0.092 12.5 5.3 0.18 11.6 0.2 3.4 2 1 1 3 3 3 0 DASH complex subunit Duo1 Arfaptin PF06456.13 CQR54280.1 - 0.099 12.2 4.6 0.043 13.4 1.4 1.9 1 1 0 2 2 2 0 Arfaptin-like domain Rsbr_N PF08678.10 CQR54280.1 - 0.13 12.3 2.9 0.19 11.8 1.2 2.0 2 0 0 2 2 2 0 Rsbr N terminal DUF4473 PF14747.6 CQR54280.1 - 0.24 12.0 2.0 11 6.7 0.1 3.1 3 0 0 3 3 2 0 Domain of unknown function (DUF4473) DUF948 PF06103.11 CQR54280.1 - 0.28 11.5 19.8 2.4 8.5 0.1 5.6 3 2 3 6 6 5 0 Bacterial protein of unknown function (DUF948) Phage_connect_1 PF05135.13 CQR54280.1 - 0.55 10.8 2.5 1.5 9.4 0.2 2.6 2 1 1 3 3 3 0 Phage gp6-like head-tail connector protein TACC_C PF05010.14 CQR54280.1 - 0.61 9.8 9.2 0.069 12.9 2.5 2.4 2 1 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Wzz PF02706.15 CQR54280.1 - 0.92 9.8 9.5 0.044 14.1 2.3 2.5 2 1 1 3 3 2 0 Chain length determinant protein DUF1664 PF07889.12 CQR54280.1 - 0.96 9.5 14.7 9.6 6.3 1.2 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 CQR54280.1 - 1 8.6 11.2 0.12 11.7 2.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 CQR54280.1 - 3.3 8.1 10.2 2 8.8 0.1 4.4 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 T7SS_ESX_EspC PF10824.8 CQR54280.1 - 3.4 8.2 7.0 1.6 9.3 0.8 3.1 2 2 1 3 3 3 0 Excreted virulence factor EspC, type VII ESX diderm Laminin_II PF06009.12 CQR54280.1 - 4.8 7.2 12.0 14 5.7 1.3 3.7 2 2 2 4 4 4 0 Laminin Domain II AAA_3 PF07726.11 CQR54282.1 - 6.3e-60 200.8 0.0 9.4e-60 200.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 CQR54282.1 - 2.2e-17 62.6 0.0 3.6e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 CQR54282.1 - 4.6e-13 49.3 0.0 7.2e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 CQR54282.1 - 3e-06 27.7 0.0 1.5e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 CQR54282.1 - 2.6e-05 23.4 0.0 3.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 CQR54282.1 - 0.0002 21.1 0.0 0.015 15.0 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 CQR54282.1 - 0.0034 16.8 0.1 2.3 7.5 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 CQR54282.1 - 0.005 16.6 0.0 0.054 13.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 CQR54282.1 - 0.031 14.7 0.0 0.065 13.6 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 CQR54282.1 - 0.053 13.2 0.0 0.68 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 CQR54282.1 - 0.058 14.0 0.0 0.17 12.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 CQR54282.1 - 0.16 12.3 0.0 1.5 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF58 PF01882.18 CQR54283.1 - 5.7e-18 65.0 0.0 1.1e-17 64.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 CQR54283.1 - 0.13 13.0 0.0 0.19 12.4 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Transglut_core PF01841.19 CQR54284.1 - 2.9e-25 88.9 0.0 6.2e-25 87.8 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 CQR54284.1 - 5.3e-05 23.4 0.9 0.00021 21.5 0.9 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) RskA PF10099.9 CQR54284.1 - 0.015 15.6 2.5 0.029 14.7 2.5 1.4 1 0 0 1 1 1 0 Anti-sigma-K factor rskA HAD_2 PF13419.6 CQR54285.1 - 3.5e-11 43.5 0.1 4.1e-10 40.0 0.0 2.5 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54285.1 - 1.9e-10 40.6 0.0 3.5e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like PGP_phosphatase PF09419.10 CQR54285.1 - 1.6e-07 31.1 0.0 5.8e-07 29.3 0.0 1.7 1 1 0 1 1 1 1 Mitochondrial PGP phosphatase Hydrolase PF00702.26 CQR54285.1 - 1.7e-07 31.8 0.0 2.9e-07 31.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR54285.1 - 0.00054 19.8 0.0 0.01 15.6 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR54285.1 - 0.17 11.4 0.0 2.3 7.7 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase MMR_HSR1 PF01926.23 CQR54286.1 - 1.1e-14 54.5 0.0 5.5e-14 52.2 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 CQR54286.1 - 4.8e-13 49.4 0.0 7.8e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 CQR54286.1 - 1.8e-09 37.3 0.0 4.6e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 CQR54286.1 - 1.1e-06 28.3 0.2 0.031 13.8 0.0 2.8 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MeaB PF03308.16 CQR54286.1 - 0.00016 20.8 0.0 0.013 14.4 0.0 2.1 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 CQR54286.1 - 0.00031 21.0 0.1 0.018 15.2 0.0 2.5 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 CQR54286.1 - 0.0032 17.5 0.7 0.058 13.4 0.0 2.3 1 1 1 2 2 2 1 Dynamin family Ras PF00071.22 CQR54286.1 - 0.0074 15.9 0.0 0.51 9.9 0.0 2.2 2 0 0 2 2 2 1 Ras family TniB PF05621.11 CQR54286.1 - 0.025 14.0 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein RNA_helicase PF00910.22 CQR54286.1 - 0.048 14.1 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SRPRB PF09439.10 CQR54286.1 - 0.075 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ATPase_2 PF01637.18 CQR54286.1 - 0.092 12.6 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea PduV-EutP PF10662.9 CQR54286.1 - 0.11 12.3 0.0 20 4.9 0.0 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 CQR54286.1 - 0.12 12.1 0.1 39 3.9 0.0 3.3 3 1 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 CQR54286.1 - 0.17 12.3 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Shikimate_dh_N PF08501.11 CQR54287.1 - 1.6e-28 98.8 0.0 2.6e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 CQR54287.1 - 6.9e-15 55.3 0.1 1.1e-14 54.6 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 CQR54287.1 - 3.5e-13 49.1 0.0 6.4e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 CQR54287.1 - 0.00051 20.3 1.0 0.001 19.3 0.9 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 CQR54287.1 - 0.00079 18.8 1.2 0.0014 18.0 1.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 CQR54287.1 - 0.00095 19.7 0.5 0.0019 18.8 0.5 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 CQR54287.1 - 0.0017 18.8 0.2 0.003 18.0 0.2 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Staph_opine_DH PF10100.9 CQR54287.1 - 0.033 12.8 0.2 0.042 12.5 0.2 1.1 1 0 0 1 1 1 0 Staphylopine dehydrogenase Semialdhyde_dh PF01118.24 CQR54287.1 - 0.053 14.0 0.1 0.082 13.3 0.1 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CRS1_YhbY PF01985.21 CQR54288.1 - 8.3e-25 86.8 0.2 9.5e-25 86.6 0.2 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain CTP_transf_like PF01467.26 CQR54289.1 - 4e-28 98.4 0.0 4.6e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like HD PF01966.22 CQR54290.1 - 8.8e-16 58.2 0.0 1.2e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 CQR54290.1 - 0.002 17.6 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 HDOD domain RsfS PF02410.15 CQR54291.1 - 6.9e-28 97.0 0.2 7.9e-28 96.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal silencing factor during starvation Ribosomal_S6 PF01250.17 CQR54291.1 - 0.0031 17.8 0.0 0.0048 17.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S6 CvfB_WH PF17783.1 CQR54292.1 - 5.9e-22 77.2 0.0 9.5e-22 76.6 0.0 1.4 1 0 0 1 1 1 1 CvfB-like winged helix domain S1_2 PF13509.6 CQR54292.1 - 9.5e-19 67.2 0.2 1.2e-13 50.8 0.1 2.8 3 0 0 3 3 3 2 S1 domain MarR_2 PF12802.7 CQR54292.1 - 2.7e-06 27.2 0.0 6.1e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 MarR family S1 PF00575.23 CQR54292.1 - 3.8e-05 23.9 0.7 0.74 10.2 0.1 3.6 3 1 0 3 3 3 2 S1 RNA binding domain HTH_IclR PF09339.10 CQR54292.1 - 0.011 15.5 0.0 0.031 14.1 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 CQR54292.1 - 0.014 15.0 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 CQR54292.1 - 0.13 12.1 0.0 0.54 10.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB S1-like PF14444.6 CQR54292.1 - 0.15 12.1 0.1 6.3 6.8 0.0 2.4 2 0 0 2 2 2 0 S1-like Methyltransf_25 PF13649.6 CQR54293.1 - 3.7e-15 56.4 0.0 6.1e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR54293.1 - 1.1e-10 42.0 0.0 1.8e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR54293.1 - 1.4e-10 41.3 0.0 2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR54293.1 - 3.4e-10 40.5 0.0 5.7e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR54293.1 - 2e-07 30.9 0.0 3e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR54293.1 - 2.4e-06 27.0 0.0 2e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 CQR54293.1 - 0.00045 19.9 0.0 0.00075 19.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 CQR54293.1 - 0.02 14.3 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB MTS PF05175.14 CQR54293.1 - 0.033 13.7 0.0 0.066 12.8 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain RrnaAD PF00398.20 CQR54293.1 - 0.05 12.7 0.0 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 CQR54293.1 - 0.14 12.1 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Aldo_ket_red PF00248.21 CQR54294.1 - 1.5e-80 270.5 0.0 1.7e-80 270.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DsrD PF08679.11 CQR54294.1 - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) TetR_N PF00440.23 CQR54295.1 - 5.9e-08 32.4 0.0 1.1e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 CQR54295.1 - 0.00027 21.0 0.1 0.0012 18.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Tnp_1_2 PF13022.6 CQR54295.1 - 0.0026 17.9 0.5 0.006 16.7 0.4 1.8 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 CQR54295.1 - 0.0055 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 CQR54295.1 - 0.022 14.6 0.0 0.054 13.4 0.0 1.6 1 0 0 1 1 1 0 ECF sigma factor TetR_C_24 PF17932.1 CQR54295.1 - 0.027 14.7 0.1 0.065 13.5 0.1 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TypeIII_RM_meth PF12564.8 CQR54295.1 - 0.03 14.4 4.0 0.3 11.3 0.1 3.4 2 1 1 3 3 3 0 Type III restriction/modification enzyme methylation subunit HTH_22 PF13309.6 CQR54295.1 - 0.037 14.1 0.0 0.13 12.4 0.0 2.0 1 0 0 1 1 1 0 HTH domain GP3_package PF16677.5 CQR54295.1 - 0.083 13.0 0.4 0.2 11.8 0.3 1.6 1 1 0 1 1 1 0 DNA-packaging protein gp3 DUF2975 PF11188.8 CQR54296.1 - 2.5e-35 121.2 6.3 2.5e-35 121.2 6.3 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF2975) LHC PF00556.20 CQR54296.1 - 2 8.7 5.9 4.8 7.5 0.3 2.6 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit DUF2208 PF09973.9 CQR54296.1 - 2.5 7.7 11.5 0.33 10.5 6.4 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2208) HTH_26 PF13443.6 CQR54297.1 - 2.4e-09 37.5 3.3 0.00025 21.4 1.3 2.0 1 1 1 2 2 2 2 Cro/C1-type HTH DNA-binding domain DUF4802 PF16060.5 CQR54297.1 - 0.034 14.3 0.1 0.038 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4802) HTH_24 PF13412.6 CQR54297.1 - 0.084 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 CQR54299.1 - 2.4e-11 43.0 2.2 4.3e-11 42.2 2.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 CQR54299.1 - 2.5e-11 43.4 0.0 4.4e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR54299.1 - 1.5e-09 37.6 0.6 2.7e-09 36.7 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 CQR54299.1 - 3e-09 36.7 0.6 5.9e-09 35.7 0.6 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 CQR54299.1 - 2.2e-08 33.9 0.7 4e-08 33.1 0.7 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 CQR54299.1 - 2.6e-07 30.7 0.2 4.5e-07 30.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 CQR54299.1 - 1.7e-06 27.8 0.0 3.1e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.11 CQR54299.1 - 0.00068 19.6 1.4 0.0013 18.7 1.4 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 CQR54299.1 - 0.00084 19.1 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR54299.1 - 0.00094 19.0 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 CQR54299.1 - 0.0011 18.8 0.2 0.0028 17.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Mga PF05043.13 CQR54299.1 - 0.0017 18.9 0.3 0.0034 17.9 0.3 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_40 PF14493.6 CQR54299.1 - 0.0028 18.1 0.2 0.0058 17.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Dimerisation2 PF16864.5 CQR54299.1 - 0.0091 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain HTH_micro PF17007.5 CQR54299.1 - 0.0094 14.8 1.3 0.013 14.3 1.3 1.1 1 0 0 1 1 1 1 HTH-like HTH_28 PF13518.6 CQR54299.1 - 0.0098 16.0 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_41 PF14502.6 CQR54299.1 - 0.013 15.2 0.1 0.035 13.8 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 CQR54299.1 - 0.014 15.9 0.1 0.028 14.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 CQR54299.1 - 0.015 15.0 0.2 0.029 14.1 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR54299.1 - 0.015 15.6 0.3 0.031 14.6 0.3 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_1 PF00126.27 CQR54299.1 - 0.017 15.1 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GerE PF00196.19 CQR54299.1 - 0.029 13.9 0.2 0.054 13.0 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family GntR PF00392.21 CQR54299.1 - 0.03 14.0 0.2 0.05 13.2 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.12 CQR54299.1 - 0.03 14.5 0.5 0.059 13.5 0.5 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.17 CQR54299.1 - 0.034 14.0 0.6 0.059 13.2 0.6 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.6 CQR54299.1 - 0.039 13.9 0.9 0.09 12.8 0.9 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix LexA_DNA_bind PF01726.16 CQR54299.1 - 0.041 13.6 0.1 0.088 12.6 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_12 PF08461.10 CQR54299.1 - 0.042 13.8 0.2 0.082 12.9 0.2 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Fe_dep_repress PF01325.19 CQR54299.1 - 0.049 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain UPF0122 PF04297.14 CQR54299.1 - 0.063 13.5 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 CQR54299.1 - 0.071 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Cdc6_C PF09079.11 CQR54299.1 - 0.088 12.8 0.1 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_10 PF04967.12 CQR54299.1 - 0.1 12.4 0.5 0.25 11.2 0.1 1.8 2 0 0 2 2 1 0 HTH DNA binding domain HTH_29 PF13551.6 CQR54299.1 - 0.12 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_38 PF13936.6 CQR54299.1 - 0.13 12.0 0.2 0.6 9.9 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain SBP_bac_8 PF13416.6 CQR54300.1 - 3.3e-31 109.2 4.1 5.1e-31 108.5 4.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54300.1 - 3.9e-22 79.6 2.8 5.5e-22 79.1 2.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54300.1 - 0.014 14.8 0.1 0.047 13.1 0.1 1.8 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF5301 PF17225.3 CQR54300.1 - 0.03 14.8 0.6 0.066 13.6 0.6 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5300) LPAM_2 PF13627.6 CQR54300.1 - 5.3 7.0 6.5 9 6.3 6.5 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site BPD_transp_1 PF00528.22 CQR54301.1 - 8.5e-16 58.2 20.7 8.5e-16 58.2 20.7 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54302.1 - 9.3e-15 54.8 27.5 9.3e-14 51.6 27.5 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2621 PF11084.8 CQR54302.1 - 0.1 12.5 0.9 0.38 10.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2621) Alpha-L-AF_C PF06964.12 CQR54303.1 - 1.6e-42 145.5 0.0 3.8e-42 144.3 0.0 1.6 2 0 0 2 2 2 1 Alpha-L-arabinofuranosidase C-terminal domain Glyco_hydro_43 PF04616.14 CQR54304.1 - 1.9e-70 237.4 5.5 2.2e-70 237.3 5.5 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 DDE_Tnp_1 PF01609.21 CQR54305.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR54305.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR54305.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR54305.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain ABC2_membrane_3 PF12698.7 CQR54307.1 - 9.6e-14 51.2 21.3 6.3e-07 28.8 20.9 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR54307.1 - 2.2e-07 30.5 16.1 4.3e-07 29.6 16.1 1.4 1 0 0 1 1 1 1 ABC-2 type transporter DUF3533 PF12051.8 CQR54307.1 - 4.5e-06 25.9 8.0 0.00018 20.6 0.0 2.5 3 0 0 3 3 3 2 Protein of unknown function (DUF3533) K-box PF01486.17 CQR54307.1 - 0.23 11.7 0.2 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 K-box region HTH_3 PF01381.22 CQR54308.1 - 0.00039 20.4 0.0 0.0041 17.2 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.6 CQR54308.1 - 0.0058 17.0 0.0 0.026 14.9 0.0 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR54308.1 - 0.063 13.7 0.0 0.33 11.4 0.0 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Y1_Tnp PF01797.16 CQR54310.1 - 1.8e-38 131.4 1.3 2.1e-38 131.1 1.3 1.1 1 0 0 1 1 1 1 Transposase IS200 like DUF3888 PF13027.6 CQR54312.1 - 2.9e-21 75.7 0.0 4.2e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3888) APH PF01636.23 CQR54313.1 - 3.8e-23 82.7 0.0 4.9e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 CQR54313.1 - 6.2e-12 45.6 0.1 1e-11 44.8 0.1 1.4 1 1 0 1 1 1 1 Choline/ethanolamine kinase EcKinase PF02958.20 CQR54313.1 - 0.00013 21.4 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase DUF5317 PF17248.2 CQR54313.1 - 0.096 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5317) Y1_Tnp PF01797.16 CQR54314.1 - 1.8e-38 131.4 1.3 2.1e-38 131.1 1.3 1.1 1 0 0 1 1 1 1 Transposase IS200 like Erythro_esteras PF05139.14 CQR54316.1 - 7.7e-64 216.7 0.0 3.5e-63 214.5 0.0 1.8 2 0 0 2 2 2 1 Erythromycin esterase ATR13 PF16829.5 CQR54316.1 - 0.09 13.1 0.1 0.37 11.2 0.1 2.1 1 0 0 1 1 1 0 Avirulence protein ATR13, RxLR effector Lipase_GDSL_2 PF13472.6 CQR54317.1 - 2.7e-25 89.8 0.2 3.2e-25 89.6 0.2 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR54317.1 - 3.5e-08 33.7 0.0 5.1e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase PriCT_2 PF08707.11 CQR54317.1 - 0.17 12.3 1.9 0.86 10.0 0.3 2.6 2 1 1 3 3 3 0 Primase C terminal 2 (PriCT-2) His_kinase PF06580.13 CQR54318.1 - 2.3e-20 72.7 0.1 2.3e-20 72.7 0.1 2.5 3 0 0 3 3 3 1 Histidine kinase HAMP PF00672.25 CQR54318.1 - 2e-09 37.7 0.0 6.4e-09 36.1 0.0 2.0 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR54318.1 - 2.9e-09 37.1 2.7 4.3e-09 36.5 2.7 1.3 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR54318.1 - 1.7e-06 28.5 0.0 3.6e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR54318.1 - 0.00028 20.7 0.0 0.00066 19.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR54318.1 - 0.0086 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Fungal_TACC PF12709.7 CQR54318.1 - 0.016 15.6 0.6 0.04 14.3 0.6 1.6 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins Bac_rhamnosid_N PF08531.10 CQR54318.1 - 0.22 11.3 1.4 1.2 8.9 0.9 2.4 1 1 1 2 2 2 0 Alpha-L-rhamnosidase N-terminal domain Reticulon PF02453.17 CQR54318.1 - 0.35 10.8 4.1 0.55 10.2 0.7 2.2 2 0 0 2 2 2 0 Reticulon Response_reg PF00072.24 CQR54319.1 - 3.8e-27 94.7 0.1 9e-27 93.5 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR54319.1 - 4.6e-22 77.6 0.5 5.2e-10 39.2 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR54319.1 - 6.1e-20 71.3 0.0 1.7e-19 69.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR54319.1 - 3.5e-14 53.0 0.1 1.3e-13 51.2 0.0 2.0 2 0 0 2 2 2 1 GGDEF-like domain DUF751 PF05421.11 CQR54319.1 - 0.088 13.5 0.1 0.26 12.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF751) HTH_7 PF02796.15 CQR54319.1 - 0.18 11.9 0.3 0.54 10.4 0.3 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase SBP_bac_1 PF01547.25 CQR54320.1 - 6.6e-41 141.3 8.2 6.6e-41 141.3 8.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54320.1 - 1.8e-35 123.2 5.5 2.8e-35 122.5 5.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54320.1 - 9.3e-09 35.0 0.1 6.5e-05 22.5 0.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR54320.1 - 0.064 13.0 0.1 0.13 12.0 0.1 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF4969 PF16339.5 CQR54320.1 - 0.073 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) BPD_transp_1 PF00528.22 CQR54321.1 - 4.6e-18 65.6 15.0 4.6e-18 65.6 15.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5392 PF17370.2 CQR54321.1 - 4.4 7.4 5.4 5 7.2 0.1 2.7 2 1 0 3 3 3 0 Family of unknown function (DUF5392) BPD_transp_1 PF00528.22 CQR54322.1 - 1.2e-12 48.0 12.9 1.2e-12 48.0 12.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_130 PF04041.13 CQR54323.1 - 1.2e-39 136.2 0.0 1.8e-39 135.6 0.0 1.3 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase DUF1861 PF08950.10 CQR54323.1 - 0.12 11.6 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) Glyco_hydro_106 PF17132.4 CQR54324.1 - 1.6e-24 86.2 0.3 2.2e-15 56.0 0.0 2.4 2 1 0 2 2 2 2 alpha-L-rhamnosidase Glyco_hydro_42M PF08532.10 CQR54324.1 - 0.071 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain PGA_cap PF09587.10 CQR54325.1 - 7.9e-72 241.8 0.0 9.8e-72 241.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap His_kinase PF06580.13 CQR54326.1 - 8.3e-22 77.3 0.6 1.8e-21 76.2 0.6 1.6 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR54326.1 - 6.5e-11 42.5 0.2 9.2e-11 42.0 0.2 1.2 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR54326.1 - 3.4e-10 40.1 0.0 1.1e-09 38.5 0.0 1.9 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR54326.1 - 4.8e-07 30.3 0.0 1e-06 29.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR54327.1 - 3.5e-25 88.3 0.1 7.2e-25 87.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54327.1 - 2.6e-21 75.7 0.6 8.6e-21 74.0 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54327.1 - 6.3e-19 67.6 0.3 3.1e-09 36.7 0.0 2.9 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54327.1 - 1.7e-13 50.8 0.9 3.2e-12 46.7 0.1 2.8 3 0 0 3 3 3 1 GGDEF-like domain KorB PF08535.10 CQR54327.1 - 0.067 13.2 0.0 0.3 11.1 0.0 2.1 2 0 0 2 2 2 0 KorB domain SBP_bac_1 PF01547.25 CQR54328.1 - 7.3e-34 118.1 5.5 7.3e-34 118.1 5.5 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54328.1 - 1.9e-30 106.7 4.7 3.1e-30 105.9 4.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54328.1 - 2e-06 27.4 0.0 0.04 13.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein HSDR_N_2 PF13588.6 CQR54328.1 - 0.028 14.4 0.1 0.046 13.7 0.1 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) DASH_Dad4 PF08650.10 CQR54328.1 - 0.075 13.0 0.8 0.22 11.5 0.8 1.7 1 0 0 1 1 1 0 DASH complex subunit Dad4 BPD_transp_1 PF00528.22 CQR54329.1 - 1.3e-18 67.4 14.4 1.3e-18 67.4 14.4 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54330.1 - 3.3e-10 40.0 13.1 3.3e-10 40.0 13.1 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Glyco_hydro_130 PF04041.13 CQR54331.1 - 4.4e-42 144.2 0.0 6.8e-42 143.5 0.0 1.2 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase DUF1861 PF08950.10 CQR54331.1 - 0.041 13.1 0.1 0.073 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) FAD_oxidored PF12831.7 CQR54332.1 - 3.7e-110 369.3 0.0 4.3e-110 369.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR54332.1 - 3.5e-09 36.3 2.7 1.8e-07 30.6 2.4 2.3 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 CQR54332.1 - 3.2e-05 23.2 5.1 0.00032 19.9 4.5 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 CQR54332.1 - 4e-05 23.0 1.8 0.049 12.9 1.7 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 CQR54332.1 - 0.00018 20.9 2.3 0.00045 19.5 0.7 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR54332.1 - 0.00029 20.5 4.8 0.018 14.7 6.4 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR54332.1 - 0.00036 19.4 4.0 0.00057 18.7 4.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 CQR54332.1 - 0.0015 17.8 0.6 0.036 13.3 0.3 2.3 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 CQR54332.1 - 0.0039 17.4 3.9 0.0039 17.4 3.9 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 CQR54332.1 - 0.039 13.2 1.8 0.064 12.5 1.8 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 CQR54332.1 - 0.13 11.5 3.9 0.22 10.7 3.9 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR54332.1 - 0.25 11.9 2.8 0.68 10.5 2.2 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lipase_GDSL_3 PF14606.6 CQR54333.1 - 2.3e-22 80.0 0.0 3e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.6 CQR54333.1 - 1.5e-15 58.1 0.0 2.3e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family ROK PF00480.20 CQR54336.1 - 4.3e-36 124.9 0.0 5.2e-36 124.6 0.0 1.1 1 0 0 1 1 1 1 ROK family MarR PF01047.22 CQR54336.1 - 0.022 14.7 0.3 0.047 13.6 0.3 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 CQR54336.1 - 0.029 14.3 0.3 0.17 11.8 0.1 2.3 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 CQR54336.1 - 0.033 13.8 0.2 0.096 12.3 0.2 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 CQR54336.1 - 0.13 12.3 0.1 5.5 7.2 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase ABC2_membrane_2 PF12679.7 CQR54337.1 - 1.4e-12 47.6 12.2 1.9e-12 47.1 12.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR54337.1 - 8.6e-06 25.1 15.8 8.6e-06 25.1 15.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR54337.1 - 0.00026 20.5 13.1 0.00026 20.5 13.1 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 CQR54337.1 - 0.055 13.0 14.1 0.033 13.7 9.2 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR54337.1 - 2.7 7.9 14.4 0.36 10.8 9.4 2.2 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 CQR54338.1 - 6.7e-26 91.4 0.0 1.2e-25 90.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54338.1 - 8.1e-17 62.0 0.3 4e-13 49.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 CQR54338.1 - 0.0025 18.5 0.1 0.007 17.1 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 CQR54338.1 - 0.0061 17.1 0.9 0.011 16.3 0.3 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR54338.1 - 0.0071 16.1 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR54338.1 - 0.0099 15.6 0.0 3.6 7.2 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 CQR54338.1 - 0.019 14.9 0.0 0.044 13.7 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 CQR54338.1 - 0.076 13.4 0.1 0.27 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 CQR54338.1 - 0.085 12.6 0.5 0.27 10.9 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 CQR54338.1 - 0.18 12.2 0.9 2 8.8 0.1 2.4 2 1 0 2 2 2 0 AAA domain TetR_N PF00440.23 CQR54339.1 - 1.3e-11 44.1 0.1 3.2e-11 42.8 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family LacI PF00356.21 CQR54339.1 - 0.0088 15.8 0.0 0.039 13.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_40 PF14493.6 CQR54339.1 - 0.0088 16.5 1.8 0.051 14.0 0.4 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 CQR54339.1 - 0.0098 16.0 1.0 0.0098 16.0 1.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_7 PF02796.15 CQR54339.1 - 0.017 15.2 0.9 0.34 11.0 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase TetR_C_17 PF17922.1 CQR54339.1 - 0.025 14.7 1.4 0.028 14.5 0.1 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 CQR54339.1 - 0.049 13.9 0.0 0.084 13.2 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_23 PF13384.6 CQR54339.1 - 0.058 13.2 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_3 PF01381.22 CQR54339.1 - 0.11 12.5 0.8 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix CBS PF00571.28 CQR54340.1 - 1.2e-16 60.8 1.7 5.7e-09 36.3 0.1 2.2 2 0 0 2 2 2 2 CBS domain DUF2977 PF11192.8 CQR54340.1 - 0.015 15.4 0.1 0.028 14.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) A_thal_3526 PF09713.10 CQR54340.1 - 0.13 12.5 0.0 2 8.7 0.0 2.4 1 1 0 1 1 1 0 Plant protein 1589 of unknown function (A_thal_3526) MarR PF01047.22 CQR54341.1 - 3.9e-14 52.3 0.0 9e-14 51.2 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR54341.1 - 1e-09 38.1 0.0 2.2e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR54341.1 - 5.5e-05 22.6 0.0 0.00013 21.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 CQR54341.1 - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.6 CQR54341.1 - 0.00027 21.1 0.0 0.00041 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 CQR54341.1 - 0.00083 19.8 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 CQR54341.1 - 0.0038 17.1 0.0 0.007 16.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 CQR54341.1 - 0.016 15.0 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 CQR54341.1 - 0.025 14.4 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.19 CQR54341.1 - 0.033 14.4 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.10 CQR54341.1 - 0.055 13.5 0.0 0.38 10.9 0.0 2.2 1 1 2 3 3 3 0 FeoC like transcriptional regulator HTH_36 PF13730.6 CQR54341.1 - 0.079 12.9 0.0 0.19 11.7 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 CQR54342.1 - 1.8e-11 43.7 0.1 3e-11 43.0 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR54342.1 - 2.7e-08 33.6 0.2 5.5e-08 32.6 0.2 1.6 1 1 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 CQR54342.1 - 1.1e-06 28.7 0.1 2.2e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 CQR54342.1 - 1.3e-06 28.8 0.2 2.2e-06 28.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 CQR54342.1 - 0.00059 19.6 0.0 0.002 17.9 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 CQR54342.1 - 0.00068 19.1 0.2 0.0019 17.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 CQR54342.1 - 0.00073 20.2 0.0 0.0014 19.3 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.19 CQR54342.1 - 0.002 18.0 0.1 0.0045 16.8 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB Cullin_Nedd8 PF10557.9 CQR54342.1 - 0.0061 16.6 0.0 0.019 15.0 0.0 1.8 2 0 0 2 2 1 1 Cullin protein neddylation domain HTH_40 PF14493.6 CQR54342.1 - 0.029 14.8 0.1 0.25 11.8 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 CQR54342.1 - 0.036 13.9 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 CQR54342.1 - 0.041 13.6 0.4 0.089 12.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) TnsD PF15978.5 CQR54342.1 - 0.047 12.7 0.1 0.051 12.6 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_11 PF08279.12 CQR54342.1 - 0.051 13.5 0.1 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 HTH domain B-block_TFIIIC PF04182.12 CQR54342.1 - 0.073 13.2 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_6 PF01418.17 CQR54342.1 - 0.12 12.4 0.0 0.36 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family FeoC PF09012.10 CQR54342.1 - 0.13 12.3 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator MFS_1 PF07690.16 CQR54343.1 - 2e-50 171.7 64.1 9e-50 169.6 62.6 2.0 2 0 0 2 2 2 1 Major Facilitator Superfamily TRI12 PF06609.13 CQR54343.1 - 4.9e-15 55.0 34.7 7.7e-15 54.3 34.7 1.2 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 CQR54343.1 - 4.3e-10 39.0 17.4 4.3e-10 39.0 17.4 4.1 3 2 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 CQR54343.1 - 0.0016 17.1 54.1 0.0033 16.0 24.9 3.4 3 2 0 3 3 3 2 MFS/sugar transport protein CENP-X PF09415.10 CQR54343.1 - 0.18 12.1 0.1 0.55 10.6 0.0 1.7 2 0 0 2 2 2 0 CENP-S associating Centromere protein X MarR PF01047.22 CQR54344.1 - 6e-08 32.5 0.2 1.3e-07 31.4 0.2 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR54344.1 - 1.7e-06 27.8 0.0 3.9e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 CQR54344.1 - 5.3e-06 26.5 0.4 1.1e-05 25.5 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 CQR54344.1 - 2.4e-05 24.7 0.2 0.00011 22.6 0.0 2.2 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 CQR54344.1 - 0.00034 20.4 0.0 0.00074 19.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Ribosomal_S25 PF03297.15 CQR54344.1 - 0.0018 18.5 0.1 0.0032 17.6 0.1 1.5 1 0 0 1 1 1 1 S25 ribosomal protein HTH_24 PF13412.6 CQR54344.1 - 0.0065 16.0 0.4 0.026 14.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 CQR54344.1 - 0.0066 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 CQR54344.1 - 0.023 14.7 0.1 0.039 13.9 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 CQR54344.1 - 0.025 14.9 0.1 0.045 14.1 0.1 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_1 PF00126.27 CQR54344.1 - 0.034 14.1 0.0 0.071 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 CQR54344.1 - 0.042 13.8 0.1 0.087 12.8 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 CQR54344.1 - 0.062 13.5 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GAD PF02938.14 CQR54344.1 - 0.099 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 GAD domain HTH_10 PF04967.12 CQR54344.1 - 0.14 12.0 0.0 0.41 10.5 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain DUF2642 PF10842.8 CQR54347.1 - 0.076 12.9 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) YjcZ_2 PF09680.10 CQR54348.1 - 0.0024 17.5 5.5 0.004 16.8 5.5 1.4 1 0 0 1 1 1 1 Family of unknown function YjcZ_2 PF09680.10 CQR54349.1 - 0.098 12.3 10.0 0.098 12.3 10.0 1.8 2 0 0 2 2 2 0 Family of unknown function OrfB_IS605 PF01385.19 CQR54350.1 - 1.2e-29 103.0 2.1 3.3e-29 101.6 2.1 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR54350.1 - 2.6e-23 81.7 0.5 5.7e-23 80.6 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR54350.1 - 3e-23 81.0 1.8 7.9e-23 79.7 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L32e PF01655.18 CQR54350.1 - 0.012 16.0 4.9 0.029 14.8 4.9 1.6 1 0 0 1 1 1 0 Ribosomal protein L32 P-mevalo_kinase PF04275.14 CQR54350.1 - 0.068 13.1 1.1 0.18 11.8 1.1 1.6 1 0 0 1 1 1 0 Phosphomevalonate kinase zf-RanBP PF00641.18 CQR54350.1 - 9.1 5.7 8.7 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Acetyltransf_1 PF00583.25 CQR54351.1 - 7.6e-11 42.3 0.1 9.1e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR54351.1 - 0.00084 19.3 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR54351.1 - 0.00091 19.6 0.1 0.0014 19.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR54351.1 - 0.016 15.3 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR54351.1 - 0.047 13.8 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 CQR54351.1 - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DDE_Tnp_1 PF01609.21 CQR54352.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR54352.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR54352.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR54352.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain Amidase PF01425.21 CQR54353.1 - 5.4e-85 286.0 0.1 2.4e-84 283.9 0.1 1.8 1 1 0 1 1 1 1 Amidase Cellulase PF00150.18 CQR54354.1 - 9.1e-37 127.0 3.0 1.4e-36 126.4 3.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) CBM_3 PF00942.18 CQR54354.1 - 1.6e-20 73.3 1.6 4.6e-20 71.8 0.3 2.4 3 0 0 3 3 3 1 Cellulose binding domain AP_endonuc_2 PF01261.24 CQR54354.1 - 0.041 13.3 0.0 5.2 6.4 0.0 2.7 3 0 0 3 3 3 0 Xylose isomerase-like TIM barrel LTD PF00932.19 CQR54354.1 - 0.11 12.8 2.6 0.4 11.0 2.6 2.0 1 1 0 1 1 1 0 Lamin Tail Domain HTH_18 PF12833.7 CQR54355.1 - 5.1e-22 77.9 0.5 1.2e-21 76.8 0.5 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Peripla_BP_2 PF01497.18 CQR54355.1 - 1.9e-20 73.5 0.0 5.2e-20 72.0 0.0 1.7 2 0 0 2 2 2 1 Periplasmic binding protein HTH_AraC PF00165.23 CQR54355.1 - 3.7e-20 71.5 0.8 7.4e-09 35.5 0.2 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_31 PF13560.6 CQR54355.1 - 0.0034 17.7 2.2 0.0048 17.2 0.1 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR54355.1 - 0.016 15.3 0.1 0.063 13.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix Peripla_BP_2 PF01497.18 CQR54356.1 - 2.6e-23 82.8 0.3 4e-23 82.2 0.3 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Glycoprotein_B PF00606.18 CQR54356.1 - 0.2 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B ectodomain FecCD PF01032.18 CQR54357.1 - 2.1e-85 286.5 37.5 2.5e-85 286.2 37.5 1.0 1 0 0 1 1 1 1 FecCD transport family ThiP_synth PF10120.9 CQR54357.1 - 0.15 11.7 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine-phosphate synthase FecCD PF01032.18 CQR54358.1 - 3.5e-92 308.7 34.6 4.3e-92 308.4 34.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 CQR54359.1 - 4.8e-31 108.1 0.0 6.6e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54359.1 - 3.8e-10 40.1 0.8 1.7e-05 24.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR54359.1 - 1.5e-06 27.9 0.1 0.035 13.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR54359.1 - 4e-06 26.8 0.0 0.00015 21.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 CQR54359.1 - 1.1e-05 24.4 0.8 0.0054 15.6 0.4 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR54359.1 - 7.7e-05 23.1 0.3 0.00017 22.0 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR54359.1 - 0.0001 21.9 0.1 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR54359.1 - 0.00078 19.7 0.2 0.0018 18.5 0.2 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR54359.1 - 0.00094 19.1 0.1 0.0014 18.6 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 CQR54359.1 - 0.0015 18.5 0.9 0.004 17.1 0.3 1.9 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 CQR54359.1 - 0.0022 18.3 0.4 0.0036 17.6 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR54359.1 - 0.0033 17.2 1.2 0.008 15.9 1.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR54359.1 - 0.0034 17.9 0.1 0.0053 17.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR54359.1 - 0.022 14.7 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 CQR54359.1 - 0.029 14.4 1.4 0.086 12.8 0.4 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 CQR54359.1 - 0.053 13.1 0.3 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 CQR54359.1 - 0.058 12.7 0.1 0.088 12.1 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 CQR54359.1 - 0.059 13.5 0.2 0.11 12.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 CQR54359.1 - 0.059 13.2 0.1 1.5 8.6 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal AAA_14 PF13173.6 CQR54359.1 - 0.062 13.3 0.5 0.26 11.3 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 CQR54359.1 - 0.072 13.4 0.7 0.13 12.5 0.7 1.7 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 CQR54359.1 - 0.088 11.7 0.7 8.2 5.2 0.0 2.4 2 1 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Mg_chelatase PF01078.21 CQR54359.1 - 0.1 12.0 0.1 0.34 10.2 0.1 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.18 CQR54359.1 - 0.1 12.3 0.1 0.2 11.3 0.1 1.5 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase RecA PF00154.21 CQR54359.1 - 0.14 11.6 0.1 0.23 10.9 0.1 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_27 PF13514.6 CQR54359.1 - 0.14 11.7 0.0 0.35 10.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.22 CQR54359.1 - 0.17 11.5 0.2 0.27 10.8 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 CQR54359.1 - 0.19 12.2 0.0 0.34 11.3 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2813 PF11398.8 CQR54359.1 - 0.19 10.9 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Adeno_IVa2 PF02456.15 CQR54359.1 - 0.27 10.0 0.1 0.44 9.3 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein FhuF_C PF11575.8 CQR54360.1 - 0.021 14.8 8.4 0.038 13.9 8.4 1.5 1 0 0 1 1 1 0 FhuF 2Fe-2S C-terminal domain FhuF PF06276.12 CQR54360.1 - 0.022 15.2 0.2 0.049 14.0 0.2 1.6 1 1 0 1 1 1 0 Ferric iron reductase FhuF-like transporter tRNA-synt_1b PF00579.25 CQR54361.1 - 7.4e-85 284.8 0.1 9.1e-85 284.5 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.25 CQR54361.1 - 6e-10 38.7 0.0 1.4e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 S4 domain Vps52 PF04129.12 CQR54361.1 - 0.029 13.1 0.4 0.054 12.2 0.4 1.3 1 0 0 1 1 1 0 Vps52 / Sac2 family Lysine_decarbox PF03641.14 CQR54363.1 - 2.3e-39 134.5 0.1 2.8e-39 134.3 0.1 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 CQR54363.1 - 5.7e-16 58.5 0.0 6.1e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 CQR54363.1 - 0.0027 17.0 0.1 0.0034 16.7 0.1 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A Mito_carr PF00153.27 CQR54363.1 - 0.1 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial carrier protein Hydrolase_4 PF12146.8 CQR54364.1 - 0.036 13.3 0.0 0.31 10.3 0.0 2.0 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Viral_env_E26 PF11050.8 CQR54364.1 - 0.071 12.5 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Virus envelope protein E26 Abhydrolase_6 PF12697.7 CQR54364.1 - 0.14 12.7 0.1 0.2 12.2 0.1 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_S8 PF00082.22 CQR54365.1 - 1.7e-34 119.4 2.8 1e-18 67.6 0.0 2.1 2 0 0 2 2 2 2 Subtilase family DUF5508 PF17621.2 CQR54365.1 - 0.0014 17.9 0.1 0.34 10.1 0.1 2.8 2 1 1 3 3 3 2 Family of unknown function (DUF5508) DUF1003 PF06210.11 CQR54366.1 - 3.7 7.7 7.2 0.31 11.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) DUF883 PF05957.13 CQR54367.1 - 0.04 14.5 15.6 0.31 11.7 2.1 3.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) V-ATPase_G_2 PF16999.5 CQR54367.1 - 0.14 12.6 34.3 0.47 10.9 14.3 3.5 1 1 2 3 3 3 0 Vacuolar (H+)-ATPase G subunit Apolipoprotein PF01442.18 CQR54367.1 - 0.21 11.4 21.8 0.59 10.0 21.9 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain SpoVR PF04293.13 CQR54367.1 - 0.26 9.9 1.5 0.44 9.2 1.5 1.2 1 0 0 1 1 1 0 SpoVR like protein ApoLp-III PF07464.11 CQR54367.1 - 0.31 11.1 17.3 0.22 11.6 11.0 2.2 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF948 PF06103.11 CQR54367.1 - 0.44 10.8 6.4 1.8 8.9 2.3 3.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1451 PF07295.11 CQR54367.1 - 1.1 9.3 12.8 0.069 13.2 4.0 2.5 1 1 0 2 2 2 0 Zinc-ribbon containing domain EspB PF05802.11 CQR54367.1 - 1.8 8.5 21.4 7.7 6.4 18.7 2.4 1 1 0 1 1 1 0 Enterobacterial EspB protein PG_binding_1 PF01471.18 CQR54368.1 - 2.3e-07 30.9 0.0 5e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Peptidase_M74 PF03411.13 CQR54368.1 - 0.011 15.3 2.2 0.015 14.8 0.0 2.2 2 1 1 3 3 3 0 Penicillin-insensitive murein endopeptidase AMP-binding PF00501.28 CQR54369.1 - 9e-96 321.0 0.0 1.4e-95 320.4 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.20 CQR54369.1 - 5.9e-70 236.2 0.0 2.3e-44 151.9 0.0 2.6 2 1 0 2 2 2 2 Condensation domain adh_short PF00106.25 CQR54369.1 - 6.7e-62 208.4 0.9 1.1e-61 207.8 0.9 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54369.1 - 1.7e-49 168.5 0.7 1e-48 166.0 0.7 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase PP-binding PF00550.25 CQR54369.1 - 1.4e-17 63.8 5.6 1.9e-05 25.0 0.1 4.5 3 1 0 3 3 3 3 Phosphopantetheine attachment site KR PF08659.10 CQR54369.1 - 1.3e-15 57.8 0.4 2.7e-15 56.7 0.4 1.5 1 0 0 1 1 1 1 KR domain AMP-binding_C PF13193.6 CQR54369.1 - 2.7e-12 47.5 0.0 7.7e-12 46.0 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1776 PF08643.10 CQR54369.1 - 0.047 13.1 0.0 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 CQR54369.1 - 0.16 11.8 0.5 0.32 10.9 0.5 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MFS_1 PF07690.16 CQR54370.1 - 7.2e-36 123.8 45.3 1.5e-24 86.6 17.0 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR54370.1 - 0.00036 19.2 6.9 0.00036 19.2 6.9 2.9 2 2 0 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.7 CQR54370.1 - 0.00039 19.4 7.9 0.00039 19.4 7.9 2.1 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.24 CQR54370.1 - 0.00062 18.7 36.0 0.0063 15.4 6.0 3.5 1 1 1 3 3 3 3 Sugar (and other) transporter ketoacyl-synt PF00109.26 CQR54371.1 - 4.2e-161 534.4 0.0 3.8e-81 272.4 0.0 2.8 2 0 0 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 CQR54371.1 - 2.9e-83 275.7 0.7 6.8e-41 139.0 0.1 2.8 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain AMP-binding PF00501.28 CQR54371.1 - 8.5e-72 242.1 0.0 1.8e-71 241.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme Acyl_transf_1 PF00698.21 CQR54371.1 - 1.3e-46 159.6 0.0 2.7e-46 158.5 0.0 1.4 1 0 0 1 1 1 1 Acyl transferase domain KR PF08659.10 CQR54371.1 - 3.5e-40 137.8 0.0 7.7e-40 136.7 0.0 1.6 1 0 0 1 1 1 1 KR domain KAsynt_C_assoc PF16197.5 CQR54371.1 - 5.4e-36 123.4 0.0 5.1e-18 65.6 0.0 2.6 2 0 0 2 2 2 2 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR54371.1 - 2.6e-26 91.8 0.0 4.9e-13 49.2 0.0 2.7 2 0 0 2 2 2 2 Phosphopantetheine attachment site Thiolase_N PF00108.23 CQR54371.1 - 1.8e-13 50.5 0.8 4.2e-06 26.3 0.2 2.5 2 0 0 2 2 2 2 Thiolase, N-terminal domain adh_short PF00106.25 CQR54371.1 - 7.7e-10 38.5 0.0 1.5e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54371.1 - 5.9e-07 29.3 0.1 3.4e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase ACP_syn_III PF08545.10 CQR54371.1 - 0.00014 21.6 3.0 1.5 8.7 0.2 4.1 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Epimerase PF01370.21 CQR54371.1 - 0.00057 19.4 0.0 0.00099 18.6 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family AMP-binding_C PF13193.6 CQR54371.1 - 0.0067 17.4 0.1 0.031 15.3 0.1 2.3 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 3Beta_HSD PF01073.19 CQR54371.1 - 0.11 11.5 0.0 0.28 10.2 0.0 1.7 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 CQR54371.1 - 0.17 11.3 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Nitroreductase PF00881.24 CQR54372.1 - 1.6e-06 28.3 0.4 0.0024 18.0 0.4 2.8 1 1 0 1 1 1 1 Nitroreductase family Glyco_hydro_39 PF01229.17 CQR54373.1 - 1.1e-76 258.4 1.6 1.1e-76 258.4 1.6 3.2 3 2 1 4 4 4 1 Glycosyl hydrolases family 39 HTH_18 PF12833.7 CQR54373.1 - 1.4e-18 66.9 0.1 1.7e-17 63.4 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR54373.1 - 3.6e-11 43.1 0.2 1.1e-10 41.6 0.1 1.8 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR54373.1 - 1.3e-08 34.4 0.1 3e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 Cupin domain HTH_AraC PF00165.23 CQR54373.1 - 4.1e-08 33.1 0.1 0.00067 19.7 0.1 3.1 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family Glyco_hydro_cc PF11790.8 CQR54373.1 - 5e-07 29.5 0.2 1.7e-06 27.8 0.2 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core MannoseP_isomer PF01050.18 CQR54373.1 - 0.025 14.5 0.5 0.05 13.5 0.5 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase ABC_tran PF00005.27 CQR54374.1 - 6.2e-40 136.9 0.4 5.6e-22 78.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR54374.1 - 0.0006 19.7 2.0 0.17 11.7 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR54374.1 - 0.0016 18.0 0.4 0.017 14.5 0.4 2.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR54374.1 - 0.0025 17.5 0.1 0.0025 17.5 0.1 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR54374.1 - 0.046 13.4 0.0 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain CodY PF06018.14 CQR54374.1 - 0.053 13.0 0.1 5.4 6.5 0.0 2.4 2 0 0 2 2 2 0 CodY GAF-like domain BPD_transp_2 PF02653.16 CQR54375.1 - 2.9e-34 118.4 37.7 2.9e-34 118.4 37.7 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Peripla_BP_4 PF13407.6 CQR54376.1 - 3.6e-10 39.9 0.3 4.7e-10 39.5 0.3 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain DLH PF01738.18 CQR54376.1 - 0.0084 15.7 0.1 0.051 13.1 0.1 2.0 1 1 1 2 2 2 1 Dienelactone hydrolase family BPD_transp_2 PF02653.16 CQR54377.1 - 2.7e-13 49.7 35.7 2.7e-13 49.7 35.7 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Arif-1 PF06770.11 CQR54377.1 - 0.008 15.9 1.8 0.02 14.6 1.8 1.7 1 0 0 1 1 1 1 Actin-rearrangement-inducing factor (Arif-1) Glyco_hydro_3 PF00933.21 CQR54378.1 - 2e-66 224.6 0.0 2.4e-66 224.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Abhydrolase_3 PF07859.13 CQR54379.1 - 3.1e-15 56.6 0.0 3.9e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR54379.1 - 3.2e-05 23.5 0.0 0.22 11.0 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 CQR54379.1 - 0.0043 16.9 0.0 0.0085 15.9 0.0 1.5 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase BAAT_C PF08840.11 CQR54379.1 - 0.0073 16.3 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 CQR54379.1 - 0.066 12.8 0.0 8.3 5.9 0.0 2.4 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF829 PF05705.14 CQR54379.1 - 0.17 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) HAD_2 PF13419.6 CQR54380.1 - 4.5e-22 79.0 0.0 6.4e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR54380.1 - 1.6e-17 64.5 0.8 5.4e-17 62.8 0.8 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR54380.1 - 7.2e-06 26.5 0.2 1.4e-05 25.6 0.1 1.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54380.1 - 0.014 15.4 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.6 CQR54380.1 - 0.12 12.5 0.6 2.3 8.4 0.6 2.5 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Methyltransf_14 PF08484.11 CQR54380.1 - 0.16 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain CPBP PF02517.16 CQR54381.1 - 1.5e-17 63.7 6.2 1.5e-17 63.7 6.2 2.1 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease ABC2_membrane PF01061.24 CQR54382.1 - 3.2e-09 36.5 14.0 3.2e-09 36.5 14.0 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR54382.1 - 6.7e-07 28.7 26.8 6.7e-07 28.7 26.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR54382.1 - 4.3e-06 26.2 24.8 1.6e-05 24.3 24.8 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 CQR54383.1 - 5.9e-32 111.0 0.0 9.3e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54383.1 - 5.6e-10 39.5 1.8 8.4e-08 32.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 CQR54383.1 - 0.00012 22.1 0.0 0.00024 21.1 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 CQR54383.1 - 0.0023 18.4 0.3 0.01 16.2 0.3 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 CQR54383.1 - 0.0039 16.9 0.0 0.015 15.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR54383.1 - 0.005 17.1 1.0 0.035 14.4 0.9 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR54383.1 - 0.0073 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 CQR54383.1 - 0.012 15.0 0.3 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 CQR54383.1 - 0.056 12.6 0.4 2.9 7.0 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_29 PF13555.6 CQR54383.1 - 0.073 12.8 0.2 0.15 11.8 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 CQR54383.1 - 0.083 12.6 0.2 0.27 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 CQR54383.1 - 0.086 11.9 0.2 0.2 10.7 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_15 PF13175.6 CQR54383.1 - 0.1 12.3 0.9 0.83 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 CQR54383.1 - 0.1 13.0 0.1 0.21 11.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 CQR54383.1 - 0.11 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Use1 PF09753.9 CQR54383.1 - 0.13 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Membrane fusion protein Use1 AAA_33 PF13671.6 CQR54383.1 - 0.16 12.1 0.0 0.34 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR54383.1 - 0.34 11.4 2.6 0.5 10.8 2.6 1.4 1 1 0 1 1 1 0 AAA domain LytTR PF04397.15 CQR54384.1 - 2.5e-24 85.4 0.4 4e-24 84.7 0.4 1.4 1 0 0 1 1 1 1 LytTr DNA-binding domain ADH_zinc_N PF00107.26 CQR54385.1 - 1e-18 67.5 0.1 2.1e-18 66.6 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 CQR54385.1 - 4.6e-09 37.4 0.0 7.7e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase LDcluster4 PF18306.1 CQR54385.1 - 1.1 8.8 3.2 0.67 9.5 0.6 1.9 3 0 0 3 3 3 0 SLOG cluster4 family MLTR_LBD PF17765.1 CQR54386.1 - 0.00055 20.1 0.1 0.00096 19.3 0.1 1.5 1 1 0 1 1 1 1 MmyB-like transcription regulator ligand binding domain Eno-Rase_FAD_bd PF07055.12 CQR54386.1 - 0.023 15.1 0.0 0.068 13.6 0.0 1.8 1 0 0 1 1 1 0 Enoyl reductase FAD binding domain Glyco_hydro_30 PF02055.16 CQR54387.1 - 3.6e-42 144.6 0.2 6.6e-42 143.7 0.2 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 30 TIM-barrel domain Glyco_hydro_59 PF02057.15 CQR54387.1 - 2.9e-09 36.6 2.1 1.6e-07 30.9 2.1 2.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 59 Glyco_hydro_30C PF17189.4 CQR54387.1 - 1.8e-06 28.1 0.0 3.3e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 beta sandwich domain Alpha-L-AF_C PF06964.12 CQR54387.1 - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Alpha-L-arabinofuranosidase C-terminal domain ACTH_domain PF00976.18 CQR54387.1 - 0.19 11.7 4.0 4.9 7.2 0.1 2.6 2 0 0 2 2 2 0 Corticotropin ACTH domain His_kinase PF06580.13 CQR54388.1 - 6.2e-23 80.9 1.2 1.8e-22 79.4 1.2 1.9 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR54388.1 - 1.3e-09 38.6 0.0 2.6e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 CQR54388.1 - 7.9e-07 29.1 1.8 1.3e-06 28.4 1.8 1.3 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR54388.1 - 0.047 14.1 0.4 0.23 11.9 0.4 2.3 1 1 0 1 1 1 0 HAMP domain Oxidored_molyb PF00174.19 CQR54388.1 - 0.05 13.2 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase molybdopterin binding domain Response_reg PF00072.24 CQR54389.1 - 3.4e-27 94.8 0.0 8.2e-27 93.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54389.1 - 6.2e-22 77.7 0.0 1.6e-21 76.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54389.1 - 1.8e-14 53.4 0.0 2.5e-08 33.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family SBP_bac_1 PF01547.25 CQR54390.1 - 2.2e-30 106.7 8.8 4.1e-30 105.8 8.8 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54390.1 - 1.1e-28 100.9 7.5 1.1e-28 100.9 7.5 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54390.1 - 0.001 18.5 0.4 0.16 11.4 0.2 2.7 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR54390.1 - 0.0061 16.3 0.1 0.54 10.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein LPAM_1 PF08139.12 CQR54390.1 - 0.007 16.8 4.4 0.014 15.8 4.4 1.6 1 0 0 1 1 1 1 Prokaryotic membrane lipoprotein lipid attachment site CNOT1_TTP_bind PF16417.5 CQR54390.1 - 0.025 13.7 0.0 0.073 12.2 0.0 1.7 2 0 0 2 2 2 0 CCR4-NOT transcription complex subunit 1 TTP binding domain BPD_transp_1 PF00528.22 CQR54391.1 - 1.2e-18 67.5 19.0 1.2e-18 67.5 19.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54392.1 - 1.6e-21 76.9 14.8 1.6e-21 76.9 14.8 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_42 PF02449.15 CQR54393.1 - 3.4e-77 260.3 0.5 4.2e-77 260.0 0.5 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 CQR54393.1 - 3.3e-39 134.5 0.1 5.3e-39 133.9 0.1 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Cellulase PF00150.18 CQR54393.1 - 3.7e-05 23.3 0.0 6.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.19 CQR54393.1 - 0.00062 19.5 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_2_C PF02836.17 CQR54393.1 - 0.0061 15.7 0.0 0.02 14.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain ABC_transp_aux PF09822.9 CQR54393.1 - 0.055 12.9 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 ABC-type uncharacterized transport system PTS_EIIA_1 PF00358.20 CQR54394.1 - 9.4e-49 164.4 0.2 2.3e-48 163.2 0.2 1.7 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIC PF02378.18 CQR54394.1 - 3.8e-28 98.5 26.9 3.8e-28 98.5 26.9 2.1 1 1 1 2 2 2 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR54394.1 - 4.4e-13 48.5 0.0 9.7e-13 47.4 0.0 1.6 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl_2 PF13533.6 CQR54394.1 - 0.0089 15.8 0.2 0.041 13.7 0.2 2.1 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 CQR54394.1 - 0.15 11.9 1.0 2.2 8.2 0.0 2.8 2 1 0 2 2 2 0 Biotin-requiring enzyme Glyco_hydro_1 PF00232.18 CQR54395.1 - 1.4e-130 435.7 2.1 6.9e-130 433.5 2.1 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 PRD PF00874.20 CQR54396.1 - 9.5e-37 125.2 11.9 3.9e-19 68.7 3.9 2.2 2 0 0 2 2 2 2 PRD domain CAT_RBD PF03123.15 CQR54396.1 - 8.8e-17 60.8 5.2 1.6e-16 59.9 5.2 1.4 1 0 0 1 1 1 1 CAT RNA binding domain PIN_6 PF17146.4 CQR54396.1 - 0.038 14.5 0.1 0.13 12.8 0.0 1.9 2 0 0 2 2 2 0 PIN domain of ribonuclease YitT_membrane PF02588.15 CQR54397.1 - 1.6e-39 135.4 21.4 1.9e-39 135.2 21.4 1.0 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ParE_toxin PF05016.15 CQR54399.1 - 6e-06 26.8 0.0 7.3e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Phage_integrase PF00589.22 CQR54400.1 - 1.6e-07 31.3 0.0 1.3e-06 28.3 0.0 2.0 1 1 1 2 2 2 1 Phage integrase family tRNA-synt_2c PF01411.19 CQR54401.1 - 3.3e-211 702.6 0.0 8.7e-211 701.2 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class II (A) DHHA1 PF02272.19 CQR54401.1 - 3.8e-25 88.9 2.0 9e-25 87.7 2.0 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 CQR54401.1 - 8.2e-18 64.2 0.9 2.1e-17 63.0 0.9 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF2205 PF10224.9 CQR54401.1 - 0.03 14.3 0.3 0.086 12.9 0.3 1.7 1 0 0 1 1 1 0 Short coiled-coil protein GTP_EFTU_D2 PF03144.25 CQR54401.1 - 0.1 13.0 0.1 0.35 11.3 0.1 1.9 1 0 0 1 1 1 0 Elongation factor Tu domain 2 NPV_P10 PF05531.12 CQR54401.1 - 0.17 12.4 0.5 0.77 10.3 0.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein IreB PF06135.12 CQR54402.1 - 3e-33 113.9 0.1 3.4e-33 113.7 0.1 1.0 1 0 0 1 1 1 1 IreB regulatory phosphoprotein RuvX PF03652.15 CQR54403.1 - 1.6e-46 158.0 0.0 1.8e-46 157.9 0.0 1.0 1 0 0 1 1 1 1 Holliday junction resolvase DUF1292 PF06949.11 CQR54404.1 - 5.7e-17 62.4 15.2 5.7e-17 62.4 15.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1292) Sad1_UNC PF07738.13 CQR54404.1 - 0.063 13.3 0.0 0.077 13.0 0.0 1.2 1 0 0 1 1 1 0 Sad1 / UNC-like C-terminal DUF3727 PF12527.8 CQR54404.1 - 0.069 13.4 0.6 0.069 13.4 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3727) DUF1292 PF06949.11 CQR54405.1 - 3.6e-12 47.1 0.5 5.2e-12 46.5 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1292) YceG PF02618.16 CQR54406.1 - 4.1e-86 289.0 0.0 4.7e-86 288.8 0.0 1.0 1 0 0 1 1 1 1 YceG-like family BslA PF17735.1 CQR54406.1 - 0.084 12.9 0.1 0.38 10.8 0.0 2.1 3 0 0 3 3 3 0 Biofilm surface layer A Peptidase_U32 PF01136.19 CQR54407.1 - 5.8e-59 199.1 0.0 8.8e-59 198.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 Peptidase_U32 PF01136.19 CQR54408.1 - 1.1e-87 293.1 0.0 1.7e-87 292.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family U32 Peptidase_U32_C PF16325.5 CQR54408.1 - 6.4e-25 87.2 0.0 1.5e-24 86.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase family U32 C-terminal domain PucR PF07905.11 CQR54408.1 - 0.0082 16.4 0.0 0.078 13.3 0.0 2.2 2 1 0 2 2 2 1 Purine catabolism regulatory protein-like family Glyco_transf_92 PF01697.27 CQR54408.1 - 0.13 11.9 0.2 7.5 6.1 0.1 2.2 2 0 0 2 2 2 0 Glycosyltransferase family 92 MCPsignal PF00015.21 CQR54409.1 - 6.3e-30 104.2 34.5 2.2e-28 99.2 12.4 4.9 2 1 1 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR54409.1 - 1.1e-18 67.9 7.2 1.1e-18 67.9 7.2 2.7 2 1 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR54409.1 - 4.8e-12 46.1 6.0 1.7e-11 44.3 0.1 3.2 3 0 0 3 3 3 1 HAMP domain CorA PF01544.18 CQR54409.1 - 0.0023 17.3 4.2 0.12 11.7 0.2 3.0 1 1 0 2 2 2 2 CorA-like Mg2+ transporter protein DUF948 PF06103.11 CQR54409.1 - 0.0056 16.9 30.4 0.032 14.5 0.9 5.7 4 1 0 4 4 4 2 Bacterial protein of unknown function (DUF948) GAT PF03127.14 CQR54409.1 - 0.065 13.5 15.5 2.1 8.7 0.0 4.8 4 0 0 4 4 4 0 GAT domain RasGEF PF00617.19 CQR54409.1 - 0.34 11.1 2.2 9.8 6.3 2.3 3.0 1 1 0 1 1 1 0 RasGEF domain ZapB PF06005.12 CQR54409.1 - 1.2 9.6 0.0 1.2 9.6 0.0 3.8 4 0 0 4 4 4 0 Cell division protein ZapB DHR10 PF18595.1 CQR54409.1 - 2 8.5 9.3 0.38 10.8 0.2 3.7 3 2 0 3 3 3 0 Designed helical repeat protein 10 domain COG2 PF06148.11 CQR54409.1 - 4.8 7.3 15.2 0.78 9.8 2.5 4.2 3 1 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Mod_r PF07200.13 CQR54409.1 - 8.7 6.4 17.8 21 5.2 0.2 4.6 2 1 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein His_kinase PF06580.13 CQR54410.1 - 5.2e-23 81.2 0.2 1.3e-22 79.9 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR54410.1 - 3.8e-14 53.1 8.3 3.8e-14 53.1 8.3 1.7 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR54410.1 - 5.1e-14 52.4 0.5 1.2e-13 51.2 0.5 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR54410.1 - 1.8e-09 38.1 0.0 5e-08 33.4 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AI-2E_transport PF01594.16 CQR54410.1 - 0.041 13.0 4.9 0.044 12.9 0.8 2.1 2 0 0 2 2 2 0 AI-2E family transporter Svf1 PF08622.10 CQR54410.1 - 0.041 13.9 0.0 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 Svf1-like N-terminal lipocalin domain Prominin PF05478.11 CQR54410.1 - 0.069 11.1 4.0 2.2 6.1 2.1 2.4 2 0 0 2 2 2 0 Prominin DUF4446 PF14584.6 CQR54410.1 - 0.12 12.3 5.4 0.82 9.6 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) MitMem_reg PF13012.6 CQR54410.1 - 0.26 11.7 6.2 1.3 9.5 1.3 2.8 2 1 0 2 2 2 0 Maintenance of mitochondrial structure and function DUF4229 PF14012.6 CQR54410.1 - 1 9.5 4.5 0.38 10.9 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) SBP_bac_1 PF01547.25 CQR54411.1 - 1e-24 88.1 11.8 1.8e-24 87.3 11.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54411.1 - 1.4e-20 74.2 9.6 1.4e-20 74.2 9.6 1.8 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Peripla_BP_3 PF13377.6 CQR54412.1 - 8.5e-32 110.8 0.0 1.5e-31 110.0 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR54412.1 - 5.5e-11 42.4 0.0 7.4e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR54412.1 - 1e-09 38.0 0.0 2.1e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR54412.1 - 0.0065 16.1 0.0 0.015 14.8 0.0 1.7 2 0 0 2 2 2 1 Periplasmic binding protein domain HTH_10 PF04967.12 CQR54412.1 - 0.011 15.5 0.0 0.86 9.5 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain YcgL PF05166.13 CQR54412.1 - 0.031 14.6 0.0 1.8 9.0 0.0 2.7 3 0 0 3 3 3 0 YcgL domain Glyco_hydro_130 PF04041.13 CQR54414.1 - 2.6e-23 82.5 0.0 4.1e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase DUF1861 PF08950.10 CQR54414.1 - 5.6e-05 22.5 0.0 0.0033 16.7 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF1861) GlcNAc_2-epim PF07221.11 CQR54415.1 - 4.1e-42 144.7 10.1 5.3e-42 144.3 10.1 1.1 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 CQR54415.1 - 4.2e-09 36.0 5.1 3.9e-05 22.9 0.3 2.2 1 1 1 2 2 2 2 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.13 CQR54415.1 - 8.8e-07 28.6 2.5 0.039 13.4 0.8 2.9 2 1 0 2 2 2 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.14 CQR54415.1 - 0.00032 20.3 5.9 0.01 15.4 1.0 2.9 1 1 1 3 3 3 3 Glycosyl hydrolase family 76 LANC_like PF05147.13 CQR54415.1 - 0.00048 18.8 1.2 0.22 10.1 0.0 2.9 2 1 1 3 3 3 2 Lanthionine synthetase C-like protein GTA_TIM PF13547.6 CQR54416.1 - 0.0023 17.3 4.8 0.086 12.1 1.4 2.8 1 1 1 2 2 2 2 GTA TIM-barrel-like domain Response_reg PF00072.24 CQR54417.1 - 5.9e-25 87.6 0.1 9.5e-25 87.0 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54417.1 - 8.9e-20 70.8 0.0 2.9e-19 69.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54417.1 - 1.8e-16 59.8 0.0 3.7e-07 30.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_3 PF01381.22 CQR54417.1 - 0.03 14.4 0.0 0.59 10.2 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix Peripla_BP_3 PF13377.6 CQR54418.1 - 6.6e-20 72.1 0.0 1.5e-19 70.9 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR54418.1 - 1.4e-06 28.0 0.0 1.7e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR54418.1 - 3e-05 23.7 0.0 5.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_10 PF04967.12 CQR54418.1 - 0.064 13.1 0.1 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Crp_2 PF13545.6 CQR54418.1 - 0.15 12.1 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FAD_oxidored PF12831.7 CQR54419.1 - 1.1e-107 361.1 0.3 1.3e-107 360.9 0.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR54419.1 - 3.1e-08 33.1 4.5 3.7e-07 29.6 2.0 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 CQR54419.1 - 6.7e-06 26.2 1.1 1.8e-05 24.8 1.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 CQR54419.1 - 4.3e-05 22.9 2.5 9e-05 21.8 2.5 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR54419.1 - 0.00062 18.6 3.5 0.00062 18.6 3.5 1.4 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 CQR54419.1 - 0.00075 18.7 4.5 0.00075 18.7 4.5 2.9 4 0 0 4 4 4 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 CQR54419.1 - 0.0012 18.1 5.2 0.0024 17.2 3.3 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR54419.1 - 0.0013 18.1 6.1 0.003 16.9 2.9 2.1 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 CQR54419.1 - 0.0017 18.0 7.7 0.059 13.0 4.5 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 CQR54419.1 - 0.0052 16.1 7.8 0.027 13.7 6.3 2.5 2 1 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 CQR54419.1 - 0.012 15.0 1.6 0.021 14.1 1.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 CQR54419.1 - 0.044 12.8 3.6 2.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.27 CQR54419.1 - 0.15 12.6 3.0 0.32 11.6 1.5 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 CQR54419.1 - 4.2 6.1 6.2 0.88 8.3 1.6 2.0 3 0 0 3 3 3 0 Tryptophan halogenase SBP_bac_1 PF01547.25 CQR54420.1 - 3.9e-32 112.5 12.7 3.9e-32 112.5 12.7 2.7 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54420.1 - 4.3e-25 89.1 9.4 4.3e-25 89.1 9.4 2.1 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR54420.1 - 0.0069 16.2 0.0 3.5 7.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Glyco_hydro_42 PF02449.15 CQR54420.1 - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Beta-galactosidase BPD_transp_1 PF00528.22 CQR54421.1 - 1.6e-18 67.1 14.4 1.6e-18 67.1 14.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54422.1 - 3.4e-12 46.5 15.5 3.4e-12 46.5 15.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0114 PF03350.16 CQR54422.1 - 4.5 7.5 10.2 0.87 9.8 1.1 3.0 2 2 0 2 2 2 0 Uncharacterized protein family, UPF0114 Glyco_hydro_130 PF04041.13 CQR54423.1 - 1.4e-78 264.0 0.0 1.7e-78 263.8 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_43 PF04616.14 CQR54423.1 - 0.0013 18.2 0.6 0.2 10.9 0.0 2.8 2 1 1 3 3 3 2 Glycosyl hydrolases family 43 AXE1 PF05448.12 CQR54424.1 - 6.8e-121 402.8 0.0 8e-121 402.6 0.0 1.0 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 CQR54424.1 - 2.3e-10 40.3 0.0 2.6e-09 36.9 0.0 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 CQR54424.1 - 2.8e-10 39.9 1.2 0.00018 20.9 0.0 2.8 2 1 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR54424.1 - 5.4e-08 33.7 0.0 8.6e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 CQR54424.1 - 2.3e-06 27.4 0.0 0.27 10.8 0.0 3.0 3 0 0 3 3 3 3 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 CQR54424.1 - 6.3e-05 22.6 0.0 0.00022 20.8 0.0 1.7 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 CQR54424.1 - 0.0024 17.6 0.0 0.0099 15.6 0.0 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) BAAT_C PF08840.11 CQR54424.1 - 0.12 12.3 0.0 0.28 11.1 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal MCPsignal PF00015.21 CQR54425.1 - 1.8e-27 96.3 9.8 1.8e-27 96.3 9.8 3.8 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR54425.1 - 1.4e-14 54.5 0.8 1.4e-14 54.5 0.8 2.7 3 0 0 3 3 3 1 Cache domain HAMP PF00672.25 CQR54425.1 - 2.7e-11 43.7 6.6 1.2e-10 41.6 0.3 3.6 3 1 0 3 3 3 1 HAMP domain Seryl_tRNA_N PF02403.22 CQR54425.1 - 0.39 11.0 8.0 1 9.6 0.1 4.2 2 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain HisKA_3 PF07730.13 CQR54425.1 - 0.58 10.7 6.4 22 5.7 0.1 4.5 3 1 1 4 4 4 0 Histidine kinase Transpeptidase PF00905.22 CQR54427.1 - 1.6e-52 178.6 0.0 6.9e-52 176.6 0.0 1.8 2 0 0 2 2 2 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 CQR54427.1 - 3.1e-08 34.2 0.0 8.4e-08 32.8 0.0 1.6 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain DUF5368 PF17336.2 CQR54427.1 - 0.061 13.5 0.8 0.14 12.3 0.8 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5368) AI-2E_transport PF01594.16 CQR54428.1 - 2.9e-39 135.2 42.2 3.4e-39 134.9 42.2 1.0 1 0 0 1 1 1 1 AI-2E family transporter Erf4 PF10256.9 CQR54428.1 - 0.29 11.2 1.5 27 4.9 0.1 3.0 2 1 0 2 2 2 0 Golgin subfamily A member 7/ERF4 family Epiglycanin_C PF14654.6 CQR54428.1 - 8.3 6.5 8.9 67 3.6 0.2 3.6 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region Polysacc_deac_1 PF01522.21 CQR54429.1 - 9.6e-27 93.3 0.0 2e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase CEP170_C PF15308.6 CQR54429.1 - 0.18 10.4 0.1 0.26 9.8 0.1 1.1 1 0 0 1 1 1 0 CEP170 C-terminus Glyco_hydro_130 PF04041.13 CQR54430.1 - 2.3e-55 187.8 0.0 4.1e-42 144.2 0.0 2.0 2 0 0 2 2 2 2 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_43 PF04616.14 CQR54430.1 - 0.079 12.3 0.1 1 8.6 0.0 2.6 2 2 0 3 3 3 0 Glycosyl hydrolases family 43 SBP_bac_8 PF13416.6 CQR54431.1 - 5.5e-33 115.0 4.4 7.9e-33 114.5 4.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54431.1 - 6.4e-29 101.9 9.5 9.1e-29 101.4 9.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54431.1 - 0.026 14.0 0.3 0.61 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein LysM PF01476.20 CQR54431.1 - 0.15 12.2 0.1 0.37 10.9 0.1 1.7 1 0 0 1 1 1 0 LysM domain GA-like PF17573.2 CQR54431.1 - 0.18 11.8 1.2 28 4.7 0.2 2.8 2 0 0 2 2 2 0 GA-like domain BPD_transp_1 PF00528.22 CQR54432.1 - 3.5e-20 72.5 12.9 3.5e-20 72.5 12.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54433.1 - 1.4e-17 64.1 20.5 1.4e-17 64.1 20.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component His_kinase PF06580.13 CQR54434.1 - 9.9e-24 83.5 2.2 1.7e-23 82.7 1.3 2.0 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR54434.1 - 8.2e-13 48.7 0.2 1.5e-12 47.9 0.2 1.4 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR54434.1 - 1.2e-12 48.0 0.0 4e-12 46.3 0.0 1.9 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR54434.1 - 2e-07 31.5 0.0 3.9e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR54434.1 - 0.021 14.7 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR54434.1 - 0.029 14.3 0.1 0.058 13.3 0.1 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain sCache_3_3 PF17202.4 CQR54434.1 - 0.042 14.3 0.1 0.16 12.4 0.1 2.0 2 0 0 2 2 2 0 Single cache domain 3 Response_reg PF00072.24 CQR54435.1 - 1.4e-26 92.8 0.1 3.7e-26 91.5 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54435.1 - 7.2e-20 71.0 0.0 2e-19 69.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54435.1 - 1e-15 57.3 0.6 5.1e-09 36.0 0.1 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54435.1 - 0.0036 17.5 0.2 0.013 15.8 0.2 2.0 1 0 0 1 1 1 1 GGDEF-like domain Glyco_hydro_3 PF00933.21 CQR54436.1 - 8.7e-58 196.2 0.0 1.2e-57 195.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR54436.1 - 1.1e-54 185.5 0.0 1.8e-54 184.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 CQR54436.1 - 1.1e-15 57.5 0.0 2.4e-15 56.4 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain Transglut_C PF00927.22 CQR54436.1 - 0.064 13.4 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain ILVD_EDD PF00920.21 CQR54438.1 - 1.3e-223 743.4 0.2 1.4e-223 743.2 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family DUF4179 PF13786.6 CQR54439.1 - 1.2 9.7 2.5 7.1 7.2 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) Abhydrolase_5 PF12695.7 CQR54440.1 - 5.6e-63 211.6 0.9 6.9e-63 211.3 0.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR54440.1 - 1.5e-07 30.9 0.9 6.2e-05 22.4 0.1 3.0 2 1 1 3 3 3 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR54440.1 - 0.00011 21.9 0.1 0.00037 20.2 0.1 1.7 1 1 1 2 2 2 1 alpha/beta hydrolase fold Thioesterase PF00975.20 CQR54440.1 - 0.00043 20.5 0.5 0.00069 19.8 0.5 1.2 1 0 0 1 1 1 1 Thioesterase domain Lipase_3 PF01764.25 CQR54440.1 - 0.00085 19.2 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_6 PF12697.7 CQR54440.1 - 0.0015 19.2 0.6 0.0034 18.0 0.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family SPC25 PF06703.11 CQR54440.1 - 0.0089 15.8 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Microsomal signal peptidase 25 kDa subunit (SPC25) DLH PF01738.18 CQR54440.1 - 0.039 13.5 0.2 0.15 11.5 0.0 1.8 1 1 0 2 2 2 0 Dienelactone hydrolase family DUF2974 PF11187.8 CQR54440.1 - 0.33 10.5 2.4 0.63 9.6 0.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2974) HAD_2 PF13419.6 CQR54441.1 - 1.1e-23 84.3 0.0 6e-23 81.8 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR54441.1 - 1.4e-14 54.9 1.2 8.3e-14 52.4 1.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54441.1 - 3e-09 36.8 0.0 5.6e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR54441.1 - 1.9e-07 31.7 1.7 2.7e-06 27.9 1.7 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR54441.1 - 0.69 9.6 1.8 1.1 9.0 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase SIR2 PF02146.17 CQR54442.1 - 1.5e-49 168.3 0.0 1.9e-49 168.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Aldo_ket_red PF00248.21 CQR54443.1 - 1.1e-65 221.8 0.0 1.2e-65 221.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AraC_binding PF02311.19 CQR54444.1 - 3.5e-21 75.5 0.1 6e-21 74.8 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_18 PF12833.7 CQR54444.1 - 9.4e-21 73.9 0.3 2.7e-20 72.4 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54444.1 - 2.7e-19 68.8 0.8 7.8e-10 38.6 0.0 2.9 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding_2 PF14525.6 CQR54444.1 - 9.7e-05 22.1 0.0 0.00038 20.2 0.0 2.0 1 1 0 1 1 1 1 AraC-binding-like domain HTH_31 PF13560.6 CQR54444.1 - 0.001 19.4 0.0 0.5 10.7 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain Cupin_2 PF07883.11 CQR54444.1 - 0.0026 17.4 0.0 0.0054 16.4 0.0 1.5 1 0 0 1 1 1 1 Cupin domain FAM86 PF14904.6 CQR54444.1 - 0.075 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function GalKase_gal_bdg PF10509.9 CQR54445.1 - 9.4e-21 73.1 0.1 2.6e-20 71.7 0.1 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.26 CQR54445.1 - 2.7e-13 49.9 0.2 6.7e-13 48.7 0.2 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 CQR54445.1 - 3.3e-13 49.8 0.0 6.5e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Epimerase PF01370.21 CQR54446.1 - 1.4e-62 211.3 0.1 1.7e-62 211.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR54446.1 - 3e-58 197.8 0.0 3.7e-58 197.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 CQR54446.1 - 2.8e-19 69.2 0.0 3.5e-17 62.3 0.0 2.1 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 CQR54446.1 - 3e-19 69.2 0.1 4.2e-19 68.7 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 CQR54446.1 - 3.6e-17 62.5 0.4 9.8e-16 57.7 0.4 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 CQR54446.1 - 2e-09 37.6 0.0 4.2e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 CQR54446.1 - 4.6e-09 35.8 0.2 3.3e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein KR PF08659.10 CQR54446.1 - 1.1e-05 25.4 0.6 0.00094 19.1 0.6 2.3 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 CQR54446.1 - 2.6e-05 23.9 0.0 6.4e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 CQR54446.1 - 0.0052 16.3 0.0 0.018 14.5 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.18 CQR54446.1 - 0.0069 16.6 0.2 0.031 14.5 0.1 2.1 2 0 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 CQR54446.1 - 0.027 14.1 0.3 0.076 12.6 0.1 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GalP_UDP_tr_C PF02744.17 CQR54447.1 - 2e-29 102.4 0.0 4.6e-29 101.3 0.0 1.6 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain GalP_UDP_transf PF01087.22 CQR54447.1 - 5.9e-28 98.5 0.0 8.8e-28 98.0 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain Fe-ADH PF00465.19 CQR54449.1 - 5.6e-106 354.4 0.0 6.3e-106 354.3 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 CQR54449.1 - 3.9e-14 53.0 0.1 1.6e-07 31.3 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DEDD_Tnp_IS110 PF01548.17 CQR54450.1 - 3.9e-25 88.5 0.0 4.6e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Transposase Ribonuc_2-5A PF06479.12 CQR54450.1 - 0.064 13.4 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease 2-5A Rop-like PF05082.13 CQR54450.1 - 0.12 12.2 0.5 0.21 11.4 0.5 1.4 1 0 0 1 1 1 0 Rop-like Transposase_20 PF02371.16 CQR54451.1 - 4.2e-13 49.4 0.0 6.9e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family HbrB PF08539.11 CQR54451.1 - 0.064 13.2 0.1 0.072 13.1 0.1 1.1 1 0 0 1 1 1 0 HbrB-like DSX_dimer PF08828.10 CQR54452.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR54452.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain NfeD PF01957.18 CQR54453.1 - 3.2e-05 24.2 0.9 5.4e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding FtsX_ECD PF18075.1 CQR54453.1 - 0.01 16.4 0.0 0.025 15.2 0.0 1.6 2 0 0 2 2 2 0 FtsX extracellular domain Band_7 PF01145.25 CQR54454.1 - 5e-26 91.8 0.0 5e-26 91.8 0.0 3.4 2 1 1 3 3 3 1 SPFH domain / Band 7 family Flot PF15975.5 CQR54454.1 - 4e-10 39.9 2.7 4e-10 39.9 2.7 4.5 3 1 1 4 4 4 2 Flotillin ABC_tran PF00005.27 CQR54455.1 - 2.4e-20 73.5 0.0 3.3e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54455.1 - 9e-06 25.7 3.9 0.0047 16.8 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR54455.1 - 3.8e-05 24.3 1.0 5.1e-05 23.9 0.4 1.5 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR54455.1 - 0.0049 16.8 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 CQR54455.1 - 0.04 14.0 0.2 0.093 12.8 0.1 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 CQR54455.1 - 0.073 12.5 0.9 0.55 9.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF402 PF04167.13 CQR54455.1 - 0.14 12.4 0.1 0.25 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF402) Lig_chan PF00060.26 CQR54456.1 - 0.38 10.6 4.7 1.2 9.0 4.7 1.8 1 0 0 1 1 1 0 Ligand-gated ion channel PRD PF00874.20 CQR54457.1 - 2.6e-43 146.2 4.6 8.1e-23 80.5 0.9 2.8 2 1 1 3 3 3 2 PRD domain CAT_RBD PF03123.15 CQR54457.1 - 1.6e-21 76.0 2.0 2.9e-21 75.2 2.0 1.4 1 0 0 1 1 1 1 CAT RNA binding domain DUF3418 PF11898.8 CQR54457.1 - 0.0076 15.0 0.6 0.82 8.3 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF3418) PTS_EIIC PF02378.18 CQR54458.1 - 1.5e-90 303.5 27.4 2.6e-90 302.7 27.4 1.4 1 0 0 1 1 1 1 Phosphotransferase system, EIIC PTS_EIIA_1 PF00358.20 CQR54458.1 - 2.8e-45 153.2 0.6 5.6e-45 152.2 0.6 1.5 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIB PF00367.20 CQR54458.1 - 1.7e-14 53.0 0.5 2.9e-14 52.3 0.5 1.4 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl_2 PF13533.6 CQR54458.1 - 0.015 15.1 0.0 0.085 12.7 0.0 2.2 2 0 0 2 2 2 0 Biotin-lipoyl like Biotin_lipoyl PF00364.22 CQR54458.1 - 0.02 14.7 0.1 0.094 12.6 0.1 2.1 1 0 0 1 1 1 0 Biotin-requiring enzyme RnfC_N PF13375.6 CQR54458.1 - 0.059 13.3 0.9 1.6 8.7 0.0 3.0 2 1 0 3 3 3 0 RnfC Barrel sandwich hybrid domain PTS-HPr PF00381.19 CQR54459.1 - 1.2e-22 79.9 0.3 1.3e-22 79.8 0.3 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PEP-utilizers_C PF02896.18 CQR54460.1 - 1.4e-124 415.0 0.0 2.5e-124 414.2 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 CQR54460.1 - 3.2e-33 114.4 5.1 5.4e-33 113.6 3.0 2.4 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 CQR54460.1 - 2.2e-24 85.0 0.2 5.8e-24 83.6 0.2 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain GrpE PF01025.19 CQR54460.1 - 0.36 10.5 6.3 0.84 9.3 1.9 2.5 1 1 0 2 2 2 0 GrpE Alpha-amylase PF00128.24 CQR54461.1 - 2.7e-16 60.0 0.0 1.6e-07 31.2 0.0 3.2 2 1 1 3 3 3 2 Alpha amylase, catalytic domain PUD PF03714.14 CQR54461.1 - 1.4e-15 57.9 0.2 3.6e-15 56.6 0.2 1.7 1 0 0 1 1 1 1 Bacterial pullanase-associated domain CBM_48 PF02922.18 CQR54461.1 - 3.4e-10 40.1 0.1 1.8e-09 37.8 0.1 2.4 2 1 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DUF3372 PF11852.8 CQR54461.1 - 9.7e-06 25.2 0.0 1.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3372) GHL5 PF14872.6 CQR54461.1 - 0.13 10.3 0.0 0.19 9.7 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 GGDEF PF00990.21 CQR54462.1 - 1.2e-43 148.6 0.3 4.6e-43 146.8 0.0 2.1 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 CQR54462.1 - 4.7e-05 23.6 0.0 0.00012 22.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain 4HB_MCP_1 PF12729.7 CQR54462.1 - 9.4e-05 22.0 0.5 9.4e-05 22.0 0.5 1.8 2 0 0 2 2 2 1 Four helix bundle sensory module for signal transduction PAS PF00989.25 CQR54462.1 - 0.0002 21.3 0.0 0.00064 19.7 0.0 2.0 2 1 0 2 2 2 1 PAS fold PAS_4 PF08448.10 CQR54462.1 - 0.00052 20.2 0.0 0.0025 18.0 0.0 2.1 1 1 0 1 1 1 1 PAS fold PAS_3 PF08447.12 CQR54462.1 - 0.00077 19.7 0.0 0.0051 17.1 0.0 2.4 2 1 0 2 2 2 1 PAS fold WEMBL PF05701.11 CQR54462.1 - 0.18 10.5 0.0 0.28 9.8 0.0 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Claudin_3 PF06653.11 CQR54462.1 - 0.63 10.0 4.0 6.2 6.7 0.3 2.6 3 0 0 3 3 3 0 Tight junction protein, Claudin-like tRNA-synt_2d PF01409.20 CQR54463.1 - 9.5e-107 356.0 0.0 1.2e-106 355.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 CQR54463.1 - 7.5e-23 80.2 3.4 1.2e-22 79.6 0.4 2.2 1 1 1 2 2 2 1 Aminoacyl tRNA synthetase class II, N-terminal domain B3_4 PF03483.17 CQR54464.1 - 1.6e-66 223.3 0.0 2.9e-66 222.5 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA_synthFbeta PF17759.1 CQR54464.1 - 8.2e-63 211.7 0.0 1.3e-62 211.1 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain FDX-ACB PF03147.14 CQR54464.1 - 1.1e-30 105.9 0.0 2.1e-30 105.0 0.0 1.5 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain tRNA_bind PF01588.20 CQR54464.1 - 1.5e-25 89.1 0.8 2.8e-25 88.2 0.8 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain B5 PF03484.15 CQR54464.1 - 2.7e-18 66.0 0.1 9.3e-18 64.3 0.1 2.0 1 0 0 1 1 1 1 tRNA synthetase B5 domain Lebercilin PF15619.6 CQR54465.1 - 0.002 17.8 27.1 0.002 17.8 27.1 6.5 2 2 3 6 6 6 1 Ciliary protein causing Leber congenital amaurosis disease DUF4201 PF13870.6 CQR54465.1 - 0.0073 16.1 8.8 0.0073 16.1 8.8 7.8 1 1 7 8 8 8 4 Domain of unknown function (DUF4201) Cupredoxin_1 PF13473.6 CQR54466.1 - 1.3e-05 25.2 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.20 CQR54466.1 - 0.027 14.4 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain CarbopepD_reg_2 PF13715.6 CQR54466.1 - 0.056 13.4 0.1 0.14 12.1 0.1 1.6 2 0 0 2 2 2 0 CarboxypepD_reg-like domain GGDEF PF00990.21 CQR54467.1 - 5.7e-38 130.2 0.0 9.2e-38 129.5 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Baculo_11_kDa PF06143.11 CQR54467.1 - 0.13 11.8 1.8 0.37 10.4 0.4 2.3 2 0 0 2 2 2 0 Baculovirus 11 kDa family Phage_holin_4_2 PF04020.13 CQR54468.1 - 2.5e-14 53.8 21.4 3e-14 53.6 21.4 1.0 1 0 0 1 1 1 1 Mycobacterial 4 TMS phage holin, superfamily IV DUF2512 PF10710.9 CQR54468.1 - 0.091 12.4 12.4 0.14 11.8 12.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) DUF5455 PF17537.2 CQR54468.1 - 0.59 10.6 21.3 2.5 8.6 5.9 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5455) DUF2427 PF10348.9 CQR54468.1 - 1.5 8.7 8.0 1.5 8.7 7.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2427) DUF3180 PF11377.8 CQR54468.1 - 2.4 8.3 16.0 5.2 7.2 16.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3180) MutS_V PF00488.21 CQR54469.1 - 6.1e-39 134.0 0.1 1e-38 133.3 0.1 1.3 1 0 0 1 1 1 1 MutS domain V Smr PF01713.21 CQR54469.1 - 8.1e-19 67.8 0.2 2.7e-18 66.1 0.2 2.0 1 0 0 1 1 1 1 Smr domain AAA_22 PF13401.6 CQR54469.1 - 0.093 13.0 1.9 0.21 11.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain RGS-like PF09128.11 CQR54469.1 - 0.12 12.1 5.4 0.38 10.4 5.4 1.9 1 0 0 1 1 1 0 Regulator of G protein signalling-like domain OmpH PF03938.14 CQR54469.1 - 0.48 10.7 10.9 3.3 8.1 8.5 2.7 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) ATP-synt_B PF00430.18 CQR54469.1 - 6.4 6.9 22.7 18 5.5 22.7 1.8 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) DUF350 PF03994.14 CQR54470.1 - 3.5e-29 100.7 7.1 2.2e-14 53.3 1.7 2.1 2 0 0 2 2 2 2 Domain of Unknown Function (DUF350) DUF5336 PF17270.2 CQR54470.1 - 0.032 13.8 2.3 0.076 12.6 1.2 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5336) Cytochrom_C_asm PF01578.20 CQR54470.1 - 0.051 13.3 5.5 0.23 11.2 1.8 2.3 1 1 1 2 2 2 0 Cytochrome C assembly protein CrgA PF06781.12 CQR54470.1 - 0.51 10.4 5.1 1.2 9.3 0.4 2.1 2 0 0 2 2 2 0 Cell division protein CrgA DZR PF12773.7 CQR54471.1 - 0.00075 19.5 3.7 0.08 13.0 0.4 3.1 3 0 0 3 3 3 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 CQR54471.1 - 0.0012 18.8 8.6 0.64 10.0 0.1 4.1 3 1 1 4 4 4 1 Transposase zinc-ribbon domain zf-CHY PF05495.12 CQR54471.1 - 0.0037 17.7 2.0 3.6 8.2 0.0 3.4 3 1 0 3 3 3 1 CHY zinc finger zf-TFIIB PF13453.6 CQR54471.1 - 0.018 14.4 1.8 8.9 5.7 0.0 3.8 4 0 0 4 4 4 0 Transcription factor zinc-finger Cytochrom_c3_2 PF14537.6 CQR54471.1 - 0.029 14.8 1.9 4.4 7.8 0.1 2.6 2 1 0 2 2 2 0 Cytochrome c3 zf-Di19 PF05605.12 CQR54471.1 - 0.039 14.3 5.5 11 6.5 0.1 4.0 4 0 0 4 4 4 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.6 CQR54471.1 - 0.046 13.8 3.4 3.8 7.6 0.0 3.7 4 0 0 4 4 4 0 CpXC protein Zn-ribbon_8 PF09723.10 CQR54471.1 - 0.092 12.9 11.5 9.8 6.4 0.1 4.2 3 1 0 4 4 4 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 CQR54471.1 - 0.15 11.9 9.6 8.9 6.2 0.2 3.8 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger NdhM PF10664.9 CQR54471.1 - 0.16 12.3 0.1 0.25 11.6 0.1 1.4 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M zf-RING_4 PF14570.6 CQR54471.1 - 0.17 11.7 7.9 0.17 11.7 1.1 3.1 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain HypA PF01155.19 CQR54471.1 - 0.28 11.2 3.9 2.7 8.0 0.2 2.6 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AhpC-TSA PF00578.21 CQR54471.1 - 0.48 10.3 1.7 8.2 6.4 0.0 2.4 3 0 0 3 3 2 0 AhpC/TSA family zinc-ribbons_6 PF07191.12 CQR54471.1 - 0.51 10.4 9.0 0.28 11.2 0.3 2.9 2 1 1 3 3 3 0 zinc-ribbons YacG PF03884.14 CQR54471.1 - 0.51 10.1 8.5 6 6.7 0.3 3.9 4 0 0 4 4 4 0 DNA gyrase inhibitor YacG zinc_ribbon_2 PF13240.6 CQR54471.1 - 0.69 9.7 12.9 2.8 7.8 0.6 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-IS66 PF13005.7 CQR54471.1 - 0.76 10.2 6.2 23 5.5 0.1 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-C3HC4_3 PF13920.6 CQR54471.1 - 0.88 9.5 6.5 2 8.3 0.6 3.1 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.13 CQR54471.1 - 1.1 9.3 7.6 34 4.5 0.2 3.9 3 1 1 4 4 4 0 Putative zinc finger motif, C2HC5-type TerY_C PF15616.6 CQR54471.1 - 1.1 9.4 7.0 14 5.8 0.2 3.5 3 1 1 4 4 4 0 TerY-C metal binding domain zf-ribbon_3 PF13248.6 CQR54471.1 - 1.2 8.6 12.8 5.7 6.5 0.4 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-LITAF-like PF10601.9 CQR54471.1 - 1.4 9.3 7.4 23 5.3 0.1 3.8 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain YdjO PF14169.6 CQR54471.1 - 1.5 8.6 9.1 5.9 6.7 0.2 3.5 3 1 1 4 4 4 0 Cold-inducible protein YdjO PADR1 PF08063.12 CQR54471.1 - 1.7 8.5 9.2 6.9 6.5 0.2 3.5 3 1 1 4 4 4 0 PADR1 (NUC008) domain Prok-RING_4 PF14447.6 CQR54471.1 - 2.1 8.3 10.5 15 5.6 0.1 4.0 3 1 1 4 4 4 0 Prokaryotic RING finger family 4 zf_UBZ PF18439.1 CQR54471.1 - 3 7.5 9.7 45 3.8 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger DiS_P_DiS PF06750.13 CQR54471.1 - 9.7 6.4 6.2 19 5.4 0.1 3.4 3 1 1 4 4 4 0 Bacterial Peptidase A24 N-terminal domain MFS_1 PF07690.16 CQR54472.1 - 4.9e-12 45.4 38.1 4.9e-12 45.4 38.1 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR54472.1 - 1 8.2 20.9 0.058 12.2 12.4 2.2 1 1 1 2 2 2 0 MFS_1 like family DUF4267 PF14087.6 CQR54472.1 - 9.3 6.4 17.8 5.7 7.1 0.2 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4267) sCache_3_2 PF17203.4 CQR54473.1 - 1.1e-21 77.4 0.2 4.6e-21 75.4 0.1 2.0 2 0 0 2 2 2 1 Single cache domain 3 HATPase_c PF02518.26 CQR54473.1 - 4.2e-16 59.4 0.0 1.2e-15 58.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 CQR54473.1 - 8.2e-10 38.7 0.1 2.3e-09 37.3 0.1 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 CQR54473.1 - 1.7e-09 37.5 0.0 3.7e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.6 CQR54473.1 - 1.6e-08 34.1 0.0 4.5e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 CQR54473.1 - 7.5e-06 25.9 0.0 1.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 CQR54473.1 - 3e-05 24.2 0.1 0.00012 22.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold sCache_3_3 PF17202.4 CQR54473.1 - 0.00019 21.8 0.0 0.047 14.1 0.0 2.6 2 0 0 2 2 2 1 Single cache domain 3 PAS_8 PF13188.7 CQR54473.1 - 0.0024 17.8 0.0 0.0066 16.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain dCache_3 PF14827.6 CQR54473.1 - 0.0081 15.8 0.8 0.23 11.1 0.1 2.6 2 1 1 3 3 3 1 Double sensory domain of two-component sensor kinase PAS_9 PF13426.7 CQR54473.1 - 0.013 15.8 0.0 0.045 14.0 0.0 2.0 2 0 0 2 2 1 0 PAS domain dCache_1 PF02743.18 CQR54473.1 - 0.027 14.3 0.0 0.13 12.0 0.0 2.1 2 1 0 2 2 2 0 Cache domain PAS_10 PF13596.6 CQR54473.1 - 0.11 13.2 0.0 0.33 11.6 0.0 1.9 1 0 0 1 1 1 0 PAS domain SK_channel PF03530.14 CQR54473.1 - 0.13 12.3 1.2 0.3 11.1 1.2 1.6 1 0 0 1 1 1 0 Calcium-activated SK potassium channel Response_reg PF00072.24 CQR54474.1 - 2.7e-26 92.0 0.0 4.3e-26 91.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain FaeA PF04703.12 CQR54474.1 - 0.00078 19.8 0.1 0.053 13.9 0.0 2.4 2 0 0 2 2 2 1 FaeA-like protein HTH_11 PF08279.12 CQR54474.1 - 0.0042 17.0 0.2 0.36 10.8 0.0 2.6 2 0 0 2 2 2 1 HTH domain CitT PF12431.8 CQR54474.1 - 0.012 15.9 0.0 0.021 15.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator FAD_binding_2 PF00890.24 CQR54475.1 - 9.6e-94 314.8 4.1 1.1e-93 314.6 4.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 CQR54475.1 - 2.7e-13 50.3 0.3 6.2e-13 49.0 0.3 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 CQR54475.1 - 1.3e-12 47.8 0.8 2e-12 47.2 0.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR54475.1 - 1.2e-08 34.1 14.1 4.4e-07 29.0 5.5 3.9 3 1 0 3 3 3 1 HI0933-like protein Pyr_redox_3 PF13738.6 CQR54475.1 - 3.4e-08 33.1 0.5 6e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 CQR54475.1 - 2.2e-06 27.1 9.1 0.00031 20.1 0.5 3.2 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR54475.1 - 7.4e-06 25.4 0.2 1.2e-05 24.7 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 CQR54475.1 - 3.3e-05 23.3 1.6 0.00089 18.6 0.0 3.1 3 0 0 3 3 3 1 Thi4 family Pyr_redox PF00070.27 CQR54475.1 - 5.7e-05 23.6 2.9 0.025 15.1 0.1 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR54475.1 - 7.4e-05 22.9 0.0 0.0003 21.0 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 CQR54475.1 - 0.00011 21.4 9.1 0.016 14.4 0.3 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A Lycopene_cycl PF05834.12 CQR54475.1 - 0.0057 15.8 0.2 0.14 11.2 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.24 CQR54475.1 - 0.0076 15.6 0.1 3.4 6.9 0.0 2.2 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase tRNA_anti-like PF12869.7 CQR54475.1 - 0.024 14.3 0.7 0.29 10.7 0.0 2.3 2 0 0 2 2 2 0 tRNA_anti-like DAO PF01266.24 CQR54476.1 - 1.6e-44 153.0 0.0 1.8e-44 152.8 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR54476.1 - 1.3e-05 24.4 2.3 0.00015 21.0 1.0 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 CQR54476.1 - 1.7e-05 24.3 0.1 4.2e-05 23.0 0.1 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 CQR54476.1 - 6.9e-05 22.2 0.0 0.0018 17.6 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR54476.1 - 0.00021 20.1 0.0 0.0041 15.9 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 CQR54476.1 - 0.00079 18.9 0.6 0.0014 18.1 0.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR54476.1 - 0.0009 19.4 0.9 0.003 17.8 0.9 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 CQR54476.1 - 0.0024 17.0 0.3 0.0033 16.6 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A DUF3231 PF11553.8 CQR54477.1 - 0.021 14.5 0.4 0.021 14.4 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) Coat_F PF07875.12 CQR54478.1 - 6.3e-16 58.4 8.1 2.5e-15 56.4 0.2 2.1 1 1 1 2 2 2 2 Coat F domain CDPS PF16715.5 CQR54478.1 - 0.022 14.4 1.1 0.026 14.2 1.1 1.1 1 0 0 1 1 1 0 Cyclodipeptide synthase SRP1_TIP1 PF00660.17 CQR54478.1 - 0.044 13.9 0.5 0.064 13.3 0.1 1.5 2 0 0 2 2 2 0 Seripauperin and TIP1 family AsnC_trans_reg PF01037.21 CQR54479.1 - 4e-15 55.5 0.1 8.5e-15 54.5 0.0 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 CQR54479.1 - 6.6e-05 22.4 0.0 0.00053 19.5 0.1 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 CQR54479.1 - 0.0019 18.0 0.3 0.0032 17.3 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Tautomerase PF01361.21 CQR54479.1 - 0.0027 17.6 0.8 0.007 16.3 0.1 2.1 2 0 0 2 2 2 1 Tautomerase enzyme HTH_Crp_2 PF13545.6 CQR54479.1 - 0.033 14.2 0.1 0.17 11.9 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Aminotran_1_2 PF00155.21 CQR54480.1 - 5.2e-73 246.3 0.0 5.9e-73 246.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR54480.1 - 6.6e-08 32.3 0.0 1.4e-07 31.1 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 CQR54480.1 - 1.4e-07 30.8 0.0 2.4e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 CQR54480.1 - 2.1e-05 23.3 0.0 3.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 CQR54480.1 - 0.036 13.3 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase OKR_DC_1 PF01276.20 CQR54480.1 - 0.16 10.6 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF935 PF06074.12 CQR54480.1 - 0.24 10.1 0.0 0.36 9.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) SpoOE-like PF09388.10 CQR54481.1 - 2.4e-11 43.3 1.8 2.9e-11 43.1 1.8 1.1 1 0 0 1 1 1 1 Spo0E like sporulation regulatory protein MarR PF01047.22 CQR54482.1 - 7e-07 29.1 0.0 1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR54482.1 - 1.3e-06 28.1 0.0 2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 CQR54482.1 - 1.8e-06 28.0 0.1 3.2e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 CQR54482.1 - 0.00027 21.3 0.3 0.021 15.3 0.0 2.3 1 1 1 2 2 2 2 Winged helix DNA-binding domain HTH_34 PF13601.6 CQR54482.1 - 0.0056 16.8 0.0 0.011 15.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 CQR54482.1 - 0.0075 16.6 0.2 0.052 13.9 0.2 2.0 1 1 0 1 1 1 1 Penicillinase repressor LexA_DNA_bind PF01726.16 CQR54482.1 - 0.0079 16.0 0.1 0.032 14.0 0.1 2.1 1 1 0 1 1 1 1 LexA DNA binding domain Fe_dep_repress PF01325.19 CQR54482.1 - 0.0082 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RNA_pol_Rpc34 PF05158.12 CQR54482.1 - 0.012 15.0 0.4 0.018 14.4 0.4 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit PadR PF03551.14 CQR54482.1 - 0.039 13.9 0.2 0.2 11.6 0.1 2.2 1 1 2 3 3 3 0 Transcriptional regulator PadR-like family DUF3116 PF11313.8 CQR54482.1 - 0.081 12.8 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) RPA_C PF08784.11 CQR54482.1 - 0.087 13.5 0.1 0.15 12.8 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal FeoC PF09012.10 CQR54482.1 - 0.092 12.8 0.2 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator Amidohydro_1 PF01979.20 CQR54483.1 - 8.7e-25 87.8 0.1 4.4e-24 85.4 0.1 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR54483.1 - 1.3e-18 67.8 0.2 6e-10 39.2 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family DUF2398 PF09661.10 CQR54483.1 - 0.086 12.1 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2398) Gp-FAR-1 PF05823.12 CQR54483.1 - 0.21 11.9 0.1 0.48 10.8 0.1 1.6 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Abhydrolase_1 PF00561.20 CQR54484.1 - 2.2e-09 37.3 0.0 3.8e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Ndr PF03096.14 CQR54484.1 - 4.7e-09 35.3 0.0 8.3e-09 34.5 0.0 1.4 1 0 0 1 1 1 1 Ndr family Abhydrolase_6 PF12697.7 CQR54484.1 - 0.00021 22.0 0.0 0.00034 21.3 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR54484.1 - 0.0016 17.7 0.0 0.0044 16.3 0.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 CQR54484.1 - 0.007 15.9 0.0 12 5.2 0.0 3.2 3 0 0 3 3 3 1 Prolyl oligopeptidase family BAAT_C PF08840.11 CQR54484.1 - 0.012 15.6 0.1 0.042 13.8 0.0 1.9 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.16 CQR54484.1 - 0.033 14.0 0.1 2.5 7.9 0.0 2.3 1 1 0 2 2 2 0 Phospholipase/Carboxylesterase APH PF01636.23 CQR54485.1 - 1.2e-22 81.0 0.0 1.6e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 CQR54485.1 - 7.9e-05 22.3 1.1 0.00032 20.4 1.1 2.0 1 1 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.22 CQR54485.1 - 0.00012 21.7 0.0 0.00064 19.4 0.0 2.0 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.25 CQR54485.1 - 0.0023 17.4 0.1 0.03 13.7 0.1 2.0 2 0 0 2 2 2 1 Protein kinase domain EcKinase PF02958.20 CQR54485.1 - 0.014 14.7 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase APH_6_hur PF04655.14 CQR54485.1 - 0.065 12.6 0.3 0.19 11.1 0.1 1.7 2 0 0 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Kdo PF06293.14 CQR54485.1 - 0.07 12.5 0.4 3 7.1 0.2 2.4 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 CQR54485.1 - 0.13 11.6 0.0 7.4 5.8 0.0 2.1 2 0 0 2 2 2 0 Protein tyrosine kinase Methyltransf_11 PF08241.12 CQR54486.1 - 1.2e-13 51.5 0.0 2.1e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54486.1 - 1.3e-13 51.4 0.0 2.1e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR54486.1 - 2.8e-13 49.8 0.0 3.7e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 CQR54486.1 - 9e-11 41.8 0.0 1.3e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR54486.1 - 7.8e-06 25.8 0.0 1.1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR54486.1 - 0.00012 22.8 0.0 0.00017 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cob_adeno_trans PF01923.18 CQR54487.1 - 6.1e-59 198.8 0.0 6.9e-59 198.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PseudoU_synth_2 PF00849.22 CQR54488.1 - 8.2e-32 110.5 0.2 5.2e-31 107.9 0.0 2.0 2 0 0 2 2 2 1 RNA pseudouridylate synthase Vps16_N PF04841.13 CQR54488.1 - 0.25 10.1 0.0 0.34 9.6 0.0 1.2 1 0 0 1 1 1 0 Vps16, N-terminal region ArsC PF03960.15 CQR54489.1 - 2e-17 62.9 0.0 2.3e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 CQR54489.1 - 0.004 17.3 0.0 0.0068 16.6 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GDPD PF03009.17 CQR54490.1 - 4.9e-33 115.0 0.0 1.5e-30 106.8 0.0 3.2 3 1 0 3 3 3 1 Glycerophosphoryl diester phosphodiesterase family SLH PF00395.20 CQR54490.1 - 2.6e-26 91.4 0.1 4.9e-11 42.4 0.1 3.8 3 0 0 3 3 3 3 S-layer homology domain CBM9_1 PF06452.11 CQR54490.1 - 4e-16 59.5 0.0 1.1e-15 58.0 0.0 1.8 2 0 0 2 2 2 1 Carbohydrate family 9 binding domain-like DUF1080 PF06439.11 CQR54490.1 - 5.7e-12 46.1 0.0 2.3e-07 31.1 0.0 2.4 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1080) GDPD_2 PF13653.6 CQR54490.1 - 0.011 16.2 0.1 14 6.3 0.0 3.3 3 0 0 3 3 3 0 Glycerophosphoryl diester phosphodiesterase family SnoaL_4 PF13577.6 CQR54490.1 - 0.039 14.1 0.0 0.15 12.2 0.0 2.0 1 0 0 1 1 1 0 SnoaL-like domain G3P_antiterm PF04309.12 CQR54491.1 - 5.9e-64 214.6 0.0 6.6e-64 214.5 0.0 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator NMO PF03060.15 CQR54491.1 - 9.9e-06 25.2 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 CQR54491.1 - 0.011 14.7 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 CQR54491.1 - 0.013 14.9 0.1 0.023 14.2 0.1 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein Hydrolase_6 PF13344.6 CQR54492.1 - 1.2e-20 73.4 0.0 2.9e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54492.1 - 1.5e-19 69.8 0.0 6.1e-19 67.9 0.0 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 CQR54492.1 - 1.4e-08 35.3 0.6 9.2e-07 29.4 0.6 3.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 CQR54492.1 - 3.3e-08 33.8 2.2 0.00033 20.8 0.0 3.1 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase LIG3_BRCT PF16759.5 CQR54492.1 - 0.062 13.6 0.0 0.22 11.8 0.0 1.9 2 0 0 2 2 2 0 DNA ligase 3 BRCT domain PGP_phosphatase PF09419.10 CQR54492.1 - 0.062 12.9 0.0 1.4 8.5 0.0 2.5 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase PNK3P PF08645.11 CQR54492.1 - 0.16 11.6 0.3 1.7 8.3 0.3 2.3 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase SBP_bac_8 PF13416.6 CQR54493.1 - 9.8e-48 163.4 16.8 9.8e-48 163.4 16.8 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR54493.1 - 3.8e-38 132.2 14.8 3.8e-38 132.2 14.8 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR54493.1 - 2.2e-05 24.0 3.4 0.081 12.3 0.1 2.7 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein Secretin_N_2 PF07655.13 CQR54493.1 - 0.005 17.4 1.0 0.012 16.1 1.0 1.6 1 0 0 1 1 1 1 Secretin N-terminal domain TrbI PF03743.14 CQR54493.1 - 0.32 10.8 3.4 1 9.2 3.4 1.8 1 0 0 1 1 1 0 Bacterial conjugation TrbI-like protein BPD_transp_1 PF00528.22 CQR54494.1 - 1.2e-19 70.8 19.1 1.2e-19 70.8 19.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54495.1 - 5.9e-16 58.7 15.8 5.9e-16 58.7 15.8 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component AP_endonuc_2 PF01261.24 CQR54496.1 - 8e-22 77.7 0.7 9.7e-22 77.4 0.7 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel 5_3_exonuc_N PF02739.16 CQR54497.1 - 6.4e-50 169.2 0.0 9.4e-50 168.6 0.0 1.2 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain 5_3_exonuc PF01367.20 CQR54497.1 - 1.1e-28 99.7 0.0 2e-28 98.8 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 CQR54497.1 - 0.0023 18.5 0.0 0.0055 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 CQR54497.1 - 0.052 13.7 0.1 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif Alpha-L-AF_C PF06964.12 CQR54498.1 - 3.9e-45 154.0 0.0 7e-45 153.2 0.0 1.4 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain zf-CSL PF05207.13 CQR54499.1 - 3.3 7.5 7.2 35 4.2 7.2 2.2 1 1 0 1 1 1 0 CSL zinc finger ADD_ATRX PF17981.1 CQR54499.1 - 7.7 6.5 9.4 1.1 9.2 3.2 2.5 2 1 1 3 3 3 0 Cysteine Rich ADD domain HTH_20 PF12840.7 CQR54500.1 - 1.3e-08 34.7 2.5 2.5e-08 33.9 2.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR54500.1 - 1.6e-07 31.0 0.3 2.9e-07 30.2 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR54500.1 - 1.8e-06 27.7 0.8 3.8e-06 26.7 0.8 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR54500.1 - 6.4e-06 26.0 0.2 1.3e-05 25.0 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 CQR54500.1 - 0.014 15.6 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 CQR54500.1 - 0.016 15.3 0.8 0.029 14.5 0.8 1.4 1 0 0 1 1 1 0 DprA winged helix domain Rrf2 PF02082.20 CQR54500.1 - 0.045 14.1 0.3 0.091 13.1 0.1 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 CQR54500.1 - 0.14 12.7 0.1 1.3 9.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR54500.1 - 0.14 11.7 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CbiM PF01891.16 CQR54501.1 - 1.8e-52 178.2 16.3 2.5e-52 177.8 16.3 1.2 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 CQR54502.1 - 5.4e-26 90.4 0.2 6.6e-26 90.1 0.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 CQR54503.1 - 1.9e-29 102.9 12.5 2.5e-29 102.5 12.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein Sde2_N_Ubi PF13019.6 CQR54503.1 - 0.011 15.6 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 0 Silencing defective 2 N-terminal ubiquitin domain ABC_tran PF00005.27 CQR54504.1 - 4.8e-26 91.9 0.0 6.3e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54504.1 - 1.1e-10 41.9 1.5 2.3e-07 30.9 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR54504.1 - 3.6e-05 23.3 0.0 5.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 CQR54504.1 - 0.0004 20.0 0.1 0.001 18.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR54504.1 - 0.00056 19.6 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR54504.1 - 0.12 12.8 0.1 0.21 12.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain CbiX PF01903.17 CQR54505.1 - 4.2e-52 175.0 0.0 1.7e-24 86.2 0.0 3.4 3 0 0 3 3 3 2 CbiX TP_methylase PF00590.20 CQR54505.1 - 2.5e-38 132.1 1.1 1.1e-37 130.1 0.9 2.1 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NIR_SIR PF01077.22 CQR54505.1 - 5.9e-10 38.9 0.0 1e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain DAGK_cat PF00781.24 CQR54505.1 - 0.045 13.4 0.1 2 8.1 0.1 2.4 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Peptidase_M17_N PF02789.17 CQR54505.1 - 0.092 12.6 0.0 0.4 10.6 0.0 2.1 1 0 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain SelP_N PF04592.14 CQR54505.1 - 9.3 5.6 31.4 1.1 8.6 24.3 2.2 2 0 0 2 2 2 0 Selenoprotein P, N terminal region CbiJ PF02571.14 CQR54506.1 - 9e-69 231.5 0.0 1.1e-68 231.3 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK CbiC PF02570.15 CQR54507.1 - 6.6e-76 254.3 0.3 7.6e-76 254.1 0.3 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.17 CQR54508.1 - 1.7e-94 315.8 3.2 2.5e-94 315.3 3.2 1.2 1 0 0 1 1 1 1 CbiD NUT PF12881.7 CQR54508.1 - 0.29 9.5 4.2 0.4 9.1 4.2 1.1 1 0 0 1 1 1 0 NUT protein YdfA_immunity PF12127.8 CQR54508.1 - 0.3 10.1 6.5 0.59 9.2 6.5 1.4 1 0 0 1 1 1 0 SigmaW regulon antibacterial TP_methylase PF00590.20 CQR54509.1 - 1.3e-18 67.7 0.0 2.1e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.7 CQR54509.1 - 4e-05 23.6 0.0 7.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54509.1 - 0.0012 19.5 0.0 0.0023 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 CQR54509.1 - 0.0012 18.6 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 CQR54509.1 - 0.0028 17.2 0.0 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain DOT1 PF08123.13 CQR54509.1 - 0.0071 15.9 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Cons_hypoth95 PF03602.15 CQR54509.1 - 0.0094 15.6 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 CQR54509.1 - 0.01 16.5 0.0 0.029 15.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 CQR54509.1 - 0.086 12.1 0.0 0.26 10.5 0.0 1.7 1 1 0 1 1 1 0 O-methyltransferase domain Methyltransf_23 PF13489.6 CQR54509.1 - 0.15 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 CQR54509.1 - 0.23 10.5 0.0 0.35 9.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TP_methylase PF00590.20 CQR54510.1 - 1.5e-49 168.8 0.1 2.1e-49 168.3 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 CQR54511.1 - 5.1e-46 157.3 2.2 6.1e-46 157.0 2.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 CQR54512.1 - 1.2e-34 118.2 0.0 6.8e-34 115.7 0.0 2.3 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 CQR54512.1 - 7.5e-34 116.8 0.3 1.5e-33 115.8 0.3 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_mid PF11761.8 CQR54512.1 - 9.7e-18 64.1 0.0 2.2e-17 63.0 0.0 1.6 1 0 0 1 1 1 1 Cobalamin biosynthesis central region GATase_3 PF07685.14 CQR54513.1 - 4e-39 134.3 0.0 5.4e-39 133.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 CQR54513.1 - 3.4e-20 72.4 0.0 5.4e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 CQR54513.1 - 1.3e-13 51.3 0.4 6.3e-06 26.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF1611 PF07755.11 CQR54513.1 - 0.0029 16.9 1.0 0.013 14.8 1.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain AAA_19 PF13245.6 CQR54513.1 - 0.052 13.9 0.0 0.089 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 CQR54513.1 - 0.085 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ROK PF00480.20 CQR54514.1 - 6.2e-71 239.3 0.0 7.3e-71 239.0 0.0 1.0 1 0 0 1 1 1 1 ROK family HRDC PF00570.23 CQR54515.1 - 1.9e-20 72.6 0.0 7.4e-20 70.7 0.0 2.0 2 0 0 2 2 2 1 HRDC domain HHH PF00633.23 CQR54515.1 - 1.1e-06 28.2 0.1 0.00013 21.6 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HTH_54 PF18607.1 CQR54515.1 - 0.075 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 ParA helix turn helix domain PfkB PF00294.24 CQR54516.1 - 3.7e-49 167.7 0.0 4.6e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR54516.1 - 8.3e-07 28.6 0.0 1.2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 CQR54516.1 - 0.022 14.2 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate kinase CorA PF01544.18 CQR54517.1 - 3.2e-70 236.8 3.5 3.9e-70 236.5 3.5 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF2207 PF09972.9 CQR54517.1 - 0.0077 15.1 0.2 0.01 14.6 0.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) HTS PF04204.16 CQR54518.1 - 1.2e-141 471.0 0.0 1.3e-141 470.8 0.0 1.0 1 0 0 1 1 1 1 Homoserine O-succinyltransferase Cys_Met_Meta_PP PF01053.20 CQR54519.1 - 5.8e-142 472.7 0.0 6.6e-142 472.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 CQR54519.1 - 1.2e-05 24.6 0.0 1.8e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 CQR54519.1 - 0.0012 17.9 0.0 0.0019 17.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 CQR54519.1 - 0.087 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Radical_SAM PF04055.21 CQR54520.1 - 1.6e-17 64.4 0.0 3.7e-17 63.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily 3HCDH_N PF02737.18 CQR54520.1 - 0.018 15.0 0.0 0.083 12.8 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5_nucleotid_C PF02872.18 CQR54521.1 - 4.1e-62 209.1 9.0 2.8e-42 144.6 0.9 3.1 3 0 0 3 3 3 2 5'-nucleotidase, C-terminal domain SLH PF00395.20 CQR54521.1 - 2.3e-37 126.7 9.6 5.7e-14 51.8 0.2 4.8 4 0 0 4 4 4 3 S-layer homology domain Metallophos PF00149.28 CQR54521.1 - 9.8e-22 78.5 0.0 1.5e-11 45.2 0.0 2.3 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase YL1_C PF08265.11 CQR54521.1 - 1.1 9.0 4.1 0.44 10.3 0.2 2.5 3 0 0 3 3 3 0 YL1 nuclear protein C-terminal domain TBD PF12845.7 CQR54522.1 - 0.15 12.0 0.2 0.3 11.0 0.1 1.6 1 1 1 2 2 2 0 TBD domain Band_7 PF01145.25 CQR54523.1 - 3.1e-24 85.9 2.2 4.2e-24 85.5 2.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family DUF3710 PF12502.8 CQR54523.1 - 0.022 14.5 0.2 0.038 13.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3710) Band_7_1 PF13421.6 CQR54523.1 - 0.031 14.0 0.5 0.067 12.9 0.4 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family DUF2537 PF10801.8 CQR54523.1 - 0.09 13.0 4.4 0.23 11.7 1.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2537) DUF2606 PF10794.9 CQR54523.1 - 0.29 10.9 2.3 1.2 8.9 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2606) HicB PF05534.12 CQR54524.1 - 4.1e-06 26.5 0.1 8.3e-06 25.6 0.0 1.5 2 0 0 2 2 2 1 HicB family RHH_5 PF07878.11 CQR54524.1 - 1.7e-05 24.6 0.0 2.3e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Arc PF03869.14 CQR54524.1 - 0.00019 21.2 0.0 0.00021 21.1 0.0 1.1 1 0 0 1 1 1 1 Arc-like DNA binding domain ParD_like PF11903.8 CQR54524.1 - 0.0067 16.5 0.0 0.0079 16.3 0.0 1.2 1 1 0 1 1 1 1 ParD-like antitoxin of type II bacterial toxin-antitoxin system tRNA-synt_2b PF00587.25 CQR54525.1 - 1.5e-32 113.0 0.2 2.7e-32 112.2 0.2 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 CQR54525.1 - 9e-23 80.2 0.1 2.6e-22 78.8 0.1 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 CQR54525.1 - 1.3e-16 60.4 0.0 2.6e-16 59.4 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 CQR54525.1 - 2.1e-14 53.3 0.2 5.9e-13 48.7 0.0 2.5 2 0 0 2 2 2 1 TGS domain 3D PF06725.11 CQR54526.1 - 1.5e-20 73.2 0.1 2.7e-20 72.3 0.1 1.5 1 0 0 1 1 1 1 3D domain DUF2154 PF09922.9 CQR54527.1 - 1.2e-35 121.9 0.7 1.6e-35 121.4 0.7 1.2 1 0 0 1 1 1 1 Cell wall-active antibiotics response 4TMS YvqF DUF4097 PF13349.6 CQR54527.1 - 0.0093 15.3 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 Putative adhesin Ribosomal_L28 PF00830.19 CQR54527.1 - 0.13 12.5 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal L28 family HisKA_3 PF07730.13 CQR54528.1 - 5e-17 62.2 5.9 5.6e-17 62.0 4.3 1.9 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR54528.1 - 1.3e-09 38.6 0.3 4e-09 37.0 0.3 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR54528.1 - 0.00014 21.8 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 CQR54528.1 - 0.0086 16.4 0.2 0.022 15.2 0.2 1.8 1 0 0 1 1 1 1 HAMP domain Fe_hyd_lg_C PF02906.14 CQR54528.1 - 0.061 13.0 0.5 0.14 11.8 0.3 1.6 2 0 0 2 2 2 0 Iron only hydrogenase large subunit, C-terminal domain Response_reg PF00072.24 CQR54529.1 - 9.7e-26 90.1 0.3 1.5e-25 89.5 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR54529.1 - 1.3e-20 72.7 0.2 2.2e-20 71.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR54529.1 - 2.6e-09 36.6 0.0 5.3e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR54529.1 - 1.7e-06 27.4 0.1 4.7e-06 26.0 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR54529.1 - 0.00032 20.4 0.1 0.00093 18.9 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 CQR54529.1 - 0.00064 19.2 0.1 0.0015 18.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 CQR54529.1 - 0.087 13.3 0.2 0.25 11.8 0.2 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR54529.1 - 0.091 12.7 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 CQR54529.1 - 0.1 12.7 0.0 0.5 10.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 CQR54529.1 - 0.17 11.7 0.2 0.48 10.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain TnsD PF15978.5 CQR54529.1 - 0.19 10.7 0.1 0.23 10.4 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D Trypsin_2 PF13365.6 CQR54530.1 - 5.6e-34 118.2 0.3 5.6e-34 118.2 0.3 1.8 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.26 CQR54530.1 - 5.4e-16 59.1 0.6 5.4e-16 59.1 0.6 1.7 2 0 0 2 2 2 1 Trypsin PDZ_2 PF13180.6 CQR54530.1 - 1.4e-15 57.4 0.1 3.8e-15 56.0 0.1 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 CQR54530.1 - 1e-05 25.3 0.0 2.8e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 CQR54530.1 - 0.0036 17.6 0.4 0.029 14.7 0.1 2.7 2 1 0 2 2 2 1 PDZ domain DUF3123 PF11321.8 CQR54530.1 - 0.032 14.9 1.2 0.24 12.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3123) Peptidase_S29 PF02907.15 CQR54530.1 - 0.059 13.1 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.9 CQR54530.1 - 0.15 10.7 1.2 0.25 10.0 0.8 1.5 2 0 0 2 2 2 0 Peptidase S46 Response_reg PF00072.24 CQR54531.1 - 2.1e-32 111.6 0.1 1.7e-31 108.7 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR54531.1 - 7.1e-26 90.1 0.2 3.4e-25 87.9 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 CQR54531.1 - 0.046 14.1 0.0 0.069 13.5 0.0 1.3 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ HATPase_c PF02518.26 CQR54532.1 - 2.8e-23 82.5 0.1 7.6e-23 81.2 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54532.1 - 5.1e-17 61.7 0.5 1.3e-16 60.4 0.3 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR54532.1 - 2.7e-09 37.2 0.0 6.5e-09 36.0 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR54532.1 - 0.044 13.6 0.0 0.081 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Haemocyan_bet_s PF14830.6 CQR54532.1 - 0.044 13.8 0.1 12 6.0 0.0 2.9 3 0 0 3 3 3 0 Haemocyanin beta-sandwich Syntaxin-6_N PF09177.11 CQR54532.1 - 0.066 13.8 0.1 0.14 12.8 0.1 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal LYTB PF02401.18 CQR54533.1 - 9.9e-82 274.1 0.3 1.1e-81 274.0 0.3 1.0 1 0 0 1 1 1 1 LytB protein DUF3123 PF11321.8 CQR54533.1 - 0.036 14.7 0.0 0.071 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3123) DAHP_synth_1 PF00793.20 CQR54534.1 - 2.5e-65 220.1 0.0 9.2e-65 218.2 0.0 1.6 1 1 1 2 2 2 1 DAHP synthetase I family DAHP_snth_FXD PF18152.1 CQR54534.1 - 2.7e-20 72.0 5.0 4.8e-20 71.2 3.4 2.2 2 0 0 2 2 2 1 DAHP synthase ferredoxin-like domain NeuB PF03102.14 CQR54534.1 - 2.1e-09 37.2 0.0 5.5e-09 35.8 0.0 1.6 2 0 0 2 2 2 1 NeuB family PDH PF02153.17 CQR54534.1 - 0.035 13.1 0.1 0.083 11.9 0.1 1.6 1 0 0 1 1 1 0 Prephenate dehydrogenase Gln-synt_C PF00120.24 CQR54535.1 - 2e-127 425.0 0.0 2.3e-127 424.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 CQR54535.1 - 8.5e-30 102.3 0.1 1.6e-29 101.4 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glyco_hydro_36 PF17167.4 CQR54536.1 - 1.2e-20 73.6 4.0 1.3e-08 34.0 0.5 3.4 3 1 0 3 3 3 3 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 CQR54536.1 - 8.7e-09 35.1 0.0 1.3e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 36 DUF4783 PF16022.5 CQR54537.1 - 0.15 12.2 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4783) Aminotran_5 PF00266.19 CQR54538.1 - 5.5e-40 137.5 0.0 6.3e-40 137.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V SpoU_methylase PF00588.19 CQR54539.1 - 2.2e-35 121.9 0.0 2.5e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 SpoU rRNA Methylase family MazE_antitoxin PF04014.18 CQR54540.1 - 6.3e-10 38.7 0.0 8e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Ribosomal_S27 PF01599.19 CQR54540.1 - 0.0063 16.7 0.4 0.011 15.9 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S27a DUF4428 PF14471.6 CQR54540.1 - 0.0094 15.9 0.5 0.014 15.3 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) MraZ PF02381.18 CQR54540.1 - 0.012 15.6 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Gin PF10764.9 CQR54540.1 - 0.037 14.0 0.7 0.12 12.4 0.7 1.8 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin zf-C4_ClpX PF06689.13 CQR54540.1 - 1.4 8.8 6.2 24 4.9 5.0 2.5 2 1 0 2 2 2 0 ClpX C4-type zinc finger NAGPA PF09992.9 CQR54542.1 - 2.3e-31 109.3 0.2 4e-31 108.5 0.1 1.4 2 0 0 2 2 2 1 Phosphodiester glycosidase UPF0242 PF06785.11 CQR54543.1 - 0.0014 18.7 1.4 0.0019 18.4 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF1664 PF07889.12 CQR54543.1 - 0.015 15.4 0.8 0.019 15.0 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) MerR-DNA-bind PF09278.11 CQR54543.1 - 0.015 15.8 0.1 0.043 14.4 0.1 1.7 1 1 1 2 2 2 0 MerR, DNA binding DUF2959 PF11172.8 CQR54543.1 - 0.021 14.9 3.9 0.027 14.6 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) RE_MjaI PF09568.10 CQR54543.1 - 0.029 14.2 0.2 0.038 13.8 0.2 1.2 1 0 0 1 1 1 0 MjaI restriction endonuclease Gon7 PF08738.10 CQR54543.1 - 0.032 14.3 5.5 0.047 13.8 0.6 2.3 1 1 1 2 2 2 0 Gon7 family Fzo_mitofusin PF04799.13 CQR54543.1 - 0.041 13.4 3.7 0.055 13.0 3.7 1.2 1 0 0 1 1 1 0 fzo-like conserved region DUF4201 PF13870.6 CQR54543.1 - 0.063 13.0 8.1 0.077 12.7 8.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF2102 PF09875.9 CQR54543.1 - 0.066 13.0 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2102) DUF840 PF05801.11 CQR54543.1 - 0.071 13.2 0.2 0.1 12.7 0.2 1.1 1 0 0 1 1 1 0 Lagovirus protein of unknown function (DUF840) EMP24_GP25L PF01105.24 CQR54543.1 - 0.088 12.7 6.5 5.2 7.0 0.1 2.7 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD GRIM-19 PF06212.12 CQR54543.1 - 0.12 12.3 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 GRIM-19 protein KxDL PF10241.9 CQR54543.1 - 0.18 12.1 6.8 0.27 11.5 1.4 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF948 PF06103.11 CQR54543.1 - 0.18 12.1 3.2 0.2 11.9 2.1 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF883 PF05957.13 CQR54543.1 - 0.21 12.2 2.0 1.1 9.9 0.6 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) NPV_P10 PF05531.12 CQR54543.1 - 0.21 12.1 6.5 1.1 9.8 1.2 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4883 PF16224.5 CQR54543.1 - 0.27 11.5 3.5 0.35 11.1 3.5 1.2 1 0 0 1 1 1 0 DOmain of unknown function (DUF4883) FlxA PF14282.6 CQR54543.1 - 0.27 11.2 8.9 0.43 10.6 8.0 1.8 1 1 1 2 2 2 0 FlxA-like protein Syntaxin-6_N PF09177.11 CQR54543.1 - 0.3 11.7 5.4 1.9 9.1 4.9 1.9 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF4407 PF14362.6 CQR54543.1 - 0.39 10.0 6.6 0.3 10.4 4.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DASH_Hsk3 PF08227.11 CQR54543.1 - 2.9 8.3 0.0 2.9 8.3 0.0 2.9 3 1 0 3 3 3 0 DASH complex subunit Hsk3 like Response_reg PF00072.24 CQR54544.1 - 3.1e-17 62.8 0.0 5.2e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR54544.1 - 7.4e-10 38.2 0.2 1.3e-09 37.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR54544.1 - 0.007 16.0 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 CQR54544.1 - 0.023 14.6 0.4 0.075 13.0 0.1 1.9 1 1 1 2 2 2 0 HTH domain HTH_23 PF13384.6 CQR54544.1 - 0.043 13.6 0.2 0.15 11.9 0.1 1.9 1 1 1 2 2 2 0 Homeodomain-like domain Aminotran_1_2 PF00155.21 CQR54545.1 - 1.3e-30 106.8 0.0 1.7e-30 106.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II ABC_tran PF00005.27 CQR54546.1 - 2.8e-25 89.4 0.0 4.4e-25 88.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54546.1 - 4.2e-11 43.2 0.1 3.5e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR54546.1 - 2.9e-06 26.9 0.2 0.0035 16.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR54546.1 - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR54546.1 - 0.0024 18.4 0.0 0.0046 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 CQR54546.1 - 0.005 16.3 0.0 0.0097 15.4 0.0 1.5 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_18 PF13238.6 CQR54546.1 - 0.0052 17.3 0.1 0.048 14.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR54546.1 - 0.017 14.9 0.0 0.25 11.0 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain NACHT PF05729.12 CQR54546.1 - 0.019 14.9 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 CQR54546.1 - 0.022 14.8 0.1 0.04 13.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 CQR54546.1 - 0.032 14.0 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 CQR54546.1 - 0.039 13.1 0.3 0.058 12.6 0.3 1.6 1 1 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 CQR54546.1 - 0.04 13.8 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 CQR54546.1 - 0.041 13.8 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 CQR54546.1 - 0.044 13.8 0.1 0.65 10.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR54546.1 - 0.045 14.1 0.0 0.056 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 CQR54546.1 - 0.05 13.9 0.1 0.12 12.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 CQR54546.1 - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 CQR54546.1 - 0.13 12.3 0.1 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 CQR54546.1 - 0.13 12.6 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 CQR54546.1 - 0.15 11.9 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 CQR54546.1 - 0.17 11.5 0.1 0.32 10.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 CQR54546.1 - 0.18 11.4 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 CQR54546.1 - 0.19 10.3 0.0 0.21 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 CQR54546.1 - 0.24 8.8 0.3 0.34 8.4 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2161 PF09929.9 CQR54548.1 - 2.5e-33 114.6 0.9 2e-19 69.8 0.1 2.3 2 0 0 2 2 2 2 Putative PD-(D/E)XK phosphodiesterase (DUF2161) PsbQ PF05757.11 CQR54548.1 - 2.7 7.7 8.9 3 7.6 7.1 1.8 2 0 0 2 2 2 0 Oxygen evolving enhancer protein 3 (PsbQ) AAA_PrkA PF08298.11 CQR54549.1 - 6.8e-144 479.2 0.1 1.2e-143 478.3 0.1 1.4 1 0 0 1 1 1 1 PrkA AAA domain PrkA PF06798.12 CQR54549.1 - 2.2e-93 312.6 8.6 3.6e-93 311.9 8.6 1.4 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_16 PF13191.6 CQR54549.1 - 0.0079 16.6 0.1 0.023 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain YppF PF14178.6 CQR54549.1 - 0.051 13.5 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 YppF-like protein AAA_22 PF13401.6 CQR54549.1 - 0.067 13.5 0.1 0.3 11.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 CQR54549.1 - 0.071 12.8 0.0 0.38 10.4 0.0 2.2 3 0 0 3 3 3 0 Sigma-54 interaction domain Rad17 PF03215.15 CQR54549.1 - 0.071 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 CQR54549.1 - 0.18 11.6 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DinB_2 PF12867.7 CQR54551.1 - 1.4e-10 41.8 0.0 1.7e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 DinB superfamily MDMPI_N PF11716.8 CQR54551.1 - 1.5e-06 29.0 0.0 2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Mycothiol maleylpyruvate isomerase N-terminal domain DinB PF05163.12 CQR54551.1 - 6.6e-06 26.1 0.9 2.2e-05 24.4 0.9 1.7 1 1 0 1 1 1 1 DinB family DUF1706 PF08020.11 CQR54551.1 - 0.0024 17.8 0.4 0.0039 17.1 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1706) Cass2 PF14526.6 CQR54552.1 - 9.5e-22 77.8 0.6 1.3e-21 77.3 0.6 1.2 1 0 0 1 1 1 1 Integron-associated effector binding protein HTH_18 PF12833.7 CQR54552.1 - 2.1e-20 72.7 0.3 3.2e-20 72.2 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54552.1 - 2.2e-18 65.9 0.1 3.7e-08 33.3 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GyrI-like PF06445.15 CQR54552.1 - 5.4e-16 59.3 1.3 9.7e-16 58.4 1.3 1.4 1 1 0 1 1 1 1 GyrI-like small molecule binding domain Transglut_core PF01841.19 CQR54553.1 - 2.7e-09 37.5 0.0 6.8e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 CQR54553.1 - 0.00045 19.8 0.7 0.001 18.6 0.7 1.6 1 0 0 1 1 1 1 Transglutaminase-like domain Big_4 PF07532.11 CQR54553.1 - 0.017 14.9 0.1 0.051 13.3 0.1 2.0 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 4) EDR1 PF14381.6 CQR54553.1 - 0.059 13.1 0.1 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 SpoVR PF04293.13 CQR54554.1 - 2.7e-153 510.6 0.1 5.6e-153 509.6 0.1 1.5 1 1 0 1 1 1 1 SpoVR like protein HPPK PF01288.20 CQR54554.1 - 0.15 12.6 0.1 2 9.0 0.0 2.7 3 0 0 3 3 3 0 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Glycos_transf_2 PF00535.26 CQR54555.1 - 2.2e-14 53.6 0.0 4.8e-14 52.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 GtrA PF04138.14 CQR54555.1 - 2.7e-14 53.4 10.0 2.7e-14 53.4 10.0 1.4 2 0 0 2 2 2 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 CQR54555.1 - 0.0094 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NAGPA PF09992.9 CQR54556.1 - 1.2e-42 146.0 2.0 1.7e-42 145.5 2.0 1.2 1 0 0 1 1 1 1 Phosphodiester glycosidase DUF4528 PF15031.6 CQR54556.1 - 0.17 11.9 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4528) Trans_reg_C PF00486.28 CQR54557.1 - 1.1e-28 99.1 0.0 2e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR54557.1 - 7.6e-24 84.0 0.0 1.2e-23 83.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 CQR54558.1 - 5.1e-26 91.4 0.0 9.2e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54558.1 - 1.4e-14 53.9 0.1 1.4e-14 53.9 0.1 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 CQR54558.1 - 0.00012 22.0 0.0 0.00024 21.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 CQR54558.1 - 0.0072 16.2 0.0 0.022 14.7 0.0 1.8 1 1 0 1 1 1 1 GHKL domain Rad10 PF03834.14 CQR54558.1 - 0.049 13.7 0.5 0.095 12.7 0.5 1.4 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) ABC_tran PF00005.27 CQR54559.1 - 5.1e-34 117.7 0.0 1.5e-33 116.2 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR54559.1 - 9.3e-09 35.5 0.1 0.0004 20.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 CQR54559.1 - 0.0059 16.4 0.1 0.016 15.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR54559.1 - 0.0075 16.0 0.1 0.021 14.6 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR54559.1 - 0.012 16.1 0.7 0.02 15.4 0.1 1.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR54559.1 - 0.017 14.9 0.1 0.3 10.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 CQR54559.1 - 0.024 14.9 0.2 0.27 11.5 0.1 2.4 1 1 1 2 2 2 0 AAA domain ABC2_membrane_4 PF12730.7 CQR54560.1 - 1.5e-14 54.4 11.1 1.5e-14 54.4 11.1 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR54560.1 - 0.0026 17.1 20.3 0.0069 15.7 20.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR54560.1 - 0.0043 16.6 18.5 0.0043 16.6 18.5 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein HATPase_c PF02518.26 CQR54561.1 - 9.1e-31 106.7 0.0 1.5e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 CQR54561.1 - 2.4e-20 72.6 0.0 3.3e-15 56.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 CQR54561.1 - 4e-20 71.6 0.4 8.6e-20 70.5 0.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 CQR54561.1 - 1.8e-16 60.3 0.0 1.3e-10 41.5 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 CQR54561.1 - 4.3e-12 46.2 0.0 1.2e-10 41.5 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 CQR54561.1 - 1.8e-09 37.4 0.0 0.00091 19.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 CQR54561.1 - 3.2e-06 27.3 0.0 9.7e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 CQR54561.1 - 0.00018 21.7 0.0 0.00038 20.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 CQR54561.1 - 0.014 16.0 0.0 0.027 15.1 0.0 1.5 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.6 CQR54561.1 - 0.019 14.8 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SpoVT_C PF15714.5 CQR54561.1 - 0.051 13.6 0.2 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor DegV PF02645.16 CQR54562.1 - 4.1e-84 282.2 0.0 4.6e-84 282.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein, DegV family COG1307 Dak1_2 PF13684.6 CQR54562.1 - 2.5e-08 33.4 0.0 3e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Dihydroxyacetone kinase family DUF2877 PF11392.8 CQR54562.1 - 0.014 16.1 0.2 3.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) GyrI-like PF06445.15 CQR54563.1 - 4.8e-29 101.7 0.2 6.3e-29 101.3 0.2 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 CQR54563.1 - 4.8e-28 98.2 0.0 7.6e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 Integron-associated effector binding protein HTH_18 PF12833.7 CQR54563.1 - 3.3e-21 75.4 0.6 5.6e-21 74.6 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54563.1 - 4.3e-15 55.4 0.0 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Alpha-amylase PF00128.24 CQR54564.1 - 5e-132 440.5 0.2 6.7e-132 440.1 0.2 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 CQR54564.1 - 4.1e-09 36.4 0.0 9e-09 35.3 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Glyco_hydro_42C PF08533.10 CQR54564.1 - 2.3e-05 24.0 0.1 9.3e-05 22.1 0.0 2.1 3 0 0 3 3 3 1 Beta-galactosidase C-terminal domain DUF3459 PF11941.8 CQR54564.1 - 3.5e-05 24.0 0.0 0.00012 22.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Cyc-maltodext_C PF10438.9 CQR54564.1 - 0.054 13.6 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain hDGE_amylase PF14701.6 CQR54564.1 - 0.068 12.3 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain Glyco_hydro_65m PF03632.15 CQR54565.1 - 7.2e-150 499.1 4.1 9.5e-150 498.7 4.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR54565.1 - 3.1e-67 226.6 0.0 4.7e-67 226.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR54565.1 - 4.5e-13 48.9 0.0 1.3e-12 47.4 0.0 1.9 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain HAD_2 PF13419.6 CQR54566.1 - 5.2e-25 88.6 0.0 6.2e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR54566.1 - 3.9e-17 63.2 0.1 2.2e-16 60.8 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR54566.1 - 8.9e-05 23.0 0.0 0.00013 22.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54566.1 - 0.00056 19.9 0.0 0.0013 18.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 CQR54566.1 - 0.009 16.1 0.1 0.076 13.1 0.1 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Peripla_BP_3 PF13377.6 CQR54567.1 - 1.4e-33 116.6 0.0 2e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR54567.1 - 1e-29 103.9 0.0 1.2e-29 103.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR54567.1 - 2.9e-20 71.8 0.1 2.9e-20 71.8 0.1 2.4 3 0 0 3 3 2 1 Bacterial regulatory proteins, lacI family HTH_3 PF01381.22 CQR54567.1 - 7.9e-08 32.2 0.0 1.9e-06 27.8 0.0 2.4 1 1 1 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 CQR54567.1 - 0.0021 18.3 0.0 0.0075 16.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR54567.1 - 0.0032 17.9 0.1 0.027 14.9 0.0 2.4 2 1 1 3 3 2 1 Cro/C1-type HTH DNA-binding domain HTH_Tnp_ISL3 PF13542.6 CQR54567.1 - 0.0037 16.6 0.1 0.0073 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 CQR54567.1 - 0.006 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 CQR54567.1 - 0.006 16.3 0.1 0.021 14.6 0.1 2.0 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.6 CQR54567.1 - 0.0069 16.1 0.0 0.027 14.3 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.15 CQR54567.1 - 0.017 15.2 0.0 0.062 13.4 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 CQR54567.1 - 0.018 14.8 0.0 0.053 13.3 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain HTH_AraC PF00165.23 CQR54567.1 - 0.025 14.7 0.0 0.091 12.9 0.0 2.0 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_24 PF13412.6 CQR54567.1 - 0.034 13.7 0.0 0.096 12.3 0.0 1.8 2 0 0 2 2 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 CQR54567.1 - 0.042 14.0 0.0 0.62 10.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 CQR54567.1 - 0.046 13.5 0.0 0.17 11.7 0.1 1.9 2 0 0 2 2 1 0 Bacterial regulatory proteins, tetR family HTH_IclR PF09339.10 CQR54567.1 - 0.051 13.4 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Crp PF00325.20 CQR54567.1 - 0.06 13.0 0.6 11 5.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.6 CQR54567.1 - 0.074 13.0 0.1 0.79 9.7 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain SpoIIID PF12116.8 CQR54567.1 - 0.087 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_5 PF01022.20 CQR54567.1 - 0.097 12.6 0.1 3.5 7.6 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR54567.1 - 0.1 12.5 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 MarR family YdaS_antitoxin PF15943.5 CQR54567.1 - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT rRNA_methylase PF06962.12 CQR54567.1 - 0.15 12.1 0.0 0.68 9.9 0.0 2.1 2 0 0 2 2 2 0 Putative rRNA methylase Sigma54_DBD PF04552.13 CQR54567.1 - 0.18 11.5 0.1 0.34 10.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-54, DNA binding domain Alpha-amylase PF00128.24 CQR54568.1 - 2.5e-67 227.9 13.2 6e-51 174.0 5.4 4.2 2 2 0 3 3 3 3 Alpha amylase, catalytic domain PUD PF03714.14 CQR54568.1 - 6.4e-53 177.6 10.2 1.1e-18 67.8 0.0 4.8 3 0 0 3 3 3 3 Bacterial pullanase-associated domain SLH PF00395.20 CQR54568.1 - 3.6e-34 116.5 11.4 5.2e-12 45.6 0.0 5.3 5 0 0 5 5 5 3 S-layer homology domain SpuA_C PF18033.1 CQR54568.1 - 1.4e-28 98.8 0.2 4.8e-28 97.0 0.2 2.1 1 0 0 1 1 1 1 SpuA C-terminal CBM_48 PF02922.18 CQR54568.1 - 1.2e-11 44.8 3.0 8.5e-08 32.4 0.1 4.7 6 0 0 6 6 4 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Big_2 PF02368.18 CQR54568.1 - 3e-06 27.0 6.6 3e-06 27.0 6.6 3.6 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 2) Malt_amylase_C PF16657.5 CQR54568.1 - 1.5e-05 25.0 0.0 0.00043 20.3 0.0 3.1 3 0 0 3 3 3 1 Maltogenic Amylase, C-terminal domain DUF1966 PF09260.11 CQR54568.1 - 0.00041 20.6 0.0 0.004 17.4 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1966) Big_3 PF07523.12 CQR54568.1 - 0.0018 18.5 11.4 0.023 15.0 1.9 5.0 4 1 0 4 4 4 1 Bacterial Ig-like domain (group 3) AMPK1_CBM PF16561.5 CQR54568.1 - 0.0021 18.3 0.0 2.5 8.4 0.0 3.7 3 0 0 3 3 3 1 Glycogen recognition site of AMP-activated protein kinase SusF_SusE PF16411.5 CQR54568.1 - 0.0021 18.6 2.1 0.0058 17.1 0.0 2.9 3 0 0 3 3 3 1 Outer membrane protein SusF_SusE CBM26 PF16738.5 CQR54568.1 - 0.019 15.2 0.2 0.019 15.2 0.2 4.8 5 0 0 5 5 5 0 Starch-binding module 26 DUF3372 PF11852.8 CQR54568.1 - 0.039 13.4 0.1 0.89 9.0 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3372) DUF871 PF05913.11 CQR54568.1 - 0.24 10.6 0.1 16 4.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF871) Alpha-amylase PF00128.24 CQR54569.1 - 1.4e-80 271.4 0.0 2.1e-80 270.8 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 CQR54569.1 - 2.2e-36 124.6 0.1 4.9e-36 123.5 0.1 1.6 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain Malt_amylase_C PF16657.5 CQR54569.1 - 3.7e-13 49.4 0.0 7.5e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 CQR54569.1 - 1.1e-06 28.9 0.0 2.2e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) GHL6 PF14871.6 CQR54569.1 - 0.066 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 SBP_bac_8 PF13416.6 CQR54570.1 - 5.8e-43 147.7 8.7 1e-42 146.9 8.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Cytochrom_C_2 PF01322.20 CQR54570.1 - 0.15 12.9 0.2 0.15 12.9 0.2 2.5 3 0 0 3 3 3 0 Cytochrome C' BPD_transp_1 PF00528.22 CQR54571.1 - 7.4e-19 68.2 15.0 7.4e-19 68.2 15.0 3.0 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component KASH PF10541.9 CQR54571.1 - 0.008 16.4 0.0 0.063 13.5 0.0 2.5 2 0 0 2 2 2 1 Nuclear envelope localisation domain TM_PBP2_N PF16296.5 CQR54571.1 - 0.029 14.5 0.6 0.088 12.9 0.6 1.8 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters DUF202 PF02656.15 CQR54571.1 - 9.2 6.8 8.4 2.8 8.5 0.1 3.9 2 1 1 3 3 3 0 Domain of unknown function (DUF202) BPD_transp_1 PF00528.22 CQR54572.1 - 1.9e-16 60.3 17.2 1.9e-16 60.3 17.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Cytomega_US3 PF05963.11 CQR54572.1 - 0.69 9.5 4.5 0.14 11.8 0.3 1.9 2 0 0 2 2 2 0 Cytomegalovirus US3 protein MCPsignal PF00015.21 CQR54573.1 - 7.8e-25 87.7 11.7 7.8e-25 87.7 11.7 3.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR54573.1 - 5.5e-20 72.2 2.5 6.1e-20 72.1 0.1 2.2 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR54573.1 - 1.5e-10 41.3 2.8 2.9e-10 40.4 0.0 2.9 3 0 0 3 3 3 1 HAMP domain ArlS_N PF18719.1 CQR54573.1 - 0.0047 17.1 0.6 0.049 13.8 0.0 2.9 3 0 0 3 3 3 1 ArlS sensor domain Rep-A_N PF04057.12 CQR54573.1 - 0.063 13.3 1.0 0.18 11.8 1.0 1.8 1 0 0 1 1 1 0 Replication factor-A protein 1, N-terminal domain Sec34 PF04136.15 CQR54573.1 - 1 9.3 13.5 0.42 10.5 1.5 4.2 3 2 1 4 4 4 0 Sec34-like family Spectrin PF00435.21 CQR54573.1 - 4 8.0 6.6 4.5 7.8 1.0 3.0 2 0 0 2 2 2 0 Spectrin repeat APG6_N PF17675.1 CQR54573.1 - 6.4 7.3 8.9 0.35 11.4 0.6 2.5 2 0 0 2 2 2 0 Apg6 coiled-coil region Kinocilin PF15033.6 CQR54573.1 - 6.7 6.4 9.6 14 5.4 0.1 3.9 5 0 0 5 5 5 0 Kinocilin protein HTH_18 PF12833.7 CQR54574.1 - 1.5e-18 66.8 1.3 2.6e-18 66.1 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54574.1 - 1.8e-17 63.0 0.0 1.9e-07 31.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR54574.1 - 1.6e-09 37.8 0.0 3.1e-09 36.8 0.0 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR54574.1 - 4.9e-09 35.8 0.0 1.1e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Cupin domain ARD PF03079.14 CQR54574.1 - 5.3e-06 26.7 0.0 9.2e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 ARD/ARD' family 3-HAO PF06052.12 CQR54574.1 - 0.0028 17.3 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_6 PF12852.7 CQR54574.1 - 0.0041 16.9 0.0 0.0073 16.0 0.0 1.6 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.12 CQR54574.1 - 0.012 15.8 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Ectoine synthase Cupin_1 PF00190.22 CQR54574.1 - 0.014 15.0 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Cupin HTH_23 PF13384.6 CQR54574.1 - 0.046 13.5 0.1 1.4 8.9 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 CQR54574.1 - 0.096 12.1 0.0 7.1 6.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Rrf2 PF02082.20 CQR54574.1 - 0.11 12.9 0.0 0.9 9.9 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator Cupin_3 PF05899.12 CQR54574.1 - 0.13 12.0 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Sigma70_r3 PF04539.16 CQR54574.1 - 0.14 12.3 0.0 3.3 7.9 0.0 2.6 2 0 0 2 2 2 0 Sigma-70 region 3 Glyco_hydro_4C PF11975.8 CQR54575.1 - 9.1e-56 189.2 0.0 1.6e-55 188.4 0.0 1.4 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 CQR54575.1 - 3.4e-48 163.6 0.1 5.6e-48 162.9 0.1 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase F420_oxidored PF03807.17 CQR54575.1 - 0.0086 16.6 0.0 0.02 15.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 CQR54575.1 - 0.062 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.23 CQR54575.1 - 0.082 13.0 0.0 19 5.3 0.0 2.4 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF444 PF04285.12 CQR54577.1 - 2.2e-106 356.5 14.9 5.1e-71 240.0 1.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF444) DUF11 PF01345.18 CQR54578.1 - 1.1e-30 105.7 4.1 2.5e-09 37.3 0.3 4.7 4 1 0 4 4 4 4 Domain of unknown function DUF11 CARDB PF07705.11 CQR54578.1 - 1.4e-07 31.6 0.8 0.34 11.2 0.0 5.8 3 2 0 4 4 4 2 CARDB NPCBM_assoc PF10633.9 CQR54578.1 - 0.00037 20.7 3.0 7.3 6.9 0.0 5.9 6 0 0 6 6 6 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 CQR54579.1 - 6.4e-167 542.4 209.5 2.7e-13 50.0 15.1 16.5 16 0 0 16 16 16 15 Domain of unknown function DUF11 bMG10 PF17973.1 CQR54579.1 - 1.4e-32 112.6 40.1 0.04 14.1 0.1 15.1 15 1 1 16 16 16 12 Bacterial Alpha-2-macroglobulin MG10 domain Collagen_bind PF05737.12 CQR54579.1 - 5.3e-14 52.5 10.5 0.54 10.4 0.0 12.7 15 2 1 16 16 16 3 Collagen binding domain CARDB PF07705.11 CQR54579.1 - 7e-10 39.1 103.9 0.04 14.2 1.4 17.1 15 5 0 15 15 15 10 CARDB GramPos_pilinBB PF16569.5 CQR54579.1 - 2.3e-07 31.6 3.8 0.41 11.5 0.1 7.8 7 1 0 7 7 7 1 Gram-positive pilin backbone subunit 2, Cna-B-like domain DUF4139 PF13598.6 CQR54579.1 - 0.00042 20.1 22.2 0.93 9.2 0.1 8.9 11 1 0 11 11 11 3 Domain of unknown function (DUF4139) Integrin_alpha2 PF08441.12 CQR54579.1 - 0.7 8.7 10.8 2 7.2 0.1 5.6 8 0 0 8 8 8 0 Integrin alpha Methyltransf_11 PF08241.12 CQR54580.1 - 1.2e-05 25.9 0.3 0.0013 19.3 0.0 2.4 1 1 1 2 2 2 2 Methyltransferase domain MASE2 PF05230.11 CQR54580.1 - 0.017 15.1 0.1 0.032 14.3 0.1 1.4 1 0 0 1 1 1 0 MASE2 domain Methyltransf_25 PF13649.6 CQR54580.1 - 0.092 13.5 0.4 11 6.8 0.0 2.5 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 CQR54580.1 - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain OAD_gamma PF04277.13 CQR54581.1 - 0.019 15.5 0.4 2.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Phage_holin_3_6 PF07332.11 CQR54582.1 - 0.001 19.1 1.6 0.001 19.1 1.6 2.1 1 1 1 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2975 PF11188.8 CQR54582.1 - 0.0014 18.5 1.1 0.0017 18.2 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2975) DUF5381 PF17353.2 CQR54582.1 - 0.75 9.5 9.3 0.17 11.6 6.2 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5381) DUF5518 PF17647.1 CQR54582.1 - 1.8 8.7 22.2 0.6 10.3 10.8 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5518) Tetraspanin PF00335.20 CQR54582.1 - 2.4 7.8 15.1 3.5 7.3 15.1 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF4690 PF15756.5 CQR54582.1 - 3.6 8.3 0.0 3.6 8.3 0.0 2.7 3 0 0 3 3 3 0 Small Novel Rich in Cartilage DUF423 PF04241.15 CQR54583.1 - 2.2e-31 107.9 1.9 3.4e-31 107.3 1.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF423) DUF3917 PF13055.6 CQR54583.1 - 0.018 15.5 0.3 0.034 14.6 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) TrbC PF04956.13 CQR54583.1 - 6.1 7.1 8.0 0.57 10.4 1.1 2.3 2 1 1 3 3 3 0 TrbC/VIRB2 family YolD PF08863.10 CQR54584.1 - 0.11 12.6 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 YolD-like protein DUF1805 PF08827.11 CQR54585.1 - 3.9e-22 78.3 0.2 5.1e-22 78.0 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Ferritin PF00210.24 CQR54586.1 - 4e-31 107.9 1.7 4.5e-31 107.7 1.7 1.0 1 0 0 1 1 1 1 Ferritin-like domain ABC_tran PF00005.27 CQR54587.1 - 2e-21 77.0 0.1 2.6e-21 76.6 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR54587.1 - 4.3e-09 36.1 0.4 3.1e-08 33.3 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR54587.1 - 7.9e-07 29.2 0.1 0.036 13.9 0.1 2.3 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 CQR54587.1 - 1.2e-05 25.8 0.7 0.00042 20.7 0.7 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 CQR54587.1 - 0.00015 22.0 0.2 0.0093 16.2 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR54587.1 - 0.00095 19.4 0.2 0.0049 17.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR54587.1 - 0.0014 18.3 0.3 0.0029 17.3 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR54587.1 - 0.0016 18.3 0.1 0.0034 17.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 CQR54587.1 - 0.0021 18.6 0.9 0.049 14.2 0.9 2.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR54587.1 - 0.0053 17.3 1.6 0.02 15.4 0.5 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 CQR54587.1 - 0.0082 15.7 1.2 0.011 15.3 0.2 1.9 2 1 0 2 2 2 1 AAA domain AAA_27 PF13514.6 CQR54587.1 - 0.0098 15.5 0.1 0.018 14.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR54587.1 - 0.013 15.6 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 CQR54587.1 - 0.018 15.0 0.1 3 7.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR54587.1 - 0.035 14.5 0.0 0.051 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 CQR54587.1 - 0.044 13.5 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR54587.1 - 0.05 13.3 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 CQR54587.1 - 0.073 13.1 0.1 2 8.5 0.0 2.3 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR54587.1 - 0.074 12.8 0.5 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 CQR54587.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.6 CQR54587.1 - 0.12 11.0 0.1 0.21 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 CQR54588.1 - 1.5e-64 217.7 1.5 2e-64 217.3 1.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Sipho_tail PF05709.11 CQR54588.1 - 0.062 12.7 0.0 0.11 11.9 0.0 1.4 1 1 0 1 1 1 0 Phage tail protein Aminotran_5 PF00266.19 CQR54589.1 - 3e-158 526.6 0.1 3.4e-158 526.4 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 CQR54589.1 - 1.1e-11 44.6 0.1 2e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR54589.1 - 8e-10 38.6 0.5 7.9e-09 35.3 0.6 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 CQR54589.1 - 2.8e-09 36.0 0.8 1.6e-07 30.2 0.3 2.1 1 1 1 2 2 2 2 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 CQR54589.1 - 5.5e-05 22.6 0.0 7.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Glyco_trans_4_4 PF13579.6 CQR54589.1 - 0.017 15.6 0.1 0.028 14.8 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Pyridoxal_deC PF00282.19 CQR54589.1 - 0.018 13.8 0.1 0.084 11.6 0.1 1.8 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.16 CQR54590.1 - 3.2e-30 104.9 0.1 1.2e-29 103.0 0.1 1.8 1 1 0 1 1 1 1 NifU-like N terminal domain UPF0051 PF01458.17 CQR54591.1 - 4.3e-72 242.3 0.5 5.7e-72 241.9 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Bromo_TP PF07524.13 CQR54592.1 - 0.097 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Bromodomain associated SNARE_assoc PF09335.11 CQR54593.1 - 1.4e-08 35.3 0.6 1.4e-08 35.3 0.6 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF1294 PF06961.13 CQR54593.1 - 0.49 10.7 1.9 1.4 9.2 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) HATPase_c PF02518.26 CQR54594.1 - 7.6e-25 87.6 0.1 1.8e-24 86.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54594.1 - 5.4e-13 48.8 0.0 1.3e-12 47.5 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR54594.1 - 8.3e-13 48.5 0.1 1.8e-12 47.5 0.1 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR54594.1 - 0.0016 18.3 0.0 0.004 17.0 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 CQR54594.1 - 0.0077 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR54594.1 - 0.0093 15.8 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADH_zinc_N_2 PF13602.6 CQR54594.1 - 0.15 13.1 0.1 5.9 7.9 0.0 2.9 4 0 0 4 4 4 0 Zinc-binding dehydrogenase Trans_reg_C PF00486.28 CQR54595.1 - 6.2e-28 96.7 0.0 1.2e-27 95.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR54595.1 - 3.6e-27 94.8 0.0 5.1e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain ABC_tran PF00005.27 CQR54596.1 - 1.1e-27 97.2 0.0 4.3e-27 95.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR54596.1 - 2.7e-12 47.1 2.3 7.4e-06 26.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR54596.1 - 0.0021 18.6 0.2 0.0036 17.8 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR54596.1 - 0.0041 16.8 0.2 0.0071 16.1 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 CQR54596.1 - 0.047 13.6 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_15 PF13175.6 CQR54596.1 - 0.048 13.4 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 CQR54596.1 - 0.049 14.0 0.0 0.076 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR54596.1 - 0.069 13.1 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 CQR54596.1 - 0.08 13.4 0.0 0.26 11.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 CQR54596.1 - 0.082 12.3 0.5 6.2 6.2 0.2 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 CQR54596.1 - 0.15 11.7 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 CQR54596.1 - 0.18 11.5 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 CQR54597.1 - 1.7e-11 44.0 26.0 3.2e-11 43.1 26.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR54597.1 - 7.2e-10 39.1 18.3 7.2e-10 39.1 18.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR54597.1 - 4.2 6.9 26.8 78 2.7 26.8 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF347 PF03988.12 CQR54598.1 - 2.4e-59 197.3 41.2 1.6e-17 63.4 0.9 4.0 4 0 0 4 4 4 4 Repeat of Unknown Function (DUF347) DUF1148 PF06618.11 CQR54598.1 - 0.064 13.4 1.6 1.2 9.4 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1148) Phage_holin_3_7 PF05449.11 CQR54598.1 - 3.2 7.8 11.5 2.1 8.4 0.7 3.3 3 1 0 3 3 3 0 Putative 3TM holin, Phage_holin_3 BacA PF02673.18 CQR54600.1 - 7.8e-82 274.8 16.4 9e-82 274.6 16.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Phosphoesterase PF04185.14 CQR54601.1 - 8.1e-34 117.4 7.2 1.3e-32 113.4 1.1 2.9 1 1 1 2 2 2 2 Phosphoesterase family Sulfatase PF00884.23 CQR54601.1 - 0.00039 19.9 0.1 0.0005 19.5 0.1 1.2 1 0 0 1 1 1 1 Sulfatase ABC_tran PF00005.27 CQR54602.1 - 2.3e-27 96.2 0.0 3e-27 95.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54602.1 - 7.4e-07 29.3 0.8 0.011 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR54602.1 - 0.00029 20.5 0.0 0.00094 18.9 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR54602.1 - 0.0054 16.2 0.0 0.09 12.2 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR54602.1 - 0.0063 16.9 0.2 0.011 16.1 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR54602.1 - 0.01 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 CQR54602.1 - 0.01 16.0 0.3 0.57 10.4 0.3 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 CQR54602.1 - 0.013 15.8 1.1 0.18 12.1 1.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR54602.1 - 0.017 15.4 0.0 0.039 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 CQR54602.1 - 0.019 14.0 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 CQR54602.1 - 0.02 14.8 0.1 0.079 12.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 CQR54602.1 - 0.076 13.4 0.0 10 6.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 CQR54602.1 - 0.085 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR54602.1 - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase UPF0014 PF03649.13 CQR54603.1 - 6.6e-77 258.1 27.6 7.5e-77 257.9 27.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) SPC12 PF06645.13 CQR54603.1 - 9.6 6.4 10.3 0.25 11.5 0.4 2.9 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2156 PF09924.9 CQR54604.1 - 1.3e-87 293.6 0.0 2e-87 293.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) LPG_synthase_TM PF03706.13 CQR54604.1 - 3e-19 69.7 32.7 3e-19 69.7 32.7 3.2 2 1 0 3 3 3 1 Lysylphosphatidylglycerol synthase TM region Herpes_TAF50 PF03326.13 CQR54604.1 - 0.25 10.0 0.0 0.37 9.4 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus transcription activation factor (transactivator) Acetyltransf_1 PF00583.25 CQR54605.1 - 1.6e-17 63.8 0.0 2.2e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR54605.1 - 1.7e-12 47.6 0.2 2.6e-12 47.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR54605.1 - 9.6e-12 45.0 0.5 3.4e-11 43.2 0.5 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR54605.1 - 5.3e-06 26.5 0.0 9.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 CQR54605.1 - 1.3e-05 25.4 0.0 1.6e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR54605.1 - 6.8e-05 22.8 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 CQR54605.1 - 0.00016 21.8 0.0 0.00033 20.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR54605.1 - 0.00085 20.0 0.0 0.00099 19.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR54605.1 - 0.0016 18.5 0.0 0.01 15.9 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain TrkA_C PF02080.21 CQR54605.1 - 0.01 15.7 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-C domain Acetyltransf_15 PF17013.5 CQR54605.1 - 0.042 13.3 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 Putative acetyl-transferase PanZ PF12568.8 CQR54605.1 - 0.059 13.1 0.0 0.075 12.8 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 CQR54606.1 - 5.4e-30 104.9 0.0 6.3e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR54606.1 - 7e-06 26.3 0.0 9.1e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family ABC_membrane PF00664.23 CQR54608.1 - 5.3e-53 180.4 12.6 7.1e-53 180.0 12.6 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR54608.1 - 1.3e-32 113.2 0.0 2.7e-32 112.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.12 CQR54608.1 - 0.001 18.4 0.0 0.0022 17.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin SMC_N PF02463.19 CQR54608.1 - 0.0075 15.7 0.2 0.042 13.3 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 CQR54608.1 - 0.037 14.5 1.5 1.6 9.2 0.1 3.3 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 CQR54608.1 - 0.067 12.9 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR54608.1 - 0.16 12.5 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_membrane PF00664.23 CQR54609.1 - 2.1e-49 168.7 12.9 2.7e-49 168.3 12.9 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR54609.1 - 7.3e-34 117.2 0.7 1.1e-33 116.6 0.1 1.7 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 CQR54609.1 - 6e-06 25.9 0.3 0.0025 17.3 0.0 2.5 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR54609.1 - 3.8e-05 24.0 0.3 0.0004 20.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR54609.1 - 0.00023 21.6 0.3 0.0005 20.5 0.3 1.5 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR54609.1 - 0.00088 19.2 0.1 0.0018 18.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase ABC_membrane_3 PF13748.6 CQR54609.1 - 0.0012 18.1 9.2 0.0034 16.7 9.2 1.7 1 1 0 1 1 1 1 ABC transporter transmembrane region AAA_15 PF13175.6 CQR54609.1 - 0.0022 17.7 0.2 0.006 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR54609.1 - 0.0023 17.6 0.3 0.0075 16.0 0.3 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 CQR54609.1 - 0.0029 16.7 0.0 0.0064 15.6 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.23 CQR54609.1 - 0.0037 17.3 0.0 0.01 15.9 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_21 PF13304.6 CQR54609.1 - 0.0049 16.7 3.0 0.48 10.2 0.5 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 CQR54609.1 - 0.0098 16.3 0.3 0.39 11.1 0.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 CQR54609.1 - 0.011 15.0 0.1 0.027 13.7 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.29 CQR54609.1 - 0.017 14.9 0.2 0.046 13.5 0.2 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF87 PF01935.17 CQR54609.1 - 0.026 14.6 1.8 0.092 12.8 0.4 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_7 PF12775.7 CQR54609.1 - 0.035 13.6 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 CQR54609.1 - 0.084 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit Herpes_LMP1 PF05297.11 CQR54609.1 - 0.086 12.0 5.6 0.14 11.4 5.6 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) CitMHS PF03600.16 CQR54609.1 - 0.15 11.2 4.3 0.24 10.6 4.3 1.2 1 0 0 1 1 1 0 Citrate transporter SbcCD_C PF13558.6 CQR54609.1 - 0.16 12.2 0.2 0.91 9.8 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 CQR54609.1 - 0.4 11.2 5.6 0.081 13.4 1.5 2.1 2 1 0 2 2 1 0 AAA domain Glyoxalase PF00903.25 CQR54610.1 - 0.078 13.2 0.0 0.092 12.9 0.0 1.0 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF896 PF05979.12 CQR54611.1 - 0.04 13.8 0.1 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) PRD PF00874.20 CQR54612.1 - 3.3e-41 139.5 7.9 3.9e-21 75.2 0.1 2.2 2 0 0 2 2 2 2 PRD domain CAT_RBD PF03123.15 CQR54612.1 - 3.6e-21 74.9 5.0 3.9e-21 74.7 3.7 1.8 2 0 0 2 2 2 1 CAT RNA binding domain Endonuc_subdom PF09062.10 CQR54612.1 - 0.035 14.9 1.6 0.11 13.3 0.4 2.2 1 1 0 2 2 2 0 PI-PfuI Endonuclease subdomain PTS_EIIA_1 PF00358.20 CQR54613.1 - 2.1e-47 160.1 1.8 4e-47 159.1 0.3 2.3 2 0 0 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIC PF02378.18 CQR54613.1 - 3.5e-33 115.0 32.6 3.5e-33 115.0 32.6 1.9 2 0 0 2 2 2 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR54613.1 - 2.7e-14 52.4 0.1 5.8e-14 51.3 0.1 1.6 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl_2 PF13533.6 CQR54613.1 - 0.0029 17.4 0.8 0.015 15.1 0.3 2.3 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 CQR54613.1 - 0.0046 16.8 0.1 0.18 11.7 0.0 2.9 3 0 0 3 3 3 1 Biotin-requiring enzyme Glyco_hydro_1 PF00232.18 CQR54614.1 - 5.8e-133 443.6 8.5 5.8e-132 440.3 8.5 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 CQR54614.1 - 0.00024 20.6 0.0 0.00044 19.8 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) HD PF01966.22 CQR54615.1 - 2.3e-12 47.2 0.0 4.2e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR54615.1 - 1.6e-09 37.9 0.1 3.3e-09 36.8 0.1 1.6 1 0 0 1 1 1 1 HD domain MoaE PF02391.17 CQR54616.1 - 1e-30 106.3 0.2 1.7e-30 105.6 0.2 1.3 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 CQR54616.1 - 2e-11 44.3 0.0 2e-09 38.0 0.0 2.3 2 0 0 2 2 2 2 ThiS family 5_nucleotid_C PF02872.18 CQR54617.1 - 9e-20 71.5 0.0 1.5e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 CQR54617.1 - 1.3e-06 29.0 0.0 2.7e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase BacA PF02673.18 CQR54618.1 - 6.2e-74 248.9 16.9 7.2e-74 248.7 16.9 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA MNHE PF01899.16 CQR54618.1 - 0.14 12.0 10.6 0.98 9.2 2.4 2.6 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit PDR_CDR PF06422.12 CQR54618.1 - 0.35 10.8 1.7 0.99 9.4 1.7 1.9 1 0 0 1 1 1 0 CDR ABC transporter Peptidase_M48_N PF16491.5 CQR54618.1 - 0.62 9.9 13.0 0.13 12.2 6.8 2.5 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices HD PF01966.22 CQR54619.1 - 4.5e-19 68.9 0.2 8.5e-19 68.0 0.2 1.5 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR54619.1 - 1.1e-13 51.2 0.3 1.9e-13 50.5 0.3 1.4 1 0 0 1 1 1 1 HD domain LANC_like PF05147.13 CQR54619.1 - 0.12 10.9 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein YfkB PF08756.10 CQR54620.1 - 1.2e-71 239.4 0.0 1.8e-71 238.8 0.0 1.3 1 0 0 1 1 1 1 YfkB-like domain Radical_SAM PF04055.21 CQR54620.1 - 2.7e-11 44.2 0.0 4.9e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR54620.1 - 1.5e-07 31.8 0.0 3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR54620.1 - 1.4e-05 25.2 0.0 3.6e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF21 PF01595.20 CQR54621.1 - 2.3e-45 154.5 6.2 3.2e-45 154.0 6.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 CQR54621.1 - 2.9e-15 56.0 1.5 5.7e-15 55.1 1.5 1.5 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 CQR54621.1 - 1.7e-13 50.8 0.6 6.9e-06 26.4 0.1 2.9 2 0 0 2 2 2 2 CBS domain DUF2441 PF10386.9 CQR54624.1 - 6e-14 52.2 0.6 8.4e-14 51.8 0.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2441) ENT PF03735.14 CQR54624.1 - 0.049 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 ENT domain Pkinase PF00069.25 CQR54625.1 - 1.5e-15 57.2 0.4 2.4e-15 56.6 0.4 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 CQR54625.1 - 1.1e-07 31.5 0.0 1.6e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 CQR54625.1 - 6e-07 28.6 0.0 8.8e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase RIO1 PF01163.22 CQR54625.1 - 1.2e-05 25.0 0.1 2e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 CQR54625.1 - 2e-05 24.7 0.0 2.8e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 CQR54625.1 - 7.8e-05 22.4 2.3 0.00019 21.1 2.2 1.6 1 1 0 1 1 1 1 Choline/ethanolamine kinase Kdo PF06293.14 CQR54625.1 - 0.00019 20.9 0.3 0.00033 20.1 0.3 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Haspin_kinase PF12330.8 CQR54625.1 - 0.0066 15.4 0.1 0.012 14.6 0.1 1.5 1 0 0 1 1 1 1 Haspin like kinase domain PcfK PF14058.6 CQR54626.1 - 0.031 14.5 0.2 0.034 14.4 0.2 1.3 1 1 0 1 1 1 0 PcfK-like protein Glyco_hydro_3 PF00933.21 CQR54629.1 - 0.033 13.6 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain SAM_3 PF18016.1 CQR54629.1 - 0.25 11.2 3.5 0.46 10.3 0.0 2.6 3 0 0 3 3 3 0 SAM domain (Sterile alpha motif) PTS_EIIC PF02378.18 CQR54630.1 - 1.4e-63 214.9 35.2 2.3e-63 214.2 35.2 1.3 1 0 0 1 1 1 1 Phosphotransferase system, EIIC Frtz PF11768.8 CQR54630.1 - 0.17 10.2 0.1 0.34 9.2 0.1 1.4 1 0 0 1 1 1 0 WD repeat-containing and planar cell polarity effector protein Fritz Glyco_hydro_125 PF06824.11 CQR54631.1 - 1.2e-143 478.9 0.1 1.5e-143 478.7 0.1 1.0 1 0 0 1 1 1 1 Metal-independent alpha-mannosidase (GH125) Dmd PF17587.2 CQR54631.1 - 0.034 14.5 0.0 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Discriminator of mRNA degradation AAA_25 PF13481.6 CQR54631.1 - 0.18 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain WHH PF14414.6 CQR54631.1 - 0.46 10.4 1.7 0.97 9.3 0.0 2.4 3 0 0 3 3 3 0 A nuclease of the HNH/ENDO VII superfamily with conserved WHH GntR PF00392.21 CQR54632.1 - 2.2e-19 68.9 0.0 6.9e-19 67.3 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Peripla_BP_3 PF13377.6 CQR54632.1 - 2.3e-15 57.3 0.0 4.2e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR54632.1 - 6.3e-11 42.2 0.0 5.2e-10 39.2 0.0 2.3 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR54632.1 - 1.7e-10 40.9 0.0 2.6e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_DeoR PF08220.12 CQR54632.1 - 0.051 13.3 0.0 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR54632.1 - 0.092 13.1 0.0 0.38 11.1 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PTS_EIIA_2 PF00359.22 CQR54633.1 - 7.5e-29 100.5 0.0 2.2e-28 99.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PRD PF00874.20 CQR54633.1 - 3.4e-28 97.8 0.3 1.3e-18 67.1 0.0 3.0 3 0 0 3 3 3 2 PRD domain Mga PF05043.13 CQR54633.1 - 1.8e-19 70.1 1.8 1.9e-15 57.2 0.0 2.9 3 0 0 3 3 3 2 Mga helix-turn-helix domain HTH_11 PF08279.12 CQR54633.1 - 4.9e-17 61.6 2.3 6e-10 38.9 0.5 2.7 2 0 0 2 2 2 2 HTH domain HTH_DeoR PF08220.12 CQR54633.1 - 4.3e-05 23.2 1.8 0.078 12.7 0.2 2.6 2 0 0 2 2 2 2 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 CQR54633.1 - 0.0015 18.3 0.1 0.053 13.3 0.0 2.8 2 0 0 2 2 2 1 HTH DNA binding domain PuR_N PF09182.10 CQR54633.1 - 0.0098 15.8 0.0 1.9 8.5 0.0 2.6 2 0 0 2 2 2 1 Bacterial purine repressor, N-terminal GerE PF00196.19 CQR54633.1 - 0.017 14.6 0.2 0.087 12.4 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.19 CQR54633.1 - 0.06 13.5 0.0 0.18 12.0 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.11 CQR54633.1 - 0.084 12.9 0.7 4.1 7.5 0.1 2.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 CQR54633.1 - 0.1 12.6 0.1 1 9.3 0.0 2.6 2 0 0 2 2 2 0 MarR family PTS_IIA PF02255.16 CQR54634.1 - 5.4e-34 116.1 11.8 6.1e-34 115.9 11.8 1.0 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIA subunit RPN7 PF10602.9 CQR54634.1 - 0.02 14.6 4.0 0.16 11.7 0.7 2.0 1 1 1 2 2 2 0 26S proteasome subunit RPN7 PTS_IIB PF02302.17 CQR54635.1 - 3.5e-22 78.9 0.4 4e-22 78.7 0.4 1.0 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit GAGBD PF16828.5 CQR54635.1 - 0.071 13.2 0.0 0.082 13.0 0.0 1.1 1 0 0 1 1 1 0 GAG-binding domain on surface antigen PTS-HPr PF00381.19 CQR54636.1 - 7.6e-22 77.4 0.1 8.3e-22 77.2 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site CotJA PF11007.8 CQR54637.1 - 1.9e-09 37.2 2.0 1.9e-09 37.2 2.0 1.8 2 0 0 2 2 2 1 Spore coat associated protein JA (CotJA) CotJB PF12652.7 CQR54638.1 - 2.5e-27 94.9 2.9 2.9e-27 94.7 2.9 1.0 1 0 0 1 1 1 1 CotJB protein Mn_catalase PF05067.12 CQR54639.1 - 2.5e-69 233.4 0.5 5.9e-69 232.2 0.5 1.5 1 1 0 1 1 1 1 Manganese containing catalase Rubrerythrin PF02915.17 CQR54639.1 - 0.01 16.2 0.5 0.23 11.9 0.5 2.2 1 1 0 1 1 1 0 Rubrerythrin TetR_C_8 PF14278.6 CQR54641.1 - 1.4e-16 60.5 0.9 3.1e-16 59.4 0.1 1.9 2 1 1 3 3 3 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR54641.1 - 6.6e-12 45.0 0.0 1.1e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR54641.1 - 0.0031 17.7 0.2 0.0074 16.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_11 PF08279.12 CQR54641.1 - 0.0058 16.6 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_40 PF14493.6 CQR54641.1 - 0.01 16.3 0.0 0.025 15.0 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 CQR54641.1 - 0.026 14.7 0.5 0.066 13.4 0.5 1.7 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF4334 PF14232.6 CQR54641.1 - 0.039 13.9 0.0 0.075 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4334) HTH_24 PF13412.6 CQR54641.1 - 0.061 12.9 0.6 0.36 10.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 CQR54641.1 - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_7 PF02796.15 CQR54641.1 - 0.14 12.3 0.0 0.4 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 CQR54641.1 - 0.16 11.6 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 CQR54641.1 - 0.16 11.7 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 adh_short PF00106.25 CQR54642.1 - 2e-57 193.8 1.5 2.3e-57 193.6 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54642.1 - 2.3e-43 148.4 1.7 2.9e-43 148.1 1.7 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR54642.1 - 3.5e-16 59.6 1.0 4.5e-16 59.3 1.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 CQR54642.1 - 9.8e-07 28.8 0.6 1.4e-06 28.4 0.6 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 CQR54642.1 - 0.00015 22.0 0.1 0.00021 21.5 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 CQR54642.1 - 0.00018 21.0 0.6 0.00085 18.9 0.6 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 CQR54642.1 - 0.0035 16.5 0.9 0.0052 16.0 0.9 1.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein THF_DHG_CYH_C PF02882.19 CQR54642.1 - 0.0052 16.1 0.3 0.0079 15.5 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 CQR54642.1 - 0.021 14.9 0.8 0.04 14.0 0.8 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 CQR54642.1 - 0.024 14.5 0.8 0.061 13.2 0.5 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 CQR54642.1 - 0.042 13.5 0.1 0.083 12.5 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 CQR54642.1 - 0.049 13.0 0.4 0.078 12.3 0.4 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.15 CQR54642.1 - 0.22 11.4 2.0 0.21 11.4 0.7 1.6 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein CMD PF02627.20 CQR54643.1 - 9.1e-20 70.5 0.0 1e-18 67.1 0.0 2.0 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Sigma70_r2 PF04542.14 CQR54644.1 - 5e-12 45.4 0.0 1.4e-11 44.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR54644.1 - 1.6e-10 40.5 0.1 3e-10 39.6 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR54644.1 - 0.021 14.3 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 SOTI PF17079.5 CQR54644.1 - 0.17 12.3 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 Male-specific protein scotti Inhibitor_I36 PF03995.13 CQR54645.1 - 0.089 12.7 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Peptidase inhibitor family I36 RibD_C PF01872.17 CQR54646.1 - 3e-15 56.6 0.0 4.1e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain Mn_catalase PF05067.12 CQR54647.1 - 6.9e-28 97.4 0.2 7.2e-28 97.4 0.2 1.0 1 0 0 1 1 1 1 Manganese containing catalase ACR_tran PF00873.19 CQR54648.1 - 5.3e-175 583.9 39.1 1.2e-174 582.7 39.1 1.5 1 1 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 CQR54648.1 - 4.1e-13 49.1 37.3 1.2e-07 31.3 12.7 2.8 3 0 0 3 3 3 2 Protein export membrane protein DUF211 PF02680.14 CQR54648.1 - 0.12 12.6 2.9 7.8 6.7 0.1 3.8 3 0 0 3 3 3 0 Uncharacterized ArCR, COG1888 FeS_assembly_P PF01883.19 CQR54648.1 - 1.2 9.3 4.4 3 8.1 0.2 3.7 4 1 1 5 5 5 0 Iron-sulfur cluster assembly protein SNARE_assoc PF09335.11 CQR54649.1 - 3.4e-21 76.0 6.5 3.4e-21 76.0 6.5 3.8 3 2 1 5 5 5 1 SNARE associated Golgi protein PAP2 PF01569.21 CQR54649.1 - 8.3e-09 35.3 6.2 8.3e-09 35.3 6.2 3.5 2 2 1 3 3 3 1 PAP2 superfamily Pho86 PF11124.8 CQR54649.1 - 0.032 13.7 1.7 0.057 12.9 1.7 1.3 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 DUF212 PF02681.14 CQR54650.1 - 1.3e-07 31.8 1.5 0.0039 17.3 0.1 2.1 1 1 1 2 2 2 2 Divergent PAP2 family PAP2 PF01569.21 CQR54650.1 - 0.03 14.1 2.1 0.045 13.5 2.1 1.3 1 1 0 1 1 1 0 PAP2 superfamily MNSV_P7B PF06692.11 CQR54650.1 - 0.58 10.2 3.0 0.4 10.7 1.3 1.6 1 1 1 2 2 2 0 Melon necrotic spot virus P7B protein Sigma70_r4_2 PF08281.12 CQR54651.1 - 1.1e-17 63.4 0.2 2.9e-17 62.1 0.2 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR54651.1 - 2.4e-16 59.2 0.1 4.1e-16 58.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR54651.1 - 2.7e-10 39.6 0.3 6e-10 38.5 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_16 PF12645.7 CQR54651.1 - 9.7e-07 28.7 0.0 2.4e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 CQR54651.1 - 7.9e-06 25.9 0.7 1.9e-05 24.6 0.7 1.6 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 CQR54651.1 - 0.0027 17.4 0.0 0.0064 16.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain zf-HC2 PF13490.6 CQR54652.1 - 8.1e-12 45.2 1.0 1.4e-11 44.4 1.0 1.4 1 0 0 1 1 1 1 Putative zinc-finger RseA_N PF03872.13 CQR54652.1 - 0.0074 16.8 0.6 0.04 14.4 0.1 2.1 2 0 0 2 2 2 1 Anti sigma-E protein RseA, N-terminal domain DUF3379 PF11859.8 CQR54652.1 - 0.027 13.8 0.1 0.033 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3379) DUF2207 PF09972.9 CQR54652.1 - 0.03 13.1 1.0 0.037 12.8 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4052 PF13261.6 CQR54652.1 - 0.069 13.0 7.8 0.12 12.1 7.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4052) FAM209 PF15206.6 CQR54652.1 - 0.071 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 FAM209 family DUF5113 PF17140.4 CQR54652.1 - 0.44 10.4 0.1 0.44 10.4 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5113) Kelch_1 PF01344.25 CQR54653.1 - 0.13 11.8 4.3 2.8 7.6 0.1 3.7 4 0 0 4 4 4 0 Kelch motif DUF2070 PF09843.9 CQR54653.1 - 0.82 7.9 12.6 1.2 7.3 12.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Fe-ADH PF00465.19 CQR54654.1 - 4.4e-109 364.6 0.0 5e-109 364.5 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 CQR54654.1 - 3.5e-17 62.9 0.1 1.4e-10 41.3 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PFK PF00365.20 CQR54654.1 - 0.048 13.0 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 Phosphofructokinase PrpR_N PF06506.11 CQR54655.1 - 2.2e-50 170.5 0.2 3.8e-50 169.7 0.2 1.3 1 0 0 1 1 1 1 Propionate catabolism activator HTH_8 PF02954.19 CQR54655.1 - 9.9e-14 50.9 0.1 2.6e-13 49.5 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 CQR54655.1 - 6.3e-05 22.5 0.2 0.00022 20.7 0.2 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 CQR54655.1 - 0.0047 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_3 PF01381.22 CQR54655.1 - 0.019 15.0 0.1 0.062 13.4 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.6 CQR54655.1 - 0.04 13.7 0.2 0.097 12.4 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 CQR54655.1 - 0.05 13.6 0.0 0.51 10.3 0.0 2.7 4 0 0 4 4 4 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_50 PF18024.1 CQR54655.1 - 0.053 13.1 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR54655.1 - 0.088 13.0 0.0 0.27 11.4 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 CQR54655.1 - 0.099 12.5 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.15 CQR54655.1 - 0.12 12.4 0.1 0.86 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase PAS_8 PF13188.7 CQR54655.1 - 0.13 12.3 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 PAS domain SBD_N PF07005.11 CQR54656.1 - 7.8e-61 205.7 0.0 1.1e-60 205.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-binding N-terminal domain NBD_C PF17042.5 CQR54656.1 - 7.9e-35 120.9 0.3 3.7e-34 118.7 0.1 2.0 2 0 0 2 2 2 1 Nucleotide-binding C-terminal domain Glucosamine_iso PF01182.20 CQR54656.1 - 0.034 14.0 0.1 0.15 11.9 0.0 2.0 3 0 0 3 3 3 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase META PF03724.16 CQR54656.1 - 0.051 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 META domain ABATE PF07336.11 CQR54656.1 - 0.086 13.5 1.9 0.37 11.5 0.6 2.2 2 0 0 2 2 2 0 Putative stress-induced transcription regulator PdxA PF04166.12 CQR54657.1 - 1.3e-102 343.0 0.5 1.5e-102 342.8 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA DHDPS PF00701.22 CQR54658.1 - 3.3e-84 282.0 0.0 3.9e-84 281.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family SBP_bac_8 PF13416.6 CQR54659.1 - 3.6e-23 82.8 8.1 3.6e-23 82.8 8.1 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR54659.1 - 7e-05 23.5 2.7 0.00012 22.7 1.5 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3502) DUF5314 PF17241.2 CQR54659.1 - 0.0017 18.1 0.1 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 Family of unknown function (DUF5314) SBP_bac_11 PF13531.6 CQR54659.1 - 0.024 14.4 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR54660.1 - 6e-13 48.9 9.7 6e-13 48.9 9.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54661.1 - 1.6e-10 41.0 26.2 2.8e-09 37.0 26.2 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BNR_2 PF13088.6 CQR54662.1 - 5.6e-57 193.2 0.1 6.5e-57 192.9 0.1 1.0 1 0 0 1 1 1 1 BNR repeat-like domain BNR PF02012.20 CQR54662.1 - 4.5e-08 31.9 12.8 0.34 11.1 0.2 5.6 5 0 0 5 5 5 4 BNR/Asp-box repeat Sortilin-Vps10 PF15902.5 CQR54662.1 - 0.00014 20.9 0.0 0.035 12.9 0.0 2.3 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, DUF4185 PF13810.6 CQR54662.1 - 0.0019 17.5 3.8 1.9 7.7 0.0 3.9 3 1 1 4 4 4 1 Domain of unknown function (DUF4185) Mo-co_dimer PF03404.16 CQR54662.1 - 0.029 14.4 2.6 5.8 6.9 0.1 3.4 4 0 0 4 4 4 0 Mo-co oxidoreductase dimerisation domain BNR_3 PF13859.6 CQR54662.1 - 0.1 11.9 0.0 0.32 10.2 0.0 1.8 1 1 0 1 1 1 0 BNR repeat-like domain BNR_4 PF15892.5 CQR54662.1 - 0.13 11.6 0.8 11 5.2 0.4 3.3 1 1 1 2 2 2 0 BNR repeat-containing family member HTH_18 PF12833.7 CQR54663.1 - 3.4e-19 68.9 0.0 5.2e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54663.1 - 1.5e-18 66.4 0.4 1.4e-08 34.6 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR54663.1 - 2e-15 56.9 0.3 4e-15 55.9 0.1 1.7 1 1 1 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR54663.1 - 8.8e-05 22.1 0.0 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 CQR54663.1 - 0.0016 18.1 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Cupin LolA_like PF17131.4 CQR54663.1 - 0.029 14.1 0.1 0.045 13.5 0.1 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein-sorting protein Cupin_6 PF12852.7 CQR54663.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 1 0 1 1 1 0 Cupin PfkB PF00294.24 CQR54664.1 - 1.7e-56 191.8 0.0 1.9e-56 191.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR54664.1 - 5.7e-05 22.6 0.0 8.9e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Exo_endo_phos_2 PF14529.6 CQR54664.1 - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase Alpha-amylase PF00128.24 CQR54665.1 - 4e-11 43.1 0.0 9.9e-11 41.8 0.0 1.6 2 1 0 2 2 2 1 Alpha amylase, catalytic domain FabA PF07977.13 CQR54668.1 - 1.4e-32 112.2 0.0 1.6e-32 112.0 0.0 1.0 1 0 0 1 1 1 1 FabA-like domain MaoC_dehydratas PF01575.19 CQR54668.1 - 0.00051 19.6 0.0 0.001 18.6 0.0 1.6 2 0 0 2 2 2 1 MaoC like domain 4HBT PF03061.22 CQR54668.1 - 0.0012 19.1 0.0 0.0018 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF3015 PF11220.8 CQR54668.1 - 0.0055 16.6 0.3 0.0077 16.1 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3015) ANAPC4_WD40 PF12894.7 CQR54669.1 - 0.003 17.8 0.1 0.062 13.6 0.0 2.7 1 1 0 2 2 2 1 Anaphase-promoting complex subunit 4 WD40 domain Peptidase_S9_N PF02897.15 CQR54669.1 - 0.0066 15.3 2.1 0.0069 15.2 0.5 1.8 1 1 1 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.12 CQR54669.1 - 0.018 15.0 0.2 0.23 11.5 0.1 2.8 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat PadR PF03551.14 CQR54670.1 - 1.5e-07 31.3 0.1 2.5e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 CQR54670.1 - 0.0084 16.2 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation TrmB PF01978.19 CQR54670.1 - 0.08 12.8 0.0 0.26 11.2 0.0 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4872 PF16169.5 CQR54671.1 - 5.8e-46 156.4 0.0 7.8e-46 156.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4872) BtrH_N PF14399.6 CQR54671.1 - 3.8e-45 153.4 0.1 5.9e-45 152.8 0.1 1.3 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal Peptidase_C39_2 PF13529.6 CQR54671.1 - 2.6e-06 28.0 0.0 0.00015 22.3 0.0 2.6 3 0 0 3 3 3 1 Peptidase_C39 like family Guanylate_cyc_2 PF09778.9 CQR54671.1 - 0.065 12.6 0.0 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 Guanylylate cyclase Peptidase_C70 PF12385.8 CQR54671.1 - 0.076 13.0 0.0 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 Papain-like cysteine protease AvrRpt2 F420_oxidored PF03807.17 CQR54672.1 - 2.8e-11 43.8 0.4 2.8e-11 43.8 0.4 1.9 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CQR54672.1 - 7.4e-08 32.7 0.1 1.4e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 CQR54672.1 - 3.5e-05 23.2 0.1 5.7e-05 22.5 0.1 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 CQR54672.1 - 0.00014 21.7 0.0 0.00025 20.9 0.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain 3HCDH_N PF02737.18 CQR54672.1 - 0.00084 19.3 0.2 0.003 17.5 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR54672.1 - 0.0031 17.8 2.1 0.0033 17.7 0.2 2.0 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.16 CQR54672.1 - 0.0069 16.0 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 CQR54672.1 - 0.0072 15.9 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_8 PF13450.6 CQR54672.1 - 0.015 15.5 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 CQR54672.1 - 0.015 15.3 0.4 0.43 10.5 0.0 2.3 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 CQR54672.1 - 0.025 14.7 0.6 0.083 13.0 0.6 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.14 CQR54672.1 - 0.038 13.2 0.1 0.053 12.8 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 CQR54672.1 - 0.15 11.4 1.1 0.21 10.9 0.3 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HxlR PF01638.17 CQR54673.1 - 6.9e-32 109.2 0.1 8.2e-32 108.9 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR54673.1 - 4.3e-05 23.4 0.0 9.7e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 CQR54673.1 - 0.0004 20.2 0.0 0.00063 19.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 CQR54673.1 - 0.00066 19.8 0.0 0.00088 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 CQR54673.1 - 0.002 18.1 0.0 0.0029 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR54673.1 - 0.0066 16.0 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR54673.1 - 0.0085 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 CQR54673.1 - 0.01 15.7 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Replic_Relax PF13814.6 CQR54673.1 - 0.015 15.4 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.6 CQR54673.1 - 0.023 14.7 0.0 0.053 13.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DUF505 PF04458.12 CQR54673.1 - 0.039 12.3 0.0 0.05 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_Crp_2 PF13545.6 CQR54673.1 - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 CQR54673.1 - 0.15 12.0 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Spore_permease PF03845.13 CQR54674.1 - 3.1e-71 239.8 34.1 3.1e-71 239.8 34.1 1.4 1 1 0 1 1 1 1 Spore germination protein Spore_GerAC PF05504.11 CQR54675.1 - 2.4e-34 118.9 2.1 2.4e-34 118.9 2.1 1.7 2 0 0 2 2 2 1 Spore germination B3/ GerAC like, C-terminal PTPlike_phytase PF14566.6 CQR54675.1 - 0.016 15.4 1.1 0.75 9.9 0.1 2.3 2 0 0 2 2 2 0 Inositol hexakisphosphate Tab2_like PF06485.11 CQR54675.1 - 0.02 14.4 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 RNA-binding protein Tab2/Atab2 GerA PF03323.13 CQR54676.1 - 5.4e-179 595.6 2.3 6.1e-179 595.4 2.3 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Pkinase PF00069.25 CQR54677.1 - 9.9e-27 93.9 0.0 1.3e-26 93.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 CQR54677.1 - 6.1e-16 58.5 0.0 7.6e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 CQR54677.1 - 1.9e-05 24.7 0.0 0.0037 17.2 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 CQR54677.1 - 4.3e-05 23.2 0.0 5.9e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 CQR54677.1 - 0.0083 15.5 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-like PF14531.6 CQR54677.1 - 0.054 12.8 0.0 0.1 11.9 0.0 1.4 2 0 0 2 2 2 0 Kinase-like Spore_permease PF03845.13 CQR54679.1 - 1.8e-49 168.3 20.5 2.2e-49 168.0 20.5 1.1 1 0 0 1 1 1 1 Spore germination protein GerA PF03323.13 CQR54680.1 - 3.3e-191 635.8 3.1 3.8e-191 635.6 3.1 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Spore_GerAC PF05504.11 CQR54681.1 - 3.5e-31 108.6 0.6 5.1e-31 108.1 0.6 1.2 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal Clp1 PF06807.14 CQR54681.1 - 0.068 13.6 0.3 33 4.9 0.0 3.1 3 0 0 3 3 3 0 Pre-mRNA cleavage complex II protein Clp1 DUF998 PF06197.13 CQR54682.1 - 0.052 13.1 0.7 0.055 13.1 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) PMP1_2 PF08114.11 CQR54682.1 - 0.054 13.3 0.1 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 ATPase proteolipid family DUF2304 PF10066.9 CQR54682.1 - 0.13 12.4 2.0 0.2 11.9 2.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) FapA PF03961.13 CQR54683.1 - 3e-49 167.9 0.0 1.8e-48 165.3 0.0 2.0 2 0 0 2 2 2 1 Flagellar Assembly Protein A MinC_C PF03775.16 CQR54683.1 - 0.012 15.6 2.4 0.13 12.3 1.2 2.5 1 1 1 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain TetR_N PF00440.23 CQR54684.1 - 4e-12 45.7 0.8 7.1e-12 44.9 0.8 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_5 PF08360.11 CQR54684.1 - 1.9e-05 24.9 0.1 5.9e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 QacR-like protein, C-terminal region HTH_Tnp_1_2 PF13022.6 CQR54684.1 - 0.03 14.5 0.0 0.072 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TetR_C_24 PF17932.1 CQR54684.1 - 0.11 12.7 0.3 0.25 11.6 0.1 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Acetyltransf_10 PF13673.7 CQR54685.1 - 3.8e-18 65.6 0.1 4.4e-18 65.5 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR54685.1 - 1e-09 38.6 0.2 1.3e-09 38.3 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR54685.1 - 3.3e-09 37.0 0.1 4.2e-09 36.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR54685.1 - 2.1e-05 24.6 0.3 0.0012 19.0 0.3 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 CQR54685.1 - 3.7e-05 24.4 0.0 6.2e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR54685.1 - 0.0074 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein TFIIA_gamma_N PF02268.16 CQR54685.1 - 0.063 13.3 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain Methyltransf_11 PF08241.12 CQR54686.1 - 1.2e-13 51.5 0.1 3.9e-13 49.9 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54686.1 - 1.8e-12 47.8 0.1 1.1e-11 45.3 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR54686.1 - 8.7e-08 32.8 0.1 2.1e-07 31.6 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR54686.1 - 1.1e-07 31.7 0.1 9.2e-07 28.8 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR54686.1 - 2.3e-06 27.5 0.0 3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 CQR54686.1 - 0.0001 21.9 0.0 0.00043 19.8 0.0 1.9 1 1 0 1 1 1 1 CheR methyltransferase, SAM binding domain Ubie_methyltran PF01209.18 CQR54686.1 - 0.00058 19.3 0.0 0.00096 18.5 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family PGA_cap PF09587.10 CQR54687.1 - 6.1e-73 245.4 0.1 7.7e-73 245.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Glyco_hydro2_C5 PF18565.1 CQR54688.1 - 4.6e-31 106.7 0.0 1.1e-30 105.5 0.0 1.7 2 0 0 2 2 2 1 Glycoside hydrolase family 2 C-terminal domain 5 Glyco_hydro_2_C PF02836.17 CQR54688.1 - 5.7e-27 94.6 0.0 9.2e-24 84.1 0.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 CQR54688.1 - 5.6e-20 71.9 0.0 1.4e-19 70.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain DUF4982 PF16355.5 CQR54688.1 - 4.4e-19 68.2 0.3 1.5e-18 66.4 0.3 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4982) Glyco_hydro_2 PF00703.21 CQR54688.1 - 3.3e-18 66.4 0.0 5.8e-18 65.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 CQR54688.1 - 6.2e-05 23.5 0.0 0.00018 22.1 0.0 1.8 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain His_kinase PF06580.13 CQR54689.1 - 6.7e-24 84.0 0.4 1.6e-23 82.8 0.4 1.7 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR54689.1 - 4.4e-10 40.0 0.0 1.1e-09 38.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR54689.1 - 3e-07 30.7 0.0 8.1e-07 29.3 0.0 1.8 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR54689.1 - 9.7e-07 28.8 2.3 9.7e-07 28.8 2.3 1.9 1 1 2 3 3 3 1 Cache domain HATPase_c_3 PF13589.6 CQR54689.1 - 0.0086 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR54690.1 - 3.9e-23 81.8 0.0 8.6e-23 80.6 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54690.1 - 1.4e-19 70.1 0.0 3.6e-19 68.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54690.1 - 2.7e-15 56.0 0.0 7.6e-07 29.1 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54690.1 - 6.5e-12 45.7 0.7 1.6e-11 44.5 0.2 1.9 2 0 0 2 2 2 1 GGDEF-like domain DUF2164 PF09932.9 CQR54690.1 - 0.026 14.6 0.1 0.14 12.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2164) PAS_9 PF13426.7 CQR54690.1 - 0.036 14.3 0.0 0.22 11.8 0.0 2.3 1 1 1 2 2 2 0 PAS domain BPD_transp_1 PF00528.22 CQR54691.1 - 2.4e-17 63.3 15.5 2.4e-17 63.3 15.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54692.1 - 1.5e-10 41.1 15.1 1.5e-10 41.1 15.1 2.5 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component CPP1-like PF11833.8 CQR54692.1 - 2.9 7.5 6.2 2 8.0 4.2 1.8 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF3502 PF12010.8 CQR54693.1 - 2.5e-28 99.3 0.2 2.5e-28 99.3 0.2 3.1 3 1 1 4 4 4 1 Domain of unknown function (DUF3502) SBP_bac_1 PF01547.25 CQR54693.1 - 6.3e-06 26.4 18.0 6.3e-06 26.4 18.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Glyco_hydro_35 PF01301.19 CQR54694.1 - 6.5e-59 200.1 5.0 1.1e-57 196.1 5.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 CQR54694.1 - 1.2e-15 57.7 0.0 3.8e-11 43.0 0.0 3.2 2 1 0 2 2 2 2 Beta-galactosidase Cellulase PF00150.18 CQR54694.1 - 1.6e-07 31.1 0.0 3.9e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) BetaGal_dom2 PF10435.9 CQR54694.1 - 0.00023 21.0 0.0 0.00038 20.3 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase, domain 2 BPD_transp_1 PF00528.22 CQR54695.1 - 9.7e-22 77.6 15.2 9.7e-22 77.6 15.2 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4383 PF14325.6 CQR54695.1 - 2 8.7 11.1 0.068 13.5 1.5 3.1 1 1 2 4 4 4 0 Domain of unknown function (DUF4383) BPD_transp_1 PF00528.22 CQR54696.1 - 2.9e-20 72.8 22.1 2.9e-20 72.8 22.1 2.7 2 1 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component His_kinase PF06580.13 CQR54697.1 - 1.6e-21 76.4 0.2 4.3e-21 75.0 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase HAMP PF00672.25 CQR54697.1 - 7.1e-10 39.1 0.0 1.5e-09 38.1 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR54697.1 - 1.6e-07 31.8 0.1 4.5e-07 30.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR54697.1 - 0.0047 16.7 0.1 0.019 14.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2768 PF10966.8 CQR54697.1 - 0.93 10.0 5.1 5.5 7.5 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2768) Response_reg PF00072.24 CQR54698.1 - 2.4e-20 72.8 0.1 5.5e-20 71.6 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54698.1 - 2.3e-19 69.5 0.0 5.8e-19 68.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54698.1 - 1.4e-16 60.1 0.4 5e-10 39.2 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54698.1 - 0.00027 21.2 0.0 0.00072 19.8 0.0 1.8 1 0 0 1 1 1 1 GGDEF-like domain SBP_bac_8 PF13416.6 CQR54699.1 - 1.5e-36 126.7 16.7 1.5e-36 126.7 16.7 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein MTHFR PF02219.17 CQR54699.1 - 0.035 13.4 0.3 2.1 7.6 0.0 2.5 3 0 0 3 3 3 0 Methylenetetrahydrofolate reductase CDK2AP PF09806.9 CQR54699.1 - 0.17 11.9 0.7 0.26 11.3 0.7 1.3 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein MLTD_N PF06474.12 CQR54699.1 - 2.4 8.4 3.9 5.3 7.3 3.9 1.6 1 0 0 1 1 1 0 MltD lipid attachment motif Melibiase PF02065.18 CQR54700.1 - 3e-33 115.2 0.0 4.1e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 Melibiase Melibiase_2 PF16499.5 CQR54700.1 - 1.4e-05 24.5 0.0 3e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Alpha galactosidase A Glyco_hydro_36N PF16875.5 CQR54700.1 - 0.00015 21.4 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 36 N-terminal domain Glyco_hydro_97 PF10566.9 CQR54700.1 - 0.017 14.4 0.0 0.04 13.2 0.0 1.6 1 1 0 1 1 1 0 Glycoside hydrolase 97 MazE_antitoxin PF04014.18 CQR54701.1 - 3.5e-11 42.8 0.2 4.9e-11 42.3 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin WG_beta_rep PF14903.6 CQR54701.1 - 0.059 13.7 0.5 12 6.3 0.0 2.5 3 0 0 3 3 3 0 WG containing repeat MraZ PF02381.18 CQR54701.1 - 0.12 12.4 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like HAD_2 PF13419.6 CQR54702.1 - 4.7e-18 65.9 0.0 5.9e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR54702.1 - 1.3e-10 42.0 0.1 2.8e-09 37.6 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR54702.1 - 3e-10 40.8 0.0 3.7e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 CQR54702.1 - 5.3e-05 23.3 0.0 0.051 13.7 0.0 2.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR54702.1 - 8.7e-05 22.5 0.1 0.00018 21.5 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.7 CQR54702.1 - 0.025 14.4 0.0 3.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Acid Phosphatase ATP-synt_C PF00137.21 CQR54702.1 - 0.068 13.5 0.1 0.69 10.3 0.0 2.2 2 0 0 2 2 2 0 ATP synthase subunit C Response_reg PF00072.24 CQR54703.1 - 5.5e-29 100.6 0.0 1.1e-28 99.6 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54703.1 - 6.8e-20 71.1 0.1 1.4e-19 70.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54703.1 - 1.7e-13 50.2 0.4 1.9e-08 34.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family FAD_oxidored PF12831.7 CQR54704.1 - 1.1e-116 390.7 0.4 1.3e-116 390.5 0.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR54704.1 - 1.1e-05 24.8 7.3 1.1e-05 24.8 7.3 1.8 2 1 0 2 2 2 1 FAD binding domain GIDA PF01134.22 CQR54704.1 - 3.4e-05 23.1 1.0 3.4e-05 23.1 1.0 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 CQR54704.1 - 0.00074 19.2 6.6 0.019 14.6 5.6 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR54704.1 - 0.0032 16.7 0.2 0.0063 15.8 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR54704.1 - 0.0091 14.7 3.9 0.0091 14.7 3.9 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 CQR54704.1 - 0.25 10.5 2.2 0.63 9.2 2.2 1.7 1 0 0 1 1 1 0 Thi4 family NAD_binding_8 PF13450.6 CQR54704.1 - 0.61 10.4 11.8 0.064 13.5 3.7 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 CQR54704.1 - 1.5 9.4 4.9 14 6.4 3.5 2.7 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 CQR54704.1 - 8.3 5.1 7.2 50 2.6 0.0 2.1 1 1 0 2 2 2 0 Tryptophan halogenase DctM PF06808.12 CQR54705.1 - 3.8e-06 26.0 49.8 4.7e-06 25.7 49.8 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component Na_H_antiporter PF03553.14 CQR54705.1 - 0.00056 19.2 19.9 0.00056 19.2 19.9 3.2 2 1 0 3 3 3 2 Na+/H+ antiporter family CitMHS PF03600.16 CQR54705.1 - 0.0014 17.9 44.2 0.0014 17.9 44.2 2.1 1 1 1 2 2 2 1 Citrate transporter Hydantoinase_A PF01968.18 CQR54706.1 - 1.8e-66 224.4 13.2 2.5e-64 217.4 8.9 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 CQR54706.1 - 1.9e-28 99.4 9.0 1e-27 97.0 5.7 3.0 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 CQR54706.1 - 5.7e-06 26.0 6.3 3e-05 23.7 0.3 3.4 3 1 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 CQR54706.1 - 0.002 17.8 1.3 0.0051 16.4 0.3 2.2 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain VirDNA-topo-I_N PF09266.10 CQR54706.1 - 0.015 15.4 0.0 0.051 13.7 0.0 1.8 1 0 0 1 1 1 0 Viral DNA topoisomerase I, N-terminal NMT1 PF09084.11 CQR54706.1 - 0.021 14.7 1.1 0.072 13.0 0.0 2.4 3 0 0 3 3 3 0 NMT1/THI5 like NAD_binding_3 PF03447.16 CQR54706.1 - 0.07 13.8 0.1 0.27 11.9 0.1 2.0 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DUF3782 PF12644.7 CQR54706.1 - 0.075 13.2 0.3 1.2 9.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) Glycos_trans_3N PF02885.17 CQR54706.1 - 0.089 12.7 4.6 0.46 10.4 0.3 3.6 3 1 0 3 3 3 0 Glycosyl transferase family, helical bundle domain His_kinase PF06580.13 CQR54708.1 - 1.1e-21 77.0 0.0 2.3e-21 75.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase HAMP PF00672.25 CQR54708.1 - 9.1e-11 42.0 0.1 1.8e-10 41.0 0.1 1.5 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR54708.1 - 2.1e-08 34.3 0.9 3.3e-08 33.6 0.3 1.6 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR54708.1 - 4.6e-07 30.3 0.0 9.3e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CD20 PF04103.15 CQR54708.1 - 0.048 13.7 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 CD20-like family Golgin_A5 PF09787.9 CQR54708.1 - 0.07 12.6 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 PrgI PF12666.7 CQR54708.1 - 0.22 12.2 0.7 8.4 7.2 0.1 2.3 2 0 0 2 2 2 0 PrgI family protein 4HB_MCP_1 PF12729.7 CQR54708.1 - 0.56 9.7 3.9 2.1 7.9 0.1 2.6 3 0 0 3 3 3 0 Four helix bundle sensory module for signal transduction SBP_bac_1 PF01547.25 CQR54709.1 - 2.9e-35 122.7 0.5 6.3e-35 121.6 0.5 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR54709.1 - 3e-26 92.9 0.0 4e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR54709.1 - 0.0061 16.3 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein 7TMR-DISM_7TM PF07695.11 CQR54710.1 - 1.5 8.6 18.9 3.2 7.6 18.9 1.5 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF872 PF05915.12 CQR54710.1 - 5 7.3 7.1 2.3 8.4 5.0 1.7 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) RseC_MucC PF04246.12 CQR54710.1 - 5.4 7.0 9.1 0.3 11.0 1.4 2.6 2 1 2 4 4 4 0 Positive regulator of sigma(E), RseC/MucC ATPgrasp_YheCD PF14398.6 CQR54711.1 - 4.7e-77 258.7 0.0 5.6e-77 258.4 0.0 1.1 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR54711.1 - 1.3e-06 27.9 0.0 0.0025 17.1 0.0 2.4 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 CQR54711.1 - 2.2e-06 27.2 0.0 2.7e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 CQR54711.1 - 0.0011 19.0 0.0 1 9.4 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Glycos_transf_1 PF00534.20 CQR54712.1 - 2.3e-15 56.5 0.0 3.8e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR54712.1 - 2.6e-14 53.8 0.0 4.1e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR54712.1 - 8.2e-11 42.2 1.4 3.4e-10 40.2 1.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR54712.1 - 4.8e-06 27.1 0.2 0.00012 22.5 0.2 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 CQR54712.1 - 0.087 13.2 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF3502 PF12010.8 CQR54713.1 - 9.7e-29 100.6 0.2 9.7e-29 100.6 0.2 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF3502) DUF1884 PF08967.10 CQR54713.1 - 0.18 12.0 0.2 9 6.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1884) BPD_transp_1 PF00528.22 CQR54714.1 - 2.2e-08 34.0 30.7 2e-07 30.9 30.7 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54715.1 - 3e-17 62.9 20.2 3e-17 62.9 20.2 2.4 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component RVT_1 PF00078.27 CQR54716.1 - 7.5e-40 136.8 0.0 1.1e-39 136.2 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR54716.1 - 0.0047 16.9 5.2 0.013 15.5 5.2 1.8 1 0 0 1 1 1 1 Group II intron, maturase-specific domain DUF2399 PF09664.10 CQR54716.1 - 0.29 11.0 0.8 0.54 10.2 0.0 1.8 3 0 0 3 3 3 0 Protein of unknown function C-terminus (DUF2399) HTH_18 PF12833.7 CQR54717.1 - 1e-18 67.4 0.0 2e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54717.1 - 1.5e-15 56.9 0.1 3.8e-10 39.6 0.0 2.9 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR54717.1 - 0.00024 21.0 3.4 0.00041 20.2 3.4 1.4 1 0 0 1 1 1 1 Cache domain GGDEF_2 PF17853.1 CQR54717.1 - 0.0016 18.7 0.1 0.0044 17.3 0.1 1.7 1 0 0 1 1 1 1 GGDEF-like domain Rrf2 PF02082.20 CQR54717.1 - 0.0016 18.8 0.1 0.0083 16.5 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_24 PF13412.6 CQR54717.1 - 0.002 17.6 0.0 0.32 10.6 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 CQR54717.1 - 0.0076 16.3 0.0 0.5 10.5 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix MarR_2 PF12802.7 CQR54717.1 - 0.092 12.6 0.2 0.71 9.8 0.0 2.6 3 0 0 3 3 3 0 MarR family HTH_AsnC-type PF13404.6 CQR54717.1 - 0.13 12.1 0.0 6.2 6.7 0.0 3.5 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain Glyco_hydro_43 PF04616.14 CQR54718.1 - 4.1e-95 318.4 2.2 5.5e-95 318.0 2.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR54718.1 - 2.2e-59 200.6 0.1 3.1e-59 200.1 0.1 1.2 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain DUF1349 PF07081.11 CQR54718.1 - 0.0084 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) Glyco_hydro_28 PF00295.17 CQR54719.1 - 1.2e-28 100.1 0.0 4.8e-25 88.3 0.0 3.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.7 CQR54719.1 - 3.9e-09 36.7 0.2 0.00084 19.2 0.0 3.3 2 1 1 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.6 CQR54719.1 - 6.7e-06 26.0 0.0 0.00035 20.4 0.0 2.3 1 1 1 2 2 2 2 Right handed beta helix region HTH_18 PF12833.7 CQR54720.1 - 6.4e-23 80.8 0.6 1.4e-22 79.8 0.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54720.1 - 2.8e-17 62.3 1.0 1.1e-09 38.1 0.1 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR54720.1 - 1.5e-09 37.9 0.1 5.1e-09 36.1 0.1 1.9 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR54720.1 - 2.1e-06 27.4 0.0 4e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Cupin domain Rrf2 PF02082.20 CQR54720.1 - 0.11 12.9 0.1 0.46 10.9 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator Pectinesterase PF01095.19 CQR54721.1 - 5e-62 209.3 0.0 6.1e-62 209.0 0.0 1.0 1 0 0 1 1 1 1 Pectinesterase RNA_pol_Rpb2_3 PF04565.16 CQR54721.1 - 0.12 12.6 0.0 0.81 9.9 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 3 Abhydrolase_7 PF12715.7 CQR54722.1 - 2.6e-17 63.1 0.0 2.6e-16 59.9 0.0 1.9 1 1 0 1 1 1 1 Abhydrolase family DLH PF01738.18 CQR54722.1 - 3.8e-06 26.6 0.0 5.9e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 CQR54722.1 - 1.9e-05 24.7 0.0 3.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 CQR54722.1 - 0.00064 20.4 4.2 0.00081 20.1 3.5 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 CQR54722.1 - 0.0022 17.5 0.5 0.011 15.3 0.3 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family AXE1 PF05448.12 CQR54722.1 - 0.015 14.0 0.1 0.033 12.9 0.0 1.5 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 CQR54722.1 - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 alpha/beta hydrolase fold Glyco_hydro_88 PF07470.13 CQR54723.1 - 1.4e-98 330.1 0.2 1.6e-98 329.9 0.2 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 CQR54723.1 - 0.0009 18.6 0.7 0.054 12.7 0.0 2.9 2 1 1 3 3 3 3 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Recombinase PF07508.13 CQR54724.1 - 1.3e-24 86.6 0.8 2.9e-24 85.5 0.8 1.6 1 0 0 1 1 1 1 Recombinase Resolvase PF00239.21 CQR54724.1 - 2.7e-20 73.0 2.0 6.3e-20 71.8 2.0 1.7 1 0 0 1 1 1 1 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 CQR54724.1 - 3.6e-08 33.8 0.6 8e-08 32.7 0.6 1.6 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain DUF4164 PF13747.6 CQR54724.1 - 0.057 13.7 1.4 0.14 12.4 1.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) PP2C PF00481.21 CQR54725.1 - 0.042 13.5 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C DDE_Tnp_ISL3 PF01610.17 CQR54727.1 - 1.1e-64 218.4 0.9 1.3e-63 214.9 0.0 2.0 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 CQR54727.1 - 1.7e-09 37.0 0.0 3.7e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 CQR54727.1 - 2.7e-06 28.0 1.3 4.9e-06 27.1 1.3 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FGase PF05013.12 CQR54727.1 - 0.038 14.2 0.1 2.7 8.2 0.1 2.3 1 1 0 1 1 1 0 N-formylglutamate amidohydrolase PAS_8 PF13188.7 CQR54727.1 - 0.098 12.7 0.0 8.1 6.6 0.0 2.6 2 0 0 2 2 2 0 PAS domain Zn_Tnp_IS1 PF03811.13 CQR54727.1 - 0.63 9.8 2.7 0.74 9.6 1.0 2.0 2 0 0 2 2 2 0 InsA N-terminal domain MFS_1 PF07690.16 CQR54728.1 - 1.2e-43 149.4 47.7 1.2e-43 149.4 47.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR54728.1 - 2.2e-09 37.1 27.7 2.9e-09 36.7 27.7 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 CQR54728.1 - 2.7e-08 33.1 49.0 8.9e-08 31.4 17.0 3.2 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 CQR54728.1 - 5.8e-08 31.6 19.8 8.3e-08 31.1 19.8 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Acetyltransf_1 PF00583.25 CQR54730.1 - 0.00059 20.1 0.0 0.002 18.4 0.0 1.6 1 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR54730.1 - 0.0022 18.4 0.0 0.0033 17.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR54730.1 - 0.05 13.5 0.0 0.066 13.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR54730.1 - 0.078 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ATPgrasp_YheCD PF14398.6 CQR54731.1 - 5.3e-81 271.6 0.0 6.9e-81 271.3 0.0 1.1 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR54731.1 - 0.0005 19.4 0.0 0.068 12.4 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 CQR54731.1 - 0.0038 16.6 0.0 0.0078 15.6 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Spore_IV_A PF09547.10 CQR54731.1 - 0.25 10.2 0.0 9.4 5.0 0.0 2.0 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) ATPgrasp_YheCD PF14398.6 CQR54732.1 - 1e-82 277.2 0.0 1.3e-82 276.9 0.0 1.1 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR54732.1 - 8.1e-05 22.0 0.0 0.056 12.7 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ProQ_C PF17516.2 CQR54732.1 - 0.05 13.0 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 ProQ C-terminal domain ATPgrasp_YheCD PF14398.6 CQR54733.1 - 4.2e-69 232.6 0.0 5.4e-69 232.3 0.0 1.1 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR54733.1 - 2.4e-05 23.8 0.0 0.18 11.1 0.0 3.0 3 0 0 3 3 3 3 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 CQR54734.1 - 7.4e-81 271.2 0.0 9.5e-81 270.8 0.0 1.1 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR54734.1 - 1.3e-08 34.4 0.0 0.00073 18.9 0.0 2.4 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp TTL PF03133.15 CQR54734.1 - 4.8e-05 22.6 0.0 0.00054 19.2 0.0 2.1 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family GSH-S_ATP PF02955.16 CQR54734.1 - 0.0033 16.9 0.0 0.023 14.1 0.0 2.1 1 1 1 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain Com_YlbF PF06133.11 CQR54735.1 - 2.6e-25 89.0 3.8 2.9e-25 88.9 3.8 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA ALMT PF11744.8 CQR54735.1 - 0.046 12.6 0.9 0.05 12.4 0.9 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF5315 PF17242.2 CQR54735.1 - 0.047 13.5 0.7 0.16 11.8 0.3 1.9 1 1 0 2 2 2 0 Disordered region of unknown function (DUF5315) CDT1_C PF16679.5 CQR54735.1 - 0.064 13.7 1.1 0.16 12.4 0.4 1.8 1 1 1 2 2 2 0 DNA replication factor Cdt1 C-terminal domain LOR PF04525.12 CQR54736.1 - 0.027 14.1 0.4 0.14 11.8 0.1 1.8 1 1 1 2 2 2 0 LURP-one-related Phage_holin_3_6 PF07332.11 CQR54737.1 - 0.0093 16.0 0.1 0.011 15.7 0.1 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF3953 PF13129.6 CQR54737.1 - 4 7.3 7.3 6.3 6.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3953) DDE_Tnp_1 PF01609.21 CQR54738.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR54738.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR54738.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR54738.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain DRTGG PF07085.12 CQR54739.1 - 6.2e-29 99.9 0.1 1.3e-28 98.9 0.1 1.6 1 0 0 1 1 1 1 DRTGG domain CBS PF00571.28 CQR54739.1 - 1.5e-13 51.0 0.2 4.4e-07 30.2 0.0 2.9 2 0 0 2 2 2 2 CBS domain GntR PF00392.21 CQR54739.1 - 1.7e-06 27.6 1.7 2.7e-06 26.9 0.4 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 CQR54739.1 - 1.8e-05 24.6 0.8 8.1e-05 22.5 0.2 2.3 2 0 0 2 2 2 1 HTH domain HTH_29 PF13551.6 CQR54739.1 - 0.00013 21.9 0.0 0.00033 20.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 CQR54739.1 - 0.00054 19.5 0.1 0.0016 17.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 CQR54739.1 - 0.0016 18.4 0.1 0.0055 16.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR54739.1 - 0.0016 18.5 0.0 0.0057 16.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain 4HBT PF03061.22 CQR54739.1 - 0.0022 18.3 0.0 0.0043 17.4 0.0 1.5 1 0 0 1 1 1 1 Thioesterase superfamily HTH_23 PF13384.6 CQR54739.1 - 0.0044 16.8 0.1 0.015 15.1 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.7 CQR54739.1 - 0.01 15.7 0.2 0.041 13.8 0.1 2.0 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 CQR54739.1 - 0.018 14.8 0.1 0.052 13.3 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR54739.1 - 0.025 14.4 0.0 0.068 13.0 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 CQR54739.1 - 0.029 14.1 0.4 0.12 12.1 0.2 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_psq PF05225.16 CQR54739.1 - 0.032 14.0 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain TrmB PF01978.19 CQR54739.1 - 0.079 12.9 0.2 0.22 11.4 0.2 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 CQR54739.1 - 0.08 12.8 0.1 0.27 11.1 0.1 1.9 1 0 0 1 1 1 0 HTH DNA binding domain Fe_dep_repress PF01325.19 CQR54739.1 - 0.081 13.1 0.1 0.2 11.9 0.1 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.13 CQR54739.1 - 0.1 13.2 0.0 0.28 11.8 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain YtpI PF14007.6 CQR54740.1 - 1.5e-21 76.3 4.9 1.8e-21 76.1 4.9 1.1 1 0 0 1 1 1 1 YtpI-like protein ATP_synt_H PF05493.13 CQR54740.1 - 0.014 15.8 1.2 0.044 14.3 0.6 1.9 2 0 0 2 2 2 0 ATP synthase subunit H MFS_1 PF07690.16 CQR54740.1 - 0.018 14.0 3.9 0.021 13.7 3.9 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF1129 PF06570.11 CQR54740.1 - 0.044 13.3 1.2 0.052 13.0 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) T_cell_tran_alt PF15128.6 CQR54740.1 - 0.054 13.3 0.0 0.092 12.6 0.0 1.4 1 1 0 1 1 1 0 T-cell leukemia translocation-altered Herpes_UL20 PF04544.12 CQR54740.1 - 0.057 13.8 0.2 0.057 13.8 0.2 1.6 1 1 1 2 2 2 0 Herpesvirus egress protein UL20 DUF898 PF05987.13 CQR54740.1 - 0.094 11.7 2.8 0.11 11.5 2.8 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) 7tm_3 PF00003.22 CQR54740.1 - 0.15 11.8 5.9 0.2 11.4 5.9 1.1 1 0 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR RSN1_TM PF13967.6 CQR54740.1 - 0.28 10.9 3.1 0.14 11.9 1.2 1.5 1 1 1 2 2 2 0 Late exocytosis, associated with Golgi transport CRPA PF05745.11 CQR54740.1 - 0.5 10.4 5.5 0.63 10.0 5.5 1.3 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) TctA PF01970.16 CQR54740.1 - 0.53 8.9 8.4 0.62 8.7 8.4 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family Tetraspanin PF00335.20 CQR54740.1 - 1.1 9.0 5.0 1.4 8.6 5.0 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF4538 PF15061.6 CQR54740.1 - 6.2 6.6 5.4 2 8.2 1.8 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) TRIQK PF15168.6 CQR54741.1 - 0.00051 19.9 0.2 0.00051 19.9 0.2 1.8 2 0 0 2 2 2 1 Triple QxxK/R motif-containing protein family bZIP_1 PF00170.21 CQR54741.1 - 0.086 12.9 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 bZIP transcription factor UCR_UQCRX_QCR9 PF05365.12 CQR54741.1 - 0.12 12.3 0.4 0.23 11.4 0.4 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like Spore_YtrH PF14034.6 CQR54742.1 - 1.1e-38 131.4 2.0 1.2e-38 131.3 2.0 1.0 1 0 0 1 1 1 1 Sporulation protein YtrH DNA_pol3_alpha PF07733.12 CQR54743.1 - 3.4e-105 351.3 0.0 5.6e-105 350.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 CQR54743.1 - 3.9e-59 198.7 0.0 6.1e-59 198.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain PHP PF02811.19 CQR54743.1 - 1.2e-55 188.4 0.1 2.4e-55 187.4 0.1 1.6 1 0 0 1 1 1 1 PHP domain HHH_6 PF14579.6 CQR54743.1 - 2.7e-27 94.8 0.0 1.2e-26 92.8 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.25 CQR54743.1 - 0.00026 20.9 0.0 0.00058 19.8 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF655 PF04919.12 CQR54743.1 - 0.0085 16.1 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF655) DUF4539 PF15072.6 CQR54743.1 - 0.11 12.6 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) PgpA PF04608.13 CQR54744.1 - 1.6e-17 63.9 0.0 1.9e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Carboxyl_trans PF01039.22 CQR54746.1 - 3.8e-18 65.4 2.2 6.6e-18 64.6 2.2 1.4 1 1 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 CQR54746.1 - 3.1e-09 36.7 6.2 4e-09 36.4 5.1 1.7 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 CQR54746.1 - 0.018 15.0 0.9 0.036 14.0 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 CQR54746.1 - 0.031 14.3 0.7 0.049 13.6 0.7 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF35_N PF12172.8 CQR54746.1 - 0.038 13.9 0.2 0.82 9.6 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 CQR54746.1 - 0.049 13.3 0.7 5 6.9 0.2 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 CQR54746.1 - 0.05 13.0 1.6 4.1 7.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 CQR54746.1 - 0.061 13.4 0.5 0.11 12.5 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 CQR54746.1 - 0.1 12.7 0.9 0.23 11.6 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 CQR54746.1 - 0.11 12.3 3.7 3.1 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 CQR54746.1 - 0.12 12.3 4.1 2 8.4 0.6 2.7 2 1 0 2 2 2 0 Nudix N-terminal DUF2072 PF09845.9 CQR54746.1 - 0.22 11.8 1.9 0.43 10.8 1.9 1.6 1 1 0 1 1 1 0 Zn-ribbon containing protein zf-tcix PF14952.6 CQR54746.1 - 0.65 9.7 6.9 6.4 6.5 0.2 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.6 CQR54746.1 - 3.8 7.6 6.1 2.5 8.1 0.2 2.4 1 1 1 2 2 2 0 YhfH-like protein ACCA PF03255.14 CQR54747.1 - 5.8e-56 188.4 0.0 9.7e-56 187.6 0.0 1.4 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 CQR54747.1 - 2.8e-19 69.2 0.4 3.7e-19 68.7 0.4 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 CQR54747.1 - 0.0004 19.9 0.3 0.00059 19.4 0.3 1.3 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) ECH_1 PF00378.20 CQR54747.1 - 0.022 14.1 1.0 0.058 12.7 1.0 1.6 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase PK PF00224.21 CQR54748.1 - 6.4e-155 515.3 7.2 1.1e-154 514.6 7.2 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 CQR54748.1 - 2.1e-35 121.4 1.1 4.9e-35 120.3 1.1 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 CQR54748.1 - 1.8e-05 24.0 1.0 4.1e-05 22.8 1.0 1.5 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Peptidase_A4 PF01828.17 CQR54749.1 - 2.2e-32 112.2 1.5 2.7e-32 112.0 1.5 1.1 1 0 0 1 1 1 1 Peptidase A4 family MFS_1_like PF12832.7 CQR54750.1 - 6.9e-41 140.4 29.3 1.4e-40 139.3 29.3 1.5 1 1 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 CQR54750.1 - 5.6e-25 88.0 51.6 8.5e-18 64.4 28.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.16 CQR54750.1 - 8.8e-21 74.3 26.1 1e-20 74.1 26.1 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter LacY_symp PF01306.19 CQR54750.1 - 3.3e-08 32.7 25.2 4.2e-07 29.1 25.2 2.0 1 1 0 1 1 1 1 LacY proton/sugar symporter MFS_2 PF13347.6 CQR54750.1 - 4.7e-07 28.7 32.4 3.9e-06 25.7 25.4 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein Rick_17kDa_Anti PF05433.15 CQR54750.1 - 0.22 11.4 2.6 0.26 11.2 0.2 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain 4HBT PF03061.22 CQR54751.1 - 2.5e-14 53.4 0.1 5.1e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 CQR54751.1 - 8.3e-09 36.0 0.0 9.2e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily FxsA PF04186.13 CQR54752.1 - 8.4e-30 103.1 5.4 1.1e-29 102.7 5.4 1.0 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SNARE_assoc PF09335.11 CQR54752.1 - 0.0099 16.4 4.7 1.3 9.5 0.4 2.1 2 0 0 2 2 2 2 SNARE associated Golgi protein TMEM251 PF15190.6 CQR54752.1 - 0.098 12.6 0.2 0.17 11.8 0.2 1.5 1 0 0 1 1 1 0 Transmembrane protein 251 DUF3040 PF11239.8 CQR54752.1 - 0.29 11.4 4.0 2 8.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) AI-2E_transport PF01594.16 CQR54754.1 - 6.3e-60 203.0 34.6 9.1e-60 202.5 34.6 1.2 1 0 0 1 1 1 1 AI-2E family transporter TTKRSYEDQ PF10212.9 CQR54754.1 - 0.21 10.6 0.1 0.27 10.2 0.1 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Citrate_synt PF00285.21 CQR54755.1 - 6e-127 423.6 0.1 6.8e-127 423.5 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Iso_dh PF00180.20 CQR54756.1 - 4.5e-118 394.4 0.0 5.8e-118 394.0 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Ldh_1_N PF00056.23 CQR54757.1 - 6.8e-41 139.7 0.4 9.4e-41 139.2 0.4 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 CQR54757.1 - 1.7e-24 86.6 0.0 2.6e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.14 CQR54757.1 - 7.5e-06 25.6 0.8 1.5e-05 24.6 0.8 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 CQR54757.1 - 6.4e-05 22.7 0.1 0.00037 20.2 0.0 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Glyco_hydro_4 PF02056.16 CQR54757.1 - 6.6e-05 22.5 0.7 0.065 12.8 0.2 2.4 1 1 1 2 2 2 2 Family 4 glycosyl hydrolase 3HCDH_N PF02737.18 CQR54757.1 - 0.0077 16.1 0.3 0.044 13.7 0.3 2.1 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 CQR54757.1 - 0.0082 15.8 0.1 0.041 13.5 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 CQR54757.1 - 0.0091 16.2 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 CQR54757.1 - 0.05 12.8 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF1188 PF06690.11 CQR54757.1 - 0.051 13.1 0.1 0.072 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) ThiF PF00899.21 CQR54757.1 - 0.096 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.20 CQR54757.1 - 0.099 12.7 0.2 0.21 11.6 0.2 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF898 PF05987.13 CQR54758.1 - 0.42 9.6 9.9 0.87 8.6 9.9 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) adh_short_C2 PF13561.6 CQR54759.1 - 1.5e-63 214.5 0.0 1.9e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR54759.1 - 1.1e-50 171.8 0.0 1.4e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR54759.1 - 5.2e-11 42.8 0.0 7.2e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 CQR54759.1 - 0.00054 19.4 0.0 0.00087 18.7 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) GDP_Man_Dehyd PF16363.5 CQR54759.1 - 0.0019 17.7 0.1 0.0024 17.3 0.1 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 CQR54759.1 - 0.0024 17.4 0.1 0.0035 16.8 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_transf_28 PF03033.20 CQR54759.1 - 0.14 12.2 0.1 3.3 7.7 0.0 2.2 1 1 1 2 2 2 0 Glycosyltransferase family 28 N-terminal domain TMP-TENI PF02581.17 CQR54760.1 - 1e-40 139.0 0.1 1.1e-40 138.9 0.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 CQR54760.1 - 4.6e-05 22.8 0.2 7.7e-05 22.1 0.2 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PRAI PF00697.22 CQR54760.1 - 0.14 11.9 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ThiS PF02597.20 CQR54761.1 - 4.6e-11 43.2 0.0 5.4e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family ThiG PF05690.14 CQR54762.1 - 6.1e-102 340.1 1.8 6.8e-102 340.0 1.8 1.0 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 CQR54762.1 - 6.6e-06 25.7 0.0 0.00016 21.2 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 CQR54762.1 - 0.0042 16.5 0.5 0.006 16.0 0.5 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 CQR54762.1 - 0.008 15.2 0.2 0.012 14.7 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.14 CQR54762.1 - 0.0091 15.2 0.0 0.02 14.1 0.0 1.6 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 CQR54762.1 - 0.094 11.7 0.1 0.14 11.1 0.1 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain TraC PF07820.12 CQR54762.1 - 0.14 12.5 0.6 3.1 8.2 0.1 2.3 2 0 0 2 2 2 0 TraC-like protein BATS PF06968.13 CQR54763.1 - 1.2e-26 92.6 0.0 2e-26 91.9 0.0 1.4 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 CQR54763.1 - 1.4e-10 41.8 0.0 4e-10 40.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily HD_2 PF12917.7 CQR54764.1 - 1.8e-68 229.9 0.0 2.1e-68 229.7 0.0 1.0 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 CQR54764.1 - 1.1e-15 57.9 0.0 1.4e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 HD domain HD PF01966.22 CQR54764.1 - 0.00013 22.2 0.2 0.00035 20.8 0.2 1.7 1 1 0 1 1 1 1 HD domain Fumerase PF05681.14 CQR54765.1 - 1.9e-70 237.4 0.0 2.7e-70 236.9 0.0 1.1 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 CQR54765.1 - 2.7e-62 209.7 0.2 4e-62 209.2 0.2 1.2 1 0 0 1 1 1 1 Fumarase C-terminus Alpha-amylase PF00128.24 CQR54766.1 - 1.4e-55 189.2 1.9 1.1e-54 186.2 1.0 2.4 2 1 0 2 2 2 1 Alpha amylase, catalytic domain CBM_25 PF03423.13 CQR54766.1 - 2.8e-55 185.0 23.5 4.5e-35 120.1 8.5 4.8 5 0 0 5 5 5 2 Carbohydrate binding domain (family 25) CBM53 PF16760.5 CQR54766.1 - 2.2e-17 63.4 1.1 2.8e-06 27.8 0.3 4.1 3 0 0 3 3 3 3 Starch/carbohydrate-binding module (family 53) RGI_lyase PF18370.1 CQR54766.1 - 1.8e-05 24.9 2.1 4.7e-05 23.6 2.1 1.6 1 0 0 1 1 1 1 Rhamnogalacturonan I lyases beta-sheet domain CBM_20 PF00686.19 CQR54766.1 - 3.3e-05 23.7 2.0 8.5e-05 22.4 0.0 2.7 3 0 0 3 3 3 1 Starch binding domain fn3 PF00041.21 CQR54766.1 - 5e-05 23.6 1.8 0.00023 21.5 1.6 2.4 2 0 0 2 2 2 1 Fibronectin type III domain AMPK1_CBM PF16561.5 CQR54766.1 - 0.0075 16.5 0.1 0.096 12.9 0.0 2.8 2 0 0 2 2 2 1 Glycogen recognition site of AMP-activated protein kinase DUF1966 PF09260.11 CQR54766.1 - 0.044 14.1 2.7 0.14 12.5 0.5 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1966) DUF4115 PF13464.6 CQR54766.1 - 0.2 11.9 3.5 8.3 6.7 0.0 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) PRCC PF10253.9 CQR54766.1 - 2.1 9.1 5.7 5.7 7.7 5.7 1.7 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting HATPase_c PF02518.26 CQR54767.1 - 6.9e-31 107.1 0.2 1.6e-30 105.9 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54767.1 - 5.5e-19 68.0 0.5 1.6e-17 63.3 0.0 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR54767.1 - 9.9e-16 57.9 0.6 3.5e-15 56.1 0.6 2.1 1 0 0 1 1 1 1 HAMP domain PAS PF00989.25 CQR54767.1 - 3.1e-09 36.8 0.1 8.4e-09 35.4 0.1 1.8 1 0 0 1 1 1 1 PAS fold sCache_like PF16736.5 CQR54767.1 - 2.4e-08 34.1 0.3 1.6e-07 31.4 0.1 2.4 2 1 0 2 2 2 1 Single Cache-like PAS_4 PF08448.10 CQR54767.1 - 4.3e-06 27.0 0.0 8.5e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 CQR54767.1 - 8.4e-06 25.9 0.5 3.8e-05 23.8 0.2 2.3 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 CQR54767.1 - 1e-05 25.7 0.5 8.5e-05 22.8 0.0 2.7 4 0 0 4 4 4 1 PAS domain PAS_8 PF13188.7 CQR54767.1 - 0.0002 21.3 0.0 0.00067 19.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 CQR54767.1 - 0.0015 18.4 0.0 0.0051 16.7 0.0 1.9 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 CQR54767.1 - 0.0046 16.8 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 CQR54767.1 - 0.0084 16.7 0.1 0.34 11.5 0.0 2.5 2 0 0 2 2 2 1 PAS domain vATP-synt_E PF01991.18 CQR54767.1 - 0.039 13.4 0.4 0.31 10.4 0.1 2.4 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit Response_reg PF00072.24 CQR54768.1 - 2.9e-29 101.5 0.0 4.4e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR54768.1 - 2e-24 85.4 0.0 3.7e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 CQR54768.1 - 0.12 11.9 0.0 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family ABC_tran PF00005.27 CQR54769.1 - 1.5e-32 112.9 0.0 2.1e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR54769.1 - 7.6e-09 35.3 0.1 2.4e-07 30.4 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR54769.1 - 1.3e-08 35.0 0.1 0.00027 20.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR54769.1 - 1.9e-05 24.9 0.2 0.00013 22.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR54769.1 - 3.6e-05 23.7 0.0 0.00012 22.1 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 CQR54769.1 - 0.00018 22.0 0.3 0.00063 20.2 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR54769.1 - 0.00028 20.6 0.0 0.00058 19.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR54769.1 - 0.00047 20.7 0.0 0.00059 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR54769.1 - 0.00065 19.5 0.0 0.00081 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 CQR54769.1 - 0.0011 19.2 0.0 0.0019 18.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR54769.1 - 0.0012 18.6 0.1 0.2 11.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 CQR54769.1 - 0.0017 18.3 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain NB-ARC PF00931.22 CQR54769.1 - 0.0028 16.9 0.0 0.0044 16.3 0.0 1.3 1 1 0 1 1 1 1 NB-ARC domain AAA PF00004.29 CQR54769.1 - 0.0051 17.2 0.1 0.75 10.2 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 CQR54769.1 - 0.0055 15.6 0.1 2.5 6.8 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_18 PF13238.6 CQR54769.1 - 0.0099 16.4 0.0 0.032 14.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 CQR54769.1 - 0.012 15.9 0.0 0.037 14.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR54769.1 - 0.025 14.3 0.1 2.4 7.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein SepF PF04472.12 CQR54769.1 - 0.027 14.8 0.0 0.18 12.1 0.0 2.1 2 0 0 2 2 2 0 Cell division protein SepF Adeno_IVa2 PF02456.15 CQR54769.1 - 0.028 13.2 0.0 0.078 11.8 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_25 PF13481.6 CQR54769.1 - 0.042 13.4 0.0 0.1 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 CQR54769.1 - 0.047 13.7 0.2 0.47 10.5 0.0 2.4 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 CQR54769.1 - 0.066 13.5 0.3 0.85 9.9 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 CQR54769.1 - 0.069 13.6 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 CQR54769.1 - 0.14 12.3 0.1 0.3 11.2 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.18 CQR54769.1 - 0.16 11.7 0.0 0.45 10.2 0.0 1.7 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PhoU PF01895.19 CQR54770.1 - 1.1e-34 118.8 7.7 5.9e-18 65.1 0.3 2.1 2 0 0 2 2 2 2 PhoU domain Siah-Interact_N PF09032.11 CQR54770.1 - 0.16 12.3 0.6 0.41 11.0 0.6 1.6 1 0 0 1 1 1 0 Siah interacting protein, N terminal DNA_pol_A PF00476.20 CQR54771.1 - 8.3e-158 525.3 0.0 1.1e-157 524.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 CQR54771.1 - 8.5e-55 185.0 0.0 1.6e-54 184.1 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain 5_3_exonuc PF01367.20 CQR54771.1 - 5.1e-34 116.8 0.1 4.4e-33 113.8 0.1 2.7 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 CQR54771.1 - 0.00086 19.9 0.2 0.0063 17.1 0.0 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_A_exo1 PF01612.20 CQR54771.1 - 0.0034 17.1 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 3'-5' exonuclease HHH_2 PF12826.7 CQR54771.1 - 0.0036 17.4 0.0 0.033 14.3 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif Alpha-2-MRAP_N PF06400.11 CQR54771.1 - 0.06 13.3 0.2 0.35 10.9 0.0 2.3 3 0 0 3 3 3 0 Alpha-2-macroglobulin RAP, N-terminal domain HHH PF00633.23 CQR54771.1 - 0.11 12.4 0.3 1.1 9.3 0.1 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif NYN_YacP PF05991.11 CQR54771.1 - 0.14 12.1 0.1 2.8 7.8 0.1 2.3 2 0 0 2 2 2 0 YacP-like NYN domain Fapy_DNA_glyco PF01149.24 CQR54772.1 - 2e-33 115.4 0.3 3.1e-33 114.9 0.3 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 CQR54772.1 - 1e-28 99.2 0.0 2e-28 98.2 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 CQR54772.1 - 1.9e-10 40.4 2.6 3.4e-10 39.6 2.6 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.11 CQR54772.1 - 4.6e-05 22.4 0.0 6.2e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Mntp PF02659.15 CQR54773.1 - 3.5e-16 59.3 23.4 2.9e-08 33.6 7.3 2.1 2 0 0 2 2 2 2 Putative manganese efflux pump DUF2512 PF10710.9 CQR54773.1 - 0.2 11.3 1.6 0.44 10.2 1.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) DPM3 PF08285.11 CQR54773.1 - 3.3 8.0 8.4 8.1 6.7 0.9 2.4 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2919 PF11143.8 CQR54773.1 - 7 7.0 7.7 0.59 10.5 1.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) CoaE PF01121.20 CQR54774.1 - 8.9e-61 204.7 0.1 1.1e-60 204.4 0.1 1.0 1 0 0 1 1 1 1 Dephospho-CoA kinase SLT PF01464.20 CQR54775.1 - 5.8e-26 90.5 0.0 7.1e-26 90.2 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain SLT_2 PF13406.6 CQR54775.1 - 0.003 16.9 0.1 1.2 8.3 0.0 2.2 1 1 1 2 2 2 2 Transglycosylase SLT domain DUF4227 PF14004.6 CQR54775.1 - 0.14 12.2 1.7 0.94 9.5 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) SASP PF00269.20 CQR54776.1 - 1.6e-23 82.5 0.0 1.8e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 Small, acid-soluble spore proteins, alpha/beta type ATP-cone PF03477.16 CQR54777.1 - 4.3e-17 62.5 0.3 5.8e-17 62.0 0.3 1.2 1 0 0 1 1 1 1 ATP cone domain zf-Dof PF02701.15 CQR54777.1 - 0.021 15.0 0.5 0.038 14.1 0.5 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger Cys_rich_CPXG PF14255.6 CQR54777.1 - 0.093 12.6 1.0 0.2 11.6 1.0 1.6 1 1 0 1 1 1 0 Cysteine-rich CPXCG Zn_Tnp_IS1595 PF12760.7 CQR54777.1 - 0.12 12.3 3.3 0.21 11.6 3.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.6 CQR54777.1 - 0.45 11.5 2.4 9.2 7.4 0.3 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger TerD PF02342.18 CQR54778.1 - 3e-68 229.0 0.0 3.9e-61 205.8 0.0 2.2 2 0 0 2 2 2 2 TerD domain FtsX PF02687.21 CQR54780.1 - 1.7e-12 47.6 23.6 4.3e-09 36.7 6.7 5.4 4 2 2 6 6 6 2 FtsX-like permease family ABC_tran PF00005.27 CQR54781.1 - 4.6e-29 101.7 0.0 6.3e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54781.1 - 3.2e-06 27.2 0.0 0.00094 19.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR54781.1 - 6.4e-05 22.9 0.0 9.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR54781.1 - 8.9e-05 22.2 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR54781.1 - 0.0011 19.3 0.0 0.0016 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR54781.1 - 0.0028 18.2 0.1 0.0057 17.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR54781.1 - 0.0097 15.4 0.1 0.1 12.0 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR54781.1 - 0.023 14.4 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 CQR54781.1 - 0.031 13.9 0.0 0.082 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 CQR54781.1 - 0.041 14.2 0.0 0.089 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain HATPase_c PF02518.26 CQR54782.1 - 7.2e-26 90.9 0.0 1.3e-25 90.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54782.1 - 8.6e-13 48.1 0.0 6.3e-12 45.4 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR54782.1 - 3.7e-05 24.0 0.0 0.00015 22.1 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_5 PF14501.6 CQR54782.1 - 9.3e-05 22.3 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 CQR54782.1 - 0.00027 20.8 0.0 0.00072 19.4 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EIF_2_alpha PF07541.12 CQR54782.1 - 0.013 15.6 0.2 0.027 14.6 0.2 1.5 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit HATPase_c_2 PF13581.6 CQR54782.1 - 0.017 15.1 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MCRA PF06100.11 CQR54782.1 - 0.036 12.9 0.0 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 MCRA family Trans_reg_C PF00486.28 CQR54783.1 - 8.1e-30 102.7 0.0 1.7e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR54783.1 - 7.2e-27 93.8 0.1 1.1e-26 93.2 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain AA_permease_2 PF13520.6 CQR54784.1 - 4.6e-57 193.8 49.0 5.7e-57 193.5 49.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 CQR54784.1 - 6.1e-36 124.0 42.5 1.1e-35 123.2 42.5 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 CQR54784.1 - 3.6e-05 23.8 0.7 3.6e-05 23.8 0.7 4.5 4 1 1 5 5 5 1 C-terminus of AA_permease RELT PF12606.8 CQR54784.1 - 2.3 7.3 4.8 6.4 5.9 4.8 1.8 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 TetR_N PF00440.23 CQR54785.1 - 1e-14 54.0 0.1 2e-14 53.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 CQR54785.1 - 0.11 12.6 0.1 2.5 8.2 0.0 2.4 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain FMN_bind PF04205.14 CQR54786.1 - 2.3e-10 40.9 0.0 3.3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 FMN-binding domain DUF2590 PF10761.9 CQR54786.1 - 0.057 13.6 0.1 0.087 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2590) SNARE PF05739.19 CQR54786.1 - 0.26 11.3 2.0 0.67 10.0 2.0 1.6 1 0 0 1 1 1 0 SNARE domain FMN_red PF03358.15 CQR54787.1 - 6.1e-05 22.8 0.0 0.00019 21.2 0.0 1.7 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 CQR54787.1 - 0.0075 16.0 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Glyoxalase PF00903.25 CQR54788.1 - 1.2e-14 54.6 0.0 2.1e-14 53.8 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 CQR54788.1 - 6.5e-09 35.8 0.0 8.6e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 CQR54788.1 - 2.2e-08 34.3 0.0 3.7e-08 33.6 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 CQR54788.1 - 5.3e-05 24.0 0.0 6e-05 23.8 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain DUF3343 PF11823.8 CQR54788.1 - 0.15 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) HTH_1 PF00126.27 CQR54789.1 - 1.9e-16 59.7 0.0 3.1e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 CQR54789.1 - 1.2e-15 57.5 0.0 1.6e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain SBP_bac_3 PF00497.20 CQR54789.1 - 0.16 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DJ-1_PfpI PF01965.24 CQR54790.1 - 8.2e-20 71.3 0.0 1.6e-19 70.3 0.0 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 CQR54790.1 - 4.2e-10 39.6 0.0 2.6e-08 33.8 0.0 2.1 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase_3 PF07685.14 CQR54790.1 - 0.00062 19.4 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Glycolytic PF00274.19 CQR54791.1 - 8.4e-11 41.2 0.1 5.4e-10 38.5 0.0 2.0 2 0 0 2 2 2 1 Fructose-bisphosphate aldolase class-I PK PF00224.21 CQR54792.1 - 7e-112 373.8 0.1 8.1e-112 373.5 0.1 1.0 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain HpcH_HpaI PF03328.14 CQR54792.1 - 0.017 14.3 0.0 0.043 12.9 0.0 1.6 1 1 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Cass2 PF14526.6 CQR54793.1 - 1.9e-12 47.6 0.7 3.1e-12 46.9 0.7 1.3 1 0 0 1 1 1 1 Integron-associated effector binding protein HTH_18 PF12833.7 CQR54793.1 - 1.1e-09 38.4 0.0 2.2e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GyrI-like PF06445.15 CQR54793.1 - 4e-07 30.5 0.3 6.7e-07 29.7 0.3 1.3 1 0 0 1 1 1 1 GyrI-like small molecule binding domain HTH_AraC PF00165.23 CQR54793.1 - 1.1e-05 25.4 0.6 0.0041 17.2 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Polbeta PF18765.1 CQR54794.1 - 0.00029 20.9 0.0 0.00093 19.2 0.0 1.9 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase FeoC PF09012.10 CQR54794.1 - 0.023 14.7 0.0 0.073 13.1 0.0 1.8 1 0 0 1 1 1 0 FeoC like transcriptional regulator ABC_tran PF00005.27 CQR54795.1 - 1.3e-19 71.1 1.3 0.00033 21.2 0.0 4.4 4 0 0 4 4 4 3 ABC transporter UvrA_inter PF17760.1 CQR54795.1 - 2.9e-18 65.9 0.1 1.1e-17 64.0 0.1 2.0 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 CQR54795.1 - 3.9e-15 56.1 0.0 1.1e-14 54.8 0.0 1.7 1 0 0 1 1 1 1 UvrA DNA-binding domain SMC_N PF02463.19 CQR54795.1 - 2.3e-13 50.1 1.4 0.019 14.4 0.0 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR54795.1 - 3.2e-09 37.0 0.4 0.072 12.8 0.0 4.2 3 1 1 4 4 4 2 AAA ATPase domain RsgA_GTPase PF03193.16 CQR54795.1 - 9.4e-08 32.1 0.1 0.0084 16.0 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 CQR54795.1 - 2.3e-07 30.5 0.1 0.023 14.4 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR54795.1 - 4.3e-06 27.2 0.0 0.07 13.5 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain AAA_21 PF13304.6 CQR54795.1 - 1.6e-05 24.9 6.4 0.19 11.5 0.1 4.4 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 CQR54795.1 - 3e-05 24.6 0.1 0.12 12.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR54795.1 - 0.00015 22.0 0.0 0.84 9.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain DnaJ_CXXCXGXG PF00684.19 CQR54795.1 - 0.00027 21.2 6.6 0.0079 16.5 0.6 3.6 4 0 0 4 4 3 1 DnaJ central domain AAA_23 PF13476.6 CQR54795.1 - 0.00066 20.2 3.3 0.55 10.7 0.5 2.7 2 1 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 CQR54795.1 - 0.0011 18.8 0.0 0.19 11.4 0.0 2.5 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 CQR54795.1 - 0.0021 18.0 0.6 2.6 8.0 0.0 2.8 3 0 0 3 3 3 2 NACHT domain ATPase PF06745.13 CQR54795.1 - 0.0022 17.4 0.0 1.2 8.4 0.0 2.6 2 0 0 2 2 2 1 KaiC cobW PF02492.19 CQR54795.1 - 0.0027 17.3 0.1 0.45 10.1 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 CQR54795.1 - 0.0033 17.3 0.3 1.4 8.8 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_24 PF13479.6 CQR54795.1 - 0.0036 17.1 0.3 1.5 8.5 0.0 3.1 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 CQR54795.1 - 0.0042 16.4 0.0 2.5 7.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 CQR54795.1 - 0.0044 17.0 0.0 1.3 8.8 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea BCA_ABC_TP_C PF12399.8 CQR54795.1 - 0.0058 16.5 0.2 3.2 7.8 0.2 2.5 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.6 CQR54795.1 - 0.0087 15.7 0.0 1.9 8.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 CQR54795.1 - 0.011 15.8 0.3 0.23 11.5 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.6 CQR54795.1 - 0.015 15.3 0.1 8.8 6.4 0.0 2.8 2 0 0 2 2 2 0 AAA domain zf-IS66 PF13005.7 CQR54795.1 - 0.024 15.0 3.5 4.5 7.7 0.0 3.9 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 AAA_33 PF13671.6 CQR54795.1 - 0.076 13.2 0.1 20 5.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 CQR54795.1 - 0.096 12.4 0.2 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 CQR54795.1 - 0.11 12.9 0.0 6.2 7.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Dynamin_N PF00350.23 CQR54795.1 - 0.19 11.7 0.7 1.5 8.8 0.1 2.6 3 0 0 3 3 3 0 Dynamin family AAA_30 PF13604.6 CQR54795.1 - 0.22 11.2 0.2 31 4.2 0.0 2.8 3 0 0 3 3 3 0 AAA domain DUF1272 PF06906.11 CQR54795.1 - 0.3 11.2 5.0 0.73 10.0 0.1 3.3 4 0 0 4 4 3 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 CQR54795.1 - 5.2 7.1 5.1 42 4.2 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbons Anti-TRAP PF15777.5 CQR54795.1 - 6.5 6.8 11.4 9.5 6.3 0.1 4.1 4 1 1 5 5 5 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn-ribbon_8 PF09723.10 CQR54795.1 - 7.3 6.8 16.9 7.2 6.8 0.8 4.1 4 0 0 4 4 3 0 Zinc ribbon domain FGE-sulfatase PF03781.16 CQR54796.1 - 1.6e-41 142.6 5.7 2.3e-40 138.8 5.7 2.3 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 PhdYeFM_antitox PF02604.19 CQR54797.1 - 1.6e-07 31.0 0.1 2.4e-07 30.4 0.1 1.3 1 1 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system ParE_toxin PF05016.15 CQR54798.1 - 0.09 13.4 0.2 0.17 12.5 0.2 1.6 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE UPF0184 PF03670.13 CQR54798.1 - 0.14 12.5 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) ABC_tran PF00005.27 CQR54800.1 - 1.1e-33 116.6 0.0 1.4e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54800.1 - 3.3e-09 37.0 0.4 0.00041 20.2 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR54800.1 - 3.5e-08 33.2 0.6 2.1e-07 30.6 0.6 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR54800.1 - 1.6e-05 24.8 0.1 3.2e-05 23.8 0.0 1.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR54800.1 - 8.5e-05 22.2 0.0 0.00016 21.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 CQR54800.1 - 0.00024 21.1 0.0 0.00047 20.1 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 CQR54800.1 - 0.00088 19.3 0.2 0.045 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR54800.1 - 0.0009 19.2 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 CQR54800.1 - 0.0019 18.7 0.1 0.0029 18.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 CQR54800.1 - 0.0026 17.0 0.1 0.0043 16.3 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 CQR54800.1 - 0.0051 17.2 0.0 0.0095 16.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR54800.1 - 0.0079 16.6 0.0 0.018 15.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR54800.1 - 0.013 15.8 0.4 0.083 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 CQR54800.1 - 0.022 15.0 0.0 0.33 11.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 CQR54800.1 - 0.024 14.6 0.1 0.1 12.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 CQR54800.1 - 0.026 14.0 0.1 0.042 13.4 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 CQR54800.1 - 0.026 14.4 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.14 CQR54800.1 - 0.028 13.7 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain ATPase_2 PF01637.18 CQR54800.1 - 0.029 14.3 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 CQR54800.1 - 0.042 13.6 0.0 0.057 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 CQR54800.1 - 0.049 13.3 0.1 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Spore_IV_A PF09547.10 CQR54800.1 - 0.052 12.5 0.0 0.091 11.7 0.0 1.4 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) T2SSE PF00437.20 CQR54800.1 - 0.076 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MeaB PF03308.16 CQR54800.1 - 0.081 11.9 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_PrkA PF08298.11 CQR54800.1 - 0.085 11.7 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain RNA_helicase PF00910.22 CQR54800.1 - 0.1 13.0 0.1 0.22 12.0 0.1 1.6 1 0 0 1 1 1 0 RNA helicase Adeno_IVa2 PF02456.15 CQR54800.1 - 0.11 11.3 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_27 PF13514.6 CQR54800.1 - 0.12 11.9 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 CQR54800.1 - 0.13 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 CQR54800.1 - 0.17 12.0 0.1 0.43 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 CQR54801.1 - 1.3e-92 310.2 42.3 1.5e-92 309.9 42.3 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 CQR54802.1 - 2e-29 102.9 0.4 2.8e-29 102.4 0.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein LPAM_1 PF08139.12 CQR54802.1 - 0.12 12.9 1.6 0.32 11.6 1.6 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF3558 PF12079.8 CQR54802.1 - 0.13 12.3 2.8 0.22 11.5 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) Bac_luciferase PF00296.20 CQR54803.1 - 2.3e-53 181.7 2.9 2.7e-53 181.4 2.9 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase SMI1_KNR4 PF09346.10 CQR54804.1 - 7e-07 29.7 0.0 1.8e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) SUKH_6 PF14568.6 CQR54804.1 - 3.3e-06 27.5 0.0 7e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_5 PF14567.6 CQR54804.1 - 0.00032 20.5 0.0 0.16 11.7 0.0 2.3 2 0 0 2 2 2 2 SMI1-KNR4 cell-wall Pkinase PF00069.25 CQR54805.1 - 0.047 13.1 0.8 5.3 6.3 0.0 2.1 1 1 1 2 2 2 0 Protein kinase domain SpoU_sub_bind PF08032.12 CQR54805.1 - 0.079 13.2 0.2 0.16 12.3 0.2 1.4 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding DUF2070 PF09843.9 CQR54806.1 - 0.026 12.8 3.8 0.031 12.6 3.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) UcrQ PF02939.16 CQR54806.1 - 0.039 13.9 0.1 0.35 10.8 0.0 2.4 2 0 0 2 2 2 0 UcrQ family TetR_C_6 PF13977.6 CQR54807.1 - 5.2e-20 71.8 0.0 1.1e-19 70.8 0.0 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 CQR54807.1 - 2.1e-09 37.0 0.0 3.8e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 CQR54807.1 - 0.011 16.0 1.5 0.018 15.2 0.1 2.0 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF3572 PF12096.8 CQR54807.1 - 0.028 14.6 0.1 0.18 12.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) RbsD_FucU PF05025.13 CQR54807.1 - 0.13 12.7 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 RbsD / FucU transport protein family DUF1801 PF08818.11 CQR54808.1 - 5.2e-16 58.9 0.0 7.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DU1801) Peptidase_M3 PF01432.20 CQR54809.1 - 9.1e-27 94.4 7.0 4.1e-19 69.2 1.5 2.3 2 0 0 2 2 2 2 Peptidase family M3 Methyltransf_28 PF02636.17 CQR54809.1 - 0.07 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Reprolysin_3 PF13582.6 CQR54809.1 - 0.37 11.3 1.1 1.2 9.7 0.2 2.3 2 1 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like DUF1801 PF08818.11 CQR54810.1 - 1.2e-15 57.7 0.0 1.5e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) Sigma70_r4_2 PF08281.12 CQR54810.1 - 0.16 11.7 0.2 3.5 7.4 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Acetyltransf_1 PF00583.25 CQR54811.1 - 9.9e-07 29.0 0.1 7.9e-06 26.1 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR54811.1 - 0.00013 22.4 0.0 0.00024 21.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR54811.1 - 0.0035 17.4 0.1 0.017 15.2 0.0 2.2 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR54811.1 - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TrmB PF01978.19 CQR54811.1 - 0.071 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FR47 PF08445.10 CQR54811.1 - 0.1 12.5 0.1 0.64 10.0 0.1 2.3 2 1 0 2 2 2 0 FR47-like protein MerR_1 PF13411.6 CQR54812.1 - 6.2e-15 55.0 0.2 1.1e-14 54.2 0.2 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR54812.1 - 2.7e-11 43.0 0.5 5.8e-11 42.0 0.0 1.8 2 0 0 2 2 2 1 MerR family regulatory protein TipAS PF07739.13 CQR54812.1 - 6.6e-11 42.8 0.9 1.9e-10 41.3 0.2 1.9 1 1 1 2 2 2 1 TipAS antibiotic-recognition domain MerR-DNA-bind PF09278.11 CQR54812.1 - 0.0002 21.8 8.8 0.00049 20.6 6.0 2.6 3 0 0 3 3 3 1 MerR, DNA binding DUF3833 PF12915.7 CQR54812.1 - 0.077 12.6 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3833) AP_endonuc_2 PF01261.24 CQR54813.1 - 1.1e-22 80.5 0.0 1.5e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 CQR54813.1 - 0.061 13.7 0.0 1.6 9.1 0.0 2.4 1 1 1 2 2 2 0 Radical SAM superfamily GFO_IDH_MocA PF01408.22 CQR54814.1 - 3.9e-17 63.2 0.0 6.9e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 CQR54814.1 - 0.011 16.4 0.0 0.032 14.9 0.0 1.7 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 CQR54814.1 - 0.02 15.1 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Mur_ligase PF01225.25 CQR54814.1 - 0.073 13.4 0.0 0.39 11.1 0.0 2.1 2 0 0 2 2 2 0 Mur ligase family, catalytic domain Shikimate_DH PF01488.20 CQR54814.1 - 0.11 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UvrD_C PF13361.6 CQR54815.1 - 1.3e-12 47.8 0.1 6.3e-06 25.8 0.0 3.2 2 1 1 3 3 3 2 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.21 CQR54815.1 - 1.2e-10 41.4 4.6 3.5e-09 36.6 0.8 3.2 1 1 1 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 CQR54815.1 - 3.8e-10 40.3 0.0 2.6e-09 37.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 CQR54815.1 - 6.7e-10 38.6 0.0 1.2e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 CQR54815.1 - 4e-08 33.3 0.0 0.0025 17.6 0.0 3.4 2 1 0 2 2 2 2 Viral (Superfamily 1) RNA helicase DEAD PF00270.29 CQR54815.1 - 8.3e-05 22.4 0.1 0.00066 19.5 0.0 2.4 2 1 1 3 3 3 1 DEAD/DEAH box helicase DUF2075 PF09848.9 CQR54815.1 - 0.00028 20.2 1.1 0.02 14.2 0.0 3.2 4 0 0 4 4 4 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 CQR54815.1 - 0.005 16.9 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit zf-C2H2_aberr PF17017.5 CQR54815.1 - 0.035 14.3 0.4 0.089 12.9 0.4 1.6 1 0 0 1 1 1 0 Aberrant zinc-finger Mg_chelatase PF01078.21 CQR54815.1 - 0.058 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI LytTR PF04397.15 CQR54816.1 - 6.8e-24 84.0 0.2 1e-23 83.4 0.2 1.2 1 0 0 1 1 1 1 LytTr DNA-binding domain UPF0300 PF08594.10 CQR54816.1 - 0.022 14.1 0.1 0.026 13.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0300) DUF3021 PF11457.8 CQR54817.1 - 0.006 16.9 6.6 0.01 16.2 6.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3021) YfhO PF09586.10 CQR54817.1 - 0.13 10.5 0.8 0.15 10.3 0.8 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF1129 PF06570.11 CQR54817.1 - 0.65 9.4 4.9 0.71 9.3 4.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2678 PF10856.8 CQR54817.1 - 1.5 8.8 7.4 0.28 11.1 3.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) Amidase PF01425.21 CQR54818.1 - 1.3e-68 232.1 0.0 2.8e-68 230.9 0.0 1.5 1 1 0 1 1 1 1 Amidase Peptidase_S8 PF00082.22 CQR54819.1 - 2.2e-46 158.5 0.0 3e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 Subtilase family VCBS PF13517.6 CQR54819.1 - 0.14 12.7 0.8 0.37 11.4 0.8 1.7 1 0 0 1 1 1 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF4111 PF13427.6 CQR54822.1 - 6.3e-26 90.5 0.0 1.1e-25 89.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4111) Polbeta PF18765.1 CQR54822.1 - 9.9e-06 25.6 0.0 1.8e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 CQR54822.1 - 1.9e-05 24.9 0.0 2.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 CQR54822.1 - 0.011 15.6 0.0 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain TetR_N PF00440.23 CQR54823.1 - 1.4e-14 53.6 0.0 2.5e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_10 PF16295.5 CQR54823.1 - 3.1e-11 43.7 0.0 4.3e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 CQR54823.1 - 7e-05 23.1 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 CQR54823.1 - 0.001 19.2 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region TetR_C_17 PF17922.1 CQR54823.1 - 0.0043 17.1 0.1 0.0075 16.3 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain adh_short PF00106.25 CQR54824.1 - 1.3e-51 174.9 0.1 1.8e-51 174.4 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54824.1 - 2e-37 129.0 0.1 3.1e-37 128.4 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR54824.1 - 2.3e-17 63.5 0.1 3.2e-17 63.0 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 CQR54824.1 - 9.1e-09 35.5 0.1 1.3e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 CQR54824.1 - 3.4e-06 26.7 0.1 4.8e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 CQR54824.1 - 2.2e-05 23.7 0.1 3.1e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain F420_oxidored PF03807.17 CQR54824.1 - 0.0022 18.5 0.2 0.0064 17.0 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DUF1776 PF08643.10 CQR54824.1 - 0.019 14.3 0.0 0.049 13.0 0.0 1.5 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) Helicase_RecD PF05127.14 CQR54824.1 - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Helicase Pyr_redox_3 PF13738.6 CQR54825.1 - 7.2e-14 51.7 0.0 1.2e-12 47.7 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 CQR54825.1 - 2.2e-13 50.0 0.0 6.5e-11 42.0 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 CQR54825.1 - 3.2e-13 50.0 0.0 9.6e-13 48.4 0.0 1.9 1 0 0 1 1 1 1 FAD-NAD(P)-binding DAO PF01266.24 CQR54825.1 - 1.2e-08 35.0 0.7 9.6e-07 28.7 0.7 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR54825.1 - 7.3e-08 32.0 0.0 1.1e-06 28.1 0.0 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR54825.1 - 0.0014 17.5 0.2 0.17 10.5 0.1 2.6 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 CQR54825.1 - 0.0014 17.9 0.0 0.0037 16.6 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 CQR54825.1 - 0.0015 19.0 0.6 0.44 11.1 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 CQR54825.1 - 0.0033 17.8 0.0 0.87 10.1 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 CQR54825.1 - 0.022 15.0 0.1 0.2 11.9 0.0 2.7 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR54825.1 - 0.072 12.2 2.6 0.22 10.6 0.6 2.0 2 0 0 2 2 2 0 FAD binding domain FAD_binding_3 PF01494.19 CQR54825.1 - 0.19 11.0 0.1 0.32 10.2 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.7 CQR54825.1 - 0.21 10.9 0.2 0.31 10.4 0.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Shikimate_DH PF01488.20 CQR54825.1 - 0.26 11.4 0.0 29 4.7 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UbiD PF01977.16 CQR54826.1 - 8.8e-119 397.0 0.0 1.3e-116 389.8 0.0 2.0 2 0 0 2 2 2 2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Cas6b_C PF17262.2 CQR54826.1 - 0.026 14.6 0.0 0.067 13.3 0.0 1.7 1 0 0 1 1 1 0 Cas6b C-terminal domain Acetyltransf_3 PF13302.7 CQR54827.1 - 1.3e-27 97.2 0.1 1.6e-27 96.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR54827.1 - 4.3e-08 33.4 0.1 6.3e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR54827.1 - 5e-06 26.3 0.3 1.3e-05 24.9 0.3 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain WYL PF13280.6 CQR54828.1 - 1.5e-28 100.0 0.2 2e-28 99.6 0.2 1.2 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR54828.1 - 7e-12 45.1 0.0 1.3e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR54828.1 - 2.1e-06 27.3 0.0 4.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR54828.1 - 4.7e-05 23.7 0.5 0.0001 22.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.6 CQR54828.1 - 0.012 15.8 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 CQR54828.1 - 0.021 15.4 0.0 0.058 14.0 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain Put_DNA-bind_N PF06971.13 CQR54828.1 - 0.029 14.4 0.0 0.058 13.4 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus SpoIIID PF12116.8 CQR54828.1 - 0.031 14.4 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D adh_short PF00106.25 CQR54829.1 - 1.6e-26 93.0 0.0 1.6e-25 89.7 0.0 2.0 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR54829.1 - 4.1e-12 46.2 0.0 2.7e-11 43.5 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR54829.1 - 7.4e-06 26.0 0.0 1.3e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR54829.1 - 1.7e-05 24.4 0.0 3.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR54829.1 - 0.069 13.0 0.0 0.26 11.1 0.0 1.9 1 1 0 1 1 1 0 NAD(P)H-binding MerR_1 PF13411.6 CQR54830.1 - 1.4e-16 60.3 0.0 2.2e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR54830.1 - 2.3e-14 52.8 0.4 1.5e-13 50.2 0.0 2.3 3 0 0 3 3 3 1 MerR family regulatory protein HTH_17 PF12728.7 CQR54830.1 - 0.00051 20.2 0.0 0.0019 18.3 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain MerR-DNA-bind PF09278.11 CQR54830.1 - 0.00099 19.6 0.4 0.005 17.3 0.3 1.9 2 0 0 2 2 2 1 MerR, DNA binding HTH_23 PF13384.6 CQR54830.1 - 0.0079 16.0 0.1 0.033 14.0 0.0 2.0 2 1 1 3 3 3 1 Homeodomain-like domain HTH_3 PF01381.22 CQR54830.1 - 0.051 13.6 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix NUMOD1 PF07453.13 CQR54830.1 - 0.17 12.2 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain Glycos_transf_1 PF00534.20 CQR54831.1 - 9.9e-36 122.8 0.0 1.5e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR54831.1 - 3.1e-35 121.5 0.0 4.7e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR54831.1 - 2.7e-31 108.8 0.1 5.7e-31 107.8 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR54831.1 - 8.5e-16 58.8 0.3 8.5e-16 58.8 0.3 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 CQR54831.1 - 4e-09 36.8 0.0 9.2e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 CQR54831.1 - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like KR PF08659.10 CQR54831.1 - 0.17 11.8 0.0 0.73 9.7 0.0 1.8 2 0 0 2 2 2 0 KR domain ABC_tran PF00005.27 CQR54832.1 - 3.6e-33 115.0 0.1 5e-33 114.5 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54832.1 - 8.4e-15 55.4 3.6 3.3e-10 40.3 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 CQR54832.1 - 1.7e-05 24.6 0.0 4.2e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR54832.1 - 0.0042 17.3 0.5 0.015 15.6 0.5 1.8 1 1 0 1 1 1 1 AAA domain DUF2813 PF11398.8 CQR54832.1 - 0.0073 15.6 0.1 0.012 14.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 CQR54832.1 - 0.01 16.3 0.1 0.02 15.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 CQR54832.1 - 0.015 14.7 0.0 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR54832.1 - 0.043 13.6 0.2 0.076 12.8 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 CQR54832.1 - 0.052 13.2 0.0 0.088 12.4 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 CQR54832.1 - 0.073 13.5 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain BetR PF08667.10 CQR54832.1 - 0.13 12.3 0.0 1.1 9.3 0.0 2.2 2 1 0 2 2 2 0 BetR domain AAA_33 PF13671.6 CQR54832.1 - 0.13 12.4 0.1 1.2 9.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR54832.1 - 0.19 11.4 0.1 1 9.0 0.0 1.8 1 1 0 2 2 2 0 AAA ATPase domain ABC2_membrane_4 PF12730.7 CQR54833.1 - 1.1e-17 64.6 3.6 1.7e-17 63.9 3.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR54833.1 - 0.0022 17.2 4.4 0.0022 17.2 4.4 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR54834.1 - 4e-11 43.2 1.5 4e-11 43.2 1.5 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR54834.1 - 1.4 8.1 10.0 2.1 7.5 10.0 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Response_reg PF00072.24 CQR54835.1 - 2.2e-26 92.2 0.0 3.2e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR54835.1 - 5e-23 81.0 0.0 8.2e-23 80.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR54836.1 - 1.4e-18 67.4 0.0 3e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR54836.1 - 4.6e-11 42.9 0.0 1.4e-10 41.4 0.0 1.9 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 CQR54836.1 - 5.2e-11 42.4 0.1 1.8e-10 40.7 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 CQR54836.1 - 0.003 17.5 0.0 0.0069 16.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HPTransfase PF10090.9 CQR54836.1 - 0.045 13.5 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain BAR PF03114.18 CQR54836.1 - 0.16 11.6 0.6 0.36 10.4 0.6 1.5 1 0 0 1 1 1 0 BAR domain Yuri_gagarin PF15934.5 CQR54836.1 - 0.17 11.7 0.3 0.26 11.1 0.3 1.2 1 0 0 1 1 1 0 Yuri gagarin DUF4229 PF14012.6 CQR54836.1 - 0.89 9.7 5.0 0.36 11.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) DUF4199 PF13858.6 CQR54836.1 - 1.7 9.0 5.6 3.7 7.9 0.2 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF4199) ATG22 PF11700.8 CQR54837.1 - 4.8e-72 243.1 28.0 2.4e-67 227.7 20.5 3.0 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like MFS_1 PF07690.16 CQR54837.1 - 2.5e-29 102.3 63.0 5.9e-18 64.9 38.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR54837.1 - 4.7e-08 32.0 26.7 0.00059 18.5 9.9 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein Papilloma_E5A PF05776.12 CQR54837.1 - 0.031 14.6 1.9 0.031 14.6 1.9 2.2 2 0 0 2 2 2 0 Papillomavirus E5A protein Zn_dep_PLPC PF00882.18 CQR54838.1 - 1.7e-07 31.4 4.0 2.2e-07 31.0 3.2 1.6 1 1 0 1 1 1 1 Zinc dependent phospholipase C Glyoxalase PF00903.25 CQR54839.1 - 9.7e-06 25.8 0.6 5.3e-05 23.4 0.6 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 CQR54839.1 - 0.11 13.4 0.0 0.15 12.9 0.0 1.3 1 1 0 1 1 1 0 Glyoxalase-like domain MFS_1 PF07690.16 CQR54840.1 - 7.3e-16 58.0 66.3 2.8e-12 46.3 33.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR54840.1 - 1.5e-10 40.1 29.9 3.4e-10 38.9 29.9 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR54840.1 - 1e-08 34.2 17.5 1e-08 34.2 17.5 3.0 1 1 0 2 2 2 1 MFS/sugar transport protein Phage_holin_2_4 PF16082.5 CQR54840.1 - 0.14 12.0 0.1 0.14 12.0 0.1 2.9 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like TraL PF07178.11 CQR54840.1 - 5 7.7 8.7 0.81 10.2 0.9 3.4 3 0 0 3 3 3 0 TraL protein Aminotran_1_2 PF00155.21 CQR54841.1 - 3.7e-39 134.9 0.0 4.1e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 CQR54841.1 - 2.4e-15 56.2 0.0 3.2e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 CQR54841.1 - 2.3e-05 23.8 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 CQR54841.1 - 0.00019 20.1 0.0 0.00026 19.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 CQR54841.1 - 0.0044 16.4 0.0 0.0081 15.5 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.21 CQR54841.1 - 0.095 11.3 0.0 0.18 10.4 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class-III HTH_18 PF12833.7 CQR54842.1 - 4.5e-21 74.9 0.7 7e-21 74.3 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54842.1 - 3.3e-16 58.9 0.1 3.1e-07 30.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family fn3_3 PF14686.6 CQR54842.1 - 0.14 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.6 CQR54842.1 - 0.15 12.4 0.0 0.41 10.9 0.0 1.8 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain MCPsignal PF00015.21 CQR54843.1 - 4.6e-33 114.4 15.6 4.6e-33 114.4 15.6 4.3 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR54843.1 - 1.7e-13 50.7 1.5 3e-12 46.7 0.1 3.8 3 0 0 3 3 3 1 HAMP domain DUF1664 PF07889.12 CQR54843.1 - 0.009 16.1 3.0 0.009 16.1 3.0 5.0 3 2 2 5 5 5 2 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 CQR54843.1 - 0.018 15.4 2.6 0.018 15.4 2.6 5.5 3 1 2 5 5 5 0 Syntaxin-like protein DUF948 PF06103.11 CQR54843.1 - 0.03 14.6 25.7 0.42 10.9 1.0 6.8 4 2 4 8 8 8 0 Bacterial protein of unknown function (DUF948) UPF0242 PF06785.11 CQR54843.1 - 0.066 13.3 0.2 0.066 13.3 0.2 3.9 2 1 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Laminin_II PF06009.12 CQR54843.1 - 0.091 12.8 30.0 0.11 12.5 1.3 5.2 4 2 3 7 7 7 0 Laminin Domain II ABC_membrane PF00664.23 CQR54843.1 - 0.14 11.7 1.3 9 5.9 0.1 2.5 2 0 0 2 2 2 0 ABC transporter transmembrane region DASH_Duo1 PF08651.10 CQR54843.1 - 0.16 11.7 4.5 1.8 8.4 0.3 3.7 2 0 0 2 2 2 0 DASH complex subunit Duo1 Fibin PF15819.5 CQR54843.1 - 0.2 11.4 0.1 0.2 11.4 0.1 3.6 2 1 0 3 3 3 0 Fin bud initiation factor homologue GCP_N_terminal PF17681.1 CQR54843.1 - 0.22 11.1 9.5 0.019 14.6 2.7 2.2 2 0 0 2 2 2 0 Gamma tubulin complex component N-terminal Vps53_N PF04100.12 CQR54843.1 - 1.4 7.8 17.4 0.082 11.9 4.9 2.5 2 0 0 2 2 2 0 Vps53-like, N-terminal CDT1_C PF16679.5 CQR54843.1 - 2.6 8.5 7.0 4.9 7.7 0.1 4.0 2 2 1 3 3 3 0 DNA replication factor Cdt1 C-terminal domain LMBR1 PF04791.16 CQR54843.1 - 8.2 5.2 16.4 0.28 10.0 5.3 2.3 1 1 0 2 2 2 0 LMBR1-like membrane protein Epimerase PF01370.21 CQR54844.1 - 8.6e-07 28.7 0.1 3e-05 23.6 0.1 2.1 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR54844.1 - 7.9e-06 25.9 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 CQR54844.1 - 0.00045 19.5 0.0 0.1 11.7 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 CQR54844.1 - 0.14 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Sigma70_r4_2 PF08281.12 CQR54845.1 - 4.1e-17 61.6 0.4 3.1e-16 58.8 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR54845.1 - 9.9e-13 47.7 0.1 2e-12 46.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR54845.1 - 2.7e-08 33.2 0.0 7.4e-08 31.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR54845.1 - 0.048 13.5 0.2 0.079 12.8 0.2 1.4 1 0 0 1 1 1 0 ECF sigma factor CLP_protease PF00574.23 CQR54846.1 - 2.4e-83 278.5 0.3 2.8e-83 278.3 0.3 1.0 1 0 0 1 1 1 1 Clp protease DUF4314 PF14192.6 CQR54848.1 - 0.0098 15.8 0.1 1.9 8.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4314) DUF1033 PF06279.11 CQR54848.1 - 0.063 13.5 0.3 0.13 12.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1033) Sacchrp_dh_C PF16653.5 CQR54849.1 - 2.9e-41 142.3 0.0 3.9e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 CQR54849.1 - 1.6e-37 128.7 0.2 2.5e-37 128.1 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 CQR54849.1 - 0.00019 21.5 0.0 0.00031 20.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 CQR54849.1 - 0.0011 18.4 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 CQR54849.1 - 0.022 15.3 0.0 0.038 14.6 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.17 CQR54849.1 - 0.17 11.0 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain DapB_N PF01113.20 CQR54849.1 - 0.18 11.9 0.1 0.36 11.0 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Orn_DAP_Arg_deC PF00278.22 CQR54850.1 - 4.4e-11 42.9 0.0 5.5e-11 42.6 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Cu_amine_oxidN1 PF07833.11 CQR54851.1 - 1.1e-18 67.5 0.0 2.4e-18 66.4 0.0 1.6 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain RCC1 PF00415.18 CQR54851.1 - 0.0011 19.6 2.4 0.014 16.0 0.1 3.2 3 0 0 3 3 3 1 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 CQR54851.1 - 0.039 14.2 0.2 46 4.7 0.0 4.5 4 0 0 4 4 4 0 Two component regulator propeller Ubiquitin_3 PF14836.6 CQR54851.1 - 0.17 11.9 0.0 0.66 10.0 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin-like domain RCC1_2 PF13540.6 CQR54851.1 - 0.24 11.2 2.0 12 5.8 0.1 3.9 4 0 0 4 4 4 0 Regulator of chromosome condensation (RCC1) repeat dNK PF01712.19 CQR54852.1 - 8.5e-50 169.4 0.1 9.5e-50 169.3 0.1 1.0 1 0 0 1 1 1 1 Deoxynucleoside kinase Thymidylate_kin PF02223.17 CQR54852.1 - 3e-11 43.3 1.7 2.2e-10 40.5 1.1 2.3 1 1 1 2 2 2 1 Thymidylate kinase AAA_33 PF13671.6 CQR54852.1 - 1.2e-08 35.2 0.0 2e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR54852.1 - 1.6e-07 31.9 0.0 2.6e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 CQR54852.1 - 5.3e-05 23.5 0.0 0.00033 21.0 0.0 1.8 1 1 0 2 2 2 1 AAA domain AAA_17 PF13207.6 CQR54852.1 - 0.00025 21.5 0.0 0.93 9.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain SKI PF01202.22 CQR54852.1 - 0.00052 20.2 0.1 0.29 11.2 0.0 2.4 2 0 0 2 2 2 2 Shikimate kinase AAA PF00004.29 CQR54852.1 - 0.0012 19.2 0.4 0.0036 17.7 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 CQR54852.1 - 0.0013 19.0 0.0 0.012 15.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 CQR54852.1 - 0.0049 16.6 0.1 0.017 14.9 0.0 1.8 2 0 0 2 2 2 1 Cytidylate kinase TsaE PF02367.17 CQR54852.1 - 0.0085 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 CQR54852.1 - 0.009 16.5 0.0 0.016 15.8 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 CQR54852.1 - 0.032 14.6 0.2 0.15 12.5 0.2 2.0 1 1 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 CQR54852.1 - 0.036 13.5 0.2 1.6 8.1 0.0 2.4 2 1 0 2 2 2 0 PhoH-like protein Cytidylate_kin2 PF13189.6 CQR54852.1 - 0.043 14.0 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Cytidylate kinase-like family RuvB_N PF05496.12 CQR54852.1 - 0.043 13.6 0.0 0.087 12.6 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 CQR54852.1 - 0.056 13.4 0.1 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 NTPase CoaE PF01121.20 CQR54852.1 - 0.072 12.8 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 Dephospho-CoA kinase NACHT PF05729.12 CQR54852.1 - 0.11 12.4 0.1 0.26 11.2 0.1 1.7 1 1 0 1 1 1 0 NACHT domain cobW PF02492.19 CQR54852.1 - 0.12 12.0 0.0 0.35 10.4 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain dNK PF01712.19 CQR54853.1 - 1.4e-63 214.5 0.0 1.5e-63 214.3 0.0 1.0 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 CQR54853.1 - 9.9e-07 29.4 0.0 1.6e-06 28.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 CQR54853.1 - 0.0018 18.0 0.1 0.19 11.4 0.0 2.3 3 0 0 3 3 2 1 Thymidylate kinase AAA_28 PF13521.6 CQR54853.1 - 0.0028 17.9 0.0 0.0044 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR54853.1 - 0.0029 17.9 0.0 0.0059 16.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 CQR54853.1 - 0.0067 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_tran PF00005.27 CQR54853.1 - 0.0072 16.8 0.0 0.0082 16.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TsaE PF02367.17 CQR54853.1 - 0.011 15.8 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 CQR54853.1 - 0.03 14.7 0.0 0.047 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 CQR54853.1 - 0.064 13.6 0.1 0.27 11.7 0.0 2.0 3 0 0 3 3 2 0 RNA helicase ParA PF10609.9 CQR54853.1 - 0.072 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_33 PF13671.6 CQR54853.1 - 0.073 13.2 0.0 0.35 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 CQR54853.1 - 0.075 13.1 0.8 0.16 12.0 0.8 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 CQR54853.1 - 0.076 13.4 0.0 0.78 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 CQR54853.1 - 0.077 12.8 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 CQR54853.1 - 0.087 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase SKI PF01202.22 CQR54853.1 - 0.091 12.9 0.0 1.4 9.0 0.0 2.7 2 2 0 2 2 2 0 Shikimate kinase ArsA_ATPase PF02374.15 CQR54853.1 - 0.11 11.7 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_14 PF13173.6 CQR54853.1 - 0.11 12.6 0.0 0.46 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.6 CQR54853.1 - 0.11 12.6 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 Cytidylate kinase-like family GTP_EFTU PF00009.27 CQR54853.1 - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA PF00004.29 CQR54853.1 - 0.17 12.3 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 CQR54853.1 - 0.2 11.4 0.0 0.48 10.1 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase DUF3305 PF11749.8 CQR54855.1 - 0.064 13.4 0.1 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3305) Big_3 PF07523.12 CQR54855.1 - 0.27 11.6 4.0 5.2 7.4 0.1 4.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) HYR PF02494.16 CQR54855.1 - 4.2 7.8 6.9 9.9 6.6 0.1 3.7 3 0 0 3 3 3 0 HYR domain SLH PF00395.20 CQR54856.1 - 1e-27 95.9 2.0 1.7e-09 37.5 0.0 4.1 3 0 0 3 3 3 3 S-layer homology domain CelD_N PF02927.14 CQR54856.1 - 0.029 15.2 0.3 0.46 11.4 0.1 3.1 2 0 0 2 2 2 0 Cellulase N-terminal ig-like domain Glyco_hydro_38C PF07748.13 CQR54856.1 - 0.18 11.8 0.2 0.41 10.7 0.2 1.6 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 C-terminal domain CHB_HEX_C_1 PF13290.6 CQR54857.1 - 2.2e-29 101.2 14.4 3.2e-15 55.9 2.1 3.1 2 0 0 2 2 2 2 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 CQR54857.1 - 7.1e-29 99.7 12.7 1.5e-16 60.2 0.8 3.3 2 0 0 2 2 2 2 Fn3 associated SLH PF00395.20 CQR54857.1 - 1.9e-24 85.4 7.2 1.7e-14 53.6 0.0 5.4 4 0 0 4 4 4 3 S-layer homology domain CHB_HEX_C PF03174.13 CQR54857.1 - 9e-05 22.4 0.2 0.66 10.0 0.0 3.1 3 0 0 3 3 3 2 Chitobiase/beta-hexosaminidase C-terminal domain Glug PF07581.12 CQR54857.1 - 0.0037 17.6 331.5 0.015 15.6 1.0 48.0 52 0 0 52 52 52 16 The GLUG motif Trypsin_2 PF13365.6 CQR54858.1 - 1.3e-21 78.1 0.3 1.7e-21 77.7 0.3 1.1 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 CQR54858.1 - 9.2e-06 25.6 0.1 3.7e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 Trypsin DUF31 PF01732.16 CQR54858.1 - 0.03 13.9 0.3 0.24 10.9 0.3 2.1 1 1 1 2 2 2 0 Putative peptidase (DUF31) Peptidase_S46 PF10459.9 CQR54858.1 - 0.1 11.2 2.6 3.9 6.0 0.0 2.3 2 1 1 3 3 3 0 Peptidase S46 Response_reg PF00072.24 CQR54859.1 - 5.8e-12 45.8 0.1 6.5e-12 45.6 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 CQR54859.1 - 0.091 12.8 0.1 0.13 12.3 0.1 1.3 1 1 0 1 1 1 0 B12 binding domain Peripla_BP_2 PF01497.18 CQR54859.1 - 0.14 11.7 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein Aminotran_1_2 PF00155.21 CQR54860.1 - 1.3e-36 126.5 0.0 1.5e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF5625 PF18539.1 CQR54860.1 - 0.049 13.9 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5625) Cu_amine_oxidN1 PF07833.11 CQR54861.1 - 6.9e-28 97.0 0.1 1.7e-27 95.8 0.1 1.7 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain Glyco_hydro_18 PF00704.28 CQR54861.1 - 7.1e-13 48.9 1.0 6.4e-11 42.5 1.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 SMP_2 PF10144.9 CQR54861.1 - 0.02 14.6 0.5 0.66 9.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial virulence factor haemolysin WHAMM-JMY_N PF15920.5 CQR54861.1 - 0.15 11.9 0.1 20 5.1 0.0 2.4 2 0 0 2 2 2 0 N-terminal of Junction-mediating and WASP homolog-associated HTH_3 PF01381.22 CQR54862.1 - 2.6e-16 59.4 0.0 1.6e-15 56.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix TPR_2 PF07719.17 CQR54862.1 - 7.3e-15 53.8 1.8 3.7e-05 23.5 0.0 4.9 5 0 0 5 5 4 3 Tetratricopeptide repeat HTH_19 PF12844.7 CQR54862.1 - 1.6e-11 44.0 0.0 3.8e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TPR_1 PF00515.28 CQR54862.1 - 3.1e-11 42.6 3.0 0.00047 19.9 0.1 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 CQR54862.1 - 4.2e-11 42.7 2.2 0.34 11.8 0.1 5.4 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 CQR54862.1 - 6.5e-10 39.4 1.0 1.1e-05 25.8 0.1 4.0 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 CQR54862.1 - 1.6e-07 31.5 3.6 1.5e-06 28.4 0.0 3.2 2 1 0 3 3 3 1 Tetratricopeptide repeat HTH_31 PF13560.6 CQR54862.1 - 3.3e-07 30.5 0.0 6.2e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TPR_16 PF13432.6 CQR54862.1 - 6.9e-07 29.8 1.4 0.00096 19.8 0.0 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 CQR54862.1 - 2.7e-06 27.2 5.5 0.12 12.6 0.1 4.7 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 CQR54862.1 - 6.8e-06 26.4 1.8 3.7 8.4 0.0 5.5 4 1 1 5 5 5 1 Tetratricopeptide repeat HTH_26 PF13443.6 CQR54862.1 - 1e-05 25.9 0.1 2.2e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain TPR_7 PF13176.6 CQR54862.1 - 1.6e-05 24.6 1.9 0.77 9.9 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_11 PF13414.6 CQR54862.1 - 5.8e-05 22.7 0.1 4 7.2 0.0 3.5 3 0 0 3 3 3 2 TPR repeat TPR_9 PF13371.6 CQR54862.1 - 0.0065 16.6 1.6 0.11 12.7 0.0 2.8 3 0 0 3 3 2 1 Tetratricopeptide repeat P22_Cro PF14549.6 CQR54862.1 - 0.027 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_24 PF13412.6 CQR54862.1 - 0.027 14.0 0.7 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 CQR54862.1 - 0.032 14.1 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 CQR54862.1 - 0.034 14.3 0.0 0.35 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain TPR_17 PF13431.6 CQR54862.1 - 0.082 13.3 0.6 98 3.7 0.0 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat HTH_23 PF13384.6 CQR54862.1 - 0.1 12.4 0.0 0.45 10.4 0.0 2.1 1 0 0 1 1 1 0 Homeodomain-like domain Closter_coat PF01785.17 CQR54862.1 - 0.13 11.5 0.0 7.9 5.7 0.0 2.2 2 0 0 2 2 2 0 Closterovirus coat protein HTH_11 PF08279.12 CQR54862.1 - 0.13 12.3 0.1 0.37 10.8 0.1 1.8 1 0 0 1 1 1 0 HTH domain TPR_10 PF13374.6 CQR54862.1 - 0.23 11.4 1.6 4.5 7.3 0.0 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat Radical_SAM PF04055.21 CQR54863.1 - 2.6e-17 63.7 0.4 3.5e-17 63.3 0.4 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR54863.1 - 5.6e-07 29.9 1.7 1.5e-06 28.5 1.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR54863.1 - 0.019 15.1 0.6 0.044 13.9 0.6 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Coatamer_beta_C PF07718.12 CQR54863.1 - 0.041 13.8 0.1 0.061 13.2 0.1 1.4 1 0 0 1 1 1 0 Coatomer beta C-terminal region MCPsignal PF00015.21 CQR54864.1 - 8.8e-28 97.3 17.9 8.8e-28 97.3 17.9 4.9 2 1 2 5 5 5 1 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR54864.1 - 3.6e-26 92.5 0.2 3.6e-26 92.5 0.2 3.0 3 0 0 3 3 3 1 Cache domain sCache_3_2 PF17203.4 CQR54864.1 - 7.4e-10 39.1 1.7 9.6e-05 22.5 0.0 3.3 2 2 1 3 3 3 2 Single cache domain 3 Cache_3-Cache_2 PF17201.4 CQR54864.1 - 2e-07 30.6 0.3 2e-07 30.6 0.3 3.1 3 1 0 3 3 3 1 Cache 3/Cache 2 fusion domain dCache_2 PF08269.11 CQR54864.1 - 0.00029 20.1 2.3 0.0074 15.5 0.0 3.1 3 0 0 3 3 3 1 Cache domain sCache_2 PF17200.4 CQR54864.1 - 0.0018 18.1 6.6 0.0065 16.3 0.1 3.3 4 0 0 4 4 4 1 Single Cache domain 2 HAMP PF00672.25 CQR54864.1 - 0.014 15.8 0.0 0.17 12.3 0.0 3.0 1 0 0 1 1 1 0 HAMP domain Toprim_N PF08275.11 CQR54864.1 - 0.097 12.7 0.0 0.3 11.1 0.0 1.8 1 0 0 1 1 1 0 DNA primase catalytic core, N-terminal domain DUF1664 PF07889.12 CQR54864.1 - 0.24 11.4 14.5 2.3 8.3 0.7 4.7 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) CDC37_C PF08564.10 CQR54864.1 - 2.9 8.1 8.7 0.21 11.7 0.2 3.4 4 1 0 4 4 4 0 Cdc37 C terminal domain COG2 PF06148.11 CQR54864.1 - 4.2 7.5 10.2 7 6.7 0.5 3.7 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 ParB PF08775.10 CQR54864.1 - 7.6 7.0 13.1 0.25 11.8 0.2 4.0 3 2 1 4 4 4 0 ParB family HTH_18 PF12833.7 CQR54865.1 - 1.8e-21 76.2 0.1 3.7e-19 68.8 0.0 2.8 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54865.1 - 2.1e-12 46.8 0.0 7.2e-07 29.2 0.0 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR54865.1 - 0.019 15.2 0.1 0.43 10.9 0.0 2.6 2 1 0 2 2 2 0 GGDEF-like domain Mor PF08765.11 CQR54866.1 - 0.0058 16.6 0.1 0.037 14.0 0.1 1.9 1 1 0 1 1 1 1 Mor transcription activator family tRNA-synt_His PF13393.6 CQR54867.1 - 1.3e-38 133.0 0.0 2.1e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 CQR54867.1 - 1.2e-14 54.2 0.1 3e-14 52.9 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain Transglut_core3 PF13471.6 CQR54867.1 - 0.051 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily Transketolase_C PF02780.20 CQR54867.1 - 0.15 11.9 0.5 0.51 10.2 0.2 2.0 2 0 0 2 2 2 0 Transketolase, C-terminal domain HD PF01966.22 CQR54868.1 - 3.1e-06 27.4 0.1 8.8e-06 25.9 0.1 1.8 1 1 0 1 1 1 1 HD domain DEAD PF00270.29 CQR54869.1 - 1.1e-46 158.8 0.0 2.1e-46 157.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR54869.1 - 1.9e-30 105.5 0.0 2.3e-29 102.0 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.15 CQR54869.1 - 3.2e-20 71.9 1.5 9.1e-20 70.4 1.5 1.9 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 CQR54869.1 - 9.5e-11 42.0 0.0 3.3e-10 40.2 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 CQR54869.1 - 0.00035 20.9 0.0 0.014 15.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain CMS1 PF14617.6 CQR54869.1 - 0.0044 16.4 0.0 0.0094 15.3 0.0 1.5 1 0 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.6 CQR54869.1 - 0.032 14.0 0.0 0.079 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Flavi_DEAD PF07652.14 CQR54869.1 - 0.057 13.4 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Flavivirus DEAD domain ERCC3_RAD25_C PF16203.5 CQR54869.1 - 0.11 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 CQR54869.1 - 0.12 12.6 0.3 0.53 10.5 0.1 2.2 2 1 0 2 2 2 0 AAA domain PRD PF00874.20 CQR54870.1 - 3.1e-38 130.0 7.5 2e-19 69.7 0.0 2.4 2 0 0 2 2 2 2 PRD domain CAT_RBD PF03123.15 CQR54870.1 - 7.4e-22 77.1 5.4 7.4e-22 77.1 5.4 2.0 2 0 0 2 2 2 1 CAT RNA binding domain PTS_EIIA_1 PF00358.20 CQR54871.1 - 7.3e-50 168.0 0.7 1.3e-49 167.2 0.7 1.4 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIC PF02378.18 CQR54871.1 - 1.4e-24 86.7 40.9 1.4e-24 86.7 40.9 1.7 2 0 0 2 2 2 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR54871.1 - 4.6e-16 58.0 0.5 1.3e-15 56.6 0.5 1.8 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl_2 PF13533.6 CQR54871.1 - 5.6e-05 22.9 0.1 0.00038 20.2 0.0 2.3 2 0 0 2 2 2 1 Biotin-lipoyl like Peptidase_M23 PF01551.22 CQR54871.1 - 0.0042 17.3 2.6 0.088 13.0 0.1 3.5 4 0 0 4 4 4 1 Peptidase family M23 Biotin_lipoyl PF00364.22 CQR54871.1 - 0.054 13.3 2.2 0.63 9.9 0.0 3.3 3 0 0 3 3 3 0 Biotin-requiring enzyme Trans_reg_C PF00486.28 CQR54871.1 - 0.15 12.2 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal YqfD PF06898.11 CQR54871.1 - 0.16 10.8 0.0 0.33 9.8 0.0 1.4 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Glyco_hydro_1 PF00232.18 CQR54872.1 - 5.5e-134 447.0 0.3 6.4e-134 446.8 0.3 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 CQR54872.1 - 6.1e-05 22.6 0.4 0.00015 21.3 0.1 1.7 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) FAD_oxidored PF12831.7 CQR54874.1 - 6.7e-100 335.5 0.3 1.9e-99 333.9 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase F5_F8_type_C PF00754.25 CQR54874.1 - 6.5e-08 32.8 0.1 0.00045 20.3 0.0 2.6 3 0 0 3 3 3 2 F5/8 type C domain FAD_binding_2 PF00890.24 CQR54874.1 - 1.5e-07 30.9 3.9 1e-06 28.1 3.7 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 CQR54874.1 - 2.8e-07 30.7 1.5 7.5e-07 29.3 1.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 CQR54874.1 - 1.1e-06 28.0 2.0 1.6e-06 27.5 2.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 CQR54874.1 - 6.7e-06 25.9 1.9 6.9e-06 25.9 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR54874.1 - 2.5e-05 24.7 1.3 0.00087 19.8 0.4 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 CQR54874.1 - 4.9e-05 22.7 1.9 0.00028 20.2 1.9 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 CQR54874.1 - 0.0007 18.9 0.9 0.0013 18.1 0.9 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 CQR54874.1 - 0.0016 17.2 1.4 0.0026 16.5 1.4 1.3 1 0 0 1 1 1 1 HI0933-like protein GCV_T PF01571.21 CQR54874.1 - 0.0022 17.4 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain Pyr_redox_3 PF13738.6 CQR54874.1 - 0.029 13.6 0.1 0.062 12.5 0.0 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR54874.1 - 0.095 11.9 0.4 0.17 11.1 0.4 1.4 1 0 0 1 1 1 0 Thi4 family Lycopene_cycl PF05834.12 CQR54874.1 - 0.1 11.6 0.1 0.17 10.9 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein W_rich_C PF07483.11 CQR54874.1 - 0.11 12.6 0.1 3.2 8.0 0.0 2.7 2 0 0 2 2 2 0 Tryptophan-rich Synechocystis species C-terminal domain HTH_18 PF12833.7 CQR54875.1 - 2e-24 85.7 2.1 4.6e-24 84.5 2.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54875.1 - 3.7e-20 71.5 0.0 1.4e-11 44.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.23 CQR54875.1 - 0.00058 19.6 0.1 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, tetR family PNKP_ligase PF16542.5 CQR54875.1 - 0.0067 16.0 0.4 0.0087 15.6 0.4 1.1 1 0 0 1 1 1 1 PNKP adenylyltransferase domain, ligase domain MarR_2 PF12802.7 CQR54875.1 - 0.0092 15.8 2.3 1.4 8.9 0.5 3.0 1 1 1 2 2 2 2 MarR family HTH_24 PF13412.6 CQR54875.1 - 0.042 13.4 0.3 5.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 CQR54875.1 - 0.057 13.2 0.9 3.8 7.4 0.2 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR54875.1 - 0.13 12.2 3.8 0.61 10.0 0.2 3.0 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Y1_Tnp PF01797.16 CQR54876.1 - 5.9e-38 129.7 1.4 7.2e-38 129.4 1.4 1.1 1 0 0 1 1 1 1 Transposase IS200 like PadR PF03551.14 CQR54877.1 - 6.1e-21 74.2 0.2 8.6e-21 73.7 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 CQR54877.1 - 0.00029 21.4 0.0 0.00035 21.2 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein TrmB PF01978.19 CQR54877.1 - 0.0031 17.4 0.0 0.015 15.2 0.0 2.0 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AphA_like PF14557.6 CQR54877.1 - 0.0087 15.8 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator RBD-FIP PF09457.10 CQR54877.1 - 0.044 13.7 0.0 0.22 11.5 0.1 2.0 3 0 0 3 3 3 0 FIP domain PaaX PF07848.12 CQR54877.1 - 0.088 13.0 0.2 0.37 11.1 0.2 1.9 1 1 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.20 CQR54877.1 - 0.14 12.1 0.0 0.51 10.2 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family T4BSS_DotI_IcmL PF11393.8 CQR54878.1 - 0.018 14.5 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Type-IV b secretion system, inner-membrane complex component ABC_membrane PF00664.23 CQR54879.1 - 8.3e-54 183.1 10.5 1.1e-53 182.7 10.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR54879.1 - 2.5e-35 122.0 0.0 4.5e-35 121.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR54879.1 - 5.2e-09 35.9 0.0 4.6e-08 32.8 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_membrane_3 PF13748.6 CQR54879.1 - 8.9e-06 25.1 8.5 0.00071 18.9 2.0 2.5 2 1 0 2 2 2 2 ABC transporter transmembrane region AAA_16 PF13191.6 CQR54879.1 - 0.002 18.5 0.0 0.0051 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 CQR54879.1 - 0.0034 17.1 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 CQR54879.1 - 0.0064 16.9 0.0 0.049 14.1 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 CQR54879.1 - 0.017 15.4 0.1 0.38 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 CQR54879.1 - 0.035 14.0 0.0 0.089 12.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 CQR54879.1 - 0.05 12.9 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 CQR54879.1 - 0.051 14.1 0.0 0.095 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 CQR54879.1 - 0.062 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 CQR54879.1 - 0.078 12.7 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.20 CQR54879.1 - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 CQR54879.1 - 0.13 11.8 0.0 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain YjcZ_2 PF09680.10 CQR54880.1 - 0.012 15.2 7.1 0.012 15.2 7.1 1.9 2 0 0 2 2 2 0 Family of unknown function Phage_Gp23 PF10669.9 CQR54880.1 - 0.16 12.3 1.1 0.16 12.3 1.1 1.0 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) MFS_1 PF07690.16 CQR54881.1 - 7.7e-24 84.3 95.9 3.1e-18 65.8 56.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR54881.1 - 0.00016 20.7 27.3 0.011 14.6 4.6 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 CQR54881.1 - 0.0014 18.0 25.2 0.0014 18.0 25.2 2.1 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB Methyltransf_25 PF13649.6 CQR54882.1 - 8.5e-18 64.9 0.0 1.5e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR54882.1 - 7.2e-17 61.8 0.0 1.2e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR54882.1 - 2.6e-16 59.9 0.0 4.8e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR54882.1 - 2e-13 50.4 0.0 2.8e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR54882.1 - 7e-13 49.2 0.0 1.2e-12 48.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 CQR54882.1 - 1.5e-06 27.9 0.0 2.2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 CQR54882.1 - 6.1e-06 25.7 0.0 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 CQR54882.1 - 8.7e-06 25.6 0.0 1.3e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 CQR54882.1 - 1.6e-05 24.9 0.0 2.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 CQR54882.1 - 0.00049 19.8 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 CQR54882.1 - 0.00064 19.4 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 CQR54882.1 - 0.00099 18.6 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 CQR54882.1 - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 CQR54882.1 - 0.011 15.0 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain MetW PF07021.12 CQR54882.1 - 0.062 12.9 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW LysE PF01810.18 CQR54883.1 - 3.7e-10 39.6 6.6 4.6e-10 39.3 6.6 1.1 1 0 0 1 1 1 1 LysE type translocator AsnC_trans_reg PF01037.21 CQR54884.1 - 2.4e-20 72.3 0.0 3.7e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 CQR54884.1 - 2.7e-15 55.6 0.0 4.6e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 CQR54884.1 - 8.7e-15 54.3 0.1 1.4e-14 53.6 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 CQR54884.1 - 5.3e-05 23.1 0.0 8.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR54884.1 - 0.00014 21.7 0.0 0.00025 20.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 CQR54884.1 - 0.00018 21.5 0.0 0.00035 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR54884.1 - 0.0011 19.0 0.1 0.0018 18.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 CQR54884.1 - 0.0048 16.8 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DDRGK PF09756.9 CQR54884.1 - 0.024 14.2 0.0 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 DDRGK domain HTH_Crp_2 PF13545.6 CQR54884.1 - 0.026 14.5 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 CQR54884.1 - 0.049 13.6 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF501 PF04417.12 CQR54884.1 - 0.07 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF501) HTH_10 PF04967.12 CQR54884.1 - 0.13 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 CQR54884.1 - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEDD_Tnp_IS110 PF01548.17 CQR54885.1 - 1.3e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.16 CQR54885.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DUF4618 PF15397.6 CQR54885.1 - 0.16 11.4 2.9 0.91 8.9 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Ldh_1_C PF02866.18 CQR54886.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain Beta-lactamase PF00144.24 CQR54887.1 - 1.3e-69 235.0 0.5 1.9e-69 234.4 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase Toluene_X PF03349.16 CQR54887.1 - 0.078 11.5 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Outer membrane protein transport protein (OMPP1/FadL/TodX) Peptidase_S11 PF00768.20 CQR54887.1 - 0.11 12.0 0.1 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase Bac_rhodopsin PF01036.18 CQR54887.1 - 0.35 10.4 5.9 0.58 9.7 5.9 1.2 1 0 0 1 1 1 0 Bacteriorhodopsin-like protein Response_reg PF00072.24 CQR54888.1 - 2.9e-29 101.5 0.1 4.1e-29 101.0 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR54888.1 - 1.4e-27 95.5 0.0 1.4e-27 95.5 0.0 1.9 3 0 0 3 3 3 1 Transcriptional regulatory protein, C terminal C-C_Bond_Lyase PF15617.6 CQR54888.1 - 0.12 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold HATPase_c PF02518.26 CQR54889.1 - 4.7e-20 72.2 0.0 8.6e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54889.1 - 6.8e-16 58.1 3.2 2.5e-15 56.3 0.1 3.0 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR54889.1 - 2.6e-10 40.5 0.0 8.2e-10 38.9 0.0 1.9 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR54889.1 - 0.0018 18.1 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR54889.1 - 0.02 14.9 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF1729 PF08354.10 CQR54889.1 - 0.056 12.3 0.2 0.088 11.7 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1729) SKA2 PF16740.5 CQR54889.1 - 0.058 13.2 1.1 0.1 12.4 1.1 1.4 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 SbsC_C PF18058.1 CQR54889.1 - 0.13 12.5 0.4 0.23 11.7 0.4 1.4 1 0 0 1 1 1 0 SbsC C-terminal domain Terpene_synth_C PF03936.16 CQR54889.1 - 0.15 11.4 0.4 1.2 8.4 0.1 2.0 2 0 0 2 2 2 0 Terpene synthase family, metal binding domain Transposase_mut PF00872.18 CQR54890.1 - 1.8e-102 343.1 0.1 2.3e-102 342.7 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 CQR54890.1 - 1.4e-05 25.4 0.0 4.1e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 CQR54890.1 - 2.9e-05 24.3 0.0 0.026 14.8 0.1 2.4 1 1 0 2 2 2 2 DDE domain Latarcin PF10279.9 CQR54890.1 - 0.033 14.6 0.0 0.12 12.7 0.0 2.1 1 1 0 1 1 1 0 Latarcin precursor Sigma70_r2 PF04542.14 CQR54891.1 - 7.1e-16 57.7 0.7 1.3e-15 56.9 0.7 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR54891.1 - 1.6e-10 40.5 2.5 2.3e-10 40.0 0.7 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 DUF134 PF02001.16 CQR54891.1 - 0.0044 17.5 0.1 0.0072 16.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 CQR54891.1 - 0.0053 16.2 1.8 0.0057 16.1 0.5 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 ABC_tran PF00005.27 CQR54893.1 - 3.1e-31 108.7 0.0 4.7e-31 108.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54893.1 - 1.7e-12 47.8 0.5 8.5e-06 25.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR54893.1 - 0.00018 21.1 0.0 0.45 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR54893.1 - 0.00028 21.5 0.1 0.00048 20.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR54893.1 - 0.0004 20.2 0.1 0.0015 18.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR54893.1 - 0.00069 19.9 0.3 0.003 17.8 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR54893.1 - 0.00077 19.9 0.1 0.0019 18.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR54893.1 - 0.0022 17.7 0.1 0.0046 16.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 CQR54893.1 - 0.0028 17.8 0.0 0.015 15.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR54893.1 - 0.0044 16.8 0.0 1.3 8.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.29 CQR54893.1 - 0.016 15.7 0.0 0.028 14.9 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 CQR54893.1 - 0.027 13.2 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 CQR54893.1 - 0.033 13.8 0.1 0.059 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 CQR54893.1 - 0.049 13.6 0.2 0.13 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF3584 PF12128.8 CQR54893.1 - 0.099 10.1 0.5 0.14 9.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 CQR54893.1 - 0.1 12.5 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 CQR54893.1 - 0.14 11.5 0.1 0.24 10.8 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 CQR54893.1 - 0.15 12.0 0.2 0.39 10.6 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.6 CQR54893.1 - 0.15 12.6 0.1 0.22 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 CQR54893.1 - 0.15 11.8 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal ABC2_membrane_3 PF12698.7 CQR54894.1 - 2.2e-14 53.4 1.0 2.2e-14 53.4 1.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR54894.1 - 0.0029 17.0 6.5 0.032 13.5 6.5 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein PAS_3 PF08447.12 CQR54896.1 - 4.9e-59 196.6 0.0 2.7e-16 59.6 0.0 6.9 6 1 0 6 6 6 6 PAS fold PAS_9 PF13426.7 CQR54896.1 - 2.4e-56 188.4 0.0 9.6e-13 48.3 0.0 6.2 6 0 0 6 6 6 5 PAS domain PAS PF00989.25 CQR54896.1 - 7.1e-49 164.5 0.0 2.1e-11 43.8 0.0 6.6 6 1 0 6 6 6 6 PAS fold PAS_4 PF08448.10 CQR54896.1 - 2.2e-41 140.5 0.0 2.1e-10 40.8 0.0 7.2 6 1 0 6 6 6 6 PAS fold HATPase_c PF02518.26 CQR54896.1 - 6.4e-28 97.5 0.5 1.5e-27 96.3 0.5 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR54896.1 - 9.8e-27 93.3 0.1 3.1e-26 91.7 0.1 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 CQR54896.1 - 1.5e-20 72.8 0.0 0.0027 17.7 0.0 5.5 5 0 0 5 5 5 4 PAS domain HisKA PF00512.25 CQR54896.1 - 5.7e-20 71.1 0.2 2.1e-19 69.3 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.6 CQR54896.1 - 1.6e-11 44.3 0.0 0.00024 21.2 0.0 5.5 5 0 0 5 5 5 2 PAS domain PAS_12 PF18095.1 CQR54896.1 - 9.6e-05 22.1 0.0 0.27 10.9 0.0 4.4 5 0 0 5 5 5 1 UPF0242 C-terminal PAS-like domain PAS_7 PF12860.7 CQR54896.1 - 0.00068 19.8 0.2 0.29 11.3 0.0 4.7 6 1 0 6 6 6 1 PAS fold NusG_II PF07009.11 CQR54897.1 - 2.6e-24 85.5 0.0 3.5e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 NusG domain II DUF2104 PF09877.9 CQR54897.1 - 0.064 13.5 0.1 0.095 13.0 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2104) DUF1980 PF09323.10 CQR54898.1 - 3.6e-29 101.9 0.0 1.9e-28 99.6 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF1980) ArsP_1 PF03773.13 CQR54899.1 - 3.3e-64 216.9 13.2 3.3e-64 216.9 13.2 1.3 2 0 0 2 2 2 1 Predicted permease cobW PF02492.19 CQR54900.1 - 3.8e-39 134.1 0.0 4.7e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 CQR54900.1 - 2.5e-10 40.2 0.0 5.3e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain AAA_33 PF13671.6 CQR54900.1 - 0.00059 20.0 0.4 0.0075 16.4 0.4 2.3 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 CQR54900.1 - 0.0015 18.4 0.1 0.0047 16.8 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.14 CQR54900.1 - 0.019 14.1 0.2 0.11 11.5 0.1 2.0 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.6 CQR54900.1 - 0.037 14.3 0.1 0.29 11.4 0.1 2.5 2 1 0 2 2 2 0 AAA domain DUF2374 PF09574.10 CQR54900.1 - 0.079 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (Duf2374) Viral_helicase1 PF01443.18 CQR54900.1 - 0.087 12.6 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 CQR54900.1 - 0.17 12.4 0.1 0.41 11.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 CQR54900.1 - 0.17 11.1 0.1 0.33 10.2 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 CQR54900.1 - 0.2 10.7 0.7 0.48 9.4 0.4 1.7 1 1 0 1 1 1 0 Type II/IV secretion system protein Pox_A32 PF04665.12 CQR54900.1 - 0.21 11.0 0.2 0.67 9.4 0.0 1.8 2 0 0 2 2 2 0 Poxvirus A32 protein Ribosomal_L33 PF00471.20 CQR54901.1 - 2.4e-22 79.1 1.9 2.6e-22 79.0 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L33 cobW PF02492.19 CQR54902.1 - 7.3e-58 195.1 0.2 9.9e-58 194.6 0.2 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 CQR54902.1 - 7.5e-26 89.9 0.1 1.9e-24 85.4 0.1 2.8 2 1 0 2 2 2 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 CQR54902.1 - 0.00015 21.7 1.0 0.21 11.5 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 CQR54902.1 - 0.0032 17.1 0.0 0.5 9.9 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MobB PF03205.14 CQR54902.1 - 0.012 15.5 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 CQR54902.1 - 0.012 14.7 0.1 0.024 13.7 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 CQR54902.1 - 0.014 15.3 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 CQR54902.1 - 0.029 14.7 0.1 0.056 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 CQR54902.1 - 0.075 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 CQR54902.1 - 0.085 11.8 0.1 1.6 7.6 0.0 2.5 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 CQR54902.1 - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.6 CQR54902.1 - 0.26 11.8 1.3 0.32 11.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 CQR54903.1 - 4e-30 105.1 0.0 5.1e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54903.1 - 4.7e-10 39.7 0.0 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_1 PF03266.15 CQR54903.1 - 0.0042 17.0 0.0 0.064 13.2 0.0 2.1 1 1 1 2 2 2 1 NTPase SbcCD_C PF13558.6 CQR54903.1 - 0.025 14.8 0.0 0.14 12.4 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 CQR54903.1 - 0.051 13.6 0.0 0.13 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 CQR54903.1 - 0.068 12.6 0.0 7 6.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR54903.1 - 0.086 13.3 0.1 0.14 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR54903.1 - 0.088 12.6 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR54903.1 - 0.1 12.9 0.1 0.72 10.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 CQR54903.1 - 0.12 11.3 0.0 3.3 6.6 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Rad17 PF03215.15 CQR54903.1 - 0.21 11.5 0.0 0.64 9.9 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain ABC-3 PF00950.17 CQR54904.1 - 7.3e-70 235.4 28.1 8.4e-70 235.2 28.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 CQR54904.1 - 6.6e-07 28.6 28.1 6.6e-07 28.6 28.1 1.6 1 1 0 1 1 1 1 FecCD transport family ZnuA PF01297.17 CQR54905.1 - 4.3e-81 272.1 3.4 5.2e-81 271.8 3.4 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Zip PF02535.22 CQR54905.1 - 0.071 12.3 0.5 0.084 12.1 0.5 1.3 1 0 0 1 1 1 0 ZIP Zinc transporter Ribosomal_S14 PF00253.21 CQR54906.1 - 3.7e-27 93.8 0.2 5.4e-27 93.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e FR47 PF08445.10 CQR54908.1 - 2e-08 34.1 0.0 4.4e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 CQR54908.1 - 3.9e-07 30.3 0.1 5.6e-07 29.8 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR54908.1 - 0.00019 21.4 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR54908.1 - 0.00065 20.1 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR54908.1 - 0.0054 17.4 0.0 0.0088 16.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR54908.1 - 0.055 13.5 0.0 0.85 9.7 0.0 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Methyltransf_11 PF08241.12 CQR54909.1 - 3.9e-09 37.0 0.0 6e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54909.1 - 9.2e-07 29.5 0.0 1.7e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR54909.1 - 6e-06 26.9 0.0 1.1e-05 26.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR54909.1 - 1e-05 25.5 0.0 1.4e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 CQR54909.1 - 0.07 12.6 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain Methyltransf_31 PF13847.6 CQR54909.1 - 0.11 12.3 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Lactamase_B PF00753.27 CQR54910.1 - 3.2e-33 115.4 5.9 3.9e-33 115.1 5.9 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR54910.1 - 1.4e-09 37.8 0.0 3.1e-09 36.6 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 CQR54910.1 - 0.078 12.9 0.1 0.74 9.8 0.0 2.2 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain HTH_23 PF13384.6 CQR54911.1 - 5e-05 23.0 0.3 0.44 10.4 0.3 2.5 2 0 0 2 2 2 2 Homeodomain-like domain HTH_26 PF13443.6 CQR54911.1 - 0.0001 22.6 0.0 0.00044 20.6 0.0 1.9 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR54911.1 - 0.00011 22.2 0.0 0.00017 21.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix YdaS_antitoxin PF15943.5 CQR54911.1 - 0.00085 19.1 0.0 0.0071 16.2 0.0 2.1 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 CQR54911.1 - 0.0059 16.7 0.1 2.5 8.3 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_17 PF12728.7 CQR54911.1 - 0.0061 16.7 0.0 0.42 10.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR54911.1 - 0.028 14.3 0.4 0.049 13.6 0.4 1.3 1 0 0 1 1 1 0 HTH domain Phage_CI_repr PF07022.13 CQR54911.1 - 0.031 14.3 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_Tnp_1 PF01527.20 CQR54911.1 - 0.068 13.5 0.3 11 6.4 0.0 3.0 2 1 1 3 3 3 0 Transposase HTH_19 PF12844.7 CQR54911.1 - 0.074 13.1 0.0 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Dabb PF07876.12 CQR54912.1 - 3.2e-23 82.2 0.8 3.5e-23 82.1 0.8 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain FixQ PF05545.11 CQR54913.1 - 0.1 12.6 0.5 0.12 12.4 0.5 1.1 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ PsbT PF01405.17 CQR54913.1 - 0.28 11.0 2.9 0.39 10.6 2.9 1.2 1 0 0 1 1 1 0 Photosystem II reaction centre T protein DUF86 PF01934.17 CQR54914.1 - 5.3e-08 32.7 0.0 8e-08 32.2 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF86 HTH_11 PF08279.12 CQR54915.1 - 3.8e-06 26.8 0.1 8.4e-06 25.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 CQR54915.1 - 1.2e-05 25.3 0.2 3.2e-05 23.9 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR54915.1 - 4.1e-05 23.0 0.0 8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 CQR54915.1 - 0.00011 21.9 0.1 0.00028 20.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 CQR54915.1 - 0.00032 20.4 0.1 0.00077 19.2 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain ATC_hydrolase PF14196.6 CQR54915.1 - 0.00089 20.1 1.8 0.0023 18.7 1.8 1.7 1 1 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase HTH_29 PF13551.6 CQR54915.1 - 0.0075 16.3 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix MarR_2 PF12802.7 CQR54915.1 - 0.0082 16.0 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR54915.1 - 0.013 15.4 0.2 0.023 14.6 0.2 1.4 1 0 0 1 1 1 0 MarR family GntR PF00392.21 CQR54915.1 - 0.015 14.9 0.5 0.031 13.9 0.5 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family V4R PF02830.18 CQR54915.1 - 0.025 14.6 3.1 0.077 13.0 3.1 1.8 1 1 0 1 1 1 0 V4R domain Sigma70_r4 PF04545.16 CQR54915.1 - 0.037 13.5 0.1 0.12 11.9 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 DUF2075 PF09848.9 CQR54915.1 - 0.056 12.7 0.0 0.071 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) YtxH PF12732.7 CQR54916.1 - 1.6e-15 57.3 12.6 9.5e-14 51.7 12.6 2.3 1 1 0 1 1 1 1 YtxH-like protein Spore_III_AF PF09581.10 CQR54916.1 - 0.37 10.8 2.6 0.46 10.5 2.6 1.2 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Asp_Glu_race PF01177.22 CQR54917.1 - 1.7e-38 132.8 0.1 1.9e-38 132.5 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase B12-binding PF02310.19 CQR54917.1 - 0.11 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain Peptidase_M14 PF00246.24 CQR54918.1 - 3.5e-30 105.8 0.0 1.8e-29 103.5 0.0 1.8 1 1 0 1 1 1 1 Zinc carboxypeptidase LysM PF01476.20 CQR54918.1 - 2.6e-14 53.0 0.0 1.5e-05 24.9 0.0 3.0 3 0 0 3 3 3 2 LysM domain Fe-S_biosyn PF01521.20 CQR54920.1 - 0.00079 19.6 0.0 0.00096 19.3 0.0 1.2 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis DUF1450 PF07293.11 CQR54921.1 - 3.4e-12 46.0 0.1 4e-12 45.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1450) Aldo_ket_red PF00248.21 CQR54922.1 - 4.3e-51 173.9 0.0 4.1e-49 167.4 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HATPase_c PF02518.26 CQR54923.1 - 2e-21 76.6 0.0 3e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR54923.1 - 5.7e-12 45.5 0.0 1.1e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR54923.1 - 2.7e-05 24.0 0.0 4.6e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR54923.1 - 0.0027 17.6 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.24 CQR54924.1 - 2.4e-26 92.1 0.0 3.4e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR54924.1 - 1.3e-22 79.7 0.0 2.1e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal ABC_tran PF00005.27 CQR54925.1 - 8.2e-31 107.3 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR54925.1 - 9e-11 42.1 0.4 5e-05 23.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR54925.1 - 2.2e-05 25.0 0.2 3.9e-05 24.2 0.0 1.4 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.6 CQR54925.1 - 0.00049 19.8 0.1 0.00095 18.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR54925.1 - 0.0025 17.8 0.1 0.0043 17.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 CQR54925.1 - 0.004 16.6 0.0 0.011 15.2 0.0 1.6 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR54925.1 - 0.0049 17.3 0.0 0.0075 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 CQR54925.1 - 0.0049 16.6 0.0 0.096 12.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain MukB PF04310.12 CQR54925.1 - 0.0077 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 MukB N-terminal AAA_22 PF13401.6 CQR54925.1 - 0.017 15.4 0.0 0.044 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 CQR54925.1 - 0.047 12.5 0.1 0.092 11.5 0.1 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_33 PF13671.6 CQR54925.1 - 0.048 13.8 0.0 0.2 11.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR54925.1 - 0.059 13.1 0.1 0.14 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 CQR54925.1 - 0.2 10.3 0.0 0.26 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain FeoB_C PF07664.12 CQR54926.1 - 1.2 8.9 9.4 1.5 8.5 0.1 3.6 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus ABC2_membrane_3 PF12698.7 CQR54926.1 - 3.7 6.6 27.5 0.041 13.0 16.2 2.4 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF4097 PF13349.6 CQR54927.1 - 6.9e-12 45.2 5.1 6.3e-09 35.6 0.1 2.0 1 1 1 2 2 2 2 Putative adhesin YscJ_FliF PF01514.17 CQR54927.1 - 0.035 13.8 0.6 3.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family UPF0020 PF01170.18 CQR54928.1 - 8.6e-52 175.7 0.0 1.1e-51 175.4 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 CQR54928.1 - 6e-10 39.4 0.0 9.6e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 CQR54928.1 - 4.2e-06 26.4 0.0 1.5e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain AviRa PF11599.8 CQR54928.1 - 2.8e-05 23.7 0.2 0.015 14.8 0.0 3.3 3 1 1 4 4 4 1 RRNA methyltransferase AviRa N6_Mtase PF02384.16 CQR54928.1 - 0.00051 19.4 0.0 0.0021 17.4 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 CQR54928.1 - 0.00069 19.4 0.0 0.056 13.2 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54928.1 - 0.0034 18.1 0.0 0.036 14.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 CQR54928.1 - 0.033 13.6 0.0 0.19 11.1 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 CQR54928.1 - 0.11 12.1 0.0 9.9 5.8 0.0 2.6 3 0 0 3 3 3 0 Conserved hypothetical protein 95 Methyltransf_3 PF01596.17 CQR54929.1 - 3.7e-38 130.8 0.0 4e-38 130.7 0.0 1.0 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 CQR54929.1 - 5.6e-11 43.4 0.0 8.8e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 CQR54929.1 - 0.00066 19.5 0.0 0.00086 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MFS_1 PF07690.16 CQR54930.1 - 2.2e-71 240.6 56.8 7.4e-49 166.5 30.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR54930.1 - 1e-20 73.9 24.4 7.7e-12 44.8 8.7 2.9 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 CQR54930.1 - 4.2e-16 58.9 30.6 1.7e-07 30.5 10.5 3.4 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.6 CQR54930.1 - 6.2e-16 58.0 27.8 2.5e-11 42.8 12.3 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.13 CQR54930.1 - 9.7e-14 50.6 24.2 1.2e-13 50.3 24.2 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.19 CQR54930.1 - 1.1e-07 31.0 26.8 0.0014 17.5 5.3 3.1 2 1 1 3 3 3 3 LacY proton/sugar symporter MFS_5 PF05631.14 CQR54930.1 - 0.00038 19.5 13.5 0.013 14.4 2.8 2.2 1 1 0 2 2 2 2 Sugar-tranasporters, 12 TM ATG22 PF11700.8 CQR54930.1 - 0.0037 15.9 18.6 0.087 11.4 9.1 2.2 2 0 0 2 2 2 2 Vacuole effluxer Atg22 like BT1 PF03092.16 CQR54930.1 - 0.0048 15.2 8.0 0.025 12.8 0.2 2.5 2 1 0 2 2 2 2 BT1 family Gly-zipper_Omp PF13488.6 CQR54930.1 - 0.84 9.7 12.0 8.4 6.5 0.8 3.9 3 0 0 3 3 3 0 Glycine zipper URO-D PF01208.17 CQR54931.1 - 6.2e-117 390.6 0.0 7e-117 390.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Ferrochelatase PF00762.19 CQR54932.1 - 1.4e-78 264.2 0.0 1.6e-78 264.0 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase NCE101 PF11654.8 CQR54932.1 - 0.042 13.6 0.1 0.12 12.1 0.1 1.8 1 0 0 1 1 1 0 Non-classical export protein 1 Amino_oxidase PF01593.24 CQR54933.1 - 1.2e-46 160.0 0.0 1.4e-46 159.8 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 CQR54933.1 - 8.1e-10 38.8 0.0 2.4e-09 37.3 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 CQR54933.1 - 4e-05 23.4 0.1 0.00012 21.8 0.0 1.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase MCRA PF06100.11 CQR54933.1 - 0.00058 18.8 0.0 0.00081 18.3 0.0 1.2 1 0 0 1 1 1 1 MCRA family Pyr_redox_2 PF07992.14 CQR54933.1 - 0.0026 17.1 0.0 0.0069 15.7 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR54933.1 - 0.007 15.6 0.3 0.018 14.3 0.0 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 CQR54933.1 - 0.0098 15.0 0.0 0.02 14.0 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 CQR54933.1 - 0.042 12.7 0.0 0.06 12.2 0.0 1.1 1 0 0 1 1 1 0 Tryptophan halogenase HI0933_like PF03486.14 CQR54933.1 - 0.042 12.5 0.1 0.064 11.9 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein EF-hand_8 PF13833.6 CQR54934.1 - 0.0035 17.1 0.0 2.5e+02 1.6 0.0 5.9 7 0 0 7 7 7 0 EF-hand domain pair DUF3224 PF11528.8 CQR54934.1 - 0.0043 16.8 1.2 3.2 7.6 0.3 2.6 1 1 2 3 3 3 3 Protein of unknown function (DUF3224) DUF4440 PF14534.6 CQR54934.1 - 0.021 15.2 1.8 23 5.4 0.1 3.4 1 1 5 6 6 6 0 Domain of unknown function (DUF4440) PGA_cap PF09587.10 CQR54935.1 - 9.1e-75 251.4 0.1 1.2e-74 251.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DUF202 PF02656.15 CQR54935.1 - 0.073 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF5316 PF17247.2 CQR54935.1 - 0.15 12.1 0.1 0.27 11.3 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5316) GDPD PF03009.17 CQR54936.1 - 4.8e-41 141.2 0.0 9.2e-41 140.3 0.0 1.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 CQR54936.1 - 0.11 12.9 0.4 1.2 9.7 0.1 2.3 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family FAA_hydrolase PF01557.18 CQR54937.1 - 8.7e-37 126.9 0.0 1e-36 126.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF92 PF01940.16 CQR54938.1 - 2.3e-65 220.3 8.4 2.6e-65 220.1 8.4 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 XK-related PF09815.9 CQR54938.1 - 0.03 13.4 0.2 0.043 12.9 0.2 1.3 1 0 0 1 1 1 0 XK-related protein TetR_N PF00440.23 CQR54939.1 - 3.2e-18 65.2 0.7 3.2e-18 65.2 0.7 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 CQR54939.1 - 0.043 14.0 0.0 0.14 12.4 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 CQR54939.1 - 0.095 12.9 0.1 0.24 11.5 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_IclR PF09339.10 CQR54939.1 - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_7 PF02796.15 CQR54939.1 - 0.16 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase ABC_tran PF00005.27 CQR54940.1 - 5.3e-49 166.2 0.0 7.5e-24 84.8 0.0 3.0 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR54940.1 - 3.3e-18 66.5 9.0 0.00096 19.0 0.3 5.0 4 1 1 5 5 5 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_Xtn PF12848.7 CQR54940.1 - 1.1e-15 57.5 15.4 4.9e-15 55.3 3.7 3.4 3 0 0 3 3 3 1 ABC transporter ABC_tran_CTD PF16326.5 CQR54940.1 - 3.4e-15 56.1 8.6 3.4e-15 56.1 8.6 2.4 2 0 0 2 2 2 1 ABC transporter C-terminal domain SMC_N PF02463.19 CQR54940.1 - 3.4e-10 39.7 3.2 0.0029 17.1 0.0 4.1 3 1 1 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR54940.1 - 8.8e-07 28.6 0.3 0.0074 16.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Dynamin_N PF00350.23 CQR54940.1 - 9.7e-07 29.0 0.5 0.087 12.9 0.0 3.4 4 1 0 4 4 3 2 Dynamin family MMR_HSR1 PF01926.23 CQR54940.1 - 1.2e-05 25.3 0.1 0.01 15.9 0.0 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.6 CQR54940.1 - 0.00013 21.8 1.8 0.17 11.5 0.0 2.7 3 0 0 3 3 2 2 AAA ATPase domain AAA_13 PF13166.6 CQR54940.1 - 0.00013 20.8 1.9 1.7 7.2 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 CQR54940.1 - 0.00019 21.2 3.4 1.1 8.9 0.0 3.7 4 0 0 4 4 3 2 AAA domain AAA_16 PF13191.6 CQR54940.1 - 0.00021 21.7 2.9 0.043 14.2 0.0 3.1 3 1 0 3 3 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR54940.1 - 0.00025 21.0 0.2 0.021 14.7 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase NACHT PF05729.12 CQR54940.1 - 0.00028 20.8 0.0 0.21 11.5 0.0 2.7 2 0 0 2 2 2 1 NACHT domain MeaB PF03308.16 CQR54940.1 - 0.0003 19.9 0.6 0.21 10.6 0.0 2.5 3 0 0 3 3 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 CQR54940.1 - 0.00034 21.2 0.2 1.2 9.7 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 CQR54940.1 - 0.0006 20.0 0.1 0.74 10.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 CQR54940.1 - 0.00098 18.9 0.1 0.93 9.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain T2SSE PF00437.20 CQR54940.1 - 0.0013 17.8 0.2 0.025 13.7 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA PF00004.29 CQR54940.1 - 0.0019 18.6 0.2 0.7 10.3 0.0 2.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 CQR54940.1 - 0.003 18.1 0.2 0.003 18.1 0.2 4.1 3 1 1 4 4 3 1 AAA domain AAA_22 PF13401.6 CQR54940.1 - 0.0031 17.8 0.0 1.2 9.4 0.0 3.1 3 0 0 3 3 2 1 AAA domain NB-ARC PF00931.22 CQR54940.1 - 0.011 15.0 0.2 0.34 10.1 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 CQR54940.1 - 0.013 15.6 0.0 2 8.4 0.0 3.3 4 0 0 4 4 2 0 AAA domain RNA_helicase PF00910.22 CQR54940.1 - 0.014 15.8 0.0 0.91 9.9 0.0 2.5 2 0 0 2 2 2 0 RNA helicase cobW PF02492.19 CQR54940.1 - 0.034 13.7 0.5 1 8.9 0.1 2.6 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 CQR54940.1 - 0.036 14.0 0.5 0.73 9.7 0.0 2.5 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 CQR54940.1 - 0.056 13.7 5.2 1.7 8.9 0.0 3.8 4 0 0 4 4 4 0 AAA domain Roc PF08477.13 CQR54940.1 - 0.069 13.4 0.0 7.6 6.8 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_5 PF07728.14 CQR54940.1 - 0.083 12.9 0.1 2.5 8.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 CQR54940.1 - 0.15 11.7 0.7 8.8 5.9 0.0 2.8 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.18 CQR54940.1 - 0.16 11.3 0.2 9 5.6 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_17 PF13207.6 CQR54940.1 - 0.74 10.2 3.7 7.4 7.0 0.1 3.1 3 0 0 3 3 3 0 AAA domain U1snRNP70_N PF12220.8 CQR54940.1 - 0.86 10.3 4.5 23 5.7 0.1 2.5 2 0 0 2 2 2 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal ATP_bind_1 PF03029.17 CQR54940.1 - 1.4 8.7 3.8 9.9 5.9 0.0 2.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein DUF87 PF01935.17 CQR54940.1 - 4.4 7.3 11.1 7.7 6.5 0.0 3.8 4 1 0 4 4 4 0 Helicase HerA, central domain TPR_5 PF12688.7 CQR54941.1 - 1.3e-16 60.9 0.7 4.3e-13 49.6 0.0 2.1 1 1 1 2 2 2 2 Tetratrico peptide repeat TPR_8 PF13181.6 CQR54941.1 - 4.5e-11 42.1 0.6 0.11 12.8 0.0 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 CQR54941.1 - 8.9e-11 41.7 1.9 0.13 13.2 0.0 4.3 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 CQR54941.1 - 1.1e-10 42.0 0.3 0.00048 20.7 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 CQR54941.1 - 4.4e-10 38.9 2.1 0.17 12.0 0.0 4.8 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 CQR54941.1 - 1.8e-09 37.0 1.5 0.31 11.2 0.0 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 CQR54941.1 - 8.3e-08 31.9 2.8 0.17 11.8 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 CQR54941.1 - 8.9e-08 32.5 1.2 0.0024 18.4 0.0 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 CQR54941.1 - 2.8e-07 30.7 0.6 9.4 7.1 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_1 PF00515.28 CQR54941.1 - 4.6e-07 29.4 0.7 0.19 11.6 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_20 PF14561.6 CQR54941.1 - 3.2e-06 27.4 0.2 0.012 15.9 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR54941.1 - 4.1e-06 27.0 6.2 0.031 14.6 2.1 3.8 3 2 0 3 3 3 2 Tetratricopeptide repeat TPR_4 PF07721.14 CQR54941.1 - 4.5e-05 23.7 2.2 2.7 8.8 0.5 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_15 PF13429.6 CQR54941.1 - 0.0016 17.7 0.3 0.36 10.0 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR54941.1 - 0.0025 18.0 0.0 0.37 11.0 0.0 2.4 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 CQR54941.1 - 0.0056 17.0 3.2 4.1 8.0 0.0 4.4 5 0 0 5 5 4 1 Tetratricopeptide repeat PC_rep PF01851.22 CQR54941.1 - 0.01 16.2 3.3 11 6.7 0.0 3.4 3 0 0 3 3 3 0 Proteasome/cyclosome repeat Endopep_inhib PF16800.5 CQR54942.1 - 4.5e-10 39.7 0.0 5.6e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 IseA DL-endopeptidase inhibitor NAGPA PF09992.9 CQR54943.1 - 7.4e-06 26.3 0.1 1.1e-05 25.6 0.1 1.4 1 1 0 1 1 1 1 Phosphodiester glycosidase DUF3328 PF11807.8 CQR54943.1 - 0.13 12.0 0.1 0.18 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) Peptidase_M42 PF05343.14 CQR54944.1 - 2e-78 263.4 0.0 2.4e-78 263.1 0.0 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 CQR54944.1 - 5.6e-08 32.7 0.0 2.3e-07 30.7 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 LapA_dom PF06305.11 CQR54945.1 - 3.2e-14 52.5 4.2 6.1e-14 51.6 0.0 2.0 2 0 0 2 2 2 1 Lipopolysaccharide assembly protein A domain DivIC PF04977.15 CQR54945.1 - 0.00011 21.9 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Septum formation initiator Silic_transp PF03842.13 CQR54945.1 - 0.039 12.3 0.3 0.039 12.3 0.3 1.0 1 0 0 1 1 1 0 Silicon transporter Vpu PF00558.19 CQR54945.1 - 0.22 11.3 0.8 0.48 10.2 0.0 1.7 2 0 0 2 2 2 0 Vpu protein DUF4199 PF13858.6 CQR54945.1 - 0.24 11.8 3.2 0.31 11.4 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Phage_holin_2_3 PF16080.5 CQR54945.1 - 0.98 9.2 4.4 0.73 9.6 0.8 2.2 2 0 0 2 2 2 0 Bacteriophage holin family HP1 Peptidase_M3 PF01432.20 CQR54946.1 - 6.7e-74 249.8 5.6 6.7e-74 249.8 5.6 1.9 3 0 0 3 3 3 1 Peptidase family M3 Peptidase_M3_N PF08439.10 CQR54946.1 - 1.2e-22 80.0 0.9 5.8e-22 77.7 0.9 2.3 1 0 0 1 1 1 1 Oligopeptidase F Peptidase_M78 PF06114.13 CQR54946.1 - 0.0084 16.0 0.0 0.032 14.1 0.0 2.0 1 0 0 1 1 1 1 IrrE N-terminal-like domain 7tm_3 PF00003.22 CQR54947.1 - 0.01 15.6 1.0 0.011 15.4 1.0 1.0 1 0 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF2157 PF09925.9 CQR54947.1 - 0.1 12.4 1.9 0.13 12.0 1.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) LapA_dom PF06305.11 CQR54947.1 - 8 6.4 8.1 1.5 8.7 0.7 2.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain FeoB_associated PF12669.7 CQR54947.1 - 8.5 6.9 10.2 6 7.4 0.3 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein CSD PF00313.22 CQR54949.1 - 4.2e-31 106.6 1.0 4.5e-31 106.5 1.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 CQR54949.1 - 0.00036 20.2 0.2 0.00056 19.5 0.2 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain RVT_1 PF00078.27 CQR54950.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR54950.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR54950.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase MFS_1_like PF12832.7 CQR54951.1 - 6.2e-50 170.1 30.3 1e-49 169.4 30.3 1.2 1 0 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 CQR54951.1 - 2.5e-25 89.1 67.5 1.9e-21 76.4 39.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.16 CQR54951.1 - 9.6e-14 51.2 26.5 1.6e-13 50.4 26.5 1.3 1 1 0 1 1 1 1 Nucleoside H+ symporter LacY_symp PF01306.19 CQR54951.1 - 4.8e-13 48.7 27.8 7.1e-13 48.1 27.8 1.1 1 0 0 1 1 1 1 LacY proton/sugar symporter DUF2600 PF10776.9 CQR54952.1 - 2.3e-141 470.4 0.0 2.7e-141 470.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2600) PFK PF00365.20 CQR54953.1 - 5.4e-105 350.8 0.8 6.3e-105 350.6 0.8 1.0 1 0 0 1 1 1 1 Phosphofructokinase DAGK_cat PF00781.24 CQR54953.1 - 0.0089 15.6 0.4 0.082 12.5 0.1 2.3 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Phytase-like PF13449.6 CQR54954.1 - 8.1e-59 199.9 0.3 1.1e-58 199.5 0.3 1.2 1 0 0 1 1 1 1 Esterase-like activity of phytase Cu_amine_oxidN1 PF07833.11 CQR54954.1 - 0.0044 17.5 0.0 0.013 15.9 0.0 1.8 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain SdiA-regulated PF06977.11 CQR54954.1 - 0.013 14.8 0.0 0.12 11.6 0.0 2.4 3 0 0 3 3 3 0 SdiA-regulated MatE PF01554.18 CQR54955.1 - 3.5e-60 202.3 28.1 3.8e-33 114.4 11.5 3.2 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 CQR54955.1 - 3.1e-11 43.5 10.2 3.1e-11 43.5 10.2 5.0 2 2 3 5 5 5 1 Polysaccharide biosynthesis C-terminal domain DUF3481 PF11980.8 CQR54955.1 - 0.09 12.5 0.9 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 C-terminal domain of neuropilin glycoprotein DUF4015 PF13200.6 CQR54956.1 - 1.3e-127 425.2 0.3 1.5e-127 425.0 0.3 1.0 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain GHL6 PF14871.6 CQR54956.1 - 0.00044 20.4 0.0 0.0012 19.0 0.0 1.7 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 YitT_membrane PF02588.15 CQR54958.1 - 1.5e-55 187.8 17.6 1.8e-55 187.5 17.6 1.1 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2179 PF10035.9 CQR54958.1 - 2.6e-20 71.9 0.4 2.6e-20 71.9 0.4 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2179) DEAD PF00270.29 CQR54959.1 - 1.8e-50 171.1 0.2 3.5e-50 170.2 0.2 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR54959.1 - 1e-33 116.0 0.1 6.3e-33 113.4 0.0 2.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR54959.1 - 4.9e-05 23.4 0.0 8.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 CQR54959.1 - 0.011 15.6 0.0 0.024 14.5 0.0 1.6 1 1 0 1 1 1 0 Helicase CMS1 PF14617.6 CQR54959.1 - 0.017 14.5 0.2 0.04 13.2 0.1 1.6 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit UTP25 PF06862.12 CQR54959.1 - 0.06 12.1 0.0 4.7 5.9 0.0 2.7 3 0 0 3 3 3 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_22 PF13401.6 CQR54959.1 - 0.097 12.9 1.2 0.21 11.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain ERCC3_RAD25_C PF16203.5 CQR54959.1 - 0.17 11.1 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF624 PF04854.14 CQR54960.1 - 2.3e-21 75.7 9.9 2.3e-21 75.7 9.9 3.7 3 2 0 3 3 3 1 Protein of unknown function, DUF624 60KD_IMP PF02096.20 CQR54960.1 - 0.00074 19.5 9.9 0.35 10.8 10.5 2.4 2 0 0 2 2 2 2 60Kd inner membrane protein FAM176 PF14851.6 CQR54960.1 - 0.056 13.1 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 FAM176 family Viral_cys_rich PF08008.12 CQR54960.1 - 0.14 12.2 0.3 5.6 7.1 0.1 2.6 2 1 1 3 3 3 0 Viral cysteine rich DUF4446 PF14584.6 CQR54960.1 - 1.9 8.5 6.7 3.2 7.7 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) tRNA_anti-like PF12869.7 CQR54960.1 - 6.2 6.4 5.8 52 3.4 5.8 2.1 1 1 0 1 1 1 0 tRNA_anti-like DUF1499 PF07386.11 CQR54961.1 - 2.9e-07 31.1 0.0 3.4e-07 30.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1499) Redoxin PF08534.10 CQR54962.1 - 2e-20 73.0 0.0 2.4e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 CQR54962.1 - 1.9e-16 60.1 0.0 2.3e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Rhomboid PF01694.22 CQR54963.1 - 1.1e-34 119.5 13.6 1.1e-34 119.5 13.6 1.8 2 0 0 2 2 2 1 Rhomboid family TctB PF07331.11 CQR54963.1 - 2.1 8.6 14.1 1.3 9.3 9.5 2.3 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF2304 PF10066.9 CQR54963.1 - 8.7 6.6 9.3 1.3 9.2 1.3 2.7 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2304) LysR_substrate PF03466.20 CQR54964.1 - 1.7e-49 168.0 0.1 2.9e-49 167.3 0.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR54964.1 - 1.4e-22 79.4 0.8 2.9e-22 78.4 0.8 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR54964.1 - 0.029 14.2 0.1 0.052 13.4 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 CQR54964.1 - 0.061 13.2 0.3 0.16 11.9 0.2 1.8 2 0 0 2 2 2 0 MarR family MarR PF01047.22 CQR54964.1 - 0.067 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 CQR54964.1 - 0.091 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 CQR54964.1 - 0.15 11.9 0.1 0.31 10.9 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.20 CQR54964.1 - 0.18 11.7 0.1 0.38 10.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Zn_peptidase_2 PF04298.12 CQR54965.1 - 1.2e-89 299.4 1.0 1.4e-89 299.2 1.0 1.0 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase MerR_1 PF13411.6 CQR54966.1 - 1.1e-18 67.1 1.5 1.9e-18 66.3 0.8 1.7 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 CQR54966.1 - 3e-11 42.9 1.1 1.5e-10 40.7 0.5 2.1 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR54966.1 - 0.0032 18.0 0.9 0.0076 16.8 0.9 1.7 1 0 0 1 1 1 1 MerR, DNA binding NYD-SP28 PF14772.6 CQR54966.1 - 0.016 15.3 0.9 0.025 14.6 0.9 1.2 1 0 0 1 1 1 0 Sperm tail Prefoldin_2 PF01920.20 CQR54966.1 - 0.016 15.2 0.3 0.022 14.7 0.3 1.3 1 0 0 1 1 1 0 Prefoldin subunit KELK PF15796.5 CQR54966.1 - 0.025 15.0 3.5 0.048 14.1 3.5 1.5 1 1 0 1 1 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF3375 PF11855.8 CQR54966.1 - 0.055 12.4 2.0 0.22 10.4 1.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3375) bZIP_2 PF07716.15 CQR54966.1 - 0.26 11.4 3.2 0.69 10.0 0.9 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Ammonium_transp PF00909.21 CQR54967.1 - 6.4e-117 390.6 42.7 8.9e-117 390.1 42.7 1.2 1 0 0 1 1 1 1 Ammonium Transporter Family DUF294 PF03445.13 CQR54968.1 - 5.4e-33 113.7 0.1 1.2e-32 112.6 0.1 1.6 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 CQR54968.1 - 4.7e-21 75.1 1.4 7e-21 74.5 1.4 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase substrate binding domain RNase_T PF00929.24 CQR54969.1 - 3.3e-31 109.1 0.0 4.3e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 CQR54969.1 - 3.8e-08 33.5 0.2 7.2e-08 32.6 0.2 1.5 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like RNase_H_2 PF13482.6 CQR54969.1 - 0.002 18.1 0.1 0.0063 16.5 0.1 1.7 1 1 0 1 1 1 1 RNase_H superfamily Prok-JAB PF14464.6 CQR54970.1 - 7.6e-14 51.5 0.0 1.1e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 CQR54970.1 - 0.00021 21.3 0.0 0.00054 19.9 0.0 1.7 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease AhpC-TSA PF00578.21 CQR54971.1 - 1.4e-23 83.1 0.4 1.9e-23 82.7 0.0 1.4 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 CQR54971.1 - 1e-20 73.9 0.0 1.6e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 CQR54971.1 - 3.3e-12 46.6 0.1 5e-12 46.0 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 CQR54971.1 - 1.8e-11 44.0 0.1 3.7e-11 42.9 0.1 1.6 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 CQR54971.1 - 1.3e-06 28.8 0.2 4.8e-06 27.0 0.1 2.0 2 1 0 2 2 2 1 Thioredoxin-like domain TraF PF13728.6 CQR54971.1 - 6.5e-05 22.9 0.0 0.0003 20.7 0.0 1.9 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 CQR54971.1 - 0.0031 17.6 0.0 0.0094 16.1 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin-like HMGL-like PF00682.19 CQR54972.1 - 3.2e-50 171.1 0.0 4.8e-50 170.6 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 CQR54972.1 - 4.8e-29 100.9 0.0 7.6e-29 100.3 0.0 1.3 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain IMS PF00817.20 CQR54973.1 - 4.9e-47 159.7 0.0 8e-47 159.0 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 CQR54973.1 - 1.7e-23 83.6 0.8 3.7e-23 82.5 0.2 1.9 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 CQR54973.1 - 1.2e-08 34.8 0.1 2.6e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 IMS family HHH motif DUF1805 PF08827.11 CQR54973.1 - 0.0012 19.2 0.0 0.0033 17.7 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Cdd1 PF11731.8 CQR54973.1 - 0.0053 17.0 0.0 0.019 15.2 0.0 1.9 1 0 0 1 1 1 1 Pathogenicity locus HHH_5 PF14520.6 CQR54973.1 - 0.018 15.6 0.0 0.06 14.0 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain Fer4_13 PF13370.6 CQR54974.1 - 4e-20 72.1 1.7 4.7e-20 71.9 1.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 CQR54974.1 - 3.3e-14 53.4 2.3 3.7e-14 53.2 2.3 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 CQR54974.1 - 0.0029 17.4 3.2 0.034 14.0 1.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 CQR54974.1 - 0.0041 17.1 0.6 0.0041 17.1 0.6 1.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.11 CQR54974.1 - 0.068 13.3 0.1 0.1 12.7 0.1 1.5 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster YkuD PF03734.14 CQR54975.1 - 1.2e-17 64.7 0.0 2.3e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain TPR_2 PF07719.17 CQR54975.1 - 0.0047 16.9 2.1 0.0047 16.9 2.1 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_17 PF13431.6 CQR54975.1 - 0.019 15.3 0.1 0.019 15.3 0.1 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 CQR54975.1 - 0.11 12.4 3.7 0.34 10.8 3.7 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF1180 PF06679.12 CQR54975.1 - 2 8.8 6.8 1.3 9.4 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) TMEM154 PF15102.6 CQR54976.1 - 0.0088 15.9 0.3 0.0088 15.9 0.3 1.0 1 0 0 1 1 1 1 TMEM154 protein family DUF5383 PF17355.2 CQR54976.1 - 0.045 14.1 0.4 0.047 14.1 0.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5383) UPF0258 PF06789.12 CQR54976.1 - 0.052 13.7 0.3 0.061 13.5 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0258) LRRC37AB_C PF14914.6 CQR54976.1 - 0.053 13.4 0.3 0.057 13.3 0.3 1.0 1 0 0 1 1 1 0 LRRC37A/B like protein 1 C-terminal domain Orf78 PF06024.12 CQR54976.1 - 0.055 13.8 0.1 0.057 13.7 0.1 1.1 1 0 0 1 1 1 0 Orf78 (ac78) DUF4448 PF14610.6 CQR54976.1 - 0.082 12.7 0.1 0.082 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4448) DUF2207 PF09972.9 CQR54976.1 - 0.16 10.7 0.2 0.14 10.8 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1514 PF07438.11 CQR54976.1 - 2.1 8.3 7.1 2.8 7.9 7.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1514) DHO_dh PF01180.21 CQR54977.1 - 7.9e-94 314.2 0.0 9.3e-94 313.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 CQR54977.1 - 0.0036 16.4 0.1 0.073 12.1 0.0 2.3 3 0 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.15 CQR54977.1 - 0.0049 16.3 0.1 0.0092 15.4 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase DUF4147 PF13660.6 CQR54977.1 - 0.034 13.7 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) RelA_SpoT PF04607.17 CQR54978.1 - 2.5e-35 121.3 1.8 5.9e-35 120.1 1.8 1.6 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins Cytochrom_B562 PF07361.11 CQR54978.1 - 0.0024 18.5 2.6 2.7 8.7 0.1 3.1 3 0 0 3 3 3 2 Cytochrome b562 Histone PF00125.24 CQR54978.1 - 0.018 15.4 0.1 0.037 14.4 0.1 1.5 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 SpoU_sub_bind PF08032.12 CQR54978.1 - 0.019 15.2 0.4 0.17 12.2 0.0 2.4 2 1 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding DUF4301 PF14134.6 CQR54978.1 - 0.043 12.6 0.2 0.064 12.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4301) Fib_alpha PF08702.10 CQR54978.1 - 0.071 13.3 4.9 0.63 10.2 1.9 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF600 PF04634.12 CQR54978.1 - 0.26 11.4 6.1 1.5 8.9 2.4 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF600 DUF309 PF03745.14 CQR54979.1 - 1.8e-19 69.2 0.1 2.8e-19 68.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) POTRA_TamA_1 PF17243.2 CQR54979.1 - 0.16 12.0 0.4 0.29 11.3 0.4 1.5 1 1 0 1 1 1 0 POTRA domain TamA domain 1 Methyltr_RsmB-F PF01189.17 CQR54980.1 - 1.3e-47 162.0 0.0 1.7e-47 161.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 CQR54980.1 - 2.1e-33 114.7 0.0 4.4e-33 113.6 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltranf_PUA PF13636.6 CQR54980.1 - 2.9e-21 75.2 0.2 6.1e-21 74.2 0.2 1.6 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF RsmF_methylt_CI PF17126.5 CQR54980.1 - 1.2e-16 60.5 0.0 2.5e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 RsmF rRNA methyltransferase first C-terminal domain FtsJ PF01728.19 CQR54980.1 - 1e-05 25.8 0.0 1.9e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.16 CQR54980.1 - 0.036 13.8 0.0 0.053 13.3 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.10 CQR54980.1 - 0.042 13.4 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 CQR54980.1 - 0.18 11.5 0.0 0.38 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PseudoU_synth_2 PF00849.22 CQR54981.1 - 1.1e-18 67.9 0.1 4.6e-18 65.8 0.0 2.0 2 1 0 2 2 2 1 RNA pseudouridylate synthase S4 PF01479.25 CQR54981.1 - 7.4e-12 44.8 0.1 1.6e-11 43.7 0.1 1.6 1 0 0 1 1 1 1 S4 domain Hydrolase_3 PF08282.12 CQR54982.1 - 1.9e-61 208.1 0.0 2.1e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR54982.1 - 7.4e-14 51.9 0.0 3.9e-08 33.1 0.0 2.2 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 CQR54982.1 - 4.4e-06 27.1 0.1 0.31 11.3 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR54982.1 - 0.00039 20.9 1.9 2 8.8 0.1 3.3 2 2 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 CQR54982.1 - 0.024 14.7 0.0 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Methyltr_RsmB-F PF01189.17 CQR54983.1 - 2.3e-46 158.0 0.0 1.9e-45 155.0 0.0 2.1 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 CQR54983.1 - 5.4e-31 106.9 0.0 1.4e-30 105.6 0.0 1.8 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF RsmF_methylt_CI PF17126.5 CQR54983.1 - 5.6e-20 71.2 0.3 1.3e-19 69.9 0.3 1.7 1 0 0 1 1 1 1 RsmF rRNA methyltransferase first C-terminal domain Methyltranf_PUA PF13636.6 CQR54983.1 - 1.3e-18 66.7 0.0 2.2e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF PCMT PF01135.19 CQR54983.1 - 0.017 14.9 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 CQR54983.1 - 0.021 14.6 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_31 PF13847.6 CQR54983.1 - 0.03 14.1 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 CQR54983.1 - 0.18 11.9 0.0 0.37 10.9 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Glycos_transf_1 PF00534.20 CQR54984.1 - 4e-37 127.4 0.0 5.8e-37 126.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR54984.1 - 2.1e-25 89.7 0.0 3.3e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR54984.1 - 6.6e-18 65.3 0.0 5.7e-17 62.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR54984.1 - 8.3e-12 45.8 0.0 1.5e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 CQR54984.1 - 3e-05 24.3 0.0 7.6e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Metallophos PF00149.28 CQR54985.1 - 2e-12 48.0 0.2 6.6e-12 46.4 0.2 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR54985.1 - 1.4e-09 38.3 0.2 3.3e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain AAA_27 PF13514.6 CQR54986.1 - 2.8e-24 85.9 2.5 2.8e-24 85.9 2.5 3.8 3 1 0 3 3 3 1 AAA domain AAA_23 PF13476.6 CQR54986.1 - 3.7e-10 40.6 3.0 3.7e-10 40.6 3.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 CQR54986.1 - 1.9e-06 27.8 0.0 3.4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 CQR54986.1 - 1.1e-05 24.9 0.0 0.00052 19.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR54986.1 - 0.0019 17.9 0.0 0.0043 16.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_I PF03899.15 CQR54986.1 - 0.15 12.4 0.1 0.35 11.3 0.1 1.6 1 0 0 1 1 1 0 ATP synthase I chain GAS PF13851.6 CQR54986.1 - 0.23 10.8 0.0 0.23 10.8 0.0 5.7 5 1 0 6 6 6 0 Growth-arrest specific micro-tubule binding JIP_LZII PF16471.5 CQR54986.1 - 4.8 7.4 10.5 2.2 8.5 0.1 5.0 4 0 0 4 4 4 0 JNK-interacting protein leucine zipper II Pribosyltran PF00156.27 CQR54988.1 - 1.4e-07 31.2 0.2 2.1e-07 30.6 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain OmpA_membrane PF01389.17 CQR54988.1 - 0.12 12.1 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 OmpA-like transmembrane domain DUF1481 PF07356.12 CQR54990.1 - 0.15 11.8 0.0 0.16 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1481) UvrA_DNA-bind PF17755.1 CQR54991.1 - 0.072 13.5 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 UvrA DNA-binding domain Methyltransf_11 PF08241.12 CQR54992.1 - 0.00047 20.8 0.0 0.0023 18.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR54992.1 - 0.002 18.8 0.0 0.005 17.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain His_kinase PF06580.13 CQR54994.1 - 3.2e-17 62.6 0.9 1.1e-16 60.9 0.9 2.0 1 0 0 1 1 1 1 Histidine kinase HAMP PF00672.25 CQR54994.1 - 0.0062 16.9 0.0 0.015 15.6 0.0 1.7 1 0 0 1 1 1 1 HAMP domain DUF1689 PF07954.11 CQR54994.1 - 0.067 13.6 1.6 0.11 12.9 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1689) Wzy_C PF04932.15 CQR54994.1 - 0.26 10.9 2.5 7.9 6.1 0.2 2.2 2 0 0 2 2 2 0 O-Antigen ligase Response_reg PF00072.24 CQR54995.1 - 3.4e-24 85.2 0.1 8.8e-24 83.8 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR54995.1 - 4.7e-20 71.6 0.0 1e-19 70.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR54995.1 - 4.2e-16 58.6 0.3 1.6e-08 34.4 0.1 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family BPD_transp_1 PF00528.22 CQR54996.1 - 3.1e-10 40.1 12.1 3.1e-10 40.1 12.1 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR54997.1 - 8.2e-09 35.5 27.2 6.1e-08 32.6 27.2 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR54998.1 - 1.7e-18 67.7 15.6 3.3e-18 66.7 15.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Glyco_hydro_32N PF00251.20 CQR54999.1 - 4.2e-20 72.5 7.0 7.9e-20 71.6 7.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain DUF4975 PF16346.5 CQR54999.1 - 2.5e-07 30.9 0.0 4.4e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4975) MFS_1 PF07690.16 CQR55000.1 - 1.1e-49 169.2 38.2 1.1e-49 169.2 38.2 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR55000.1 - 5.3e-12 45.3 9.9 5.3e-12 45.3 9.9 3.5 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR55000.1 - 2.6e-10 39.8 30.2 2.5e-05 23.3 11.1 3.0 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 CQR55000.1 - 1.1e-08 33.9 18.8 1.5e-08 33.5 18.8 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR55000.1 - 9.3e-05 21.2 11.1 9.3e-05 21.2 11.1 2.9 2 1 1 3 3 3 2 MFS/sugar transport protein UNC-93 PF05978.16 CQR55000.1 - 0.0013 18.5 4.4 0.0013 18.5 4.4 3.4 3 1 1 4 4 4 1 Ion channel regulatory protein UNC-93 Tom22 PF04281.13 CQR55000.1 - 0.19 11.5 0.1 0.32 10.8 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 OATP PF03137.20 CQR55000.1 - 4 5.6 29.6 1.1 7.5 4.6 4.6 1 1 3 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_1 PF00583.25 CQR55001.1 - 1.7e-15 57.2 0.1 4.2e-13 49.5 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR55001.1 - 7.6e-12 45.3 0.0 3.4e-11 43.2 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR55001.1 - 2.9e-10 40.4 0.1 6.5e-10 39.3 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55001.1 - 2.9e-06 27.1 0.0 6.1e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR55001.1 - 3.1e-05 24.0 0.0 6.9e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 CQR55001.1 - 6.2e-05 23.7 0.0 0.00033 21.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55001.1 - 0.0085 16.2 0.1 0.13 12.4 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR55001.1 - 0.031 14.4 0.0 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 CQR55001.1 - 0.087 12.5 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 MOZ/SAS family Acetyltransf_8 PF13523.6 CQR55001.1 - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Mac PF12464.8 CQR55001.1 - 0.18 12.1 1.0 18 5.6 0.0 2.8 3 0 0 3 3 3 0 Maltose acetyltransferase Response_reg PF00072.24 CQR55002.1 - 1.2e-26 93.1 0.1 3.8e-26 91.4 0.1 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR55002.1 - 4.3e-22 78.2 0.0 3.6e-21 75.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55002.1 - 7.9e-18 64.1 0.0 8e-11 41.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR55002.1 - 6.4e-09 36.1 0.5 5.8e-08 33.0 0.0 2.5 2 0 0 2 2 2 1 GGDEF-like domain His_kinase PF06580.13 CQR55003.1 - 5.8e-25 87.4 0.8 1.7e-24 85.9 0.8 1.9 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR55003.1 - 3.2e-20 73.0 4.7 8.1e-20 71.7 1.0 2.2 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR55003.1 - 1.4e-10 41.7 0.0 4.1e-10 40.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55003.1 - 0.0016 18.4 0.0 0.0036 17.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR55003.1 - 0.045 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Glyoxalase_2 PF12681.7 CQR55004.1 - 6.6e-07 29.3 0.6 8.8e-07 28.9 0.6 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 CQR55004.1 - 1.4e-06 29.0 0.0 1.6e-06 28.9 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 CQR55004.1 - 0.0018 18.5 0.0 0.0036 17.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BPD_transp_1 PF00528.22 CQR55005.1 - 7.6e-12 45.3 16.1 7.6e-12 45.3 16.1 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3566 PF12089.8 CQR55005.1 - 0.052 13.9 0.4 0.052 13.9 0.4 3.0 2 1 1 3 3 3 0 Transmembrane domain of unknown function (DUF3566) BPD_transp_1 PF00528.22 CQR55006.1 - 5.5e-18 65.4 7.1 5.5e-18 65.4 7.1 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MARVEL PF01284.23 CQR55006.1 - 9.9 6.2 19.1 0.14 12.2 7.6 3.0 4 0 0 4 4 4 0 Membrane-associating domain SBP_bac_8 PF13416.6 CQR55007.1 - 2.4e-23 83.4 5.4 4.5e-23 82.5 5.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR55007.1 - 2.2e-20 73.9 14.0 4.3e-20 72.9 14.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein FAD_oxidored PF12831.7 CQR55008.1 - 5.9e-21 75.3 0.2 6.7e-21 75.1 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR55008.1 - 4.4e-09 35.9 2.5 5.4e-09 35.6 2.5 1.1 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 CQR55008.1 - 4.7e-09 35.8 2.0 5.7e-09 35.5 2.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 CQR55008.1 - 1.6e-08 34.6 2.4 2.4e-08 34.1 1.9 1.5 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 CQR55008.1 - 1.7e-07 31.1 0.2 1.7e-07 31.1 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR55008.1 - 4e-07 29.6 0.1 4e-07 29.6 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR55008.1 - 1.4e-06 27.3 1.6 1.8e-06 26.9 1.6 1.1 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 CQR55008.1 - 4.6e-06 26.1 0.1 4.6e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 CQR55008.1 - 5.4e-05 22.6 1.3 6.7e-05 22.3 1.3 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 CQR55008.1 - 8.4e-05 21.8 0.2 8.4e-05 21.8 0.2 1.1 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 CQR55008.1 - 0.0011 19.5 1.2 0.0014 19.1 0.7 1.4 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 CQR55008.1 - 0.0021 17.0 0.3 0.0023 16.8 0.3 1.1 1 0 0 1 1 1 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 CQR55008.1 - 0.0055 16.0 0.1 0.0069 15.7 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 CQR55008.1 - 0.0078 15.5 1.1 0.01 15.1 1.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR55009.1 - 7.4e-66 223.3 0.0 9.4e-66 222.9 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Virul_fac_BrkB PF03631.15 CQR55010.1 - 1.5e-68 231.2 20.8 1.7e-68 231.0 20.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF4006 PF13179.6 CQR55010.1 - 1.1 9.2 5.0 0.83 9.6 2.4 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF4006) HIT PF01230.23 CQR55011.1 - 2.4e-11 44.2 0.1 2.9e-11 43.9 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 CQR55011.1 - 1.1e-09 38.8 0.2 1.4e-09 38.5 0.2 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.17 CQR55011.1 - 0.032 14.0 0.1 0.039 13.7 0.1 1.2 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain CwfJ_C_1 PF04677.15 CQR55011.1 - 0.11 12.4 0.2 0.13 12.1 0.2 1.1 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 DDE_Tnp_1 PF01609.21 CQR55012.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR55012.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR55012.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR55012.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain adh_short PF00106.25 CQR55013.1 - 7.8e-22 77.7 0.0 1.6e-15 57.1 0.0 2.1 2 0 0 2 2 2 2 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55013.1 - 8.3e-13 48.4 0.0 1.2e-11 44.6 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55013.1 - 2.8e-09 37.1 0.0 4.6e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR55013.1 - 4.1e-07 29.7 0.0 6.1e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR55013.1 - 0.0018 17.7 0.0 0.0049 16.3 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 CQR55013.1 - 0.002 18.0 0.0 0.0025 17.7 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 CQR55013.1 - 0.0023 17.1 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Ribosomal_S11 PF00411.19 CQR55013.1 - 0.024 15.0 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S11 NmrA PF05368.13 CQR55013.1 - 0.19 11.3 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family MerR_1 PF13411.6 CQR55014.1 - 3.1e-19 68.8 1.3 3.6e-19 68.6 0.1 1.6 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 CQR55014.1 - 1.4e-14 53.6 0.5 2.4e-14 52.8 0.5 1.4 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR55014.1 - 9.1e-08 32.5 0.0 1.4e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 MerR, DNA binding Sigma70_r4_2 PF08281.12 CQR55014.1 - 0.00089 18.9 0.8 0.0017 18.0 0.1 1.9 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_17 PF12728.7 CQR55014.1 - 0.002 18.3 0.0 0.0039 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 CQR55014.1 - 0.021 14.9 1.1 0.13 12.3 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase DUF892 PF05974.12 CQR55014.1 - 0.023 14.7 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF892) HTH_23 PF13384.6 CQR55014.1 - 0.028 14.2 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.22 CQR55014.1 - 0.039 14.0 0.1 0.094 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_28 PF13518.6 CQR55014.1 - 0.087 13.0 0.0 0.2 11.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 CQR55014.1 - 0.11 12.5 0.1 0.33 11.0 0.0 1.9 2 1 0 2 2 2 0 Winged helix-turn helix Fe-ADH PF00465.19 CQR55015.1 - 2.7e-61 207.4 4.8 3.1e-61 207.2 4.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 CQR55015.1 - 8.1e-37 127.3 0.3 1e-36 126.9 0.3 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 CQR55015.1 - 0.0012 18.1 3.1 0.071 12.3 0.2 2.7 2 1 0 2 2 2 2 3-dehydroquinate synthase Polysacc_deac_2 PF04748.13 CQR55016.1 - 2.8e-66 222.8 0.0 3.3e-66 222.5 0.0 1.1 1 0 0 1 1 1 1 Divergent polysaccharide deacetylase Amidase_3 PF01520.18 CQR55017.1 - 1e-36 126.7 0.0 1.3e-36 126.3 0.0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase DUF2782 PF11191.8 CQR55017.1 - 0.2 11.9 0.0 0.41 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2782) YqzE PF14038.6 CQR55018.1 - 2.7e-16 59.3 0.0 4.9e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 YqzE-like protein YqhG PF11079.8 CQR55020.1 - 2.9e-47 160.8 0.0 7.1e-31 107.1 0.0 2.0 2 0 0 2 2 2 2 Bacterial protein YqhG of unknown function Selenoprotein_S PF06936.11 CQR55020.1 - 0.33 10.7 2.3 0.58 9.9 2.3 1.3 1 0 0 1 1 1 0 Selenoprotein S (SelS) SNF2_N PF00176.23 CQR55021.1 - 6.2e-34 117.2 0.1 1.8e-33 115.7 0.1 1.8 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 CQR55021.1 - 1.7e-22 79.9 0.0 5.6e-22 78.2 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR55021.1 - 5.5e-11 42.8 0.0 2e-10 40.9 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 CQR55021.1 - 1.1e-05 25.3 0.0 2.7e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 CQR55021.1 - 0.044 13.7 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain DUF2075 PF09848.9 CQR55021.1 - 0.046 13.0 0.0 0.073 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Helicase_C_4 PF13871.6 CQR55021.1 - 0.075 12.7 0.1 0.3 10.7 0.0 2.0 1 1 1 2 2 2 0 C-terminal domain on Strawberry notch homologue Ribonuc_red_lgC PF02867.15 CQR55023.1 - 2.2e-133 445.6 0.0 6.8e-133 444.0 0.0 1.7 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 CQR55023.1 - 0.0012 18.8 0.0 0.1 12.6 0.0 3.5 3 1 0 3 3 3 1 Ribonucleotide reductase, all-alpha domain TetR_C_28 PF17937.1 CQR55023.1 - 0.12 12.8 0.1 14 6.2 0.0 2.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Myosin_N PF02736.19 CQR55023.1 - 0.21 11.5 1.7 0.62 9.9 1.7 1.8 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain TetR_C_8 PF14278.6 CQR55026.1 - 4e-08 33.3 2.3 2.7e-07 30.6 0.4 2.5 2 1 0 2 2 2 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR55026.1 - 1.6e-05 24.6 0.0 5e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family PAE PF03283.13 CQR55027.1 - 6.7e-15 55.1 0.1 8.2e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Pectinacetylesterase Sigma_reg_N PF13800.6 CQR55027.1 - 0.027 14.8 1.7 0.11 12.8 0.5 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal FTHFS PF01268.19 CQR55027.1 - 0.044 12.0 0.0 0.062 11.5 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Lipase_3 PF01764.25 CQR55027.1 - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) SKG6 PF08693.10 CQR55027.1 - 8.8 5.8 6.1 20 4.7 6.1 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Chlorophyllase2 PF12740.7 CQR55028.1 - 1.2e-10 40.8 0.1 1.2e-09 37.4 0.2 2.2 2 1 0 2 2 2 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 CQR55028.1 - 4e-07 29.3 0.2 7.2e-05 21.9 0.3 2.6 2 1 0 2 2 2 2 Chlorophyllase PAF-AH_p_II PF03403.13 CQR55028.1 - 0.0005 18.7 0.2 0.075 11.5 0.0 2.2 1 1 1 2 2 2 2 Platelet-activating factor acetylhydrolase, isoform II Hydrolase_4 PF12146.8 CQR55028.1 - 0.0052 16.1 0.4 0.064 12.5 0.4 2.2 1 1 0 1 1 1 1 Serine aminopeptidase, S33 FSH1 PF03959.13 CQR55028.1 - 0.0085 15.8 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.21 CQR55028.1 - 0.0092 15.5 0.3 0.023 14.2 0.3 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 CQR55029.1 - 2.2e-09 37.5 0.5 4e-09 36.6 0.5 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR55029.1 - 2.6e-09 36.9 2.1 2.4e-05 23.9 0.0 2.9 2 1 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 CQR55029.1 - 4.8e-08 32.8 0.4 0.00015 21.4 0.1 2.8 2 1 0 2 2 2 2 Dienelactone hydrolase family Chlorophyllase2 PF12740.7 CQR55029.1 - 0.0024 16.8 0.0 0.0039 16.1 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_1 PF00561.20 CQR55029.1 - 0.003 17.2 0.2 4.1 7.0 0.1 2.9 1 1 2 3 3 3 2 alpha/beta hydrolase fold COesterase PF00135.28 CQR55029.1 - 0.014 14.2 0.0 0.1 11.4 0.0 1.9 2 0 0 2 2 2 0 Carboxylesterase family Hydrolase_4 PF12146.8 CQR55029.1 - 0.028 13.7 0.1 3.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Serine aminopeptidase, S33 GHMP_kinases_C PF08544.13 CQR55029.1 - 0.19 12.1 0.0 0.56 10.6 0.0 1.8 1 0 0 1 1 1 0 GHMP kinases C terminal TetR_C_8 PF14278.6 CQR55031.1 - 4.2e-09 36.4 3.1 1.5e-08 34.7 0.8 2.7 1 1 1 2 2 2 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR55031.1 - 1.3e-06 28.1 0.0 2.2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR55031.1 - 0.029 14.5 1.0 0.043 14.0 1.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Hexapep PF00132.24 CQR55032.1 - 6e-17 60.6 17.8 8.3e-12 44.3 6.2 3.8 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 CQR55032.1 - 1.4e-15 56.7 20.0 1.2e-10 41.0 5.3 3.2 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Mac PF12464.8 CQR55032.1 - 2.3e-12 46.9 0.0 3.7e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase MFS_1 PF07690.16 CQR55033.1 - 5.5e-34 117.6 46.7 1.3e-30 106.6 33.7 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_18 PF12833.7 CQR55034.1 - 3.3e-17 62.5 0.1 6e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55034.1 - 9.8e-13 47.9 0.0 9.4e-10 38.3 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55034.1 - 7.8e-12 45.3 1.7 1.3e-11 44.6 0.8 1.8 2 1 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR55034.1 - 1.9e-09 37.1 0.7 3.5e-09 36.2 0.7 1.4 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 CQR55034.1 - 0.0016 18.3 0.1 0.0031 17.4 0.1 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase His_kinase PF06580.13 CQR55035.1 - 1.8e-20 73.1 0.1 8.5e-20 70.9 0.1 2.3 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR55035.1 - 3.6e-13 50.0 0.0 8.1e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR55035.1 - 0.0006 19.7 0.2 0.0015 18.4 0.2 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 CQR55035.1 - 0.0094 15.8 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55035.1 - 0.028 14.4 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Vpu PF00558.19 CQR55035.1 - 1.2 8.9 4.2 0.88 9.4 1.5 2.2 2 0 0 2 2 2 0 Vpu protein TssO PF17561.2 CQR55035.1 - 1.5 8.9 11.7 0.71 10.0 2.9 3.1 3 0 0 3 3 3 0 Type VI secretion system, TssO Response_reg PF00072.24 CQR55036.1 - 2.7e-27 95.2 0.2 6.1e-27 94.0 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR55036.1 - 4.7e-22 78.1 0.1 9e-22 77.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55036.1 - 2.7e-12 46.4 2.2 2.3e-05 24.4 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family PARP_reg PF02877.14 CQR55036.1 - 0.017 15.3 0.1 0.058 13.5 0.0 1.8 2 0 0 2 2 2 0 Poly(ADP-ribose) polymerase, regulatory domain FleQ PF06490.11 CQR55036.1 - 0.054 13.9 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ Dcc1 PF09724.9 CQR55036.1 - 0.11 11.7 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Sister chromatid cohesion protein Dcc1 SBP_bac_1 PF01547.25 CQR55037.1 - 3.3e-18 66.7 4.7 6.8e-18 65.7 4.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR55037.1 - 1.7e-15 57.6 1.1 2.3e-15 57.1 1.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR55038.1 - 5.1e-16 59.0 18.8 5.1e-16 59.0 18.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR55039.1 - 1.9e-06 27.7 31.3 1.5e-05 24.8 31.3 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ISK_Channel PF02060.15 CQR55039.1 - 0.11 12.2 0.2 0.24 11.1 0.2 1.6 1 0 0 1 1 1 0 Slow voltage-gated potassium channel DUF1772 PF08592.11 CQR55039.1 - 3.9 7.8 15.5 2.7 8.3 8.8 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) SBP_bac_8 PF13416.6 CQR55040.1 - 4.8e-18 66.0 6.1 9.7e-18 65.0 6.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Big_3 PF07523.12 CQR55040.1 - 0.035 14.4 0.3 0.2 12.0 0.1 2.4 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Melibiase_2 PF16499.5 CQR55041.1 - 5.7e-24 84.8 0.7 6.7e-15 55.0 0.0 3.1 1 1 1 2 2 2 2 Alpha galactosidase A Melibiase_C PF17801.1 CQR55041.1 - 5.2e-10 39.3 0.0 9.6e-10 38.4 0.0 1.5 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain HTH_18 PF12833.7 CQR55042.1 - 3.7e-21 75.2 0.1 6.4e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55042.1 - 6.5e-19 67.5 1.6 7e-09 35.6 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55042.1 - 1.9e-09 37.6 0.0 3.3e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 CQR55042.1 - 0.016 14.9 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_2 PF07883.11 CQR55042.1 - 0.14 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Cupin domain adh_short PF00106.25 CQR55044.1 - 1.2e-50 171.7 0.0 1.8e-50 171.1 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55044.1 - 6.4e-40 137.2 0.0 8.4e-40 136.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55044.1 - 3.5e-11 43.3 0.0 5.8e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 CQR55044.1 - 8.3e-07 29.1 0.0 1.3e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 CQR55044.1 - 0.00064 19.3 0.6 0.002 17.6 0.6 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DFP PF04127.15 CQR55044.1 - 0.027 14.3 0.0 0.073 12.9 0.0 1.6 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein NAD_binding_2 PF03446.15 CQR55044.1 - 0.063 13.4 0.1 0.44 10.7 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GBP_PSP PF02425.15 CQR55044.1 - 0.071 12.8 0.5 0.16 11.6 0.5 1.6 1 0 0 1 1 1 0 Paralytic/GBP/PSP peptide DUF1776 PF08643.10 CQR55044.1 - 0.078 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) MerR_1 PF13411.6 CQR55045.1 - 5.4e-21 74.5 0.2 8.2e-21 73.9 0.2 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR55045.1 - 3.6e-12 45.8 1.0 6.7e-12 45.0 0.9 1.5 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR55045.1 - 5.9e-05 23.5 0.1 0.00014 22.3 0.1 1.7 1 1 0 1 1 1 1 MerR, DNA binding HTH_17 PF12728.7 CQR55045.1 - 0.0044 17.2 0.1 0.01 16.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain SinI PF08671.10 CQR55045.1 - 0.015 15.1 0.2 0.03 14.1 0.2 1.6 1 0 0 1 1 1 0 Anti-repressor SinI MHC_II_beta PF00969.19 CQR55045.1 - 0.051 13.7 0.0 0.076 13.1 0.0 1.2 1 0 0 1 1 1 0 Class II histocompatibility antigen, beta domain MFS_1 PF07690.16 CQR55046.1 - 8.2e-49 166.4 82.1 2.1e-45 155.2 53.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR55046.1 - 1.3e-12 47.3 11.5 1.3e-12 47.3 11.5 3.1 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_4 PF06779.14 CQR55046.1 - 1.7e-05 24.3 31.3 2.5e-05 23.8 31.3 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Presenilin PF01080.17 CQR55046.1 - 0.053 12.3 7.7 0.12 11.2 7.7 1.5 1 0 0 1 1 1 0 Presenilin FCD PF07729.12 CQR55047.1 - 1.7e-24 86.6 3.0 2.5e-24 86.1 3.0 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR55047.1 - 7.1e-17 60.8 0.2 3e-16 58.8 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 CQR55047.1 - 0.0054 16.8 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HU-CCDC81_euk_2 PF18289.1 CQR55047.1 - 0.011 15.8 0.2 0.54 10.5 0.0 2.7 3 0 0 3 3 3 0 CCDC81 eukaryotic HU domain 2 TrmB PF01978.19 CQR55047.1 - 0.05 13.5 0.0 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Xan_ur_permease PF00860.20 CQR55048.1 - 2.7e-71 240.3 44.5 4.1e-71 239.7 44.5 1.3 1 0 0 1 1 1 1 Permease family Isochorismatase PF00857.20 CQR55049.1 - 1.3e-42 145.9 0.0 1.5e-42 145.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Ada_Zn_binding PF02805.16 CQR55049.1 - 0.12 12.4 0.0 20 5.3 0.0 2.2 2 0 0 2 2 2 0 Metal binding domain of Ada Ku PF02735.16 CQR55051.1 - 4.2e-05 23.3 0.0 0.063 13.0 0.0 2.1 1 1 1 2 2 2 2 Ku70/Ku80 beta-barrel domain Thioredoxin_4 PF13462.6 CQR55053.1 - 0.011 15.9 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 CQR55053.1 - 0.012 15.4 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 DSBA-like thioredoxin domain CMD PF02627.20 CQR55054.1 - 9.7e-23 80.0 0.0 1.1e-22 79.9 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HisG_C PF08029.11 CQR55054.1 - 0.061 13.5 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 HisG, C-terminal domain Herpes_BLRF2 PF05812.12 CQR55054.1 - 0.12 12.5 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein His_Phos_1 PF00300.22 CQR55057.1 - 4.9e-59 199.3 0.0 5.5e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ROK PF00480.20 CQR55058.1 - 2.8e-14 53.3 3.4 8.3e-12 45.2 0.6 2.4 2 1 1 3 3 3 2 ROK family HTH_24 PF13412.6 CQR55058.1 - 0.00096 18.7 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_42 PF06224.12 CQR55058.1 - 0.0068 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MFS_1 PF07690.16 CQR55059.1 - 3.8e-36 124.8 36.3 3.8e-36 124.8 36.3 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 CQR55059.1 - 0.00065 18.2 9.6 0.0025 16.3 0.1 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector Hexapep PF00132.24 CQR55060.1 - 2.3e-13 49.3 17.0 4.8e-10 38.8 10.7 3.7 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Mac PF12464.8 CQR55060.1 - 6.4e-13 48.7 0.1 9.4e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep_2 PF14602.6 CQR55060.1 - 9.1e-10 38.1 17.8 2.4e-09 36.8 7.7 3.0 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase ACT_6 PF13740.6 CQR55060.1 - 0.087 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 ACT domain Asp_Glu_race PF01177.22 CQR55061.1 - 1.3e-23 84.0 0.0 1.7e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 CQR55061.1 - 0.024 14.1 0.0 4.4 6.6 0.0 2.1 2 0 0 2 2 2 0 AroM protein ABC_membrane PF00664.23 CQR55062.1 - 4.1e-56 190.6 15.6 5.4e-56 190.2 15.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR55062.1 - 4.4e-31 108.2 0.0 1.2e-30 106.8 0.0 1.8 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55062.1 - 3.1e-06 26.8 0.9 0.00031 20.2 0.3 2.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR55062.1 - 0.00023 21.1 0.0 0.00052 20.0 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 CQR55062.1 - 0.002 18.4 0.5 0.023 15.0 0.5 2.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 CQR55062.1 - 0.0028 17.7 0.3 0.0088 16.1 0.3 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_33 PF13671.6 CQR55062.1 - 0.0047 17.1 0.0 0.014 15.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 CQR55062.1 - 0.0091 15.1 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 CQR55062.1 - 0.0094 15.7 0.2 0.023 14.5 0.2 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_10 PF12846.7 CQR55062.1 - 0.01 14.8 0.5 0.032 13.2 0.1 2.1 2 1 0 2 2 2 0 AAA-like domain AAA_23 PF13476.6 CQR55062.1 - 0.01 16.4 0.8 0.016 15.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF87 PF01935.17 CQR55062.1 - 0.014 15.5 0.4 0.045 13.8 0.2 1.9 2 0 0 2 2 1 0 Helicase HerA, central domain cobW PF02492.19 CQR55062.1 - 0.043 13.4 0.7 0.093 12.3 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 CQR55062.1 - 0.047 13.7 0.1 2 8.5 0.0 2.8 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR55062.1 - 0.05 13.3 0.4 0.76 9.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 CQR55062.1 - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 CQR55062.1 - 0.053 13.2 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR55062.1 - 0.058 13.6 0.1 0.15 12.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain TsaE PF02367.17 CQR55062.1 - 0.06 13.4 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 CQR55062.1 - 0.066 13.6 0.9 0.19 12.1 0.1 2.3 2 1 0 2 2 1 0 AAA ATPase domain RNA_helicase PF00910.22 CQR55062.1 - 0.067 13.6 0.1 0.76 10.2 0.0 2.7 3 0 0 3 3 2 0 RNA helicase Dynamin_N PF00350.23 CQR55062.1 - 0.091 12.8 0.1 0.53 10.3 0.0 2.3 3 0 0 3 3 2 0 Dynamin family AAA_18 PF13238.6 CQR55062.1 - 0.096 13.2 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 CQR55062.1 - 0.11 12.7 0.2 0.49 10.6 0.0 2.2 2 0 0 2 2 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 CQR55062.1 - 0.19 11.4 3.4 0.39 10.4 0.5 2.7 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 CQR55062.1 - 0.33 11.4 1.9 5.7 7.4 1.9 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SLATT_1 PF18181.1 CQR55062.1 - 0.73 9.8 4.9 0.45 10.4 0.3 2.7 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 SUR7 PF06687.12 CQR55062.1 - 3.4 7.2 10.6 0.76 9.4 3.1 2.6 1 1 1 2 2 2 0 SUR7/PalI family DUF2207 PF09972.9 CQR55062.1 - 9.2 4.9 11.3 3.3 6.4 1.6 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 CQR55063.1 - 7.5e-32 110.7 0.0 1.3e-31 110.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 CQR55063.1 - 2.3e-26 93.1 16.0 2.3e-26 93.1 16.0 1.6 1 1 1 2 2 2 1 ABC transporter transmembrane region SMC_N PF02463.19 CQR55063.1 - 6.8e-05 22.4 0.7 0.0019 17.7 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR55063.1 - 0.0025 17.7 0.0 0.0062 16.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR55063.1 - 0.013 15.9 0.0 0.029 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CQR55063.1 - 0.12 12.1 0.1 0.37 10.6 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 CQR55063.1 - 0.13 11.9 0.2 1.3 8.6 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain HATPase_c PF02518.26 CQR55064.1 - 5.4e-24 84.8 0.0 8.8e-24 84.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55064.1 - 1.1e-14 54.2 0.0 2.2e-14 53.2 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55064.1 - 5.3e-10 39.5 0.0 1.1e-09 38.5 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR55064.1 - 0.00016 21.5 0.0 0.00033 20.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 CQR55064.1 - 0.0069 16.3 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF975 PF06161.11 CQR55064.1 - 0.39 10.5 7.9 0.72 9.6 7.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF975) DHHC PF01529.20 CQR55064.1 - 1.9 8.6 4.9 3.3 7.8 4.9 1.3 1 0 0 1 1 1 0 DHHC palmitoyltransferase Response_reg PF00072.24 CQR55065.1 - 3.9e-30 104.3 0.5 6.4e-30 103.6 0.5 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55065.1 - 5.3e-18 64.9 0.1 2.2e-17 62.9 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 CQR55065.1 - 0.018 15.4 0.0 0.029 14.7 0.0 1.3 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ ATPgrasp_YheCD PF14398.6 CQR55066.1 - 1.5e-62 211.2 0.0 1.9e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 YheC/D like ATP-grasp TTL PF03133.15 CQR55066.1 - 2.8e-10 39.8 0.1 3e-06 26.6 0.0 2.2 2 0 0 2 2 2 2 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.6 CQR55066.1 - 2.9e-09 36.6 0.0 0.00011 21.6 0.0 2.4 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 CQR55066.1 - 0.075 12.4 0.1 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 Prokaryotic glutathione synthetase, ATP-grasp domain PALP PF00291.25 CQR55067.1 - 6.7e-55 186.6 0.0 1.3e-54 185.6 0.0 1.5 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme AMP-binding PF00501.28 CQR55067.1 - 0.00027 19.6 0.0 0.00043 19.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 CQR55067.1 - 0.015 14.2 0.0 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 GH3 auxin-responsive promoter OCD_Mu_crystall PF02423.15 CQR55068.1 - 6.4e-25 87.8 0.0 3.8e-24 85.2 0.0 1.9 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NTP_transferase PF00483.23 CQR55069.1 - 1.4e-25 90.3 0.0 2.3e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR55069.1 - 2.4e-06 28.0 0.0 8.2e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 CQR55069.1 - 4.1e-06 26.8 0.0 9.5e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 CQR55069.1 - 0.023 14.4 0.0 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 Cupin domain ATPgrasp_YheCD PF14398.6 CQR55071.1 - 1.3e-59 201.5 0.2 1.7e-59 201.2 0.2 1.0 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR55071.1 - 3.4e-12 46.2 0.0 1.1e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp TTL PF03133.15 CQR55071.1 - 1.6e-06 27.5 0.1 0.00015 21.0 0.0 2.2 2 0 0 2 2 2 2 Tubulin-tyrosine ligase family CW_7 PF08230.11 CQR55071.1 - 0.023 14.4 1.6 0.05 13.3 1.6 1.5 1 0 0 1 1 1 0 CW_7 repeat Cas_Cas02710 PF09670.10 CQR55071.1 - 0.058 12.2 0.1 0.16 10.7 0.0 1.6 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cas02710) HisKA PF00512.25 CQR55072.1 - 8.6e-08 32.1 0.0 1.9e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55072.1 - 2.1e-05 24.8 0.0 4.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR55072.1 - 0.0026 17.6 0.0 0.007 16.2 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c PF02518.26 CQR55072.1 - 0.092 13.3 0.1 0.46 11.0 0.1 2.0 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trans_reg_C PF00486.28 CQR55073.1 - 4e-26 90.9 0.2 1.8e-25 88.8 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR55073.1 - 2.4e-25 88.9 0.1 3.9e-25 88.2 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR55073.1 - 0.0069 15.9 0.1 0.42 10.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Ribosom_S12_S23 PF00164.25 CQR55073.1 - 0.054 13.1 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S12/S23 SNARE_assoc PF09335.11 CQR55074.1 - 1.2e-20 74.2 9.4 1.2e-20 74.2 9.4 2.5 3 0 0 3 3 3 1 SNARE associated Golgi protein Arteri_Gl PF00951.18 CQR55074.1 - 0.032 14.0 0.3 0.084 12.7 0.3 1.7 1 0 0 1 1 1 0 Arterivirus GL envelope glycoprotein DUF4271 PF14093.6 CQR55074.1 - 0.042 13.8 14.7 0.012 15.6 6.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) DUF3325 PF11804.8 CQR55074.1 - 5.7 7.2 11.3 4.6 7.5 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3325) CDP-OH_P_transf PF01066.21 CQR55075.1 - 6.1e-14 52.5 0.5 6.1e-14 52.5 0.5 2.6 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase malic PF00390.19 CQR55076.1 - 1.5e-33 116.1 1.3 4.8e-25 88.4 0.2 2.6 2 1 1 3 3 3 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 CQR55076.1 - 2.8e-26 92.3 2.1 1.7e-13 50.4 0.9 2.8 1 1 1 2 2 2 2 Malic enzyme, NAD binding domain AlaDh_PNT_C PF01262.21 CQR55076.1 - 0.021 14.1 1.4 0.22 10.8 0.4 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 CQR55076.1 - 0.029 13.7 0.8 0.055 12.8 0.3 1.7 2 0 0 2 2 2 0 ThiF family DapB_N PF01113.20 CQR55076.1 - 0.085 13.0 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DEDD_Tnp_IS110 PF01548.17 CQR55078.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR55078.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR55078.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR55078.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DSX_dimer PF08828.10 CQR55079.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR55079.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain Dak1 PF02733.17 CQR55080.1 - 4.2e-127 423.3 2.9 5.7e-127 422.9 2.9 1.2 1 0 0 1 1 1 1 Dak1 domain Dak2 PF02734.17 CQR55080.1 - 3.8e-47 160.4 5.2 3.8e-47 160.4 5.2 2.0 2 0 0 2 2 2 1 DAK2 domain Fe-ADH PF00465.19 CQR55081.1 - 9.5e-59 199.0 3.1 1.3e-58 198.6 3.1 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 CQR55081.1 - 3.6e-24 85.8 0.3 5e-24 85.4 0.3 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 CQR55081.1 - 0.038 13.1 2.5 0.99 8.5 2.5 2.7 1 1 0 1 1 1 0 3-dehydroquinate synthase PocR PF10114.9 CQR55082.1 - 6.4e-47 159.3 0.1 1e-46 158.7 0.1 1.3 1 0 0 1 1 1 1 Sensory domain found in PocR HTH_AraC PF00165.23 CQR55082.1 - 1.8e-17 62.9 0.4 1.1e-08 35.0 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR55082.1 - 2e-17 63.2 0.1 5.1e-17 61.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR55082.1 - 0.1 12.6 0.0 0.37 10.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 CQR55083.1 - 2.1e-12 46.8 0.0 6.9e-12 45.1 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR55083.1 - 1e-10 41.3 0.0 2.7e-10 40.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 CQR55083.1 - 1.6e-09 37.2 0.0 9.6e-09 34.7 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 CQR55083.1 - 2e-06 27.5 0.0 4.9e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 CQR55083.1 - 4.4e-06 27.1 0.0 8.4e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 CQR55083.1 - 8.3e-05 22.7 0.0 0.00013 22.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 CQR55083.1 - 0.0002 21.5 0.2 0.0033 17.6 0.0 2.5 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 CQR55083.1 - 0.00049 20.2 0.0 0.00085 19.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 CQR55083.1 - 0.00082 19.2 0.1 0.0022 17.9 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 CQR55083.1 - 0.0012 18.7 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR55083.1 - 0.0014 18.7 0.0 0.0024 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR55083.1 - 0.0026 17.7 0.1 0.0078 16.2 0.0 1.8 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 CQR55083.1 - 0.024 15.0 0.1 0.051 13.9 0.0 1.6 2 0 0 2 2 1 0 Transcriptional regulator HTH_40 PF14493.6 CQR55083.1 - 0.026 15.0 0.0 0.06 13.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR55083.1 - 0.033 14.0 0.0 0.081 12.8 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF742 PF05331.11 CQR55083.1 - 0.035 13.9 0.0 0.043 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Penicillinase_R PF03965.16 CQR55083.1 - 0.039 14.3 0.0 0.069 13.5 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor RPA_C PF08784.11 CQR55083.1 - 0.053 14.2 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_1 PF00126.27 CQR55083.1 - 0.056 13.4 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 CQR55083.1 - 0.061 13.3 0.1 0.16 12.0 0.0 1.7 2 0 0 2 2 1 0 HTH domain HTH_3 PF01381.22 CQR55083.1 - 0.082 13.0 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_36 PF13730.6 CQR55083.1 - 0.16 12.0 0.0 0.4 10.7 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 CQR55083.1 - 0.16 11.8 0.0 2.4 8.0 0.0 2.7 4 0 0 4 4 4 0 LexA DNA binding domain Flavodoxin_2 PF02525.17 CQR55084.1 - 2.3e-51 174.3 0.0 2.7e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR55084.1 - 7.3e-12 45.3 0.0 1e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Proton_antipo_M PF00361.20 CQR55085.1 - 2.1e-67 227.4 24.8 2.1e-67 227.4 24.8 5.5 4 2 1 5 5 5 1 Proton-conducting membrane transporter MnhB PF04039.13 CQR55085.1 - 4.6e-34 117.4 13.1 4.6e-34 117.4 13.1 7.3 4 3 4 8 8 8 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 CQR55085.1 - 6.7e-21 74.2 7.9 6.7e-21 74.2 7.9 5.0 5 0 0 5 5 5 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 CQR55085.1 - 1.5e-10 41.0 2.7 1.5e-10 41.0 2.7 3.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 CQR55086.1 - 1.9e-30 104.6 2.7 2.3e-30 104.3 2.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Ost4 PF10215.9 CQR55086.1 - 0.013 15.3 1.1 0.036 13.9 1.1 1.8 1 0 0 1 1 1 0 Oligosaccaryltransferase DUF2070 PF09843.9 CQR55086.1 - 0.099 10.9 1.6 0.11 10.7 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Ytca PF17090.5 CQR55086.1 - 0.56 10.8 4.9 0.45 11.1 1.6 2.2 1 1 1 2 2 2 0 Uncharacterised protein family Proton_antipo_M PF00361.20 CQR55087.1 - 6.9e-47 160.1 21.4 6.9e-47 160.1 21.4 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 CQR55087.1 - 0.11 11.9 24.4 0.012 15.0 9.8 2.4 2 0 0 2 2 2 0 NADH dehydrogenase I, subunit N related protein MNHE PF01899.16 CQR55088.1 - 1.9e-42 144.5 0.1 2.2e-42 144.3 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit RhodobacterPufX PF11511.8 CQR55088.1 - 0.25 11.0 1.1 0.47 10.1 1.1 1.4 1 0 0 1 1 1 0 Intrinsic membrane protein PufX MrpF_PhaF PF04066.13 CQR55089.1 - 1.2e-17 64.0 3.3 1.2e-17 64.0 3.3 2.1 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Deltameth_res PF16020.5 CQR55089.1 - 0.0019 18.0 0.2 0.0019 18.0 0.2 1.8 2 1 0 2 2 2 1 Deltamethrin resistance DUF3325 PF11804.8 CQR55089.1 - 0.0053 16.9 0.9 0.0069 16.5 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3325) DUF3188 PF11384.8 CQR55089.1 - 0.35 10.6 4.8 0.13 12.0 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3188) ABC2_membrane_2 PF12679.7 CQR55089.1 - 0.37 10.0 4.1 0.41 9.9 4.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4131 PF13567.6 CQR55089.1 - 0.44 10.2 2.9 0.77 9.4 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) PhaG_MnhG_YufB PF03334.14 CQR55090.1 - 7.7e-26 90.1 9.3 9.5e-26 89.9 9.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF2157 PF09925.9 CQR55090.1 - 0.018 14.8 0.4 0.018 14.8 0.4 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) DUF1971 PF09313.11 CQR55090.1 - 0.025 14.6 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) PRA1 PF03208.19 CQR55090.1 - 0.67 9.6 7.4 0.92 9.1 7.4 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF2070 PF09843.9 CQR55090.1 - 5.1 5.3 7.7 5.7 5.1 7.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Abhydrolase_1 PF00561.20 CQR55091.1 - 1.9e-11 44.1 0.1 3.4e-11 43.3 0.1 1.4 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR55091.1 - 2.2e-09 38.2 0.0 2.7e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR55091.1 - 8.6e-09 35.0 0.0 1.4e-08 34.3 0.0 1.3 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 CQR55091.1 - 2.5e-06 26.4 0.0 5.4e-06 25.3 0.0 1.6 1 1 0 1 1 1 1 Ndr family Sulfatase PF00884.23 CQR55093.1 - 8.3e-41 140.4 0.4 1.3e-40 139.7 0.4 1.3 1 0 0 1 1 1 1 Sulfatase DUF1501 PF07394.12 CQR55093.1 - 0.055 12.5 0.0 0.095 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF229 PF02995.17 CQR55093.1 - 0.12 11.0 0.0 0.18 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) CcmF_C PF16327.5 CQR55093.1 - 0.15 11.3 2.7 0.2 10.9 1.6 1.8 1 1 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal MarR_2 PF12802.7 CQR55094.1 - 4.9e-11 42.3 0.0 7.9e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR55094.1 - 3.8e-09 36.9 0.1 6.8e-09 36.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 CQR55094.1 - 9.8e-08 31.8 0.1 1.7e-07 31.0 0.1 1.5 1 1 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 CQR55094.1 - 3.6e-05 23.9 0.1 5.6e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 CQR55094.1 - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ORF6N PF10543.9 CQR55094.1 - 0.0086 16.3 0.0 0.17 12.1 0.0 2.3 1 1 1 2 2 2 1 ORF6N domain Rrf2 PF02082.20 CQR55094.1 - 0.03 14.7 0.1 0.052 13.9 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 CQR55094.1 - 0.039 13.8 0.0 0.071 12.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1652 PF07865.11 CQR55094.1 - 0.045 13.6 0.5 0.099 12.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) HTH_24 PF13412.6 CQR55094.1 - 0.077 12.6 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cullin_Nedd8 PF10557.9 CQR55094.1 - 0.098 12.7 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Cullin protein neddylation domain DeoRC PF00455.22 CQR55095.1 - 2.6e-45 154.3 1.4 3.5e-45 153.8 1.4 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 CQR55095.1 - 4.3e-17 61.6 0.2 8e-17 60.7 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR55095.1 - 3.6e-08 33.2 0.1 9.2e-08 31.9 0.1 1.7 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 CQR55095.1 - 0.004 16.8 0.0 0.0095 15.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 CQR55095.1 - 0.006 16.4 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family IF-2B PF01008.17 CQR55095.1 - 0.0069 15.6 0.1 0.0096 15.2 0.1 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family HTH_12 PF08461.10 CQR55095.1 - 0.0074 16.2 0.1 0.024 14.6 0.0 1.9 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain Mga PF05043.13 CQR55095.1 - 0.0086 16.6 0.1 0.031 14.9 0.0 1.9 2 0 0 2 2 2 1 Mga helix-turn-helix domain Rrf2 PF02082.20 CQR55095.1 - 0.011 16.1 0.0 0.024 15.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 CQR55095.1 - 0.015 15.4 0.1 0.047 13.9 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 CQR55095.1 - 0.025 14.7 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 CQR55095.1 - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Fucose_iso_N2 PF07882.12 CQR55096.1 - 9e-90 299.1 0.2 1.3e-89 298.6 0.2 1.2 1 0 0 1 1 1 1 L-fucose isomerase, second N-terminal domain Fucose_iso_N1 PF07881.12 CQR55096.1 - 3.6e-77 258.0 0.0 5.7e-77 257.3 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, first N-terminal domain Fucose_iso_C PF02952.17 CQR55096.1 - 9.6e-54 181.0 0.0 1.5e-53 180.3 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain FGGY_C PF02782.16 CQR55097.1 - 8.7e-29 100.7 0.1 1.2e-28 100.2 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 CQR55097.1 - 2.1e-21 76.6 0.0 4.2e-21 75.6 0.0 1.4 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain Aldolase_II PF00596.21 CQR55098.1 - 1.4e-41 142.5 0.0 1.6e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain RbsD_FucU PF05025.13 CQR55099.1 - 7.3e-37 126.8 0.0 8.3e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 RbsD / FucU transport protein family Beta-lactamase PF00144.24 CQR55100.1 - 3.1e-63 214.0 2.5 4.8e-63 213.4 2.5 1.2 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 CQR55100.1 - 0.078 12.6 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 Beta-lactamase enzyme family Oxidored_nitro PF00148.19 CQR55102.1 - 2.3e-85 286.7 0.0 2.6e-85 286.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase VWA PF00092.28 CQR55102.1 - 0.18 12.0 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain Oxidored_nitro PF00148.19 CQR55103.1 - 1.4e-81 274.3 0.0 1.5e-81 274.2 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Nitro_FeMo-Co PF02579.17 CQR55104.1 - 3.1e-17 62.7 0.0 3.5e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Fer4_13 PF13370.6 CQR55105.1 - 1.5e-17 63.8 0.9 1.7e-17 63.7 0.9 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 CQR55105.1 - 4.1e-12 46.6 0.4 5e-12 46.4 0.4 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 CQR55105.1 - 0.00036 20.2 4.0 0.0016 18.1 0.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 CQR55105.1 - 0.0095 16.0 0.5 0.0095 16.0 0.5 2.0 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 CQR55105.1 - 0.011 15.8 0.7 0.011 15.8 0.7 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.11 CQR55105.1 - 0.012 15.7 0.2 0.033 14.3 0.2 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.6 CQR55105.1 - 0.024 14.7 2.7 0.055 13.6 2.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 CQR55105.1 - 0.041 14.5 2.3 0.23 12.1 2.3 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 CQR55105.1 - 0.13 12.4 6.5 0.71 10.0 6.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_NifH PF00142.18 CQR55106.1 - 1e-130 435.0 4.5 1.2e-130 434.8 4.5 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 CQR55106.1 - 4.5e-09 36.4 0.0 6.3e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 CQR55106.1 - 9.3e-07 28.9 0.3 2.2e-06 27.7 0.3 1.6 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 CQR55106.1 - 0.00082 18.9 0.7 0.0012 18.4 0.7 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 CQR55106.1 - 0.0015 17.8 0.1 0.0077 15.5 0.1 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 CQR55106.1 - 0.0081 15.9 0.1 0.013 15.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain MHC_II_beta PF00969.19 CQR55106.1 - 0.12 12.5 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Class II histocompatibility antigen, beta domain Oxidored_nitro PF00148.19 CQR55107.1 - 1.1e-98 330.7 0.0 1.2e-98 330.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase HEPN_RES_NTD1 PF18870.1 CQR55107.1 - 0.035 14.3 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 HEPN/RES N-terminal domain 1 AnfG_VnfG PF03139.15 CQR55108.1 - 9.8e-52 173.8 2.2 1.1e-51 173.6 2.2 1.0 1 0 0 1 1 1 1 Vanadium/alternative nitrogenase delta subunit T_Ag_DNA_bind PF02217.16 CQR55108.1 - 0.11 13.2 0.0 19 5.9 0.0 2.1 2 0 0 2 2 2 0 Origin of replication binding protein Oxidored_nitro PF00148.19 CQR55109.1 - 2.6e-115 385.3 0.0 3e-115 385.2 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase HEPN PF05168.14 CQR55110.1 - 0.00065 19.8 0.0 0.00084 19.5 0.0 1.1 1 0 0 1 1 1 1 HEPN domain Pyridox_ox_2 PF12900.7 CQR55111.1 - 3.9e-23 82.0 0.0 4.6e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 CQR55111.1 - 1.3e-07 31.7 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Rieske PF00355.26 CQR55112.1 - 5.5e-19 67.9 0.1 1e-18 67.0 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF1422 PF07226.11 CQR55113.1 - 0.0026 17.7 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1422) OpgC_C PF10129.9 CQR55113.1 - 0.027 13.4 0.1 0.037 12.9 0.1 1.1 1 0 0 1 1 1 0 OpgC protein BsuBI_PstI_RE PF06616.11 CQR55113.1 - 0.083 12.2 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease domain Phos_pyr_kin PF08543.12 CQR55114.1 - 9.9e-80 267.5 0.4 1.1e-79 267.3 0.4 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 CQR55114.1 - 6.1e-10 38.9 1.1 7.5e-10 38.6 1.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF4850 PF16142.5 CQR55115.1 - 3e-18 66.0 0.0 4.6e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4850) PsbY PF06298.11 CQR55115.1 - 0.32 10.9 1.3 0.85 9.6 1.3 1.7 1 0 0 1 1 1 0 Photosystem II protein Y (PsbY) Sigma70_r2 PF04542.14 CQR55116.1 - 9.8e-15 54.1 2.2 2.1e-14 53.1 2.2 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR55116.1 - 3.6e-11 42.5 0.3 7.2e-11 41.6 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55116.1 - 4e-08 32.7 0.2 8.1e-08 31.7 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR55116.1 - 0.00049 20.0 0.1 0.00063 19.7 0.1 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_24 PF13412.6 CQR55116.1 - 0.15 11.6 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Glycos_transf_2 PF00535.26 CQR55117.1 - 1.5e-19 70.4 0.2 3.4e-19 69.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_8 PF13181.6 CQR55117.1 - 3.5e-07 29.9 3.7 0.082 13.2 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.6 CQR55117.1 - 6.8e-07 29.7 0.3 2.9e-06 27.7 0.3 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 TPR_7 PF13176.6 CQR55117.1 - 2.3e-05 24.1 6.0 0.8 9.9 0.0 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat Glyco_tranf_2_2 PF10111.9 CQR55117.1 - 2.6e-05 23.8 0.2 0.00014 21.4 0.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 TPR_2 PF07719.17 CQR55117.1 - 4.1e-05 23.4 17.4 1.4 9.2 0.7 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.6 CQR55117.1 - 0.00025 21.5 3.2 2.7 8.8 0.1 3.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR55117.1 - 0.00028 21.1 9.1 0.54 10.6 1.5 3.5 3 1 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR55117.1 - 0.00066 19.9 7.7 0.16 12.2 0.3 2.7 2 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 CQR55117.1 - 0.00097 19.6 0.2 0.15 12.6 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 CQR55117.1 - 0.021 15.5 1.1 5.5 7.7 0.1 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 CQR55117.1 - 0.06 14.2 2.8 8.7 7.5 0.1 3.7 2 1 1 3 3 3 0 Tetratricopeptide repeat Glyco_tranf_2_3 PF13641.6 CQR55117.1 - 0.062 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family 2 TPR_1 PF00515.28 CQR55117.1 - 0.063 13.1 11.8 1.6 8.7 0.1 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 CQR55117.1 - 7.3 7.2 7.5 30 5.3 0.1 4.1 5 0 0 5 5 4 0 Tetratricopeptide repeat Lipase_GDSL_2 PF13472.6 CQR55118.1 - 9.2e-18 65.3 0.0 1.5e-17 64.5 0.0 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR55118.1 - 1.5e-13 51.2 0.0 1.9e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Glycos_transf_1 PF00534.20 CQR55119.1 - 7.6e-11 41.8 0.0 1.3e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR55119.1 - 2e-06 28.2 0.0 3.8e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR55119.1 - 2.4e-05 24.4 0.0 0.00018 21.6 0.0 2.3 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 CQR55119.1 - 8e-05 23.0 0.1 0.00019 21.7 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 CQR55119.1 - 0.011 16.2 0.0 0.035 14.5 0.0 1.9 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 CQR55119.1 - 0.071 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain DUF664 PF04978.12 CQR55120.1 - 5.2e-12 46.4 0.0 7.2e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF664) DinB_2 PF12867.7 CQR55120.1 - 2.2e-11 44.3 0.1 2.9e-11 44.0 0.1 1.1 1 0 0 1 1 1 1 DinB superfamily DUF1572 PF07609.11 CQR55120.1 - 2.9e-11 43.4 0.0 4.1e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1572) DinB PF05163.12 CQR55120.1 - 2.5e-05 24.3 0.0 3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DinB family AP_endonuc_2 PF01261.24 CQR55121.1 - 1.9e-29 102.7 0.0 2.4e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TFIIA_gamma_N PF02268.16 CQR55121.1 - 0.048 13.7 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain B12-binding PF02310.19 CQR55121.1 - 0.059 13.4 0.0 0.52 10.4 0.0 2.5 1 1 1 2 2 2 0 B12 binding domain Arg_repressor PF01316.21 CQR55121.1 - 0.068 12.9 0.1 0.51 10.1 0.0 2.2 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain AXE1 PF05448.12 CQR55122.1 - 3.5e-76 255.9 0.0 4.2e-76 255.6 0.0 1.0 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 CQR55122.1 - 1.6e-09 37.6 0.0 8e-09 35.3 0.0 1.9 2 0 0 2 2 2 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 CQR55122.1 - 1.1e-08 34.7 0.1 6.6e-05 22.3 0.0 2.3 2 1 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 CQR55122.1 - 3.8e-06 26.7 1.1 0.034 13.7 1.2 2.3 2 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 CQR55122.1 - 2.6e-05 24.9 1.1 4.2e-05 24.3 1.1 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 CQR55122.1 - 0.00021 21.0 0.0 0.00037 20.2 0.0 1.4 1 1 1 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 CQR55122.1 - 0.0014 18.6 0.1 0.0058 16.6 0.0 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 CQR55122.1 - 0.0016 18.3 0.4 0.0036 17.2 0.4 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 CQR55122.1 - 0.0017 17.9 0.0 0.041 13.4 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 CQR55122.1 - 0.0032 17.2 0.0 0.0047 16.6 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PhoPQ_related PF10142.9 CQR55122.1 - 0.005 15.6 0.2 0.033 12.9 0.2 1.9 1 1 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein Abhydrolase_2 PF02230.16 CQR55122.1 - 0.037 13.8 0.4 0.062 13.1 0.1 1.4 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase BPD_transp_2 PF02653.16 CQR55122.1 - 0.09 11.9 0.6 0.13 11.4 0.6 1.2 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component Lipase_3 PF01764.25 CQR55122.1 - 0.093 12.6 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Lipase (class 3) LtrA PF06772.11 CQR55123.1 - 6.7e-75 252.5 37.1 8e-75 252.3 37.1 1.0 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) DUF4239 PF14023.6 CQR55123.1 - 0.25 11.0 5.9 0.65 9.7 5.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) DUF1232 PF06803.12 CQR55124.1 - 6.6e-14 51.4 7.6 9.2e-14 51.0 7.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) HxlR PF01638.17 CQR55125.1 - 3.4e-38 129.4 0.4 4.1e-38 129.1 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR55125.1 - 0.027 14.4 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR55125.1 - 0.029 14.5 0.0 0.04 14.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Nitroreductase PF00881.24 CQR55126.1 - 6.2e-27 94.7 0.0 9.5e-27 94.1 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR55126.1 - 4.2e-05 23.2 0.0 0.0052 16.4 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase LrgA PF03788.14 CQR55127.1 - 4.5e-27 93.8 8.7 6.2e-27 93.4 8.7 1.2 1 0 0 1 1 1 1 LrgA family DUF2976 PF11190.8 CQR55127.1 - 0.086 12.7 0.1 0.086 12.7 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2976) DUF347 PF03988.12 CQR55127.1 - 0.12 12.5 0.2 0.12 12.5 0.2 2.5 3 0 0 3 3 3 0 Repeat of Unknown Function (DUF347) LrgB PF04172.16 CQR55128.1 - 1.9e-66 223.7 15.4 2.2e-66 223.5 15.4 1.0 1 0 0 1 1 1 1 LrgB-like family DUF2157 PF09925.9 CQR55128.1 - 0.24 11.2 6.1 0.36 10.6 5.2 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Alpha-L-AF_C PF06964.12 CQR55129.1 - 7e-39 133.6 0.0 1e-38 133.1 0.0 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain HTH_5 PF01022.20 CQR55130.1 - 1.4e-09 37.7 1.5 2.4e-09 36.9 1.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR55130.1 - 3.6e-08 33.3 0.7 6.9e-08 32.4 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR55130.1 - 0.00077 19.3 0.2 0.002 18.0 0.2 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR55130.1 - 0.00092 19.1 0.2 0.0019 18.1 0.2 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 CQR55130.1 - 0.0018 18.6 0.1 0.0044 17.3 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 CQR55130.1 - 0.003 17.1 0.3 0.0059 16.1 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 CQR55130.1 - 0.0037 17.4 0.1 0.007 16.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 CQR55130.1 - 0.017 15.6 0.1 0.043 14.3 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 CQR55130.1 - 0.055 13.4 0.4 0.12 12.3 0.4 1.6 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.11 CQR55130.1 - 0.067 13.2 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TetR_C_14 PF17754.1 CQR55133.1 - 1.7e-14 53.7 0.3 2.8e-14 53.0 0.3 1.4 1 0 0 1 1 1 1 MftR C-terminal domain TetR_N PF00440.23 CQR55133.1 - 1.2e-10 41.0 0.0 2.6e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 CQR55133.1 - 0.34 11.1 4.8 0.079 13.2 1.0 1.9 2 0 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal Peptidase_S9 PF00326.21 CQR55134.1 - 6.3e-07 29.1 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 CQR55134.1 - 6.4e-05 22.6 0.0 0.0074 15.9 0.0 2.4 1 1 0 2 2 2 2 Dienelactone hydrolase family AXE1 PF05448.12 CQR55134.1 - 0.0012 17.6 0.1 0.0036 16.0 0.0 1.7 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Esterase_phd PF10503.9 CQR55134.1 - 0.0034 16.9 0.1 0.0049 16.4 0.1 1.2 1 0 0 1 1 1 1 Esterase PHB depolymerase DUF1100 PF06500.11 CQR55134.1 - 0.018 13.9 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) ABC_trans_CmpB PF06541.11 CQR55135.1 - 1e-35 123.1 7.9 1.2e-35 123.0 7.9 1.0 1 0 0 1 1 1 1 Putative ABC-transporter type IV DUF4362 PF14275.6 CQR55136.1 - 1.1e-10 41.7 0.0 1.7e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4362) DUF3135 PF11333.8 CQR55136.1 - 0.14 12.4 0.0 0.3 11.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3135) NUDIX PF00293.28 CQR55137.1 - 2e-20 73.2 0.0 2.4e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 CQR55137.1 - 0.0057 16.6 0.0 0.009 16.0 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain DUF2809 PF10990.8 CQR55138.1 - 3.4e-27 94.9 0.5 6.6e-27 94.0 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2809) VanZ PF04892.12 CQR55138.1 - 0.00014 22.5 0.8 0.00019 22.1 0.8 1.3 1 0 0 1 1 1 1 VanZ like family CENP-I PF07778.11 CQR55138.1 - 0.068 11.9 0.1 0.079 11.7 0.1 1.0 1 0 0 1 1 1 0 Mis6 MORN PF02493.20 CQR55138.1 - 0.29 11.1 1.2 0.4 10.7 0.1 1.9 2 0 0 2 2 2 0 MORN repeat Amj PF10997.8 CQR55139.1 - 2.7e-88 295.6 13.4 3e-88 295.4 13.4 1.0 1 0 0 1 1 1 1 Alternate to MurJ DUF677 PF05055.12 CQR55139.1 - 0.027 13.4 0.1 0.041 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Cep57_MT_bd PF06657.13 CQR55140.1 - 0.019 15.4 3.1 0.14 12.7 0.6 2.8 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Bap31_Bap29_C PF18035.1 CQR55140.1 - 0.059 13.4 6.2 0.27 11.3 2.7 2.7 2 1 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain Syntaxin-6_N PF09177.11 CQR55140.1 - 0.16 12.6 1.9 0.42 11.2 0.6 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal ACP_syn_III_C PF08541.10 CQR55141.1 - 1.2e-25 89.5 0.0 8e-25 86.8 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 CQR55141.1 - 1.5e-22 79.2 0.3 3.4e-22 78.1 0.3 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Chal_sti_synt_N PF00195.19 CQR55141.1 - 1.6e-07 31.0 0.4 2.7e-07 30.2 0.4 1.3 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain L_biotic_typeA PF04604.13 CQR55141.1 - 0.036 13.9 0.0 0.074 12.9 0.0 1.5 1 0 0 1 1 1 0 Type-A lantibiotic Thiolase_N PF00108.23 CQR55141.1 - 0.062 12.7 0.8 0.15 11.4 0.2 1.7 1 1 1 2 2 2 0 Thiolase, N-terminal domain ATP-grasp_3 PF02655.14 CQR55142.1 - 7.7e-06 26.0 0.0 1.3e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 CQR55142.1 - 0.018 14.8 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon RmlD_sub_bind PF04321.17 CQR55142.1 - 0.081 12.0 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.21 CQR55143.1 - 3.9e-36 124.7 0.0 4.7e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 CQR55143.1 - 6.4e-32 110.7 0.0 7.7e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 CQR55143.1 - 6.9e-21 74.6 0.0 3.8e-17 62.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 CQR55143.1 - 6.2e-18 64.9 0.0 9.3e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 CQR55143.1 - 9e-18 64.8 0.0 4.4e-17 62.5 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 CQR55143.1 - 1.8e-17 63.9 0.0 2.2e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR55143.1 - 1.9e-10 40.7 0.0 2.8e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 CQR55143.1 - 7.5e-09 35.1 0.0 1.5e-06 27.6 0.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 CQR55143.1 - 0.00011 21.7 0.3 0.00027 20.5 0.0 1.8 3 0 0 3 3 3 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 CQR55143.1 - 0.042 13.1 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lactamase_B PF00753.27 CQR55144.1 - 7e-18 65.3 0.4 9.3e-18 64.9 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR55144.1 - 2.1e-05 24.2 0.0 2.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 CQR55145.1 - 3.2e-05 22.7 0.0 4.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Acetyltransf_6 PF13480.7 CQR55146.1 - 0.0016 18.6 0.2 0.0046 17.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain adh_short PF00106.25 CQR55147.1 - 5.7e-56 189.1 0.0 7.6e-56 188.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55147.1 - 1.8e-41 142.2 0.0 2.2e-41 141.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55147.1 - 3.8e-16 59.5 0.0 5.6e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 CQR55147.1 - 9e-06 25.3 0.0 1.9e-05 24.2 0.0 1.4 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 CQR55147.1 - 0.02 14.4 0.4 0.15 11.5 0.4 2.1 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.8 CQR55147.1 - 0.023 14.5 0.3 0.067 13.0 0.1 1.9 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.6 CQR55147.1 - 0.026 14.4 0.1 0.04 13.8 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding PALP PF00291.25 CQR55147.1 - 0.035 13.5 0.3 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme GDP_Man_Dehyd PF16363.5 CQR55147.1 - 0.16 11.3 0.0 0.69 9.3 0.0 1.9 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase DUF4265 PF14085.6 CQR55148.1 - 6e-09 35.9 0.0 7.7e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4265) Peptidase_S24 PF00717.23 CQR55149.1 - 9.9e-16 57.5 0.1 1.6e-15 56.8 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 CQR55149.1 - 0.0001 22.1 0.0 0.00035 20.4 0.0 1.8 1 1 0 1 1 1 1 Signal peptidase, peptidase S26 Dabb PF07876.12 CQR55150.1 - 4.7e-20 72.0 0.0 5.2e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain HD PF01966.22 CQR55151.1 - 1.8e-13 50.8 0.1 3e-13 50.1 0.1 1.3 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR55151.1 - 6.8e-08 32.6 0.1 1.6e-07 31.5 0.1 1.5 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 CQR55151.1 - 0.05 13.1 0.0 0.094 12.2 0.0 1.5 1 1 0 1 1 1 0 HDOD domain RelA_SpoT PF04607.17 CQR55152.1 - 1.7e-36 125.1 1.2 3.2e-36 124.1 0.1 1.9 2 0 0 2 2 2 1 Region found in RelA / SpoT proteins DUF3287 PF11690.8 CQR55152.1 - 0.038 13.7 0.3 0.12 12.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) PRKG1_interact PF15898.5 CQR55152.1 - 0.89 10.5 5.4 8.8 7.3 0.7 2.4 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain Glyco_hydro_9 PF00759.19 CQR55153.1 - 4.6e-96 322.8 1.1 5.4e-96 322.5 1.1 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 9 CelD_N PF02927.14 CQR55153.1 - 7.1e-18 65.3 0.3 1.4e-17 64.3 0.3 1.4 1 0 0 1 1 1 1 Cellulase N-terminal ig-like domain Hydrolase_like PF13242.6 CQR55154.1 - 7.8e-09 35.5 0.0 1.5e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 CQR55154.1 - 2.3e-08 34.3 0.0 3.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR55154.1 - 0.00047 20.5 0.0 0.0024 18.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR55154.1 - 0.05 14.0 0.1 0.089 13.2 0.1 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Abhydrolase_6 PF12697.7 CQR55155.1 - 4.9e-15 56.7 0.2 6.8e-15 56.3 0.2 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR55155.1 - 5.6e-10 38.9 0.0 8e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR55155.1 - 1.3e-07 31.5 0.0 2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 CQR55155.1 - 3.6e-05 23.6 0.0 6.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF676 PF05057.14 CQR55155.1 - 0.0088 15.6 0.0 0.024 14.2 0.0 1.7 1 1 0 1 1 1 1 Putative serine esterase (DUF676) Cellulase PF00150.18 CQR55155.1 - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) GGDEF PF00990.21 CQR55156.1 - 3.7e-45 153.6 0.0 7.3e-45 152.6 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 CQR55156.1 - 9.1e-27 94.4 0.3 1.7e-26 93.5 0.3 1.5 1 0 0 1 1 1 1 Cache domain Cache_3-Cache_2 PF17201.4 CQR55156.1 - 1.8e-05 24.1 0.2 5.6e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain GGDEF_2 PF17853.1 CQR55156.1 - 0.0022 18.2 0.0 0.0056 16.9 0.0 1.7 1 0 0 1 1 1 1 GGDEF-like domain dCache_2 PF08269.11 CQR55156.1 - 0.13 11.4 0.1 0.28 10.3 0.1 1.5 1 0 0 1 1 1 0 Cache domain Cupin_1 PF00190.22 CQR55157.1 - 4e-11 42.7 0.1 5.2e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 CQR55157.1 - 8.4e-06 25.4 0.0 3.2e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 Cupin domain Ectoine_synth PF06339.12 CQR55157.1 - 0.081 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Ectoine synthase Response_reg PF00072.24 CQR55158.1 - 1.3e-13 51.1 0.0 1.5e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Creatinase_N_2 PF16189.5 CQR55158.1 - 0.059 13.5 0.0 0.068 13.3 0.0 1.1 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain ADH_zinc_N PF00107.26 CQR55159.1 - 9.5e-08 32.1 0.5 1.9e-07 31.1 0.5 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 CQR55159.1 - 0.00011 23.2 0.1 0.00026 22.0 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 CQR55159.1 - 0.00012 21.9 0.0 0.0044 16.9 0.0 2.5 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 CQR55159.1 - 0.002 18.0 0.0 0.0097 15.8 0.0 2.1 2 1 0 2 2 2 1 N-terminal domain of oxidoreductase adh_short PF00106.25 CQR55159.1 - 0.0028 17.1 1.1 0.0047 16.4 1.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 CQR55159.1 - 0.0066 16.0 0.6 0.009 15.6 0.6 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 CQR55159.1 - 0.0097 15.4 0.1 0.015 14.8 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR55159.1 - 0.068 13.1 0.4 0.11 12.4 0.4 1.3 1 0 0 1 1 1 0 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 CQR55159.1 - 0.21 10.9 0.1 0.29 10.5 0.1 1.1 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase TetR_C_6 PF13977.6 CQR55160.1 - 3.5e-15 56.2 0.0 6.9e-15 55.3 0.0 1.5 1 1 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 CQR55160.1 - 1e-12 47.7 0.1 1.8e-12 46.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.11 CQR55160.1 - 0.0001 22.4 0.0 0.00016 21.8 0.0 1.2 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region ATG11 PF10377.9 CQR55160.1 - 0.0059 16.7 0.2 0.0097 16.0 0.2 1.4 1 1 0 1 1 1 1 Autophagy-related protein 11 TetR_C_2 PF08361.11 CQR55160.1 - 0.011 15.9 0.1 0.038 14.1 0.0 1.9 2 1 0 2 2 2 0 MAATS-type transcriptional repressor, C-terminal region malic PF00390.19 CQR55161.1 - 6.5e-30 104.3 0.3 2.6e-27 95.8 0.0 2.7 2 1 0 2 2 2 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 CQR55161.1 - 7.3e-28 97.5 1.9 6.1e-26 91.2 1.9 2.6 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain 2-Hacid_dh_C PF02826.19 CQR55161.1 - 0.0019 17.6 1.6 0.064 12.6 0.1 3.4 4 0 0 4 4 4 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 CQR55161.1 - 0.0042 16.5 4.6 0.0053 16.1 2.5 2.1 2 0 0 2 2 2 1 ThiF family Shikimate_DH PF01488.20 CQR55161.1 - 0.0043 17.1 0.1 0.021 14.9 0.1 2.2 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 CQR55161.1 - 0.0083 15.7 0.3 0.013 15.2 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase ELFV_dehydrog PF00208.21 CQR55161.1 - 0.042 13.6 0.1 0.094 12.4 0.1 1.6 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 CQR55161.1 - 0.058 13.7 2.6 0.42 10.9 0.0 3.4 4 0 0 4 4 4 0 TrkA-N domain ACT PF01842.25 CQR55161.1 - 0.34 10.7 2.2 1.2 8.9 0.3 2.9 3 0 0 3 3 3 0 ACT domain AAA_18 PF13238.6 CQR55162.1 - 1.9e-08 34.9 0.0 3.6e-07 30.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR55162.1 - 2.4e-06 27.7 0.0 0.00017 21.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain SKI PF01202.22 CQR55162.1 - 0.0012 19.0 0.0 0.088 12.9 0.0 2.3 2 1 0 2 2 2 1 Shikimate kinase ABC_tran PF00005.27 CQR55162.1 - 0.0028 18.2 0.0 0.004 17.7 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_28 PF13521.6 CQR55162.1 - 0.0056 16.9 0.1 0.02 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.6 CQR55162.1 - 0.12 12.5 0.1 12 5.9 0.0 2.3 1 1 1 2 2 2 0 Cytidylate kinase-like family Cytidylate_kin PF02224.18 CQR55162.1 - 0.13 11.9 0.0 1.2 8.8 0.0 2.0 1 1 1 2 2 2 0 Cytidylate kinase Thymidylate_kin PF02223.17 CQR55162.1 - 0.17 11.6 0.0 0.67 9.6 0.0 1.9 1 1 1 2 2 2 0 Thymidylate kinase MMR_HSR1 PF01926.23 CQR55162.1 - 0.22 11.6 0.0 0.57 10.3 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Acetyltransf_1 PF00583.25 CQR55163.1 - 3.1e-14 53.2 0.0 3.7e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR55163.1 - 1e-10 41.6 0.0 1.3e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR55163.1 - 8e-09 35.8 0.1 1.1e-08 35.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55163.1 - 4.7e-05 23.3 0.0 7.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 CQR55163.1 - 0.00011 22.3 0.0 0.00014 22.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55163.1 - 0.03 14.4 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR55163.1 - 0.1 12.7 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase ABC2_membrane_6 PF06182.11 CQR55164.1 - 1.2e-37 129.9 5.1 1.4e-37 129.6 5.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR55165.1 - 2.2 7.6 25.6 0.33 10.3 13.6 2.5 2 1 1 3 3 3 0 ABC-2 type transporter YrhC PF14143.6 CQR55165.1 - 5.5 7.2 5.6 5.3 7.2 0.1 2.6 2 0 0 2 2 2 0 YrhC-like protein ABC_tran PF00005.27 CQR55166.1 - 2.2e-25 89.8 0.0 2.9e-25 89.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55166.1 - 4.8e-10 39.7 0.3 2.7e-06 27.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR55166.1 - 0.0085 15.8 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 CQR55166.1 - 0.054 13.4 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 CQR55166.1 - 0.075 13.5 1.0 18 5.8 0.1 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 CQR55166.1 - 0.2 12.2 0.0 0.29 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain TetR_N PF00440.23 CQR55167.1 - 4.6e-07 29.5 0.0 7.2e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_8 PF14278.6 CQR55167.1 - 0.0003 20.8 1.2 0.0041 17.2 0.0 2.7 1 1 1 2 2 2 1 Transcriptional regulator C-terminal region HTH_Tnp_1_2 PF13022.6 CQR55167.1 - 0.02 15.0 0.6 0.038 14.1 0.2 1.7 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_AraC PF00165.23 CQR55167.1 - 0.043 13.9 0.0 0.099 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_7 PF02796.15 CQR55167.1 - 0.068 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Phage_int_SAM_4 PF13495.6 CQR55167.1 - 0.14 12.6 4.6 7.2 7.2 0.5 3.4 2 2 1 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF3791 PF12668.7 CQR55167.1 - 0.37 10.9 2.8 0.94 9.6 0.3 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3791) ApbA PF02558.16 CQR55168.1 - 2.6e-13 49.9 0.1 9e-13 48.1 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 CQR55168.1 - 1.6e-05 24.8 0.5 0.00026 20.9 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 CQR55168.1 - 0.00019 21.9 0.0 0.00044 20.6 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 CQR55168.1 - 0.00031 21.3 0.4 0.00096 19.7 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 CQR55168.1 - 0.00034 19.9 0.2 0.00089 18.6 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR55168.1 - 0.00041 20.9 3.3 0.0025 18.3 0.2 2.8 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 CQR55168.1 - 0.011 15.8 1.6 0.56 10.3 0.0 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 CQR55168.1 - 0.018 15.2 0.3 0.044 14.0 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 CQR55168.1 - 0.02 14.3 0.1 0.039 13.3 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 CQR55168.1 - 0.039 13.4 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 CQR55168.1 - 0.13 11.9 1.5 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DinB PF05163.12 CQR55169.1 - 2.3e-28 99.3 0.0 2.7e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 DinB family DinB_2 PF12867.7 CQR55169.1 - 1.3e-09 38.7 0.0 1.8e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR55169.1 - 0.0003 21.2 1.3 0.00096 19.6 1.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF664) Peptidase_U49 PF10463.9 CQR55169.1 - 0.067 12.9 0.0 0.085 12.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase U49 SBP_bac_5 PF00496.22 CQR55170.1 - 1.2e-37 129.8 0.0 2.1e-37 129.0 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SgrR_N PF12793.7 CQR55170.1 - 6.6e-24 84.3 0.0 1.6e-23 83.1 0.0 1.6 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term Dimerisation PF08100.11 CQR55170.1 - 0.15 12.1 0.0 28 4.8 0.0 2.6 2 0 0 2 2 2 0 Dimerisation domain HTH_20 PF12840.7 CQR55170.1 - 0.18 11.9 0.4 12 6.0 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3839 PF12943.7 CQR55170.1 - 0.19 11.2 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) DUF4173 PF13777.6 CQR55171.1 - 2.7e-53 180.3 12.2 2.7e-53 180.3 12.2 3.3 4 0 0 4 4 4 1 Domain of unknown function (DUF4173) cNMP_binding PF00027.29 CQR55172.1 - 2.1e-14 53.3 0.0 4.7e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR55172.1 - 2.7e-10 40.1 0.2 5.1e-10 39.2 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 CQR55172.1 - 6.2e-05 22.7 0.1 0.00025 20.7 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 CQR55172.1 - 0.00014 21.8 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 CQR55172.1 - 0.00089 19.3 0.2 0.0026 17.8 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR55172.1 - 0.014 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 MarR family PaaX PF07848.12 CQR55172.1 - 0.02 15.1 0.2 0.038 14.2 0.2 1.4 1 0 0 1 1 1 0 PaaX-like protein Rrf2 PF02082.20 CQR55172.1 - 0.033 14.5 0.0 0.065 13.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 CQR55172.1 - 0.039 13.5 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AraC PF00165.23 CQR55172.1 - 0.098 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4256 PF14066.6 CQR55173.1 - 9.9e-94 311.8 0.0 1.1e-93 311.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4256) CARDB PF07705.11 CQR55174.1 - 7.6e-28 96.8 23.9 7.9e-22 77.5 3.1 5.1 4 0 0 4 4 4 3 CARDB F5_F8_type_C PF00754.25 CQR55174.1 - 5e-27 94.5 8.3 1.5e-17 63.9 2.1 3.2 2 0 0 2 2 2 2 F5/8 type C domain CBM_35 PF16990.5 CQR55174.1 - 6.2e-08 32.9 2.5 6.2e-08 32.9 2.5 3.9 3 0 0 3 3 3 1 Carbohydrate binding module (family 35) CBM_6 PF03422.15 CQR55174.1 - 1.5e-06 28.5 5.4 1.5e-06 28.5 5.4 6.3 6 2 1 7 7 7 1 Carbohydrate binding module (family 6) Beta_helix PF13229.6 CQR55174.1 - 0.0016 18.3 15.0 0.0016 18.3 15.0 3.4 2 1 2 4 4 4 3 Right handed beta helix region DUF4832 PF16116.5 CQR55174.1 - 0.023 14.6 0.3 0.09 12.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4832) Endotoxin_C PF03944.14 CQR55174.1 - 0.1 12.9 1.6 1.2 9.5 0.4 3.6 2 0 0 2 2 2 0 delta endotoxin PALP PF00291.25 CQR55175.1 - 1.7e-71 241.0 0.4 2e-71 240.8 0.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 CQR55175.1 - 0.019 14.9 0.2 0.058 13.4 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase TLP1_add_C PF18313.1 CQR55176.1 - 0.13 12.2 0.1 0.43 10.5 0.0 1.8 2 0 0 2 2 2 0 Thiolase-like protein type 1 additional C-terminal domain HisKA_3 PF07730.13 CQR55177.1 - 7.8e-10 39.1 2.0 1.3e-09 38.4 0.6 2.1 1 1 1 2 2 2 1 Histidine kinase HATPase_c_2 PF13581.6 CQR55177.1 - 1.5e-05 25.0 0.0 2.6e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 CQR55177.1 - 0.0016 18.9 0.1 0.0056 17.2 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR55178.1 - 1.4e-27 96.1 0.1 1.2e-26 93.0 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain GerE PF00196.19 CQR55178.1 - 7.6e-22 76.6 0.6 1.3e-21 75.9 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 CQR55178.1 - 3.1e-07 29.8 0.0 1e-06 28.1 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 CQR55178.1 - 4.2e-07 29.5 0.0 9.9e-07 28.3 0.0 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 CQR55178.1 - 8e-05 22.4 1.1 0.00017 21.3 0.1 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.6 CQR55178.1 - 0.00013 21.7 0.0 0.0004 20.1 0.0 1.9 1 1 0 1 1 1 1 Homeodomain-like domain HTH_40 PF14493.6 CQR55178.1 - 0.00049 20.5 0.7 0.027 14.9 0.2 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain DUF2089 PF09862.9 CQR55178.1 - 0.0018 18.3 0.2 0.0058 16.7 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) Sigma70_ECF PF07638.11 CQR55178.1 - 0.0025 17.7 0.1 0.0057 16.6 0.1 1.7 2 0 0 2 2 2 1 ECF sigma factor HTH_24 PF13412.6 CQR55178.1 - 0.003 17.1 0.1 0.0062 16.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR55178.1 - 0.036 14.0 0.1 0.077 13.0 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_Tnp_ISL3 PF13542.6 CQR55178.1 - 0.057 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 CQR55178.1 - 0.067 13.0 0.1 0.6 10.0 0.0 2.3 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 CQR55178.1 - 0.084 12.9 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 CQR55178.1 - 0.09 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.20 CQR55178.1 - 0.093 12.6 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.6 CQR55178.1 - 0.097 12.8 0.0 0.33 11.0 0.0 1.9 2 0 0 2 2 1 0 HTH domain Phage_terminase PF10668.9 CQR55178.1 - 0.11 12.6 0.1 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Phage terminase small subunit HTH_29 PF13551.6 CQR55178.1 - 0.12 12.4 0.0 0.35 10.9 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_38 PF13936.6 CQR55178.1 - 0.16 11.8 1.6 0.38 10.6 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1775 PF07987.11 CQR55179.1 - 2e-15 57.3 2.0 8.6e-13 48.8 2.0 2.1 1 1 0 1 1 1 1 Domain of unkown function (DUF1775) CBM60 PF16841.5 CQR55179.1 - 0.17 12.3 0.5 23 5.5 0.0 2.4 1 1 1 2 2 2 0 Ca-dependent carbohydrate-binding module xylan-binding CotH PF08757.11 CQR55180.1 - 3.1e-67 227.4 3.0 3.9e-67 227.1 3.0 1.1 1 0 0 1 1 1 1 CotH kinase protein Serglycin PF04360.12 CQR55180.1 - 0.32 10.9 3.4 0.72 9.8 3.4 1.5 1 0 0 1 1 1 0 Serglycin DUF4956 PF16316.5 CQR55181.1 - 4e-08 33.1 9.5 5.8e-08 32.6 9.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4956) MgtC PF02308.16 CQR55181.1 - 0.0023 18.3 12.4 0.0079 16.6 12.4 1.8 1 1 0 1 1 1 1 MgtC family DUF3951 PF13131.6 CQR55181.1 - 0.13 12.5 14.4 0.29 11.3 2.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) VTC PF09359.10 CQR55182.1 - 2.6e-24 86.1 3.7 7.6e-24 84.6 3.7 1.7 1 1 0 1 1 1 1 VTC domain Pur_ac_phosph_N PF16656.5 CQR55183.1 - 1.2e-16 61.1 1.0 4.4e-16 59.2 0.1 2.4 3 0 0 3 3 3 1 Purple acid Phosphatase, N-terminal domain Metallophos PF00149.28 CQR55183.1 - 1.7e-14 54.8 0.3 3.4e-14 53.8 0.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PhoD_N PF16655.5 CQR55183.1 - 0.0061 17.1 0.0 0.014 15.9 0.0 1.7 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain CBM_X2 PF03442.14 CQR55184.1 - 1e-64 214.6 16.9 7.3e-33 112.5 3.5 2.7 2 0 0 2 2 2 2 Carbohydrate binding domain X2 CBM_3 PF00942.18 CQR55184.1 - 3.7e-28 97.8 0.3 1.8e-27 95.6 0.3 2.3 1 0 0 1 1 1 1 Cellulose binding domain Sortilin-Vps10 PF15902.5 CQR55184.1 - 2.9e-16 59.3 9.3 6.1e-06 25.3 0.0 5.9 3 2 2 6 6 6 6 Sortilin, neurotensin receptor 3, BNR PF02012.20 CQR55184.1 - 7.1e-08 31.3 39.7 0.3 11.3 0.3 9.8 8 0 0 8 8 8 5 BNR/Asp-box repeat DUF1735 PF08522.10 CQR55184.1 - 2.2e-05 25.1 13.9 0.017 15.7 2.3 3.0 1 1 1 2 2 2 2 Domain of unknown function (DUF1735) SlpA PF03217.14 CQR55184.1 - 0.091 13.4 11.7 0.86 10.2 0.6 3.6 3 0 0 3 3 3 0 Surface later protein A domain Tafi-CsgC PF10610.9 CQR55184.1 - 0.095 12.9 1.4 7.6 6.8 0.1 2.7 2 0 0 2 2 2 0 Thin aggregative fimbriae synthesis protein BNR_6 PF15899.5 CQR55184.1 - 0.5 10.6 10.3 7.9 6.8 0.0 6.0 6 0 0 6 6 6 0 BNR-Asp box repeat adh_short PF00106.25 CQR55185.1 - 9.5e-55 185.1 2.6 9.5e-55 185.1 2.6 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55185.1 - 2.2e-53 181.2 3.5 2.6e-53 181.0 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55185.1 - 1e-14 54.9 1.3 1.5e-14 54.4 1.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR55185.1 - 0.00029 20.4 0.1 0.00046 19.7 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family BAT PF15915.5 CQR55185.1 - 0.02 14.8 0.4 0.034 14.0 0.4 1.4 1 0 0 1 1 1 0 GAF and HTH_10 associated domain DUF3459 PF11941.8 CQR55185.1 - 0.047 14.0 0.3 2.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3459) Polysacc_synt_2 PF02719.15 CQR55185.1 - 0.057 12.5 0.1 0.09 11.9 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DNA_pol3_delta2 PF13177.6 CQR55185.1 - 0.12 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit LysR_substrate PF03466.20 CQR55186.1 - 2.4e-42 144.7 0.1 2.8e-42 144.4 0.1 1.1 1 0 0 1 1 1 1 LysR substrate binding domain Glutaredoxin PF00462.24 CQR55186.1 - 0.16 12.2 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin Methyltransf_11 PF08241.12 CQR55187.1 - 5.2e-05 23.8 0.1 0.00054 20.6 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR55187.1 - 0.034 14.8 0.2 0.41 11.4 0.0 2.3 1 1 1 2 2 2 0 Methyltransferase domain Nitroreductase PF00881.24 CQR55189.1 - 2.8e-22 79.6 0.3 4.6e-22 78.9 0.3 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR55189.1 - 4.2e-06 26.5 0.0 0.035 13.7 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase DUF1641 PF07849.11 CQR55190.1 - 2.2e-07 30.7 0.1 5e-06 26.3 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF1641) Gln-synt_N_2 PF16952.5 CQR55190.1 - 0.02 14.7 0.1 0.058 13.2 0.1 1.8 1 1 1 2 2 2 0 Glutamine synthetase N-terminal domain TFIID_20kDa PF03847.13 CQR55190.1 - 0.041 14.4 1.7 0.059 13.9 0.3 2.0 2 0 0 2 2 2 0 Transcription initiation factor TFIID subunit A MitMem_reg PF13012.6 CQR55190.1 - 0.076 13.4 0.9 0.21 12.0 0.9 1.8 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function ApoLp-III PF07464.11 CQR55190.1 - 0.12 12.5 3.7 0.67 10.0 0.3 2.3 1 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Pyr_redox_2 PF07992.14 CQR55191.1 - 6.5e-41 140.5 1.3 9.2e-41 140.0 1.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR55191.1 - 9.3e-08 32.5 0.3 0.00019 21.9 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 CQR55191.1 - 0.022 14.7 0.1 3.8 7.5 0.0 2.7 1 1 1 2 2 2 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 CQR55191.1 - 0.14 11.4 0.2 3.6 6.8 0.0 2.8 2 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR55191.1 - 0.16 10.7 1.9 7.6 5.1 0.2 2.9 2 1 0 3 3 3 0 HI0933-like protein DAO PF01266.24 CQR55191.1 - 0.16 11.5 4.4 6 6.4 0.2 2.9 1 1 2 3 3 3 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 CQR55191.1 - 0.22 10.4 0.1 0.38 9.6 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase DUF2785 PF10978.8 CQR55193.1 - 1.4e-33 116.1 0.0 1.7e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2785) Lipase_GDSL_2 PF13472.6 CQR55194.1 - 9.7e-27 94.5 0.0 1.1e-26 94.3 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR55194.1 - 6.5e-10 39.3 0.0 8.9e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF664 PF04978.12 CQR55194.1 - 0.16 12.4 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF664) Peptidase_M24 PF00557.24 CQR55196.1 - 4.8e-39 134.2 0.1 5.4e-39 134.0 0.1 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.16 CQR55196.1 - 0.024 15.2 0.0 1.1 9.9 0.0 2.2 2 0 0 2 2 2 0 ATP cone domain CMD PF02627.20 CQR55197.1 - 1.1e-12 47.9 0.1 1.4e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DJ-1_PfpI PF01965.24 CQR55198.1 - 4.2e-16 59.2 0.0 5.1e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 CQR55198.1 - 0.15 11.7 0.0 0.26 11.0 0.0 1.5 1 1 0 1 1 1 0 ThiJ/PfpI family-like HEAT_2 PF13646.6 CQR55199.1 - 0.0058 17.0 0.8 0.044 14.2 0.3 2.5 2 0 0 2 2 2 1 HEAT repeats HEAT PF02985.22 CQR55199.1 - 0.016 15.4 0.0 0.063 13.6 0.0 2.0 1 0 0 1 1 1 0 HEAT repeat LisH_2 PF16045.5 CQR55199.1 - 0.042 12.9 0.0 0.11 11.5 0.0 1.7 1 0 0 1 1 1 0 LisH Mu-like_Pro PF10123.9 CQR55199.1 - 0.051 13.1 0.0 2 7.9 0.0 2.1 1 1 1 2 2 2 0 Mu-like prophage I protein Rrf2 PF02082.20 CQR55200.1 - 2.1e-22 79.2 0.1 3.7e-22 78.5 0.0 1.4 2 0 0 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 CQR55200.1 - 0.013 15.1 0.1 0.026 14.2 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Macro PF01661.21 CQR55201.1 - 3.3e-22 78.8 0.3 4.2e-22 78.4 0.3 1.1 1 0 0 1 1 1 1 Macro domain Sigma70_r3 PF04539.16 CQR55202.1 - 0.0023 18.0 0.0 0.0033 17.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_17 PF12728.7 CQR55202.1 - 0.0059 16.8 0.0 0.022 15.0 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR55202.1 - 0.0093 15.4 0.0 0.021 14.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 CQR55202.1 - 0.016 14.7 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 ANT PF03374.14 CQR55202.1 - 0.067 13.5 0.0 0.089 13.1 0.0 1.2 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_23 PF13384.6 CQR55202.1 - 0.079 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Metallophos_2 PF12850.7 CQR55203.1 - 2.3e-20 73.4 0.0 3.8e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 CQR55203.1 - 4.5e-09 37.1 0.1 8.2e-09 36.3 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Glyoxalase PF00903.25 CQR55204.1 - 7.1e-21 74.7 0.1 1.3e-11 44.8 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 CQR55204.1 - 1.2e-06 28.4 0.0 0.026 14.4 0.0 3.0 3 0 0 3 3 3 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 CQR55204.1 - 1.6e-05 25.1 0.0 0.2 12.0 0.0 2.9 2 2 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.6 CQR55204.1 - 0.00075 19.6 0.0 0.1 12.6 0.0 2.6 3 0 0 3 3 3 1 CppA N-terminal Glyoxalase_6 PF18029.1 CQR55204.1 - 0.0047 17.7 0.0 0.93 10.3 0.0 2.6 2 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 CQR55204.1 - 0.11 12.6 2.8 0.17 12.0 1.4 2.0 3 1 0 3 3 3 0 Glyoxalase-like domain Branch PF02485.21 CQR55205.1 - 4.1e-22 78.9 0.2 1.2e-21 77.3 0.2 1.6 1 1 0 1 1 1 1 Core-2/I-Branching enzyme Lactamase_B PF00753.27 CQR55206.1 - 4.4e-22 79.1 1.6 9.4e-22 78.0 1.6 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR55206.1 - 4e-06 26.5 0.1 5.3e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 CQR55206.1 - 0.00031 20.3 0.0 0.00048 19.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain HTH_3 PF01381.22 CQR55207.1 - 2.7e-17 62.6 0.3 3e-17 62.4 0.3 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR55207.1 - 5.2e-11 42.4 0.9 5.6e-11 42.3 0.9 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR55207.1 - 4.7e-10 39.7 0.0 5.3e-10 39.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR55207.1 - 4.2e-07 30.3 0.0 5.7e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 CQR55207.1 - 2e-05 24.5 0.1 7.5e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_25 PF13413.6 CQR55207.1 - 6.4e-05 22.7 0.1 0.00011 22.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR55207.1 - 0.0006 19.3 0.2 0.00094 18.7 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 CQR55207.1 - 0.0035 17.2 0.0 0.0039 17.0 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_DeoR PF08220.12 CQR55207.1 - 0.0037 17.0 0.0 0.0096 15.7 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 CQR55207.1 - 0.0064 16.2 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 CQR55207.1 - 0.0077 15.7 0.2 0.014 14.9 0.2 1.5 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.22 CQR55207.1 - 0.0089 15.9 0.0 0.022 14.7 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_37 PF13744.6 CQR55207.1 - 0.019 14.9 0.1 0.024 14.6 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 CQR55207.1 - 0.061 13.0 0.1 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 CQR55207.1 - 0.066 12.9 0.6 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 CQR55207.1 - 0.081 12.8 0.1 0.15 12.0 0.0 1.4 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 CQR55207.1 - 0.094 12.7 0.0 0.18 11.8 0.0 1.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.13 CQR55207.1 - 0.1 12.7 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_7 PF02796.15 CQR55207.1 - 0.12 12.5 0.3 0.26 11.4 0.2 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Reticulon PF02453.17 CQR55208.1 - 0.038 14.0 2.0 1.5 8.8 0.0 2.0 1 1 1 2 2 2 0 Reticulon DUF2721 PF11026.8 CQR55208.1 - 4.3 7.2 10.2 0.77 9.7 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Na_H_Exchanger PF00999.21 CQR55209.1 - 2.2e-65 220.9 46.6 2.9e-65 220.5 46.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Acetyltransf_4 PF13420.7 CQR55210.1 - 1.5e-16 61.0 0.0 1.9e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55210.1 - 3.6e-11 43.3 0.0 4.6e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 CQR55210.1 - 4.2e-08 33.9 0.0 5.1e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55210.1 - 3.1e-05 23.9 0.0 4.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein ThrE_2 PF12821.7 CQR55211.1 - 5.5e-38 130.0 8.3 6.1e-38 129.9 8.3 1.0 1 0 0 1 1 1 1 Threonine/Serine exporter, ThrE ThrE PF06738.12 CQR55211.1 - 1.5e-10 40.8 12.0 1.7e-10 40.7 12.0 1.0 1 0 0 1 1 1 1 Putative threonine/serine exporter DUF543 PF04418.12 CQR55211.1 - 0.1 12.6 1.6 0.16 12.0 0.1 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF543) MASE3 PF17159.4 CQR55211.1 - 0.64 9.6 5.5 0.29 10.7 0.8 2.0 1 1 1 2 2 2 0 Membrane-associated sensor domain DUF2628 PF10947.8 CQR55211.1 - 3.7 8.0 6.7 4.6 7.7 1.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2628) ThrE PF06738.12 CQR55212.1 - 9e-77 257.7 5.4 1e-76 257.5 5.4 1.0 1 0 0 1 1 1 1 Putative threonine/serine exporter ThrE_2 PF12821.7 CQR55212.1 - 6.1e-12 45.8 8.6 9.2e-12 45.2 8.6 1.3 1 0 0 1 1 1 1 Threonine/Serine exporter, ThrE YitT_membrane PF02588.15 CQR55213.1 - 6.8e-34 117.0 24.2 8.3e-34 116.8 24.2 1.0 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF5429 PF17494.2 CQR55214.1 - 0.1 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5429) HTH_18 PF12833.7 CQR55215.1 - 2e-21 76.0 0.5 3.6e-21 75.2 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55215.1 - 1.9e-17 62.9 0.0 1.9e-08 34.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Glyco_hydro_127 PF07944.12 CQR55216.1 - 4.2e-177 589.8 0.1 5.2e-177 589.5 0.1 1.0 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 CQR55216.1 - 0.00012 21.3 0.1 0.00033 19.8 0.1 1.8 1 1 1 2 2 2 1 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 CQR55216.1 - 0.001 18.7 0.2 0.0052 16.4 0.0 2.2 2 1 0 2 2 2 1 Glycosyl hydrolase family 76 DUF817 PF05675.12 CQR55217.1 - 5.2e-101 337.3 19.2 5.9e-101 337.1 19.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF817) ABC2_membrane_5 PF13346.6 CQR55217.1 - 5.9 6.4 20.9 2.4 7.7 7.9 2.7 1 1 1 2 2 2 0 ABC-2 family transporter protein AAA_16 PF13191.6 CQR55218.1 - 0.00026 21.4 0.0 0.0011 19.4 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 CQR55218.1 - 0.00097 18.7 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 CQR55218.1 - 0.0014 18.8 0.0 0.0028 17.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR55218.1 - 0.002 18.6 0.0 0.0044 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 CQR55218.1 - 0.003 17.2 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase APS_kinase PF01583.20 CQR55218.1 - 0.0088 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF2075 PF09848.9 CQR55218.1 - 0.014 14.6 0.0 0.19 10.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Mur_ligase_M PF08245.12 CQR55218.1 - 0.016 15.2 0.1 0.035 14.1 0.0 1.6 2 0 0 2 2 2 0 Mur ligase middle domain AAA_30 PF13604.6 CQR55218.1 - 0.02 14.6 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 CQR55218.1 - 0.021 14.2 0.1 0.045 13.1 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 CQR55218.1 - 0.023 15.0 0.0 0.046 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 CQR55218.1 - 0.033 13.9 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_3 PF07726.11 CQR55218.1 - 0.041 13.7 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 CQR55218.1 - 0.075 12.9 0.2 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.12 CQR55218.1 - 0.082 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 CQR55218.1 - 0.09 13.1 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 CQR55218.1 - 0.1 13.1 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 CQR55218.1 - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.12 CQR55218.1 - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Glyco_hydro_36 PF17167.4 CQR55219.1 - 1.9e-183 610.0 0.1 2.3e-183 609.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 CQR55219.1 - 9.5e-84 280.7 0.1 1.7e-83 279.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 36 Peripla_BP_3 PF13377.6 CQR55220.1 - 4.1e-38 131.3 0.0 6.4e-38 130.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR55220.1 - 1.4e-18 66.4 1.9 1.6e-18 66.2 0.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR55220.1 - 4.9e-15 55.7 0.0 6.4e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR55220.1 - 4.8e-10 39.5 0.0 7.3e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR55220.1 - 6.7e-05 22.9 0.1 0.00013 21.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 CQR55220.1 - 0.00042 20.0 0.0 0.00092 18.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 CQR55220.1 - 0.0021 18.0 0.0 0.0067 16.4 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 CQR55220.1 - 0.016 15.0 0.1 0.045 13.5 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 CQR55220.1 - 0.02 15.0 0.0 0.19 11.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 CQR55220.1 - 0.043 13.8 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Crp PF00325.20 CQR55220.1 - 0.043 13.5 0.1 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_31 PF13560.6 CQR55220.1 - 0.046 14.1 0.0 0.098 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 CQR55220.1 - 0.074 13.3 0.0 0.25 11.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR55220.1 - 0.085 13.0 0.0 0.37 11.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR55220.1 - 0.097 12.1 0.1 1.5 8.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.6 CQR55220.1 - 0.11 12.5 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.7 CQR55220.1 - 0.13 12.3 0.2 0.97 9.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 CQR55220.1 - 0.17 11.8 0.0 0.42 10.5 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_IclR PF09339.10 CQR55220.1 - 0.18 11.6 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Tnp_4 PF13613.6 CQR55220.1 - 0.19 11.5 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MarR_2 PF12802.7 CQR55220.1 - 0.2 11.6 0.0 0.43 10.5 0.0 1.6 1 0 0 1 1 1 0 MarR family Acetyltransf_1 PF00583.25 CQR55221.1 - 9.5e-11 42.0 0.0 1.2e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55221.1 - 2.2e-06 28.0 0.0 2.9e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55221.1 - 3.7e-05 23.6 0.0 5.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 CQR55221.1 - 5.3e-05 23.2 0.0 6.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 CQR55221.1 - 0.028 14.6 0.0 0.047 13.8 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR55221.1 - 0.038 13.7 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55221.1 - 0.087 13.0 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CoA_binding_2 PF13380.6 CQR55221.1 - 0.1 13.1 0.0 0.22 12.0 0.0 1.6 1 1 0 1 1 1 0 CoA binding domain NTP_transf_3 PF12804.7 CQR55221.1 - 0.12 12.7 0.0 0.27 11.6 0.0 1.5 2 0 0 2 2 2 0 MobA-like NTP transferase domain PLN_propep PF16485.5 CQR55222.1 - 0.07 12.9 0.3 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 Protealysin propeptide YjcZ_2 PF09680.10 CQR55224.1 - 0.12 12.0 10.0 0.12 12.0 10.0 2.2 2 0 0 2 2 2 0 Family of unknown function ABC_membrane PF00664.23 CQR55225.1 - 1.7e-35 123.0 15.5 2.1e-35 122.7 15.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR55225.1 - 2.8e-31 108.9 0.0 5.4e-31 107.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55225.1 - 0.00017 21.1 0.3 0.023 14.2 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR55225.1 - 0.00074 19.5 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase Zeta_toxin PF06414.12 CQR55225.1 - 0.00086 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 CQR55225.1 - 0.0019 17.9 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR55225.1 - 0.0051 16.8 0.0 0.014 15.4 0.0 1.8 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 CQR55225.1 - 0.011 15.4 0.1 0.026 14.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 CQR55225.1 - 0.013 15.9 0.0 0.05 14.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 CQR55225.1 - 0.013 15.5 0.1 0.37 10.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 CQR55225.1 - 0.017 15.5 0.0 0.047 14.1 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain Herpes_UL79 PF03049.14 CQR55225.1 - 0.017 14.8 0.0 0.046 13.4 0.0 1.7 1 0 0 1 1 1 0 UL79 family AAA_21 PF13304.6 CQR55225.1 - 0.023 14.5 0.0 0.17 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR55225.1 - 0.032 14.5 0.1 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 CQR55225.1 - 0.041 13.0 0.0 0.073 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_5 PF07728.14 CQR55225.1 - 0.075 13.0 0.1 0.27 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MLTD_N PF06474.12 CQR55225.1 - 0.083 13.1 0.1 0.36 11.0 0.1 2.2 1 0 0 1 1 1 0 MltD lipid attachment motif RNA_helicase PF00910.22 CQR55225.1 - 0.086 13.2 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Nuc_recep-AF1 PF11825.8 CQR55225.1 - 0.098 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 AAA_7 PF12775.7 CQR55225.1 - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 CQR55225.1 - 0.13 12.4 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 CQR55225.1 - 0.13 12.5 0.2 0.5 10.6 0.1 2.0 1 1 1 2 2 2 0 AAA domain EI24 PF07264.11 CQR55225.1 - 0.19 11.9 11.4 0.035 14.4 6.1 2.0 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DeoRC PF00455.22 CQR55225.1 - 0.25 11.3 1.0 0.38 10.7 0.1 1.7 2 0 0 2 2 2 0 DeoR C terminal sensor domain FlaC_arch PF05377.11 CQR55225.1 - 0.52 10.7 2.2 2.3 8.7 0.0 2.8 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) ABC_membrane_3 PF13748.6 CQR55225.1 - 1.8 7.7 8.2 5.4 6.2 1.7 2.2 2 0 0 2 2 2 0 ABC transporter transmembrane region Tetraspanin PF00335.20 CQR55225.1 - 6.2 6.5 10.0 0.72 9.5 4.2 2.2 2 0 0 2 2 2 0 Tetraspanin family HTH_5 PF01022.20 CQR55226.1 - 3.3e-10 39.7 0.8 8.1e-10 38.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR55226.1 - 3.5e-08 33.4 0.5 1.4e-07 31.4 0.1 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR55226.1 - 5.8e-06 25.8 0.0 2.7e-05 23.6 0.0 2.2 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 CQR55226.1 - 0.00094 18.9 0.2 0.0034 17.2 0.1 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain GerE PF00196.19 CQR55226.1 - 0.0027 17.2 0.0 0.0058 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TrmB PF01978.19 CQR55226.1 - 0.0062 16.4 0.1 0.029 14.2 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 CQR55226.1 - 0.014 15.3 0.0 0.073 13.0 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.12 CQR55226.1 - 0.015 15.2 0.1 0.068 13.1 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_45 PF14947.6 CQR55226.1 - 0.031 14.3 1.6 0.87 9.6 0.2 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_AsnC-type PF13404.6 CQR55226.1 - 0.052 13.4 0.2 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 CQR55226.1 - 0.057 13.6 0.3 0.29 11.4 0.1 2.2 3 0 0 3 3 2 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 CQR55226.1 - 0.11 12.2 0.0 0.32 10.7 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.12 CQR55226.1 - 0.16 12.4 0.1 0.54 10.7 0.0 2.0 3 0 0 3 3 1 0 FaeA-like protein LexA_DNA_bind PF01726.16 CQR55226.1 - 0.16 11.8 0.0 0.37 10.6 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Acetyltransf_1 PF00583.25 CQR55227.1 - 3.6e-17 62.7 0.2 4.5e-17 62.4 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR55227.1 - 5.7e-14 52.1 2.1 1e-13 51.3 2.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR55227.1 - 1.3e-11 44.7 0.4 2e-11 44.2 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55227.1 - 6.7e-08 32.8 3.6 7.8e-08 32.6 3.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55227.1 - 7.4e-08 32.3 0.1 1.1e-07 31.7 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 CQR55227.1 - 1e-06 29.4 0.2 1.3e-06 29.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 CQR55227.1 - 0.00055 19.5 3.5 0.001 18.6 3.4 1.5 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_CG PF14542.6 CQR55227.1 - 0.00087 19.4 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 CQR55227.1 - 0.015 15.0 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Nitrate_red_del PF02613.15 CQR55227.1 - 0.016 15.2 0.1 0.029 14.4 0.1 1.4 1 0 0 1 1 1 0 Nitrate reductase delta subunit T2SSB PF16537.5 CQR55227.1 - 0.028 14.0 0.1 0.047 13.3 0.1 1.3 1 0 0 1 1 1 0 Type II secretion system protein B DUF3537 PF12056.8 CQR55227.1 - 0.04 12.7 0.5 0.062 12.1 0.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3537) TPR_8 PF13181.6 CQR55227.1 - 0.068 13.4 2.3 5.1 7.6 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Retrotrans_gag PF03732.17 CQR55227.1 - 0.079 13.2 0.4 0.14 12.4 0.4 1.5 1 0 0 1 1 1 0 Retrotransposon gag protein Acetyltransf_16 PF05301.11 CQR55227.1 - 0.23 11.2 3.4 1.7 8.4 0.1 2.7 2 1 1 3 3 3 0 GNAT acetyltransferase, Mec-17 MarR PF01047.22 CQR55228.1 - 9.9e-16 57.4 0.2 4.1e-15 55.4 0.0 2.1 3 0 0 3 3 2 1 MarR family TrmB PF01978.19 CQR55228.1 - 2e-08 34.0 0.1 4.4e-06 26.5 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 CQR55228.1 - 1.3e-07 31.4 0.0 2.6e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR55228.1 - 6.6e-07 29.7 0.0 1.4e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 CQR55228.1 - 2.3e-05 24.5 0.0 5.1e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 CQR55228.1 - 0.00019 21.3 0.0 0.00032 20.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR55228.1 - 0.0002 20.9 0.4 0.00036 20.0 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 CQR55228.1 - 0.0019 17.8 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 CQR55228.1 - 0.0036 17.2 0.0 0.0071 16.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain DUF1819 PF08849.11 CQR55228.1 - 0.0049 16.7 0.1 0.0075 16.1 0.1 1.3 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) HTH_36 PF13730.6 CQR55228.1 - 0.0053 16.7 0.1 0.012 15.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 CQR55228.1 - 0.0084 15.8 1.5 0.012 15.3 0.3 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4423) B-block_TFIIIC PF04182.12 CQR55228.1 - 0.01 16.0 0.1 0.021 15.0 0.1 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF3116 PF11313.8 CQR55228.1 - 0.02 14.7 0.2 0.097 12.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) Ribosomal_S25 PF03297.15 CQR55228.1 - 0.022 14.9 0.1 0.044 14.0 0.1 1.5 1 0 0 1 1 1 0 S25 ribosomal protein HxlR PF01638.17 CQR55228.1 - 0.054 13.3 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.14 CQR55228.1 - 0.058 13.4 0.2 0.34 10.9 0.1 2.1 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 CQR55228.1 - 0.077 12.6 0.1 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 CodY helix-turn-helix domain SMC_ScpB PF04079.16 CQR55228.1 - 0.091 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB NPAT_C PF15712.5 CQR55228.1 - 0.46 9.1 1.9 0.62 8.6 1.9 1.0 1 0 0 1 1 1 0 NPAT C terminus IMS PF00817.20 CQR55230.1 - 1.7e-38 132.0 0.0 3e-38 131.1 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 CQR55230.1 - 5.3e-12 46.5 0.0 1.1e-11 45.5 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain AgrB PF04647.15 CQR55233.1 - 9.6e-20 70.6 8.8 1.2e-19 70.3 8.8 1.1 1 0 0 1 1 1 1 Accessory gene regulator B AgrD PF05931.11 CQR55234.1 - 0.14 12.2 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Staphylococcal AgrD protein DUF3333 PF11812.8 CQR55234.1 - 0.26 11.5 0.8 0.3 11.3 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) LytTR PF04397.15 CQR55235.1 - 8.1e-06 26.0 0.0 1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 LytTr DNA-binding domain DUF4992 PF16383.5 CQR55235.1 - 0.082 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function SnoaL_2 PF12680.7 CQR55240.1 - 1.2e-08 35.6 0.0 1.3e-08 35.4 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like domain Lumazine_bd_2 PF12893.7 CQR55240.1 - 0.002 18.8 0.0 0.0029 18.3 0.0 1.3 1 1 0 1 1 1 1 Putative lumazine-binding F5_F8_type_C PF00754.25 CQR55241.1 - 0.032 14.3 7.5 0.072 13.2 7.5 1.6 1 0 0 1 1 1 0 F5/8 type C domain CENP-Q PF13094.6 CQR55243.1 - 0.0068 16.6 6.1 0.0084 16.3 6.1 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit Spc7 PF08317.11 CQR55243.1 - 0.035 13.0 8.3 0.31 9.9 1.5 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Golgin_A5 PF09787.9 CQR55243.1 - 0.036 13.5 6.2 0.041 13.4 6.2 1.0 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF2730 PF10805.8 CQR55243.1 - 0.039 14.0 2.6 1.4 9.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DUF5082 PF16888.5 CQR55243.1 - 0.071 13.4 4.9 0.23 11.7 0.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) BRE1 PF08647.11 CQR55243.1 - 0.089 12.9 7.0 4.4 7.5 7.0 2.3 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase Cnn_1N PF07989.11 CQR55243.1 - 0.21 11.8 7.5 0.38 10.9 0.5 2.3 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 ABC_tran_CTD PF16326.5 CQR55243.1 - 0.34 11.2 6.8 22 5.4 0.3 2.5 1 1 1 2 2 2 0 ABC transporter C-terminal domain UPF0242 PF06785.11 CQR55243.1 - 0.36 10.9 8.4 4.8 7.2 8.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FlaC_arch PF05377.11 CQR55243.1 - 0.36 11.2 4.8 43 4.6 4.8 2.5 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DivIC PF04977.15 CQR55243.1 - 0.96 9.3 10.0 8.7 6.2 1.9 2.7 1 1 1 2 2 2 0 Septum formation initiator LPAM_1 PF08139.12 CQR55244.1 - 0.011 16.1 1.7 0.024 15.1 1.7 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site REF PF05755.12 CQR55245.1 - 0.00049 20.0 0.2 0.00055 19.8 0.2 1.0 1 0 0 1 1 1 1 Rubber elongation factor protein (REF) DUF1678 PF07913.11 CQR55245.1 - 0.014 15.1 0.1 0.016 15.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) NPV_P10 PF05531.12 CQR55245.1 - 0.14 12.7 3.1 2.3 8.7 0.0 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 CQR55246.1 - 0.00011 22.7 0.1 0.00013 22.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF16 T2SSM PF04612.12 CQR55246.1 - 0.025 14.7 0.0 0.028 14.5 0.0 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M XhlA PF10779.9 CQR55246.1 - 0.053 13.7 0.1 0.053 13.7 0.1 2.0 2 1 0 2 2 2 0 Haemolysin XhlA Peptidase_M15_4 PF13539.6 CQR55248.1 - 2.1e-20 73.0 1.6 4.7e-20 71.9 1.6 1.6 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase VanY PF02557.17 CQR55248.1 - 5.8e-11 42.3 0.0 1.2e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase CALCOCO1 PF07888.11 CQR55248.1 - 0.00077 18.5 0.4 0.001 18.0 0.4 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like GCN5L1 PF06320.13 CQR55248.1 - 0.0032 17.6 1.0 0.0061 16.7 1.0 1.4 1 0 0 1 1 1 1 GCN5-like protein 1 (GCN5L1) BLOC1_2 PF10046.9 CQR55248.1 - 0.0056 16.9 1.9 0.0099 16.2 1.1 1.9 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 CQR55248.1 - 0.01 14.8 0.1 0.015 14.2 0.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Kre28 PF17097.5 CQR55248.1 - 0.047 12.6 0.4 0.067 12.1 0.4 1.1 1 0 0 1 1 1 0 Spindle pole body component APG6_N PF17675.1 CQR55248.1 - 0.053 14.1 0.6 0.083 13.4 0.6 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region ZapB PF06005.12 CQR55248.1 - 0.054 13.9 1.4 0.12 12.9 1.4 1.7 1 1 0 1 1 1 0 Cell division protein ZapB TMF_DNA_bd PF12329.8 CQR55248.1 - 0.11 12.5 2.5 0.22 11.5 2.5 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding MbeD_MobD PF04899.12 CQR55248.1 - 0.11 12.6 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 MbeD/MobD like DUF948 PF06103.11 CQR55248.1 - 0.14 12.4 0.2 0.14 12.4 0.2 2.4 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.10 CQR55248.1 - 0.26 11.4 0.6 0.96 9.6 0.1 1.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family SlyX PF04102.12 CQR55248.1 - 0.35 11.5 2.2 1.7 9.3 2.2 2.2 1 1 0 1 1 1 0 SlyX DivIC PF04977.15 CQR55248.1 - 0.38 10.6 3.5 0.86 9.4 3.5 1.7 1 0 0 1 1 1 0 Septum formation initiator FlxA PF14282.6 CQR55248.1 - 0.57 10.2 3.4 1.2 9.2 3.4 1.5 1 0 0 1 1 1 0 FlxA-like protein SLATT_1 PF18181.1 CQR55249.1 - 0.15 12.0 0.8 0.18 11.8 0.8 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 UCR_Fe-S_N PF10399.9 CQR55249.1 - 7 6.1 8.8 4.8 6.6 1.0 2.3 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Acyl_transf_3 PF01757.22 CQR55250.1 - 0.0016 17.6 4.1 0.0018 17.4 4.1 1.1 1 0 0 1 1 1 1 Acyltransferase family YibE_F PF07907.11 CQR55250.1 - 0.034 13.6 8.1 0.036 13.6 8.1 1.1 1 0 0 1 1 1 0 YibE/F-like protein 7TM-7TMR_HD PF07698.11 CQR55250.1 - 1 9.1 12.6 1.9 8.2 12.4 1.5 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase OST3_OST6 PF04756.13 CQR55250.1 - 3.7 6.8 10.5 0.15 11.4 3.5 1.8 1 1 1 2 2 2 0 OST3 / OST6 family, transporter family DUF2985 PF11204.8 CQR55250.1 - 5.9 7.1 12.6 20 5.4 5.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) fn3 PF00041.21 CQR55255.1 - 1.3e-06 28.7 2.3 3.5e-06 27.3 2.3 1.8 1 0 0 1 1 1 1 Fibronectin type III domain Pur_ac_phosph_N PF16656.5 CQR55255.1 - 4.7e-06 27.1 10.6 1.8e-05 25.2 6.2 2.9 3 1 0 3 3 3 1 Purple acid Phosphatase, N-terminal domain Interfer-bind PF09294.10 CQR55255.1 - 0.015 15.6 0.2 0.034 14.5 0.2 1.6 1 0 0 1 1 1 0 Interferon-alpha/beta receptor, fibronectin type III F5_F8_type_C PF00754.25 CQR55255.1 - 0.26 11.4 0.1 0.26 11.4 0.1 2.6 1 1 0 2 2 2 0 F5/8 type C domain DEC-1_N PF04625.13 CQR55255.1 - 1.8 7.5 3.6 2.6 7.0 3.6 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region DUF3580 PF12117.8 CQR55256.1 - 0.078 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3580) DUF4452 PF14618.6 CQR55256.1 - 0.097 12.5 0.2 0.12 12.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4452) Rubrerythrin PF02915.17 CQR55259.1 - 1.4e-09 38.5 0.0 4.5e-08 33.6 0.0 2.1 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 CQR55259.1 - 0.03 14.5 0.0 0.037 14.2 0.0 1.2 1 0 0 1 1 1 0 Ferritin-like domain COQ7 PF03232.13 CQR55259.1 - 0.079 12.7 0.1 0.86 9.4 0.1 2.0 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Cupin_2 PF07883.11 CQR55260.1 - 1.4e-07 31.1 0.1 1.9e-07 30.7 0.1 1.1 1 0 0 1 1 1 1 Cupin domain DMSP_lyase PF16867.5 CQR55260.1 - 0.00025 20.7 0.1 0.00029 20.5 0.1 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 CQR55260.1 - 0.021 14.5 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_1 PF00190.22 CQR55260.1 - 0.15 11.6 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Cupin NUDIX PF00293.28 CQR55261.1 - 4.6e-20 72.0 0.0 5.9e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF1317 PF07026.11 CQR55261.1 - 0.04 13.7 0.1 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1317) Peptidase_M50 PF02163.22 CQR55262.1 - 3.7e-11 42.8 12.2 2.6e-06 26.9 0.6 2.9 2 1 1 3 3 3 2 Peptidase family M50 DUF4328 PF14219.6 CQR55262.1 - 0.046 13.3 0.3 0.046 13.3 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4328) DUF3267 PF11667.8 CQR55262.1 - 0.31 11.3 9.7 0.14 12.5 5.0 2.5 2 0 0 2 2 2 0 Putative zincin peptidase Acetyltransf_10 PF13673.7 CQR55264.1 - 1.2e-15 57.5 0.1 1.4e-15 57.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55264.1 - 6.6e-10 39.3 0.1 7.8e-10 39.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55264.1 - 1.9e-09 37.8 0.2 2.3e-09 37.6 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 CQR55264.1 - 0.00046 20.9 0.2 0.026 15.2 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 CQR55264.1 - 0.02 14.3 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 FR47 PF08445.10 CQR55264.1 - 0.022 14.7 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 CQR55264.1 - 0.047 13.8 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3892 PF13031.6 CQR55265.1 - 1.1e-16 61.1 0.0 1.3e-16 61.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3892) Lactamase_B PF00753.27 CQR55266.1 - 3.4e-10 40.2 0.0 5e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR55266.1 - 4.5e-10 39.4 0.1 5.4e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 CQR55266.1 - 0.0037 16.4 0.0 0.0047 16.1 0.0 1.1 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II Lactamase_B_6 PF16661.5 CQR55266.1 - 0.01 15.3 0.0 0.021 14.3 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain HTH_46 PF15977.5 CQR55266.1 - 0.023 14.7 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding FlgD_ig PF13860.6 CQR55267.1 - 0.059 13.3 3.2 0.13 12.2 0.1 2.7 3 0 0 3 3 3 0 FlgD Ig-like domain DUF1292 PF06949.11 CQR55268.1 - 2.3e-14 54.1 11.1 2.3e-14 54.1 11.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1292) OKR_DC_1 PF01276.20 CQR55269.1 - 2e-104 349.6 0.1 1.8e-103 346.5 0.1 2.0 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_1_2 PF00155.21 CQR55269.1 - 1.1e-12 47.8 0.1 5e-12 45.7 0.1 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR55269.1 - 6.8e-11 42.1 0.7 1.2e-10 41.3 0.7 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 CQR55269.1 - 2.1e-10 40.1 0.2 1.9e-09 37.0 0.1 2.0 2 0 0 2 2 2 1 Aminotransferase class-V OKR_DC_1_C PF03711.15 CQR55269.1 - 6e-08 33.1 0.1 1.2e-07 32.1 0.1 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain SepSecS PF05889.13 CQR55269.1 - 8.8e-06 24.6 0.0 1.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 CQR55269.1 - 1.1e-05 24.9 0.1 1.6e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 CQR55269.1 - 0.00031 19.4 0.3 0.00047 18.8 0.3 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 CQR55269.1 - 0.043 12.6 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein MFS_1 PF07690.16 CQR55270.1 - 1e-39 136.5 45.2 3.6e-20 72.2 20.2 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR55270.1 - 1.3e-08 34.2 25.8 2.7e-08 33.1 7.7 2.1 1 1 1 2 2 2 2 MFS_1 like family ATG22 PF11700.8 CQR55270.1 - 1e-06 27.7 4.9 1e-06 27.7 4.9 2.2 2 1 0 2 2 2 1 Vacuole effluxer Atg22 like UNC-93 PF05978.16 CQR55270.1 - 0.011 15.4 11.3 0.41 10.4 1.0 2.7 2 1 0 2 2 2 0 Ion channel regulatory protein UNC-93 LacY_symp PF01306.19 CQR55270.1 - 0.031 13.1 11.6 0.086 11.6 5.2 2.6 2 1 1 3 3 3 0 LacY proton/sugar symporter MFS_3 PF05977.13 CQR55270.1 - 0.12 10.7 22.0 0.48 8.8 21.9 2.1 1 1 0 1 1 1 0 Transmembrane secretion effector DUF1054 PF06335.12 CQR55271.1 - 4.1e-78 261.9 0.0 4.6e-78 261.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1054) DUF1090 PF06476.12 CQR55272.1 - 0.018 15.2 0.7 0.031 14.4 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) 6PGD PF00393.19 CQR55273.1 - 1.9e-135 450.9 0.0 2.6e-135 450.4 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 CQR55273.1 - 6.4e-54 182.4 0.0 9.6e-54 181.8 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR55273.1 - 0.00029 21.4 0.1 0.00067 20.2 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 CQR55273.1 - 0.00042 20.4 0.1 0.0011 19.1 0.1 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 CQR55273.1 - 0.0029 17.0 0.0 0.0057 16.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 CQR55273.1 - 0.0046 16.8 0.0 0.0091 15.9 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 CQR55273.1 - 0.012 15.8 0.0 0.064 13.5 0.0 2.2 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase STI1 PF17830.1 CQR55273.1 - 0.063 13.2 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 STI1 domain IlvN PF07991.12 CQR55273.1 - 0.088 12.4 0.1 0.42 10.2 0.0 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain SKI PF01202.22 CQR55274.1 - 3e-41 141.2 0.0 3.3e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 CQR55274.1 - 1e-06 29.3 0.0 3.9e-06 27.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR55274.1 - 2e-06 28.1 0.2 1.8e-05 24.9 0.2 2.0 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 CQR55274.1 - 4.1e-05 23.8 0.1 0.033 14.3 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase-like family CoaE PF01121.20 CQR55274.1 - 0.00048 19.9 0.0 0.00086 19.0 0.0 1.4 1 0 0 1 1 1 1 Dephospho-CoA kinase Cytidylate_kin PF02224.18 CQR55274.1 - 0.0011 18.7 0.2 0.1 12.3 0.0 2.4 2 1 0 2 2 2 1 Cytidylate kinase AAA_17 PF13207.6 CQR55274.1 - 0.0086 16.5 0.1 0.032 14.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 CQR55274.1 - 0.03 14.7 0.0 0.098 13.1 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rhodanese PF00581.20 CQR55275.1 - 1.7e-14 54.2 0.0 1.9e-14 54.1 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain EPSP_synthase PF00275.20 CQR55276.1 - 4e-87 292.6 0.1 4.5e-87 292.4 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TubC_N PF18563.1 CQR55276.1 - 0.037 14.0 0.0 10 6.2 0.0 3.3 3 1 1 4 4 4 0 TubC N-terminal docking domain Acetyltransf_1 PF00583.25 CQR55277.1 - 4.3e-13 49.5 0.0 5.5e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55277.1 - 4e-09 36.8 0.0 6.6e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR55277.1 - 2.7e-07 31.4 0.0 3.3e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR55277.1 - 4.1e-07 30.0 0.0 8.7e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR55277.1 - 1.4e-05 25.1 0.0 2.6e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55277.1 - 4.5e-05 23.3 0.0 8.5e-05 22.5 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein AstA PF04958.12 CQR55277.1 - 0.0084 14.7 0.0 0.046 12.3 0.0 1.8 2 0 0 2 2 2 1 Arginine N-succinyltransferase beta subunit Acetyltransf_CG PF14542.6 CQR55277.1 - 0.018 15.2 0.0 0.034 14.3 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 CQR55277.1 - 0.16 12.1 0.0 0.7 10.0 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Collagen PF01391.18 CQR55280.1 - 9.2e-08 31.7 32.6 1.1e-06 28.3 17.4 3.2 2 2 0 2 2 2 2 Collagen triple helix repeat (20 copies) GerA PF03323.13 CQR55281.1 - 6.8e-99 331.4 4.9 8e-99 331.2 4.9 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Spore_permease PF03845.13 CQR55282.1 - 5.4e-23 81.3 39.2 6.9e-23 81.0 39.2 1.1 1 0 0 1 1 1 1 Spore germination protein Spore_GerAC PF05504.11 CQR55283.1 - 8.6e-20 71.6 0.9 1.6e-19 70.7 0.9 1.4 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal CoA_binding_2 PF13380.6 CQR55284.1 - 2.3e-40 137.7 0.2 2.7e-40 137.5 0.2 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 CQR55284.1 - 0.0001 22.9 0.1 0.00042 20.9 0.0 1.8 1 1 0 2 2 2 1 CoA binding domain MTES_1575 PF18741.1 CQR55285.1 - 1.7e-06 28.1 0.0 3.4e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 REase_MTES_1575 Ribosomal_S25 PF03297.15 CQR55285.1 - 0.0011 19.1 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 S25 ribosomal protein DUF559 PF04480.12 CQR55285.1 - 0.0012 18.6 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF559) Penicillinase_R PF03965.16 CQR55285.1 - 0.0052 17.1 0.0 0.0081 16.5 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor RAP PF08373.10 CQR55285.1 - 0.017 15.2 0.1 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 RAP domain DUF2250 PF10007.9 CQR55285.1 - 0.077 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.10 CQR55285.1 - 0.086 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator PTS_EIIC PF02378.18 CQR55286.1 - 1.1e-53 182.3 28.8 1.9e-53 181.6 28.8 1.4 1 0 0 1 1 1 1 Phosphotransferase system, EIIC PTS_EIIA_1 PF00358.20 CQR55286.1 - 2.8e-42 143.5 0.0 5.2e-42 142.6 0.0 1.5 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIB PF00367.20 CQR55286.1 - 1.4e-12 46.9 0.1 2.5e-12 46.1 0.1 1.4 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl_2 PF13533.6 CQR55286.1 - 0.28 11.0 0.7 0.56 10.1 0.0 1.8 2 0 0 2 2 2 0 Biotin-lipoyl like FUSC-like PF12805.7 CQR55286.1 - 0.67 9.0 3.4 1.5 7.9 3.4 1.5 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS PEP-utilizers_C PF02896.18 CQR55287.1 - 1.9e-110 368.6 0.6 3.5e-110 367.7 0.6 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 CQR55287.1 - 2e-28 98.9 2.3 2.4e-28 98.6 0.0 2.3 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 CQR55287.1 - 2.8e-20 71.8 0.1 7.5e-20 70.4 0.1 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 CQR55287.1 - 1.7e-05 24.1 2.3 2e-05 23.8 0.4 2.0 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Sigma70_r4_2 PF08281.12 CQR55288.1 - 1.2e-13 50.4 0.0 2.3e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR55288.1 - 1.4e-13 50.4 0.1 3e-13 49.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR55288.1 - 1.6e-13 49.9 0.1 3.1e-13 49.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR55288.1 - 0.00063 19.5 0.1 0.0016 18.2 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 CQR55288.1 - 0.036 14.0 0.1 0.24 11.3 0.0 2.2 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 CQR55288.1 - 0.056 13.2 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4179 PF13786.6 CQR55289.1 - 9.1e-07 29.3 0.0 5.4e-06 26.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4179) DUF5643 PF18705.1 CQR55289.1 - 0.0015 18.5 1.3 0.033 14.1 0.3 2.6 2 0 0 2 2 2 1 Family of unknown function (DUF5643) Collagen_bind_2 PF12904.7 CQR55289.1 - 0.07 13.1 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Putative collagen-binding domain of a collagenase DJ-1_PfpI PF01965.24 CQR55290.1 - 5.6e-43 146.6 0.0 6.3e-43 146.4 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 CQR55290.1 - 0.17 11.5 0.0 0.59 9.8 0.0 1.7 1 1 0 1 1 1 0 ThiJ/PfpI family-like Peripla_BP_3 PF13377.6 CQR55292.1 - 8.6e-36 123.8 0.0 1.9e-35 122.6 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR55292.1 - 3.5e-30 105.4 0.1 4.3e-30 105.1 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR55292.1 - 2.9e-24 86.0 0.1 3.6e-24 85.7 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 CQR55292.1 - 7e-12 45.0 0.7 2e-11 43.5 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family PNP_UDP_1 PF01048.20 CQR55293.1 - 6.4e-58 195.8 3.7 7.2e-58 195.6 3.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Acetyltransf_1 PF00583.25 CQR55294.1 - 6.8e-05 23.1 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 CQR55294.1 - 0.055 13.6 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AMP-binding PF00501.28 CQR55295.1 - 2.2e-92 309.9 0.0 2.7e-92 309.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 CQR55295.1 - 1e-23 84.1 0.4 6.5e-23 81.5 0.3 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Transgly PF00912.22 CQR55296.1 - 1.9e-54 183.8 0.0 3.5e-54 182.9 0.0 1.5 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 CQR55296.1 - 1e-31 110.3 7.3 1.8e-31 109.5 7.3 1.4 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain DUF4959 PF16323.5 CQR55296.1 - 0.082 13.2 0.2 0.6 10.5 0.2 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4959) Ribosomal_S4 PF00163.19 CQR55297.1 - 8.6e-29 100.3 0.8 1.4e-28 99.6 0.8 1.3 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 CQR55297.1 - 1.2e-21 76.1 0.4 2.4e-21 75.2 0.4 1.5 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 CQR55297.1 - 0.04 13.7 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 S4 domain DUF348 PF03990.14 CQR55297.1 - 0.041 13.6 0.1 0.12 12.1 0.1 1.8 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain GGDEF PF00990.21 CQR55298.1 - 2.1e-38 131.6 0.1 5.2e-38 130.3 0.0 1.7 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain GAF_2 PF13185.6 CQR55298.1 - 1.2e-25 90.4 0.2 3.1e-17 63.1 0.0 3.5 3 0 0 3 3 3 2 GAF domain GAF PF01590.26 CQR55298.1 - 1.9e-20 73.8 0.0 2.1e-14 54.3 0.0 3.4 3 0 0 3 3 3 3 GAF domain GAF_3 PF13492.6 CQR55298.1 - 1.7e-16 60.8 0.0 3.8e-11 43.4 0.0 2.5 2 0 0 2 2 2 2 GAF domain Peptidase_M29 PF02073.15 CQR55300.1 - 1e-53 182.6 0.0 1.3e-53 182.3 0.0 1.1 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Ribosomal_S13 PF00416.22 CQR55300.1 - 0.14 12.6 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S13/S18 PTS-HPr PF00381.19 CQR55301.1 - 2e-07 31.2 0.3 2.8e-07 30.7 0.3 1.2 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PGA_cap PF09587.10 CQR55301.1 - 0.048 13.1 0.1 0.05 13.1 0.1 1.0 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap FliH PF02108.16 CQR55301.1 - 0.049 13.7 0.0 0.054 13.6 0.0 1.3 1 1 0 1 1 1 0 Flagellar assembly protein FliH DUF1507 PF07408.11 CQR55302.1 - 1.3e-36 124.3 0.3 1.6e-36 124.0 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1507) Tam41_Mmp37 PF09139.11 CQR55302.1 - 0.12 11.8 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Phosphatidate cytidylyltransferase, mitochondrial Na_Ca_ex PF01699.24 CQR55303.1 - 1.4e-29 103.0 44.9 1.1e-14 54.6 17.2 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF2583 PF10762.9 CQR55303.1 - 0.014 15.8 1.7 0.014 15.8 1.7 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) Abhydrolase_9_N PF15420.6 CQR55303.1 - 3.1 7.7 11.4 2.5 8.0 0.1 3.0 2 1 2 4 4 4 0 Alpha/beta-hydrolase family N-terminus Asp23 PF03780.13 CQR55304.1 - 7.4e-34 116.4 2.7 8.4e-34 116.2 2.7 1.0 1 0 0 1 1 1 1 Asp23 family, cell envelope-related function FTSW_RODA_SPOVE PF01098.19 CQR55305.1 - 7.9e-107 357.4 24.0 9.4e-107 357.1 24.0 1.0 1 0 0 1 1 1 1 Cell cycle protein YfhO PF09586.10 CQR55305.1 - 0.095 10.9 7.0 1.4 7.1 0.1 2.3 2 0 0 2 2 2 0 Bacterial membrane protein YfhO CAAD PF14159.6 CQR55305.1 - 0.25 11.2 0.1 0.25 11.2 0.1 3.6 4 0 0 4 4 4 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase YugN PF08868.10 CQR55306.1 - 5.5e-09 36.0 0.0 6.3e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 YugN-like family Peptidase_M20 PF01546.28 CQR55307.1 - 2.1e-30 106.0 0.9 2.6e-30 105.7 0.9 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR55307.1 - 2e-13 50.2 0.0 4.5e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain CBS PF00571.28 CQR55308.1 - 1.6e-25 89.3 5.5 6.8e-13 48.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain GAF PF01590.26 CQR55308.1 - 0.0046 17.6 0.0 0.0087 16.7 0.0 1.5 1 1 0 1 1 1 1 GAF domain ERCC3_RAD25_C PF16203.5 CQR55309.1 - 2.1e-46 158.2 0.0 2.8e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C_3 PF13625.6 CQR55309.1 - 1.4e-34 119.0 0.0 2.3e-34 118.3 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR55309.1 - 1.4e-12 47.9 0.0 2.6e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 CQR55309.1 - 7.3e-09 36.0 0.0 1.4e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 CQR55309.1 - 0.0064 15.3 0.0 0.0096 14.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Glycos_transf_1 PF00534.20 CQR55309.1 - 0.19 11.3 0.3 7.7 6.0 0.1 2.2 2 0 0 2 2 2 0 Glycosyl transferases group 1 Helicase_C_3 PF13625.6 CQR55310.1 - 2.3e-15 56.9 0.0 4.7e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Glyoxalase_3 PF13468.6 CQR55310.1 - 0.05 13.7 0.0 0.3 11.2 0.0 2.2 2 0 0 2 2 2 0 Glyoxalase-like domain Com_YlbF PF06133.11 CQR55311.1 - 1.3e-21 77.2 0.2 1.5e-21 77.0 0.2 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA Isy1 PF06246.12 CQR55311.1 - 0.032 13.8 0.1 0.033 13.7 0.1 1.0 1 0 0 1 1 1 0 Isy1-like splicing family YwqJ-deaminase PF14431.6 CQR55311.1 - 0.052 13.7 0.1 0.063 13.5 0.1 1.2 1 0 0 1 1 1 0 YwqJ-like deaminase DUF2524 PF10732.9 CQR55311.1 - 0.11 12.8 0.8 0.21 11.9 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2524) DUF2129 PF09902.9 CQR55312.1 - 1.7e-28 98.4 5.3 2e-28 98.2 5.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2129) CHIPS PF11434.8 CQR55312.1 - 0.0021 17.8 0.8 0.0023 17.7 0.8 1.1 1 0 0 1 1 1 1 Chemotaxis-inhibiting protein CHIPS PI3K_p85B PF02192.16 CQR55312.1 - 0.11 12.3 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 PI3-kinase family, p85-binding domain RVT_1 PF00078.27 CQR55313.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR55313.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR55313.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase Acetyltransf_3 PF13302.7 CQR55314.1 - 3.1e-10 40.9 0.0 4.8e-10 40.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55314.1 - 4.5e-07 30.1 0.2 1.8e-06 28.2 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55314.1 - 0.0046 17.3 0.0 0.0088 16.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR55314.1 - 0.053 13.4 0.1 0.11 12.4 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain EAL PF00563.20 CQR55315.1 - 1.3e-43 149.2 0.0 1.6e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR55316.1 - 2e-18 66.7 0.1 7.8e-18 64.7 0.0 1.9 1 1 1 2 2 2 1 Diguanylate cyclase, GGDEF domain LysR_substrate PF03466.20 CQR55318.1 - 7.8e-48 162.6 0.1 1.1e-47 162.1 0.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR55318.1 - 5.9e-21 74.2 0.0 1.7e-20 72.7 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 CQR55318.1 - 1.8e-09 37.0 0.0 2.7e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.7 CQR55318.1 - 0.00016 21.5 0.0 0.00034 20.4 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain MarR_2 PF12802.7 CQR55318.1 - 0.058 13.3 0.0 0.39 10.6 0.0 2.3 2 0 0 2 2 2 0 MarR family Acetyltransf_3 PF13302.7 CQR55319.1 - 1.2e-14 55.2 0.1 2.6e-14 54.1 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PHP PF02811.19 CQR55319.1 - 6e-10 39.7 0.1 8.9e-10 39.1 0.1 1.4 1 1 0 1 1 1 1 PHP domain Acetyltransf_8 PF13523.6 CQR55319.1 - 0.046 13.4 0.0 0.14 11.8 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PHP_C PF13263.6 CQR55319.1 - 0.11 12.3 0.3 1.1 9.1 0.0 2.6 2 0 0 2 2 2 0 PHP-associated Ery_res_leader1 PF08051.11 CQR55320.1 - 1.7e-05 24.0 0.8 89 3.8 0.0 5.9 6 0 0 6 6 6 3 Erythromycin resistance leader peptide DUF4907 PF16250.5 CQR55320.1 - 1.3 9.0 5.2 30 4.6 0.1 4.0 1 1 4 5 5 5 0 Domain of unknown function (DUF4907) DEDD_Tnp_IS110 PF01548.17 CQR55321.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR55321.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR55321.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR55321.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DSX_dimer PF08828.10 CQR55322.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR55322.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain FbpA PF05833.11 CQR55323.1 - 5.6e-139 463.8 0.0 2.1e-68 231.2 0.0 2.2 2 0 0 2 2 2 2 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 CQR55323.1 - 1.4e-11 45.0 0.0 3.4e-11 43.7 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 CQR55323.1 - 4e-07 30.2 0.0 8.9e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain Glycoprot_B_PH1 PF17416.2 CQR55323.1 - 0.11 12.1 0.1 0.2 11.3 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B Ada3 PF10198.9 CQR55323.1 - 1.2 9.3 4.3 0.26 11.4 0.3 1.8 2 0 0 2 2 2 0 Histone acetyltransferases subunit 3 E1-E2_ATPase PF00122.20 CQR55324.1 - 4.7e-56 189.2 0.9 4.7e-56 189.2 0.9 3.0 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 CQR55324.1 - 2.4e-54 183.8 2.3 5.1e-54 182.7 2.3 1.5 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 CQR55324.1 - 1e-24 88.0 1.7 6e-24 85.5 1.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 CQR55324.1 - 4.3e-18 65.2 0.0 8.2e-18 64.3 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 CQR55324.1 - 1.5e-17 63.1 0.0 3.4e-17 61.9 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.7 CQR55324.1 - 0.00068 20.1 0.1 0.0016 18.9 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR55324.1 - 0.026 14.3 0.9 0.047 13.4 0.2 1.7 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DAP_epimerase PF01678.19 CQR55325.1 - 5.5e-57 191.2 0.2 1.1e-27 96.6 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 CQR55325.1 - 0.01 15.3 0.0 0.014 14.9 0.0 1.4 1 1 0 1 1 1 0 Phenazine biosynthesis-like protein SBP_bac_1 PF01547.25 CQR55326.1 - 7.4e-30 105.0 4.8 1e-29 104.5 4.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR55326.1 - 9.3e-30 104.4 7.6 1.2e-29 104.0 7.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR55326.1 - 3.7e-06 26.5 2.6 0.023 14.1 0.5 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein MCPsignal PF00015.21 CQR55327.1 - 2.1e-39 135.1 49.8 6.2e-39 133.6 22.7 4.6 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR55327.1 - 1e-15 57.8 0.9 3.4e-15 56.2 0.1 2.5 2 0 0 2 2 2 1 HAMP domain 4HB_MCP_1 PF12729.7 CQR55327.1 - 5.4e-14 52.1 4.0 5.4e-14 52.1 4.0 4.1 3 1 1 4 4 4 1 Four helix bundle sensory module for signal transduction CHASE3 PF05227.13 CQR55327.1 - 3.8e-05 23.6 0.4 3.8e-05 23.6 0.4 3.8 3 3 1 4 4 4 1 CHASE3 domain DUF948 PF06103.11 CQR55327.1 - 3.9e-05 23.8 21.6 0.0022 18.2 0.3 5.0 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 CQR55327.1 - 0.045 12.6 16.1 0.12 11.2 1.9 3.4 2 1 1 3 3 3 0 Spc7 kinetochore protein DUF3606 PF12244.8 CQR55327.1 - 0.1 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) Med30 PF11315.8 CQR55327.1 - 0.15 12.3 5.1 1.4 9.2 0.0 3.5 3 1 0 4 4 4 0 Mediator complex subunit 30 T3SchapCesA PF11439.8 CQR55327.1 - 4.7 7.4 13.1 9.7 6.4 0.7 4.7 4 1 0 4 4 4 0 Type III secretion system filament chaperone CesA Sec34 PF04136.15 CQR55327.1 - 5.3 6.9 17.2 9.2 6.1 0.3 4.8 3 2 1 5 5 5 0 Sec34-like family GerA PF03323.13 CQR55328.1 - 1.6e-181 603.9 2.9 1.8e-181 603.7 2.9 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Spore_GerAC PF05504.11 CQR55329.1 - 1e-28 100.6 0.1 1.5e-28 100.1 0.1 1.3 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal Spore_permease PF03845.13 CQR55330.1 - 4.8e-66 222.8 28.3 6.9e-66 222.3 28.3 1.2 1 0 0 1 1 1 1 Spore germination protein SecE PF00584.20 CQR55331.1 - 0.021 14.8 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex S-methyl_trans PF02574.16 CQR55332.1 - 2.8e-54 184.7 0.0 4.7e-54 184.0 0.0 1.4 1 0 0 1 1 1 1 Homocysteine S-methyltransferase MTHFR PF02219.17 CQR55332.1 - 1.2e-24 87.1 0.0 1.9e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase PEP_mutase PF13714.6 CQR55332.1 - 0.0099 15.3 0.1 0.16 11.4 0.0 2.7 3 0 0 3 3 3 1 Phosphoenolpyruvate phosphomutase YicC_N PF03755.13 CQR55333.1 - 1.3e-37 129.6 0.1 2.2e-37 128.8 0.1 1.4 1 0 0 1 1 1 1 YicC-like family, N-terminal region DUF1732 PF08340.11 CQR55333.1 - 3.2e-34 116.8 0.6 7.2e-34 115.6 0.6 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1732) Synaptonemal_3 PF15191.6 CQR55333.1 - 0.046 13.5 0.9 0.85 9.4 0.1 2.8 1 1 1 2 2 2 0 Synaptonemal complex central element protein 3 DUF370 PF04025.12 CQR55334.1 - 2e-37 127.1 1.1 2.2e-37 127.0 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF370) RII_binding_1 PF10522.9 CQR55334.1 - 0.15 12.3 1.7 31 5.2 0.1 3.9 4 0 0 4 4 4 0 RII binding domain Guanylate_kin PF00625.21 CQR55335.1 - 4.7e-47 160.0 0.0 5.5e-47 159.8 0.0 1.0 1 0 0 1 1 1 1 Guanylate kinase AAA_18 PF13238.6 CQR55335.1 - 9.2e-08 32.7 0.0 1.3e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR55335.1 - 0.0017 18.3 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR55335.1 - 0.0038 17.6 0.0 0.0045 17.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 CQR55335.1 - 0.013 15.7 0.0 0.084 13.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 CQR55335.1 - 0.013 15.9 0.0 0.033 14.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 CQR55335.1 - 0.032 14.1 0.0 0.093 12.6 0.0 1.8 1 1 0 1 1 1 0 Deoxynucleoside kinase AAA PF00004.29 CQR55335.1 - 0.11 12.9 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 CQR55335.1 - 0.17 11.8 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 CQR55335.1 - 0.18 11.9 0.0 0.46 10.6 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 CQR55335.1 - 0.21 12.1 0.0 0.24 11.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter RNA_pol_Rpb6 PF01192.22 CQR55336.1 - 2.6e-13 49.7 0.1 2.9e-13 49.5 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 DFP PF04127.15 CQR55337.1 - 1.6e-71 240.0 3.6 2.4e-70 236.2 0.4 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 CQR55337.1 - 4.3e-48 163.0 0.5 7.5e-48 162.3 0.5 1.4 1 0 0 1 1 1 1 Flavoprotein F420_oxidored PF03807.17 CQR55337.1 - 0.0025 18.4 0.3 2.3 8.9 0.1 3.0 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 CQR55337.1 - 0.0062 16.5 1.2 0.013 15.4 0.3 2.2 2 1 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 CQR55337.1 - 0.018 14.5 0.8 0.72 9.3 0.1 2.9 2 1 0 2 2 2 0 short chain dehydrogenase Epimerase PF01370.21 CQR55337.1 - 0.019 14.4 0.1 5.2 6.4 0.0 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.6 CQR55337.1 - 0.036 13.6 2.2 0.062 12.9 0.5 2.1 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Glyco_trans_4_4 PF13579.6 CQR55337.1 - 0.17 12.3 1.6 1.1 9.6 0.1 2.6 2 1 0 3 3 3 0 Glycosyl transferase 4-like domain PriA_3primeBD PF17764.1 CQR55338.1 - 2e-26 91.7 0.0 4.6e-26 90.5 0.0 1.7 1 0 0 1 1 1 1 3′ DNA-binding domain (3′BD) ResIII PF04851.15 CQR55338.1 - 3.8e-15 56.3 0.0 8e-15 55.3 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PriA_C PF18074.1 CQR55338.1 - 1.8e-14 54.3 0.0 8e-14 52.2 0.0 2.2 2 0 0 2 2 1 1 Primosomal protein N C-terminal domain Helicase_C PF00271.31 CQR55338.1 - 4.7e-14 52.7 0.0 6.3e-10 39.4 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 CQR55338.1 - 2.6e-13 50.1 0.0 6.3e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase PriA_CRR PF18319.1 CQR55338.1 - 8.4e-12 44.9 6.2 8.4e-12 44.9 6.2 2.4 2 0 0 2 2 2 1 PriA DNA helicase Cys-rich region (CRR) domain PIF1 PF05970.14 CQR55338.1 - 3.1e-05 23.3 0.0 4.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase zinc-ribbons_6 PF07191.12 CQR55338.1 - 0.0027 17.7 1.4 0.006 16.5 1.4 1.6 1 0 0 1 1 1 1 zinc-ribbons Flavi_DEAD PF07652.14 CQR55338.1 - 0.004 17.1 0.0 0.015 15.2 0.0 1.9 1 1 0 1 1 1 1 Flavivirus DEAD domain Zn_ribbon_SprT PF17283.2 CQR55338.1 - 0.0097 15.8 3.1 0.0097 15.8 3.1 2.8 3 0 0 3 3 2 1 SprT-like zinc ribbon domain Helicase_C_2 PF13307.6 CQR55338.1 - 0.013 15.7 0.2 0.18 12.0 0.0 2.4 1 1 1 2 2 2 0 Helicase C-terminal domain AAA_16 PF13191.6 CQR55338.1 - 0.039 14.3 0.1 0.29 11.5 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.6 CQR55338.1 - 0.044 14.1 0.0 0.16 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 CQR55338.1 - 0.066 12.1 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 CQR55338.1 - 0.069 12.4 0.0 0.096 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.9 CQR55338.1 - 0.08 12.1 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 LexA_DNA_bind PF01726.16 CQR55338.1 - 0.16 11.7 0.2 6.4 6.6 0.0 2.9 2 1 0 2 2 2 0 LexA DNA binding domain Glyco_hydro_61 PF03443.14 CQR55338.1 - 0.22 11.4 0.1 0.44 10.5 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 61 HypA PF01155.19 CQR55338.1 - 1.1 9.3 6.6 0.61 10.1 2.9 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 CQR55338.1 - 1.2 9.8 0.0 1.2 9.8 0.0 3.2 4 1 0 4 4 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.13 CQR55338.1 - 2.3 8.0 9.7 0.31 10.7 1.0 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 CQR55338.1 - 2.8 8.0 9.3 23 5.1 9.6 2.1 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 CQR55338.1 - 8.4 6.0 9.5 13 5.4 0.1 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 CQR55338.1 - 9 6.3 8.3 5.7 6.9 0.0 3.4 3 1 1 4 4 3 0 RNA polymerases M/15 Kd subunit Pep_deformylase PF01327.21 CQR55339.1 - 9.5e-50 168.3 0.0 1.1e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase DUF948 PF06103.11 CQR55339.1 - 0.078 13.3 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Formyl_trans_N PF00551.19 CQR55340.1 - 8.3e-43 146.2 0.0 1.1e-42 145.8 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 CQR55340.1 - 4.4e-27 94.2 0.0 6.8e-27 93.6 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain Glyco_trans_4_4 PF13579.6 CQR55340.1 - 0.068 13.6 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain ProQ_C PF17516.2 CQR55340.1 - 0.13 11.7 0.1 0.13 11.7 0.1 1.9 2 0 0 2 2 2 0 ProQ C-terminal domain Methyltr_RsmB-F PF01189.17 CQR55341.1 - 3.4e-59 199.8 0.0 4.7e-59 199.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 CQR55341.1 - 1.9e-33 115.6 0.0 2.9e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 NusB family Methyltransf_31 PF13847.6 CQR55341.1 - 1.2e-07 31.6 0.0 2.2e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 CQR55341.1 - 8e-07 29.3 0.0 1.6e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 CQR55341.1 - 0.00026 21.4 0.0 0.00057 20.3 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_11 PF08241.12 CQR55341.1 - 0.0031 18.1 0.0 0.099 13.3 0.0 3.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR55341.1 - 0.0035 18.0 0.0 0.37 11.5 0.0 2.8 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR55341.1 - 0.018 14.9 0.0 0.72 9.7 0.0 2.8 2 1 0 2 2 2 0 Methyltransferase domain Asparaginase_C PF17763.1 CQR55341.1 - 0.12 12.6 0.0 1.3 9.3 0.0 2.4 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain DUF2431 PF10354.9 CQR55341.1 - 0.24 11.7 0.0 0.47 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Ubie_methyltran PF01209.18 CQR55341.1 - 0.26 10.6 0.0 8.8 5.6 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Radical_SAM PF04055.21 CQR55342.1 - 2.2e-19 70.5 0.0 4.3e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 CQR55342.1 - 2e-06 27.9 0.0 4e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 CQR55342.1 - 0.0075 16.5 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PP2C_2 PF13672.6 CQR55343.1 - 7.6e-20 71.4 0.1 1.1e-19 70.9 0.1 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 CQR55343.1 - 1.5e-12 47.7 0.0 1.1e-09 38.3 0.0 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 CQR55343.1 - 8.2e-07 29.1 2.1 2.3e-05 24.4 2.1 2.1 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.25 CQR55344.1 - 1.1e-56 192.1 0.0 1.7e-56 191.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 CQR55344.1 - 2.7e-41 141.6 0.0 3.6e-41 141.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase PASTA PF03793.19 CQR55344.1 - 6.5e-33 112.4 7.9 1.1e-11 44.4 0.3 4.0 4 0 0 4 4 4 3 PASTA domain APH PF01636.23 CQR55344.1 - 9.4e-08 32.3 1.4 0.0011 18.9 0.5 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kinase-like PF14531.6 CQR55344.1 - 0.00017 21.1 0.0 0.0003 20.2 0.0 1.4 1 0 0 1 1 1 1 Kinase-like RIO1 PF01163.22 CQR55344.1 - 0.0012 18.5 0.3 0.0025 17.5 0.3 1.6 1 0 0 1 1 1 1 RIO1 family Haspin_kinase PF12330.8 CQR55344.1 - 0.0018 17.3 0.0 0.0027 16.7 0.0 1.2 1 0 0 1 1 1 1 Haspin like kinase domain Kdo PF06293.14 CQR55344.1 - 0.0043 16.4 0.3 0.0071 15.7 0.3 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family FTA2 PF13095.6 CQR55344.1 - 0.02 14.5 0.1 0.037 13.6 0.1 1.5 1 0 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 COX15-CtaA PF02628.15 CQR55344.1 - 0.03 13.4 0.1 6.5 5.7 0.0 2.1 2 0 0 2 2 2 0 Cytochrome oxidase assembly protein Pkinase_fungal PF17667.1 CQR55344.1 - 0.061 12.1 0.2 0.51 9.1 0.1 2.0 2 0 0 2 2 2 0 Fungal protein kinase YrbL-PhoP_reg PF10707.9 CQR55344.1 - 0.12 11.9 0.1 0.28 10.7 0.1 1.6 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL Fructosamin_kin PF03881.14 CQR55344.1 - 0.22 10.7 0.0 0.39 9.9 0.0 1.4 1 0 0 1 1 1 0 Fructosamine kinase RsgA_GTPase PF03193.16 CQR55345.1 - 5.2e-58 195.6 0.0 6.6e-58 195.3 0.0 1.1 1 0 0 1 1 1 1 RsgA GTPase RsgA_N PF16745.5 CQR55345.1 - 6.7e-20 70.6 0.1 1.4e-19 69.6 0.1 1.5 1 0 0 1 1 1 1 RsgA N-terminal domain MMR_HSR1 PF01926.23 CQR55345.1 - 1e-05 25.5 0.0 2.4e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR55345.1 - 5e-05 22.9 0.2 0.0098 15.4 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B Ras PF00071.22 CQR55345.1 - 0.0039 16.8 0.1 1.3 8.6 0.0 2.2 1 1 1 2 2 2 2 Ras family AAA_29 PF13555.6 CQR55345.1 - 0.0068 16.1 0.2 0.014 15.1 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 CQR55345.1 - 0.015 15.8 0.2 0.028 14.9 0.2 1.4 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 CQR55345.1 - 0.037 14.1 0.2 2.1 8.4 0.0 2.3 1 1 1 2 2 2 0 AAA domain cobW PF02492.19 CQR55345.1 - 0.037 13.6 0.6 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 CQR55345.1 - 0.084 12.8 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 CQR55345.1 - 0.085 13.1 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR55345.1 - 0.14 12.5 0.3 0.3 11.4 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.9 CQR55345.1 - 0.16 11.7 0.1 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ParA PF10609.9 CQR55345.1 - 0.22 11.0 0.5 0.46 9.9 0.2 1.7 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase Ribul_P_3_epim PF00834.19 CQR55346.1 - 2.2e-84 281.8 0.3 2.6e-84 281.6 0.3 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.17 CQR55346.1 - 0.00038 20.0 1.2 0.08 12.4 0.3 2.1 1 1 1 2 2 2 2 PcrB family Ribosomal_L28 PF00830.19 CQR55347.1 - 3.8e-21 75.0 5.2 4.1e-21 74.9 5.2 1.0 1 0 0 1 1 1 1 Ribosomal L28 family Dak1_2 PF13684.6 CQR55348.1 - 9.5e-113 376.4 0.3 1.5e-112 375.7 0.3 1.3 1 0 0 1 1 1 1 Dihydroxyacetone kinase family Dak2 PF02734.17 CQR55348.1 - 8.1e-41 139.8 0.6 8.1e-41 139.8 0.6 2.6 3 0 0 3 3 3 2 DAK2 domain BcrAD_BadFG PF01869.20 CQR55348.1 - 0.0077 15.8 1.1 1.4 8.3 0.2 2.7 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DegV PF02645.16 CQR55349.1 - 1.7e-91 306.5 0.0 1.9e-91 306.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein, DegV family COG1307 Dak1_2 PF13684.6 CQR55349.1 - 0.00024 20.3 0.0 0.00028 20.1 0.0 1.1 1 0 0 1 1 1 1 Dihydroxyacetone kinase family Helicase_C PF00271.31 CQR55350.1 - 4.8e-23 81.6 0.0 2.4e-19 69.7 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain RecG_wedge PF17191.4 CQR55350.1 - 4.2e-17 62.2 0.1 1.1e-16 60.8 0.1 1.8 2 0 0 2 2 2 1 RecG wedge domain DEAD PF00270.29 CQR55350.1 - 6.1e-17 61.9 0.0 1.3e-16 60.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 CQR55350.1 - 3.8e-07 30.3 0.0 9.3e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 CQR55350.1 - 0.0026 17.1 0.0 0.0044 16.4 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain DUF5640 PF18692.1 CQR55350.1 - 0.064 13.3 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5640) ERCC3_RAD25_C PF16203.5 CQR55350.1 - 0.089 12.0 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase SpoVIF PF14069.6 CQR55351.1 - 3e-20 71.8 4.2 3.4e-20 71.6 4.2 1.0 1 0 0 1 1 1 1 Stage VI sporulation protein F Tagatose_6_P_K PF08013.11 CQR55351.1 - 0.0046 15.7 0.1 0.0052 15.5 0.1 1.0 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase SRI PF08236.11 CQR55351.1 - 0.068 13.4 0.1 0.085 13.0 0.1 1.1 1 0 0 1 1 1 0 SRI (Set2 Rpb1 interacting) domain DUF1002 PF06207.11 CQR55351.1 - 0.086 12.4 1.1 0.1 12.1 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) DUF2624 PF11116.8 CQR55351.1 - 0.18 12.7 2.5 1.1 10.1 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2624) TetR_N PF00440.23 CQR55352.1 - 2e-05 24.3 0.0 3.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family PAF-AH_p_II PF03403.13 CQR55353.1 - 1.2e-14 53.6 0.1 1.3e-08 33.8 0.0 2.1 2 0 0 2 2 2 2 Platelet-activating factor acetylhydrolase, isoform II Peptidase_S9 PF00326.21 CQR55353.1 - 0.00039 20.0 0.0 0.00065 19.2 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Chlorophyllase2 PF12740.7 CQR55353.1 - 0.0028 16.6 0.0 0.018 13.9 0.0 2.1 1 1 0 1 1 1 1 Chlorophyllase enzyme DUF2554 PF10829.8 CQR55353.1 - 0.11 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2554) YitT_membrane PF02588.15 CQR55354.1 - 1.7e-42 145.1 2.4 2.1e-42 144.9 2.4 1.1 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2179 PF10035.9 CQR55354.1 - 0.072 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) Na_H_Exchanger PF00999.21 CQR55355.1 - 5.8e-58 196.5 52.3 7.6e-58 196.1 52.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 CQR55356.1 - 8.4e-10 38.3 0.1 6.5e-08 32.3 0.0 2.5 2 1 1 3 3 3 2 TrkA-C domain E1-E2_ATPase PF00122.20 CQR55359.1 - 3.5e-11 43.0 1.6 4.5e-11 42.6 1.6 1.2 1 0 0 1 1 1 1 E1-E2 ATPase DUF3708 PF12501.8 CQR55359.1 - 0.056 13.2 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphate ATP-binding cassette transporter NLPC_P60 PF00877.19 CQR55360.1 - 5.2e-25 87.5 0.0 1e-24 86.6 0.0 1.5 1 0 0 1 1 1 1 NlpC/P60 family Cu_amine_oxidN1 PF07833.11 CQR55360.1 - 1.9e-07 31.4 0.0 3.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain Peptidase_C92 PF05708.12 CQR55360.1 - 5.3e-05 23.4 0.0 0.022 14.9 0.0 2.3 2 0 0 2 2 2 2 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Amidase_5 PF05382.13 CQR55360.1 - 0.0019 18.1 0.0 0.0046 16.9 0.0 1.6 1 0 0 1 1 1 1 Bacteriophage peptidoglycan hydrolase CHAP PF05257.16 CQR55360.1 - 0.085 13.4 0.0 0.63 10.6 0.0 2.1 2 0 0 2 2 2 0 CHAP domain ABC_sub_bind PF04392.12 CQR55361.1 - 5.5e-84 281.9 11.0 6.7e-84 281.6 11.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_4 PF13407.6 CQR55361.1 - 3.2e-11 43.3 12.2 4.2e-09 36.4 4.0 2.3 1 1 1 2 2 2 2 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR55361.1 - 0.00023 20.7 0.8 0.037 13.5 0.1 2.6 2 1 0 2 2 2 2 Periplasmic binding proteins and sugar binding domain of LacI family BPD_transp_2 PF02653.16 CQR55362.1 - 2.6e-30 105.5 36.7 3.4e-30 105.1 36.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF5518 PF17647.1 CQR55362.1 - 0.014 15.5 7.6 0.014 15.5 7.6 3.4 2 2 1 3 3 3 0 Family of unknown function (DUF5518) DUF3792 PF12670.7 CQR55362.1 - 8.3 6.6 32.0 0.18 12.0 6.2 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF3792) ABC_tran PF00005.27 CQR55363.1 - 2.6e-27 96.0 0.0 4.1e-27 95.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55363.1 - 6.5e-09 36.0 2.3 0.0014 18.5 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR55363.1 - 2.2e-08 33.8 0.3 8.3e-08 31.9 0.3 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR55363.1 - 0.00058 19.6 1.6 0.00078 19.1 0.3 1.9 2 1 0 2 2 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR55363.1 - 0.00062 19.7 0.1 0.0013 18.7 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase MukB PF04310.12 CQR55363.1 - 0.0007 19.5 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 MukB N-terminal MMR_HSR1 PF01926.23 CQR55363.1 - 0.012 15.7 0.2 0.055 13.5 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 CQR55363.1 - 0.029 14.6 0.1 0.43 10.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 CQR55363.1 - 0.03 14.8 0.0 0.053 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR55363.1 - 0.033 13.9 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 CQR55363.1 - 0.036 13.8 0.3 0.078 12.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 CQR55363.1 - 0.04 13.5 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 CQR55363.1 - 0.055 12.3 1.1 4.3 6.0 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 CQR55363.1 - 0.07 12.4 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 CQR55363.1 - 0.095 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 CQR55363.1 - 0.1 12.9 0.7 2.7 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 CQR55363.1 - 0.19 11.8 0.3 0.35 10.9 0.3 1.4 1 0 0 1 1 1 0 Dynamin family His_kinase PF06580.13 CQR55364.1 - 1.4e-25 89.4 1.2 3e-25 88.3 0.3 2.1 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR55364.1 - 8.5e-11 42.1 0.5 8.5e-11 42.1 0.5 1.9 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR55364.1 - 2.7e-10 40.5 0.8 6.6e-10 39.2 0.8 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR55364.1 - 3.3e-10 40.5 0.1 1e-09 38.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GvpK PF05121.12 CQR55364.1 - 0.065 13.3 3.8 0.36 10.9 0.6 2.8 2 0 0 2 2 2 0 Gas vesicle protein K DUF772 PF05598.11 CQR55364.1 - 0.067 13.2 0.1 0.2 11.7 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) Response_reg PF00072.24 CQR55365.1 - 6.1e-24 84.4 0.0 1.1e-23 83.6 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR55365.1 - 6.5e-13 48.4 0.0 5.1e-06 26.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR55365.1 - 8.2e-13 48.4 0.0 2e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain SBP_bac_8 PF13416.6 CQR55366.1 - 1.4e-29 103.8 10.1 2.3e-29 103.1 10.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR55366.1 - 8.4e-25 88.4 13.4 1.3e-24 87.8 13.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR55366.1 - 5.6e-06 25.9 0.3 0.031 13.7 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR55367.1 - 2.8e-09 37.0 26.9 2.8e-09 37.0 26.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR55368.1 - 8e-14 51.8 23.2 8.2e-13 48.5 23.2 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MscS_TM PF12794.7 CQR55368.1 - 0.13 11.1 0.1 0.13 11.1 0.1 2.5 3 0 0 3 3 3 0 Mechanosensitive ion channel inner membrane domain 1 adh_short_C2 PF13561.6 CQR55369.1 - 8.8e-61 205.4 0.3 1.2e-60 205.0 0.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR55369.1 - 1.9e-53 180.9 3.0 2.2e-53 180.6 3.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR55369.1 - 4.1e-12 46.4 0.7 5.8e-12 45.9 0.7 1.1 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 CQR55369.1 - 0.0016 17.5 0.1 0.0023 17.0 0.1 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1776 PF08643.10 CQR55369.1 - 0.0036 16.7 0.0 0.0048 16.3 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 CQR55369.1 - 0.015 14.7 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR55369.1 - 0.02 14.8 1.0 0.023 14.6 1.0 1.3 1 1 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 CQR55369.1 - 0.028 14.3 1.7 0.049 13.5 1.6 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 CQR55369.1 - 0.075 13.1 1.4 0.98 9.5 0.5 2.2 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Endostatin PF06482.11 CQR55369.1 - 0.088 12.3 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Collagenase NC10 and Endostatin MgtC PF02308.16 CQR55370.1 - 2.4e-35 121.5 4.8 3e-35 121.2 4.8 1.1 1 0 0 1 1 1 1 MgtC family PRO8NT PF08082.11 CQR55370.1 - 0.037 13.9 0.4 0.051 13.5 0.4 1.2 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain PrgI PF12666.7 CQR55370.1 - 0.074 13.8 0.7 0.59 10.9 0.1 2.2 2 0 0 2 2 2 0 PrgI family protein DUF4364 PF14277.6 CQR55370.1 - 0.086 12.6 0.9 0.13 12.0 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Aldose_epim PF01263.20 CQR55371.1 - 2.3e-34 119.1 0.0 2.8e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 Aldose 1-epimerase DUF4432 PF14486.6 CQR55371.1 - 0.075 11.8 0.0 0.14 10.9 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4432) Sulfatase PF00884.23 CQR55372.1 - 7.9e-28 97.7 0.0 1.3e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 Sulfatase DUF2568 PF10823.8 CQR55372.1 - 0.00053 20.2 2.7 0.0013 19.0 2.7 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2568) Wzy_C PF04932.15 CQR55372.1 - 0.03 13.9 3.7 0.066 12.8 0.1 2.3 2 0 0 2 2 2 0 O-Antigen ligase DUF5134 PF17197.4 CQR55372.1 - 0.45 10.4 3.8 0.88 9.5 3.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5134) Peripla_BP_4 PF13407.6 CQR55373.1 - 2.5e-60 204.2 1.0 3.5e-60 203.8 1.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR55373.1 - 1.6e-12 47.4 0.1 2.1e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ANF_receptor PF01094.28 CQR55373.1 - 0.00027 20.2 0.0 0.00034 19.8 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 CQR55373.1 - 0.013 15.2 1.2 0.028 14.1 0.3 1.8 1 1 0 2 2 2 0 Periplasmic binding protein dCache_1 PF02743.18 CQR55374.1 - 3.9e-28 98.9 0.0 6e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Cache domain His_kinase PF06580.13 CQR55374.1 - 1.6e-24 86.0 0.3 4e-24 84.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR55374.1 - 2.1e-10 40.8 0.0 6.7e-10 39.2 0.0 2.0 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR55374.1 - 2.3e-10 41.0 0.0 4.8e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3-Cache_2 PF17201.4 CQR55374.1 - 0.0004 19.7 0.1 0.00071 18.9 0.1 1.3 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain HATPase_c_2 PF13581.6 CQR55374.1 - 0.00086 19.3 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR55374.1 - 0.025 14.4 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATPase_gene1 PF09527.10 CQR55374.1 - 1.4 9.1 4.0 21 5.4 0.1 2.7 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Response_reg PF00072.24 CQR55375.1 - 5.3e-28 97.4 0.5 8.9e-28 96.7 0.5 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR55375.1 - 1e-22 80.2 0.4 2.6e-22 78.9 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55375.1 - 2.1e-17 62.7 0.1 1.5e-10 40.8 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_31 PF13560.6 CQR55375.1 - 6.7e-05 23.2 0.4 0.0044 17.3 0.4 2.7 1 1 1 2 2 2 2 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR55375.1 - 0.019 15.2 0.6 0.093 13.0 0.2 2.3 2 0 0 2 2 2 0 GGDEF-like domain DUF373 PF04123.13 CQR55375.1 - 0.027 13.9 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Branch PF02485.21 CQR55376.1 - 1.2e-39 136.4 1.1 1.4e-39 136.1 1.1 1.0 1 0 0 1 1 1 1 Core-2/I-Branching enzyme T3RM_EcoP15I_C PF18273.1 CQR55376.1 - 0.054 13.8 0.2 0.14 12.5 0.2 1.7 1 0 0 1 1 1 0 Type III R-M EcoP15I C-terminal domain Peripla_BP_4 PF13407.6 CQR55377.1 - 5.5e-64 216.2 4.8 6.7e-64 215.9 4.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR55377.1 - 8.8e-07 28.6 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LPAM_2 PF13627.6 CQR55377.1 - 0.024 14.5 1.0 0.042 13.7 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site LPAM_1 PF08139.12 CQR55377.1 - 0.036 14.6 1.8 0.078 13.5 1.8 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site ABC_tran PF00005.27 CQR55378.1 - 4.7e-46 156.7 1.2 5.4e-27 95.0 0.1 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR55378.1 - 5.7e-07 29.6 0.2 0.013 15.3 0.0 3.5 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR55378.1 - 9.1e-05 22.0 0.6 0.23 10.8 0.1 2.8 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR55378.1 - 0.00088 19.2 0.4 0.023 14.6 0.0 2.9 3 0 0 3 3 3 1 RsgA GTPase AAA_29 PF13555.6 CQR55378.1 - 0.0026 17.5 0.5 0.0097 15.6 0.0 2.2 3 0 0 3 3 2 1 P-loop containing region of AAA domain AAA PF00004.29 CQR55378.1 - 0.0034 17.8 2.6 13 6.2 0.0 4.2 2 2 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 CQR55378.1 - 0.0045 16.6 0.5 2.3 7.7 0.1 3.5 3 1 1 4 4 4 1 AAA domain AAA_15 PF13175.6 CQR55378.1 - 0.0085 15.8 0.4 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 CQR55378.1 - 0.0096 16.4 2.1 0.031 14.8 0.9 2.5 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 CQR55378.1 - 0.012 14.4 2.1 1.3 7.7 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 CQR55378.1 - 0.019 15.3 4.7 0.59 10.4 0.2 3.3 3 1 0 3 3 3 0 AAA domain TsaE PF02367.17 CQR55378.1 - 0.043 13.8 0.4 5.3 7.0 0.0 2.7 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 CQR55378.1 - 0.068 12.9 0.2 0.95 9.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 CQR55378.1 - 0.08 13.5 1.3 7.4 7.1 0.0 3.2 3 1 0 3 3 3 0 AAA domain NACHT PF05729.12 CQR55378.1 - 0.086 12.8 0.1 0.25 11.2 0.1 2.0 1 1 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 CQR55378.1 - 0.2 11.8 0.2 2.5 8.3 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 CQR55378.1 - 0.23 11.9 1.3 17 5.7 0.6 2.9 2 1 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 CQR55379.1 - 5.9e-46 156.8 52.6 6.4e-45 153.4 52.6 2.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Ac76 PF05814.11 CQR55379.1 - 0.012 15.6 1.3 0.012 15.6 1.3 3.5 3 1 1 4 4 4 0 Orf76 (Ac76) MarR_2 PF12802.7 CQR55380.1 - 2.3e-08 33.8 0.0 3.9e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR55380.1 - 3.4e-08 33.3 0.4 6.4e-08 32.4 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 CQR55380.1 - 1.1e-05 25.8 0.0 1.6e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 CQR55380.1 - 2.5e-05 24.4 0.0 4.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 CQR55380.1 - 4e-05 23.5 0.1 0.00032 20.6 0.0 2.3 3 0 0 3 3 3 1 HTH domain HTH_36 PF13730.6 CQR55380.1 - 0.00011 22.0 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR55380.1 - 0.00013 21.7 0.1 0.00032 20.5 0.1 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 CQR55380.1 - 0.00016 21.5 0.0 0.00028 20.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 CQR55380.1 - 0.00028 20.9 0.0 0.0006 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 CQR55380.1 - 0.00029 20.6 0.4 0.0007 19.4 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 CQR55380.1 - 0.0059 16.1 0.0 0.0099 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 CQR55380.1 - 0.0075 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_29 PF13551.6 CQR55380.1 - 0.0096 15.9 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 CQR55380.1 - 0.062 13.3 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 CQR55380.1 - 0.1 12.3 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 CQR55380.1 - 0.15 11.9 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Fer4_16 PF13484.6 CQR55381.1 - 0.0012 19.7 4.8 0.003 18.5 4.8 1.7 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 CQR55381.1 - 0.037 13.8 2.4 0.037 13.8 2.4 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 CQR55381.1 - 5.6 7.6 9.3 1.3 9.7 3.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Penicillinase_R PF03965.16 CQR55382.1 - 1.2e-26 93.3 0.0 1.4e-26 93.1 0.0 1.0 1 0 0 1 1 1 1 Penicillinase repressor ANAPC2 PF08672.11 CQR55382.1 - 0.00036 21.0 0.0 0.0016 18.9 0.0 2.0 2 0 0 2 2 2 1 Anaphase promoting complex (APC) subunit 2 PaaX PF07848.12 CQR55382.1 - 0.00065 19.9 0.0 0.0011 19.2 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein Lant_dehydr_N PF04738.13 CQR55382.1 - 0.025 12.7 0.0 0.035 12.2 0.0 1.2 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus AbiEi_4 PF13338.6 CQR55382.1 - 0.17 12.1 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin Peptidase_M56 PF05569.11 CQR55383.1 - 6e-47 160.3 0.1 6e-47 160.3 0.1 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 Pyrid_ox_like PF16242.5 CQR55384.1 - 6.1e-45 152.4 1.2 7.4e-45 152.2 1.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Putative_PNPOx PF01243.20 CQR55384.1 - 1e-11 44.9 0.0 1.8e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase TetR_N PF00440.23 CQR55385.1 - 6e-09 35.6 0.1 1.2e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_8 PF14278.6 CQR55385.1 - 9.7e-06 25.6 0.1 0.00014 21.9 0.0 2.1 1 1 1 2 2 2 1 Transcriptional regulator C-terminal region Oxidored_FMN PF00724.20 CQR55386.1 - 3.7e-63 213.9 0.0 7.1e-63 212.9 0.0 1.4 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family MFS_3 PF05977.13 CQR55387.1 - 5e-40 137.4 34.4 6.2e-40 137.1 34.4 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 CQR55387.1 - 2.2e-28 99.2 38.5 2.2e-28 99.2 38.5 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 CQR55387.1 - 3.4e-06 25.9 3.1 3.4e-06 25.9 3.1 2.2 1 1 1 2 2 2 1 MFS/sugar transport protein TrmB PF01978.19 CQR55388.1 - 6.2e-17 61.3 0.0 1.2e-16 60.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 CQR55388.1 - 0.00099 18.4 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 CQR55388.1 - 0.066 13.0 0.0 0.48 10.3 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain GntR PF00392.21 CQR55388.1 - 0.097 12.3 0.0 0.35 10.6 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family GD_N PF16030.5 CQR55389.1 - 0.047 14.0 0.0 0.048 14.0 0.0 1.1 1 0 0 1 1 1 0 Serine protease gd N-terminus TraX PF05857.11 CQR55390.1 - 5.5e-33 114.9 16.5 6.3e-33 114.7 16.5 1.0 1 0 0 1 1 1 1 TraX protein Cu_amine_oxidN1 PF07833.11 CQR55391.1 - 4.8e-22 78.2 0.0 4.2e-21 75.2 0.0 2.4 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain Av_adeno_fibre PF06536.11 CQR55391.1 - 0.072 13.0 0.8 1 9.3 0.1 3.1 2 1 1 3 3 3 0 Avian adenovirus fibre, N-terminal MLTD_N PF06474.12 CQR55391.1 - 0.23 11.7 1.4 0.43 10.8 1.4 1.4 1 0 0 1 1 1 0 MltD lipid attachment motif CNP_C_terminal PF17839.1 CQR55392.1 - 3.6e-28 98.4 0.1 1e-27 97.0 0.1 1.8 1 0 0 1 1 1 1 C-terminal domain of cyclic nucleotide phosphodiesterase Metallophos PF00149.28 CQR55392.1 - 1.1e-16 62.0 0.0 1.5e-16 61.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR55392.1 - 1.4e-08 35.1 0.0 5.1e-07 30.0 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 CQR55392.1 - 0.17 11.2 0.0 1.5 8.0 0.0 2.2 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Nitroreductase PF00881.24 CQR55393.1 - 3e-20 73.0 0.0 3.5e-20 72.7 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR55393.1 - 0.17 11.5 0.0 0.69 9.4 0.0 1.9 2 0 0 2 2 2 0 Putative TM nitroreductase DUF2188 PF09954.9 CQR55394.1 - 0.02 15.0 0.5 0.13 12.4 0.5 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) Rotamase_3 PF13616.6 CQR55395.1 - 7.5e-30 103.9 1.8 2.3e-29 102.3 1.8 1.9 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 CQR55395.1 - 4.1e-25 89.0 6.1 4.1e-25 89.0 6.1 3.2 3 1 1 4 4 4 1 PPIC-type PPIASE domain Rotamase PF00639.21 CQR55395.1 - 4.4e-23 82.0 0.5 4.4e-23 82.0 0.5 2.6 3 1 0 3 3 3 1 PPIC-type PPIASE domain SurA_N_3 PF13624.6 CQR55395.1 - 9.3e-12 45.0 11.6 1.2e-07 31.7 2.3 3.2 2 1 1 3 3 3 2 SurA N-terminal domain SurA_N_2 PF13623.6 CQR55395.1 - 5.9e-09 35.9 9.2 5.5e-06 26.3 5.1 3.5 1 1 1 2 2 2 1 SurA N-terminal domain Copper-bind PF00127.20 CQR55395.1 - 0.0098 16.3 1.8 1.1 9.8 0.2 2.7 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family SurA_N PF09312.11 CQR55395.1 - 0.0099 15.9 0.8 0.0099 15.9 0.8 1.9 2 0 0 2 2 2 1 SurA N-terminal domain Trigger_C PF05698.14 CQR55395.1 - 0.015 15.3 1.4 0.015 15.3 1.4 3.2 2 1 1 3 3 3 0 Bacterial trigger factor protein (TF) C-terminus NusG_II PF07009.11 CQR55395.1 - 0.055 13.7 2.9 0.24 11.6 0.4 2.6 2 0 0 2 2 2 0 NusG domain II CbiA PF01656.23 CQR55395.1 - 0.071 13.2 0.6 0.13 12.3 0.6 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SecD-TM1 PF13721.6 CQR55395.1 - 1.1 9.8 8.2 12 6.4 5.4 3.1 2 1 0 2 2 2 0 SecD export protein N-terminal TM region LytTR PF04397.15 CQR55396.1 - 9.6e-05 22.5 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 LytTr DNA-binding domain Lactonase PF10282.9 CQR55397.1 - 5.5e-105 351.4 0.0 6.3e-105 351.2 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.12 CQR55397.1 - 0.001 18.7 0.0 1.5 8.3 0.0 3.5 2 1 2 4 4 4 2 SMP-30/Gluconolactonase/LRE-like region SBP56 PF05694.11 CQR55397.1 - 0.0039 16.1 0.0 0.036 12.9 0.0 2.0 2 0 0 2 2 2 1 56kDa selenium binding protein (SBP56) PD40 PF07676.12 CQR55397.1 - 0.046 13.7 0.0 55 3.9 0.0 4.1 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat DUF1513 PF07433.11 CQR55397.1 - 0.047 12.8 0.0 0.64 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1513) WYL PF13280.6 CQR55397.1 - 0.2 11.7 0.0 12 5.9 0.0 2.4 1 1 1 2 2 2 0 WYL domain WD40 PF00400.32 CQR55397.1 - 0.45 11.5 2.3 11 7.1 0.4 3.6 3 1 0 3 3 3 0 WD domain, G-beta repeat Hfq PF17209.3 CQR55398.1 - 1.2e-21 76.0 0.1 1.4e-21 75.9 0.1 1.0 1 0 0 1 1 1 1 Hfq protein Flag1_repress PF03614.13 CQR55398.1 - 0.11 12.3 0.1 0.12 12.2 0.1 1.0 1 0 0 1 1 1 0 Repressor of phase-1 flagellin PAP2 PF01569.21 CQR55399.1 - 1.4e-21 76.7 10.8 1.4e-21 76.7 10.8 2.8 1 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 CQR55399.1 - 1.5e-10 41.0 3.5 1.5e-10 41.0 3.5 2.1 2 1 0 2 2 2 1 PAP2 superfamily ArAE_1 PF06081.11 CQR55401.1 - 2.1e-31 109.0 14.3 2.9e-31 108.5 14.3 1.2 1 0 0 1 1 1 1 Aromatic acid exporter family member 1 FUSC PF04632.12 CQR55401.1 - 2.3e-14 52.9 9.2 7.2e-14 51.3 9.2 1.7 1 1 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.6 CQR55401.1 - 8.2e-10 38.9 13.4 1.3e-09 38.3 13.4 1.3 1 0 0 1 1 1 1 Fusaric acid resistance protein-like HPP PF04982.13 CQR55401.1 - 0.0013 18.9 1.7 0.0013 18.9 1.7 2.3 1 1 1 2 2 2 2 HPP family KAR9 PF08580.10 CQR55401.1 - 0.023 13.3 0.8 0.031 12.8 0.8 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Cortex-I_coil PF09304.10 CQR55401.1 - 0.037 14.2 1.9 0.085 13.1 1.9 1.6 1 0 0 1 1 1 0 Cortexillin I, coiled coil DUF2585 PF10755.9 CQR55401.1 - 0.046 13.4 0.9 0.068 12.9 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2585) ALMT PF11744.8 CQR55401.1 - 0.054 12.3 0.1 0.096 11.5 0.1 1.6 1 1 0 1 1 1 0 Aluminium activated malate transporter DUF2955 PF11168.8 CQR55401.1 - 1.8 8.4 12.8 3.1 7.7 12.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2955) UvrD-helicase PF00580.21 CQR55402.1 - 1.3e-13 51.2 0.5 1.6e-07 31.2 0.0 2.6 3 0 0 3 3 3 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 CQR55402.1 - 1.7e-12 47.9 0.0 3.1e-11 43.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 CQR55402.1 - 3.7e-09 36.3 0.1 1.3e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 CQR55402.1 - 4.5e-07 29.6 0.6 0.0006 19.3 0.0 3.1 4 0 0 4 4 4 2 UvrD-like helicase C-terminal domain PhoH PF02562.16 CQR55402.1 - 5e-05 22.8 0.1 0.11 11.9 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein Viral_helicase1 PF01443.18 CQR55402.1 - 8.2e-05 22.5 0.0 1.5 8.5 0.0 3.5 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 CQR55402.1 - 0.00019 21.2 0.0 0.14 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 CQR55402.1 - 0.00021 21.7 0.0 0.24 11.7 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 CQR55402.1 - 0.00025 21.3 0.0 0.6 10.4 0.0 2.9 3 0 0 3 3 3 2 AAA domain DEAD PF00270.29 CQR55402.1 - 0.0096 15.7 0.0 0.065 13.0 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 CQR55402.1 - 0.012 14.8 0.0 0.052 12.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 CQR55402.1 - 0.088 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 CQR55402.1 - 0.12 12.4 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit MFS_1 PF07690.16 CQR55403.1 - 3.5e-44 151.2 58.5 2.8e-33 115.3 41.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR55403.1 - 3.8e-10 39.2 21.8 1.5e-07 30.7 10.7 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR55403.1 - 4.3e-07 29.1 28.0 1.5e-05 24.1 8.2 2.1 1 1 1 2 2 2 2 MFS_1 like family PUCC PF03209.15 CQR55403.1 - 0.0079 15.2 21.9 0.36 9.8 0.3 2.3 2 0 0 2 2 2 2 PUCC protein MarR PF01047.22 CQR55404.1 - 7e-12 45.1 0.0 1.6e-11 44.0 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR55404.1 - 1.3e-11 44.2 0.1 4.4e-11 42.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 CQR55404.1 - 8.1e-07 29.4 0.0 3.9e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR55404.1 - 0.00021 20.8 0.1 0.00071 19.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 CQR55404.1 - 0.017 15.4 0.1 0.072 13.4 0.1 1.8 1 1 0 1 1 1 0 Penicillinase repressor TrmB PF01978.19 CQR55404.1 - 0.023 14.6 0.0 0.046 13.6 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 CQR55404.1 - 0.058 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain EcoEI_R_C PF08463.10 CQR55404.1 - 0.079 13.1 0.2 0.89 9.7 0.2 2.2 1 1 0 1 1 1 0 EcoEI R protein C-terminal HTH_23 PF13384.6 CQR55404.1 - 0.14 12.0 0.0 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain TAL_FSA PF00923.19 CQR55405.1 - 5.7e-58 196.5 0.1 1.5e-57 195.1 0.1 1.7 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase Macro PF01661.21 CQR55407.1 - 2e-36 124.6 0.1 2.6e-36 124.2 0.1 1.1 1 0 0 1 1 1 1 Macro domain Acetyltransf_1 PF00583.25 CQR55408.1 - 9.5e-18 64.5 0.0 2.2e-17 63.4 0.0 1.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR55408.1 - 9.6e-14 51.4 0.0 1.9e-13 50.5 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR55408.1 - 3.2e-13 49.9 0.0 5.4e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55408.1 - 3.2e-06 27.4 0.0 4e-06 27.0 0.0 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR55408.1 - 0.00062 20.5 0.0 0.00078 20.1 0.0 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55408.1 - 0.0048 16.8 0.0 0.018 15.0 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR55408.1 - 0.037 14.2 0.0 0.059 13.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 CQR55408.1 - 0.061 13.4 0.0 1.1 9.3 0.0 2.4 2 1 1 3 3 3 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 CQR55408.1 - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 CQR55408.1 - 0.19 11.4 0.1 2.7 7.7 0.0 2.2 1 1 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3450 PF11932.8 CQR55409.1 - 0.071 12.4 0.0 0.075 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Rib_5-P_isom_A PF06026.14 CQR55410.1 - 1.6e-63 213.4 0.0 2.3e-63 212.9 0.0 1.2 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 CQR55410.1 - 1.9e-06 27.9 0.2 0.00015 21.8 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain VanZ PF04892.12 CQR55411.1 - 2.3e-21 76.7 5.7 3.1e-21 76.4 5.7 1.1 1 0 0 1 1 1 1 VanZ like family DUF3087 PF11286.8 CQR55411.1 - 1.7 8.1 5.2 0.23 10.9 1.1 1.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3087) Acetyltransf_7 PF13508.7 CQR55412.1 - 1.1e-08 35.4 0.0 1.6e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55412.1 - 4.1e-08 33.5 0.1 5.3e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR55412.1 - 2.6e-07 30.6 0.0 3.1e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR55412.1 - 0.00064 19.8 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 CQR55412.1 - 0.0033 17.5 0.1 2.5 8.2 0.0 2.5 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55412.1 - 0.0091 16.0 0.0 0.018 15.0 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_15 PF17013.5 CQR55412.1 - 0.091 12.2 0.0 0.74 9.2 0.1 2.0 1 1 0 1 1 1 0 Putative acetyl-transferase MarR PF01047.22 CQR55413.1 - 3.2e-17 62.2 0.0 5.3e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR55413.1 - 2.6e-13 50.2 0.0 4e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 CQR55413.1 - 2.1e-10 40.3 0.0 3.4e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 CQR55413.1 - 1.7e-06 28.3 0.0 2.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.6 CQR55413.1 - 7.5e-06 26.0 0.1 1.1e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 CQR55413.1 - 0.00013 21.8 0.0 0.00066 19.5 0.0 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 CQR55413.1 - 0.00048 20.3 0.0 0.0009 19.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 CQR55413.1 - 0.0037 17.1 0.0 0.0058 16.5 0.0 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.6 CQR55413.1 - 0.0039 16.7 0.0 0.008 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4364 PF14277.6 CQR55413.1 - 0.004 16.9 0.2 0.0075 16.0 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) PadR PF03551.14 CQR55413.1 - 0.0043 17.0 0.0 0.0073 16.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family P22_portal PF16510.5 CQR55413.1 - 0.0071 15.0 0.0 0.008 14.8 0.0 1.2 1 0 0 1 1 1 1 Phage P22-like portal protein HTH_20 PF12840.7 CQR55413.1 - 0.0087 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 CQR55413.1 - 0.0093 16.3 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 CQR55413.1 - 0.0096 15.7 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain SMC_ScpB PF04079.16 CQR55413.1 - 0.012 15.2 0.1 0.02 14.5 0.0 1.3 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB DUF4423 PF14394.6 CQR55413.1 - 0.023 14.4 0.1 0.12 12.1 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 CQR55413.1 - 0.026 14.5 0.1 0.056 13.4 0.0 1.7 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain Replic_Relax PF13814.6 CQR55413.1 - 0.028 14.5 0.0 0.041 14.0 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation PaaX PF07848.12 CQR55413.1 - 0.047 13.9 0.1 0.077 13.2 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_11 PF08279.12 CQR55413.1 - 0.056 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF4194 PF13835.6 CQR55413.1 - 0.056 13.2 0.1 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4194) HxlR PF01638.17 CQR55413.1 - 0.06 13.2 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.21 CQR55413.1 - 0.13 11.9 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MMPL PF03176.15 CQR55414.1 - 1.1e-107 359.9 22.3 2e-60 204.5 4.2 3.8 3 1 0 3 3 3 2 MMPL family Baculo_PEP_C PF04513.12 CQR55414.1 - 2.3e-06 27.7 5.4 0.0025 17.8 0.2 3.9 1 1 3 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 CQR55414.1 - 0.0006 19.9 0.0 1.9 8.5 0.0 4.2 3 1 1 4 4 4 1 Protein of unknown function (DUF1664) ATG16 PF08614.11 CQR55414.1 - 0.0095 16.2 0.2 3.1 8.0 0.0 3.0 2 1 1 3 3 3 1 Autophagy protein 16 (ATG16) WXG100 PF06013.12 CQR55414.1 - 0.017 15.4 12.1 15 5.9 0.5 5.8 3 2 1 4 4 4 0 Proteins of 100 residues with WXG Sec8_exocyst PF04048.14 CQR55414.1 - 0.027 14.3 0.5 0.62 9.9 0.1 3.2 3 0 0 3 3 3 0 Sec8 exocyst complex component specific domain Phage_TAC_12 PF12363.8 CQR55414.1 - 0.14 12.6 0.3 9.9 6.6 0.0 2.9 2 0 0 2 2 2 0 Phage tail assembly chaperone protein, TAC MitMem_reg PF13012.6 CQR55414.1 - 0.19 12.2 0.2 8.1 6.9 0.1 3.5 2 1 0 2 2 2 0 Maintenance of mitochondrial structure and function Sigma70_r4_2 PF08281.12 CQR55415.1 - 1.1e-16 60.2 0.2 2.9e-16 58.9 0.2 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR55415.1 - 1.2e-09 37.8 0.2 3.2e-09 36.4 0.1 1.8 1 1 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR55415.1 - 8.6e-09 34.8 0.1 2.1e-08 33.5 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR55415.1 - 4.8e-07 29.9 0.8 0.00011 22.1 0.8 2.1 1 1 0 1 1 1 1 ECF sigma factor Phage_antitermQ PF06530.12 CQR55415.1 - 0.0014 18.6 0.0 0.003 17.5 0.0 1.6 1 0 0 1 1 1 1 Phage antitermination protein Q HTH_23 PF13384.6 CQR55415.1 - 0.003 17.3 0.0 0.041 13.7 0.0 2.4 1 1 1 2 2 2 1 Homeodomain-like domain UPF0122 PF04297.14 CQR55415.1 - 0.012 15.8 0.2 0.073 13.3 0.0 2.3 2 2 1 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like HOIP-UBA PF16678.5 CQR55415.1 - 0.064 13.3 0.3 0.28 11.2 0.1 1.9 2 0 0 2 2 2 0 HOIP UBA domain pair DUF3813 PF12758.7 CQR55415.1 - 0.15 12.4 3.1 1.9 8.9 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3813) DUF5643 PF18705.1 CQR55416.1 - 1.4e-14 54.0 0.1 5.1e-14 52.2 0.1 1.8 2 0 0 2 2 2 1 Family of unknown function (DUF5643) DUF4179 PF13786.6 CQR55416.1 - 2e-13 50.6 0.0 5.4e-13 49.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4179) GspL_C PF12693.7 CQR55416.1 - 0.089 12.6 1.4 4.5 7.1 0.0 2.7 3 0 0 3 3 3 0 GspL periplasmic domain TPR_19 PF14559.6 CQR55417.1 - 3.7e-11 43.4 3.6 1.4e-06 28.7 0.1 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 CQR55417.1 - 6.8e-10 39.4 1.8 7.3e-07 29.7 0.5 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR55417.1 - 4.1e-09 36.0 7.6 0.00051 20.1 0.4 3.9 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 CQR55417.1 - 1e-08 34.6 10.6 0.0053 16.8 0.4 4.2 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 CQR55417.1 - 3e-07 30.4 0.6 0.55 10.7 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR55417.1 - 3.1e-07 30.6 8.2 0.00073 19.8 0.6 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR55417.1 - 5.2e-07 29.8 1.8 0.012 15.8 0.3 2.2 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.6 CQR55417.1 - 8.2e-07 29.3 1.8 0.0051 17.5 0.1 3.0 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_20 PF14561.6 CQR55417.1 - 3.1e-06 27.4 0.4 0.00013 22.2 0.0 2.5 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 CQR55417.1 - 3.4e-06 27.3 7.0 0.14 12.9 0.7 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat FAT PF02259.23 CQR55417.1 - 5.2e-05 22.6 0.4 6.4e-05 22.3 0.4 1.0 1 0 0 1 1 1 1 FAT domain TPR_9 PF13371.6 CQR55417.1 - 0.00044 20.3 0.1 0.54 10.4 0.0 3.0 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_15 PF13429.6 CQR55417.1 - 0.0012 18.1 3.3 0.0045 16.2 0.1 2.1 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 CQR55417.1 - 0.0059 16.4 6.8 0.2 11.6 1.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 CQR55417.1 - 0.043 13.7 8.7 0.089 12.7 0.2 4.2 5 0 0 5 5 5 0 Tetratricopeptide repeat MetRS-N PF09635.10 CQR55417.1 - 0.054 14.0 0.1 0.076 13.6 0.1 1.3 1 0 0 1 1 1 0 MetRS-N binding domain DUF3808 PF10300.9 CQR55417.1 - 0.084 11.6 3.2 0.11 11.2 3.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3808) Aldo_ket_red PF00248.21 CQR55418.1 - 1.3e-61 208.4 0.0 1.5e-61 208.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ADH_zinc_N_2 PF13602.6 CQR55418.1 - 0.035 15.1 0.0 0.059 14.4 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase fn3 PF00041.21 CQR55421.1 - 1.9e-06 28.1 0.8 4.7e-06 26.9 0.2 2.0 2 0 0 2 2 2 1 Fibronectin type III domain F5_F8_type_C PF00754.25 CQR55421.1 - 9.5e-05 22.5 3.0 0.00023 21.3 1.5 2.3 1 1 1 2 2 2 1 F5/8 type C domain Pur_ac_phosph_N PF16656.5 CQR55421.1 - 0.00089 19.8 2.8 0.00089 19.8 2.8 3.3 3 1 0 3 3 3 1 Purple acid Phosphatase, N-terminal domain Trypan_PARP PF05887.11 CQR55421.1 - 0.0074 16.3 20.1 0.016 15.2 20.1 1.5 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.13 CQR55421.1 - 6.1 5.2 12.3 8.8 4.7 12.3 1.3 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein SBP_bac_8 PF13416.6 CQR55422.1 - 3.4e-36 125.5 14.0 3.4e-36 125.5 14.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR55422.1 - 6.7e-28 98.5 23.4 3.4e-27 96.2 17.4 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR55423.1 - 6e-19 68.5 22.9 6e-19 68.5 22.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR55424.1 - 6.7e-15 55.3 14.0 6.7e-15 55.3 14.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4014 PF13198.6 CQR55424.1 - 0.17 12.3 0.1 0.17 12.3 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4014) His_kinase PF06580.13 CQR55425.1 - 4.5e-25 87.8 1.3 1.1e-24 86.5 1.3 1.7 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR55425.1 - 9e-17 61.7 2.2 9e-17 61.7 2.2 1.9 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR55425.1 - 5.1e-07 30.2 0.0 1.3e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF5066 PF16728.5 CQR55425.1 - 9.7e-06 25.1 0.0 2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5066) HAMP PF00672.25 CQR55425.1 - 0.00083 19.7 0.0 0.0018 18.6 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR55425.1 - 0.0025 17.7 1.1 0.0067 16.3 0.1 2.2 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.6 CQR55425.1 - 0.0089 16.0 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SBP_bac_1 PF01547.25 CQR55426.1 - 4.1e-34 118.9 0.7 6.2e-34 118.4 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR55426.1 - 1.4e-31 110.4 0.0 2e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR55426.1 - 0.019 14.7 0.0 5.7 6.6 0.0 2.4 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR55427.1 - 5.2e-25 87.8 0.0 1.4e-24 86.4 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR55427.1 - 5.4e-20 71.0 0.2 3.2e-09 36.7 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR55427.1 - 1.9e-18 66.5 0.0 5.2e-18 65.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR55427.1 - 5.9e-06 26.5 0.0 1.5e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 GGDEF-like domain UPF0122 PF04297.14 CQR55427.1 - 0.017 15.3 0.1 0.044 14.0 0.1 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Coat_X PF07552.11 CQR55428.1 - 0.033 14.0 0.5 0.089 12.6 0.5 1.7 1 0 0 1 1 1 0 Spore Coat Protein X and V domain Y_Y_Y PF07495.13 CQR55428.1 - 0.063 13.2 5.0 0.7 9.9 0.0 2.5 2 0 0 2 2 2 0 Y_Y_Y domain RHS_repeat PF05593.14 CQR55429.1 - 8.6e-39 131.5 109.0 9.6e-08 32.4 4.4 19.6 14 4 7 21 21 21 15 RHS Repeat Zn_Tnp_IS1595 PF12760.7 CQR55430.1 - 0.00094 19.1 1.1 0.0016 18.3 1.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 CQR55430.1 - 0.0015 17.9 2.1 0.037 13.4 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 CQR55430.1 - 0.0073 16.4 1.2 0.012 15.7 1.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Elf1 PF05129.13 CQR55430.1 - 0.009 16.0 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Ribosomal_S27e PF01667.17 CQR55430.1 - 0.009 15.7 1.2 0.027 14.2 1.2 1.7 1 1 1 2 2 2 2 Ribosomal protein S27 DZR PF12773.7 CQR55430.1 - 0.0097 15.9 0.3 0.015 15.3 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 CQR55430.1 - 0.018 14.7 5.4 0.1 12.3 5.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 CQR55430.1 - 0.032 14.2 0.3 0.049 13.7 0.3 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-Sec23_Sec24 PF04810.15 CQR55430.1 - 0.036 14.1 2.0 0.06 13.4 2.0 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger DpnI PF06044.12 CQR55430.1 - 0.041 13.5 0.6 0.045 13.4 0.6 1.1 1 0 0 1 1 1 0 Dam-replacing family zinc-ribbons_6 PF07191.12 CQR55430.1 - 0.071 13.1 1.0 0.13 12.3 1.0 1.4 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_4 PF13717.6 CQR55430.1 - 0.086 12.8 2.6 0.24 11.3 2.6 1.7 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.7 CQR55430.1 - 0.086 12.7 8.0 1.4 8.8 0.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.12 CQR55430.1 - 0.094 12.2 4.5 2.8 7.5 4.8 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 CQR55430.1 - 0.1 12.6 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 CQR55430.1 - 0.11 11.8 1.1 0.25 10.7 1.1 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger TFIIS_C PF01096.18 CQR55430.1 - 0.24 11.3 2.3 10 6.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HTH_19 PF12844.7 CQR55431.1 - 0.0003 20.7 0.1 0.0014 18.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR55431.1 - 0.00037 20.5 0.0 0.00082 19.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix YdaS_antitoxin PF15943.5 CQR55431.1 - 0.0024 17.7 0.0 0.004 17.0 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 CQR55431.1 - 0.0038 17.0 0.0 0.0085 15.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 CQR55431.1 - 0.016 15.0 0.0 0.21 11.4 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain HTH_28 PF13518.6 CQR55431.1 - 0.032 14.4 0.0 0.12 12.5 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 CQR55431.1 - 0.044 14.1 0.0 0.079 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.11 CQR55431.1 - 0.048 14.0 2.2 1.9 8.9 2.2 2.4 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_17 PF12728.7 CQR55431.1 - 0.056 13.6 0.0 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 CQR55431.1 - 0.089 12.8 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Glyco_hydro_6 PF01341.17 CQR55431.1 - 0.097 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 6 LZ3wCH PF18517.1 CQR55431.1 - 0.44 10.7 0.1 0.44 10.7 0.1 3.6 4 0 0 4 4 4 0 Leucine zipper with capping helix domain CFC PF09443.10 CQR55432.1 - 0.14 12.0 1.5 0.23 11.3 1.5 1.3 1 0 0 1 1 1 0 Cripto_Frl-1_Cryptic (CFC) DCD PF06559.11 CQR55433.1 - 0.022 13.5 0.1 0.028 13.2 0.1 1.1 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) OCRE PF17780.1 CQR55434.1 - 0.013 15.5 1.9 0.13 12.3 1.9 2.5 1 1 0 1 1 1 0 OCRE domain RHS_repeat PF05593.14 CQR55434.1 - 0.016 15.7 0.1 0.39 11.3 0.1 2.5 2 0 0 2 2 2 0 RHS Repeat Siva PF05458.12 CQR55434.1 - 0.022 14.5 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) YL1_C PF08265.11 CQR55434.1 - 0.68 9.7 3.5 8.7 6.2 0.4 2.4 2 0 0 2 2 2 0 YL1 nuclear protein C-terminal domain HTH_33 PF13592.6 CQR55435.1 - 2.7e-19 68.6 0.0 5.2e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Terminase_5 PF06056.12 CQR55435.1 - 1.1e-08 34.8 0.0 6.7e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_32 PF13565.6 CQR55435.1 - 1.3e-08 35.3 0.0 2.3e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 CQR55435.1 - 3.2e-07 30.3 0.0 7.6e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 CQR55435.1 - 6.1e-07 29.1 0.2 1.7e-06 27.7 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 CQR55435.1 - 0.00014 21.9 0.0 0.00047 20.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 CQR55435.1 - 0.00057 20.3 0.6 0.0017 18.8 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 CQR55435.1 - 0.013 15.1 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR55435.1 - 0.019 14.6 0.1 0.061 13.0 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 CQR55435.1 - 0.025 14.4 0.5 0.093 12.5 0.1 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain DUF1670 PF07900.11 CQR55435.1 - 0.082 12.3 0.1 0.17 11.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1670) DDE_3 PF13358.6 CQR55436.1 - 3.9e-36 124.0 0.0 4.8e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease MFS_1 PF07690.16 CQR55437.1 - 2.4e-33 115.6 42.6 1.5e-21 76.8 19.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR55437.1 - 7.7e-17 60.9 25.3 9.1e-17 60.6 25.3 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector FA_desaturase PF00487.24 CQR55438.1 - 2.6e-35 122.5 12.9 2.6e-35 122.5 12.9 1.8 1 1 1 2 2 2 2 Fatty acid desaturase HisKA_3 PF07730.13 CQR55439.1 - 6.3e-21 74.7 4.4 1.6e-20 73.4 2.6 2.4 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR55439.1 - 5.7e-06 26.8 0.2 2.9e-05 24.6 0.2 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55439.1 - 0.0013 18.7 0.0 0.0027 17.7 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR55439.1 - 0.06 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3234 PF11572.8 CQR55439.1 - 0.094 12.9 0.0 0.23 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3234) Response_reg PF00072.24 CQR55440.1 - 4.1e-25 88.1 0.2 6e-25 87.6 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR55440.1 - 7.5e-18 63.8 0.0 1.7e-17 62.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR55440.1 - 0.00016 21.3 0.0 0.00046 19.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55440.1 - 0.00025 20.5 0.0 0.00046 19.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 CQR55440.1 - 0.012 15.5 0.2 0.039 13.9 0.1 2.0 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 CQR55440.1 - 0.063 13.1 0.0 0.26 11.1 0.0 2.0 1 1 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.6 CQR55440.1 - 0.096 13.1 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Polysacc_synt PF01943.17 CQR55441.1 - 1.6e-19 70.4 20.8 2.6e-19 69.7 20.3 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 CQR55441.1 - 1.8e-08 34.6 11.1 1.8e-08 34.6 11.1 3.6 3 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Amidase_6 PF12671.7 CQR55442.1 - 1.6e-37 129.2 0.3 1.6e-37 129.2 0.3 1.7 2 0 0 2 2 2 1 Putative amidase domain Sortase PF04203.13 CQR55443.1 - 4.4e-18 65.3 0.0 5.4e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Sortase domain O-antigen_lig PF13425.6 CQR55444.1 - 0.26 10.0 0.3 0.28 9.9 0.3 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Presenilin PF01080.17 CQR55444.1 - 0.93 8.2 2.4 0.93 8.2 2.4 1.0 1 0 0 1 1 1 0 Presenilin CLN3 PF02487.17 CQR55444.1 - 1.7 7.6 3.1 1.9 7.5 3.1 1.0 1 0 0 1 1 1 0 CLN3 protein SWIM PF04434.17 CQR55445.1 - 0.00014 21.5 0.7 0.00027 20.5 0.7 1.5 1 0 0 1 1 1 1 SWIM zinc finger HEAT_2 PF13646.6 CQR55446.1 - 1.8e-11 44.3 3.5 1.8e-06 28.2 0.3 3.1 1 1 2 3 3 3 2 HEAT repeats HEAT PF02985.22 CQR55446.1 - 3.7e-05 23.6 2.8 0.39 11.1 0.0 4.4 4 0 0 4 4 4 2 HEAT repeat Ferritin PF00210.24 CQR55446.1 - 0.069 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Ferritin-like domain STE PF02200.16 CQR55446.1 - 0.13 12.6 0.0 1.2 9.6 0.0 2.3 2 0 0 2 2 2 0 STE like transcription factor AAA_5 PF07728.14 CQR55447.1 - 1.6e-36 125.3 0.0 3.1e-36 124.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 CQR55447.1 - 7.2e-06 25.3 0.5 3.7e-05 22.9 0.2 2.2 2 1 0 2 2 2 1 MCM P-loop domain AAA_3 PF07726.11 CQR55447.1 - 0.00022 21.1 0.0 0.015 15.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 CQR55447.1 - 0.00041 20.1 0.0 0.0033 17.1 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 CQR55447.1 - 0.0017 18.8 0.0 0.003 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 CQR55447.1 - 0.067 13.6 0.0 0.44 11.0 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 CQR55447.1 - 0.12 11.8 0.1 1.6 8.2 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 CQR55447.1 - 0.15 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Cofac_haem_bdg PF04187.13 CQR55448.1 - 0.00082 19.4 0.3 0.0018 18.3 0.3 1.6 1 0 0 1 1 1 1 Haem-binding uptake, Tiki superfamily, ChaN AAA_lid_2 PF17863.1 CQR55448.1 - 0.097 12.5 2.1 0.19 11.6 0.5 2.3 2 0 0 2 2 2 0 AAA lid domain VWA_CoxE PF05762.14 CQR55449.1 - 3.6e-47 160.6 0.0 6.1e-47 159.9 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein Semialdhyde_dh PF01118.24 CQR55450.1 - 2.6e-31 108.6 0.0 4.5e-31 107.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 CQR55450.1 - 1.5e-28 100.1 0.0 1.3e-27 97.0 0.0 2.4 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.6 CQR55450.1 - 0.00071 19.5 0.0 0.0016 18.4 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding GFO_IDH_MocA PF01408.22 CQR55450.1 - 0.0025 18.6 0.0 0.0055 17.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 CQR55450.1 - 0.014 16.1 0.1 0.089 13.5 0.1 2.2 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Epimerase PF01370.21 CQR55450.1 - 0.026 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 CQR55450.1 - 0.029 14.5 0.0 0.39 10.8 0.0 2.3 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.20 CQR55450.1 - 0.035 13.7 0.0 0.13 11.9 0.0 1.9 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Sacchrp_dh_NADP PF03435.18 CQR55450.1 - 0.073 13.3 0.0 0.18 12.0 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 CQR55450.1 - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family PseudoU_synth_2 PF00849.22 CQR55451.1 - 8.8e-15 55.1 0.1 3.7e-13 49.9 0.1 2.2 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 CQR55451.1 - 8.2e-11 41.5 0.0 1.1e-09 37.8 0.0 2.6 1 1 1 2 2 2 1 S4 domain S4_2 PF13275.6 CQR55451.1 - 0.00087 19.1 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 S4 domain LPAM_1 PF08139.12 CQR55452.1 - 0.013 16.0 1.7 0.029 14.9 1.7 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Peptidase_M4_C PF02868.15 CQR55452.1 - 0.034 14.0 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Thermolysin metallopeptidase, alpha-helical domain DUF3558 PF12079.8 CQR55452.1 - 2.2 8.3 5.5 3.6 7.5 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) Ibs_toxin PF13956.6 CQR55452.1 - 4 7.6 5.5 7.1 6.8 5.5 1.4 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system ABC_membrane PF00664.23 CQR55453.1 - 2e-41 142.5 19.3 2.9e-41 141.9 19.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR55453.1 - 1.8e-32 112.7 0.0 3.8e-32 111.7 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55453.1 - 5.8e-07 29.2 0.1 9.8e-05 21.9 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR55453.1 - 0.0017 18.8 0.0 0.0033 17.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR55453.1 - 0.0025 17.8 0.0 0.0077 16.2 0.0 1.8 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 CQR55453.1 - 0.0056 17.1 0.2 3.6 8.0 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 CQR55453.1 - 0.0061 16.3 0.3 0.013 15.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR55453.1 - 0.019 15.3 0.0 0.18 12.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR55453.1 - 0.021 15.3 1.5 0.056 13.9 0.4 2.0 2 0 0 2 2 2 0 AAA domain Peptidase_M23 PF01551.22 CQR55453.1 - 0.022 15.0 0.7 0.28 11.4 0.1 2.3 2 0 0 2 2 2 0 Peptidase family M23 IstB_IS21 PF01695.17 CQR55453.1 - 0.036 13.8 0.2 0.3 10.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 CQR55453.1 - 0.05 13.4 0.4 0.16 11.7 0.4 1.9 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR55453.1 - 0.055 13.2 0.2 0.87 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain NTPase_1 PF03266.15 CQR55453.1 - 0.077 12.9 0.4 10 6.0 0.0 2.4 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.20 CQR55453.1 - 0.087 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 CQR55453.1 - 0.12 11.7 0.0 0.29 10.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_21 PF13304.6 CQR55453.1 - 0.12 12.2 0.2 0.27 11.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 CQR55453.1 - 0.13 12.0 0.1 0.34 10.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR55453.1 - 0.17 11.5 0.4 0.32 10.6 0.4 1.4 1 0 0 1 1 1 0 AAA domain DUF4079 PF13301.6 CQR55453.1 - 0.19 11.9 3.6 0.19 11.9 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4079) PIG-P PF08510.12 CQR55453.1 - 2.3 8.1 4.8 1.1 9.2 1.8 2.0 2 1 0 2 2 2 0 PIG-P MarR_2 PF12802.7 CQR55454.1 - 4.5e-11 42.5 1.8 5e-11 42.3 0.2 1.9 3 0 0 3 3 3 1 MarR family MarR PF01047.22 CQR55454.1 - 1.2e-09 37.9 0.7 3.7e-09 36.4 0.3 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 CQR55454.1 - 3.4e-09 37.1 0.2 5.5e-09 36.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR55454.1 - 8.4e-05 22.1 0.2 0.00024 20.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 CQR55454.1 - 0.00092 19.3 0.2 0.0019 18.4 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 CQR55454.1 - 0.011 15.6 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 CQR55454.1 - 0.018 14.5 0.4 2.7 7.6 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 CQR55454.1 - 0.057 13.2 0.4 0.55 10.1 0.1 2.4 2 1 0 2 2 2 0 LexA DNA binding domain Acetyltransf_1 PF00583.25 CQR55455.1 - 7.3e-15 55.2 0.1 9.9e-15 54.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 CQR55455.1 - 6e-10 39.9 0.0 7.1e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR55455.1 - 6.2e-10 39.4 0.0 1.1e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR55455.1 - 2.1e-08 34.2 0.0 2.8e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55455.1 - 1.7e-07 31.5 0.0 1.9e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 CQR55455.1 - 0.0014 18.8 0.5 0.0019 18.4 0.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55455.1 - 0.0016 18.4 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein TMP-TENI PF02581.17 CQR55456.1 - 3.2e-61 205.8 0.5 3.7e-61 205.6 0.5 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 CQR55456.1 - 0.0088 15.4 0.9 0.011 15.0 0.3 1.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG QRPTase_C PF01729.19 CQR55456.1 - 0.014 15.2 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Phos_pyr_kin PF08543.12 CQR55457.1 - 9.5e-96 319.9 0.3 1.1e-95 319.7 0.3 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 CQR55457.1 - 6.7e-15 55.2 0.3 7.6e-15 55.0 0.3 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 CQR55458.1 - 4.8e-89 298.0 7.3 5.4e-89 297.8 7.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 CQR55458.1 - 4.7e-08 32.7 1.6 6.2e-08 32.3 1.1 1.5 1 1 1 2 2 2 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 CQR55458.1 - 3.7e-07 29.9 2.7 5e-07 29.5 2.7 1.1 1 0 0 1 1 1 1 Carbohydrate kinase TGBp3 PF02495.17 CQR55458.1 - 0.11 12.2 0.2 0.32 10.7 0.2 1.8 1 0 0 1 1 1 0 Triple gene block 3 NMT1 PF09084.11 CQR55459.1 - 1.9e-71 240.4 0.0 2.4e-71 240.1 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 CQR55459.1 - 1.8e-07 31.1 0.3 5e-06 26.4 0.3 2.5 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 CQR55459.1 - 0.00019 20.9 0.1 0.016 14.7 0.0 2.4 2 1 1 3 3 3 2 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 CQR55459.1 - 0.002 17.8 0.0 0.013 15.1 0.0 1.9 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.22 CQR55460.1 - 9e-28 97.3 8.9 9e-28 97.3 8.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2070 PF09843.9 CQR55460.1 - 7.4 4.7 12.0 14 3.8 12.0 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 CQR55461.1 - 6.1e-28 98.0 0.0 8.1e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55461.1 - 7e-06 26.1 0.4 0.0018 18.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR55461.1 - 0.002 17.8 0.1 0.005 16.6 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 CQR55461.1 - 0.0046 16.2 0.0 0.0059 15.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain RsgA_GTPase PF03193.16 CQR55461.1 - 0.0062 16.5 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 CQR55461.1 - 0.0081 16.4 0.3 0.029 14.6 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR55461.1 - 0.016 15.6 0.1 0.024 15.0 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 CQR55461.1 - 0.024 15.1 0.0 0.056 13.9 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 CQR55461.1 - 0.049 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR55461.1 - 0.063 13.2 0.4 0.23 11.4 0.1 1.9 2 0 0 2 2 2 0 NACHT domain FeoB_N PF02421.18 CQR55461.1 - 0.068 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_5 PF07728.14 CQR55461.1 - 0.072 13.1 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 CQR55461.1 - 0.096 13.1 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 CQR55461.1 - 0.11 12.3 0.1 0.42 10.3 0.0 2.0 3 1 0 3 3 3 0 AAA domain AAA_33 PF13671.6 CQR55461.1 - 0.13 12.4 0.0 0.23 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR55461.1 - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain MeaB PF03308.16 CQR55461.1 - 0.15 11.0 0.1 0.24 10.3 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 CQR55461.1 - 0.19 11.8 0.1 0.33 11.0 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase PRK PF00485.18 CQR55461.1 - 0.23 11.2 0.2 0.34 10.6 0.2 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TetR_N PF00440.23 CQR55462.1 - 6.5e-14 51.5 0.0 1.4e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 CQR55462.1 - 0.0001 22.3 0.3 0.00021 21.3 0.2 1.6 1 1 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_11 PF16859.5 CQR55462.1 - 0.00068 19.9 0.2 0.002 18.4 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR PF13972.6 CQR55462.1 - 0.0076 16.0 0.5 0.014 15.1 0.5 1.4 1 1 0 1 1 1 1 Bacterial transcriptional repressor TetR_C_26 PF17934.1 CQR55462.1 - 0.0099 16.2 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain Coiled-coil_56 PF09813.9 CQR55462.1 - 0.067 13.2 0.7 0.58 10.2 0.1 2.3 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 56 TetR_C_6 PF13977.6 CQR55462.1 - 0.12 12.6 0.8 0.3 11.3 0.4 1.8 1 1 1 2 2 2 0 BetI-type transcriptional repressor, C-terminal MFS_1 PF07690.16 CQR55463.1 - 1.7e-58 198.2 36.1 9.6e-58 195.8 36.4 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR55463.1 - 2.3e-11 43.2 11.2 2.3e-11 43.2 11.2 2.4 2 1 0 2 2 2 1 Sugar (and other) transporter TRI12 PF06609.13 CQR55463.1 - 5.2e-08 31.8 13.0 5.2e-08 31.8 13.0 1.8 1 1 1 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.7 CQR55463.1 - 1.3e-05 24.2 16.6 4.8e-05 22.4 7.8 2.5 2 1 0 2 2 2 2 MFS_1 like family OATP PF03137.20 CQR55463.1 - 0.0056 15.0 15.0 0.018 13.4 1.1 2.9 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family LacY_symp PF01306.19 CQR55463.1 - 0.067 12.0 7.4 1.4 7.6 1.3 2.5 2 0 0 2 2 2 0 LacY proton/sugar symporter MFS_2 PF13347.6 CQR55463.1 - 0.14 10.7 24.6 0.0088 14.6 9.4 3.2 2 1 1 3 3 3 0 MFS/sugar transport protein SBP_bac_3 PF00497.20 CQR55464.1 - 6.8e-64 215.4 1.8 8.3e-64 215.1 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 CQR55464.1 - 2e-05 24.8 0.1 4.5e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 CQR55464.1 - 0.00018 21.2 0.5 0.0046 16.6 0.5 2.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 CQR55464.1 - 0.00036 20.5 0.3 0.00066 19.7 0.3 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Flu_C_NS2 PF03555.14 CQR55464.1 - 0.016 15.4 0.0 0.071 13.3 0.0 2.0 2 0 0 2 2 2 0 Influenza C non-structural protein (NS2) OAD_gamma PF04277.13 CQR55464.1 - 0.046 14.3 2.6 5.4 7.7 0.2 2.3 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain LPAM_2 PF13627.6 CQR55464.1 - 0.25 11.3 1.4 0.43 10.5 1.4 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site BPD_transp_1 PF00528.22 CQR55465.1 - 7.8e-21 74.6 18.8 1e-20 74.2 12.4 2.0 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Bac_export_3 PF01313.19 CQR55465.1 - 0.91 9.5 8.9 0.23 11.4 4.4 2.3 2 0 0 2 2 2 0 Bacterial export proteins, family 3 ABC_tran PF00005.27 CQR55466.1 - 2.1e-33 115.7 0.0 2.9e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55466.1 - 3.9e-14 53.2 0.0 1.7e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR55466.1 - 2.6e-08 33.6 0.1 3.9e-05 23.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR55466.1 - 8e-06 26.2 0.2 6.2e-05 23.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR55466.1 - 8.1e-05 23.2 0.1 0.00012 22.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR55466.1 - 0.00019 20.4 4.0 0.2 10.4 0.4 3.3 2 1 1 3 3 3 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR55466.1 - 0.00042 20.7 0.2 0.00068 20.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR55466.1 - 0.00061 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 CQR55466.1 - 0.0027 17.1 0.1 0.97 8.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_15 PF13175.6 CQR55466.1 - 0.0033 17.2 0.0 0.075 12.7 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_13 PF13166.6 CQR55466.1 - 0.0043 15.8 0.0 1.4 7.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 CQR55466.1 - 0.0046 17.1 0.1 0.0098 16.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 CQR55466.1 - 0.0084 15.9 0.3 0.014 15.1 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 CQR55466.1 - 0.0097 15.6 0.6 0.035 13.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 CQR55466.1 - 0.01 15.8 0.0 0.035 14.0 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 CQR55466.1 - 0.013 15.4 0.1 0.028 14.3 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 CQR55466.1 - 0.017 14.7 0.1 0.041 13.5 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 CQR55466.1 - 0.021 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 CQR55466.1 - 0.024 14.5 0.2 0.49 10.3 0.0 2.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 CQR55466.1 - 0.032 14.2 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR55466.1 - 0.033 13.7 0.4 0.62 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 CQR55466.1 - 0.037 14.3 0.1 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 CQR55466.1 - 0.038 13.0 0.2 0.073 12.1 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 CQR55466.1 - 0.045 14.1 1.2 0.13 12.6 1.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR55466.1 - 0.054 13.0 0.0 0.081 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 CQR55466.1 - 0.06 13.8 0.3 4.8 7.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 CQR55466.1 - 0.064 12.6 0.0 0.19 11.1 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI G-alpha PF00503.20 CQR55466.1 - 0.08 12.1 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit Rad17 PF03215.15 CQR55466.1 - 0.082 12.8 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain SbcCD_C PF13558.6 CQR55466.1 - 0.18 12.0 0.1 2 8.7 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SLH PF00395.20 CQR55467.1 - 2.5e-11 43.4 4.7 0.00011 22.1 0.1 3.5 4 0 0 4 4 4 2 S-layer homology domain RNA_pol_Rpb4 PF03874.16 CQR55467.1 - 0.15 12.4 0.1 3.9 7.8 0.0 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb4 FUR PF01475.19 CQR55468.1 - 1.7e-35 121.7 0.4 2.1e-35 121.5 0.4 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family AIM24 PF01987.17 CQR55469.1 - 3.8e-62 209.7 0.6 4.2e-62 209.5 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HTH_18 PF12833.7 CQR55471.1 - 3e-18 65.8 0.2 5.8e-18 64.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55471.1 - 5.3e-18 64.7 0.0 1.3e-10 41.0 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding_2 PF14525.6 CQR55471.1 - 0.0005 19.8 0.0 0.00089 19.0 0.0 1.3 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 CQR55471.1 - 0.02 14.8 0.0 0.045 13.7 0.0 1.5 1 1 0 1 1 1 0 AraC-like ligand binding domain AP_endonuc_2 PF01261.24 CQR55472.1 - 4.4e-21 75.3 0.1 8.1e-21 74.4 0.1 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 CQR55472.1 - 0.058 12.2 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) GFO_IDH_MocA PF01408.22 CQR55473.1 - 2.8e-30 105.6 0.2 4.6e-30 104.9 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55473.1 - 1e-07 31.9 0.0 3.6e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR55473.1 - 0.00036 21.2 0.1 0.00086 19.9 0.1 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 CQR55473.1 - 0.0063 16.8 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 CQR55473.1 - 0.036 14.5 0.0 0.094 13.2 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 CQR55473.1 - 0.13 12.8 0.2 0.41 11.2 0.1 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_2 PF13477.6 CQR55473.1 - 0.17 11.9 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like GFO_IDH_MocA PF01408.22 CQR55474.1 - 7.3e-26 91.4 0.1 1.6e-25 90.3 0.1 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 CQR55474.1 - 0.00093 19.8 0.1 0.0032 18.1 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 CQR55474.1 - 0.00095 19.2 0.1 0.0025 17.8 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain PglD_N PF17836.1 CQR55474.1 - 0.0056 17.3 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 PglD N-terminal domain IlvN PF07991.12 CQR55474.1 - 0.0076 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 CQR55474.1 - 0.014 16.1 0.0 0.026 15.2 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain DapB_N PF01113.20 CQR55474.1 - 0.039 14.1 0.1 0.079 13.1 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus BCA_ABC_TP_C PF12399.8 CQR55474.1 - 0.078 12.9 0.3 9.8 6.2 0.0 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Semialdhyde_dh PF01118.24 CQR55474.1 - 0.1 13.1 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 CQR55475.1 - 1.7e-30 106.0 0.0 2.6e-30 105.5 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 CQR55475.1 - 1.4e-22 79.2 0.2 3.4e-22 77.9 0.2 1.7 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus APH PF01636.23 CQR55476.1 - 4.4e-23 82.5 0.0 5.8e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 CQR55476.1 - 5.1e-12 45.6 0.0 6.2e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 Fructosamine kinase RIO1 PF01163.22 CQR55476.1 - 0.0004 20.0 0.0 0.091 12.4 0.0 2.2 2 0 0 2 2 2 2 RIO1 family Haspin_kinase PF12330.8 CQR55476.1 - 0.057 12.4 0.0 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Haspin like kinase domain HXXEE PF13787.6 CQR55477.1 - 6.6e-20 72.0 8.8 6.6e-20 72.0 8.8 1.5 2 0 0 2 2 2 1 Protein of unknown function with HXXEE motif Fis1_TPR_N PF14852.6 CQR55477.1 - 0.038 13.7 0.1 0.07 12.8 0.1 1.4 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat DUF2070 PF09843.9 CQR55477.1 - 2 6.6 8.2 2.4 6.3 8.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TMEM247 PF15444.6 CQR55477.1 - 3.1 7.8 4.3 4.3 7.3 4.3 1.2 1 0 0 1 1 1 0 Transmembrane protein 247 ABC_tran PF00005.27 CQR55478.1 - 1.2e-28 100.3 0.0 1.7e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR55478.1 - 6.8e-13 48.9 0.0 1.2e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR55478.1 - 2.8e-06 27.4 0.1 5.9e-05 23.0 0.0 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR55478.1 - 2.1e-05 24.1 0.1 3.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR55478.1 - 0.0038 17.5 0.2 0.11 12.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR55478.1 - 0.0073 16.0 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR55478.1 - 0.012 16.0 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 CQR55478.1 - 0.036 13.6 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 CQR55478.1 - 0.052 13.0 0.3 2.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 CQR55478.1 - 0.088 12.5 0.4 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP-synt_ab PF00006.25 CQR55478.1 - 0.19 11.3 0.4 0.37 10.4 0.1 1.8 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 CQR55478.1 - 0.23 11.9 1.0 2.1 8.8 0.1 2.2 1 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Glyco_hydro_43 PF04616.14 CQR55479.1 - 7.5e-37 127.2 0.3 4.9e-34 118.0 0.3 2.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C PF16369.5 CQR55479.1 - 1.3e-27 96.4 0.4 3.1e-27 95.2 0.1 1.8 2 0 0 2 2 2 1 C-terminal lipocalin-like domain ketoacyl-synt PF00109.26 CQR55480.1 - 1.1e-60 205.4 1.4 1.8e-60 204.7 0.5 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 CQR55480.1 - 3.3e-35 120.7 0.6 5.8e-35 119.9 0.6 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 CQR55480.1 - 0.00096 18.6 0.3 0.0056 16.1 0.2 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain KAsynt_C_assoc PF16197.5 CQR55480.1 - 0.023 15.2 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 Ketoacyl-synthetase C-terminal extension MLTR_LBD PF17765.1 CQR55481.1 - 6.1e-38 130.6 0.0 8.7e-38 130.1 0.0 1.2 1 0 0 1 1 1 1 MmyB-like transcription regulator ligand binding domain HTH_31 PF13560.6 CQR55481.1 - 1.3e-16 60.6 0.8 3.3e-16 59.4 0.8 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR55481.1 - 0.067 13.3 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix Citrate_synt PF00285.21 CQR55482.1 - 3.6e-113 378.3 0.0 4.2e-113 378.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain AzlD PF05437.12 CQR55482.1 - 0.036 14.2 0.3 0.036 14.2 0.3 2.0 3 0 0 3 3 3 0 Branched-chain amino acid transport protein (AzlD) Exo_endo_phos PF03372.23 CQR55484.1 - 3.8e-23 82.2 0.0 4.4e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 CQR55484.1 - 8.6e-07 28.8 0.0 2.2e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase COMM_domain PF07258.14 CQR55484.1 - 0.19 11.9 0.0 0.45 10.7 0.0 1.6 1 0 0 1 1 1 0 COMM domain Beta-lactamase PF00144.24 CQR55485.1 - 2.4e-33 115.8 0.1 4e-33 115.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase VanZ PF04892.12 CQR55486.1 - 1.2e-21 77.6 4.1 1.2e-21 77.6 4.1 2.3 2 1 1 3 3 3 1 VanZ like family RDD PF06271.12 CQR55486.1 - 4.4 7.5 26.8 2.5 8.3 19.8 3.6 2 1 0 2 2 2 0 RDD family DUF2981 PF11200.8 CQR55488.1 - 0.88 9.3 10.6 0.99 9.1 10.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) Response_reg PF00072.24 CQR55489.1 - 4e-30 104.3 0.0 7.9e-30 103.3 0.0 1.5 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55489.1 - 2e-23 82.2 0.0 3.4e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR55490.1 - 2.8e-17 63.3 0.0 1.1e-16 61.4 0.0 1.9 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55490.1 - 4.9e-13 48.9 2.0 2.6e-12 46.6 0.2 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55490.1 - 3.6e-08 33.6 0.0 7.6e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR55490.1 - 0.0022 17.8 0.0 0.0045 16.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55490.1 - 0.05 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain NOD PF06816.13 CQR55490.1 - 0.1 12.2 0.1 0.38 10.4 0.1 1.9 1 0 0 1 1 1 0 NOTCH protein Peptidase_M29 PF02073.15 CQR55491.1 - 7.4e-164 545.3 0.0 8.3e-164 545.2 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Sigma70_r2 PF04542.14 CQR55492.1 - 7e-14 51.4 1.2 1.3e-13 50.5 1.2 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR55492.1 - 2.3e-12 46.4 0.0 1.7e-11 43.6 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55492.1 - 4.8e-11 42.0 0.0 7.5e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR55492.1 - 0.0019 17.9 0.1 0.0086 15.8 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 CQR55492.1 - 0.037 13.8 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.6 CQR55492.1 - 0.087 12.9 0.0 0.29 11.3 0.0 1.8 2 0 0 2 2 2 0 MerR HTH family regulatory protein DUF4179 PF13786.6 CQR55493.1 - 6.6e-10 39.3 0.1 2e-09 37.8 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4179) DUF5643 PF18705.1 CQR55493.1 - 0.00044 20.2 0.6 0.038 14.0 0.0 2.9 2 1 0 2 2 2 1 Family of unknown function (DUF5643) PrcB_C PF14343.6 CQR55493.1 - 0.007 16.5 0.1 0.066 13.3 0.1 2.3 2 0 0 2 2 2 1 PrcB C-terminal CbtA PF09490.10 CQR55493.1 - 0.012 15.4 0.1 0.44 10.3 0.1 2.2 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) DUF4854 PF16146.5 CQR55493.1 - 0.023 15.0 0.4 0.053 13.9 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4854) Acetyltransf_1 PF00583.25 CQR55494.1 - 1e-08 35.4 0.0 1.4e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55494.1 - 0.019 15.4 0.0 0.031 14.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR55494.1 - 0.069 13.8 0.0 0.089 13.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SBP_bac_8 PF13416.6 CQR55495.1 - 5e-51 174.2 15.7 6.9e-51 173.7 15.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR55495.1 - 2.7e-49 168.9 15.5 3.8e-49 168.3 15.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR55495.1 - 4.2e-07 30.0 0.2 1.1e-06 28.6 0.2 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR55495.1 - 7.7e-06 25.5 2.8 0.014 14.9 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein DUF4969 PF16339.5 CQR55495.1 - 0.00057 20.2 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4969) BPD_transp_1 PF00528.22 CQR55496.1 - 1.3e-13 51.1 29.2 1.3e-13 51.1 29.2 2.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR55497.1 - 3.6e-18 66.0 19.2 3.6e-18 66.0 19.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peripla_BP_3 PF13377.6 CQR55498.1 - 1.4e-38 132.8 0.0 3.2e-38 131.7 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR55498.1 - 5.6e-28 98.2 0.0 7e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR55498.1 - 2e-17 62.7 2.1 2e-17 62.7 0.9 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR55498.1 - 3.8e-14 52.9 0.0 5.6e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain Ribosomal_L32e PF01655.18 CQR55498.1 - 0.022 15.2 0.1 0.049 14.1 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein L32 R2K_2 PF18299.1 CQR55498.1 - 0.067 13.0 0.0 0.67 9.8 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain, R2K clade family 2 Glyco_hydro_3 PF00933.21 CQR55499.1 - 3.7e-77 259.8 0.0 5.4e-77 259.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR55499.1 - 5.1e-53 180.1 0.0 7.3e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 CQR55499.1 - 3.3e-16 59.2 0.0 9.8e-16 57.6 0.0 1.8 2 0 0 2 2 2 1 Fibronectin type III-like domain Ig_GlcNase PF18368.1 CQR55499.1 - 0.021 15.0 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain Glyco_hydro_36 PF17167.4 CQR55500.1 - 6.1e-07 28.5 0.1 1.1e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 CQR55500.1 - 0.071 12.5 0.3 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase family 36 tRNA_edit PF04073.15 CQR55501.1 - 0.045 13.8 0.0 0.057 13.5 0.0 1.2 1 1 0 1 1 1 0 Aminoacyl-tRNA editing domain tRNA-synt_1b PF00579.25 CQR55502.1 - 5.2e-56 190.1 0.0 6.7e-56 189.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF5050 PF16472.5 CQR55503.1 - 2.3e-12 46.8 15.0 1.4e-07 31.1 5.2 3.3 2 1 1 3 3 3 2 Domain of unknown function (DUF5050) F5_F8_type_C PF00754.25 CQR55505.1 - 2.4e-07 30.9 0.2 6.3e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 F5/8 type C domain NADase_NGA PF07461.11 CQR55505.1 - 0.0041 16.1 0.2 0.0059 15.6 0.2 1.3 1 0 0 1 1 1 1 Nicotine adenine dinucleotide glycohydrolase (NADase) BACON PF13004.7 CQR55505.1 - 0.67 10.0 2.9 17 5.5 0.0 3.7 4 0 0 4 4 4 0 Putative binding domain, N-terminal SUFU PF05076.13 CQR55506.1 - 7.3e-43 146.5 0.0 1e-42 146.1 0.0 1.2 1 0 0 1 1 1 1 Suppressor of fused protein (SUFU) DUF4261 PF14080.6 CQR55506.1 - 0.0028 17.7 0.0 0.013 15.6 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4261) TelA PF05816.11 CQR55507.1 - 1.8e-73 247.5 19.3 2.4e-73 247.1 19.3 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) Fib_alpha PF08702.10 CQR55507.1 - 0.12 12.5 22.7 0.077 13.2 3.0 4.0 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.9 CQR55507.1 - 1.3 9.7 8.6 2.9 8.6 0.0 3.8 2 2 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) VWA PF00092.28 CQR55508.1 - 7.8e-18 65.3 0.2 1.4e-17 64.4 0.2 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain SBP_bac_11 PF13531.6 CQR55508.1 - 1.2e-13 51.4 0.1 2.2e-13 50.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VWA_2 PF13519.6 CQR55508.1 - 8.7e-10 39.2 0.0 1.9e-09 38.1 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 CQR55508.1 - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain TMF_TATA_bd PF12325.8 CQR55509.1 - 0.013 15.7 0.6 0.025 14.8 0.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding LRV PF01816.17 CQR55511.1 - 0.062 13.7 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 Leucine rich repeat variant EamA PF00892.20 CQR55512.1 - 2.1e-20 73.3 37.3 9.3e-15 55.0 19.7 2.6 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 CQR55512.1 - 7.1e-05 22.3 3.9 0.024 14.0 0.6 2.1 2 0 0 2 2 2 2 Triose-phosphate Transporter family CRT-like PF08627.10 CQR55512.1 - 0.0017 17.4 0.5 0.0043 16.0 0.5 1.7 1 0 0 1 1 1 1 CRT-like, chloroquine-resistance transporter-like Frag1 PF10277.9 CQR55512.1 - 0.0081 15.7 3.8 0.0087 15.6 1.8 2.2 1 1 1 2 2 2 1 Frag1/DRAM/Sfk1 family LapA_dom PF06305.11 CQR55512.1 - 0.08 12.8 0.3 0.08 12.8 0.3 5.1 7 1 1 8 8 8 0 Lipopolysaccharide assembly protein A domain Abhydrolase_1 PF00561.20 CQR55513.1 - 1.1e-23 84.2 0.0 1.3e-21 77.4 0.0 2.0 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR55513.1 - 3.2e-15 57.3 0.0 4.1e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR55513.1 - 1.6e-11 43.9 0.0 2e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 PGAP1 PF07819.13 CQR55513.1 - 9.3e-05 22.2 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 PGAP1-like protein Ndr PF03096.14 CQR55513.1 - 0.00091 18.0 0.0 0.0016 17.2 0.0 1.3 1 0 0 1 1 1 1 Ndr family Lipase_3 PF01764.25 CQR55513.1 - 0.0013 18.6 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_5 PF12695.7 CQR55513.1 - 0.0018 18.0 0.3 0.1 12.4 0.1 2.3 1 1 1 2 2 2 1 Alpha/beta hydrolase family Thioesterase PF00975.20 CQR55513.1 - 0.0019 18.4 0.0 0.0047 17.1 0.0 1.6 2 0 0 2 2 2 1 Thioesterase domain Esterase PF00756.20 CQR55513.1 - 0.057 13.0 0.9 0.2 11.3 0.9 1.9 1 1 0 1 1 1 0 Putative esterase AXE1 PF05448.12 CQR55513.1 - 0.06 12.0 0.3 6.6 5.3 0.0 2.1 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) Chlorophyllase2 PF12740.7 CQR55513.1 - 0.097 11.6 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase enzyme UPF0227 PF05728.12 CQR55513.1 - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Chlorophyllase PF07224.11 CQR55513.1 - 0.12 11.3 0.0 0.24 10.4 0.0 1.4 1 1 0 1 1 1 0 Chlorophyllase DUF2974 PF11187.8 CQR55513.1 - 0.14 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DUF2920 PF11144.8 CQR55513.1 - 0.3 10.2 0.9 0.51 9.4 0.2 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2920) GerE PF00196.19 CQR55515.1 - 4.9e-16 58.0 0.3 1.1e-15 56.9 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR55515.1 - 0.012 15.2 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 FlgO PF17680.1 CQR55515.1 - 0.071 12.8 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 FlgO protein Sigma70_ECF PF07638.11 CQR55515.1 - 0.095 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_23 PF13384.6 CQR55515.1 - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF4969 PF16339.5 CQR55516.1 - 0.026 14.9 0.4 0.16 12.3 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4969) VirArc_Nuclease PF12187.8 CQR55516.1 - 0.055 13.0 0.8 0.096 12.2 0.2 1.6 2 0 0 2 2 2 0 Viral/Archaeal nuclease PilZ PF07238.14 CQR55517.1 - 8.6e-08 32.4 0.0 1e-07 32.2 0.0 1.2 1 0 0 1 1 1 1 PilZ domain DinB PF05163.12 CQR55518.1 - 2e-27 96.1 0.0 3.3e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 DinB family DinB_2 PF12867.7 CQR55518.1 - 0.041 14.4 0.0 0.076 13.5 0.0 1.5 1 1 0 1 1 1 0 DinB superfamily ELFV_dehydrog PF00208.21 CQR55519.1 - 1.2e-88 297.0 0.8 2.4e-88 296.0 0.9 1.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 CQR55519.1 - 3.3e-51 172.6 0.0 7.7e-51 171.4 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AlaDh_PNT_C PF01262.21 CQR55519.1 - 0.0055 16.0 0.3 0.021 14.2 0.1 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAPDH_C PF16654.5 CQR55520.1 - 1.3e-73 245.9 0.0 1.8e-73 245.5 0.0 1.2 1 0 0 1 1 1 1 Diaminopimelic acid dehydrogenase C-terminal domain Gp_dh_N PF00044.24 CQR55520.1 - 0.00012 22.3 0.0 0.00027 21.2 0.0 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 CQR55520.1 - 0.00013 22.0 0.0 0.0003 20.9 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 CQR55520.1 - 0.024 15.5 0.0 0.058 14.2 0.0 1.6 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold LCM PF04072.14 CQR55521.1 - 2.6e-38 131.8 0.1 3.3e-38 131.5 0.1 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Peptidase_U4 PF03419.13 CQR55522.1 - 0.0023 17.3 2.0 0.0028 17.0 2.0 1.1 1 0 0 1 1 1 1 Sporulation factor SpoIIGA DUF2919 PF11143.8 CQR55522.1 - 1.7 9.0 7.6 1.9 8.8 4.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2919) MFS_1 PF07690.16 CQR55523.1 - 0.0022 17.0 0.2 0.0025 16.8 0.2 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR55523.1 - 0.0061 15.5 0.1 0.0062 15.4 0.1 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 CQR55524.1 - 6.8e-12 45.0 13.9 8.2e-12 44.7 13.9 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR55524.1 - 8.5e-09 34.7 1.4 1.1e-08 34.3 1.1 1.3 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 CQR55524.1 - 2.3e-06 26.7 2.4 2.5e-06 26.6 2.4 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.6 CQR55524.1 - 4.1e-05 22.3 9.1 4.6e-05 22.2 9.1 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein Esterase PF00756.20 CQR55526.1 - 3.7e-30 105.4 0.0 5.4e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 CQR55526.1 - 0.0096 15.4 0.1 0.016 14.6 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Sensor PF13796.6 CQR55527.1 - 6.5e-27 94.6 5.2 8.4e-27 94.2 5.2 1.1 1 0 0 1 1 1 1 Putative sensor DUF975 PF06161.11 CQR55529.1 - 1.8e-31 109.8 8.3 1.2e-28 100.5 7.5 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF975) UPF0259 PF06790.11 CQR55529.1 - 0.36 10.5 7.2 0.13 12.0 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0259) UL42 PF17638.2 CQR55529.1 - 0.57 10.2 1.7 0.63 10.0 0.1 1.8 2 0 0 2 2 2 0 HCMV UL42 TetR_N PF00440.23 CQR55530.1 - 6.2e-15 54.7 0.7 1.2e-14 53.8 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family PBP_dimer PF03717.15 CQR55530.1 - 0.036 14.4 0.2 0.084 13.2 0.1 1.6 1 1 1 2 2 2 0 Penicillin-binding Protein dimerisation domain TetR_C_24 PF17932.1 CQR55530.1 - 0.097 12.9 0.0 0.37 11.1 0.0 2.1 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Polyketide_cyc2 PF10604.9 CQR55531.1 - 3.2e-17 63.1 0.0 3.6e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 CQR55531.1 - 0.0042 17.3 0.0 0.0046 17.2 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Flavodoxin_2 PF02525.17 CQR55532.1 - 1.3e-41 142.5 0.1 1.6e-41 142.3 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR55532.1 - 7e-05 22.6 0.0 0.00013 21.7 0.0 1.6 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Sec16_C PF12931.7 CQR55532.1 - 0.1 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Sec23-binding domain of Sec16 Rhodanese PF00581.20 CQR55533.1 - 2.4e-41 140.6 0.0 8.8e-21 74.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain zf-HC2 PF13490.6 CQR55534.1 - 6.9e-10 39.0 4.0 1.1e-09 38.3 4.0 1.4 1 0 0 1 1 1 1 Putative zinc-finger Sigma70_r2 PF04542.14 CQR55535.1 - 2e-11 43.5 0.6 3.7e-11 42.6 0.1 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR55535.1 - 5.3e-08 32.4 0.0 1.1e-07 31.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55535.1 - 0.00076 19.0 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 APH PF01636.23 CQR55536.1 - 8e-20 71.8 0.6 2.3e-19 70.3 0.2 1.7 1 1 1 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 CQR55536.1 - 0.00032 20.4 0.0 0.0005 19.7 0.0 1.2 1 0 0 1 1 1 1 Choline/ethanolamine kinase Kdo PF06293.14 CQR55536.1 - 0.0016 17.8 0.0 0.0035 16.7 0.0 1.5 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF1679 PF07914.11 CQR55536.1 - 0.018 13.9 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) EcKinase PF02958.20 CQR55536.1 - 0.021 14.1 0.0 0.041 13.2 0.0 1.4 1 1 0 1 1 1 0 Ecdysteroid kinase Pkinase_Tyr PF07714.17 CQR55536.1 - 0.11 11.8 0.0 0.22 10.7 0.0 1.5 2 0 0 2 2 2 0 Protein tyrosine kinase Pkinase PF00069.25 CQR55536.1 - 0.16 11.3 0.1 1.6 8.0 0.0 2.0 2 0 0 2 2 2 0 Protein kinase domain DHOase PF12890.7 CQR55537.1 - 0.12 12.3 0.6 1.2 9.1 0.6 2.0 1 1 0 1 1 1 0 Dihydro-orotase-like ABC_tran PF00005.27 CQR55538.1 - 2.9e-31 108.8 0.0 4.8e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55538.1 - 7.7e-12 45.6 0.2 1.1e-06 28.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 CQR55538.1 - 0.0021 18.0 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain DUF4162 PF13732.6 CQR55538.1 - 0.0047 17.6 0.1 0.012 16.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 CQR55538.1 - 0.014 15.1 0.0 1.9 8.1 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 CQR55538.1 - 0.018 15.5 0.3 0.03 14.8 0.3 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 CQR55538.1 - 0.018 14.7 0.5 0.083 12.6 0.5 2.2 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR55538.1 - 0.039 14.2 0.0 0.084 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 CQR55538.1 - 0.086 12.5 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 CQR55538.1 - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 CQR55538.1 - 0.16 12.2 1.2 2.6 8.3 0.2 2.3 2 0 0 2 2 2 0 AAA domain ABC2_membrane_4 PF12730.7 CQR55539.1 - 5e-15 55.9 14.3 5e-15 55.9 14.3 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR55539.1 - 1.8e-11 43.9 21.5 1.8e-11 43.9 21.5 2.9 1 1 2 3 3 3 2 ABC-2 family transporter protein DUF2705 PF10920.8 CQR55539.1 - 8.4e-05 22.0 10.4 0.00013 21.3 10.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2705) GntR PF00392.21 CQR55540.1 - 2.8e-15 55.7 0.1 4.7e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 CQR55540.1 - 8.5e-07 29.2 0.0 1.4e-06 28.5 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 CQR55540.1 - 0.0001 22.2 0.0 0.00017 21.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 CQR55540.1 - 0.00011 22.0 0.0 0.00019 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_41 PF14502.6 CQR55540.1 - 0.00019 21.1 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 CQR55540.1 - 0.00047 20.3 0.0 0.00092 19.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 CQR55540.1 - 0.00078 19.2 0.1 0.0056 16.4 0.0 2.2 2 0 0 2 2 2 1 LexA DNA binding domain HTH_20 PF12840.7 CQR55540.1 - 0.002 18.2 0.0 0.0036 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 CQR55540.1 - 0.0023 17.8 0.2 0.0067 16.4 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 CQR55540.1 - 0.004 16.9 0.0 0.039 13.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Sigma70_r3 PF04539.16 CQR55540.1 - 0.0096 16.0 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_DeoR PF08220.12 CQR55540.1 - 0.011 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 CQR55540.1 - 0.015 15.1 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 CQR55540.1 - 0.016 14.8 0.0 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR55540.1 - 0.026 14.5 0.0 0.054 13.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain E3_binding PF02817.17 CQR55540.1 - 0.03 14.7 0.0 0.053 13.9 0.0 1.4 1 0 0 1 1 1 0 e3 binding domain TrmB PF01978.19 CQR55540.1 - 0.045 13.6 0.2 0.17 11.8 0.0 1.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 CQR55540.1 - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TFIIE_alpha PF02002.17 CQR55540.1 - 0.088 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_AsnC-type PF13404.6 CQR55540.1 - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ABC_tran PF00005.27 CQR55541.1 - 2.6e-22 79.8 0.0 4.6e-22 79.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55541.1 - 3.8e-11 43.4 0.6 0.00022 21.2 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DLIC PF05783.11 CQR55541.1 - 0.014 14.2 0.2 0.02 13.7 0.2 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 CQR55541.1 - 0.02 14.6 0.2 0.031 14.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR55541.1 - 0.022 14.5 0.6 0.039 13.7 0.6 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR55541.1 - 0.023 15.2 0.9 0.036 14.6 0.4 1.5 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 CQR55541.1 - 0.037 13.5 0.6 1.6 8.1 0.3 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 CQR55541.1 - 0.04 12.6 0.1 0.058 12.0 0.1 1.1 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR55541.1 - 0.059 13.3 0.2 0.095 12.6 0.2 1.3 1 0 0 1 1 1 0 NACHT domain DUF3584 PF12128.8 CQR55541.1 - 0.12 9.9 0.3 0.15 9.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.22 CQR55541.1 - 0.15 11.2 0.5 0.32 10.1 0.5 1.5 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 CQR55541.1 - 0.2 11.2 0.4 0.34 10.5 0.4 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 CQR55541.1 - 0.22 11.9 0.9 0.42 11.1 0.1 1.9 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 CQR55541.1 - 0.23 11.4 0.4 0.44 10.4 0.4 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 CQR55541.1 - 0.25 11.4 1.3 1.7 8.7 0.2 2.3 2 0 0 2 2 2 0 AAA domain PilZ PF07238.14 CQR55543.1 - 5.5e-09 36.3 0.0 6.5e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 PilZ domain RuvA_N PF01330.21 CQR55543.1 - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 RuvA N terminal domain Phage_holin_5_1 PF06946.11 CQR55545.1 - 1.2e-09 38.4 0.7 1.3e-09 38.3 0.7 1.0 1 0 0 1 1 1 1 Bacteriophage A118-like holin, Hol118 SpoVAB PF13782.6 CQR55545.1 - 0.0051 17.1 1.2 0.0058 16.9 0.7 1.3 1 1 0 1 1 1 1 Stage V sporulation protein AB Phage_holin_5_2 PF16079.5 CQR55545.1 - 0.0058 16.9 0.5 0.0082 16.5 0.5 1.2 1 0 0 1 1 1 1 Phage holin family Hol44, in holin superfamily V BaxI_1 PF12811.7 CQR55545.1 - 0.014 14.9 2.8 0.015 14.9 2.8 1.1 1 0 0 1 1 1 0 Bax inhibitor 1 like TMEM100 PF16311.5 CQR55545.1 - 0.16 11.6 0.7 0.2 11.2 0.7 1.4 1 1 0 1 1 1 0 Transmembrane protein 100 FtsK_4TM PF13491.6 CQR55547.1 - 0.047 13.4 2.4 0.045 13.4 2.4 1.0 1 0 0 1 1 1 0 4TM region of DNA translocase FtsK/SpoIIIE YjcZ_2 PF09680.10 CQR55547.1 - 0.13 12.0 8.2 0.26 11.0 8.2 1.5 1 0 0 1 1 1 0 Family of unknown function Hydrolase_4 PF12146.8 CQR55548.1 - 9e-13 48.0 0.5 8.1e-12 44.9 0.1 2.4 2 1 0 2 2 2 1 Serine aminopeptidase, S33 DLH PF01738.18 CQR55548.1 - 9.7e-13 48.2 0.2 1.8e-05 24.4 0.1 2.6 2 1 1 3 3 3 2 Dienelactone hydrolase family DUF3887 PF13026.6 CQR55548.1 - 4.1e-12 46.8 0.0 8.3e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) Cu_amine_oxidN1 PF07833.11 CQR55548.1 - 1.1e-10 41.8 0.0 3.4e-10 40.3 0.0 1.9 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain Peptidase_S9 PF00326.21 CQR55548.1 - 1.2e-10 41.2 0.2 5e-08 32.7 0.2 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 CQR55548.1 - 1.3e-09 39.0 0.1 3.1e-09 37.8 0.1 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 CQR55548.1 - 0.00029 20.6 0.0 0.0011 18.8 0.0 2.0 2 0 0 2 2 2 1 Alpha/beta hydrolase family PGAP1 PF07819.13 CQR55548.1 - 0.00047 19.9 0.0 0.00078 19.2 0.0 1.3 1 0 0 1 1 1 1 PGAP1-like protein AXE1 PF05448.12 CQR55548.1 - 0.006 15.3 0.1 0.75 8.4 0.0 2.6 2 1 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 CQR55548.1 - 0.0069 16.3 1.7 0.035 14.0 0.9 2.4 2 1 0 2 2 2 1 alpha/beta hydrolase fold Esterase_phd PF10503.9 CQR55548.1 - 0.017 14.7 0.7 0.041 13.4 0.5 1.8 2 0 0 2 2 2 0 Esterase PHB depolymerase PALP PF00291.25 CQR55549.1 - 1.1e-66 225.2 1.8 1.3e-66 225.0 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pribosyltran PF00156.27 CQR55549.1 - 0.15 11.6 0.5 0.71 9.4 0.1 2.2 2 1 0 2 2 2 0 Phosphoribosyl transferase domain BLOC1_2 PF10046.9 CQR55550.1 - 0.00015 22.0 8.0 0.082 13.2 0.4 2.0 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 CQR55550.1 - 0.00015 22.2 2.0 0.00015 22.2 2.0 2.7 1 1 1 2 2 2 1 Protein of unknown function DUF16 LPP PF04728.13 CQR55550.1 - 0.0002 21.7 1.2 0.00032 21.0 0.4 1.8 1 1 1 2 2 2 1 Lipoprotein leucine-zipper CENP-F_leu_zip PF10473.9 CQR55550.1 - 0.0012 18.9 16.6 0.0015 18.5 16.6 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 CQR55550.1 - 0.0013 18.8 15.1 0.0052 16.8 6.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) DUF2730 PF10805.8 CQR55550.1 - 0.0086 16.2 2.4 0.0086 16.2 2.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) Spc7 PF08317.11 CQR55550.1 - 0.015 14.2 12.1 0.049 12.5 11.2 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein ATG16 PF08614.11 CQR55550.1 - 0.017 15.4 7.7 0.017 15.4 7.7 1.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) EMP24_GP25L PF01105.24 CQR55550.1 - 0.021 14.8 9.2 0.17 11.8 9.0 2.1 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD ISG65-75 PF11727.8 CQR55550.1 - 0.03 13.6 6.4 0.057 12.7 6.4 1.4 1 1 0 1 1 1 0 Invariant surface glycoprotein NPV_P10 PF05531.12 CQR55550.1 - 0.033 14.7 9.7 0.27 11.7 9.3 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF3629 PF12302.8 CQR55550.1 - 0.052 13.0 6.8 0.064 12.7 6.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3629) DUF812 PF05667.11 CQR55550.1 - 0.06 12.2 15.0 0.073 11.9 15.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Fez1 PF06818.15 CQR55550.1 - 0.06 13.8 9.2 0.08 13.4 9.2 1.2 1 0 0 1 1 1 0 Fez1 TPR_MLP1_2 PF07926.12 CQR55550.1 - 0.061 13.4 9.4 0.41 10.7 8.1 2.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein YabA PF06156.13 CQR55550.1 - 0.098 13.3 8.7 0.12 13.0 5.3 2.1 1 1 1 2 2 2 0 Initiation control protein YabA APG6_N PF17675.1 CQR55550.1 - 0.12 12.9 5.4 0.18 12.4 5.4 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF2968 PF11180.8 CQR55550.1 - 0.3 10.7 8.2 0.28 10.8 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) Golgin_A5 PF09787.9 CQR55550.1 - 0.46 9.9 17.7 0.53 9.7 17.7 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 TMPIT PF07851.13 CQR55550.1 - 0.59 9.3 6.7 0.7 9.1 6.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein Fib_alpha PF08702.10 CQR55550.1 - 0.73 10.0 16.0 0.89 9.7 14.8 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 CQR55550.1 - 0.99 9.5 11.2 1.2 9.2 11.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Allexi_40kDa PF05549.11 CQR55550.1 - 1.2 8.6 6.4 1.1 8.6 4.6 1.5 1 1 0 1 1 1 0 Allexivirus 40kDa protein V_ATPase_I PF01496.19 CQR55550.1 - 1.3 6.8 8.5 1.4 6.8 8.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family COG2 PF06148.11 CQR55550.1 - 1.8 8.6 12.7 11 6.1 12.1 2.1 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 SpecificRecomb PF10136.9 CQR55550.1 - 2.5 6.3 8.9 2.8 6.1 8.9 1.0 1 0 0 1 1 1 0 Site-specific recombinase FlaC_arch PF05377.11 CQR55550.1 - 5.2 7.5 17.0 9.5e+02 0.3 16.7 3.2 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 CQR55550.1 - 6.2 7.5 12.1 0.73 10.5 2.2 3.0 2 1 0 2 2 2 0 SlyX RNA_pol_Rpb1_5 PF04998.17 CQR55550.1 - 8.4 5.7 8.6 10 5.4 8.6 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 5 DUF16 PF01519.16 CQR55551.1 - 0.067 13.7 6.1 2.3 8.7 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF1664 PF07889.12 CQR55551.1 - 0.07 13.2 2.0 0.076 13.1 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) XhlA PF10779.9 CQR55551.1 - 0.41 10.9 5.3 1.5 9.1 5.3 2.0 1 1 0 1 1 1 0 Haemolysin XhlA Cons_hypoth95 PF03602.15 CQR55553.1 - 2.3e-57 193.6 0.0 2.6e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 CQR55553.1 - 8e-09 35.3 0.0 8.9e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 CQR55553.1 - 1.1e-06 29.3 0.0 1.6e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR55553.1 - 2.7e-06 27.3 0.0 3.1e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 CQR55553.1 - 3.5e-06 26.4 0.0 4.4e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase PrmA PF06325.13 CQR55553.1 - 1.1e-05 25.0 0.0 1.6e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MethyltransfD12 PF02086.15 CQR55553.1 - 1.3e-05 25.1 0.0 0.069 12.8 0.0 2.1 1 1 1 2 2 2 2 D12 class N6 adenine-specific DNA methyltransferase RsmJ PF04378.13 CQR55553.1 - 2e-05 24.0 0.0 2.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ Methyltransf_15 PF09445.10 CQR55553.1 - 5.5e-05 22.8 0.0 8.5e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 CQR55553.1 - 0.00045 19.9 0.7 0.0075 16.0 0.7 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Spermine_synth PF01564.17 CQR55553.1 - 0.00046 19.6 0.0 0.00061 19.3 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_24 PF13578.6 CQR55553.1 - 0.00081 20.4 0.0 0.0012 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 CQR55553.1 - 0.0044 16.2 0.0 0.0054 16.0 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 CQR55553.1 - 0.017 14.9 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_3 PF01596.17 CQR55553.1 - 0.075 12.2 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase CTP_transf_like PF01467.26 CQR55554.1 - 8.2e-21 74.7 0.0 9.8e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 CQR55554.1 - 7.3e-07 29.0 0.0 1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Citrate lyase ligase C-terminal domain OSCP PF00213.18 CQR55554.1 - 0.05 13.7 0.1 0.064 13.4 0.1 1.3 1 0 0 1 1 1 0 ATP synthase delta (OSCP) subunit Gate PF07670.14 CQR55555.1 - 4.2e-05 23.8 0.7 4.2e-05 23.8 0.7 3.0 2 2 0 2 2 2 1 Nucleoside recognition DUF4381 PF14316.6 CQR55555.1 - 1.2 9.4 7.5 0.47 10.7 2.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) Lon_C PF05362.13 CQR55556.1 - 2.7e-13 50.0 0.2 4.6e-13 49.2 0.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain PDZ_2 PF13180.6 CQR55556.1 - 3.8e-07 30.3 0.4 9.3e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 PDZ domain PDZ_6 PF17820.1 CQR55556.1 - 0.0023 17.7 0.0 0.0069 16.2 0.0 1.8 1 0 0 1 1 1 1 PDZ domain HIGH_NTase1 PF05636.11 CQR55557.1 - 7.4e-119 397.5 0.0 9e-119 397.2 0.0 1.0 1 0 0 1 1 1 1 HIGH Nucleotidyl Transferase CTP_transf_like PF01467.26 CQR55557.1 - 3.2e-05 24.1 0.0 6.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase-like YceD PF02620.17 CQR55558.1 - 9e-28 96.8 1.6 9e-28 96.8 1.6 1.5 2 0 0 2 2 2 1 Large ribosomal RNA subunit accumulation protein YceD Ribosomal_L32p PF01783.23 CQR55559.1 - 3.2e-26 91.3 4.9 3.4e-26 91.2 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family HypA PF01155.19 CQR55559.1 - 0.017 15.1 0.7 0.018 15.1 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 CQR55559.1 - 0.16 12.1 2.8 1.5 9.0 3.0 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-ACC PF17848.1 CQR55559.1 - 0.95 9.6 0.3 0.95 9.6 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain RecR PF02132.15 CQR55559.1 - 0.98 9.0 0.0 0.98 9.0 0.0 2.3 2 1 1 3 3 3 0 RecR protein HTH_DeoR PF08220.12 CQR55560.1 - 0.00077 19.2 0.8 0.0013 18.4 0.8 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR55560.1 - 0.0016 18.4 0.4 0.0031 17.4 0.4 1.5 1 0 0 1 1 1 1 HTH domain MaoC_dehydratas PF01575.19 CQR55560.1 - 0.0027 17.3 0.1 0.0043 16.6 0.1 1.3 1 0 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 CQR55560.1 - 0.0036 17.6 0.1 0.0055 17.0 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily HTH_24 PF13412.6 CQR55560.1 - 0.015 14.8 0.2 0.039 13.5 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Arg_repressor PF01316.21 CQR55560.1 - 0.11 12.3 0.8 0.22 11.3 0.8 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain FA_synthesis PF02504.15 CQR55561.1 - 6.9e-116 386.8 2.0 7.8e-116 386.6 2.0 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein PTA_PTB PF01515.19 CQR55561.1 - 0.05 12.9 0.0 0.16 11.2 0.0 1.8 2 0 0 2 2 2 0 Phosphate acetyl/butaryl transferase ACP_syn_III_C PF08541.10 CQR55562.1 - 5.3e-38 129.1 0.3 4e-37 126.3 0.0 2.4 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 CQR55562.1 - 8.6e-31 105.6 0.5 1.5e-30 104.8 0.5 1.4 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 CQR55562.1 - 1.1e-06 28.2 0.1 4.1e-06 26.4 0.1 2.0 1 1 1 2 2 2 1 Thiolase, N-terminal domain Chal_sti_synt_N PF00195.19 CQR55562.1 - 8.9e-05 22.0 0.8 0.00019 20.9 0.8 1.6 1 1 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain Thiolase_C PF02803.18 CQR55562.1 - 0.0035 17.0 0.1 0.4 10.3 0.0 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain HMG_CoA_synt_N PF01154.17 CQR55562.1 - 0.0069 16.3 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal FAE1_CUT1_RppA PF08392.12 CQR55562.1 - 0.0076 15.6 0.0 0.03 13.6 0.0 1.9 2 0 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein Acyl_transf_1 PF00698.21 CQR55563.1 - 1.2e-48 166.3 0.4 1.4e-48 166.0 0.4 1.0 1 0 0 1 1 1 1 Acyl transferase domain DUF630 PF04783.12 CQR55563.1 - 0.009 16.2 0.1 8.2 6.7 0.0 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF630) Abhydrolase_6 PF12697.7 CQR55563.1 - 0.13 12.9 1.9 0.18 12.4 1.4 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family adh_short_C2 PF13561.6 CQR55564.1 - 1.2e-72 244.2 3.1 1.5e-72 244.0 3.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR55564.1 - 9.8e-64 214.4 4.1 1.2e-63 214.2 4.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR55564.1 - 1.6e-24 86.8 1.1 9.1e-24 84.3 0.9 1.9 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 CQR55564.1 - 0.00022 20.8 0.4 0.00051 19.6 0.4 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 CQR55564.1 - 0.0055 15.9 0.6 0.0075 15.4 0.6 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein PALP PF00291.25 CQR55564.1 - 0.016 14.7 0.5 0.026 13.9 0.5 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Glyco_transf_4 PF13439.6 CQR55564.1 - 0.038 14.0 0.0 5.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 CutC PF03932.14 CQR55564.1 - 0.066 12.7 0.8 1 8.8 0.4 2.1 2 0 0 2 2 2 0 CutC family PP-binding PF00550.25 CQR55565.1 - 3.5e-16 59.3 1.1 4e-16 59.1 1.1 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 CQR55565.1 - 7.8e-05 22.8 2.4 8.3e-05 22.7 2.2 1.2 1 1 0 1 1 1 1 Acyl-carrier DUF1493 PF07377.12 CQR55565.1 - 0.068 13.6 0.3 0.075 13.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) ketoacyl-synt PF00109.26 CQR55566.1 - 1.8e-60 204.6 1.7 1.4e-59 201.7 0.6 2.1 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 CQR55566.1 - 8.3e-37 125.8 1.0 1.3e-36 125.1 1.0 1.3 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR55566.1 - 0.0011 19.4 0.0 0.0022 18.4 0.0 1.5 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension Thiolase_N PF00108.23 CQR55566.1 - 0.0045 16.4 1.3 0.067 12.6 0.4 2.3 2 1 0 2 2 2 1 Thiolase, N-terminal domain Ribonucleas_3_3 PF14622.6 CQR55567.1 - 1.3e-36 125.6 0.0 2.1e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 CQR55567.1 - 9e-21 74.5 0.0 1.6e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.26 CQR55567.1 - 1.6e-17 64.0 0.0 2.4e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Double-stranded RNA binding motif DND1_DSRM PF14709.7 CQR55567.1 - 0.11 12.8 0.1 0.35 11.2 0.1 1.8 1 1 0 1 1 1 0 double strand RNA binding domain from DEAD END PROTEIN 1 SMC_N PF02463.19 CQR55568.1 - 8.6e-77 257.5 1.8 1.2e-76 257.1 1.8 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 CQR55568.1 - 1.7e-29 102.5 0.0 4.1e-29 101.3 0.0 1.7 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 CQR55568.1 - 8e-20 72.2 1.3 8e-20 72.2 1.3 6.7 2 2 2 4 4 1 1 AAA domain AAA_21 PF13304.6 CQR55568.1 - 6.4e-15 55.7 1.3 1.8e-06 28.0 0.0 3.4 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR55568.1 - 6.6e-10 39.2 0.8 6.6e-10 39.2 0.8 4.7 2 2 1 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 CQR55568.1 - 2.8e-05 23.8 0.0 5.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 CQR55568.1 - 0.037 14.3 0.0 0.24 11.6 0.0 2.5 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit TRCF PF03461.15 CQR55568.1 - 0.054 13.9 1.7 0.28 11.6 0.3 3.0 2 0 0 2 2 2 0 TRCF domain DUF1492 PF07374.11 CQR55568.1 - 0.44 10.7 3.1 0.73 10.0 0.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) COMP PF11598.8 CQR55568.1 - 2.1 8.9 0.0 2.1 8.9 0.0 4.8 6 0 0 6 6 6 0 Cartilage oligomeric matrix protein AAA_13 PF13166.6 CQR55568.1 - 3.7 6.1 70.0 0.04 12.6 10.3 5.5 3 2 2 5 5 4 0 AAA domain SRP54 PF00448.22 CQR55569.1 - 1.1e-81 273.1 2.4 1.1e-81 273.1 2.4 1.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 CQR55569.1 - 3.4e-14 52.8 2.0 3.4e-14 52.8 2.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_16 PF13191.6 CQR55569.1 - 7e-06 26.5 0.4 2.4e-05 24.8 0.1 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 CQR55569.1 - 6e-05 22.9 1.2 0.00013 21.8 1.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR55569.1 - 0.00044 20.5 2.1 0.0015 18.8 0.5 2.5 2 2 0 2 2 2 1 AAA domain ABC_tran PF00005.27 CQR55569.1 - 0.00078 20.0 0.0 0.0015 19.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.6 CQR55569.1 - 0.00085 19.8 0.8 0.0025 18.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.6 CQR55569.1 - 0.0018 18.2 0.4 0.0034 17.3 0.4 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 CQR55569.1 - 0.0018 17.6 0.3 0.0033 16.7 0.1 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 CQR55569.1 - 0.0028 18.1 0.1 0.0086 16.5 0.1 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 CQR55569.1 - 0.0036 16.3 0.0 0.0071 15.4 0.0 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 CQR55569.1 - 0.0048 16.6 0.4 0.016 14.9 0.2 2.0 2 0 0 2 2 1 1 Thymidylate kinase MMR_HSR1 PF01926.23 CQR55569.1 - 0.0069 16.5 0.3 0.04 14.0 0.3 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase APS_kinase PF01583.20 CQR55569.1 - 0.007 16.3 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.15 CQR55569.1 - 0.0077 15.4 3.3 0.021 14.0 1.1 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_33 PF13671.6 CQR55569.1 - 0.01 16.0 0.6 0.027 14.6 0.6 1.8 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 CQR55569.1 - 0.015 15.1 0.4 1.3 8.8 0.0 3.0 3 0 0 3 3 3 0 Bacterial dnaA protein CbiA PF01656.23 CQR55569.1 - 0.016 15.3 3.2 0.039 14.0 1.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain PIF1 PF05970.14 CQR55569.1 - 0.018 14.2 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase cobW PF02492.19 CQR55569.1 - 0.019 14.6 0.4 0.039 13.5 0.4 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 CQR55569.1 - 0.02 14.9 0.1 0.087 12.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 CQR55569.1 - 0.022 14.7 0.2 0.079 12.9 0.0 2.1 2 1 0 2 2 2 0 RsgA GTPase ResIII PF04851.15 CQR55569.1 - 0.025 14.6 1.1 0.2 11.7 0.1 2.4 1 1 1 3 3 3 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 CQR55569.1 - 0.026 14.3 0.0 0.061 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 CQR55569.1 - 0.029 14.4 0.1 0.092 12.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) KdpD PF02702.17 CQR55569.1 - 0.046 13.2 1.9 0.17 11.4 0.8 2.3 2 1 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain Zeta_toxin PF06414.12 CQR55569.1 - 0.052 12.8 0.0 0.094 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 CQR55569.1 - 0.058 13.6 0.6 0.31 11.3 0.4 2.2 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 CQR55569.1 - 0.11 12.4 0.5 0.65 9.9 0.3 2.2 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 CQR55569.1 - 0.23 11.4 5.0 0.7 9.8 0.6 2.8 2 1 1 3 3 3 0 NTPase CP_ATPgrasp_2 PF14403.6 CQR55570.1 - 4.2e-154 513.0 0.0 5.2e-154 512.7 0.0 1.1 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 CQR55570.1 - 2.8e-140 467.1 0.0 4.4e-140 466.4 0.0 1.3 1 0 0 1 1 1 1 A circularly permuted ATPgrasp Alpha-E PF04168.12 CQR55571.1 - 1.4e-82 277.8 2.1 1.5e-82 277.7 2.1 1.0 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. DUF386 PF04074.12 CQR55571.1 - 0.02 14.8 0.1 0.039 13.9 0.1 1.5 1 0 0 1 1 1 0 YhcH/YjgK/YiaL MnmE_helical PF12631.7 CQR55571.1 - 0.061 13.5 0.2 0.71 10.0 0.0 2.4 1 1 0 2 2 2 0 MnmE helical domain Transglut_core PF01841.19 CQR55572.1 - 2.2e-23 82.8 0.0 3.5e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.10 CQR55572.1 - 4.8e-22 78.7 3.3 9.9e-22 77.6 3.3 1.6 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region DUF553 PF04473.12 CQR55572.1 - 0.00015 21.3 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain adh_short_C2 PF13561.6 CQR55573.1 - 3.8e-55 187.0 0.0 4.9e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR55573.1 - 5.8e-54 182.5 0.2 7e-54 182.3 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR55573.1 - 5.9e-09 36.1 0.1 8.2e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 CQR55573.1 - 0.00087 18.7 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 CQR55573.1 - 0.057 13.3 0.2 0.094 12.6 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2087 PF09860.9 CQR55574.1 - 1.5e-29 101.9 0.5 3.5e-29 100.8 0.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2087) HTH_37 PF13744.6 CQR55574.1 - 0.083 12.9 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0492 PF15744.5 CQR55574.1 - 0.085 12.1 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein family UPF0492 GIY-YIG PF01541.24 CQR55575.1 - 2.6e-08 34.0 0.1 7.2e-08 32.6 0.1 1.7 1 1 0 1 1 1 1 GIY-YIG catalytic domain DUF1992 PF09350.10 CQR55576.1 - 3.1e-25 88.1 0.2 5e-25 87.5 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1992) HrpB_C PF08482.10 CQR55577.1 - 1e-54 184.5 0.0 1.8e-54 183.7 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent helicase C-terminal Helicase_C PF00271.31 CQR55577.1 - 4.6e-13 49.5 0.0 8.4e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HA2 PF04408.23 CQR55577.1 - 2.7e-11 43.7 0.3 5.7e-11 42.7 0.3 1.5 1 0 0 1 1 1 1 Helicase associated domain (HA2) DEAD PF00270.29 CQR55577.1 - 5.2e-06 26.3 0.0 9.6e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 CQR55577.1 - 0.19 11.7 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Flavivirus DEAD domain YflT PF11181.8 CQR55578.1 - 2.1e-16 60.3 0.2 2.1e-15 57.0 0.2 2.1 1 1 0 1 1 1 1 Heat induced stress protein YflT DUF3341 PF11821.8 CQR55578.1 - 0.083 12.5 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) RNA_pol_Rpb2_4 PF04566.13 CQR55578.1 - 0.11 12.8 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 4 DUF1269 PF06897.12 CQR55578.1 - 0.4 11.0 17.8 3.1 8.1 14.7 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Caroten_synth PF04240.12 CQR55579.1 - 3.5e-11 43.4 15.7 3.5e-11 43.4 15.7 2.1 1 1 0 2 2 2 1 Carotenoid biosynthesis protein TetR_C_8 PF14278.6 CQR55580.1 - 1.3e-16 60.6 2.7 2.8e-16 59.5 0.3 2.2 2 1 1 3 3 3 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR55580.1 - 6e-07 29.2 0.0 1.4e-06 28.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR55580.1 - 0.00056 20.1 0.6 0.002 18.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_AraC PF00165.23 CQR55580.1 - 0.0027 17.8 0.0 0.0063 16.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.6 CQR55580.1 - 0.0045 16.8 0.3 0.018 14.8 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_Tnp_1 PF01527.20 CQR55580.1 - 0.012 15.9 0.1 0.06 13.7 0.0 2.2 2 0 0 2 2 2 0 Transposase HTH_26 PF13443.6 CQR55580.1 - 0.014 15.9 0.0 0.03 14.8 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF1998 PF09369.10 CQR55581.1 - 0.055 14.2 0.0 0.085 13.6 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1998) RTP PF02334.16 CQR55582.1 - 4.2e-51 172.4 1.0 4.7e-51 172.3 1.0 1.0 1 0 0 1 1 1 1 Replication terminator protein PadR PF03551.14 CQR55582.1 - 2.7e-07 30.4 0.3 4.9e-07 29.6 0.3 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family AbiEi_4 PF13338.6 CQR55582.1 - 0.016 15.3 0.0 0.034 14.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin zf-dskA_traR PF01258.17 CQR55583.1 - 8.1e-05 22.5 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DUF2093 PF09866.9 CQR55583.1 - 0.043 13.3 0.0 0.083 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2093) DUF1043 PF06295.12 CQR55583.1 - 0.17 11.9 2.2 0.2 11.7 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) OTOS PF15182.6 CQR55583.1 - 0.17 11.8 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Otospiralin DivIVA PF05103.13 CQR55584.1 - 6.5e-15 55.4 2.2 6.9e-15 55.3 1.1 1.6 2 0 0 2 2 2 1 DivIVA protein DHR10 PF18595.1 CQR55584.1 - 0.059 13.4 3.5 0.33 11.0 0.4 2.6 3 0 0 3 3 3 0 Designed helical repeat protein 10 domain SANT_DAMP1_like PF16282.5 CQR55584.1 - 0.094 12.9 0.9 0.15 12.3 0.9 1.3 1 0 0 1 1 1 0 SANT/Myb-like domain of DAMP1 CHASE3 PF05227.13 CQR55585.1 - 2.1e-31 108.7 1.7 4.9e-30 104.3 0.0 2.4 2 0 0 2 2 2 1 CHASE3 domain HATPase_c PF02518.26 CQR55585.1 - 1.3e-26 93.3 0.0 2.6e-26 92.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR55585.1 - 2.8e-25 88.7 0.9 1.2e-24 86.6 0.9 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 CQR55585.1 - 1.9e-18 66.2 0.3 1.9e-18 66.2 0.3 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 CQR55585.1 - 8.6e-10 39.0 0.0 2e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 CQR55585.1 - 1.3e-08 35.6 0.0 4.2e-08 33.9 0.0 2.0 1 0 0 1 1 1 1 GAF domain HAMP PF00672.25 CQR55585.1 - 6e-07 29.8 0.3 1.8e-06 28.2 0.1 2.1 2 0 0 2 2 1 1 HAMP domain DUF3584 PF12128.8 CQR55585.1 - 0.042 11.4 10.8 0.062 10.8 10.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF489 PF04356.12 CQR55585.1 - 0.14 12.2 6.4 0.32 11.0 6.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF489) DUF1189 PF06691.11 CQR55585.1 - 0.15 11.6 8.0 0.16 11.5 0.3 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1189) Spc7 PF08317.11 CQR55585.1 - 0.28 10.0 15.7 0.58 9.0 15.7 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein OmpH PF03938.14 CQR55585.1 - 0.86 9.9 10.4 2.3 8.5 10.4 1.7 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Exonuc_VII_L PF02601.15 CQR55585.1 - 1.1 8.7 7.9 2.7 7.5 7.9 1.6 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF3450 PF11932.8 CQR55585.1 - 5.4 6.3 19.7 2.9 7.1 14.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) PRD PF00874.20 CQR55586.1 - 7e-47 157.7 4.1 1.4e-22 79.8 0.1 2.2 2 0 0 2 2 2 2 PRD domain CAT_RBD PF03123.15 CQR55586.1 - 2.6e-14 52.9 0.6 5.7e-14 51.8 0.6 1.6 1 0 0 1 1 1 1 CAT RNA binding domain DUF4438 PF14505.6 CQR55586.1 - 0.028 13.4 0.0 0.054 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) PTS_EIIA_1 PF00358.20 CQR55587.1 - 8.7e-48 161.3 0.7 1.1e-47 161.0 0.7 1.1 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Peptidase_M23 PF01551.22 CQR55587.1 - 0.0031 17.7 0.2 0.0079 16.4 0.2 1.8 1 1 0 1 1 1 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.6 CQR55587.1 - 0.0048 16.7 0.2 0.047 13.5 0.0 2.5 3 0 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 CQR55587.1 - 0.1 12.5 0.3 2.4 8.1 0.0 2.7 3 0 0 3 3 3 0 Biotin-requiring enzyme PTS_EIIC PF02378.18 CQR55588.1 - 1.5e-74 250.9 39.5 2.5e-74 250.2 39.5 1.3 1 0 0 1 1 1 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR55588.1 - 3.2e-13 48.9 0.7 5.7e-13 48.1 0.7 1.4 1 0 0 1 1 1 1 phosphotransferase system, EIIB Ly-6_related PF06579.12 CQR55590.1 - 0.18 12.0 10.3 0.27 11.5 10.3 1.3 1 1 0 1 1 1 0 Caenorhabditis elegans ly-6-related protein UCH PF00443.29 CQR55590.1 - 3.7 7.0 4.6 3.8 6.9 4.6 1.0 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase Sigma70_r2 PF04542.14 CQR55591.1 - 7.7e-13 48.0 0.3 1.4e-12 47.2 0.3 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR55591.1 - 1.1e-10 41.0 0.0 2.3e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55591.1 - 5.8e-06 25.7 0.0 1.3e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR55591.1 - 0.0015 18.3 0.0 0.0039 16.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 CQR55591.1 - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 CQR55591.1 - 0.1 12.4 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_9 PF14514.6 CQR55591.1 - 0.12 12.5 0.2 0.23 11.6 0.2 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain GerE PF00196.19 CQR55591.1 - 0.16 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF4179 PF13786.6 CQR55592.1 - 0.0083 16.6 0.2 0.026 15.0 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4179) TPPK_C PF12555.8 CQR55592.1 - 0.65 10.1 3.0 1.4 9.0 3.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal ABC_tran PF00005.27 CQR55593.1 - 2.1e-26 93.1 0.0 3.3e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55593.1 - 1.3e-08 35.0 0.5 0.00057 19.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR55593.1 - 0.0032 17.2 0.0 0.0061 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR55593.1 - 0.0082 16.7 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR55593.1 - 0.02 14.8 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 CQR55593.1 - 0.028 13.9 0.1 3.8 6.9 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR55593.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC2_membrane_2 PF12679.7 CQR55594.1 - 2.6e-13 49.9 20.5 9.1e-13 48.1 20.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR55594.1 - 1.8e-06 27.5 20.3 1.8e-06 27.5 20.3 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR55594.1 - 2.8e-06 26.7 19.9 2.8e-06 26.7 19.9 2.2 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR55594.1 - 0.00014 21.9 10.2 0.00014 21.9 10.2 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein SLC3A2_N PF16028.5 CQR55594.1 - 0.01 15.4 0.3 0.01 15.4 0.3 2.5 3 0 0 3 3 3 0 Solute carrier family 3 member 2 N-terminus Tweety PF04906.13 CQR55594.1 - 0.017 13.8 0.7 0.034 12.8 0.7 1.5 1 0 0 1 1 1 0 Tweety CbtA PF09490.10 CQR55594.1 - 0.025 14.4 1.4 0.025 14.4 1.4 3.0 1 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtA) EMP70 PF02990.16 CQR55594.1 - 1.7 7.2 12.4 1 7.9 10.2 1.7 1 1 1 2 2 2 0 Endomembrane protein 70 Saf_2TM PF18303.1 CQR55594.1 - 5 6.7 8.4 24 4.5 3.9 2.5 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain HxlR PF01638.17 CQR55595.1 - 1.3e-30 105.0 0.0 1.7e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 CQR55595.1 - 0.015 14.9 0.1 0.022 14.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 CQR55595.1 - 0.016 15.3 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 CQR55595.1 - 0.052 13.4 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 CQR55595.1 - 0.067 13.2 0.0 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_45 PF14947.6 CQR55595.1 - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix GTP_cyclohydro2 PF00925.20 CQR55596.1 - 6.7e-47 159.1 0.0 9.2e-47 158.7 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase II ABC_tran PF00005.27 CQR55597.1 - 5.8e-28 98.1 0.0 1.1e-27 97.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55597.1 - 5.2e-11 42.9 3.4 1.2e-08 35.1 0.5 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR55597.1 - 0.0065 16.2 0.2 1.6 8.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 CQR55597.1 - 0.015 15.0 0.2 0.029 14.1 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR55597.1 - 0.064 13.6 0.0 0.13 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 CQR55597.1 - 0.17 12.4 2.0 0.19 12.2 0.4 1.8 1 1 0 1 1 1 0 AAA domain ABC2_membrane_6 PF06182.11 CQR55598.1 - 2.5e-20 73.3 15.7 2.5e-20 73.3 15.7 1.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR55598.1 - 0.22 10.6 26.1 0.39 9.8 26.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_6 PF06182.11 CQR55599.1 - 2.4e-49 168.2 16.1 2.8e-49 168.0 16.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2534 PF10749.9 CQR55599.1 - 0.0012 19.0 1.4 0.0012 19.0 1.4 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2534) YtpI PF14007.6 CQR55599.1 - 0.086 13.0 0.1 0.086 13.0 0.1 3.1 4 0 0 4 4 4 0 YtpI-like protein ROK PF00480.20 CQR55600.1 - 2.1e-60 204.7 0.1 2.5e-60 204.4 0.1 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 CQR55600.1 - 0.00027 20.5 0.0 0.00076 19.1 0.0 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Raco_middle PF17651.1 CQR55600.1 - 0.087 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 RACo middle region FGGY_N PF00370.21 CQR55600.1 - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Hydant_A_N PF05378.13 CQR55600.1 - 0.17 11.6 0.0 0.47 10.1 0.0 1.7 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region NTP_transf_9 PF04248.12 CQR55601.1 - 1.2e-59 198.1 0.0 2.8e-29 100.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF427) IclR PF01614.18 CQR55602.1 - 2.3e-19 69.5 0.0 5e-19 68.4 0.0 1.5 1 1 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 CQR55602.1 - 3.1e-15 55.7 0.4 6.2e-15 54.7 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 CQR55602.1 - 2e-08 34.0 0.0 4.5e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 CQR55602.1 - 2.6e-08 33.3 0.2 7.1e-08 31.9 0.0 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 CQR55602.1 - 3.7e-08 33.1 0.0 1.2e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 CQR55602.1 - 1.9e-07 31.3 0.1 6.4e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator MarR PF01047.22 CQR55602.1 - 7.1e-07 29.1 0.1 1.7e-06 27.9 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR55602.1 - 7.3e-06 25.8 0.0 2.1e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 CQR55602.1 - 5.2e-05 23.2 0.0 0.0001 22.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.11 CQR55602.1 - 0.0004 19.9 0.0 0.00085 18.8 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR55602.1 - 0.00061 19.7 1.1 0.0012 18.7 0.3 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 CQR55602.1 - 0.00078 19.3 0.1 0.0015 18.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 CQR55602.1 - 0.0019 18.0 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 CQR55602.1 - 0.01 15.5 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 CQR55602.1 - 0.011 15.8 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_6 PF01418.17 CQR55602.1 - 0.02 14.8 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF4423 PF14394.6 CQR55602.1 - 0.028 14.1 0.1 0.071 12.8 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4423) HxlR PF01638.17 CQR55602.1 - 0.037 13.9 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Replic_Relax PF13814.6 CQR55602.1 - 0.048 13.7 0.0 0.083 12.9 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation HTH_47 PF16221.5 CQR55602.1 - 0.07 12.7 0.1 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 winged helix-turn-helix HTH_29 PF13551.6 CQR55602.1 - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 CQR55602.1 - 0.12 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 CQR55602.1 - 0.17 12.1 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sulfolobus_pRN PF05584.11 CQR55602.1 - 0.17 12.0 1.0 0.71 9.9 0.0 2.4 2 1 1 3 3 3 0 Sulfolobus plasmid regulatory protein Ribosomal_S25 PF03297.15 CQR55602.1 - 0.18 12.1 0.1 0.66 10.2 0.0 1.9 2 0 0 2 2 2 0 S25 ribosomal protein ABC_tran PF00005.27 CQR55603.1 - 6.7e-36 123.8 0.0 1.2e-35 123.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter CBS PF00571.28 CQR55603.1 - 4e-13 49.6 1.1 1.9e-09 37.8 0.2 2.8 2 0 0 2 2 2 2 CBS domain AAA_21 PF13304.6 CQR55603.1 - 5.5e-11 42.8 1.0 2.8e-06 27.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR55603.1 - 2.1e-05 24.8 0.1 6.7e-05 23.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR55603.1 - 5.5e-05 23.6 0.0 0.00018 21.9 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 CQR55603.1 - 0.00063 19.7 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 CQR55603.1 - 0.0011 18.7 0.1 0.011 15.4 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 CQR55603.1 - 0.0015 19.0 0.1 0.01 16.3 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 CQR55603.1 - 0.0025 17.3 0.1 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 CQR55603.1 - 0.0026 16.6 0.3 0.32 9.8 0.1 2.4 2 1 0 2 2 2 1 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 CQR55603.1 - 0.0044 16.9 0.1 0.01 15.8 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 CQR55603.1 - 0.0077 16.7 0.2 0.018 15.6 0.2 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 CQR55603.1 - 0.0084 15.3 0.1 0.015 14.5 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 CQR55603.1 - 0.0085 16.0 0.2 0.031 14.2 0.1 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 CQR55603.1 - 0.0086 15.8 0.5 0.024 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR55603.1 - 0.011 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR55603.1 - 0.017 14.9 0.3 0.03 14.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.25 CQR55603.1 - 0.019 14.7 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.12 CQR55603.1 - 0.023 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 CQR55603.1 - 0.03 14.4 0.1 0.056 13.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 CQR55603.1 - 0.043 13.5 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 CQR55603.1 - 0.055 14.0 0.1 0.17 12.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR55603.1 - 0.055 13.6 0.1 0.17 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR55603.1 - 0.063 13.5 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 CQR55603.1 - 0.065 13.0 0.3 0.17 11.6 0.2 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.12 CQR55603.1 - 0.068 12.4 0.0 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin RecA PF00154.21 CQR55603.1 - 0.069 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein Mg_chelatase PF01078.21 CQR55603.1 - 0.084 12.3 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 CQR55603.1 - 0.12 12.4 0.0 0.35 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.14 CQR55603.1 - 0.12 12.3 0.1 0.31 11.0 0.1 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 CQR55603.1 - 0.15 11.6 0.0 0.34 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 CQR55603.1 - 0.17 12.3 0.0 0.41 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 CQR55603.1 - 0.19 12.0 0.7 0.41 11.0 0.2 1.8 2 0 0 2 2 1 0 AAA domain BPD_transp_1 PF00528.22 CQR55604.1 - 1.2e-17 64.3 25.2 1.6e-17 63.9 25.2 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2964 PF11177.8 CQR55604.1 - 1.4 9.2 9.7 1.2 9.4 3.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) OpuAC PF04069.12 CQR55605.1 - 7.2e-57 192.9 4.4 8.6e-57 192.6 4.4 1.1 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Bac_luciferase PF00296.20 CQR55606.1 - 2.8e-63 214.2 0.3 5.9e-63 213.2 0.4 1.4 2 0 0 2 2 2 1 Luciferase-like monooxygenase Urocanase PF01175.18 CQR55607.1 - 1.9e-78 262.9 0.0 3.2e-78 262.2 0.0 1.4 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_C PF17392.2 CQR55607.1 - 2.8e-76 255.3 0.1 5.2e-76 254.5 0.1 1.4 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase_N PF17391.2 CQR55607.1 - 9.7e-49 164.3 0.0 1.5e-48 163.6 0.0 1.3 1 0 0 1 1 1 1 Urocanase N-terminal domain DUF917 PF06032.12 CQR55608.1 - 1.4e-56 191.8 1.8 1.8e-56 191.5 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Pyr_redox_dim PF02852.22 CQR55608.1 - 0.0017 18.6 0.1 0.36 11.1 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lyase_aromatic PF00221.19 CQR55609.1 - 1.9e-141 471.9 0.0 2.3e-141 471.6 0.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase NTP_transf_9 PF04248.12 CQR55610.1 - 6.9e-59 195.7 0.3 3.9e-32 110.0 0.0 2.5 3 0 0 3 3 3 2 Domain of unknown function (DUF427) GATA-N PF05349.12 CQR55612.1 - 0.016 15.6 0.0 0.019 15.3 0.0 1.2 1 0 0 1 1 1 0 GATA-type transcription activator, N-terminal DUF4395 PF14340.6 CQR55613.1 - 1.2e-31 109.7 10.4 1.4e-31 109.6 10.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4395) DUF3310 PF11753.8 CQR55613.1 - 0.055 13.7 0.1 0.23 11.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknwon function (DUF3310) Neurensin PF14927.6 CQR55613.1 - 0.07 12.8 0.3 0.097 12.4 0.1 1.4 1 1 0 1 1 1 0 Neurensin bVLRF1 PF18826.1 CQR55613.1 - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 bacteroidetes VLRF1 release factor Adeno_E3_CR2 PF02439.15 CQR55613.1 - 0.19 11.5 2.8 0.47 10.3 2.8 1.7 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 2TM PF13239.6 CQR55613.1 - 0.24 11.7 4.4 0.72 10.2 0.6 2.2 2 0 0 2 2 2 0 2TM domain SPC12 PF06645.13 CQR55613.1 - 2.2 8.5 8.9 0.45 10.6 3.0 2.3 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) TetR_N PF00440.23 CQR55614.1 - 8.1e-13 47.9 0.0 1.5e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_13 PF16925.5 CQR55614.1 - 0.0019 18.1 0.0 0.0032 17.4 0.0 1.4 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF3018 PF11455.8 CQR55614.1 - 0.057 13.3 0.6 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3018) TetR_C_6 PF13977.6 CQR55614.1 - 0.072 13.3 0.4 0.11 12.8 0.4 1.3 1 0 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal DUF1803 PF08820.10 CQR55614.1 - 0.11 12.5 0.3 0.43 10.6 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1803) MFS_1 PF07690.16 CQR55615.1 - 9.5e-45 153.0 62.8 9.5e-45 153.0 62.8 2.5 2 1 0 2 2 2 1 Major Facilitator Superfamily Phage_holin_2_4 PF16082.5 CQR55615.1 - 0.016 14.9 3.8 1.7 8.5 0.0 3.5 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like MFS_3 PF05977.13 CQR55615.1 - 3.1 6.1 34.1 0.017 13.6 19.9 2.6 2 1 1 3 3 3 0 Transmembrane secretion effector Bac_luciferase PF00296.20 CQR55616.1 - 2.2e-54 185.0 6.2 2.9e-54 184.6 6.2 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase LysR_substrate PF03466.20 CQR55617.1 - 1.6e-36 125.7 0.5 2.7e-36 124.9 0.2 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 CQR55617.1 - 1.2e-20 73.2 0.2 3.2e-20 71.8 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR55617.1 - 0.0012 18.6 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain DUF2089 PF09862.9 CQR55617.1 - 0.047 13.7 0.1 0.43 10.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) CMD PF02627.20 CQR55618.1 - 2.4e-27 94.8 7.7 1.9e-17 63.1 1.6 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family DUF5371 PF17341.2 CQR55618.1 - 0.073 13.3 0.3 0.41 10.9 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5371) Peptidase_M20 PF01546.28 CQR55619.1 - 1.2e-31 110.1 0.5 1.4e-31 109.8 0.5 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR55619.1 - 1.2e-14 54.2 0.0 2.8e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1889 PF08986.10 CQR55619.1 - 0.095 13.1 0.0 2.3 8.6 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1889) OSR1_C PF12202.8 CQR55619.1 - 0.21 11.8 0.0 0.5 10.6 0.0 1.6 1 0 0 1 1 1 0 Oxidative-stress-responsive kinase 1 C-terminal domain SBP_bac_5 PF00496.22 CQR55620.1 - 2.6e-64 217.6 4.0 3.4e-64 217.2 4.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 CQR55621.1 - 9.1e-43 146.1 13.3 9.1e-43 146.1 13.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Yip1 PF04893.17 CQR55621.1 - 0.29 10.9 21.2 0.72 9.5 5.9 3.2 3 0 0 3 3 3 0 Yip1 domain DUF2929 PF11151.8 CQR55621.1 - 5.3 7.4 13.3 2.1 8.7 0.5 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) BPD_transp_1 PF00528.22 CQR55622.1 - 1e-26 93.8 13.1 3.5e-26 92.1 11.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR55622.1 - 3.7e-05 23.6 0.1 3.7e-05 23.6 0.1 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C Imm17 PF15562.6 CQR55622.1 - 0.032 14.1 1.3 0.21 11.5 0.0 2.9 2 0 0 2 2 2 0 Immunity protein 17 ABC_tran PF00005.27 CQR55623.1 - 8.3e-31 107.3 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR55623.1 - 5.5e-23 81.3 0.1 1.1e-22 80.3 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR55623.1 - 8.6e-06 25.3 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR55623.1 - 5.9e-05 23.0 0.0 0.00062 19.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR55623.1 - 0.00034 20.9 0.1 0.0013 19.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR55623.1 - 0.0014 19.0 0.1 0.0023 18.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 CQR55623.1 - 0.0055 15.9 0.0 0.0095 15.2 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_7 PF12775.7 CQR55623.1 - 0.009 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region TniB PF05621.11 CQR55623.1 - 0.081 12.3 0.1 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_5 PF07728.14 CQR55623.1 - 0.12 12.3 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 CQR55623.1 - 0.13 11.9 0.1 0.18 11.5 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.12 CQR55623.1 - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PRK PF00485.18 CQR55623.1 - 0.14 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 CQR55624.1 - 9.8e-32 110.3 0.0 1.3e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR55624.1 - 9.9e-19 67.6 0.1 1.7e-18 66.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR55624.1 - 0.00016 21.6 0.1 0.35 10.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR55624.1 - 0.0031 17.9 0.0 0.0045 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 CQR55624.1 - 0.012 14.3 0.2 0.044 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 CQR55624.1 - 0.025 14.3 0.1 0.042 13.6 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR55624.1 - 0.027 14.7 0.6 0.056 13.7 0.6 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR55624.1 - 0.037 13.9 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase RNA_helicase PF00910.22 CQR55624.1 - 0.043 14.2 0.0 0.087 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 CQR55624.1 - 0.057 13.4 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Bac_luciferase PF00296.20 CQR55625.1 - 3.5e-59 200.8 0.4 4.5e-59 200.4 0.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Acyl-CoA_dh_2 PF08028.11 CQR55626.1 - 8.4e-18 64.9 6.4 8.4e-18 64.9 6.4 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 CQR55626.1 - 1.7e-14 54.3 4.6 3e-14 53.5 4.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 CQR55626.1 - 1.1e-12 48.6 0.0 3.6e-12 46.9 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 CQR55626.1 - 1.9e-08 34.4 0.0 4.1e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 CQR55626.1 - 0.017 14.8 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal OrfB_IS605 PF01385.19 CQR55627.1 - 2.6e-29 101.9 2.5 7.2e-29 100.5 2.5 1.7 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 CQR55627.1 - 2.9e-23 81.1 1.8 7.9e-23 79.7 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 CQR55627.1 - 1.4e-22 79.4 0.6 3e-22 78.3 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L32e PF01655.18 CQR55627.1 - 0.011 16.2 3.9 0.026 14.9 3.9 1.7 1 0 0 1 1 1 0 Ribosomal protein L32 zf-ISL3 PF14690.6 CQR55627.1 - 8.3 7.2 7.5 18 6.1 0.4 3.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Peptidase_M15 PF01427.17 CQR55628.1 - 1.7e-38 132.4 0.0 2.2e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 D-ala-D-ala dipeptidase Cu_amine_oxidN1 PF07833.11 CQR55629.1 - 5.6e-12 46.0 0.0 3.9e-11 43.3 0.0 2.2 2 1 1 3 3 3 1 Copper amine oxidase N-terminal domain DUF3887 PF13026.6 CQR55629.1 - 2.5e-06 28.2 0.0 4.2e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) TetR_N PF00440.23 CQR55630.1 - 1.3e-09 37.6 0.1 2.4e-09 36.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MnmE_helical PF12631.7 CQR55630.1 - 0.14 12.3 0.1 0.22 11.7 0.1 1.4 1 1 0 1 1 1 0 MnmE helical domain MFS_1 PF07690.16 CQR55631.1 - 9.8e-55 185.9 41.4 9.8e-55 185.9 41.4 2.5 1 1 1 2 2 2 1 Major Facilitator Superfamily TRI12 PF06609.13 CQR55631.1 - 2.7e-09 36.0 14.2 2.7e-09 36.0 14.2 2.6 1 1 2 3 3 3 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 CQR55631.1 - 4.3e-07 29.1 11.8 4.3e-07 29.1 11.8 2.6 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 CQR55631.1 - 1e-05 24.3 8.6 1e-05 24.3 8.6 3.1 2 1 0 3 3 3 2 MFS/sugar transport protein PUCC PF03209.15 CQR55631.1 - 0.0046 16.0 6.5 0.0046 16.0 6.5 3.4 1 1 3 4 4 4 3 PUCC protein Beta-APP PF03494.13 CQR55631.1 - 0.14 12.0 0.3 0.14 12.0 0.3 2.2 2 0 0 2 2 2 0 Beta-amyloid peptide (beta-APP) TFIIE_alpha PF02002.17 CQR55632.1 - 0.053 13.4 0.2 0.13 12.1 0.2 1.7 1 0 0 1 1 1 0 TFIIE alpha subunit GCH_III PF05165.12 CQR55632.1 - 0.076 12.3 0.0 0.15 11.3 0.0 1.5 1 1 0 1 1 1 0 GTP cyclohydrolase III HTH_Crp_2 PF13545.6 CQR55632.1 - 0.16 12.0 0.0 0.47 10.5 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Peptidase_M20 PF01546.28 CQR55633.1 - 7.3e-28 97.7 0.5 1.1e-27 97.2 0.5 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR55633.1 - 3.9e-13 49.3 0.1 1.1e-12 47.8 0.1 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain ECH_1 PF00378.20 CQR55634.1 - 1.7e-25 89.8 0.0 2.1e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 CQR55634.1 - 1.4e-05 24.7 0.0 1.7e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF5615 PF18480.1 CQR55634.1 - 0.011 15.4 0.0 0.058 13.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) ECH_1 PF00378.20 CQR55635.1 - 1.1e-24 87.1 0.0 1.3e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 CQR55635.1 - 0.00082 19.0 0.0 0.00095 18.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_alpha PF03313.15 CQR55636.1 - 1.9e-84 283.4 1.3 2e-84 283.4 1.3 1.1 1 0 0 1 1 1 1 Serine dehydratase alpha chain SDH_beta PF03315.15 CQR55636.1 - 1.6e-22 80.5 1.0 4.6e-18 66.1 0.0 3.0 2 1 1 3 3 3 2 Serine dehydratase beta chain MmgE_PrpD PF03972.14 CQR55636.1 - 0.25 9.8 3.5 0.37 9.3 3.5 1.1 1 0 0 1 1 1 0 MmgE/PrpD family EamA PF00892.20 CQR55637.1 - 9.1e-39 132.8 32.2 3e-23 82.5 8.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 CQR55637.1 - 0.0034 16.8 3.9 0.33 10.3 0.3 2.4 2 1 0 2 2 2 2 Triose-phosphate Transporter family CRT-like PF08627.10 CQR55637.1 - 0.03 13.3 5.8 0.21 10.5 0.2 2.2 2 0 0 2 2 2 0 CRT-like, chloroquine-resistance transporter-like DUF1774 PF08611.10 CQR55637.1 - 1.1 9.6 5.3 0.29 11.5 0.7 2.4 2 1 0 2 2 2 0 Fungal protein of unknown function (DUF1774) LysR_substrate PF03466.20 CQR55638.1 - 3.7e-41 140.8 0.0 4.5e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR55638.1 - 3e-17 62.3 0.1 7.2e-17 61.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Peripla_BP_3 PF13377.6 CQR55639.1 - 8.6e-28 97.7 0.1 1.6e-27 96.8 0.1 1.5 1 0 0 1 1 1 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR55639.1 - 1.7e-18 66.1 0.2 3.5e-18 65.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR55639.1 - 1.6e-16 60.6 0.0 2e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR55639.1 - 2.8e-09 36.9 0.0 5.3e-09 36.0 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain HTH_31 PF13560.6 CQR55639.1 - 3.2e-05 24.2 0.5 0.00013 22.2 0.5 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR55639.1 - 4.4e-05 23.4 0.1 0.00013 21.9 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 CQR55639.1 - 0.00036 20.3 0.1 0.044 13.6 0.0 3.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 CQR55639.1 - 0.0012 18.9 1.0 1.4 9.1 0.0 3.8 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR55639.1 - 0.0044 16.4 0.0 0.012 15.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.6 CQR55639.1 - 0.019 15.0 0.7 0.076 13.0 0.1 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_AraC PF00165.23 CQR55639.1 - 0.038 14.1 0.1 4.1 7.6 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_38 PF13936.6 CQR55639.1 - 0.055 13.2 0.3 6.6 6.6 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain GFO_IDH_MocA PF01408.22 CQR55640.1 - 2.5e-23 83.2 0.0 5e-23 82.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55640.1 - 2.7e-12 46.7 0.0 9.1e-12 45.0 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR55640.1 - 5.9e-05 23.7 0.0 9.7e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ThuA PF06283.11 CQR55641.1 - 1.1e-42 146.7 0.2 1.3e-42 146.5 0.2 1.0 1 0 0 1 1 1 1 Trehalose utilisation GFO_IDH_MocA PF01408.22 CQR55642.1 - 7.1e-21 75.3 0.2 1.1e-20 74.6 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 CQR55642.1 - 4.8e-07 30.4 0.1 9e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 CQR55642.1 - 0.0039 17.4 0.2 0.023 14.9 0.1 2.3 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 CQR55642.1 - 0.0053 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.19 CQR55642.1 - 0.18 12.5 0.4 0.63 10.8 0.1 1.9 2 0 0 2 2 2 0 CoA binding domain HTH_AraC PF00165.23 CQR55643.1 - 2e-20 72.3 0.0 9.4e-09 35.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR55643.1 - 3.3e-19 68.9 0.0 5.6e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR55643.1 - 1.8e-12 47.3 0.1 2.8e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR55643.1 - 7.7e-08 31.9 0.2 1.5e-07 31.0 0.2 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.7 CQR55643.1 - 0.00021 21.0 0.0 0.032 13.9 0.0 2.7 3 0 0 3 3 3 1 Cupin Cupin_1 PF00190.22 CQR55643.1 - 0.003 17.2 0.1 0.0054 16.3 0.1 1.4 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.6 CQR55643.1 - 0.2 11.4 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 AraC-binding-like domain AP_endonuc_2 PF01261.24 CQR55644.1 - 3.3e-30 105.1 0.2 5.3e-30 104.4 0.2 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 CQR55644.1 - 0.00087 19.0 0.3 0.0093 15.7 0.0 2.6 3 0 0 3 3 3 1 AP endonuclease family 2 C terminus IU_nuc_hydro PF01156.19 CQR55644.1 - 0.11 12.1 0.0 0.19 11.2 0.0 1.4 2 0 0 2 2 2 0 Inosine-uridine preferring nucleoside hydrolase GFO_IDH_MocA PF01408.22 CQR55645.1 - 4.3e-19 69.5 0.7 4e-18 66.4 0.2 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55645.1 - 1.4e-07 31.5 0.0 2.4e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR55645.1 - 0.0043 17.7 0.0 0.0069 17.0 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain HTH_18 PF12833.7 CQR55647.1 - 2.7e-20 72.4 0.1 1.3e-19 70.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55647.1 - 8e-18 64.1 0.5 4.5e-08 33.0 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55647.1 - 0.0055 16.6 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_3 PF01381.22 CQR55647.1 - 0.024 14.7 0.0 0.07 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Cupin_2 PF07883.11 CQR55647.1 - 0.029 14.1 0.1 0.29 10.9 0.0 2.6 3 0 0 3 3 3 0 Cupin domain Rrf2 PF02082.20 CQR55647.1 - 0.19 12.1 0.1 0.36 11.2 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator Glyco_hydro_88 PF07470.13 CQR55648.1 - 1.5e-64 218.3 0.7 2.1e-64 217.8 0.7 1.2 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 ChitinaseA_N PF08329.10 CQR55648.1 - 0.014 15.0 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Chitinase A, N-terminal domain DUF4777 PF16007.5 CQR55648.1 - 0.12 12.7 0.1 4.8 7.5 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) Sigma70_r4_2 PF08281.12 CQR55649.1 - 9.7e-08 31.6 0.1 1.8e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55649.1 - 1.7e-06 27.4 0.0 3.2e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 SnoaL_2 PF12680.7 CQR55649.1 - 0.0026 18.4 0.4 0.0026 18.4 0.4 2.3 2 1 0 2 2 2 1 SnoaL-like domain DUF4440 PF14534.6 CQR55649.1 - 0.032 14.6 0.0 0.062 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 CQR55649.1 - 0.17 12.2 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 SnoaL-like domain TetR_N PF00440.23 CQR55650.1 - 5.4e-16 58.1 0.3 8.3e-16 57.5 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 CQR55650.1 - 0.0018 18.3 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain HTH_Tnp_1_2 PF13022.6 CQR55650.1 - 0.019 15.1 0.4 0.19 11.9 0.0 2.4 1 1 2 3 3 3 0 Helix-turn-helix of insertion element transposase IreB PF06135.12 CQR55650.1 - 0.074 13.3 0.0 8.1 6.7 0.0 2.5 2 0 0 2 2 2 0 IreB regulatory phosphoprotein DUF1801 PF08818.11 CQR55651.1 - 4.4e-13 49.5 0.0 5.3e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) DUF3894 PF13033.6 CQR55652.1 - 0.0084 16.2 1.6 0.015 15.4 1.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3894) HTH_18 PF12833.7 CQR55653.1 - 1.7e-18 66.7 0.0 5.2e-18 65.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55653.1 - 3.7e-15 55.6 0.9 1.4e-09 37.8 0.1 3.7 2 1 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55653.1 - 1.1e-10 41.5 0.0 1.8e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR55653.1 - 4.3e-09 36.0 0.0 7.2e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Hexapep PF00132.24 CQR55654.1 - 7.4e-15 54.0 13.3 6.8e-12 44.6 4.5 3.6 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 CQR55654.1 - 3e-11 42.9 9.2 4.7e-09 35.8 2.3 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Mac PF12464.8 CQR55654.1 - 5.8e-07 29.7 0.1 5.8e-07 29.7 0.1 1.5 2 0 0 2 2 2 1 Maltose acetyltransferase Hydrolase_3 PF08282.12 CQR55655.1 - 2.8e-43 148.5 2.2 3.2e-43 148.3 2.2 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR55655.1 - 2.5e-12 46.9 0.1 1.8e-08 34.3 0.0 2.2 1 1 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 CQR55655.1 - 5.7e-05 23.5 0.2 0.0023 18.2 0.2 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR55655.1 - 0.02 15.3 0.3 0.55 10.6 0.0 2.8 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2857 PF11198.8 CQR55655.1 - 0.084 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) Myb_DNA-bind_4 PF13837.6 CQR55655.1 - 0.17 12.3 0.0 1.9 8.9 0.0 2.2 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain MatE PF01554.18 CQR55656.1 - 1.6e-38 131.9 35.8 1.1e-28 99.9 16.7 2.7 2 1 1 3 3 3 2 MatE ABC_membrane PF00664.23 CQR55657.1 - 3.2e-49 168.0 12.9 3.6e-49 167.9 12.9 1.0 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_membrane_3 PF13748.6 CQR55657.1 - 0.09 12.0 5.0 0.64 9.2 5.0 2.1 1 1 0 1 1 1 0 ABC transporter transmembrane region ABC_tran PF00005.27 CQR55658.1 - 1.8e-29 103.0 0.0 2.7e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55658.1 - 0.00051 19.6 0.1 0.068 12.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF3584 PF12128.8 CQR55658.1 - 0.0017 16.0 0.2 0.0023 15.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MeaB PF03308.16 CQR55658.1 - 0.016 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 CQR55658.1 - 0.11 12.3 0.5 0.23 11.1 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR55658.1 - 0.13 12.4 0.1 0.28 11.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 CQR55658.1 - 0.22 10.1 0.1 1 7.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_membrane_3 PF13748.6 CQR55659.1 - 1.2e-05 24.7 0.2 1.4e-05 24.4 0.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_membrane PF00664.23 CQR55659.1 - 0.071 12.8 1.7 0.086 12.5 1.7 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region ABC_membrane PF00664.23 CQR55660.1 - 3.8e-21 75.9 2.5 4.1e-21 75.9 2.5 1.0 1 0 0 1 1 1 1 ABC transporter transmembrane region TrbC PF04956.13 CQR55660.1 - 0.00061 20.0 1.3 0.00094 19.4 1.3 1.3 1 0 0 1 1 1 1 TrbC/VIRB2 family SLATT_1 PF18181.1 CQR55660.1 - 0.0014 18.5 0.6 0.0017 18.3 0.6 1.2 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 1 ABC_membrane_3 PF13748.6 CQR55660.1 - 0.0019 17.5 0.3 0.0021 17.3 0.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_membrane_2 PF06472.15 CQR55660.1 - 0.02 14.3 0.3 0.024 14.1 0.3 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region 2 DUF3099 PF11298.8 CQR55660.1 - 0.16 12.1 4.3 0.25 11.5 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) ABC_tran PF00005.27 CQR55661.1 - 1.1e-09 38.9 0.0 1.9e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55661.1 - 0.00065 19.2 0.2 0.0008 18.9 0.2 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 CQR55661.1 - 0.078 13.2 0.4 0.84 9.9 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF1657 PF07870.11 CQR55662.1 - 1.3e-20 72.9 5.0 1.6e-20 72.7 5.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1657) DUF2383 PF09537.10 CQR55662.1 - 0.0013 19.0 0.7 0.0014 19.0 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Coat_F PF07875.12 CQR55662.1 - 0.0023 18.1 2.0 0.0029 17.8 2.0 1.1 1 0 0 1 1 1 1 Coat F domain V-SNARE PF05008.15 CQR55662.1 - 0.015 15.6 2.3 0.092 13.1 2.3 1.8 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Gal4_dimer PF03902.13 CQR55662.1 - 0.025 14.7 1.6 0.034 14.3 0.7 1.7 1 1 0 1 1 1 0 Gal4-like dimerisation domain DUF2203 PF09969.9 CQR55662.1 - 0.057 14.1 1.3 0.06 14.1 1.3 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) H-kinase_dim PF02895.14 CQR55662.1 - 0.27 11.7 2.6 0.35 11.3 2.6 1.3 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain DUF2802 PF10975.8 CQR55662.1 - 0.37 11.0 4.9 5.4 7.2 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) DUF421 PF04239.12 CQR55663.1 - 1.2e-32 111.9 0.5 4.5e-32 110.0 0.2 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF421) DUF1657 PF07870.11 CQR55663.1 - 6.5e-20 70.8 0.8 1.1e-19 70.0 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1657) Peptidase_U4 PF03419.13 CQR55663.1 - 0.11 11.8 2.2 0.14 11.4 2.2 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA XK-related PF09815.9 CQR55663.1 - 0.12 11.4 3.9 0.15 11.1 3.9 1.1 1 0 0 1 1 1 0 XK-related protein AgrD PF05931.11 CQR55663.1 - 0.64 10.1 3.2 37 4.5 0.0 3.4 3 0 0 3 3 3 0 Staphylococcal AgrD protein HepII_C PF18675.1 CQR55664.1 - 0.14 12.3 2.2 8.2 6.6 0.2 3.0 2 0 0 2 2 2 0 Heparinase II C-terminal domain Hamartin PF04388.12 CQR55664.1 - 1 8.0 3.3 1.5 7.4 3.3 1.2 1 0 0 1 1 1 0 Hamartin protein AAA_3 PF07726.11 CQR55665.1 - 9.7e-65 216.3 0.0 1.7e-64 215.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 CQR55665.1 - 5.7e-20 70.9 2.8 6.2e-20 70.8 1.1 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 CQR55665.1 - 8.3e-17 61.5 0.0 1.4e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 CQR55665.1 - 1.2e-07 32.2 0.0 3e-07 30.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 CQR55665.1 - 3.9e-07 29.7 0.3 0.0093 15.4 0.1 2.6 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 CQR55665.1 - 5.3e-07 29.0 0.0 9.2e-07 28.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 CQR55665.1 - 6.3e-06 26.0 0.0 2.8e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 CQR55665.1 - 7.8e-05 22.5 0.0 0.00068 19.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF647 PF04884.14 CQR55665.1 - 0.041 13.5 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Vitamin B6 photo-protection and homoeostasis AAA_22 PF13401.6 CQR55665.1 - 0.11 12.8 0.0 0.43 10.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_2 PF07724.14 CQR55665.1 - 0.11 12.6 0.0 0.49 10.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 CQR55665.1 - 0.11 13.0 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF58 PF01882.18 CQR55666.1 - 3.6e-16 59.2 0.0 7.2e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 RsgA_N PF16745.5 CQR55666.1 - 0.18 11.6 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA N-terminal domain DUF4129 PF13559.6 CQR55667.1 - 0.0009 19.5 3.1 0.0025 18.0 3.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) NapE PF06796.11 CQR55667.1 - 0.062 12.8 0.4 1.4 8.5 0.3 2.7 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE Rick_17kDa_Anti PF05433.15 CQR55667.1 - 0.064 13.1 0.5 0.064 13.1 0.5 3.3 4 0 0 4 4 4 0 Glycine zipper 2TM domain MerR_1 PF13411.6 CQR55668.1 - 1.8e-17 63.2 0.3 2.5e-17 62.7 0.3 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR55668.1 - 3.1e-16 58.9 0.3 4.9e-16 58.2 0.3 1.3 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR55668.1 - 1.9e-07 31.5 0.4 2.9e-07 30.9 0.4 1.3 1 0 0 1 1 1 1 MerR, DNA binding DUF1836 PF08876.11 CQR55668.1 - 0.0011 19.0 0.0 0.002 18.2 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1836) Abhydrolase_3 PF07859.13 CQR55669.1 - 9.7e-46 156.3 0.0 1.2e-45 155.9 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Say1_Mug180 PF10340.9 CQR55669.1 - 3.3e-08 32.8 0.0 9.1e-08 31.4 0.0 1.7 2 0 0 2 2 2 1 Steryl acetyl hydrolase Thioesterase PF00975.20 CQR55669.1 - 8.6e-05 22.8 0.0 0.00015 22.0 0.0 1.4 1 1 0 1 1 1 1 Thioesterase domain COesterase PF00135.28 CQR55669.1 - 0.0023 16.9 0.0 0.0048 15.8 0.0 1.4 2 0 0 2 2 2 1 Carboxylesterase family Abhydrolase_2 PF02230.16 CQR55669.1 - 0.0074 16.1 0.0 0.023 14.5 0.0 1.8 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase ADH_zinc_N_2 PF13602.6 CQR55670.1 - 3.2e-19 70.3 0.1 8.9e-19 68.9 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 CQR55670.1 - 2.9e-11 43.5 0.2 5.3e-11 42.6 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 CQR55670.1 - 3.6e-11 42.9 0.0 3.2e-10 39.8 0.0 2.3 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 CQR55670.1 - 0.036 14.0 0.2 0.12 12.3 0.2 1.9 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase NolB PF17398.2 CQR55670.1 - 0.15 12.4 0.1 1.4 9.3 0.0 2.2 1 1 1 2 2 2 0 Nodulation protein NolB TetR_N PF00440.23 CQR55671.1 - 8.3e-12 44.7 0.2 1.5e-11 43.9 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_8 PF14278.6 CQR55671.1 - 0.00087 19.4 0.9 0.0026 17.8 0.1 2.0 1 1 2 3 3 3 1 Transcriptional regulator C-terminal region HTH_Tnp_1_2 PF13022.6 CQR55671.1 - 0.015 15.4 0.2 0.034 14.3 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HEPN_AbiU2 PF18734.1 CQR55671.1 - 0.029 13.9 0.1 0.052 13.1 0.0 1.4 1 1 0 1 1 1 0 AbiU2 HTH_AraC PF00165.23 CQR55671.1 - 0.13 12.4 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Glyco_hydro_42 PF02449.15 CQR55673.1 - 1.5e-121 406.3 5.0 1.8e-121 406.0 5.0 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 CQR55673.1 - 5.5e-38 130.5 0.0 8.7e-38 129.9 0.0 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_42C PF08533.10 CQR55673.1 - 4e-14 52.1 0.0 1.1e-13 50.6 0.0 1.8 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain Cellulase PF00150.18 CQR55673.1 - 8.4e-06 25.4 0.1 2e-05 24.2 0.1 1.6 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_14 PF01373.17 CQR55673.1 - 0.0049 15.9 0.1 0.013 14.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 14 HTH_18 PF12833.7 CQR55674.1 - 1.9e-22 79.3 0.7 2.8e-22 78.8 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55674.1 - 1.6e-19 69.5 0.1 5.8e-09 35.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55674.1 - 1.6e-12 47.5 0.7 2.4e-12 46.9 0.7 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR55674.1 - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Cupin domain HTH_31 PF13560.6 CQR55674.1 - 0.087 13.2 0.4 4.6 7.7 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain ABC_tran PF00005.27 CQR55676.1 - 1.4e-35 122.8 0.0 2.1e-35 122.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55676.1 - 3.3e-06 26.7 0.9 7.9e-05 22.2 0.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR55676.1 - 2.8e-05 23.8 0.1 5.3e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR55676.1 - 0.00018 21.5 0.3 0.00048 20.1 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase G-alpha PF00503.20 CQR55676.1 - 0.0095 15.1 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 G-protein alpha subunit AAA_21 PF13304.6 CQR55676.1 - 0.012 15.5 3.2 0.2 11.4 0.1 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR55676.1 - 0.012 15.3 0.6 4.5 6.9 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 CQR55676.1 - 0.039 14.4 0.0 0.041 14.3 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 CQR55676.1 - 0.063 13.3 0.2 0.46 10.5 0.0 2.0 2 0 0 2 2 2 0 Dynamin family DUF3987 PF13148.6 CQR55676.1 - 0.067 12.2 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) APS_kinase PF01583.20 CQR55676.1 - 0.067 13.1 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 CQR55676.1 - 0.075 13.1 0.6 0.15 12.1 0.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 CQR55676.1 - 0.082 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin KAP_NTPase PF07693.14 CQR55676.1 - 0.086 12.1 0.0 0.11 11.7 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain NACHT PF05729.12 CQR55676.1 - 0.16 11.9 0.3 1.5 8.7 0.1 2.1 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 CQR55676.1 - 0.18 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsX PF02687.21 CQR55677.1 - 1.7e-16 60.5 13.2 2.4e-15 56.8 5.5 3.1 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 CQR55677.1 - 2.2e-07 31.4 10.4 2.5e-06 28.0 0.4 3.0 3 0 0 3 3 3 2 MacB-like periplasmic core domain QLQ PF08880.11 CQR55677.1 - 0.13 12.0 1.1 0.28 10.9 0.2 2.0 2 0 0 2 2 2 0 QLQ Cytochrom_B_C PF00032.17 CQR55677.1 - 0.53 10.6 2.2 1.4 9.3 2.2 1.6 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD HlyD_3 PF13437.6 CQR55678.1 - 1.7e-12 48.0 2.1 2e-08 34.9 0.1 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 CQR55678.1 - 1.5e-11 43.9 5.3 4.2e-11 42.5 5.3 1.7 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 CQR55678.1 - 2.6e-08 33.6 0.0 1.2e-07 31.4 0.0 2.2 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD PF00529.20 CQR55678.1 - 4.6e-08 32.8 0.0 4.1e-07 29.8 0.0 2.1 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 CQR55678.1 - 0.0028 17.4 3.2 0.023 14.5 0.1 2.8 2 0 0 2 2 2 1 Biotin-requiring enzyme Wzz PF02706.15 CQR55678.1 - 0.075 13.3 2.7 2 8.8 0.7 2.7 1 1 1 2 2 2 0 Chain length determinant protein Glyco_hydro_3 PF00933.21 CQR55679.1 - 1.8e-90 303.5 0.1 2.6e-90 303.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain DUF1180 PF06679.12 CQR55679.1 - 5.6 7.3 6.0 1.9 8.9 2.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) Ferritin PF00210.24 CQR55680.1 - 3.9e-39 133.8 6.2 4.5e-39 133.6 6.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 CQR55680.1 - 0.00022 21.6 7.2 0.0016 18.8 6.9 2.2 1 1 1 2 2 2 1 Rubrerythrin Myb_Cef PF11831.8 CQR55680.1 - 0.046 13.3 0.1 0.06 12.9 0.1 1.2 1 0 0 1 1 1 0 pre-mRNA splicing factor component DUF2400 PF09674.10 CQR55680.1 - 0.059 13.4 0.2 0.073 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Cation_efflux PF01545.21 CQR55681.1 - 6.8e-51 172.8 5.8 8e-51 172.6 5.8 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 CQR55681.1 - 2.9e-19 69.0 3.2 4.2e-19 68.4 3.2 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DsbD_2 PF13386.6 CQR55681.1 - 0.096 12.6 4.7 1 9.2 0.2 2.6 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region YiaAB PF05360.14 CQR55681.1 - 1.4 9.2 6.6 47 4.3 0.2 3.7 3 0 0 3 3 3 0 yiaA/B two helix domain DEDD_Tnp_IS110 PF01548.17 CQR55682.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR55682.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR55682.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR55682.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DSX_dimer PF08828.10 CQR55683.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR55683.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain SBP_bac_1 PF01547.25 CQR55684.1 - 1.3e-22 81.2 0.0 2.1e-22 80.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR55684.1 - 1.4e-21 77.6 0.0 2e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GntR PF00392.21 CQR55684.1 - 2e-13 49.8 0.0 3.9e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family SBP_bac_11 PF13531.6 CQR55684.1 - 3.4e-10 40.0 0.0 1.3e-09 38.2 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR55684.1 - 2.1e-07 30.6 0.0 0.00031 20.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein HTH_36 PF13730.6 CQR55684.1 - 0.058 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LysR_substrate PF03466.20 CQR55684.1 - 0.085 12.2 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 0 LysR substrate binding domain SBP_bac_1 PF01547.25 CQR55685.1 - 2e-22 80.6 2.1 3.6e-22 79.7 2.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR55685.1 - 1.4e-12 48.1 1.2 2.8e-12 47.0 1.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR55685.1 - 0.00027 21.6 1.3 0.00057 20.5 1.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3502) DUF3235 PF11574.8 CQR55685.1 - 0.087 13.7 0.1 21 6.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) BPD_transp_1 PF00528.22 CQR55686.1 - 1.5e-11 44.4 15.8 1.5e-11 44.4 15.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR55687.1 - 8.4e-16 58.2 12.2 8.4e-16 58.2 12.2 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ADH_zinc_N PF00107.26 CQR55688.1 - 2.8e-14 53.2 0.1 7.2e-14 51.9 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 CQR55688.1 - 1e-06 29.9 0.0 2.4e-06 28.6 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 CQR55688.1 - 2.1e-05 24.0 0.1 4.3e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_N PF08240.12 CQR55688.1 - 0.00022 21.1 0.0 0.00049 20.0 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 CQR55688.1 - 0.00049 19.4 1.1 0.0011 18.3 1.1 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 CQR55688.1 - 0.0043 17.0 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_N_2 PF16884.5 CQR55688.1 - 0.005 16.7 0.0 0.04 13.8 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase NAD_binding_2 PF03446.15 CQR55688.1 - 0.011 15.9 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 CQR55688.1 - 0.025 15.1 0.1 0.046 14.2 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.18 CQR55688.1 - 0.069 13.4 0.2 0.13 12.5 0.2 1.5 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 CQR55688.1 - 0.17 11.9 0.1 0.3 11.1 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PQQ_3 PF13570.6 CQR55689.1 - 7.6e-06 26.2 9.7 3.5 8.3 0.0 8.1 8 1 0 8 8 8 1 PQQ-like domain Reg_prop PF07494.11 CQR55689.1 - 0.00053 19.9 0.1 17 6.1 0.0 5.5 6 0 0 6 6 6 1 Two component regulator propeller Kelch_1 PF01344.25 CQR55689.1 - 0.016 14.8 0.3 27 4.4 0.0 4.2 3 0 0 3 3 3 0 Kelch motif DUF5074 PF16819.5 CQR55689.1 - 0.044 13.8 0.0 1.2 9.3 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5074) ANAPC4_WD40 PF12894.7 CQR55689.1 - 0.049 13.9 0.0 19 5.7 0.0 3.5 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain Kelch_4 PF13418.6 CQR55689.1 - 0.39 10.8 5.9 8.2 6.5 0.0 4.2 5 0 0 5 5 5 0 Galactose oxidase, central domain Glycos_transf_1 PF00534.20 CQR55690.1 - 8.2e-23 80.8 0.0 1.3e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR55690.1 - 2.4e-18 66.9 0.0 6.3e-18 65.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR55690.1 - 6.3e-11 42.5 0.1 2e-10 40.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR55690.1 - 9.9e-07 28.9 0.0 1.6e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 GFO_IDH_MocA PF01408.22 CQR55691.1 - 2.5e-06 28.3 0.0 4.7e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold RraA-like PF03737.15 CQR55692.1 - 6.1e-35 120.6 0.5 8e-35 120.2 0.5 1.1 1 0 0 1 1 1 1 Aldolase/RraA adh_short_C2 PF13561.6 CQR55693.1 - 9.7e-71 238.0 1.0 1.2e-70 237.7 1.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR55693.1 - 5e-60 202.3 0.1 5.9e-60 202.1 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR55693.1 - 4e-13 49.7 0.5 6.2e-13 49.0 0.5 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR55693.1 - 1.4e-06 28.0 0.3 2.9e-06 26.9 0.3 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 CQR55693.1 - 0.00024 20.4 0.0 0.0003 20.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 CQR55693.1 - 0.0061 15.7 0.1 0.011 14.8 0.1 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain Methyltransf_25 PF13649.6 CQR55693.1 - 0.03 15.0 0.1 0.094 13.4 0.1 1.9 1 1 1 2 2 2 0 Methyltransferase domain NAD_binding_7 PF13241.6 CQR55693.1 - 0.046 14.2 0.1 0.33 11.4 0.1 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding GDP_Man_Dehyd PF16363.5 CQR55693.1 - 0.07 12.5 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase 3HCDH_N PF02737.18 CQR55693.1 - 0.13 12.1 0.1 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amidohydro_2 PF04909.14 CQR55694.1 - 3.6e-38 132.0 0.6 4.6e-38 131.7 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase ILVD_EDD PF00920.21 CQR55695.1 - 4e-181 603.1 0.1 4.5e-181 603.0 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family Epimerase PF01370.21 CQR55696.1 - 1.5e-05 24.6 0.0 2.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 CQR55696.1 - 0.041 13.4 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family DHDPS PF00701.22 CQR55697.1 - 0.015 14.0 0.0 0.028 13.2 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family TetR_N PF00440.23 CQR55698.1 - 2.8e-12 46.2 0.4 4.3e-12 45.6 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_8 PF14278.6 CQR55698.1 - 0.0058 16.7 0.1 0.038 14.1 0.0 2.2 1 1 1 2 2 2 1 Transcriptional regulator C-terminal region HTH_Tnp_1_2 PF13022.6 CQR55698.1 - 0.016 15.4 0.1 0.028 14.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HAD_2 PF13419.6 CQR55698.1 - 0.023 14.8 0.3 6 6.9 0.0 2.1 1 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ApbA PF02558.16 CQR55699.1 - 1.8e-16 60.1 0.0 3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 CQR55699.1 - 0.00042 20.8 0.3 0.0014 19.1 0.0 2.0 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 CQR55699.1 - 0.00045 19.5 0.0 0.00095 18.5 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR55699.1 - 0.0012 19.3 0.1 0.0066 17.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 CQR55699.1 - 0.0014 19.0 0.0 0.003 18.0 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 CQR55699.1 - 0.0042 17.0 0.0 0.0079 16.1 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 CQR55699.1 - 0.02 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 CQR55699.1 - 0.043 13.2 0.1 0.077 12.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 CQR55699.1 - 0.05 13.8 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Ribonuc_L-PSP PF01042.21 CQR55699.1 - 0.058 13.4 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Endoribonuclease L-PSP UDPG_MGDP_dh_N PF03721.14 CQR55699.1 - 0.062 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.21 CQR55699.1 - 0.14 11.5 0.1 0.24 10.7 0.1 1.3 1 0 0 1 1 1 0 ThiF family Alpha-amylase PF00128.24 CQR55700.1 - 1.1e-69 235.6 2.0 1.6e-69 235.0 2.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.19 CQR55700.1 - 3.9e-25 87.6 0.6 1.1e-24 86.2 0.6 1.8 1 0 0 1 1 1 1 Starch binding domain TIG PF01833.24 CQR55700.1 - 3.8e-10 39.7 12.4 1.4e-09 37.9 5.5 3.4 2 1 1 3 3 3 1 IPT/TIG domain Malt_amylase_C PF16657.5 CQR55700.1 - 0.07 13.3 0.0 0.19 11.8 0.0 1.8 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain DUF5008 PF16400.5 CQR55700.1 - 0.53 10.4 2.2 0.77 9.9 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5008) NUDIX PF00293.28 CQR55702.1 - 1.7e-12 47.5 0.0 4.5e-12 46.1 0.0 1.7 1 1 1 2 2 2 1 NUDIX domain PBSX_XtrA PF17356.2 CQR55702.1 - 0.14 12.0 0.4 0.35 10.8 0.4 1.6 1 0 0 1 1 1 0 Phage-like element PBSX protein XtrA DUF1768 PF08719.11 CQR55703.1 - 1.2e-52 178.4 0.0 1.4e-52 178.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1768) DUF2263 PF10021.9 CQR55704.1 - 6.6e-52 175.8 0.0 8.4e-52 175.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2263) Hemerythrin PF01814.23 CQR55705.1 - 3.5e-12 47.1 0.4 4.2e-12 46.8 0.4 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain RB_A PF01858.17 CQR55705.1 - 0.024 14.5 0.8 0.3 10.9 0.4 2.0 2 0 0 2 2 2 0 Retinoblastoma-associated protein A domain LuxT_C PF18285.1 CQR55705.1 - 0.037 14.6 0.3 0.094 13.3 0.3 1.8 1 1 0 1 1 1 0 Tetracycline repressor LuxT C-terminal domain Metallophos PF00149.28 CQR55706.1 - 2.9e-11 44.2 0.1 8.2e-11 42.8 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR55706.1 - 2.9e-10 40.6 0.1 5e-10 39.8 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4727 PF15856.5 CQR55706.1 - 0.18 11.4 0.0 0.39 10.3 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4727) MarR PF01047.22 CQR55707.1 - 2.3e-09 37.0 0.0 3.8e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR55707.1 - 2.1e-08 33.9 0.1 4.1e-08 33.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 CQR55707.1 - 3.3e-07 30.4 0.0 6.3e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 CQR55707.1 - 4e-05 24.0 0.0 0.00012 22.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 CQR55707.1 - 0.0007 19.5 0.1 0.007 16.3 0.0 2.3 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR55707.1 - 0.0059 16.1 0.1 0.0093 15.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 CQR55707.1 - 0.0095 16.1 0.0 0.032 14.4 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HxlR PF01638.17 CQR55707.1 - 0.016 15.1 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.14 CQR55707.1 - 0.026 14.5 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TPR_8 PF13181.6 CQR55709.1 - 9.5e-10 37.9 0.4 0.0015 18.6 0.0 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 CQR55709.1 - 1.6e-07 31.9 0.5 4.4e-05 24.0 0.2 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 CQR55709.1 - 2.4e-07 30.3 0.2 0.027 14.6 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 CQR55709.1 - 5.4e-07 29.2 0.2 0.059 13.2 0.0 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 CQR55709.1 - 4e-05 23.3 0.2 0.21 11.7 0.4 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 CQR55709.1 - 5.3e-05 22.8 0.0 0.00019 21.0 0.0 2.0 2 0 0 2 2 2 1 TPR repeat TPR_17 PF13431.6 CQR55709.1 - 0.001 19.3 0.0 0.76 10.3 0.0 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 CQR55709.1 - 0.0012 19.1 0.2 0.014 15.7 0.1 2.3 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 CQR55709.1 - 0.0068 17.1 0.2 8.4 7.5 0.0 3.1 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 CQR55709.1 - 0.033 14.7 0.1 2.2 8.8 0.1 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 CQR55709.1 - 0.046 13.9 0.1 0.27 11.4 0.1 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR55709.1 - 0.082 13.1 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 SEC-C PF02810.15 CQR55710.1 - 5.5e-06 26.2 6.8 7.7e-06 25.7 6.8 1.2 1 0 0 1 1 1 1 SEC-C motif NmrA PF05368.13 CQR55711.1 - 4.3e-19 69.0 0.0 8.4e-19 68.0 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 CQR55711.1 - 3.9e-18 66.0 0.6 8e-18 65.0 0.6 1.5 1 1 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 CQR55711.1 - 3.8e-05 22.8 0.0 5.9e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 CQR55711.1 - 0.0023 17.1 1.5 0.3 10.1 1.4 2.6 1 1 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 CQR55711.1 - 0.0037 16.8 0.3 0.01 15.3 0.3 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 CQR55711.1 - 0.0045 16.2 0.1 0.0077 15.4 0.1 1.3 1 0 0 1 1 1 1 Male sterility protein TrkA_N PF02254.18 CQR55711.1 - 0.012 15.9 0.4 0.026 14.8 0.3 1.6 2 0 0 2 2 2 0 TrkA-N domain DapB_N PF01113.20 CQR55711.1 - 0.11 12.6 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Response_reg PF00072.24 CQR55712.1 - 4.6e-29 100.8 0.1 6.5e-29 100.4 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55712.1 - 1.6e-23 82.6 0.0 4e-23 81.3 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR55712.1 - 0.04 14.2 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c PF02518.26 CQR55713.1 - 1.5e-29 102.8 0.0 2.9e-29 101.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55713.1 - 1.4e-17 63.4 1.4 1.7e-17 63.2 0.2 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55713.1 - 2.1e-10 40.8 0.1 6.5e-10 39.2 0.0 1.8 2 0 0 2 2 2 1 HAMP domain HATPase_c_5 PF14501.6 CQR55713.1 - 4.7e-06 26.4 0.0 4.3e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 CQR55713.1 - 0.0039 17.1 0.0 0.0087 16.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR55713.1 - 0.0046 16.8 0.0 0.0099 15.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SirA PF10747.9 CQR55713.1 - 0.15 12.4 0.0 0.4 11.0 0.0 1.7 2 0 0 2 2 2 0 Sporulation inhibitor of replication protein SirA FtsX PF02687.21 CQR55714.1 - 1.4e-05 25.5 7.2 1.4e-05 25.5 7.2 3.5 2 1 1 3 3 3 1 FtsX-like permease family SUR7 PF06687.12 CQR55714.1 - 0.0054 16.4 9.2 0.0054 16.4 9.2 2.4 2 1 0 2 2 2 1 SUR7/PalI family Orf78 PF06024.12 CQR55714.1 - 0.029 14.7 0.5 0.029 14.7 0.5 2.7 3 0 0 3 3 3 0 Orf78 (ac78) DUF3139 PF11337.8 CQR55714.1 - 0.66 10.7 3.8 45 4.8 2.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Viral_Beta_CD PF04530.12 CQR55714.1 - 1 9.6 5.8 0.38 11.1 0.3 2.6 3 0 0 3 3 3 0 Viral Beta C/D like family DUF4212 PF13937.6 CQR55714.1 - 2.5 8.5 8.6 4.3 7.8 0.0 3.1 2 1 0 3 3 3 0 Domain of unknown function (DUF4212) Claudin_3 PF06653.11 CQR55714.1 - 2.7 7.9 15.8 0.32 10.9 8.8 2.3 2 1 0 2 2 2 0 Tight junction protein, Claudin-like ABC_tran PF00005.27 CQR55715.1 - 1.3e-32 113.1 0.0 1.8e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55715.1 - 3.4e-08 33.2 0.0 5e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR55715.1 - 8.9e-07 28.6 0.1 1.7e-06 27.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR55715.1 - 0.00033 20.6 0.0 0.076 12.8 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR55715.1 - 0.00038 20.9 0.0 0.00046 20.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 CQR55715.1 - 0.0039 16.8 0.2 0.014 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 CQR55715.1 - 0.019 14.0 0.1 0.026 13.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_27 PF13514.6 CQR55715.1 - 0.034 13.8 0.1 0.063 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 CQR55715.1 - 0.052 12.6 0.0 0.14 11.1 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3987) AAA_30 PF13604.6 CQR55715.1 - 0.055 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR55715.1 - 0.06 13.8 0.4 0.1 13.1 0.4 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR55715.1 - 0.066 12.9 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 CQR55715.1 - 0.1 12.5 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 CQR55715.1 - 0.1 12.3 0.0 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein FliC PF12445.8 CQR55715.1 - 0.18 12.1 0.2 0.39 11.1 0.2 1.6 1 0 0 1 1 1 0 Flagellin protein Dimer_Tnp_Tn5 PF02281.16 CQR55716.1 - 1.7e-16 59.8 0.0 2.8e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Transposase Tn5 dimerisation domain Tnp_DNA_bind PF14706.6 CQR55716.1 - 0.0026 17.6 0.1 0.0061 16.4 0.1 1.6 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.21 CQR55716.1 - 0.0035 17.0 0.0 0.0069 16.1 0.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain YjbF PF11102.8 CQR55716.1 - 0.039 13.7 0.1 0.089 12.6 0.1 1.7 1 0 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF DUF1304 PF06993.12 CQR55717.1 - 0.0054 16.7 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1304) HTH_3 PF01381.22 CQR55718.1 - 5.2e-16 58.4 0.1 5.8e-16 58.3 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR55718.1 - 1.8e-13 50.3 0.1 2.1e-13 50.1 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR55718.1 - 2.5e-09 37.4 0.0 2.7e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR55718.1 - 2.9e-06 27.0 0.0 3.6e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR55718.1 - 5.8e-06 26.6 0.0 6.8e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 CQR55718.1 - 2.4e-05 23.8 0.1 3.5e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 CQR55718.1 - 0.00022 21.2 0.1 0.00027 20.8 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_37 PF13744.6 CQR55718.1 - 0.00094 19.1 0.1 0.0011 18.9 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR55718.1 - 0.0013 18.2 0.1 0.0019 17.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MqsA_antitoxin PF15731.5 CQR55718.1 - 0.0024 18.0 0.0 0.0025 17.9 0.0 1.0 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_17 PF12728.7 CQR55718.1 - 0.0046 17.1 0.0 0.0057 16.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR55718.1 - 0.0067 16.4 0.1 0.0091 15.9 0.1 1.2 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 CQR55718.1 - 0.008 15.9 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR55718.1 - 0.0083 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 CQR55718.1 - 0.029 14.3 0.0 0.062 13.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 CQR55718.1 - 0.03 14.0 0.0 0.13 12.0 0.0 1.8 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 CQR55718.1 - 0.03 14.1 0.1 0.044 13.6 0.1 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.22 CQR55718.1 - 0.057 13.4 0.1 0.089 12.7 0.1 1.2 1 0 0 1 1 1 0 MarR family YdaS_antitoxin PF15943.5 CQR55718.1 - 0.059 13.2 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Phage_CI_repr PF07022.13 CQR55718.1 - 0.065 13.3 0.0 0.071 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF1013 PF06242.11 CQR55718.1 - 0.069 13.2 0.0 0.078 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) CENP-B_N PF04218.13 CQR55718.1 - 0.07 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_psq PF05225.16 CQR55718.1 - 0.13 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_28 PF13518.6 CQR55718.1 - 0.16 12.2 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sortilin-Vps10 PF15902.5 CQR55719.1 - 1.6e-17 63.4 0.0 2.3e-05 23.4 0.0 5.9 4 1 2 6 6 6 5 Sortilin, neurotensin receptor 3, BNR PF02012.20 CQR55719.1 - 5.4e-09 34.7 50.3 2.9 8.2 0.2 12.1 12 0 0 12 12 12 7 BNR/Asp-box repeat BNR_2 PF13088.6 CQR55719.1 - 1.3e-06 28.0 4.3 0.024 13.9 0.7 5.4 3 2 0 3 3 3 2 BNR repeat-like domain DUF4185 PF13810.6 CQR55719.1 - 0.45 9.7 21.8 2 7.6 0.1 7.2 4 3 4 8 8 8 0 Domain of unknown function (DUF4185) BNR_6 PF15899.5 CQR55719.1 - 2.5 8.4 9.0 3 8.1 0.0 4.9 5 0 0 5 5 5 0 BNR-Asp box repeat Glyco_hydro_26 PF02156.15 CQR55720.1 - 3.9e-59 200.6 4.2 5.5e-59 200.1 4.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 CBM_11 PF03425.13 CQR55720.1 - 4.2e-16 59.3 1.5 2.2e-15 57.0 0.0 2.7 3 0 0 3 3 3 1 Carbohydrate binding domain (family 11) fn3 PF00041.21 CQR55720.1 - 9.3e-15 54.7 0.7 9.2e-07 29.1 0.0 3.1 3 0 0 3 3 3 2 Fibronectin type III domain CBM_4_9 PF02018.17 CQR55720.1 - 1.7e-13 51.0 5.6 2.3e-08 34.4 0.4 3.5 3 0 0 3 3 3 2 Carbohydrate binding domain CIA30 PF08547.12 CQR55720.1 - 0.00038 20.5 0.1 0.00097 19.2 0.1 1.7 1 0 0 1 1 1 1 Complex I intermediate-associated protein 30 (CIA30) SGBP_B_XBD PF18329.1 CQR55720.1 - 0.24 11.4 2.4 0.65 9.9 0.1 2.9 2 1 0 2 2 2 0 Surface glycan-binding protein B xyloglucan binding domain BPD_transp_1 PF00528.22 CQR55721.1 - 4.1e-14 52.7 12.9 4.1e-14 52.7 12.9 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MNHE PF01899.16 CQR55721.1 - 2.7 7.8 6.8 5.3 6.8 1.4 2.5 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit BPD_transp_1 PF00528.22 CQR55722.1 - 4.2e-14 52.7 16.3 4.2e-14 52.7 16.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3566 PF12089.8 CQR55722.1 - 0.4 11.0 7.2 0.65 10.4 0.3 2.8 2 1 0 2 2 2 0 Transmembrane domain of unknown function (DUF3566) SBP_bac_1 PF01547.25 CQR55723.1 - 1.8e-20 74.2 5.0 1.8e-20 74.2 5.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR55723.1 - 8.9e-06 25.6 0.1 0.14 11.9 0.0 3.2 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein Syd PF07348.12 CQR55723.1 - 0.0076 15.9 0.8 0.012 15.3 0.8 1.3 1 0 0 1 1 1 1 Syd protein (SUKH-2) ThiS PF02597.20 CQR55723.1 - 0.049 14.3 0.0 0.21 12.2 0.0 2.1 2 0 0 2 2 2 0 ThiS family Response_reg PF00072.24 CQR55724.1 - 1.6e-24 86.2 0.0 2.8e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR55724.1 - 2.4e-20 72.6 1.5 7.1e-20 71.1 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55724.1 - 1.5e-12 47.3 0.1 3.4e-07 30.2 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR55724.1 - 3.8e-08 33.6 1.9 1.1e-07 32.2 0.1 2.6 3 0 0 3 3 3 1 GGDEF-like domain DUF2164 PF09932.9 CQR55724.1 - 0.0012 18.8 2.2 0.028 14.4 0.1 3.4 2 1 1 3 3 3 1 Uncharacterized conserved protein (DUF2164) HTH_32 PF13565.6 CQR55724.1 - 0.13 12.9 0.9 0.41 11.3 0.0 2.3 3 0 0 3 3 3 0 Homeodomain-like domain DUF4618 PF15397.6 CQR55724.1 - 0.25 10.7 3.6 1.5 8.2 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) His_kinase PF06580.13 CQR55725.1 - 1.3e-22 79.9 0.3 1.3e-22 79.9 0.3 2.2 2 1 1 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR55725.1 - 1.6e-10 41.2 1.8 1.6e-10 41.2 1.8 1.5 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR55725.1 - 7.5e-09 35.8 0.1 1e-07 32.2 0.0 2.9 3 0 0 3 3 3 1 HAMP domain HATPase_c PF02518.26 CQR55725.1 - 2e-08 34.7 0.0 4.2e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Spore_III_AB PF09548.10 CQR55725.1 - 0.013 15.7 1.0 0.7 10.0 0.1 2.8 2 2 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) HATPase_c_3 PF13589.6 CQR55725.1 - 0.051 13.4 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E2_bind PF08825.10 CQR55725.1 - 0.074 13.2 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 E2 binding domain DUF3180 PF11377.8 CQR55725.1 - 0.086 13.0 0.1 6 7.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) Melibiase PF02065.18 CQR55726.1 - 1.6e-10 40.5 0.0 2.6e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Melibiase GHL10 PF02638.15 CQR55726.1 - 6.6e-05 22.1 0.0 0.00011 21.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 Raffinose_syn PF05691.12 CQR55726.1 - 0.099 10.4 0.0 0.14 9.9 0.0 1.1 1 0 0 1 1 1 0 Raffinose synthase or seed imbibition protein Sip1 Glyco_hydro_66 PF13199.6 CQR55726.1 - 0.14 10.7 0.0 0.72 8.4 0.1 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 66 Methyltransf_25 PF13649.6 CQR55727.1 - 0.00095 19.8 0.0 0.0017 19.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 CQR55727.1 - 0.0022 17.1 0.0 0.0046 16.1 0.0 1.5 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 CQR55727.1 - 0.0087 15.6 0.0 0.02 14.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain DUF2065 PF09838.9 CQR55727.1 - 0.11 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2065) Methyltransf_11 PF08241.12 CQR55727.1 - 0.12 13.0 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 CQR55727.1 - 0.19 11.5 0.0 8.2 6.2 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain PAP2_3 PF14378.6 CQR55728.1 - 1.1e-07 31.7 8.9 2e-07 30.9 8.9 1.4 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 CQR55728.1 - 0.0055 16.5 8.2 0.0055 16.5 8.2 2.0 1 1 1 2 2 2 1 PAP2 superfamily Yip1 PF04893.17 CQR55728.1 - 0.23 11.2 12.9 0.42 10.3 3.7 2.3 2 1 0 2 2 2 0 Yip1 domain Response_reg PF00072.24 CQR55729.1 - 1.9e-30 105.3 0.7 2.6e-30 104.9 0.7 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55729.1 - 1.5e-24 85.9 0.0 7e-24 83.7 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 CQR55729.1 - 0.0017 17.9 0.1 0.032 13.8 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HATPase_c PF02518.26 CQR55730.1 - 6.3e-17 62.1 0.0 1e-16 61.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55730.1 - 3.1e-12 46.3 0.2 1.1e-11 44.6 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55730.1 - 3.1e-10 40.3 0.1 6.7e-10 39.2 0.1 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR55730.1 - 4e-05 23.4 0.0 9.3e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 GHKL domain adh_short PF00106.25 CQR55731.1 - 4.7e-47 160.0 2.4 8.4e-47 159.2 2.4 1.4 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55731.1 - 2.1e-46 158.4 0.4 2.7e-45 154.8 0.4 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55731.1 - 2.5e-09 37.3 3.8 2.4e-08 34.1 1.0 2.1 2 0 0 2 2 2 1 KR domain Shikimate_DH PF01488.20 CQR55731.1 - 0.00017 21.7 0.7 0.00034 20.7 0.7 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 CQR55731.1 - 0.00036 20.7 0.6 0.00095 19.4 0.4 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Epimerase PF01370.21 CQR55731.1 - 0.00037 20.0 0.1 0.00065 19.2 0.1 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 CQR55731.1 - 0.00066 19.9 0.4 0.003 17.8 0.3 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 CQR55731.1 - 0.0099 15.5 0.4 0.041 13.5 0.3 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA GDP_Man_Dehyd PF16363.5 CQR55731.1 - 0.034 13.5 0.5 0.048 13.0 0.0 1.5 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase NAD_binding_8 PF13450.6 CQR55731.1 - 0.044 14.0 0.8 0.12 12.6 0.8 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 CQR55731.1 - 0.092 12.0 2.1 0.17 11.1 2.1 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_4 PF07993.12 CQR55731.1 - 0.15 11.2 0.1 0.24 10.5 0.1 1.3 1 0 0 1 1 1 0 Male sterility protein 3HCDH_N PF02737.18 CQR55731.1 - 0.23 11.3 2.9 0.4 10.6 2.4 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_AraC PF00165.23 CQR55732.1 - 3.5e-20 71.6 0.0 5e-11 42.4 0.1 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR55732.1 - 5.6e-19 68.2 0.0 1.3e-18 67.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR55732.1 - 0.0014 18.6 0.0 0.0022 17.9 0.0 1.4 1 1 0 1 1 1 1 AraC-like ligand binding domain GFO_IDH_MocA PF01408.22 CQR55733.1 - 5.6e-23 82.0 0.0 8.8e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55733.1 - 1.5e-10 41.1 0.1 2.7e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 CQR55733.1 - 5.9e-05 23.6 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CQR55733.1 - 0.021 15.0 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DEDD_Tnp_IS110 PF01548.17 CQR55733.1 - 0.068 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Transposase AP_endonuc_2 PF01261.24 CQR55734.1 - 5.9e-15 55.3 0.1 3.6e-14 52.7 0.1 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel GFO_IDH_MocA PF01408.22 CQR55735.1 - 3.1e-06 28.0 0.0 7.9e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55735.1 - 0.00037 20.5 0.0 0.0011 19.0 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Arm-DNA-bind_3 PF13356.6 CQR55735.1 - 0.18 12.2 0.2 0.4 11.1 0.2 1.6 1 0 0 1 1 1 0 Arm DNA-binding domain GFO_IDH_MocA PF01408.22 CQR55736.1 - 8.8e-24 84.6 0.5 1.4e-23 84.0 0.5 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55736.1 - 2.6e-08 33.9 0.0 5.4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR55736.1 - 1.5e-06 28.8 0.1 2.2e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 CQR55736.1 - 0.00057 18.9 0.1 0.00095 18.2 0.1 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 CQR55736.1 - 0.012 16.1 0.1 0.026 15.1 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF2274 PF10038.9 CQR55736.1 - 0.038 14.4 0.0 0.064 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2274) 2-Hacid_dh_C PF02826.19 CQR55736.1 - 0.039 13.3 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PMSR PF01625.21 CQR55737.1 - 6.1e-59 198.6 0.2 7e-59 198.4 0.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Glyco_hydro_64 PF16483.5 CQR55738.1 - 2.5e-59 201.4 10.7 4.6e-40 138.0 0.2 2.5 2 1 1 3 3 3 2 Beta-1,3-glucanase SLH PF00395.20 CQR55739.1 - 3.7e-26 90.9 0.1 3.3e-09 36.6 0.0 3.7 3 0 0 3 3 3 3 S-layer homology domain SQHop_cyclase_N PF13249.6 CQR55739.1 - 1.8e-09 37.1 0.2 1.8e-05 24.0 0.0 3.2 1 1 1 2 2 2 2 Squalene-hopene cyclase N-terminal domain Prenyltrans PF00432.21 CQR55739.1 - 1.8e-06 27.6 3.5 0.2 11.4 0.0 4.3 3 1 0 3 3 3 3 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 CQR55739.1 - 0.013 14.6 0.2 0.051 12.7 0.1 1.6 1 1 1 2 2 2 0 Squalene-hopene cyclase C-terminal domain M16C_assoc PF08367.11 CQR55740.1 - 9.9e-66 221.4 1.7 2.8e-65 220.0 0.4 2.0 2 0 0 2 2 2 1 Peptidase M16C associated Peptidase_M16_C PF05193.21 CQR55740.1 - 3.2e-21 76.2 4.0 1.5e-18 67.5 0.1 3.2 3 0 0 3 3 3 2 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 CQR55740.1 - 2.5e-07 30.8 0.1 1.6e-06 28.2 0.0 2.3 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) UDPGT PF00201.18 CQR55741.1 - 1.1e-26 93.7 0.1 1.7e-22 79.9 0.0 2.5 3 0 0 3 3 3 2 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_tran_28_C PF04101.16 CQR55741.1 - 6.8e-11 42.4 0.0 1.2e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 CQR55741.1 - 6.2e-07 29.5 0.0 1.7e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain DUF1487 PF07368.11 CQR55741.1 - 0.042 13.3 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) DUF1205 PF06722.12 CQR55741.1 - 0.14 12.3 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1205) PAS_9 PF13426.7 CQR55742.1 - 9.7e-31 106.1 0.2 4.2e-16 59.1 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 CQR55742.1 - 6.5e-30 103.9 0.1 1.5e-29 102.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR55742.1 - 6.3e-26 90.7 0.3 1.6e-25 89.4 0.3 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 CQR55742.1 - 9.6e-21 73.6 0.0 3.8e-20 71.7 0.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 CQR55742.1 - 2.8e-19 69.2 0.0 4.4e-09 36.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 CQR55742.1 - 3e-18 66.1 0.0 2.3e-08 34.2 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 CQR55742.1 - 8.3e-13 48.0 0.1 3.7e-08 33.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 CQR55742.1 - 2.3e-11 43.8 0.0 9.1e-10 38.7 0.0 2.6 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 CQR55742.1 - 0.0047 16.8 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55742.1 - 0.016 15.2 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HAD_2 PF13419.6 CQR55743.1 - 1.4e-28 100.2 0.0 1.7e-28 99.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR55743.1 - 4.1e-16 59.9 0.1 1.2e-13 51.8 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR55743.1 - 9.6e-13 49.0 0.0 1.5e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR55743.1 - 2.1e-11 43.7 0.2 3.9e-11 42.9 0.2 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 CQR55743.1 - 2.6e-07 30.7 0.1 0.0021 17.8 0.0 2.7 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 CQR55743.1 - 0.0089 15.4 0.0 0.018 14.4 0.0 1.6 1 1 0 1 1 1 1 Putative Phosphatase Hydrolase_6 PF13344.6 CQR55743.1 - 0.013 15.6 0.0 2.6 8.2 0.0 2.5 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase tRNA-synt_2b PF00587.25 CQR55744.1 - 1e-39 136.4 0.0 3e-39 134.8 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 CQR55744.1 - 4.6e-24 84.4 0.1 1.1e-23 83.1 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 CQR55744.1 - 1.2e-17 63.7 0.0 3.3e-17 62.3 0.0 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 CQR55744.1 - 3.8e-12 46.0 0.1 9.8e-12 44.7 0.1 1.8 1 0 0 1 1 1 1 TGS domain Acetyltransf_3 PF13302.7 CQR55745.1 - 6.7e-19 68.9 0.1 1.1e-18 68.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55745.1 - 0.002 18.4 0.0 0.0027 17.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AHSA1 PF08327.11 CQR55746.1 - 1.7e-19 70.3 0.4 2e-19 70.0 0.4 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 CQR55746.1 - 0.03 14.6 1.6 0.041 14.2 1.6 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Sigma70_r4_2 PF08281.12 CQR55747.1 - 2.9e-11 42.9 0.3 5.5e-11 42.0 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR55747.1 - 1.5e-09 37.2 0.1 4.1e-09 35.8 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR55747.1 - 5.2e-08 33.0 0.1 6.2e-08 32.8 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r2 PF04542.14 CQR55747.1 - 1.3e-07 31.3 0.0 2.6e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Phage_antitermQ PF06530.12 CQR55747.1 - 6.9e-05 22.7 0.1 0.00013 21.9 0.1 1.4 1 1 0 1 1 1 1 Phage antitermination protein Q DUF722 PF05263.11 CQR55747.1 - 0.02 15.1 1.4 0.4 10.9 1.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF722) HTH_23 PF13384.6 CQR55747.1 - 0.035 13.9 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Mga PF08280.11 CQR55747.1 - 0.064 13.3 0.3 0.29 11.2 0.1 2.1 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r3 PF04539.16 CQR55747.1 - 0.087 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 Trans_reg_C PF00486.28 CQR55748.1 - 7.4e-13 48.4 0.0 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Amidase_6 PF12671.7 CQR55749.1 - 5.3e-13 49.4 8.3 2.3e-12 47.3 8.3 2.0 1 1 0 1 1 1 1 Putative amidase domain Sipho_Gp157 PF05565.11 CQR55749.1 - 0.056 13.5 0.3 0.089 12.8 0.3 1.3 1 0 0 1 1 1 0 Siphovirus Gp157 THP2 PF09432.10 CQR55749.1 - 0.15 12.1 1.5 0.35 10.9 1.0 1.9 1 1 0 1 1 1 0 Tho complex subunit THP2 SLH PF00395.20 CQR55750.1 - 2.4e-17 62.7 2.9 2.7e-14 52.9 0.1 3.4 4 0 0 4 4 4 2 S-layer homology domain DUF1257 PF06868.11 CQR55750.1 - 0.01 16.1 0.9 0.1 12.9 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1257) HTH_18 PF12833.7 CQR55751.1 - 8.3e-20 70.8 0.1 1.8e-19 69.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55751.1 - 1.9e-13 50.2 0.4 1.6e-07 31.2 0.1 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR55751.1 - 2.3e-07 30.9 12.3 4.2e-07 30.0 6.0 3.1 3 1 0 3 3 3 1 Cache domain GGDEF_2 PF17853.1 CQR55751.1 - 2e-05 24.8 0.0 7e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 GGDEF-like domain Cache_3-Cache_2 PF17201.4 CQR55751.1 - 0.00052 19.4 0.2 0.0009 18.6 0.2 1.3 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain HTH_3 PF01381.22 CQR55751.1 - 0.14 12.3 0.0 0.59 10.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix FixQ PF05545.11 CQR55751.1 - 0.53 10.3 2.5 0.4 10.7 0.2 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DHHC PF01529.20 CQR55751.1 - 1.7 8.7 7.8 0.28 11.3 2.3 2.5 3 0 0 3 3 3 0 DHHC palmitoyltransferase BPD_transp_1 PF00528.22 CQR55752.1 - 2.4e-13 50.2 15.4 2.4e-13 50.2 15.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_LMP1 PF05297.11 CQR55752.1 - 2.3 7.3 5.1 3.6 6.7 5.1 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) BPD_transp_1 PF00528.22 CQR55753.1 - 2.1e-12 47.1 12.6 2.1e-12 47.1 12.6 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF3290 PF11694.8 CQR55753.1 - 0.13 12.2 2.2 0.32 10.9 2.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF3502 PF12010.8 CQR55754.1 - 3.2e-26 92.5 0.4 3.2e-26 92.5 0.4 3.9 3 1 1 4 4 4 1 Domain of unknown function (DUF3502) SBP_bac_8 PF13416.6 CQR55754.1 - 2e-17 63.9 4.6 3.5e-17 63.1 4.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR55754.1 - 7.8e-12 45.8 12.0 9.2e-12 45.5 9.7 2.3 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Phage_min_cap2 PF06152.11 CQR55754.1 - 0.077 11.9 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Phage minor capsid protein 2 DUF1861 PF08950.10 CQR55755.1 - 1e-123 412.4 0.0 1.2e-123 412.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1861) DUF5634 PF18681.1 CQR55755.1 - 0.07 13.5 0.1 0.61 10.5 0.0 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5634) LEF-8 PF04941.12 CQR55755.1 - 0.17 10.1 0.0 0.24 9.6 0.0 1.1 1 0 0 1 1 1 0 Late expression factor 8 (LEF-8) Glyco_hydro_130 PF04041.13 CQR55756.1 - 1.5e-43 149.0 0.0 1.9e-43 148.6 0.0 1.1 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase DUF1861 PF08950.10 CQR55756.1 - 0.0085 15.4 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1861) MFS_1 PF07690.16 CQR55757.1 - 8.4e-27 94.0 57.2 2.4e-25 89.2 48.4 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR55757.1 - 1.2e-06 27.3 26.6 3e-05 22.8 5.1 2.4 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_4 PF06779.14 CQR55757.1 - 0.00014 21.3 21.9 0.00014 21.3 21.9 2.1 1 1 1 2 2 2 2 Uncharacterised MFS-type transporter YbfB DUF2070 PF09843.9 CQR55757.1 - 3.8 5.7 28.5 2.6 6.2 11.4 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) GPI2 PF06432.11 CQR55757.1 - 6.6 6.1 15.1 5.9 6.2 2.7 2.4 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase FCD PF07729.12 CQR55758.1 - 1.1e-21 77.6 8.2 1.8e-21 76.8 8.2 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR55758.1 - 3.5e-19 68.2 0.5 1.4e-18 66.3 0.2 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 CQR55758.1 - 0.00095 19.2 0.8 0.0027 17.7 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR55758.1 - 0.0063 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 CQR55758.1 - 0.014 15.8 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 CQR55758.1 - 0.038 13.8 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RP-C PF03428.13 CQR55758.1 - 0.094 12.4 1.1 0.25 11.0 0.0 2.1 2 1 0 2 2 2 0 Replication protein C N-terminal domain ABC_tran PF00005.27 CQR55759.1 - 5.4e-21 75.5 0.0 7.3e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55759.1 - 1.6e-09 37.5 0.2 1.8e-08 34.1 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR55759.1 - 5.9e-07 29.6 0.0 0.026 14.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 CQR55759.1 - 0.00023 21.6 0.3 0.0056 17.1 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 CQR55759.1 - 0.00059 20.1 0.0 0.022 15.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR55759.1 - 0.00081 19.7 0.3 0.0049 17.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR55759.1 - 0.0012 18.6 0.1 0.0023 17.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR55759.1 - 0.0029 17.5 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 CQR55759.1 - 0.003 18.1 0.0 0.0045 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR55759.1 - 0.0037 17.8 0.1 0.0096 16.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR55759.1 - 0.0039 16.8 0.0 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 CQR55759.1 - 0.01 16.0 0.0 0.015 15.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 CQR55759.1 - 0.013 15.1 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 CQR55759.1 - 0.023 14.7 0.0 0.41 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 CQR55759.1 - 0.03 14.0 0.0 0.037 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 CQR55759.1 - 0.051 13.7 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 CQR55759.1 - 0.059 13.8 0.0 0.069 13.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 CQR55759.1 - 0.08 11.6 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR55759.1 - 0.084 12.6 0.1 0.16 11.7 0.0 1.5 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 CQR55759.1 - 0.089 12.8 0.5 3.6 7.6 0.1 2.6 1 1 2 3 3 3 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 CQR55759.1 - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.17 CQR55760.1 - 1.9e-61 207.5 1.9 2.2e-61 207.3 1.1 1.4 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) ParB_C PF18064.1 CQR55760.1 - 0.064 13.4 0.1 0.17 12.1 0.1 1.7 1 0 0 1 1 1 0 Centromere-binding protein ParB C-terminal UPF0051 PF01458.17 CQR55761.1 - 1.6e-71 240.5 0.3 2.1e-71 240.1 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) NifU PF01106.17 CQR55763.1 - 1.5e-23 82.7 0.1 1.7e-23 82.5 0.1 1.0 1 0 0 1 1 1 1 NifU-like domain DUF2220 PF09983.9 CQR55764.1 - 1e-05 25.0 0.1 4.3e-05 23.0 0.0 2.0 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria C-term(DUF2220) DUF2399 PF09664.10 CQR55764.1 - 0.001 19.0 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Clp_N PF02861.20 CQR55764.1 - 0.066 13.4 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 Clp amino terminal domain, pathogenicity island component tRNA-synt_1e PF01406.19 CQR55765.1 - 0.021 14.2 0.5 0.03 13.7 0.5 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain FAM167 PF11652.8 CQR55765.1 - 0.046 14.2 0.6 0.12 12.9 0.6 1.7 1 0 0 1 1 1 0 FAM167 CorA PF01544.18 CQR55765.1 - 1.3 8.3 7.6 2 7.6 7.6 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein EF-hand_2 PF09068.11 CQR55766.1 - 0.1 12.8 0.3 0.39 10.9 0.3 2.0 1 1 0 1 1 1 0 EF hand DUF2013 PF09431.10 CQR55767.1 - 0.12 12.5 0.1 0.55 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2013) TPM_phosphatase PF04536.14 CQR55768.1 - 2e-51 173.4 2.8 9.3e-31 106.6 0.2 2.2 2 0 0 2 2 2 2 TPM domain MOLO1 PF17175.4 CQR55768.1 - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Modulator of levamisole receptor-1 DUF4111 PF13427.6 CQR55769.1 - 0.14 12.3 2.4 0.61 10.3 2.4 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4111) Baculo_PEP_C PF04513.12 CQR55769.1 - 0.83 9.7 2.9 1 9.4 0.7 2.3 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus PapB PF03333.13 CQR55770.1 - 0.072 13.1 0.4 0.15 12.1 0.4 1.6 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein Baculo_VP1054 PF05789.11 CQR55771.1 - 0.096 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Baculovirus VP1054 protein SUKH_6 PF14568.6 CQR55772.1 - 7.7e-22 78.0 0.6 8.9e-22 77.8 0.6 1.1 1 0 0 1 1 1 1 SMI1-KNR4 cell-wall SMI1_KNR4 PF09346.10 CQR55772.1 - 1.5e-15 57.7 0.5 3e-15 56.8 0.5 1.4 1 1 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) SUKH_5 PF14567.6 CQR55772.1 - 4.5e-08 32.9 0.0 5.7e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_5 PF14567.6 CQR55773.1 - 8.3e-34 116.3 0.1 1e-33 116.0 0.1 1.0 1 0 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_6 PF14568.6 CQR55773.1 - 8.6e-13 48.8 0.3 1.8e-12 47.7 0.3 1.5 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall SMI1_KNR4 PF09346.10 CQR55773.1 - 1.2e-11 45.2 0.3 5.7e-11 42.9 0.3 1.8 1 1 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) BrkDBD PF09607.10 CQR55774.1 - 0.074 12.8 0.5 0.077 12.8 0.5 1.1 1 0 0 1 1 1 0 Brinker DNA-binding domain TetR PF13972.6 CQR55775.1 - 0.0027 17.4 0.1 0.0037 17.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor DUF2004 PF09406.10 CQR55776.1 - 8.8e-12 45.3 0.4 1.9e-11 44.2 0.0 1.7 2 1 0 2 2 2 1 Protein of unknown function (DUF2004) Imm47 PF15573.6 CQR55777.1 - 1.2e-80 270.8 5.6 1.4e-80 270.5 5.6 1.0 1 0 0 1 1 1 1 Immunity protein 47 DUF4375 PF14300.6 CQR55777.1 - 0.043 14.1 0.1 0.093 13.0 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4375) TPR_2 PF07719.17 CQR55778.1 - 3.2e-09 36.2 0.8 0.056 13.6 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 CQR55778.1 - 6.5e-08 32.1 0.9 0.043 13.7 0.2 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 CQR55778.1 - 2e-07 30.7 1.9 0.047 13.9 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR55778.1 - 6.3e-06 26.4 0.0 0.11 12.8 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 CQR55778.1 - 6.4e-05 22.6 0.0 0.0024 17.5 0.0 2.9 3 0 0 3 3 3 1 TPR repeat TPR_MalT PF17874.1 CQR55778.1 - 0.0015 18.0 0.0 0.036 13.5 0.0 1.9 1 1 1 2 2 2 1 MalT-like TPR region MAS20 PF02064.15 CQR55778.1 - 0.0079 16.3 0.0 5.8 7.0 0.0 3.0 2 1 1 3 3 3 1 MAS20 protein import receptor TPR_16 PF13432.6 CQR55778.1 - 0.013 16.1 0.0 3.1 8.5 0.0 2.3 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 CQR55778.1 - 0.13 13.2 0.1 15 6.8 0.1 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat Flavokinase PF01687.17 CQR55780.1 - 0.015 15.6 0.1 0.095 13.0 0.0 2.4 2 1 0 2 2 2 0 Riboflavin kinase HEAT_2 PF13646.6 CQR55780.1 - 0.023 15.1 0.0 0.065 13.6 0.0 1.7 1 0 0 1 1 1 0 HEAT repeats SMI1_KNR4 PF09346.10 CQR55782.1 - 3.9e-07 30.5 1.4 7.6e-07 29.6 1.4 1.4 1 1 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) SUKH_6 PF14568.6 CQR55782.1 - 1.4e-06 28.7 0.9 3.2e-06 27.5 0.7 1.7 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_5 PF14567.6 CQR55782.1 - 4.9e-06 26.3 0.1 6.2e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH-4 PF14435.6 CQR55783.1 - 2.9e-14 53.5 0.0 3.3e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 SUKH-4 immunity protein SUKH_6 PF14568.6 CQR55783.1 - 0.027 14.9 1.1 0.027 14.9 1.1 1.9 2 1 0 2 2 2 0 SMI1-KNR4 cell-wall NAGPA PF09992.9 CQR55785.1 - 1.5e-42 145.7 1.2 2.3e-42 145.1 1.2 1.3 1 0 0 1 1 1 1 Phosphodiester glycosidase DUF3810 PF12725.7 CQR55785.1 - 0.11 11.8 0.1 0.16 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) HTH_1 PF00126.27 CQR55786.1 - 5.4e-18 64.7 0.0 1.1e-17 63.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 CQR55786.1 - 2e-11 43.7 0.0 2.8e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain MarR_2 PF12802.7 CQR55786.1 - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.6 CQR55786.1 - 0.012 15.4 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR PF01047.22 CQR55786.1 - 0.085 12.8 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 MarR family Meth_synt_2 PF01717.18 CQR55787.1 - 2e-13 50.3 0.0 3.7e-13 49.5 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DUF536 PF04394.14 CQR55787.1 - 0.14 12.0 0.4 0.4 10.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF536 GFO_IDH_MocA PF01408.22 CQR55788.1 - 4.4e-18 66.2 0.2 7.3e-18 65.5 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55788.1 - 6e-09 35.9 0.0 1.6e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR55788.1 - 0.0073 16.9 0.5 0.013 16.1 0.5 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain HTH_18 PF12833.7 CQR55789.1 - 1.7e-17 63.5 0.4 3.3e-17 62.5 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55789.1 - 1.6e-15 56.7 0.0 1.7e-08 34.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55789.1 - 4.6e-09 36.3 0.7 8.3e-08 32.2 0.1 2.3 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR55789.1 - 3.4e-07 29.9 0.2 5.4e-07 29.2 0.2 1.3 1 0 0 1 1 1 1 Cupin domain Ectoine_synth PF06339.12 CQR55789.1 - 0.022 14.9 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 Ectoine synthase HTH_23 PF13384.6 CQR55789.1 - 0.044 13.6 0.1 0.93 9.4 0.0 2.7 3 0 0 3 3 3 0 Homeodomain-like domain DprA_WH PF17782.1 CQR55789.1 - 0.07 13.2 0.0 13 5.9 0.0 2.5 2 0 0 2 2 2 0 DprA winged helix domain DUF2316 PF10078.9 CQR55789.1 - 0.083 13.1 0.1 0.5 10.6 0.1 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Couple_hipA PF13657.6 CQR55789.1 - 0.083 13.5 0.0 0.17 12.6 0.0 1.5 1 0 0 1 1 1 0 HipA N-terminal domain SgrR_N PF12793.7 CQR55789.1 - 0.11 12.7 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_Tnp_ISL3 PF13542.6 CQR55789.1 - 0.13 11.6 0.0 0.36 10.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Rrf2 PF02082.20 CQR55789.1 - 0.14 12.5 0.2 2.1 8.7 0.0 2.3 2 1 0 2 2 2 0 Transcriptional regulator GFO_IDH_MocA PF01408.22 CQR55790.1 - 2e-29 102.8 0.2 3.4e-29 102.1 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55790.1 - 5.6e-07 29.6 0.0 1.9e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Sacchrp_dh_NADP PF03435.18 CQR55790.1 - 0.00026 21.2 0.1 0.00052 20.3 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 CQR55790.1 - 0.00029 21.5 0.2 0.00091 19.9 0.3 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain NMT1_2 PF13379.6 CQR55790.1 - 0.026 14.2 0.1 0.22 11.2 0.1 2.5 3 1 0 3 3 3 0 NMT1-like family Corona_NS2A PF05213.12 CQR55790.1 - 0.05 12.9 0.0 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NS2A protein EF-hand_7 PF13499.6 CQR55790.1 - 0.18 12.3 0.0 0.4 11.2 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair tRNA-synt_1f PF01921.18 CQR55792.1 - 1.9e-113 379.1 0.0 2.5e-113 378.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 CQR55792.1 - 1.3e-05 24.8 0.0 0.0098 15.3 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 CQR55792.1 - 0.0012 17.7 0.4 1 8.0 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 CQR55792.1 - 0.2 9.9 0.0 7.6 4.6 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) Transcrip_reg PF01709.20 CQR55793.1 - 1e-81 274.0 0.4 1.1e-81 273.8 0.4 1.0 1 0 0 1 1 1 1 Transcriptional regulator SAM_LFY PF01698.16 CQR55793.1 - 0.13 12.2 0.1 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Floricaula / Leafy protein SAM domain DUF2951 PF11166.8 CQR55794.1 - 1 9.6 5.5 1.2 9.4 5.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) NUDIX PF00293.28 CQR55795.1 - 3.6e-19 69.1 0.0 4.7e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 CQR55795.1 - 3.9e-06 26.8 0.0 5.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Amidase PF01425.21 CQR55796.1 - 2.9e-26 92.4 0.0 1.3e-24 87.0 0.0 2.0 1 1 0 1 1 1 1 Amidase Amidase PF01425.21 CQR55797.1 - 1.1e-28 100.4 0.0 1.3e-28 100.2 0.0 1.0 1 0 0 1 1 1 1 Amidase Integrase_Zn PF02022.19 CQR55797.1 - 0.017 15.1 0.1 0.036 14.0 0.1 1.5 1 0 0 1 1 1 0 Integrase Zinc binding domain TauE PF01925.19 CQR55798.1 - 1.5e-40 139.3 37.0 2.1e-40 138.9 37.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Acetyltransf_10 PF13673.7 CQR55799.1 - 5.7e-15 55.4 0.2 6.4e-15 55.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55799.1 - 3.2e-12 46.7 0.1 3.9e-12 46.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55799.1 - 5.3e-08 33.2 0.1 7.3e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR55799.1 - 1.3e-06 28.5 0.1 4.2e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 CQR55799.1 - 0.0004 20.1 0.0 0.00047 19.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 CQR55799.1 - 0.0012 19.0 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 CQR55799.1 - 0.032 14.2 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_6 PF13480.7 CQR55799.1 - 0.053 13.7 0.1 0.064 13.4 0.1 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain tRNA_SAD PF07973.14 CQR55800.1 - 9.2e-11 41.7 0.9 1.8e-10 40.8 0.9 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 CQR55800.1 - 2.5e-09 37.7 0.1 5.3e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2c PF01411.19 CQR55800.1 - 5.6e-08 31.8 0.0 7.7e-08 31.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) JAKMIP_CC3 PF16034.5 CQR55800.1 - 0.06 13.3 0.6 0.12 12.3 0.6 1.4 1 0 0 1 1 1 0 JAKMIP CC3 domain DDE_Tnp_1 PF01609.21 CQR55801.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR55801.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR55801.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR55801.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain DUF4105 PF13387.6 CQR55802.1 - 0.023 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) Acetyltransf_1 PF00583.25 CQR55803.1 - 2.3e-07 31.1 0.1 3.2e-07 30.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55803.1 - 3.7e-05 24.1 0.0 6.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR55803.1 - 0.0089 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR55803.1 - 0.066 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Cu_amine_oxidN1 PF07833.11 CQR55804.1 - 2.7e-14 53.4 0.1 7.1e-14 52.1 0.1 1.8 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain KAP_NTPase PF07693.14 CQR55805.1 - 4.3e-36 124.8 4.7 2.9e-35 122.1 4.7 2.4 1 1 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.6 CQR55805.1 - 0.00031 21.1 0.0 0.00073 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR55805.1 - 0.00075 19.8 0.0 0.0087 16.3 0.0 2.7 2 2 0 2 2 2 1 AAA domain AAA PF00004.29 CQR55805.1 - 0.0049 17.3 0.3 0.14 12.6 0.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 CQR55805.1 - 0.053 13.0 0.1 0.54 9.8 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region GTP_EFTU PF00009.27 CQR55806.1 - 1.7e-50 171.3 0.0 3e-50 170.5 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 CQR55806.1 - 6.8e-20 71.1 0.0 3.3e-19 68.9 0.0 2.2 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 CQR55806.1 - 5.6e-17 61.6 0.0 5e-16 58.5 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.6 CQR55806.1 - 6.8e-07 29.3 0.0 1.3e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 CQR55806.1 - 0.00042 20.4 0.0 0.00072 19.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RE_SinI PF09570.10 CQR55806.1 - 0.024 13.9 0.0 0.043 13.0 0.0 1.4 1 0 0 1 1 1 0 SinI restriction endonuclease APOBEC4_like PF18774.1 CQR55806.1 - 0.065 13.2 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 APOBEC4-like -AID/APOBEC-deaminase GTP_EFTU_D2 PF03144.25 CQR55806.1 - 0.14 12.6 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu domain 2 NUDIX PF00293.28 CQR55807.1 - 2.3e-10 40.6 0.0 2.8e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain POB3_N PF17292.2 CQR55807.1 - 0.016 15.6 0.0 0.53 10.8 0.0 2.1 2 0 0 2 2 2 0 POB3-like N-terminal PH domain DMT_YdcZ PF04657.13 CQR55808.1 - 1.7e-31 109.4 17.0 1.9e-31 109.2 17.0 1.0 1 0 0 1 1 1 1 Putative inner membrane exporter, YdcZ EamA PF00892.20 CQR55808.1 - 9.7e-05 22.6 13.9 0.00013 22.1 13.9 1.3 1 0 0 1 1 1 1 EamA-like transporter family 7TMR-DISM_7TM PF07695.11 CQR55808.1 - 0.025 14.5 9.2 0.028 14.3 9.2 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF983 PF06170.12 CQR55808.1 - 0.37 11.2 4.3 1.9 9.0 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF983) cNMP_binding PF00027.29 CQR55809.1 - 1.1e-13 51.0 0.0 1.9e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR55809.1 - 5e-11 42.4 0.0 7.9e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 CQR55809.1 - 0.041 14.2 0.0 0.093 13.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 CQR55809.1 - 0.078 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 MarR family SgrR_N PF12793.7 CQR55809.1 - 0.13 12.5 0.0 0.37 11.0 0.0 1.7 2 0 0 2 2 2 0 Sugar transport-related sRNA regulator N-term DMT_YdcZ PF04657.13 CQR55810.1 - 6.7e-28 97.7 18.1 7.7e-28 97.5 18.1 1.0 1 0 0 1 1 1 1 Putative inner membrane exporter, YdcZ EamA PF00892.20 CQR55810.1 - 0.00071 19.8 16.4 0.00087 19.5 16.4 1.1 1 0 0 1 1 1 1 EamA-like transporter family MgtC PF02308.16 CQR55810.1 - 0.042 14.2 7.0 0.064 13.6 7.0 1.4 1 1 0 1 1 1 0 MgtC family HPP PF04982.13 CQR55810.1 - 0.043 14.0 4.1 0.074 13.2 4.1 1.6 1 1 0 1 1 1 0 HPP family Cation_ATPase_C PF00689.21 CQR55810.1 - 1.1 8.9 8.8 0.28 10.9 4.1 1.9 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus Glycos_transf_3 PF00591.21 CQR55811.1 - 3.7e-25 89.0 0.0 5e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 CQR55811.1 - 2.6e-11 43.2 0.1 4.8e-11 42.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain ANTAR PF03861.14 CQR55812.1 - 1.1e-17 63.6 0.7 1.8e-17 62.9 0.7 1.4 1 0 0 1 1 1 1 ANTAR domain TIP39 PF14980.6 CQR55812.1 - 1.7 8.6 4.4 3.2 7.7 0.8 2.7 1 1 1 2 2 2 0 TIP39 peptide Pyr_redox_2 PF07992.14 CQR55813.1 - 1.9e-58 198.1 0.1 3.3e-58 197.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.15 CQR55813.1 - 2.6e-26 91.7 12.6 6.4e-13 48.8 0.5 2.8 2 0 0 2 2 2 2 BFD-like [2Fe-2S] binding domain NIR_SIR PF01077.22 CQR55813.1 - 1.3e-25 89.7 0.1 2.3e-25 88.9 0.1 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Rubredoxin_C PF18267.1 CQR55813.1 - 3.8e-20 71.6 0.1 4e-19 68.3 0.1 2.4 2 0 0 2 2 2 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox PF00070.27 CQR55813.1 - 4.6e-19 68.8 0.6 5.4e-17 62.1 0.1 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR55813.1 - 1.5e-13 50.7 0.0 2.4e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NIR_SIR_ferr PF03460.17 CQR55813.1 - 2.2e-12 46.6 0.0 4.9e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain AlaDh_PNT_C PF01262.21 CQR55813.1 - 7.8e-05 22.1 0.1 0.0025 17.1 0.1 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 CQR55813.1 - 0.00028 20.1 2.3 0.024 13.7 0.0 2.7 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 CQR55813.1 - 0.00036 20.9 0.0 0.029 14.8 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 CQR55813.1 - 0.00085 19.3 1.4 0.3 11.1 0.0 4.0 3 1 1 4 4 4 1 FAD-NAD(P)-binding DAO PF01266.24 CQR55813.1 - 0.0042 16.7 1.1 3.2 7.2 0.0 3.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 CQR55813.1 - 0.02 14.0 0.9 0.75 8.8 1.1 2.8 2 1 1 3 3 3 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 CQR55813.1 - 0.023 14.6 0.1 0.055 13.3 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 CQR55813.1 - 0.13 12.3 0.1 4 7.5 0.0 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Rieske PF00355.26 CQR55814.1 - 3.9e-16 58.8 0.2 4.6e-16 58.5 0.2 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 CQR55814.1 - 4.6e-15 55.4 0.0 5.4e-15 55.2 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain TP_methylase PF00590.20 CQR55815.1 - 3.2e-49 167.7 0.9 3.8e-49 167.5 0.9 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 CQR55815.1 - 0.13 12.6 0.0 0.27 11.6 0.0 1.7 1 1 0 1 1 1 0 Radical SAM superfamily Fe-S_biosyn PF01521.20 CQR55816.1 - 2.6e-13 50.2 0.0 2.8e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Response_reg PF00072.24 CQR55817.1 - 3.5e-29 101.2 0.5 5.8e-29 100.5 0.5 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55817.1 - 2.2e-27 94.9 0.0 5.2e-27 93.7 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 CQR55817.1 - 0.03 13.9 0.1 12 5.5 0.1 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF2000 PF09391.10 CQR55817.1 - 0.14 12.1 0.1 3.6 7.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2000) HATPase_c PF02518.26 CQR55818.1 - 1.6e-15 57.6 0.0 2.9e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55818.1 - 4.7e-12 45.8 2.8 8.3e-12 45.0 0.1 2.7 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 CQR55818.1 - 3.7e-05 23.6 0.0 6.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HAMP PF00672.25 CQR55818.1 - 0.00012 22.3 0.0 0.00037 20.8 0.0 1.8 1 0 0 1 1 1 1 HAMP domain U6-snRNA_bdg PF10596.9 CQR55818.1 - 0.038 13.9 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 U6-snRNA interacting domain of PrP8 VanY PF02557.17 CQR55819.1 - 1.5e-28 99.3 0.2 7.6e-28 97.0 0.1 2.1 2 1 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase VanZ PF04892.12 CQR55820.1 - 5.4e-23 82.0 4.7 7.3e-23 81.6 4.7 1.1 1 0 0 1 1 1 1 VanZ like family adh_short_C2 PF13561.6 CQR55821.1 - 9.8e-63 211.8 7.5 1.1e-62 211.7 7.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR55821.1 - 7.1e-55 185.5 8.1 8.8e-55 185.2 8.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR55821.1 - 2.3e-10 40.7 2.4 3.6e-10 40.1 2.4 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 CQR55821.1 - 0.00057 19.8 1.6 0.00092 19.1 1.6 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF881 PF05949.12 CQR55821.1 - 0.032 14.1 1.9 0.055 13.3 1.9 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) Epimerase PF01370.21 CQR55821.1 - 0.18 11.2 1.6 0.28 10.6 1.6 1.5 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family FGGY_N PF00370.21 CQR55822.1 - 9.4e-23 81.0 0.0 1.7e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 CQR55822.1 - 2.6e-06 27.3 0.1 3.9e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Raco_middle PF17651.1 CQR55822.1 - 0.0038 16.9 0.1 0.0063 16.2 0.1 1.3 1 0 0 1 1 1 1 RACo middle region BcrAD_BadFG PF01869.20 CQR55822.1 - 0.057 12.9 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Lsm_interact PF05391.11 CQR55823.1 - 0.72 9.4 2.0 1.9 8.1 2.0 1.7 1 0 0 1 1 1 0 Lsm interaction motif Glyco_hydro_2_C PF02836.17 CQR55824.1 - 6.3e-116 386.7 0.2 8.6e-116 386.3 0.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.17 CQR55824.1 - 2.2e-75 253.4 0.0 3.7e-75 252.7 0.0 1.4 1 0 0 1 1 1 1 Beta galactosidase small chain Glyco_hydro_2_N PF02837.18 CQR55824.1 - 5.1e-46 156.7 0.8 1.1e-43 149.1 2.4 2.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain DUF4981 PF16353.5 CQR55824.1 - 2.2e-22 79.3 0.4 2.6e-21 75.9 0.1 2.7 3 0 0 3 3 3 1 Domain of unknown function(DUF4981) Glyco_hydro_2 PF00703.21 CQR55824.1 - 3.9e-18 66.1 0.0 1.4e-17 64.4 0.0 2.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 AraC_binding PF02311.19 CQR55825.1 - 4.1e-20 72.1 0.2 8.5e-20 71.1 0.2 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_18 PF12833.7 CQR55825.1 - 2.2e-18 66.3 0.1 4.4e-18 65.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55825.1 - 2.6e-13 49.7 0.0 1.7e-05 24.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR55825.1 - 2.2e-05 24.1 0.0 3.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AAA_33 PF13671.6 CQR55827.1 - 1.3e-08 35.2 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 CQR55827.1 - 0.00016 21.5 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.29 CQR55827.1 - 0.0003 21.2 0.0 0.00048 20.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 CQR55827.1 - 0.00031 20.3 0.0 0.00059 19.4 0.0 1.5 1 1 0 1 1 1 1 PhoH-like protein AAA_18 PF13238.6 CQR55827.1 - 0.0023 18.5 0.0 0.0033 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 CQR55827.1 - 0.0034 17.9 0.0 0.0048 17.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SKI PF01202.22 CQR55827.1 - 0.0093 16.1 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate kinase AAA_16 PF13191.6 CQR55827.1 - 0.012 16.0 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 CQR55827.1 - 0.015 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 CQR55827.1 - 0.016 15.5 0.0 0.024 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 CQR55827.1 - 0.017 14.3 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 CQR55827.1 - 0.018 14.7 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR55827.1 - 0.019 14.8 0.0 0.047 13.6 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase IstB_IS21 PF01695.17 CQR55827.1 - 0.022 14.5 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 CQR55827.1 - 0.025 14.8 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR55827.1 - 0.027 14.2 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 CQR55827.1 - 0.032 14.2 0.1 0.088 12.8 0.0 1.8 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 CQR55827.1 - 0.047 13.5 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RuvB_N PF05496.12 CQR55827.1 - 0.072 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PduV-EutP PF10662.9 CQR55827.1 - 0.098 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 CQR55827.1 - 0.14 11.9 0.3 0.83 9.4 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain APS_kinase PF01583.20 CQR55827.1 - 0.19 11.6 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_23 PF13476.6 CQR55827.1 - 0.3 11.6 0.0 0.43 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Acetyltransf_1 PF00583.25 CQR55830.1 - 5.1e-13 49.3 0.1 6.4e-13 49.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55830.1 - 1.2e-11 44.8 0.0 1.9e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR55830.1 - 7.5e-09 35.6 0.0 1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR55830.1 - 1.9e-06 28.6 0.0 2.2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR55830.1 - 0.00074 19.6 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 CQR55830.1 - 0.0054 16.9 0.0 0.0063 16.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 CQR55830.1 - 0.0057 16.1 0.1 0.018 14.5 0.1 1.7 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_13 PF13880.6 CQR55830.1 - 0.16 11.9 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase YARHG PF13308.6 CQR55831.1 - 2.3e-21 75.5 0.7 3.9e-21 74.7 0.7 1.4 1 0 0 1 1 1 1 YARHG domain TetR_C_28 PF17937.1 CQR55832.1 - 1e-29 102.8 0.1 2e-29 101.9 0.1 1.5 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR55832.1 - 1.3e-12 47.3 0.0 2.5e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Multi_Drug_Res PF00893.19 CQR55833.1 - 1.6e-27 96.0 10.2 2.2e-27 95.6 10.2 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 CQR55833.1 - 5.8e-08 33.0 13.0 7.2e-08 32.7 13.0 1.2 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 CQR55833.1 - 3.9e-05 23.7 6.1 5.1e-05 23.3 6.1 1.2 1 0 0 1 1 1 1 Putative transmembrane family 234 Mg_trans_NIPA PF05653.14 CQR55833.1 - 0.0043 16.2 1.2 0.0043 16.2 1.2 1.8 1 1 1 2 2 2 1 Magnesium transporter NIPA CRT-like PF08627.10 CQR55833.1 - 0.042 12.8 4.8 0.021 13.8 2.8 1.5 1 1 0 1 1 1 0 CRT-like, chloroquine-resistance transporter-like Bax1-I PF01027.20 CQR55833.1 - 0.09 12.6 9.8 0.1 12.4 9.8 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 TPT PF03151.16 CQR55833.1 - 0.1 12.0 10.2 0.13 11.6 10.2 1.3 1 1 0 1 1 1 0 Triose-phosphate Transporter family FUSC_2 PF13515.6 CQR55833.1 - 0.46 10.6 9.0 1 9.5 8.8 1.7 1 1 0 1 1 1 0 Fusaric acid resistance protein-like FMN_red PF03358.15 CQR55834.1 - 1.6e-29 102.7 0.0 2.3e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 CQR55834.1 - 0.036 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold CARDB PF07705.11 CQR55835.1 - 1.9e-30 105.1 22.4 2e-24 85.8 2.9 4.7 4 0 0 4 4 4 2 CARDB F5_F8_type_C PF00754.25 CQR55835.1 - 1e-29 103.2 11.3 7.8e-19 68.1 2.7 3.0 2 0 0 2 2 2 2 F5/8 type C domain Beta_helix PF13229.6 CQR55835.1 - 2.8e-05 24.0 61.0 0.00074 19.4 15.9 4.8 2 2 1 3 3 3 2 Right handed beta helix region DUF5000 PF16391.5 CQR55835.1 - 0.00079 19.6 0.1 6 7.0 0.0 3.9 4 0 0 4 4 4 1 Domain of unknown function FlgD_ig PF13860.6 CQR55835.1 - 0.0071 16.2 3.3 0.04 13.8 1.9 2.9 2 0 0 2 2 2 1 FlgD Ig-like domain Filamin PF00630.19 CQR55835.1 - 0.12 13.2 0.2 1.3 9.8 0.0 2.8 2 1 1 3 3 3 0 Filamin/ABP280 repeat GerA PF03323.13 CQR55837.1 - 4.5e-174 579.3 2.1 5.3e-174 579.1 2.1 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein DUF1513 PF07433.11 CQR55837.1 - 0.077 12.1 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1513) Spore_permease PF03845.13 CQR55838.1 - 2e-90 302.9 33.2 2.6e-90 302.5 33.2 1.1 1 0 0 1 1 1 1 Spore germination protein Spore_GerAC PF05504.11 CQR55839.1 - 1.8e-30 106.3 1.5 1.8e-30 106.3 1.5 1.4 2 0 0 2 2 2 1 Spore germination B3/ GerAC like, C-terminal Flp1_like PF16982.5 CQR55839.1 - 0.12 11.8 0.2 0.3 10.5 0.2 1.6 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain BtrH_N PF14399.6 CQR55840.1 - 0.00038 20.7 0.0 0.00065 20.0 0.0 1.4 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal DUF4872 PF16169.5 CQR55840.1 - 0.046 13.5 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4872) HTH_18 PF12833.7 CQR55841.1 - 8.3e-18 64.4 0.2 1.7e-17 63.5 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55841.1 - 2.2e-15 56.3 2.4 3.5e-07 30.2 0.7 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55841.1 - 1.5e-08 34.6 0.8 3e-08 33.6 0.1 1.8 2 1 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR55841.1 - 8.1e-07 28.7 0.1 1.3e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain ARD PF03079.14 CQR55841.1 - 7.2e-05 23.0 0.0 0.00016 21.9 0.0 1.5 1 0 0 1 1 1 1 ARD/ARD' family Cupin_3 PF05899.12 CQR55841.1 - 0.0014 18.3 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 CQR55841.1 - 0.0023 17.5 0.1 0.0041 16.7 0.1 1.3 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 CQR55841.1 - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Cupin PP-binding PF00550.25 CQR55842.1 - 8.1e-08 32.5 2.9 1.2e-07 32.0 2.9 1.3 1 1 0 1 1 1 1 Phosphopantetheine attachment site PGM1_C PF18105.1 CQR55843.1 - 4.4e-06 26.1 0.5 1.3e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 PGM1 C-terminal domain DUF3182 PF11379.8 CQR55843.1 - 0.031 13.2 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) ATP-grasp PF02222.22 CQR55843.1 - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Glyco_tran_28_C PF04101.16 CQR55844.1 - 0.027 14.4 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Radical_SAM PF04055.21 CQR55845.1 - 7.2e-14 52.5 0.7 1.9e-13 51.1 0.7 1.8 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 CQR55845.1 - 1.3e-13 51.2 0.1 3.9e-13 49.7 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 CQR55845.1 - 2.2e-09 37.5 0.2 4.9e-09 36.3 0.2 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 CQR55845.1 - 3.5e-09 37.1 0.2 2.3e-08 34.4 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain GFO_IDH_MocA PF01408.22 CQR55846.1 - 1.4e-17 64.7 0.5 6.7e-17 62.4 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.20 CQR55846.1 - 0.02 15.0 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA_C PF02894.17 CQR55846.1 - 0.023 14.7 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain MR_MLE_C PF13378.6 CQR55846.1 - 0.055 13.0 0.1 7.6 6.0 0.0 2.7 3 0 0 3 3 3 0 Enolase C-terminal domain-like NTP_transf_2 PF01909.23 CQR55847.1 - 1.8e-05 24.9 0.0 3.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 CQR55847.1 - 2e-05 24.6 0.0 3.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF4037 PF13228.6 CQR55847.1 - 0.052 14.3 0.0 0.21 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4037) UDPGT PF00201.18 CQR55848.1 - 1.7e-19 70.0 0.0 2.2e-15 56.5 0.0 2.2 2 0 0 2 2 2 2 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_tran_28_C PF04101.16 CQR55848.1 - 1e-07 32.1 0.0 1.8e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 CQR55848.1 - 0.018 15.1 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Cellulase PF00150.18 CQR55849.1 - 2.1e-62 211.1 2.0 3.2e-62 210.5 2.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) CBM_3 PF00942.18 CQR55849.1 - 7.2e-16 58.4 0.0 1.8e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Cellulose binding domain MCPsignal PF00015.21 CQR55850.1 - 3.2e-26 92.2 19.4 5.7e-25 88.1 10.8 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin_2 PF14523.6 CQR55850.1 - 0.00024 21.4 5.8 0.001 19.4 0.3 2.2 1 1 1 2 2 2 1 Syntaxin-like protein EzrA PF06160.12 CQR55850.1 - 0.0015 16.8 7.8 0.0071 14.6 2.5 2.1 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA dCache_3 PF14827.6 CQR55850.1 - 0.0032 17.1 2.2 0.0078 15.9 0.1 2.1 2 0 0 2 2 2 1 Double sensory domain of two-component sensor kinase dCache_1 PF02743.18 CQR55850.1 - 0.0037 17.1 0.1 0.0037 17.1 0.1 3.1 2 1 1 3 3 3 1 Cache domain Syntaxin-6_N PF09177.11 CQR55850.1 - 0.0059 17.1 5.7 0.55 10.8 0.5 2.3 2 0 0 2 2 2 2 Syntaxin 6, N-terminal Fib_alpha PF08702.10 CQR55850.1 - 0.0087 16.2 8.7 0.11 12.7 1.0 2.2 2 0 0 2 2 2 1 Fibrinogen alpha/beta chain family Myosin_tail_1 PF01576.19 CQR55850.1 - 0.01 13.7 8.2 0.015 13.1 8.2 1.1 1 0 0 1 1 1 0 Myosin tail APG17 PF04108.12 CQR55850.1 - 0.013 14.7 10.3 0.028 13.6 2.0 2.3 1 1 0 2 2 2 0 Autophagy protein Apg17 T2SSF PF00482.23 CQR55850.1 - 0.014 15.3 2.2 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F COG2 PF06148.11 CQR55850.1 - 0.019 15.0 9.7 0.65 10.1 1.9 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Tektin PF03148.14 CQR55850.1 - 0.024 13.4 5.3 0.069 11.9 0.3 2.1 2 0 0 2 2 2 0 Tektin family I_LWEQ PF01608.17 CQR55850.1 - 0.027 14.7 0.8 0.027 14.7 0.8 2.2 2 0 0 2 2 2 0 I/LWEQ domain DUF948 PF06103.11 CQR55850.1 - 0.032 14.5 12.2 0.85 9.9 3.3 3.2 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) sCache_3_3 PF17202.4 CQR55850.1 - 0.038 14.4 0.2 0.17 12.3 0.0 2.2 2 1 0 2 2 2 0 Single cache domain 3 DUF1664 PF07889.12 CQR55850.1 - 0.038 14.0 11.1 0.57 10.2 2.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF745 PF05335.13 CQR55850.1 - 0.039 13.7 11.4 0.98 9.1 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF745) Prefoldin_2 PF01920.20 CQR55850.1 - 0.042 13.8 4.5 2.5 8.1 1.8 2.7 2 1 0 2 2 2 0 Prefoldin subunit GAT PF03127.14 CQR55850.1 - 0.054 13.8 2.7 1.2 9.4 0.2 2.5 2 0 0 2 2 2 0 GAT domain WXG100 PF06013.12 CQR55850.1 - 0.054 13.7 7.8 1.2 9.4 0.6 2.8 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF848 PF05852.11 CQR55850.1 - 0.063 13.4 3.9 0.095 12.8 0.3 2.1 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) V-SNARE PF05008.15 CQR55850.1 - 0.072 13.5 1.2 0.072 13.5 1.2 2.1 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Imm7 PF15585.6 CQR55850.1 - 0.096 13.0 2.0 1.1 9.6 0.2 2.3 2 0 0 2 2 2 0 Immunity protein 7 ADIP PF11559.8 CQR55850.1 - 0.096 12.8 11.5 0.075 13.1 2.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Med9 PF07544.13 CQR55850.1 - 0.1 12.7 4.8 0.32 11.1 0.3 2.9 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Vps5 PF09325.10 CQR55850.1 - 0.12 11.9 8.0 0.95 9.0 0.4 2.1 2 0 0 2 2 2 0 Vps5 C terminal like Ntox28 PF15605.6 CQR55850.1 - 0.15 12.3 2.4 0.21 11.8 0.3 2.0 2 0 0 2 2 2 0 Bacterial toxin 28 COG5 PF10392.9 CQR55850.1 - 0.16 12.2 4.3 5.3 7.2 0.3 2.4 2 1 0 2 2 2 0 Golgi transport complex subunit 5 DUF4665 PF15679.5 CQR55850.1 - 0.16 12.6 6.0 0.49 11.0 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4665) DUF4763 PF15960.5 CQR55850.1 - 0.16 11.2 2.6 3.4 6.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) Sec20 PF03908.13 CQR55850.1 - 0.24 11.3 13.0 1 9.3 3.6 2.3 2 0 0 2 2 2 0 Sec20 Phage_GP20 PF06810.11 CQR55850.1 - 0.24 11.2 5.3 0.18 11.6 0.4 2.2 2 0 0 2 2 2 0 Phage minor structural protein GP20 Sec34 PF04136.15 CQR55850.1 - 0.26 11.1 8.7 0.58 10.0 1.5 2.2 2 0 0 2 2 2 0 Sec34-like family EMP24_GP25L PF01105.24 CQR55850.1 - 0.31 10.9 8.4 0.91 9.4 1.2 2.5 1 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF3540 PF12059.8 CQR55850.1 - 0.36 10.6 8.2 0.34 10.7 1.2 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3540) SKA2 PF16740.5 CQR55850.1 - 0.4 10.5 5.0 1.1 9.1 0.3 2.3 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Baculo_PEP_C PF04513.12 CQR55850.1 - 0.43 10.6 11.9 1.7 8.7 1.1 2.4 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 CQR55850.1 - 0.5 10.7 11.1 2.1 8.7 1.1 2.9 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 CQR55850.1 - 0.58 10.4 9.7 0.58 10.4 2.5 2.4 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.8 CQR55850.1 - 0.58 9.4 12.9 0.12 11.7 2.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) ABC_tran_CTD PF16326.5 CQR55850.1 - 0.6 10.4 9.6 1.2 9.5 1.0 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain Prefoldin PF02996.17 CQR55850.1 - 0.63 10.0 8.7 0.37 10.7 1.1 2.8 2 2 0 2 2 2 0 Prefoldin subunit MIP-T3_C PF17749.1 CQR55850.1 - 0.96 9.4 11.1 1.7 8.6 2.1 2.5 2 1 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region LOH1CR12 PF10158.9 CQR55850.1 - 1.1 9.3 4.4 0.83 9.7 0.9 2.2 2 0 0 2 2 2 0 Tumour suppressor protein Laminin_II PF06009.12 CQR55850.1 - 1.2 9.2 11.8 1 9.4 2.3 2.3 2 0 0 2 2 2 0 Laminin Domain II LXG PF04740.12 CQR55850.1 - 1.3 8.7 11.1 3.9 7.1 2.8 2.3 2 0 0 2 2 2 0 LXG domain of WXG superfamily SKA1 PF07160.12 CQR55850.1 - 1.3 8.8 8.3 0.88 9.4 1.5 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Vps53_N PF04100.12 CQR55850.1 - 1.4 7.8 8.5 0.91 8.4 1.6 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal Tweety PF04906.13 CQR55850.1 - 1.5 7.4 4.2 5.8 5.5 0.5 2.0 2 0 0 2 2 2 0 Tweety DUF812 PF05667.11 CQR55850.1 - 1.5 7.6 16.0 51 2.6 15.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF812) KELK PF15796.5 CQR55850.1 - 2.3 8.7 6.1 6.7 7.2 0.2 2.6 2 1 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DASH_Duo1 PF08651.10 CQR55850.1 - 3.5 7.5 8.3 1.8 8.4 0.8 2.9 2 2 0 2 2 2 0 DASH complex subunit Duo1 FlaC_arch PF05377.11 CQR55850.1 - 3.9 7.9 10.4 4.2 7.8 1.3 3.2 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) YabA PF06156.13 CQR55850.1 - 4.1 8.1 7.4 13 6.4 0.6 2.4 2 0 0 2 2 2 0 Initiation control protein YabA Spc7 PF08317.11 CQR55850.1 - 6.5 5.5 13.9 69 2.2 11.4 2.1 1 1 0 1 1 1 0 Spc7 kinetochore protein TMF_TATA_bd PF12325.8 CQR55850.1 - 6.5 7.0 13.1 7.1 6.9 2.1 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding PRKG1_interact PF15898.5 CQR55850.1 - 7.2 7.6 8.0 5.5 8.0 1.0 2.2 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain DUF5601 PF18151.1 CQR55850.1 - 7.6 6.9 8.0 13 6.2 1.3 3.1 2 2 0 2 2 2 0 Domain of unknown function (DUF5601) TMPIT PF07851.13 CQR55850.1 - 8.5 5.5 10.7 2.2 7.4 1.8 2.1 1 1 1 2 2 2 0 TMPIT-like protein PDDEXK_6 PF04720.12 CQR55850.1 - 8.6 6.2 8.0 1.2 9.1 0.8 2.0 1 1 0 2 2 2 0 PDDEXK-like family of unknown function DUF4404 PF14357.6 CQR55850.1 - 9.2 7.0 7.9 2.3 8.9 0.9 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) YkyA PF10368.9 CQR55850.1 - 9.5 5.8 13.0 2 8.0 3.5 2.2 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein RNase_J_C PF17770.1 CQR55851.1 - 1.3e-25 90.3 0.2 2.1e-25 89.5 0.2 1.4 1 0 0 1 1 1 1 Ribonuclease J C-terminal domain Lactamase_B PF00753.27 CQR55851.1 - 4.4e-15 56.2 0.2 9.3e-15 55.2 0.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR55851.1 - 1.2e-13 51.1 0.2 3e-13 49.8 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 CQR55851.1 - 9e-12 44.7 0.4 2.2e-10 40.3 0.2 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 CQR55851.1 - 0.022 14.7 0.1 0.08 12.8 0.0 2.0 2 0 0 2 2 2 0 Beta-lactamase superfamily domain Alpha-amylase PF00128.24 CQR55852.1 - 3.6e-122 408.1 1.3 4.9e-122 407.7 1.3 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 CQR55852.1 - 1.5e-05 25.0 0.0 7.6e-05 22.7 0.0 2.2 3 0 0 3 3 3 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 CQR55852.1 - 1.7e-05 24.1 0.0 2.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain DUF3459 PF11941.8 CQR55852.1 - 0.00046 20.4 0.0 0.0045 17.3 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF3459) PTS_EIIA_1 PF00358.20 CQR55853.1 - 1e-46 157.8 0.1 1.7e-46 157.1 0.1 1.4 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIC PF02378.18 CQR55853.1 - 3.1e-46 157.9 29.5 3.1e-46 157.9 29.5 2.0 1 1 1 2 2 2 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR55853.1 - 6.2e-16 57.6 0.0 1.1e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl_2 PF13533.6 CQR55853.1 - 0.0027 17.5 0.1 0.017 15.0 0.0 2.3 2 0 0 2 2 2 1 Biotin-lipoyl like YvrJ PF12841.7 CQR55853.1 - 0.0052 16.3 0.2 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 YvrJ protein family Peptidase_M23 PF01551.22 CQR55853.1 - 0.082 13.1 0.2 0.2 11.9 0.2 1.6 1 0 0 1 1 1 0 Peptidase family M23 UTRA PF07702.13 CQR55854.1 - 1.9e-31 108.8 1.9 1.9e-31 108.8 1.1 1.4 2 0 0 2 2 2 1 UTRA domain GntR PF00392.21 CQR55854.1 - 8.3e-18 63.8 0.0 2.7e-17 62.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 CQR55854.1 - 1.2e-05 25.2 0.2 0.01 15.8 0.1 2.5 2 0 0 2 2 2 2 HTH domain Rrf2 PF02082.20 CQR55854.1 - 2.6e-05 24.5 0.1 6e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 CQR55854.1 - 3e-05 23.7 0.1 0.00071 19.3 0.0 2.7 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 CQR55854.1 - 3.3e-05 23.8 0.0 0.00043 20.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR55854.1 - 3.7e-05 23.6 0.0 0.00012 22.0 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 CQR55854.1 - 0.0055 16.9 0.5 0.015 15.5 0.2 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 CQR55854.1 - 0.008 15.9 0.0 2.1 8.3 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 CQR55854.1 - 0.0087 15.6 0.1 1.8 8.2 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_41 PF14502.6 CQR55854.1 - 0.0098 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PRTase_1 PF11202.8 CQR55854.1 - 0.046 13.0 0.1 0.21 10.8 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl transferase (PRTase) TrmB PF01978.19 CQR55854.1 - 0.06 13.2 0.0 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 CQR55854.1 - 0.12 12.3 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_20 PF12840.7 CQR55854.1 - 0.14 12.2 0.0 0.79 9.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain ABC_tran PF00005.27 CQR55855.1 - 3.6e-41 140.9 5.6 4.4e-23 82.3 0.1 3.7 3 2 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 CQR55855.1 - 1.3e-11 44.9 14.0 2.2e-06 27.7 0.2 3.9 3 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR55855.1 - 7.2e-07 28.9 6.2 0.00074 19.0 0.1 3.5 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR55855.1 - 2.2e-06 27.3 0.1 0.02 14.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR55855.1 - 3.1e-06 27.8 10.8 0.014 15.9 0.1 3.3 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 CQR55855.1 - 0.00028 20.8 1.3 0.069 13.0 0.5 2.9 2 1 0 2 2 2 1 RsgA GTPase NACHT PF05729.12 CQR55855.1 - 0.0023 17.9 0.1 2.3 8.1 0.0 2.6 2 0 0 2 2 2 2 NACHT domain MMR_HSR1 PF01926.23 CQR55855.1 - 0.0024 17.9 0.1 1.7 8.7 0.0 2.9 3 0 0 3 3 3 1 50S ribosome-binding GTPase Pox_A32 PF04665.12 CQR55855.1 - 0.0028 17.1 0.5 0.12 11.9 0.1 2.6 2 0 0 2 2 2 1 Poxvirus A32 protein RNA_helicase PF00910.22 CQR55855.1 - 0.0051 17.2 1.0 5.6 7.4 0.1 3.6 3 0 0 3 3 3 1 RNA helicase AAA_7 PF12775.7 CQR55855.1 - 0.0064 16.0 0.1 4.5 6.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_16 PF13191.6 CQR55855.1 - 0.009 16.4 0.0 0.54 10.6 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 CQR55855.1 - 0.01 16.3 0.1 0.91 10.0 0.0 3.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 CQR55855.1 - 0.023 15.3 0.5 3.5 8.2 0.0 3.3 3 1 1 4 4 4 0 AAA domain NTPase_1 PF03266.15 CQR55855.1 - 0.023 14.6 0.8 5 7.0 0.1 2.9 3 0 0 3 3 3 0 NTPase Dynamin_N PF00350.23 CQR55855.1 - 0.036 14.1 0.0 0.036 14.1 0.0 3.2 4 1 0 4 4 3 0 Dynamin family TsaE PF02367.17 CQR55855.1 - 0.05 13.6 0.1 18 5.4 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 CQR55855.1 - 0.06 12.6 1.2 5.9 6.1 0.1 2.9 2 1 1 3 3 3 0 Zeta toxin DUF4024 PF13216.6 CQR55855.1 - 0.12 12.3 0.7 0.67 10.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4024) AAA_15 PF13175.6 CQR55855.1 - 0.19 11.4 23.2 0.11 12.1 3.4 4.4 2 2 0 2 2 2 0 AAA ATPase domain ABC_tran_Xtn PF12848.7 CQR55855.1 - 2.1 8.4 11.1 0.48 10.5 6.5 2.3 2 1 0 2 2 1 0 ABC transporter DAO PF01266.24 CQR55856.1 - 5.1e-54 184.2 6.0 5.7e-54 184.0 6.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR55856.1 - 4.9e-07 29.2 6.6 2.7e-06 26.7 6.6 1.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 CQR55856.1 - 3e-06 26.7 0.2 0.00091 18.5 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR55856.1 - 6.4e-06 26.3 0.2 6.4e-06 26.3 0.2 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 CQR55856.1 - 1.8e-05 24.2 0.5 0.00057 19.2 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 CQR55856.1 - 7.6e-05 22.7 0.1 0.00022 21.1 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 CQR55856.1 - 0.00016 21.3 0.1 0.0004 20.0 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 CQR55856.1 - 0.00026 21.4 0.0 0.00051 20.5 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 CQR55856.1 - 0.001 18.4 0.1 0.0025 17.1 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR55856.1 - 0.0017 17.8 0.7 0.0026 17.2 0.7 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR55856.1 - 0.0021 18.6 0.6 0.0058 17.2 0.6 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 CQR55856.1 - 0.0034 17.0 1.7 0.0053 16.3 0.6 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 CQR55856.1 - 0.006 15.7 1.9 0.024 13.7 1.3 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A IlvN PF07991.12 CQR55856.1 - 0.018 14.6 2.0 0.82 9.2 0.4 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trp_halogenase PF04820.14 CQR55856.1 - 0.019 13.8 1.3 0.7 8.7 0.7 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_2 PF03446.15 CQR55856.1 - 0.022 14.9 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 CQR55856.1 - 0.031 14.3 0.1 0.065 13.3 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.14 CQR55856.1 - 0.078 11.7 2.2 0.19 10.4 0.4 2.0 2 0 0 2 2 2 0 HI0933-like protein adh_short PF00106.25 CQR55856.1 - 0.081 12.4 0.4 0.14 11.6 0.4 1.3 1 0 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 CQR55856.1 - 0.11 11.9 0.2 0.52 9.7 0.2 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 CQR55856.1 - 0.15 11.3 2.4 0.47 9.7 0.3 2.4 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 CQR55856.1 - 0.32 11.0 3.0 3.5 7.6 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 CQR55856.1 - 0.37 10.1 2.9 0.46 9.8 1.7 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain EF-G-binding_N PF07299.11 CQR55857.1 - 1.4e-24 86.4 0.6 1.4e-24 86.4 0.6 1.7 2 0 0 2 2 2 1 Elongation factor G-binding protein, N-terminal FBP_C PF16571.5 CQR55857.1 - 5.7e-10 38.9 0.0 9.1e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 FBP C-terminal treble-clef zinc-finger GDP_Man_Dehyd PF16363.5 CQR55858.1 - 6.9e-53 180.2 0.0 1e-52 179.6 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 CQR55858.1 - 4.3e-45 154.0 0.0 5.3e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 CQR55858.1 - 1.8e-15 56.9 0.0 1.2e-14 54.2 0.0 2.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 CQR55858.1 - 1.9e-12 46.8 0.0 3.2e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 CQR55858.1 - 4.1e-11 42.5 0.0 2.2e-08 33.6 0.0 2.9 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 CQR55858.1 - 4.2e-10 39.2 0.0 1.2e-09 37.7 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain KR PF08659.10 CQR55858.1 - 3.1e-05 24.0 0.0 5.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 CQR55858.1 - 7.4e-05 22.7 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 CQR55858.1 - 0.00031 20.3 0.0 0.00096 18.7 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_7 PF13241.6 CQR55858.1 - 0.14 12.6 0.0 0.44 11.0 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding EHN PF06441.12 CQR55859.1 - 4.5e-34 117.1 0.3 7.8e-34 116.3 0.3 1.4 1 0 0 1 1 1 1 Epoxide hydrolase N terminus Abhydrolase_1 PF00561.20 CQR55859.1 - 1.3e-11 44.7 0.0 2.5e-10 40.5 0.0 2.2 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR55859.1 - 1.6e-06 28.9 0.2 4.5e-06 27.4 0.2 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family HTH_18 PF12833.7 CQR55860.1 - 4.8e-17 62.0 0.3 1e-16 61.0 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55860.1 - 3.8e-07 30.0 1.2 0.0037 17.3 0.1 3.0 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family BH3 PF15285.6 CQR55860.1 - 0.027 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Beclin-1 BH3 domain, Bcl-2-interacting TetR_N PF00440.23 CQR55861.1 - 1.2e-10 41.1 0.2 2.1e-10 40.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR55861.1 - 3.8e-05 23.8 0.1 6.3e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_8 PF14278.6 CQR55861.1 - 0.00011 22.3 0.5 0.00035 20.6 0.1 2.0 2 1 0 2 2 2 1 Transcriptional regulator C-terminal region RasGAP PF00616.19 CQR55861.1 - 0.029 14.1 0.2 0.037 13.7 0.2 1.3 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase Nitroreductase PF00881.24 CQR55862.1 - 2.4e-32 112.3 0.1 3.2e-32 111.9 0.1 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR55862.1 - 2.2e-11 43.8 2.8 0.00025 20.7 0.1 3.2 2 1 1 3 3 3 3 Putative TM nitroreductase HATPase_c PF02518.26 CQR55863.1 - 8.2e-18 65.0 0.0 1.5e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55863.1 - 4e-13 49.2 0.2 2.5e-12 46.6 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55863.1 - 4.2e-12 46.3 0.6 1e-11 45.0 0.6 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR55863.1 - 1.7e-07 31.1 0.1 1.1e-06 28.5 0.0 2.3 2 0 0 2 2 2 1 GHKL domain ECF_trnsprt PF12822.7 CQR55863.1 - 0.021 14.9 2.3 0.034 14.2 2.3 1.2 1 0 0 1 1 1 0 ECF transporter, substrate-specific component 7TMR-DISM_7TM PF07695.11 CQR55863.1 - 0.082 12.8 5.7 0.13 12.2 5.7 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Response_reg PF00072.24 CQR55864.1 - 7.8e-30 103.3 0.9 1.1e-29 102.8 0.9 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55864.1 - 1.2e-27 95.8 0.0 2.6e-27 94.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal adh_short PF00106.25 CQR55865.1 - 8.3e-25 87.4 0.2 1.7e-23 83.1 0.2 2.0 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55865.1 - 1.3e-18 67.4 0.3 9.7e-18 64.6 0.3 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55865.1 - 1.8e-07 31.3 0.1 2.6e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 KR domain F420_oxidored PF03807.17 CQR55865.1 - 0.0093 16.5 0.1 0.018 15.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 CQR55865.1 - 0.013 14.9 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family LDcluster4 PF18306.1 CQR55865.1 - 0.065 12.8 0.5 0.14 11.7 0.4 1.5 2 0 0 2 2 2 0 SLOG cluster4 family NAD_binding_10 PF13460.6 CQR55865.1 - 0.079 12.8 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding NAD_binding_7 PF13241.6 CQR55865.1 - 0.079 13.4 0.2 0.15 12.5 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_10 PF13460.6 CQR55866.1 - 1.1e-13 51.5 0.0 2.2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR55866.1 - 1.2e-07 31.5 0.0 1.9e-07 30.9 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 CQR55866.1 - 2.5e-05 23.9 0.0 4.7e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 CQR55866.1 - 0.0017 18.6 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain DUF5484 PF17583.2 CQR55866.1 - 0.012 15.2 0.6 0.37 10.5 0.6 2.3 1 1 0 1 1 1 0 Family of unknown function (DUF5484) TetR_N PF00440.23 CQR55867.1 - 2.7e-14 52.7 0.1 5.3e-14 51.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR55867.1 - 0.00011 22.4 0.3 0.00023 21.3 0.1 1.7 2 1 0 2 2 2 1 Helix-turn-helix of insertion element transposase TetR_C_14 PF17754.1 CQR55867.1 - 0.0034 17.3 0.0 0.0059 16.5 0.0 1.4 1 0 0 1 1 1 1 MftR C-terminal domain DUF5636 PF18686.1 CQR55867.1 - 0.069 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5636) AA_synth PF06684.11 CQR55867.1 - 0.15 11.6 0.1 2.4 7.7 0.0 2.0 2 0 0 2 2 2 0 Amino acid synthesis Beta_helix PF13229.6 CQR55868.1 - 1.6e-08 34.6 7.7 3e-06 27.2 7.7 2.6 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.11 CQR55868.1 - 2.3e-07 30.4 2.2 1.1e-05 24.9 0.0 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF1565) NosD PF05048.13 CQR55868.1 - 0.00024 20.4 4.9 0.0039 16.5 5.0 2.5 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Chondroitinas_B PF14592.6 CQR55868.1 - 0.0011 18.0 1.5 0.0099 14.8 0.0 2.8 3 0 0 3 3 3 1 Chondroitinase B Disaggr_assoc PF08480.10 CQR55868.1 - 0.19 11.6 4.3 0.87 9.4 1.5 2.9 3 1 0 3 3 3 0 Disaggregatase related SUFU PF05076.13 CQR55869.1 - 4.1e-43 147.3 0.2 5.6e-43 146.9 0.2 1.1 1 0 0 1 1 1 1 Suppressor of fused protein (SUFU) BB_PF PF18063.1 CQR55869.1 - 0.13 11.8 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Beta barrel Pore-forming domain cNMP_binding PF00027.29 CQR55870.1 - 4.4e-11 42.7 0.0 7e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR55870.1 - 4.7e-09 36.1 0.0 9.1e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 CQR55870.1 - 0.045 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LUD_dom PF02589.15 CQR55871.1 - 2e-53 180.9 0.0 2.4e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 LUD domain DUF1068 PF06364.12 CQR55871.1 - 5.5 6.8 6.2 3 7.7 2.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1068) Pyr_redox_2 PF07992.14 CQR55872.1 - 3.2e-58 197.3 0.3 3.2e-58 197.3 0.3 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 CQR55872.1 - 7e-32 110.0 0.2 1.7e-31 108.8 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 CQR55872.1 - 2.6e-17 63.1 9.7 3.4e-16 59.6 0.1 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR55872.1 - 1e-07 31.7 0.5 1e-07 31.7 0.5 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR55872.1 - 6.1e-06 25.6 11.0 3e-05 23.3 1.7 3.9 4 0 0 4 4 4 1 FAD binding domain GIDA PF01134.22 CQR55872.1 - 0.00012 21.3 1.0 0.00012 21.3 1.0 3.1 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 CQR55872.1 - 0.00015 21.1 8.3 0.013 14.8 1.3 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR55872.1 - 0.0023 18.1 8.7 0.005 17.0 0.4 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 CQR55872.1 - 0.0042 16.4 6.0 0.095 11.9 0.5 3.2 2 1 1 3 3 3 1 FAD binding domain HI0933_like PF03486.14 CQR55872.1 - 0.0083 14.9 3.9 0.082 11.6 0.6 2.4 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 CQR55872.1 - 0.056 12.7 8.0 3.8 6.7 0.1 3.7 3 1 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 CQR55872.1 - 0.08 12.5 1.9 0.11 12.1 0.3 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1846 PF08903.11 CQR55872.1 - 0.087 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) Lycopene_cycl PF05834.12 CQR55872.1 - 0.56 9.2 2.2 2.5 7.0 0.1 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein DAO PF01266.24 CQR55872.1 - 3.2 7.2 13.3 18 4.8 2.9 3.7 4 1 1 5 5 5 0 FAD dependent oxidoreductase Lactamase_B PF00753.27 CQR55873.1 - 1.1e-12 48.4 0.0 2e-12 47.5 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR55873.1 - 0.00061 19.4 0.0 0.00073 19.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3627 PF12299.8 CQR55873.1 - 0.041 13.9 0.0 0.094 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3627) HxlR PF01638.17 CQR55874.1 - 3.8e-26 90.8 0.9 4.8e-26 90.4 0.9 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 CQR55874.1 - 0.0086 16.0 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR55874.1 - 0.06 12.9 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 CQR55874.1 - 0.081 13.0 0.1 0.22 11.7 0.1 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Acetyltransf_3 PF13302.7 CQR55876.1 - 3.3e-29 102.3 0.0 4.5e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR55876.1 - 1.9e-09 37.8 0.0 2.5e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55876.1 - 7.1e-08 32.7 0.0 9.7e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR55876.1 - 2.1e-06 27.5 0.1 2.1e-05 24.3 0.1 2.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55876.1 - 0.0033 17.3 0.0 0.0054 16.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein SprA_N PF14349.6 CQR55876.1 - 0.053 12.4 0.0 0.073 11.9 0.0 1.1 1 0 0 1 1 1 0 Motility related/secretion protein LysR_substrate PF03466.20 CQR55877.1 - 1.3e-41 142.3 0.1 1.6e-41 142.0 0.1 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR55877.1 - 8.7e-20 70.4 0.0 1.9e-19 69.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 CQR55877.1 - 0.011 15.5 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR55877.1 - 0.036 14.1 0.0 0.33 11.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR55877.1 - 0.1 12.8 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 CQR55877.1 - 0.12 11.9 0.0 12 5.5 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_8 PF02954.19 CQR55877.1 - 0.13 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 CQR55877.1 - 0.14 11.8 0.0 0.41 10.2 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MFS_1 PF07690.16 CQR55878.1 - 1.1e-26 93.7 74.8 2e-20 73.0 40.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR55878.1 - 0.00097 18.5 22.8 0.0012 18.3 20.6 1.9 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB DUF1980 PF09323.10 CQR55878.1 - 5.1 7.0 6.1 2 8.3 2.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) Abhydrolase_1 PF00561.20 CQR55879.1 - 1.7e-22 80.3 0.0 2.9e-15 56.6 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR55879.1 - 6.1e-14 53.2 1.3 8e-14 52.8 1.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR55879.1 - 1.5e-12 47.3 0.0 3.1e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Esterase PF00756.20 CQR55879.1 - 0.0014 18.3 0.1 0.0024 17.6 0.1 1.3 1 0 0 1 1 1 1 Putative esterase Abhydrolase_4 PF08386.10 CQR55879.1 - 0.012 15.7 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Thioesterase PF00975.20 CQR55879.1 - 0.049 13.7 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain DUF2048 PF09752.9 CQR55879.1 - 0.068 12.3 0.2 0.13 11.3 0.1 1.4 2 0 0 2 2 2 0 Abhydrolase domain containing 18 Acyl_transf_2 PF02273.15 CQR55879.1 - 0.12 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase DUF2239 PF09998.9 CQR55880.1 - 2e-71 239.6 0.0 2.3e-71 239.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2239) PA PF02225.22 CQR55881.1 - 4.1e-05 23.5 0.2 0.00013 21.9 0.2 1.9 2 0 0 2 2 2 1 PA domain DUF3810 PF12725.7 CQR55881.1 - 1 8.6 3.2 2 7.6 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) TetR_N PF00440.23 CQR55883.1 - 5.7e-10 38.8 0.1 1.1e-09 38.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_13 PF16925.5 CQR55883.1 - 0.02 14.8 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DFF-C PF09033.10 CQR55883.1 - 0.045 13.7 0.1 0.064 13.2 0.1 1.3 1 0 0 1 1 1 0 DNA Fragmentation factor 45kDa, C terminal domain Virul_fac_BrkB PF03631.15 CQR55883.1 - 0.2 11.2 0.0 0.27 10.8 0.0 1.1 1 0 0 1 1 1 0 Virulence factor BrkB Acetyltransf_10 PF13673.7 CQR55884.1 - 5e-13 49.1 0.0 6.5e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR55884.1 - 2.8e-12 46.9 0.0 3.3e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR55884.1 - 2.3e-11 44.0 0.0 3.3e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR55884.1 - 0.00039 20.3 0.0 0.00077 19.4 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_18 PF18014.1 CQR55884.1 - 0.053 13.4 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Lep_receptor_Ig PF06328.11 CQR55884.1 - 0.083 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Ig-like C2-type domain 3Beta_HSD PF01073.19 CQR55886.1 - 1.7e-29 102.7 0.0 2.5e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 CQR55886.1 - 2.3e-23 82.9 0.0 3.5e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 CQR55886.1 - 2.9e-19 69.2 0.0 3.5e-13 49.3 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 CQR55886.1 - 1.4e-14 54.4 0.0 2e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR55886.1 - 3.1e-09 36.8 0.0 5e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 CQR55886.1 - 3.9e-07 29.5 0.0 4.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 CQR55886.1 - 1.6e-06 27.7 0.1 0.00014 21.4 0.1 2.7 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 CQR55886.1 - 1.5e-05 24.3 0.3 0.0034 16.6 0.3 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Peripla_BP_6 PF13458.6 CQR55886.1 - 0.001 18.8 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein KR PF08659.10 CQR55886.1 - 0.0054 16.7 2.1 0.16 11.8 2.1 2.6 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 CQR55886.1 - 0.084 12.3 0.4 0.83 9.1 0.4 2.2 1 1 0 1 1 1 0 short chain dehydrogenase NAD_binding_2 PF03446.15 CQR55886.1 - 0.15 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_C PF02800.20 CQR55887.1 - 1.7e-58 196.7 0.1 2.9e-58 195.9 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 CQR55887.1 - 8.3e-40 135.2 0.8 8.9e-39 131.9 0.1 2.7 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 CQR55887.1 - 0.0045 17.1 0.7 0.032 14.3 0.7 2.4 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 CQR55887.1 - 0.011 15.1 0.2 0.024 14.0 0.1 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 CQR55887.1 - 0.096 13.3 0.2 0.43 11.2 0.1 2.1 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain TetR_N PF00440.23 CQR55888.1 - 2.7e-10 39.9 0.0 3e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HpaB_N PF11794.8 CQR55892.1 - 2e-84 283.5 0.0 2.5e-84 283.2 0.0 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 CQR55892.1 - 1e-42 145.5 0.0 2e-42 144.6 0.0 1.4 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal HisKA PF00512.25 CQR55892.1 - 0.015 15.3 0.4 0.32 11.0 0.0 2.7 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Acyl-CoA_dh_M PF02770.19 CQR55892.1 - 0.043 14.0 0.0 0.2 11.9 0.0 2.0 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, middle domain HTH_Tnp_Tc5 PF03221.16 CQR55892.1 - 0.052 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Tc5 transposase DNA-binding domain HTH_Crp_2 PF13545.6 CQR55893.1 - 2.2e-14 53.2 1.3 3.7e-14 52.4 1.3 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 CQR55893.1 - 3.6e-08 33.4 0.0 7.7e-08 32.3 0.0 1.6 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain Crp PF00325.20 CQR55893.1 - 0.017 14.8 0.2 0.028 14.0 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family RepL PF05732.11 CQR55893.1 - 0.053 12.9 0.1 0.093 12.2 0.1 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF2892 PF11127.8 CQR55894.1 - 6.7e-13 48.5 0.8 7.8e-13 48.3 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) CMD PF02627.20 CQR55895.1 - 3.8e-16 58.9 0.2 4.5e-16 58.7 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 CQR55895.1 - 0.0035 16.3 0.0 0.0056 15.7 0.0 1.3 1 1 0 1 1 1 1 PA26 p53-induced protein (sestrin) DUF5371 PF17341.2 CQR55895.1 - 0.1 12.8 0.2 0.22 11.8 0.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5371) Aminotran_1_2 PF00155.21 CQR55896.1 - 0.03 13.5 0.1 0.03 13.5 0.1 1.1 1 0 0 1 1 1 0 Aminotransferase class I and II SHMT PF00464.19 CQR55897.1 - 1.3e-100 336.8 0.0 1.8e-100 336.3 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 CQR55897.1 - 8.7e-05 21.8 0.0 0.00012 21.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 CQR55898.1 - 2e-06 27.0 0.0 2.1e-06 26.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 CQR55899.1 - 2.2e-75 253.9 0.0 2.4e-75 253.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III GATase PF00117.28 CQR55900.1 - 9.5e-18 64.6 0.0 1.3e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 CQR55900.1 - 6.1e-06 26.1 0.1 1.8e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 CQR55900.1 - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_3 PF07685.14 CQR55900.1 - 0.031 13.9 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Beta-lactamase PF00144.24 CQR55901.1 - 3.4e-30 105.4 0.0 5.5e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase TetR_C_8 PF14278.6 CQR55903.1 - 2.1e-14 53.4 0.4 6.9e-14 51.8 0.0 1.9 2 1 0 2 2 2 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR55903.1 - 1.2e-10 41.0 0.0 2.3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR55903.1 - 0.011 15.9 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase FRB_dom PF08771.11 CQR55903.1 - 0.032 14.6 0.0 0.12 12.8 0.0 1.9 1 1 0 1 1 1 0 FKBP12-rapamycin binding domain Membrane_bind PF14564.6 CQR55903.1 - 0.057 13.8 0.0 0.093 13.2 0.0 1.3 1 0 0 1 1 1 0 Membrane binding HTH_23 PF13384.6 CQR55903.1 - 0.058 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 CQR55903.1 - 0.058 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 CQR55903.1 - 0.14 11.8 0.1 0.39 10.3 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2255 PF10012.9 CQR55904.1 - 1.2e-41 141.4 0.7 1.4e-41 141.3 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2255) Aldo_ket_red PF00248.21 CQR55905.1 - 3e-77 259.7 0.0 3.4e-77 259.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF4509 PF14970.6 CQR55905.1 - 0.051 13.5 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4509) Flavodoxin_2 PF02525.17 CQR55906.1 - 2.4e-42 144.9 0.0 2.8e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR55906.1 - 0.0025 17.6 0.0 0.0038 17.0 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Aldo_ket_red PF00248.21 CQR55907.1 - 2.2e-59 201.0 0.0 2.6e-59 200.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CMD PF02627.20 CQR55908.1 - 7.7e-38 128.4 0.0 7.2e-21 74.0 0.0 2.1 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family ADH_N PF08240.12 CQR55909.1 - 7.1e-30 103.1 5.6 7.1e-30 103.1 5.6 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 CQR55909.1 - 1.5e-22 80.0 0.0 2.3e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 CQR55909.1 - 1.6e-08 35.6 0.0 3e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 CQR55909.1 - 1.1e-06 28.1 0.1 2e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 CQR55909.1 - 0.0001 21.7 0.0 0.00018 20.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 CQR55909.1 - 0.0011 19.3 0.0 0.0021 18.5 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 CQR55909.1 - 0.0049 17.1 0.3 0.01 16.0 0.1 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 CQR55909.1 - 0.014 15.6 0.3 0.08 13.2 0.1 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 CQR55909.1 - 0.05 13.3 0.1 0.087 12.5 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IGFBP PF00219.18 CQR55909.1 - 0.062 14.0 3.5 0.11 13.1 3.5 1.3 1 0 0 1 1 1 0 Insulin-like growth factor binding protein ThiF PF00899.21 CQR55909.1 - 0.078 12.3 2.4 1.5 8.1 2.4 2.1 1 1 1 2 2 2 0 ThiF family 3HCDH_N PF02737.18 CQR55909.1 - 0.12 12.3 0.7 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 CQR55909.1 - 0.17 11.9 0.0 0.39 10.8 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase MFS_1 PF07690.16 CQR55910.1 - 2.7e-39 135.1 42.1 2.7e-39 135.1 42.1 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 CQR55910.1 - 2.8e-09 35.9 22.1 3.3e-09 35.7 22.1 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 CQR55910.1 - 6.8e-07 28.5 3.8 6.8e-07 28.5 3.8 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_4 PF06779.14 CQR55910.1 - 0.00046 19.6 27.5 0.0015 17.9 27.5 2.0 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF5305 PF17231.2 CQR55910.1 - 0.21 11.0 0.2 3.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5305) CMD PF02627.20 CQR55911.1 - 5.4e-12 45.6 0.0 6.6e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cyclophil_like2 PF18050.1 CQR55912.1 - 2.1e-15 56.7 0.0 2.3e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like family Aldo_ket_red PF00248.21 CQR55913.1 - 3.2e-35 121.8 0.1 4.5e-34 118.0 0.1 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family VP4_helical PF17478.2 CQR55913.1 - 0.066 12.6 0.0 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 Rotavirus VP4 helical domain Cupin_2 PF07883.11 CQR55914.1 - 3.9e-09 36.1 0.4 5.6e-09 35.6 0.4 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 CQR55914.1 - 0.0013 18.4 0.2 0.0019 17.8 0.2 1.3 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 CQR55914.1 - 0.0013 18.5 0.1 0.0015 18.3 0.1 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 CQR55914.1 - 0.002 18.0 0.2 0.0025 17.7 0.2 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain adh_short PF00106.25 CQR55915.1 - 2.2e-14 53.4 0.0 3e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55915.1 - 7.3e-06 25.7 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55915.1 - 4.8e-05 23.3 0.0 7.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 KR domain Phage_endo_I PF05367.11 CQR55915.1 - 0.0066 16.1 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Phage endonuclease I MLTR_LBD PF17765.1 CQR55916.1 - 8.9e-31 107.3 0.0 1.3e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 MmyB-like transcription regulator ligand binding domain HTH_31 PF13560.6 CQR55916.1 - 1.7e-18 66.7 0.5 2.8e-18 66.0 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR55916.1 - 3.5e-05 23.8 0.2 0.0001 22.3 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix DUF2610 PF11020.8 CQR55916.1 - 0.02 14.7 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) HTH_19 PF12844.7 CQR55916.1 - 0.023 14.7 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain ADH_zinc_N PF00107.26 CQR55917.1 - 3.5e-22 78.8 0.1 5.5e-22 78.1 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 CQR55917.1 - 4.1e-15 57.0 0.0 9.2e-15 55.9 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 CQR55917.1 - 8.1e-07 28.9 0.0 2.8e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 CQR55918.1 - 9.1e-22 77.5 0.0 1.1e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR55918.1 - 2.6e-16 59.9 0.0 3.2e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR55918.1 - 3.8e-08 33.4 0.0 7.2e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 CQR55918.1 - 0.00026 20.9 0.0 0.0004 20.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 CQR55918.1 - 0.001 19.6 0.2 0.0024 18.4 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 CQR55918.1 - 0.0015 17.8 0.0 0.0017 17.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR55918.1 - 0.0079 15.5 0.0 0.015 14.5 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain V-SNARE PF05008.15 CQR55918.1 - 0.013 15.8 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus NAD_Gly3P_dh_N PF01210.23 CQR55918.1 - 0.014 15.3 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 CQR55918.1 - 0.034 14.2 0.0 0.3 11.1 0.0 2.2 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.13 CQR55918.1 - 0.056 13.0 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family NAD_binding_2 PF03446.15 CQR55918.1 - 0.072 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Response_reg PF00072.24 CQR55919.1 - 3.2e-28 98.1 0.1 5e-28 97.5 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR55919.1 - 1e-23 83.2 0.1 2.4e-23 82.0 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR55919.1 - 0.093 13.0 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c PF02518.26 CQR55920.1 - 1.5e-20 73.8 0.3 3.2e-20 72.7 0.2 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55920.1 - 4.2e-08 33.1 0.7 4.2e-08 33.1 0.7 2.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR55920.1 - 3.9e-06 27.2 0.0 7.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR55920.1 - 0.0021 17.9 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55920.1 - 0.0068 16.4 0.0 0.023 14.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain COMP PF11598.8 CQR55920.1 - 0.025 15.0 0.3 0.085 13.3 0.3 1.9 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein LisH_TPL PF17814.1 CQR55920.1 - 0.14 11.8 0.6 0.39 10.4 0.6 1.8 1 0 0 1 1 1 0 LisH-like dimerisation domain ABC_tran PF00005.27 CQR55921.1 - 3.4e-33 115.0 0.0 4.8e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55921.1 - 3.9e-08 33.0 0.5 0.00029 20.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR55921.1 - 9.9e-07 28.9 0.3 0.034 14.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR55921.1 - 0.00023 20.8 0.0 0.00046 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 CQR55921.1 - 0.0019 18.0 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 CQR55921.1 - 0.002 18.1 0.1 0.0037 17.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR55921.1 - 0.0099 16.3 0.1 0.01 16.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 CQR55921.1 - 0.018 14.3 0.1 0.069 12.3 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 CQR55921.1 - 0.02 15.4 0.2 0.031 14.8 0.2 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR55921.1 - 0.021 14.9 0.1 0.073 13.2 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 CQR55921.1 - 0.021 15.1 0.6 0.05 13.9 0.6 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 CQR55921.1 - 0.024 14.7 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_30 PF13604.6 CQR55921.1 - 0.042 13.6 0.0 0.088 12.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 CQR55921.1 - 0.046 13.1 0.1 6.5 6.0 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_10 PF12846.7 CQR55921.1 - 0.054 12.4 0.0 0.53 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.6 CQR55921.1 - 0.07 11.8 0.3 4.5 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 CQR55921.1 - 0.072 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR55921.1 - 0.076 12.7 0.3 0.57 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 CQR55921.1 - 0.083 12.8 0.2 0.36 10.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.18 CQR55921.1 - 0.084 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_25 PF13481.6 CQR55921.1 - 0.13 11.9 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR55921.1 - 0.13 12.8 0.0 0.22 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF5321 PF17254.2 CQR55921.1 - 0.14 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5321) AAA_33 PF13671.6 CQR55921.1 - 0.16 12.2 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 CQR55921.1 - 0.16 11.9 0.2 0.74 9.7 0.0 1.9 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 SbcCD_C PF13558.6 CQR55921.1 - 0.16 12.2 0.1 1.8 8.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Herpes_LP PF03363.13 CQR55921.1 - 0.17 11.7 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus leader protein FtsX PF02687.21 CQR55922.1 - 4.3e-22 78.4 34.5 1.7e-12 47.6 4.2 5.7 6 0 0 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 CQR55922.1 - 7.2e-12 46.1 9.3 8.4e-07 29.5 0.0 3.5 4 0 0 4 4 4 2 MacB-like periplasmic core domain DUF3173 PF11372.8 CQR55922.1 - 0.0057 16.5 0.2 0.018 14.9 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3173) Sigma_reg_N PF13800.6 CQR55922.1 - 0.34 11.2 18.1 0.35 11.2 0.1 4.7 4 0 0 4 4 4 0 Sigma factor regulator N-terminal HTH_32 PF13565.6 CQR55923.1 - 4.3e-15 56.1 0.2 1.4e-14 54.5 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.6 CQR55923.1 - 3.6e-10 39.3 0.1 1.6e-09 37.3 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 CQR55923.1 - 1.1e-08 35.0 0.0 2.1e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 CQR55923.1 - 9.7e-06 25.6 0.0 2.1e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 CQR55923.1 - 0.12 12.8 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_18 PF12833.7 CQR55927.1 - 2.8e-10 40.3 0.0 4.9e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55927.1 - 0.00053 20.0 0.1 0.0027 17.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family AICARFT_IMPCHas PF01808.18 CQR55927.1 - 0.062 12.7 0.0 0.07 12.6 0.0 1.1 1 0 0 1 1 1 0 AICARFT/IMPCHase bienzyme DUF4251 PF14059.6 CQR55927.1 - 0.094 12.7 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4251) Glyco_hydro_43 PF04616.14 CQR55928.1 - 4.2e-16 59.1 0.1 5.8e-16 58.7 0.1 1.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 DUF179 PF02622.15 CQR55928.1 - 0.14 12.1 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, COG1678 Amidohydro_2 PF04909.14 CQR55929.1 - 9.2e-26 91.3 0.0 1.3e-25 90.8 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase DUF3113 PF11310.8 CQR55929.1 - 0.14 12.1 0.1 0.38 10.7 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3113) Iso_dh PF00180.20 CQR55931.1 - 4.5e-89 299.0 0.0 5.1e-89 298.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase GFO_IDH_MocA PF01408.22 CQR55932.1 - 1.8e-18 67.5 0.0 3.5e-18 66.6 0.0 1.5 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR55932.1 - 2.3e-05 24.4 0.3 0.00064 19.7 0.0 2.4 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding_2 PF13380.6 CQR55932.1 - 0.0043 17.5 0.0 0.0078 16.7 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.17 CQR55932.1 - 0.043 14.4 0.0 0.082 13.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.24 CQR55933.1 - 8.2e-07 28.7 0.1 1.5e-06 27.8 0.1 1.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel SBD_N PF07005.11 CQR55934.1 - 2.8e-48 164.6 0.0 4.1e-48 164.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-binding N-terminal domain NBD_C PF17042.5 CQR55934.1 - 2.3e-35 122.6 0.0 4.2e-35 121.7 0.0 1.4 1 0 0 1 1 1 1 Nucleotide-binding C-terminal domain Aldolase_II PF00596.21 CQR55935.1 - 1.1e-32 113.5 0.0 1.3e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain FCD PF07729.12 CQR55936.1 - 2.1e-19 70.2 0.3 3.2e-19 69.6 0.3 1.3 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR55936.1 - 2.7e-14 52.6 0.1 5.9e-14 51.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 CQR55936.1 - 0.013 15.4 0.0 0.039 13.9 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 CQR55936.1 - 0.017 14.7 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_8 PF02954.19 CQR55936.1 - 0.076 12.8 0.3 4.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_DeoR PF08220.12 CQR55936.1 - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain NAD_binding_5 PF07994.12 CQR55936.1 - 0.14 11.6 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase MFS_2 PF13347.6 CQR55937.1 - 1.7e-99 333.3 33.8 1.9e-99 333.1 33.8 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 CQR55937.1 - 2.8e-15 56.1 57.0 8e-14 51.3 32.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily TssO PF17561.2 CQR55937.1 - 0.035 14.2 0.2 0.12 12.5 0.2 1.8 1 0 0 1 1 1 0 Type VI secretion system, TssO Ndc1_Nup PF09531.10 CQR55937.1 - 0.6 8.7 2.9 1.2 7.7 2.9 1.4 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup PspB PF06667.12 CQR55938.1 - 0.0024 17.9 0.4 0.0028 17.7 0.4 1.1 1 0 0 1 1 1 1 Phage shock protein B DUF4293 PF14126.6 CQR55938.1 - 0.011 16.0 0.3 0.012 15.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) TssO PF17561.2 CQR55938.1 - 0.062 13.4 0.2 0.064 13.4 0.2 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssO Phage_integrase PF00589.22 CQR55940.1 - 9.5e-30 103.6 0.4 1.9e-29 102.6 0.4 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 CQR55940.1 - 1.4e-06 28.5 0.6 1.1e-05 25.6 0.2 2.6 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 CQR55940.1 - 6.8e-05 23.3 0.8 0.00024 21.5 0.8 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DIMCO_N PF16844.5 CQR55940.1 - 0.019 15.3 0.2 1.5 9.2 0.1 2.9 2 1 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor, N-terminal FANCI_S2 PF14676.6 CQR55940.1 - 0.071 13.4 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 FANCI solenoid 2 ROQ_II PF18386.1 CQR55940.1 - 0.13 12.1 1.2 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 Roquin II domain Phage_int_SAM_5 PF13102.6 CQR55940.1 - 0.46 10.9 6.8 0.43 11.0 1.8 3.0 2 1 1 3 3 3 0 Phage integrase SAM-like domain Response_reg PF00072.24 CQR55941.1 - 8.3e-27 93.6 0.1 1.7e-26 92.5 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR55941.1 - 1.6e-15 57.1 0.0 3.8e-15 55.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55941.1 - 2.5e-08 33.8 0.0 4.1e-05 23.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family FAM177 PF14774.6 CQR55941.1 - 0.038 14.4 0.0 0.093 13.1 0.0 1.6 1 0 0 1 1 1 0 FAM177 family Tox-MPTase3 PF15639.6 CQR55941.1 - 0.042 13.7 0.1 0.11 12.3 0.1 1.9 1 1 0 1 1 1 0 Metallopeptidase toxin 3 His_kinase PF06580.13 CQR55942.1 - 2.7e-26 91.7 2.6 2.7e-26 91.7 2.6 2.3 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR55942.1 - 6.5e-19 68.7 2.5 6.5e-19 68.7 2.5 2.0 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR55942.1 - 4.5e-08 33.3 0.0 1.2e-07 31.9 0.0 1.8 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR55942.1 - 7.7e-08 32.8 0.0 1.9e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55942.1 - 0.0024 17.8 0.1 0.01 15.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR55942.1 - 0.019 14.8 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YtpI PF14007.6 CQR55942.1 - 0.066 13.3 0.2 0.18 12.0 0.2 1.7 1 0 0 1 1 1 0 YtpI-like protein RicinB_lectin_2 PF14200.6 CQR55943.1 - 7.3e-64 212.5 38.9 1.1e-21 77.4 5.2 5.4 3 2 3 6 6 6 5 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 CQR55943.1 - 3.3e-21 75.9 6.2 1.4e-10 41.5 0.6 3.2 1 1 1 3 3 3 3 Ricin-type beta-trefoil lectin domain DUF3823 PF12866.7 CQR55943.1 - 0.08 13.3 1.6 2.9 8.3 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3823) N-terminal domain BNR PF02012.20 CQR55943.1 - 0.61 10.3 11.9 0.61 10.3 0.5 5.0 4 0 0 4 4 4 0 BNR/Asp-box repeat BPD_transp_1 PF00528.22 CQR55944.1 - 2e-16 60.3 19.1 2e-16 60.3 19.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR55945.1 - 6.5e-21 74.9 14.5 6.5e-21 74.9 14.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PDR_assoc PF08370.11 CQR55945.1 - 0.087 12.6 4.5 0.32 10.7 0.0 2.9 2 0 0 2 2 2 0 Plant PDR ABC transporter associated SBP_bac_8 PF13416.6 CQR55946.1 - 6.2e-49 167.3 2.9 8.9e-49 166.8 2.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR55946.1 - 1.9e-35 123.4 5.1 2.9e-35 122.8 5.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR55946.1 - 3.6e-10 39.7 0.8 6.8e-06 25.7 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein RibD_C PF01872.17 CQR55947.1 - 9.7e-23 81.0 0.0 1.3e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 RibD C-terminal domain DUF1967 PF09269.11 CQR55947.1 - 0.097 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) Aldo_ket_red PF00248.21 CQR55948.1 - 1.7e-54 185.0 0.0 2e-54 184.8 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family AraC_binding PF02311.19 CQR55949.1 - 0.032 14.1 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain EpsG PF14897.6 CQR55951.1 - 0.86 8.9 36.7 1.8 7.8 14.6 2.3 1 1 1 2 2 2 0 EpsG family MFS_1 PF07690.16 CQR55953.1 - 3e-33 115.2 61.7 2.2e-27 96.0 40.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR55953.1 - 8.8e-06 25.3 39.3 1.1e-05 24.9 39.3 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB TetR_N PF00440.23 CQR55954.1 - 4e-09 36.1 0.0 6.7e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_17 PF17922.1 CQR55954.1 - 3.6e-06 27.0 0.0 6.7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 CQR55954.1 - 2.7e-05 24.1 0.0 4.9e-05 23.2 0.0 1.5 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 CQR55954.1 - 0.0063 16.8 0.1 0.021 15.1 0.0 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Med7 PF05983.11 CQR55954.1 - 0.042 13.9 0.1 0.054 13.6 0.1 1.3 1 0 0 1 1 1 0 MED7 protein TetR_C_11 PF16859.5 CQR55954.1 - 0.077 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain ABC2_membrane_4 PF12730.7 CQR55955.1 - 0.00013 21.9 8.3 0.00013 21.9 8.3 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR55955.1 - 0.001 18.5 18.4 0.022 14.0 18.4 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein AAA_21 PF13304.6 CQR55957.1 - 1.1e-06 28.8 0.0 1.2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF4180 PF13788.6 CQR55957.1 - 0.014 15.3 0.1 0.018 14.9 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4180) ABC_tran PF00005.27 CQR55957.1 - 0.064 13.8 0.1 0.13 12.8 0.1 1.5 1 0 0 1 1 1 0 ABC transporter HisKA PF00512.25 CQR55959.1 - 1e-09 38.3 1.0 2e-09 37.3 1.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 CQR55959.1 - 5.6e-06 26.8 0.1 2.1e-05 25.0 0.1 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMEM132D_C PF15706.5 CQR55959.1 - 0.00029 20.6 0.2 0.00068 19.4 0.2 1.5 1 0 0 1 1 1 1 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term HAMP PF00672.25 CQR55959.1 - 0.00058 20.2 0.2 0.0021 18.4 0.0 2.1 2 1 0 2 2 2 1 HAMP domain PEN-2 PF10251.9 CQR55959.1 - 0.37 11.2 3.6 0.66 10.4 3.6 1.4 1 0 0 1 1 1 0 Presenilin enhancer-2 subunit of gamma secretase DUF485 PF04341.12 CQR55959.1 - 0.53 10.3 6.5 1 9.3 6.5 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF485 RseC_MucC PF04246.12 CQR55959.1 - 3.1 7.8 3.8 5.3 7.0 3.8 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Trans_reg_C PF00486.28 CQR55960.1 - 1.2e-24 86.2 0.1 2.3e-24 85.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR55960.1 - 2e-19 69.8 0.0 3.1e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Glyco_transf_28 PF03033.20 CQR55960.1 - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Acyltransf_C PF16076.5 CQR55960.1 - 0.15 12.1 0.1 0.32 11.1 0.1 1.6 1 0 0 1 1 1 0 Acyltransferase C-terminus Glyco_hydro_127 PF07944.12 CQR55961.1 - 5.5e-95 318.8 0.4 2.1e-92 310.3 0.4 2.2 1 1 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 FtsX PF02687.21 CQR55962.1 - 4e-17 62.5 7.2 1.4e-10 41.5 2.8 4.8 6 1 0 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 CQR55962.1 - 1.1e-08 35.7 1.2 0.0025 18.2 0.0 2.8 3 0 0 3 3 3 2 MacB-like periplasmic core domain Ctr PF04145.15 CQR55962.1 - 6.5 7.4 7.0 3.6 8.2 2.4 2.9 2 1 0 2 2 2 0 Ctr copper transporter family ABC_tran PF00005.27 CQR55963.1 - 6e-32 111.0 0.0 9.9e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55963.1 - 3.3e-06 26.7 0.8 0.00041 19.9 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR55963.1 - 0.00011 22.1 0.1 0.0002 21.3 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 CQR55963.1 - 0.0014 18.5 0.2 0.076 12.8 0.6 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR55963.1 - 0.0017 18.0 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR55963.1 - 0.013 15.2 0.5 0.077 12.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 CQR55963.1 - 0.017 15.4 0.1 0.1 12.8 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 CQR55963.1 - 0.018 15.5 0.2 0.033 14.6 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 CQR55963.1 - 0.02 14.6 0.0 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 CQR55963.1 - 0.021 14.9 0.3 0.061 13.4 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 CQR55963.1 - 0.022 14.8 0.1 0.04 14.0 0.1 1.5 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.6 CQR55963.1 - 0.031 14.8 0.2 0.066 13.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR55963.1 - 0.052 13.1 0.1 0.68 9.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 CQR55963.1 - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 CQR55963.1 - 0.14 12.5 0.4 0.51 10.6 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR55963.1 - 0.14 12.7 0.1 0.45 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain GntR PF00392.21 CQR55964.1 - 2.8e-06 26.9 0.0 5.9e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 CQR55964.1 - 0.064 13.6 0.1 0.12 12.7 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator ABC_tran PF00005.27 CQR55965.1 - 1.9e-16 60.8 0.0 3.5e-16 60.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR55965.1 - 3.1e-10 40.4 0.6 9.2e-05 22.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR55965.1 - 0.00034 21.2 0.0 0.00053 20.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR55965.1 - 0.0011 18.9 0.1 0.002 18.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_13 PF13166.6 CQR55965.1 - 0.031 12.9 0.0 0.042 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR55965.1 - 0.038 14.1 0.4 0.1 12.7 0.3 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 CQR55965.1 - 0.054 13.3 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR55965.1 - 0.12 12.1 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 CQR55965.1 - 0.28 10.8 0.5 0.5 9.9 0.5 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TetR_N PF00440.23 CQR55967.1 - 2.3e-06 27.3 0.0 5.7e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Peptidase_M24 PF00557.24 CQR55968.1 - 5.7e-54 183.0 0.2 6.4e-54 182.8 0.2 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 SIS PF01380.22 CQR55969.1 - 2.9e-17 62.7 0.0 4e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 CQR55969.1 - 4e-08 33.4 2.1 0.0003 20.8 0.1 2.2 1 1 1 2 2 2 2 SIS domain OMPdecase PF00215.24 CQR55970.1 - 3.2e-20 72.7 0.6 1.3e-19 70.7 0.6 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family MFS_1 PF07690.16 CQR55971.1 - 3.1e-57 194.1 47.3 5.8e-47 160.3 18.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR55971.1 - 5.6e-08 32.5 25.6 1.5e-06 27.8 25.6 2.1 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 CQR55971.1 - 2.8e-05 23.2 27.2 0.00018 20.5 27.2 2.1 1 1 0 1 1 1 1 Sugar (and other) transporter Ost5 PF05251.12 CQR55971.1 - 5.3 7.4 24.1 0.19 12.0 1.8 4.7 3 2 2 5 5 5 0 Oligosaccharyltransferase subunit 5 PfkB PF00294.24 CQR55972.1 - 1.6e-58 198.4 0.0 1.8e-58 198.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR55972.1 - 0.0019 17.7 0.0 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase AP_endonuc_2 PF01261.24 CQR55973.1 - 8e-06 25.4 0.0 1.5e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel CNTF PF01110.17 CQR55973.1 - 0.014 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Ciliary neurotrophic factor Peripla_BP_3 PF13377.6 CQR55974.1 - 3e-37 128.5 0.0 1.8e-35 122.7 0.0 2.1 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR55974.1 - 1.7e-28 99.9 0.0 2.2e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR55974.1 - 6.1e-17 61.1 0.6 4.5e-16 58.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR55974.1 - 2.1e-10 40.6 0.0 2.9e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain MarR_2 PF12802.7 CQR55974.1 - 0.0012 18.6 0.1 0.028 14.3 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.22 CQR55974.1 - 0.0094 16.0 0.0 0.027 14.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_10 PF04967.12 CQR55974.1 - 0.019 14.7 0.0 0.05 13.4 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_5 PF01022.20 CQR55974.1 - 0.02 14.8 0.0 0.058 13.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family YdaS_antitoxin PF15943.5 CQR55974.1 - 0.022 14.6 0.0 0.068 13.0 0.0 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SpoIIID PF12116.8 CQR55974.1 - 0.028 14.5 0.0 0.092 12.9 0.0 1.9 2 0 0 2 2 1 0 Stage III sporulation protein D HTH_IclR PF09339.10 CQR55974.1 - 0.031 14.1 0.0 0.066 13.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_31 PF13560.6 CQR55974.1 - 0.04 14.3 0.0 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 CQR55974.1 - 0.046 13.5 0.1 0.1 12.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family MerR PF00376.23 CQR55974.1 - 0.061 13.1 0.2 0.15 11.9 0.2 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Fe_dep_repress PF01325.19 CQR55974.1 - 0.11 12.7 0.0 0.33 11.2 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 CQR55974.1 - 0.11 12.3 0.0 0.79 9.6 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain FtsX PF02687.21 CQR55975.1 - 1.2e-16 61.0 36.4 8e-11 42.3 3.4 5.5 6 0 0 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 CQR55975.1 - 3.6e-10 40.5 13.0 6.5e-10 39.7 0.0 4.0 4 2 0 4 4 4 2 MacB-like periplasmic core domain Yip1 PF04893.17 CQR55975.1 - 0.0004 20.1 20.9 0.017 14.8 3.0 3.3 3 0 0 3 3 3 2 Yip1 domain LXG PF04740.12 CQR55975.1 - 0.089 12.5 0.2 0.089 12.5 0.2 2.1 2 0 0 2 2 2 0 LXG domain of WXG superfamily DUF2975 PF11188.8 CQR55975.1 - 4.8 7.1 23.2 2.8 7.8 4.3 5.2 5 1 0 5 5 5 0 Protein of unknown function (DUF2975) ABC_tran PF00005.27 CQR55976.1 - 5.1e-33 114.5 0.0 7.1e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55976.1 - 2.3e-09 37.0 2.3 3.9e-08 33.0 2.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR55976.1 - 1e-05 25.5 2.8 0.029 14.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 CQR55976.1 - 2.8e-05 23.9 0.2 0.011 15.4 0.0 2.3 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.6 CQR55976.1 - 6e-05 22.7 0.1 0.00012 21.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR55976.1 - 0.00054 19.9 0.1 0.0011 18.9 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 CQR55976.1 - 0.0027 17.5 0.0 0.12 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 CQR55976.1 - 0.0027 18.0 1.3 0.0054 17.0 0.1 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 CQR55976.1 - 0.0034 17.8 0.1 0.0062 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 CQR55976.1 - 0.004 16.3 0.1 0.0086 15.2 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_24 PF13479.6 CQR55976.1 - 0.0051 16.6 0.1 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 CQR55976.1 - 0.0097 16.4 0.2 0.028 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 CQR55976.1 - 0.028 14.0 0.1 0.086 12.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR55976.1 - 0.035 14.3 0.0 0.053 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR55976.1 - 0.038 14.2 0.0 0.068 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR55976.1 - 0.042 13.9 0.2 0.077 13.1 0.2 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 CQR55976.1 - 0.054 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 CQR55976.1 - 0.062 13.4 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATPase_2 PF01637.18 CQR55976.1 - 0.067 13.1 0.1 0.27 11.1 0.0 2.0 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 CQR55976.1 - 0.067 13.7 1.3 0.24 11.9 1.3 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR55976.1 - 0.086 12.8 0.1 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 CQR55976.1 - 0.11 12.2 0.1 0.28 10.9 0.1 1.4 1 1 0 1 1 1 0 Cytidylate kinase VanZ PF04892.12 CQR55977.1 - 2.7e-18 66.8 9.0 5.5e-18 65.8 9.0 1.4 1 0 0 1 1 1 1 VanZ like family DUF5353 PF17304.2 CQR55977.1 - 0.067 12.9 2.2 0.29 10.9 2.2 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5353) DUF1214 PF06742.11 CQR55977.1 - 0.094 13.2 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1214) HATPase_c PF02518.26 CQR55978.1 - 2.3e-18 66.7 0.5 6.1e-18 65.4 0.5 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR55978.1 - 4.6e-11 42.6 0.1 3.8e-10 39.7 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR55978.1 - 1.3e-07 31.5 0.4 3.3e-07 30.2 0.1 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR55978.1 - 0.017 15.1 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Trans_reg_C PF00486.28 CQR55979.1 - 7.4e-24 83.6 0.0 1.4e-23 82.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR55979.1 - 2.8e-21 75.8 0.1 4.5e-21 75.1 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Abhydrolase_1 PF00561.20 CQR55980.1 - 7.7e-09 35.6 0.0 1.2e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR55980.1 - 2.8e-05 24.9 0.0 3.4e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR55980.1 - 0.0001 21.7 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Cor1 PF04803.12 CQR55980.1 - 0.021 15.0 3.9 1.9 8.7 1.1 2.5 1 1 1 2 2 2 0 Cor1/Xlr/Xmr conserved region DUF2970 PF11174.8 CQR55980.1 - 0.023 14.6 0.1 0.056 13.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) PPDK_N PF01326.19 CQR55981.1 - 1.4e-93 313.8 0.0 2.1e-93 313.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 CQR55981.1 - 3.9e-23 80.9 0.1 2e-22 78.7 0.1 2.2 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain DUF1858 PF08984.11 CQR55981.1 - 0.038 14.1 0.0 34 4.7 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF1858) Methyltransf_11 PF08241.12 CQR55982.1 - 8.6e-22 77.6 0.0 1.3e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR55982.1 - 1.4e-19 70.6 0.0 2.3e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR55982.1 - 1.8e-13 50.6 0.0 2.3e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR55982.1 - 2.3e-13 50.3 0.0 2.7e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR55982.1 - 3.2e-13 50.2 0.0 6.6e-13 49.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR55982.1 - 2.5e-12 46.7 0.0 3.2e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 CQR55982.1 - 4e-06 26.5 0.0 5.1e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 CQR55982.1 - 1.1e-05 25.1 0.0 1.4e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 CQR55982.1 - 0.002 17.8 0.0 0.0028 17.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 CQR55982.1 - 0.003 16.9 0.0 0.0038 16.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 CQR55982.1 - 0.0059 15.7 0.0 0.0075 15.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 CQR55982.1 - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.18 CQR55982.1 - 0.019 14.2 0.0 0.026 13.8 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain PrmA PF06325.13 CQR55982.1 - 0.031 13.7 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ACP_syn_III_C PF08541.10 CQR55982.1 - 0.1 12.8 0.4 1 9.6 0.2 2.5 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PCMT PF01135.19 CQR55982.1 - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N PF00107.26 CQR55982.1 - 0.15 12.0 0.1 0.37 10.8 0.0 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Glyco_hydro_2_N PF02837.18 CQR55983.1 - 2.2e-17 63.5 0.6 8.5e-17 61.6 0.6 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 CQR55983.1 - 2e-10 40.3 0.1 8.8e-09 34.9 0.1 2.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.21 CQR55983.1 - 1.9e-08 34.9 0.0 4e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 HTH_18 PF12833.7 CQR55984.1 - 7.9e-16 58.1 0.0 1.3e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR55984.1 - 3.8e-11 42.8 0.2 5.4e-06 26.4 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR55984.1 - 0.022 14.7 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 AraC-like ligand binding domain MFS_1 PF07690.16 CQR55985.1 - 4.4e-48 164.0 44.1 4.4e-48 164.0 44.1 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 CQR55985.1 - 8.9e-06 24.5 35.2 6.2e-05 21.7 5.6 3.2 1 1 1 3 3 3 2 MFS/sugar transport protein TRI12 PF06609.13 CQR55985.1 - 0.00072 18.1 23.3 0.0057 15.1 15.6 2.3 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) DUF5367 PF17329.2 CQR55985.1 - 5.7 7.1 8.5 0.67 10.1 0.2 3.8 4 1 0 4 4 4 0 Family of unknown function (DUF5367) TetR_C_11 PF16859.5 CQR55986.1 - 1.2e-14 54.6 0.5 4e-14 52.9 0.0 1.9 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR55986.1 - 2.5e-12 46.4 0.1 6.3e-12 45.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR55986.1 - 0.062 13.5 0.0 0.4 10.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Abhydrolase_1 PF00561.20 CQR55987.1 - 8.3e-21 74.8 0.0 5.1e-20 72.2 0.0 1.9 1 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR55987.1 - 1.7e-18 68.0 0.2 2.2e-18 67.7 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR55987.1 - 7.2e-13 48.3 0.0 1.1e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 CQR55987.1 - 1.8e-05 23.6 0.0 2.7e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Ndr family PGAP1 PF07819.13 CQR55987.1 - 4.4e-05 23.3 0.0 6.8e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 PGAP1-like protein DUF915 PF06028.11 CQR55987.1 - 0.00056 19.3 0.0 0.0021 17.5 0.0 1.9 1 1 1 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Thioesterase PF00975.20 CQR55987.1 - 0.00061 20.0 0.1 0.00088 19.4 0.0 1.5 2 0 0 2 2 1 1 Thioesterase domain UPF0227 PF05728.12 CQR55987.1 - 0.005 16.8 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Lipase_3 PF01764.25 CQR55987.1 - 0.0078 16.1 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Lipase (class 3) LCAT PF02450.15 CQR55987.1 - 0.02 14.1 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase DUF900 PF05990.12 CQR55987.1 - 0.028 13.9 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Esterase PF00756.20 CQR55987.1 - 0.033 13.9 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_3 PF07859.13 CQR55987.1 - 0.05 13.5 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 CQR55987.1 - 0.058 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family BAAT_C PF08840.11 CQR55987.1 - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Chlorophyllase2 PF12740.7 CQR55987.1 - 0.11 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme DUF2974 PF11187.8 CQR55987.1 - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) AAA_21 PF13304.6 CQR55988.1 - 1.1e-16 61.5 4.8 3.2e-11 43.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR55988.1 - 1.4e-12 48.0 9.1 1.3e-08 35.0 0.1 2.5 1 1 1 2 2 2 2 AAA ATPase domain ABC_tran PF00005.27 CQR55988.1 - 1.9e-10 41.4 0.1 3.6e-10 40.5 0.1 1.4 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR55988.1 - 7.4e-09 35.4 2.5 1e-07 31.7 2.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR55988.1 - 3.9e-05 24.2 2.9 0.00015 22.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR55988.1 - 0.00031 20.7 0.2 0.00075 19.4 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_13 PF13166.6 CQR55988.1 - 0.00037 19.3 0.2 0.00037 19.3 0.2 1.9 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR55988.1 - 0.00044 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RNA_helicase PF00910.22 CQR55988.1 - 0.0023 18.3 0.2 0.059 13.8 0.0 2.7 2 1 0 2 2 2 1 RNA helicase ATPase_2 PF01637.18 CQR55988.1 - 0.0031 17.5 0.3 0.005 16.8 0.2 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 CQR55988.1 - 0.0031 17.9 0.1 0.0064 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF5377 PF17347.2 CQR55988.1 - 0.0053 17.1 0.1 0.7 10.3 0.1 2.5 2 0 0 2 2 2 1 Family of unknown function (DUF5377) AAA_22 PF13401.6 CQR55988.1 - 0.0071 16.6 0.3 0.036 14.3 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 CQR55988.1 - 0.014 15.9 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 CQR55988.1 - 0.016 15.1 0.0 0.048 13.6 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 CQR55988.1 - 0.056 13.4 0.1 1.5 8.8 0.0 2.4 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 CQR55988.1 - 0.06 13.4 0.4 0.16 12.1 0.4 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 CQR55988.1 - 0.12 12.1 0.0 0.36 10.5 0.0 1.8 2 1 1 3 3 3 0 AAA domain AAA_14 PF13173.6 CQR55988.1 - 0.14 12.2 1.8 3 7.9 0.0 2.7 1 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 CQR55988.1 - 0.14 12.7 0.3 0.72 10.4 0.3 2.2 1 1 0 1 1 1 0 AAA domain KNTase_C PF07827.11 CQR55989.1 - 2.7e-42 143.7 0.0 3.9e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 KNTase C-terminal domain Polbeta PF18765.1 CQR55989.1 - 0.0014 18.6 0.0 0.0027 17.8 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 CQR55989.1 - 0.06 13.6 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyltransferase domain TPR_2 PF07719.17 CQR55990.1 - 0.0022 18.0 2.5 2 8.7 1.0 3.2 2 0 0 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 CQR55990.1 - 0.011 15.8 4.5 0.048 13.7 0.9 2.6 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat Fibroin_P25 PF07294.11 CQR55990.1 - 0.054 13.5 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 Fibroin P25 TPR_20 PF14561.6 CQR55990.1 - 0.058 13.7 0.6 0.18 12.1 0.3 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 CQR55990.1 - 0.16 12.2 4.7 1.1 9.6 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 CQR55990.1 - 0.29 11.0 2.8 1.8 8.5 0.1 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat PPDK_N PF01326.19 CQR55991.1 - 3.1e-96 322.5 0.0 4.8e-96 321.9 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 CQR55991.1 - 2.4e-22 78.4 0.1 1.2e-21 76.2 0.1 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Cass2 PF14526.6 CQR55993.1 - 3.9e-27 95.2 0.0 4.4e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein GyrI-like PF06445.15 CQR55993.1 - 0.00028 21.2 0.0 0.00045 20.6 0.0 1.3 1 0 0 1 1 1 1 GyrI-like small molecule binding domain DUF2635 PF10948.8 CQR55993.1 - 0.12 12.1 0.2 4.9 7.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) HTH_11 PF08279.12 CQR55994.1 - 1.1e-12 47.7 0.6 4.4e-12 45.7 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 CQR55994.1 - 1.8e-07 30.8 0.1 4.4e-07 29.6 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Mga PF05043.13 CQR55994.1 - 0.0005 20.6 0.3 0.0021 18.6 0.0 2.2 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_28 PF13518.6 CQR55994.1 - 0.0017 18.5 0.1 0.0036 17.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain WYL PF13280.6 CQR55994.1 - 0.0043 17.1 0.1 0.0067 16.5 0.1 1.3 1 0 0 1 1 1 1 WYL domain HTH_23 PF13384.6 CQR55994.1 - 0.014 15.2 0.0 0.058 13.2 0.0 2.1 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 CQR55994.1 - 0.016 15.1 0.0 0.4 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain PuR_N PF09182.10 CQR55994.1 - 0.032 14.1 0.2 0.068 13.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal MarR_2 PF12802.7 CQR55994.1 - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family SpoIIID PF12116.8 CQR55994.1 - 0.13 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_7 PF02796.15 CQR55994.1 - 0.15 12.1 0.7 0.69 10.0 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase YmaF PF12788.7 CQR55995.1 - 9e-17 61.4 12.6 2.3e-12 47.3 7.7 2.3 1 1 1 2 2 2 2 YmaF family HTH_5 PF01022.20 CQR55996.1 - 1.8e-09 37.3 0.0 2.9e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR55996.1 - 4.1e-09 36.2 0.0 8.6e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 CQR55996.1 - 1.3e-08 34.7 0.0 2.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 CQR55996.1 - 1.7e-06 27.8 0.0 3.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR55996.1 - 3.7e-06 26.4 0.0 6.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 CQR55996.1 - 0.0016 18.8 0.0 0.0029 17.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 CQR55996.1 - 0.0022 18.2 0.0 0.0071 16.5 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 CQR55996.1 - 0.004 16.9 0.0 0.0094 15.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 CQR55996.1 - 0.0084 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 CQR55996.1 - 0.015 15.2 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 CQR55996.1 - 0.023 14.9 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 CQR55996.1 - 0.025 14.7 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 CQR55996.1 - 0.036 13.6 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_IclR PF09339.10 CQR55996.1 - 0.096 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF742 PF05331.11 CQR55996.1 - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_23 PF13384.6 CQR55996.1 - 0.16 11.8 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 CQR55996.1 - 0.19 11.3 0.1 0.52 9.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Glyco_hydro_43 PF04616.14 CQR55997.1 - 5.9e-78 262.1 2.3 7.4e-78 261.8 2.3 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR55997.1 - 6.7e-27 94.5 0.0 1.1e-26 93.8 0.0 1.3 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain Tic22 PF04278.12 CQR55997.1 - 0.25 10.7 0.0 0.42 10.0 0.0 1.3 1 0 0 1 1 1 0 Tic22-like family RNA_pol_Rpb8 PF03870.15 CQR55998.1 - 0.025 14.8 0.1 0.047 13.9 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb8 Response_reg PF00072.24 CQR55999.1 - 4.5e-14 52.6 0.1 8.1e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain LytTR PF04397.15 CQR55999.1 - 3.9e-13 49.5 0.2 7.2e-13 48.6 0.2 1.4 1 0 0 1 1 1 1 LytTr DNA-binding domain HATPase_c_5 PF14501.6 CQR56000.1 - 2.5e-29 101.1 1.8 3e-29 100.9 0.2 2.0 2 1 0 2 2 2 1 GHKL domain HATPase_c PF02518.26 CQR56000.1 - 0.002 18.6 0.2 0.0084 16.6 0.2 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KxDL PF10241.9 CQR56000.1 - 0.091 13.0 0.8 0.18 12.1 0.8 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein AbiJ_NTD5 PF18865.1 CQR56000.1 - 0.13 12.1 0.4 0.33 10.8 0.2 1.8 2 0 0 2 2 2 0 AbiJ N-terminal domain 5 Beta-lactamase PF00144.24 CQR56001.1 - 5e-61 206.8 0.1 7.9e-61 206.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase LUD_dom PF02589.15 CQR56001.1 - 0.046 13.4 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 LUD domain DUF1508 PF07411.12 CQR56001.1 - 0.13 12.2 0.9 21 5.1 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1508) SPA PF08616.10 CQR56002.1 - 0.031 14.2 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Stabilization of polarity axis GerA PF03323.13 CQR56003.1 - 2.6e-197 656.0 6.3 2.9e-197 655.8 6.3 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Spore_GerAC PF05504.11 CQR56004.1 - 9.5e-42 143.0 0.4 1.4e-41 142.4 0.4 1.3 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal Presenilin PF01080.17 CQR56005.1 - 0.051 12.3 1.2 0.058 12.2 1.2 1.0 1 0 0 1 1 1 0 Presenilin Spore_permease PF03845.13 CQR56006.1 - 1.4e-51 175.2 35.6 1.4e-51 175.2 35.6 1.5 2 0 0 2 2 2 1 Spore germination protein MFS_1 PF07690.16 CQR56007.1 - 4.2e-35 121.3 53.0 7.8e-29 100.7 23.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR56007.1 - 1.9e-20 72.8 22.5 2.2e-20 72.6 22.5 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR56007.1 - 4.4e-11 42.0 26.4 1e-06 27.6 6.7 2.7 2 1 1 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 CQR56007.1 - 0.001 18.0 19.3 0.016 14.1 19.3 2.1 1 1 0 1 1 1 1 MFS_1 like family SLH PF00395.20 CQR56008.1 - 9.2e-33 112.0 0.1 1.6e-11 44.0 0.0 3.9 3 0 0 3 3 3 3 S-layer homology domain Sortilin-Vps10 PF15902.5 CQR56008.1 - 1.7e-19 70.0 1.0 0.00054 18.9 0.0 6.0 2 2 4 7 7 7 6 Sortilin, neurotensin receptor 3, fn3 PF00041.21 CQR56008.1 - 3.8e-12 46.4 0.6 2.6e-06 27.7 0.0 3.9 3 1 0 3 3 3 2 Fibronectin type III domain BNR PF02012.20 CQR56008.1 - 1e-10 39.9 25.8 1.6 9.1 0.0 9.6 9 0 0 9 9 9 5 BNR/Asp-box repeat BNR_2 PF13088.6 CQR56008.1 - 2e-07 30.6 0.1 0.17 11.1 0.0 5.3 2 2 3 6 6 6 2 BNR repeat-like domain Big_2 PF02368.18 CQR56008.1 - 0.00019 21.3 2.8 0.00052 19.9 0.1 2.9 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 2) PSII_BNR PF14870.6 CQR56008.1 - 0.00031 20.1 8.7 0.51 9.6 0.1 6.3 4 2 2 6 6 6 1 Photosynthesis system II assembly factor YCF48 BNR_6 PF15899.5 CQR56008.1 - 0.0004 20.2 18.3 6.7 7.1 0.0 8.1 8 0 0 8 8 8 1 BNR-Asp box repeat Pur_ac_phosph_N PF16656.5 CQR56008.1 - 0.017 15.7 1.2 0.81 10.3 0.1 3.7 2 0 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain DUF2369 PF10179.9 CQR56008.1 - 0.017 15.5 0.0 0.27 11.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2369) fn3_2 PF16893.5 CQR56008.1 - 0.11 12.6 0.0 0.66 10.2 0.0 2.2 2 0 0 2 2 2 0 Fibronectin type III domain T2SS-T3SS_pil_N PF13629.6 CQR56008.1 - 0.15 11.8 0.0 0.41 10.4 0.0 1.8 1 0 0 1 1 1 0 Pilus formation protein N terminal region ABC_tran PF00005.27 CQR56010.1 - 3.5e-35 121.5 0.0 4.6e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56010.1 - 6.2e-12 45.9 0.1 1.2e-07 31.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56010.1 - 4.6e-10 39.3 0.1 3.7e-09 36.3 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR56010.1 - 0.00026 20.7 0.1 0.00046 19.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR56010.1 - 0.00043 20.7 0.1 0.00065 20.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATP_bind_1 PF03029.17 CQR56010.1 - 0.00055 19.8 0.0 0.0011 18.8 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 CQR56010.1 - 0.00076 19.3 0.0 0.75 9.4 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 CQR56010.1 - 0.00078 19.7 0.1 0.0043 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 CQR56010.1 - 0.0011 18.7 0.3 0.0036 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR56010.1 - 0.0012 18.8 0.1 0.0022 17.9 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 CQR56010.1 - 0.005 17.0 0.3 0.011 15.9 0.2 1.6 2 0 0 2 2 1 1 AAA domain ABC_ATPase PF09818.9 CQR56010.1 - 0.0063 15.4 0.1 8.9 5.0 0.0 2.9 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 CQR56010.1 - 0.014 14.0 0.0 0.1 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 CQR56010.1 - 0.015 15.2 0.0 0.042 13.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain ATPase_2 PF01637.18 CQR56010.1 - 0.019 14.9 0.0 0.045 13.7 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 CQR56010.1 - 0.023 15.2 0.2 0.054 14.0 0.1 1.7 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 CQR56010.1 - 0.025 14.2 0.1 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR56010.1 - 0.036 14.1 0.1 0.07 13.2 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 CQR56010.1 - 0.038 13.7 0.1 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 CQR56010.1 - 0.041 13.2 0.1 0.081 12.3 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 CQR56010.1 - 0.046 14.2 0.0 0.078 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain CobU PF02283.16 CQR56010.1 - 0.061 12.9 0.1 4.2 6.9 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_19 PF13245.6 CQR56010.1 - 0.075 13.4 0.3 0.15 12.3 0.3 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 CQR56010.1 - 0.078 12.2 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 CQR56010.1 - 0.085 13.3 0.2 2.8 8.4 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 CQR56010.1 - 0.086 12.5 0.3 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 CQR56010.1 - 0.12 12.4 0.3 0.23 11.5 0.1 1.6 2 0 0 2 2 1 0 Dynamin family Adeno_IVa2 PF02456.15 CQR56010.1 - 0.13 11.0 0.2 0.23 10.2 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_5 PF07728.14 CQR56010.1 - 0.14 12.1 0.2 0.75 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 CQR56010.1 - 0.16 11.5 0.1 0.35 10.4 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.18 CQR56010.1 - 0.18 11.5 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 CQR56010.1 - 0.2 12.0 0.0 0.52 10.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase BPD_transp_1 PF00528.22 CQR56011.1 - 2e-21 76.6 11.1 2e-21 76.6 11.1 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 CQR56012.1 - 4.6e-67 225.7 0.9 5.3e-67 225.5 0.9 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 CQR56012.1 - 0.00029 21.0 0.0 0.00062 20.0 0.0 1.5 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 CQR56012.1 - 0.0039 17.2 0.1 0.45 10.4 0.0 2.6 1 1 2 3 3 3 1 NMT1/THI5 like Phosphonate-bd PF12974.7 CQR56012.1 - 0.0055 16.3 0.0 0.015 14.9 0.0 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SHMT PF00464.19 CQR56012.1 - 0.076 11.6 0.0 0.1 11.1 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DSX_dimer PF08828.10 CQR56013.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR56013.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR56014.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR56014.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR56014.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR56014.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) LysR_substrate PF03466.20 CQR56015.1 - 7.5e-45 152.9 0.2 1.1e-44 152.4 0.2 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR56015.1 - 2.3e-20 72.3 0.9 6.8e-20 70.8 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 CQR56015.1 - 0.0049 16.0 0.0 0.053 12.6 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_3 PF00497.20 CQR56015.1 - 0.0069 15.8 0.0 0.22 10.9 0.0 2.3 1 1 2 3 3 3 3 Bacterial extracellular solute-binding proteins, family 3 MarR_2 PF12802.7 CQR56015.1 - 0.017 15.0 0.1 0.05 13.5 0.1 1.9 1 0 0 1 1 1 0 MarR family HTH_30 PF13556.6 CQR56015.1 - 0.06 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain PBP_like_2 PF12849.7 CQR56015.1 - 0.12 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain MFS_1 PF07690.16 CQR56016.1 - 1.1e-51 175.9 47.6 1.1e-51 175.9 47.6 2.3 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR56016.1 - 1.3e-10 40.7 31.3 2.2e-05 23.5 10.4 3.0 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 CQR56016.1 - 4.7e-05 22.1 8.6 4.7e-05 22.1 8.6 2.7 2 1 1 3 3 3 2 MFS/sugar transport protein TRI12 PF06609.13 CQR56016.1 - 0.4 9.0 20.3 0.015 13.8 12.2 2.0 1 1 1 2 2 2 0 Fungal trichothecene efflux pump (TRI12) adh_short PF00106.25 CQR56018.1 - 4.3e-41 140.5 0.0 5.4e-41 140.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR56018.1 - 1.5e-34 119.6 0.0 4e-34 118.2 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR56018.1 - 1.1e-06 28.7 0.0 1.4e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR56018.1 - 7e-05 22.4 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 CQR56018.1 - 0.044 13.8 0.1 0.084 12.9 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Wax2_C PF12076.8 CQR56018.1 - 0.14 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 WAX2 C-terminal domain Arabinose_bd PF12625.7 CQR56019.1 - 2.9e-22 79.7 0.2 5.1e-22 78.9 0.2 1.4 1 0 0 1 1 1 1 Arabinose-binding domain of AraC transcription regulator, N-term HTH_18 PF12833.7 CQR56019.1 - 5.8e-21 74.6 0.1 1.8e-20 72.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56019.1 - 1.7e-08 34.4 0.0 3.3e-06 27.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_Tnp_ISL3 PF13542.6 CQR56019.1 - 0.00042 19.7 0.1 0.0017 17.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.19 CQR56019.1 - 0.0012 18.6 0.0 0.0043 16.8 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 CQR56019.1 - 0.0013 18.5 0.1 0.9 9.4 0.1 2.6 2 0 0 2 2 2 2 PucR C-terminal helix-turn-helix domain HTH_Mga PF08280.11 CQR56019.1 - 0.0075 16.3 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_10 PF04967.12 CQR56019.1 - 0.048 13.5 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.6 CQR56019.1 - 0.065 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 CQR56019.1 - 0.092 12.6 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain PHP PF02811.19 CQR56020.1 - 0.0016 18.8 0.2 0.0034 17.7 0.2 1.5 1 1 0 1 1 1 1 PHP domain Metallophos PF00149.28 CQR56021.1 - 6.5e-15 56.2 0.0 8.6e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR56021.1 - 2.1e-06 28.0 0.1 5.5e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain PhoD PF09423.10 CQR56021.1 - 0.14 11.1 0.0 0.3 10.1 0.0 1.5 2 0 0 2 2 2 0 PhoD-like phosphatase DeoRC PF00455.22 CQR56022.1 - 3.9e-47 160.2 0.2 5.6e-47 159.6 0.2 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 CQR56022.1 - 9e-18 63.8 0.5 2.2e-17 62.5 0.5 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR56022.1 - 2.6e-08 33.7 0.5 5.4e-08 32.7 0.5 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 CQR56022.1 - 0.0023 17.5 1.1 0.006 16.2 1.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 CQR56022.1 - 0.014 15.3 0.3 0.048 13.6 0.2 1.9 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 CQR56022.1 - 0.042 13.7 0.2 0.16 11.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Put_DNA-bind_N PF06971.13 CQR56022.1 - 0.091 12.8 0.1 0.26 11.3 0.1 1.8 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Mga PF05043.13 CQR56022.1 - 0.16 12.6 0.1 0.33 11.6 0.1 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain YwiC PF14256.6 CQR56023.1 - 1.3e-41 141.8 16.8 3.4e-40 137.2 8.7 2.2 2 0 0 2 2 2 2 YwiC-like protein PMP22_Claudin PF00822.20 CQR56023.1 - 0.026 14.4 0.2 0.049 13.5 0.2 1.5 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family DUF2157 PF09925.9 CQR56023.1 - 2.8 7.7 8.7 2.2 8.1 0.3 2.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) Glyco_hydro_1 PF00232.18 CQR56024.1 - 0.0059 15.1 0.0 0.0084 14.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 1 APH PF01636.23 CQR56025.1 - 3.4e-25 89.4 0.2 4.2e-25 89.1 0.2 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Mob_synth_C PF06463.13 CQR56027.1 - 5.6e-38 129.8 0.0 7.9e-38 129.3 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 CQR56027.1 - 5.3e-26 92.0 0.0 8.2e-26 91.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR56027.1 - 4.5e-06 27.0 0.0 1.1e-05 25.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR56027.1 - 1.4e-05 25.2 0.0 3.4e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_40 PF14493.6 CQR56027.1 - 0.095 13.2 0.0 0.23 11.9 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain C1_2 PF03107.16 CQR56027.1 - 0.3 11.5 3.5 4.2 7.8 0.4 2.3 2 0 0 2 2 2 0 C1 domain MFS_1 PF07690.16 CQR56028.1 - 4.2e-39 134.5 45.8 4.2e-39 134.5 45.8 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily PAS_9 PF13426.7 CQR56028.1 - 2.9e-16 59.6 0.0 4.6e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 CQR56028.1 - 9e-12 45.0 0.0 1.4e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 CQR56028.1 - 7.4e-08 32.6 0.0 1.1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 CQR56028.1 - 2.8e-06 27.2 0.0 5.7e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 CQR56028.1 - 3e-05 24.2 0.0 4.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 PAS fold LacY_symp PF01306.19 CQR56028.1 - 1.6 7.4 35.1 0.014 14.2 17.6 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter Response_reg PF00072.24 CQR56029.1 - 1.9e-25 89.2 0.1 3.6e-25 88.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR56029.1 - 1.2e-22 79.1 0.1 2.1e-22 78.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR56029.1 - 1e-05 25.1 0.1 1.8e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR56029.1 - 0.0046 16.7 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Thi4 PF01946.17 CQR56029.1 - 0.013 14.8 0.1 0.098 11.9 0.1 2.0 1 1 1 2 2 2 0 Thi4 family Sigma70_r4 PF04545.16 CQR56029.1 - 0.029 13.9 0.1 0.056 13.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR56029.1 - 0.031 14.2 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor HTH_24 PF13412.6 CQR56029.1 - 0.05 13.2 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.12 CQR56029.1 - 0.082 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 CQR56029.1 - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 CQR56029.1 - 0.16 12.0 0.1 0.47 10.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HisKA_3 PF07730.13 CQR56030.1 - 8.6e-14 51.8 2.0 1.6e-13 51.0 2.0 1.5 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR56030.1 - 2e-08 34.7 0.2 8.2e-08 32.7 0.1 2.1 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR56030.1 - 0.00019 21.4 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3510 PF12022.8 CQR56030.1 - 0.0017 18.7 1.0 0.0034 17.8 1.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3510) PAS_8 PF13188.7 CQR56030.1 - 0.0057 16.6 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 CQR56030.1 - 0.03 14.6 0.0 0.084 13.1 0.0 1.7 2 0 0 2 2 2 0 PAS fold FAM216B PF15107.6 CQR56030.1 - 0.038 13.9 0.0 0.098 12.5 0.0 1.7 1 0 0 1 1 1 0 FAM216B protein family Cep57_CLD_2 PF14197.6 CQR56030.1 - 0.053 13.6 0.5 0.14 12.3 0.5 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 PAS_9 PF13426.7 CQR56030.1 - 0.13 12.5 0.0 0.39 11.0 0.0 1.9 1 1 0 1 1 1 0 PAS domain GAF_2 PF13185.6 CQR56031.1 - 2.2e-07 31.3 0.0 2.6e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 CQR56031.1 - 0.00024 21.8 0.0 0.00031 21.4 0.0 1.1 1 0 0 1 1 1 1 GAF domain Nitrate_red_gam PF02665.14 CQR56032.1 - 1.2e-87 293.0 9.4 1.4e-87 292.9 9.4 1.0 1 0 0 1 1 1 1 Nitrate reductase gamma subunit MFS_MOT1 PF16983.5 CQR56032.1 - 0.023 15.1 0.3 0.042 14.2 0.3 1.5 1 0 0 1 1 1 0 Molybdate transporter of MFS superfamily DUF3397 PF11877.8 CQR56032.1 - 0.047 13.9 6.3 0.24 11.6 0.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3397) Nitrate_red_del PF02613.15 CQR56033.1 - 3e-07 30.5 2.1 4.4e-07 30.0 2.1 1.4 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.6 CQR56034.1 - 9.6e-37 125.1 6.8 9.6e-37 125.1 6.8 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.6 CQR56034.1 - 5.6e-28 96.5 0.2 1e-27 95.6 0.2 1.5 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_10 PF13237.6 CQR56034.1 - 1.2e-06 28.5 22.1 9.7e-05 22.4 6.2 3.8 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 CQR56034.1 - 6.9e-05 23.4 26.0 0.0049 17.4 7.3 3.9 3 1 2 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR56034.1 - 0.00034 20.6 22.4 0.019 15.0 0.1 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 CQR56034.1 - 0.0007 19.7 22.8 0.044 13.9 0.7 3.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 CQR56034.1 - 0.012 15.7 2.2 0.012 15.7 2.2 4.8 6 0 0 6 6 4 0 4Fe-4S binding domain Fer4 PF00037.27 CQR56034.1 - 0.024 14.5 2.2 0.024 14.5 2.2 5.1 6 0 0 6 6 5 0 4Fe-4S binding domain SUKH_5 PF14567.6 CQR56034.1 - 0.082 12.6 0.0 0.68 9.7 0.0 2.3 2 0 0 2 2 2 0 SMI1-KNR4 cell-wall Fer4_17 PF13534.6 CQR56034.1 - 0.14 12.7 18.8 0.65 10.6 0.2 4.5 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 CQR56034.1 - 0.2 12.1 0.1 0.2 12.1 0.1 3.9 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 CQR56034.1 - 0.25 11.9 0.2 0.25 11.9 0.2 3.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 CQR56034.1 - 0.43 10.7 22.2 0.058 13.5 1.7 3.1 3 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 CQR56034.1 - 4.2 8.4 15.0 17 6.5 0.1 3.7 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 CQR56034.1 - 8.9 7.1 26.6 2.4 8.9 2.1 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Molybdopterin PF00384.22 CQR56035.1 - 7.6e-152 506.2 0.0 9.7e-152 505.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 CQR56035.1 - 2.8e-22 78.9 0.3 5.6e-22 77.9 0.3 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Nitr_red_alph_N PF14710.6 CQR56035.1 - 2.3e-11 43.9 1.9 1.1e-10 41.8 1.9 2.2 1 0 0 1 1 1 1 Respiratory nitrate reductase alpha N-terminal Molybdop_Fe4S4 PF04879.16 CQR56035.1 - 0.21 11.6 0.1 0.46 10.5 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Hemerythrin PF01814.23 CQR56036.1 - 4.8e-07 30.5 9.6 7.1e-07 29.9 9.6 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain NPV_P10 PF05531.12 CQR56036.1 - 0.051 14.0 0.1 0.11 13.0 0.1 1.5 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Rrf2 PF02082.20 CQR56037.1 - 6e-23 81.0 0.2 8.3e-23 80.5 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 CQR56037.1 - 0.0013 18.6 0.0 0.0034 17.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_46 PF15977.5 CQR56037.1 - 0.002 18.1 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA binding HTH_6 PF01418.17 CQR56037.1 - 0.01 15.8 0.1 0.026 14.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family PuR_N PF09182.10 CQR56037.1 - 0.1 12.5 0.7 0.26 11.3 0.7 1.7 1 1 0 1 1 1 0 Bacterial purine repressor, N-terminal NAD_binding_1 PF00175.21 CQR56038.1 - 7.7e-12 45.8 0.0 2.1e-11 44.4 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 CQR56038.1 - 2.4e-11 43.8 0.0 4.3e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Globin PF00042.22 CQR56038.1 - 1.6e-07 31.9 0.2 3.5e-07 30.8 0.2 1.6 1 0 0 1 1 1 1 Globin NAD_binding_6 PF08030.12 CQR56038.1 - 0.0053 16.9 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 Ferric reductase NAD binding domain cNMP_binding PF00027.29 CQR56039.1 - 7.3e-21 74.1 0.0 1e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR56039.1 - 2.1e-17 62.9 0.1 4e-17 61.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 CQR56039.1 - 8.1e-09 35.0 0.0 1.4e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_11 PF08279.12 CQR56039.1 - 0.0072 16.2 0.0 0.023 14.7 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_3 PF01381.22 CQR56039.1 - 0.05 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Phage_rep_org_N PF09681.10 CQR56039.1 - 0.059 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MarR_2 PF12802.7 CQR56039.1 - 0.13 12.1 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Rubredoxin PF00301.20 CQR56040.1 - 8.1e-23 80.2 5.1 8.8e-23 80.1 5.1 1.0 1 0 0 1 1 1 1 Rubredoxin ADK_lid PF05191.14 CQR56040.1 - 0.0016 18.4 0.6 0.0034 17.3 0.6 1.5 1 1 0 1 1 1 1 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 CQR56040.1 - 0.0038 17.3 2.1 0.034 14.3 2.1 2.0 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 CQR56040.1 - 0.0055 16.2 1.0 2.5 7.7 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Rubredoxin_2 PF18073.1 CQR56040.1 - 0.0059 16.3 2.5 1.2 8.9 0.1 2.1 2 0 0 2 2 2 2 Rubredoxin metal binding domain PHD_4 PF16866.5 CQR56040.1 - 0.0095 16.0 0.4 0.013 15.6 0.4 1.3 1 1 0 1 1 1 1 PHD-finger Nudix_N_2 PF14803.6 CQR56040.1 - 0.029 14.3 1.3 4.1 7.4 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal C1_2 PF03107.16 CQR56040.1 - 0.039 14.3 1.2 4.8 7.6 0.0 2.1 2 0 0 2 2 2 0 C1 domain Vps36-NZF-N PF16988.5 CQR56040.1 - 0.045 13.1 0.3 0.2 11.1 0.0 1.9 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain A2L_zn_ribbon PF08792.10 CQR56040.1 - 0.087 12.6 1.7 6.1 6.7 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RanBP PF00641.18 CQR56040.1 - 0.088 12.1 0.2 0.088 12.1 0.2 1.7 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-NADH-PPase PF09297.11 CQR56040.1 - 0.12 12.1 1.4 11 5.7 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 CQR56040.1 - 0.16 11.9 0.1 14 5.7 0.0 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 CQR56040.1 - 0.28 11.7 2.1 17 6.0 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Zn_ribbon_SprT PF17283.2 CQR56040.1 - 0.36 10.8 2.2 0.88 9.5 0.1 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Pyr_redox_2 PF07992.14 CQR56041.1 - 1.2e-60 205.2 3.4 1.6e-60 204.9 3.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR56041.1 - 1.3e-23 83.4 7.0 6.1e-20 71.6 1.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR56041.1 - 6.2e-14 52.0 1.6 8e-14 51.6 0.4 1.7 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR56041.1 - 3e-11 43.5 10.4 7.4e-06 25.8 0.5 3.5 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR56041.1 - 7.7e-10 38.0 5.5 0.017 13.9 0.1 3.8 4 1 1 5 5 5 3 HI0933-like protein Rubredoxin_C PF18267.1 CQR56041.1 - 1.2e-09 37.9 0.0 4.5e-09 36.1 0.0 2.1 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain NAD_binding_8 PF13450.6 CQR56041.1 - 1.2e-08 35.0 0.1 2.5e-05 24.4 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 CQR56041.1 - 9e-07 29.0 7.5 0.41 10.6 0.2 4.2 3 1 1 4 4 4 3 FAD-NAD(P)-binding K_oxygenase PF13434.6 CQR56041.1 - 1.1e-06 28.0 0.1 0.00019 20.7 0.0 2.3 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.24 CQR56041.1 - 1.3e-05 24.6 4.7 0.068 12.4 0.2 3.0 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 CQR56041.1 - 6.6e-05 22.3 3.9 0.0024 17.2 2.2 2.6 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 CQR56041.1 - 6.9e-05 22.1 4.3 0.17 10.9 0.2 3.5 2 2 2 4 4 4 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 CQR56041.1 - 0.0001 21.5 5.9 0.0019 17.3 0.2 3.6 4 1 1 5 5 5 1 FAD binding domain FAD_binding_3 PF01494.19 CQR56041.1 - 0.00037 19.8 0.2 0.00065 19.0 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 CQR56041.1 - 0.00063 18.9 16.4 0.0084 15.2 1.2 3.8 2 1 2 4 4 4 3 Glucose inhibited division protein A NAD_binding_7 PF13241.6 CQR56041.1 - 0.0014 19.0 0.2 0.04 14.4 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding Trp_halogenase PF04820.14 CQR56041.1 - 0.0038 16.1 3.1 0.21 10.4 0.5 3.0 3 0 0 3 3 3 1 Tryptophan halogenase 3HCDH_N PF02737.18 CQR56041.1 - 0.0062 16.4 0.3 0.012 15.6 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 CQR56041.1 - 0.0066 15.7 3.6 3.4 6.8 0.2 3.3 2 1 1 3 3 3 1 Thi4 family IlvN PF07991.12 CQR56041.1 - 0.012 15.2 0.2 0.047 13.2 0.1 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 CQR56041.1 - 0.042 13.5 0.1 0.089 12.4 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 CQR56041.1 - 0.047 13.3 0.2 0.09 12.3 0.2 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.7 CQR56041.1 - 0.1 11.9 10.0 1 8.7 0.8 3.6 4 0 0 4 4 4 0 FAD dependent oxidoreductase DpaA_N PF16924.5 CQR56041.1 - 0.12 12.4 0.8 0.69 10.0 0.1 2.4 2 1 1 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain TrkA_N PF02254.18 CQR56041.1 - 0.14 12.5 1.3 0.41 10.9 0.1 2.4 3 1 0 3 3 2 0 TrkA-N domain Lactamase_B PF00753.27 CQR56042.1 - 1.4e-09 38.2 0.1 2.2e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 CQR56042.1 - 5.5e-05 23.4 0.0 9.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 CQR56042.1 - 6.4e-05 23.2 0.1 0.00011 22.5 0.1 1.4 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 CQR56042.1 - 0.00031 20.5 0.3 0.00067 19.4 0.3 1.6 1 0 0 1 1 1 1 Flavodoxin domain Lactamase_B_2 PF12706.7 CQR56042.1 - 0.0022 17.6 0.1 0.0039 16.7 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FMN_red PF03358.15 CQR56042.1 - 0.0052 16.5 0.1 0.015 15.0 0.1 1.8 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Cas_APE2256 PF09651.10 CQR56042.1 - 0.09 12.7 0.1 0.25 11.2 0.1 1.7 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) WYL PF13280.6 CQR56043.1 - 1.8e-39 135.5 0.9 2.7e-39 135.0 0.9 1.3 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR56043.1 - 2e-13 50.1 0.1 1.2e-12 47.6 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 CQR56043.1 - 1.8e-05 24.4 0.0 4.1e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 CQR56043.1 - 0.022 14.8 1.4 0.22 11.6 0.1 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain Glyco_hydro_85 PF03644.13 CQR56044.1 - 6.2e-56 190.0 9.1 9.4e-56 189.4 9.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 85 Y1_Tnp PF01797.16 CQR56045.1 - 1.8e-38 131.4 1.3 2.1e-38 131.1 1.3 1.1 1 0 0 1 1 1 1 Transposase IS200 like YjbR PF04237.13 CQR56046.1 - 4.6e-26 91.2 0.0 5.5e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 YjbR polyprenyl_synt PF00348.17 CQR56047.1 - 1.7e-48 164.9 2.1 6.3e-46 156.5 0.1 3.1 3 0 0 3 3 3 2 Polyprenyl synthetase AvrM-A PF18241.1 CQR56047.1 - 0.26 11.7 1.6 0.55 10.6 0.0 2.3 2 1 0 3 3 3 0 Flax-rust effector AvrM-A Acetyltransf_1 PF00583.25 CQR56048.1 - 6.3e-07 29.7 0.0 0.007 16.6 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR56048.1 - 1.8e-06 28.3 0.0 4e-06 27.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR56048.1 - 0.00025 21.0 0.0 0.00076 19.4 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56048.1 - 0.11 12.4 0.0 0.26 11.3 0.0 1.6 1 1 0 1 1 1 0 FR47-like protein MerR_1 PF13411.6 CQR56050.1 - 8.3e-19 67.5 0.2 1.3e-18 66.9 0.2 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR56050.1 - 2.4e-12 46.4 0.0 3.6e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR56050.1 - 1.3e-08 35.3 0.2 3.3e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 MerR, DNA binding Fib_alpha PF08702.10 CQR56050.1 - 0.073 13.3 1.7 0.11 12.6 1.7 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family PaaX_C PF08223.11 CQR56050.1 - 0.12 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain Epimerase PF01370.21 CQR56051.1 - 3.6e-13 49.5 0.6 2.2e-09 37.2 0.2 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR56051.1 - 1.6e-10 41.2 4.1 5.1e-10 39.5 4.1 1.9 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR56051.1 - 3.7e-10 39.8 0.8 1.2e-09 38.1 0.8 1.8 1 1 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 CQR56051.1 - 7.1e-05 22.4 0.1 0.00013 21.5 0.1 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase TrkA_N PF02254.18 CQR56051.1 - 0.00013 22.2 0.3 0.0015 18.7 0.1 2.3 1 1 0 2 2 2 1 TrkA-N domain 3Beta_HSD PF01073.19 CQR56051.1 - 0.00037 19.6 0.1 0.0044 16.1 0.0 2.0 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 CQR56051.1 - 0.00071 18.8 0.0 0.031 13.4 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 CQR56051.1 - 0.0019 17.4 0.7 0.0027 16.9 0.1 1.5 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.25 CQR56051.1 - 0.0037 16.7 0.5 0.0065 15.9 0.5 1.5 1 0 0 1 1 1 1 short chain dehydrogenase ADH_zinc_N PF00107.26 CQR56051.1 - 0.014 15.4 1.6 0.064 13.2 1.1 2.4 2 1 0 2 2 2 0 Zinc-binding dehydrogenase F420_oxidored PF03807.17 CQR56051.1 - 0.043 14.4 0.4 0.11 13.1 0.1 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 CQR56051.1 - 0.07 13.6 0.1 0.12 12.9 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DinB PF05163.12 CQR56052.1 - 2.5e-24 86.1 0.0 2.9e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 DinB family DinB_2 PF12867.7 CQR56052.1 - 3.6e-12 46.9 0.0 4.5e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR56052.1 - 0.0046 17.4 0.0 0.018 15.4 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF664) Amidohydro_1 PF01979.20 CQR56053.1 - 1.6e-28 100.0 0.4 2.1e-28 99.6 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR56053.1 - 1.1e-14 54.8 9.0 7.3e-14 52.1 4.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family Aminotran_5 PF00266.19 CQR56054.1 - 1.7e-24 86.4 0.0 2.4e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V ABC_tran PF00005.27 CQR56055.1 - 7.8e-35 120.4 0.1 1e-34 120.0 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR56055.1 - 2.2e-06 27.3 0.1 4.4e-06 26.3 0.1 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR56055.1 - 6.4e-06 26.2 5.2 0.0077 16.1 1.2 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 CQR56055.1 - 0.00045 20.7 0.0 0.0011 19.4 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.6 CQR56055.1 - 0.00076 19.2 0.1 0.0013 18.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 CQR56055.1 - 0.0015 19.0 0.1 0.011 16.2 0.0 2.1 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR56055.1 - 0.0021 18.5 0.8 0.0033 17.8 0.8 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR56055.1 - 0.0025 17.8 0.1 0.0043 17.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 CQR56055.1 - 0.0084 15.9 0.0 0.021 14.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 CQR56055.1 - 0.016 14.6 0.1 0.041 13.3 0.1 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 CQR56055.1 - 0.018 15.3 2.5 0.21 11.9 2.5 2.3 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 CQR56055.1 - 0.019 15.1 1.2 0.03 14.4 0.2 1.8 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_33 PF13671.6 CQR56055.1 - 0.019 15.1 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR56055.1 - 0.023 14.6 0.4 0.043 13.7 0.3 1.7 1 1 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 CQR56055.1 - 0.026 14.5 0.1 0.048 13.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 CQR56055.1 - 0.044 13.0 0.0 0.049 12.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Zeta_toxin PF06414.12 CQR56055.1 - 0.08 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 CQR56055.1 - 0.082 12.6 0.0 0.18 11.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR56055.1 - 0.14 11.3 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 CQR56055.1 - 0.16 12.4 0.2 0.37 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 CQR56056.1 - 4.3e-25 88.8 0.0 6.7e-25 88.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56056.1 - 2.5e-08 34.1 0.4 0.00017 21.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56056.1 - 1.3e-05 25.4 0.0 2.2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR56056.1 - 1.9e-05 24.2 0.2 0.00019 21.0 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain oligo_HPY PF08352.12 CQR56056.1 - 0.00019 21.9 0.0 0.00038 20.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region TniB PF05621.11 CQR56056.1 - 0.001 18.5 0.3 0.0095 15.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 CQR56056.1 - 0.0055 17.1 0.1 0.0083 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR56056.1 - 0.023 14.5 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 CQR56056.1 - 0.07 12.5 0.1 0.39 10.1 0.0 2.1 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 CQR56056.1 - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 CQR56057.1 - 9.6e-19 67.8 15.9 9.6e-19 67.8 15.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR56057.1 - 6.3e-06 26.1 1.2 6.3e-06 26.1 1.2 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 CQR56058.1 - 2.8e-32 111.9 13.7 2.8e-32 111.9 13.7 2.5 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Orf78 PF06024.12 CQR56058.1 - 0.19 12.1 2.1 4.6 7.6 0.0 2.8 3 0 0 3 3 3 0 Orf78 (ac78) TPPK_C PF12555.8 CQR56058.1 - 0.29 11.2 7.0 3.9 7.6 2.5 2.8 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF4577 PF15145.6 CQR56058.1 - 0.71 9.9 0.0 0.71 9.9 0.0 3.3 3 1 0 4 4 4 0 Domain of unknown function (DUF4577) DUF5383 PF17355.2 CQR56058.1 - 9.5 6.6 7.2 16 5.9 0.1 2.9 3 0 0 3 3 3 0 Family of unknown function (DUF5383) SBP_bac_5 PF00496.22 CQR56059.1 - 4.7e-86 289.1 2.4 5.8e-86 288.8 2.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4197 PF13852.6 CQR56059.1 - 0.07 12.8 0.1 0.23 11.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4197) Hydrolase_3 PF08282.12 CQR56060.1 - 7.1e-59 199.6 0.0 8.1e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR56060.1 - 6.2e-13 48.8 0.0 4.6e-08 32.9 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 CQR56060.1 - 2.4e-10 41.0 0.5 6e-05 23.4 0.0 3.3 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR56060.1 - 3.6e-06 27.5 0.0 0.0055 17.1 0.0 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 CQR56060.1 - 0.0023 18.0 0.2 0.15 12.1 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF4248 PF14053.6 CQR56060.1 - 0.017 15.2 0.1 2.7 8.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4248) DUF2150 PF09920.9 CQR56060.1 - 0.023 14.7 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) MarR PF01047.22 CQR56061.1 - 4.1e-09 36.2 0.0 1.1e-08 34.9 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR56061.1 - 8.9e-08 31.9 0.0 3.6e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 MarR family B-block_TFIIIC PF04182.12 CQR56061.1 - 7.3e-07 29.3 0.8 9.2e-07 28.9 0.1 1.5 2 0 0 2 2 1 1 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.19 CQR56061.1 - 4.7e-05 23.5 0.0 0.00011 22.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RNA_pol_Rpc34 PF05158.12 CQR56061.1 - 8.6e-05 22.1 0.1 0.00012 21.5 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit TrmB PF01978.19 CQR56061.1 - 0.00016 21.5 0.4 0.00086 19.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 CQR56061.1 - 0.0012 19.2 0.2 0.0061 17.0 0.1 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_36 PF13730.6 CQR56061.1 - 0.0018 18.2 0.1 0.0039 17.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 CQR56061.1 - 0.0025 17.7 0.2 0.0048 16.8 0.2 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FeoC PF09012.10 CQR56061.1 - 0.0026 17.8 0.1 0.0041 17.2 0.1 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.6 CQR56061.1 - 0.01 15.4 0.0 0.043 13.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 CQR56061.1 - 0.014 15.7 0.8 0.058 13.7 0.7 1.9 1 1 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.16 CQR56061.1 - 0.019 14.7 0.4 0.17 11.7 0.1 2.7 1 1 2 3 3 3 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 CQR56061.1 - 0.021 14.8 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 CQR56061.1 - 0.033 14.0 0.0 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rrf2 PF02082.20 CQR56061.1 - 0.045 14.1 0.0 0.086 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_37 PF13744.6 CQR56061.1 - 0.047 13.6 0.2 0.1 12.6 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Acetyltransf_19 PF18015.1 CQR56061.1 - 0.07 13.4 0.4 0.45 10.7 0.0 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Replic_Relax PF13814.6 CQR56061.1 - 0.094 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation PvlArgDC PF01862.16 CQR56061.1 - 0.12 12.2 0.4 0.16 11.8 0.4 1.3 1 1 0 1 1 1 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) TackOD1 PF18551.1 CQR56061.1 - 0.13 11.9 0.1 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Peptidase_M4_C PF02868.15 CQR56062.1 - 5.9e-57 192.2 0.4 1.2e-56 191.2 0.4 1.6 1 0 0 1 1 1 1 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4 PF01447.18 CQR56062.1 - 2.2e-49 167.7 5.7 2.2e-49 167.7 5.7 2.3 3 0 0 3 3 3 1 Thermolysin metallopeptidase, catalytic domain FTP PF07504.13 CQR56062.1 - 2e-14 53.1 0.8 2e-14 53.1 0.8 2.7 3 0 0 3 3 3 1 Fungalysin/Thermolysin Propeptide Motif PepSY PF03413.19 CQR56062.1 - 0.00099 19.6 0.3 0.0027 18.2 0.3 1.8 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain ABC2_membrane_5 PF13346.6 CQR56064.1 - 5.5e-27 94.7 18.3 6.3e-27 94.5 18.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein Phage_holin_1 PF04531.13 CQR56064.1 - 0.13 12.8 1.9 0.35 11.4 0.3 2.4 2 1 0 2 2 2 0 Bacteriophage holin ABC2_membrane_3 PF12698.7 CQR56064.1 - 0.47 9.5 20.3 0.015 14.5 13.5 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein Flp1_like PF16982.5 CQR56064.1 - 0.69 9.3 3.1 0.82 9.1 0.1 2.1 2 0 0 2 2 2 0 Putative Flagellin, Flp1-like, domain ABC2_membrane_2 PF12679.7 CQR56064.1 - 2 7.6 20.8 2.1 7.5 16.3 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 CQR56065.1 - 2e-26 93.1 0.0 4.9e-26 91.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR56065.1 - 7.7e-17 62.0 0.4 1.3e-09 38.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR56065.1 - 1.3e-05 25.1 3.3 0.0034 17.1 0.8 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 CQR56065.1 - 4e-05 24.2 0.3 7.3e-05 23.4 0.3 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR56065.1 - 0.00055 19.4 0.9 0.13 11.7 0.2 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR56065.1 - 0.0064 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 CQR56065.1 - 0.041 12.7 1.2 1.5 7.5 0.4 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 CQR56065.1 - 0.044 14.2 0.0 0.18 12.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 CQR56065.1 - 0.045 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 CQR56065.1 - 0.053 13.8 0.5 0.28 11.5 0.5 2.0 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 CQR56065.1 - 0.11 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase GntR PF00392.21 CQR56066.1 - 8.2e-16 57.4 0.4 1.6e-15 56.5 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 CQR56066.1 - 1.4e-05 24.6 0.1 0.00015 21.3 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 CQR56066.1 - 0.0034 17.7 0.1 0.0059 16.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 CQR56066.1 - 0.0051 16.8 0.9 0.045 13.7 0.1 2.2 1 1 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 CQR56066.1 - 0.0075 16.2 0.2 0.035 14.0 0.0 2.1 3 0 0 3 3 3 1 MarR family HTH_41 PF14502.6 CQR56066.1 - 0.0098 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 CQR56066.1 - 0.022 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 CQR56066.1 - 0.023 15.4 0.1 0.14 12.9 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal MarR_2 PF12802.7 CQR56066.1 - 0.12 12.3 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 MarR family ANT PF03374.14 CQR56066.1 - 0.15 12.4 0.0 0.32 11.3 0.0 1.5 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain Sigma70_r4_2 PF08281.12 CQR56066.1 - 0.22 11.2 3.6 1.7 8.3 0.6 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Glyco_hydro_4C PF11975.8 CQR56067.1 - 2.5e-71 240.0 0.8 3.4e-71 239.6 0.8 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 CQR56067.1 - 9e-62 207.9 0.0 2.1e-61 206.7 0.1 1.6 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase Ldh_1_N PF00056.23 CQR56067.1 - 0.0028 17.8 0.0 0.13 12.3 0.0 2.4 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain HTH_18 PF12833.7 CQR56068.1 - 7e-24 83.9 0.3 1.2e-23 83.1 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56068.1 - 5.1e-23 80.6 1.8 1.4e-10 41.0 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR56068.1 - 8.4e-18 64.6 0.2 1.9e-17 63.4 0.2 1.7 2 0 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR56068.1 - 0.02 14.6 0.1 0.044 13.5 0.1 1.5 1 0 0 1 1 1 0 Cupin domain AraC_binding_2 PF14525.6 CQR56068.1 - 0.083 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AraC-binding-like domain SNARE_assoc PF09335.11 CQR56069.1 - 4.6e-24 85.2 4.7 4.6e-24 85.2 4.7 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein CcmD PF04995.14 CQR56069.1 - 0.0052 16.8 0.2 0.019 15.0 0.2 2.0 1 0 0 1 1 1 1 Heme exporter protein D (CcmD) MscS_TM PF12794.7 CQR56069.1 - 0.82 8.5 5.2 0.39 9.5 0.5 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 ArlS_N PF18719.1 CQR56070.1 - 6.2e-34 117.0 0.8 6.2e-34 117.0 0.8 1.6 2 0 0 2 2 2 1 ArlS sensor domain HATPase_c PF02518.26 CQR56070.1 - 5.2e-26 91.4 0.0 1.3e-25 90.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56070.1 - 7.2e-15 54.8 0.7 1.7e-14 53.6 0.3 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR56070.1 - 1.2e-11 44.8 1.4 2.6e-11 43.7 0.3 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_5 PF14501.6 CQR56070.1 - 0.00018 21.3 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 CQR56070.1 - 0.0081 16.0 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR56071.1 - 4.2e-27 94.5 0.5 9.2e-27 93.4 0.0 1.7 2 1 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56071.1 - 2.3e-25 88.5 0.7 5.4e-25 87.3 0.0 2.0 3 0 0 3 3 3 1 Transcriptional regulatory protein, C terminal PDDEXK_2 PF12784.7 CQR56072.1 - 7.4e-70 235.0 0.8 8.9e-70 234.8 0.8 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase GrpB PF04229.14 CQR56074.1 - 2.9e-47 160.8 0.0 3.3e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 GrpB protein GNAT_acetyltran PF12746.7 CQR56076.1 - 1.4e-08 34.7 0.0 3e-08 33.6 0.0 1.4 1 1 0 1 1 1 1 GNAT acetyltransferase FR47 PF08445.10 CQR56076.1 - 1.8e-07 31.0 0.0 3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 CQR56076.1 - 6.4e-06 26.4 0.0 1.1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 CQR56076.1 - 0.068 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 CQR56076.1 - 0.09 13.5 0.0 0.21 12.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4190 PF13828.6 CQR56077.1 - 2.8e-17 62.2 10.9 2.8e-17 62.2 10.9 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4190) Ammonium_transp PF00909.21 CQR56077.1 - 0.013 14.3 3.6 0.014 14.1 3.6 1.1 1 0 0 1 1 1 0 Ammonium Transporter Family SLAC1 PF03595.17 CQR56077.1 - 0.049 12.9 4.1 0.061 12.6 4.1 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel Ni_hydr_CYTB PF01292.20 CQR56077.1 - 0.1 12.2 1.5 0.25 10.9 1.7 1.5 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF4199 PF13858.6 CQR56077.1 - 0.16 12.4 6.6 0.23 11.9 6.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DUF4064 PF13273.6 CQR56077.1 - 0.16 12.2 13.1 0.25 11.6 13.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF1461 PF07314.11 CQR56077.1 - 0.18 11.7 1.8 0.21 11.4 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) UL42 PF17638.2 CQR56077.1 - 0.34 10.9 2.3 0.53 10.3 1.9 1.5 1 1 0 1 1 1 0 HCMV UL42 DUF2976 PF11190.8 CQR56077.1 - 0.41 10.5 5.8 4 7.3 6.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) DUF2530 PF10745.9 CQR56077.1 - 0.54 10.5 4.8 0.46 10.8 3.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) K1 PF02960.14 CQR56077.1 - 2.8 8.1 5.3 1.5 8.9 1.5 2.0 1 1 1 2 2 2 0 K1 glycoprotein Yip1 PF04893.17 CQR56077.1 - 5.6 6.7 14.8 19 5.0 14.2 1.8 1 1 0 1 1 1 0 Yip1 domain Response_reg PF00072.24 CQR56078.1 - 1.5e-25 89.5 0.0 2.7e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR56078.1 - 7.1e-22 77.5 0.4 1.9e-21 76.1 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56078.1 - 8.5e-17 60.8 0.2 4e-07 30.0 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR56078.1 - 0.0013 19.0 0.1 0.0035 17.6 0.1 1.7 1 0 0 1 1 1 1 GGDEF-like domain DUF1995 PF09353.10 CQR56078.1 - 0.086 12.9 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) His_kinase PF06580.13 CQR56079.1 - 1.4e-24 86.2 0.2 2.5e-24 85.4 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR56079.1 - 1e-07 32.4 0.0 1.8e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR56079.1 - 0.00052 19.9 0.0 0.00087 19.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR56079.1 - 0.039 13.9 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain dCache_1 PF02743.18 CQR56080.1 - 3.9e-21 76.0 2.1 5.4e-21 75.5 2.1 1.2 1 0 0 1 1 1 1 Cache domain ABC2_membrane_5 PF13346.6 CQR56080.1 - 0.026 14.1 3.7 0.11 12.0 0.5 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein BPD_transp_1 PF00528.22 CQR56081.1 - 4.4e-21 75.4 19.6 4.4e-21 75.4 19.6 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR56082.1 - 7.7e-16 58.4 9.9 7.7e-16 58.4 9.9 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR56083.1 - 8.4e-41 140.9 11.3 1.3e-40 140.3 11.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR56083.1 - 5.3e-37 128.2 7.5 8.6e-37 127.5 7.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR56083.1 - 0.004 16.6 0.5 0.081 12.3 0.1 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Condensation PF00668.20 CQR56083.1 - 0.028 13.1 3.2 0.23 10.1 0.0 2.3 3 0 0 3 3 3 0 Condensation domain DUF4179 PF13786.6 CQR56083.1 - 0.078 13.5 1.1 0.28 11.7 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) DEAD PF00270.29 CQR56084.1 - 1.5e-20 73.7 0.0 3.8e-20 72.4 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR56084.1 - 1.4e-12 48.0 0.0 2.1e-11 44.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR56084.1 - 0.00059 19.9 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2791 PF10923.8 CQR56085.1 - 3.1e-168 559.9 0.1 3.5e-168 559.7 0.1 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.6 CQR56085.1 - 0.0001 22.8 0.0 0.0003 21.2 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 CQR56085.1 - 0.029 14.1 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 CQR56085.1 - 0.036 13.3 0.0 0.047 12.9 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_22 PF13401.6 CQR56085.1 - 0.076 13.3 0.1 1.7 8.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain DAP3 PF10236.9 CQR56085.1 - 0.1 11.8 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.6 CQR56085.1 - 0.15 11.8 0.1 0.34 10.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TerB_N PF13208.6 CQR56086.1 - 3.3e-34 118.5 1.1 5.6e-34 117.7 1.1 1.4 1 0 0 1 1 1 1 TerB N-terminal domain TerB_C PF15615.6 CQR56086.1 - 1e-09 38.9 3.6 1e-09 38.9 3.6 2.7 3 1 0 3 3 3 1 TerB-C domain MFS_1 PF07690.16 CQR56087.1 - 3.8e-50 170.8 59.0 7.8e-39 133.6 27.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR56087.1 - 6.4e-38 130.8 39.0 3.7e-29 101.9 7.8 2.0 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 CQR56087.1 - 1.7e-05 24.3 31.2 2.3e-05 23.8 31.2 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 CQR56087.1 - 0.11 11.3 23.8 0.88 8.4 21.3 3.1 1 1 1 2 2 2 0 MFS_1 like family BCLP PF12304.8 CQR56087.1 - 2.9 7.4 6.4 0.35 10.4 0.8 2.3 2 0 0 2 2 2 0 Beta-casein like protein DUF1836 PF08876.11 CQR56088.1 - 2.6e-13 49.9 0.0 6.5e-13 48.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1836) Med8 PF10232.9 CQR56088.1 - 0.064 12.8 0.2 0.1 12.2 0.2 1.2 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DUF21 PF01595.20 CQR56089.1 - 1.2e-48 165.1 3.6 2e-48 164.4 3.6 1.3 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 CQR56089.1 - 9.6e-17 60.8 0.1 2e-16 59.7 0.1 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 CQR56089.1 - 2.2e-11 44.0 0.4 0.00011 22.6 0.2 2.6 2 0 0 2 2 2 2 CBS domain Acetyltransf_1 PF00583.25 CQR56090.1 - 1.3e-15 57.7 0.1 1.6e-15 57.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 CQR56090.1 - 1.6e-13 51.1 0.0 1.9e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR56090.1 - 4.8e-10 39.5 0.0 5.8e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56090.1 - 1.9e-07 31.4 0.1 2.8e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR56090.1 - 6.3e-07 30.2 0.0 7.6e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56090.1 - 3.5e-05 23.7 0.1 6.4e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 CQR56090.1 - 0.0017 18.5 0.0 0.0022 18.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56091.1 - 2.8e-16 59.8 0.0 3.4e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR56091.1 - 7.7e-12 45.5 0.0 1.2e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR56091.1 - 9.5e-11 41.7 0.0 1.2e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR56091.1 - 2.5e-07 30.8 0.1 3.1e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56091.1 - 3.4e-06 26.9 0.0 5.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR56091.1 - 0.0034 17.5 0.0 0.005 16.9 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 CQR56091.1 - 0.0088 16.2 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Glyoxalase PF00903.25 CQR56092.1 - 2.1e-09 37.7 0.0 5.4e-08 33.1 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 CQR56092.1 - 4.8e-06 27.3 0.0 1e-05 26.3 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 CQR56092.1 - 0.00095 19.1 0.0 0.015 15.3 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain TrkH PF02386.16 CQR56093.1 - 2.4e-56 191.3 25.3 2.2e-55 188.1 25.3 1.9 1 1 0 1 1 1 1 Cation transport protein Peptidase_M29 PF02073.15 CQR56095.1 - 1.9e-172 573.6 0.0 2.2e-172 573.5 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_M29 PF02073.15 CQR56096.1 - 9.4e-167 554.9 0.0 1.1e-166 554.7 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) TetR_C_33 PF13305.6 CQR56099.1 - 1.8e-21 76.8 1.0 3e-21 76.1 0.0 1.8 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR56099.1 - 2.3e-07 30.5 1.3 3.7e-07 29.8 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_20 PF12840.7 CQR56099.1 - 0.006 16.6 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 CQR56099.1 - 0.064 13.1 0.4 0.54 10.1 0.1 2.5 2 1 0 2 2 2 0 IclR helix-turn-helix domain Lactamase_B PF00753.27 CQR56100.1 - 1.8e-29 103.1 0.0 2.1e-29 102.9 0.0 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR56100.1 - 7.3e-07 28.9 0.0 9.9e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 CQR56100.1 - 0.12 11.8 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Abhydrolase_6 PF12697.7 CQR56101.1 - 3.5e-12 47.4 0.0 4.5e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 CQR56101.1 - 5.6e-12 45.8 0.0 8.4e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 CQR56101.1 - 1.2e-05 24.7 0.0 3.3e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 CQR56101.1 - 0.00028 21.1 0.0 0.00044 20.4 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_5 PF12695.7 CQR56101.1 - 0.0018 18.1 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF4179 PF13786.6 CQR56101.1 - 0.051 14.0 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) Ser_hydrolase PF06821.13 CQR56101.1 - 0.069 13.0 0.0 0.14 12.0 0.0 1.5 2 0 0 2 2 2 0 Serine hydrolase PGAP1 PF07819.13 CQR56101.1 - 0.072 12.8 0.0 0.23 11.1 0.0 1.7 2 0 0 2 2 2 0 PGAP1-like protein Lipase_3 PF01764.25 CQR56101.1 - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Palm_thioest PF02089.15 CQR56101.1 - 0.19 11.5 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase DSX_dimer PF08828.10 CQR56103.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR56103.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR56104.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR56104.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR56104.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR56104.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) ABC_tran PF00005.27 CQR56105.1 - 2.5e-30 105.8 0.0 3.6e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56105.1 - 5.1e-12 46.2 0.3 2.1e-05 24.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56105.1 - 5.6e-10 39.0 0.1 7e-06 25.6 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR56105.1 - 2.7e-05 24.5 0.0 6.1e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR56105.1 - 4.3e-05 23.4 0.0 0.00031 20.6 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 CQR56105.1 - 0.00032 20.0 0.0 0.00044 19.5 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain RsgA_GTPase PF03193.16 CQR56105.1 - 0.00051 20.0 0.0 0.0013 18.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR56105.1 - 0.00091 18.9 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 CQR56105.1 - 0.00096 19.1 0.0 0.0027 17.6 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain TniB PF05621.11 CQR56105.1 - 0.0012 18.2 0.0 0.25 10.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_30 PF13604.6 CQR56105.1 - 0.0019 17.9 0.2 0.17 11.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 CQR56105.1 - 0.002 17.7 0.3 0.14 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 CQR56105.1 - 0.0028 18.0 0.2 0.011 16.1 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 CQR56105.1 - 0.0031 18.1 0.0 0.01 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 CQR56105.1 - 0.0043 17.6 0.7 0.011 16.3 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR56105.1 - 0.018 15.2 0.0 0.046 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 CQR56105.1 - 0.021 15.2 0.1 1.3 9.5 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 CQR56105.1 - 0.023 15.1 0.0 0.064 13.7 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 CQR56105.1 - 0.044 13.5 0.0 0.084 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR56105.1 - 0.055 13.4 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 CQR56105.1 - 0.074 11.8 0.0 4.4 6.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ATPase_2 PF01637.18 CQR56105.1 - 0.079 12.9 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 CQR56105.1 - 0.082 12.9 0.0 0.3 11.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 CQR56105.1 - 0.085 12.0 0.2 0.24 10.5 0.0 1.7 2 1 0 2 2 2 0 G-protein alpha subunit AAA_28 PF13521.6 CQR56105.1 - 0.1 12.8 0.1 0.25 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR56105.1 - 0.11 12.7 0.0 1.5 9.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.9 CQR56105.1 - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 CQR56105.1 - 0.19 11.9 0.2 0.46 10.6 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.22 CQR56106.1 - 6.4e-40 136.9 10.8 6.4e-40 136.9 10.8 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TssN PF17555.2 CQR56106.1 - 0.27 10.6 6.7 0.22 10.9 2.0 2.2 2 0 0 2 2 2 0 Type VI secretion system, TssN BPD_transp_1 PF00528.22 CQR56107.1 - 1.9e-27 96.2 18.8 1.9e-27 96.2 18.8 2.3 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 CQR56108.1 - 5.3e-40 137.9 7.2 5.3e-40 137.9 7.2 2.3 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 CQR56108.1 - 1.4e-27 96.1 0.1 1.8e-27 95.7 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 CQR56108.1 - 8.7e-10 38.7 0.2 1.7e-09 37.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR56108.1 - 1.6e-06 28.3 4.5 1.2e-05 25.4 4.5 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 CQR56109.1 - 5e-40 137.1 1.1 6.3e-40 136.8 1.1 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR56109.1 - 1.1e-12 47.8 0.0 2.1e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 CQR56109.1 - 0.00034 20.4 0.0 0.00071 19.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.19 CQR56109.1 - 0.013 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 CQR56109.1 - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 CQR56109.1 - 0.085 12.7 0.0 0.26 11.1 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.6 CQR56109.1 - 0.095 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Methyltransf_25 PF13649.6 CQR56110.1 - 5.9e-08 33.3 0.0 5.8e-07 30.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56110.1 - 7.5e-07 29.1 0.0 1.3e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR56110.1 - 1.1e-06 29.1 0.0 3.1e-06 27.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR56110.1 - 4.1e-05 24.3 0.0 0.00011 22.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR56110.1 - 0.005 16.2 0.0 0.0074 15.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 CQR56110.1 - 0.039 13.8 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 CQR56110.1 - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase EamA PF00892.20 CQR56111.1 - 2.8e-33 115.0 40.4 1.7e-20 73.6 14.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 CQR56111.1 - 0.0068 15.8 1.3 0.0068 15.8 1.3 2.3 2 0 0 2 2 2 1 Triose-phosphate Transporter family SLC35F PF06027.12 CQR56111.1 - 0.0074 15.8 13.3 0.013 15.1 13.3 1.5 1 1 0 1 1 1 1 Solute carrier family 35 UAA PF08449.11 CQR56111.1 - 4.3 6.5 12.2 78 2.3 12.2 2.4 1 1 0 1 1 1 0 UAA transporter family Isochorismatase PF00857.20 CQR56112.1 - 2.2e-34 119.1 0.0 2.3e-34 119.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M55 PF04951.13 CQR56112.1 - 0.06 12.7 0.0 0.086 12.2 0.0 1.2 1 0 0 1 1 1 0 D-aminopeptidase Radical_SAM PF04055.21 CQR56113.1 - 1.6e-11 44.9 0.0 2.1e-11 44.5 0.0 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR56113.1 - 1.7e-08 34.9 0.0 3.3e-08 33.9 0.0 1.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR56113.1 - 2.1e-07 31.1 0.0 3.5e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Zwilch PF09817.9 CQR56113.1 - 0.023 13.2 0.0 0.028 12.9 0.0 1.0 1 0 0 1 1 1 0 RZZ complex, subunit zwilch DUF4316 PF14195.6 CQR56113.1 - 0.061 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4316) PTPS PF01242.19 CQR56114.1 - 7.6e-32 109.9 0.0 9e-32 109.6 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase QueC PF06508.13 CQR56115.1 - 2.1e-84 282.3 0.0 2.4e-84 282.1 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 CQR56115.1 - 1.2e-07 31.6 0.0 3.8e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 CQR56115.1 - 2.6e-05 24.1 0.0 4.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 CQR56115.1 - 0.0005 19.8 0.0 0.00072 19.3 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 CQR56115.1 - 0.00087 18.5 0.0 0.0033 16.6 0.0 1.8 2 0 0 2 2 2 1 NAD synthase Arginosuc_synth PF00764.19 CQR56115.1 - 0.0044 16.4 0.0 0.0059 15.9 0.0 1.1 1 0 0 1 1 1 1 Arginosuccinate synthase Diphthami_syn_2 PF01902.17 CQR56115.1 - 0.013 15.0 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Diphthamide synthase PAPS_reduct PF01507.19 CQR56115.1 - 0.016 15.3 0.1 0.036 14.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueF PF14489.6 CQR56116.1 - 1.1e-33 115.2 0.0 1.5e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 QueF-like protein QueF_N PF14819.6 CQR56116.1 - 0.00031 21.0 0.0 0.00038 20.7 0.0 1.3 1 0 0 1 1 1 1 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GTP_cyclohydroI PF01227.22 CQR56116.1 - 0.11 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 GTP cyclohydrolase I MurB_C PF02873.16 CQR56118.1 - 2.3e-33 114.8 0.0 3.9e-33 114.1 0.0 1.4 1 0 0 1 1 1 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 CQR56118.1 - 4.6e-25 88.0 0.3 8.5e-25 87.1 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain ABC_tran PF00005.27 CQR56119.1 - 5.2e-32 111.2 0.0 8.6e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56119.1 - 5e-11 43.0 1.7 6.3e-05 22.9 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56119.1 - 2.5e-09 36.9 0.0 0.00036 20.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR56119.1 - 4.4e-07 29.9 0.1 7.3e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR56119.1 - 1.1e-05 25.1 0.6 2.2e-05 24.1 0.6 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 CQR56119.1 - 6.6e-05 22.4 0.4 0.0015 17.9 0.2 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 CQR56119.1 - 0.00026 19.9 0.7 0.17 10.7 0.2 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR56119.1 - 0.0003 21.2 0.1 0.00068 20.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR56119.1 - 0.0015 19.1 0.2 0.0015 19.1 0.2 1.4 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 CQR56119.1 - 0.0018 18.0 0.4 0.0042 16.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 CQR56119.1 - 0.0052 16.0 0.1 0.0063 15.7 0.1 1.3 1 1 0 1 1 1 1 G-protein alpha subunit AAA PF00004.29 CQR56119.1 - 0.0068 16.8 0.5 0.29 11.6 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 CQR56119.1 - 0.008 15.5 0.1 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 CQR56119.1 - 0.02 14.8 0.2 0.036 14.0 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase ATP_bind_1 PF03029.17 CQR56119.1 - 0.021 14.6 0.3 0.99 9.1 0.2 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 CQR56119.1 - 0.025 14.2 1.5 0.026 14.2 0.4 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 CQR56119.1 - 0.026 14.6 0.2 0.17 11.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR56119.1 - 0.028 14.0 1.0 0.049 13.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 CQR56119.1 - 0.039 14.0 0.2 0.31 11.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 CQR56119.1 - 0.05 13.9 2.0 0.19 12.0 2.0 2.0 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 CQR56119.1 - 0.061 12.7 0.2 0.1 11.9 0.2 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_33 PF13671.6 CQR56119.1 - 0.078 13.1 0.9 0.31 11.2 0.9 1.9 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 CQR56119.1 - 0.083 12.6 0.1 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RecA PF00154.21 CQR56119.1 - 0.098 12.1 0.2 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein RNA_helicase PF00910.22 CQR56119.1 - 0.15 12.5 0.1 0.88 10.0 0.1 2.0 2 0 0 2 2 2 0 RNA helicase APS_kinase PF01583.20 CQR56119.1 - 0.16 11.9 0.1 0.27 11.1 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Pilus_CpaD PF09476.10 CQR56119.1 - 0.16 11.7 0.1 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) AAA_24 PF13479.6 CQR56119.1 - 0.17 11.6 0.3 0.54 10.0 0.1 1.8 2 0 0 2 2 2 0 AAA domain DDE_3 PF13358.6 CQR56119.1 - 0.18 11.5 0.0 0.77 9.5 0.0 1.9 2 0 0 2 2 2 0 DDE superfamily endonuclease AAA_7 PF12775.7 CQR56119.1 - 0.18 11.3 0.2 0.37 10.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region MukB PF04310.12 CQR56119.1 - 0.23 11.3 0.8 0.37 10.6 0.2 1.6 2 0 0 2 2 2 0 MukB N-terminal Rad17 PF03215.15 CQR56119.1 - 0.23 11.3 0.3 2.6 8.0 0.1 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 CQR56119.1 - 0.29 11.0 0.9 0.7 9.8 0.2 1.8 2 0 0 2 2 2 0 NACHT domain FecCD PF01032.18 CQR56120.1 - 4e-97 325.0 27.7 4.9e-97 324.7 27.7 1.0 1 0 0 1 1 1 1 FecCD transport family B12D PF06522.11 CQR56120.1 - 1.6 8.6 6.8 25 4.7 0.1 3.8 3 0 0 3 3 3 0 NADH-ubiquinone reductase complex 1 MLRQ subunit FecCD PF01032.18 CQR56121.1 - 1.2e-86 290.5 39.1 1.5e-86 290.2 39.1 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 CQR56122.1 - 6.5e-23 81.5 0.3 9.2e-23 81.0 0.3 1.2 1 0 0 1 1 1 1 Periplasmic binding protein AA_permease_2 PF13520.6 CQR56123.1 - 9.8e-31 107.0 54.0 1.2e-30 106.7 54.0 1.1 1 0 0 1 1 1 1 Amino acid permease Bunya_G2 PF03563.13 CQR56123.1 - 5 6.3 7.0 1.5 8.0 0.5 2.3 2 0 0 2 2 2 0 Bunyavirus glycoprotein G2 DsbB PF02600.16 CQR56124.1 - 8.2e-13 49.0 8.5 5.9e-12 46.2 8.5 1.9 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Thioredoxin_4 PF13462.6 CQR56125.1 - 4.2e-33 114.9 0.1 6.2e-33 114.3 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 CQR56125.1 - 3.4e-08 33.5 0.5 1.3e-06 28.3 0.0 2.1 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 CQR56125.1 - 5.1e-07 29.6 0.1 7.9e-07 28.9 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin ETRAMP PF09716.10 CQR56125.1 - 0.0041 17.2 0.2 0.01 15.9 0.2 1.6 1 0 0 1 1 1 1 Malarial early transcribed membrane protein (ETRAMP) Thioredoxin_3 PF13192.6 CQR56125.1 - 0.0093 16.0 0.1 0.085 12.9 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.6 CQR56125.1 - 0.033 14.6 1.0 0.14 12.6 1.0 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Phage_holin_3_6 PF07332.11 CQR56125.1 - 0.11 12.5 0.3 0.19 11.7 0.3 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III HATPase_c PF02518.26 CQR56126.1 - 2e-33 115.2 0.1 7.1e-33 113.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56126.1 - 4.8e-13 48.9 1.0 1.1e-12 47.7 1.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain MHYT PF03707.16 CQR56126.1 - 5.7e-11 42.4 17.9 4.6e-10 39.5 1.1 4.5 4 0 0 4 4 4 1 Bacterial signalling protein N terminal repeat PAS_9 PF13426.7 CQR56126.1 - 9.6e-10 38.7 0.0 2e-09 37.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 CQR56126.1 - 0.00012 22.3 0.0 0.00024 21.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 CQR56126.1 - 0.00014 21.8 0.0 0.00038 20.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 CQR56126.1 - 0.00033 20.6 0.0 0.00094 19.2 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_12 PF18095.1 CQR56126.1 - 0.0069 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 UPF0242 C-terminal PAS-like domain DUF1201 PF06716.11 CQR56126.1 - 0.067 13.2 0.1 0.55 10.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) HATPase_c_3 PF13589.6 CQR56126.1 - 0.12 12.2 0.0 0.32 10.8 0.0 1.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Mem_trans PF03547.18 CQR56126.1 - 2.2 6.6 11.6 0.2 10.0 0.6 2.3 2 0 0 2 2 2 0 Membrane transport protein DUF21 PF01595.20 CQR56127.1 - 8.5e-45 152.6 6.0 1.2e-44 152.1 6.0 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 CQR56127.1 - 8.2e-18 64.2 1.2 1.1e-17 63.8 0.2 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 CQR56127.1 - 6.9e-11 42.4 2.8 3.4e-05 24.2 0.1 2.9 3 0 0 3 3 3 2 CBS domain Spore_GerQ PF09671.10 CQR56129.1 - 1.2e-36 124.6 0.7 1.6e-36 124.2 0.7 1.2 1 0 0 1 1 1 1 Spore coat protein (Spore_GerQ) Forkhead_N PF08430.12 CQR56129.1 - 2.7e-05 24.8 38.0 3.8e-05 24.3 38.0 1.1 1 0 0 1 1 1 1 Forkhead N-terminal region Hydrolase_2 PF07486.12 CQR56130.1 - 2.8e-15 57.0 0.0 3.4e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 Cell Wall Hydrolase DUF2500 PF10694.9 CQR56131.1 - 3.5e-32 111.2 0.0 4.1e-32 110.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2500) ORF11CD3 PF10549.9 CQR56131.1 - 0.13 12.4 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 ORF11CD3 domain Herpes_UL92 PF03048.14 CQR56132.1 - 0.079 12.7 1.1 0.071 12.9 1.1 1.1 1 0 0 1 1 1 0 UL92 family adh_short_C2 PF13561.6 CQR56133.1 - 1.1e-71 241.1 2.3 1.3e-71 240.9 2.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR56133.1 - 1e-57 194.8 1.5 1.3e-57 194.4 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR56133.1 - 4.5e-11 43.0 0.8 6.4e-11 42.5 0.8 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR56133.1 - 0.0003 20.3 0.1 0.00041 19.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family AA_permease PF00324.21 CQR56134.1 - 2.4e-30 105.6 39.7 3.3e-30 105.1 39.7 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 CQR56134.1 - 4.6e-30 104.8 44.1 6.6e-30 104.3 44.1 1.1 1 0 0 1 1 1 1 Amino acid permease Ribosomal_S5_C PF03719.15 CQR56134.1 - 0.065 12.7 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S5, C-terminal domain ELFV_dehydrog_N PF02812.18 CQR56135.1 - 1.4e-28 99.4 0.0 2.6e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ELFV_dehydrog PF00208.21 CQR56135.1 - 1.3e-18 67.6 1.3 1.4e-09 38.0 0.0 2.2 1 1 1 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 CQR56135.1 - 0.0004 19.8 0.0 0.00082 18.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 CQR56135.1 - 0.0007 19.7 0.2 0.0012 18.9 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short_C2 PF13561.6 CQR56135.1 - 0.0049 16.5 0.1 0.014 15.0 0.1 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase TrkA_N PF02254.18 CQR56135.1 - 0.012 15.9 0.1 0.037 14.3 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 CQR56135.1 - 0.045 14.2 0.1 0.097 13.1 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding UPF0146 PF03686.13 CQR56135.1 - 0.13 12.2 0.4 0.25 11.2 0.1 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) MFS_1 PF07690.16 CQR56136.1 - 2.6e-33 115.4 75.2 5.5e-30 104.5 50.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ACT_4 PF13291.6 CQR56136.1 - 1.6e-09 38.3 0.0 2.9e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 ACT domain Sugar_tr PF00083.24 CQR56136.1 - 9.5e-08 31.3 28.0 1.4e-06 27.5 10.9 2.6 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR56136.1 - 0.00027 19.9 4.2 0.00027 19.9 4.2 2.2 2 0 0 2 2 2 1 MFS_1 like family ACT PF01842.25 CQR56136.1 - 0.0034 17.1 0.0 0.0073 16.1 0.0 1.5 1 0 0 1 1 1 1 ACT domain DUF43 PF01861.16 CQR56136.1 - 0.011 14.9 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain ACT_6 PF13740.6 CQR56136.1 - 0.12 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 ACT domain PUCC PF03209.15 CQR56136.1 - 0.23 10.4 29.6 0.026 13.5 10.4 2.7 2 1 0 2 2 2 0 PUCC protein ACT_5 PF13710.6 CQR56137.1 - 2.2e-05 24.2 0.1 3.2e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 ACT domain DUF5321 PF17254.2 CQR56137.1 - 0.13 11.7 0.4 0.15 11.5 0.4 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5321) Aldedh PF00171.22 CQR56138.1 - 9.7e-163 541.9 0.1 1.1e-162 541.8 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Gln-synt_C PF00120.24 CQR56139.1 - 7.8e-98 327.6 0.0 9.3e-98 327.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain adh_short_C2 PF13561.6 CQR56140.1 - 2.9e-68 229.9 0.5 3.3e-68 229.7 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR56140.1 - 1.2e-54 184.8 2.1 1.5e-54 184.5 2.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR56140.1 - 5.1e-07 29.8 0.7 8.1e-07 29.1 0.7 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 CQR56140.1 - 0.0019 18.1 1.5 0.0026 17.7 1.5 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peptidase_M20 PF01546.28 CQR56141.1 - 8e-29 100.8 0.0 9.9e-29 100.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR56141.1 - 1.8e-20 72.9 0.0 4e-20 71.7 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 CQR56141.1 - 0.0013 18.5 0.0 0.025 14.2 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Sigma54_activat PF00158.26 CQR56143.1 - 7.6e-67 224.2 0.0 1.2e-66 223.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 CQR56143.1 - 5.7e-19 68.6 0.0 2.9e-18 66.3 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 CQR56143.1 - 1.1e-06 29.2 0.0 4e-06 27.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR56143.1 - 1.2e-06 28.6 0.0 3.2e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PAS_8 PF13188.7 CQR56143.1 - 2.8e-05 24.0 0.1 0.0002 21.3 0.0 2.3 1 1 1 2 2 2 1 PAS domain Mg_chelatase PF01078.21 CQR56143.1 - 9.3e-05 21.9 0.0 0.003 17.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 CQR56143.1 - 0.00078 19.6 0.0 0.0028 17.8 0.0 2.0 3 0 0 3 3 3 1 AAA domain (Cdc48 subfamily) MCM PF00493.23 CQR56143.1 - 0.0015 17.7 0.0 0.013 14.6 0.0 2.4 2 1 0 2 2 2 1 MCM P-loop domain AAA_3 PF07726.11 CQR56143.1 - 0.0027 17.6 0.0 0.0062 16.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PAS PF00989.25 CQR56143.1 - 0.023 14.7 0.1 0.23 11.5 0.0 2.7 3 1 1 4 4 4 0 PAS fold AAA_7 PF12775.7 CQR56143.1 - 0.05 13.1 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_12 PF08461.10 CQR56143.1 - 0.081 12.9 1.4 0.71 9.9 0.1 2.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Sigma54_DBD PF04552.13 CQR56144.1 - 3e-53 179.8 0.0 4.7e-53 179.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 CQR56144.1 - 1.6e-42 145.4 0.1 4e-42 144.1 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 CQR56144.1 - 1.1e-12 47.6 6.4 1.1e-12 47.6 6.4 2.1 2 0 0 2 2 2 1 Sigma-54 factor, Activator interacting domain (AID) MCPsignal PF00015.21 CQR56145.1 - 1.9e-44 151.5 19.6 1.9e-44 151.5 19.6 3.6 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR56145.1 - 4.5e-10 39.7 2.6 1.5e-08 34.9 0.0 4.4 5 0 0 5 5 5 1 HAMP domain dCache_1 PF02743.18 CQR56145.1 - 9e-10 38.8 1.7 1.4e-09 38.1 0.0 2.2 2 0 0 2 2 2 1 Cache domain DUF3458_C PF17432.2 CQR56145.1 - 0.00067 19.1 0.1 0.00067 19.1 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3458_C) ARM repeats Arfaptin PF06456.13 CQR56145.1 - 0.0017 17.9 0.8 0.0017 17.9 0.8 2.3 2 1 0 2 2 2 1 Arfaptin-like domain NPV_P10 PF05531.12 CQR56145.1 - 0.0064 16.9 4.1 24 5.5 0.0 5.4 5 0 0 5 5 5 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.11 CQR56145.1 - 0.073 13.3 15.8 2.5 8.4 1.6 5.5 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Serine_rich PF08824.10 CQR56145.1 - 0.088 12.8 8.3 0.056 13.4 2.4 3.2 2 1 1 3 3 3 0 Serine rich protein interaction domain APG17 PF04108.12 CQR56145.1 - 0.28 10.3 11.3 1.6 7.7 2.5 2.4 2 0 0 2 2 2 0 Autophagy protein Apg17 Cache_3-Cache_2 PF17201.4 CQR56145.1 - 0.43 9.8 7.4 0.55 9.5 0.0 3.6 4 0 0 4 4 4 0 Cache 3/Cache 2 fusion domain DUF1664 PF07889.12 CQR56145.1 - 0.51 10.4 15.1 3.2 7.8 0.8 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) ThiD2 PF17792.1 CQR56145.1 - 0.55 10.7 7.1 0.22 12.0 2.2 2.4 2 0 0 2 2 2 0 ThiD2 family Syntaxin_2 PF14523.6 CQR56145.1 - 0.82 10.1 8.9 1.8 9.0 1.8 4.0 2 2 1 3 3 3 0 Syntaxin-like protein GIT1_C PF12205.8 CQR56145.1 - 1.2 9.3 8.6 0.4 10.8 0.8 3.0 2 1 1 3 3 3 0 G protein-coupled receptor kinase-interacting protein 1 C term Vps5 PF09325.10 CQR56145.1 - 1.6 8.2 15.8 0.02 14.5 5.7 2.8 2 1 1 3 3 3 0 Vps5 C terminal like Laminin_II PF06009.12 CQR56145.1 - 3.1 7.8 18.5 2 8.5 2.2 4.0 3 1 1 4 4 4 0 Laminin Domain II BLOC1_2 PF10046.9 CQR56145.1 - 4.9 7.5 13.9 3 8.2 1.2 4.3 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 T7SS_ESX_EspC PF10824.8 CQR56145.1 - 5.1 7.6 26.3 3.2 8.3 0.0 5.1 3 2 2 5 5 5 0 Excreted virulence factor EspC, type VII ESX diderm T3SchapCesA PF11439.8 CQR56145.1 - 5.2 7.3 8.5 2.2 8.5 0.3 4.0 3 1 1 5 5 5 0 Type III secretion system filament chaperone CesA Pox_EPC_I2-L1 PF12575.8 CQR56145.1 - 6 7.2 6.4 14 6.0 1.9 2.8 2 1 0 2 2 2 0 Poxvirus entry protein complex L1 and I2 COG2 PF06148.11 CQR56145.1 - 9.8 6.3 14.1 1.1 9.3 2.1 4.0 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF148 PF02520.17 CQR56145.1 - 9.8 6.3 8.2 2.5 8.3 0.4 3.3 4 0 0 4 4 3 0 Domain of unknown function DUF148 Sortilin-Vps10 PF15902.5 CQR56146.1 - 6.4e-17 61.5 0.2 8.9e-10 37.9 0.1 3.0 3 0 0 3 3 3 2 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 CQR56146.1 - 5.1e-11 42.4 8.6 1.1e-06 28.1 0.6 5.2 2 2 3 5 5 5 4 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 CQR56146.1 - 7.1e-10 37.4 22.1 0.59 10.4 0.2 7.0 6 0 0 6 6 6 6 BNR/Asp-box repeat BNR_2 PF13088.6 CQR56146.1 - 2.3e-05 23.9 4.6 5.4e-05 22.6 1.6 2.3 1 1 1 2 2 2 1 BNR repeat-like domain AA_permease_2 PF13520.6 CQR56147.1 - 6.7e-63 213.0 40.6 8.5e-63 212.6 40.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 CQR56147.1 - 4.4e-41 141.0 36.0 5.7e-41 140.6 36.0 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 CQR56147.1 - 3.4e-16 59.1 3.8 3.4e-16 59.1 3.8 4.5 5 0 0 5 5 5 1 C-terminus of AA_permease Spore_permease PF03845.13 CQR56147.1 - 3e-05 23.0 8.9 3e-05 23.0 8.9 3.6 4 0 0 4 4 4 2 Spore germination protein Ldh_1_N PF00056.23 CQR56148.1 - 3.6e-41 140.6 0.1 5.3e-41 140.0 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 CQR56148.1 - 1.6e-32 112.8 0.0 2.4e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 CQR56148.1 - 0.0006 19.4 0.2 0.0038 16.8 0.0 2.0 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 CQR56148.1 - 0.002 17.7 0.1 0.057 13.0 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 CQR56148.1 - 0.0025 17.5 0.6 0.0064 16.1 0.3 1.7 1 1 1 2 2 2 1 FAD dependent oxidoreductase 3Beta_HSD PF01073.19 CQR56148.1 - 0.014 14.4 0.1 0.021 13.9 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family AlaDh_PNT_C PF01262.21 CQR56148.1 - 0.04 13.2 0.0 0.076 12.3 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 CQR56148.1 - 0.066 13.7 0.0 0.19 12.2 0.0 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 CQR56148.1 - 0.083 13.2 0.3 0.43 10.9 0.1 2.2 1 1 0 2 2 2 0 TrkA-N domain Shikimate_DH PF01488.20 CQR56148.1 - 0.087 12.9 0.0 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF1188 PF06690.11 CQR56148.1 - 0.091 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) NAD_binding_8 PF13450.6 CQR56148.1 - 0.11 12.8 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 CQR56148.1 - 0.14 12.4 0.1 0.35 11.1 0.1 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Phage_integrase PF00589.22 CQR56149.1 - 2.7e-36 124.9 0.1 3.6e-36 124.5 0.1 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 CQR56149.1 - 1.8e-13 50.7 0.1 5.1e-12 46.1 0.0 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 CQR56149.1 - 5.5e-09 36.2 0.1 2.9e-08 33.9 0.0 2.3 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain LysR_substrate PF03466.20 CQR56150.1 - 1.7e-48 164.8 0.3 2.3e-48 164.3 0.3 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR56150.1 - 1.1e-20 73.3 0.1 3.1e-20 71.9 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family AA_permease_2 PF13520.6 CQR56151.1 - 1.3e-30 106.7 52.4 1.7e-30 106.2 52.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 CQR56151.1 - 3.6e-24 85.2 44.6 5e-24 84.7 44.6 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 CQR56151.1 - 8.6e-06 24.8 8.5 8.6e-06 24.8 8.5 2.0 2 0 0 2 2 2 1 Spore germination protein DUF5056 PF16479.5 CQR56151.1 - 0.36 11.1 2.6 3.4 8.0 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5056) DUF2448 PF10476.9 CQR56151.1 - 2.5 7.9 4.7 1.5 8.6 2.3 1.9 1 1 1 2 2 2 0 Protein of unknown function C-terminus (DUF2448) STT3 PF02516.14 CQR56152.1 - 0.45 9.4 10.1 0.49 9.3 10.1 1.0 1 0 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit Abhydrolase_3 PF07859.13 CQR56154.1 - 3.2e-34 118.7 0.0 3.6e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 alpha/beta hydrolase fold DEDD_Tnp_IS110 PF01548.17 CQR56155.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR56155.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR56155.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR56155.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DSX_dimer PF08828.10 CQR56156.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR56156.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain SKA2 PF16740.5 CQR56158.1 - 0.045 13.6 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 NTP_transf_2 PF01909.23 CQR56158.1 - 0.048 14.0 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Nucleotidyltransferase domain PQQ_2 PF13360.6 CQR56159.1 - 5.8e-23 81.7 0.2 6.6e-17 61.9 0.0 2.6 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 CQR56159.1 - 1.4e-10 40.6 0.3 0.013 15.4 0.0 4.9 4 0 0 4 4 4 3 PQQ enzyme repeat PQQ_3 PF13570.6 CQR56159.1 - 2.8e-08 34.0 0.3 0.043 14.3 0.0 6.2 6 0 0 6 6 6 1 PQQ-like domain DUF5050 PF16472.5 CQR56159.1 - 0.027 13.7 0.3 0.11 11.7 0.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5050) Laminin_G_2 PF02210.24 CQR56159.1 - 0.12 13.0 0.0 0.24 12.0 0.0 1.5 1 0 0 1 1 1 0 Laminin G domain Aminotran_1_2 PF00155.21 CQR56160.1 - 2.9e-47 161.6 0.0 3.4e-47 161.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II TetR_C_8 PF14278.6 CQR56161.1 - 5.1e-17 61.9 0.2 5.1e-17 61.9 0.2 2.1 3 0 0 3 3 3 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR56161.1 - 3.2e-13 49.3 0.0 9.8e-13 47.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR56161.1 - 0.0011 19.0 0.7 0.0017 18.5 0.7 1.4 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_40 PF14493.6 CQR56161.1 - 0.017 15.5 0.1 0.052 14.0 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR56161.1 - 0.024 14.6 0.0 0.056 13.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain Terminase_5 PF06056.12 CQR56161.1 - 0.028 14.3 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_5 PF01022.20 CQR56161.1 - 0.037 13.9 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 CQR56161.1 - 0.043 13.9 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HAD_2 PF13419.6 CQR56161.1 - 0.06 13.4 0.6 0.074 13.1 0.6 1.2 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase TnsD PF15978.5 CQR56161.1 - 0.063 12.3 0.1 0.07 12.1 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D CdiI_4 PF18624.1 CQR56161.1 - 0.078 13.5 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 CDI immunity protein TrmB PF01978.19 CQR56161.1 - 0.094 12.6 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_AraC PF00165.23 CQR56161.1 - 0.13 12.4 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family adh_short PF00106.25 CQR56162.1 - 5.4e-44 150.0 0.1 6.9e-44 149.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR56162.1 - 4.4e-25 88.6 0.1 5.6e-25 88.3 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR56162.1 - 6.4e-10 39.2 0.1 9.2e-10 38.7 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR56162.1 - 1.1e-05 25.0 0.1 2.2e-05 24.0 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 CQR56162.1 - 0.00014 22.1 0.1 0.00055 20.2 0.1 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 CQR56162.1 - 0.00014 21.8 0.4 0.00017 21.5 0.4 1.4 1 1 0 1 1 1 1 NAD(P)H-binding DUF1776 PF08643.10 CQR56162.1 - 0.00027 20.4 0.4 0.00094 18.6 0.4 1.8 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) F420_oxidored PF03807.17 CQR56162.1 - 0.0035 17.9 3.3 0.03 14.9 3.1 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 CQR56162.1 - 0.0045 17.2 0.2 0.07 13.4 0.1 2.6 3 0 0 3 3 3 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 CQR56162.1 - 0.02 14.3 0.6 0.085 12.2 0.1 2.2 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 CQR56162.1 - 0.02 14.5 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA RmlD_sub_bind PF04321.17 CQR56162.1 - 0.086 11.9 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DSX_dimer PF08828.10 CQR56164.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR56164.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain Transposase_20 PF02371.16 CQR56165.1 - 4.2e-13 49.4 0.0 6.9e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family HbrB PF08539.11 CQR56165.1 - 0.064 13.2 0.1 0.072 13.1 0.1 1.1 1 0 0 1 1 1 0 HbrB-like DEDD_Tnp_IS110 PF01548.17 CQR56166.1 - 3.9e-25 88.5 0.0 4.6e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Transposase Ribonuc_2-5A PF06479.12 CQR56166.1 - 0.064 13.4 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease 2-5A Rop-like PF05082.13 CQR56166.1 - 0.12 12.2 0.5 0.21 11.4 0.5 1.4 1 0 0 1 1 1 0 Rop-like Cation_efflux PF01545.21 CQR56167.1 - 1.6e-23 83.5 10.0 2e-23 83.2 10.0 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 CQR56167.1 - 3.5e-08 33.5 0.1 8.2e-08 32.3 0.1 1.6 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter KAP_NTPase PF07693.14 CQR56167.1 - 0.011 15.0 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain 3-dmu-9_3-mt PF06983.13 CQR56168.1 - 8.4e-38 129.5 0.0 9.5e-38 129.3 0.0 1.0 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.25 CQR56168.1 - 9.4e-06 25.8 0.0 1.5e-05 25.2 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SBP_bac_5 PF00496.22 CQR56169.1 - 6.7e-38 130.6 0.0 4.9e-37 127.8 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SgrR_N PF12793.7 CQR56169.1 - 8.6e-24 84.0 0.0 5.9e-22 78.1 0.0 2.5 2 0 0 2 2 2 1 Sugar transport-related sRNA regulator N-term HTH_Crp_2 PF13545.6 CQR56169.1 - 0.00021 21.2 0.0 0.00094 19.1 0.0 2.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 CQR56169.1 - 0.0007 19.3 0.0 0.022 14.5 0.0 2.6 2 0 0 2 2 2 1 LexA DNA binding domain MarR PF01047.22 CQR56169.1 - 0.073 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 CQR56169.1 - 0.18 12.2 0.0 0.43 11.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator MFS_1 PF07690.16 CQR56170.1 - 2e-44 152.0 58.3 4.7e-34 117.9 35.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR56170.1 - 1.5e-09 37.2 9.5 1.5e-09 37.2 9.5 2.1 1 1 1 2 2 2 1 MFS_1 like family MFS_2 PF13347.6 CQR56170.1 - 9.1e-07 27.8 26.0 1.5e-06 27.1 26.1 1.4 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.24 CQR56170.1 - 9.2e-06 24.8 14.6 9.2e-06 24.8 14.6 2.2 2 0 0 2 2 2 1 Sugar (and other) transporter DUF3382 PF11862.8 CQR56170.1 - 0.0086 16.3 0.6 0.0086 16.3 0.6 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF3382) OATP PF03137.20 CQR56170.1 - 0.27 9.5 17.9 3.1 6.0 0.0 3.4 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Phage_holin_5_1 PF06946.11 CQR56170.1 - 0.81 10.1 10.8 0.71 10.3 1.9 3.3 3 0 0 3 3 3 0 Bacteriophage A118-like holin, Hol118 DUF3899 PF13038.6 CQR56170.1 - 2.1 8.9 10.2 0.55 10.8 0.5 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3899) MscL PF01741.18 CQR56170.1 - 6.7 7.0 7.7 0.72 10.2 1.4 2.6 3 0 0 3 3 3 0 Large-conductance mechanosensitive channel, MscL WYL PF13280.6 CQR56171.1 - 9.4e-36 123.4 1.7 1.5e-35 122.7 1.7 1.3 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR56171.1 - 4.5e-11 42.5 0.0 1.1e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR56171.1 - 3.2e-05 23.6 0.0 7.3e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 CQR56171.1 - 0.01 15.9 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR56171.1 - 0.015 15.4 0.0 0.054 13.6 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 CQR56171.1 - 0.038 14.3 0.2 0.11 12.8 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_Mga PF08280.11 CQR56171.1 - 0.11 12.6 0.1 0.34 11.0 0.1 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 CQR56171.1 - 0.11 12.4 0.2 0.28 11.2 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 CQR56171.1 - 0.11 12.3 0.4 0.29 11.0 0.2 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GFO_IDH_MocA PF01408.22 CQR56172.1 - 4.5e-21 75.9 0.0 7e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 CQR56172.1 - 0.0041 17.7 0.1 0.01 16.4 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 CQR56172.1 - 0.0051 16.8 0.0 0.013 15.5 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR56172.1 - 0.0057 17.3 0.0 0.0092 16.6 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain APC_r PF05923.12 CQR56172.1 - 0.0098 15.6 0.0 0.41 10.4 0.0 2.4 2 0 0 2 2 2 1 APC repeat Shikimate_DH PF01488.20 CQR56172.1 - 0.2 11.7 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Glyco_hydro_64 PF16483.5 CQR56174.1 - 0.045 13.0 0.3 0.095 12.0 0.3 1.5 1 0 0 1 1 1 0 Beta-1,3-glucanase HisKA PF00512.25 CQR56175.1 - 3.2e-13 49.5 0.0 1.1e-12 47.8 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 CQR56175.1 - 3.2e-11 43.7 0.0 8.5e-11 42.4 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR56175.1 - 1.4e-06 28.6 0.1 5.4e-06 26.7 0.1 1.9 1 0 0 1 1 1 1 HAMP domain Response_reg PF00072.24 CQR56176.1 - 6.5e-30 103.6 0.1 9.2e-30 103.1 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56176.1 - 1.1e-23 83.1 0.2 2.2e-23 82.1 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DUF1796 PF08795.10 CQR56176.1 - 0.16 12.0 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative papain-like cysteine peptidase (DUF1796) Beta-lactamase PF00144.24 CQR56177.1 - 8.8e-65 219.1 0.8 8.8e-65 219.1 0.8 1.5 2 0 0 2 2 2 1 Beta-lactamase ECF_trnsprt PF12822.7 CQR56177.1 - 0.037 14.1 5.5 3.6 7.7 3.8 2.4 1 1 1 2 2 2 0 ECF transporter, substrate-specific component Beta-lactamase2 PF13354.6 CQR56177.1 - 0.037 13.6 0.1 0.15 11.6 0.0 2.0 2 0 0 2 2 2 0 Beta-lactamase enzyme family LBP_BPI_CETP PF01273.25 CQR56177.1 - 0.084 12.5 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 LBP / BPI / CETP family, N-terminal domain Acetyltransf_1 PF00583.25 CQR56178.1 - 5.6e-06 26.6 0.0 7.9e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR56178.1 - 0.0088 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56178.1 - 0.076 13.4 0.0 0.15 12.5 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Phage_integrase PF00589.22 CQR56179.1 - 1.9e-25 89.6 0.3 3.2e-25 88.9 0.3 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 CQR56179.1 - 9.1e-08 32.3 0.4 3.6e-07 30.4 0.4 2.0 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Pentapeptide PF00805.22 CQR56180.1 - 6.6e-18 64.0 1.8 1.5e-13 50.1 1.3 2.6 1 1 1 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 CQR56180.1 - 2.3e-05 24.5 0.0 0.00026 21.1 0.0 2.3 2 0 0 2 2 2 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 CQR56180.1 - 6.1e-05 23.1 0.0 0.0039 17.3 0.1 2.9 2 1 1 3 3 3 2 Pentapeptide repeats (9 copies) MobB PF03205.14 CQR56181.1 - 1e-41 142.0 0.0 1.3e-41 141.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 CQR56181.1 - 2e-06 27.5 0.0 2.6e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 CQR56181.1 - 7.6e-05 21.8 0.1 0.00028 20.0 0.1 1.7 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 CQR56181.1 - 0.0034 17.4 0.0 0.0044 17.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 CQR56181.1 - 0.0066 16.9 0.0 0.013 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 CQR56181.1 - 0.016 15.1 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea LpxK PF02606.14 CQR56181.1 - 0.036 13.2 0.0 0.046 12.8 0.0 1.1 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase MMR_HSR1 PF01926.23 CQR56181.1 - 0.094 12.8 0.1 0.21 11.7 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase APS_kinase PF01583.20 CQR56181.1 - 0.12 12.2 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RecA PF00154.21 CQR56181.1 - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NACHT PF05729.12 CQR56181.1 - 0.17 11.8 0.1 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain MoeA_N PF03453.17 CQR56182.1 - 4.3e-42 143.6 0.8 6.4e-42 143.0 0.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 CQR56182.1 - 4.7e-24 84.7 0.0 7.9e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 CQR56182.1 - 2.2e-14 53.3 0.6 2.1e-13 50.3 0.0 2.8 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) DUF4178 PF13785.6 CQR56184.1 - 5.9e-26 91.3 2.7 6.7e-26 91.1 2.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4178) DUF350 PF03994.14 CQR56185.1 - 1e-10 41.6 6.1 1.3e-09 38.0 0.0 2.4 2 1 0 2 2 2 2 Domain of Unknown Function (DUF350) PspA_IM30 PF04012.12 CQR56186.1 - 9.2e-51 172.5 34.4 1e-50 172.4 34.4 1.0 1 0 0 1 1 1 1 PspA/IM30 family PRKG1_interact PF15898.5 CQR56186.1 - 0.00068 20.5 7.1 0.00068 20.5 7.1 2.6 2 1 0 2 2 2 1 cGMP-dependent protein kinase interacting domain TolA_bind_tri PF16331.5 CQR56186.1 - 0.0033 17.5 1.1 0.0033 17.5 1.1 3.0 3 1 0 3 3 3 1 TolA binding protein trimerisation CAMSAP_CC1 PF17095.5 CQR56186.1 - 0.011 15.5 0.4 0.011 15.5 0.4 2.7 3 0 0 3 3 3 0 Spectrin-binding region of Ca2+-Calmodulin Spc7 PF08317.11 CQR56186.1 - 0.18 10.6 21.6 0.11 11.3 20.0 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF948 PF06103.11 CQR56186.1 - 0.72 10.2 7.6 8.2 6.8 0.9 3.1 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Osmo_CC PF08946.10 CQR56186.1 - 1 9.7 0.0 1 9.7 0.0 3.5 4 0 0 4 4 4 0 Osmosensory transporter coiled coil V_ATPase_I PF01496.19 CQR56186.1 - 1.1 7.1 18.0 9.2 4.0 16.9 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family KxDL PF10241.9 CQR56186.1 - 2.9 8.2 14.8 3.6 7.9 6.6 3.5 2 1 1 3 3 3 0 Uncharacterized conserved protein Atg14 PF10186.9 CQR56186.1 - 3.2 6.8 14.1 4.3 6.3 14.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 COG2 PF06148.11 CQR56186.1 - 3.8 7.6 11.8 3.3 7.8 1.4 2.8 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 CHDCT2 PF08074.11 CQR56186.1 - 4.8 7.3 10.0 1.5 9.0 5.6 2.1 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain Fib_alpha PF08702.10 CQR56186.1 - 8.5 6.6 13.3 20 5.4 2.9 2.8 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family DHO_dh PF01180.21 CQR56188.1 - 1.5e-65 221.4 0.4 1.9e-65 221.0 0.4 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 CQR56188.1 - 1.2e-06 28.1 4.6 0.0001 21.8 1.7 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 CQR56188.1 - 4e-06 26.1 1.9 0.0096 15.0 0.3 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) FMN_dh PF01070.18 CQR56188.1 - 0.00014 21.0 0.7 0.00069 18.7 0.7 1.9 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 CQR56188.1 - 0.00027 20.5 0.4 0.001 18.6 0.4 2.0 1 1 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 CQR56188.1 - 0.001 18.2 1.6 0.0011 18.1 0.4 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.12 CQR56188.1 - 0.0016 17.7 2.6 0.013 14.6 0.6 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 CQR56188.1 - 0.034 13.6 0.5 0.085 12.3 0.2 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 CQR56188.1 - 0.07 12.5 0.2 0.07 12.5 0.2 1.7 2 0 0 2 2 2 0 Thiamine monophosphate synthase RHIM PF12721.7 CQR56188.1 - 0.14 12.7 0.1 0.27 11.7 0.1 1.5 1 0 0 1 1 1 0 RIP homotypic interaction motif DHODB_Fe-S_bind PF10418.9 CQR56189.1 - 2.1e-14 53.0 3.9 4.8e-14 51.9 3.9 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 CQR56189.1 - 0.0052 17.4 0.1 1.2 9.8 0.0 2.2 2 0 0 2 2 2 2 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 CQR56189.1 - 0.0052 17.1 0.0 0.0082 16.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Oxidored_FMN PF00724.20 CQR56190.1 - 4.2e-68 230.1 0.0 5.4e-68 229.8 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 CQR56190.1 - 0.00026 20.2 0.0 0.00057 19.1 0.0 1.6 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF1769 PF08588.10 CQR56190.1 - 0.18 12.0 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1769) Polysacc_deac_1 PF01522.21 CQR56191.1 - 9.2e-35 119.2 0.0 2e-34 118.2 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase 3D PF06725.11 CQR56193.1 - 2e-16 59.9 0.2 5.7e-16 58.5 0.1 1.9 2 0 0 2 2 2 1 3D domain LysM PF01476.20 CQR56193.1 - 1.8e-08 34.3 0.1 4e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 LysM domain P22_Cro PF14549.6 CQR56193.1 - 0.16 11.8 1.3 3 7.8 0.2 2.7 3 0 0 3 3 3 0 DNA-binding transcriptional regulator Cro PP_kinase_C_1 PF17941.1 CQR56194.1 - 2.8e-75 251.4 0.4 5.6e-75 250.5 0.1 1.7 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 CQR56194.1 - 4.2e-71 237.9 0.2 3.7e-70 234.8 0.0 2.4 3 0 0 3 3 3 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 CQR56194.1 - 1.8e-63 213.8 0.1 2.9e-63 213.1 0.1 1.4 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 CQR56194.1 - 4.7e-35 120.2 0.0 1.1e-34 119.0 0.0 1.7 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 CQR56194.1 - 5.5e-13 49.0 0.0 3.4e-06 27.0 0.0 2.7 2 1 0 2 2 2 2 PLD-like domain Ppx-GppA PF02541.16 CQR56195.1 - 1.5e-51 175.6 0.0 2.3e-51 174.9 0.0 1.3 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 CQR56195.1 - 0.00033 21.0 1.0 1.6 9.2 0.5 2.9 2 1 0 2 2 2 2 Cell division protein FtsA ABC_tran PF00005.27 CQR56196.1 - 3.3e-37 128.0 0.0 4.3e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56196.1 - 3.1e-14 53.5 0.0 1.4e-06 28.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56196.1 - 2.4e-09 37.0 0.3 1.1e-05 25.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR56196.1 - 2.1e-06 27.7 0.0 0.0039 17.0 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 CQR56196.1 - 7e-05 22.5 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR56196.1 - 0.0002 21.8 0.1 0.00032 21.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR56196.1 - 0.00025 21.3 0.1 0.00086 19.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR56196.1 - 0.00038 21.0 0.1 0.00057 20.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR56196.1 - 0.001 18.0 0.3 1.4 7.6 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 CQR56196.1 - 0.0019 18.1 0.3 0.0057 16.6 0.1 1.8 1 1 1 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 CQR56196.1 - 0.0028 17.8 0.1 0.0038 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 CQR56196.1 - 0.0065 15.2 0.0 0.14 10.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 CQR56196.1 - 0.0071 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR56196.1 - 0.013 15.2 0.1 0.022 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 CQR56196.1 - 0.02 14.0 0.0 0.02 14.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SbcCD_C PF13558.6 CQR56196.1 - 0.021 15.1 0.1 0.28 11.4 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.18 CQR56196.1 - 0.034 13.5 0.2 0.069 12.5 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 CQR56196.1 - 0.037 13.6 0.0 0.098 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain CobU PF02283.16 CQR56196.1 - 0.048 13.2 0.0 2.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase NACHT PF05729.12 CQR56196.1 - 0.053 13.4 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 CQR56196.1 - 0.059 12.4 0.0 0.099 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 CQR56196.1 - 0.067 12.6 0.1 0.3 10.5 0.0 2.0 1 1 2 3 3 3 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 CQR56196.1 - 0.087 12.5 0.0 0.38 10.4 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.6 CQR56196.1 - 0.088 13.1 0.2 0.13 12.6 0.2 1.4 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 CQR56196.1 - 0.12 12.3 0.0 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 CQR56196.1 - 0.13 12.8 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR56196.1 - 0.15 12.2 0.1 0.24 11.5 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 CQR56196.1 - 0.15 12.5 0.4 3.1 8.2 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 CQR56196.1 - 0.16 11.9 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 CQR56196.1 - 0.2 11.9 0.0 0.56 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 CQR56197.1 - 2.8e-22 79.4 11.7 2.8e-22 79.4 11.7 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 CQR56198.1 - 3.3e-54 183.7 0.9 4e-54 183.4 0.9 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 CQR56198.1 - 4.9e-05 23.5 0.0 0.00049 20.3 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site LpxI_N PF17930.1 CQR56198.1 - 0.0093 15.9 0.1 0.044 13.7 0.0 1.9 2 0 0 2 2 2 1 LpxI N-terminal domain Alpha-amylase PF00128.24 CQR56200.1 - 5.6e-79 266.1 0.0 3e-78 263.7 0.0 2.1 2 0 0 2 2 2 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 CQR56200.1 - 6.4e-33 113.5 1.7 6.4e-33 113.5 1.7 1.8 2 0 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain Malt_amylase_C PF16657.5 CQR56200.1 - 1.3e-11 44.5 0.0 2.7e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 CQR56200.1 - 0.0001 21.6 0.0 0.00016 20.9 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain Glyco_hydro_42C PF08533.10 CQR56200.1 - 0.0032 17.2 0.0 0.0069 16.1 0.0 1.6 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain GHL6 PF14871.6 CQR56200.1 - 0.024 14.8 0.0 0.048 13.8 0.0 1.6 1 1 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 DUF3459 PF11941.8 CQR56200.1 - 0.043 14.2 0.0 0.073 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Glyco_transf_5 PF08323.11 CQR56201.1 - 1e-88 297.2 0.0 1.9e-88 296.3 0.0 1.5 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 CQR56201.1 - 5.7e-13 48.8 0.0 9.6e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR56201.1 - 1.6e-10 41.2 0.2 1.3e-09 38.3 0.0 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 CQR56201.1 - 9.5e-09 35.8 0.0 1.8e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 CQR56201.1 - 1.2e-07 32.3 0.0 2.8e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Alpha-amylase_C PF02806.18 CQR56202.1 - 1e-21 77.2 0.0 2e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain CBM_48 PF02922.18 CQR56202.1 - 2e-17 63.3 0.1 5.4e-17 61.9 0.1 1.8 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 CQR56202.1 - 4.2e-10 39.7 0.1 1.5e-06 28.0 0.1 2.2 2 0 0 2 2 2 2 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 CQR56202.1 - 0.062 11.5 0.0 0.092 10.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 NTP_transferase PF00483.23 CQR56203.1 - 3.1e-71 239.9 0.0 3.9e-71 239.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR56203.1 - 4.5e-06 27.1 0.0 1.4e-05 25.6 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 CQR56203.1 - 6.4e-05 22.5 6.4 0.006 16.3 5.1 2.8 1 1 1 2 2 2 2 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 CQR56203.1 - 0.014 13.6 0.5 0.023 12.9 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 CQR56203.1 - 0.089 11.7 0.1 1.3 7.9 0.0 2.0 2 0 0 2 2 2 0 L-fucokinase HATPase_c PF02518.26 CQR56204.1 - 2e-25 89.5 0.2 4.5e-25 88.3 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56204.1 - 7.9e-14 51.4 0.0 2e-13 50.2 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR56204.1 - 5.2e-12 46.0 0.0 9.5e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR56204.1 - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR56205.1 - 8.1e-27 93.6 0.1 1.4e-26 92.9 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56205.1 - 3.1e-25 88.0 0.0 6.5e-25 87.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR56205.1 - 0.0027 18.0 0.0 0.005 17.1 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain VCBS PF13517.6 CQR56206.1 - 8.9e-08 32.6 7.1 0.19 12.3 0.0 4.6 4 0 0 4 4 4 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 CQR56206.1 - 1.4e-05 25.1 2.3 0.1 12.7 0.1 4.1 4 0 0 4 4 4 3 FG-GAP repeat ABC_tran PF00005.27 CQR56207.1 - 7.1e-31 107.6 0.1 9.1e-31 107.2 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56207.1 - 6.1e-07 29.6 0.1 0.0032 17.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56207.1 - 8.6e-07 29.3 0.2 8.3e-06 26.1 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR56207.1 - 1.4e-05 25.5 0.1 2.4e-05 24.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 CQR56207.1 - 2.2e-05 24.0 0.1 0.00022 20.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 CQR56207.1 - 3.8e-05 23.3 0.0 0.0038 16.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 CQR56207.1 - 0.00015 21.9 0.1 0.0015 18.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR56207.1 - 0.00031 20.7 0.0 0.00071 19.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR56207.1 - 0.00079 19.1 0.1 0.0021 17.7 0.0 1.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_28 PF13521.6 CQR56207.1 - 0.00082 19.6 0.0 0.017 15.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 CQR56207.1 - 0.00093 19.1 0.1 0.0085 16.0 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.6 CQR56207.1 - 0.0033 17.9 0.0 0.0071 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR56207.1 - 0.0048 17.5 0.1 0.02 15.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR56207.1 - 0.015 15.1 0.2 0.056 13.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 CQR56207.1 - 0.025 13.4 0.0 4 6.1 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class CPT PF07931.12 CQR56207.1 - 0.027 14.3 0.0 0.082 12.7 0.0 1.8 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein MMR_HSR1 PF01926.23 CQR56207.1 - 0.03 14.4 0.1 0.14 12.2 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 CQR56207.1 - 0.042 13.2 0.1 0.098 12.0 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family NTPase_1 PF03266.15 CQR56207.1 - 0.058 13.3 0.0 0.71 9.8 0.0 2.1 2 0 0 2 2 2 0 NTPase Cas_VVA1548 PF09652.10 CQR56207.1 - 0.15 12.3 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative CRISPR-associated protein (Cas_VVA1548) G-alpha PF00503.20 CQR56207.1 - 0.15 11.1 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MFS_1 PF07690.16 CQR56208.1 - 3.5e-43 147.9 60.4 2.4e-23 82.6 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR56208.1 - 1.1e-12 47.5 17.8 1.7e-06 27.2 8.2 2.2 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 CQR56208.1 - 3.4e-07 29.5 22.6 1.1e-06 27.8 6.6 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 CQR56208.1 - 0.00062 19.2 21.7 0.0017 17.7 21.7 1.7 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_2 PF13347.6 CQR56208.1 - 0.0011 17.7 17.2 0.0088 14.6 1.0 2.7 3 0 0 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.13 CQR56208.1 - 0.0045 15.4 3.8 0.0045 15.4 3.8 2.5 1 1 2 3 3 3 3 Transmembrane secretion effector HTH_20 PF12840.7 CQR56209.1 - 4.3e-06 26.7 1.6 8e-06 25.8 1.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR56209.1 - 0.00073 19.4 0.1 0.0014 18.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HAD_2 PF13419.6 CQR56210.1 - 2.6e-15 57.0 3.0 8.1e-15 55.3 3.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR56210.1 - 9.5e-08 32.6 0.1 1.3e-06 28.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR56210.1 - 5.3e-06 26.4 0.0 8.9e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR56210.1 - 7.3e-06 26.5 0.1 1.3e-05 25.7 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 CQR56210.1 - 0.0035 17.1 0.3 0.62 9.8 0.0 2.1 2 0 0 2 2 2 2 NLI interacting factor-like phosphatase Acid_phosphat_B PF03767.14 CQR56210.1 - 0.064 12.8 0.3 5.2 6.6 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 CQR56210.1 - 0.074 13.2 0.3 0.35 11.0 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Thioredoxin_4 PF13462.6 CQR56211.1 - 5.6e-37 127.4 0.1 6.8e-37 127.2 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 CQR56211.1 - 2.2e-09 37.4 1.0 2.5e-07 30.7 0.0 2.2 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 CQR56211.1 - 5.6e-06 26.2 0.0 8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 CQR56211.1 - 0.0078 16.7 1.9 0.091 13.2 1.9 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 CQR56211.1 - 0.014 15.4 0.1 0.28 11.2 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin domain FtsH_ext PF06480.15 CQR56211.1 - 0.076 13.4 0.0 0.41 11.0 0.0 2.0 1 1 0 2 2 2 0 FtsH Extracellular Retrotran_gag_2 PF14223.6 CQR56211.1 - 0.14 11.8 0.1 0.33 10.6 0.2 1.5 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type Topoisom_bac PF01131.20 CQR56212.1 - 5.1e-120 401.3 5.6 6.4e-120 400.9 5.6 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 CQR56212.1 - 1.4e-10 41.4 0.0 8.9e-10 38.7 0.0 2.5 2 0 0 2 2 2 1 Toprim domain Toprim_Crpt PF13342.6 CQR56212.1 - 1.7e-10 40.7 0.5 8.2e-10 38.5 0.1 2.3 2 0 0 2 2 2 1 C-terminal repeat of topoisomerase tRNA-synt_2b PF00587.25 CQR56213.1 - 2.7e-52 177.3 0.0 5.1e-52 176.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA_edit PF04073.15 CQR56213.1 - 2.1e-25 89.2 0.0 3.8e-25 88.4 0.0 1.5 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HGTP_anticodon PF03129.20 CQR56213.1 - 7.1e-15 54.9 1.0 1.8e-14 53.6 0.2 2.1 2 0 0 2 2 2 1 Anticodon binding domain DNA_pol_lambd_f PF10391.9 CQR56213.1 - 0.038 13.8 0.1 2.4 8.0 0.0 3.5 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda TIR_2 PF13676.6 CQR56213.1 - 0.13 12.9 0.0 0.43 11.2 0.0 1.8 2 0 0 2 2 2 0 TIR domain MCPsignal PF00015.21 CQR56214.1 - 1.6e-36 125.7 24.7 1.6e-36 125.7 24.7 4.2 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR56214.1 - 4.8e-21 75.7 0.3 4.8e-21 75.7 0.3 3.3 3 2 0 3 3 3 1 Cache domain HAMP PF00672.25 CQR56214.1 - 1.6e-12 47.6 2.6 3.3e-11 43.4 0.1 4.1 3 1 1 4 4 4 1 HAMP domain Cache_3-Cache_2 PF17201.4 CQR56214.1 - 8e-07 28.6 0.0 8e-07 28.6 0.0 4.1 3 1 2 5 5 5 1 Cache 3/Cache 2 fusion domain dCache_2 PF08269.11 CQR56214.1 - 0.00064 19.0 0.0 0.00064 19.0 0.0 3.4 4 1 0 4 4 4 1 Cache domain sCache_2 PF17200.4 CQR56214.1 - 0.00065 19.6 0.0 0.0035 17.2 0.0 2.3 1 0 0 1 1 1 1 Single Cache domain 2 DUF948 PF06103.11 CQR56214.1 - 0.0041 17.4 27.7 2 8.7 1.4 6.5 3 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) DASH_Dad2 PF08654.10 CQR56214.1 - 0.0053 17.1 3.8 0.0053 17.1 3.8 5.0 4 1 1 5 5 5 2 DASH complex subunit Dad2 Sigma70_ner PF04546.13 CQR56214.1 - 0.0087 16.0 2.3 0.0087 16.0 2.3 2.6 3 0 0 3 3 3 1 Sigma-70, non-essential region NPV_P10 PF05531.12 CQR56214.1 - 0.054 14.0 1.0 0.054 14.0 1.0 5.1 6 1 1 7 7 5 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 CQR56214.1 - 0.22 11.5 33.6 0.58 10.2 6.2 4.9 3 2 2 5 5 5 0 Laminin Domain II Macscav_rec PF03523.13 CQR56214.1 - 0.32 10.9 6.3 0.98 9.4 0.4 3.6 2 1 1 3 3 3 0 Macrophage scavenger receptor Ly49 PF08391.10 CQR56214.1 - 0.67 10.3 2.3 13 6.1 0.2 3.1 2 1 0 2 2 2 0 Ly49-like protein, N-terminal region GspL_C PF12693.7 CQR56214.1 - 5.4 6.8 9.6 0.44 10.4 0.2 3.3 4 0 0 4 4 4 0 GspL periplasmic domain Pyr_redox_2 PF07992.14 CQR56215.1 - 7e-23 81.3 1.2 2.1e-22 79.7 1.2 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 CQR56215.1 - 8e-20 70.7 0.0 1.3e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NAD_binding_8 PF13450.6 CQR56215.1 - 5.1e-11 42.6 1.3 1.4e-10 41.2 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 CQR56215.1 - 6.3e-10 39.5 0.9 1.8e-06 28.4 0.4 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR56215.1 - 8.3e-09 35.3 3.0 4.3e-08 32.9 0.2 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 CQR56215.1 - 2.9e-08 33.7 1.4 0.00013 21.7 0.5 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Amino_oxidase PF01593.24 CQR56215.1 - 3.4e-08 33.2 1.5 1.2e-07 31.4 0.1 2.5 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 CQR56215.1 - 3.1e-07 29.9 0.4 0.00044 19.6 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR56215.1 - 1.4e-06 27.3 1.2 6.8e-06 25.0 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 CQR56215.1 - 6e-06 25.6 0.3 6e-06 25.6 0.3 1.7 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 CQR56215.1 - 1.7e-05 24.2 1.1 8.5e-05 21.9 0.1 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 CQR56215.1 - 3.3e-05 23.2 1.6 0.0025 17.0 0.2 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 CQR56215.1 - 3.4e-05 23.3 0.0 8.2e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 CQR56215.1 - 0.00016 22.1 0.1 0.048 14.1 0.1 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 CQR56215.1 - 0.0015 17.9 0.4 0.12 11.7 0.1 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain YjeF_N PF03853.15 CQR56215.1 - 0.0015 18.4 0.2 0.16 11.8 0.0 2.4 2 0 0 2 2 2 1 YjeF-related protein N-terminus FMO-like PF00743.19 CQR56215.1 - 0.0016 17.0 0.1 0.011 14.1 0.0 2.0 1 1 1 2 2 2 1 Flavin-binding monooxygenase-like ApbA PF02558.16 CQR56215.1 - 0.0044 16.7 0.1 0.0087 15.7 0.1 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 CQR56215.1 - 0.006 16.0 0.0 0.072 12.5 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 CQR56215.1 - 0.0072 16.4 3.5 2.2 8.3 0.1 2.6 3 0 0 3 3 2 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lycopene_cycl PF05834.12 CQR56215.1 - 0.0075 15.4 0.2 0.015 14.4 0.2 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 CQR56215.1 - 0.014 15.4 0.2 0.036 14.0 0.1 1.8 1 1 1 2 2 2 0 FAD-NAD(P)-binding DJ-1_PfpI PF01965.24 CQR56215.1 - 0.041 13.7 5.0 0.8 9.5 0.2 3.1 1 1 1 3 3 3 0 DJ-1/PfpI family NAD_Gly3P_dh_N PF01210.23 CQR56215.1 - 0.047 13.7 0.1 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 CQR56215.1 - 0.059 13.6 0.1 0.94 9.8 0.0 2.6 2 1 1 3 3 3 0 TrkA-N domain DNA_pol_E_B PF04042.16 CQR56215.1 - 0.066 12.6 0.0 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase alpha/epsilon subunit B 3HCDH_N PF02737.18 CQR56215.1 - 0.079 12.8 0.8 0.17 11.8 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 CQR56215.1 - 0.082 12.5 0.1 0.2 11.2 0.1 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 CQR56215.1 - 0.1 12.7 0.1 4.6 7.3 0.1 2.5 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 CQR56215.1 - 0.12 12.5 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.14 CQR56215.1 - 0.14 11.0 2.1 0.091 11.6 0.3 1.5 2 0 0 2 2 2 0 Tryptophan halogenase K_oxygenase PF13434.6 CQR56215.1 - 0.18 10.9 0.0 12 5.0 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DHFR_1 PF00186.19 CQR56216.1 - 5.8e-63 211.4 0.0 6.5e-63 211.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.19 CQR56217.1 - 2.8e-123 410.3 0.0 3.1e-123 410.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Abhydrolase_1 PF00561.20 CQR56218.1 - 9.5e-17 61.5 0.0 9.8e-12 45.1 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 CQR56218.1 - 1.5e-15 57.1 0.0 7e-15 54.9 0.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR56218.1 - 3.3e-10 41.0 0.0 4.2e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 CQR56218.1 - 0.0003 20.7 0.2 0.00094 19.0 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase FSH1 PF03959.13 CQR56218.1 - 0.002 17.8 0.0 0.0032 17.1 0.0 1.4 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.21 CQR56218.1 - 0.019 14.4 0.1 0.26 10.7 0.0 2.4 2 1 1 3 3 3 0 Prolyl oligopeptidase family Say1_Mug180 PF10340.9 CQR56218.1 - 0.054 12.3 0.0 0.14 10.9 0.0 1.6 2 0 0 2 2 2 0 Steryl acetyl hydrolase Ndr PF03096.14 CQR56218.1 - 0.059 12.1 0.0 0.087 11.5 0.0 1.5 1 1 0 1 1 1 0 Ndr family Pyr_redox_2 PF07992.14 CQR56219.1 - 1.8e-69 234.2 1.5 1.8e-69 234.2 1.5 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 CQR56219.1 - 5.3e-36 123.2 0.1 5.3e-36 123.2 0.1 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 CQR56219.1 - 5e-23 81.5 9.9 4.3e-21 75.3 0.8 3.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 CQR56219.1 - 6.4e-11 41.9 5.5 7.3e-10 38.5 0.1 2.9 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 CQR56219.1 - 6.1e-10 38.8 4.4 1.9e-09 37.2 4.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR56219.1 - 2.1e-09 37.2 1.7 2.7e-07 30.3 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR56219.1 - 4.1e-08 32.9 8.8 0.0053 16.0 0.1 3.3 2 1 1 3 3 3 3 FAD binding domain FAD_binding_2 PF00890.24 CQR56219.1 - 1.2e-06 27.9 10.8 3.1e-06 26.6 1.4 3.5 3 2 1 4 4 4 2 FAD binding domain HI0933_like PF03486.14 CQR56219.1 - 7.9e-06 24.8 8.8 8.7e-05 21.4 0.8 3.6 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 CQR56219.1 - 3.3e-05 24.0 4.9 0.00043 20.4 0.7 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 CQR56219.1 - 0.00069 19.2 6.6 0.14 11.7 2.2 2.7 2 1 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 CQR56219.1 - 0.0043 16.4 10.0 0.081 12.2 1.1 3.7 3 1 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 CQR56219.1 - 0.014 15.0 8.4 0.27 10.8 0.4 3.3 3 0 0 3 3 3 0 FAD dependent oxidoreductase TrkA_N PF02254.18 CQR56219.1 - 0.037 14.3 1.3 4.8 7.5 0.1 2.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 CQR56219.1 - 0.047 14.1 1.8 3.3 8.2 0.2 2.8 2 1 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 CQR56219.1 - 0.056 13.3 4.0 0.76 9.6 0.8 2.7 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 CQR56219.1 - 0.092 13.3 1.4 6.1 7.4 0.0 3.0 3 0 0 3 3 3 0 XdhC Rossmann domain Lycopene_cycl PF05834.12 CQR56219.1 - 0.29 10.1 6.1 3 6.8 0.4 3.0 2 1 1 3 3 3 0 Lycopene cyclase protein Thi4 PF01946.17 CQR56219.1 - 0.31 10.3 4.5 0.24 10.6 0.2 2.6 2 1 0 3 3 3 0 Thi4 family 2-Hacid_dh_C PF02826.19 CQR56219.1 - 1.7 8.0 6.7 4.2 6.7 0.7 2.9 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-oxoacid_dh PF00198.23 CQR56220.1 - 6.8e-92 307.1 1.3 1e-91 306.6 0.5 1.6 2 0 0 2 2 2 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 CQR56220.1 - 9.3e-35 118.3 13.8 9.1e-18 63.9 2.5 2.8 3 0 0 3 3 3 2 Biotin-requiring enzyme E3_binding PF02817.17 CQR56220.1 - 2.2e-14 53.5 0.7 5.3e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 e3 binding domain GCV_H PF01597.19 CQR56220.1 - 1e-07 31.8 2.5 0.011 15.7 0.2 2.6 2 0 0 2 2 2 2 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 CQR56220.1 - 5.7e-07 29.3 11.0 0.008 16.0 0.1 4.3 4 0 0 4 4 4 2 Biotin-lipoyl like NQRA PF05896.11 CQR56220.1 - 7.2e-05 22.3 3.1 0.13 11.7 0.3 2.2 2 0 0 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ATP-synt_ab_Xtn PF16886.5 CQR56220.1 - 0.0018 18.1 7.3 0.34 10.8 0.8 2.5 2 0 0 2 2 2 2 ATPsynthase alpha/beta subunit N-term extension HlyD_D23 PF16576.5 CQR56220.1 - 0.0071 15.6 2.1 0.75 9.0 0.1 3.4 2 2 1 3 3 3 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion PYNP_C PF07831.13 CQR56220.1 - 0.02 14.6 2.6 5.6 6.7 0.3 3.0 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain HlyD_2 PF12700.7 CQR56220.1 - 0.02 13.7 6.4 2.1 7.0 0.3 3.1 3 0 0 3 3 3 0 HlyD family secretion protein PTS_EIIA_1 PF00358.20 CQR56220.1 - 0.029 14.1 3.8 14 5.5 0.1 4.0 2 2 2 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QRPTase_N PF02749.16 CQR56220.1 - 0.033 14.2 5.4 23 5.1 0.1 4.5 2 2 2 4 4 4 0 Quinolinate phosphoribosyl transferase, N-terminal domain HlyD_3 PF13437.6 CQR56220.1 - 0.071 13.8 12.7 0.58 10.9 0.3 5.2 4 2 2 6 6 6 0 HlyD family secretion protein Transket_pyr PF02779.24 CQR56221.1 - 2.6e-42 144.5 0.0 3.9e-42 143.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 CQR56221.1 - 2.2e-41 140.6 1.1 3.4e-41 140.0 1.1 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 CQR56221.1 - 0.00013 22.2 0.1 0.00023 21.4 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II DUF4241 PF14025.6 CQR56221.1 - 0.046 14.0 0.0 0.078 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4241) E1_dh PF00676.20 CQR56222.1 - 7.4e-97 323.9 0.0 8.5e-97 323.7 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 CQR56222.1 - 2.5e-05 24.1 3.3 0.0001 22.1 1.3 2.4 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 CQR56222.1 - 5.7e-05 22.5 0.5 0.00012 21.4 0.1 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase HupE_UreJ PF04955.12 CQR56222.1 - 0.018 14.5 0.1 0.034 13.6 0.1 1.3 1 0 0 1 1 1 0 HupE / UreJ protein Esterase PF00756.20 CQR56223.1 - 4.1e-40 138.0 0.0 7.6e-40 137.1 0.0 1.4 1 1 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.16 CQR56223.1 - 2.9e-05 24.0 0.0 4.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 CQR56223.1 - 0.0071 15.6 0.0 0.0093 15.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 LMWPc PF01451.21 CQR56224.1 - 9.1e-37 126.6 0.0 1e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase TPK_catalytic PF04263.16 CQR56225.1 - 2e-21 76.2 0.0 2.6e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain TPK_B1_binding PF04265.14 CQR56225.1 - 4.4e-16 58.3 0.1 8.1e-16 57.5 0.1 1.5 1 1 0 1 1 1 1 Thiamin pyrophosphokinase, vitamin B1 binding domain MAF_flag10 PF01973.18 CQR56225.1 - 0.00075 19.2 0.0 0.2 11.3 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function DUF115 NLPC_P60 PF00877.19 CQR56226.1 - 1.7e-27 95.5 0.0 2.2e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 NlpC/P60 family Peptidase_C92 PF05708.12 CQR56226.1 - 6.3e-05 23.1 0.0 0.0086 16.2 0.0 2.1 1 1 1 2 2 2 2 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CHAP PF05257.16 CQR56226.1 - 0.0015 19.1 0.0 0.0025 18.3 0.0 1.5 1 0 0 1 1 1 1 CHAP domain Amidase_5 PF05382.13 CQR56226.1 - 0.012 15.5 1.2 0.023 14.6 1.1 1.6 1 1 0 1 1 1 0 Bacteriophage peptidoglycan hydrolase Internalin_N PF12354.8 CQR56226.1 - 0.013 15.6 0.3 0.025 14.6 0.3 1.5 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal Trans_reg_C PF00486.28 CQR56227.1 - 4.4e-27 94.0 0.0 8e-27 93.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR56227.1 - 2.8e-07 30.7 0.0 7.9e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain ThiF PF00899.21 CQR56228.1 - 1.2e-55 188.5 0.0 1.7e-55 188.1 0.0 1.1 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 CQR56228.1 - 0.00017 21.9 0.3 0.0011 19.2 0.3 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 CQR56228.1 - 0.00087 19.4 0.1 0.0019 18.3 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 CQR56228.1 - 0.0017 17.8 0.2 0.0034 16.8 0.2 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.10 CQR56228.1 - 0.0057 16.6 0.1 0.0096 15.9 0.1 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 CQR56228.1 - 0.0068 16.3 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 CQR56228.1 - 0.041 14.3 0.2 0.29 11.6 0.2 2.2 1 1 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 CQR56228.1 - 0.052 13.2 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 CQR56228.1 - 0.058 13.0 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 CQR56228.1 - 0.1 13.2 0.1 0.22 12.1 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ABC_tran PF00005.27 CQR56229.1 - 3.7e-48 163.5 3.4 5.6e-26 91.7 0.1 3.3 3 1 0 3 3 3 2 ABC transporter ABC_tran_Xtn PF12848.7 CQR56229.1 - 5.1e-24 84.1 8.3 9.2e-24 83.3 8.3 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56229.1 - 1.2e-12 48.3 9.3 0.014 15.2 0.1 4.6 4 1 0 5 5 5 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56229.1 - 8.8e-12 44.9 2.2 0.0018 17.7 0.0 4.3 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 CQR56229.1 - 4.6e-09 36.4 0.0 0.00022 21.3 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 CQR56229.1 - 1.2e-07 31.8 0.7 0.0018 18.2 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase AAA_23 PF13476.6 CQR56229.1 - 2.3e-07 31.5 3.5 0.24 11.9 0.0 3.5 3 0 0 3 3 3 3 AAA domain AAA_22 PF13401.6 CQR56229.1 - 1.1e-06 29.0 0.2 0.058 13.7 0.0 3.3 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 CQR56229.1 - 2.6e-06 27.9 0.0 0.0088 16.4 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 CQR56229.1 - 5.2e-06 26.1 4.3 0.046 13.5 0.1 3.2 4 0 0 4 4 2 2 P-loop containing region of AAA domain AAA_28 PF13521.6 CQR56229.1 - 7.6e-06 26.3 0.3 0.22 11.7 0.0 3.1 2 1 0 2 2 2 2 AAA domain MeaB PF03308.16 CQR56229.1 - 4.4e-05 22.6 1.9 0.02 13.9 0.0 2.7 3 0 0 3 3 3 2 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 CQR56229.1 - 8.3e-05 22.9 0.5 0.069 13.6 0.0 3.1 3 1 1 4 4 2 1 RNA helicase AAA_24 PF13479.6 CQR56229.1 - 0.00014 21.7 1.0 0.096 12.4 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA_14 PF13173.6 CQR56229.1 - 0.00029 20.9 1.7 3.4 7.7 0.0 4.3 3 1 0 3 3 3 1 AAA domain PduV-EutP PF10662.9 CQR56229.1 - 0.0008 19.2 1.0 1.2 8.9 0.0 3.3 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.12 CQR56229.1 - 0.001 19.0 0.5 0.77 9.7 0.1 2.6 2 0 0 2 2 2 1 NACHT domain AAA_15 PF13175.6 CQR56229.1 - 0.0016 18.2 4.9 0.92 9.1 0.1 3.0 2 1 0 2 2 2 2 AAA ATPase domain FeoB_N PF02421.18 CQR56229.1 - 0.0018 17.8 1.0 0.3 10.6 0.1 2.8 3 0 0 3 3 2 1 Ferrous iron transport protein B AAA_7 PF12775.7 CQR56229.1 - 0.0028 17.2 0.6 1.9 7.9 0.1 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region Septin PF00735.18 CQR56229.1 - 0.0054 16.0 0.3 1.5 8.0 0.0 2.4 2 0 0 2 2 2 1 Septin AAA_25 PF13481.6 CQR56229.1 - 0.0055 16.3 0.1 4.1 6.9 0.0 2.9 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 CQR56229.1 - 0.0063 16.3 0.0 2.9 7.6 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.6 CQR56229.1 - 0.0065 16.6 4.2 6 7.0 0.0 4.0 3 1 1 4 4 4 0 AAA domain DUF87 PF01935.17 CQR56229.1 - 0.0066 16.6 7.6 0.036 14.1 0.3 3.1 3 0 0 3 3 3 1 Helicase HerA, central domain NTPase_1 PF03266.15 CQR56229.1 - 0.0069 16.3 1.2 3.9 7.3 0.1 2.6 2 0 0 2 2 2 1 NTPase Roc PF08477.13 CQR56229.1 - 0.0069 16.6 0.3 5.7 7.2 0.1 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ATP-synt_ab PF00006.25 CQR56229.1 - 0.0089 15.7 0.2 1.5 8.5 0.1 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 CQR56229.1 - 0.014 15.2 0.2 3.4 7.3 0.0 2.7 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 CQR56229.1 - 0.02 14.3 0.0 2.8 7.3 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 CQR56229.1 - 0.02 15.4 7.3 0.31 11.6 0.0 3.4 3 1 0 3 3 2 0 AAA domain Dynamin_N PF00350.23 CQR56229.1 - 0.026 14.6 4.7 2.4 8.2 0.3 3.6 3 1 0 3 3 3 0 Dynamin family AAA_5 PF07728.14 CQR56229.1 - 0.027 14.4 0.5 4.7 7.2 0.1 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 CQR56229.1 - 0.028 13.4 0.2 5.2 5.9 0.0 2.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.22 CQR56229.1 - 0.03 13.5 7.4 0.6 9.3 0.1 3.1 4 1 0 4 4 3 0 NB-ARC domain FtsK_SpoIIIE PF01580.18 CQR56229.1 - 0.031 13.7 0.2 6.6 6.0 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family MukB PF04310.12 CQR56229.1 - 0.034 14.0 0.8 1.1 9.0 0.0 2.8 3 0 0 3 3 3 0 MukB N-terminal Ploopntkinase3 PF18751.1 CQR56229.1 - 0.056 13.3 0.1 1.2 9.1 0.0 2.5 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 MobB PF03205.14 CQR56229.1 - 0.087 12.7 1.1 13 5.7 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.13 CQR56229.1 - 0.091 11.9 4.5 3.1 6.9 0.1 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF815) T2SSE PF00437.20 CQR56229.1 - 0.1 11.6 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein SRP54 PF00448.22 CQR56229.1 - 0.3 10.7 3.9 20 4.8 0.1 3.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 CQR56229.1 - 2.6 7.8 4.1 3 7.6 0.1 2.7 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop cobW PF02492.19 CQR56229.1 - 8.5 5.9 6.6 25 4.4 0.2 3.1 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 CQR56229.1 - 9.9 3.5 9.2 1.4 6.3 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) Pkinase PF00069.25 CQR56230.1 - 7.3e-32 110.8 0.0 1.4e-31 109.8 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 CQR56230.1 - 4.3e-17 62.2 0.0 6.6e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 CQR56230.1 - 0.0023 17.9 3.3 0.17 11.8 0.1 3.4 3 1 1 4 4 4 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 CQR56230.1 - 0.0028 16.5 0.0 0.004 16.0 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase FtsJ PF01728.19 CQR56231.1 - 1e-13 51.8 0.0 2e-13 50.8 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 CQR56231.1 - 2.6e-07 31.2 0.0 6.2e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR56231.1 - 2.5e-05 24.8 0.0 5.6e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR56231.1 - 0.00088 19.1 0.0 0.0035 17.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.6 CQR56231.1 - 0.053 14.5 0.0 0.2 12.7 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain ABC_tran PF00005.27 CQR56232.1 - 3.3e-28 98.9 0.0 4.7e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56232.1 - 5.4e-11 42.9 0.0 2.2e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR56232.1 - 9.9e-05 22.0 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR56232.1 - 0.00011 21.8 0.0 0.033 13.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR56232.1 - 0.00022 21.8 0.0 0.00035 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR56232.1 - 0.0024 18.1 0.1 0.019 15.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 CQR56232.1 - 0.017 14.5 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_16 PF13191.6 CQR56232.1 - 0.042 14.2 0.0 0.081 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 CQR56232.1 - 0.043 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain DLIC PF05783.11 CQR56232.1 - 0.051 12.4 0.1 0.071 11.9 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) MobB PF03205.14 CQR56232.1 - 0.057 13.3 0.1 0.36 10.7 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KDGP_aldolase PF07071.11 CQR56232.1 - 0.058 13.2 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 KDGP aldolase PIF1 PF05970.14 CQR56232.1 - 0.085 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase NACHT PF05729.12 CQR56232.1 - 0.13 12.2 0.0 0.36 10.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_27 PF13514.6 CQR56232.1 - 0.14 11.7 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR56232.1 - 0.2 11.5 0.1 0.54 10.2 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase G-alpha PF00503.20 CQR56232.1 - 0.26 10.4 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_13 PF13166.6 CQR56232.1 - 0.36 9.4 0.1 0.58 8.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain Thioredoxin PF00085.20 CQR56233.1 - 3.6e-09 36.6 0.0 3.7e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 CQR56233.1 - 0.0074 16.4 0.0 0.011 15.9 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like TrbC_Ftype PF09673.10 CQR56233.1 - 0.011 15.8 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Thioredoxin_2 PF13098.6 CQR56233.1 - 0.018 15.5 0.0 0.36 11.3 0.0 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain Glutaredoxin PF00462.24 CQR56233.1 - 0.05 13.8 0.4 0.092 13.0 0.4 1.8 1 1 0 1 1 1 0 Glutaredoxin Thioredoxin_6 PF13848.6 CQR56233.1 - 0.15 11.9 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.6 CQR56233.1 - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain Redoxin PF08534.10 CQR56233.1 - 0.19 11.4 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Redoxin AP_endonuc_2 PF01261.24 CQR56234.1 - 1.6e-20 73.4 0.0 3.2e-20 72.5 0.0 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Fapy_DNA_glyco PF01149.24 CQR56235.1 - 9.2e-21 74.6 0.0 2e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 CQR56235.1 - 2e-17 63.0 0.0 3.2e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 CQR56235.1 - 2.5e-11 43.2 1.6 4.4e-11 42.4 1.6 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.11 CQR56235.1 - 0.00012 21.0 0.0 0.0002 20.3 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) zf-TFIIB PF13453.6 CQR56235.1 - 0.012 14.9 1.1 0.023 14.0 1.1 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Ribosomal_S13 PF00416.22 CQR56235.1 - 0.041 14.3 0.0 0.067 13.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S13/S18 Zn_Tnp_IS1595 PF12760.7 CQR56235.1 - 0.044 13.8 0.8 0.079 13.0 0.8 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Hydrolase_6 PF13344.6 CQR56236.1 - 2.7e-26 91.6 0.0 6.3e-26 90.4 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR56236.1 - 4.3e-19 68.4 0.1 1.2e-18 66.9 0.1 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 CQR56236.1 - 2.5e-09 37.7 1.6 0.00085 19.7 0.1 3.1 1 1 2 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 CQR56236.1 - 7.7e-08 32.6 0.1 1.3e-06 28.7 0.0 2.5 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase DUF2726 PF10881.8 CQR56236.1 - 0.093 12.6 0.0 0.44 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2726) Transglut_core PF01841.19 CQR56236.1 - 0.18 12.2 1.0 0.48 10.9 0.1 2.1 3 1 0 3 3 3 0 Transglutaminase-like superfamily Hydrolase_3 PF08282.12 CQR56236.1 - 0.22 11.2 0.0 0.7 9.6 0.0 1.7 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Lactamase_B_2 PF12706.7 CQR56237.1 - 4.3e-15 55.8 0.0 2.3e-06 27.3 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 CQR56237.1 - 3.3e-08 33.8 0.0 6.2e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 CQR56237.1 - 3.7e-05 23.3 0.0 6.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease S-methyl_trans PF02574.16 CQR56238.1 - 6.4e-75 252.4 0.0 1.2e-74 251.6 0.0 1.5 1 0 0 1 1 1 1 Homocysteine S-methyltransferase Met_synt_B12 PF02965.17 CQR56238.1 - 8.3e-56 189.4 0.0 1.4e-55 188.7 0.0 1.4 1 0 0 1 1 1 1 Vitamin B12 dependent methionine synthase, activation domain Pterin_bind PF00809.22 CQR56238.1 - 6.8e-42 143.8 0.0 1.1e-41 143.1 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme B12-binding_2 PF02607.17 CQR56238.1 - 7.3e-23 80.8 0.3 8.7e-22 77.3 0.0 2.6 2 0 0 2 2 2 1 B12 binding domain B12-binding PF02310.19 CQR56238.1 - 1.3e-20 73.6 0.1 9.7e-20 70.8 0.1 2.5 2 0 0 2 2 2 1 B12 binding domain CdhD PF03599.16 CQR56238.1 - 0.00017 20.5 0.1 0.00033 19.5 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit YtkA PF13115.6 CQR56239.1 - 5.3e-10 39.8 0.5 7.4e-10 39.3 0.3 1.4 1 1 0 1 1 1 1 YtkA-like Invasin_D3 PF09134.10 CQR56239.1 - 0.019 15.3 0.2 0.029 14.7 0.2 1.3 1 0 0 1 1 1 0 Invasin, domain 3 HAD_2 PF13419.6 CQR56240.1 - 2.7e-21 76.4 0.0 2.3e-20 73.4 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR56240.1 - 1.7e-17 64.5 0.0 2e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR56240.1 - 9.2e-13 48.1 0.0 2.3e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR56240.1 - 0.00097 19.6 0.6 0.018 15.4 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 CQR56240.1 - 0.029 14.0 0.0 0.12 12.0 0.0 2.0 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase EbsA PF17255.2 CQR56241.1 - 0.0006 20.2 0.1 0.0006 20.2 0.1 1.4 2 0 0 2 2 2 1 EbsA-like protein DUF3040 PF11239.8 CQR56241.1 - 0.18 12.1 0.7 0.32 11.3 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2244 PF10003.9 CQR56241.1 - 0.91 9.2 5.4 1 9.0 0.0 2.2 1 1 1 2 2 2 0 Integral membrane protein (DUF2244) DUF896 PF05979.12 CQR56242.1 - 1.2e-20 73.1 1.7 1.3e-20 73.0 1.7 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF896) LysM PF01476.20 CQR56243.1 - 1e-07 31.8 0.0 2e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 LysM domain Baculo_11_kDa PF06143.11 CQR56243.1 - 0.047 13.3 0.1 0.065 12.8 0.1 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family LexA_DNA_bind PF01726.16 CQR56244.1 - 2.6e-27 94.4 0.1 3.8e-27 93.9 0.1 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Peptidase_S24 PF00717.23 CQR56244.1 - 1.5e-18 66.5 0.1 2.2e-18 66.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like MarR_2 PF12802.7 CQR56244.1 - 8.9e-06 25.5 0.0 1.5e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 CQR56244.1 - 2.9e-05 23.8 0.0 5.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 CQR56244.1 - 3.7e-05 23.6 0.0 8.5e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR56244.1 - 5.5e-05 22.6 0.1 0.00015 21.2 0.1 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR56244.1 - 0.014 15.3 0.0 0.038 13.9 0.0 1.7 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 CQR56244.1 - 0.016 15.1 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 CQR56244.1 - 0.019 15.0 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 CQR56244.1 - 0.029 14.7 0.0 0.25 11.7 0.0 2.1 2 0 0 2 2 2 0 Penicillinase repressor KfrA_N PF11740.8 CQR56244.1 - 0.033 14.9 0.0 0.056 14.1 0.0 1.3 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_27 PF13463.6 CQR56244.1 - 0.04 14.4 0.0 0.19 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.20 CQR56244.1 - 0.048 13.5 0.1 0.12 12.3 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 CQR56244.1 - 0.064 13.4 0.0 0.37 11.0 0.0 2.2 2 1 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 CQR56244.1 - 0.077 13.0 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.12 CQR56244.1 - 0.092 13.1 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein BLACT_WH PF17778.1 CQR56244.1 - 0.16 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain YkuD PF03734.14 CQR56245.1 - 2.2e-24 86.5 0.1 3.7e-24 85.8 0.1 1.3 1 1 0 1 1 1 1 L,D-transpeptidase catalytic domain CCDC-167 PF15188.6 CQR56249.1 - 0.008 16.5 1.7 0.008 16.5 1.7 1.3 1 1 0 1 1 1 1 Coiled-coil domain-containing protein 167 Lipoprot_C PF08794.10 CQR56251.1 - 0.13 12.3 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Lipoprotein GNA1870 C terminal like Gln-synt_C PF00120.24 CQR56252.1 - 1.3e-141 471.6 0.0 1.6e-141 471.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 CQR56252.1 - 2e-32 110.8 0.0 3.9e-32 109.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 CQR56252.1 - 0.029 14.2 0.1 0.49 10.2 0.1 2.3 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain TFIIA_gamma_N PF02268.16 CQR56252.1 - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain MerR_1 PF13411.6 CQR56253.1 - 8.2e-20 70.7 0.1 3.2e-19 68.8 0.0 1.8 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 CQR56253.1 - 3.3e-11 42.7 0.1 1.1e-10 41.0 0.0 2.0 2 0 0 2 2 2 1 MerR family regulatory protein DUF5572 PF17733.1 CQR56253.1 - 0.0012 18.6 0.3 0.0022 17.8 0.3 1.4 1 0 0 1 1 1 1 Family of unknown function (DUF5572) Met_gamma_lyase PF06838.11 CQR56254.1 - 7.5e-192 637.3 0.0 8.6e-192 637.1 0.0 1.0 1 0 0 1 1 1 1 Methionine gamma-lyase Cys_Met_Meta_PP PF01053.20 CQR56254.1 - 0.00025 19.7 0.0 0.00074 18.1 0.0 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme RNA_pol_inhib PF16857.5 CQR56254.1 - 0.12 12.2 0.4 0.25 11.2 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase inhibitor GTP-bdg_M PF16360.5 CQR56255.1 - 2e-32 111.6 4.5 4e-32 110.6 4.5 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 CQR56255.1 - 2.5e-30 105.0 0.6 6.9e-30 103.6 0.3 2.0 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 CQR56255.1 - 2.2e-21 76.1 0.1 6.7e-21 74.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR56255.1 - 6.7e-08 32.2 0.1 1.6e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 CQR56255.1 - 1.1e-05 25.6 0.1 0.037 14.1 0.0 2.7 2 1 1 3 3 3 2 Dynamin family Arf PF00025.21 CQR56255.1 - 1.2e-05 24.9 1.6 0.0004 19.9 0.2 3.3 1 1 1 2 2 2 1 ADP-ribosylation factor family G-alpha PF00503.20 CQR56255.1 - 0.0027 16.9 0.0 0.0099 15.1 0.0 1.8 2 0 0 2 2 2 1 G-protein alpha subunit RsgA_GTPase PF03193.16 CQR56255.1 - 0.0046 16.9 0.0 0.8 9.6 0.0 2.7 2 0 0 2 2 2 1 RsgA GTPase ABC_tran PF00005.27 CQR56255.1 - 0.0049 17.4 0.0 0.075 13.5 0.0 2.4 1 1 1 2 2 2 1 ABC transporter cobW PF02492.19 CQR56255.1 - 0.019 14.6 0.6 2.9 7.4 0.0 2.5 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 CQR56255.1 - 0.02 14.5 0.0 4.6 6.7 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 CQR56255.1 - 0.022 14.8 0.0 0.052 13.6 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Pox_A_type_inc PF04508.12 CQR56255.1 - 0.024 14.5 1.3 0.024 14.5 1.3 2.8 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Myosin_tail_1 PF01576.19 CQR56255.1 - 0.029 12.2 0.1 0.044 11.6 0.1 1.2 1 0 0 1 1 1 0 Myosin tail Spore_IV_A PF09547.10 CQR56255.1 - 0.046 12.7 0.0 1.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) NOG1 PF06858.14 CQR56255.1 - 0.1 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) SAB PF04382.13 CQR56255.1 - 0.13 12.3 1.2 0.28 11.3 1.2 1.5 1 0 0 1 1 1 0 SAB domain AAA PF00004.29 CQR56256.1 - 4.5e-20 72.4 0.0 8.8e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_6 PF17866.1 CQR56256.1 - 2.4e-14 53.2 0.0 6.5e-14 51.9 0.0 1.8 1 0 0 1 1 1 1 AAA lid domain RuvB_N PF05496.12 CQR56256.1 - 5.9e-06 26.1 0.1 1.8e-05 24.6 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 CQR56256.1 - 8.5e-06 26.1 1.6 0.02 15.1 0.1 2.9 3 1 1 4 4 4 2 AAA domain AAA_5 PF07728.14 CQR56256.1 - 9.2e-06 25.7 0.1 2.8e-05 24.1 0.1 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 CQR56256.1 - 9.1e-05 22.3 0.9 0.00015 21.6 0.2 1.7 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 CQR56256.1 - 0.0002 20.8 0.2 0.014 14.7 0.1 2.2 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 CQR56256.1 - 0.00024 20.3 0.1 0.011 14.9 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 CQR56256.1 - 0.0013 18.5 0.3 0.025 14.3 0.3 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 CQR56256.1 - 0.0014 19.0 0.8 0.0037 17.7 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 CQR56256.1 - 0.0065 17.0 0.0 0.019 15.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 CQR56256.1 - 0.024 14.7 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) NTPase_1 PF03266.15 CQR56256.1 - 0.026 14.4 0.2 0.044 13.7 0.2 1.4 1 0 0 1 1 1 0 NTPase Viral_helicase1 PF01443.18 CQR56256.1 - 0.031 14.0 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 CQR56256.1 - 0.051 13.9 0.1 0.13 12.5 0.1 1.8 1 0 0 1 1 1 0 AAA domain Torsin PF06309.11 CQR56256.1 - 0.072 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_33 PF13671.6 CQR56256.1 - 0.093 12.9 0.1 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF218 PF02698.17 CQR56257.1 - 1.5e-30 105.9 0.0 2.1e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 DUF218 domain DUF402 PF04167.13 CQR56258.1 - 1.2e-19 70.2 4.6 1.9e-19 69.6 4.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF402) Transgly PF00912.22 CQR56259.1 - 1.1e-58 197.6 0.0 1.8e-58 196.9 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 CQR56259.1 - 1.2e-37 129.8 5.6 3.1e-37 128.4 5.6 1.8 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain Hfq PF17209.3 CQR56260.1 - 1.7e-32 110.8 0.2 2e-32 110.6 0.2 1.1 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 CQR56260.1 - 0.0044 16.7 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 LSM domain IPPT PF01715.17 CQR56261.1 - 2.2e-86 289.4 0.2 2.7e-86 289.1 0.2 1.1 1 0 0 1 1 1 1 IPP transferase IPT PF01745.16 CQR56261.1 - 1.1e-05 24.9 0.0 9.1e-05 22.0 0.0 2.1 2 0 0 2 2 2 1 Isopentenyl transferase AAA_18 PF13238.6 CQR56261.1 - 0.0048 17.4 0.0 2.5 8.6 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.6 CQR56261.1 - 0.018 15.2 0.0 0.047 13.9 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 CQR56261.1 - 0.033 14.5 0.0 6 7.1 0.0 2.6 2 1 0 2 2 2 0 AAA domain SAM_MT PF04445.13 CQR56262.1 - 4.3e-13 49.2 0.0 5.6e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Cons_hypoth95 PF03602.15 CQR56262.1 - 0.0036 17.0 0.0 0.0053 16.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 CQR56262.1 - 0.076 13.7 0.0 0.24 12.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain MutL_C PF08676.11 CQR56263.1 - 1.3e-41 141.8 0.0 2.1e-41 141.1 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 CQR56263.1 - 6.3e-36 122.7 0.0 9.9e-36 122.0 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 CQR56263.1 - 3.3e-11 43.2 0.0 5.5e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 CQR56263.1 - 4.4e-08 33.6 0.0 7.4e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CCDC144C PF14915.6 CQR56263.1 - 0.25 10.4 0.4 0.38 9.8 0.4 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region MutS_V PF00488.21 CQR56264.1 - 8.3e-78 260.7 0.2 1.4e-77 260.0 0.2 1.4 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 CQR56264.1 - 1.6e-44 150.7 0.0 2.9e-44 149.9 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 CQR56264.1 - 1.1e-40 140.0 1.5 2.3e-40 138.9 1.5 1.6 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 CQR56264.1 - 8.3e-31 106.2 0.5 1.8e-30 105.1 0.5 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 CQR56264.1 - 1.1e-09 38.7 0.0 4e-09 36.9 0.0 1.9 2 0 0 2 2 2 1 MutS domain II AAA_29 PF13555.6 CQR56264.1 - 0.067 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 CQR56264.1 - 0.067 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 CQR56264.1 - 0.16 12.0 0.0 1 9.4 0.0 2.4 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 CQR56264.1 - 0.22 11.4 0.0 0.49 10.3 0.0 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 CQR56264.1 - 0.45 11.0 1.9 0.7 10.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain Acetyltransf_9 PF13527.7 CQR56265.1 - 2.3e-12 47.1 0.2 2.6e-11 43.7 0.2 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 CQR56265.1 - 4.1e-12 46.2 0.0 5.1e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase FR47 PF08445.10 CQR56265.1 - 1.6e-09 37.6 0.1 1.1e-08 34.9 0.0 2.4 3 1 0 3 3 3 1 FR47-like protein Acetyltransf_7 PF13508.7 CQR56265.1 - 8e-09 35.8 0.0 1.6e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56265.1 - 3.8e-08 33.6 0.0 1.2e-07 32.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR56265.1 - 7.7e-08 32.3 0.0 1.4e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR56265.1 - 0.0033 17.5 0.0 0.0077 16.3 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF4055 PF13264.6 CQR56265.1 - 0.01 16.0 0.3 0.044 13.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4055) Acetyltransf_3 PF13302.7 CQR56265.1 - 0.016 15.9 0.0 0.1 13.3 0.0 2.0 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF4081 PF13312.6 CQR56265.1 - 0.032 14.4 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4081) Ribosomal_L31 PF01197.18 CQR56265.1 - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L31 Acetyltransf_6 PF13480.7 CQR56265.1 - 0.15 12.2 1.0 0.42 10.8 0.9 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain COOH-NH2_lig PF14395.6 CQR56266.1 - 1e-98 329.6 0.0 1.4e-98 329.2 0.0 1.1 1 0 0 1 1 1 1 Phage phiEco32-like COOH.NH2 ligase-type 2 CotE PF10628.9 CQR56267.1 - 4e-62 208.9 0.0 4.5e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 Outer spore coat protein E (CotE) HD PF01966.22 CQR56268.1 - 1.1e-13 51.5 0.1 1.8e-13 50.8 0.1 1.4 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR56268.1 - 3.9e-13 49.4 0.0 8.1e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 CQR56268.1 - 0.038 13.5 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 HDOD domain ArAE_1_C PF11728.8 CQR56269.1 - 2.2e-42 144.9 0.0 3.1e-42 144.4 0.0 1.1 1 0 0 1 1 1 1 Putative aromatic acid exporter C-terminal domain ArAE_1 PF06081.11 CQR56269.1 - 3.2e-34 118.1 10.2 4.1e-34 117.7 10.2 1.1 1 0 0 1 1 1 1 Aromatic acid exporter family member 1 FUSC_2 PF13515.6 CQR56269.1 - 0.00081 19.5 9.2 0.0012 18.9 9.1 1.4 1 1 0 1 1 1 1 Fusaric acid resistance protein-like Stork_head PF10264.9 CQR56269.1 - 0.088 13.0 0.1 1.5 9.1 0.0 2.3 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain CbiQ PF02361.16 CQR56269.1 - 1.1 8.9 9.2 1.6 8.3 9.2 1.2 1 0 0 1 1 1 0 Cobalt transport protein BPD_transp_1 PF00528.22 CQR56270.1 - 3.4e-23 82.3 20.6 5.7e-23 81.6 20.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PIG-F PF06699.11 CQR56270.1 - 0.006 16.8 3.0 0.006 16.8 3.0 2.6 2 1 0 2 2 2 1 GPI biosynthesis protein family Pig-F FtsX PF02687.21 CQR56270.1 - 0.66 10.5 26.2 3.2 8.3 8.3 2.8 2 1 0 2 2 2 0 FtsX-like permease family ABC_tran PF00005.27 CQR56271.1 - 2.9e-29 102.3 0.0 4e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56271.1 - 1e-09 38.7 0.1 0.0013 18.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR56271.1 - 8.5e-05 23.0 0.0 0.00014 22.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 CQR56271.1 - 0.0029 17.0 0.0 0.01 15.2 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 CQR56271.1 - 0.0039 17.6 0.0 0.0082 16.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 CQR56271.1 - 0.004 16.9 0.0 0.0091 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR56271.1 - 0.0059 16.9 0.1 0.02 15.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR56271.1 - 0.0098 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR56271.1 - 0.0099 15.8 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 CQR56271.1 - 0.011 15.4 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 CQR56271.1 - 0.014 15.4 0.1 0.036 14.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 CQR56271.1 - 0.017 15.0 0.2 0.051 13.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 CQR56271.1 - 0.02 14.8 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 CQR56271.1 - 0.023 14.6 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 CQR56271.1 - 0.026 13.7 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 CQR56271.1 - 0.028 14.2 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 CQR56271.1 - 0.044 13.5 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 CQR56271.1 - 0.045 14.0 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR56271.1 - 0.085 13.0 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 CQR56271.1 - 0.09 12.2 0.0 3.2 7.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR56271.1 - 0.099 13.1 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 CQR56271.1 - 0.2 11.5 0.2 0.57 10.1 0.1 1.7 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 CQR56271.1 - 0.22 11.5 0.2 0.69 9.9 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 CQR56271.1 - 0.25 10.8 0.0 0.39 10.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NMT1_2 PF13379.6 CQR56272.1 - 1.3e-17 64.4 0.0 2.1e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 CQR56272.1 - 1.1e-15 58.2 0.2 1.6e-15 57.7 0.2 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 CQR56272.1 - 0.0037 16.9 0.2 0.0057 16.3 0.2 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Imm6 PF14434.6 CQR56272.1 - 0.025 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Immunity protein Imm6 SBP_bac_3 PF00497.20 CQR56272.1 - 0.056 12.9 0.0 0.14 11.6 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DREPP PF05558.12 CQR56274.1 - 0.0036 17.2 0.1 0.0042 17.0 0.1 1.0 1 0 0 1 1 1 1 DREPP plasma membrane polypeptide Flavodoxin_2 PF02525.17 CQR56276.1 - 4.7e-41 140.7 0.4 5.8e-41 140.4 0.4 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR56276.1 - 1.3e-06 28.3 0.0 1.4e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase RsgA_GTPase PF03193.16 CQR56277.1 - 7.9e-46 156.0 0.0 1.1e-45 155.5 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase ABC_tran PF00005.27 CQR56277.1 - 1e-05 26.1 0.3 2e-05 25.1 0.3 1.6 1 1 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.23 CQR56277.1 - 1.4e-05 25.1 0.0 3e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_N PF16745.5 CQR56277.1 - 0.0025 17.5 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA N-terminal domain PduV-EutP PF10662.9 CQR56277.1 - 0.0087 15.8 0.7 0.99 9.2 0.1 3.2 3 1 1 4 4 4 1 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 CQR56277.1 - 0.018 14.0 0.1 0.034 13.1 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 CQR56277.1 - 0.022 14.5 0.2 0.06 13.1 0.2 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain FeoB_N PF02421.18 CQR56277.1 - 0.026 14.1 0.2 0.13 11.8 0.1 2.1 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 CQR56277.1 - 0.036 13.3 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Septin AAA_28 PF13521.6 CQR56277.1 - 0.043 14.1 0.1 0.13 12.5 0.1 1.8 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR56277.1 - 0.064 13.2 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 CQR56277.1 - 0.097 12.6 0.4 0.21 11.5 0.1 1.6 2 0 0 2 2 2 0 NACHT domain Dynamin_N PF00350.23 CQR56277.1 - 0.12 12.5 3.9 0.38 10.8 0.0 2.8 3 1 1 4 4 4 0 Dynamin family AAA_16 PF13191.6 CQR56277.1 - 0.13 12.6 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain HAD_2 PF13419.6 CQR56278.1 - 2e-32 112.7 0.0 3.1e-32 112.1 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR56278.1 - 1.2e-15 58.4 0.1 1.9e-14 54.5 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR56278.1 - 3.7e-12 46.1 0.0 7.1e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR56278.1 - 7.4e-10 39.5 0.5 9.7e-10 39.1 0.5 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 CQR56278.1 - 0.0021 17.9 0.0 0.99 9.2 0.1 2.2 2 0 0 2 2 2 2 NLI interacting factor-like phosphatase PGP_phosphatase PF09419.10 CQR56278.1 - 0.054 13.1 0.0 4.7 6.8 0.0 2.6 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase Hydrolase_6 PF13344.6 CQR56278.1 - 0.079 13.1 0.0 0.39 10.8 0.0 2.1 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase DUF3939 PF13075.6 CQR56279.1 - 3.9e-51 172.6 0.2 4.7e-51 172.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3939) DUF2087 PF09860.9 CQR56280.1 - 9.8e-24 83.3 0.1 2e-23 82.3 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2087) HTH_20 PF12840.7 CQR56280.1 - 9.4e-12 44.8 0.5 1.4e-11 44.3 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR56280.1 - 2.6e-11 43.2 0.3 4.8e-11 42.3 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR56280.1 - 3.1e-06 27.0 0.3 5e-06 26.3 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR56280.1 - 1.4e-05 24.6 0.1 2.3e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 CQR56280.1 - 8.6e-05 22.3 0.0 0.00017 21.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 CQR56280.1 - 0.00015 21.6 1.2 0.00024 21.0 0.3 1.8 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 CQR56280.1 - 0.00087 19.2 0.1 0.0018 18.2 0.1 1.5 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 CQR56280.1 - 0.001 18.9 0.1 0.0046 16.8 0.0 2.0 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_28 PF13518.6 CQR56280.1 - 0.0024 18.0 1.3 0.0031 17.6 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 CQR56280.1 - 0.01 16.0 0.1 0.027 14.7 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 CQR56280.1 - 0.013 15.8 0.1 0.033 14.5 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator RepL PF05732.11 CQR56280.1 - 0.018 14.5 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Crp_2 PF13545.6 CQR56280.1 - 0.034 14.1 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.27 CQR56280.1 - 0.055 13.4 0.2 0.095 12.7 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Mga PF05043.13 CQR56280.1 - 0.065 13.8 1.0 0.5 11.0 0.0 2.7 2 1 1 3 3 3 0 Mga helix-turn-helix domain HTH_23 PF13384.6 CQR56280.1 - 0.11 12.3 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 CQR56280.1 - 0.12 12.4 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Pyr_redox_3 PF13738.6 CQR56281.1 - 4.9e-85 285.5 0.0 5.6e-85 285.3 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 CQR56281.1 - 2.1e-31 109.2 0.0 2.7e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR56281.1 - 9.6e-11 42.1 1.5 1.1e-07 32.3 0.1 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 CQR56281.1 - 1.3e-09 37.7 0.0 4.3e-06 26.1 0.0 2.5 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 CQR56281.1 - 8.2e-09 35.0 0.2 5e-07 29.2 0.0 2.8 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 CQR56281.1 - 2e-08 34.2 1.0 0.00022 20.9 0.1 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR56281.1 - 5.5e-08 31.9 0.7 1.4e-05 24.0 0.0 3.6 4 0 0 4 4 4 1 HI0933-like protein FAD_binding_3 PF01494.19 CQR56281.1 - 5.8e-08 32.4 2.5 1.3e-05 24.6 0.0 3.1 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 CQR56281.1 - 7e-07 28.9 2.7 5.9e-05 22.6 0.0 3.0 4 0 0 4 4 4 1 FAD dependent oxidoreductase GIDA PF01134.22 CQR56281.1 - 9.9e-07 28.2 0.0 0.0037 16.4 0.0 3.3 4 0 0 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.17 CQR56281.1 - 5.7e-06 25.7 0.4 0.00011 21.5 0.0 2.5 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.6 CQR56281.1 - 0.00021 21.4 1.1 0.0006 20.0 0.0 2.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 CQR56281.1 - 0.0066 15.5 0.1 0.018 14.1 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein FMO-like PF00743.19 CQR56281.1 - 0.01 14.3 0.0 0.25 9.7 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 CQR56281.1 - 0.016 14.5 0.0 3.2 7.0 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 CQR56281.1 - 0.056 13.9 0.0 0.55 10.7 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF441 PF04284.13 CQR56282.1 - 3.9e-46 156.5 18.2 4.4e-46 156.3 18.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF441) MerR_1 PF13411.6 CQR56284.1 - 9.8e-11 41.6 0.1 2.2e-10 40.5 0.1 1.6 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 CQR56284.1 - 9.3e-05 22.1 0.0 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein ABC_membrane PF00664.23 CQR56285.1 - 8.1e-39 133.9 11.5 1.1e-38 133.5 11.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR56285.1 - 1.1e-33 116.7 0.0 2.3e-33 115.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR56285.1 - 1.4e-06 28.0 0.2 5.2e-05 22.8 0.0 1.9 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR56285.1 - 0.0025 17.8 0.0 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 CQR56285.1 - 0.034 13.9 0.0 0.094 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 CQR56285.1 - 0.05 12.4 0.1 0.12 11.2 0.1 1.6 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR56285.1 - 0.09 13.2 1.1 0.52 10.7 1.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 CQR56285.1 - 0.1 12.5 0.1 0.35 10.8 0.1 1.9 2 0 0 2 2 2 0 NTPase YtpI PF14007.6 CQR56285.1 - 0.12 12.5 1.7 2.8 8.2 0.6 2.8 2 0 0 2 2 2 0 YtpI-like protein SbcCD_C PF13558.6 CQR56285.1 - 0.77 10.0 2.6 4.5 7.6 0.3 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PhoR PF11808.8 CQR56285.1 - 0.87 10.0 3.4 13 6.3 0.9 2.6 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR Fe-S_biosyn PF01521.20 CQR56287.1 - 0.0014 18.8 0.0 0.0018 18.5 0.0 1.2 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis ABC_membrane PF00664.23 CQR56288.1 - 1.4e-47 162.6 10.1 1.9e-47 162.2 10.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR56288.1 - 1.8e-30 106.2 0.1 6.5e-30 104.4 0.1 1.9 2 0 0 2 2 2 1 ABC transporter DUF87 PF01935.17 CQR56288.1 - 0.00048 20.3 0.0 0.00098 19.3 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain SMC_N PF02463.19 CQR56288.1 - 0.00075 19.0 0.1 0.17 11.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR56288.1 - 0.0038 17.5 0.5 0.018 15.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 CQR56288.1 - 0.0038 17.3 0.2 0.033 14.3 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 CQR56288.1 - 0.0049 16.8 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 CQR56288.1 - 0.0092 16.0 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Dynamin family AAA_33 PF13671.6 CQR56288.1 - 0.011 15.9 0.0 0.049 13.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 CQR56288.1 - 0.011 15.3 0.2 0.099 12.2 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 CQR56288.1 - 0.012 14.9 0.2 0.028 13.6 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain ABC_membrane_3 PF13748.6 CQR56288.1 - 0.013 14.7 1.3 0.013 14.7 1.3 2.0 2 0 0 2 2 2 0 ABC transporter transmembrane region AAA_29 PF13555.6 CQR56288.1 - 0.015 15.0 1.1 0.062 13.1 0.7 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 CQR56288.1 - 0.025 13.7 0.0 0.049 12.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP-synt_ab PF00006.25 CQR56288.1 - 0.048 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 CQR56288.1 - 0.055 13.9 1.5 0.25 11.7 1.4 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 CQR56288.1 - 0.056 13.2 2.1 0.66 9.7 2.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR56288.1 - 0.073 12.6 1.1 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region NACHT PF05729.12 CQR56288.1 - 0.087 12.7 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 CQR56288.1 - 0.12 11.7 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family KAP_NTPase PF07693.14 CQR56288.1 - 0.14 11.4 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain MobB PF03205.14 CQR56288.1 - 0.15 12.0 0.1 0.81 9.6 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Dala_Dala_lig_N PF01820.21 CQR56288.1 - 0.16 12.5 0.0 0.38 11.2 0.0 1.6 1 0 0 1 1 1 0 D-ala D-ala ligase N-terminus AAA_14 PF13173.6 CQR56288.1 - 0.16 12.0 0.0 0.96 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain PrgI PF12666.7 CQR56288.1 - 3.6 8.4 13.0 2.2 9.0 0.3 3.1 3 0 0 3 3 3 0 PrgI family protein ABC_membrane PF00664.23 CQR56289.1 - 6.4e-42 144.1 8.0 1.2e-41 143.2 8.0 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR56289.1 - 1.4e-34 119.5 0.0 2.6e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR56289.1 - 3.9e-07 29.7 0.4 0.0005 19.6 0.4 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR56289.1 - 5.8e-06 26.8 0.1 1.4e-05 25.6 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR56289.1 - 0.00087 19.6 0.0 0.0067 16.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR56289.1 - 0.003 17.5 0.0 0.0071 16.3 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 CQR56289.1 - 0.0062 16.6 0.0 0.024 14.7 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 CQR56289.1 - 0.013 14.8 0.0 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.6 CQR56289.1 - 0.019 14.7 0.0 0.044 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR56289.1 - 0.028 14.1 0.4 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ACR_tran PF00873.19 CQR56289.1 - 0.037 11.7 1.8 0.056 11.1 1.8 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family AAA_23 PF13476.6 CQR56289.1 - 0.04 14.4 1.7 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 CQR56289.1 - 0.07 12.3 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Dynamin_N PF00350.23 CQR56289.1 - 0.07 13.2 0.2 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Dynamin family DUF3387 PF11867.8 CQR56289.1 - 0.12 11.8 0.1 0.19 11.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3387) EzrA PF06160.12 CQR56289.1 - 0.31 9.2 2.8 0.45 8.6 2.8 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA AAA_21 PF13304.6 CQR56289.1 - 0.86 9.4 4.5 5.7 6.7 0.1 2.9 2 1 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system HTH_42 PF06224.12 CQR56290.1 - 2.6e-53 181.7 6.5 3.2e-53 181.4 6.5 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Abhydrolase_1 PF00561.20 CQR56291.1 - 1.2e-11 44.8 0.0 2.1e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR56291.1 - 2e-08 35.1 6.3 2.9e-08 34.6 6.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR56291.1 - 6.4e-08 32.1 0.0 9.7e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 CQR56291.1 - 0.00019 21.6 1.1 0.0012 19.0 1.1 2.0 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_5 PF12695.7 CQR56291.1 - 0.037 13.8 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family HATPase_c PF02518.26 CQR56292.1 - 1.5e-27 96.3 0.0 2.9e-27 95.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56292.1 - 2.8e-17 62.5 1.2 6.1e-17 61.4 1.2 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR56292.1 - 1.4e-15 57.4 0.4 2.8e-15 56.4 0.4 1.6 1 0 0 1 1 1 1 HAMP domain PurA PF04845.13 CQR56292.1 - 0.0089 15.4 0.1 0.013 14.8 0.1 1.2 1 0 0 1 1 1 1 PurA ssDNA and RNA-binding protein HATPase_c_3 PF13589.6 CQR56292.1 - 0.025 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_32 PF13565.6 CQR56292.1 - 0.029 15.0 0.3 0.11 13.2 0.2 2.0 1 1 0 1 1 1 0 Homeodomain-like domain Syntaxin_2 PF14523.6 CQR56292.1 - 0.04 14.3 2.7 0.087 13.2 0.5 2.2 1 1 1 2 2 2 0 Syntaxin-like protein Sigma70_r4_2 PF08281.12 CQR56292.1 - 0.086 12.5 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HATPase_c_5 PF14501.6 CQR56292.1 - 0.12 12.2 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Response_reg PF00072.24 CQR56293.1 - 2.2e-31 108.3 0.0 3.3e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56293.1 - 1.3e-20 73.2 0.0 2.2e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal SSXRD PF09514.10 CQR56293.1 - 0.11 12.2 0.0 0.32 10.6 0.0 1.8 1 0 0 1 1 1 0 SSXRD motif DUF2304 PF10066.9 CQR56295.1 - 0.048 13.9 1.4 0.048 13.9 1.4 3.0 4 0 0 4 4 4 0 Uncharacterized conserved protein (DUF2304) Syndecan PF01034.20 CQR56295.1 - 0.57 10.1 0.1 0.57 10.1 0.1 3.5 4 1 1 5 5 5 0 Syndecan domain ABC_tran PF00005.27 CQR56296.1 - 1.5e-21 77.4 0.0 2.4e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56296.1 - 1.6e-15 57.8 4.6 2e-08 34.4 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR56296.1 - 0.00024 20.8 0.6 0.0005 19.7 0.6 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR56296.1 - 0.00029 20.3 0.5 0.064 12.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR56296.1 - 0.0016 18.3 0.0 0.0023 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR56296.1 - 0.044 13.7 0.2 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 CQR56296.1 - 0.058 13.9 0.6 0.092 13.2 0.6 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 CQR56296.1 - 0.075 11.7 0.0 1 7.9 0.3 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR56296.1 - 0.097 12.4 0.5 0.21 11.3 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR56296.1 - 0.11 12.9 0.4 0.17 12.3 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 CQR56296.1 - 0.15 12.2 0.2 0.43 10.7 0.2 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF326 PF03860.16 CQR56297.1 - 9.1e-11 41.4 33.7 0.0021 18.0 3.8 4.3 4 0 0 4 4 4 4 Domain of Unknown Function (DUF326) cobW PF02492.19 CQR56298.1 - 9.4e-47 158.9 0.1 1.2e-46 158.5 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 CQR56298.1 - 4.8e-13 48.9 0.0 2.2e-12 46.8 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis protein cobW C-terminal domain Arf PF00025.21 CQR56298.1 - 0.00014 21.4 0.0 0.023 14.1 0.0 2.2 2 0 0 2 2 2 1 ADP-ribosylation factor family MobB PF03205.14 CQR56298.1 - 0.00031 20.6 0.0 0.00085 19.2 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 CQR56298.1 - 0.0006 19.8 0.3 0.0017 18.3 0.1 1.7 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 CQR56298.1 - 0.0026 18.2 0.0 0.0076 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 CQR56298.1 - 0.0067 16.6 0.0 0.12 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 CQR56298.1 - 0.0093 16.2 0.0 0.06 13.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 CQR56298.1 - 0.015 15.1 0.0 0.039 13.7 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 CQR56298.1 - 0.016 14.8 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_30 PF13604.6 CQR56298.1 - 0.018 14.8 0.0 0.055 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 CQR56298.1 - 0.018 15.0 0.0 0.047 13.7 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 CQR56298.1 - 0.02 14.8 0.0 4.4 7.2 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase Viral_helicase1 PF01443.18 CQR56298.1 - 0.022 14.5 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TrwB_AAD_bind PF10412.9 CQR56298.1 - 0.064 12.1 0.0 0.13 11.2 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 CQR56298.1 - 0.099 12.3 0.0 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF2374 PF09574.10 CQR56298.1 - 0.12 12.2 0.0 0.53 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (Duf2374) NTPase_1 PF03266.15 CQR56298.1 - 0.13 12.1 0.0 0.47 10.3 0.0 1.9 2 0 0 2 2 2 0 NTPase MeaB PF03308.16 CQR56298.1 - 0.15 11.1 0.1 0.4 9.6 0.1 1.9 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 CQR56298.1 - 0.15 11.7 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase MoCF_biosynth PF00994.24 CQR56299.1 - 8.7e-33 113.0 0.3 9.9e-33 112.8 0.3 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain HTH_5 PF01022.20 CQR56300.1 - 2.5e-12 46.4 0.0 4.7e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR56300.1 - 9.2e-10 38.4 0.1 2e-09 37.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR56300.1 - 0.00013 21.4 0.0 0.00028 20.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 CQR56300.1 - 0.0032 17.4 0.1 0.0071 16.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 CQR56300.1 - 0.0042 17.0 0.0 0.013 15.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 CQR56300.1 - 0.006 16.7 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 CQR56300.1 - 0.013 15.4 0.1 0.03 14.2 0.1 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 CQR56300.1 - 0.013 15.3 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Clathrin_bdg PF15045.6 CQR56300.1 - 0.017 15.1 0.1 0.073 13.1 0.0 2.0 2 0 0 2 2 2 0 Clathrin-binding box of Aftiphilin, vesicle trafficking HTH_23 PF13384.6 CQR56300.1 - 0.02 14.7 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 CQR56300.1 - 0.025 14.6 0.0 0.057 13.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF4423 PF14394.6 CQR56300.1 - 0.059 13.1 0.1 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 CQR56300.1 - 0.096 12.7 0.0 0.33 11.0 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain ABC2_membrane PF01061.24 CQR56301.1 - 5.9e-12 45.5 15.1 5.9e-12 45.5 15.1 1.7 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR56301.1 - 1.1e-10 41.2 14.5 1.4e-10 40.8 14.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR56301.1 - 0.011 15.1 12.5 0.021 14.1 11.9 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR56301.1 - 0.049 13.6 5.3 0.034 14.1 3.6 1.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 CQR56302.1 - 3.8e-28 98.7 0.0 6.3e-28 98.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56302.1 - 7.6e-07 29.2 0.2 0.0034 17.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 CQR56302.1 - 0.047 13.3 0.1 0.089 12.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 CQR56302.1 - 0.11 12.2 0.6 0.28 10.9 0.6 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR56302.1 - 0.14 11.8 0.0 3.2 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 CQR56302.1 - 0.2 10.9 0.0 0.35 10.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC2_membrane PF01061.24 CQR56303.1 - 4.8e-09 35.9 20.3 4.8e-09 35.9 20.3 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 CQR56303.1 - 0.0003 20.8 7.5 0.0003 20.8 7.5 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR56303.1 - 0.14 11.4 18.8 0.087 12.1 16.7 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein B12D PF06522.11 CQR56303.1 - 1.2 9.0 3.2 5.6 6.8 0.0 2.7 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Oxidored_nitro PF00148.19 CQR56304.1 - 1.1e-57 195.6 0.0 1.3e-57 195.4 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 CQR56305.1 - 3.8e-87 292.6 0.0 4.7e-87 292.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase ABC_tran PF00005.27 CQR56306.1 - 5.3e-31 108.0 0.0 7.3e-31 107.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56306.1 - 3e-05 24.0 0.0 0.009 15.9 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56306.1 - 8e-05 22.9 0.0 0.0002 21.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR56306.1 - 8.2e-05 22.6 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 CQR56306.1 - 0.00042 20.8 0.1 0.0037 17.7 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 CQR56306.1 - 0.0014 18.8 0.0 0.0059 16.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR56306.1 - 0.0083 16.7 0.0 0.012 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR56306.1 - 0.011 16.1 0.1 0.018 15.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 CQR56306.1 - 0.016 15.7 0.0 0.029 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR56306.1 - 0.018 15.3 0.0 0.06 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR56306.1 - 0.036 13.2 0.1 0.06 12.5 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 CQR56306.1 - 0.075 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 CQR56306.1 - 0.078 12.7 0.2 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 CQR56306.1 - 0.093 12.7 0.0 0.32 11.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 CQR56306.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 CQR56306.1 - 0.11 12.2 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 CQR56306.1 - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 CQR56306.1 - 0.13 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 CQR56306.1 - 0.14 12.6 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 CQR56307.1 - 7.3e-17 61.7 22.3 7.3e-17 61.7 22.3 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CPP1-like PF11833.8 CQR56307.1 - 0.023 14.4 1.8 0.023 14.4 1.8 2.9 2 1 1 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Romo1 PF10247.9 CQR56307.1 - 0.023 15.0 3.9 0.17 12.3 0.6 2.8 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF4245 PF14030.6 CQR56307.1 - 0.11 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) ISK_Channel PF02060.15 CQR56307.1 - 0.11 12.2 0.8 0.69 9.6 0.0 2.3 2 0 0 2 2 2 0 Slow voltage-gated potassium channel NMT1 PF09084.11 CQR56308.1 - 1.9e-25 90.1 0.0 2.7e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 CQR56308.1 - 2.9e-16 59.9 0.1 8.2e-16 58.5 0.1 1.7 1 1 0 1 1 1 1 NMT1-like family NMT1_3 PF16868.5 CQR56308.1 - 0.00031 20.3 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 CQR56308.1 - 0.0074 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 CQR56308.1 - 0.027 13.9 0.0 0.089 12.2 0.0 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 VitK2_biosynth PF02621.14 CQR56308.1 - 0.054 13.0 0.1 0.67 9.4 0.1 2.3 1 1 0 1 1 1 0 Menaquinone biosynthesis HHH_8 PF14716.6 CQR56308.1 - 0.15 12.5 0.2 0.42 11.0 0.2 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Cys_Met_Meta_PP PF01053.20 CQR56309.1 - 7.7e-119 396.6 0.0 8.8e-119 396.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 CQR56309.1 - 6e-08 32.4 0.0 9.4e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 CQR56309.1 - 2e-07 30.3 0.0 3e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 CQR56309.1 - 6.5e-05 22.3 0.0 0.0001 21.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 CQR56310.1 - 3.4e-25 89.3 0.0 7.4e-25 88.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Nitro_FeMo-Co PF02579.17 CQR56310.1 - 4e-18 65.5 0.1 1.1e-17 64.2 0.1 1.7 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Fer4_14 PF13394.6 CQR56310.1 - 0.035 14.2 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_NifH PF00142.18 CQR56311.1 - 6.5e-102 340.6 0.2 7.4e-102 340.4 0.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 CQR56311.1 - 1.8e-11 44.2 0.0 3.3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 CQR56311.1 - 2e-08 34.0 0.8 3.4e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 CQR56311.1 - 6.5e-08 32.7 0.2 1.5e-07 31.5 0.1 1.6 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 CQR56311.1 - 0.00014 21.1 0.2 0.00066 19.0 0.3 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 CQR56311.1 - 0.00083 18.4 0.0 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 CQR56311.1 - 0.0042 16.8 0.0 0.0068 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 CQR56311.1 - 0.023 14.0 0.3 0.062 12.6 0.1 1.7 2 0 0 2 2 2 0 ATPase MipZ AAA_16 PF13191.6 CQR56311.1 - 0.026 14.9 0.1 0.21 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain NTPase_1 PF03266.15 CQR56311.1 - 0.035 14.0 0.3 0.1 12.5 0.1 1.9 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 CQR56311.1 - 0.11 12.9 0.1 0.34 11.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 CQR56311.1 - 0.13 11.4 0.4 0.25 10.5 0.4 1.3 1 0 0 1 1 1 0 NB-ARC domain Ribosomal_L11_N PF03946.14 CQR56311.1 - 0.17 11.8 0.4 15 5.5 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L11, N-terminal domain AAA_7 PF12775.7 CQR56311.1 - 0.2 11.2 0.3 0.36 10.3 0.3 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Nitro_FeMo-Co PF02579.17 CQR56312.1 - 1.9e-17 63.4 0.0 2.3e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AnfO_nitrog PF09582.10 CQR56312.1 - 0.16 11.3 0.0 0.18 11.2 0.0 1.0 1 0 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) DUF1349 PF07081.11 CQR56313.1 - 5.1e-54 182.7 0.1 5.8e-54 182.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) MFS_1 PF07690.16 CQR56314.1 - 3.4e-32 111.7 71.6 1.6e-24 86.5 40.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR56314.1 - 0.00052 19.4 23.4 0.0099 15.2 23.4 2.1 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB ROK PF00480.20 CQR56315.1 - 2.8e-18 66.4 0.0 8.1e-14 51.8 0.0 2.2 1 1 1 2 2 2 2 ROK family POR_N PF01855.19 CQR56316.1 - 1e-53 182.5 0.3 1.8e-53 181.7 0.3 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 CQR56316.1 - 1.4e-25 89.5 0.1 3.5e-25 88.3 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 CQR56316.1 - 9.2e-10 38.5 0.2 2.1e-09 37.4 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_C PF02780.20 CQR56316.1 - 0.00013 21.8 0.0 0.0012 18.7 0.0 2.4 2 0 0 2 2 2 1 Transketolase, C-terminal domain POR PF01558.18 CQR56317.1 - 5e-28 98.4 0.2 6.3e-28 98.0 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_10 PF13237.6 CQR56317.1 - 5.3e-09 36.1 6.6 0.00023 21.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 CQR56317.1 - 3.3e-08 33.0 13.7 2.6e-05 23.8 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 CQR56317.1 - 4.1e-08 33.7 12.5 7.4e-08 32.9 12.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR56317.1 - 1.8e-06 27.8 14.3 0.00094 19.2 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 CQR56317.1 - 2.2e-06 28.5 8.4 0.00066 20.6 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 CQR56317.1 - 3.2e-06 26.9 12.0 0.0059 16.6 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 CQR56317.1 - 5.4e-06 26.4 8.1 1e-05 25.5 8.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 CQR56317.1 - 5.1e-05 23.4 12.9 0.00027 21.1 13.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 CQR56317.1 - 0.00024 21.6 6.0 0.046 14.3 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 CQR56317.1 - 0.0087 16.5 13.2 0.028 14.9 13.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR56317.1 - 0.026 15.0 16.4 0.42 11.3 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 CQR56317.1 - 0.14 12.9 8.9 2.6 8.9 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 CQR56317.1 - 0.82 10.6 13.9 1.5 9.7 3.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 CQR56317.1 - 1.7 9.3 12.6 2.4 8.8 4.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Glyco_hydro_8 PF01270.17 CQR56318.1 - 1.8e-33 115.8 16.6 2.1e-33 115.6 16.6 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 8 NAPRTase_N PF17767.1 CQR56319.1 - 1e-38 132.5 0.9 3.7e-37 127.5 0.3 2.5 3 0 0 3 3 3 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase_C PF17956.1 CQR56319.1 - 8.6e-28 97.0 0.0 1.4e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase PF04095.16 CQR56319.1 - 1.8e-11 44.1 0.0 2.9e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family QRPTase_C PF01729.19 CQR56319.1 - 0.017 14.9 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 CQR56319.1 - 0.084 12.9 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain Isochorismatase PF00857.20 CQR56320.1 - 1.3e-38 132.9 0.0 1.4e-38 132.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Bombesin PF02044.17 CQR56320.1 - 0.29 11.3 1.5 0.58 10.3 1.5 1.5 1 0 0 1 1 1 0 Bombesin-like peptide NUDIX PF00293.28 CQR56321.1 - 3.5e-17 62.7 0.1 9.4e-17 61.3 0.4 1.6 2 0 0 2 2 2 1 NUDIX domain NUDIX_4 PF14815.6 CQR56321.1 - 0.17 11.9 0.8 0.45 10.5 0.2 2.0 1 1 1 2 2 2 0 NUDIX domain Com_YlbF PF06133.11 CQR56322.1 - 2.7e-21 76.1 11.0 3.3e-21 75.9 11.0 1.1 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA Efg1 PF10153.9 CQR56322.1 - 0.0082 16.5 3.9 0.011 16.1 3.9 1.1 1 0 0 1 1 1 1 rRNA-processing protein Efg1 DUF4242 PF14026.6 CQR56322.1 - 0.027 14.6 0.5 0.038 14.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) PCRF PF03462.18 CQR56322.1 - 0.56 10.0 6.4 0.72 9.7 6.4 1.3 1 1 0 1 1 1 0 PCRF domain ABC_tran_CTD PF16326.5 CQR56322.1 - 4.2 7.7 8.3 0.8 10.0 1.1 2.4 1 1 1 2 2 2 0 ABC transporter C-terminal domain Radical_SAM PF04055.21 CQR56323.1 - 6.5e-32 111.2 0.1 1.2e-31 110.3 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 CQR56323.1 - 1.3e-27 95.7 0.1 3.2e-27 94.4 0.1 1.7 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 CQR56323.1 - 2.2e-13 50.0 0.1 4.6e-13 48.9 0.1 1.6 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 CQR56323.1 - 0.00027 21.0 0.0 0.00089 19.4 0.0 1.9 1 1 0 1 1 1 1 TRAM domain Oxidored_FMN PF00724.20 CQR56324.1 - 4.6e-73 246.4 0.0 3.7e-72 243.5 0.0 1.9 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family AP_endonuc_2 PF01261.24 CQR56324.1 - 0.066 12.7 0.1 1.9 7.9 0.1 2.6 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Aldolase_II PF00596.21 CQR56325.1 - 1.2e-40 139.5 0.0 1.6e-40 139.0 0.0 1.2 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain RhaA PF06134.11 CQR56326.1 - 4.3e-227 754.2 0.0 4.9e-227 754.0 0.0 1.0 1 0 0 1 1 1 1 L-rhamnose isomerase (RhaA) FGGY_N PF00370.21 CQR56327.1 - 7.5e-30 104.3 0.0 1e-29 103.8 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 CQR56327.1 - 7.8e-29 100.8 0.1 1.2e-28 100.2 0.1 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF123 PF01986.16 CQR56327.1 - 0.053 14.0 0.0 12 6.5 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF123 Fe-ADH PF00465.19 CQR56328.1 - 4e-125 417.4 2.2 4.6e-125 417.2 2.2 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 CQR56328.1 - 2.6e-21 76.5 2.0 2.4e-18 66.8 2.0 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DeoRC PF00455.22 CQR56329.1 - 1.9e-52 177.4 0.2 2.6e-52 177.0 0.2 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 CQR56329.1 - 1.4e-16 60.0 2.6 2.9e-16 59.0 1.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR56329.1 - 1.3e-06 28.3 1.0 4e-06 26.7 0.6 2.0 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 CQR56329.1 - 0.00033 20.5 0.1 0.0007 19.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF977 PF06163.11 CQR56329.1 - 0.0027 17.6 0.1 0.0094 15.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF977) HTH_20 PF12840.7 CQR56329.1 - 0.0028 17.7 0.1 0.0067 16.5 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR56329.1 - 0.0029 17.6 0.1 0.0069 16.3 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR56329.1 - 0.0039 16.7 0.2 0.0071 15.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DDRGK PF09756.9 CQR56329.1 - 0.004 16.8 0.2 0.0066 16.1 0.2 1.2 1 0 0 1 1 1 1 DDRGK domain GntR PF00392.21 CQR56329.1 - 0.0068 16.0 0.1 0.015 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 CQR56329.1 - 0.01 15.7 0.2 0.43 10.5 0.0 2.3 2 0 0 2 2 2 0 MarR family Put_DNA-bind_N PF06971.13 CQR56329.1 - 0.01 15.8 0.3 0.37 10.8 0.1 3.0 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus MarR PF01047.22 CQR56329.1 - 0.022 14.7 0.7 0.14 12.1 0.1 2.4 3 0 0 3 3 3 0 MarR family FeoC PF09012.10 CQR56329.1 - 0.033 14.3 0.3 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_AsnC-type PF13404.6 CQR56329.1 - 0.053 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain E2_bind PF08825.10 CQR56329.1 - 0.085 13.0 0.7 3.4 7.9 0.1 2.6 1 1 0 2 2 2 0 E2 binding domain HTH_23 PF13384.6 CQR56329.1 - 0.1 12.4 0.1 0.3 10.9 0.1 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 CQR56329.1 - 0.11 12.8 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator SDH_alpha PF03313.15 CQR56330.1 - 1.9e-53 181.8 2.7 2.7e-53 181.3 2.7 1.3 1 0 0 1 1 1 1 Serine dehydratase alpha chain MmgE_PrpD PF03972.14 CQR56330.1 - 0.00093 17.8 3.5 0.0022 16.6 2.8 1.9 2 0 0 2 2 2 1 MmgE/PrpD family FdhD-NarQ PF02634.15 CQR56331.1 - 1.7e-77 260.3 0.0 2e-77 260.1 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family Radical_SAM PF04055.21 CQR56332.1 - 7.9e-12 45.9 0.1 2.3e-11 44.4 0.0 1.8 2 1 0 2 2 2 1 Radical SAM superfamily BATS PF06968.13 CQR56332.1 - 2.9e-06 27.3 0.0 0.00031 20.8 0.0 2.3 2 0 0 2 2 2 2 Biotin and Thiamin Synthesis associated domain BATS PF06968.13 CQR56333.1 - 4.4e-26 90.8 0.0 1.3e-25 89.4 0.0 1.8 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 CQR56333.1 - 1.9e-07 31.6 0.4 6.6e-07 29.9 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily RNA_pol_Rpb2_2 PF04561.14 CQR56333.1 - 0.00038 20.1 0.2 0.77 9.4 0.1 2.4 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 HydF_tetramer PF18133.1 CQR56334.1 - 1.5e-47 160.2 0.0 1.5e-46 157.0 0.0 2.2 1 1 1 2 2 2 1 Hydrogen maturase F tetramerization domain HydF_dimer PF18128.1 CQR56334.1 - 4.2e-39 132.6 0.3 1.1e-38 131.3 0.1 1.8 2 0 0 2 2 2 1 Hydrogen maturase F dimerization domain MMR_HSR1 PF01926.23 CQR56334.1 - 1.2e-21 76.9 0.0 3.7e-21 75.3 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 CQR56334.1 - 3.3e-11 43.5 0.6 1e-05 25.6 0.2 2.3 1 1 1 2 2 2 2 Dynamin family FeoB_N PF02421.18 CQR56334.1 - 3.2e-09 36.5 0.0 8.6e-09 35.1 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 CQR56334.1 - 4.8e-09 36.0 0.0 2.8e-08 33.6 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 CQR56334.1 - 3.9e-05 23.6 0.0 0.24 11.3 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 CQR56334.1 - 0.00066 19.2 0.0 0.0084 15.6 0.0 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family cobW PF02492.19 CQR56334.1 - 0.0022 17.6 0.0 0.0076 15.8 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SKA2 PF16740.5 CQR56334.1 - 0.015 15.0 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 Roc PF08477.13 CQR56334.1 - 0.015 15.5 0.0 0.15 12.3 0.0 2.2 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 CQR56334.1 - 0.019 14.3 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 AIG1 family TniB PF05621.11 CQR56334.1 - 0.093 12.1 0.0 0.81 9.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 CQR56334.1 - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Lyase_1 PF00206.20 CQR56335.1 - 1.5e-76 257.8 0.0 2e-76 257.4 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 CQR56335.1 - 2e-12 47.4 0.2 4.8e-12 46.1 0.2 1.7 1 0 0 1 1 1 1 Fumarase C C-terminus Radical_SAM PF04055.21 CQR56336.1 - 2.9e-30 105.8 0.0 4.3e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 CQR56336.1 - 1.2e-29 102.9 0.0 7.6e-28 97.0 0.0 2.2 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 CQR56336.1 - 3.8e-08 33.7 0.0 5.9e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR56336.1 - 3.7e-06 27.1 0.0 6.1e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Hydrolase PF00702.26 CQR56336.1 - 0.12 12.6 0.0 6.7 6.9 0.0 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Fer4 PF00037.27 CQR56337.1 - 3.9e-14 51.8 37.3 1.9e-08 33.8 2.8 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 CQR56337.1 - 2e-13 50.2 20.9 8.8e-08 32.2 4.8 2.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 CQR56337.1 - 4e-13 49.7 36.3 1.8e-06 28.5 9.0 2.9 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR56337.1 - 1.3e-12 47.2 33.0 2.1e-07 30.7 1.8 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 CQR56337.1 - 4.4e-10 39.5 30.0 6.2e-08 32.6 8.7 3.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 CQR56337.1 - 2.5e-09 36.7 33.9 4.1e-05 23.4 1.4 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 CQR56337.1 - 3.5e-09 37.5 20.8 0.00058 20.7 1.6 4.3 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 CQR56337.1 - 8.4e-09 35.5 15.8 1.4e-05 25.2 3.8 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 CQR56337.1 - 3.7e-08 33.7 21.4 0.00065 20.1 8.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 CQR56337.1 - 2.8e-06 27.9 43.4 0.0059 17.5 4.7 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 CQR56337.1 - 3.2e-05 24.0 33.5 0.0002 21.4 12.8 3.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR56337.1 - 0.00036 20.8 37.5 0.00049 20.4 2.3 5.3 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 CQR56337.1 - 0.00062 20.3 25.4 0.086 13.4 6.1 3.8 1 1 2 4 4 4 2 4Fe-4S dicluster domain ETF_QO PF05187.13 CQR56337.1 - 0.0065 16.6 2.5 0.0065 16.6 2.5 2.5 1 1 1 2 2 2 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 CQR56337.1 - 0.021 15.3 2.1 0.021 15.3 2.1 4.3 3 1 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 CQR56337.1 - 0.12 13.2 0.8 0.12 13.2 0.8 3.7 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fe_hyd_lg_C PF02906.14 CQR56338.1 - 3.2e-92 308.6 0.0 4.3e-92 308.2 0.0 1.1 1 0 0 1 1 1 1 Iron only hydrogenase large subunit, C-terminal domain Fe_hyd_SSU PF02256.17 CQR56338.1 - 2.7e-22 78.6 3.2 4.3e-22 77.9 3.2 1.3 1 0 0 1 1 1 1 Iron hydrogenase small subunit Fer4 PF00037.27 CQR56338.1 - 4.7e-10 38.8 22.1 5.7e-09 35.4 4.2 3.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 CQR56338.1 - 2.4e-08 34.4 26.0 8.7e-06 26.2 14.6 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR56338.1 - 2.3e-07 30.6 5.2 2.3e-07 30.6 5.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 CQR56338.1 - 4.3e-07 30.0 11.5 4.3e-07 30.0 11.5 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 CQR56338.1 - 3.7e-06 27.0 12.6 3.7e-06 27.0 12.6 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 CQR56338.1 - 5.9e-06 26.3 14.1 0.00026 21.0 2.8 2.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 CQR56338.1 - 9e-06 25.5 14.8 4e-05 23.5 4.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 CQR56338.1 - 6.6e-05 23.6 8.7 0.061 14.1 0.1 3.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.6 CQR56338.1 - 0.0001 23.1 16.1 0.00042 21.2 5.2 3.4 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 CQR56338.1 - 0.00042 20.7 9.3 0.076 13.5 1.7 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 CQR56338.1 - 0.0039 17.7 7.5 0.75 10.4 0.1 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 CQR56338.1 - 0.0045 17.8 8.4 0.31 11.9 0.7 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR56338.1 - 0.0052 17.2 2.4 0.0052 17.2 2.4 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 CQR56338.1 - 0.47 11.0 16.1 0.9 10.1 3.5 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 CQR56338.1 - 2.9 8.1 12.0 57 4.0 12.3 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 CQR56339.1 - 1.3e-12 48.1 23.7 8.2e-07 29.5 7.3 3.9 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 CQR56339.1 - 1e-11 44.1 43.2 2.1e-08 33.6 5.3 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_16 PF13484.6 CQR56339.1 - 4.3e-10 40.4 25.4 4.3e-05 24.3 1.4 4.3 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 CQR56339.1 - 5.7e-10 38.8 42.9 1.1e-06 28.5 5.3 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_11 PF13247.6 CQR56339.1 - 4.7e-09 36.3 4.7 4.7e-09 36.3 4.7 3.5 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 CQR56339.1 - 6.6e-09 35.8 29.6 7.4e-05 22.8 13.8 3.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 CQR56339.1 - 3.4e-08 33.8 22.1 0.00018 21.9 5.6 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 CQR56339.1 - 2.3e-07 30.8 31.3 0.00023 21.2 15.1 4.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 CQR56339.1 - 3.2e-06 27.2 26.2 6e-05 23.1 10.0 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR56339.1 - 1.9e-05 24.8 37.1 0.0012 19.1 2.3 5.4 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 CQR56339.1 - 2.8e-05 23.9 2.3 2.8e-05 23.9 2.3 5.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_3 PF12798.7 CQR56339.1 - 0.0025 18.6 44.2 0.041 14.8 5.7 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 CQR56339.1 - 0.003 18.1 24.6 0.12 13.0 1.4 4.3 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 CQR56339.1 - 0.02 15.6 0.8 0.02 15.6 0.8 4.2 3 1 0 3 3 3 0 4Fe-4S single cluster domain ETF_QO PF05187.13 CQR56339.1 - 0.071 13.3 9.9 0.16 12.1 1.0 2.9 3 0 0 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S DUF3756 PF12581.8 CQR56339.1 - 0.55 10.2 5.6 11 6.0 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3756) Molybdopterin PF00384.22 CQR56340.1 - 3e-97 326.3 0.0 3.9e-97 325.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 CQR56340.1 - 1.9e-27 95.5 0.0 4.1e-27 94.4 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 CQR56340.1 - 4.5e-13 49.0 0.1 9.7e-13 47.9 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain PUA_3 PF17785.1 CQR56340.1 - 0.097 12.5 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 PUA-like domain DUF2294 PF10057.9 CQR56341.1 - 9.5e-07 28.9 0.0 1.1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2294) NAD_binding_2 PF03446.15 CQR56342.1 - 1.4e-43 148.8 0.1 2.2e-43 148.2 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 CQR56342.1 - 1.1e-22 80.8 0.8 2.9e-22 79.4 0.7 2.1 1 1 1 2 2 2 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 CQR56342.1 - 1.2e-06 29.0 0.2 2.6e-06 27.9 0.2 1.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 CQR56342.1 - 6.1e-05 22.7 0.0 0.00067 19.3 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_11 PF14833.6 CQR56342.1 - 6.3e-05 23.2 0.2 0.00014 22.1 0.0 1.7 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 CQR56342.1 - 6.4e-05 22.9 0.2 0.00016 21.6 0.1 1.8 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR56342.1 - 0.00032 20.9 0.2 0.0009 19.5 0.1 2.0 2 1 0 2 2 1 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 CQR56342.1 - 0.0016 18.4 0.1 0.46 10.4 0.1 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 CQR56342.1 - 0.0047 16.3 0.1 0.0074 15.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 CQR56342.1 - 0.011 15.5 0.3 0.03 14.2 0.4 1.7 1 1 0 1 1 1 0 Rossmann-like domain CoA_binding PF02629.19 CQR56342.1 - 0.014 16.0 0.0 0.025 15.3 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA PF01408.22 CQR56342.1 - 0.034 14.9 0.0 0.063 14.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 CQR56342.1 - 0.045 13.3 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 CQR56342.1 - 0.11 12.2 0.4 0.27 10.9 0.3 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 CQR56342.1 - 0.12 12.5 0.1 1 9.4 0.1 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 CQR56342.1 - 0.12 12.2 0.0 0.98 9.3 0.1 2.1 2 0 0 2 2 2 0 NAD(P)H-binding G6PD_C PF02781.16 CQR56343.1 - 7.8e-97 324.0 0.0 1e-96 323.6 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, C-terminal domain G6PD_N PF00479.22 CQR56343.1 - 8.1e-57 192.7 0.0 2.2e-56 191.3 0.0 1.7 2 0 0 2 2 2 1 Glucose-6-phosphate dehydrogenase, NAD binding domain HxlR PF01638.17 CQR56344.1 - 4.5e-28 96.9 0.2 5.2e-28 96.7 0.2 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 CQR56344.1 - 0.0025 17.8 0.0 0.0033 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 CQR56344.1 - 0.06 13.9 0.0 0.11 13.0 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 CQR56344.1 - 0.13 12.3 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation RNA_pol_Rpb4 PF03874.16 CQR56344.1 - 0.14 12.5 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb4 DUF4516 PF14990.6 CQR56344.1 - 0.21 11.3 0.1 0.49 10.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) Glyco_hydro_43 PF04616.14 CQR56345.1 - 7.1e-99 330.7 0.6 7.1e-99 330.7 0.6 2.0 3 0 0 3 3 3 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR56345.1 - 2.7e-55 187.2 0.0 5e-55 186.4 0.0 1.5 2 0 0 2 2 2 1 Beta xylosidase C-terminal Concanavalin A-like domain DUF1349 PF07081.11 CQR56345.1 - 1.8e-05 24.5 0.0 3.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) HTH_18 PF12833.7 CQR56346.1 - 5.1e-21 74.7 0.1 8.8e-21 74.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56346.1 - 3.4e-18 65.3 0.3 2.8e-08 33.6 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR56346.1 - 5.3e-12 45.8 2.0 1.3e-11 44.5 2.0 1.8 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR56346.1 - 1.4e-06 27.9 0.1 2.4e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Rrf2 PF02082.20 CQR56346.1 - 0.0013 19.0 0.0 0.0027 18.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 CQR56346.1 - 0.019 14.8 0.0 0.067 13.0 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.7 CQR56346.1 - 0.02 14.8 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 CQR56346.1 - 0.041 14.2 0.2 0.11 12.8 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Cir_Bir_Yir PF06022.11 CQR56346.1 - 0.053 13.0 0.7 0.091 12.2 0.2 1.6 2 0 0 2 2 2 0 Plasmodium variant antigen protein Cir/Yir/Bir Ectoine_synth PF06339.12 CQR56346.1 - 0.1 12.8 0.5 0.17 12.1 0.5 1.3 1 0 0 1 1 1 0 Ectoine synthase HTH_3 PF01381.22 CQR56346.1 - 0.17 11.9 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Glyco_hydro_28 PF00295.17 CQR56347.1 - 6.2e-13 48.5 0.2 1.2e-12 47.6 0.2 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 28 Beta_helix PF13229.6 CQR56347.1 - 0.0058 16.5 3.0 0.0058 16.5 3.0 2.3 1 1 1 2 2 2 1 Right handed beta helix region NosD PF05048.13 CQR56347.1 - 0.025 13.8 0.1 0.083 12.1 0.1 1.8 1 1 0 1 1 1 0 Periplasmic copper-binding protein (NosD) Glyco_hydro_88 PF07470.13 CQR56348.1 - 5.3e-28 98.1 4.7 6.1e-28 97.9 4.7 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 CQR56348.1 - 0.0096 14.5 0.0 0.14 10.6 0.0 2.1 2 0 0 2 2 2 1 Beta-L-arabinofuranosidase, GH127 C5-epim_C PF06662.13 CQR56348.1 - 0.014 14.9 0.2 0.56 9.7 0.1 2.4 1 1 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus DUF4934 PF16288.5 CQR56348.1 - 0.13 12.2 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) DUF4180 PF13788.6 CQR56349.1 - 5.7e-29 100.3 0.0 6.5e-29 100.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4180) PadR PF03551.14 CQR56350.1 - 1.6e-09 37.6 0.0 2.8e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Vir_act_alpha_C PF10400.9 CQR56350.1 - 7.3e-06 26.6 0.1 1.2e-05 25.9 0.1 1.4 1 0 0 1 1 1 1 Virulence activator alpha C-term RTP PF02334.16 CQR56350.1 - 0.024 15.3 0.0 0.041 14.5 0.0 1.4 1 0 0 1 1 1 0 Replication terminator protein TrmB PF01978.19 CQR56350.1 - 0.15 11.9 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Glyco_hydro_52 PF03512.13 CQR56351.1 - 5.2e-171 569.1 0.0 6.4e-171 568.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 52 HTH_18 PF12833.7 CQR56352.1 - 1.8e-23 82.6 0.1 5.4e-23 81.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56352.1 - 3e-21 75.0 0.0 1.6e-09 37.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR56352.1 - 3.7e-11 43.1 0.0 7.4e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR56352.1 - 4.8e-07 29.4 0.0 7.5e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_N PF06719.13 CQR56352.1 - 0.00019 21.1 0.0 0.00033 20.3 0.0 1.4 1 1 0 1 1 1 1 AraC-type transcriptional regulator N-terminus DMSP_lyase PF16867.5 CQR56352.1 - 0.0024 17.6 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase HTH_23 PF13384.6 CQR56352.1 - 0.013 15.3 0.0 8.8 6.3 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain DUF4863 PF16155.5 CQR56352.1 - 0.033 14.0 0.1 0.054 13.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) HTH_38 PF13936.6 CQR56352.1 - 0.038 13.8 0.3 6.9 6.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain EutQ PF06249.12 CQR56352.1 - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ BPD_transp_1 PF00528.22 CQR56353.1 - 3.6e-19 69.2 8.2 3.6e-19 69.2 8.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component IlvGEDA_leader PF08046.11 CQR56353.1 - 0.017 14.5 0.5 0.043 13.2 0.5 1.7 1 0 0 1 1 1 0 IlvGEDA operon leader peptide Zip PF02535.22 CQR56353.1 - 2 7.5 9.9 0.045 13.0 0.7 2.4 3 0 0 3 3 3 0 ZIP Zinc transporter 7TM_GPCR_Srh PF10318.9 CQR56353.1 - 6.8 5.6 14.6 0.14 11.2 6.3 2.2 2 2 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srh BPD_transp_1 PF00528.22 CQR56354.1 - 2.1e-19 70.0 14.5 2.1e-19 70.0 14.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR56355.1 - 9.6e-22 78.3 15.8 1.7e-21 77.5 15.8 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR56355.1 - 1.1e-20 74.6 11.6 1.1e-20 74.6 11.6 2.3 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein LPAM_2 PF13627.6 CQR56355.1 - 1.4 8.9 4.2 2.4 8.1 4.2 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site SBP_bac_8 PF13416.6 CQR56356.1 - 4.6e-16 59.5 3.5 6.6e-16 58.9 3.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR56356.1 - 1.7e-14 54.5 5.1 2.5e-14 54.0 5.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR56357.1 - 1.1e-19 70.5 0.8 1.1e-19 70.5 0.8 1.8 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR56357.1 - 6.1e-16 59.0 1.8 1.3e-15 57.9 1.8 1.5 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR56357.1 - 5.8e-15 55.4 0.6 1.3e-14 54.2 0.6 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR56357.1 - 1.3e-07 32.1 0.1 2.8e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR56357.1 - 0.0011 18.9 0.0 0.0024 17.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR56357.1 - 0.0014 18.4 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3855 PF12967.7 CQR56357.1 - 0.039 13.9 0.1 0.076 13.0 0.1 1.4 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3855) Response_reg PF00072.24 CQR56358.1 - 3.9e-25 88.2 0.0 9.7e-25 86.9 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR56358.1 - 1.4e-21 76.5 1.3 2.2e-21 75.9 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR56358.1 - 2.7e-14 53.4 0.5 3.2e-13 49.9 0.0 2.6 3 0 0 3 3 3 1 GGDEF-like domain HTH_AraC PF00165.23 CQR56358.1 - 2.4e-12 46.6 0.2 8.2e-06 25.8 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Utp13 PF08625.11 CQR56358.1 - 0.42 10.5 2.9 5.1 7.0 0.4 3.0 3 0 0 3 3 3 0 Utp13 specific WD40 associated domain Glyco_hydro_2_N PF02837.18 CQR56359.1 - 2e-26 92.9 0.3 6.7e-26 91.2 0.3 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 CQR56359.1 - 2.5e-11 43.2 0.1 6.1e-10 38.7 0.1 2.4 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.21 CQR56359.1 - 1.3e-06 29.0 0.0 2.8e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 CQR56359.1 - 0.017 15.7 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 Beta-galactosidase jelly roll domain BPD_transp_1 PF00528.22 CQR56360.1 - 7.7e-17 61.6 11.8 7.7e-17 61.6 11.8 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR56361.1 - 5.2e-23 81.7 18.3 5.2e-23 81.7 18.3 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ribosomal_S12 PF17487.2 CQR56361.1 - 0.041 14.6 0.0 0.041 14.6 0.0 2.7 3 0 0 3 3 3 0 Ribosomal protein S12 SBP_bac_8 PF13416.6 CQR56362.1 - 2.9e-34 119.2 8.2 4e-34 118.7 8.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR56362.1 - 7.4e-30 105.0 12.6 1.1e-29 104.4 12.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR56362.1 - 1.3e-05 24.7 0.7 0.0051 16.3 0.0 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein HTH_5 PF01022.20 CQR56363.1 - 4.7e-07 29.6 0.2 9e-07 28.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR56363.1 - 8.1e-06 25.8 0.7 1.3e-05 25.1 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR56363.1 - 1.4e-05 24.9 0.3 2.9e-05 23.9 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR56363.1 - 0.0023 17.4 0.2 0.0044 16.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.11 CQR56363.1 - 0.0094 15.8 0.3 0.016 15.0 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF742) MarR PF01047.22 CQR56363.1 - 0.023 14.6 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 CQR56363.1 - 0.044 13.7 0.3 0.11 12.4 0.3 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 CQR56363.1 - 0.054 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_47 PF16221.5 CQR56363.1 - 0.17 11.4 0.2 0.32 10.6 0.2 1.4 1 0 0 1 1 1 0 winged helix-turn-helix DUF218 PF02698.17 CQR56364.1 - 2.8e-32 111.5 0.0 3.5e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 DUF218 domain DUF4131 PF13567.6 CQR56364.1 - 0.01 15.5 0.9 0.014 15.1 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1772 PF08592.11 CQR56364.1 - 0.045 14.1 0.1 0.078 13.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) ABC2_membrane_4 PF12730.7 CQR56365.1 - 1.5e-26 93.5 10.5 2.4e-26 92.8 10.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR56365.1 - 2.2e-12 46.8 25.5 5.8e-11 42.2 22.2 2.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR56365.1 - 0.00029 20.4 18.4 0.00029 20.4 18.4 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein Cytochrom_B558a PF05038.13 CQR56365.1 - 0.11 12.1 0.3 0.11 12.1 0.3 1.8 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit ABC_tran PF00005.27 CQR56366.1 - 2e-29 102.8 0.0 4e-29 101.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56366.1 - 3.7e-08 33.5 1.6 1.4e-05 25.1 0.0 2.5 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56366.1 - 0.0048 17.2 0.2 0.066 13.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 CQR56366.1 - 0.026 14.1 0.3 0.057 13.1 0.3 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 CQR56366.1 - 0.065 13.7 0.2 0.15 12.6 0.2 1.5 1 0 0 1 1 1 0 AAA domain DUF4224 PF13986.6 CQR56366.1 - 0.07 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Thymidylate_kin PF02223.17 CQR56366.1 - 0.097 12.3 0.2 0.51 10.0 0.1 2.2 2 1 0 2 2 2 0 Thymidylate kinase Arf PF00025.21 CQR56366.1 - 0.098 12.1 0.4 0.33 10.4 0.1 2.0 2 1 0 2 2 2 0 ADP-ribosylation factor family HATPase_c PF02518.26 CQR56367.1 - 9.2e-20 71.2 0.0 1.4e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56367.1 - 7.9e-13 48.2 0.0 1.3e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR56367.1 - 0.00033 21.0 0.1 0.0018 18.6 0.0 2.2 2 1 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 CQR56367.1 - 0.0033 17.3 0.0 0.0062 16.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IKBKB_SDD PF18397.1 CQR56367.1 - 0.006 15.9 0.1 0.0081 15.5 0.1 1.1 1 0 0 1 1 1 1 IQBAL scaffold dimerization domain HATPase_c_5 PF14501.6 CQR56367.1 - 0.014 15.3 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain U3_assoc_6 PF08640.11 CQR56367.1 - 0.085 12.9 1.4 0.25 11.5 0.0 2.2 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Ribosomal_L5_C PF00673.21 CQR56367.1 - 0.15 12.2 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 ribosomal L5P family C-terminus PIG-P PF08510.12 CQR56367.1 - 0.22 11.4 1.9 0.37 10.7 1.7 1.5 1 1 0 1 1 1 0 PIG-P Response_reg PF00072.24 CQR56368.1 - 4.7e-29 100.8 0.8 6.5e-29 100.4 0.8 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56368.1 - 1.8e-26 92.0 0.0 3.2e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 CQR56368.1 - 0.011 15.2 0.7 0.11 12.0 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family OKR_DC_1_N PF03709.15 CQR56368.1 - 0.032 14.5 0.1 0.07 13.4 0.1 1.6 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain FleQ PF06490.11 CQR56368.1 - 0.14 12.5 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ tRNA_edit PF04073.15 CQR56369.1 - 2.1e-20 73.0 0.1 2.7e-20 72.7 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain YolD PF08863.10 CQR56370.1 - 2.9e-10 40.0 0.0 3.1e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 YolD-like protein DinB_2 PF12867.7 CQR56371.1 - 2.9e-18 66.6 0.8 3.3e-18 66.4 0.8 1.1 1 0 0 1 1 1 1 DinB superfamily MDMPI_N PF11716.8 CQR56371.1 - 3.1e-07 31.2 0.0 3.9e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Mycothiol maleylpyruvate isomerase N-terminal domain DinB PF05163.12 CQR56371.1 - 6.7e-05 22.9 0.5 0.00012 22.1 0.5 1.4 1 1 0 1 1 1 1 DinB family DUF664 PF04978.12 CQR56371.1 - 0.082 13.3 0.1 0.19 12.2 0.0 1.5 1 1 0 2 2 2 0 Protein of unknown function (DUF664) AHSA1 PF08327.11 CQR56372.1 - 2.8e-13 50.2 0.0 4.9e-13 49.4 0.0 1.4 2 0 0 2 2 2 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 CQR56372.1 - 0.00041 20.7 0.0 0.00083 19.7 0.0 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport KduI PF04962.12 CQR56374.1 - 3.2e-33 115.1 0.1 5.1e-33 114.5 0.1 1.3 1 0 0 1 1 1 1 KduI/IolB family DeoRC PF00455.22 CQR56375.1 - 1.5e-41 142.0 0.3 2.3e-41 141.4 0.3 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 CQR56375.1 - 2.9e-18 65.3 0.4 5.9e-18 64.4 0.4 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR56375.1 - 8.5e-09 35.2 0.1 2.3e-08 33.8 0.1 1.7 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 CQR56375.1 - 7.8e-06 25.5 0.1 1.6e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 CQR56375.1 - 1.3e-05 24.9 0.1 3e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 CQR56375.1 - 3e-05 23.5 1.0 0.0013 18.3 0.2 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 CQR56375.1 - 5.5e-05 23.1 0.5 0.0037 17.3 0.0 2.7 3 0 0 3 3 2 1 Helix-turn-helix domain TrmB PF01978.19 CQR56375.1 - 0.00013 21.8 0.1 0.00037 20.3 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 CQR56375.1 - 0.0003 20.6 0.2 0.001 18.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.11 CQR56375.1 - 0.0012 18.9 0.8 0.0031 17.5 0.2 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 CQR56375.1 - 0.0017 18.3 0.1 0.0039 17.1 0.1 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 CQR56375.1 - 0.0024 18.1 0.2 0.0066 16.6 0.1 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S25 PF03297.15 CQR56375.1 - 0.0033 17.6 1.4 0.0067 16.6 0.1 2.1 3 0 0 3 3 2 1 S25 ribosomal protein Rrf2 PF02082.20 CQR56375.1 - 0.0034 17.7 0.2 0.03 14.7 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator TFIIE_alpha PF02002.17 CQR56375.1 - 0.0036 17.1 0.7 0.0074 16.1 0.7 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.6 CQR56375.1 - 0.015 15.5 0.1 0.034 14.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DDRGK PF09756.9 CQR56375.1 - 0.017 14.7 0.3 0.029 14.0 0.3 1.2 1 0 0 1 1 1 0 DDRGK domain EAP30 PF04157.16 CQR56375.1 - 0.026 13.8 0.1 0.05 12.9 0.1 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_12 PF08461.10 CQR56375.1 - 0.028 14.4 0.1 0.066 13.2 0.1 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Penicillinase_R PF03965.16 CQR56375.1 - 0.048 14.0 0.0 0.085 13.2 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 CQR56375.1 - 0.1 13.1 0.8 0.26 11.8 0.2 2.0 3 0 0 3 3 1 0 Winged helix DNA-binding domain HxlR PF01638.17 CQR56375.1 - 0.12 12.3 0.3 0.3 11.0 0.2 1.6 2 0 0 2 2 1 0 HxlR-like helix-turn-helix DUF2250 PF10007.9 CQR56375.1 - 0.12 12.5 0.1 0.27 11.4 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) SgrR_N PF12793.7 CQR56375.1 - 0.12 12.6 0.1 0.25 11.6 0.1 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term adh_short_C2 PF13561.6 CQR56376.1 - 6.7e-57 192.7 1.6 7.6e-57 192.6 1.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR56376.1 - 1.6e-52 177.8 1.0 1.9e-52 177.6 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR56376.1 - 1.6e-09 37.9 0.4 2e-09 37.6 0.4 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR56376.1 - 0.12 11.8 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.13 CQR56376.1 - 0.22 11.1 1.4 0.3 10.6 1.4 1.2 1 0 0 1 1 1 0 NmrA-like family ABC2_membrane_2 PF12679.7 CQR56377.1 - 2.5e-07 30.3 26.8 9e-06 25.2 6.8 2.4 1 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR56377.1 - 0.0026 17.7 37.4 0.012 15.6 0.6 4.5 2 2 2 4 4 4 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR56377.1 - 0.0048 16.1 12.6 0.0048 16.1 12.6 3.1 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR56377.1 - 0.12 11.9 31.1 0.0094 15.5 7.8 3.5 2 2 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 CQR56378.1 - 3.6e-31 108.5 0.1 9.9e-31 107.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR56378.1 - 1.4e-13 51.3 0.1 7.9e-09 35.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR56378.1 - 0.00011 22.1 0.0 0.32 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 CQR56378.1 - 0.00043 20.6 0.3 0.0024 18.2 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR56378.1 - 0.0016 18.2 0.1 0.0048 16.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR56378.1 - 0.0026 18.1 0.0 0.006 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR56378.1 - 0.023 15.2 0.4 0.044 14.3 0.4 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 CQR56378.1 - 0.029 14.0 0.0 0.49 10.1 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_29 PF13555.6 CQR56378.1 - 0.042 13.6 0.1 0.087 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 CQR56378.1 - 0.11 12.7 0.3 0.49 10.6 0.3 1.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 CQR56378.1 - 0.11 11.9 0.2 9.5 5.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF3584 PF12128.8 CQR56378.1 - 0.22 9.0 0.2 0.32 8.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HTH_19 PF12844.7 CQR56379.1 - 1.5e-15 57.0 0.1 1.7e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR56379.1 - 7.8e-15 54.7 0.2 8.9e-15 54.5 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR56379.1 - 1.3e-08 35.0 0.0 1.5e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR56379.1 - 5.5e-08 33.1 0.0 6.3e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 CQR56379.1 - 3e-06 27.0 1.5 4.1e-06 26.6 1.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 CQR56379.1 - 0.0012 18.7 0.3 0.0017 18.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR56379.1 - 0.0039 17.1 0.8 0.0059 16.5 0.8 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 CQR56379.1 - 0.004 16.9 0.3 0.0078 16.0 0.3 1.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 CQR56379.1 - 0.0053 16.3 0.1 0.0077 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 CQR56379.1 - 0.011 15.3 1.7 0.022 14.3 1.7 1.4 2 0 0 2 2 2 0 Sigma-70, region 4 Troponin PF00992.20 CQR56379.1 - 0.017 15.4 0.8 0.019 15.3 0.8 1.1 1 0 0 1 1 1 0 Troponin HTH_Crp_2 PF13545.6 CQR56379.1 - 0.02 14.9 0.2 0.029 14.3 0.2 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 CQR56379.1 - 0.026 14.4 0.1 0.042 13.8 0.1 1.2 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 CQR56379.1 - 0.027 14.4 0.1 0.037 13.9 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 CQR56379.1 - 0.033 14.0 0.2 0.047 13.5 0.2 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PIN_2 PF10130.9 CQR56379.1 - 0.069 13.4 0.0 0.071 13.3 0.0 1.1 1 0 0 1 1 1 0 PIN domain CUTL PF16557.5 CQR56379.1 - 0.083 13.1 0.0 0.093 12.9 0.0 1.1 1 0 0 1 1 1 0 CUT1-like DNA-binding domain of SATB GntR PF00392.21 CQR56379.1 - 0.098 12.3 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family YdaS_antitoxin PF15943.5 CQR56379.1 - 0.15 11.9 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MgtE PF01769.16 CQR56380.1 - 0.02 15.2 3.9 0.02 15.2 3.9 2.1 2 0 0 2 2 2 0 Divalent cation transporter MFS_1 PF07690.16 CQR56380.1 - 0.034 13.1 10.2 0.02 13.8 2.0 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily NiFe_hyd_3_EhaA PF17367.2 CQR56380.1 - 0.038 14.1 6.0 0.072 13.2 0.1 2.3 2 0 0 2 2 2 0 NiFe-hydrogenase-type-3 Eha complex subunit A UCR_TM PF02921.14 CQR56380.1 - 1.3 9.6 0.1 1.3 9.6 0.1 2.2 2 1 0 2 2 2 0 Ubiquinol cytochrome reductase transmembrane region DUF4231 PF14015.6 CQR56380.1 - 2.7 8.5 8.3 9 6.8 2.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) NUDIX PF00293.28 CQR56381.1 - 2.9e-05 24.1 0.0 4.5e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Glyco_hydro_42 PF02449.15 CQR56382.1 - 1.8e-147 491.6 7.9 2.4e-147 491.2 7.9 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 CQR56382.1 - 2.4e-66 223.2 0.0 4.6e-66 222.3 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_42C PF08533.10 CQR56382.1 - 8.5e-07 28.6 0.0 1.6e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain Cellulase PF00150.18 CQR56382.1 - 0.012 15.0 1.1 0.019 14.4 0.1 1.8 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_2_C PF02836.17 CQR56382.1 - 1 8.4 4.9 0.2 10.7 0.4 2.1 3 0 0 3 3 3 0 Glycosyl hydrolases family 2, TIM barrel domain HTH_18 PF12833.7 CQR56383.1 - 2.9e-23 81.9 0.1 4.7e-23 81.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56383.1 - 5.6e-19 67.8 0.0 8.3e-10 38.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR56383.1 - 3.3e-09 36.8 0.4 6.5e-09 35.8 0.4 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR56383.1 - 0.0037 16.9 0.1 0.008 15.9 0.1 1.5 1 0 0 1 1 1 1 Cupin domain HTH_24 PF13412.6 CQR56383.1 - 0.06 12.9 0.1 0.27 10.8 0.2 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Na_H_Exchanger PF00999.21 CQR56384.1 - 6.4e-53 179.9 38.2 8.2e-53 179.6 38.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Mad3_BUB1_I PF08311.12 CQR56384.1 - 0.016 15.2 0.6 0.03 14.3 0.6 1.5 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 MIT PF04212.18 CQR56384.1 - 0.087 12.9 0.3 0.21 11.7 0.3 1.6 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain PspC PF04024.12 CQR56384.1 - 3 7.8 5.7 1.1 9.1 0.2 2.9 2 1 0 2 2 2 0 PspC domain DUF2062 PF09835.9 CQR56384.1 - 5.5 6.8 13.6 4.7 7.1 10.5 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) ABC_membrane PF00664.23 CQR56385.1 - 5.6e-54 183.6 5.2 8e-54 183.1 5.2 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR56385.1 - 2.5e-33 115.5 0.0 4.3e-33 114.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR56385.1 - 0.00032 20.2 0.3 0.011 15.1 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR56385.1 - 0.00039 20.7 0.0 0.0019 18.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 CQR56385.1 - 0.00048 19.5 0.0 0.00086 18.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.23 CQR56385.1 - 0.00054 20.0 0.1 0.0023 18.0 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_24 PF13479.6 CQR56385.1 - 0.0016 18.2 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR56385.1 - 0.0026 17.7 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase DUF87 PF01935.17 CQR56385.1 - 0.0036 17.4 0.0 0.009 16.1 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA PF00004.29 CQR56385.1 - 0.013 15.9 0.1 0.26 11.7 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 CQR56385.1 - 0.016 15.7 0.0 0.033 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR56385.1 - 0.021 15.2 0.1 0.054 13.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CQR56385.1 - 0.045 13.5 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 CQR56385.1 - 0.061 13.1 0.4 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 CQR56385.1 - 0.067 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 CQR56385.1 - 0.092 12.5 0.4 0.42 10.3 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 CQR56385.1 - 0.096 12.5 0.1 6.3 6.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_7 PF12775.7 CQR56385.1 - 0.18 11.3 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Roc PF08477.13 CQR56385.1 - 0.2 11.9 0.1 0.52 10.5 0.0 1.7 2 0 0 2 2 1 0 Ras of Complex, Roc, domain of DAPkinase ABC_membrane PF00664.23 CQR56386.1 - 3.3e-48 164.7 11.5 4.4e-48 164.3 11.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR56386.1 - 1.2e-32 113.2 0.0 2.1e-32 112.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR56386.1 - 2.8e-07 30.2 0.0 2.6e-05 23.8 0.0 2.6 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR56386.1 - 0.0077 16.6 0.4 0.021 15.2 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR56386.1 - 0.0096 15.6 0.1 0.033 13.9 0.1 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR56386.1 - 0.013 15.4 0.0 0.042 13.8 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 CQR56386.1 - 0.021 14.9 0.1 0.045 13.8 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain ABC_ATPase PF09818.9 CQR56386.1 - 0.022 13.6 0.1 0.045 12.5 0.1 1.5 1 0 0 1 1 1 0 Predicted ATPase of the ABC class LysR_substrate PF03466.20 CQR56387.1 - 7.1e-38 130.1 0.0 1e-37 129.5 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR56387.1 - 1e-22 79.9 0.2 2.1e-22 78.8 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 CQR56387.1 - 0.015 15.2 0.0 0.065 13.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family APOBEC4_like PF18774.1 CQR56387.1 - 0.071 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 APOBEC4-like -AID/APOBEC-deaminase HTH_20 PF12840.7 CQR56387.1 - 0.16 12.0 0.3 0.75 9.9 0.0 2.2 2 1 1 3 3 3 0 Helix-turn-helix domain HSP90 PF00183.18 CQR56388.1 - 3.1e-115 386.0 24.8 8.4e-109 364.8 19.4 2.3 1 1 1 2 2 2 2 Hsp90 protein HATPase_c_3 PF13589.6 CQR56388.1 - 2e-13 50.3 0.8 8.9e-13 48.2 0.5 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 CQR56388.1 - 1.5e-10 41.5 0.1 3.3e-10 40.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1796 PF08795.10 CQR56389.1 - 6.1e-24 84.9 0.0 9.3e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Putative papain-like cysteine peptidase (DUF1796) Glycos_transf_2 PF00535.26 CQR56390.1 - 8.3e-34 116.8 0.0 1.4e-33 116.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR56390.1 - 4.2e-17 62.8 0.0 8.5e-17 61.8 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR56390.1 - 1.8e-15 57.2 0.1 3e-14 53.2 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR56390.1 - 0.00089 19.7 0.7 0.002 18.6 0.1 1.9 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 CQR56390.1 - 0.11 12.4 0.1 1.5 8.7 0.1 2.1 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Lactamase_B PF00753.27 CQR56391.1 - 1.2e-18 67.9 0.1 2.2e-18 67.0 0.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily LysR_substrate PF03466.20 CQR56392.1 - 1e-53 181.8 0.2 1.2e-53 181.5 0.2 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR56392.1 - 5.1e-21 74.4 0.0 1.3e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DHDPS PF00701.22 CQR56393.1 - 7.1e-70 235.0 0.0 8.5e-70 234.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DeoC PF01791.9 CQR56393.1 - 0.027 14.1 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 DeoC/LacD family aldolase Peripla_BP_4 PF13407.6 CQR56393.1 - 0.066 12.8 0.2 0.12 11.9 0.1 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain Atu4866 PF11512.8 CQR56394.1 - 0.25 11.7 1.2 39 4.7 0.1 2.7 1 1 1 2 2 2 0 Agrobacterium tumefaciens protein Atu4866 DEAD PF00270.29 CQR56395.1 - 2.9e-53 180.2 1.7 3.8e-53 179.8 0.4 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR56395.1 - 4.6e-30 104.2 4.3 9.3e-28 96.8 1.2 2.6 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 CQR56395.1 - 9.4e-09 35.5 0.1 4.1e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 CQR56395.1 - 0.00015 22.2 0.5 0.06 13.7 0.1 2.3 2 0 0 2 2 2 2 AAA domain UTP25 PF06862.12 CQR56395.1 - 0.0044 15.8 1.1 1.4 7.6 0.0 3.3 2 1 1 3 3 3 1 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 SUa-2TM PF18179.1 CQR56395.1 - 0.013 14.8 0.1 0.023 14.0 0.1 1.3 1 0 0 1 1 1 0 SMODS- and Ubiquitin system-associated 2TM effector domain AAA_22 PF13401.6 CQR56395.1 - 0.16 12.2 2.1 1.3 9.3 2.1 2.4 1 1 0 1 1 1 0 AAA domain YmaF PF12788.7 CQR56396.1 - 6.9e-39 132.3 8.3 8.5e-39 132.0 8.3 1.1 1 0 0 1 1 1 1 YmaF family PTAC PF06130.12 CQR56397.1 - 3.2e-49 165.0 0.0 3.9e-30 103.8 0.0 2.2 2 0 0 2 2 2 2 Phosphate propanoyltransferase Peptidase_M19 PF01244.21 CQR56398.1 - 1.7e-73 247.6 0.0 2e-73 247.3 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 CQR56398.1 - 0.051 13.3 0.0 0.16 11.8 0.0 1.8 1 1 0 1 1 1 0 Amidohydrolase SpoVS PF04232.12 CQR56399.1 - 9.7e-40 134.2 0.9 1.1e-39 134.1 0.9 1.0 1 0 0 1 1 1 1 Stage V sporulation protein S (SpoVS) YmdB PF13277.6 CQR56400.1 - 7.5e-95 317.1 0.0 8.4e-95 316.9 0.0 1.0 1 0 0 1 1 1 1 YmdB-like protein TrkA_N PF02254.18 CQR56400.1 - 0.14 12.4 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF3552 PF12072.8 CQR56401.1 - 5.3e-71 238.2 34.6 5.3e-71 238.2 34.6 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3552) HD PF01966.22 CQR56401.1 - 1.4e-17 64.1 3.3 1.4e-17 64.1 3.3 3.2 2 1 1 3 3 3 1 HD domain KH_1 PF00013.29 CQR56401.1 - 1.1e-06 28.3 0.1 1.1e-06 28.3 0.1 2.4 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 CQR56401.1 - 8.9e-06 25.5 1.1 0.00011 22.0 0.1 3.2 2 1 0 2 2 2 1 KH domain HDOD PF08668.12 CQR56401.1 - 2.8e-05 23.7 0.1 0.007 15.9 0.2 2.8 2 1 0 2 2 2 1 HDOD domain KH_2 PF07650.17 CQR56401.1 - 0.022 14.6 0.4 0.022 14.6 0.4 5.4 6 1 1 7 7 7 0 KH domain DUF4083 PF13314.6 CQR56401.1 - 0.32 11.0 2.9 0.31 11.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Innexin PF00876.18 CQR56401.1 - 0.35 10.1 2.6 1.2 8.3 2.6 2.0 1 1 0 1 1 1 0 Innexin DUF262 PF03235.14 CQR56401.1 - 1.1 9.4 8.2 2.6 8.1 8.2 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF262 Exonuc_VII_L PF02601.15 CQR56401.1 - 1.8 8.1 14.5 6.7 6.2 14.9 1.8 2 0 0 2 2 2 0 Exonuclease VII, large subunit V-ATPase_G PF03179.15 CQR56401.1 - 9.4 6.8 39.6 15 6.2 24.4 3.8 2 1 1 3 3 2 0 Vacuolar (H+)-ATPase G subunit ApoO PF09769.9 CQR56401.1 - 9.7 6.2 7.8 1.4 8.8 2.3 2.5 3 0 0 3 3 3 0 Apolipoprotein O RecX PF02631.16 CQR56402.1 - 3.7e-29 101.7 2.0 8e-29 100.6 2.0 1.5 1 0 0 1 1 1 1 RecX family DUF4258 PF14076.6 CQR56402.1 - 0.11 12.9 3.0 3.6 8.0 0.2 3.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4258) XisI PF08869.11 CQR56402.1 - 0.14 12.5 1.6 3.3 8.1 0.1 2.7 2 2 1 3 3 3 0 XisI protein RecA PF00154.21 CQR56403.1 - 3.1e-147 489.1 3.3 3.9e-147 488.8 3.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 CQR56403.1 - 1.9e-09 37.2 0.2 2.2e-08 33.7 0.1 2.3 2 1 0 2 2 2 1 Rad51 ATPase PF06745.13 CQR56403.1 - 6.2e-07 29.0 0.6 1.4e-05 24.5 0.6 2.7 1 1 0 1 1 1 1 KaiC ATPase_2 PF01637.18 CQR56403.1 - 2.3e-05 24.5 0.0 4.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 CQR56403.1 - 0.00011 22.0 0.0 0.0002 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR56403.1 - 0.0014 18.3 0.8 0.044 13.4 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 CQR56403.1 - 0.0034 17.8 0.1 0.0074 16.7 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 CQR56403.1 - 0.018 14.6 0.0 0.036 13.6 0.0 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_16 PF13191.6 CQR56403.1 - 0.026 14.9 0.1 0.054 13.9 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain CinA PF02464.17 CQR56404.1 - 4.7e-46 156.2 0.0 7.6e-46 155.5 0.0 1.3 1 0 0 1 1 1 1 Competence-damaged protein MoCF_biosynth PF00994.24 CQR56404.1 - 2.3e-33 114.9 0.0 8.3e-33 113.1 0.0 1.9 2 1 1 3 3 3 1 Probable molybdopterin binding domain CinA_KH PF18146.1 CQR56404.1 - 2.7e-22 78.7 0.1 5e-22 77.8 0.1 1.5 1 0 0 1 1 1 1 Damage-inducible protein CinA KH domain Acetate_kinase PF00871.17 CQR56404.1 - 0.14 10.8 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family CDP-OH_P_transf PF01066.21 CQR56405.1 - 4.1e-18 65.9 0.4 4.1e-18 65.9 0.4 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF520 PF04461.13 CQR56406.1 - 7.2e-64 214.8 9.6 8.2e-64 214.6 9.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF520) DinI PF06183.13 CQR56406.1 - 0.11 12.9 1.4 0.22 11.9 0.7 1.8 2 0 0 2 2 2 0 DinI-like family TM140 PF14985.6 CQR56407.1 - 0.014 15.0 0.4 0.014 15.0 0.4 1.0 1 0 0 1 1 1 0 TM140 protein family HTH_25 PF13413.6 CQR56408.1 - 1.1e-22 79.6 0.0 1.7e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR56408.1 - 9e-10 38.4 0.0 1.4e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4115 PF13464.6 CQR56408.1 - 2.5e-06 27.6 0.1 5.1e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4115) HTH_31 PF13560.6 CQR56408.1 - 5.8e-05 23.3 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR56408.1 - 6.2e-05 23.0 0.1 0.00013 22.0 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix DUF5393 PF17371.2 CQR56408.1 - 0.035 12.2 0.9 0.048 11.8 0.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5393) DUF4519 PF15012.6 CQR56408.1 - 0.053 13.7 0.1 0.16 12.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) DUF3388 PF11868.8 CQR56409.1 - 1.4e-88 295.3 0.1 1.8e-88 294.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3388) ACT PF01842.25 CQR56409.1 - 0.00051 19.8 0.1 0.0026 17.5 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 CQR56409.1 - 0.03 14.9 0.1 0.067 13.8 0.1 1.6 1 0 0 1 1 1 0 ACT domain DUF3243 PF11588.8 CQR56410.1 - 1.6e-33 114.8 0.1 1.8e-33 114.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3243) adh_short_C2 PF13561.6 CQR56411.1 - 4.7e-59 199.8 1.8 5.6e-59 199.5 1.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR56411.1 - 5.1e-57 192.5 5.3 5.9e-57 192.3 5.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR56411.1 - 3.3e-17 63.0 1.6 4.3e-17 62.6 1.6 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR56411.1 - 0.00023 20.7 0.1 0.00032 20.3 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 CQR56411.1 - 0.00048 19.4 0.2 0.00055 19.2 0.2 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 CQR56411.1 - 0.0011 18.6 1.0 0.047 13.2 0.1 2.5 1 1 1 2 2 2 1 NmrA-like family GDP_Man_Dehyd PF16363.5 CQR56411.1 - 0.0025 17.3 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 CQR56411.1 - 0.0062 15.7 0.7 0.01 15.0 0.1 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain Glyco_transf_4 PF13439.6 CQR56411.1 - 0.01 15.8 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 0 Glycosyltransferase Family 4 PALP PF00291.25 CQR56411.1 - 0.016 14.6 0.5 0.027 13.9 0.5 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Sacchrp_dh_NADP PF03435.18 CQR56411.1 - 0.023 15.0 0.1 0.047 14.0 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 CQR56411.1 - 0.027 13.9 5.7 0.033 13.5 2.9 2.4 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1776 PF08643.10 CQR56411.1 - 0.031 13.6 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 CQR56411.1 - 0.053 13.4 0.6 0.1 12.4 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_transf_5 PF08323.11 CQR56411.1 - 0.062 13.0 0.2 0.12 12.0 0.1 1.5 2 0 0 2 2 2 0 Starch synthase catalytic domain F420_oxidored PF03807.17 CQR56411.1 - 0.067 13.8 1.8 0.22 12.2 0.6 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_4 PF13579.6 CQR56411.1 - 0.074 13.5 0.2 2.6 8.5 0.0 2.5 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain DUF1652 PF07865.11 CQR56411.1 - 0.099 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) Peptidase_M16_C PF05193.21 CQR56412.1 - 1e-19 71.2 0.1 2e-19 70.3 0.1 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 CQR56412.1 - 7.5e-19 68.2 0.0 1.3e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LMSTEN PF07988.12 CQR56412.1 - 0.28 10.7 3.2 0.83 9.2 0.0 3.0 3 0 0 3 3 3 0 LMSTEN motif Peptidase_M16_C PF05193.21 CQR56413.1 - 6e-28 98.1 0.0 5.6e-27 94.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 CQR56413.1 - 0.063 13.3 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) Hydrolase_2 PF07486.12 CQR56414.1 - 3.5e-30 104.9 0.0 6.6e-30 104.0 0.0 1.5 1 0 0 1 1 1 1 Cell Wall Hydrolase PG_binding_1 PF01471.18 CQR56414.1 - 1.4e-18 66.8 0.1 5.8e-18 64.8 0.1 2.0 2 0 0 2 2 2 1 Putative peptidoglycan binding domain PG_binding_2 PF08823.11 CQR56414.1 - 0.00037 20.7 0.2 0.0016 18.7 0.0 1.9 2 0 0 2 2 2 1 Putative peptidoglycan binding domain WW PF00397.26 CQR56414.1 - 0.00068 19.7 1.4 0.00096 19.2 0.1 2.0 2 0 0 2 2 2 1 WW domain PG_binding_3 PF09374.10 CQR56414.1 - 0.015 15.6 0.2 1.8 8.9 0.1 2.5 1 1 1 2 2 2 0 Predicted Peptidoglycan domain FtsK_SpoIIIE PF01580.18 CQR56415.1 - 1.6e-64 217.6 1.6 7.3e-46 156.5 0.0 2.4 1 1 1 2 2 2 2 FtsK/SpoIIIE family FtsK_alpha PF17854.1 CQR56415.1 - 1.2e-33 115.3 0.0 2.3e-33 114.3 0.0 1.5 1 0 0 1 1 1 1 FtsK alpha domain FtsK_gamma PF09397.10 CQR56415.1 - 3.8e-29 100.3 0.3 9.7e-29 99.0 0.3 1.8 1 0 0 1 1 1 1 Ftsk gamma domain FtsK_4TM PF13491.6 CQR56415.1 - 7.3e-09 35.6 10.3 2.1e-05 24.3 3.5 2.3 2 0 0 2 2 2 2 4TM region of DNA translocase FtsK/SpoIIIE AAA_10 PF12846.7 CQR56415.1 - 0.00018 20.6 0.0 0.0012 17.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain T2SSE PF00437.20 CQR56415.1 - 0.0023 17.0 0.4 0.018 14.1 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF87 PF01935.17 CQR56415.1 - 0.0052 16.9 0.1 0.013 15.7 0.1 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 CQR56415.1 - 0.045 12.7 0.0 0.14 11.0 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 CQR56415.1 - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase ResIII PF04851.15 CQR56415.1 - 0.064 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ATPase_2 PF01637.18 CQR56415.1 - 0.073 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 CQR56415.1 - 0.087 13.2 0.3 0.38 11.1 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR56415.1 - 0.097 13.1 0.0 0.39 11.1 0.0 2.0 2 0 0 2 2 1 0 AAA ATPase domain DUF2075 PF09848.9 CQR56415.1 - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 CQR56415.1 - 0.15 11.8 0.1 0.37 10.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 CQR56415.1 - 0.2 11.2 0.1 0.38 10.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region YlzJ PF14035.6 CQR56416.1 - 9.4e-22 77.0 0.0 1e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 YlzJ-like protein CLP_protease PF00574.23 CQR56417.1 - 1.9e-33 115.9 0.6 3.9e-33 114.8 0.4 1.5 2 0 0 2 2 2 1 Clp protease CLP1_P PF16575.5 CQR56417.1 - 0.047 13.5 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNase_J_C PF17770.1 CQR56418.1 - 2.3e-28 99.0 0.0 4.5e-28 98.1 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease J C-terminal domain Lactamase_B PF00753.27 CQR56418.1 - 6.7e-19 68.7 0.2 1.7e-18 67.4 0.2 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR56418.1 - 1.2e-14 54.3 0.1 6.2e-13 48.7 0.0 3.0 2 1 2 4 4 4 1 Beta-lactamase superfamily domain RMMBL PF07521.12 CQR56418.1 - 3.7e-12 46.0 0.1 1.1e-09 38.0 0.0 2.7 2 0 0 2 2 2 2 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 CQR56418.1 - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain DHDPS PF00701.22 CQR56419.1 - 2.7e-95 318.4 0.0 3e-95 318.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family TatD_DNase PF01026.21 CQR56419.1 - 0.17 11.2 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase Amidohydro_2 PF04909.14 CQR56419.1 - 0.19 11.5 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase AA_kinase PF00696.28 CQR56420.1 - 1.9e-46 158.6 0.2 3.1e-46 157.9 0.2 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 CQR56420.1 - 5.3e-23 80.6 0.8 9.7e-19 66.9 0.2 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 CQR56420.1 - 1.2e-05 25.0 0.2 0.12 12.2 0.0 4.0 4 0 0 4 4 4 2 ACT domain Flavoprotein PF02441.19 CQR56421.1 - 2.2e-13 50.2 0.1 2.8e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein Gp_dh_C PF02800.20 CQR56421.1 - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DpaA_N PF16924.5 CQR56422.1 - 1.8e-29 102.2 0.0 5.2e-29 100.7 0.0 1.8 3 0 0 3 3 3 1 Dipicolinate synthase subunit A N-terminal domain 2-Hacid_dh_C PF02826.19 CQR56422.1 - 9.6e-07 28.3 0.0 1e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 CQR56422.1 - 1.8e-06 27.6 0.1 4.3e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 CQR56422.1 - 2e-05 24.0 0.1 4.5e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.19 CQR56422.1 - 0.0064 15.3 0.0 0.048 12.4 0.0 1.9 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase F420_oxidored PF03807.17 CQR56422.1 - 0.0068 17.0 0.0 0.025 15.2 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CQR56422.1 - 0.0088 16.2 0.1 0.02 15.1 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 CQR56422.1 - 0.026 14.6 0.0 0.046 13.8 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh PF00389.30 CQR56422.1 - 0.03 14.0 0.0 0.088 12.5 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TrkA_N PF02254.18 CQR56422.1 - 0.12 12.7 0.1 0.38 11.0 0.0 1.9 1 1 0 1 1 1 0 TrkA-N domain dUTPase PF00692.19 CQR56423.1 - 1.3e-34 118.6 0.0 1.5e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 dUTPase Peptidase_M16 PF00675.20 CQR56424.1 - 4.1e-46 156.6 0.0 1.1e-45 155.3 0.0 1.7 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 CQR56424.1 - 1.4e-36 126.2 0.0 2.5e-36 125.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain Polysacc_deac_1 PF01522.21 CQR56425.1 - 2.5e-26 92.0 0.0 4e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 CQR56425.1 - 0.0016 17.7 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 PG_binding_4 PF12229.8 CQR56425.1 - 0.015 15.5 0.1 0.048 13.9 0.1 1.8 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF2334 PF10096.9 CQR56425.1 - 0.093 12.4 0.0 0.17 11.5 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) RNase_PH PF01138.21 CQR56426.1 - 9e-42 142.7 0.0 4.7e-20 72.4 0.0 2.5 2 0 0 2 2 2 2 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 CQR56426.1 - 2.1e-23 82.1 3.3 1.1e-13 50.9 0.2 2.7 2 0 0 2 2 2 2 3' exoribonuclease family, domain 2 S1 PF00575.23 CQR56426.1 - 7.3e-19 67.9 4.1 2e-18 66.5 4.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain PNPase PF03726.14 CQR56426.1 - 6.7e-15 55.4 4.9 1.8e-14 54.0 4.9 1.8 1 0 0 1 1 1 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain KH_1 PF00013.29 CQR56426.1 - 1.1e-09 38.0 10.6 4.1e-07 29.7 8.5 2.9 2 0 0 2 2 2 2 KH domain SPATA25 PF15218.6 CQR56426.1 - 0.013 15.3 0.2 0.023 14.5 0.2 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 25 Ribosomal_S15 PF00312.22 CQR56427.1 - 5.8e-38 129.0 4.0 6.6e-38 128.8 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 Stirrup PF09061.6 CQR56427.1 - 0.12 12.5 0.3 0.15 12.3 0.3 1.2 1 0 0 1 1 1 0 Stirrup FAD_syn PF06574.12 CQR56428.1 - 9.3e-45 152.4 0.0 1.2e-44 151.9 0.0 1.2 1 0 0 1 1 1 1 FAD synthetase Flavokinase PF01687.17 CQR56428.1 - 1.6e-40 137.9 0.0 2.8e-40 137.1 0.0 1.4 1 0 0 1 1 1 1 Riboflavin kinase CTP_transf_like PF01467.26 CQR56428.1 - 0.17 12.1 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase-like Pantoate_ligase PF02569.15 CQR56428.1 - 0.18 11.0 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase TruB_N PF01509.18 CQR56429.1 - 1.4e-58 197.5 0.0 2e-58 197.0 0.0 1.2 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 CQR56429.1 - 4.1e-13 49.3 0.1 7.8e-13 48.4 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB-C_2 PF09157.11 CQR56429.1 - 2.8e-06 27.3 0.2 1.1e-05 25.4 0.1 2.0 2 0 0 2 2 2 1 Pseudouridine synthase II TruB, C-terminal DHH PF01368.20 CQR56430.1 - 2.5e-12 46.9 0.0 4.6e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 CQR56430.1 - 7.6e-11 42.6 0.2 1.7e-10 41.4 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain RBFA PF02033.18 CQR56431.1 - 4.9e-34 116.9 0.0 5.5e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 Ribosome-binding factor A IF-2 PF11987.8 CQR56432.1 - 2.2e-38 130.6 4.6 6.7e-38 129.0 4.6 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 CQR56432.1 - 1.2e-35 122.8 5.0 9.2e-34 116.7 3.2 3.1 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 CQR56432.1 - 8.4e-22 76.7 3.9 1.6e-10 40.6 0.6 2.5 2 0 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 CQR56432.1 - 2.7e-10 40.3 0.3 7.4e-10 38.9 0.3 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 CQR56432.1 - 6.2e-06 25.9 0.0 1.8e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Ras family GTP_EFTU_D2 PF03144.25 CQR56432.1 - 6.8e-05 23.2 5.5 0.00054 20.3 0.6 3.7 3 0 0 3 3 3 1 Elongation factor Tu domain 2 FeoB_N PF02421.18 CQR56432.1 - 0.00016 21.3 0.1 0.00035 20.1 0.1 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 CQR56432.1 - 0.00019 20.9 0.0 0.00058 19.4 0.0 1.8 1 0 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 CQR56432.1 - 0.00098 19.1 1.2 0.43 10.5 0.0 2.7 2 1 1 3 3 3 2 RsgA GTPase SRPRB PF09439.10 CQR56432.1 - 0.0013 18.2 0.1 0.0052 16.2 0.1 2.0 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 CQR56432.1 - 0.0025 18.0 0.1 0.0059 16.8 0.1 1.7 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 CQR56432.1 - 0.0027 17.5 0.1 0.011 15.5 0.1 2.0 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 CQR56432.1 - 0.016 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 CQR56432.1 - 0.023 15.2 1.4 0.052 14.0 0.0 2.3 3 0 0 3 3 2 0 AAA domain MMR_HSR1_Xtn PF16897.5 CQR56432.1 - 0.026 14.5 0.8 0.14 12.2 0.0 2.5 3 0 0 3 3 2 0 C-terminal region of MMR_HSR1 domain AAA_29 PF13555.6 CQR56432.1 - 0.076 12.8 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ANT PF03374.14 CQR56432.1 - 0.12 12.7 0.1 6.6 7.1 0.0 2.6 2 0 0 2 2 2 0 Phage antirepressor protein KilAC domain Ribosomal_L7Ae PF01248.26 CQR56433.1 - 4.8e-17 61.5 0.0 5.3e-17 61.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF448 PF04296.13 CQR56434.1 - 2.5e-30 104.1 0.7 3e-30 103.9 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF448) NusA_N PF08529.11 CQR56435.1 - 2.3e-43 147.4 3.7 2.3e-43 147.4 3.7 1.6 2 0 0 2 2 2 1 NusA N-terminal domain KH_5 PF13184.6 CQR56435.1 - 4.5e-28 97.1 0.1 8.5e-27 93.1 0.1 2.4 2 0 0 2 2 2 1 NusA-like KH domain S1 PF00575.23 CQR56435.1 - 3.9e-10 39.9 0.1 1.1e-09 38.4 0.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain CABIT PF12736.7 CQR56435.1 - 0.034 13.4 0.0 0.063 12.6 0.0 1.4 1 0 0 1 1 1 0 Cell-cycle sustaining, positive selection, ATP-grasp PF02222.22 CQR56435.1 - 0.073 12.6 0.2 0.17 11.5 0.2 1.6 1 0 0 1 1 1 0 ATP-grasp domain DUF150 PF02576.17 CQR56436.1 - 2e-28 98.6 0.0 2.9e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 RimP N-terminal domain DUF150_C PF17384.2 CQR56436.1 - 1.3e-13 50.8 0.1 2.1e-13 50.2 0.1 1.4 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DNA_pol3_alpha PF07733.12 CQR56437.1 - 1.6e-58 198.3 0.0 2e-42 145.6 0.0 2.5 1 1 1 2 2 2 2 Bacterial DNA polymerase III alpha NTPase domain PHP PF02811.19 CQR56437.1 - 1.4e-44 152.3 0.1 3.5e-44 151.0 0.1 1.7 1 0 0 1 1 1 1 PHP domain RNase_T PF00929.24 CQR56437.1 - 3.5e-33 115.5 0.1 9.9e-33 114.0 0.0 1.8 2 0 0 2 2 2 1 Exonuclease DNA_pol3_finger PF17657.1 CQR56437.1 - 1e-23 83.5 0.0 2e-23 82.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain DNA_pol3_a_NI PF14480.6 CQR56437.1 - 6.6e-15 54.9 0.8 1.7e-14 53.6 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase III polC-type N-terminus I DNA_pol3_a_NII PF11490.8 CQR56437.1 - 1.8e-11 43.9 0.2 4.3e-11 42.7 0.2 1.7 1 0 0 1 1 1 1 DNA polymerase III polC-type N-terminus II HHH_6 PF14579.6 CQR56437.1 - 2.7e-09 37.2 0.0 6.4e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.25 CQR56437.1 - 2.3e-05 24.3 0.0 0.0001 22.2 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DNA_pol_A_exo1 PF01612.20 CQR56437.1 - 8.2e-05 22.4 0.0 0.00031 20.5 0.0 1.9 1 1 0 1 1 1 1 3'-5' exonuclease RNase_H_2 PF13482.6 CQR56437.1 - 0.0015 18.5 0.0 0.0087 16.1 0.0 2.3 1 1 0 1 1 1 1 RNase_H superfamily DIOX_N PF14226.6 CQR56437.1 - 0.089 13.6 0.2 0.21 12.3 0.2 1.6 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal ProRS-C_1 PF09180.11 CQR56438.1 - 4.5e-24 84.4 2.1 1e-23 83.3 2.1 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.25 CQR56438.1 - 1.8e-16 60.6 0.3 3.9e-16 59.5 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 CQR56438.1 - 2.1e-15 56.6 0.0 4e-15 55.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain DUF832 PF05734.11 CQR56438.1 - 0.014 14.9 0.0 0.039 13.4 0.0 1.6 2 0 0 2 2 2 0 Herpesvirus protein of unknown function (DUF832) SWI2_SNF2 PF18766.1 CQR56438.1 - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 SWI2/SNF2 ATPase Peptidase_M50 PF02163.22 CQR56439.1 - 4.4e-70 235.8 0.0 6.6e-70 235.2 0.0 1.2 1 1 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 CQR56439.1 - 2e-10 40.4 0.0 4.9e-10 39.1 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 CQR56439.1 - 3e-10 40.3 0.0 1.3e-09 38.3 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 CQR56439.1 - 5.5e-06 26.7 0.2 1.2e-05 25.5 0.2 1.5 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 CQR56439.1 - 0.081 12.9 0.2 0.29 11.1 0.1 1.9 2 0 0 2 2 2 0 Tricorn protease PDZ domain DUF456 PF04306.13 CQR56439.1 - 0.095 13.0 0.3 0.095 13.0 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF456) DXP_reductoisom PF02670.16 CQR56440.1 - 1.6e-43 148.5 0.5 2.7e-43 147.7 0.5 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXP_redisom_C PF08436.12 CQR56440.1 - 8.3e-42 141.3 0.0 1.8e-41 140.2 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DXPR_C PF13288.6 CQR56440.1 - 2.1e-41 140.8 0.1 3.4e-41 140.1 0.1 1.4 1 0 0 1 1 1 1 DXP reductoisomerase C-terminal domain Semialdhyde_dh PF01118.24 CQR56440.1 - 0.037 14.5 0.0 0.19 12.2 0.0 2.2 2 1 1 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain CTP_transf_1 PF01148.20 CQR56441.1 - 1.3e-62 212.0 19.2 1.5e-62 211.8 19.2 1.0 1 0 0 1 1 1 1 Cytidylyltransferase family Prenyltransf PF01255.19 CQR56442.1 - 2.6e-81 272.4 0.0 3e-81 272.2 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Entericidin PF08085.11 CQR56442.1 - 0.2 11.7 0.1 0.39 10.8 0.1 1.5 1 0 0 1 1 1 0 Entericidin EcnA/B family RRF PF01765.19 CQR56443.1 - 5.5e-66 221.5 1.0 7.4e-66 221.1 1.0 1.2 1 0 0 1 1 1 1 Ribosome recycling factor VPS28 PF03997.12 CQR56443.1 - 0.0057 16.4 0.1 0.0092 15.7 0.1 1.3 1 0 0 1 1 1 1 VPS28 protein PKK PF12474.8 CQR56443.1 - 0.014 15.5 1.3 0.014 15.5 1.3 1.6 2 0 0 2 2 2 0 Polo kinase kinase AA_kinase PF00696.28 CQR56444.1 - 1.3e-26 93.6 1.4 1.6e-26 93.4 1.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family EF_TS PF00889.19 CQR56445.1 - 4.2e-49 167.0 4.6 9.2e-49 165.9 4.6 1.9 1 1 0 1 1 1 1 Elongation factor TS HTH_8 PF02954.19 CQR56445.1 - 0.0059 16.4 0.2 0.019 14.8 0.2 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family SRI PF08236.11 CQR56445.1 - 0.019 15.1 0.8 6.7 7.0 0.2 2.5 1 1 1 2 2 2 0 SRI (Set2 Rpb1 interacting) domain HOIP-UBA PF16678.5 CQR56445.1 - 0.066 13.2 1.7 0.75 9.8 0.2 2.3 2 0 0 2 2 2 0 HOIP UBA domain pair Ribosomal_L12 PF00542.19 CQR56445.1 - 0.12 12.8 0.2 0.12 12.8 0.2 2.7 3 0 0 3 3 3 0 Ribosomal protein L7/L12 C-terminal domain Ribosomal_S2 PF00318.20 CQR56446.1 - 4.2e-100 333.4 0.0 4.7e-100 333.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S2 YceG PF02618.16 CQR56447.1 - 4.3e-06 26.5 0.0 5.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 YceG-like family FAP PF07174.11 CQR56447.1 - 0.0034 16.9 22.7 0.0042 16.6 22.7 1.2 1 0 0 1 1 1 1 Fibronectin-attachment protein (FAP) DUF2802 PF10975.8 CQR56448.1 - 5.8e-06 26.3 3.3 8.9e-05 22.5 3.3 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2802) DUF720 PF05302.11 CQR56448.1 - 0.00026 20.8 0.4 0.00042 20.2 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF720) GCR PF02155.15 CQR56448.1 - 0.011 14.8 0.7 0.014 14.5 0.7 1.1 1 0 0 1 1 1 0 Glucocorticoid receptor HTH_7 PF02796.15 CQR56448.1 - 0.027 14.5 0.0 0.079 13.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Spc7 PF08317.11 CQR56448.1 - 0.053 12.4 4.1 0.06 12.2 4.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein HTH_40 PF14493.6 CQR56448.1 - 0.13 12.7 1.0 0.28 11.7 0.1 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain TSC22 PF01166.18 CQR56448.1 - 0.45 10.9 4.4 1.4 9.3 0.4 2.3 1 1 1 2 2 2 0 TSC-22/dip/bun family DivIC PF04977.15 CQR56448.1 - 6 6.7 8.4 2.8 7.8 3.7 2.5 1 1 1 2 2 2 0 Septum formation initiator FapA PF03961.13 CQR56450.1 - 2.1e-119 399.1 13.1 2.3e-119 399.0 13.1 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A MinC_C PF03775.16 CQR56450.1 - 2.3 8.3 16.8 0.17 11.9 6.1 3.3 1 1 1 3 3 3 0 Septum formation inhibitor MinC, C-terminal domain Sigma70_r4 PF04545.16 CQR56451.1 - 9.1e-15 53.9 0.3 2e-14 52.8 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR56451.1 - 7.1e-12 44.9 0.0 1.4e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r3 PF04539.16 CQR56451.1 - 5.6e-09 36.0 3.5 2.3e-07 30.8 2.0 2.3 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 CQR56451.1 - 8.4e-09 35.0 0.8 8.2e-08 31.8 0.5 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0122 PF04297.14 CQR56451.1 - 1.3e-05 25.3 0.6 0.00012 22.2 0.1 2.4 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_37 PF13744.6 CQR56451.1 - 0.00019 21.3 0.3 0.32 11.0 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_38 PF13936.6 CQR56451.1 - 0.00026 20.7 0.0 0.00053 19.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR56451.1 - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_16 PF12645.7 CQR56451.1 - 0.038 14.0 0.4 2.3 8.4 0.0 3.1 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_23 PF13384.6 CQR56451.1 - 0.043 13.6 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 CQR56451.1 - 0.061 13.1 0.0 9.4 6.1 0.0 2.9 3 0 0 3 3 3 0 HTH DNA binding domain HTH_40 PF14493.6 CQR56451.1 - 0.092 13.2 0.1 27 5.3 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HemY_N PF07219.13 CQR56452.1 - 0.0033 17.6 0.3 0.0058 16.8 0.3 1.4 1 0 0 1 1 1 1 HemY protein N-terminus DUF485 PF04341.12 CQR56452.1 - 0.19 11.7 6.2 0.29 11.1 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 CheD PF03975.13 CQR56453.1 - 2.5e-33 114.4 0.0 3.3e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 CQR56454.1 - 6.3e-28 96.4 0.6 9.8e-14 51.0 0.0 2.3 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 CQR56454.1 - 8.5e-10 38.7 0.0 0.00042 20.4 0.0 2.5 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX CheW PF01584.19 CQR56455.1 - 2e-37 127.9 1.4 2.3e-37 127.7 1.4 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 CQR56456.1 - 4.8e-26 91.0 0.4 1e-25 90.0 0.4 1.6 1 0 0 1 1 1 1 CheW-like domain P2 PF07194.11 CQR56456.1 - 8.9e-25 86.6 2.1 2.3e-24 85.2 0.8 2.4 2 0 0 2 2 2 1 P2 response regulator binding domain Hpt PF01627.23 CQR56456.1 - 7.8e-19 67.7 0.8 2.4e-18 66.2 0.2 2.2 2 0 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 CQR56456.1 - 3.5e-17 62.9 0.8 8.1e-17 61.7 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 CQR56456.1 - 6.1e-16 58.6 4.1 2.5e-15 56.6 4.1 2.2 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 CQR56456.1 - 0.022 14.6 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K-box PF01486.17 CQR56456.1 - 0.045 13.9 0.1 0.16 12.2 0.1 2.0 1 1 0 1 1 1 0 K-box region Ribosomal_60s PF00428.19 CQR56456.1 - 2.6 8.7 15.3 1.5 9.5 0.5 3.0 3 0 0 3 3 3 0 60s Acidic ribosomal protein CheB_methylest PF01339.17 CQR56457.1 - 6.3e-59 198.5 0.0 2e-58 196.9 0.0 1.8 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 CQR56457.1 - 2.6e-25 88.8 0.4 5e-25 87.8 0.4 1.5 1 0 0 1 1 1 1 Response regulator receiver domain ThiG PF05690.14 CQR56457.1 - 0.02 14.2 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Ndc1_Nup PF09531.10 CQR56457.1 - 2.1 7.0 4.4 2.5 6.7 4.4 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup ParA PF10609.9 CQR56458.1 - 1.1e-20 74.1 0.6 3.1e-13 49.8 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 CQR56458.1 - 4.1e-19 69.2 0.0 6.1e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 CQR56458.1 - 1.6e-16 60.6 0.0 2.1e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 CQR56458.1 - 1.9e-08 34.1 0.0 1.1e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 CQR56458.1 - 1.6e-07 31.0 0.5 9.5e-07 28.5 0.5 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 CQR56458.1 - 6.1e-05 22.4 0.8 0.00083 18.7 0.8 2.2 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.11 CQR56458.1 - 0.00015 21.1 2.2 0.001 18.5 0.3 2.1 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 CQR56458.1 - 0.00018 20.8 1.4 0.00069 18.9 0.1 2.3 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_24 PF13479.6 CQR56458.1 - 0.0021 17.8 0.1 0.0031 17.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 CQR56458.1 - 0.023 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 CQR56459.1 - 4.4e-39 134.1 0.3 1.1e-38 132.8 0.0 1.8 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain ATPase PF06745.13 CQR56459.1 - 0.00022 20.6 0.4 0.00065 19.1 0.0 2.0 2 1 0 2 2 2 1 KaiC NTPase_1 PF03266.15 CQR56459.1 - 0.00072 19.5 1.4 0.02 14.8 0.1 2.9 3 0 0 3 3 2 1 NTPase AAA PF00004.29 CQR56459.1 - 0.00099 19.5 0.3 0.0034 17.8 0.1 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR56459.1 - 0.0011 19.4 0.0 0.0011 19.4 0.0 2.6 2 1 0 2 2 1 1 AAA ATPase domain AAA_14 PF13173.6 CQR56459.1 - 0.0025 17.8 1.0 0.011 15.7 0.1 2.5 2 2 1 3 3 3 1 AAA domain MMR_HSR1 PF01926.23 CQR56459.1 - 0.0035 17.4 0.0 0.0098 16.0 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 CQR56459.1 - 0.0037 17.5 0.1 0.0037 17.5 0.1 2.7 2 2 1 3 3 3 1 AAA domain ResIII PF04851.15 CQR56459.1 - 0.0043 17.1 0.4 0.018 15.0 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit TsaE PF02367.17 CQR56459.1 - 0.0049 16.9 0.6 0.099 12.6 0.1 2.7 2 1 1 3 3 3 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 CQR56459.1 - 0.005 16.4 0.6 0.043 13.4 0.1 2.6 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 CQR56459.1 - 0.0056 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 CQR56459.1 - 0.0063 16.3 0.3 0.025 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain MscS_porin PF12795.7 CQR56459.1 - 0.0068 16.0 3.8 0.016 14.8 3.8 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain NACHT PF05729.12 CQR56459.1 - 0.0068 16.3 0.8 1.2 9.0 0.1 2.5 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 CQR56459.1 - 0.0068 16.3 0.4 0.23 11.3 0.0 2.4 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 CQR56459.1 - 0.0072 16.1 0.4 0.12 12.1 0.4 2.3 1 1 0 1 1 1 1 IstB-like ATP binding protein ParA PF10609.9 CQR56459.1 - 0.0087 15.5 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MeaB PF03308.16 CQR56459.1 - 0.01 14.8 0.9 0.022 13.7 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 CQR56459.1 - 0.011 16.3 0.2 0.072 13.6 0.0 2.4 2 1 0 2 2 2 0 ABC transporter APS_kinase PF01583.20 CQR56459.1 - 0.011 15.6 0.2 0.028 14.3 0.0 1.8 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 CQR56459.1 - 0.014 15.5 0.5 0.048 13.8 0.0 2.2 3 0 0 3 3 2 0 AAA domain DEAD PF00270.29 CQR56459.1 - 0.016 14.9 1.4 0.69 9.7 0.3 2.6 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_28 PF13521.6 CQR56459.1 - 0.018 15.3 0.0 0.061 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR56459.1 - 0.022 14.7 0.0 0.058 13.3 0.0 1.7 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 CQR56459.1 - 0.023 15.3 0.1 0.092 13.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 CQR56459.1 - 0.029 13.6 0.5 0.091 11.9 0.1 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_31 PF13614.6 CQR56459.1 - 0.037 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR56459.1 - 0.042 13.8 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 CQR56459.1 - 0.042 13.4 0.2 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 CQR56459.1 - 0.043 13.7 0.5 0.32 10.9 0.1 2.7 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DS PF01916.17 CQR56459.1 - 0.045 13.0 0.0 0.075 12.3 0.0 1.4 1 0 0 1 1 1 0 Deoxyhypusine synthase AAA_19 PF13245.6 CQR56459.1 - 0.075 13.4 0.2 0.075 13.4 0.2 2.4 2 2 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 CQR56459.1 - 0.078 12.2 0.2 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.22 CQR56459.1 - 0.15 12.4 0.0 0.44 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 CQR56459.1 - 0.19 11.3 0.0 0.51 9.8 0.0 1.7 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 CQR56459.1 - 0.21 11.3 3.2 0.51 10.0 0.1 2.9 3 1 1 4 4 3 0 AAA domain AAA_17 PF13207.6 CQR56459.1 - 0.32 11.4 1.5 2.4 8.6 0.0 2.7 2 2 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR56459.1 - 0.65 10.5 2.6 1.4 9.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain MSP1_C PF07462.11 CQR56459.1 - 2.4 6.8 4.1 3.5 6.2 4.1 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus FHIPEP PF00771.20 CQR56460.1 - 2.9e-276 918.2 9.4 3.3e-276 918.0 9.4 1.0 1 0 0 1 1 1 1 FHIPEP family Bac_export_2 PF01312.19 CQR56461.1 - 8e-132 439.4 9.9 9.1e-132 439.2 9.9 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family POR PF01558.18 CQR56461.1 - 0.015 15.3 1.1 0.037 14.1 0.1 1.9 2 0 0 2 2 2 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Bac_export_1 PF01311.20 CQR56462.1 - 8.2e-75 251.3 30.3 9.4e-75 251.1 30.3 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Bac_export_3 PF01313.19 CQR56463.1 - 1.7e-30 104.8 10.2 1.9e-30 104.6 10.2 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 3 MNHE PF01899.16 CQR56463.1 - 0.0083 15.9 3.0 0.0096 15.7 3.0 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit TLV_coat PF00429.19 CQR56463.1 - 0.028 13.1 0.4 0.032 12.9 0.4 1.1 1 0 0 1 1 1 0 ENV polyprotein (coat polyprotein) TM_helix PF05552.12 CQR56463.1 - 0.04 13.9 2.5 0.04 13.9 2.5 2.3 2 1 0 2 2 2 0 Conserved TM helix ParcG PF10274.9 CQR56463.1 - 0.049 13.8 0.2 0.054 13.6 0.2 1.0 1 0 0 1 1 1 0 Parkin co-regulated protein DUF5357 PF17310.2 CQR56463.1 - 0.13 10.8 2.0 0.14 10.7 2.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5357) Phlebovirus_G1 PF07243.11 CQR56463.1 - 0.27 9.6 0.6 0.27 9.6 0.6 1.0 1 0 0 1 1 1 0 Phlebovirus glycoprotein G1 Bac_export_2 PF01312.19 CQR56463.1 - 0.7 9.1 4.4 2.6 7.2 1.1 2.0 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family FliP PF00813.20 CQR56464.1 - 2.4e-78 262.4 20.0 3.1e-78 262.0 20.0 1.1 1 0 0 1 1 1 1 FliP family FliO PF04347.13 CQR56465.1 - 1.3e-10 41.4 0.0 1.8e-10 41.0 0.0 1.3 1 1 0 1 1 1 1 Flagellar biosynthesis protein, FliO DUF1700 PF08006.11 CQR56465.1 - 1.1 8.8 4.8 0.16 11.5 1.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Response_reg PF00072.24 CQR56466.1 - 1.2e-34 118.9 3.6 1.3e-34 118.7 3.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 CQR56466.1 - 0.015 15.3 0.1 0.027 14.5 0.1 1.4 1 1 0 1 1 1 0 B12 binding domain Peripla_BP_6 PF13458.6 CQR56466.1 - 0.02 14.5 0.1 0.024 14.3 0.1 1.1 1 0 0 1 1 1 0 Periplasmic binding protein HydF_dimer PF18128.1 CQR56466.1 - 0.029 14.4 0.1 0.16 12.1 0.0 1.9 1 1 0 2 2 2 0 Hydrogen maturase F dimerization domain SBDS_C PF09377.10 CQR56466.1 - 0.14 12.1 0.5 0.23 11.5 0.5 1.4 1 1 0 1 1 1 0 SBDS protein C-terminal domain CheC PF04509.12 CQR56467.1 - 6.7e-30 102.7 4.2 3e-16 59.0 0.1 2.5 2 0 0 2 2 2 2 CheC-like family FliMN_C PF01052.20 CQR56467.1 - 1e-25 89.5 2.3 1.8e-25 88.7 2.3 1.4 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term CheX PF13690.6 CQR56467.1 - 1.2e-08 35.0 3.9 0.0011 19.1 0.0 3.3 4 0 0 4 4 4 2 Chemotaxis phosphatase CheX FliM PF02154.15 CQR56467.1 - 4.2e-05 23.5 0.3 7.3e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 Flagellar motor switch protein FliM Pex14_N PF04695.13 CQR56467.1 - 0.62 10.7 8.8 15 6.2 7.1 2.4 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region FliM PF02154.15 CQR56468.1 - 4.9e-72 241.9 1.2 6.7e-72 241.4 1.2 1.2 1 0 0 1 1 1 1 Flagellar motor switch protein FliM FliMN_C PF01052.20 CQR56468.1 - 2.6e-21 75.4 0.2 4.5e-21 74.6 0.2 1.4 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term FliL PF03748.14 CQR56469.1 - 2e-10 41.2 0.4 3e-10 40.6 0.3 1.4 1 1 0 1 1 1 1 Flagellar basal body-associated protein FliL TIM21 PF08294.11 CQR56469.1 - 0.094 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 TIM21 FlbD PF06289.11 CQR56470.1 - 6.9e-26 89.6 0.5 8.7e-26 89.3 0.5 1.1 1 0 0 1 1 1 1 Flagellar and Swarming motility proteins Flg_bbr_C PF06429.13 CQR56471.1 - 2.1e-22 79.0 1.8 6.6e-22 77.4 1.8 1.9 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 CQR56471.1 - 5.9e-11 42.1 0.1 5.9e-11 42.1 0.1 2.5 3 0 0 3 3 3 1 Flagella basal body rod protein Flagellar_put PF12611.8 CQR56472.1 - 3.5e-14 52.2 4.5 3.5e-14 52.2 4.5 2.0 2 0 0 2 2 2 1 Putative flagellar DUF4258 PF14076.6 CQR56472.1 - 0.0066 16.8 0.0 0.034 14.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) FlgD PF03963.14 CQR56473.1 - 2.5e-22 79.0 6.9 2.5e-22 79.0 6.9 1.7 2 0 0 2 2 2 1 Flagellar hook capping protein - N-terminal region DUF386 PF04074.12 CQR56473.1 - 0.094 12.6 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 YhcH/YjgK/YiaL FKBP_N PF01346.18 CQR56473.1 - 0.68 10.9 4.9 6 7.9 0.1 2.1 1 1 1 2 2 2 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Flg_hook PF02120.16 CQR56474.1 - 1.5e-20 72.8 2.6 1.5e-20 72.8 2.6 2.0 2 0 0 2 2 2 1 Flagellar hook-length control protein FliK HpaP PF09483.10 CQR56474.1 - 0.0016 18.7 0.0 0.0034 17.6 0.0 1.6 1 0 0 1 1 1 1 Type III secretion protein (HpaP) Serglycin PF04360.12 CQR56474.1 - 0.037 14.0 0.5 0.066 13.2 0.0 1.6 2 0 0 2 2 2 0 Serglycin MgtE_N PF03448.17 CQR56475.1 - 2.6e-11 44.0 7.0 5.4e-06 26.9 0.3 3.6 3 2 1 4 4 4 3 MgtE intracellular N domain DUF724 PF05266.14 CQR56475.1 - 0.0067 16.3 4.0 0.0067 16.3 4.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF724) Ribosomal_L22 PF00237.19 CQR56475.1 - 0.011 16.0 0.9 0.011 16.0 0.9 2.7 2 1 1 3 3 3 0 Ribosomal protein L22p/L17e Tropomyosin_1 PF12718.7 CQR56475.1 - 0.014 15.6 7.7 0.014 15.6 7.7 2.2 2 0 0 2 2 2 0 Tropomyosin like SlyX PF04102.12 CQR56475.1 - 0.014 16.0 5.0 0.014 16.0 5.0 2.3 2 1 0 2 2 2 0 SlyX NPV_P10 PF05531.12 CQR56475.1 - 0.076 13.5 7.1 0.33 11.4 0.7 3.6 1 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Aminopep PF10023.9 CQR56475.1 - 0.11 11.9 4.0 0.17 11.2 4.0 1.3 1 0 0 1 1 1 0 Putative aminopeptidase CTNNB1_binding PF08347.11 CQR56475.1 - 0.33 11.1 7.2 1 9.5 7.2 1.8 1 1 0 1 1 1 0 N-terminal CTNNB1 binding FliG_M PF14841.6 CQR56475.1 - 0.38 11.0 5.4 2.7 8.3 0.3 3.7 3 1 1 4 4 3 0 FliG middle domain YabA PF06156.13 CQR56475.1 - 0.88 10.2 7.6 0.44 11.2 2.8 2.3 2 0 0 2 2 2 0 Initiation control protein YabA MBR1 PF17058.5 CQR56475.1 - 0.94 9.7 9.1 1.6 9.0 9.1 1.5 1 1 0 1 1 1 0 Mitochondrial biogenesis regulation protein 1 Filament PF00038.21 CQR56475.1 - 1.3 8.5 14.1 0.097 12.2 8.7 1.7 2 0 0 2 2 2 0 Intermediate filament protein Phage_GP20 PF06810.11 CQR56475.1 - 1.6 8.5 22.7 0.033 14.0 13.8 2.5 1 1 0 2 2 2 0 Phage minor structural protein GP20 Hrs_helical PF12210.8 CQR56475.1 - 3.3 8.3 8.3 0.83 10.2 3.1 2.2 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate XhlA PF10779.9 CQR56475.1 - 4.2 7.6 8.9 0.64 10.3 3.8 2.4 2 1 1 3 3 3 0 Haemolysin XhlA Spc7 PF08317.11 CQR56475.1 - 7.5 5.3 19.6 0.48 9.3 13.3 1.9 1 1 0 2 2 2 0 Spc7 kinetochore protein Colicin-DNase PF12639.7 CQR56475.1 - 7.8 7.4 8.1 24 5.8 0.6 2.6 2 0 0 2 2 2 0 DNase/tRNase domain of colicin-like bacteriocin Csm1_N PF18504.1 CQR56475.1 - 7.8 6.9 15.9 3 8.2 4.3 3.4 2 1 1 3 3 3 0 Csm1 N-terminal domain FliJ PF02050.16 CQR56476.1 - 1.8e-15 57.2 11.8 2.2e-15 57.0 11.8 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein YscO-like PF16789.5 CQR56476.1 - 0.0028 17.7 10.5 0.0068 16.4 10.5 1.6 1 1 0 1 1 1 1 YscO-like protein GatB_Yqey PF02637.18 CQR56476.1 - 0.0077 16.1 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 GatB domain ATP-synt_ab PF00006.25 CQR56477.1 - 1e-75 254.1 0.0 1.4e-75 253.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 CQR56477.1 - 1.8e-23 82.2 0.2 2.9e-23 81.5 0.2 1.3 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain ATP-synt_ab_N PF02874.23 CQR56477.1 - 4.1e-09 36.8 0.5 1.9e-08 34.7 0.2 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain ABC_tran PF00005.27 CQR56477.1 - 0.00039 20.9 0.1 0.00086 19.8 0.1 1.5 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 CQR56477.1 - 0.01 15.7 0.3 0.02 14.8 0.3 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 CQR56477.1 - 0.024 14.7 1.9 0.024 14.7 0.3 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain IF-2B PF01008.17 CQR56477.1 - 0.14 11.3 0.2 0.28 10.4 0.0 1.5 2 0 0 2 2 2 0 Initiation factor 2 subunit family FliH PF02108.16 CQR56478.1 - 2.6e-15 56.6 0.6 2.6e-15 56.6 0.6 2.3 1 1 1 2 2 2 1 Flagellar assembly protein FliH NolV PF06635.12 CQR56478.1 - 1.4e-05 24.6 2.1 1.4e-05 24.6 2.1 1.7 1 1 1 2 2 2 1 Nodulation protein NolV Peptidase_C50 PF03568.17 CQR56478.1 - 0.036 13.2 3.8 0.045 12.9 3.8 1.2 1 0 0 1 1 1 0 Peptidase family C50 Peptidase_M41 PF01434.18 CQR56478.1 - 0.041 13.7 10.7 0.5 10.2 1.9 2.3 1 1 1 2 2 2 0 Peptidase family M41 DUF2895 PF11444.8 CQR56478.1 - 0.081 12.3 1.8 0.12 11.7 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2895) FAM25 PF15825.5 CQR56478.1 - 0.1 13.0 0.9 0.26 11.6 0.9 1.7 1 0 0 1 1 1 0 FAM25 family DivIVA PF05103.13 CQR56478.1 - 1 9.5 22.4 1.8e+02 2.2 22.2 2.5 1 1 0 1 1 1 0 DivIVA protein ATP-synt_B PF00430.18 CQR56478.1 - 3 7.9 30.8 3.7 7.6 19.2 2.7 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 CQR56478.1 - 8.1 6.9 33.4 0.43 11.0 18.3 3.3 1 1 2 3 3 3 0 Vacuolar (H+)-ATPase G subunit FliG_N PF14842.6 CQR56479.1 - 1.2e-48 164.0 13.4 4.1e-38 130.1 1.2 3.4 2 1 0 3 3 3 2 FliG N-terminal domain FliG_C PF01706.16 CQR56479.1 - 1.7e-47 160.1 17.7 4.8e-44 149.0 6.3 3.2 3 0 0 3 3 3 3 FliG C-terminal domain FliG_M PF14841.6 CQR56479.1 - 1.9e-33 114.5 15.3 6e-29 100.1 3.6 3.9 4 0 0 4 4 4 2 FliG middle domain MgtE_N PF03448.17 CQR56479.1 - 3.8e-07 30.7 13.4 0.011 16.3 0.7 4.6 2 2 2 4 4 4 3 MgtE intracellular N domain His_biosynth PF00977.21 CQR56479.1 - 0.0004 19.9 1.3 0.00074 19.0 1.3 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein TRAF_BIRC3_bd PF16673.5 CQR56479.1 - 0.013 15.2 0.9 0.013 15.2 0.9 3.1 3 0 0 3 3 3 0 TNF receptor-associated factor BIRC3 binding domain TFA2_Winged_2 PF18121.1 CQR56479.1 - 0.026 14.2 0.2 0.12 12.1 0.0 2.2 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 DUF4581 PF15167.6 CQR56479.1 - 0.14 12.3 0.0 2 8.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4581) YscJ_FliF PF01514.17 CQR56480.1 - 6e-55 185.9 2.8 2.8e-54 183.7 0.3 2.6 3 0 0 3 3 3 1 Secretory protein of YscJ/FliF family YscJ_FliF_C PF08345.11 CQR56480.1 - 4e-18 66.2 3.2 4e-18 66.2 3.2 2.4 2 1 1 3 3 3 1 Flagellar M-ring protein C-terminal CcmH PF03918.14 CQR56480.1 - 0.00055 19.2 0.1 0.013 14.8 0.0 2.3 2 0 0 2 2 2 1 Cytochrome C biogenesis protein TFIID_30kDa PF03540.13 CQR56480.1 - 0.01 15.8 0.1 0.033 14.1 0.1 1.9 2 0 0 2 2 2 0 Transcription initiation factor TFIID 23-30kDa subunit ETRAMP PF09716.10 CQR56480.1 - 0.011 15.8 1.3 0.24 11.5 0.4 2.7 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF148 PF02520.17 CQR56480.1 - 0.023 14.8 1.3 2.4 8.3 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function DUF148 ICL PF00463.21 CQR56480.1 - 0.044 12.3 0.0 0.2 10.1 0.0 1.8 2 0 0 2 2 2 0 Isocitrate lyase family Peroxin-22 PF12827.7 CQR56480.1 - 0.048 13.6 0.1 0.3 11.0 0.1 2.2 2 0 0 2 2 2 0 Peroxisomal biogenesis protein family FtsX PF02687.21 CQR56480.1 - 0.056 13.9 0.2 4.8 7.7 0.0 2.5 2 0 0 2 2 2 0 FtsX-like permease family ELFV_dehydrog_N PF02812.18 CQR56480.1 - 0.094 12.6 0.0 0.7 9.8 0.0 2.2 2 0 0 2 2 2 0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DUF4381 PF14316.6 CQR56480.1 - 0.31 11.3 1.1 1.8 8.8 0.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4381) FliE PF02049.18 CQR56481.1 - 1.8e-27 95.3 5.8 2.2e-27 95.0 5.8 1.1 1 0 0 1 1 1 1 Flagellar hook-basal body complex protein FliE Flg_bbr_C PF06429.13 CQR56482.1 - 1.9e-11 43.9 0.3 3.3e-11 43.1 0.3 1.5 1 1 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 CQR56482.1 - 5.7e-10 38.9 0.7 1.1e-09 38.0 0.7 1.5 1 0 0 1 1 1 1 Flagella basal body rod protein Flg_bb_rod PF00460.20 CQR56483.1 - 1.1e-09 38.0 0.4 1.1e-09 38.0 0.4 2.4 2 0 0 2 2 2 1 Flagella basal body rod protein Med29 PF11568.8 CQR56483.1 - 0.0024 18.1 3.0 0.0049 17.1 3.0 1.4 1 1 0 1 1 1 1 Mediator complex subunit 29 AAA_2 PF07724.14 CQR56484.1 - 6.3e-47 159.9 0.3 5.9e-38 130.7 0.1 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.29 CQR56484.1 - 6.2e-15 55.8 0.0 1.6e-06 28.5 0.0 2.9 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR56484.1 - 1.6e-08 34.6 0.2 7.1e-06 26.1 0.1 2.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.9 CQR56484.1 - 2.5e-06 27.4 0.7 9.1e-06 25.7 0.2 2.2 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein AAA_22 PF13401.6 CQR56484.1 - 1.9e-05 25.0 3.2 0.00057 20.2 1.2 3.5 2 1 0 2 2 2 1 AAA domain MCM PF00493.23 CQR56484.1 - 9.6e-05 21.6 0.1 0.0048 16.0 0.0 2.3 2 0 0 2 2 2 1 MCM P-loop domain Mg_chelatase PF01078.21 CQR56484.1 - 0.0001 21.8 0.1 0.0024 17.3 0.0 3.0 4 0 0 4 4 4 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 CQR56484.1 - 0.00022 21.0 0.2 0.011 15.5 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 CQR56484.1 - 0.00029 21.3 2.7 0.0021 18.5 0.5 2.8 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 CQR56484.1 - 0.0019 17.9 0.0 0.075 12.7 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 CQR56484.1 - 0.0021 18.6 0.1 0.0068 16.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain DEAD PF00270.29 CQR56484.1 - 0.0029 17.4 0.6 1.6 8.5 0.0 3.5 3 1 1 4 4 4 1 DEAD/DEAH box helicase TIP49 PF06068.13 CQR56484.1 - 0.004 16.4 0.3 0.01 15.1 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_28 PF13521.6 CQR56484.1 - 0.014 15.7 0.6 0.044 14.0 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA_7 PF12775.7 CQR56484.1 - 0.017 14.6 0.1 0.088 12.3 0.0 2.1 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_33 PF13671.6 CQR56484.1 - 0.021 15.0 0.0 0.052 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 CQR56484.1 - 0.026 13.9 0.3 0.088 12.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ATP-synt_ab PF00006.25 CQR56484.1 - 0.034 13.8 0.1 0.07 12.8 0.1 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 CQR56484.1 - 0.037 13.8 0.0 0.089 12.5 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.15 CQR56484.1 - 0.041 13.8 1.1 1.7 8.5 0.1 2.6 2 0 0 2 2 2 0 NTPase ResIII PF04851.15 CQR56484.1 - 0.048 13.7 0.1 0.96 9.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 CQR56484.1 - 0.055 13.2 0.1 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 CQR56484.1 - 0.058 13.0 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 CQR56484.1 - 0.09 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 CQR56484.1 - 0.17 12.3 1.6 6.1 7.3 0.1 2.9 2 1 0 2 2 2 0 AAA domain Proteasome PF00227.26 CQR56485.1 - 7e-24 84.4 0.3 1.1e-23 83.7 0.3 1.3 1 1 0 1 1 1 1 Proteasome subunit GIDA PF01134.22 CQR56486.1 - 5.6e-113 378.0 0.0 6.7e-113 377.7 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 CQR56486.1 - 0.00018 20.8 0.1 0.00018 20.8 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 CQR56486.1 - 0.00022 21.4 0.0 0.00069 19.8 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 CQR56486.1 - 0.00046 19.5 0.1 0.00096 18.5 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 CQR56486.1 - 0.0006 19.7 0.4 0.0013 18.7 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 CQR56486.1 - 0.00093 18.9 0.2 0.0058 16.2 0.1 2.0 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR56486.1 - 0.021 13.9 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 CQR56486.1 - 0.028 15.0 0.0 0.056 14.0 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 CQR56486.1 - 0.03 13.6 0.2 1.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase HI0933_like PF03486.14 CQR56486.1 - 0.039 12.7 0.2 0.27 9.9 0.1 2.1 2 0 0 2 2 2 0 HI0933-like protein Topoisom_bac PF01131.20 CQR56487.1 - 4.7e-133 444.2 1.1 6.7e-133 443.7 1.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 CQR56487.1 - 1.4e-31 108.0 19.9 1.9e-14 53.1 3.2 3.4 3 0 0 3 3 3 3 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 CQR56487.1 - 7.7e-30 103.2 0.7 2.6e-29 101.5 0.1 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.6 CQR56487.1 - 3.1e-05 24.3 0.2 0.00021 21.7 0.1 2.5 2 1 0 2 2 1 1 Toprim domain Lar_restr_allev PF14354.6 CQR56487.1 - 0.0096 16.3 0.7 0.0096 16.3 0.7 3.2 3 0 0 3 3 3 1 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.16 CQR56487.1 - 0.016 15.0 0.4 0.016 15.0 0.4 3.2 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit Toprim_3 PF13362.6 CQR56487.1 - 0.062 13.7 0.0 0.19 12.1 0.0 1.8 1 0 0 1 1 1 0 Toprim domain Auto_anti-p27 PF06677.12 CQR56487.1 - 0.066 13.4 8.1 0.42 10.8 2.0 3.3 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DinB PF05163.12 CQR56487.1 - 0.11 12.4 0.2 0.3 11.0 0.2 1.7 1 0 0 1 1 1 0 DinB family zf-ribbon_3 PF13248.6 CQR56487.1 - 0.23 10.9 5.2 17 5.0 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 CQR56487.1 - 0.6 10.2 6.2 4.1 7.5 0.3 2.5 2 1 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 CQR56487.1 - 1.9 8.7 13.2 5 7.3 0.3 4.4 4 0 0 4 4 4 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 CQR56487.1 - 2.1 8.1 9.0 0.22 11.2 2.5 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DNA_processg_A PF02481.15 CQR56488.1 - 3.9e-78 261.5 0.0 5.2e-78 261.1 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A DprA_WH PF17782.1 CQR56488.1 - 1.9e-06 27.8 0.0 4.2e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 DprA winged helix domain CoA_binding PF02629.19 CQR56489.1 - 2.5e-25 89.0 1.6 2.5e-25 89.0 1.6 2.1 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 CQR56489.1 - 1.4e-17 63.9 0.3 2.3e-17 63.3 0.3 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 CQR56489.1 - 5e-08 32.8 0.0 9e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 CQR56489.1 - 0.072 13.6 0.2 0.82 10.2 0.1 2.4 3 0 0 3 3 3 0 CoA binding domain ATP-grasp_2 PF08442.10 CQR56490.1 - 1.5e-79 266.2 5.5 2.3e-79 265.7 5.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 CQR56490.1 - 3.5e-24 85.4 1.5 7.5e-24 84.3 1.5 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 CQR56490.1 - 3.1e-14 53.0 9.2 4.7e-14 52.4 6.3 2.4 2 1 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 CQR56490.1 - 6.9e-06 26.0 0.6 1.6e-05 24.8 0.6 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 CQR56490.1 - 1.2e-05 24.9 0.7 2.1e-05 24.1 0.7 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 CQR56490.1 - 0.026 14.1 0.7 0.046 13.3 0.7 1.5 1 1 0 1 1 1 0 ATP-grasp domain MarR PF01047.22 CQR56491.1 - 7.4e-16 57.8 0.1 1.8e-15 56.6 0.1 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR56491.1 - 1.2e-10 41.1 0.1 1.8e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR56491.1 - 1e-06 29.1 0.1 1.5e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 CQR56491.1 - 3.9e-05 23.8 0.0 5.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 CQR56491.1 - 0.00016 21.4 0.1 0.00025 20.8 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 CQR56491.1 - 0.0015 18.0 0.0 0.006 16.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 CQR56491.1 - 0.0021 18.0 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 CQR56491.1 - 0.0089 16.4 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 CQR56491.1 - 0.02 14.8 0.0 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 CQR56491.1 - 0.021 14.6 0.1 0.032 14.1 0.1 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.7 CQR56491.1 - 0.055 13.5 0.2 0.12 12.5 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain OsmC PF02566.19 CQR56492.1 - 4e-19 68.9 0.0 5.9e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein Mg_chelatase PF01078.21 CQR56493.1 - 4.7e-89 297.2 0.0 7.4e-89 296.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ChlI PF13541.6 CQR56493.1 - 1.4e-45 154.0 0.0 2.9e-45 153.0 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Mg_chelatase_C PF13335.6 CQR56493.1 - 4e-28 97.9 1.1 4e-28 97.9 1.1 1.8 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI C-terminal MCM PF00493.23 CQR56493.1 - 8.9e-08 31.5 0.0 0.00052 19.2 0.0 2.9 3 0 0 3 3 3 2 MCM P-loop domain AAA_5 PF07728.14 CQR56493.1 - 9.9e-07 28.8 0.1 1.8e-05 24.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Lon_C PF05362.13 CQR56493.1 - 1.9e-05 24.3 0.1 3.3e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain RuvB_N PF05496.12 CQR56493.1 - 6e-05 22.8 0.1 0.37 10.5 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 CQR56493.1 - 0.00036 20.8 0.0 0.0036 17.6 0.0 2.4 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.26 CQR56493.1 - 0.00049 19.8 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 CQR56493.1 - 0.0011 19.4 0.0 0.0025 18.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 CQR56493.1 - 0.0013 19.1 0.1 0.011 16.1 0.1 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR56493.1 - 0.0044 17.4 0.1 0.016 15.6 0.0 2.0 2 0 0 2 2 1 1 AAA ATPase domain AAA_30 PF13604.6 CQR56493.1 - 0.0081 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 CQR56493.1 - 0.014 15.7 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 CQR56493.1 - 0.016 14.6 0.0 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 CQR56493.1 - 0.017 14.9 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 CQR56493.1 - 0.026 14.6 0.0 2.7 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_7 PF12775.7 CQR56493.1 - 0.032 13.7 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 CQR56493.1 - 0.044 14.3 0.5 0.36 11.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_32 PF13654.6 CQR56493.1 - 0.058 12.2 0.1 0.58 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 CQR56493.1 - 0.079 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 CQR56493.1 - 0.08 13.1 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR56493.1 - 0.17 11.8 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Metallophos PF00149.28 CQR56494.1 - 0.00032 21.3 1.6 0.00044 20.8 1.6 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR56494.1 - 0.015 15.5 0.9 0.066 13.4 0.9 1.8 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Elf1 PF05129.13 CQR56495.1 - 0.00082 19.4 2.1 0.0013 18.7 2.1 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Thioredoxin_3 PF13192.6 CQR56495.1 - 0.19 11.8 2.5 3.4 7.8 0.3 2.6 3 0 0 3 3 3 0 Thioredoxin domain zf-H2C2_2 PF13465.6 CQR56495.1 - 0.21 12.1 5.5 0.89 10.1 1.6 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf_UBZ PF18439.1 CQR56495.1 - 0.34 10.5 3.2 14 5.4 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger UPF0102 PF02021.17 CQR56496.1 - 2.6e-28 98.1 0.1 3.2e-28 97.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.11 CQR56496.1 - 1.9e-05 25.1 0.0 2.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 CQR56496.1 - 0.011 15.7 0.1 0.014 15.4 0.1 1.2 1 0 0 1 1 1 0 Restriction endonuclease Bac_export_2 PF01312.19 CQR56497.1 - 6.4e-20 71.6 0.6 7.1e-20 71.5 0.6 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family RNase_II_C_S1 PF18614.1 CQR56498.1 - 0.00051 19.9 1.6 0.00051 19.9 1.6 3.0 2 0 0 2 2 2 1 RNase II-type exonuclease C-terminal S1 domain Flg_hook PF02120.16 CQR56498.1 - 0.024 14.5 0.8 0.11 12.4 0.1 2.3 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK RNase_HII PF01351.18 CQR56499.1 - 3e-36 125.1 0.1 3.5e-36 124.9 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII MMR_HSR1 PF01926.23 CQR56500.1 - 1.1e-16 60.9 0.0 2.2e-15 56.8 0.0 2.4 3 0 0 3 3 3 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR56500.1 - 1.5e-07 31.1 0.1 5.3e-07 29.3 0.0 1.9 3 0 0 3 3 3 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 CQR56500.1 - 1.8e-06 27.9 0.0 0.00024 21.1 0.0 2.4 1 1 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 CQR56500.1 - 0.00027 21.0 0.0 0.18 11.8 0.0 2.3 1 1 1 2 2 2 2 Dynamin family MeaB PF03308.16 CQR56500.1 - 0.0051 15.8 0.3 0.11 11.5 0.1 2.3 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 CQR56500.1 - 0.0069 15.9 0.0 0.31 10.5 0.0 2.7 1 1 2 3 3 3 1 ADP-ribosylation factor family AAA_16 PF13191.6 CQR56500.1 - 0.016 15.6 0.2 1.7 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain TniB PF05621.11 CQR56500.1 - 0.077 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial TniB protein AIG1 PF04548.16 CQR56500.1 - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 AIG1 family AAA_25 PF13481.6 CQR56500.1 - 0.13 11.8 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peptidase_S24 PF00717.23 CQR56501.1 - 5.1e-16 58.4 1.3 1.1e-15 57.3 1.3 1.6 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 CQR56501.1 - 3e-12 46.5 0.5 1.7e-11 44.1 0.5 2.1 1 1 0 1 1 1 1 Signal peptidase, peptidase S26 GP57 PF17594.2 CQR56501.1 - 0.086 12.6 0.2 0.19 11.5 0.2 1.5 1 0 0 1 1 1 0 Phage Tail fiber assembly helper gene product 57 SurA_N_3 PF13624.6 CQR56501.1 - 0.29 10.9 0.4 1.2 9.0 0.1 1.8 2 0 0 2 2 2 0 SurA N-terminal domain Ribosomal_L19 PF01245.20 CQR56502.1 - 3.9e-54 181.3 3.3 4.4e-54 181.1 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19 GPR15L PF15854.5 CQR56503.1 - 0.03 14.6 3.8 0.09 13.0 3.8 1.8 1 1 0 1 1 1 0 G-protein coupled receptor ligand 15 TssD PF17642.1 CQR56503.1 - 0.084 12.7 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Hemolysin coregulated protein Hcp (TssD) AA_permease_C PF13906.6 CQR56503.1 - 0.12 12.5 0.6 0.17 12.0 0.6 1.2 1 0 0 1 1 1 0 C-terminus of AA_permease Ribosomal_L6 PF00347.23 CQR56504.1 - 0.022 15.5 0.2 0.072 13.8 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein L6 Tmemb_cc2 PF10267.9 CQR56504.1 - 0.028 13.6 3.2 0.036 13.2 3.2 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein LSM PF01423.22 CQR56505.1 - 0.013 15.2 0.3 0.021 14.5 0.3 1.3 1 1 0 1 1 1 0 LSM domain DUF150_C PF17384.2 CQR56505.1 - 0.12 12.5 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 RimP C-terminal SH3 domain HTH_18 PF12833.7 CQR56507.1 - 5.6e-22 77.8 0.6 9.8e-22 77.0 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56507.1 - 1e-19 70.1 0.0 3.8e-12 46.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family tRNA_m1G_MT PF01746.21 CQR56508.1 - 3.6e-70 235.7 0.0 5.6e-53 179.6 0.0 2.0 1 1 1 2 2 2 2 tRNA (Guanine-1)-methyltransferase RimM PF01782.18 CQR56509.1 - 3.5e-23 81.6 0.0 9.9e-23 80.2 0.0 1.7 2 0 0 2 2 2 1 RimM N-terminal domain PRC PF05239.16 CQR56509.1 - 4.1e-10 39.6 1.0 8.6e-10 38.6 0.7 1.7 2 0 0 2 2 2 1 PRC-barrel domain KH_4 PF13083.6 CQR56510.1 - 2.2e-22 78.7 0.7 2.4e-22 78.6 0.7 1.0 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 CQR56510.1 - 0.00083 19.1 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 CQR56510.1 - 0.034 14.2 0.4 0.057 13.5 0.2 1.6 1 1 0 1 1 1 0 NusA-like KH domain T7SS_ESX_EspC PF10824.8 CQR56510.1 - 0.036 14.5 0.1 0.056 13.9 0.1 1.3 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm SH3_14 PF18343.1 CQR56510.1 - 0.11 12.6 0.2 0.29 11.2 0.1 1.6 1 1 1 2 2 2 0 Dda helicase SH3 domain Ribosomal_S16 PF00886.19 CQR56511.1 - 8.4e-24 83.4 0.0 1e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S16 SRP54 PF00448.22 CQR56512.1 - 4e-79 264.8 0.3 9.9e-79 263.5 0.3 1.7 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 CQR56512.1 - 5.4e-34 116.8 3.8 5.4e-34 116.8 3.8 3.1 3 1 1 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.19 CQR56512.1 - 1e-21 76.9 1.4 1e-21 76.9 1.4 3.0 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 CQR56512.1 - 2.5e-06 26.9 0.1 6.7e-06 25.5 0.1 1.8 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 CQR56512.1 - 4.3e-06 26.8 0.2 1.3e-05 25.2 0.2 1.9 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 CQR56512.1 - 5.3e-05 22.9 1.3 0.00016 21.3 1.3 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 CQR56512.1 - 0.0002 21.3 0.6 0.0068 16.3 0.1 2.8 2 1 0 2 2 2 1 Adenylylsulphate kinase AAA_17 PF13207.6 CQR56512.1 - 0.00038 20.9 0.1 0.00038 20.9 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 CQR56512.1 - 0.0011 19.2 0.0 0.0027 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR56512.1 - 0.0021 18.3 0.2 0.0061 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 CQR56512.1 - 0.0024 17.6 0.3 0.0063 16.2 0.3 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR56512.1 - 0.0031 18.1 0.0 0.011 16.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.6 CQR56512.1 - 0.0093 15.9 6.4 0.017 15.1 0.4 3.3 3 1 0 3 3 3 1 AAA domain 6PF2K PF01591.18 CQR56512.1 - 0.013 14.8 0.3 0.04 13.2 0.0 1.9 2 0 0 2 2 2 0 6-phosphofructo-2-kinase ArsA_ATPase PF02374.15 CQR56512.1 - 0.036 13.3 9.5 0.13 11.4 0.0 4.2 4 1 0 4 4 4 0 Anion-transporting ATPase Arf PF00025.21 CQR56512.1 - 0.053 13.0 0.3 0.14 11.6 0.3 1.7 1 1 0 1 1 1 0 ADP-ribosylation factor family Tex_YqgF PF16921.5 CQR56512.1 - 0.065 13.7 0.1 3.4 8.1 0.1 2.4 2 0 0 2 2 2 0 Tex protein YqgF-like domain ResIII PF04851.15 CQR56512.1 - 0.25 11.4 2.3 2.3 8.2 2.3 2.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit MMR_HSR1 PF01926.23 CQR56512.1 - 0.3 11.2 7.2 0.097 12.8 1.4 3.0 3 1 0 3 3 3 0 50S ribosome-binding GTPase KTI12 PF08433.10 CQR56512.1 - 0.58 9.6 3.1 6.7 6.1 0.0 2.7 3 1 0 3 3 3 0 Chromatin associated protein KTI12 UPF0122 PF04297.14 CQR56513.1 - 1.6e-31 108.5 3.1 1.9e-31 108.3 3.1 1.1 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 CQR56513.1 - 1.4e-06 27.7 0.0 2.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Mga PF05043.13 CQR56513.1 - 5e-06 27.0 1.0 9.5e-06 26.1 1.0 1.6 1 1 0 1 1 1 1 Mga helix-turn-helix domain HTH_10 PF04967.12 CQR56513.1 - 3.6e-05 23.5 2.2 0.00011 21.9 0.4 2.4 2 1 0 2 2 2 1 HTH DNA binding domain HTH_28 PF13518.6 CQR56513.1 - 4.6e-05 23.4 0.0 8.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR56513.1 - 5.8e-05 23.0 0.0 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 CQR56513.1 - 7.5e-05 22.3 0.3 0.00019 21.0 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 CQR56513.1 - 0.00015 21.5 0.0 0.0076 16.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.6 CQR56513.1 - 0.00027 20.7 0.1 0.00068 19.4 0.0 1.7 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_40 PF14493.6 CQR56513.1 - 0.0065 16.9 0.1 0.0088 16.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GcrA PF07750.11 CQR56513.1 - 0.018 15.5 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 GcrA cell cycle regulator DUF2089 PF09862.9 CQR56513.1 - 0.025 14.6 0.3 0.032 14.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_20 PF12840.7 CQR56513.1 - 0.027 14.5 0.0 0.082 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 CQR56513.1 - 0.028 14.0 0.0 0.083 12.5 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_22 PF13309.6 CQR56513.1 - 0.032 14.3 0.2 0.15 12.1 0.0 2.2 3 0 0 3 3 3 0 HTH domain HTH_23 PF13384.6 CQR56513.1 - 0.036 13.9 0.0 0.064 13.1 0.0 1.7 1 1 0 1 1 1 0 Homeodomain-like domain Phage_antitermQ PF06530.12 CQR56513.1 - 0.049 13.5 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q GerE PF00196.19 CQR56513.1 - 0.065 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Terminase_5 PF06056.12 CQR56513.1 - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 CQR56513.1 - 0.12 12.4 0.1 0.77 9.9 0.0 2.3 1 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 CQR56513.1 - 0.13 12.3 0.0 0.21 11.6 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix HlyIII PF03006.20 CQR56514.1 - 5.8e-42 143.9 24.5 6.8e-42 143.7 24.5 1.0 1 0 0 1 1 1 1 Haemolysin-III related Imm12 PF15560.6 CQR56514.1 - 0.1 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 12 Peptidase_M32 PF02074.15 CQR56515.1 - 4.7e-183 609.4 0.0 5.3e-183 609.3 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF4352 PF11611.8 CQR56516.1 - 3.9e-05 23.9 0.9 0.00027 21.2 0.9 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) Cu_amine_oxidN1 PF07833.11 CQR56516.1 - 0.049 14.1 0.1 0.16 12.5 0.0 1.9 2 0 0 2 2 2 0 Copper amine oxidase N-terminal domain Pro_CA PF00484.19 CQR56517.1 - 6.1e-18 65.6 0.0 9.4e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Carbonic anhydrase DUF2207 PF09972.9 CQR56518.1 - 0.0086 14.9 0.2 0.009 14.8 0.2 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) SARAF PF06682.12 CQR56518.1 - 0.11 12.2 4.9 0.071 12.8 2.7 1.7 1 1 1 2 2 2 0 SOCE-associated regulatory factor of calcium homoeostasis DUF3169 PF11368.8 CQR56518.1 - 0.16 11.5 4.2 0.043 13.3 1.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) TrbL PF04610.14 CQR56518.1 - 0.21 11.3 9.8 0.92 9.2 9.8 1.7 1 1 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein PDR_CDR PF06422.12 CQR56518.1 - 0.65 9.9 3.0 9.1 6.3 0.6 2.4 2 1 0 2 2 2 0 CDR ABC transporter Phage_holin_3_6 PF07332.11 CQR56518.1 - 8.1 6.5 9.1 0.51 10.4 3.0 1.9 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Phage_holin_2_4 PF16082.5 CQR56518.1 - 8.6 6.2 8.0 42 4.0 8.0 2.1 1 1 0 1 1 1 0 Bacteriophage holin family, superfamily II-like DUF2653 PF10850.8 CQR56519.1 - 2.9e-35 120.3 0.3 3.3e-35 120.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2653) Ret2_MD PF18528.1 CQR56519.1 - 0.0021 18.4 0.1 0.0048 17.2 0.1 1.6 1 1 1 2 2 2 1 RNA editing 3' terminal uridylyl transferase 2 middle domain PEX-2N PF09263.10 CQR56519.1 - 0.14 12.5 0.1 0.29 11.5 0.1 1.6 1 1 1 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Peptidase_S66C PF17676.1 CQR56520.1 - 7.1e-27 94.4 0.0 1.2e-26 93.6 0.0 1.4 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Peptidase_S66 PF02016.15 CQR56520.1 - 5.9e-22 78.0 0.0 8.8e-22 77.5 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain LSM PF01423.22 CQR56521.1 - 0.046 13.4 0.0 0.068 12.9 0.0 1.2 1 0 0 1 1 1 0 LSM domain Tudor_2 PF18104.1 CQR56521.1 - 0.047 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Jumonji domain-containing protein 2A Tudor domain Asp23 PF03780.13 CQR56522.1 - 1.9e-28 99.0 4.1 2.1e-28 98.9 4.1 1.0 1 0 0 1 1 1 1 Asp23 family, cell envelope-related function F-112 PF09645.10 CQR56522.1 - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 F-112 protein AI-2E_transport PF01594.16 CQR56523.1 - 5.9e-65 219.6 37.7 6.6e-65 219.4 37.1 1.3 1 1 0 1 1 1 1 AI-2E family transporter HATPase_c PF02518.26 CQR56524.1 - 3.5e-23 82.2 0.0 6.2e-23 81.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56524.1 - 1.1e-15 57.3 0.1 5e-15 55.3 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR56524.1 - 5.2e-08 33.1 0.0 1.5e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 CQR56524.1 - 0.0064 16.3 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRAP_alpha PF03896.16 CQR56524.1 - 0.11 11.7 0.3 0.23 10.6 0.3 1.5 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit DAHP_synth_1 PF00793.20 CQR56524.1 - 0.11 11.3 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 DAHP synthetase I family DUF2070 PF09843.9 CQR56524.1 - 0.22 9.7 0.6 0.35 9.1 0.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Response_reg PF00072.24 CQR56525.1 - 1.3e-30 105.9 0.2 1.9e-30 105.3 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56525.1 - 1.1e-26 92.7 0.1 2.2e-26 91.7 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DegV PF02645.16 CQR56526.1 - 6e-67 225.9 0.1 6.7e-67 225.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein, DegV family COG1307 Dak1_2 PF13684.6 CQR56526.1 - 3e-11 43.0 0.1 3.9e-11 42.6 0.1 1.1 1 0 0 1 1 1 1 Dihydroxyacetone kinase family DXP_synthase_N PF13292.6 CQR56526.1 - 0.075 12.2 0.1 1.2 8.3 0.0 2.1 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase CARD_2 PF16739.5 CQR56526.1 - 0.1 12.6 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Caspase recruitment domain Hydantoinase_B PF02538.14 CQR56528.1 - 3.4e-143 477.8 0.1 4e-143 477.6 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_B PF02538.14 CQR56529.1 - 3.4e-72 243.5 0.0 4.1e-72 243.3 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 CQR56530.1 - 8.1e-99 330.5 3.8 8.3e-98 327.2 1.2 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 CQR56530.1 - 1.2e-51 175.0 0.0 7.1e-50 169.2 0.0 2.7 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 CQR56530.1 - 0.0008 18.1 0.3 0.93 8.0 0.0 2.4 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 CQR56530.1 - 0.017 14.6 0.0 0.066 12.7 0.0 2.0 2 0 0 2 2 2 0 ROK family Transp_cyt_pur PF02133.15 CQR56531.1 - 4e-30 105.0 50.0 6.7e-30 104.2 50.0 1.3 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Romo1 PF10247.9 CQR56531.1 - 0.023 15.1 8.1 0.023 15.1 8.1 3.6 3 0 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 OsmC PF02566.19 CQR56532.1 - 6e-12 45.9 0.0 7.2e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein TetR_C_6 PF13977.6 CQR56533.1 - 6.6e-06 26.3 0.4 7.4e-06 26.2 0.4 1.1 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_2 PF08361.11 CQR56533.1 - 1.3e-05 25.2 0.0 1.6e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 MAATS-type transcriptional repressor, C-terminal region TetR_C_11 PF16859.5 CQR56533.1 - 0.0029 17.9 0.3 0.0037 17.5 0.3 1.1 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 CQR56533.1 - 0.021 15.1 0.3 0.031 14.5 0.0 1.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_26 PF17934.1 CQR56533.1 - 0.058 13.7 0.0 0.088 13.2 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_8 PF14278.6 CQR56533.1 - 0.07 13.2 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator C-terminal region cIII PF08134.11 CQR56533.1 - 0.14 11.9 0.4 12 5.7 0.0 2.4 2 0 0 2 2 2 0 cIII protein family Lactamase_B_3 PF13483.6 CQR56534.1 - 8e-28 97.4 0.1 9.5e-28 97.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 CQR56534.1 - 1.1e-22 80.5 0.4 1.4e-22 80.3 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 CQR56534.1 - 7.2e-12 45.7 2.7 1.1e-11 45.2 2.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily MFS_1 PF07690.16 CQR56535.1 - 2.4e-38 132.0 50.7 2.4e-38 132.0 50.7 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Ceramidase PF05875.12 CQR56535.1 - 0.013 14.9 1.8 0.013 14.9 1.8 2.0 2 1 0 2 2 2 0 Ceramidase HTH_20 PF12840.7 CQR56536.1 - 6.8e-12 45.3 0.0 8.8e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR56536.1 - 2.6e-08 33.6 0.0 2e-07 30.8 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 CQR56536.1 - 0.00024 21.0 0.3 0.00038 20.4 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 CQR56536.1 - 0.00049 19.9 0.0 0.00085 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR56536.1 - 0.00068 19.1 0.0 0.0025 17.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 CQR56536.1 - 0.0018 18.1 0.5 0.015 15.2 0.1 2.4 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.6 CQR56536.1 - 0.0022 17.9 0.1 0.0035 17.3 0.1 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 CQR56536.1 - 0.0024 17.6 0.1 0.0042 16.8 0.1 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 CQR56536.1 - 0.0044 17.2 0.0 0.0065 16.6 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 CQR56536.1 - 0.011 16.1 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_40 PF14493.6 CQR56536.1 - 0.013 16.0 0.1 0.02 15.3 0.1 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.6 CQR56536.1 - 0.036 14.5 0.0 0.059 13.9 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 CQR56536.1 - 0.13 12.1 0.0 0.47 10.3 0.0 2.0 2 1 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.19 CQR56536.1 - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Thioredox_DsbH PF03190.15 CQR56537.1 - 2.4e-77 258.5 0.0 4.3e-77 257.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 CQR56537.1 - 3.4e-12 46.4 0.0 7.9e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 CQR56537.1 - 0.0044 17.5 0.0 0.0083 16.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.13 CQR56537.1 - 0.0057 15.8 0.5 1.1 8.3 0.1 2.6 2 1 1 3 3 3 2 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 CQR56537.1 - 0.026 14.1 0.1 7 6.1 0.0 2.3 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 LANC_like PF05147.13 CQR56537.1 - 0.056 12.0 0.1 3.4 6.1 0.0 3.0 3 0 0 3 3 3 0 Lanthionine synthetase C-like protein Phage_holin_Dp1 PF16938.5 CQR56538.1 - 0.0082 16.3 0.3 0.0082 16.3 0.3 2.8 2 2 0 2 2 2 1 Putative phage holin Dp-1 Got1 PF04178.12 CQR56538.1 - 2.5 8.5 17.0 3.6 8.1 15.6 1.7 1 1 0 1 1 1 0 Got1/Sft2-like family SUR7 PF06687.12 CQR56538.1 - 3.2 7.3 17.4 3.7 7.1 4.3 2.2 1 1 1 2 2 2 0 SUR7/PalI family DUF1007 PF06226.13 CQR56539.1 - 0.098 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1007) DUF2833 PF11090.8 CQR56539.1 - 0.14 12.5 0.6 0.55 10.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2833) KR PF08659.10 CQR56540.1 - 0.035 14.0 0.0 0.09 12.7 0.0 1.6 2 0 0 2 2 2 0 KR domain HEAT_UF PF18817.1 CQR56541.1 - 0.032 14.5 0.1 0.27 11.5 0.1 2.4 2 0 0 2 2 2 0 Repeat of uncharacterized protein PH0542 Thioredox_DsbH PF03190.15 CQR56542.1 - 5.6e-20 71.9 0.0 6.1e-20 71.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 CQR56542.1 - 0.065 13.4 0.0 0.11 12.7 0.0 1.4 2 0 0 2 2 2 0 Thioredoxin-like FAST_2 PF08368.12 CQR56543.1 - 0.063 14.1 1.3 3.5 8.5 0.0 3.2 3 0 0 3 3 3 0 FAST kinase-like protein, subdomain 2 TIR_2 PF13676.6 CQR56545.1 - 1.2e-07 32.3 0.0 2.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 TIR domain Methyltransf_5 PF01795.19 CQR56545.1 - 0.087 12.3 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family Flagellin_D3 PF08884.11 CQR56546.1 - 0.03 14.7 0.2 0.038 14.4 0.2 1.1 1 0 0 1 1 1 0 Flagellin D3 domain Abhydrolase_1 PF00561.20 CQR56547.1 - 2.1e-07 30.9 0.0 3.9e-07 30.0 0.0 1.4 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR56547.1 - 4.2e-05 24.2 0.0 4.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR56547.1 - 0.021 14.1 0.0 0.053 12.8 0.0 1.7 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Orf78 PF06024.12 CQR56547.1 - 0.033 14.5 0.1 0.058 13.7 0.1 1.4 1 0 0 1 1 1 0 Orf78 (ac78) PAF-AH_p_II PF03403.13 CQR56548.1 - 1e-23 83.5 0.0 4.1e-13 48.6 0.0 2.3 2 0 0 2 2 2 2 Platelet-activating factor acetylhydrolase, isoform II DsbD PF02683.15 CQR56548.1 - 0.0062 16.4 3.0 0.012 15.5 3.0 1.4 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Chlorophyllase2 PF12740.7 CQR56548.1 - 0.11 11.4 0.0 0.42 9.5 0.0 1.9 1 1 0 1 1 1 0 Chlorophyllase enzyme Peptidase_U4 PF03419.13 CQR56548.1 - 9.9 5.3 6.6 14 4.8 6.6 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4386 PF14329.6 CQR56549.1 - 2.5e-29 102.6 17.9 2.9e-29 102.5 17.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) Adeno_PX PF05829.12 CQR56549.1 - 0.066 13.1 0.1 0.21 11.5 0.1 1.8 1 0 0 1 1 1 0 Adenovirus late L2 mu core protein (Protein X) MotA_ExbB PF01618.16 CQR56549.1 - 0.18 11.5 2.5 0.27 11.0 0.1 2.2 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family YlaC PF10777.9 CQR56549.1 - 2.1 8.2 5.4 0.2 11.5 0.4 1.8 2 1 0 2 2 2 0 Inner membrane protein YlaC DUF2721 PF11026.8 CQR56549.1 - 6.9 6.6 14.0 0.48 10.3 3.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) DUF4923 PF16270.5 CQR56550.1 - 0.0042 16.9 1.0 0.13 12.0 0.3 2.2 2 0 0 2 2 2 1 Lipocalin-like domain (DUF4923) PLD_C PF12357.8 CQR56550.1 - 0.096 12.6 0.0 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 Phospholipase D C terminal Reg_prop PF07494.11 CQR56550.1 - 0.72 10.3 5.6 1.1 9.7 0.4 2.6 2 0 0 2 2 2 0 Two component regulator propeller Beta-lactamase PF00144.24 CQR56551.1 - 4.1e-55 187.3 0.0 5.3e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Sigma_reg_N PF13800.6 CQR56551.1 - 0.047 14.0 0.1 0.047 14.0 0.1 3.2 2 1 1 3 3 3 0 Sigma factor regulator N-terminal Replicase PF03090.17 CQR56551.1 - 0.066 13.1 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 Replicase family DUF4179 PF13786.6 CQR56551.1 - 0.081 13.4 3.0 0.31 11.5 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) UPF0239 PF06783.11 CQR56552.1 - 0.99 9.6 2.6 1.1 9.4 2.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0239) PAE PF03283.13 CQR56553.1 - 2.4e-10 40.1 0.0 6.8e-10 38.6 0.0 1.5 1 1 0 1 1 1 1 Pectinacetylesterase Trehalose_PPase PF02358.16 CQR56553.1 - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Trehalose-phosphatase Abhydrolase_3 PF07859.13 CQR56553.1 - 0.16 11.8 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 alpha/beta hydrolase fold SMI1_KNR4 PF09346.10 CQR56554.1 - 6.1e-26 91.4 0.0 8.6e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) SUKH_6 PF14568.6 CQR56554.1 - 6.7e-06 26.5 0.0 1.6e-05 25.3 0.0 1.7 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_5 PF14567.6 CQR56554.1 - 0.0025 17.5 0.0 0.1 12.3 0.1 2.3 2 0 0 2 2 2 1 SMI1-KNR4 cell-wall Acetyltransf_10 PF13673.7 CQR56555.1 - 1.8e-10 40.8 0.1 2.5e-10 40.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56555.1 - 4.5e-09 36.6 0.1 5.9e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR56555.1 - 1.6e-05 25.2 0.1 2.6e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56555.1 - 0.072 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein PanZ PF12568.8 CQR56555.1 - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ TM1586_NiRdase PF14512.6 CQR56556.1 - 9e-40 136.5 0.0 1.3e-39 136.0 0.0 1.2 1 0 0 1 1 1 1 Putative TM nitroreductase Nitroreductase PF00881.24 CQR56556.1 - 1.1e-13 51.6 3.1 7.6e-06 26.1 0.1 4.1 2 2 2 4 4 4 4 Nitroreductase family OrfB_Zn_ribbon PF07282.11 CQR56557.1 - 2.7e-24 84.9 0.3 6.8e-24 83.6 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 CQR56557.1 - 2.7e-11 43.7 1.8 2.8e-11 43.7 0.3 1.9 2 0 0 2 2 2 1 Probable transposase NTP_transf_2 PF01909.23 CQR56558.1 - 3.2e-06 27.4 0.0 6.6e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 CQR56558.1 - 2.5e-05 24.3 0.1 0.00022 21.3 0.0 2.3 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase PTase_Orf2 PF11468.8 CQR56558.1 - 0.029 13.8 0.3 0.089 12.2 0.0 1.9 3 0 0 3 3 3 0 Aromatic prenyltransferase Orf2 3-dmu-9_3-mt PF06983.13 CQR56559.1 - 9.4e-06 26.2 0.2 1.4e-05 25.6 0.2 1.3 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase DUF5003 PF16394.5 CQR56559.1 - 0.031 13.4 0.0 0.039 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5003) Glyoxalase PF00903.25 CQR56559.1 - 0.061 13.5 0.0 0.098 12.9 0.0 1.5 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CdiI_3 PF18616.1 CQR56560.1 - 5.9e-32 109.4 0.1 7.5e-32 109.1 0.1 1.1 1 0 0 1 1 1 1 CDI immunity proteins HAD_2 PF13419.6 CQR56561.1 - 4.2e-26 92.1 0.0 5e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR56561.1 - 2.2e-09 38.0 0.0 2.8e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR56561.1 - 2.4e-07 31.2 0.0 4.1e-07 30.5 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 CQR56561.1 - 0.00079 19.2 0.0 0.038 13.8 0.0 2.2 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.6 CQR56561.1 - 0.0034 17.4 0.0 0.0052 16.8 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 CQR56561.1 - 0.044 13.9 0.0 0.26 11.4 0.0 2.3 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR56561.1 - 0.12 12.1 0.2 16 5.1 0.0 2.4 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 CQR56561.1 - 0.16 11.8 0.1 0.81 9.5 0.1 2.0 2 0 0 2 2 2 0 Acid Phosphatase Put_Phosphatase PF06888.12 CQR56561.1 - 0.17 11.3 0.0 1.9 7.8 0.0 2.1 1 1 1 2 2 2 0 Putative Phosphatase Methyltransf_11 PF08241.12 CQR56562.1 - 1.8e-18 67.0 0.0 3.4e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR56562.1 - 4.4e-18 65.7 0.0 5.3e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR56562.1 - 9.9e-18 64.6 0.0 1.7e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56562.1 - 1e-13 51.4 0.0 1.3e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR56562.1 - 1.9e-09 38.1 0.0 4.3e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR56562.1 - 4.7e-09 35.9 0.0 7.4e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 CQR56562.1 - 0.0013 18.4 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 CQR56562.1 - 0.0097 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 CQR56562.1 - 0.042 13.7 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase MetW PF07021.12 CQR56562.1 - 0.13 11.8 0.0 0.26 10.9 0.0 1.6 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Abhydrolase_6 PF12697.7 CQR56563.1 - 7.7e-14 52.8 0.0 1.1e-13 52.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 CQR56563.1 - 2.5e-12 47.0 0.0 5.7e-12 45.8 0.0 1.5 2 0 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 CQR56563.1 - 1.9e-06 27.3 0.0 3.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Palm_thioest PF02089.15 CQR56563.1 - 0.013 15.4 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Thioesterase PF00975.20 CQR56563.1 - 0.013 15.6 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Ser_hydrolase PF06821.13 CQR56563.1 - 0.017 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase Peptidase_S9 PF00326.21 CQR56563.1 - 0.036 13.5 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 CQR56563.1 - 0.065 13.0 0.3 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase family CBM_25 PF03423.13 CQR56564.1 - 1.6e-30 105.4 4.3 1.6e-30 105.4 4.3 3.0 1 1 2 3 3 3 1 Carbohydrate binding domain (family 25) fn3 PF00041.21 CQR56564.1 - 2.9e-10 40.4 4.9 0.00024 21.4 0.4 3.0 2 1 0 2 2 2 2 Fibronectin type III domain CBM53 PF16760.5 CQR56564.1 - 9.5e-08 32.5 1.6 3.6e-07 30.7 1.6 2.1 1 0 0 1 1 1 1 Starch/carbohydrate-binding module (family 53) CBM26 PF16738.5 CQR56564.1 - 0.025 14.8 1.8 0.091 13.0 1.8 2.0 1 0 0 1 1 1 0 Starch-binding module 26 RGI_lyase PF18370.1 CQR56564.1 - 0.03 14.6 6.1 1.2 9.5 0.2 2.4 2 0 0 2 2 2 0 Rhamnogalacturonan I lyases beta-sheet domain Glyco_hydro2_C5 PF18565.1 CQR56564.1 - 0.12 12.2 0.8 1.3 8.9 0.1 2.7 2 1 1 3 3 3 0 Glycoside hydrolase family 2 C-terminal domain 5 Pur_ac_phosph_N PF16656.5 CQR56564.1 - 5.6 7.6 14.6 14 6.3 5.7 3.7 2 2 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain Alpha-amylase PF00128.24 CQR56565.1 - 6.4e-29 101.6 7.2 5.4e-21 75.5 3.2 2.7 2 1 0 2 2 2 2 Alpha amylase, catalytic domain CBM_25 PF03423.13 CQR56565.1 - 7.2e-23 80.9 3.0 7.2e-23 80.9 3.0 4.6 6 0 0 6 6 6 1 Carbohydrate binding domain (family 25) CBM26 PF16738.5 CQR56565.1 - 5.5e-21 74.6 12.0 8.3e-17 61.2 2.1 3.4 3 0 0 3 3 3 2 Starch-binding module 26 RGI_lyase PF18370.1 CQR56565.1 - 3e-06 27.4 1.3 7.5e-06 26.2 1.3 1.6 1 0 0 1 1 1 1 Rhamnogalacturonan I lyases beta-sheet domain fn3 PF00041.21 CQR56565.1 - 1.3e-05 25.4 1.6 6.9e-05 23.1 1.6 2.4 1 0 0 1 1 1 1 Fibronectin type III domain CHB_HEX_C_1 PF13290.6 CQR56565.1 - 0.0027 17.7 4.7 0.0027 17.7 4.7 3.4 4 0 0 4 4 4 1 Chitobiase/beta-hexosaminidase C-terminal domain fn3_2 PF16893.5 CQR56565.1 - 0.0032 17.6 0.8 0.0068 16.5 0.8 1.6 1 0 0 1 1 1 1 Fibronectin type III domain Fn3_assoc PF13287.6 CQR56565.1 - 0.011 15.9 1.0 0.011 15.9 1.0 2.5 2 0 0 2 2 2 0 Fn3 associated Aminotran_5 PF00266.19 CQR56565.1 - 0.13 11.1 0.1 0.32 9.9 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class-V OrfB_IS605 PF01385.19 CQR56566.1 - 8.6e-28 97.0 6.2 8.6e-28 97.0 6.2 2.4 2 1 1 3 3 3 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR56566.1 - 5.7e-17 61.4 0.1 1.3e-16 60.2 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR56566.1 - 1.1e-11 44.0 3.2 2.5e-11 42.9 3.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Occludin_ELL PF07303.13 CQR56566.1 - 3.1 8.6 11.5 5.2 7.8 0.2 2.6 2 1 0 2 2 2 0 Occludin homology domain Trans_reg_C PF00486.28 CQR56567.1 - 5.5e-27 93.7 0.1 2e-26 91.8 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR56567.1 - 1.3e-24 86.5 0.0 1.8e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Aldo_ket_red PF00248.21 CQR56568.1 - 4.5e-82 275.6 0.0 5.3e-82 275.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MFS_2 PF13347.6 CQR56569.1 - 1.7e-57 194.9 35.2 2.2e-57 194.5 35.2 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein DUF1761 PF08570.10 CQR56569.1 - 0.0012 19.1 0.6 0.0012 19.1 0.6 3.7 4 1 0 4 4 4 1 Protein of unknown function (DUF1761) Response_reg PF00072.24 CQR56570.1 - 2.8e-26 91.9 0.1 8.4e-26 90.3 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR56570.1 - 1.7e-20 73.0 0.3 3.9e-20 71.9 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56570.1 - 2.6e-20 72.0 0.7 3.9e-10 39.6 0.2 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR56570.1 - 1e-11 45.1 0.1 3.5e-11 43.4 0.0 2.0 2 0 0 2 2 2 1 GGDEF-like domain GGDEF PF00990.21 CQR56570.1 - 0.0036 17.1 0.0 0.0098 15.6 0.0 1.8 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HTH_31 PF13560.6 CQR56570.1 - 0.087 13.2 0.7 0.89 9.9 0.0 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain PapB PF03333.13 CQR56570.1 - 0.088 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein His_kinase PF06580.13 CQR56571.1 - 3.5e-26 91.3 0.3 9.8e-26 89.9 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR56571.1 - 4.9e-14 52.7 1.3 9.4e-14 51.8 1.3 1.5 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR56571.1 - 5.5e-10 39.5 0.0 1.9e-09 37.8 0.0 2.0 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR56571.1 - 4.6e-08 33.6 0.1 1.9e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR56571.1 - 0.014 15.2 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3094 PF11293.8 CQR56571.1 - 0.068 12.9 0.1 0.18 11.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) DUF948 PF06103.11 CQR56571.1 - 0.24 11.7 3.4 0.13 12.5 0.7 2.0 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) KxDL PF10241.9 CQR56571.1 - 0.39 11.0 2.3 1.9 8.8 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein SBP_bac_1 PF01547.25 CQR56572.1 - 8.3e-35 121.2 0.0 1.1e-34 120.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR56572.1 - 4.7e-32 111.9 0.0 6.1e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR56572.1 - 1.1e-06 28.2 0.1 0.012 15.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR56572.1 - 0.00059 19.7 0.0 0.012 15.4 0.0 2.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein CPBP PF02517.16 CQR56573.1 - 3.3e-09 37.0 3.4 3.3e-09 37.0 3.4 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease HATPase_c PF02518.26 CQR56574.1 - 5e-10 39.9 0.1 8.8e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_3 PF07730.13 CQR56574.1 - 0.0092 16.5 0.2 0.027 15.0 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase PDZ_6 PF17820.1 CQR56574.1 - 0.011 15.6 0.3 0.032 14.1 0.3 1.8 1 0 0 1 1 1 0 PDZ domain PDZ_2 PF13180.6 CQR56574.1 - 0.013 15.8 0.0 0.029 14.7 0.0 1.6 1 0 0 1 1 1 0 PDZ domain HATPase_c_2 PF13581.6 CQR56574.1 - 0.1 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 CQR56575.1 - 7.7e-24 84.0 0.0 1.3e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR56575.1 - 5.5e-16 57.9 0.2 8.5e-16 57.3 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR56575.1 - 3.3e-06 26.7 1.2 5.7e-06 25.9 0.4 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_10 PF04967.12 CQR56575.1 - 0.00018 21.3 0.4 0.00085 19.1 0.2 2.3 2 1 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 CQR56575.1 - 0.00076 19.0 0.7 0.0017 17.8 0.7 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 CQR56575.1 - 0.0014 18.7 0.2 0.0037 17.4 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 CQR56575.1 - 0.0059 16.3 0.1 0.015 15.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR56575.1 - 0.0065 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 CQR56575.1 - 0.0088 15.8 0.1 0.027 14.3 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 CQR56575.1 - 0.018 14.6 0.0 0.05 13.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_ECF PF07638.11 CQR56575.1 - 0.019 14.9 0.3 0.061 13.2 0.1 1.9 2 1 0 2 2 2 0 ECF sigma factor HTH_20 PF12840.7 CQR56575.1 - 0.029 14.4 0.1 0.088 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 CQR56575.1 - 0.092 13.2 0.2 1.8 9.1 0.1 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 CQR56575.1 - 0.1 12.7 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_30 PF13556.6 CQR56575.1 - 0.11 12.3 0.6 0.26 11.1 0.2 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DXPR_C PF13288.6 CQR56575.1 - 0.12 12.6 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 DXP reductoisomerase C-terminal domain HTH_Tnp_ISL3 PF13542.6 CQR56575.1 - 0.15 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 CQR56575.1 - 0.16 12.0 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) ABC_tran PF00005.27 CQR56577.1 - 1.5e-21 77.4 0.3 4.1e-21 75.9 0.1 1.9 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 CQR56577.1 - 3.1e-17 63.3 0.1 2.3e-09 37.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56577.1 - 6.7e-07 29.0 0.5 0.015 14.7 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 CQR56577.1 - 8.7e-05 22.5 0.3 0.001 19.1 0.3 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_23 PF13476.6 CQR56577.1 - 9e-05 23.1 0.3 0.00012 22.7 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR56577.1 - 0.00012 22.0 0.0 0.031 14.0 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 CQR56577.1 - 0.0003 21.0 0.6 0.0007 19.9 0.1 2.0 2 1 0 2 2 1 1 AAA domain AAA_30 PF13604.6 CQR56577.1 - 0.00038 20.2 0.0 0.0053 16.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR56577.1 - 0.00086 19.0 0.5 0.0027 17.4 0.1 2.1 1 1 1 2 2 2 1 P-loop containing region of AAA domain ATPase PF06745.13 CQR56577.1 - 0.0011 18.4 0.3 0.0031 16.9 0.3 1.7 1 1 0 1 1 1 1 KaiC AAA_14 PF13173.6 CQR56577.1 - 0.0023 17.9 0.1 0.058 13.4 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA PF00004.29 CQR56577.1 - 0.0026 18.2 0.4 0.014 15.8 0.4 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 CQR56577.1 - 0.0084 15.9 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 CQR56577.1 - 0.011 15.9 0.0 0.03 14.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR56577.1 - 0.021 14.7 0.7 0.12 12.3 0.0 2.4 2 1 1 3 3 3 0 RsgA GTPase AAA_19 PF13245.6 CQR56577.1 - 0.033 14.5 0.1 0.097 13.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR56577.1 - 0.035 14.5 0.0 0.1 13.0 0.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 CQR56577.1 - 0.035 13.4 0.1 0.25 10.6 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.6 CQR56577.1 - 0.036 14.6 0.1 0.33 11.5 0.1 2.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 CQR56577.1 - 0.038 13.9 0.2 4 7.3 0.0 2.2 2 0 0 2 2 2 0 NTPase DUF3584 PF12128.8 CQR56577.1 - 0.039 11.5 0.2 0.079 10.5 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) AAA_27 PF13514.6 CQR56577.1 - 0.04 13.5 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR56577.1 - 0.045 13.5 0.9 5.9 6.6 0.2 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein cobW PF02492.19 CQR56577.1 - 0.1 12.2 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 CQR56577.1 - 0.1 12.8 0.0 0.27 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 CQR56577.1 - 0.13 12.1 0.3 0.33 10.9 0.1 1.7 2 0 0 2 2 2 0 NACHT domain Response_reg PF00072.24 CQR56579.1 - 1e-26 93.3 0.1 1.4e-26 92.9 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56579.1 - 1.6e-25 89.0 0.0 5.7e-25 87.2 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR56580.1 - 1.6e-20 73.7 0.1 4.7e-20 72.2 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56580.1 - 6.4e-08 32.5 0.0 1.8e-07 31.1 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 CQR56580.1 - 2.2e-06 27.5 0.0 5.9e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 GHKL domain DUF4719 PF15843.5 CQR56580.1 - 0.26 11.4 0.2 0.55 10.3 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4719) VanZ PF04892.12 CQR56581.1 - 5.7e-25 88.4 10.5 1.4e-24 87.2 10.5 1.6 1 0 0 1 1 1 1 VanZ like family DUF2809 PF10990.8 CQR56581.1 - 0.067 13.9 0.1 0.067 13.9 0.1 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2809) DUF4734 PF15881.5 CQR56581.1 - 0.1 12.8 0.2 0.18 12.0 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4734) DUF4131 PF13567.6 CQR56581.1 - 3.8 7.1 6.0 1.7 8.3 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 CQR56582.1 - 6.9e-47 159.4 3.7 4.7e-26 91.9 0.0 3.2 3 1 0 3 3 2 2 ABC transporter ABC_tran_Xtn PF12848.7 CQR56582.1 - 3.8e-20 71.7 7.4 6.8e-20 70.9 7.4 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56582.1 - 2e-13 50.8 2.6 0.0061 16.4 0.1 4.2 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56582.1 - 2.5e-08 33.7 10.7 0.00022 20.7 0.6 4.2 3 2 1 4 4 3 3 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 CQR56582.1 - 2e-06 27.8 0.1 0.13 12.4 0.1 3.2 3 0 0 3 3 3 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 CQR56582.1 - 7e-06 26.0 0.1 0.2 11.6 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 CQR56582.1 - 1.5e-05 24.6 0.1 0.14 11.9 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR56582.1 - 0.00014 22.4 6.0 0.28 11.7 0.1 3.3 3 0 0 3 3 3 2 AAA domain AAA_28 PF13521.6 CQR56582.1 - 0.00023 21.4 0.4 0.41 10.9 0.3 2.9 3 0 0 3 3 2 1 AAA domain NACHT PF05729.12 CQR56582.1 - 0.00047 20.1 2.9 0.045 13.7 0.2 2.9 3 0 0 3 3 3 1 NACHT domain AAA_16 PF13191.6 CQR56582.1 - 0.00067 20.1 0.1 0.052 13.9 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 CQR56582.1 - 0.00075 19.3 2.8 0.03 14.0 0.0 3.4 5 0 0 5 5 3 1 AAA domain NB-ARC PF00931.22 CQR56582.1 - 0.00076 18.7 3.0 0.091 11.9 0.0 3.5 4 0 0 4 4 4 1 NB-ARC domain AAA_22 PF13401.6 CQR56582.1 - 0.00086 19.6 2.0 0.25 11.6 0.2 3.3 2 2 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 CQR56582.1 - 0.0014 18.3 0.2 0.3 10.7 0.1 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.22 CQR56582.1 - 0.0014 18.9 1.4 0.51 10.8 0.0 3.0 3 0 0 3 3 2 1 RNA helicase TrwB_AAD_bind PF10412.9 CQR56582.1 - 0.002 17.1 0.8 0.24 10.3 0.1 2.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 CQR56582.1 - 0.0022 17.5 0.1 0.33 10.4 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_33 PF13671.6 CQR56582.1 - 0.0032 17.6 0.1 0.74 10.0 0.0 3.2 3 0 0 3 3 3 1 AAA domain TsaE PF02367.17 CQR56582.1 - 0.0075 16.3 0.5 0.75 9.8 0.0 2.7 2 1 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 CQR56582.1 - 0.0093 15.9 0.1 3.3 7.6 0.1 2.8 2 0 0 2 2 2 1 NTPase AAA PF00004.29 CQR56582.1 - 0.01 16.3 0.0 1.3 9.5 0.0 2.8 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 CQR56582.1 - 0.011 15.6 0.1 0.64 9.8 0.0 2.6 2 0 0 2 2 2 0 MukB N-terminal Dynamin_N PF00350.23 CQR56582.1 - 0.012 15.7 3.4 2.5 8.1 0.0 3.3 3 0 0 3 3 3 0 Dynamin family Roc PF08477.13 CQR56582.1 - 0.013 15.8 0.1 0.57 10.4 0.0 2.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 CQR56582.1 - 0.032 14.1 0.1 3.6 7.5 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 CQR56582.1 - 0.033 13.8 0.2 1.5 8.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain FeoB_N PF02421.18 CQR56582.1 - 0.039 13.5 0.6 6.7 6.2 0.1 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_15 PF13175.6 CQR56582.1 - 0.041 13.6 13.5 0.56 9.9 0.2 4.2 2 1 1 3 3 3 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 CQR56582.1 - 0.041 13.2 3.6 3.4 7.0 0.0 3.2 4 0 0 4 4 4 0 FtsK/SpoIIIE family T2SSE PF00437.20 CQR56582.1 - 0.042 12.9 0.0 0.95 8.5 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Septin PF00735.18 CQR56582.1 - 0.048 12.9 0.1 4.8 6.4 0.0 2.4 2 0 0 2 2 2 0 Septin SRP54 PF00448.22 CQR56582.1 - 0.083 12.5 0.9 2.2 7.9 0.3 2.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 CQR56582.1 - 0.083 11.9 1.2 2 7.3 0.0 2.6 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF87 PF01935.17 CQR56582.1 - 0.13 12.4 6.0 1.5 8.8 0.0 3.5 3 1 0 3 3 3 0 Helicase HerA, central domain AAA_14 PF13173.6 CQR56582.1 - 0.14 12.2 3.6 8.5 6.4 0.1 3.8 4 0 0 4 4 4 0 AAA domain AAA_30 PF13604.6 CQR56582.1 - 0.16 11.6 1.2 11 5.7 0.4 3.0 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 CQR56582.1 - 0.17 11.9 0.6 6.9 6.7 0.1 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 CQR56582.1 - 0.22 10.9 0.3 6.5 6.1 0.0 2.8 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AHSA1 PF08327.11 CQR56583.1 - 3e-12 46.8 0.5 3.7e-12 46.6 0.5 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF3284 PF11687.8 CQR56583.1 - 0.0065 16.3 0.7 0.0088 15.9 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3284) UPF0061 PF02696.14 CQR56584.1 - 7e-120 401.0 0.0 8.9e-120 400.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family COX5A PF02284.16 CQR56584.1 - 0.14 12.2 0.0 0.42 10.7 0.0 1.8 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Va Amidohydro_2 PF04909.14 CQR56585.1 - 2e-23 83.6 3.2 2.9e-23 83.1 3.2 1.4 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 CQR56585.1 - 2.6e-08 33.6 0.0 3.5e-08 33.1 0.0 1.3 1 1 0 1 1 1 1 TatD related DNase Acetyltransf_1 PF00583.25 CQR56586.1 - 8.7e-11 42.1 0.0 2.2e-10 40.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR56586.1 - 6.2e-09 35.9 0.0 1.4e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56586.1 - 1.1e-07 32.2 0.0 2.6e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 CQR56586.1 - 0.006 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR56586.1 - 0.058 14.1 0.0 0.15 12.7 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1573 PF07610.11 CQR56586.1 - 0.1 12.6 0.1 0.98 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) HxlR PF01638.17 CQR56587.1 - 5.8e-31 106.2 0.1 6.9e-31 106.0 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 CQR56587.1 - 2e-05 24.7 0.0 2.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 CQR56587.1 - 0.0057 16.6 0.1 0.012 15.5 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 CQR56587.1 - 0.096 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 CQR56587.1 - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 2 0 0 2 2 2 0 DprA winged helix domain DUF4364 PF14277.6 CQR56587.1 - 0.13 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Arginase PF00491.21 CQR56588.1 - 5.5e-14 52.3 0.0 3.6e-13 49.7 0.0 2.1 1 1 0 1 1 1 1 Arginase family Glyoxalase_3 PF13468.6 CQR56589.1 - 2.3e-36 125.5 0.0 2.9e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 CQR56589.1 - 0.011 16.0 0.0 0.18 12.0 0.0 2.2 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Phage_holin_2_2 PF10746.9 CQR56589.1 - 0.08 12.6 0.8 1.9 8.2 0.0 3.0 3 1 0 3 3 3 0 Phage holin T7 family, holin superfamily II Glyoxalase_6 PF18029.1 CQR56589.1 - 0.13 13.0 0.1 0.51 11.1 0.0 1.9 2 0 0 2 2 2 0 Glyoxalase-like domain P5CR_dimer PF14748.6 CQR56590.1 - 7.9e-23 80.7 0.0 1.6e-22 79.7 0.0 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 CQR56590.1 - 3.1e-07 30.9 0.6 5.9e-07 30.0 0.6 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Lipoprotein_9 PF03180.14 CQR56591.1 - 5.7e-52 176.2 0.8 6.9e-52 175.9 0.8 1.0 1 0 0 1 1 1 1 NLPA lipoprotein SBP_bac_3 PF00497.20 CQR56591.1 - 0.0052 16.2 0.5 0.032 13.7 0.1 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 CQR56591.1 - 0.0061 16.2 0.5 0.01 15.4 0.1 1.6 2 0 0 2 2 2 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.7 CQR56591.1 - 0.0064 16.1 0.2 0.013 15.1 0.1 1.5 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LPAM_1 PF08139.12 CQR56591.1 - 0.015 15.7 4.1 0.029 14.9 4.1 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site HSDR_N PF04313.14 CQR56591.1 - 0.018 15.0 0.0 0.17 11.8 0.0 2.2 2 1 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) URO-D PF01208.17 CQR56592.1 - 5.7e-25 88.2 0.0 1.2e-24 87.1 0.0 1.5 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) BPD_transp_1 PF00528.22 CQR56593.1 - 5.7e-17 62.1 18.7 5.7e-17 62.1 18.7 1.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR56594.1 - 2.2e-34 118.9 0.2 1.3e-33 116.5 0.0 2.0 2 1 0 2 2 2 1 ABC transporter NIL PF09383.10 CQR56594.1 - 2.8e-21 75.2 0.0 5.6e-21 74.2 0.0 1.6 1 0 0 1 1 1 1 NIL domain SMC_N PF02463.19 CQR56594.1 - 8.8e-08 31.9 0.4 2.3e-07 30.5 0.4 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR56594.1 - 1.7e-07 31.3 0.4 0.00023 21.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56594.1 - 7.3e-05 23.1 0.1 0.025 14.9 0.1 3.0 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR56594.1 - 0.0068 16.1 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR56594.1 - 0.012 16.0 0.1 0.037 14.4 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR56594.1 - 0.021 14.7 0.0 0.062 13.2 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase Flagellin_C PF00700.21 CQR56594.1 - 0.033 14.5 0.1 0.098 13.0 0.1 1.7 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region MMR_HSR1 PF01926.23 CQR56594.1 - 0.035 14.2 0.3 0.15 12.2 0.3 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase CcdB PF01845.17 CQR56594.1 - 0.045 14.0 0.1 0.29 11.4 0.0 2.3 2 0 0 2 2 2 0 CcdB protein SbcCD_C PF13558.6 CQR56594.1 - 0.046 14.0 0.1 0.36 11.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CQR56594.1 - 0.085 12.6 0.1 0.96 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain SpoU_sub_bind PF08032.12 CQR56594.1 - 0.092 13.0 0.1 1.6 9.1 0.0 2.7 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding ALS_ss_C PF10369.9 CQR56594.1 - 0.1 12.9 1.1 0.41 10.9 0.1 2.4 2 0 0 2 2 2 0 Small subunit of acetolactate synthase AAA_33 PF13671.6 CQR56594.1 - 0.16 12.1 0.0 0.38 10.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR56594.1 - 0.27 11.7 1.8 0.76 10.2 0.1 2.3 3 0 0 3 3 3 0 AAA domain Peptidase_M20 PF01546.28 CQR56595.1 - 9.4e-34 116.9 0.2 2.5e-33 115.5 0.2 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR56595.1 - 3.9e-13 49.3 0.3 7.9e-13 48.3 0.3 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Cys_Met_Meta_PP PF01053.20 CQR56596.1 - 2.8e-149 496.8 0.0 3.2e-149 496.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 CQR56596.1 - 6.7e-12 45.2 0.0 1.1e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 CQR56596.1 - 4.8e-10 38.9 0.1 1.2e-09 37.6 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 CQR56596.1 - 2.2e-09 37.1 0.0 7.7e-09 35.3 0.1 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.16 CQR56596.1 - 6.9e-09 35.0 0.0 9.5e-09 34.6 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.11 CQR56596.1 - 1.1e-08 34.0 0.1 2.7e-08 32.8 0.1 1.5 1 1 0 1 1 1 1 Methionine gamma-lyase Beta_elim_lyase PF01212.21 CQR56596.1 - 1.9e-06 27.4 0.0 6.4e-06 25.7 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 CQR56596.1 - 0.0077 15.3 0.0 0.079 11.9 0.0 2.0 2 0 0 2 2 2 1 L-seryl-tRNA selenium transferase FCD PF07729.12 CQR56597.1 - 6.9e-24 84.7 0.1 1.4e-23 83.7 0.1 1.5 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR56597.1 - 2e-16 59.3 0.2 5.1e-16 58.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 CQR56597.1 - 0.0049 16.4 0.1 0.027 14.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 CQR56597.1 - 0.0074 16.2 0.7 0.096 12.7 0.0 2.5 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR56597.1 - 0.071 13.0 0.4 0.17 11.7 0.4 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 CQR56597.1 - 0.091 12.5 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Acetyltransf_10 PF13673.7 CQR56598.1 - 2.7e-13 50.0 0.0 4.7e-13 49.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56598.1 - 8.8e-13 48.5 0.0 7.1e-12 45.6 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56598.1 - 9.9e-12 45.1 0.0 1.3e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 CQR56598.1 - 0.013 15.5 0.0 0.034 14.1 0.0 1.6 1 1 0 1 1 1 0 FR47-like protein DUF4821 PF16092.5 CQR56598.1 - 0.19 11.3 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) ADH_zinc_N_2 PF13602.6 CQR56599.1 - 2.1e-23 83.9 0.2 7.1e-13 49.8 0.0 2.5 1 1 1 2 2 2 2 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 CQR56599.1 - 4.4e-13 49.3 0.0 8e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 CQR56599.1 - 8.1e-07 28.9 0.0 3.1e-06 27.0 0.0 2.0 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 CQR56599.1 - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 CQR56599.1 - 0.028 14.8 0.0 0.05 14.1 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TPR_MalT PF17874.1 CQR56600.1 - 3.4e-61 207.5 20.9 6.3e-61 206.6 17.4 2.2 2 0 0 2 2 2 1 MalT-like TPR region GerE PF00196.19 CQR56600.1 - 1.3e-16 59.8 0.1 2.8e-16 58.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family AAA_16 PF13191.6 CQR56600.1 - 4.4e-05 23.9 0.1 4.4e-05 23.9 0.1 2.7 3 1 0 3 3 3 1 AAA ATPase domain AAA_25 PF13481.6 CQR56600.1 - 0.0064 16.1 0.3 0.037 13.6 0.1 2.4 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 CQR56600.1 - 0.0068 16.3 0.0 0.02 14.8 0.0 1.8 1 0 0 1 1 1 1 NACHT domain HTH_23 PF13384.6 CQR56600.1 - 0.012 15.4 0.5 0.12 12.2 0.0 3.0 2 1 1 3 3 3 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 CQR56600.1 - 0.023 14.4 0.2 0.17 11.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 TPR_12 PF13424.6 CQR56600.1 - 0.037 14.3 28.3 0.096 13.0 0.3 4.8 4 1 3 7 7 7 0 Tetratricopeptide repeat HTH_38 PF13936.6 CQR56600.1 - 0.047 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_1 PF00515.28 CQR56600.1 - 0.047 13.5 6.4 5.7 6.9 0.3 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat Sigma70_r4 PF04545.16 CQR56600.1 - 0.063 12.8 3.1 0.23 11.0 0.1 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_24 PF13412.6 CQR56600.1 - 0.16 11.6 0.5 0.39 10.3 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Peptidase_M56 PF05569.11 CQR56601.1 - 4.2e-47 160.8 0.1 7e-47 160.1 0.1 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 CobS PF02654.15 CQR56601.1 - 1.7 8.8 4.7 9 6.4 0.4 2.5 3 0 0 3 3 3 0 Cobalamin-5-phosphate synthase Penicillinase_R PF03965.16 CQR56602.1 - 2.1e-22 79.6 0.0 2.3e-22 79.5 0.0 1.0 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 CQR56602.1 - 0.0017 18.3 0.0 0.0053 16.7 0.0 1.9 2 1 0 2 2 2 1 MarR family TrmB PF01978.19 CQR56602.1 - 0.0073 16.2 0.0 0.019 14.8 0.0 1.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 CQR56602.1 - 0.019 14.8 0.3 6.8 6.6 0.1 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_20 PF12840.7 CQR56602.1 - 0.029 14.4 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SirA PF10747.9 CQR56602.1 - 0.062 13.6 0.3 0.098 13.0 0.3 1.3 1 0 0 1 1 1 0 Sporulation inhibitor of replication protein SirA Pex14_N PF04695.13 CQR56602.1 - 0.12 13.0 0.1 0.16 12.6 0.1 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region ABC_tran PF00005.27 CQR56603.1 - 3.6e-29 102.0 0.1 1e-28 100.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter ABC_membrane PF00664.23 CQR56603.1 - 5e-10 39.5 8.7 6.9e-10 39.0 8.7 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 CQR56603.1 - 9.3e-09 35.5 0.3 0.00037 20.4 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR56603.1 - 2.8e-05 23.7 0.6 0.076 12.4 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR56603.1 - 0.00055 19.7 6.5 0.0011 18.8 1.0 2.8 2 1 0 3 3 3 1 AAA ATPase domain RNA_helicase PF00910.22 CQR56603.1 - 0.0015 18.9 0.0 0.036 14.4 0.0 3.1 4 0 0 4 4 4 1 RNA helicase G-alpha PF00503.20 CQR56603.1 - 0.011 14.9 0.1 0.03 13.5 0.0 1.8 2 0 0 2 2 2 0 G-protein alpha subunit RsgA_GTPase PF03193.16 CQR56603.1 - 0.011 15.6 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 CQR56603.1 - 0.029 14.1 0.1 0.063 13.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 CQR56603.1 - 0.041 13.9 0.1 0.2 11.7 0.1 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR56603.1 - 0.057 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B TsaE PF02367.17 CQR56603.1 - 0.057 13.4 0.2 0.58 10.2 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 CQR56603.1 - 0.059 13.9 2.7 0.076 13.5 1.1 1.9 2 1 1 3 3 2 0 AAA domain AAA_22 PF13401.6 CQR56603.1 - 0.083 13.2 0.1 2.3 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 CQR56603.1 - 0.088 12.3 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 CQR56603.1 - 0.098 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR56603.1 - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 CQR56604.1 - 6.5e-24 85.0 0.0 1.7e-23 83.6 0.0 1.8 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56604.1 - 1.2e-05 25.3 0.7 0.0044 16.9 0.1 2.8 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR56604.1 - 0.00039 20.1 0.1 0.00097 18.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR56604.1 - 0.0018 18.0 0.2 0.0018 18.0 0.2 2.2 3 0 0 3 3 3 1 AAA ATPase domain AAA_23 PF13476.6 CQR56604.1 - 0.0037 17.8 0.9 0.015 15.8 0.1 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 CQR56604.1 - 0.0047 16.4 1.4 0.073 12.5 1.4 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR56604.1 - 0.0065 16.9 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 CQR56604.1 - 0.014 14.8 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 CQR56604.1 - 0.018 14.3 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 CQR56604.1 - 0.018 15.0 0.0 0.042 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 CQR56604.1 - 0.026 14.3 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 CQR56604.1 - 0.027 14.7 0.1 0.086 13.1 0.1 1.8 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR56604.1 - 0.029 14.3 0.0 0.087 12.7 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase RNA_helicase PF00910.22 CQR56604.1 - 0.052 13.9 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase IKKbetaNEMObind PF12179.8 CQR56604.1 - 0.06 13.4 0.1 0.2 11.7 0.1 1.8 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain MMR_HSR1 PF01926.23 CQR56604.1 - 0.075 13.1 0.2 0.16 12.0 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 CQR56604.1 - 0.078 12.9 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 CQR56604.1 - 0.15 11.6 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 CQR56604.1 - 0.15 12.4 0.1 0.5 10.8 0.0 2.0 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 CQR56604.1 - 0.2 11.8 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Lustrin_cystein PF14625.6 CQR56605.1 - 0.079 13.3 8.0 0.34 11.3 8.0 1.9 1 1 0 1 1 1 0 Lustrin, cysteine-rich repeated domain Radical_SAM PF04055.21 CQR56606.1 - 4.3e-19 69.5 0.0 1.1e-18 68.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR56606.1 - 5.5e-09 36.4 0.1 1.4e-08 35.1 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR56606.1 - 7.4e-07 29.3 0.1 2.5e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 CQR56606.1 - 3.3e-06 27.5 0.2 8.2e-06 26.2 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain PqqD PF05402.12 CQR56607.1 - 7.7e-09 35.7 0.1 9.8e-09 35.4 0.1 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Pneumo_NS1 PF03438.13 CQR56607.1 - 0.017 15.3 0.1 0.02 15.0 0.1 1.1 1 0 0 1 1 1 0 Pneumovirus NS1 protein HrcA PF01628.21 CQR56607.1 - 0.11 12.4 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 HrcA protein C terminal domain AgrD PF05931.11 CQR56608.1 - 0.0025 17.8 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal AgrD protein AgrB PF04647.15 CQR56609.1 - 3.4e-20 72.1 11.3 4.1e-20 71.8 11.3 1.1 1 0 0 1 1 1 1 Accessory gene regulator B DUF1072 PF06380.11 CQR56609.1 - 7.6 6.5 10.6 0.65 9.9 1.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) Response_reg PF00072.24 CQR56610.1 - 1e-14 54.6 0.0 1.9e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain LytTR PF04397.15 CQR56610.1 - 1.7e-14 53.8 0.3 3.1e-14 53.0 0.3 1.5 1 0 0 1 1 1 1 LytTr DNA-binding domain HATPase_c_5 PF14501.6 CQR56611.1 - 1.3e-28 98.8 0.1 3.6e-28 97.4 0.1 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c PF02518.26 CQR56611.1 - 5.6e-05 23.6 1.0 0.00029 21.3 1.0 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Isochorismatase PF00857.20 CQR56612.1 - 1.6e-20 74.0 1.0 2.2e-20 73.6 1.0 1.2 1 0 0 1 1 1 1 Isochorismatase family Enterotoxin_b PF01376.18 CQR56612.1 - 0.093 12.9 0.1 0.17 12.1 0.1 1.6 1 1 0 1 1 1 0 Heat-labile enterotoxin beta chain BetaGal_dom3 PF13363.6 CQR56612.1 - 0.093 12.3 0.2 0.18 11.4 0.2 1.4 1 0 0 1 1 1 0 Beta-galactosidase, domain 3 Cu_amine_oxidN1 PF07833.11 CQR56613.1 - 1.7e-08 34.8 0.0 1e-07 32.4 0.0 2.2 1 1 1 2 2 2 1 Copper amine oxidase N-terminal domain DUF664 PF04978.12 CQR56614.1 - 4.9e-05 23.8 0.3 6.2e-05 23.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF664) DinB PF05163.12 CQR56614.1 - 0.00032 20.7 0.4 0.0006 19.8 0.4 1.4 1 1 0 1 1 1 1 DinB family DinB_2 PF12867.7 CQR56614.1 - 0.055 14.0 0.3 0.13 12.8 0.1 1.5 1 1 0 1 1 1 0 DinB superfamily Lipase_3 PF01764.25 CQR56615.1 - 8.5e-29 100.2 0.0 1.1e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_6 PF12697.7 CQR56615.1 - 0.00013 22.7 0.0 0.00016 22.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF2974 PF11187.8 CQR56615.1 - 0.00033 20.3 0.0 0.00075 19.1 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2974) Hydrolase_4 PF12146.8 CQR56615.1 - 0.11 11.7 0.1 0.22 10.8 0.1 1.5 1 1 0 1 1 1 0 Serine aminopeptidase, S33 DUF676 PF05057.14 CQR56615.1 - 0.13 11.7 0.1 0.31 10.5 0.1 1.6 1 1 0 1 1 1 0 Putative serine esterase (DUF676) DJ-1_PfpI PF01965.24 CQR56616.1 - 3.6e-34 117.9 0.0 4.2e-34 117.7 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family CobT_C PF11775.8 CQR56617.1 - 0.00041 20.1 0.1 0.00072 19.3 0.1 1.5 1 1 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain VWA_2 PF13519.6 CQR56617.1 - 0.03 15.0 0.1 0.14 12.8 0.0 2.1 1 1 1 2 2 2 0 von Willebrand factor type A domain AAA_5 PF07728.14 CQR56618.1 - 9.8e-11 41.8 0.0 1e-05 25.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 CQR56618.1 - 6.1e-06 26.1 0.0 0.00013 21.8 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 CQR56618.1 - 5.3e-05 22.3 0.1 0.27 10.1 0.0 2.2 2 0 0 2 2 2 2 Hydrolytic ATP binding site of dynein motor region TsaE PF02367.17 CQR56618.1 - 0.00032 20.7 0.0 0.0018 18.3 0.0 2.0 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 CQR56618.1 - 0.00035 21.0 0.0 0.0099 16.3 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 CQR56618.1 - 0.0007 20.1 0.0 0.0018 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR56618.1 - 0.0022 18.4 0.0 0.0058 17.0 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 CQR56618.1 - 0.0033 17.7 0.0 0.011 16.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.12 CQR56618.1 - 0.0037 17.0 0.0 0.0091 15.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 CQR56618.1 - 0.0057 15.9 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain NACHT PF05729.12 CQR56618.1 - 0.0083 16.1 0.0 0.024 14.6 0.0 1.8 1 0 0 1 1 1 1 NACHT domain PduV-EutP PF10662.9 CQR56618.1 - 0.056 13.2 0.0 0.27 11.0 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IPT PF01745.16 CQR56618.1 - 0.076 12.4 0.1 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase Mg_chelatase PF01078.21 CQR56618.1 - 0.094 12.1 0.1 0.26 10.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PhoH PF02562.16 CQR56618.1 - 0.11 12.0 0.0 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activat PF00158.26 CQR56618.1 - 0.11 12.2 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Cytidylate_kin2 PF13189.6 CQR56618.1 - 0.11 12.6 0.0 0.37 10.9 0.0 1.9 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA_33 PF13671.6 CQR56618.1 - 0.12 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR56618.1 - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Beta-lactamase PF00144.24 CQR56620.1 - 2.3e-61 207.9 0.1 3.6e-61 207.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase SLH PF00395.20 CQR56620.1 - 2.7e-22 78.5 0.1 1.6e-10 40.8 0.0 3.6 3 0 0 3 3 3 2 S-layer homology domain Beta-lactamase2 PF13354.6 CQR56620.1 - 0.064 12.9 0.0 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Beta-lactamase enzyme family DPPIV_rep PF18811.1 CQR56620.1 - 0.21 11.6 3.2 0.52 10.3 3.2 1.7 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) low complexity region CBM_21 PF03370.13 CQR56621.1 - 3.2e-32 111.1 11.9 5.1e-18 65.3 3.0 2.1 2 0 0 2 2 2 2 Carbohydrate/starch-binding module (family 21) CBM53 PF16760.5 CQR56621.1 - 1.3e-15 57.8 18.3 2.3e-10 40.9 6.7 2.3 2 0 0 2 2 2 2 Starch/carbohydrate-binding module (family 53) DUF1344 PF07076.11 CQR56621.1 - 0.047 13.6 0.2 7.2 6.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) CHB_HEX_C_1 PF13290.6 CQR56621.1 - 0.29 11.2 8.4 4.4 7.4 0.4 3.0 2 1 0 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 CQR56621.1 - 3.1 8.0 8.4 0.56 10.4 0.7 2.9 2 1 0 2 2 2 0 Fn3 associated T4SS-DNA_transf PF02534.14 CQR56622.1 - 0.079 11.7 0.3 0.4 9.4 0.3 1.8 1 1 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer ABC2_membrane PF01061.24 CQR56623.1 - 1.6e-35 122.4 13.8 1.6e-35 122.4 13.8 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR56623.1 - 8.2e-16 58.0 18.0 1.4e-15 57.3 18.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 CQR56624.1 - 1e-28 100.6 0.0 2.6e-28 99.3 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR56624.1 - 5.4e-14 52.7 0.2 5e-09 36.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 CQR56624.1 - 1.9e-06 28.5 0.0 3.9e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 CQR56624.1 - 0.00025 21.5 0.2 0.00074 19.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR56624.1 - 0.0016 18.7 0.1 0.0077 16.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR56624.1 - 0.0018 18.1 0.0 1.4 8.5 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 CQR56624.1 - 0.018 14.7 0.1 0.037 13.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 CQR56624.1 - 0.019 14.4 0.0 4.5 6.7 0.0 2.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR56624.1 - 0.02 15.4 0.1 0.037 14.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 CQR56624.1 - 0.021 14.4 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 CQR56624.1 - 0.025 15.0 0.1 0.25 11.7 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 CQR56624.1 - 0.036 13.8 2.1 0.066 12.9 0.5 2.3 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 CQR56624.1 - 0.062 13.0 0.1 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR56624.1 - 0.074 13.2 0.3 0.44 10.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR56624.1 - 0.082 13.1 0.0 0.34 11.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Cob_adeno_trans PF01923.18 CQR56624.1 - 0.098 12.8 0.1 0.2 11.8 0.1 1.6 1 0 0 1 1 1 0 Cobalamin adenosyltransferase AAA_27 PF13514.6 CQR56624.1 - 0.12 11.9 0.4 0.35 10.4 0.0 1.9 3 0 0 3 3 3 0 AAA domain MarR_2 PF12802.7 CQR56625.1 - 3.4e-06 26.8 0.0 7.5e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR56625.1 - 0.00098 19.0 0.1 0.0022 17.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 CQR56625.1 - 0.016 15.7 0.0 0.036 14.6 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 CQR56625.1 - 0.063 13.3 0.1 0.11 12.5 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain BacA PF02673.18 CQR56627.1 - 5.3e-80 268.8 14.0 6e-80 268.6 14.0 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA LapA_dom PF06305.11 CQR56627.1 - 1.6 8.6 12.0 16 5.4 0.0 3.7 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain Methyltransf_11 PF08241.12 CQR56628.1 - 7.5e-15 55.4 0.0 3e-14 53.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR56628.1 - 8.4e-14 51.7 0.0 1.1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR56628.1 - 4.3e-13 49.8 0.0 8.8e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56628.1 - 3.3e-10 39.9 0.0 5.1e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR56628.1 - 4.7e-10 40.1 0.0 9.9e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 CQR56628.1 - 1.3e-05 24.6 0.0 2.7e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 CQR56628.1 - 0.012 15.0 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 CQR56628.1 - 0.035 13.0 0.0 0.045 12.7 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.17 CQR56628.1 - 0.092 12.2 0.1 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase MetW PF07021.12 CQR56628.1 - 0.13 11.8 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PQQ_3 PF13570.6 CQR56629.1 - 1.7e-08 34.7 13.6 0.063 13.8 0.4 8.6 8 0 0 8 8 8 2 PQQ-like domain DUF5074 PF16819.5 CQR56629.1 - 2.1e-05 24.5 0.1 3.1 7.9 0.0 4.9 3 1 1 4 4 4 2 Domain of unknown function (DUF5074) Reg_prop PF07494.11 CQR56629.1 - 0.00011 21.9 0.3 0.47 10.8 0.0 5.5 6 0 0 6 6 6 1 Two component regulator propeller CBM_4_9 PF02018.17 CQR56629.1 - 0.00026 21.3 0.2 0.0011 19.3 0.1 2.2 1 1 1 2 2 2 1 Carbohydrate binding domain SGL PF08450.12 CQR56629.1 - 0.00065 19.4 0.4 0.035 13.7 0.0 3.7 4 2 2 6 6 6 1 SMP-30/Gluconolactonase/LRE-like region DUF5050 PF16472.5 CQR56629.1 - 0.0019 17.5 1.8 0.51 9.5 0.6 3.1 2 1 0 2 2 2 2 Domain of unknown function (DUF5050) PQQ PF01011.21 CQR56629.1 - 0.061 13.3 11.7 32 4.7 0.1 6.8 7 1 1 8 8 8 0 PQQ enzyme repeat DUF1344 PF07076.11 CQR56629.1 - 0.08 12.9 0.0 0.3 11.0 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) ADH_zinc_N PF00107.26 CQR56630.1 - 2.1e-09 37.4 0.1 5.6e-09 36.1 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 CQR56630.1 - 6.5e-08 33.7 0.0 1.7e-07 32.4 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 CQR56630.1 - 4.6e-05 23.3 0.1 0.00041 20.2 0.1 2.1 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain 2-Hacid_dh_C PF02826.19 CQR56630.1 - 0.0036 16.7 0.0 0.0078 15.6 0.0 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 CQR56630.1 - 0.069 13.0 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BPD_transp_1 PF00528.22 CQR56631.1 - 4.3e-12 46.1 11.1 4.3e-12 46.1 11.1 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR56632.1 - 2.6e-14 53.4 11.0 2.6e-14 53.4 11.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2484 PF10658.9 CQR56632.1 - 0.042 14.1 0.2 0.042 14.1 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) MNHE PF01899.16 CQR56632.1 - 0.071 12.9 1.2 0.22 11.3 1.2 1.8 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit DUF373 PF04123.13 CQR56632.1 - 0.089 12.2 0.2 0.089 12.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF373) SBP_bac_1 PF01547.25 CQR56633.1 - 1.2e-21 78.0 20.4 1.6e-21 77.6 19.1 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR56633.1 - 2.8e-20 73.3 10.7 4.6e-20 72.6 10.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR56633.1 - 0.037 13.8 0.1 0.28 10.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR56634.1 - 6.1e-18 65.6 0.0 9e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR56634.1 - 1.4e-15 58.1 0.0 2.1e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GntR PF00392.21 CQR56634.1 - 1.1e-14 53.8 0.0 2.9e-14 52.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family SBP_bac_11 PF13531.6 CQR56634.1 - 5.7e-07 29.5 0.0 0.036 13.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR56634.1 - 0.00052 19.5 0.0 0.038 13.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 CQR56634.1 - 0.039 13.3 0.0 0.24 10.7 0.0 2.2 3 0 0 3 3 3 0 LysR substrate binding domain TBPIP PF07106.13 CQR56634.1 - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain B-block_TFIIIC PF04182.12 CQR56634.1 - 0.14 12.3 0.1 0.73 10.0 0.0 2.0 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC FtsX PF02687.21 CQR56635.1 - 3.4e-05 24.2 11.8 3.4e-05 24.2 11.8 5.7 5 1 0 5 5 5 2 FtsX-like permease family ABC_tran PF00005.27 CQR56636.1 - 6.5e-32 110.9 0.1 9.6e-32 110.4 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56636.1 - 0.00016 21.6 0.2 0.037 13.8 0.2 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR56636.1 - 0.00021 21.2 0.1 0.00044 20.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR56636.1 - 0.00082 19.8 0.3 0.0018 18.7 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 CQR56636.1 - 0.00097 19.4 0.2 0.0028 17.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 CQR56636.1 - 0.0051 16.6 0.0 0.0085 15.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 CQR56636.1 - 0.0055 16.8 0.5 0.014 15.5 0.5 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.19 CQR56636.1 - 0.0062 16.0 2.1 0.54 9.7 2.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR56636.1 - 0.0068 16.1 0.2 0.013 15.2 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 CQR56636.1 - 0.0096 16.4 0.5 0.16 12.4 0.5 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 CQR56636.1 - 0.012 15.2 0.1 0.33 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR56636.1 - 0.015 15.0 0.5 0.044 13.5 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR56636.1 - 0.017 15.7 0.2 0.032 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 CQR56636.1 - 0.018 14.1 0.2 0.04 13.0 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 CQR56636.1 - 0.02 14.3 0.2 0.19 11.1 0.1 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 CQR56636.1 - 0.031 14.5 0.1 0.24 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 CQR56636.1 - 0.038 14.2 0.1 0.65 10.2 0.1 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_13 PF13166.6 CQR56636.1 - 0.054 12.2 0.7 0.094 11.4 0.7 1.4 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 CQR56636.1 - 0.061 13.4 0.2 4.7 7.2 0.1 2.3 2 0 0 2 2 2 0 Dynamin family AAA_23 PF13476.6 CQR56636.1 - 0.066 13.7 0.1 0.066 13.7 0.1 1.8 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 CQR56636.1 - 0.077 12.9 0.2 0.21 11.4 0.2 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 CQR56636.1 - 0.079 12.5 0.1 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 CQR56636.1 - 0.082 12.8 0.2 0.2 11.5 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 CQR56636.1 - 0.094 11.9 0.1 0.18 11.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain HATPase_c PF02518.26 CQR56637.1 - 1.5e-17 64.1 0.0 2.4e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR56637.1 - 0.00012 22.1 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 CQR56637.1 - 0.0026 17.8 0.2 0.0078 16.2 0.1 1.8 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF3810 PF12725.7 CQR56637.1 - 0.078 12.3 0.3 0.11 11.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) HATPase_c_3 PF13589.6 CQR56637.1 - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trans_reg_C PF00486.28 CQR56638.1 - 9e-22 77.0 0.3 1.8e-21 76.0 0.3 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR56638.1 - 4.4e-21 75.1 0.0 7.1e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain SPATA1_C PF15743.5 CQR56638.1 - 0.017 15.2 0.8 0.029 14.4 0.8 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated C-terminus ThiG PF05690.14 CQR56638.1 - 0.14 11.4 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Sulfatase PF00884.23 CQR56640.1 - 2.5e-43 148.6 0.1 3.5e-43 148.2 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 CQR56640.1 - 0.063 12.8 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase TssO PF17561.2 CQR56640.1 - 0.13 12.4 2.5 3.6 7.7 0.1 2.6 2 0 0 2 2 2 0 Type VI secretion system, TssO Metalloenzyme PF01676.18 CQR56640.1 - 0.22 10.9 0.0 0.4 10.0 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily DUF2064 PF09837.9 CQR56641.1 - 1.3e-05 25.0 1.8 13 5.7 0.0 5.4 5 0 0 5 5 5 2 Uncharacterized protein conserved in bacteria (DUF2064) PQQ_3 PF13570.6 CQR56641.1 - 0.0045 17.4 26.0 0.12 12.9 0.1 5.9 7 0 0 7 7 7 3 PQQ-like domain DUF5122 PF17164.4 CQR56641.1 - 0.14 12.4 25.6 0.3 11.4 0.6 5.8 7 0 0 7 7 7 0 Domain of unknown function (DUF5122) beta-propeller RHS PF03527.14 CQR56641.1 - 4.5 7.1 4.9 64 3.4 0.2 3.4 3 0 0 3 3 3 0 RHS protein Sortilin-Vps10 PF15902.5 CQR56642.1 - 4.6e-12 45.5 2.7 1.1e-08 34.3 0.1 3.0 1 1 3 4 4 4 2 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 CQR56642.1 - 1.6e-09 37.5 4.6 0.00017 21.0 0.8 2.9 1 1 1 2 2 2 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 CQR56642.1 - 2.8e-07 29.5 23.3 0.32 11.1 0.2 6.3 6 0 0 6 6 6 4 BNR/Asp-box repeat BNR_2 PF13088.6 CQR56642.1 - 8.1e-07 28.6 0.2 0.00016 21.1 0.0 2.8 2 1 1 3 3 3 2 BNR repeat-like domain BNR_6 PF15899.5 CQR56642.1 - 0.04 14.0 4.0 0.36 11.0 0.0 3.8 4 0 0 4 4 4 0 BNR-Asp box repeat DUF3269 PF11673.8 CQR56642.1 - 0.085 13.2 0.1 0.17 12.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3269) Mo-co_dimer PF03404.16 CQR56642.1 - 0.28 11.2 4.6 1.8 8.6 0.1 3.3 3 1 1 4 4 4 0 Mo-co oxidoreductase dimerisation domain LMWPc PF01451.21 CQR56644.1 - 0.023 15.1 0.0 0.039 14.3 0.0 1.3 1 0 0 1 1 1 0 Low molecular weight phosphotyrosine protein phosphatase FG-GAP PF01839.23 CQR56644.1 - 0.026 14.6 0.3 0.075 13.2 0.3 1.8 1 0 0 1 1 1 0 FG-GAP repeat VCBS PF13517.6 CQR56644.1 - 0.029 15.0 2.2 0.076 13.6 1.5 2.1 2 1 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella adh_short_C2 PF13561.6 CQR56645.1 - 1.1e-65 221.5 4.4 1.3e-65 221.2 4.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR56645.1 - 1.7e-52 177.7 2.7 2.3e-52 177.3 2.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR56645.1 - 9.7e-16 58.2 1.3 1.4e-15 57.7 1.3 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 CQR56645.1 - 0.00042 19.8 0.0 0.00059 19.3 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) F420_oxidored PF03807.17 CQR56645.1 - 0.0013 19.3 1.1 0.0038 17.8 0.4 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 CQR56645.1 - 0.0026 17.3 0.7 0.0078 15.7 0.7 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR56645.1 - 0.012 15.5 4.1 0.013 15.4 2.6 1.7 1 1 0 2 2 2 0 NAD(P)H-binding ADH_zinc_N PF00107.26 CQR56645.1 - 0.016 15.2 0.7 0.039 13.9 0.7 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 CQR56645.1 - 0.022 14.7 0.3 0.037 13.9 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR56645.1 - 0.047 13.9 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain GDP_Man_Dehyd PF16363.5 CQR56645.1 - 0.05 13.0 0.4 0.077 12.4 0.0 1.4 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase SBP_bac_5 PF00496.22 CQR56645.1 - 0.16 10.9 0.0 0.19 10.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Isochorismatase PF00857.20 CQR56646.1 - 7.5e-39 133.7 0.0 8.5e-39 133.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family MFS_1 PF07690.16 CQR56647.1 - 1.7e-49 168.6 47.6 5.1e-28 98.0 23.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR56647.1 - 4.9e-14 52.1 33.2 9.4e-09 34.6 9.6 3.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR56647.1 - 1e-11 44.3 24.2 2.7e-08 33.1 10.5 3.1 1 1 2 3 3 3 3 MFS_1 like family MFS_3 PF05977.13 CQR56647.1 - 9e-10 37.6 27.7 7.2e-08 31.3 10.7 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector LacY_symp PF01306.19 CQR56647.1 - 7.1e-05 21.7 18.1 0.0033 16.3 1.7 3.3 2 2 0 3 3 3 2 LacY proton/sugar symporter BT1 PF03092.16 CQR56647.1 - 0.017 13.4 9.4 0.11 10.7 1.1 2.8 2 1 1 3 3 3 0 BT1 family UPF0227 PF05728.12 CQR56647.1 - 1.5 8.7 3.3 21 5.0 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) HTH_AraC PF00165.23 CQR56648.1 - 1.6e-23 82.3 0.2 3.8e-10 39.6 0.0 3.1 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR56648.1 - 1.3e-20 73.5 0.0 2.4e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR56648.1 - 1e-08 35.1 0.2 1e-08 35.1 0.2 1.9 2 1 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR56648.1 - 1.8e-06 27.6 0.0 3.5e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.22 CQR56648.1 - 0.15 12.1 0.2 0.66 10.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix DinB_2 PF12867.7 CQR56650.1 - 4.4e-10 40.2 2.2 6.4e-10 39.6 2.2 1.2 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR56650.1 - 1.8e-09 38.1 0.5 2.5e-09 37.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF664) DUF1572 PF07609.11 CQR56650.1 - 2.3e-07 30.8 0.1 0.011 15.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1572) DinB PF05163.12 CQR56650.1 - 9.3e-06 25.7 0.9 1.1e-05 25.4 0.9 1.1 1 0 0 1 1 1 1 DinB family GyrI-like PF06445.15 CQR56651.1 - 1.1e-25 90.8 0.1 1.4e-25 90.4 0.1 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 CQR56651.1 - 1.4e-18 67.5 0.0 2.6e-18 66.6 0.0 1.4 1 0 0 1 1 1 1 Integron-associated effector binding protein HTH_18 PF12833.7 CQR56651.1 - 6.7e-16 58.3 0.6 1e-15 57.8 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56651.1 - 1.1e-09 38.1 0.1 3.2e-07 30.3 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family LysE PF01810.18 CQR56652.1 - 7.9e-13 48.3 16.0 1e-12 47.9 16.0 1.1 1 0 0 1 1 1 1 LysE type translocator UPF0715 PF17094.5 CQR56652.1 - 2.8 8.5 17.3 0.053 14.1 7.4 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0715) HTH_18 PF12833.7 CQR56653.1 - 1.2e-15 57.6 0.2 1.9e-15 56.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR56653.1 - 6.3e-15 55.3 0.0 1.2e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_AraC PF00165.23 CQR56653.1 - 1.3e-10 41.1 0.3 4.5e-06 26.6 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Bactofilin PF04519.13 CQR56655.1 - 1.1e-07 32.0 0.3 6.2e-07 29.6 0.3 2.1 1 1 1 2 2 2 1 Polymer-forming cytoskeletal LPAM_2 PF13627.6 CQR56655.1 - 0.21 11.5 2.9 0.39 10.6 2.9 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Polysacc_deac_1 PF01522.21 CQR56656.1 - 1.8e-25 89.2 0.0 3e-25 88.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase ABC_tran PF00005.27 CQR56658.1 - 1e-33 116.7 0.0 3.4e-33 115.1 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR56658.1 - 1.4e-09 38.2 0.1 5.7e-05 23.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR56658.1 - 0.0039 16.9 0.0 0.021 14.6 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR56658.1 - 0.0048 16.6 0.0 0.0099 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR56658.1 - 0.0078 16.7 0.9 0.019 15.5 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 CQR56658.1 - 0.016 14.9 0.1 0.26 11.0 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 CQR56658.1 - 0.022 14.5 0.1 0.52 10.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 CQR56658.1 - 0.029 14.7 0.1 0.26 11.6 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 CQR56658.1 - 0.068 13.6 0.2 0.13 12.7 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 CQR56658.1 - 0.095 11.9 0.9 0.26 10.4 0.3 2.1 2 1 0 2 2 2 0 NB-ARC domain SMC_N PF02463.19 CQR56658.1 - 0.25 10.7 0.2 3.4 7.1 0.1 2.4 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain RVT_1 PF00078.27 CQR56659.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR56659.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR56659.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase Amidohydro_2 PF04909.14 CQR56660.1 - 9.1e-32 111.0 0.3 1.1e-31 110.8 0.3 1.0 1 0 0 1 1 1 1 Amidohydrolase Abhydrolase_3 PF07859.13 CQR56661.1 - 1.2e-62 211.5 0.0 1.7e-62 211.0 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR56661.1 - 0.00032 20.2 0.0 0.00058 19.4 0.0 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.28 CQR56661.1 - 0.00058 18.9 0.1 0.0026 16.7 0.0 1.8 2 0 0 2 2 2 1 Carboxylesterase family DLH PF01738.18 CQR56661.1 - 0.006 16.2 0.0 0.014 14.9 0.0 1.6 2 0 0 2 2 2 1 Dienelactone hydrolase family MarR_2 PF12802.7 CQR56662.1 - 5.3e-12 45.4 0.0 1e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR56662.1 - 1.6e-11 43.9 0.3 4.5e-11 42.5 0.1 1.8 1 1 1 2 2 2 1 MarR family HTH_27 PF13463.6 CQR56662.1 - 2.2e-09 37.6 0.1 5.9e-09 36.3 0.1 1.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR56662.1 - 5e-06 26.0 0.1 1e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 CQR56662.1 - 0.00062 19.6 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 CQR56662.1 - 0.0027 17.5 0.0 0.0049 16.7 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.6 CQR56662.1 - 0.0037 17.2 0.1 0.0077 16.2 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 CQR56662.1 - 0.0045 16.4 0.3 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpc34 subunit Replic_Relax PF13814.6 CQR56662.1 - 0.016 15.3 0.1 0.023 14.8 0.1 1.3 1 1 0 1 1 1 0 Replication-relaxation B-block_TFIIIC PF04182.12 CQR56662.1 - 0.025 14.7 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 CQR56662.1 - 0.029 14.6 0.1 0.049 13.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.6 CQR56662.1 - 0.06 13.1 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 CQR56662.1 - 0.071 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain PadR PF03551.14 CQR56662.1 - 0.079 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 CQR56662.1 - 0.13 12.1 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain TetR_C_8 PF14278.6 CQR56663.1 - 1.1e-15 57.6 0.0 3.3e-15 56.0 0.0 1.8 3 0 0 3 3 3 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR56663.1 - 2.3e-06 27.3 0.0 4.2e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family adh_short PF00106.25 CQR56664.1 - 5.7e-50 169.5 0.9 7.4e-50 169.1 0.9 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR56664.1 - 5.8e-37 127.5 0.5 8.3e-37 127.0 0.5 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR56664.1 - 1.2e-09 38.3 1.6 5.3e-09 36.2 1.0 1.9 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 CQR56664.1 - 5.1e-08 32.7 0.6 7.8e-07 28.8 0.6 2.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 CQR56664.1 - 0.00034 19.8 0.1 0.0005 19.3 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 CQR56664.1 - 0.00053 19.9 1.7 0.0041 17.0 1.5 2.5 2 1 0 2 2 2 1 NAD(P)H-binding F420_oxidored PF03807.17 CQR56664.1 - 0.0094 16.5 0.3 0.055 14.1 0.1 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 CQR56664.1 - 0.013 14.8 0.2 0.049 13.0 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 CQR56664.1 - 0.015 15.0 0.3 0.079 12.6 0.1 2.3 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 CQR56664.1 - 0.021 14.4 0.5 2.2 7.8 0.3 2.6 2 1 0 2 2 2 0 NmrA-like family Arteri_nsp7a PF16749.5 CQR56664.1 - 0.034 14.3 0.1 0.068 13.4 0.1 1.5 1 0 0 1 1 1 0 Arterivirus nonstructural protein 7 alpha Wax2_C PF12076.8 CQR56664.1 - 0.044 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 WAX2 C-terminal domain 3HCDH_N PF02737.18 CQR56664.1 - 0.046 13.6 0.1 0.083 12.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 CQR56664.1 - 0.048 13.0 0.1 0.15 11.4 0.1 1.8 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 CQR56664.1 - 0.077 13.1 0.1 0.23 11.5 0.1 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Cas_Cas02710 PF09670.10 CQR56664.1 - 0.14 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) GDP_Man_Dehyd PF16363.5 CQR56664.1 - 0.15 11.5 0.2 0.23 10.8 0.2 1.6 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 CQR56664.1 - 0.15 11.1 0.4 0.32 10.0 0.1 1.8 2 0 0 2 2 2 0 RmlD substrate binding domain Bactofilin PF04519.13 CQR56666.1 - 4.8e-13 49.2 70.9 0.051 13.9 0.5 12.2 12 1 0 12 12 12 8 Polymer-forming cytoskeletal Peptidase_S74 PF13884.6 CQR56666.1 - 2.2e-10 40.7 0.0 4.2e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Chaperone of endosialidase DUF3672 PF12421.8 CQR56666.1 - 1.6e-05 24.8 20.4 0.014 15.3 0.3 6.9 5 1 1 6 6 6 3 Fibronectin type III protein SCP2 PF02036.17 CQR56666.1 - 0.00019 21.9 7.4 3.5 8.2 0.0 7.0 5 2 2 7 7 7 2 SCP-2 sterol transfer family DUF3024 PF11225.8 CQR56666.1 - 0.0005 20.3 21.5 1.3 9.4 0.1 9.5 10 0 0 10 10 10 1 Protein of unknown function (DUF3024) Bile_Hydr_Trans PF04775.14 CQR56666.1 - 0.14 12.3 0.9 2 8.5 0.0 3.5 3 0 0 3 3 3 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region SlyX PF04102.12 CQR56666.1 - 0.55 10.9 2.2 1 10.0 2.2 1.4 1 0 0 1 1 1 0 SlyX Flagellin_C PF00700.21 CQR56667.1 - 0.0024 18.2 0.3 0.0085 16.4 0.1 1.8 1 1 1 2 2 2 1 Bacterial flagellin C-terminal helical region DUF494 PF04361.13 CQR56667.1 - 0.045 13.6 0.1 0.049 13.5 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF494) Macoilin PF09726.9 CQR56667.1 - 0.064 11.8 0.6 0.064 11.8 0.6 1.0 1 0 0 1 1 1 0 Macoilin family M PF02370.16 CQR56667.1 - 0.11 13.1 3.7 0.62 10.8 1.5 2.7 3 0 0 3 3 3 0 M protein repeat Peptidase_S74 PF13884.6 CQR56668.1 - 1.2e-07 31.9 0.0 2.7e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Chaperone of endosialidase Bactofilin PF04519.13 CQR56668.1 - 0.18 12.1 0.4 38 4.7 0.0 3.5 3 0 0 3 3 3 0 Polymer-forming cytoskeletal Tail_P2_I PF09684.10 CQR56669.1 - 1.6e-07 31.3 0.0 0.0045 16.9 0.0 2.2 2 0 0 2 2 2 2 Phage tail protein (Tail_P2_I) Baseplate_J PF04865.14 CQR56670.1 - 0.004 16.3 0.0 0.0056 15.9 0.0 1.1 1 0 0 1 1 1 1 Baseplate J-like protein Baseplate_J PF04865.14 CQR56671.1 - 9.7e-14 51.1 0.1 1.2e-10 41.0 0.1 2.2 2 0 0 2 2 2 2 Baseplate J-like protein GPW_gp25 PF04965.14 CQR56672.1 - 1.1e-25 89.1 0.1 1.3e-25 88.9 0.1 1.0 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.8 CQR56672.1 - 4.1e-05 23.6 0.0 5.3e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) PAAR_motif PF05488.13 CQR56673.1 - 8.2e-13 48.3 14.1 5.1e-08 33.0 5.8 3.0 1 1 1 2 2 2 2 PAAR motif DUF4150 PF13665.6 CQR56673.1 - 1.5e-07 31.5 1.5 2.5e-07 30.8 1.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4150) Bac_luciferase PF00296.20 CQR56673.1 - 0.16 11.4 0.1 0.19 11.1 0.1 1.2 1 0 0 1 1 1 0 Luciferase-like monooxygenase Phage_base_V PF04717.12 CQR56674.1 - 8.1e-05 22.5 0.0 0.00023 21.0 0.0 1.7 1 1 1 2 2 2 1 Type VI secretion system, phage-baseplate injector Sarcoglycan_1 PF04790.13 CQR56674.1 - 0.00031 20.2 1.3 0.00064 19.2 0.7 1.7 1 1 1 2 2 2 1 Sarcoglycan complex subunit protein DUF2345 PF10106.9 CQR56674.1 - 0.00068 19.5 5.0 0.0042 17.0 4.9 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2345) Phage_GPD PF05954.11 CQR56675.1 - 7.6e-08 32.0 0.0 1.2e-07 31.4 0.0 1.3 1 1 0 1 1 1 1 Phage late control gene D protein (GPD) DBP10CT PF08147.12 CQR56675.1 - 0.055 13.7 0.5 0.14 12.4 0.5 1.7 1 0 0 1 1 1 0 DBP10CT (NUC160) domain LysM PF01476.20 CQR56676.1 - 0.00067 19.7 0.0 0.0045 17.0 0.0 2.3 2 1 0 2 2 2 1 LysM domain DUF5305 PF17231.2 CQR56676.1 - 0.048 13.1 0.1 0.38 10.1 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5305) Phage_T4_gp19 PF06841.12 CQR56678.1 - 8.6e-43 145.4 0.0 9.8e-43 145.2 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Phage_TAC_7 PF10109.9 CQR56679.1 - 0.085 13.0 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 Phage_T4_gp19 PF06841.12 CQR56680.1 - 3.9e-40 136.8 0.0 4.4e-40 136.6 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Phage_sheath_1C PF17482.2 CQR56681.1 - 3.9e-17 62.1 0.0 9.6e-17 60.9 0.0 1.7 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Phage_sheath_1 PF04984.14 CQR56681.1 - 6.1e-16 58.7 0.0 9.6e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1N PF17481.2 CQR56681.1 - 0.06 13.8 0.1 0.19 12.3 0.0 1.9 2 0 0 2 2 2 0 Phage tail sheath protein beta-sandwich domain DUF4255 PF14065.6 CQR56682.1 - 8.5e-35 120.0 0.0 1e-34 119.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) AAA PF00004.29 CQR56683.1 - 2.9e-31 108.6 0.0 1.7e-29 102.9 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 CQR56683.1 - 5.3e-05 23.0 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 CQR56683.1 - 0.00036 20.6 0.0 0.0011 19.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 CQR56683.1 - 0.0027 18.3 0.0 0.0069 16.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR56683.1 - 0.0029 17.9 0.1 0.69 10.2 0.0 3.6 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 CQR56683.1 - 0.0041 17.5 0.8 0.025 15.0 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 CQR56683.1 - 0.0042 16.5 0.0 0.0094 15.4 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 CQR56683.1 - 0.0044 17.2 0.0 0.0086 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ABC_tran PF00005.27 CQR56683.1 - 0.006 17.1 0.1 0.049 14.1 0.0 2.3 2 0 0 2 2 2 1 ABC transporter Cytidylate_kin2 PF13189.6 CQR56683.1 - 0.0076 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.6 CQR56683.1 - 0.012 15.8 0.0 0.048 13.8 0.0 2.1 2 0 0 2 2 1 0 AAA domain TIP49 PF06068.13 CQR56683.1 - 0.04 13.1 0.2 0.083 12.1 0.0 1.5 2 0 0 2 2 2 0 TIP49 P-loop domain RNA_helicase PF00910.22 CQR56683.1 - 0.067 13.6 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.6 CQR56683.1 - 0.069 13.6 0.0 0.38 11.2 0.0 2.1 1 1 1 2 2 2 0 AAA domain T2SSE PF00437.20 CQR56683.1 - 0.081 12.0 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zot PF05707.12 CQR56683.1 - 0.13 11.8 0.2 1.2 8.7 0.2 2.1 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) SUKH_5 PF14567.6 CQR56684.1 - 3.2e-34 117.7 0.1 4e-34 117.3 0.1 1.0 1 0 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_6 PF14568.6 CQR56684.1 - 2.3e-13 50.6 0.3 4.6e-13 49.7 0.3 1.5 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall SMI1_KNR4 PF09346.10 CQR56684.1 - 1.9e-12 47.7 0.2 8.9e-12 45.5 0.2 1.8 1 1 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) MAGE PF01454.19 CQR56685.1 - 0.15 11.8 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 MAGE family SMI1_KNR4 PF09346.10 CQR56686.1 - 4e-18 66.1 2.7 7.4e-18 65.2 2.7 1.4 1 0 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) SUKH_6 PF14568.6 CQR56686.1 - 3.9e-16 59.6 8.4 2.5e-15 57.0 8.4 2.2 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall SUKH_5 PF14567.6 CQR56686.1 - 7.7e-14 51.6 2.0 6.2e-13 48.7 2.0 2.2 1 1 0 1 1 1 1 SMI1-KNR4 cell-wall WHH PF14414.6 CQR56688.1 - 0.0012 18.6 0.1 0.0025 17.6 0.1 1.5 1 0 0 1 1 1 1 A nuclease of the HNH/ENDO VII superfamily with conserved WHH IF2_N PF04760.15 CQR56688.1 - 0.023 14.5 0.1 0.92 9.4 0.2 3.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Colicin-DNase PF12639.7 CQR56688.1 - 0.051 14.4 0.3 0.051 14.4 0.3 4.4 4 1 0 4 4 4 0 DNase/tRNase domain of colicin-like bacteriocin DUF4111 PF13427.6 CQR56688.1 - 0.13 12.4 2.4 0.58 10.4 2.4 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4111) DUF1906 PF08924.11 CQR56691.1 - 3.4e-28 99.1 7.2 6.4e-28 98.3 7.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1906) XhlA PF10779.9 CQR56692.1 - 9e-05 22.6 5.4 0.0016 18.6 5.4 2.2 1 1 0 1 1 1 1 Haemolysin XhlA MtrG PF04210.13 CQR56692.1 - 0.11 12.4 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G Rad9 PF04139.13 CQR56692.1 - 0.15 11.5 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad9 HYR PF02494.16 CQR56693.1 - 2.3e-95 313.0 179.5 5.7e-06 26.6 1.3 23.8 25 0 0 25 25 25 22 HYR domain CBM_3 PF00942.18 CQR56693.1 - 1.8e-16 60.3 2.8 2e-15 56.9 2.8 3.1 1 0 0 1 1 1 1 Cellulose binding domain DUF4625 PF15418.6 CQR56693.1 - 1e-13 51.7 34.4 0.36 11.1 0.0 17.7 21 0 0 21 21 21 4 Domain of unknown function (DUF4625) E1_DerP2_DerF2 PF02221.15 CQR56693.1 - 7.1e-08 33.0 39.7 35 4.8 0.2 17.6 13 5 3 17 17 17 0 ML domain Big_3_3 PF13750.6 CQR56693.1 - 5.8e-06 26.0 120.3 0.37 10.4 0.2 22.2 13 6 10 24 24 24 11 Bacterial Ig-like domain (group 3) Big_1 PF02369.16 CQR56693.1 - 7.7e-05 22.6 2.4 7.7e-05 22.6 2.4 23.0 23 1 2 25 25 25 4 Bacterial Ig-like domain (group 1) Phage_AlpA PF05930.12 CQR56693.1 - 0.0029 17.4 0.0 32 4.4 0.0 6.8 8 0 0 8 8 8 0 Prophage CP4-57 regulatory protein (AlpA) YdaS_antitoxin PF15943.5 CQR56695.1 - 0.02 14.7 0.3 0.16 11.8 0.1 2.1 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 CQR56695.1 - 0.039 13.6 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR56695.1 - 0.085 12.4 0.3 0.15 11.6 0.3 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_16 PF12645.7 CQR56696.1 - 3.3e-07 30.2 0.3 4e-07 30.0 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Beta-lactamase PF00144.24 CQR56697.1 - 6.8e-27 94.6 0.1 1e-26 94.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase ABC_tran PF00005.27 CQR56698.1 - 3.9e-28 98.7 0.1 5.6e-28 98.2 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56698.1 - 4.2e-08 33.3 0.1 0.0016 18.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR56698.1 - 0.00028 20.6 0.1 0.00073 19.2 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR56698.1 - 0.00049 20.1 0.0 0.00091 19.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 CQR56698.1 - 0.00073 19.2 0.1 0.0027 17.3 0.0 1.9 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 CQR56698.1 - 0.002 17.6 0.2 0.0097 15.4 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 CQR56698.1 - 0.0033 16.5 0.1 0.0092 15.1 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 CQR56698.1 - 0.009 16.4 0.2 0.011 16.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF3987 PF13148.6 CQR56698.1 - 0.022 13.8 0.1 5.4 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_22 PF13401.6 CQR56698.1 - 0.023 15.0 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR56698.1 - 0.085 12.6 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR56698.1 - 0.086 12.9 0.1 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 CQR56698.1 - 0.11 12.2 0.2 0.55 9.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain FtsX PF02687.21 CQR56699.1 - 6.8e-16 58.5 18.7 5e-11 42.9 6.1 5.9 7 0 0 7 7 7 2 FtsX-like permease family MacB_PCD PF12704.7 CQR56699.1 - 0.0011 19.4 0.0 0.0011 19.4 0.0 3.5 4 0 0 4 4 4 1 MacB-like periplasmic core domain MFS_1 PF07690.16 CQR56700.1 - 1.2e-26 93.5 41.9 1.2e-26 93.5 41.9 2.0 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 CQR56700.1 - 6.6e-13 47.9 29.5 6.6e-13 47.9 29.5 1.7 1 1 1 2 2 2 1 Transmembrane secretion effector TetR_N PF00440.23 CQR56701.1 - 6.7e-17 61.0 0.9 8.7e-17 60.7 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR56701.1 - 0.00039 20.6 0.2 0.0013 18.9 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_27 PF17935.1 CQR56701.1 - 0.0014 18.7 0.1 0.018 15.1 0.0 2.7 1 1 2 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 CQR56701.1 - 0.011 16.0 0.1 0.73 10.1 0.0 2.4 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF1383 PF07134.11 CQR56701.1 - 0.011 14.9 0.2 0.015 14.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) CPBP PF02517.16 CQR56702.1 - 2e-15 56.9 6.1 2e-15 56.9 6.1 2.6 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF2569 PF10754.9 CQR56702.1 - 0.15 12.5 0.1 0.15 12.5 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2569) SLATT_3 PF18184.1 CQR56702.1 - 1.3 9.1 2.8 1 9.5 0.1 2.1 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 3 DUF2914 PF11141.8 CQR56703.1 - 0.0012 18.5 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2914) Cu_amine_oxidN1 PF07833.11 CQR56704.1 - 1.9e-27 95.6 10.1 2.1e-21 76.2 3.8 2.4 2 1 1 3 3 3 2 Copper amine oxidase N-terminal domain IpaB_EvcA PF03278.13 CQR56704.1 - 0.041 13.6 2.4 1.8 8.2 0.1 2.3 1 1 1 2 2 2 0 IpaB/EvcA family CheW PF01584.19 CQR56706.1 - 3e-22 78.8 0.9 6.2e-22 77.7 0.9 1.6 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 CQR56706.1 - 1.6e-17 64.0 0.1 3.2e-17 63.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 CQR56706.1 - 3.6e-17 62.4 0.1 3.6e-17 62.4 0.1 2.2 3 0 0 3 3 3 1 Hpt domain H-kinase_dim PF02895.14 CQR56706.1 - 2.1e-16 60.1 0.0 6.5e-16 58.5 0.0 1.9 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.11 CQR56706.1 - 2e-07 30.9 0.3 1.2e-06 28.5 0.1 2.5 2 1 0 2 2 2 1 P2 response regulator binding domain HATPase_c_3 PF13589.6 CQR56706.1 - 0.025 14.4 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 CQR56707.1 - 3.5e-27 94.7 0.5 3.9e-27 94.6 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 CQR56708.1 - 3.1e-44 150.8 25.7 3.1e-44 150.8 25.7 4.2 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 CQR56708.1 - 5.9e-31 107.4 2.1 5.9e-31 107.4 2.1 4.7 3 1 2 5 5 5 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 CQR56708.1 - 2e-15 56.9 2.2 9.2e-15 54.8 0.3 3.1 3 0 0 3 3 3 1 HAMP domain TarH PF02203.15 CQR56708.1 - 2.5e-11 43.8 0.2 2.5e-11 43.8 0.2 4.8 2 1 2 4 4 4 1 Tar ligand binding domain homologue HTH_AsnC-type PF13404.6 CQR56708.1 - 0.075 12.9 0.4 0.45 10.4 0.0 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 CQR56708.1 - 0.084 12.4 0.5 4.9 6.8 0.0 3.8 5 0 0 5 5 5 0 Winged helix-turn-helix DNA-binding LZ3wCH PF18517.1 CQR56708.1 - 0.085 13.0 0.7 2.7 8.1 0.4 2.6 2 0 0 2 2 2 0 Leucine zipper with capping helix domain Syntaxin_2 PF14523.6 CQR56708.1 - 0.26 11.7 16.0 6.8 7.1 0.1 4.6 3 1 0 3 3 3 0 Syntaxin-like protein Mce4_CUP1 PF11887.8 CQR56708.1 - 0.31 10.4 11.9 2.4 7.6 1.8 2.9 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative AAA_24 PF13479.6 CQR56708.1 - 0.58 9.8 3.0 1.9 8.2 0.8 2.2 1 1 1 2 2 2 0 AAA domain Mt_ATP-synt_B PF05405.14 CQR56708.1 - 0.99 9.0 17.1 0.043 13.4 8.2 2.9 2 1 1 3 3 3 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Sigma70_r1_1 PF03979.14 CQR56708.1 - 8.6 6.5 9.9 1.5 8.9 2.7 3.1 3 0 0 3 3 3 0 Sigma-70 factor, region 1.1 MFS_2 PF13347.6 CQR56709.1 - 8.7e-89 298.0 37.1 9.9e-89 297.8 37.1 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 CQR56709.1 - 9e-10 38.0 45.9 2.8e-05 23.2 11.2 3.0 1 1 2 3 3 3 2 Major Facilitator Superfamily E1-E2_ATPase PF00122.20 CQR56709.1 - 1.5 8.3 8.5 0.24 10.9 0.4 3.0 2 1 0 2 2 2 0 E1-E2 ATPase Bac_export_2 PF01312.19 CQR56709.1 - 1.8 7.7 9.5 0.11 11.7 3.5 2.1 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family PIG-L PF02585.17 CQR56710.1 - 1.6e-25 90.2 0.0 2.2e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Methyltransf_11 PF08241.12 CQR56711.1 - 1.3e-21 77.0 0.0 2.9e-21 75.9 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR56711.1 - 1.1e-20 74.1 0.0 2.3e-20 73.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56711.1 - 5.9e-19 68.4 0.0 7.6e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR56711.1 - 8.4e-12 44.9 0.0 1.1e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 CQR56711.1 - 2.1e-11 44.4 0.0 3.3e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR56711.1 - 8.6e-10 38.7 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 CQR56711.1 - 1.2e-05 25.0 0.0 1.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 CQR56711.1 - 2e-05 24.3 0.0 2.9e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 CQR56711.1 - 0.00028 20.4 0.0 0.0004 19.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_29 PF03141.16 CQR56711.1 - 0.00047 18.9 0.0 0.00063 18.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 CQR56711.1 - 0.008 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 CQR56711.1 - 0.027 14.3 0.0 0.15 11.9 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.11 CQR56711.1 - 0.036 13.0 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF938 PF06080.12 CQR56711.1 - 0.061 13.1 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.19 CQR56711.1 - 0.081 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 CQR56711.1 - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 CQR56711.1 - 0.15 11.7 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FtsJ PF01728.19 CQR56711.1 - 0.18 11.9 0.0 0.36 10.9 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_16 PF10294.9 CQR56711.1 - 0.18 11.5 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase GNAT_acetyltran PF12746.7 CQR56712.1 - 2e-26 93.0 0.0 1.5e-25 90.2 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_3 PF13302.7 CQR56712.1 - 3.5e-07 31.0 0.1 7.3e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56712.1 - 1.3e-05 25.4 0.1 2.4e-05 24.5 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 CQR56712.1 - 0.0089 16.0 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein OrfB_IS605 PF01385.19 CQR56713.1 - 3.3e-29 101.5 2.3 8.8e-29 100.2 2.3 1.7 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 CQR56713.1 - 1.2e-22 79.1 1.1 3.1e-22 77.8 1.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 CQR56713.1 - 1.8e-22 79.1 0.7 3.8e-22 78.0 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L32e PF01655.18 CQR56713.1 - 0.016 15.6 4.3 0.041 14.3 4.3 1.7 1 0 0 1 1 1 0 Ribosomal protein L32 zf-RanBP PF00641.18 CQR56713.1 - 2.3 7.6 7.4 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Asparaginase PF00710.20 CQR56714.1 - 4.2e-56 189.5 0.0 6.4e-56 188.9 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 CQR56714.1 - 6.3e-19 68.3 0.0 2e-18 66.6 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Oxidored_FMN PF00724.20 CQR56715.1 - 5.4e-57 193.6 0.0 2.1e-56 191.7 0.0 1.7 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family AP_endonuc_2 PF01261.24 CQR56715.1 - 0.036 13.5 0.0 3.2 7.1 0.0 2.7 3 1 0 3 3 3 0 Xylose isomerase-like TIM barrel TetR_C_8 PF14278.6 CQR56716.1 - 0.0039 17.3 0.0 0.0043 17.1 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator C-terminal region AAA_33 PF13671.6 CQR56717.1 - 1.3e-11 44.9 0.0 1.6e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR56717.1 - 0.0027 18.3 0.0 0.0049 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 CQR56717.1 - 0.0028 17.2 0.1 0.0056 16.2 0.0 1.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 CQR56717.1 - 0.0031 16.8 0.0 0.0055 16.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 CQR56717.1 - 0.0056 17.0 0.2 0.056 13.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 CQR56717.1 - 0.011 15.5 0.2 0.019 14.7 0.2 1.5 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 CQR56717.1 - 0.037 13.7 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 CQR56717.1 - 0.04 13.1 0.0 0.04 13.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit RNA_helicase PF00910.22 CQR56717.1 - 0.053 13.9 0.0 0.097 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 CQR56717.1 - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 CQR56717.1 - 0.14 12.0 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AA_permease PF00324.21 CQR56719.1 - 2.2e-64 217.8 41.2 2.8e-64 217.5 41.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 CQR56719.1 - 6.1e-39 134.1 43.0 7.6e-39 133.7 43.0 1.1 1 0 0 1 1 1 1 Amino acid permease Syndecan PF01034.20 CQR56719.1 - 6.7 6.7 5.7 4.9 7.1 0.0 3.7 4 0 0 4 4 4 0 Syndecan domain GGDEF PF00990.21 CQR56720.1 - 2.8e-42 144.2 0.0 7.5e-42 142.8 0.0 1.8 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain AAA_16 PF13191.6 CQR56720.1 - 1.3e-40 139.6 0.1 6e-40 137.4 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain Pkinase PF00069.25 CQR56720.1 - 1.6e-33 116.2 0.0 3.7e-33 115.0 0.0 1.6 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 CQR56720.1 - 1.5e-22 80.1 0.0 3.1e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase PAS_9 PF13426.7 CQR56720.1 - 1.6e-10 41.1 0.1 7.6e-10 39.0 0.1 2.3 1 0 0 1 1 1 1 PAS domain APH PF01636.23 CQR56720.1 - 4.4e-10 39.9 0.0 0.00063 19.7 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family PAS_8 PF13188.7 CQR56720.1 - 1e-09 38.2 0.0 5.2e-09 35.9 0.0 2.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 CQR56720.1 - 5.5e-09 36.0 0.1 1.6e-08 34.6 0.1 1.9 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 CQR56720.1 - 1.1e-07 32.5 0.0 2.9e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 CQR56720.1 - 8e-07 29.3 0.0 3.1e-06 27.4 0.0 2.2 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 CQR56720.1 - 1.3e-06 28.8 0.0 3.8e-06 27.2 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 CQR56720.1 - 2.8e-05 24.3 0.2 0.0002 21.6 0.1 2.7 2 0 0 2 2 1 1 PAS fold Sigma54_activat PF00158.26 CQR56720.1 - 0.00071 19.3 0.0 0.0018 18.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 CQR56720.1 - 0.00097 19.4 0.0 0.0037 17.6 0.0 2.0 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 CQR56720.1 - 0.0015 18.5 0.0 0.006 16.5 0.0 2.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 CQR56720.1 - 0.0024 17.8 0.0 0.01 15.7 0.0 2.1 2 0 0 2 2 2 1 NACHT domain NB-ARC PF00931.22 CQR56720.1 - 0.0042 16.3 0.0 0.011 14.9 0.0 1.7 1 0 0 1 1 1 1 NB-ARC domain AAA_30 PF13604.6 CQR56720.1 - 0.0057 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Kinase-like PF14531.6 CQR56720.1 - 0.01 15.2 0.0 0.018 14.3 0.0 1.4 1 0 0 1 1 1 0 Kinase-like ATP_bind_1 PF03029.17 CQR56720.1 - 0.018 14.9 0.0 0.046 13.5 0.0 1.8 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.13 CQR56720.1 - 0.03 13.5 0.1 0.19 10.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_19 PF13245.6 CQR56720.1 - 0.031 14.6 0.0 0.11 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR56720.1 - 0.039 13.4 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 P-loop containing dynein motor region PAS_7 PF12860.7 CQR56720.1 - 0.049 13.8 0.4 0.25 11.5 0.4 2.4 1 0 0 1 1 1 0 PAS fold NTPase_1 PF03266.15 CQR56720.1 - 0.051 13.5 0.1 0.24 11.3 0.0 2.3 2 0 0 2 2 2 0 NTPase HTH_42 PF06224.12 CQR56722.1 - 9.8e-63 212.7 1.0 1.1e-62 212.5 1.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain Hepar_II_III_N PF16889.5 CQR56723.1 - 3.5e-53 181.1 0.0 5.2e-53 180.5 0.0 1.2 1 0 0 1 1 1 1 Heparinase II/III N-terminus Hepar_II_III PF07940.13 CQR56723.1 - 2.2e-37 129.0 1.0 3.3e-37 128.4 1.0 1.2 1 0 0 1 1 1 1 Heparinase II/III-like protein DUF4962 PF16332.5 CQR56723.1 - 0.014 13.9 0.0 0.033 12.7 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4962) BPD_transp_1 PF00528.22 CQR56724.1 - 2.2e-19 69.9 16.9 2.2e-19 69.9 16.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR56725.1 - 2.2e-13 50.4 13.6 2.2e-13 50.4 13.6 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bac_export_2 PF01312.19 CQR56725.1 - 2.3 7.3 6.5 0.28 10.3 1.3 1.8 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family SBP_bac_1 PF01547.25 CQR56726.1 - 5.6e-21 75.8 13.1 5.6e-21 75.8 13.1 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR56727.1 - 5e-23 81.2 3.2 1.5e-22 79.7 3.2 1.8 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR56727.1 - 1.1e-13 51.6 2.5 2.1e-13 50.7 2.5 1.4 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 CQR56727.1 - 1.4e-07 31.8 0.1 4.7e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR56727.1 - 1.9e-05 25.1 0.0 4.6e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7TM_GPCR_Srb PF02175.16 CQR56727.1 - 0.014 15.2 0.1 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srb FtsQ PF03799.15 CQR56727.1 - 0.031 15.1 0.1 0.24 12.3 0.0 2.4 2 0 0 2 2 2 0 Cell division protein FtsQ NPV_P10 PF05531.12 CQR56727.1 - 2.2 8.8 8.5 3 8.4 1.9 3.4 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Response_reg PF00072.24 CQR56728.1 - 1.4e-20 73.5 0.0 3.2e-20 72.4 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR56728.1 - 2e-20 72.8 0.1 6e-20 71.3 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56728.1 - 7.8e-17 60.9 0.7 3.2e-07 30.3 0.0 3.1 4 0 0 4 4 4 2 Bacterial regulatory helix-turn-helix proteins, AraC family AP_endonuc_2 PF01261.24 CQR56729.1 - 1.4e-06 27.9 0.0 1.7e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel 3-dmu-9_3-mt PF06983.13 CQR56730.1 - 9.5e-12 45.5 0.0 1.1e-11 45.2 0.0 1.1 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.25 CQR56730.1 - 1.2e-06 28.8 0.0 2.6e-06 27.7 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HATPase_c PF02518.26 CQR56731.1 - 2e-42 144.2 0.7 1.8e-28 99.2 0.1 2.4 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR56731.1 - 6.8e-23 81.0 0.0 1.2e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain His_kinase PF06580.13 CQR56731.1 - 8.3e-23 80.5 3.0 3e-22 78.7 3.0 2.0 1 0 0 1 1 1 1 Histidine kinase 7TMR-DISM_7TM PF07695.11 CQR56731.1 - 4.1e-12 46.4 31.5 4.1e-12 46.4 31.5 1.7 2 0 0 2 2 2 1 7TM diverse intracellular signalling HisKA PF00512.25 CQR56731.1 - 4.3e-11 42.7 1.1 1.4e-10 41.0 1.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR56731.1 - 2.4e-06 27.4 0.0 0.0035 17.2 0.0 2.3 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR56731.1 - 2e-05 24.5 0.0 0.036 14.0 0.0 2.5 2 0 0 2 2 2 2 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 CQR56731.1 - 0.00015 21.6 0.0 0.0043 16.9 0.0 2.5 2 0 0 2 2 2 1 GHKL domain CBS PF00571.28 CQR56732.1 - 3e-16 59.6 0.0 6.2e-09 36.2 0.0 2.2 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.8 CQR56732.1 - 0.097 12.6 0.1 0.85 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) STAS PF01740.21 CQR56733.1 - 1.3e-10 40.9 0.1 1.6e-10 40.6 0.1 1.1 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 CQR56733.1 - 6.9e-10 39.1 0.0 7.6e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 STAS domain MCPsignal PF00015.21 CQR56734.1 - 2.1e-43 148.1 45.8 8.3e-42 142.9 22.4 3.9 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR56734.1 - 1.2e-34 120.3 0.2 1.2e-34 120.3 0.2 3.4 3 1 1 4 4 4 1 Cache domain HAMP PF00672.25 CQR56734.1 - 5.5e-14 52.3 0.2 4.6e-11 42.9 0.0 4.1 3 0 0 3 3 3 1 HAMP domain dCache_2 PF08269.11 CQR56734.1 - 0.0001 21.6 0.3 0.0001 21.6 0.3 3.4 2 2 0 2 2 2 1 Cache domain sCache_2 PF17200.4 CQR56734.1 - 0.0011 18.9 0.6 0.0011 18.9 0.6 3.6 3 2 2 5 5 5 1 Single Cache domain 2 GGDEF_2 PF17853.1 CQR56734.1 - 0.31 11.3 3.8 5.7 7.2 0.9 2.9 2 1 0 2 2 2 0 GGDEF-like domain DUF3139 PF11337.8 CQR56734.1 - 0.48 11.1 3.2 13 6.5 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3139) V_ATPase_I PF01496.19 CQR56734.1 - 5.9 4.7 14.8 8.7 4.1 13.8 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2680 PF10925.8 CQR56734.1 - 9.9 6.3 8.0 54 3.9 0.1 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF2680) HATPase_c_2 PF13581.6 CQR56735.1 - 2.8e-16 59.6 0.0 3.2e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 CQR56735.1 - 0.075 13.5 0.0 0.11 13.0 0.0 1.3 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SpoIIE PF07228.12 CQR56736.1 - 1.8e-22 80.2 0.0 3.2e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) PAS_9 PF13426.7 CQR56736.1 - 1.9e-20 73.0 0.0 5.8e-13 49.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 CQR56736.1 - 1.8e-14 53.7 0.0 2.9e-10 40.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 CQR56736.1 - 3e-13 49.4 0.0 5.3e-06 26.3 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 CQR56736.1 - 0.00024 21.3 0.0 0.087 13.1 0.0 3.0 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.12 CQR56736.1 - 0.0034 17.6 0.0 0.012 15.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold Peptidase_M24 PF00557.24 CQR56737.1 - 7.6e-53 179.3 0.1 8.6e-53 179.1 0.1 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF4949 PF16307.5 CQR56737.1 - 0.03 14.4 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4949) VPS11_C PF12451.8 CQR56737.1 - 0.082 13.2 0.7 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 Vacuolar protein sorting protein 11 C terminal NIR_SIR PF01077.22 CQR56738.1 - 1e-52 177.9 0.0 7.6e-46 155.5 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 CQR56738.1 - 9.4e-31 105.5 0.3 6.4e-15 54.8 0.0 3.3 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain FAD_binding_1 PF00667.20 CQR56739.1 - 9.3e-35 120.2 0.0 1.9e-34 119.2 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Flavodoxin_1 PF00258.25 CQR56739.1 - 3.6e-30 105.1 0.0 6.1e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin NAD_binding_1 PF00175.21 CQR56739.1 - 6.3e-20 71.9 0.0 2.4e-19 70.0 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain Flavodoxin_5 PF12724.7 CQR56739.1 - 0.018 15.3 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain TetR_C_8 PF14278.6 CQR56740.1 - 2.6e-13 50.0 0.0 4.7e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR56740.1 - 6.9e-13 48.2 0.0 1.4e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR56740.1 - 0.0041 17.3 0.0 0.0062 16.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Abhydrolase_1 PF00561.20 CQR56741.1 - 6.5e-11 42.4 0.0 2.1e-10 40.7 0.0 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR56741.1 - 7.1e-08 33.3 0.0 9.6e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR56741.1 - 1.9e-06 27.3 0.0 3.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 CQR56741.1 - 0.021 14.3 0.0 0.18 11.2 0.0 2.3 2 1 0 2 2 2 0 Prolyl oligopeptidase family Ndr PF03096.14 CQR56741.1 - 0.032 12.9 0.0 0.05 12.3 0.0 1.2 1 0 0 1 1 1 0 Ndr family Esterase PF00756.20 CQR56741.1 - 0.047 13.3 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative esterase Peptidase_S15 PF02129.18 CQR56741.1 - 0.055 13.0 0.0 0.12 12.0 0.0 1.6 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 CQR56741.1 - 0.15 10.7 0.1 2 7.0 0.0 2.2 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) Peptidase_A8 PF01252.18 CQR56742.1 - 1.8e-29 102.8 1.7 2e-29 102.6 1.7 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II TraT PF05818.12 CQR56742.1 - 0.0095 15.6 0.3 0.013 15.2 0.3 1.1 1 0 0 1 1 1 1 Enterobacterial TraT complement resistance protein Gly-zipper_Omp PF13488.6 CQR56742.1 - 0.022 14.7 0.4 0.022 14.7 0.4 1.6 2 0 0 2 2 2 0 Glycine zipper DUF421 PF04239.12 CQR56743.1 - 1.8e-30 104.9 0.0 1.9e-28 98.3 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF421) RVT_1 PF00078.27 CQR56744.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR56744.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR56744.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase Aldo_ket_red PF00248.21 CQR56745.1 - 2.9e-69 233.5 0.0 3.6e-69 233.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ESCRT-II PF05871.12 CQR56745.1 - 0.059 13.6 0.1 0.29 11.4 0.0 1.9 2 0 0 2 2 2 0 ESCRT-II complex subunit HATPase_c PF02518.26 CQR56746.1 - 8.3e-27 93.9 0.2 1.9e-26 92.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56746.1 - 3.6e-22 78.2 3.3 3.8e-22 78.1 0.2 2.9 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 CQR56746.1 - 8e-12 45.3 0.1 1.5e-08 34.8 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 CQR56746.1 - 1.5e-10 41.0 0.1 1.4e-05 25.0 0.0 3.3 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.24 CQR56746.1 - 3.2e-10 40.2 0.0 8.1e-10 38.9 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 CQR56746.1 - 4.1e-09 36.7 0.0 0.0011 19.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold HAMP PF00672.25 CQR56746.1 - 1.8e-07 31.4 1.0 9.6e-07 29.1 0.2 2.7 2 0 0 2 2 2 1 HAMP domain PAS_3 PF08447.12 CQR56746.1 - 2.8e-05 24.3 0.0 0.00014 22.1 0.0 2.3 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 CQR56746.1 - 0.00031 20.6 0.8 0.0032 17.3 0.0 2.8 3 0 0 3 3 3 1 GHKL domain HATPase_c_3 PF13589.6 CQR56746.1 - 0.00053 19.8 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TarH PF02203.15 CQR56746.1 - 0.0013 18.7 4.2 0.0013 18.7 4.2 2.6 2 1 0 2 2 2 1 Tar ligand binding domain homologue GAF_3 PF13492.6 CQR56746.1 - 0.0016 18.8 0.0 0.74 10.2 0.0 2.7 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 CQR56746.1 - 0.022 15.0 0.0 0.74 10.1 0.0 2.6 2 0 0 2 2 2 0 GAF domain PAS_8 PF13188.7 CQR56746.1 - 0.041 13.9 0.0 2.1 8.5 0.0 2.7 2 0 0 2 2 2 0 PAS domain Cortexin PF11057.8 CQR56746.1 - 0.13 12.1 0.0 0.13 12.1 0.0 2.0 2 0 0 2 2 1 0 Cortexin of kidney Col_cuticle_N PF01484.17 CQR56746.1 - 3.8 7.6 4.6 2.1 8.5 0.2 2.8 3 0 0 3 3 3 0 Nematode cuticle collagen N-terminal domain Response_reg PF00072.24 CQR56747.1 - 8.1e-29 100.1 1.0 9.1e-29 99.9 1.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GGDEF PF00990.21 CQR56748.1 - 1.4e-43 148.4 0.1 2.3e-43 147.7 0.1 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 CQR56748.1 - 1e-41 141.6 0.2 1.1e-20 73.8 0.2 2.3 2 0 0 2 2 2 2 Response regulator receiver domain Hpt PF01627.23 CQR56748.1 - 0.00012 22.3 0.0 0.00044 20.5 0.0 2.0 2 0 0 2 2 2 1 Hpt domain ACT_6 PF13740.6 CQR56749.1 - 3.9e-15 55.6 0.1 4.8e-15 55.3 0.1 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 CQR56749.1 - 8.2e-13 47.9 0.1 1.1e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 CQR56749.1 - 0.00019 21.9 0.3 0.0003 21.3 0.2 1.4 1 1 0 1 1 1 1 ACT domain LVIVD PF08309.11 CQR56749.1 - 0.0003 20.0 0.1 0.033 13.5 0.0 2.2 2 0 0 2 2 2 2 LVIVD repeat ACT_7 PF13840.6 CQR56749.1 - 0.0021 17.8 0.1 0.0035 17.1 0.1 1.3 1 0 0 1 1 1 1 ACT domain DUF2670 PF10875.8 CQR56749.1 - 0.02 15.0 0.1 0.022 14.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2670) SwrA PF17423.2 CQR56749.1 - 0.054 13.5 0.4 0.067 13.2 0.4 1.1 1 0 0 1 1 1 0 Swarming motility protein DUF711 PF05167.12 CQR56750.1 - 1.1e-182 607.4 9.9 1.4e-182 607.1 9.9 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Sigma70_r4_2 PF08281.12 CQR56751.1 - 2.4e-10 39.9 0.3 9.2e-10 38.1 0.1 2.1 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR56751.1 - 5.4e-09 35.7 0.1 1.5e-08 34.2 0.1 1.8 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR56751.1 - 3.4e-05 23.3 0.1 0.0001 21.8 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 SnoaL_2 PF12680.7 CQR56751.1 - 0.0047 17.5 0.0 0.0091 16.6 0.0 1.5 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 CQR56751.1 - 0.11 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) CMD PF02627.20 CQR56752.1 - 2.4e-13 49.9 0.0 3.9e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DDE_Tnp_1 PF01609.21 CQR56753.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR56753.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR56753.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR56753.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain MFS_1 PF07690.16 CQR56754.1 - 7.7e-60 202.7 51.2 1.1e-59 202.1 48.6 2.2 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR56754.1 - 1.1e-07 31.1 12.6 1.1e-07 31.1 12.6 3.9 2 1 1 4 4 4 2 Sugar (and other) transporter MFS_3 PF05977.13 CQR56754.1 - 3.7e-05 22.3 26.3 3.8e-05 22.3 9.9 2.3 2 1 0 2 2 2 2 Transmembrane secretion effector MarR PF01047.22 CQR56755.1 - 2.9e-13 49.5 0.0 6e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR56755.1 - 4.2e-12 45.8 0.0 7.4e-12 45.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR56755.1 - 1.9e-09 37.9 0.0 3.8e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR56755.1 - 1.3e-05 24.7 0.0 2.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 CQR56755.1 - 0.0002 21.2 0.0 0.0019 18.0 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 CQR56755.1 - 0.0048 16.8 0.0 0.0083 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 CQR56755.1 - 0.0082 16.0 0.1 0.027 14.3 0.1 1.8 1 1 1 2 2 2 1 TFIIE alpha subunit Fe_dep_repress PF01325.19 CQR56755.1 - 0.0086 16.3 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.12 CQR56755.1 - 0.01 16.0 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 CQR56755.1 - 0.019 15.1 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 CQR56755.1 - 0.027 14.5 0.1 0.11 12.5 0.1 2.0 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain Replic_Relax PF13814.6 CQR56755.1 - 0.051 13.6 0.0 0.066 13.3 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_20 PF12840.7 CQR56755.1 - 0.057 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA_edit PF04073.15 CQR56756.1 - 6.3e-27 94.1 0.1 7.9e-27 93.8 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain MFS_1 PF07690.16 CQR56757.1 - 5.2e-37 127.6 54.9 1.7e-36 125.9 41.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 CQR56757.1 - 0.0011 18.4 37.1 0.0014 18.0 37.1 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF1077 PF06417.12 CQR56757.1 - 0.14 12.2 5.9 2 8.5 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1077) YrhC PF14143.6 CQR56757.1 - 2.8 8.1 5.5 1 9.5 0.1 3.0 3 0 0 3 3 3 0 YrhC-like protein SBP_bac_1 PF01547.25 CQR56758.1 - 3.1e-10 40.5 0.9 6.6e-10 39.4 0.9 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR56758.1 - 9.4e-10 38.8 0.3 1.8e-09 37.8 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR56759.1 - 2.1e-24 85.8 0.0 3.9e-24 85.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR56759.1 - 4.1e-21 75.0 0.7 1.3e-20 73.4 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56759.1 - 1e-10 41.4 0.0 2.4e-05 24.3 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family His_kinase PF06580.13 CQR56760.1 - 9e-23 80.4 1.1 2.7e-22 78.9 1.1 1.8 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR56760.1 - 1.9e-08 34.8 0.1 4.8e-08 33.5 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR56760.1 - 0.087 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain FixQ PF05545.11 CQR56760.1 - 0.12 12.3 1.2 0.37 10.8 1.2 1.7 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ HAMP PF00672.25 CQR56760.1 - 0.14 12.6 0.0 0.36 11.3 0.0 1.8 1 0 0 1 1 1 0 HAMP domain SBP_bac_8 PF13416.6 CQR56761.1 - 1.8e-10 41.1 10.3 1.8e-10 41.1 10.3 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR56762.1 - 2.9e-11 43.4 25.4 3.4e-10 40.0 25.4 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF308 PF03729.13 CQR56762.1 - 0.26 11.6 7.5 4.6 7.6 1.7 3.0 3 0 0 3 3 3 0 Short repeat of unknown function (DUF308) ISK_Channel PF02060.15 CQR56762.1 - 1.2 8.9 4.4 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 Slow voltage-gated potassium channel BPD_transp_1 PF00528.22 CQR56763.1 - 7.3e-18 65.0 17.2 7.3e-18 65.0 17.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FAA_hydrolase PF01557.18 CQR56764.1 - 3.4e-72 242.7 0.0 4.1e-72 242.4 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family SGL PF08450.12 CQR56765.1 - 9.2e-77 257.9 0.1 1.1e-76 257.7 0.1 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Reg_prop PF07494.11 CQR56765.1 - 1.7e-05 24.5 0.4 0.0087 16.2 0.0 2.9 2 0 0 2 2 2 2 Two component regulator propeller WW PF00397.26 CQR56765.1 - 0.00033 20.7 1.6 0.33 11.1 0.0 3.1 4 0 0 4 4 4 2 WW domain GyrI-like PF06445.15 CQR56766.1 - 7.8e-19 68.5 0.0 9.4e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain MFS_1 PF07690.16 CQR56767.1 - 7.4e-50 169.8 61.6 3.9e-36 124.7 18.0 2.7 2 1 1 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR56767.1 - 6.7e-17 61.5 36.7 2.8e-15 56.2 12.4 2.9 2 1 1 3 3 3 2 Sugar (and other) transporter TRI12 PF06609.13 CQR56767.1 - 2.1e-10 39.7 19.5 2.1e-10 39.7 19.5 1.6 1 1 1 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.6 CQR56767.1 - 3e-05 22.8 42.1 0.0089 14.6 9.7 3.9 2 2 0 3 3 3 3 MFS/sugar transport protein OATP PF03137.20 CQR56767.1 - 6.1 5.0 18.6 1.1 7.5 6.2 3.2 1 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Bactofilin PF04519.13 CQR56768.1 - 1.1e-07 32.0 6.5 9.1e-07 29.1 2.5 2.9 2 1 0 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.24 CQR56768.1 - 0.051 13.3 3.7 3.1 7.6 0.4 2.7 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Phage_spike PF18715.1 CQR56768.1 - 0.98 9.5 4.8 25 5.1 0.1 3.3 2 1 1 3 3 3 0 Phage spike trimer DUF4004 PF13171.6 CQR56770.1 - 4.9e-71 239.1 0.5 5.6e-71 238.9 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4004) HTH_26 PF13443.6 CQR56770.1 - 0.043 14.3 0.1 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Phage_AlpA PF05930.12 CQR56770.1 - 0.098 12.5 0.1 0.43 10.4 0.1 2.0 1 1 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) Acetyltransf_9 PF13527.7 CQR56771.1 - 3.4e-16 59.5 0.0 4.9e-15 55.7 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56771.1 - 8.8e-08 32.4 0.0 2.3e-06 27.8 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR56771.1 - 1e-06 29.1 0.0 2e-05 24.9 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56771.1 - 3.1e-05 23.9 0.0 9.1e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 CQR56771.1 - 5.5e-05 23.1 0.0 0.00031 20.7 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR56771.1 - 0.0004 20.5 0.0 0.00079 19.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 CQR56771.1 - 0.0023 17.4 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase NodA PF02474.15 CQR56771.1 - 0.15 11.7 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein A (NodA) vWA-TerF-like PF10138.9 CQR56772.1 - 1.5e-77 260.3 0.1 2e-77 259.9 0.1 1.1 1 0 0 1 1 1 1 vWA found in TerF C terminus TerD PF02342.18 CQR56772.1 - 4.6e-25 88.2 0.0 1.5e-24 86.6 0.0 1.8 2 0 0 2 2 2 1 TerD domain Copine PF07002.16 CQR56772.1 - 0.0015 18.1 0.0 0.0051 16.3 0.0 1.9 2 0 0 2 2 2 1 Copine Ribosomal_TL5_C PF14693.6 CQR56773.1 - 2.9e-21 75.6 0.0 5.6e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein TL5, C-terminal domain Ribosomal_L25p PF01386.19 CQR56773.1 - 2.2e-17 63.4 0.0 1.5e-16 60.7 0.0 1.9 2 0 0 2 2 2 1 Ribosomal L25p family AAA_PrkA PF08298.11 CQR56773.1 - 0.02 13.8 0.0 0.025 13.5 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain ABC_tran PF00005.27 CQR56775.1 - 2.3e-30 105.9 0.0 3e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR56775.1 - 8.4e-19 67.9 0.2 1.3e-18 67.2 0.2 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR56775.1 - 6.3e-07 29.5 0.2 0.0028 17.5 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56775.1 - 0.0055 17.0 0.0 0.013 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR56775.1 - 0.0063 16.9 0.0 0.0085 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 CQR56775.1 - 0.021 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 CQR56775.1 - 0.023 14.4 0.3 0.042 13.6 0.3 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 CQR56775.1 - 0.031 13.5 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain SMC_N PF02463.19 CQR56775.1 - 0.05 13.0 0.1 0.39 10.1 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR56775.1 - 0.065 13.1 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 CQR56775.1 - 0.2 11.6 0.1 0.37 10.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 CQR56775.1 - 0.27 9.8 0.5 3.9 6.0 0.4 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 CQR56776.1 - 1.6e-27 96.7 0.0 2.3e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR56776.1 - 6.2e-16 58.7 0.2 1.1e-15 57.9 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR56776.1 - 2.5e-05 23.8 0.0 5.6e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR56776.1 - 0.00028 20.8 0.6 0.0007 19.5 0.1 1.8 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ATP-synt_ab PF00006.25 CQR56776.1 - 0.0082 15.8 0.7 0.017 14.8 0.5 1.6 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 CQR56776.1 - 0.0095 16.3 0.0 0.017 15.5 0.0 1.5 2 0 0 2 2 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR56776.1 - 0.032 14.2 0.2 0.058 13.3 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 CQR56776.1 - 0.035 14.4 1.2 0.89 9.8 0.2 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 CQR56776.1 - 0.04 13.8 0.1 0.083 12.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 CQR56776.1 - 0.069 13.6 0.3 0.29 11.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 CQR56776.1 - 0.071 12.5 0.2 1.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 CQR56776.1 - 0.081 12.7 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 CQR56776.1 - 0.09 12.5 0.7 0.14 11.9 0.1 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 CQR56776.1 - 0.094 12.2 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 CQR56776.1 - 0.099 12.2 0.0 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 CQR56776.1 - 0.12 11.8 0.1 8.2 5.7 0.0 2.5 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 CQR56776.1 - 0.15 12.0 0.1 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SAM_3 PF18016.1 CQR56776.1 - 0.18 11.6 0.0 0.43 10.4 0.0 1.7 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) AAA_29 PF13555.6 CQR56776.1 - 0.2 11.4 0.0 0.39 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.9 CQR56776.1 - 0.21 10.4 0.6 0.51 9.1 0.6 1.6 1 1 0 1 1 1 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 CQR56777.1 - 6.8e-31 107.4 12.1 2e-30 105.9 10.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR56777.1 - 3.2e-11 43.0 0.5 3.2e-11 43.0 0.5 3.9 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 CQR56778.1 - 1.9e-42 145.1 11.9 1.9e-42 145.1 11.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2981 PF11200.8 CQR56778.1 - 1.4 8.6 3.0 2.3 7.9 3.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) TMEM208_SND2 PF05620.11 CQR56778.1 - 6.4 6.5 8.0 14 5.4 7.7 1.8 1 1 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 SBP_bac_5 PF00496.22 CQR56779.1 - 1.3e-80 271.2 5.2 1.7e-80 270.8 5.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4969 PF16339.5 CQR56779.1 - 0.098 13.0 0.0 0.32 11.4 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) DUF3558 PF12079.8 CQR56779.1 - 5.5 7.0 6.8 10 6.1 6.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) HTH_5 PF01022.20 CQR56780.1 - 2.5e-07 30.4 0.0 6.2e-07 29.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR56780.1 - 2.3e-05 24.4 0.0 4.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 CQR56780.1 - 0.0012 18.6 0.0 0.0029 17.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 CQR56780.1 - 0.0075 15.8 0.1 0.024 14.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 CQR56780.1 - 0.011 15.1 0.0 0.031 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 CQR56780.1 - 0.032 14.0 0.0 0.2 11.5 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TetR_N PF00440.23 CQR56780.1 - 0.15 11.9 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Acetyltransf_CG PF14542.6 CQR56781.1 - 1.2e-26 92.7 0.1 1.3e-26 92.5 0.1 1.0 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 CQR56781.1 - 7.6e-07 29.4 0.0 8e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR56781.1 - 8.3e-07 29.0 0.0 9.3e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56781.1 - 8.6e-05 22.9 0.0 0.00011 22.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR56782.1 - 5.7e-19 68.5 0.1 1.5e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR56782.1 - 1.5e-17 63.7 0.0 3.9e-10 39.8 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56782.1 - 2.1e-13 50.5 0.0 1.1e-08 35.3 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR56782.1 - 8e-09 36.3 0.2 6.5e-05 23.6 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56782.1 - 7.2e-06 25.9 0.0 0.0071 16.3 0.0 2.4 2 0 0 2 2 2 2 FR47-like protein Acetyltransf_9 PF13527.7 CQR56782.1 - 0.00069 19.7 0.0 1.3 9.1 0.0 2.9 3 1 0 3 3 3 2 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR56782.1 - 0.0018 17.9 0.0 0.12 12.1 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 CQR56782.1 - 0.017 14.6 0.0 0.085 12.3 0.0 2.0 2 1 0 2 2 2 0 Putative acetyl-transferase Acetyltransf_4 PF13420.7 CQR56782.1 - 0.056 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Epimerase PF01370.21 CQR56783.1 - 4.3e-05 23.1 0.0 6.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 CQR56783.1 - 0.04 13.0 0.0 0.06 12.4 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain DUF4396 PF14342.6 CQR56783.1 - 0.085 13.2 0.2 0.17 12.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) KR PF08659.10 CQR56783.1 - 0.2 11.6 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 KR domain HxlR PF01638.17 CQR56785.1 - 5.6e-34 115.9 0.1 6.6e-34 115.6 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR56785.1 - 0.0034 17.3 0.1 0.0058 16.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.10 CQR56785.1 - 0.087 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_24 PF13412.6 CQR56785.1 - 0.18 11.4 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Flavodoxin_1 PF00258.25 CQR56787.1 - 7.4e-30 104.0 0.6 8.3e-30 103.9 0.6 1.0 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 CQR56787.1 - 1.7e-07 31.5 0.0 3.4e-07 30.6 0.0 1.5 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_3 PF12641.7 CQR56787.1 - 3.7e-05 23.5 0.0 4.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Glyoxalase PF00903.25 CQR56788.1 - 5.4e-08 33.1 0.0 1.2e-07 32.0 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 CQR56788.1 - 4.4e-06 27.4 0.0 5.2e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 CQR56788.1 - 0.0024 18.0 0.0 0.0093 16.1 0.0 1.8 1 1 1 2 2 2 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 CQR56788.1 - 0.0057 16.6 0.0 0.0089 16.0 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 CQR56788.1 - 0.056 13.7 0.0 0.59 10.4 0.0 2.0 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HTH_18 PF12833.7 CQR56789.1 - 1.8e-12 47.3 0.0 3.3e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56789.1 - 2.1e-07 30.9 0.0 0.0046 17.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AbiEi_4 PF13338.6 CQR56789.1 - 0.015 15.5 0.2 0.062 13.5 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Methyltrans_SAM PF10672.9 CQR56790.1 - 1.5e-19 70.3 0.0 2.1e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.15 CQR56790.1 - 1.1e-08 35.0 0.0 1.5e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 CQR56790.1 - 2.6e-05 23.9 0.0 3.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 CQR56790.1 - 0.00013 22.6 0.0 0.00021 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56790.1 - 0.0035 17.1 0.0 0.0059 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 CQR56790.1 - 0.0051 16.4 0.0 0.0076 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 CQR56790.1 - 0.0052 16.5 0.0 0.0069 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 CQR56790.1 - 0.0071 17.0 0.0 0.012 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PseudoU_synth_2 PF00849.22 CQR56791.1 - 2.4e-28 99.2 0.0 3e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase MarR PF01047.22 CQR56792.1 - 1.9e-16 59.7 0.1 2.9e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR56792.1 - 2.7e-12 46.4 0.8 4.1e-12 45.8 0.8 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR56792.1 - 1.9e-09 37.9 0.2 3.5e-09 37.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 CQR56792.1 - 2.3e-05 24.5 0.0 3.6e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 CQR56792.1 - 5.9e-05 23.2 0.0 9.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 CQR56792.1 - 7.1e-05 22.5 0.4 0.00014 21.6 0.4 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.10 CQR56792.1 - 0.00028 20.9 0.0 0.0005 20.1 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.6 CQR56792.1 - 0.00083 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 CQR56792.1 - 0.002 18.0 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 CQR56792.1 - 0.0028 17.6 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Dimerisation2 PF16864.5 CQR56792.1 - 0.007 16.3 0.0 0.0099 15.8 0.0 1.2 1 0 0 1 1 1 1 Dimerisation domain Penicillinase_R PF03965.16 CQR56792.1 - 0.0075 16.6 0.0 0.0093 16.3 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor PadR PF03551.14 CQR56792.1 - 0.0089 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 CQR56792.1 - 0.011 15.5 0.2 0.071 12.9 0.2 2.1 1 1 0 1 1 1 0 LexA DNA binding domain Dimerisation PF08100.11 CQR56792.1 - 0.019 15.0 0.2 0.031 14.3 0.2 1.3 1 0 0 1 1 1 0 Dimerisation domain HTH_20 PF12840.7 CQR56792.1 - 0.028 14.5 0.8 0.048 13.7 0.8 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 CQR56792.1 - 0.029 14.1 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) SelB-wing_2 PF09106.11 CQR56792.1 - 0.092 13.0 0.1 0.18 12.0 0.1 1.6 1 1 0 1 1 1 0 Elongation factor SelB, winged helix Rrf2 PF02082.20 CQR56792.1 - 0.12 12.7 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 CQR56792.1 - 0.14 12.3 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DNA_topoisoIV PF00521.20 CQR56793.1 - 3.7e-150 500.6 0.3 4.5e-150 500.2 0.3 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 CQR56793.1 - 1.1e-40 136.8 4.4 3.9e-13 48.6 0.0 6.9 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller Nnf1 PF03980.14 CQR56793.1 - 0.0023 18.3 0.6 0.0055 17.1 0.2 1.8 1 1 1 2 2 2 1 Nnf1 RPW8 PF05659.11 CQR56793.1 - 0.028 14.1 0.8 0.065 12.9 0.8 1.5 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DNA_gyraseB PF00204.25 CQR56794.1 - 3.4e-58 196.0 1.3 7.5e-58 194.8 1.3 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 CQR56794.1 - 2.7e-30 104.3 0.2 6.2e-30 103.2 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 CQR56794.1 - 2.6e-20 73.0 0.1 6e-20 71.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 CQR56794.1 - 8.7e-17 61.2 0.0 1.9e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 CQR56794.1 - 0.0015 18.4 0.0 0.0044 16.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPRIM_C PF16898.5 CQR56794.1 - 0.039 14.2 0.1 0.076 13.3 0.1 1.5 1 0 0 1 1 1 0 C-terminal associated domain of TOPRIM ABC2_membrane_2 PF12679.7 CQR56795.1 - 8.6e-25 87.6 16.2 1.7e-24 86.6 16.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR56795.1 - 1.1e-15 58.0 30.6 1.4e-12 47.9 15.9 3.7 2 1 1 3 3 3 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR56795.1 - 4.2e-05 23.2 1.7 4.2e-05 23.2 1.7 4.0 3 1 1 4 4 4 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR56795.1 - 0.0018 17.4 23.5 0.0018 17.4 23.5 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein MSP1b PF03429.13 CQR56795.1 - 0.3 9.1 3.1 0.38 8.8 3.1 1.1 1 0 0 1 1 1 0 Major surface protein 1B DUF2705 PF10920.8 CQR56795.1 - 0.68 9.2 20.9 0.24 10.7 14.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2705) ABC_tran PF00005.27 CQR56796.1 - 5.4e-29 101.5 0.0 7.8e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR56796.1 - 1.2e-14 54.9 0.1 1.1e-09 38.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR56796.1 - 0.0026 18.3 0.0 0.0044 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR56796.1 - 0.008 15.9 0.0 0.02 14.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR56796.1 - 0.016 15.5 0.0 0.15 12.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR56796.1 - 0.021 15.0 0.1 0.14 12.4 0.0 2.3 3 0 0 3 3 3 0 Putative exonuclease SbcCD, C subunit DUF4162 PF13732.6 CQR56796.1 - 0.042 14.6 0.1 0.14 12.9 0.1 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4162) AAA_16 PF13191.6 CQR56796.1 - 0.05 14.0 0.0 0.14 12.6 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 CQR56796.1 - 0.053 13.1 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 CQR56796.1 - 0.085 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3906 PF13046.6 CQR56796.1 - 0.15 12.2 0.3 0.34 11.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) Thymidylate_kin PF02223.17 CQR56796.1 - 0.17 11.5 0.0 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_33 PF13671.6 CQR56796.1 - 0.2 11.8 0.0 1.2 9.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain Lipase_GDSL_2 PF13472.6 CQR56797.1 - 4.1e-23 82.7 0.1 5.8e-23 82.2 0.1 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR56797.1 - 3.5e-14 53.3 1.0 2.6e-13 50.4 1.0 1.9 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase CAP PF00188.26 CQR56798.1 - 3.7e-19 69.8 0.7 6.7e-19 69.0 0.7 1.4 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CAP_N PF01213.19 CQR56798.1 - 0.12 11.8 6.0 0.18 11.3 6.0 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal MSP1_C PF07462.11 CQR56798.1 - 6.3 5.4 5.8 7 5.2 5.8 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Med3 PF11593.8 CQR56798.1 - 7 5.7 24.2 11 5.1 24.2 1.3 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal WG_beta_rep PF14903.6 CQR56799.1 - 3.8e-44 148.6 2.7 7.2e-10 39.0 0.1 9.0 9 0 0 9 9 9 6 WG containing repeat DUF3298 PF11738.8 CQR56799.1 - 3.4e-18 66.5 3.8 9e-18 65.1 3.8 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF3298) PdaC PF13739.6 CQR56799.1 - 0.081 13.9 0.0 0.51 11.4 0.0 2.2 1 1 0 1 1 1 0 Deacetylase PdaC BPD_transp_2 PF02653.16 CQR56800.1 - 2.3e-47 161.4 29.7 2.3e-47 161.4 29.7 1.3 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DctQ PF04290.12 CQR56800.1 - 0.91 9.4 12.6 0.82 9.6 4.5 2.7 3 0 0 3 3 3 0 Tripartite ATP-independent periplasmic transporters, DctQ component ABC_tran PF00005.27 CQR56801.1 - 3.1e-48 163.8 0.0 1.2e-24 87.3 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR56801.1 - 7.9e-10 39.0 1.0 0.022 14.6 0.0 3.2 3 0 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 CQR56801.1 - 1.1e-05 24.5 3.1 2.7 6.7 0.1 4.6 4 1 0 4 4 4 4 Predicted ATPase of the ABC class AAA_29 PF13555.6 CQR56801.1 - 0.00087 19.0 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR56801.1 - 0.0011 18.4 0.7 0.54 9.6 0.0 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR56801.1 - 0.0055 17.2 0.1 0.028 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR56801.1 - 0.021 14.8 0.1 0.076 12.9 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 CQR56801.1 - 0.041 14.2 0.4 0.64 10.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain MukB PF04310.12 CQR56801.1 - 0.05 13.4 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_10 PF12846.7 CQR56801.1 - 0.098 11.6 1.6 0.46 9.4 0.4 2.3 2 1 0 2 2 2 0 AAA-like domain AAA_13 PF13166.6 CQR56801.1 - 0.92 8.1 3.8 26 3.3 0.1 3.0 3 0 0 3 3 3 0 AAA domain Peripla_BP_4 PF13407.6 CQR56802.1 - 9.6e-62 208.9 13.0 1.3e-61 208.4 13.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR56802.1 - 3.1e-10 40.0 2.3 7.2e-10 38.7 2.2 1.6 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR56802.1 - 1.8e-07 31.6 0.1 3.4e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_4 PF13407.6 CQR56803.1 - 5.2e-49 167.1 3.8 6.3e-49 166.9 3.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR56803.1 - 4e-16 59.3 0.1 5.3e-16 58.9 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_sub_bind PF04392.12 CQR56803.1 - 1e-05 25.0 1.3 0.0007 18.9 0.6 2.8 3 0 0 3 3 3 1 ABC transporter substrate binding protein ANF_receptor PF01094.28 CQR56803.1 - 0.003 16.7 0.2 0.0071 15.5 0.1 1.7 2 0 0 2 2 2 1 Receptor family ligand binding region AIRC PF00731.20 CQR56803.1 - 0.0055 16.3 0.4 0.8 9.3 0.1 2.3 2 0 0 2 2 2 2 AIR carboxylase SBP_bac_3 PF00497.20 CQR56803.1 - 0.007 15.8 0.3 0.02 14.3 0.3 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 CQR56803.1 - 0.022 14.5 0.4 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 NMT1-like family Eno-Rase_NADH_b PF12242.8 CQR56803.1 - 0.078 12.7 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LapA_dom PF06305.11 CQR56803.1 - 0.12 12.2 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain His_kinase PF06580.13 CQR56804.1 - 2.4e-26 91.8 0.9 7e-26 90.4 0.9 1.8 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR56804.1 - 6.3e-25 88.4 2.0 6.3e-25 88.4 2.0 1.7 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR56804.1 - 1.1e-11 45.0 0.0 2.5e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR56804.1 - 1.3e-08 35.3 0.1 3e-08 34.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3-Cache_2 PF17201.4 CQR56804.1 - 5.2e-05 22.7 2.1 9.7e-05 21.8 0.0 2.4 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain dCache_2 PF08269.11 CQR56804.1 - 0.0014 17.9 0.9 0.0014 17.9 0.9 2.2 2 0 0 2 2 2 1 Cache domain HATPase_c_2 PF13581.6 CQR56804.1 - 0.11 12.5 0.0 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Wzz PF02706.15 CQR56804.1 - 0.28 11.5 2.1 0.84 10.0 0.6 2.3 2 0 0 2 2 2 0 Chain length determinant protein Response_reg PF00072.24 CQR56805.1 - 4.2e-28 97.8 0.2 8.5e-28 96.8 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR56805.1 - 5.2e-20 71.5 0.1 1.3e-19 70.2 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR56805.1 - 1.9e-18 66.1 1.2 1.9e-08 34.2 0.3 2.9 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR56805.1 - 1.8e-10 41.1 0.1 6.2e-10 39.3 0.1 1.9 2 0 0 2 2 2 1 GGDEF-like domain Acetyltransf_1 PF00583.25 CQR56806.1 - 2.3e-17 63.3 0.1 2.8e-17 63.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR56806.1 - 5.8e-13 49.1 0.1 8.1e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR56806.1 - 1.8e-11 44.1 0.0 2.4e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR56806.1 - 1.9e-06 27.8 0.0 3.5e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR56806.1 - 7.2e-06 26.1 0.0 1.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 CQR56806.1 - 8.4e-06 26.0 0.0 1.1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR56806.1 - 0.0015 19.2 0.0 0.0018 19.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR56806.1 - 0.0023 18.0 0.0 0.0036 17.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR56806.1 - 0.012 15.3 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 CQR56806.1 - 0.027 14.2 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ ATP-grasp PF02222.22 CQR56807.1 - 8.7e-59 197.9 0.0 1.7e-58 197.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 CQR56807.1 - 5.4e-06 26.3 0.0 2e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 CQR56807.1 - 1.7e-05 24.4 0.0 3.4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 CQR56807.1 - 4.2e-05 23.6 0.0 8.7e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 CQR56807.1 - 5.6e-05 22.8 0.0 0.00057 19.5 0.0 2.4 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.11 CQR56807.1 - 7.6e-05 22.4 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain RmlD_sub_bind PF04321.17 CQR56807.1 - 0.00083 18.5 0.1 0.0023 17.1 0.1 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 CQR56807.1 - 0.0024 17.4 0.0 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 CQR56807.1 - 0.013 14.8 0.0 0.025 13.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATPgrasp_ST PF14397.6 CQR56807.1 - 0.024 13.9 0.0 0.12 11.6 0.0 2.1 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp Oxidored_nitro PF00148.19 CQR56807.1 - 0.062 12.0 0.1 0.095 11.4 0.1 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase PurK_C PF17769.1 CQR56807.1 - 0.13 12.0 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATPgrasp_N PF18130.1 CQR56807.1 - 0.31 11.6 4.1 0.81 10.3 0.6 3.0 2 1 0 2 2 2 0 ATP-grasp N-terminal domain Dynamin_N PF00350.23 CQR56808.1 - 1.4e-59 200.9 0.0 7.5e-32 110.7 0.0 3.5 3 1 0 3 3 3 2 Dynamin family MMR_HSR1 PF01926.23 CQR56808.1 - 4.6e-17 62.1 0.0 5.5e-08 32.9 0.0 3.8 2 2 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR56808.1 - 9.5e-07 28.5 0.0 0.0067 16.0 0.0 3.5 4 0 0 4 4 4 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 CQR56808.1 - 5.7e-06 26.3 1.8 0.074 13.0 0.0 4.8 6 0 0 6 6 6 2 RsgA GTPase GTP_EFTU PF00009.27 CQR56808.1 - 0.00053 19.6 0.0 2.7 7.5 0.0 3.4 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 CQR56808.1 - 0.081 12.2 0.1 16 4.8 0.0 3.8 5 0 0 5 5 5 0 AIG1 family Septin PF00735.18 CQR56808.1 - 0.14 11.4 0.0 16 4.6 0.0 2.3 2 0 0 2 2 2 0 Septin IIGP PF05049.13 CQR56808.1 - 0.16 11.0 0.1 53 2.7 0.0 3.5 4 0 0 4 4 4 0 Interferon-inducible GTPase (IIGP) ABC_tran PF00005.27 CQR56808.1 - 0.18 12.3 0.1 26 5.3 0.0 3.0 2 0 0 2 2 2 0 ABC transporter AHSA1 PF08327.11 CQR56809.1 - 4.8e-14 52.6 0.2 5.6e-14 52.4 0.2 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 CQR56809.1 - 0.00037 20.8 0.1 0.0005 20.4 0.1 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_20 PF12840.7 CQR56810.1 - 8.8e-12 44.9 0.1 1.3e-11 44.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR56810.1 - 2.7e-09 36.8 0.0 4.2e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR56810.1 - 6.2e-05 22.8 0.2 0.00011 22.1 0.2 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 CQR56810.1 - 7.9e-05 22.9 0.0 0.00011 22.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 CQR56810.1 - 9.5e-05 22.3 0.1 0.00016 21.6 0.1 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 CQR56810.1 - 0.00051 19.9 0.0 0.00074 19.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 CQR56810.1 - 0.014 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 CQR56810.1 - 0.022 14.9 0.0 0.037 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 CQR56810.1 - 0.063 13.1 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2513 PF10711.9 CQR56810.1 - 0.07 13.4 0.0 0.095 13.0 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) RP-C PF03428.13 CQR56810.1 - 0.072 12.7 0.1 0.09 12.4 0.1 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_29 PF13551.6 CQR56810.1 - 0.081 13.0 0.2 0.12 12.5 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn helix MarR PF01047.22 CQR56810.1 - 0.087 12.8 0.0 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 MarR family GntR PF00392.21 CQR56810.1 - 0.11 12.2 0.1 0.21 11.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_40 PF14493.6 CQR56810.1 - 0.14 12.6 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 CQR56810.1 - 0.18 12.1 0.0 0.85 9.9 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like DSX_dimer PF08828.10 CQR56811.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR56811.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR56812.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR56812.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR56812.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR56812.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) HhH-GPD PF00730.25 CQR56814.1 - 5.8e-23 81.4 0.0 7.8e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 CQR56814.1 - 1.2e-06 28.1 0.0 2.5e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 CQR56814.1 - 1.1e-05 25.6 4.2 2.4e-05 24.5 4.2 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HTH_9 PF08221.11 CQR56814.1 - 0.013 15.5 0.2 2.2 8.4 0.0 3.1 3 0 0 3 3 3 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF3349 PF11829.8 CQR56814.1 - 0.068 13.9 0.1 19 6.1 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3349) SLH PF00395.20 CQR56815.1 - 8.7e-19 67.3 1.2 6.3e-09 35.7 0.1 3.3 3 0 0 3 3 3 2 S-layer homology domain CusF_Ec PF11604.8 CQR56815.1 - 2.1e-07 30.8 1.9 0.00098 19.0 0.1 5.4 6 0 0 6 6 6 1 Copper binding periplasmic protein CusF LSM14 PF12701.7 CQR56815.1 - 0.0094 16.0 1.2 0.37 10.9 0.0 3.4 4 0 0 4 4 4 1 Scd6-like Sm domain DUF1344 PF07076.11 CQR56815.1 - 1.6 8.7 7.8 12 5.9 0.1 5.5 7 0 0 7 7 7 0 Protein of unknown function (DUF1344) Germane PF10646.9 CQR56816.1 - 1.2e-08 35.7 0.3 2.3e-08 34.7 0.1 1.6 2 0 0 2 2 2 1 Sporulation and spore germination Mucin PF01456.17 CQR56816.1 - 0.00038 20.5 4.0 0.0005 20.1 4.0 1.2 1 0 0 1 1 1 1 Mucin-like glycoprotein Nfu_N PF08712.11 CQR56816.1 - 0.052 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal Amidase_3 PF01520.18 CQR56817.1 - 4.6e-53 179.9 0.4 7.2e-53 179.3 0.4 1.3 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase Cu_amine_oxidN1 PF07833.11 CQR56817.1 - 1.4e-29 102.4 3.2 2.2e-29 101.8 1.4 2.3 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain AMIN PF11741.8 CQR56817.1 - 1.2e-09 38.2 0.2 4.1e-09 36.4 0.2 2.0 1 0 0 1 1 1 1 AMIN domain HAD_SAK_1 PF10307.9 CQR56817.1 - 0.078 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 HAD domain family 1 in Swiss Army Knife RNA repair proteins Amidase_3 PF01520.18 CQR56818.1 - 1.2e-43 149.2 0.1 2.3e-43 148.3 0.1 1.5 2 0 0 2 2 2 1 N-acetylmuramoyl-L-alanine amidase Cu_amine_oxidN1 PF07833.11 CQR56818.1 - 6.7e-27 93.8 0.4 1.4e-26 92.8 0.2 1.7 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain AMIN PF11741.8 CQR56818.1 - 2.9e-07 30.5 0.0 1.3e-06 28.4 0.0 2.1 1 0 0 1 1 1 1 AMIN domain P22_AR_N PF10547.9 CQR56818.1 - 0.014 15.7 0.1 0.081 13.3 0.0 2.0 1 1 1 2 2 2 0 P22_AR N-terminal domain Aconitase_C PF00694.19 CQR56819.1 - 4e-38 130.7 0.0 5.6e-38 130.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 CQR56819.1 - 0.17 11.5 0.0 2.8 7.5 0.0 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Aconitase PF00330.20 CQR56820.1 - 6.2e-162 539.8 0.2 7e-162 539.6 0.2 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) LysR_substrate PF03466.20 CQR56822.1 - 2.3e-53 180.7 1.3 3e-53 180.3 1.3 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR56822.1 - 3.8e-20 71.6 0.9 3.8e-20 71.6 0.9 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR56822.1 - 0.0081 15.9 0.2 0.022 14.6 0.0 1.8 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.20 CQR56822.1 - 0.0095 15.8 0.1 0.023 14.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Ribosomal_L29 PF00831.23 CQR56822.1 - 0.03 14.3 0.8 0.23 11.4 0.3 2.3 2 0 0 2 2 2 0 Ribosomal L29 protein Caerin_1 PF07440.12 CQR56822.1 - 0.052 13.6 0.8 0.12 12.5 0.8 1.6 1 0 0 1 1 1 0 Caerin 1 protein EcoRI PF02963.16 CQR56822.1 - 0.063 12.3 0.0 0.65 9.0 0.0 2.0 2 0 0 2 2 2 0 Restriction endonuclease EcoRI DUF1778 PF08681.11 CQR56823.1 - 0.02 14.8 0.4 0.025 14.5 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) AA_kinase PF00696.28 CQR56824.1 - 7.7e-44 150.1 0.1 1e-43 149.7 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 CQR56824.1 - 3.4e-20 71.8 0.0 1.1e-19 70.1 0.0 2.0 1 0 0 1 1 1 1 PUA domain PUA_3 PF17785.1 CQR56824.1 - 0.00045 20.0 0.1 0.0025 17.6 0.0 2.2 2 0 0 2 2 2 1 PUA-like domain Aldedh PF00171.22 CQR56825.1 - 1.2e-12 47.1 0.3 2.4e-08 33.0 0.0 2.2 1 1 0 2 2 2 2 Aldehyde dehydrogenase family P5CR_dimer PF14748.6 CQR56826.1 - 8.6e-37 125.5 1.3 2.4e-36 124.1 1.3 1.8 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 CQR56826.1 - 4.8e-15 55.9 0.0 1.4e-14 54.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 CQR56826.1 - 0.0011 19.1 0.0 0.0029 17.7 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 CQR56826.1 - 0.0097 15.6 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Malic_M PF03949.15 CQR56826.1 - 0.042 13.1 0.0 3.4 6.9 0.0 2.3 2 0 0 2 2 2 0 Malic enzyme, NAD binding domain DnaB_2 PF07261.11 CQR56827.1 - 1.2e-25 89.1 0.0 2.6e-25 87.9 0.0 1.6 1 0 0 1 1 1 1 Replication initiation and membrane attachment HTH_36 PF13730.6 CQR56827.1 - 1.8e-05 24.6 0.0 3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HemN_C PF06969.16 CQR56827.1 - 0.032 14.3 0.6 0.098 12.7 0.1 1.9 3 0 0 3 3 3 0 HemN C-terminal domain TrmB PF01978.19 CQR56827.1 - 0.17 11.8 0.0 0.41 10.6 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB tRNA-synt_2 PF00152.20 CQR56828.1 - 3.1e-87 292.6 0.0 3.9e-87 292.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 CQR56828.1 - 2.1e-13 50.0 0.3 3.6e-13 49.3 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain LisH_TPL PF17814.1 CQR56828.1 - 0.019 14.6 0.0 0.06 13.0 0.0 1.8 1 0 0 1 1 1 0 LisH-like dimerisation domain Acetate_kinase PF00871.17 CQR56829.1 - 6e-156 519.0 2.4 6.8e-156 518.9 2.4 1.0 1 0 0 1 1 1 1 Acetokinase family 3HCDH_N PF02737.18 CQR56830.1 - 1.3e-56 191.3 1.4 1.7e-56 191.0 1.4 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 CQR56830.1 - 1.3e-29 102.6 0.2 4.5e-29 100.9 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 CQR56830.1 - 5.6e-06 26.6 1.6 3.1e-05 24.2 1.1 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR56830.1 - 7.1e-06 26.5 0.1 2.1e-05 25.0 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 CQR56830.1 - 0.00035 21.1 0.4 0.0018 18.8 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 CQR56830.1 - 0.00037 20.7 0.6 0.0065 16.7 0.6 2.3 1 1 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 CQR56830.1 - 0.00065 20.0 0.0 0.023 14.9 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 CQR56830.1 - 0.00087 19.4 0.4 0.0017 18.4 0.3 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 CQR56830.1 - 0.002 17.5 0.1 0.0034 16.8 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 CQR56830.1 - 0.002 17.8 0.2 0.0041 16.8 0.2 1.6 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 CQR56830.1 - 0.0021 18.4 0.0 0.0039 17.6 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 CQR56830.1 - 0.0022 17.3 0.2 0.0034 16.7 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 CQR56830.1 - 0.011 15.8 1.0 0.025 14.6 1.0 1.9 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 CQR56830.1 - 0.013 14.7 0.1 0.031 13.5 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 CQR56830.1 - 0.02 14.5 0.6 0.045 13.3 0.6 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 CQR56830.1 - 0.038 13.6 0.2 0.075 12.6 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase adh_short PF00106.25 CQR56830.1 - 0.048 13.1 0.1 0.077 12.4 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase TBCC PF07986.12 CQR56830.1 - 0.061 13.1 0.1 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 Tubulin binding cofactor C AlaDh_PNT_C PF01262.21 CQR56830.1 - 0.1 11.9 0.1 0.2 10.9 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DFP PF04127.15 CQR56830.1 - 0.12 12.2 0.1 0.24 11.2 0.1 1.4 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_binding_8 PF13450.6 CQR56830.1 - 0.14 12.4 0.2 0.36 11.1 0.2 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR56830.1 - 0.14 11.2 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain L31 PF09784.9 CQR56830.1 - 0.18 12.3 0.1 0.46 10.9 0.0 1.6 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 AAA PF00004.29 CQR56831.1 - 3.4e-39 134.3 0.0 6.7e-39 133.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Peptidase_M41 PF01434.18 CQR56831.1 - 4.7e-29 101.6 2.2 5.7e-27 94.8 2.2 2.3 1 1 0 1 1 1 1 Peptidase family M41 AAA_lid_3 PF17862.1 CQR56831.1 - 5.9e-11 42.0 0.6 1.3e-10 40.9 0.1 1.9 2 0 0 2 2 1 1 AAA+ lid domain AAA_2 PF07724.14 CQR56831.1 - 1e-05 25.8 0.0 3.1e-05 24.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 CQR56831.1 - 1.3e-05 25.2 0.0 4.8e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 CQR56831.1 - 4.8e-05 23.2 0.2 0.00086 19.1 0.2 2.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 CQR56831.1 - 6.8e-05 23.3 0.2 0.0003 21.2 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR56831.1 - 0.0008 19.7 0.3 0.0069 16.7 0.3 2.2 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 CQR56831.1 - 0.0025 17.0 0.0 0.0064 15.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_30 PF13604.6 CQR56831.1 - 0.0031 17.3 0.1 0.0077 16.0 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR56831.1 - 0.0034 17.9 0.0 0.013 16.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 CQR56831.1 - 0.0038 16.6 2.4 0.01 15.2 0.1 2.6 2 1 1 3 3 3 1 KaiC TIP49 PF06068.13 CQR56831.1 - 0.009 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain RNA_helicase PF00910.22 CQR56831.1 - 0.0098 16.3 0.0 0.021 15.2 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.6 CQR56831.1 - 0.013 15.3 0.0 0.18 11.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 CQR56831.1 - 0.013 14.9 0.0 0.025 14.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 CQR56831.1 - 0.021 14.6 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.6 CQR56831.1 - 0.023 14.7 0.0 0.063 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR56831.1 - 0.028 14.6 0.4 0.097 12.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 CQR56831.1 - 0.032 14.6 0.0 0.11 12.9 0.0 2.1 1 0 0 1 1 1 0 AAA domain Peptidase_M50B PF13398.6 CQR56831.1 - 0.044 13.4 4.3 0.44 10.2 0.0 2.2 2 0 0 2 2 2 0 Peptidase M50B-like Sigma54_activat PF00158.26 CQR56831.1 - 0.048 13.4 0.1 0.16 11.6 0.1 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 CQR56831.1 - 0.048 13.2 0.1 0.15 11.5 0.1 1.9 1 1 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 CQR56831.1 - 0.052 13.5 0.6 0.95 9.3 0.1 2.7 1 1 1 2 2 2 0 NTPase AAA_11 PF13086.6 CQR56831.1 - 0.053 13.3 0.1 0.11 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 CQR56831.1 - 5.1 7.4 7.1 0.77 10.1 0.4 2.7 2 2 0 3 3 2 0 AAA domain PBSX_XtrA PF17356.2 CQR56832.1 - 0.041 13.8 0.0 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA DUF4307 PF14155.6 CQR56832.1 - 0.061 13.2 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) HMA PF00403.26 CQR56832.1 - 0.064 13.7 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Heavy-metal-associated domain DUF5590 PF17881.1 CQR56833.1 - 1.2e-11 44.5 0.7 2.6e-11 43.4 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF5590) YqfD PF06898.11 CQR56833.1 - 0.18 10.6 0.7 0.32 9.8 0.7 1.3 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Amidohydro_1 PF01979.20 CQR56834.1 - 1.7e-73 247.9 0.4 2.1e-73 247.6 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR56834.1 - 3.6e-18 66.3 2.8 2.5e-17 63.5 0.7 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 CQR56834.1 - 0.0083 15.5 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase CoA_binding PF02629.19 CQR56835.1 - 1e-21 77.4 0.1 1.6e-21 76.8 0.1 1.3 1 0 0 1 1 1 1 CoA binding domain Put_DNA-bind_N PF06971.13 CQR56835.1 - 3.2e-21 75.1 0.3 7.5e-21 73.9 0.3 1.7 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus GFO_IDH_MocA PF01408.22 CQR56835.1 - 7.7e-05 23.5 0.0 0.00011 23.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_3 PF13727.6 CQR56835.1 - 0.052 13.6 0.0 0.11 12.6 0.0 1.5 1 1 1 2 2 2 0 CoA-binding domain CENP-T_C PF15511.6 CQR56835.1 - 0.087 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T histone fold Helicase_C_2 PF13307.6 CQR56837.1 - 2.8e-37 128.5 0.0 6e-37 127.4 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain RNase_T PF00929.24 CQR56837.1 - 9.4e-27 94.6 0.0 1.6e-26 93.9 0.0 1.4 1 0 0 1 1 1 1 Exonuclease DEAD PF00270.29 CQR56837.1 - 1.9e-11 44.0 0.1 0.00072 19.4 0.0 4.1 4 0 0 4 4 4 2 DEAD/DEAH box helicase ResIII PF04851.15 CQR56837.1 - 4.3e-10 39.9 0.0 3e-09 37.1 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 CQR56837.1 - 0.00067 20.0 0.0 0.0029 17.9 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF5051 PF16473.5 CQR56837.1 - 0.0017 18.4 0.0 0.035 14.1 0.0 2.5 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like DEAD_2 PF06733.15 CQR56837.1 - 0.061 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 DEAD_2 TPR_2 PF07719.17 CQR56838.1 - 2.3e-10 39.8 0.8 0.005 16.9 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 CQR56838.1 - 2.7e-09 36.5 1.2 0.02 14.7 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 CQR56838.1 - 8.6e-06 26.3 0.2 0.0051 17.4 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 CQR56838.1 - 8.7e-06 26.0 2.6 0.0034 17.9 0.0 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 CQR56838.1 - 5.2e-05 23.7 0.9 0.002 18.6 0.1 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 CQR56838.1 - 0.00013 22.2 3.0 0.00056 20.1 2.6 2.0 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 CQR56838.1 - 0.00094 19.8 0.8 0.38 11.7 0.0 3.6 2 1 1 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 CQR56838.1 - 0.0032 17.7 3.2 0.91 10.0 0.3 3.4 3 1 0 3 3 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 CQR56838.1 - 0.045 13.6 0.4 0.44 10.5 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 CQR56838.1 - 0.049 13.7 0.3 3.3 8.0 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_20 PF14561.6 CQR56838.1 - 0.12 12.7 0.1 0.44 10.9 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat Asp_decarbox PF02261.16 CQR56839.1 - 4.3e-56 187.8 0.1 4.9e-56 187.6 0.1 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase Pantoate_ligase PF02569.15 CQR56840.1 - 2e-101 338.7 0.0 2.2e-101 338.5 0.0 1.0 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase Pantoate_transf PF02548.15 CQR56841.1 - 1.9e-109 365.0 0.4 2.2e-109 364.8 0.4 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 CQR56841.1 - 3.1e-05 23.5 0.0 0.0015 18.0 0.0 2.2 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Asp_Glu_race PF01177.22 CQR56841.1 - 0.021 14.7 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase NanE PF04131.14 CQR56841.1 - 0.097 11.8 0.2 0.89 8.7 0.1 2.3 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase BPL_LplA_LipB PF03099.19 CQR56842.1 - 2.6e-19 69.4 0.0 3.7e-19 68.9 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 CQR56842.1 - 6.9e-09 35.5 0.6 1.4e-08 34.5 0.6 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 CQR56842.1 - 9.8e-06 25.2 0.0 1.5e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF5429 PF17494.2 CQR56842.1 - 0.17 11.9 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5429) PolyA_pol PF01743.20 CQR56843.1 - 7.5e-32 110.4 0.0 1.2e-31 109.8 0.0 1.3 1 0 0 1 1 1 1 Poly A polymerase head domain tRNA_NucTran2_2 PF13735.6 CQR56843.1 - 5.3e-21 75.2 0.0 2.7e-14 53.4 0.0 2.2 2 0 0 2 2 2 2 tRNA nucleotidyltransferase domain 2 putative PolyA_pol_RNAbd PF12627.7 CQR56843.1 - 2.8e-10 39.8 0.0 5.3e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Probable RNA and SrmB- binding site of polymerase A Glycos_transf_1 PF00534.20 CQR56844.1 - 3.5e-35 121.1 0.0 6e-35 120.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR56844.1 - 7.7e-31 107.3 0.0 1.5e-30 106.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR56844.1 - 1.7e-22 80.2 0.1 2.5e-22 79.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 CQR56844.1 - 6.1e-14 52.2 0.1 1.1e-13 51.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 CQR56844.1 - 5.8e-11 43.1 0.0 1e-10 42.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 CQR56844.1 - 2.9e-08 34.0 0.0 5.5e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 CQR56844.1 - 1.5e-06 28.1 1.2 0.06 13.0 0.3 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain Pyr_redox PF00070.27 CQR56844.1 - 0.082 13.5 0.1 0.42 11.2 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PIG-L PF02585.17 CQR56845.1 - 1.9e-21 77.0 0.1 2.8e-21 76.5 0.1 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase MGS PF02142.22 CQR56846.1 - 4.4e-15 55.6 0.0 6.4e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 MGS-like domain DapB_N PF01113.20 CQR56847.1 - 3e-37 127.5 0.4 5.4e-37 126.7 0.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus DapB_C PF05173.14 CQR56847.1 - 2e-28 98.8 0.0 3.1e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus Semialdhyde_dh PF01118.24 CQR56847.1 - 0.039 14.4 0.1 0.071 13.5 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 CQR56847.1 - 0.13 13.1 0.0 0.26 12.1 0.0 1.5 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TPR_19 PF14559.6 CQR56848.1 - 6.4e-17 61.8 3.3 9.5e-08 32.5 0.1 2.8 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 CQR56848.1 - 9.7e-13 47.8 5.7 0.00069 20.2 0.1 4.5 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 CQR56848.1 - 1.1e-12 47.0 5.9 0.016 15.3 0.0 5.2 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 CQR56848.1 - 3.2e-12 45.9 0.2 0.0002 21.0 0.0 4.3 2 2 2 4 4 4 2 TPR repeat TPR_1 PF00515.28 CQR56848.1 - 6.9e-10 38.3 2.5 0.005 16.6 0.0 4.8 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.6 CQR56848.1 - 1.3e-09 38.5 1.7 0.00045 20.8 0.1 2.8 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 CQR56848.1 - 4.5e-09 36.1 0.0 0.0021 18.3 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 CQR56848.1 - 1.3e-08 34.3 0.2 0.018 15.0 0.1 3.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 CQR56848.1 - 2.9e-06 27.5 0.1 0.0099 16.5 0.0 3.1 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR56848.1 - 3.5e-06 26.8 0.3 0.54 10.6 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR56848.1 - 6.2e-06 26.4 3.8 0.032 14.5 0.1 3.7 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_15 PF13429.6 CQR56848.1 - 2.6e-05 23.6 0.5 0.011 14.9 0.0 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_20 PF14561.6 CQR56848.1 - 3.2e-05 24.2 1.9 0.0036 17.6 0.3 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR56848.1 - 4.9e-05 23.5 1.3 0.025 14.8 0.3 2.3 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 CQR56848.1 - 0.00033 20.7 0.9 0.0071 16.4 0.1 2.6 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 CQR56848.1 - 0.0011 18.7 1.9 0.33 10.9 0.1 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 CQR56848.1 - 0.0059 16.7 3.2 0.16 12.2 0.4 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat BTAD PF03704.17 CQR56848.1 - 0.013 16.0 2.1 0.1 13.0 0.3 2.4 1 1 1 2 2 2 0 Bacterial transcriptional activator domain TPR_4 PF07721.14 CQR56848.1 - 0.09 13.4 0.2 21 6.1 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat MIT PF04212.18 CQR56848.1 - 0.39 10.8 4.4 6.9 6.8 0.0 3.8 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain MazG PF03819.17 CQR56849.1 - 6.5e-18 64.7 0.0 9e-18 64.2 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 CQR56849.1 - 0.0018 18.5 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 CQR56849.1 - 0.0044 17.4 0.0 0.0056 17.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase YitT_membrane PF02588.15 CQR56850.1 - 3.2e-61 206.3 17.1 3.2e-61 206.3 17.1 1.3 2 0 0 2 2 2 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2179 PF10035.9 CQR56850.1 - 2.2e-23 81.7 0.9 2e-22 78.6 0.1 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2179) SVS_QK PF10578.9 CQR56851.1 - 0.2 12.3 2.1 23 5.9 0.3 3.6 3 0 0 3 3 3 0 Seminal vesicle protein repeat PA-IL PF07828.12 CQR56851.1 - 0.35 10.9 1.3 6.7 6.8 0.1 2.2 1 1 0 2 2 2 0 PA-IL-like protein TPD52 PF04201.15 CQR56851.1 - 0.55 9.8 3.2 23 4.6 0.3 2.8 1 1 2 3 3 3 0 Tumour protein D52 family Spore_YpjB PF09577.10 CQR56852.1 - 7.3e-37 127.4 0.0 8.8e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 Sporulation protein YpjB (SpoYpjB) DUF4363 PF14276.6 CQR56852.1 - 0.0059 16.7 0.3 0.59 10.3 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4363) DUF1405 PF07187.11 CQR56853.1 - 1.5e-50 171.2 7.8 1.9e-50 170.9 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Cytochrome_CBB3 PF13442.6 CQR56854.1 - 2.2e-13 50.3 0.1 3.9e-13 49.5 0.1 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 CQR56854.1 - 3.4e-09 37.7 0.6 7.6e-09 36.6 0.1 1.8 2 0 0 2 2 2 1 Cytochrome c Cytochrom_B_C PF00032.17 CQR56854.1 - 5.3e-07 29.9 0.1 5.3e-07 29.9 0.1 1.7 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD MAP17 PF15807.5 CQR56854.1 - 0.0023 18.2 1.5 0.24 11.7 0.0 2.2 2 0 0 2 2 2 2 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 Cytochrome_B PF00033.19 CQR56855.1 - 9.4e-53 178.8 16.5 1.1e-52 178.6 16.5 1.0 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 CQR56855.1 - 1.5e-38 132.5 9.3 1.5e-38 132.5 9.3 1.6 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.20 CQR56855.1 - 1e-06 28.5 20.7 4.6e-05 23.1 6.8 2.1 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 DUF373 PF04123.13 CQR56855.1 - 1.4 8.3 6.4 1.1 8.7 5.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Rieske PF00355.26 CQR56856.1 - 2.7e-12 46.5 0.0 5.3e-12 45.5 0.0 1.5 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain CytB6-F_Fe-S PF08802.10 CQR56856.1 - 5.8e-05 23.0 0.6 0.00012 22.0 0.6 1.4 1 0 0 1 1 1 1 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.9 CQR56856.1 - 0.0053 16.5 0.1 0.012 15.4 0.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 CQR56856.1 - 0.0085 15.4 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF2487 PF10673.9 CQR56857.1 - 7e-12 45.6 0.0 7.5e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2487) IDEAL PF08858.10 CQR56858.1 - 2.3e-13 49.7 0.1 2.9e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 IDEAL domain Ploopntkinase3 PF18751.1 CQR56858.1 - 0.063 13.2 0.0 0.069 13.1 0.0 1.0 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 SSXRD PF09514.10 CQR56858.1 - 0.069 12.7 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 SSXRD motif Hexapep PF00132.24 CQR56859.1 - 8.8e-17 60.1 8.2 5.8e-09 35.3 1.4 4.1 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 CQR56859.1 - 0.00022 20.9 16.7 0.00078 19.1 4.4 3.1 2 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase His_Phos_1 PF00300.22 CQR56861.1 - 1.9e-46 158.2 0.0 2.2e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) zf-HC2 PF13490.6 CQR56862.1 - 0.00028 21.1 0.9 0.00073 19.7 0.2 2.1 2 0 0 2 2 2 1 Putative zinc-finger DUF4381 PF14316.6 CQR56862.1 - 0.055 13.7 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF5562 PF17717.1 CQR56862.1 - 0.15 12.0 0.4 1.3 9.0 0.4 2.0 1 1 0 1 1 1 0 Family of unknown function (DUF5562) FixP_N PF14715.6 CQR56862.1 - 2.3 8.0 5.1 3.8 7.3 1.0 2.3 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP Sigma70_r2 PF04542.14 CQR56863.1 - 3.3e-18 65.2 0.3 5.2e-18 64.6 0.3 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR56863.1 - 4e-18 64.8 0.3 7.7e-18 63.9 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR56863.1 - 2.2e-09 36.7 0.1 5e-09 35.5 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR56863.1 - 3.6e-05 23.7 1.4 6.3e-05 22.9 1.4 1.3 1 1 0 1 1 1 1 ECF sigma factor CSTF_C PF14304.6 CQR56863.1 - 0.032 13.8 0.3 0.09 12.4 0.3 1.7 1 0 0 1 1 1 0 Transcription termination and cleavage factor C-terminal GCD14 PF08704.10 CQR56863.1 - 0.11 12.1 0.2 0.33 10.6 0.1 1.7 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit WzyE PF06899.11 CQR56863.1 - 0.15 11.0 0.0 0.26 10.2 0.0 1.4 1 0 0 1 1 1 0 WzyE protein, O-antigen assembly polymerase TetR_N PF00440.23 CQR56864.1 - 1.5e-16 59.9 0.0 2.9e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR56864.1 - 0.00048 20.3 0.0 0.0014 18.8 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HAD_2 PF13419.6 CQR56864.1 - 0.098 12.7 0.0 0.23 11.6 0.0 1.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Put_DNA-bind_N PF06971.13 CQR56864.1 - 0.1 12.6 0.3 0.65 10.0 0.0 2.3 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus ApbA PF02558.16 CQR56865.1 - 3.2e-13 49.6 0.0 5.4e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 CQR56865.1 - 0.0006 20.3 0.0 0.0017 18.8 0.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 CQR56865.1 - 0.0033 16.9 0.1 0.011 15.2 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 CQR56865.1 - 0.0081 16.7 0.0 0.033 14.8 0.0 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 CQR56865.1 - 0.0097 15.2 0.1 0.016 14.5 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Cag12 PF13117.6 CQR56865.1 - 0.013 16.0 0.2 0.047 14.2 0.0 2.1 2 1 0 2 2 2 0 Cag pathogenicity island protein Cag12 3HCDH_N PF02737.18 CQR56865.1 - 0.022 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 CQR56865.1 - 0.025 14.0 0.1 0.052 12.9 0.1 1.5 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_2 PF03446.15 CQR56865.1 - 0.026 14.7 0.0 0.053 13.7 0.0 1.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 CQR56865.1 - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA_C PF08546.11 CQR56865.1 - 0.15 12.2 0.0 0.76 10.0 0.0 2.1 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal TrkA_N PF02254.18 CQR56865.1 - 0.17 12.1 0.0 0.37 11.1 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain PDH PF02153.17 CQR56866.1 - 3.3e-65 219.6 0.0 4.2e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 CQR56866.1 - 1.9e-08 34.8 0.0 4.8e-08 33.5 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ACT PF01842.25 CQR56866.1 - 2.7e-08 33.5 0.1 1.3e-07 31.2 0.1 2.1 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.15 CQR56866.1 - 1.3e-07 31.9 0.0 2.4e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 CQR56866.1 - 0.00064 19.1 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 CQR56866.1 - 0.0038 17.1 0.0 0.007 16.2 0.0 1.3 1 0 0 1 1 1 1 Rossmann-like domain ACT_4 PF13291.6 CQR56866.1 - 0.005 17.4 0.0 0.013 16.1 0.0 1.7 1 0 0 1 1 1 1 ACT domain NAD_Gly3P_dh_N PF01210.23 CQR56866.1 - 0.017 15.1 0.1 0.46 10.4 0.1 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HSM3_N PF18795.1 CQR56866.1 - 0.022 14.2 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain Semialdhyde_dh PF01118.24 CQR56866.1 - 0.038 14.4 0.0 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 CQR56866.1 - 0.22 11.1 1.4 14 5.2 1.0 2.2 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aminotran_1_2 PF00155.21 CQR56867.1 - 9.3e-55 186.3 0.0 1.1e-54 186.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 CQR56867.1 - 5.9e-08 32.1 0.0 1.9e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 CQR56867.1 - 0.00026 19.7 0.0 0.0004 19.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 CQR56867.1 - 0.11 11.7 0.1 0.27 10.5 0.0 1.6 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Trp_syntA PF00290.20 CQR56868.1 - 1.1e-92 309.6 0.0 1.3e-92 309.3 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 CQR56868.1 - 0.00092 18.7 0.2 0.0056 16.2 0.0 2.0 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.21 CQR56868.1 - 0.00098 18.6 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein BtpA PF03437.15 CQR56868.1 - 0.0054 16.2 0.1 0.0081 15.6 0.1 1.2 1 0 0 1 1 1 1 BtpA family PALP PF00291.25 CQR56869.1 - 6.1e-48 163.7 0.7 7.3e-48 163.5 0.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Gmad2 PF10648.9 CQR56869.1 - 0.068 13.4 0.5 0.18 12.1 0.0 1.9 2 0 0 2 2 2 0 Immunoglobulin-like domain of bacterial spore germination PRAI PF00697.22 CQR56870.1 - 2e-44 151.7 0.0 2.4e-44 151.5 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 4HFCP_synth PF04476.13 CQR56870.1 - 0.07 12.8 0.0 0.13 12.0 0.0 1.4 2 0 0 2 2 2 0 4-HFC-P synthase TMP-TENI PF02581.17 CQR56870.1 - 0.1 11.9 0.0 0.43 9.9 0.0 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase IGPS PF00218.21 CQR56871.1 - 1.1e-87 293.4 0.0 1.2e-87 293.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 CQR56871.1 - 1.5e-07 31.2 0.0 0.00056 19.4 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 CQR56871.1 - 0.00044 19.4 0.0 0.016 14.3 0.0 2.7 1 1 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 CQR56871.1 - 0.0016 18.0 0.0 0.1 12.0 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 CQR56871.1 - 0.0018 17.5 0.0 0.035 13.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF561) ThiG PF05690.14 CQR56871.1 - 0.025 13.9 0.1 6.9 5.9 0.0 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Glycos_transf_3 PF00591.21 CQR56872.1 - 4.1e-95 318.2 1.9 5.5e-95 317.8 1.9 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 CQR56872.1 - 1.4e-19 69.7 1.6 1.7e-18 66.2 0.7 2.9 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.18 CQR56873.1 - 1.2e-102 343.0 0.0 1.7e-102 342.4 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 CQR56873.1 - 2.2e-40 138.1 0.0 2.3e-39 134.8 0.0 2.5 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region CM_1 PF07736.11 CQR56874.1 - 9.9e-47 158.2 0.1 1.1e-46 158.0 0.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type I DHQ_synthase PF01761.20 CQR56875.1 - 1.4e-96 322.7 0.0 1.7e-96 322.4 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 CQR56875.1 - 2.2e-11 43.9 0.9 3e-11 43.5 0.0 1.7 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 CQR56875.1 - 7.9e-10 38.1 5.3 6.6e-09 35.0 5.3 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Chorismate_synt PF01264.21 CQR56876.1 - 2.8e-121 404.3 0.2 3.1e-121 404.1 0.2 1.0 1 0 0 1 1 1 1 Chorismate synthase Phage_Gp111 PF07410.11 CQR56876.1 - 0.012 16.1 0.7 0.022 15.2 0.1 1.7 2 0 0 2 2 2 0 Streptococcus thermophilus bacteriophage Gp111 protein CheR PF01739.18 CQR56877.1 - 8.2e-57 191.8 0.0 1e-56 191.5 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 CQR56877.1 - 2.6e-13 49.5 0.0 5.3e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 CQR56877.1 - 3.4e-06 27.7 0.1 0.00034 21.3 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR56877.1 - 1.4e-05 25.7 0.0 0.00083 20.0 0.0 2.7 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR56877.1 - 0.0019 18.8 0.0 0.014 16.0 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56877.1 - 0.0044 16.8 0.0 0.039 13.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 CQR56877.1 - 0.085 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) TehB PF03848.14 CQR56877.1 - 0.1 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB NDK PF00334.19 CQR56878.1 - 8.9e-54 181.2 0.0 1e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase polyprenyl_synt PF00348.17 CQR56879.1 - 5.4e-66 222.3 0.0 6.8e-66 221.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase VitK2_biosynth PF02621.14 CQR56880.1 - 8.1e-66 222.3 0.0 9.2e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Prok-RING_2 PF14445.6 CQR56880.1 - 0.063 13.4 0.1 0.15 12.2 0.1 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 Flavoprotein PF02441.19 CQR56881.1 - 1.5e-24 86.6 0.0 1.9e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein DFP PF04127.15 CQR56881.1 - 0.065 13.1 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Glyco_transf_4 PF13439.6 CQR56881.1 - 0.1 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 adh_short PF00106.25 CQR56881.1 - 0.18 11.2 0.1 0.34 10.3 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase UbiA PF01040.18 CQR56882.1 - 1.5e-50 171.9 26.3 1.9e-50 171.5 26.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Flavodoxin_4 PF12682.7 CQR56882.1 - 0.088 12.5 0.2 0.19 11.4 0.2 1.5 1 0 0 1 1 1 0 Flavodoxin Ubie_methyltran PF01209.18 CQR56883.1 - 3.3e-85 285.1 0.0 3.8e-85 284.9 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 CQR56883.1 - 1.9e-21 76.6 0.0 2.9e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR56883.1 - 4.8e-20 72.0 0.0 7.3e-20 71.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56883.1 - 1.7e-15 57.2 0.0 2.3e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR56883.1 - 7.1e-12 45.5 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR56883.1 - 1.1e-11 45.3 0.0 1.7e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 CQR56883.1 - 0.00012 22.0 0.0 0.00018 21.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 CQR56883.1 - 0.00049 20.3 0.0 0.0022 18.2 0.0 2.0 2 0 0 2 2 2 1 FtsJ-like methyltransferase MTS PF05175.14 CQR56883.1 - 0.0022 17.6 0.0 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 CQR56883.1 - 0.012 15.2 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.17 CQR56883.1 - 0.014 14.9 0.0 0.039 13.4 0.0 1.7 1 1 1 2 2 2 0 Putative methyltransferase UPF0020 PF01170.18 CQR56883.1 - 0.016 14.9 0.0 0.16 11.6 0.0 2.5 3 1 0 3 3 3 0 Putative RNA methylase family UPF0020 TrmK PF04816.12 CQR56883.1 - 0.04 13.4 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase CMAS PF02353.20 CQR56883.1 - 0.043 13.1 0.1 0.07 12.4 0.1 1.5 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 CQR56883.1 - 0.1 12.4 0.1 0.45 10.3 0.1 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase HEPPP_synt_1 PF07307.11 CQR56884.1 - 7.4e-28 97.6 0.0 9.3e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 TrpBP PF02081.15 CQR56886.1 - 6.9e-41 137.9 0.4 8.7e-41 137.6 0.4 1.1 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein Bac_DNA_binding PF00216.21 CQR56887.1 - 1.4e-36 124.6 0.2 1.5e-36 124.5 0.2 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 CQR56887.1 - 7.8e-07 29.2 0.0 8.5e-07 29.1 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 CQR56887.1 - 0.0002 21.2 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_2 PF18289.1 CQR56887.1 - 0.0024 18.0 0.0 0.0033 17.6 0.0 1.1 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-DNA_bdg PF14848.6 CQR56887.1 - 0.14 12.1 0.0 0.24 11.4 0.0 1.4 2 0 0 2 2 2 0 DNA-binding domain Spore_IV_A PF09547.10 CQR56888.1 - 8.6e-228 757.2 0.1 9.6e-228 757.0 0.1 1.0 1 0 0 1 1 1 1 Stage IV sporulation protein A (spore_IV_A) MMR_HSR1 PF01926.23 CQR56888.1 - 0.00053 20.1 0.0 0.0013 18.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 CQR56888.1 - 0.012 15.1 0.0 0.084 12.4 0.0 2.0 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MeaB PF03308.16 CQR56888.1 - 0.041 12.9 0.1 0.15 11.0 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 CQR56888.1 - 0.18 12.1 0.1 6.5 7.0 0.0 2.9 2 1 1 3 3 3 0 AAA domain DUF3939 PF13075.6 CQR56889.1 - 3e-05 24.1 0.4 0.00031 20.8 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF3939) Fer2 PF00111.27 CQR56890.1 - 5.3e-11 42.3 0.3 8.7e-11 41.6 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 CQR56890.1 - 0.00025 21.0 0.4 0.00055 19.9 0.4 1.8 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF5461 PF17545.2 CQR56890.1 - 0.25 11.7 0.0 0.32 11.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5461) DUF2768 PF10966.8 CQR56892.1 - 1.2e-11 44.8 9.0 1.5e-11 44.5 9.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2768) Clc-like PF07062.12 CQR56892.1 - 0.077 12.5 2.0 0.085 12.3 2.0 1.0 1 0 0 1 1 1 0 Clc-like DUF3290 PF11694.8 CQR56892.1 - 0.13 12.2 0.8 0.15 12.0 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF3040 PF11239.8 CQR56892.1 - 0.28 11.5 3.5 0.35 11.2 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Deltameth_res PF16020.5 CQR56892.1 - 1.3 9.0 3.2 0.54 10.2 0.4 1.8 1 1 1 2 2 2 0 Deltamethrin resistance DUF4131 PF13567.6 CQR56892.1 - 5.5 6.6 5.7 6.4 6.4 5.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF202 PF02656.15 CQR56892.1 - 5.9 7.4 7.5 6.6 7.3 7.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) SpoVIF PF14069.6 CQR56893.1 - 1.7e-19 69.3 1.5 2.1e-19 69.1 1.5 1.1 1 0 0 1 1 1 1 Stage VI sporulation protein F DUF1002 PF06207.11 CQR56893.1 - 0.00014 21.5 1.9 0.00016 21.3 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) ERAP1_C PF11838.8 CQR56893.1 - 0.13 11.8 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 ERAP1-like C-terminal domain NAD_Gly3P_dh_N PF01210.23 CQR56894.1 - 1.9e-52 177.4 0.8 2.9e-52 176.8 0.8 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_Gly3P_dh_C PF07479.14 CQR56894.1 - 2.4e-50 170.5 0.1 4e-50 169.8 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus F420_oxidored PF03807.17 CQR56894.1 - 3.1e-06 27.7 0.2 4e-05 24.1 0.0 2.6 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CQR56894.1 - 0.00053 20.2 0.0 0.002 18.3 0.0 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 CQR56894.1 - 0.0019 17.8 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Abhydrolase_1 PF00561.20 CQR56894.1 - 0.026 14.2 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold EutN_CcmL PF03319.13 CQR56894.1 - 0.075 13.6 0.3 0.69 10.5 0.1 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation protein EutN/carboxysome G3P_acyltransf PF02660.15 CQR56895.1 - 6.1e-51 172.7 20.6 7e-51 172.5 20.6 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase MMR_HSR1 PF01926.23 CQR56896.1 - 5.7e-56 187.5 0.6 9.7e-27 93.3 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase KH_dom-like PF14714.6 CQR56896.1 - 1.2e-34 118.5 0.7 1.3e-33 115.1 0.2 2.3 2 0 0 2 2 2 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FeoB_N PF02421.18 CQR56896.1 - 2.1e-27 95.6 0.4 2.4e-12 46.7 0.1 2.6 2 1 1 3 3 3 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 CQR56896.1 - 2.3e-21 76.2 1.5 1.8e-09 37.4 0.5 5.3 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.16 CQR56896.1 - 2.4e-16 59.7 1.0 6.7e-07 28.8 0.1 3.3 3 1 0 3 3 3 2 AIG1 family Dynamin_N PF00350.23 CQR56896.1 - 4e-14 53.0 0.2 0.0013 18.8 0.1 4.4 2 2 2 4 4 4 3 Dynamin family RsgA_GTPase PF03193.16 CQR56896.1 - 3e-10 40.2 0.2 0.00064 19.7 0.0 4.3 3 1 0 3 3 3 2 RsgA GTPase Roc PF08477.13 CQR56896.1 - 6.4e-07 29.6 0.2 0.035 14.3 0.0 3.5 2 2 1 3 3 3 2 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 CQR56896.1 - 3.6e-06 27.5 0.2 0.026 15.0 0.0 2.8 3 1 0 3 3 2 2 ABC transporter PduV-EutP PF10662.9 CQR56896.1 - 5.4e-05 23.0 0.1 0.69 9.7 0.0 3.7 3 1 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 CQR56896.1 - 9.5e-05 22.1 3.0 0.0025 17.4 0.2 3.3 2 2 2 4 4 4 1 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 CQR56896.1 - 0.00018 21.0 0.1 0.17 11.3 0.0 3.3 3 1 0 3 3 3 1 Signal recognition particle receptor beta subunit Ras PF00071.22 CQR56896.1 - 0.00038 20.1 0.2 1.1 8.9 0.0 2.7 2 2 0 2 2 2 2 Ras family MMR_HSR1_Xtn PF16897.5 CQR56896.1 - 0.0012 18.9 0.1 0.91 9.6 0.0 2.8 3 0 0 3 3 2 1 C-terminal region of MMR_HSR1 domain AAA_29 PF13555.6 CQR56896.1 - 0.0013 18.4 0.0 3.9 7.3 0.0 3.4 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_24 PF13479.6 CQR56896.1 - 0.0018 18.1 0.0 1.9 8.2 0.0 2.5 2 1 0 2 2 2 2 AAA domain Nuc_deoxyri_tr2 PF15891.5 CQR56896.1 - 0.0023 18.2 0.4 0.85 10.0 0.0 2.4 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase like TniB PF05621.11 CQR56896.1 - 0.0028 17.1 0.0 1.7 8.0 0.0 2.5 2 1 0 2 2 2 2 Bacterial TniB protein MeaB PF03308.16 CQR56896.1 - 0.0031 16.5 2.4 7.8 5.4 0.0 3.9 4 0 0 4 4 4 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 CQR56896.1 - 0.0049 17.3 0.1 1 9.8 0.0 3.1 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 CQR56896.1 - 0.0064 16.4 0.2 5.7 6.8 0.0 3.4 3 0 0 3 3 3 1 NTPase RNA_helicase PF00910.22 CQR56896.1 - 0.0066 16.8 0.0 3.8 7.9 0.0 2.7 2 1 0 2 2 2 1 RNA helicase NB-ARC PF00931.22 CQR56896.1 - 0.0086 15.3 0.0 4 6.5 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain AAA_15 PF13175.6 CQR56896.1 - 0.0087 15.8 0.0 2.9 7.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain Nuc_deoxyrib_tr PF05014.15 CQR56896.1 - 0.01 15.8 0.3 0.16 12.0 0.1 2.3 2 0 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase AAA_18 PF13238.6 CQR56896.1 - 0.024 15.2 1.0 6 7.4 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_16 PF13191.6 CQR56896.1 - 0.037 14.4 0.0 5.7 7.3 0.0 3.3 3 1 1 4 4 4 0 AAA ATPase domain GBP PF02263.19 CQR56896.1 - 0.1 11.8 0.0 5.9 6.1 0.0 2.3 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_22 PF13401.6 CQR56896.1 - 0.12 12.6 0.0 16 5.8 0.0 3.2 3 0 0 3 3 3 0 AAA domain S1 PF00575.23 CQR56897.1 - 1.5e-75 249.5 25.8 3.5e-26 91.3 2.6 4.2 4 0 0 4 4 4 4 S1 RNA binding domain S1_2 PF13509.6 CQR56897.1 - 5.9e-06 26.3 7.7 0.095 12.8 0.0 4.7 4 2 0 4 4 4 2 S1 domain DUF2110 PF09883.9 CQR56897.1 - 4.3e-05 23.2 7.3 0.045 13.3 0.3 2.9 1 1 2 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2110) RNase_II_C_S1 PF18614.1 CQR56897.1 - 0.00052 19.9 4.3 0.13 12.3 0.0 4.0 4 1 0 4 4 4 2 RNase II-type exonuclease C-terminal S1 domain Rho_RNA_bind PF07497.12 CQR56897.1 - 0.04 13.8 0.5 5.5 6.9 0.0 3.5 4 0 0 4 4 4 0 Rho termination factor, RNA-binding domain RuvA_N PF01330.21 CQR56897.1 - 0.084 13.0 1.7 3.4 7.8 0.2 2.9 2 0 0 2 2 2 0 RuvA N terminal domain RsgI_N PF12791.7 CQR56897.1 - 0.13 12.2 4.5 6.8 6.7 0.0 3.8 4 0 0 4 4 4 0 Anti-sigma factor N-terminus PV-1 PF06637.11 CQR56897.1 - 0.15 10.8 1.3 4.7 5.9 0.0 2.2 2 0 0 2 2 2 0 PV-1 protein (PLVAP) TRAM PF01938.20 CQR56897.1 - 0.76 9.8 8.7 19 5.3 0.0 4.6 4 0 0 4 4 4 0 TRAM domain BSP_II PF05432.11 CQR56897.1 - 1 9.0 9.4 2.2 7.9 9.4 1.6 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) EXOSC1 PF10447.9 CQR56897.1 - 2.8 8.6 11.7 2.5 8.8 0.4 3.9 4 1 0 4 4 4 0 Exosome component EXOSC1/CSL4 Acyltransferase PF01553.21 CQR56898.1 - 9.3e-24 83.6 0.0 1.2e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 Acyltransferase Cytidylate_kin PF02224.18 CQR56899.1 - 1.4e-69 234.1 2.5 1.6e-69 233.9 2.5 1.0 1 0 0 1 1 1 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 CQR56899.1 - 7.4e-10 39.2 0.3 1e-09 38.8 0.3 1.1 1 0 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 CQR56899.1 - 1e-05 26.0 0.1 5.8e-05 23.5 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 CQR56899.1 - 1.3e-05 25.8 0.0 5.5e-05 23.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 CQR56899.1 - 2.6e-05 24.4 0.0 0.00018 21.7 0.0 2.0 2 0 0 2 2 2 1 Shikimate kinase AAA_33 PF13671.6 CQR56899.1 - 8.4e-05 22.8 0.1 0.00036 20.7 0.0 2.0 2 1 1 3 3 3 1 AAA domain ADK PF00406.22 CQR56899.1 - 0.0032 17.6 0.0 0.0083 16.2 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase ABC_tran PF00005.27 CQR56899.1 - 0.0033 18.0 0.2 0.0081 16.7 0.1 1.8 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 CQR56899.1 - 0.0084 16.4 0.0 0.019 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR56899.1 - 0.018 15.5 0.1 0.025 15.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 CQR56899.1 - 0.018 15.3 0.1 2 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR56899.1 - 0.023 13.9 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 CQR56899.1 - 0.03 14.0 0.2 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 CQR56899.1 - 0.054 13.9 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 CQR56899.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.6 1 1 0 1 1 1 0 NACHT domain PilZ PF07238.14 CQR56900.1 - 2e-12 47.3 0.1 7.1e-12 45.5 0.0 1.7 2 0 0 2 2 2 1 PilZ domain YcgR_2 PF12945.7 CQR56900.1 - 8.8e-10 38.6 0.1 3e-09 36.9 0.1 1.9 3 0 0 3 3 3 1 Flagellar protein YcgR YPEB PF14620.6 CQR56901.1 - 7.1e-126 420.4 2.7 8.7e-126 420.1 2.7 1.1 1 0 0 1 1 1 1 YpeB sporulation PrsW-protease PF13367.6 CQR56902.1 - 5.8e-36 123.8 12.4 7.6e-36 123.4 12.4 1.1 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease SK_channel PF03530.14 CQR56902.1 - 0.023 14.6 0.3 0.066 13.2 0.3 1.7 1 0 0 1 1 1 0 Calcium-activated SK potassium channel DDE_3 PF13358.6 CQR56903.1 - 3.9e-36 124.0 0.0 4.8e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.6 CQR56904.1 - 2.7e-19 68.6 0.0 5.2e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Terminase_5 PF06056.12 CQR56904.1 - 1.1e-08 34.8 0.0 6.7e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_32 PF13565.6 CQR56904.1 - 1.3e-08 35.3 0.0 2.3e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 CQR56904.1 - 3.2e-07 30.3 0.0 7.6e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 CQR56904.1 - 6.1e-07 29.1 0.2 1.7e-06 27.7 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 CQR56904.1 - 0.00014 21.9 0.0 0.00047 20.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 CQR56904.1 - 0.00057 20.3 0.6 0.0017 18.8 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 CQR56904.1 - 0.013 15.1 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR56904.1 - 0.019 14.6 0.1 0.061 13.0 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 CQR56904.1 - 0.025 14.4 0.5 0.093 12.5 0.1 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain DUF1670 PF07900.11 CQR56904.1 - 0.082 12.3 0.1 0.17 11.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1670) MecA PF05389.12 CQR56905.1 - 8.1e-39 133.6 0.0 1.5e-36 126.2 0.0 2.0 1 1 0 1 1 1 1 Negative regulator of genetic competence (MecA) SnoaL PF07366.12 CQR56906.1 - 0.15 11.8 0.0 0.22 11.3 0.0 1.4 1 1 0 1 1 1 0 SnoaL-like polyketide cyclase YtxH PF12732.7 CQR56906.1 - 0.17 12.4 1.1 0.33 11.5 1.1 1.6 1 1 0 1 1 1 0 YtxH-like protein Polysacc_deac_1 PF01522.21 CQR56907.1 - 1.2e-30 105.9 0.0 1.8e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 CQR56907.1 - 0.0097 15.6 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) MSP1_C PF07462.11 CQR56907.1 - 0.43 9.2 5.0 0.69 8.5 5.0 1.3 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus DUF1180 PF06679.12 CQR56907.1 - 7.4 7.0 10.8 12 6.3 10.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Metallophos_2 PF12850.7 CQR56909.1 - 8.1e-10 39.1 0.1 2.4e-09 37.6 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 CQR56909.1 - 5.6e-08 33.5 0.0 5.8e-07 30.2 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Spore_coat_CotO PF14153.6 CQR56910.1 - 0.0052 16.7 0.0 0.006 16.5 0.0 1.0 1 0 0 1 1 1 1 Spore coat protein CotO Ctr PF04145.15 CQR56910.1 - 0.19 12.4 0.9 0.37 11.4 0.9 1.5 1 1 0 1 1 1 0 Ctr copper transporter family CPBP PF02517.16 CQR56911.1 - 1.2e-11 44.8 9.0 1.2e-11 44.8 9.0 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Casein PF00363.18 CQR56912.1 - 0.34 11.3 1.8 3.3 8.2 0.0 2.5 3 0 0 3 3 3 0 Casein 2-Hacid_dh_C PF02826.19 CQR56913.1 - 1.9e-65 219.5 0.0 4.5e-65 218.3 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 CQR56913.1 - 1.8e-32 111.8 0.8 4.1e-32 110.7 0.2 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 CQR56913.1 - 7.5e-08 32.0 0.1 2.1e-07 30.6 0.1 1.9 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.15 CQR56913.1 - 8.6e-05 22.8 0.1 0.00024 21.3 0.1 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 CQR56913.1 - 0.0014 18.2 0.0 0.0048 16.5 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACT_4 PF13291.6 CQR56913.1 - 0.021 15.4 0.6 0.17 12.5 0.1 2.6 2 0 0 2 2 2 0 ACT domain UDPG_MGDP_dh_C PF03720.15 CQR56913.1 - 0.13 12.7 0.0 0.36 11.3 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TM1506 PF08973.10 CQR56913.1 - 0.18 11.5 1.1 1.6 8.4 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1893) adh_short PF00106.25 CQR56914.1 - 2.7e-26 92.3 0.0 6.3e-26 91.0 0.0 1.6 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR56914.1 - 2.5e-25 89.4 0.0 3.7e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR56914.1 - 4.5e-05 23.4 0.1 6.6e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 KR domain WYL PF13280.6 CQR56915.1 - 6.6e-34 117.4 0.0 8.9e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR56915.1 - 5.1e-14 52.0 0.1 8.6e-14 51.2 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR56915.1 - 3.6e-06 26.6 0.1 9.4e-06 25.3 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR56915.1 - 1.5e-05 25.2 0.1 3.8e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 CQR56915.1 - 0.026 14.1 0.2 0.048 13.2 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 CQR56915.1 - 0.041 13.7 0.2 0.1 12.4 0.2 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 CQR56915.1 - 0.063 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MCPsignal PF00015.21 CQR56916.1 - 6.1e-37 127.1 48.4 1.7e-36 125.6 24.6 4.0 1 1 3 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR56916.1 - 2.6e-05 24.5 0.0 0.00036 20.9 0.0 3.1 2 1 0 2 2 2 1 HAMP domain CK2S PF15011.6 CQR56916.1 - 0.0032 17.4 9.8 0.078 12.9 1.5 3.6 3 1 0 3 3 3 2 Casein Kinase 2 substrate FUSC PF04632.12 CQR56916.1 - 0.0041 15.7 3.3 0.0067 15.0 0.6 2.5 1 1 1 2 2 2 1 Fusaric acid resistance protein family Syntaxin-6_N PF09177.11 CQR56916.1 - 0.72 10.4 19.4 0.19 12.3 1.8 4.2 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Fib_alpha PF08702.10 CQR56916.1 - 1.1 9.4 31.0 5.5 7.2 6.0 4.4 2 2 1 4 4 4 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 CQR56916.1 - 1.9 8.5 33.5 2.2 8.3 11.1 4.4 2 2 3 5 5 5 0 Laminin Domain II UPF0242 PF06785.11 CQR56916.1 - 2.8 8.0 16.1 0.53 10.4 0.3 3.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Phasin_2 PF09361.10 CQR56916.1 - 4 7.8 22.5 0.72 10.2 4.3 4.2 3 2 1 4 4 4 0 Phasin protein Sec34 PF04136.15 CQR56916.1 - 4.3 7.2 20.2 1.1 9.2 0.8 4.4 1 1 4 5 5 5 0 Sec34-like family DUF948 PF06103.11 CQR56916.1 - 5 7.4 44.2 11 6.4 3.8 6.9 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Noelin-1 PF12308.8 CQR56916.1 - 5.3 7.1 12.9 0.24 11.4 1.1 4.1 2 2 3 5 5 5 0 Neurogenesis glycoprotein LMBR1 PF04791.16 CQR56916.1 - 9.9 4.9 19.1 6.8 5.5 2.0 2.4 2 1 0 2 2 2 0 LMBR1-like membrane protein TPP_enzyme_N PF02776.18 CQR56917.1 - 2e-45 154.5 0.0 7.2e-43 146.2 0.0 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 CQR56917.1 - 5.5e-36 123.3 0.0 1.1e-35 122.4 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 CQR56917.1 - 4.8e-33 114.1 1.1 8.4e-33 113.3 0.5 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 CQR56917.1 - 0.055 12.4 0.2 0.055 12.4 0.2 1.9 3 0 0 3 3 3 0 Dehydrogenase E1 component CMD PF02627.20 CQR56918.1 - 2.2e-09 37.3 0.0 2.6e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family ACP_syn_III_C PF08541.10 CQR56920.1 - 1.6e-17 63.4 0.0 8.3e-17 61.1 0.0 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 CQR56920.1 - 5.9e-14 51.7 0.1 1.3e-13 50.6 0.0 1.6 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IRK_N PF08466.10 CQR56920.1 - 0.02 15.0 0.1 0.037 14.2 0.1 1.4 1 0 0 1 1 1 0 Inward rectifier potassium channel N-terminal FGGY_N PF00370.21 CQR56921.1 - 1.7e-81 273.4 0.1 6.3e-80 268.3 0.0 2.1 2 0 0 2 2 2 2 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 CQR56921.1 - 1.4e-60 204.4 3.2 2.6e-60 203.6 3.2 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain PWWP PF00855.17 CQR56921.1 - 0.017 15.5 0.2 0.059 13.8 0.0 1.8 2 0 0 2 2 2 0 PWWP domain HATPase_c PF02518.26 CQR56922.1 - 4.4e-27 94.8 0.0 1.3e-26 93.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR56922.1 - 4.8e-22 77.8 1.4 1.3e-21 76.4 0.2 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR56922.1 - 1.7e-12 47.5 0.0 4.4e-12 46.2 0.0 1.8 1 0 0 1 1 1 1 HAMP domain PAS_4 PF08448.10 CQR56922.1 - 3.7e-05 23.9 0.0 0.00028 21.1 0.1 2.5 3 1 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.6 CQR56922.1 - 0.0088 15.9 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR56922.1 - 0.01 15.7 0.3 0.049 13.5 0.1 2.2 2 1 0 2 2 2 0 GHKL domain HATPase_c_2 PF13581.6 CQR56922.1 - 0.078 12.9 0.0 0.24 11.4 0.0 1.9 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain PAS PF00989.25 CQR56922.1 - 0.087 12.8 0.0 0.22 11.5 0.0 1.8 1 1 0 1 1 1 0 PAS fold Response_reg PF00072.24 CQR56923.1 - 4e-31 107.5 0.0 7e-31 106.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR56923.1 - 1.4e-28 98.7 0.0 2.7e-28 97.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 CQR56923.1 - 0.014 14.9 0.1 2.8 7.5 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Cytochrom_C_asm PF01578.20 CQR56924.1 - 3.5e-38 131.5 30.6 6e-29 101.3 11.3 3.2 3 0 0 3 3 3 3 Cytochrome C assembly protein ResB PF05140.14 CQR56925.1 - 2.1e-93 313.7 0.0 1.3e-71 241.9 0.0 2.1 1 1 1 2 2 2 2 ResB-like family DZR PF12773.7 CQR56925.1 - 0.022 14.8 0.4 0.04 13.9 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon WBP-1 PF11669.8 CQR56925.1 - 0.032 14.9 0.1 0.083 13.5 0.1 1.6 1 0 0 1 1 1 0 WW domain-binding protein 1 zinc_ribbon_2 PF13240.6 CQR56925.1 - 0.054 13.2 4.0 0.095 12.5 4.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF4248 PF14053.6 CQR56925.1 - 0.12 12.4 0.1 0.28 11.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) DUF4381 PF14316.6 CQR56925.1 - 1.4 9.2 3.9 23 5.2 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) AhpC-TSA PF00578.21 CQR56926.1 - 4.9e-31 107.2 0.0 6.5e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR56926.1 - 1.4e-25 89.7 0.0 1.7e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 CQR56926.1 - 5.8e-13 49.0 0.0 8.1e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 CQR56926.1 - 2.9e-08 33.6 0.1 5.3e-06 26.4 0.3 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 CQR56926.1 - 2.4e-05 24.7 0.0 3.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA_2 PF13911.6 CQR56926.1 - 0.00063 19.8 0.0 0.00086 19.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme GSHPx PF00255.19 CQR56926.1 - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione peroxidase T4_deiodinase PF00837.17 CQR56926.1 - 0.021 14.1 0.0 0.034 13.4 0.0 1.3 1 1 0 1 1 1 0 Iodothyronine deiodinase PseudoU_synth_2 PF00849.22 CQR56927.1 - 1.1e-24 87.3 0.1 2.6e-24 86.1 0.1 1.6 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 CQR56927.1 - 3.7e-13 49.0 0.0 7.8e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 S4 domain SUKH-3 PF14433.6 CQR56927.1 - 0.09 13.2 0.0 0.16 12.4 0.0 1.5 1 1 0 1 1 1 0 SUKH-3 immunity protein Amidase_2 PF01510.25 CQR56928.1 - 5.2e-05 23.7 0.0 0.00014 22.3 0.0 1.6 1 1 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase Erythro_esteras PF05139.14 CQR56929.1 - 1.9e-49 169.4 0.1 2.2e-49 169.1 0.1 1.1 1 0 0 1 1 1 1 Erythromycin esterase Cofac_haem_bdg PF04187.13 CQR56929.1 - 0.07 13.1 0.9 0.51 10.3 0.9 2.4 1 1 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN PRESAN PF09687.10 CQR56929.1 - 0.092 13.3 1.0 1 9.9 0.2 2.5 2 0 0 2 2 2 0 Plasmodium RESA N-terminal Gate PF07670.14 CQR56930.1 - 0.16 12.3 6.6 0.035 14.4 3.0 1.9 2 1 0 2 2 2 0 Nucleoside recognition Gate PF07670.14 CQR56931.1 - 3.3e-10 40.2 1.1 3.3e-10 40.2 1.1 2.1 1 1 1 2 2 2 1 Nucleoside recognition Peptidase_S11 PF00768.20 CQR56932.1 - 1.1e-66 224.7 0.3 1.4e-66 224.4 0.3 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 CQR56932.1 - 9.5e-07 28.6 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 CQR56932.1 - 0.00068 18.5 0.1 0.0055 15.5 0.1 2.0 1 1 1 2 2 2 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Beta-lactamase PF00144.24 CQR56932.1 - 0.02 14.2 0.1 0.3 10.3 0.0 2.1 2 0 0 2 2 2 0 Beta-lactamase Phage_Mu_Gp45 PF06890.12 CQR56932.1 - 0.1 12.4 0.0 8 6.3 0.0 3.1 4 0 0 4 4 4 0 Bacteriophage Mu Gp45 protein Spore_YtfJ PF09579.10 CQR56933.1 - 1.1e-28 99.1 0.9 3.2e-28 97.7 0.9 1.8 1 1 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) XendoU PF09412.10 CQR56934.1 - 3.1e-27 95.4 0.0 3.7e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease XendoU DUF2953 PF11167.8 CQR56935.1 - 5.4e-10 39.2 0.0 1e-09 38.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) SMC_ScpB PF04079.16 CQR56936.1 - 7.1e-56 188.2 0.1 8.5e-56 188.0 0.1 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB ComFB PF10719.9 CQR56936.1 - 0.071 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Late competence development protein ComFB SMC_ScpA PF02616.14 CQR56937.1 - 4.7e-41 141.3 3.4 5.5e-41 141.1 3.4 1.0 1 0 0 1 1 1 1 Segregation and condensation protein ScpA WcbI PF18588.1 CQR56937.1 - 0.022 14.4 0.1 0.035 13.7 0.1 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis enzyme WcbI DMRL_synthase PF00885.19 CQR56938.1 - 4.6e-59 198.3 0.2 5.2e-59 198.1 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase KdgT PF03812.13 CQR56938.1 - 0.063 12.6 0.0 0.075 12.4 0.0 1.1 1 0 0 1 1 1 0 2-keto-3-deoxygluconate permease DHBP_synthase PF00926.19 CQR56939.1 - 9.2e-86 286.3 0.3 1.3e-85 285.8 0.3 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 CQR56939.1 - 5.3e-79 263.5 0.0 9e-79 262.8 0.0 1.3 1 0 0 1 1 1 1 GTP cyclohydrolase II Lum_binding PF00677.17 CQR56940.1 - 5.7e-47 157.6 1.7 1.4e-24 85.9 0.1 2.1 2 0 0 2 2 2 2 Lumazine binding domain Prot_ATP_ID_OB PF16450.5 CQR56940.1 - 0.0034 17.3 0.0 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 Proteasomal ATPase OB C-terminal domain RibD_C PF01872.17 CQR56941.1 - 3.6e-54 183.7 0.2 4.8e-54 183.2 0.2 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 CQR56941.1 - 2.6e-18 65.8 0.5 4.5e-18 65.0 0.2 1.6 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 CQR56941.1 - 5.3e-10 39.2 0.0 1.3e-09 37.9 0.0 1.7 2 0 0 2 2 2 1 MafB19-like deaminase Inv-AAD PF18785.1 CQR56941.1 - 0.0015 18.4 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 Invertebrate-AID/APOBEC-deaminase MscL PF01741.18 CQR56942.1 - 8.1e-43 145.6 2.3 9.1e-43 145.4 2.3 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF3487 PF11990.8 CQR56942.1 - 0.58 10.1 4.9 6.2 6.7 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) HTH_3 PF01381.22 CQR56943.1 - 1e-09 38.3 0.1 2.4e-09 37.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix TPR_MalT PF17874.1 CQR56943.1 - 1.9e-06 27.5 2.9 0.014 14.8 0.6 2.4 1 1 1 2 2 2 2 MalT-like TPR region HTH_19 PF12844.7 CQR56943.1 - 2.1e-06 27.6 0.1 5.3e-06 26.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TPR_2 PF07719.17 CQR56943.1 - 3.1e-06 26.9 13.5 0.23 11.6 0.0 5.9 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 CQR56943.1 - 5.6e-06 26.5 23.3 0.0069 16.7 1.8 4.8 3 2 0 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR56943.1 - 1.5e-05 25.1 7.3 0.083 13.1 0.1 3.4 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 HTH_31 PF13560.6 CQR56943.1 - 0.0002 21.7 0.0 0.00095 19.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TPR_4 PF07721.14 CQR56943.1 - 0.013 16.1 3.6 19 6.2 0.1 4.7 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC5 PF12862.7 CQR56943.1 - 0.02 15.0 2.1 11 6.1 2.1 3.1 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 5 Wzy_C_2 PF11846.8 CQR56943.1 - 0.037 13.9 2.1 0.083 12.8 0.2 2.3 3 0 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal TPR_1 PF00515.28 CQR56943.1 - 0.05 13.4 9.5 2 8.4 0.1 4.7 7 0 0 7 7 7 0 Tetratricopeptide repeat TPR_14 PF13428.6 CQR56943.1 - 0.15 13.0 16.5 12 7.1 0.1 6.2 7 1 1 8 8 7 0 Tetratricopeptide repeat TPR_16 PF13432.6 CQR56943.1 - 0.51 11.0 20.1 12 6.6 0.1 5.4 4 2 2 6 6 6 0 Tetratricopeptide repeat TPR_8 PF13181.6 CQR56943.1 - 0.63 10.4 11.2 14 6.2 0.3 5.4 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.6 CQR56943.1 - 0.76 9.7 18.6 2.7 8.0 0.1 5.9 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_11 PF13414.6 CQR56943.1 - 1.6 8.5 5.9 8.5 6.2 0.0 3.7 4 0 0 4 4 4 0 TPR repeat TPR_6 PF13174.6 CQR56943.1 - 5.9 7.7 16.5 8.2 7.3 0.0 5.4 6 1 0 6 6 5 0 Tetratricopeptide repeat MFS_1 PF07690.16 CQR56944.1 - 6.7e-33 114.1 65.6 3.3e-27 95.4 37.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR56944.1 - 2.8e-13 49.1 31.7 2.7e-12 45.8 31.7 1.9 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR56944.1 - 1.5e-06 27.0 6.6 1.5e-06 27.0 6.6 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein Peptidase_M10 PF00413.24 CQR56945.1 - 1.1e-06 28.6 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 CQR56945.1 - 0.00031 21.0 2.2 0.00041 20.6 2.2 1.4 1 1 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 CQR56945.1 - 0.00053 20.5 0.0 0.0012 19.4 0.0 1.6 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 CQR56945.1 - 0.0034 17.1 0.5 0.0049 16.5 0.1 1.5 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 CQR56945.1 - 0.011 15.0 0.1 0.011 15.0 0.1 1.5 2 0 0 2 2 2 0 Met-zincin Peptidase_M57 PF12388.8 CQR56945.1 - 0.013 15.1 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Peptidase_M43 PF05572.13 CQR56945.1 - 0.026 14.4 0.3 0.045 13.7 0.0 1.6 2 0 0 2 2 2 0 Pregnancy-associated plasma protein-A Peptidase_M7 PF02031.16 CQR56945.1 - 0.033 14.3 3.6 0.042 14.0 0.1 2.2 2 0 0 2 2 2 0 Streptomyces extracellular neutral proteinase (M7) family Cu_amine_oxidN1 PF07833.11 CQR56948.1 - 4.6e-26 91.1 3.2 7.9e-24 84.0 1.1 2.3 1 1 1 2 2 2 2 Copper amine oxidase N-terminal domain GDYXXLXY PF14345.6 CQR56948.1 - 0.11 12.3 0.0 0.25 11.1 0.0 1.5 1 1 0 1 1 1 0 GDYXXLXY protein RVT_1 PF00078.27 CQR56949.1 - 7.7e-47 159.7 0.0 1.2e-46 159.1 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR56949.1 - 1.2e-15 57.3 9.9 1.7e-15 56.9 8.0 2.2 2 0 0 2 2 2 1 Group II intron, maturase-specific domain Collagen_bind PF05737.12 CQR56950.1 - 1.3e-72 242.1 15.3 3.7e-16 59.5 0.1 5.3 5 0 0 5 5 5 5 Collagen binding domain Big_8 PF17961.1 CQR56950.1 - 9.7e-16 57.8 0.7 9.7e-16 57.8 0.7 4.0 4 0 0 4 4 4 1 Bacterial Ig domain SpaA PF17802.1 CQR56950.1 - 8.2e-15 54.9 1.7 3.1e-14 53.0 0.0 3.1 2 1 0 2 2 2 1 Prealbumin-like fold domain Gram_pos_anchor PF00746.21 CQR56950.1 - 0.0021 17.9 0.0 0.0052 16.7 0.0 1.7 1 0 0 1 1 1 1 LPXTG cell wall anchor motif SdrD_B PF17210.3 CQR56950.1 - 0.16 12.2 0.0 0.16 12.2 0.0 3.7 4 0 0 4 4 4 0 SdrD B-like domain DUF5626 PF18540.1 CQR56950.1 - 2.1 8.9 8.4 1.2 9.7 0.1 3.9 2 1 2 4 4 4 0 Domain of unknown function (DUF5626) Intg_mem_TP0381 PF09529.10 CQR56951.1 - 2.2e-55 187.6 24.1 2.6e-55 187.4 24.1 1.0 1 0 0 1 1 1 1 Integral membrane protein (intg_mem_TP0381) Pro_isomerase PF00160.21 CQR56952.1 - 1.1e-42 146.0 0.1 1.2e-42 145.9 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Orn_Arg_deC_N PF02784.16 CQR56953.1 - 1.2e-66 224.6 0.2 1.6e-66 224.2 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 CQR56953.1 - 1.9e-18 66.5 0.0 2.6e-18 66.1 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 CQR56953.1 - 0.0001 22.0 0.4 0.00022 20.9 0.4 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain LdpA_C PF12617.8 CQR56953.1 - 0.018 14.6 0.0 3.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Iron-Sulfur binding protein C terminal GerA PF03323.13 CQR56954.1 - 1.5e-147 491.9 1.0 1.9e-147 491.6 1.0 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein SpoVAB PF13782.6 CQR56955.1 - 2.9e-33 114.4 0.8 2.9e-33 114.4 0.8 1.9 1 1 1 2 2 2 1 Stage V sporulation protein AB SporV_AA PF12164.8 CQR56956.1 - 2e-13 50.5 0.0 3.4e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Stage V sporulation protein AA EamA PF00892.20 CQR56958.1 - 1.1e-28 100.1 36.9 1.2e-15 57.9 17.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family PBP_like_2 PF12849.7 CQR56959.1 - 7.6e-23 81.6 0.2 2.4e-22 79.9 0.1 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 CQR56959.1 - 1.5e-05 24.2 0.0 2.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 CQR56959.1 - 0.00081 19.2 0.0 0.0044 16.8 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein MscS_TM PF12794.7 CQR56959.1 - 0.43 9.4 7.4 0.73 8.6 7.4 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 ThrE PF06738.12 CQR56959.1 - 0.66 9.3 6.7 13 5.0 0.0 2.3 1 1 1 2 2 2 0 Putative threonine/serine exporter DUF2070 PF09843.9 CQR56959.1 - 3.9 5.6 8.5 5.6 5.1 8.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) COesterase PF00135.28 CQR56960.1 - 1.5e-114 383.7 0.0 5.5e-113 378.5 0.0 2.0 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 CQR56960.1 - 5.5e-10 39.5 3.4 2.9e-09 37.1 3.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR56960.1 - 0.025 14.0 0.2 0.041 13.3 0.2 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase family TAP_C PF03943.13 CQR56960.1 - 0.12 12.0 0.0 0.32 10.7 0.0 1.7 1 0 0 1 1 1 0 TAP C-terminal domain AI-2E_transport PF01594.16 CQR56961.1 - 1e-80 271.4 33.9 1.4e-80 270.9 33.4 1.5 1 1 1 2 2 2 1 AI-2E family transporter Baculo_PEP_C PF04513.12 CQR56961.1 - 0.13 12.3 0.3 0.24 11.4 0.3 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Acetyltransf_1 PF00583.25 CQR56962.1 - 1.5e-09 38.1 0.0 4.6e-09 36.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.10 CQR56962.1 - 3.3e-09 36.6 0.0 8e-09 35.3 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltran PF12746.7 CQR56962.1 - 1.6e-07 31.2 0.0 5.6e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 GNAT acetyltransferase Acetyltransf_10 PF13673.7 CQR56962.1 - 1.4e-05 25.1 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR56962.1 - 0.0001 22.6 0.0 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR56962.1 - 0.013 16.2 0.0 0.025 15.2 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR56962.1 - 0.021 14.9 0.0 0.067 13.3 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR56962.1 - 0.023 14.8 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase 2Fe-2S_thioredx PF01257.19 CQR56964.1 - 1.4e-05 25.0 0.3 1.8e-05 24.7 0.3 1.1 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.11 CQR56964.1 - 0.017 15.5 1.0 0.036 14.5 0.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1636) Spore_permease PF03845.13 CQR56966.1 - 7.5e-60 202.4 27.1 1e-59 202.0 27.1 1.2 1 0 0 1 1 1 1 Spore germination protein Spore_GerAC PF05504.11 CQR56967.1 - 2.3e-33 115.8 2.4 3.8e-33 115.0 2.4 1.4 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal GerA PF03323.13 CQR56968.1 - 2.3e-183 609.9 1.9 2.7e-183 609.7 1.9 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein Pyr_redox_2 PF07992.14 CQR56969.1 - 1.2e-24 87.1 0.0 1.4e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR56969.1 - 1e-19 70.9 0.1 1.4e-15 57.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR56969.1 - 1.5e-11 44.7 0.3 4.1e-09 36.9 0.1 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR56969.1 - 1e-08 34.4 1.2 7.1e-06 25.0 0.0 3.5 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 CQR56969.1 - 1.2e-07 31.9 0.1 1.3e-05 25.3 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 CQR56969.1 - 6.9e-05 22.4 0.1 0.00018 21.0 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 CQR56969.1 - 8.6e-05 22.3 0.2 0.23 11.0 0.0 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR56969.1 - 0.0001 21.6 0.1 0.094 11.8 0.0 3.0 2 1 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 CQR56969.1 - 0.00016 21.0 0.0 0.00096 18.5 0.0 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 CQR56969.1 - 0.0071 16.8 0.1 0.095 13.2 0.0 2.6 3 0 0 3 3 3 1 Putative NAD(P)-binding FMO-like PF00743.19 CQR56969.1 - 0.0075 14.7 0.0 0.012 14.1 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like GIDA PF01134.22 CQR56969.1 - 0.031 13.3 0.0 0.057 12.5 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Lycopene_cycl PF05834.12 CQR56969.1 - 0.071 12.1 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein FecCD PF01032.18 CQR56970.1 - 1.8e-78 263.7 20.2 9.4e-53 179.2 12.2 2.0 1 1 1 2 2 2 2 FecCD transport family FecCD PF01032.18 CQR56971.1 - 2.4e-67 227.1 21.5 2.7e-67 227.0 21.5 1.0 1 0 0 1 1 1 1 FecCD transport family rve_3 PF13683.6 CQR56972.1 - 1e-14 54.0 0.1 1.3e-14 53.7 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 CQR56972.1 - 8.4e-12 45.1 3.3 1.1e-11 44.7 3.3 1.2 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 CQR56972.1 - 0.00017 21.8 0.0 0.00055 20.1 0.0 1.7 1 1 1 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 CQR56972.1 - 0.007 16.6 0.4 0.0076 16.5 0.4 1.1 1 0 0 1 1 1 1 DDE domain rve PF00665.26 CQR56973.1 - 1.4e-13 51.1 0.0 1.8e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 CQR56973.1 - 0.019 15.2 0.1 0.028 14.6 0.1 1.2 1 0 0 1 1 1 0 DDE domain HTH_21 PF13276.6 CQR56974.1 - 3.7e-08 33.4 0.0 6.6e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 HTH-like domain HTH_Tnp_1_2 PF13022.6 CQR56974.1 - 0.0098 16.0 0.0 0.021 14.9 0.0 1.6 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 CQR56974.1 - 0.059 13.7 0.0 0.084 13.2 0.0 1.3 1 0 0 1 1 1 0 Transposase UTRA PF07702.13 CQR56975.1 - 2.1e-31 108.7 0.0 4.2e-31 107.7 0.0 1.5 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 CQR56975.1 - 7.1e-20 70.4 0.6 1.3e-19 69.6 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 CQR56975.1 - 0.0002 21.0 0.0 0.00055 19.6 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR56975.1 - 0.00026 21.3 0.0 0.00065 20.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 CQR56975.1 - 0.0055 16.6 1.1 0.017 15.1 0.0 2.4 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.6 CQR56975.1 - 0.0093 15.5 0.1 0.076 12.6 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 CQR56975.1 - 0.042 13.8 0.1 0.3 11.1 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_41 PF14502.6 CQR56975.1 - 0.064 12.9 0.1 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR56975.1 - 0.069 13.1 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Arylesterase PF01731.20 CQR56975.1 - 0.42 10.9 2.4 19 5.5 0.2 2.9 1 1 2 3 3 3 0 Arylesterase ABC_tran PF00005.27 CQR56976.1 - 2e-34 119.1 0.0 2.6e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR56976.1 - 2.6e-18 66.3 0.2 4.3e-18 65.6 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR56976.1 - 4.6e-09 36.0 0.0 6.6e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR56976.1 - 4e-06 26.9 0.0 0.0044 16.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR56976.1 - 0.0012 19.2 0.1 0.0021 18.5 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 CQR56976.1 - 0.019 14.3 0.1 3.6 6.9 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.6 CQR56976.1 - 0.027 14.7 0.6 0.087 13.1 0.6 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 CQR56976.1 - 0.04 13.9 0.0 0.095 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 CQR56976.1 - 0.042 13.6 0.1 0.072 12.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 CQR56976.1 - 0.049 12.8 0.1 0.077 12.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 CQR56976.1 - 0.052 13.4 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 CQR56976.1 - 0.057 13.3 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain PRK PF00485.18 CQR56976.1 - 0.064 13.0 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 CQR56976.1 - 0.072 12.7 0.0 0.37 10.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 CQR56976.1 - 0.086 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein MMR_HSR1 PF01926.23 CQR56976.1 - 0.092 12.8 0.0 0.15 12.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase TniB PF05621.11 CQR56976.1 - 0.1 12.0 0.1 2.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_13 PF13166.6 CQR56976.1 - 0.13 10.9 0.1 0.3 9.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 CQR56976.1 - 0.19 12.2 0.0 0.53 10.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 CQR56977.1 - 7.5e-30 104.2 0.0 1.1e-29 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR56977.1 - 3.3e-21 75.5 0.0 5.9e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR56977.1 - 7e-07 28.9 0.0 9.7e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR56977.1 - 8.1e-06 25.9 0.1 8.8e-05 22.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR56977.1 - 0.0091 16.3 0.5 0.12 12.7 0.5 2.1 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 CQR56977.1 - 0.014 15.0 0.2 0.022 14.4 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 CQR56977.1 - 0.016 14.6 0.3 0.23 10.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 CQR56977.1 - 0.028 14.2 0.1 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_7 PF12775.7 CQR56977.1 - 0.047 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 CQR56977.1 - 0.064 13.6 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 CQR56977.1 - 0.089 12.9 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_5 PF07728.14 CQR56977.1 - 0.17 11.9 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Peptidase_M20 PF01546.28 CQR56978.1 - 4.9e-16 59.1 0.0 8.2e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR56978.1 - 1.5e-14 53.9 0.0 4e-14 52.4 0.0 1.8 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF4296 PF14129.6 CQR56978.1 - 0.051 14.2 0.9 7.2 7.3 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4296) SBP_bac_5 PF00496.22 CQR56979.1 - 4.4e-82 276.0 3.1 5.4e-82 275.7 3.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_3 PF00497.20 CQR56979.1 - 0.0049 16.3 0.1 3.7 6.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 BPD_transp_1 PF00528.22 CQR56980.1 - 2.6e-30 105.5 14.6 2.6e-30 105.5 14.6 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR56980.1 - 0.0001 22.2 0.5 0.0001 22.2 0.5 3.7 4 0 0 4 4 4 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 CQR56981.1 - 1.3e-43 148.9 10.8 1.3e-43 148.9 10.8 2.5 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ST7 PF04184.12 CQR56981.1 - 0.15 10.5 0.6 0.24 9.8 0.6 1.2 1 0 0 1 1 1 0 ST7 protein SIS PF01380.22 CQR56982.1 - 8.4e-18 64.5 0.1 4.5e-10 39.5 0.1 2.3 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 CQR56982.1 - 0.003 17.6 1.9 1.8 8.6 0.0 2.7 3 0 0 3 3 3 2 SIS domain Hydantoinase_B PF02538.14 CQR56983.1 - 8.6e-181 601.8 0.0 9.8e-181 601.6 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Xpo1 PF08389.12 CQR56983.1 - 0.26 11.3 0.2 4.8 7.2 0.1 2.2 2 0 0 2 2 2 0 Exportin 1-like protein Hydantoinase_A PF01968.18 CQR56984.1 - 4.8e-101 337.9 4.8 2e-99 332.5 1.5 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 CQR56984.1 - 1.3e-53 181.4 0.0 4.4e-52 176.4 0.0 2.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region ROK PF00480.20 CQR56984.1 - 0.013 14.9 0.1 0.089 12.3 0.0 2.3 3 0 0 3 3 3 0 ROK family PfkB PF00294.24 CQR56985.1 - 2e-32 112.7 0.3 3.4e-31 108.7 0.3 2.0 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR56985.1 - 0.14 11.5 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase TetR_C_8 PF14278.6 CQR56986.1 - 7e-22 77.5 0.0 1.5e-21 76.4 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR56986.1 - 6.3e-05 22.7 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Mga PF05043.13 CQR56986.1 - 0.024 15.2 0.3 0.039 14.5 0.3 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 CQR56986.1 - 0.037 14.2 0.1 0.061 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase zinc_ribbon_13 PF09855.9 CQR56987.1 - 2.1e-30 104.7 4.3 2.3e-30 104.5 4.3 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1595 PF12760.7 CQR56987.1 - 0.0047 16.9 0.5 1.8 8.6 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 CQR56987.1 - 0.008 15.8 5.4 0.02 14.6 0.1 2.2 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.12 CQR56987.1 - 0.035 13.6 1.9 1.4 8.5 0.3 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 CQR56987.1 - 0.15 11.9 4.1 0.88 9.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-RRN7 PF11781.8 CQR56987.1 - 0.19 11.5 0.4 0.19 11.5 0.4 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-C2H2_3 PF13878.6 CQR56987.1 - 0.43 10.5 3.3 2.1 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Rubredoxin_2 PF18073.1 CQR56987.1 - 0.55 10.0 6.5 3 7.6 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain CpXC PF14353.6 CQR56987.1 - 1.3 9.0 4.5 20 5.2 5.1 2.0 1 1 1 2 2 2 0 CpXC protein Sigma70_r2 PF04542.14 CQR56988.1 - 1.6e-10 40.6 0.1 4.2e-10 39.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR56988.1 - 2.4e-10 39.9 0.0 5.2e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1835 PF08874.10 CQR56988.1 - 1.3e-08 35.0 0.0 2.7e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1835) Sigma70_ECF PF07638.11 CQR56988.1 - 2.5e-05 24.2 0.1 7.2e-05 22.7 0.1 1.8 1 1 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 CQR56988.1 - 2.8e-05 23.5 0.0 6.6e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Cys_rich_CPCC PF14206.6 CQR56989.1 - 1.2e-23 82.7 0.1 1.7e-23 82.2 0.1 1.2 1 0 0 1 1 1 1 Cysteine-rich CPCC RHH_1 PF01402.21 CQR56990.1 - 2.8e-07 30.2 0.5 3.6e-07 29.9 0.5 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 CQR56990.1 - 0.0043 17.0 0.6 0.0052 16.7 0.6 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain CopG_antitoxin PF12441.8 CQR56990.1 - 0.014 15.9 0.1 0.014 15.9 0.1 1.1 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system HicB PF05534.12 CQR56990.1 - 0.024 14.5 0.0 0.032 14.1 0.0 1.1 1 0 0 1 1 1 0 HicB family Acetyltransf_1 PF00583.25 CQR56991.1 - 1.2e-09 38.5 0.1 1.6e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR56991.1 - 4.3e-08 33.5 0.1 6.6e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR56991.1 - 0.00013 21.9 0.0 0.00024 21.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR56991.1 - 0.00055 20.0 0.1 0.00071 19.7 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Methyltransf_25 PF13649.6 CQR56992.1 - 3.1e-13 50.2 0.0 4.9e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR56992.1 - 7.7e-10 39.3 0.0 1.3e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR56992.1 - 3.2e-09 36.7 0.0 6.6e-09 35.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR56992.1 - 8e-09 35.5 0.0 2.3e-08 34.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR56992.1 - 8.5e-06 26.4 0.0 1.9e-05 25.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 CQR56992.1 - 1.3e-05 24.7 0.0 2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 CQR56992.1 - 0.0012 18.5 0.0 0.0027 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 CQR56992.1 - 0.0012 18.5 0.0 0.0063 16.2 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 CQR56992.1 - 0.004 16.5 0.0 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 CQR56992.1 - 0.048 13.0 0.0 0.12 11.7 0.0 1.6 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Bin3 PF06859.12 CQR56992.1 - 0.083 13.5 0.1 0.22 12.2 0.0 1.8 2 0 0 2 2 1 0 Bicoid-interacting protein 3 (Bin3) NodS PF05401.11 CQR56992.1 - 0.093 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.19 CQR56992.1 - 0.12 12.5 0.1 5 7.2 0.1 2.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase APH PF01636.23 CQR56993.1 - 1e-14 55.0 0.0 1.5e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 CQR56993.1 - 7.4e-10 38.6 0.1 1.8e-09 37.3 0.1 1.6 1 1 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.20 CQR56993.1 - 3.9e-06 26.6 0.2 6e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase DUF1679 PF07914.11 CQR56993.1 - 2.3e-05 23.4 0.1 8.1e-05 21.6 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1679) MerR PF00376.23 CQR56994.1 - 1.2e-27 95.4 0.4 6.2e-15 54.7 0.0 2.3 2 0 0 2 2 2 2 MerR family regulatory protein MerR_1 PF13411.6 CQR56994.1 - 3.4e-25 87.9 0.0 2.5e-14 53.1 0.0 2.4 2 0 0 2 2 2 2 MerR HTH family regulatory protein HTH_17 PF12728.7 CQR56994.1 - 3.5e-06 27.1 0.2 0.067 13.4 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_3 PF01381.22 CQR56994.1 - 3.8e-06 26.9 0.0 0.22 11.6 0.0 3.3 2 1 1 3 3 3 2 Helix-turn-helix HTH_23 PF13384.6 CQR56994.1 - 2.3e-05 24.1 0.0 0.07 12.9 0.0 2.5 2 0 0 2 2 2 2 Homeodomain-like domain AbiEi_4 PF13338.6 CQR56994.1 - 4.1e-05 23.7 0.0 0.42 10.8 0.0 4.1 4 0 0 4 4 4 1 Transcriptional regulator, AbiEi antitoxin HTH_29 PF13551.6 CQR56994.1 - 0.00011 22.2 0.1 0.26 11.3 0.0 2.6 2 1 0 2 2 2 2 Winged helix-turn helix HTH_31 PF13560.6 CQR56994.1 - 0.0016 18.8 0.0 0.39 11.1 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR56994.1 - 0.0028 17.5 0.0 0.1 12.5 0.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 CQR56994.1 - 0.0035 17.0 0.0 3.8 7.3 0.0 2.9 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_28 PF13518.6 CQR56994.1 - 0.0051 16.9 0.0 1.4 9.1 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR56994.1 - 0.011 15.8 0.0 2 8.5 0.0 3.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR56994.1 - 0.013 15.4 2.3 0.031 14.2 0.0 2.7 3 1 0 3 3 3 0 HTH domain MarR_2 PF12802.7 CQR56994.1 - 0.015 15.2 0.0 4.5 7.2 0.0 3.1 2 1 0 2 2 2 0 MarR family HTH_Tnp_1 PF01527.20 CQR56994.1 - 0.039 14.3 0.0 1.3 9.4 0.0 2.6 2 0 0 2 2 2 0 Transposase HTH_IclR PF09339.10 CQR56994.1 - 0.046 13.5 0.0 1.9 8.3 0.0 2.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR PF01047.22 CQR56994.1 - 0.058 13.3 0.0 12 5.9 0.0 2.9 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 CQR56994.1 - 0.059 13.1 0.1 0.35 10.7 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 CQR56994.1 - 0.066 13.3 0.9 0.47 10.6 0.2 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Phage_terminase PF10668.9 CQR56994.1 - 0.07 13.2 0.0 5 7.2 0.0 2.5 2 0 0 2 2 2 0 Phage terminase small subunit SAM_DrpA PF18255.1 CQR56994.1 - 0.12 12.6 1.0 0.59 10.4 0.1 2.2 2 0 0 2 2 2 0 DNA processing protein A sterile alpha motif domain HTH_DeoR PF08220.12 CQR56994.1 - 0.34 10.7 1.8 1.4 8.7 0.1 2.8 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain MetOD2 PF18548.1 CQR56994.1 - 0.41 10.8 3.5 2 8.6 0.2 2.5 2 0 0 2 2 2 0 Metanogen output domain 2 RCC1_2 PF13540.6 CQR56996.1 - 4.9e-45 150.5 32.8 7.4e-08 32.0 0.3 8.0 7 1 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.18 CQR56996.1 - 0.0011 19.6 39.3 17 6.2 0.2 12.1 8 6 6 14 14 14 1 Regulator of chromosome condensation (RCC1) repeat AOC_like PF18678.1 CQR56996.1 - 0.0099 15.5 13.6 4.2 7.0 0.2 5.5 2 2 2 5 5 5 2 Allene oxide cyclase barrel like domain ShK PF01549.24 CQR56996.1 - 0.021 15.4 2.5 7.2 7.2 0.0 4.9 6 0 0 6 6 6 0 ShK domain-like Porin_1 PF00267.21 CQR56996.1 - 0.11 11.9 2.1 0.78 9.1 0.2 2.4 1 1 1 2 2 2 0 Gram-negative porin iPGM_N PF06415.13 CQR56996.1 - 0.11 11.9 1.2 14 5.1 0.1 3.8 4 2 0 4 4 4 0 BPG-independent PGAM N-terminus (iPGM_N) Lyase_8_C PF02884.17 CQR56996.1 - 0.15 12.6 2.9 27 5.3 0.2 3.3 2 1 1 3 3 3 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Glyoxal_oxid_N PF07250.11 CQR56996.1 - 0.27 10.4 2.4 0.2 10.8 0.5 1.7 2 0 0 2 2 2 0 Glyoxal oxidase N-terminus Auxin_resp PF06507.13 CQR56996.1 - 2.2 8.6 7.4 47 4.3 0.0 4.5 6 0 0 6 6 6 0 Auxin response factor DUF5122 PF17164.4 CQR56996.1 - 9.4 6.6 12.1 58 4.1 0.0 6.3 7 1 0 7 7 7 0 Domain of unknown function (DUF5122) beta-propeller AATase PF07247.12 CQR56997.1 - 0.068 11.7 0.0 0.08 11.5 0.0 1.1 1 0 0 1 1 1 0 Alcohol acetyltransferase DUF5586 PF17824.1 CQR56997.1 - 0.12 11.5 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5586) DUF3969 PF13108.6 CQR56998.1 - 4.4e-16 58.8 0.6 4.8e-16 58.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3969) Ead_Ea22 PF13935.6 CQR56998.1 - 0.1 13.3 0.2 0.12 13.0 0.2 1.1 1 0 0 1 1 1 0 Ead/Ea22-like protein DUF3806 PF12713.7 CQR57000.1 - 0.026 14.3 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) RNR_N PF08343.10 CQR57000.1 - 0.03 14.3 0.0 0.078 13.0 0.0 1.7 1 0 0 1 1 1 0 Ribonucleotide reductase N-terminal DUF2387 PF09526.10 CQR57003.1 - 0.0091 16.1 0.2 0.019 15.1 0.2 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.6 CQR57003.1 - 0.021 14.9 0.2 0.047 13.8 0.2 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_Rg PF17915.1 CQR57003.1 - 0.076 12.4 1.0 0.094 12.1 0.0 1.7 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-RRN7 PF11781.8 CQR57003.1 - 0.17 11.6 3.9 6.5 6.5 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RHS_repeat PF05593.14 CQR57005.1 - 7.6e-05 23.1 7.7 0.0083 16.6 3.8 3.9 3 0 0 3 3 3 2 RHS Repeat RHS_repeat PF05593.14 CQR57008.1 - 1e-122 399.5 129.3 7.4e-09 35.9 0.4 29.0 15 7 12 30 30 30 27 RHS Repeat ANAPC4_WD40 PF12894.7 CQR57008.1 - 0.0076 16.5 0.0 0.66 10.3 0.0 3.8 3 1 1 4 4 4 1 Anaphase-promoting complex subunit 4 WD40 domain HTH_15 PF12324.8 CQR57008.1 - 0.08 12.9 1.0 54 3.8 0.0 4.5 5 0 0 5 5 5 0 Helix-turn-helix domain of alkylmercury lyase NPHI_C PF08469.10 CQR57008.1 - 1.3 8.9 4.4 0.64 10.0 0.1 2.6 3 0 0 3 3 3 0 Nucleoside triphosphatase I C-terminal SLH PF00395.20 CQR57009.1 - 3.2e-33 113.5 1.3 2.4e-12 46.6 0.0 4.0 4 0 0 4 4 4 3 S-layer homology domain Sigma70_r2 PF04542.14 CQR57010.1 - 2.6e-17 62.3 0.0 5.8e-17 61.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR57010.1 - 1.9e-16 59.3 4.7 3.4e-15 55.3 2.5 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 CQR57010.1 - 1.7e-14 53.6 0.7 9.5e-12 44.8 0.4 2.3 2 0 0 2 2 2 2 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 CQR57010.1 - 4.9e-08 32.5 1.8 2.4e-07 30.3 0.6 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 CQR57010.1 - 1.2e-05 25.2 0.5 0.0032 17.5 0.4 2.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 CQR57010.1 - 1.9e-05 24.3 1.3 0.0039 16.9 1.3 3.3 3 0 0 3 3 3 1 Homeodomain-like domain KORA PF16509.5 CQR57010.1 - 0.00028 21.1 0.4 0.0015 18.8 0.2 2.3 2 0 0 2 2 2 1 TrfB plasmid transcriptional repressor MarR_2 PF12802.7 CQR57010.1 - 0.00086 19.2 0.2 0.095 12.6 0.1 2.7 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 CQR57010.1 - 0.0011 19.2 1.3 0.042 14.2 0.4 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 CQR57010.1 - 0.0039 17.1 0.2 0.01 15.8 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR57010.1 - 0.0045 17.4 0.0 0.96 9.9 0.1 2.5 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 CQR57010.1 - 0.0051 16.7 0.4 0.37 10.8 0.1 2.9 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_19 PF12844.7 CQR57010.1 - 0.01 15.8 0.3 0.26 11.3 0.2 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 CQR57010.1 - 0.019 14.7 3.8 0.068 12.9 0.0 2.9 3 0 0 3 3 3 0 MerR family regulatory protein HTH_28 PF13518.6 CQR57010.1 - 0.023 14.8 0.2 1.1 9.4 0.2 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF722 PF05263.11 CQR57010.1 - 0.024 14.9 0.1 0.048 13.9 0.1 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF722) HTH_10 PF04967.12 CQR57010.1 - 0.029 14.2 0.1 2.4 8.0 0.1 2.8 2 1 0 2 2 2 0 HTH DNA binding domain YdaS_antitoxin PF15943.5 CQR57010.1 - 0.036 13.9 0.1 4 7.4 0.1 2.4 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MerR_1 PF13411.6 CQR57010.1 - 0.038 14.1 0.3 2.6 8.2 0.0 3.3 3 1 0 3 3 3 0 MerR HTH family regulatory protein HTH_24 PF13412.6 CQR57010.1 - 0.071 12.7 1.1 4.9 6.8 0.1 3.8 3 1 1 4 4 4 0 Winged helix-turn-helix DNA-binding HTH_8 PF02954.19 CQR57010.1 - 0.079 12.8 0.1 2.6 7.9 0.1 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_38 PF13936.6 CQR57010.1 - 0.084 12.6 0.2 0.72 9.7 0.2 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain DUF134 PF02001.16 CQR57010.1 - 0.11 13.1 0.2 0.27 11.8 0.1 1.8 2 0 0 2 2 1 0 Protein of unknown function DUF134 Trp_repressor PF01371.19 CQR57010.1 - 0.13 12.4 1.6 0.37 10.9 0.6 2.1 2 0 0 2 2 2 0 Trp repressor protein HATPase_c_2 PF13581.6 CQR57011.1 - 9.8e-25 86.9 0.0 1.1e-24 86.7 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 CQR57011.1 - 1.2e-11 45.1 0.1 1.7e-11 44.6 0.1 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apolipo_F PF15148.6 CQR57011.1 - 0.022 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein F HATPase_c_3 PF13589.6 CQR57011.1 - 0.062 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STAS PF01740.21 CQR57012.1 - 1e-22 80.0 0.0 1.1e-22 79.8 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 CQR57012.1 - 3.3e-11 43.4 0.1 4.7e-11 42.9 0.1 1.1 1 0 0 1 1 1 1 STAS domain Peptidase_S11 PF00768.20 CQR57013.1 - 5.7e-78 261.7 0.5 5.7e-78 261.7 0.5 1.5 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase PBP5_C PF07943.13 CQR57013.1 - 1.5e-14 54.0 5.3 3.4e-14 52.8 5.3 1.6 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase2 PF13354.6 CQR57013.1 - 8.9e-11 41.8 0.1 2.3e-10 40.4 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase enzyme family Beta-lactamase PF00144.24 CQR57013.1 - 0.00044 19.6 0.0 0.0024 17.2 0.0 2.1 1 1 0 1 1 1 1 Beta-lactamase Peptidase_S13 PF02113.15 CQR57013.1 - 0.0025 16.6 0.1 0.0041 15.9 0.1 1.3 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Acyl_transf_3 PF01757.22 CQR57014.1 - 1e-16 61.0 34.6 1.2e-16 60.7 34.6 1.0 1 0 0 1 1 1 1 Acyltransferase family ABC_tran PF00005.27 CQR57015.1 - 6.2e-32 111.0 0.0 8.5e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR57015.1 - 1.1e-20 73.9 0.1 2.2e-20 72.9 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR57015.1 - 3e-05 24.0 0.0 0.037 13.9 0.0 2.4 1 1 2 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR57015.1 - 0.00017 22.0 0.0 0.00026 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 CQR57015.1 - 0.0015 18.0 0.0 0.0075 15.7 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR57015.1 - 0.0053 17.0 0.5 0.022 15.0 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR57015.1 - 0.031 14.0 0.1 0.059 13.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 CQR57015.1 - 0.052 12.8 0.0 0.087 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AIG1 PF04548.16 CQR57015.1 - 0.08 12.3 0.1 0.13 11.5 0.1 1.3 1 0 0 1 1 1 0 AIG1 family Sigma54_activat PF00158.26 CQR57015.1 - 0.095 12.4 0.1 2 8.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 CQR57015.1 - 0.098 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF87 PF01935.17 CQR57015.1 - 0.098 12.7 0.1 0.23 11.5 0.1 1.6 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_13 PF13166.6 CQR57015.1 - 0.34 9.5 0.1 0.57 8.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 CQR57016.1 - 7.6e-29 101.0 0.0 1.1e-28 100.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR57016.1 - 4e-21 75.3 0.0 6.9e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR57016.1 - 4.7e-08 32.7 0.1 6.6e-08 32.3 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR57016.1 - 8.7e-05 22.5 0.0 0.00024 21.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ATP-synt_ab PF00006.25 CQR57016.1 - 0.006 16.3 0.2 0.0086 15.7 0.2 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.6 CQR57016.1 - 0.023 15.0 0.4 0.17 12.2 0.4 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 CQR57016.1 - 0.052 12.9 0.2 2 7.8 0.1 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 CQR57016.1 - 0.11 12.9 0.2 0.66 10.4 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RTP801_C PF07809.11 CQR57016.1 - 0.16 11.9 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 RTP801 C-terminal region Peptidase_M20 PF01546.28 CQR57017.1 - 2.4e-33 115.6 0.0 4.3e-33 114.8 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR57017.1 - 6.4e-20 71.1 0.0 1e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 CQR57017.1 - 0.002 17.8 0.0 0.081 12.6 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 SBP_bac_5 PF00496.22 CQR57018.1 - 1.9e-96 323.3 9.0 3.1e-96 322.6 9.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 CQR57019.1 - 2.5e-31 108.9 8.9 2.5e-31 108.9 8.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR57019.1 - 7.6e-09 35.4 0.7 7.6e-09 35.4 0.7 2.1 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 CQR57020.1 - 6.2e-44 149.9 10.9 6.2e-44 149.9 10.9 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PucR PF07905.11 CQR57021.1 - 5.9e-32 110.4 0.0 1.1e-31 109.5 0.0 1.5 1 0 0 1 1 1 1 Purine catabolism regulatory protein-like family HTH_30 PF13556.6 CQR57021.1 - 1.8e-19 69.2 0.1 4.8e-19 67.9 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GGDEF_2 PF17853.1 CQR57021.1 - 9.3e-14 51.7 0.0 2e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 GGDEF-like domain DSBA PF01323.20 CQR57022.1 - 1.2e-36 126.3 0.3 1.5e-36 126.0 0.3 1.1 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 CQR57022.1 - 5.8e-10 39.6 0.4 1.6e-08 34.9 0.4 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_5 PF13743.6 CQR57022.1 - 9.6e-07 28.7 0.2 2.1e-06 27.5 0.2 1.7 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 CQR57022.1 - 0.00093 19.6 0.0 0.053 14.0 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 CQR57022.1 - 0.002 18.1 0.1 0.029 14.4 0.0 2.5 3 0 0 3 3 3 1 Thioredoxin domain DUF1525 PF07511.11 CQR57022.1 - 0.032 14.4 0.2 0.069 13.3 0.0 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1525) Methyltransf_25 PF13649.6 CQR57023.1 - 2.4e-08 34.6 0.0 4.5e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57023.1 - 4.3e-08 33.2 0.0 1.2e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR57023.1 - 6.1e-08 33.2 0.0 1.2e-07 32.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 CQR57023.1 - 1.5e-05 24.2 0.0 1.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.16 CQR57023.1 - 2.3e-05 24.2 0.0 3.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 CQR57023.1 - 5.2e-05 23.1 0.0 7.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR57023.1 - 5.7e-05 23.8 0.0 0.00017 22.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 CQR57023.1 - 0.0019 17.6 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 CQR57023.1 - 0.002 17.9 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase NodS PF05401.11 CQR57023.1 - 0.0027 17.4 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Cons_hypoth95 PF03602.15 CQR57023.1 - 0.0041 16.8 0.0 0.0064 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 CQR57023.1 - 0.026 13.5 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 CQR57023.1 - 0.032 13.8 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF3197 PF11432.8 CQR57023.1 - 0.052 13.4 0.1 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3197) MFS_1 PF07690.16 CQR57024.1 - 2.1e-45 155.2 57.6 9.3e-45 153.1 54.6 2.2 2 0 0 2 2 2 2 Major Facilitator Superfamily Rrf2 PF02082.20 CQR57025.1 - 2e-25 88.9 0.0 3e-25 88.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 CQR57025.1 - 0.0022 17.6 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.19 CQR57025.1 - 0.0023 18.1 0.0 0.0037 17.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 CQR57025.1 - 0.003 17.5 0.0 0.005 16.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 CQR57025.1 - 0.0051 16.7 0.0 0.0086 16.0 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR57025.1 - 0.0066 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 CQR57025.1 - 0.0077 16.1 0.2 0.016 15.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 CQR57025.1 - 0.018 15.0 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 CQR57025.1 - 0.034 13.8 0.2 0.087 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 CQR57025.1 - 0.13 11.9 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MatE PF01554.18 CQR57026.1 - 5.7e-46 156.1 41.0 2.8e-28 98.6 12.2 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 CQR57026.1 - 7.8e-10 39.0 34.2 1.4e-08 34.9 19.3 4.6 2 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Asp_Glu_race PF01177.22 CQR57027.1 - 9.9e-12 45.2 0.8 6.9e-11 42.4 0.8 1.9 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 CQR57027.1 - 7.6e-05 22.2 0.0 0.00013 21.4 0.0 1.3 1 1 0 1 1 1 1 AroM protein Pantoate_transf PF02548.15 CQR57027.1 - 0.00039 19.9 2.4 0.003 17.0 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate hydroxymethyltransferase Amdase PF17645.1 CQR57027.1 - 0.03 13.9 0.1 0.49 10.0 0.1 2.2 2 0 0 2 2 2 0 Arylmalonate decarboxylase Peptidase_M29 PF02073.15 CQR57028.1 - 1e-10 41.0 0.0 3.3e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 Thermophilic metalloprotease (M29) CagE_TrbE_VirB PF03135.14 CQR57028.1 - 0.063 13.4 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system Toprim_3 PF13362.6 CQR57028.1 - 0.12 12.8 0.2 0.42 11.0 0.1 1.9 1 1 0 1 1 1 0 Toprim domain FGase PF05013.12 CQR57028.1 - 0.16 12.1 0.1 0.26 11.5 0.1 1.2 1 0 0 1 1 1 0 N-formylglutamate amidohydrolase AroM PF07302.11 CQR57029.1 - 1.5e-71 240.3 0.0 1.7e-71 240.1 0.0 1.0 1 0 0 1 1 1 1 AroM protein DUF1177 PF06675.11 CQR57030.1 - 3.1e-137 455.8 0.2 3.6e-137 455.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1177) Beta-lactamase PF00144.24 CQR57031.1 - 1.7e-50 172.1 0.5 2.2e-50 171.8 0.5 1.0 1 0 0 1 1 1 1 Beta-lactamase GyrI-like PF06445.15 CQR57032.1 - 1.2e-23 84.1 0.0 1.4e-23 83.9 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 CQR57032.1 - 1e-12 48.5 0.0 1.1e-12 48.4 0.0 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein Glycos_transf_3 PF00591.21 CQR57033.1 - 1.2e-41 143.0 5.8 1.9e-41 142.4 5.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 CQR57033.1 - 4e-22 77.6 1.8 4e-22 77.6 1.8 1.9 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 CQR57033.1 - 1.1e-21 76.4 0.8 3.2e-21 74.9 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain Biotin_lipoyl PF00364.22 CQR57033.1 - 0.0068 16.2 0.6 1.1 9.1 0.1 2.8 2 0 0 2 2 2 2 Biotin-requiring enzyme ANF_receptor PF01094.28 CQR57033.1 - 0.035 13.2 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region PNP_UDP_1 PF01048.20 CQR57034.1 - 1.5e-49 168.4 0.1 1.7e-49 168.2 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PNP_UDP_1 PF01048.20 CQR57035.1 - 8.9e-56 188.8 0.8 1e-55 188.6 0.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Metalloenzyme PF01676.18 CQR57036.1 - 3.9e-34 118.1 0.0 9.2e-34 116.9 0.0 1.5 1 1 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 CQR57036.1 - 0.0085 15.5 0.0 0.024 14.1 0.0 1.7 1 1 1 2 2 2 1 Sulfatase Phosphodiest PF01663.22 CQR57036.1 - 0.045 13.3 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Phage_integrase PF00589.22 CQR57037.1 - 8.8e-46 155.8 0.0 1.4e-45 155.2 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 CQR57037.1 - 1.3e-20 73.4 0.3 3.6e-19 68.9 0.1 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 CQR57037.1 - 1.3e-11 44.8 0.0 4e-11 43.2 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 CQR57037.1 - 0.0053 15.7 0.1 0.0094 14.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) Phage_int_SAM_5 PF13102.6 CQR57037.1 - 0.017 15.5 0.0 1.8 8.9 0.0 2.7 2 1 1 3 3 3 0 Phage integrase SAM-like domain CobT PF06213.12 CQR57037.1 - 0.15 11.5 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF4227 PF14004.6 CQR57038.1 - 3.4e-18 65.4 0.1 4.1e-18 65.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4227) FUR PF01475.19 CQR57039.1 - 3.1e-37 127.4 0.2 3.9e-37 127.0 0.2 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family SpoIIM PF01944.17 CQR57040.1 - 6.5e-23 81.5 11.9 8.1e-23 81.2 11.9 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M LapA_dom PF06305.11 CQR57040.1 - 0.0061 16.3 0.2 0.0061 16.3 0.2 4.1 3 1 1 4 4 4 1 Lipopolysaccharide assembly protein A domain PHP_C PF13263.6 CQR57041.1 - 6.9e-06 25.7 0.0 2.7e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 PHP-associated zf-C2HC5 PF06221.13 CQR57041.1 - 0.0084 16.1 0.1 0.016 15.2 0.1 1.4 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 CQR57041.1 - 0.04 13.9 1.0 0.081 13.0 1.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 CQR57041.1 - 0.044 13.7 2.0 0.046 13.7 0.5 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 CQR57041.1 - 0.048 13.7 0.4 0.12 12.4 0.4 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 CQR57041.1 - 0.086 12.4 2.4 7.3 6.2 0.2 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding NUDIX PF00293.28 CQR57042.1 - 1e-18 67.6 0.0 1.4e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain SICA_C PF12879.7 CQR57042.1 - 0.17 11.9 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 SICA C-terminal inner membrane domain MciZ PF13072.6 CQR57043.1 - 0.012 15.4 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Mother cell inhibitor of FtsZ Peptidase_M20 PF01546.28 CQR57044.1 - 2.4e-20 73.1 1.6 3.7e-20 72.5 0.8 1.7 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR57044.1 - 2.3e-15 56.4 0.5 3.1e-13 49.6 0.2 2.4 2 0 0 2 2 2 2 Peptidase dimerisation domain Peptidase_M42 PF05343.14 CQR57044.1 - 2.2e-12 46.6 0.0 2.2e-06 26.9 0.0 3.2 3 0 0 3 3 3 2 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 CQR57044.1 - 4.3e-12 46.1 0.0 4.3e-10 39.6 0.1 2.2 2 0 0 2 2 2 2 Peptidase family M28 DUF4044 PF13253.6 CQR57045.1 - 0.0084 15.6 1.3 0.0087 15.5 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4044) BPL_LplA_LipB PF03099.19 CQR57046.1 - 4.8e-06 26.5 0.0 7.2e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family 2-oxoacid_dh PF00198.23 CQR57047.1 - 1.1e-73 247.6 0.5 1.7e-73 246.9 0.5 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 CQR57047.1 - 1.4e-18 66.5 0.1 2.7e-18 65.6 0.1 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 CQR57047.1 - 2.1e-13 50.4 1.2 4.9e-13 49.2 0.1 2.3 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 CQR57047.1 - 0.00021 21.0 0.1 0.00052 19.8 0.1 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like HlyD_3 PF13437.6 CQR57047.1 - 0.018 15.7 0.3 0.093 13.4 0.2 2.1 1 1 1 2 2 2 0 HlyD family secretion protein SMP_C2CD2L PF18696.1 CQR57047.1 - 0.077 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Synaptotagmin-like, mitochondrial and lipid-binding domain Ribosomal_60s PF00428.19 CQR57047.1 - 0.46 11.1 37.6 0.039 14.5 9.9 3.6 2 1 1 3 3 3 0 60s Acidic ribosomal protein Transket_pyr PF02779.24 CQR57048.1 - 6e-49 166.1 0.0 1.1e-48 165.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 CQR57048.1 - 5.3e-38 129.7 0.0 8.9e-38 129.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 CQR57048.1 - 0.0075 16.6 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 CQR57049.1 - 6.2e-93 311.0 0.0 7.1e-93 310.8 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 CQR57049.1 - 2.5e-05 24.1 0.0 0.00035 20.4 0.0 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 CQR57049.1 - 0.00022 20.3 0.0 0.0004 19.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 CQR57049.1 - 0.0028 16.9 0.0 0.01 15.1 0.0 1.8 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Pyr_redox_2 PF07992.14 CQR57050.1 - 1.7e-63 214.6 6.1 2.1e-63 214.3 6.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 CQR57050.1 - 1.8e-35 121.5 0.1 1.8e-35 121.5 0.1 2.2 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 CQR57050.1 - 3.5e-22 78.7 11.3 7.6e-20 71.3 1.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 CQR57050.1 - 3.8e-11 42.7 9.7 4.8e-10 39.1 0.5 2.7 2 1 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 CQR57050.1 - 1.1e-07 31.5 3.4 5.5e-05 22.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 CQR57050.1 - 1.1e-07 31.6 0.9 1.1e-07 31.6 0.9 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 CQR57050.1 - 1.4e-06 28.3 3.0 0.00011 22.1 0.3 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 CQR57050.1 - 2.1e-06 27.2 5.2 0.011 15.1 0.2 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 CQR57050.1 - 5.4e-06 26.2 12.9 0.023 14.3 0.2 3.7 4 0 0 4 4 4 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR57050.1 - 1.2e-05 24.7 5.2 0.0045 16.3 0.4 2.5 2 0 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.6 CQR57050.1 - 1.4e-05 24.5 0.1 8.8e-05 21.8 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 CQR57050.1 - 9.1e-05 21.3 13.4 0.0013 17.5 1.2 3.1 2 1 1 3 3 3 3 HI0933-like protein NAD_binding_8 PF13450.6 CQR57050.1 - 9.2e-05 22.6 11.5 0.0014 18.8 1.4 2.9 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR57050.1 - 0.00011 21.4 3.0 0.00011 21.4 3.0 3.8 4 0 0 4 4 4 1 FAD binding domain NAD_binding_7 PF13241.6 CQR57050.1 - 0.0051 17.2 1.5 0.13 12.7 0.2 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Trp_halogenase PF04820.14 CQR57050.1 - 0.013 14.4 10.3 0.021 13.7 0.2 2.6 3 0 0 3 3 3 0 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 CQR57050.1 - 0.039 13.3 1.0 0.16 11.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 CQR57050.1 - 0.044 13.0 4.0 3.1 7.0 0.3 2.5 2 0 0 2 2 2 0 Thi4 family DUF384 PF04064.13 CQR57050.1 - 0.046 13.6 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF384) XdhC_C PF13478.6 CQR57050.1 - 0.056 14.0 0.1 0.47 11.0 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.18 CQR57050.1 - 0.27 11.5 6.2 1.7 8.9 0.6 3.1 2 1 1 3 3 3 0 TrkA-N domain Lycopene_cycl PF05834.12 CQR57050.1 - 0.94 8.5 5.6 1.7 7.6 0.2 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 CQR57050.1 - 1.6 8.3 11.8 0.85 9.2 1.3 2.8 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2627 PF11118.8 CQR57051.1 - 9.6e-30 103.0 1.4 1.2e-29 102.7 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2627) YiaAB PF05360.14 CQR57051.1 - 5.6 7.3 8.6 11 6.3 0.1 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain ABC_membrane PF00664.23 CQR57052.1 - 2.8e-61 207.6 9.8 3.5e-61 207.2 9.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR57052.1 - 5.6e-34 117.6 0.0 1e-33 116.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57052.1 - 4.5e-05 23.4 0.3 0.064 13.0 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR57052.1 - 0.00038 20.9 0.0 0.0018 18.7 0.0 2.1 3 0 0 3 3 3 1 AAA ATPase domain SMC_N PF02463.19 CQR57052.1 - 0.00062 19.3 0.4 0.023 14.1 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR57052.1 - 0.0016 18.7 0.2 0.016 15.5 0.2 2.5 1 1 0 1 1 1 1 AAA domain ABC_membrane_2 PF06472.15 CQR57052.1 - 0.0029 17.0 1.8 0.0068 15.9 1.8 1.5 1 1 0 1 1 1 1 ABC transporter transmembrane region 2 SRP54 PF00448.22 CQR57052.1 - 0.011 15.4 0.3 0.039 13.6 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 CQR57052.1 - 0.013 15.2 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR57052.1 - 0.013 16.0 0.1 0.027 15.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 CQR57052.1 - 0.014 15.1 0.0 0.053 13.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 CQR57052.1 - 0.016 14.9 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR57052.1 - 0.017 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 CQR57052.1 - 0.022 15.2 0.6 0.27 11.7 0.6 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_membrane_3 PF13748.6 CQR57052.1 - 0.046 13.0 8.9 0.11 11.7 6.3 2.5 2 1 0 2 2 2 0 ABC transporter transmembrane region Zeta_toxin PF06414.12 CQR57052.1 - 0.076 12.3 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AI-2E_transport PF01594.16 CQR57052.1 - 0.083 12.0 8.4 0.13 11.4 6.6 2.2 2 1 0 2 2 2 0 AI-2E family transporter TsaE PF02367.17 CQR57052.1 - 0.097 12.7 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 CQR57052.1 - 0.12 12.9 0.0 0.31 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR57052.1 - 0.31 10.6 1.3 1.3 8.5 0.1 2.5 4 0 0 4 4 4 0 AAA domain ABC_membrane PF00664.23 CQR57053.1 - 1.4e-39 136.5 18.9 1.8e-39 136.1 18.9 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR57053.1 - 4.9e-32 111.3 0.0 1e-31 110.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter DUF87 PF01935.17 CQR57053.1 - 0.0014 18.7 0.0 0.0029 17.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 CQR57053.1 - 0.0023 18.3 0.1 0.0085 16.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 CQR57053.1 - 0.0029 17.1 2.8 0.17 11.3 0.0 2.5 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR57053.1 - 0.015 15.0 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR57053.1 - 0.086 12.7 0.0 0.26 11.2 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase TetR_C_22 PF17928.1 CQR57054.1 - 0.0062 16.9 0.0 0.0084 16.4 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain MerR_2 PF13591.6 CQR57054.1 - 0.038 13.8 0.5 0.049 13.5 0.5 1.2 1 0 0 1 1 1 0 MerR HTH family regulatory protein TetR_C_21 PF17926.1 CQR57054.1 - 0.071 13.3 0.1 0.072 13.2 0.1 1.0 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TK PF00265.18 CQR57055.1 - 4.4e-50 170.0 0.1 4.9e-50 169.8 0.1 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_30 PF13604.6 CQR57055.1 - 0.021 14.5 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 CQR57055.1 - 0.022 14.8 0.0 0.045 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 CQR57055.1 - 0.026 14.8 0.0 0.065 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain KdpD PF02702.17 CQR57055.1 - 0.19 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain DUF2007 PF09413.10 CQR57056.1 - 0.0018 18.4 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 Putative prokaryotic signal transducing protein DinB_2 PF12867.7 CQR57057.1 - 5.4e-17 62.5 0.0 6.6e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR57057.1 - 1.7e-09 38.2 0.0 2.1e-09 37.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF664) DinB PF05163.12 CQR57057.1 - 4.3e-08 33.3 0.0 5.4e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 DinB family MDMPI_N PF11716.8 CQR57057.1 - 0.00014 22.6 0.0 0.00021 22.0 0.0 1.3 1 1 0 1 1 1 1 Mycothiol maleylpyruvate isomerase N-terminal domain KAR PF15222.6 CQR57057.1 - 0.075 13.3 0.0 2.6 8.4 0.0 2.1 1 1 1 2 2 2 0 Kidney androgen-regulated AgrB PF04647.15 CQR57059.1 - 1.3e-18 67.0 13.4 1.7e-18 66.6 13.4 1.1 1 0 0 1 1 1 1 Accessory gene regulator B Baculo_11_kDa PF06143.11 CQR57059.1 - 4.8 6.8 6.0 0.55 9.8 1.2 1.9 2 0 0 2 2 2 0 Baculovirus 11 kDa family LytTR PF04397.15 CQR57060.1 - 2e-13 50.4 0.1 2.4e-13 50.1 0.1 1.1 1 0 0 1 1 1 1 LytTr DNA-binding domain Sda PF08970.10 CQR57061.1 - 2e-12 46.6 0.3 2.4e-12 46.4 0.3 1.1 1 0 0 1 1 1 1 Sporulation inhibitor A Pox_EPC_I2-L1 PF12575.8 CQR57061.1 - 0.033 14.4 0.0 0.041 14.1 0.0 1.2 1 0 0 1 1 1 0 Poxvirus entry protein complex L1 and I2 UvrA_DNA-bind PF17755.1 CQR57063.1 - 0.0023 18.3 0.0 2.2 8.7 0.0 2.1 1 1 1 2 2 2 2 UvrA DNA-binding domain FlxA PF14282.6 CQR57064.1 - 1.7e-08 34.3 27.8 1.7e-08 34.3 27.8 2.7 2 1 0 2 2 2 1 FlxA-like protein Spc7 PF08317.11 CQR57064.1 - 0.0084 15.0 26.3 0.072 12.0 15.5 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein Allexi_40kDa PF05549.11 CQR57064.1 - 0.015 14.8 20.2 0.25 10.8 1.3 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein HCMV_UL139 PF12507.8 CQR57064.1 - 0.26 11.7 5.2 1.6 9.1 1.8 2.8 3 1 0 3 3 3 0 Human Cytomegalovirus UL139 protein DUF3375 PF11855.8 CQR57064.1 - 1.2 8.0 12.7 0.49 9.2 4.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3375) DUF1664 PF07889.12 CQR57064.1 - 1.5 8.9 19.2 2.5 8.1 8.8 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) PKcGMP_CC PF16808.5 CQR57064.1 - 1.5 8.7 10.3 7.9 6.4 0.2 3.9 3 1 1 4 4 4 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Csm1_N PF18504.1 CQR57064.1 - 3.4 8.1 24.3 15 6.0 3.8 4.3 2 1 1 3 3 3 0 Csm1 N-terminal domain NPV_P10 PF05531.12 CQR57064.1 - 3.8 8.0 18.8 1.5 9.4 0.9 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF5320 PF17253.2 CQR57064.1 - 9.5 7.4 9.9 1.1 10.4 0.9 3.1 2 1 1 3 3 3 0 Family of unknown function (DUF5320) NAGPA PF09992.9 CQR57065.1 - 1.9e-30 106.3 5.2 5.5e-27 95.0 0.8 3.9 3 0 0 3 3 3 2 Phosphodiester glycosidase SLH PF00395.20 CQR57065.1 - 2.4e-27 94.7 5.2 1e-08 35.0 0.0 4.3 4 0 0 4 4 4 3 S-layer homology domain Big_2 PF02368.18 CQR57065.1 - 9.6e-23 79.9 37.1 9.4e-11 41.5 3.4 8.1 8 0 0 8 8 8 4 Bacterial Ig-like domain (group 2) Pur_ac_phosph_N PF16656.5 CQR57065.1 - 7e-19 68.2 1.0 7e-19 68.2 1.0 3.2 2 0 0 2 2 2 1 Purple acid Phosphatase, N-terminal domain Metallophos PF00149.28 CQR57065.1 - 7.5e-17 62.5 2.1 1.3e-16 61.7 2.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PhoD_N PF16655.5 CQR57065.1 - 0.0044 17.5 1.7 0.031 14.8 0.1 3.0 2 0 0 2 2 2 1 PhoD-like phosphatase, N-terminal domain Spo0A_C PF08769.11 CQR57066.1 - 1.7e-45 153.3 2.1 1.9e-45 153.2 0.8 1.7 2 0 0 2 2 2 1 Sporulation initiation factor Spo0A C terminal Response_reg PF00072.24 CQR57066.1 - 1.2e-26 93.1 0.2 2e-26 92.4 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_Tnp_ISL3 PF13542.6 CQR57066.1 - 0.0013 18.1 0.0 0.87 9.0 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 PrpR_N PF06506.11 CQR57066.1 - 0.087 12.4 0.0 0.47 10.0 0.0 2.1 2 0 0 2 2 2 0 Propionate catabolism activator Peptidase_S55 PF05580.12 CQR57067.1 - 2.8e-87 292.1 0.9 3.4e-87 291.8 0.3 1.4 2 0 0 2 2 2 1 SpoIVB peptidase S55 PDZ_6 PF17820.1 CQR57067.1 - 5.5e-06 26.1 0.1 3.2e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 PDZ domain PDZ_2 PF13180.6 CQR57067.1 - 0.0003 21.1 0.1 0.001 19.3 0.1 2.0 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 CQR57067.1 - 0.00067 20.0 0.9 0.0022 18.3 0.3 2.2 2 0 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 CQR57067.1 - 0.028 14.4 0.2 0.16 12.0 0.0 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain GRASP55_65 PF04495.14 CQR57067.1 - 0.041 14.2 0.0 0.41 11.0 0.0 2.1 2 0 0 2 2 2 0 GRASP55/65 PDZ-like domain Trypsin_2 PF13365.6 CQR57067.1 - 0.078 13.9 0.6 0.16 12.8 0.2 1.8 2 1 0 2 2 2 0 Trypsin-like peptidase domain SMC_N PF02463.19 CQR57068.1 - 2e-16 60.1 0.0 5.4e-16 58.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR57068.1 - 4.9e-13 50.1 2.2 7.3e-11 43.0 2.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 CQR57068.1 - 6.5e-06 26.2 0.1 0.034 14.0 0.0 2.6 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR57068.1 - 9.4e-05 22.1 0.0 0.00022 20.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR57068.1 - 0.0014 18.4 0.0 0.46 10.1 0.0 2.8 2 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 CQR57068.1 - 0.0051 17.1 0.3 1.3 9.3 0.1 2.8 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 CQR57068.1 - 0.048 14.2 0.4 0.56 10.7 0.2 2.8 2 2 0 2 2 2 0 ABC transporter NTPase_P4 PF11602.8 CQR57068.1 - 0.14 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 Spc7 PF08317.11 CQR57068.1 - 0.39 9.6 10.4 0.032 13.1 2.7 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF16 PF01519.16 CQR57068.1 - 0.44 11.1 2.8 1.3 9.6 0.1 2.8 1 1 0 2 2 2 0 Protein of unknown function DUF16 Rx_N PF18052.1 CQR57068.1 - 0.68 10.2 4.8 5.3 7.4 0.0 3.3 2 1 1 3 3 3 0 Rx N-terminal domain Trimer_CC PF08954.11 CQR57068.1 - 0.89 9.2 9.9 18 5.0 0.7 3.5 3 0 0 3 3 3 0 Trimerisation motif Arg_repressor PF01316.21 CQR57069.1 - 5e-28 96.7 0.5 7.2e-28 96.2 0.5 1.2 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain Arg_repressor_C PF02863.18 CQR57069.1 - 5e-27 93.6 0.2 8.4e-27 92.8 0.2 1.3 1 0 0 1 1 1 1 Arginine repressor, C-terminal domain Flg_hook PF02120.16 CQR57069.1 - 0.065 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK HTH_DeoR PF08220.12 CQR57069.1 - 0.19 11.5 0.9 0.46 10.3 0.9 1.6 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain FtsJ PF01728.19 CQR57071.1 - 1e-16 61.6 0.0 1.3e-16 61.2 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase S4 PF01479.25 CQR57071.1 - 9.8e-08 31.6 0.0 1.7e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 S4 domain Methyltransf_11 PF08241.12 CQR57071.1 - 0.026 15.1 0.0 0.052 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DXP_synthase_N PF13292.6 CQR57072.1 - 1.1e-123 411.8 0.1 1.7e-123 411.2 0.1 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 CQR57072.1 - 2.8e-37 128.1 1.2 3.3e-37 127.9 0.2 1.6 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 CQR57072.1 - 4.6e-28 97.6 0.0 1.4e-27 96.1 0.0 1.9 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 CQR57072.1 - 1.8e-07 31.1 0.0 4.7e-06 26.5 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFOR_II PF17147.4 CQR57072.1 - 8.7e-07 29.2 0.0 2.9e-06 27.5 0.0 1.9 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 CQR57072.1 - 0.00016 20.8 0.0 0.016 14.2 0.0 2.8 3 0 0 3 3 3 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 CQR57072.1 - 0.00069 18.7 0.0 0.0012 17.9 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component polyprenyl_synt PF00348.17 CQR57073.1 - 1.7e-60 204.2 0.0 2.2e-60 203.9 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Exonuc_VII_S PF02609.16 CQR57074.1 - 2.5e-21 75.5 1.6 3.9e-21 74.8 1.6 1.3 1 0 0 1 1 1 1 Exonuclease VII small subunit DUF2802 PF10975.8 CQR57074.1 - 0.021 14.9 0.7 0.16 12.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) KxDL PF10241.9 CQR57074.1 - 0.089 13.1 0.1 0.25 11.7 0.1 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein SidC_N PF18219.1 CQR57074.1 - 0.11 11.4 0.1 0.12 11.3 0.1 1.0 1 0 0 1 1 1 0 SidC N-terminal domain Exonuc_VII_L PF02601.15 CQR57075.1 - 5.6e-102 341.4 1.2 7e-102 341.1 1.2 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 CQR57075.1 - 5.8e-30 103.4 0.1 1.6e-29 101.9 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 CQR57075.1 - 1.4e-08 34.6 0.0 1e-07 31.9 0.0 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF1822 PF08852.11 CQR57075.1 - 0.057 12.4 1.9 0.079 12.0 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) Ecotin PF03974.13 CQR57075.1 - 0.079 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Ecotin THF_DHG_CYH_C PF02882.19 CQR57076.1 - 1e-72 242.7 2.3 1.6e-72 242.1 1.8 1.5 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 CQR57076.1 - 4.4e-41 139.8 0.3 6.6e-41 139.2 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATPgrasp_N PF18130.1 CQR57076.1 - 0.014 15.9 0.1 0.048 14.2 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp N-terminal domain NusB PF01029.18 CQR57077.1 - 1.3e-40 138.7 0.7 1.5e-40 138.5 0.7 1.0 1 0 0 1 1 1 1 NusB family DUF2273 PF10031.9 CQR57078.1 - 1.4e-15 57.0 5.8 2e-15 56.5 5.8 1.3 1 0 0 1 1 1 1 Small integral membrane protein (DUF2273) DUF3693 PF12472.8 CQR57078.1 - 0.027 14.1 0.4 5.8 6.7 0.1 2.9 3 0 0 3 3 3 0 Phage related protein Asp23 PF03780.13 CQR57079.1 - 3e-07 30.8 0.9 0.00011 22.5 0.1 2.2 1 1 1 2 2 2 2 Asp23 family, cell envelope-related function Asp23 PF03780.13 CQR57080.1 - 3.7e-38 130.3 8.5 4.4e-38 130.0 8.5 1.1 1 0 0 1 1 1 1 Asp23 family, cell envelope-related function CPSase_L_D2 PF02786.17 CQR57081.1 - 1.1e-80 270.1 0.4 1.7e-80 269.5 0.4 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 CQR57081.1 - 6.4e-48 161.9 0.0 4.1e-47 159.3 0.0 2.3 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 CQR57081.1 - 1.7e-43 147.1 0.0 4.7e-43 145.7 0.0 1.8 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 CQR57081.1 - 1.1e-10 41.4 0.0 2.5e-10 40.2 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 CQR57081.1 - 4.1e-07 29.7 0.3 9.6e-07 28.5 0.3 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 CQR57081.1 - 1.8e-06 27.7 0.1 3.1e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 CQR57081.1 - 2.2e-06 27.6 0.2 3.8e-06 26.8 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 CQR57081.1 - 0.00043 20.4 0.0 0.00094 19.3 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 CQR57081.1 - 0.083 12.1 0.1 0.46 9.7 0.0 1.9 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Biotin_lipoyl PF00364.22 CQR57082.1 - 5.3e-21 74.2 0.1 9e-21 73.5 0.1 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme GCV_H PF01597.19 CQR57082.1 - 0.006 16.5 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 CQR57082.1 - 0.012 15.4 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 Biotin-lipoyl like HlyD_3 PF13437.6 CQR57082.1 - 0.055 14.2 0.1 0.23 12.2 0.0 2.0 2 0 0 2 2 2 0 HlyD family secretion protein SpoIIIAH PF12685.7 CQR57083.1 - 1.3e-44 152.5 29.2 1.6e-34 119.6 17.8 2.1 1 1 1 2 2 2 2 SpoIIIAH-like protein AAA_23 PF13476.6 CQR57083.1 - 0.027 15.0 3.0 0.037 14.5 3.0 1.3 1 0 0 1 1 1 0 AAA domain SSF PF00474.17 CQR57083.1 - 0.25 10.2 0.4 0.6 8.9 0.1 1.7 2 0 0 2 2 2 0 Sodium:solute symporter family Spore_III_AF PF09581.10 CQR57085.1 - 7e-32 111.0 0.0 1.4e-31 110.1 0.0 1.4 1 1 0 1 1 1 1 Stage III sporulation protein AF (Spore_III_AF) Spore_III_AE PF09546.10 CQR57086.1 - 3.3e-110 368.3 43.1 4.8e-110 367.8 43.1 1.2 1 0 0 1 1 1 1 Stage III sporulation protein AE (spore_III_AE) SpoIIIAC PF06686.11 CQR57087.1 - 5.8e-34 116.0 23.1 1.8e-20 72.8 6.9 2.0 2 0 0 2 2 2 2 Stage III sporulation protein AC/AD protein family DUF3671 PF12420.8 CQR57087.1 - 1 9.5 7.5 2.4 8.2 7.5 1.8 1 1 0 1 1 1 0 Protein of unknown function CAAD PF14159.6 CQR57087.1 - 1.3 8.9 0.0 1.3 8.9 0.0 3.2 2 2 2 4 4 4 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase SpoIIIAC PF06686.11 CQR57088.1 - 1.9e-16 60.0 6.9 2.1e-16 59.8 6.9 1.0 1 0 0 1 1 1 1 Stage III sporulation protein AC/AD protein family MFS_Mycoplasma PF07672.13 CQR57088.1 - 0.044 13.1 3.9 0.045 13.0 3.9 1.1 1 0 0 1 1 1 0 Mycoplasma MFS transporter MRAP PF15183.6 CQR57088.1 - 0.71 9.9 4.0 0.83 9.6 3.5 1.4 1 1 0 1 1 1 0 Melanocortin-2 receptor accessory protein family Spore_III_AB PF09548.10 CQR57089.1 - 8.5e-52 175.7 0.4 9.4e-52 175.5 0.4 1.0 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) DUF5383 PF17355.2 CQR57089.1 - 0.034 14.5 0.2 0.049 14.0 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5383) NTPase_1 PF03266.15 CQR57090.1 - 0.037 13.9 0.1 0.28 11.1 0.1 2.1 1 1 0 1 1 1 0 NTPase TniB PF05621.11 CQR57090.1 - 0.045 13.2 0.0 0.22 10.9 0.0 1.9 1 1 0 1 1 1 0 Bacterial TniB protein DUF2619 PF10942.8 CQR57091.1 - 1.3e-29 102.1 2.5 1.6e-29 101.7 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2619) Chloroplast_duf PF14476.6 CQR57091.1 - 0.23 10.4 2.9 0.16 11.0 0.5 1.7 1 1 1 2 2 2 0 Petal formation-expressed YitT_membrane PF02588.15 CQR57092.1 - 2.3e-52 177.4 15.3 2.9e-52 177.0 15.3 1.1 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2179 PF10035.9 CQR57092.1 - 2.1e-19 69.0 1.3 3.6e-19 68.3 0.3 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2179) AA_kinase PF00696.28 CQR57093.1 - 1.5e-56 191.7 0.7 1.5e-56 191.7 0.7 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 CQR57093.1 - 1.1e-19 69.9 2.3 2.8e-14 52.6 0.7 2.8 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 CQR57093.1 - 1e-15 57.1 1.7 2.6e-09 36.7 0.2 2.9 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 CQR57093.1 - 2.3e-06 28.1 0.2 0.0047 17.5 0.0 2.8 2 1 0 2 2 2 2 ACT domain DUF166 PF02593.14 CQR57093.1 - 0.0054 16.3 0.0 0.019 14.5 0.0 1.8 2 1 0 2 2 2 1 Domain of unknown function Antimicrobial19 PF08225.11 CQR57093.1 - 0.039 13.5 0.3 6.6 6.5 0.1 2.6 2 0 0 2 2 2 0 Pseudin antimicrobial peptide CSTF2_hinge PF14327.6 CQR57093.1 - 0.18 12.3 0.1 0.51 10.8 0.1 1.7 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 EFP_N PF08207.12 CQR57094.1 - 1.8e-27 95.2 0.4 4.4e-27 93.9 0.4 1.7 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Elong-fact-P_C PF09285.11 CQR57094.1 - 2.5e-27 94.4 1.3 3.6e-27 93.9 0.3 1.8 2 0 0 2 2 2 1 Elongation factor P, C-terminal EFP PF01132.20 CQR57094.1 - 1.1e-22 79.7 1.8 1.8e-22 79.1 0.9 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain Peptidase_M24 PF00557.24 CQR57095.1 - 4.8e-69 232.2 0.1 6.6e-69 231.8 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 CQR57095.1 - 4.9e-29 101.7 0.1 7.5e-29 101.1 0.1 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain YqhR PF11085.8 CQR57096.1 - 1.8e-28 99.5 5.5 2.2e-28 99.3 5.5 1.0 1 0 0 1 1 1 1 Conserved membrane protein YqhR DUF1440 PF07274.12 CQR57096.1 - 0.00029 21.2 3.6 0.00062 20.1 3.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1440) DUF1385 PF07136.11 CQR57097.1 - 2.3e-78 262.6 0.1 2.8e-78 262.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1385) CrgA PF06781.12 CQR57097.1 - 0.034 14.2 0.1 0.17 12.0 0.0 2.2 2 0 0 2 2 2 0 Cell division protein CrgA DUF4870 PF09685.10 CQR57098.1 - 0.071 13.2 2.4 0.12 12.5 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4870) DUF2207 PF09972.9 CQR57098.1 - 0.21 10.3 1.5 0.22 10.3 1.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FtsH_ext PF06480.15 CQR57098.1 - 0.9 9.9 4.8 2.1 8.7 0.1 2.2 1 1 1 2 2 2 0 FtsH Extracellular Patatin PF01734.22 CQR57099.1 - 1.6e-29 103.5 0.5 2.5e-29 102.9 0.5 1.3 1 0 0 1 1 1 1 Patatin-like phospholipase GHL10 PF02638.15 CQR57100.1 - 4.8e-90 301.8 1.5 6.9e-90 301.3 1.5 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 Cu_amine_oxidN1 PF07833.11 CQR57100.1 - 1.7e-26 92.5 1.5 3.5e-26 91.5 0.4 2.1 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain Melibiase PF02065.18 CQR57100.1 - 0.00012 21.2 0.1 0.00068 18.7 0.0 1.9 2 0 0 2 2 2 1 Melibiase Glyco_hydro_18 PF00704.28 CQR57100.1 - 0.00014 21.7 2.2 0.00014 21.7 2.2 1.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 GHL6 PF14871.6 CQR57100.1 - 0.0004 20.5 0.1 0.013 15.7 0.0 2.8 2 1 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_66 PF13199.6 CQR57100.1 - 0.007 15.1 0.1 0.011 14.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 66 PBP5_C PF07943.13 CQR57100.1 - 0.056 13.7 0.4 0.16 12.2 0.1 1.8 2 0 0 2 2 2 0 Penicillin-binding protein 5, C-terminal domain Fe_dep_repress PF01325.19 CQR57101.1 - 7.4e-25 86.9 0.5 7.4e-25 86.9 0.5 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 CQR57101.1 - 1.1e-18 67.0 1.0 5.5e-18 64.8 0.3 2.1 2 1 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.22 CQR57101.1 - 3.9e-05 23.5 0.0 7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR57101.1 - 7.4e-05 22.6 0.0 0.00015 21.6 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR57101.1 - 0.00026 20.5 0.0 0.00041 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 CQR57101.1 - 0.007 16.1 0.3 0.23 11.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 CQR57101.1 - 0.011 15.6 0.1 0.027 14.4 0.1 1.8 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 CQR57101.1 - 0.021 14.6 0.0 0.061 13.1 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rrf2 PF02082.20 CQR57101.1 - 0.025 14.9 0.2 0.14 12.5 0.2 2.1 1 1 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 CQR57101.1 - 0.026 14.5 0.1 0.074 13.0 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_DeoR PF08220.12 CQR57101.1 - 0.065 13.0 0.1 0.28 10.9 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR57101.1 - 0.085 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Radical_SAM PF04055.21 CQR57102.1 - 1.6e-05 25.4 0.1 6.7e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily DsbD PF02683.15 CQR57103.1 - 2.8e-53 181.0 13.4 3.2e-53 180.8 13.4 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MerC PF03203.14 CQR57103.1 - 0.82 10.1 11.3 1.3 9.5 4.2 2.7 1 1 1 2 2 2 0 MerC mercury resistance protein RseC_MucC PF04246.12 CQR57103.1 - 7.6 6.5 10.6 15 5.5 4.1 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC ABC-3 PF00950.17 CQR57104.1 - 3.3e-61 207.1 36.7 4.1e-61 206.7 36.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 CQR57104.1 - 1.3e-07 30.9 36.0 1.8e-07 30.5 35.1 1.7 1 1 1 2 2 2 1 FecCD transport family DUF4407 PF14362.6 CQR57104.1 - 6.6 6.0 10.8 0.34 10.2 5.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) ABC_tran PF00005.27 CQR57105.1 - 2.7e-33 115.4 0.0 4.5e-33 114.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57105.1 - 9.5e-08 32.2 5.7 0.00061 19.7 0.4 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR57105.1 - 0.00033 20.2 0.4 0.13 11.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 CQR57105.1 - 0.0017 17.6 0.2 0.0043 16.3 0.2 1.7 1 1 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.6 CQR57105.1 - 0.0041 17.4 0.0 0.0092 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR57105.1 - 0.0044 17.5 0.5 0.008 16.7 0.2 1.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CQR57105.1 - 0.0075 16.5 0.2 0.28 11.5 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 CQR57105.1 - 0.0076 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase MobB PF03205.14 CQR57105.1 - 0.012 15.5 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 CQR57105.1 - 0.012 15.4 0.2 0.024 14.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR57105.1 - 0.017 14.8 0.1 0.037 13.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 CQR57105.1 - 0.037 13.1 0.0 0.07 12.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 CQR57105.1 - 0.038 13.7 1.0 0.049 13.4 0.3 1.4 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 CQR57105.1 - 0.04 13.3 0.1 0.078 12.3 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 CQR57105.1 - 0.042 13.4 0.1 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 CQR57105.1 - 0.12 12.3 1.2 0.25 11.2 0.2 1.9 2 1 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 CQR57105.1 - 0.16 12.3 0.6 0.44 10.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 CQR57105.1 - 0.16 12.4 1.2 1.8 9.0 1.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 CQR57105.1 - 0.17 11.4 0.4 0.3 10.7 0.4 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ZnuA PF01297.17 CQR57106.1 - 2.6e-77 259.7 0.2 2.9e-77 259.5 0.2 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ERp29 PF07749.12 CQR57106.1 - 0.1 13.5 0.2 25 5.8 0.0 2.4 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain tRNA-synt_1g PF09334.11 CQR57107.1 - 8.4e-115 383.6 0.3 1.5e-113 379.5 0.3 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 CQR57107.1 - 4.4e-31 107.8 1.5 4.3e-15 55.0 0.0 4.0 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA_bind PF01588.20 CQR57107.1 - 4.7e-29 100.4 0.1 8.7e-29 99.5 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1e PF01406.19 CQR57107.1 - 2.4e-15 56.7 0.0 1.3e-09 37.8 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 CQR57107.1 - 2.1e-07 31.0 0.0 3.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 CQR57107.1 - 0.00012 21.1 0.0 0.0062 15.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 CQR57107.1 - 0.079 11.9 0.0 0.36 9.7 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (R) YidD PF01809.18 CQR57108.1 - 1.5e-30 104.8 0.2 1.7e-30 104.6 0.2 1.0 1 0 0 1 1 1 1 Putative membrane protein insertion efficiency factor FUR PF01475.19 CQR57109.1 - 6.5e-26 90.8 0.5 8.8e-26 90.4 0.3 1.3 1 1 0 1 1 1 1 Ferric uptake regulator family Cu_amine_oxidN1 PF07833.11 CQR57110.1 - 1.6e-16 60.5 7.9 8.1e-13 48.7 1.1 2.8 1 1 1 2 2 2 2 Copper amine oxidase N-terminal domain Cadherin_5 PF17892.1 CQR57110.1 - 0.041 13.9 3.0 9.8 6.2 0.0 4.5 3 2 2 5 5 5 0 Cadherin-like domain DUF5011 PF16403.5 CQR57110.1 - 0.44 10.7 3.9 0.52 10.5 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) Sugar_tr PF00083.24 CQR57111.1 - 9e-123 410.5 27.3 1.1e-122 410.2 27.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 CQR57111.1 - 2.1e-40 138.8 45.4 4e-29 101.6 21.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR57111.1 - 2e-05 23.6 15.4 0.0025 16.7 3.5 2.2 2 0 0 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 CQR57111.1 - 0.00032 19.4 37.9 0.00081 18.1 5.2 3.9 2 2 2 4 4 4 3 MFS/sugar transport protein MFS_3 PF05977.13 CQR57111.1 - 0.023 13.1 26.1 0.034 12.5 8.9 2.1 2 0 0 2 2 2 0 Transmembrane secretion effector Response_reg PF00072.24 CQR57112.1 - 8.3e-24 83.9 0.0 1.9e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR57112.1 - 4e-23 81.0 0.0 1.9e-11 43.7 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR57112.1 - 2.9e-20 72.3 0.0 7.1e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR57112.1 - 1.4e-08 35.0 0.0 3.9e-08 33.5 0.0 1.8 1 0 0 1 1 1 1 GGDEF-like domain His_kinase PF06580.13 CQR57113.1 - 1.5e-26 92.5 1.5 4.5e-26 91.0 1.5 1.8 1 0 0 1 1 1 1 Histidine kinase HAMP PF00672.25 CQR57113.1 - 1.1e-09 38.6 0.0 4.9e-09 36.4 0.0 2.2 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR57113.1 - 3e-09 37.4 0.3 8.7e-09 35.9 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR57113.1 - 0.0033 17.3 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VacA2 PF03077.14 CQR57113.1 - 0.14 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Putative vacuolating cytotoxin NFACT-R_2 PF18297.1 CQR57113.1 - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 NFACT protein RNA binding domain Peripla_BP_4 PF13407.6 CQR57114.1 - 7.6e-55 186.3 0.0 8.9e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR57114.1 - 1.7e-15 57.2 0.0 2.2e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR57114.1 - 2.8e-07 31.0 0.0 1.5e-06 28.7 0.0 2.0 1 1 1 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_6 PF13458.6 CQR57114.1 - 9.9e-07 28.7 0.0 3.7e-06 26.8 0.0 1.7 1 1 1 2 2 2 2 Periplasmic binding protein ABC_sub_bind PF04392.12 CQR57114.1 - 0.062 12.5 0.0 0.15 11.3 0.0 1.5 2 0 0 2 2 2 0 ABC transporter substrate binding protein DUF3834 PF12916.7 CQR57114.1 - 0.075 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) Response_reg PF00072.24 CQR57115.1 - 7.3e-25 87.3 0.0 1.3e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR57115.1 - 2.7e-19 68.8 0.4 1.4e-09 37.8 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR57115.1 - 1.1e-18 67.3 0.2 2.4e-18 66.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Flavodoxin_3 PF12641.7 CQR57115.1 - 0.17 11.5 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain His_kinase PF06580.13 CQR57116.1 - 1e-25 89.8 0.9 2.4e-25 88.6 0.9 1.7 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR57116.1 - 1.5e-22 80.6 2.1 1.5e-22 80.6 2.1 1.7 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR57116.1 - 8.2e-10 38.9 0.1 1.7e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR57116.1 - 2e-06 28.2 0.1 6.6e-06 26.6 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1189 PF06691.11 CQR57116.1 - 0.0011 18.6 2.2 0.011 15.4 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1189) F_actin_cap_B PF01115.17 CQR57116.1 - 0.051 13.2 0.5 0.63 9.6 0.0 2.2 2 0 0 2 2 2 0 F-actin capping protein, beta subunit HATPase_c_3 PF13589.6 CQR57116.1 - 0.15 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BPD_transp_1 PF00528.22 CQR57117.1 - 4.9e-21 75.3 16.9 4.9e-21 75.3 16.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1286 PF06939.11 CQR57117.1 - 2.2 8.6 8.8 0.83 9.9 0.8 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1286) BPD_transp_1 PF00528.22 CQR57118.1 - 6.2e-18 65.2 25.3 6.2e-18 65.2 25.3 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Stevor PF17410.2 CQR57118.1 - 0.037 13.6 3.5 0.066 12.8 3.5 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame SBP_bac_1 PF01547.25 CQR57119.1 - 8.2e-25 88.4 13.0 1.3e-24 87.8 13.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Cdh1_DBD_1 PF18196.1 CQR57119.1 - 0.052 13.9 0.5 0.87 9.9 0.1 2.5 2 1 1 3 3 3 0 Chromodomain helicase DNA-binding domain 1 Radical_SAM PF04055.21 CQR57120.1 - 2.4e-29 102.9 0.0 3.6e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR57120.1 - 6.7e-21 75.0 0.0 9.1e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR57120.1 - 1.1e-09 38.5 0.0 1.6e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PFL-like PF02901.15 CQR57121.1 - 5.3e-210 699.4 0.3 6.7e-210 699.0 0.3 1.0 1 0 0 1 1 1 1 Pyruvate formate lyase-like Gly_radical PF01228.21 CQR57121.1 - 5.4e-45 152.3 0.0 1.5e-44 150.8 0.0 1.8 1 0 0 1 1 1 1 Glycine radical DUF3029 PF11230.8 CQR57121.1 - 0.00017 20.1 0.1 0.0029 16.1 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF3029) Fe-ADH PF00465.19 CQR57122.1 - 6.8e-115 383.8 0.4 3.6e-114 381.4 0.1 2.2 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Aldedh PF00171.22 CQR57122.1 - 1.3e-30 106.4 10.9 2e-29 102.4 10.9 2.2 1 1 0 1 1 1 1 Aldehyde dehydrogenase family Fe-ADH_2 PF13685.6 CQR57122.1 - 9.1e-16 58.3 3.0 3.1e-07 30.4 0.3 3.3 3 0 0 3 3 3 2 Iron-containing alcohol dehydrogenase MEA1 PF06910.11 CQR57122.1 - 0.13 12.8 0.5 0.26 11.9 0.5 1.4 1 0 0 1 1 1 0 Male enhanced antigen 1 (MEA1) GxGYxYP_N PF16216.5 CQR57122.1 - 0.22 11.7 1.4 1.1 9.4 0.4 2.5 2 1 0 2 2 2 0 GxGYxY sequence motif in domain of unknown function N-terminal BPD_transp_1 PF00528.22 CQR57124.1 - 2.4e-15 56.8 14.2 2.4e-15 56.8 14.2 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57125.1 - 6.3e-15 55.4 13.4 6.3e-15 55.4 13.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF334 PF03904.13 CQR57125.1 - 0.05 13.1 5.8 0.78 9.2 0.6 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF334) DUF2207 PF09972.9 CQR57125.1 - 0.33 9.7 1.8 0.67 8.6 1.8 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Response_reg PF00072.24 CQR57126.1 - 6.2e-24 84.3 0.0 1.3e-23 83.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57126.1 - 7.9e-20 70.9 0.1 2.9e-19 69.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57126.1 - 1.6e-16 59.9 0.0 2.5e-09 37.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_3 PF01381.22 CQR57126.1 - 0.0044 17.0 0.0 0.56 10.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 CQR57126.1 - 0.019 14.7 0.0 0.22 11.4 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain His_kinase PF06580.13 CQR57127.1 - 2.1e-21 76.0 2.8 2.1e-21 76.0 2.8 2.1 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR57127.1 - 8e-12 45.5 1.5 8e-12 45.5 1.5 1.6 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR57127.1 - 0.00032 21.2 0.1 0.0009 19.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abhydrolase_3 PF07859.13 CQR57128.1 - 7e-14 52.2 0.0 1.1e-13 51.5 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR57128.1 - 1.7e-13 50.6 0.0 4e-08 33.0 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 CQR57128.1 - 0.0016 18.0 0.0 1.4 8.4 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 CQR57128.1 - 0.016 15.0 0.0 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase COesterase PF00135.28 CQR57128.1 - 0.017 14.0 0.0 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 Carboxylesterase family Hydrolase_4 PF12146.8 CQR57128.1 - 0.023 14.0 0.1 0.74 9.0 0.0 2.4 2 1 0 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR57128.1 - 0.024 14.3 0.0 0.46 10.1 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold FSH1 PF03959.13 CQR57128.1 - 0.068 12.8 0.0 0.11 12.1 0.0 1.4 1 1 0 1 1 1 0 Serine hydrolase (FSH1) AXE1 PF05448.12 CQR57128.1 - 0.16 10.6 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) BPD_transp_2 PF02653.16 CQR57128.1 - 0.19 10.9 0.0 0.28 10.3 0.0 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component Abhydrolase_6 PF12697.7 CQR57128.1 - 2.3 8.8 10.4 10 6.7 10.3 1.9 1 1 0 1 1 1 0 Alpha/beta hydrolase family HAD_2 PF13419.6 CQR57129.1 - 4.4e-30 105.1 0.0 5.1e-30 104.9 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR57129.1 - 8.3e-20 72.0 0.1 1.4e-19 71.3 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR57129.1 - 1.2e-05 25.2 0.1 2.3e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR57129.1 - 2.2e-05 24.9 0.1 2.7e-05 24.7 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 CQR57129.1 - 0.044 13.9 0.0 0.33 11.1 0.0 2.5 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_hydro_65m PF03632.15 CQR57130.1 - 4.7e-98 328.6 0.0 6.3e-98 328.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR57130.1 - 3.2e-37 128.3 0.0 4.5e-37 127.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR57130.1 - 1.7e-06 27.9 0.0 4.2e-06 26.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain hemP PF10636.9 CQR57130.1 - 0.029 14.2 0.3 0.099 12.5 0.1 2.1 2 0 0 2 2 2 0 Hemin uptake protein hemP Glyco_hydro_65m PF03632.15 CQR57131.1 - 3.7e-118 394.7 0.0 4.9e-118 394.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR57131.1 - 2.2e-54 184.5 0.0 4.2e-54 183.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR57131.1 - 1.6e-10 40.7 0.0 4.1e-10 39.4 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain HTH_Crp_2 PF13545.6 CQR57132.1 - 7.7e-17 61.0 0.0 1.8e-16 59.8 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 CQR57132.1 - 5e-15 55.3 0.0 8.5e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Crp PF00325.20 CQR57132.1 - 1.5e-08 34.1 0.0 2.8e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family TrmB PF01978.19 CQR57132.1 - 0.0039 17.0 0.1 0.0078 16.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 CQR57132.1 - 0.029 13.9 0.1 0.074 12.6 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_46 PF15977.5 CQR57132.1 - 0.089 12.8 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding HTH_26 PF13443.6 CQR57132.1 - 0.11 13.0 0.1 0.31 11.5 0.1 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Fe_dep_repress PF01325.19 CQR57132.1 - 0.12 12.6 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HydF_tetramer PF18133.1 CQR57132.1 - 0.17 11.7 0.2 0.17 11.7 0.2 1.6 2 0 0 2 2 2 0 Hydrogen maturase F tetramerization domain Form_Nir_trans PF01226.17 CQR57133.1 - 1.2e-74 250.6 21.9 1.5e-74 250.3 21.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter PKHD_C PF18331.1 CQR57133.1 - 0.11 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 PKHD-type hydroxylase C-terminal domain Rieske_2 PF13806.6 CQR57134.1 - 7.1e-16 58.0 0.0 8.8e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.26 CQR57134.1 - 8.2e-05 22.5 0.0 9.7e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Pyr_redox_2 PF07992.14 CQR57135.1 - 9.9e-57 192.4 3.4 2.8e-56 190.9 3.3 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NIR_SIR PF01077.22 CQR57135.1 - 1e-29 103.1 0.1 2.3e-29 102.0 0.1 1.5 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer2_BFD PF04324.15 CQR57135.1 - 5.6e-27 93.8 16.9 2.2e-14 53.5 5.6 3.2 3 0 0 3 3 2 2 BFD-like [2Fe-2S] binding domain Rubredoxin_C PF18267.1 CQR57135.1 - 1.3e-20 73.1 0.2 3e-20 71.9 0.2 1.7 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox PF00070.27 CQR57135.1 - 7.7e-19 68.0 5.4 2.4e-17 63.3 0.4 3.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NIR_SIR_ferr PF03460.17 CQR57135.1 - 4.1e-12 45.8 0.0 1e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Pyr_redox_3 PF13738.6 CQR57135.1 - 8.6e-11 41.6 0.0 1.5e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR57135.1 - 9.8e-05 21.2 1.4 0.24 10.1 0.0 3.4 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.6 CQR57135.1 - 0.00019 21.5 7.8 2.7 8.0 0.1 4.2 3 1 1 4 4 4 3 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 CQR57135.1 - 0.0049 16.2 3.5 0.019 14.3 0.6 2.7 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 CQR57135.1 - 0.0054 15.9 2.9 0.21 10.6 0.5 3.0 2 1 1 3 3 3 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 CQR57135.1 - 0.006 15.5 0.0 0.006 15.5 0.0 1.8 2 0 0 2 2 2 1 Tryptophan halogenase 3HCDH_N PF02737.18 CQR57135.1 - 0.009 15.9 0.7 0.009 15.9 0.7 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 CQR57135.1 - 0.01 16.3 0.3 0.52 10.8 0.1 2.7 2 0 0 2 2 2 0 Putative NAD(P)-binding DpaA_N PF16924.5 CQR57135.1 - 0.1 12.7 0.4 15 5.8 0.1 3.1 3 0 0 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain FAD_binding_2 PF00890.24 CQR57135.1 - 0.13 11.4 4.2 3.8 6.5 0.0 2.5 1 1 0 2 2 2 0 FAD binding domain DUF3394 PF11874.8 CQR57136.1 - 0.12 12.0 0.0 0.8 9.4 0.0 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF3394) Hemerythrin PF01814.23 CQR57137.1 - 2.7e-21 76.6 9.8 8.9e-21 74.9 9.0 1.9 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 CQR57137.1 - 9.3e-18 63.6 0.6 1.8e-17 62.8 0.2 1.7 2 0 0 2 2 2 1 Domain of Unknown function (DUF542) DDE_Tnp_ISL3 PF01610.17 CQR57137.1 - 0.068 12.9 0.1 0.087 12.5 0.1 1.2 1 0 0 1 1 1 0 Transposase HTH_3 PF01381.22 CQR57138.1 - 7.1e-17 61.2 0.0 8.1e-17 61.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR57138.1 - 2.4e-09 37.1 0.0 2.7e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR57138.1 - 1.5e-07 31.6 0.0 1.7e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR57138.1 - 2e-05 24.3 0.0 2.7e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR57138.1 - 0.00089 19.6 0.1 0.0011 19.3 0.1 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain YdaS_antitoxin PF15943.5 CQR57138.1 - 0.00098 18.9 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Crp_2 PF13545.6 CQR57138.1 - 0.0022 17.9 0.0 0.0031 17.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.13 CQR57138.1 - 0.007 16.4 0.0 0.0078 16.3 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 CQR57138.1 - 0.0078 16.0 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 CQR57138.1 - 0.013 15.6 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 CQR57138.1 - 0.014 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR57138.1 - 0.02 14.8 0.1 0.03 14.3 0.1 1.2 1 0 0 1 1 1 0 HTH domain Crp PF00325.20 CQR57138.1 - 0.029 14.0 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_38 PF13936.6 CQR57138.1 - 0.037 13.8 0.1 0.16 11.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 CQR57138.1 - 0.056 13.0 0.1 0.094 12.3 0.0 1.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 CQR57138.1 - 0.065 13.1 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 CQR57138.1 - 0.15 12.2 0.1 0.22 11.7 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3278 PF11683.8 CQR57139.1 - 0.17 11.9 2.9 0.19 11.9 0.3 2.2 2 2 0 2 2 2 0 Protein of unknown function (DUF3278) FeoB_associated PF12669.7 CQR57139.1 - 0.44 11.0 3.0 7.4 7.1 0.0 3.0 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein TctB PF07331.11 CQR57139.1 - 0.95 9.7 7.6 0.11 12.8 2.0 2.0 1 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family TPPK_C PF12555.8 CQR57139.1 - 8.9 6.4 9.9 0.18 11.8 2.0 2.3 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal HxlR PF01638.17 CQR57141.1 - 2.3e-31 107.5 0.1 2.7e-31 107.3 0.1 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR57141.1 - 0.056 13.4 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GFO_IDH_MocA PF01408.22 CQR57143.1 - 9.9e-23 81.2 0.0 1.5e-22 80.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 CQR57143.1 - 0.061 14.0 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 CQR57143.1 - 0.09 13.2 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Pr_beta_C PF12465.8 CQR57143.1 - 0.17 11.3 0.2 0.36 10.3 0.2 1.5 1 0 0 1 1 1 0 Proteasome beta subunits C terminal SNARE_assoc PF09335.11 CQR57144.1 - 8.9e-21 74.6 10.7 8.9e-21 74.6 10.7 2.3 1 1 1 2 2 2 2 SNARE associated Golgi protein Presenilin PF01080.17 CQR57144.1 - 0.13 11.0 4.4 0.2 10.4 4.4 1.2 1 0 0 1 1 1 0 Presenilin PMSR PF01625.21 CQR57145.1 - 2e-59 200.2 0.2 2.9e-59 199.6 0.2 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 CQR57145.1 - 7.7e-49 164.8 0.0 2.2e-48 163.3 0.0 1.8 2 0 0 2 2 2 1 SelR domain DUF4349 PF14257.6 CQR57146.1 - 1.9e-56 190.9 0.7 3e-56 190.2 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) Peptidase_S49_N PF08496.10 CQR57146.1 - 0.011 15.9 0.4 2.4 8.2 0.3 2.4 2 0 0 2 2 2 0 Peptidase family S49 N-terminal TMEM154 PF15102.6 CQR57146.1 - 0.15 12.0 0.5 0.33 10.9 0.0 1.9 2 0 0 2 2 2 0 TMEM154 protein family Ctr PF04145.15 CQR57146.1 - 0.58 10.8 2.0 0.98 10.0 2.0 1.7 1 1 0 1 1 1 0 Ctr copper transporter family DUF1540 PF07561.11 CQR57147.1 - 9.1e-14 51.5 7.0 1e-13 51.3 7.0 1.0 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1540) Meth_synt_2 PF01717.18 CQR57148.1 - 6.8e-157 521.8 0.1 1.5e-150 500.9 0.0 3.4 3 1 0 3 3 3 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 CQR57148.1 - 4.5e-125 417.3 0.0 2.1e-115 385.5 0.0 2.4 3 0 0 3 3 3 2 Cobalamin-independent synthase, N-terminal domain Put_DNA-bind_N PF06971.13 CQR57148.1 - 0.014 15.4 0.0 0.059 13.4 0.0 2.1 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus DDE_3 PF13358.6 CQR57149.1 - 3.9e-36 124.0 0.0 4.8e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.6 CQR57150.1 - 2.7e-19 68.6 0.0 5.2e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Terminase_5 PF06056.12 CQR57150.1 - 1.1e-08 34.8 0.0 6.7e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_32 PF13565.6 CQR57150.1 - 1.3e-08 35.3 0.0 2.3e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 CQR57150.1 - 3.2e-07 30.3 0.0 7.6e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 CQR57150.1 - 6.1e-07 29.1 0.2 1.7e-06 27.7 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 CQR57150.1 - 0.00014 21.9 0.0 0.00047 20.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 CQR57150.1 - 0.00057 20.3 0.6 0.0017 18.8 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 CQR57150.1 - 0.013 15.1 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR57150.1 - 0.019 14.6 0.1 0.061 13.0 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 CQR57150.1 - 0.025 14.4 0.5 0.093 12.5 0.1 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain DUF1670 PF07900.11 CQR57150.1 - 0.082 12.3 0.1 0.17 11.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1670) BacA PF02673.18 CQR57151.1 - 7e-82 275.0 12.7 8.2e-82 274.8 12.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA SNARE_assoc PF09335.11 CQR57152.1 - 1.2e-22 80.6 5.5 1.2e-22 80.6 5.5 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.11 CQR57152.1 - 0.0028 18.3 0.3 0.0073 16.9 0.2 1.8 1 1 0 1 1 1 1 Putative small multi-drug export protein ExoD PF06055.12 CQR57152.1 - 1.1 8.6 8.2 8.7 5.7 8.2 2.2 1 1 0 1 1 1 0 Exopolysaccharide synthesis, ExoD RseC_MucC PF04246.12 CQR57152.1 - 6.4 6.7 5.7 4.2 7.3 0.6 2.4 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC FtsX PF02687.21 CQR57153.1 - 4e-08 33.6 10.2 4e-08 33.6 10.2 5.1 4 2 1 5 5 5 2 FtsX-like permease family Prominin PF05478.11 CQR57153.1 - 0.97 7.3 2.3 2 6.3 2.3 1.4 1 0 0 1 1 1 0 Prominin ABC_tran PF00005.27 CQR57154.1 - 1.1e-34 119.8 0.0 1.5e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57154.1 - 1.3e-05 25.2 0.1 0.13 12.0 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR57154.1 - 0.00037 20.4 0.0 0.00064 19.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 CQR57154.1 - 0.0004 20.2 0.1 0.0055 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 CQR57154.1 - 0.00074 19.0 0.1 1.1 8.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR57154.1 - 0.00098 18.8 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR57154.1 - 0.0023 18.3 0.0 0.0037 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR57154.1 - 0.0041 17.7 0.1 0.0065 17.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 CQR57154.1 - 0.0046 16.0 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 CQR57154.1 - 0.008 16.5 0.3 0.055 13.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 CQR57154.1 - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Chlorosome_CsmC PF11098.8 CQR57154.1 - 0.02 14.9 0.1 0.072 13.1 0.0 1.7 1 1 1 2 2 2 0 Chlorosome envelope protein C ATPase_2 PF01637.18 CQR57154.1 - 0.025 14.5 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 CQR57154.1 - 0.026 14.1 0.1 0.85 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR57154.1 - 0.047 12.9 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 CQR57154.1 - 0.053 14.1 0.0 0.22 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 CQR57154.1 - 0.058 13.6 0.0 0.86 9.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 CQR57154.1 - 0.087 12.9 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 CQR57154.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 CQR57154.1 - 0.12 12.6 0.2 0.29 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 CQR57154.1 - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 CQR57154.1 - 0.14 11.5 0.2 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.25 CQR57154.1 - 0.15 11.7 0.2 0.21 11.2 0.2 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.6 CQR57154.1 - 0.19 12.0 0.5 1.3 9.4 0.1 2.1 2 1 1 3 3 3 0 AAA domain Oxidored_FMN PF00724.20 CQR57155.1 - 1.5e-73 248.0 0.0 1.7e-73 247.8 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 CQR57155.1 - 0.0011 18.1 0.1 0.002 17.3 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 CQR57155.1 - 0.0096 15.4 0.3 0.02 14.3 0.3 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase MarR_2 PF12802.7 CQR57156.1 - 4e-09 36.2 0.0 8.8e-09 35.1 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR57156.1 - 2.1e-07 30.8 0.0 3.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR57156.1 - 0.0094 16.4 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 CQR57156.1 - 0.014 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 CQR57156.1 - 0.014 15.1 0.0 0.037 13.8 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.20 CQR57156.1 - 0.025 14.4 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 CQR57156.1 - 0.026 14.5 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 CQR57156.1 - 0.033 14.3 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 CQR57156.1 - 0.035 13.6 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 CQR57156.1 - 0.056 13.5 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix Phage_AlpA PF05930.12 CQR57156.1 - 0.09 12.6 0.1 0.21 11.5 0.1 1.6 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_34 PF13601.6 CQR57156.1 - 0.092 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 CQR57156.1 - 0.1 12.6 0.1 0.26 11.3 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family PQ-loop PF04193.14 CQR57157.1 - 1.2e-06 28.2 0.9 1.2e-06 28.2 0.9 1.8 1 1 1 2 2 2 1 PQ loop repeat MtN3_slv PF03083.16 CQR57157.1 - 0.019 15.0 1.6 0.025 14.6 1.6 1.4 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange HATPase_c PF02518.26 CQR57158.1 - 8.9e-16 58.4 0.0 1.3e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR57158.1 - 0.044 13.7 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Trans_reg_C PF00486.28 CQR57159.1 - 2.3e-23 82.0 0.1 4e-23 81.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR57159.1 - 2.6e-22 79.1 0.0 4.8e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PspB PF06667.12 CQR57159.1 - 0.14 12.2 0.1 0.26 11.4 0.1 1.4 1 0 0 1 1 1 0 Phage shock protein B Methyltransf_11 PF08241.12 CQR57160.1 - 1.6e-20 73.6 0.1 2.4e-20 72.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR57160.1 - 4.2e-19 69.0 0.1 7.9e-19 68.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR57160.1 - 1.3e-13 51.0 0.0 1.8e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57160.1 - 3.2e-13 49.8 0.0 4.3e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 CQR57160.1 - 3.5e-10 39.6 0.0 5.8e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 CQR57160.1 - 6.2e-09 36.5 0.0 1e-08 35.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 CQR57160.1 - 1.5e-08 33.9 0.0 2.2e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 CQR57160.1 - 1e-06 28.3 0.0 1.4e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 CQR57160.1 - 5.9e-05 22.7 0.0 8.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 CQR57160.1 - 0.0019 17.8 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 CQR57160.1 - 0.0068 15.8 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 CQR57160.1 - 0.0093 16.1 0.0 0.019 15.1 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 CQR57160.1 - 0.033 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 CQR57160.1 - 0.037 14.0 0.0 0.055 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TPMT PF05724.11 CQR57160.1 - 0.037 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_29 PF03141.16 CQR57160.1 - 0.055 12.0 0.0 0.08 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase TehB PF03848.14 CQR57160.1 - 0.2 11.1 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Pox_MCEL PF03291.16 CQR57160.1 - 0.24 10.5 0.0 8.8 5.3 0.0 2.1 2 0 0 2 2 2 0 mRNA capping enzyme DUF1196 PF06709.11 CQR57162.1 - 0.0021 18.2 21.7 59 3.9 0.0 10.2 2 2 10 12 12 12 1 Protein of unknown function (DUF1196) zf-C2HC PF01530.18 CQR57162.1 - 0.056 13.7 19.3 29 5.0 0.1 8.5 9 0 0 9 9 9 0 Zinc finger, C2HC type lci PF12197.8 CQR57162.1 - 0.67 9.8 15.0 40 4.1 0.0 7.2 7 5 1 8 8 8 0 Bacillus cereus group antimicrobial protein MerR_1 PF13411.6 CQR57163.1 - 9.1e-21 73.7 0.3 1.6e-20 73.0 0.3 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR57163.1 - 2.9e-13 49.3 1.7 6.3e-13 48.3 1.7 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR57163.1 - 8.4e-12 45.5 0.3 1.3e-11 44.9 0.3 1.3 1 0 0 1 1 1 1 MerR, DNA binding Phytochelatin PF05023.14 CQR57163.1 - 0.024 13.9 0.0 0.028 13.6 0.0 1.1 1 0 0 1 1 1 0 Phytochelatin synthase HTH_3 PF01381.22 CQR57163.1 - 0.095 12.8 0.4 5 7.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix AbiEi_4 PF13338.6 CQR57163.1 - 0.11 12.7 0.2 2.5 8.3 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin NAD_binding_2 PF03446.15 CQR57164.1 - 1.5e-32 113.0 0.0 2.1e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 CQR57164.1 - 3.3e-10 40.2 0.1 7e-10 39.2 0.1 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 CQR57164.1 - 0.0019 18.7 0.0 0.0058 17.2 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 CQR57164.1 - 0.0039 17.2 0.0 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 CQR57164.1 - 0.1 12.3 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF3717 PF12512.8 CQR57164.1 - 0.12 12.2 0.7 4 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3717) 3HCDH_N PF02737.18 CQR57164.1 - 0.18 11.6 0.1 0.34 10.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIM24 PF01987.17 CQR57165.1 - 2.5e-67 226.6 0.9 2.9e-67 226.4 0.9 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 YitT_membrane PF02588.15 CQR57166.1 - 4.2e-39 134.0 17.7 5e-39 133.8 17.7 1.0 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF4491 PF14898.6 CQR57166.1 - 1.1 9.8 6.5 1.4 9.4 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4491) cNMP_binding PF00027.29 CQR57167.1 - 3.3e-13 49.5 0.0 7.1e-13 48.4 0.0 1.6 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR57167.1 - 1.1e-06 28.5 0.1 1.9e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 CQR57167.1 - 0.0015 18.1 0.2 0.0027 17.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.16 CQR57167.1 - 0.0029 17.1 0.1 0.0048 16.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 CQR57167.1 - 0.026 14.6 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.6 CQR57167.1 - 0.04 13.7 0.0 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain APS_kinase PF01583.20 CQR57168.1 - 4.8e-60 202.0 0.0 5.9e-60 201.7 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 CQR57168.1 - 0.00014 21.3 0.0 0.00018 20.8 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 CQR57168.1 - 0.00041 20.5 0.1 0.0012 19.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 CQR57168.1 - 0.00053 20.5 0.0 0.00059 20.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 CQR57168.1 - 0.0017 18.9 0.0 0.0029 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR57168.1 - 0.0034 17.8 0.1 0.0035 17.7 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain ParA PF10609.9 CQR57168.1 - 0.0078 15.7 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase NTPase_1 PF03266.15 CQR57168.1 - 0.013 15.4 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 NTPase MeaB PF03308.16 CQR57168.1 - 0.021 13.8 0.1 0.029 13.4 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 CQR57168.1 - 0.031 14.6 0.1 0.059 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 CQR57168.1 - 0.033 13.9 0.0 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase SKI PF01202.22 CQR57168.1 - 0.037 14.1 0.0 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 Shikimate kinase AAA_25 PF13481.6 CQR57168.1 - 0.049 13.2 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR57168.1 - 0.068 12.9 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR57168.1 - 0.082 12.6 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 CQR57168.1 - 0.089 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MipZ PF09140.11 CQR57168.1 - 0.095 12.0 0.1 0.16 11.3 0.1 1.3 1 1 0 1 1 1 0 ATPase MipZ KTI12 PF08433.10 CQR57168.1 - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 1 0 1 1 1 0 Chromatin associated protein KTI12 Cytidylate_kin PF02224.18 CQR57168.1 - 0.15 11.7 0.0 1.9 8.2 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase AAA_17 PF13207.6 CQR57168.1 - 0.18 12.2 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 CQR57169.1 - 0.00015 22.2 0.0 0.00046 20.6 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 CQR57170.1 - 5.2e-16 59.5 0.0 8.1e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 CQR57170.1 - 1.6e-07 31.3 0.7 3.8e-07 30.1 0.7 1.6 1 0 0 1 1 1 1 HemN C-terminal domain Sulfatase PF00884.23 CQR57171.1 - 9.2e-10 38.4 0.1 1.4e-09 37.8 0.1 1.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 CQR57171.1 - 0.0015 18.2 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase ATPgrasp_ST PF14397.6 CQR57172.1 - 0.0053 16.0 0.0 0.014 14.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 CQR57172.1 - 0.015 15.3 0.0 6.5 6.8 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain LRR_6 PF13516.6 CQR57173.1 - 2.9e-06 26.9 1.7 0.71 10.1 0.2 3.9 4 0 0 4 4 4 3 Leucine Rich repeat LRR_4 PF12799.7 CQR57173.1 - 0.0004 20.7 6.3 14 6.3 0.1 5.2 3 1 3 6 6 6 4 Leucine Rich repeats (2 copies) PTS_EIIA_2 PF00359.22 CQR57174.1 - 1.4e-35 122.4 0.1 2e-35 121.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS_IIB PF02302.17 CQR57174.1 - 5.6e-19 68.6 0.6 1.3e-18 67.4 0.6 1.7 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PBP_like_2 PF12849.7 CQR57174.1 - 0.088 12.5 0.8 0.18 11.5 0.8 1.5 1 0 0 1 1 1 0 PBP superfamily domain PfkB PF00294.24 CQR57175.1 - 2.9e-49 168.0 0.1 3.5e-49 167.7 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR57175.1 - 1.2e-08 34.6 0.0 3.4e-08 33.2 0.0 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 CQR57175.1 - 0.00013 21.6 0.1 0.00017 21.1 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase DeoRC PF00455.22 CQR57176.1 - 5.7e-56 188.9 0.6 7.5e-56 188.5 0.6 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 CQR57176.1 - 3.3e-19 68.4 0.9 6.7e-19 67.4 0.9 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR57176.1 - 1.7e-09 37.5 0.3 3.3e-09 36.6 0.3 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 CQR57176.1 - 1.3e-06 27.9 1.4 9.7e-06 25.1 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 CQR57176.1 - 2.5e-06 27.3 0.3 5.8e-06 26.1 0.2 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR57176.1 - 4.2e-06 26.7 0.8 3.6e-05 23.7 0.5 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 CQR57176.1 - 7.9e-06 25.6 0.4 1.8e-05 24.4 0.4 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 CQR57176.1 - 1.1e-05 25.0 0.8 2.8e-05 23.7 0.8 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 CQR57176.1 - 1.1e-05 25.1 0.6 3e-05 23.8 0.2 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR57176.1 - 0.0001 22.2 1.4 0.0032 17.4 0.4 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 CQR57176.1 - 0.00019 21.1 2.5 0.00027 20.6 0.2 2.3 2 1 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.7 CQR57176.1 - 0.00032 20.5 0.5 0.00082 19.2 0.5 1.6 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 CQR57176.1 - 0.00046 20.1 0.0 0.0012 18.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 CQR57176.1 - 0.0005 20.2 0.0 0.0012 19.0 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.6 CQR57176.1 - 0.0014 18.0 0.2 0.0031 16.9 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain of transposase family ISL3 Mga PF05043.13 CQR57176.1 - 0.0017 18.9 0.1 0.0034 17.9 0.1 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain Put_DNA-bind_N PF06971.13 CQR57176.1 - 0.0018 18.2 0.1 0.0037 17.3 0.1 1.5 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_28 PF13518.6 CQR57176.1 - 0.0027 17.8 0.2 0.0068 16.5 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 CQR57176.1 - 0.0071 16.1 0.9 0.011 15.5 0.2 1.7 2 1 0 2 2 1 1 Domain of unknown function (DUF4423) RepL PF05732.11 CQR57176.1 - 0.0071 15.8 0.0 0.018 14.5 0.0 1.6 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) MarR PF01047.22 CQR57176.1 - 0.0073 16.2 0.1 0.018 15.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_Tnp_Tc3_2 PF01498.18 CQR57176.1 - 0.0076 16.5 0.3 0.02 15.2 0.3 1.7 1 0 0 1 1 1 1 Transposase CENP-B_N PF04218.13 CQR57176.1 - 0.0081 15.8 0.1 0.018 14.7 0.1 1.6 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 CQR57176.1 - 0.01 16.2 0.0 0.029 14.7 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein SpoIIID PF12116.8 CQR57176.1 - 0.011 15.8 0.1 0.03 14.4 0.1 1.7 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_29 PF13551.6 CQR57176.1 - 0.013 15.5 0.1 0.051 13.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.19 CQR57176.1 - 0.014 15.2 0.1 0.031 14.2 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 CQR57176.1 - 0.015 15.0 0.1 0.042 13.7 0.1 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.20 CQR57176.1 - 0.016 15.6 0.1 0.043 14.2 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4 PF04545.16 CQR57176.1 - 0.02 14.4 1.6 0.051 13.1 1.1 2.0 2 0 0 2 2 1 0 Sigma-70, region 4 RP-C PF03428.13 CQR57176.1 - 0.02 14.5 0.1 0.049 13.3 0.1 1.6 1 0 0 1 1 1 0 Replication protein C N-terminal domain TFIIE_alpha PF02002.17 CQR57176.1 - 0.021 14.6 0.1 0.045 13.6 0.1 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 CQR57176.1 - 0.023 14.4 0.2 0.27 11.0 0.0 2.6 3 0 0 3 3 3 0 Sigma-70, region 4 FeoC PF09012.10 CQR57176.1 - 0.025 14.7 0.1 0.071 13.2 0.1 1.8 1 0 0 1 1 1 0 FeoC like transcriptional regulator RRM_9 PF18444.1 CQR57176.1 - 0.041 13.7 0.1 0.24 11.3 0.1 2.3 1 1 1 2 2 2 0 RNA recognition motif HTH_6 PF01418.17 CQR57176.1 - 0.046 13.7 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family LPD22 PF18834.1 CQR57176.1 - 0.067 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 UvrC_HhH_N PF08459.11 CQR57176.1 - 0.072 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal YflT PF11181.8 CQR57178.1 - 2.6e-09 37.5 0.0 5.5e-09 36.4 0.0 1.6 1 1 0 1 1 1 1 Heat induced stress protein YflT DUF3341 PF11821.8 CQR57178.1 - 0.034 13.8 0.0 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) AI-2E_transport PF01594.16 CQR57179.1 - 8.4e-72 242.1 39.4 1.1e-71 241.6 39.4 1.2 1 0 0 1 1 1 1 AI-2E family transporter TRAM1 PF08390.11 CQR57179.1 - 0.00036 20.1 0.7 0.46 10.2 0.0 3.7 3 0 0 3 3 3 2 TRAM1-like protein Phage_holin_2_1 PF04971.12 CQR57179.1 - 0.0086 16.1 0.3 0.0086 16.1 0.3 2.3 2 0 0 2 2 2 1 Bacteriophage P21 holin S DUF4736 PF15883.5 CQR57179.1 - 0.54 9.9 2.9 2.6 7.7 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4736) DSX_dimer PF08828.10 CQR57180.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR57180.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR57181.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR57181.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR57181.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR57181.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) UDG PF03167.19 CQR57183.1 - 5.5e-26 91.4 0.0 7e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Cauli_VI PF01693.16 CQR57184.1 - 1.8e-17 63.4 6.2 4.7e-17 62.0 6.2 1.8 1 0 0 1 1 1 1 Caulimovirus viroplasmin RNase_H PF00075.24 CQR57184.1 - 2.6e-05 24.4 0.0 5.3e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.6 CQR57184.1 - 0.0029 17.4 0.0 0.0052 16.6 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like TetR_N PF00440.23 CQR57185.1 - 1.2e-09 37.8 0.0 2.8e-09 36.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 CQR57185.1 - 1.2e-05 25.6 0.4 2e-05 24.8 0.3 1.5 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 CQR57185.1 - 6.1e-05 22.9 0.0 9.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 CQR57185.1 - 6.7e-05 23.1 0.4 0.00011 22.4 0.4 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_29 PF17938.1 CQR57185.1 - 0.00012 22.2 0.1 0.0002 21.4 0.1 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 CQR57185.1 - 0.0066 16.7 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 CQR57185.1 - 0.01 16.0 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region DUF4754 PF15946.5 CQR57185.1 - 0.14 12.4 0.2 0.73 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4754) Podoplanin PF05808.11 CQR57186.1 - 0.0091 16.1 0.2 0.018 15.1 0.2 1.5 1 0 0 1 1 1 1 Podoplanin Mn_catalase PF05067.12 CQR57187.1 - 3.2e-87 292.1 0.0 3.8e-87 291.9 0.0 1.0 1 0 0 1 1 1 1 Manganese containing catalase Ferritin-like PF12902.7 CQR57187.1 - 0.099 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like HEAT PF02985.22 CQR57188.1 - 0.00025 21.0 0.3 0.013 15.7 0.0 3.0 3 0 0 3 3 3 1 HEAT repeat DNA_alkylation PF08713.11 CQR57188.1 - 0.00065 19.5 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 DNA alkylation repair enzyme DUF3300 PF11737.8 CQR57190.1 - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3300) Surfac_D-trimer PF09006.11 CQR57190.1 - 0.15 11.9 0.1 23 5.0 0.1 2.7 1 1 1 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation L_biotic_typeA PF04604.13 CQR57192.1 - 0.17 11.8 0.0 0.21 11.5 0.0 1.1 1 0 0 1 1 1 0 Type-A lantibiotic Peripla_BP_3 PF13377.6 CQR57193.1 - 2.1e-34 119.2 0.0 2.9e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR57193.1 - 3.2e-18 65.2 1.5 3.4e-18 65.1 0.3 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR57193.1 - 3.8e-17 62.6 0.0 4.6e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR57193.1 - 2.6e-14 53.4 0.0 3.9e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR57193.1 - 4e-05 23.6 0.0 9.4e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.6 CQR57193.1 - 0.0044 16.7 0.1 0.015 15.0 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR57193.1 - 0.0086 15.5 0.3 0.02 14.3 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.6 CQR57193.1 - 0.021 15.2 0.0 0.038 14.4 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 CQR57193.1 - 0.032 14.0 0.1 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain MarR_2 PF12802.7 CQR57193.1 - 0.045 13.6 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 CQR57193.1 - 0.097 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR57193.1 - 0.17 11.5 0.1 0.35 10.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mannitol_dh_C PF08125.13 CQR57194.1 - 2.6e-53 181.1 0.0 4.4e-53 180.3 0.0 1.4 1 0 0 1 1 1 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 CQR57194.1 - 1.1e-18 67.8 0.0 2e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Mannitol dehydrogenase Rossmann domain GD_AH_C PF04295.13 CQR57195.1 - 4.6e-155 516.2 0.0 5.4e-155 516.0 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 CQR57195.1 - 1.1e-15 58.0 0.1 2.2e-15 57.0 0.1 1.6 1 0 0 1 1 1 1 SAF domain UxaC PF02614.14 CQR57196.1 - 7e-207 687.8 0.0 7.8e-207 687.7 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase Lipase_GDSL_2 PF13472.6 CQR57197.1 - 5.3e-17 62.8 0.1 1e-16 61.9 0.0 1.5 1 1 1 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 CQR57197.1 - 1.6e-06 28.3 0.0 2.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase ALGX PF16822.5 CQR57197.1 - 0.087 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 SGNH hydrolase-like domain, acetyltransferase AlgX AP_endonuc_2 PF01261.24 CQR57198.1 - 4.2e-23 81.9 0.0 6.9e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_38N PF01074.22 CQR57199.1 - 4.4e-84 282.3 0.1 7.5e-84 281.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 CQR57199.1 - 2.3e-57 194.5 0.1 4e-57 193.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 CQR57199.1 - 2.2e-25 88.6 0.0 6.5e-25 87.1 0.0 1.9 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 CQR57199.1 - 1.1e-13 51.0 0.0 2.4e-13 50.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_57 PF03065.15 CQR57199.1 - 5e-05 22.6 0.1 9.6e-05 21.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Peripla_BP_3 PF13377.6 CQR57200.1 - 8.1e-17 62.0 0.0 2.2e-15 57.4 0.0 2.3 2 0 0 2 2 2 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR57200.1 - 9e-15 54.2 1.1 1.8e-14 53.2 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR57200.1 - 3.2e-06 26.8 0.0 5.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family HTH_3 PF01381.22 CQR57200.1 - 0.0069 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR57200.1 - 0.02 15.2 0.1 0.069 13.5 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 CQR57200.1 - 0.047 14.1 0.0 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain NAD_synthase PF02540.17 CQR57201.1 - 3.9e-28 98.2 0.0 5.8e-28 97.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 CQR57201.1 - 7.9e-23 81.1 0.0 2.7e-22 79.3 0.0 1.7 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase QueC PF06508.13 CQR57201.1 - 0.15 11.5 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC GreA_GreB PF01272.19 CQR57202.1 - 1.4e-13 50.5 0.0 3.9e-13 49.1 0.0 1.6 2 0 0 2 2 2 1 Transcription elongation factor, GreA/GreB, C-term Methyltransf_25 PF13649.6 CQR57203.1 - 4.2e-06 27.4 0.0 8.8e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR57203.1 - 0.00047 20.7 0.0 0.001 19.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57203.1 - 0.00054 19.8 0.0 0.00085 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 CQR57203.1 - 0.068 13.3 0.0 0.085 13.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Citrate_synt PF00285.21 CQR57203.1 - 0.098 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain RrnaAD PF00398.20 CQR57203.1 - 0.15 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Rrf2 PF02082.20 CQR57204.1 - 2.3e-28 98.4 0.5 3.4e-28 97.8 0.1 1.5 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 CQR57204.1 - 3.6e-07 30.0 0.0 6.5e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR57204.1 - 3.9e-07 29.9 0.0 7.4e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 CQR57204.1 - 0.00019 21.3 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR57204.1 - 0.00072 19.1 0.1 0.0026 17.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 CQR57204.1 - 0.0063 16.1 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RP-C PF03428.13 CQR57204.1 - 0.0098 15.6 0.3 0.03 14.0 0.0 1.8 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_3 PF01381.22 CQR57204.1 - 0.011 15.7 0.3 0.17 12.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix Fe_dep_repress PF01325.19 CQR57204.1 - 0.024 14.8 0.6 0.076 13.2 0.0 2.0 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 CQR57204.1 - 0.025 14.2 0.4 0.05 13.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TrmB PF01978.19 CQR57204.1 - 0.029 14.3 0.1 0.076 12.9 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_47 PF16221.5 CQR57204.1 - 0.029 13.9 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 winged helix-turn-helix HTH_20 PF12840.7 CQR57204.1 - 0.066 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 CQR57204.1 - 0.068 13.7 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 CQR57204.1 - 0.082 12.8 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Bac_rhamnosid6H PF17389.2 CQR57205.1 - 7.8e-37 127.3 0.2 9.6e-37 127.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Bac_rhamnosid_C PF17390.2 CQR57205.1 - 1.7e-23 82.2 0.0 2.8e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase C-terminal domain Bac_rhamnosid6H PF17389.2 CQR57206.1 - 7.6e-66 222.7 0.1 1.1e-65 222.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Bac_rhamnosid_N PF08531.10 CQR57206.1 - 2.7e-60 203.1 0.1 2.7e-60 203.1 0.1 2.0 2 0 0 2 2 2 1 Alpha-L-rhamnosidase N-terminal domain Bac_rhamnosid PF05592.11 CQR57206.1 - 4.2e-31 107.0 0.0 7.7e-31 106.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase concanavalin-like domain HTH_18 PF12833.7 CQR57207.1 - 2.4e-23 82.2 0.1 4.5e-23 81.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57207.1 - 5.5e-12 45.5 0.5 1.4e-05 25.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57207.1 - 3.4e-08 33.5 0.2 7.3e-08 32.4 0.2 1.7 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57207.1 - 8.6e-05 22.2 0.1 0.00015 21.4 0.1 1.4 1 0 0 1 1 1 1 Cupin domain ARD PF03079.14 CQR57207.1 - 0.042 14.0 0.1 0.078 13.2 0.1 1.4 1 0 0 1 1 1 0 ARD/ARD' family Cu_amine_oxidN1 PF07833.11 CQR57208.1 - 5.2e-05 23.6 0.1 0.00018 21.9 0.0 1.8 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain SlpA PF03217.14 CQR57208.1 - 0.057 14.0 0.3 0.2 12.3 0.1 2.0 2 0 0 2 2 2 0 Surface later protein A domain DUF3042 PF11240.8 CQR57208.1 - 2 8.5 4.8 0.74 9.9 1.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) Fer4_19 PF06902.11 CQR57209.1 - 3.1e-26 91.2 0.1 3.6e-26 91.0 0.1 1.0 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 CQR57209.1 - 0.0075 16.3 0.2 0.073 13.2 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 CQR57209.1 - 0.023 15.3 0.3 0.12 13.0 0.3 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 CQR57209.1 - 0.032 14.9 1.2 1.3 9.8 1.2 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4 PF00037.27 CQR57209.1 - 0.035 13.9 0.1 3.8 7.5 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 CQR57209.1 - 0.048 14.3 0.2 0.26 11.9 0.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 CQR57209.1 - 0.085 13.0 0.2 0.14 12.3 0.2 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Acetyltransf_CG PF14542.6 CQR57210.1 - 1.2e-21 76.6 0.0 1.4e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 CQR57210.1 - 3.4e-08 33.7 0.0 3.9e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR57210.1 - 5e-06 26.5 0.0 5.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR57210.1 - 0.00013 22.3 0.0 0.00014 22.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR57210.1 - 0.0019 18.2 0.0 0.0044 17.1 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 CQR57210.1 - 0.014 15.5 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR57210.1 - 0.047 13.7 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 FR47-like protein BPD_transp_1 PF00528.22 CQR57211.1 - 3e-12 46.6 23.1 2.9e-10 40.2 23.1 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Orf78 PF06024.12 CQR57211.1 - 0.015 15.6 0.8 0.06 13.7 0.1 2.2 2 0 0 2 2 2 0 Orf78 (ac78) NDUF_C2 PF06374.11 CQR57211.1 - 0.045 13.9 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) TRIQK PF15168.6 CQR57211.1 - 0.45 10.4 3.2 0.25 11.3 0.2 2.1 2 0 0 2 2 2 0 Triple QxxK/R motif-containing protein family Stevor PF17410.2 CQR57211.1 - 1.2 8.6 3.1 10 5.5 0.4 2.5 3 0 0 3 3 3 0 Subtelomeric Variable Open Reading frame HRG PF16954.5 CQR57211.1 - 2 8.9 8.6 12 6.4 0.2 3.8 3 0 0 3 3 3 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene BPD_transp_1 PF00528.22 CQR57212.1 - 1.8e-15 57.2 9.8 1.8e-15 57.2 9.8 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 CQR57212.1 - 0.0084 16.4 0.3 0.0084 16.4 0.3 2.2 3 0 0 3 3 3 1 Sigma factor regulator N-terminal DUF2718 PF10918.8 CQR57212.1 - 0.22 12.0 2.5 0.2 12.2 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2718) SBP_bac_1 PF01547.25 CQR57213.1 - 1.7e-16 61.1 8.0 4e-16 59.8 8.0 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57213.1 - 4.6e-12 46.3 6.2 8.1e-12 45.5 6.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR57214.1 - 3.3e-21 75.4 1.9 3.3e-21 75.4 1.9 2.7 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR57214.1 - 4.3e-10 39.8 5.4 4.3e-10 39.8 5.4 1.6 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR57214.1 - 3.5e-07 30.7 0.0 7.2e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR57214.1 - 0.041 13.9 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF438 PF04282.13 CQR57214.1 - 0.19 11.7 0.8 0.4 10.7 0.8 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF438) Response_reg PF00072.24 CQR57215.1 - 1.2e-20 73.7 0.1 3e-20 72.5 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57215.1 - 3.2e-19 69.0 0.0 6.5e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57215.1 - 6.1e-17 61.2 0.0 2.2e-09 37.2 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family STAR_dimer PF16544.5 CQR57215.1 - 0.09 12.4 0.1 2.7 7.6 0.0 3.1 3 0 0 3 3 3 0 Homodimerisation region of STAR domain protein DUF2975 PF11188.8 CQR57216.1 - 4.4e-38 130.1 5.4 4.4e-38 130.1 5.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2975) Sensor PF13796.6 CQR57216.1 - 2.7 8.0 10.4 3e+02 1.4 10.4 2.5 1 1 0 1 1 1 0 Putative sensor GWT1 PF06423.12 CQR57216.1 - 3.1 7.9 4.8 1.1 9.4 1.9 1.7 1 1 1 2 2 2 0 GWT1 HTH_26 PF13443.6 CQR57217.1 - 4.8e-24 84.6 0.3 5.3e-24 84.4 0.3 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR57217.1 - 1.2e-05 25.2 0.0 1.6e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 CQR57217.1 - 5.1e-05 23.1 0.2 5.8e-05 23.0 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR57217.1 - 0.00047 20.4 0.0 0.00057 20.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR57217.1 - 0.00049 20.1 0.0 0.00058 19.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR57217.1 - 0.01 15.7 0.1 0.026 14.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_35 PF13693.6 CQR57217.1 - 0.081 13.0 0.1 0.12 12.4 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 CQR57217.1 - 0.13 12.3 0.1 0.38 10.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Glyco_hydro_30 PF02055.16 CQR57218.1 - 2.1e-41 142.1 0.0 3.5e-41 141.3 0.0 1.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 30 TIM-barrel domain Glyco_hydro_59 PF02057.15 CQR57218.1 - 1.1e-12 47.8 0.0 1.6e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 59 Glyco_hydr_30_2 PF14587.6 CQR57218.1 - 4.5e-06 26.5 0.0 6e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 O-Glycosyl hydrolase family 30 Glyco_hydro_30C PF17189.4 CQR57218.1 - 1.2e-05 25.4 0.0 3e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 30 beta sandwich domain Phage_tail_X PF05489.12 CQR57218.1 - 0.086 12.5 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 Phage Tail Protein X Turandot PF07240.11 CQR57219.1 - 0.014 15.3 0.0 0.073 13.0 0.0 2.1 2 0 0 2 2 2 0 Stress-inducible humoral factor Turandot DUF3502 PF12010.8 CQR57219.1 - 0.076 13.7 0.3 0.076 13.7 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3502) BPD_transp_1 PF00528.22 CQR57220.1 - 1e-13 51.4 24.6 4.7e-13 49.3 24.6 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57221.1 - 4.3e-17 62.4 6.2 4.3e-17 62.4 6.2 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peripla_BP_3 PF13377.6 CQR57222.1 - 3.4e-37 128.3 0.0 5.4e-37 127.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR57222.1 - 1.1e-34 120.1 0.0 1.5e-34 119.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR57222.1 - 8.8e-16 58.2 0.0 1.1e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 CQR57222.1 - 9.2e-15 54.2 0.6 2.3e-14 52.9 0.6 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_19 PF12844.7 CQR57222.1 - 0.0053 16.8 0.1 0.05 13.6 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR57222.1 - 0.0081 15.5 0.1 0.016 14.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 CQR57222.1 - 0.018 15.1 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.6 CQR57222.1 - 0.02 14.4 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 CQR57222.1 - 0.037 13.8 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 CQR57222.1 - 0.066 13.0 0.0 0.41 10.5 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 CQR57222.1 - 0.073 12.9 0.2 0.17 11.7 0.2 1.6 1 0 0 1 1 1 0 MerR family regulatory protein TetR_N PF00440.23 CQR57222.1 - 0.11 12.3 0.1 0.33 10.8 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_AraC PF00165.23 CQR57222.1 - 0.13 12.4 0.0 0.81 9.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_10 PF04967.12 CQR57222.1 - 0.16 11.8 0.1 0.89 9.4 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain GGDEF PF00990.21 CQR57223.1 - 1.8e-43 148.1 0.0 4.7e-43 146.7 0.0 1.8 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 CQR57223.1 - 1.6e-28 100.2 1.4 1.6e-28 100.2 1.4 1.5 2 0 0 2 2 2 1 Cache domain dCache_2 PF08269.11 CQR57223.1 - 0.04 13.1 0.1 0.077 12.2 0.1 1.4 1 0 0 1 1 1 0 Cache domain GGDEF_2 PF17853.1 CQR57223.1 - 0.078 13.2 0.1 0.25 11.6 0.1 1.9 1 0 0 1 1 1 0 GGDEF-like domain FtsA PF14450.6 CQR57223.1 - 0.09 13.2 0.2 7 7.1 0.0 3.1 2 1 0 2 2 2 0 Cell division protein FtsA DAGK_cat PF00781.24 CQR57223.1 - 0.095 12.3 0.0 0.37 10.4 0.0 2.0 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF4277 PF14104.6 CQR57223.1 - 0.15 12.4 0.1 0.31 11.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4277) Laminin_G_3 PF13385.6 CQR57224.1 - 3.1e-36 124.8 4.0 3.1e-36 124.8 4.0 3.0 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.24 CQR57224.1 - 2.1e-06 28.4 0.2 1.1e-05 26.0 0.0 2.3 2 0 0 2 2 2 1 Laminin G domain Pentaxin PF00354.17 CQR57224.1 - 0.00049 19.8 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 Pentaxin family Laminin_G_1 PF00054.23 CQR57224.1 - 0.0045 17.2 0.0 0.015 15.5 0.0 1.8 1 0 0 1 1 1 1 Laminin G domain CBM-like PF14683.6 CQR57224.1 - 0.41 10.5 6.7 0.31 10.9 0.5 3.5 3 1 0 3 3 3 0 Polysaccharide lyase family 4, domain III His_kinase PF06580.13 CQR57225.1 - 7.5e-21 74.3 0.8 1.7e-20 73.1 0.8 1.6 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR57225.1 - 3.3e-12 46.7 0.5 3.3e-12 46.7 0.5 1.8 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR57225.1 - 5.8e-09 36.5 0.1 1.5e-08 35.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57225.1 - 4.7e-06 26.9 0.0 1.7e-05 25.1 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 CQR57225.1 - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR57226.1 - 5e-22 78.2 0.0 9.2e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57226.1 - 1.5e-20 73.2 1.7 3.3e-20 72.1 0.8 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57226.1 - 4.8e-18 64.8 1.9 2.5e-09 37.0 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family BPD_transp_1 PF00528.22 CQR57227.1 - 1.4e-18 67.3 13.2 1.4e-18 67.3 13.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57228.1 - 1.5e-14 54.2 23.0 1.5e-14 54.2 23.0 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 CQR57228.1 - 0.074 13.2 0.5 0.19 11.9 0.5 1.6 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_1 PF01547.25 CQR57229.1 - 8.5e-28 98.2 11.4 8.5e-28 98.2 11.4 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57229.1 - 2e-25 90.2 11.2 2.9e-25 89.6 11.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Glyco_tran_WecB PF03808.13 CQR57229.1 - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Laminin_G_3 PF13385.6 CQR57230.1 - 9.8e-54 181.6 15.6 2.4e-34 118.7 0.1 4.4 4 0 0 4 4 4 2 Concanavalin A-like lectin/glucanases superfamily Big_4 PF07532.11 CQR57230.1 - 9.3e-51 169.4 35.1 8.8e-14 51.0 1.1 5.9 5 0 0 5 5 5 4 Bacterial Ig-like domain (group 4) SLH PF00395.20 CQR57230.1 - 2.8e-28 97.6 0.3 2e-09 37.3 0.1 3.9 3 0 0 3 3 3 3 S-layer homology domain Laminin_G_2 PF02210.24 CQR57230.1 - 0.0048 17.5 0.0 0.05 14.2 0.0 2.8 2 0 0 2 2 2 1 Laminin G domain Y_Y_Y PF07495.13 CQR57230.1 - 0.0088 16.0 0.0 0.12 12.4 0.0 2.9 2 0 0 2 2 2 1 Y_Y_Y domain Glyco_hydro_127 PF07944.12 CQR57231.1 - 4.3e-167 556.7 0.0 4.9e-167 556.5 0.0 1.0 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 CQR57231.1 - 0.025 13.7 0.2 0.047 12.7 0.2 1.5 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 Glyco_hydro_9 PF00759.19 CQR57231.1 - 0.17 11.3 0.2 0.27 10.6 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 9 BPD_transp_1 PF00528.22 CQR57232.1 - 9.2e-18 64.6 20.4 9.2e-18 64.6 20.4 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57233.1 - 1e-09 38.4 26.2 4.2e-09 36.4 26.2 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Cation_ATPase_C PF00689.21 CQR57233.1 - 0.91 9.2 13.6 0.031 14.0 5.8 2.1 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus SBP_bac_1 PF01547.25 CQR57234.1 - 8.9e-31 108.0 7.4 1.3e-30 107.4 7.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57234.1 - 6e-26 91.9 7.9 7.4e-26 91.6 7.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57234.1 - 0.0053 16.2 0.2 0.025 14.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein RestrictionMunI PF11407.8 CQR57234.1 - 0.053 13.2 0.0 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Type II restriction enzyme MunI LPAM_2 PF13627.6 CQR57234.1 - 2.7 7.9 5.2 4.6 7.2 5.2 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site HTH_18 PF12833.7 CQR57235.1 - 3.2e-21 75.4 0.4 6.3e-21 74.4 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57235.1 - 4.1e-16 58.6 0.4 1.1e-09 38.1 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57235.1 - 2.7e-05 24.1 3.7 3.6e-05 23.7 0.2 2.5 3 0 0 3 3 3 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57235.1 - 0.00047 19.8 0.2 0.00093 18.9 0.2 1.4 1 0 0 1 1 1 1 Cupin domain Spore_permease PF03845.13 CQR57236.1 - 8.6e-53 179.2 36.5 1.3e-52 178.6 36.5 1.3 1 0 0 1 1 1 1 Spore germination protein Spore_GerAC PF05504.11 CQR57237.1 - 4.1e-37 127.9 1.3 5.8e-37 127.4 1.3 1.2 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal MtrH PF02007.18 CQR57237.1 - 0.0072 15.5 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit GerA PF03323.13 CQR57238.1 - 8.3e-193 641.1 3.3 9.5e-193 640.9 3.3 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein B3R PF17057.5 CQR57238.1 - 0.096 12.9 0.0 0.56 10.4 0.0 2.1 2 0 0 2 2 2 0 Poxviridae B3 protein DUF2207 PF09972.9 CQR57239.1 - 1.5 7.5 2.6 1.9 7.1 2.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Pentapeptide PF00805.22 CQR57243.1 - 6.9e-31 105.5 8.9 4.6e-10 38.9 0.1 5.1 2 2 1 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 CQR57243.1 - 1.9e-25 88.8 3.9 2.5e-09 37.1 0.1 3.1 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 CQR57243.1 - 2.5e-18 65.9 8.0 1.2e-05 25.3 3.0 3.9 3 1 2 5 5 5 4 Pentapeptide repeats (9 copies) CfAFP PF05264.11 CQR57243.1 - 0.0086 16.1 0.2 0.76 9.8 1.4 2.1 2 0 0 2 2 2 1 Choristoneura fumiferana antifreeze protein (CfAFP) DUF2812 PF11193.8 CQR57244.1 - 7.8e-33 113.0 1.7 1e-32 112.6 1.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2812) DUF4177 PF13783.6 CQR57244.1 - 0.031 14.6 0.0 0.071 13.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) PadR PF03551.14 CQR57245.1 - 2.5e-13 49.8 0.0 3.9e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PaREP1 PF05942.11 CQR57245.1 - 0.045 13.7 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Mrr_N PF14338.6 CQR57245.1 - 0.081 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_34 PF13601.6 CQR57245.1 - 0.084 13.1 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Glyco_hydro2_C5 PF18565.1 CQR57247.1 - 1.2e-32 111.8 0.0 4.1e-32 110.1 0.0 1.9 2 0 0 2 2 2 1 Glycoside hydrolase family 2 C-terminal domain 5 Glyco_hydro_2_C PF02836.17 CQR57247.1 - 1.7e-22 80.0 0.1 2.5e-22 79.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 CQR57247.1 - 1e-19 71.0 0.9 4.4e-19 69.0 0.9 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain DUF4982 PF16355.5 CQR57247.1 - 3.4e-16 58.9 0.0 5.5e-15 55.1 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4982) Glyco_hydro_2 PF00703.21 CQR57247.1 - 4.5e-14 53.1 0.0 8.4e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Big_1 PF02369.16 CQR57247.1 - 0.0011 19.0 0.3 0.011 15.7 0.1 2.5 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) CBM_6 PF03422.15 CQR57247.1 - 0.0011 19.3 0.0 4.2 7.7 0.0 3.7 3 0 0 3 3 3 2 Carbohydrate binding module (family 6) Invasin_D3 PF09134.10 CQR57247.1 - 0.002 18.4 0.1 0.012 15.9 0.0 2.4 2 1 1 3 3 3 1 Invasin, domain 3 BPD_transp_1 PF00528.22 CQR57248.1 - 3.4e-13 49.7 14.6 3.4e-13 49.7 14.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57249.1 - 6e-15 55.4 13.7 6e-15 55.4 13.7 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR57250.1 - 1.8e-18 67.6 11.4 2.7e-18 67.0 11.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR57250.1 - 7.8e-06 26.6 0.7 7.8e-06 26.6 0.7 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF3502) SBP_bac_11 PF13531.6 CQR57250.1 - 0.03 14.1 0.1 0.25 11.1 0.2 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein UBA PF00627.31 CQR57250.1 - 0.071 13.0 1.1 8.7 6.4 0.0 2.5 2 0 0 2 2 2 0 UBA/TS-N domain HTH_18 PF12833.7 CQR57251.1 - 2.5e-19 69.3 0.0 1.3e-18 67.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57251.1 - 7.3e-17 61.0 0.1 7.9e-09 35.4 0.0 3.0 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR57251.1 - 1e-15 58.2 3.2 1.8e-15 57.4 3.2 1.4 1 0 0 1 1 1 1 Cache domain HTH_23 PF13384.6 CQR57251.1 - 2.7e-06 27.0 0.0 0.0041 16.9 0.0 3.2 3 0 0 3 3 3 2 Homeodomain-like domain GGDEF_2 PF17853.1 CQR57251.1 - 0.0011 19.2 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 GGDEF-like domain HTH_28 PF13518.6 CQR57251.1 - 0.0021 18.2 0.0 2.1 8.5 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR57251.1 - 0.02 14.7 0.1 0.95 9.4 0.0 3.1 3 0 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 CQR57251.1 - 0.095 12.7 0.0 0.56 10.2 0.0 2.3 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain NIF3 PF01784.18 CQR57252.1 - 2e-29 102.9 0.0 2.8e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) RdDM_RDM1 PF09187.10 CQR57253.1 - 0.08 13.0 0.1 0.088 12.9 0.1 1.1 1 0 0 1 1 1 0 RNA-directed DNA methylation 1 Glyco_hydro_67M PF07488.12 CQR57254.1 - 1.5e-155 517.2 0.0 2.1e-155 516.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 middle domain Glyco_hydro_67C PF07477.12 CQR57254.1 - 1.8e-96 322.0 1.1 2.7e-96 321.4 1.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 C-terminus Glyco_hydro_67N PF03648.14 CQR57254.1 - 1.4e-14 54.4 0.0 2.3e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Glyco_hydro_20b PF02838.15 CQR57254.1 - 0.0058 17.4 0.0 0.012 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 Glyco_hydro_52 PF03512.13 CQR57255.1 - 1.8e-177 590.5 0.0 2.3e-177 590.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 52 Glyco_hydr_116N PF12215.8 CQR57255.1 - 0.0089 15.5 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term HTH_18 PF12833.7 CQR57256.1 - 5.2e-24 84.3 0.1 1e-23 83.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57256.1 - 4.7e-21 74.4 0.2 2.2e-10 40.3 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57256.1 - 1.2e-16 60.8 0.1 2.9e-16 59.6 0.1 1.7 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57256.1 - 1.6e-09 37.3 0.0 3.1e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_23 PF13384.6 CQR57256.1 - 0.0033 17.2 0.0 0.088 12.6 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain DUF4863 PF16155.5 CQR57256.1 - 0.0095 15.8 0.1 0.015 15.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4863) Cupin_3 PF05899.12 CQR57256.1 - 0.013 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) HTH_28 PF13518.6 CQR57256.1 - 0.024 14.8 0.0 0.085 13.0 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain Cupin_7 PF12973.7 CQR57256.1 - 0.031 14.2 0.2 0.07 13.1 0.2 1.5 1 0 0 1 1 1 0 ChrR Cupin-like domain DMSP_lyase PF16867.5 CQR57256.1 - 0.068 12.8 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase EutQ PF06249.12 CQR57256.1 - 0.072 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ KdgM PF06178.13 CQR57256.1 - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Oligogalacturonate-specific porin protein (KdgM) Cupin_6 PF12852.7 CQR57256.1 - 0.19 11.4 0.0 0.44 10.2 0.0 1.7 1 1 0 1 1 1 0 Cupin Glyco_hydro_43 PF04616.14 CQR57257.1 - 1.3e-108 362.7 0.0 9.8e-108 359.8 0.1 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR57257.1 - 2e-59 200.8 0.0 3.3e-59 200.0 0.0 1.4 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain Glyco_hydro_32N PF00251.20 CQR57257.1 - 0.0027 17.3 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain DUF1349 PF07081.11 CQR57257.1 - 0.01 15.5 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) ILVD_EDD PF00920.21 CQR57258.1 - 3.9e-108 362.3 0.0 5.2e-108 361.9 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family IclR PF01614.18 CQR57259.1 - 3.7e-29 101.2 0.0 1e-28 99.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 CQR57259.1 - 1e-10 41.2 0.0 1.8e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 CQR57259.1 - 0.0005 19.9 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR57259.1 - 0.00067 20.1 0.0 0.0018 18.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 CQR57259.1 - 0.0061 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 CQR57259.1 - 0.069 13.0 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 CQR57259.1 - 0.075 13.2 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DHDPS PF00701.22 CQR57260.1 - 1.4e-77 260.3 0.0 1.5e-77 260.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Atg29_N PF18388.1 CQR57260.1 - 0.086 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Atg29 N-terminal domain His_kinase PF06580.13 CQR57261.1 - 2.3e-21 75.9 2.9 2.5e-21 75.8 0.2 2.5 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR57261.1 - 1.2e-16 61.2 2.1 1.2e-16 61.2 2.1 1.7 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR57261.1 - 5.9e-12 45.8 0.0 1.8e-11 44.3 0.0 1.9 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR57261.1 - 6.5e-06 26.6 0.1 1.7e-05 25.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF948 PF06103.11 CQR57261.1 - 0.0043 17.3 0.4 0.089 13.1 0.1 2.4 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) HATPase_c_3 PF13589.6 CQR57261.1 - 0.02 14.7 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR57261.1 - 0.15 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 CQR57262.1 - 1.9e-29 102.1 0.1 3.9e-29 101.1 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57262.1 - 1.4e-19 70.2 0.0 4.4e-19 68.5 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57262.1 - 6.6e-16 58.0 0.1 2.9e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family THP2 PF09432.10 CQR57262.1 - 0.0011 19.0 0.2 0.007 16.4 0.0 2.2 1 1 0 2 2 2 1 Tho complex subunit THP2 BPD_transp_1 PF00528.22 CQR57263.1 - 4.6e-14 52.6 11.7 4.6e-14 52.6 11.7 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2748 PF10871.8 CQR57263.1 - 0.088 11.4 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2748) DUF2407_C PF13373.6 CQR57263.1 - 0.33 11.1 1.4 3.9 7.6 0.1 2.4 2 0 0 2 2 2 0 DUF2407 C-terminal domain Bac_export_2 PF01312.19 CQR57263.1 - 0.41 9.8 7.1 0.55 9.4 2.9 2.1 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family BPD_transp_1 PF00528.22 CQR57264.1 - 6.5e-16 58.6 13.0 6.5e-16 58.6 13.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component CytB6-F_Fe-S PF08802.10 CQR57264.1 - 6.4 6.9 6.8 0.56 10.3 0.4 2.6 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit SBP_bac_8 PF13416.6 CQR57265.1 - 8.9e-25 88.1 6.5 8.9e-25 88.1 6.5 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR57265.1 - 3.6e-12 46.9 11.5 3.6e-12 46.9 11.5 3.3 3 1 0 3 3 3 2 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR57265.1 - 1.1 9.9 13.4 1.3 9.7 4.7 4.2 3 2 0 3 3 3 0 Domain of unknown function (DUF3502) Glyco_hydro_115 PF15979.5 CQR57266.1 - 2e-65 221.5 0.0 3e-65 220.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 115 SLH PF00395.20 CQR57267.1 - 6.3e-27 93.3 1.6 2.2e-10 40.4 0.1 3.9 3 0 0 3 3 3 3 S-layer homology domain Cadherin-like PF12733.7 CQR57267.1 - 1e-23 83.6 7.2 3.8e-11 43.4 1.0 4.2 3 0 0 3 3 3 2 Cadherin-like beta sandwich domain CBM_X2 PF03442.14 CQR57267.1 - 2.9e-19 68.9 2.0 2.6e-17 62.7 0.0 4.7 4 1 1 5 5 5 1 Carbohydrate binding domain X2 CarboxypepD_reg PF13620.6 CQR57267.1 - 5.8e-17 61.7 25.3 1.4e-09 38.1 2.7 5.0 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain Beta_helix PF13229.6 CQR57267.1 - 2.3e-10 40.6 24.4 4.6e-08 33.1 23.8 4.0 1 1 1 2 2 2 2 Right handed beta helix region CarbopepD_reg_2 PF13715.6 CQR57267.1 - 1.6e-07 31.2 3.1 0.0059 16.6 0.2 2.8 2 0 0 2 2 2 2 CarboxypepD_reg-like domain SdrD_B PF17210.3 CQR57267.1 - 9e-05 22.7 10.5 0.00033 20.9 0.1 4.3 5 0 0 5 5 5 2 SdrD B-like domain Chondroitinas_B PF14592.6 CQR57267.1 - 0.015 14.2 0.6 0.14 11.0 0.0 2.4 2 1 1 3 3 3 0 Chondroitinase B MetallophosN PF16371.5 CQR57267.1 - 0.023 14.9 1.4 0.046 14.0 0.4 2.1 2 0 0 2 2 2 0 N terminal of Calcineurin-like phosphoesterase SBP_bac_1 PF01547.25 CQR57268.1 - 1.1e-25 91.2 19.8 1.1e-25 91.2 19.8 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57268.1 - 7.3e-08 32.1 0.7 0.0019 17.7 0.0 2.8 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR57269.1 - 2.1e-21 76.2 0.0 4.1e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57269.1 - 3.5e-18 65.6 0.0 6.2e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57269.1 - 3.1e-17 62.2 0.5 2.6e-07 30.5 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57269.1 - 8.6e-05 22.8 0.0 0.00018 21.7 0.0 1.5 1 0 0 1 1 1 1 GGDEF-like domain Rrf2 PF02082.20 CQR57269.1 - 0.08 13.3 0.1 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator His_kinase PF06580.13 CQR57270.1 - 4.7e-24 84.5 0.6 1e-23 83.4 0.6 1.6 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR57270.1 - 2.9e-08 33.8 6.1 6.1e-08 32.7 6.1 1.5 1 0 0 1 1 1 1 Cache domain PspB PF06667.12 CQR57270.1 - 0.011 15.8 0.1 0.69 10.0 0.0 2.6 2 0 0 2 2 2 0 Phage shock protein B PEP-utilisers_N PF05524.13 CQR57270.1 - 0.069 13.3 0.4 1.6 8.9 0.0 2.7 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Cnl2_NKP2 PF09447.10 CQR57270.1 - 0.14 12.3 1.2 3.6 7.8 0.2 3.2 3 0 0 3 3 3 0 Cnl2/NKP2 family protein Spore_III_AF PF09581.10 CQR57270.1 - 0.18 11.8 2.0 0.3 11.1 0.0 2.3 3 0 0 3 3 3 0 Stage III sporulation protein AF (Spore_III_AF) TelA PF05816.11 CQR57270.1 - 0.27 10.3 4.2 0.25 10.4 0.1 2.6 3 0 0 3 3 3 0 Toxic anion resistance protein (TelA) MrpF_PhaF PF04066.13 CQR57270.1 - 0.75 10.2 5.6 1.4 9.4 1.8 2.4 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) BPD_transp_1 PF00528.22 CQR57271.1 - 3.5e-18 66.0 24.8 4.6e-18 65.6 14.7 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57272.1 - 1.3e-10 41.3 25.2 1.3e-10 41.3 25.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DcuC PF03606.15 CQR57274.1 - 5.1e-123 411.0 29.1 6e-123 410.7 29.1 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.13 CQR57274.1 - 4.4e-05 21.9 8.1 4.4e-05 21.9 8.1 2.2 2 0 0 2 2 2 1 AbgT putative transporter family DctM PF06808.12 CQR57274.1 - 0.0018 17.1 37.3 0.03 13.2 14.5 2.2 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component FixS PF03597.15 CQR57274.1 - 0.091 12.5 0.1 0.091 12.5 0.1 4.6 6 0 0 6 6 6 0 Cytochrome oxidase maturation protein cbb3-type PepSY_TM PF03929.16 CQR57274.1 - 1.9 8.1 5.8 12 5.5 0.3 2.6 2 1 0 2 2 2 0 PepSY-associated TM region Amidohydro_3 PF07969.11 CQR57275.1 - 5.1e-56 191.1 0.7 6.3e-56 190.8 0.7 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 CQR57275.1 - 1e-19 71.1 0.0 3.3e-19 69.4 0.0 1.8 2 1 0 2 2 2 1 Amidohydrolase family UTRA PF07702.13 CQR57276.1 - 5.6e-32 110.5 0.1 8.6e-32 109.9 0.1 1.3 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 CQR57276.1 - 4.4e-20 71.1 0.0 9.1e-20 70.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.6 CQR57276.1 - 0.00063 19.4 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 CQR57276.1 - 0.0026 17.5 0.0 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 CQR57276.1 - 0.0068 16.3 0.1 0.014 15.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 CQR57276.1 - 0.023 15.0 0.0 0.048 14.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 CQR57276.1 - 0.045 14.2 0.0 0.092 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR57276.1 - 0.058 13.0 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 CQR57276.1 - 0.062 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 CQR57276.1 - 0.064 13.5 0.1 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 CQR57276.1 - 0.091 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PfkB PF00294.24 CQR57277.1 - 1.3e-27 96.9 0.0 2.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase SIS PF01380.22 CQR57278.1 - 1.4e-15 57.3 0.0 4.4e-10 39.5 0.0 2.3 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 CQR57278.1 - 1e-06 28.8 0.1 2.9e-05 24.1 0.0 2.6 3 0 0 3 3 3 1 SIS domain Creatininase PF02633.14 CQR57278.1 - 0.048 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Creatinine amidohydrolase YjeF_N PF03853.15 CQR57278.1 - 0.072 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus HATPase_c PF02518.26 CQR57279.1 - 3e-31 108.2 0.8 5.3e-31 107.4 0.8 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR57279.1 - 1.6e-14 53.7 0.2 3.5e-14 52.6 0.2 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR57279.1 - 1.7e-14 53.9 0.0 3.6e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR57279.1 - 0.00034 20.4 0.1 0.00067 19.5 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR57279.1 - 0.00067 19.5 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain DUF2250 PF10007.9 CQR57279.1 - 0.15 12.1 0.3 0.51 10.5 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Response_reg PF00072.24 CQR57280.1 - 8.8e-30 103.2 0.0 1.5e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR57280.1 - 3.9e-23 81.3 0.1 9.2e-23 80.1 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR57280.1 - 0.0045 17.2 0.0 0.0084 16.4 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HTH_11 PF08279.12 CQR57280.1 - 0.042 13.8 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain Peptidase_M90 PF06167.12 CQR57280.1 - 0.11 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Glucose-regulated metallo-peptidase M90 DUF3139 PF11337.8 CQR57281.1 - 0.0057 17.3 1.3 0.013 16.1 1.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3139) UxaC PF02614.14 CQR57282.1 - 8.2e-206 684.3 0.0 9.2e-206 684.1 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase BT1 PF03092.16 CQR57282.1 - 0.12 10.6 0.0 0.17 10.1 0.0 1.1 1 0 0 1 1 1 0 BT1 family Mannitol_dh_C PF08125.13 CQR57283.1 - 3.9e-30 105.2 0.0 1.6e-29 103.1 0.0 1.9 2 1 0 2 2 2 1 Mannitol dehydrogenase C-terminal domain Mannitol_dh PF01232.23 CQR57283.1 - 2.9e-13 50.2 0.0 4.5e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Mannitol dehydrogenase Rossmann domain UxuA PF03786.13 CQR57284.1 - 4.6e-159 528.9 0.1 5.2e-159 528.7 0.1 1.0 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 CQR57284.1 - 2.1e-12 46.9 0.0 2.9e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 CQR57284.1 - 0.024 15.0 0.1 0.097 13.0 0.0 2.1 2 1 0 2 2 2 0 Radical SAM superfamily DHHA1 PF02272.19 CQR57284.1 - 0.18 12.2 0.1 24 5.4 0.0 2.3 2 0 0 2 2 2 0 DHHA1 domain FCD PF07729.12 CQR57285.1 - 1.1e-18 67.9 1.8 1.6e-18 67.3 1.8 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 CQR57285.1 - 1.7e-11 43.6 0.3 2.2e-10 40.0 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family CcdA PF07362.12 CQR57287.1 - 0.021 15.2 0.4 0.023 15.1 0.4 1.1 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 CQR57287.1 - 0.048 14.4 2.0 0.061 14.1 2.0 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor THB PF18362.1 CQR57287.1 - 0.083 12.5 0.5 0.16 11.6 0.5 1.4 1 0 0 1 1 1 0 Tri-helix bundle domain RWP-RK PF02042.15 CQR57287.1 - 0.18 11.8 0.7 0.23 11.5 0.2 1.6 1 1 1 2 2 2 0 RWP-RK domain SicP-binding PF09119.10 CQR57288.1 - 0.12 12.3 0.1 0.47 10.5 0.0 1.8 1 1 1 2 2 2 0 SicP binding YvrJ PF12841.7 CQR57289.1 - 9.9e-07 28.2 2.6 7.4e-05 22.2 0.3 2.2 2 0 0 2 2 2 2 YvrJ protein family S_100 PF01023.19 CQR57289.1 - 0.0098 15.6 0.0 0.024 14.4 0.0 1.6 2 0 0 2 2 2 1 S-100/ICaBP type calcium binding domain LST1 PF05083.13 CQR57289.1 - 0.091 13.1 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 LST-1 protein AP_endonuc_2 PF01261.24 CQR57291.1 - 1.8e-30 105.9 0.0 2.4e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Methyltransf_4 PF02390.17 CQR57291.1 - 0.13 11.8 0.0 0.24 10.8 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase ZnuA PF01297.17 CQR57291.1 - 0.2 11.0 0.0 0.37 10.2 0.0 1.4 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic DcuA_DcuB PF03605.14 CQR57292.1 - 1.2e-137 458.8 25.9 1.6e-137 458.3 25.9 1.2 1 0 0 1 1 1 1 Anaerobic c4-dicarboxylate membrane transporter DUF962 PF06127.11 CQR57292.1 - 0.096 12.8 9.5 1.9 8.6 2.0 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF962) DUF2897 PF11446.8 CQR57292.1 - 0.8 9.6 3.1 4.2 7.3 0.0 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) PfkB PF00294.24 CQR57293.1 - 7.8e-24 84.5 0.0 1.6e-23 83.5 0.0 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase RNA_pol_N PF01194.17 CQR57293.1 - 0.084 13.2 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 RNA polymerases N / 8 kDa subunit SIS PF01380.22 CQR57294.1 - 2.9e-14 53.0 0.0 5.1e-11 42.5 0.0 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 CQR57294.1 - 1.6e-08 34.6 0.1 2.8e-06 27.4 0.0 2.5 2 0 0 2 2 2 2 SIS domain UTRA PF07702.13 CQR57295.1 - 1.4e-32 112.4 0.0 2.9e-32 111.4 0.0 1.5 2 0 0 2 2 2 1 UTRA domain GntR PF00392.21 CQR57295.1 - 3.3e-20 71.5 0.0 5.8e-20 70.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.6 CQR57295.1 - 0.016 14.9 0.0 0.038 13.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR57295.1 - 0.026 14.5 0.0 0.065 13.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 CQR57295.1 - 0.056 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DSX_dimer PF08828.10 CQR57296.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR57296.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR57297.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR57297.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR57297.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR57297.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) LytR_cpsA_psr PF03816.14 CQR57299.1 - 6.3e-29 101.1 0.2 8.4e-29 100.7 0.2 1.2 1 0 0 1 1 1 1 Cell envelope-related transcriptional attenuator domain SBF_like PF13593.6 CQR57300.1 - 1e-19 71.0 21.1 1.3e-19 70.7 21.1 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.16 CQR57300.1 - 2.3e-18 66.6 16.8 2.3e-18 66.6 16.8 2.5 2 1 0 3 3 3 1 Sodium Bile acid symporter family RHD3 PF05879.12 CQR57300.1 - 0.27 9.3 0.5 0.35 8.9 0.5 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Fn3-like PF14310.6 CQR57301.1 - 2.3e-20 72.5 0.0 2.8e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Fibronectin type III-like domain Zincin_1 PF06262.11 CQR57302.1 - 9.5e-05 22.4 0.0 0.00026 21.0 0.0 1.7 1 1 1 2 2 2 1 Zincin-like metallopeptidase KGG PF10685.9 CQR57303.1 - 3.9e-11 42.8 17.0 1.6e-06 28.1 0.7 3.3 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 CQR57303.1 - 0.011 16.2 12.6 0.043 14.3 12.6 1.8 1 1 0 1 1 1 0 Small hydrophilic plant seed protein SASP PF00269.20 CQR57303.1 - 0.94 9.5 6.3 9.1 6.4 1.3 2.2 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Glyco_hydro_125 PF06824.11 CQR57304.1 - 0.17 10.7 0.0 3.7 6.3 0.0 2.2 2 0 0 2 2 2 0 Metal-independent alpha-mannosidase (GH125) DUF2961 PF11175.8 CQR57305.1 - 7.2e-89 297.5 2.2 9.8e-89 297.0 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2961) IncE PF17627.2 CQR57305.1 - 0.13 12.3 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Inclusion membrane protein E BPD_transp_1 PF00528.22 CQR57306.1 - 6.7e-19 68.3 15.7 6.7e-19 68.3 15.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Tom6 PF17112.5 CQR57306.1 - 0.027 14.0 0.2 0.097 12.2 0.2 2.0 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom6, fungal BPD_transp_1 PF00528.22 CQR57307.1 - 5.3e-16 58.9 19.3 5.3e-16 58.9 19.3 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 CQR57307.1 - 0.013 15.6 0.2 0.032 14.3 0.2 1.6 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_1 PF01547.25 CQR57308.1 - 1.6e-33 117.0 11.9 2.9e-33 116.2 11.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57308.1 - 3e-33 115.9 8.1 4.3e-33 115.3 8.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ATP-synt_J PF04911.12 CQR57308.1 - 0.023 14.3 0.0 0.072 12.7 0.0 1.8 1 0 0 1 1 1 0 ATP synthase j chain PilN_bio_d PF18222.1 CQR57308.1 - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 PilN biogenesis protein dimerization domain His_kinase PF06580.13 CQR57309.1 - 1.8e-20 73.1 1.8 3.8e-20 72.0 1.8 1.6 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR57309.1 - 1.5e-10 41.3 0.2 2.9e-10 40.3 0.0 1.6 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR57309.1 - 1.4e-08 35.0 0.0 2.5e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 CQR57309.1 - 2.2e-06 28.2 0.0 4.5e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR57309.1 - 0.0042 16.9 0.0 0.0077 16.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR57309.1 - 0.0079 16.1 0.0 0.034 14.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Glucan_synthase PF02364.15 CQR57309.1 - 0.047 11.9 0.0 0.088 11.0 0.0 1.3 1 0 0 1 1 1 0 1,3-beta-glucan synthase component Response_reg PF00072.24 CQR57310.1 - 2.8e-27 95.1 0.1 5.7e-27 94.1 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57310.1 - 5.1e-22 77.9 2.3 1.4e-21 76.6 0.9 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57310.1 - 6.8e-18 64.3 2.0 8.2e-09 35.3 0.0 2.9 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57310.1 - 2.2e-06 27.9 0.0 2.4e-05 24.6 0.0 2.7 2 1 0 2 2 2 1 GGDEF-like domain SinI PF08671.10 CQR57310.1 - 0.59 10.0 3.3 7.9 6.4 0.0 3.1 3 0 0 3 3 3 0 Anti-repressor SinI PAS_4 PF08448.10 CQR57311.1 - 2.5e-05 24.5 0.2 23 5.3 0.0 5.0 1 1 6 7 7 7 2 PAS fold SSrecog PF03531.14 CQR57311.1 - 0.02 14.8 0.2 3.2 7.7 0.0 3.0 1 1 1 3 3 3 0 Structure-specific recognition protein (SSRP1) LRRCT PF01463.24 CQR57311.1 - 0.059 13.9 0.2 7.2e+02 1.2 0.0 5.5 8 0 0 8 8 8 0 Leucine rich repeat C-terminal domain Peripla_BP_3 PF13377.6 CQR57312.1 - 2.8e-26 92.8 0.0 4.3e-26 92.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR57312.1 - 8.6e-13 48.3 0.1 2.4e-12 46.9 0.1 1.6 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR57312.1 - 2.8e-12 46.2 0.0 6.6e-12 45.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR57312.1 - 1.5e-06 28.0 0.0 2.7e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_26 PF13443.6 CQR57312.1 - 0.0043 17.5 0.0 0.0094 16.4 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR57312.1 - 0.005 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR57312.1 - 0.011 16.1 0.0 0.019 15.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2961 PF11175.8 CQR57313.1 - 7.7e-90 300.6 3.4 7.7e-90 300.6 3.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2961) BPD_transp_1 PF00528.22 CQR57314.1 - 9e-13 48.4 20.2 9e-13 48.4 20.2 2.7 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57315.1 - 2.9e-15 56.5 22.4 2.9e-15 56.5 22.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_holin_3_5 PF16085.5 CQR57315.1 - 0.029 14.5 1.5 0.038 14.1 0.1 1.9 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III SBP_bac_1 PF01547.25 CQR57316.1 - 2.4e-28 100.0 9.6 3.8e-28 99.4 9.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57316.1 - 1.5e-25 90.6 3.5 2.1e-25 90.1 3.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Glyco_hydro_32N PF00251.20 CQR57317.1 - 1.8e-28 100.0 3.2 2.5e-28 99.5 3.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR57317.1 - 4.6e-08 33.2 0.0 7.6e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF4975 PF16346.5 CQR57317.1 - 4.7e-07 30.0 0.0 8.1e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4975) Glyco_hydro_43 PF04616.14 CQR57317.1 - 8e-05 22.1 3.8 0.00013 21.4 3.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 hSac2 PF12456.8 CQR57317.1 - 0.15 11.8 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Inositol phosphatase ROK PF00480.20 CQR57318.1 - 2.4e-70 237.4 0.0 2.8e-70 237.1 0.0 1.0 1 0 0 1 1 1 1 ROK family CttA_N PF18244.1 CQR57318.1 - 0.0052 17.2 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 Cellulose-binding protein CttA N-terminal domain Glucokinase PF02685.16 CQR57318.1 - 0.067 12.2 1.5 3.9 6.4 0.4 2.1 2 0 0 2 2 2 0 Glucokinase NAGPA PF09992.9 CQR57319.1 - 0.00043 20.5 0.3 0.00071 19.8 0.3 1.3 1 0 0 1 1 1 1 Phosphodiester glycosidase DDE_Tnp_1 PF01609.21 CQR57320.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR57320.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR57320.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR57320.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain SLH PF00395.20 CQR57322.1 - 3.1e-41 139.1 3.4 1e-13 51.0 0.1 4.2 3 0 0 3 3 3 3 S-layer homology domain Metallophos PF00149.28 CQR57322.1 - 2.2e-33 116.5 10.7 1e-18 68.6 3.9 2.4 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Pur_ac_phosph_N PF16656.5 CQR57322.1 - 9.2e-32 109.5 19.4 5.7e-18 65.3 0.3 4.7 4 1 0 4 4 4 2 Purple acid Phosphatase, N-terminal domain fn3 PF00041.21 CQR57322.1 - 1e-09 38.6 2.9 4.4e-06 26.9 0.2 4.0 4 0 0 4 4 4 2 Fibronectin type III domain PhoD_N PF16655.5 CQR57322.1 - 6e-08 33.1 0.3 0.00048 20.6 0.1 2.9 2 0 0 2 2 2 2 PhoD-like phosphatase, N-terminal domain DUF4945 PF16303.5 CQR57322.1 - 0.029 14.3 0.0 0.083 12.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4945) DUF1801 PF08818.11 CQR57323.1 - 3.3e-13 50.0 0.0 3.9e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) TetR_N PF00440.23 CQR57324.1 - 2.3e-17 62.5 0.2 3.5e-17 61.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 CQR57324.1 - 0.00099 19.1 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain HTH_Tnp_1_2 PF13022.6 CQR57324.1 - 0.0033 17.6 0.2 0.022 14.9 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix of insertion element transposase GerE PF00196.19 CQR57324.1 - 0.038 13.5 0.0 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 CQR57324.1 - 0.15 12.1 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF3533 PF12051.8 CQR57325.1 - 3e-27 95.5 6.0 3.5e-27 95.3 6.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3533) ABC2_membrane_3 PF12698.7 CQR57325.1 - 1.4e-18 67.1 20.2 3e-18 66.1 20.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR57325.1 - 2.7 7.4 27.6 0.16 11.4 19.5 2.4 2 1 0 2 2 2 0 ABC-2 type transporter SnoaL_2 PF12680.7 CQR57326.1 - 7.6e-23 81.1 0.0 4.2e-10 40.2 0.0 2.3 2 0 0 2 2 2 2 SnoaL-like domain SnoaL PF07366.12 CQR57326.1 - 3.1e-15 56.1 1.2 9.7e-06 25.4 0.2 4.1 3 1 0 3 3 3 3 SnoaL-like polyketide cyclase TetR_C_8 PF14278.6 CQR57327.1 - 3.1e-13 49.7 0.2 7.8e-13 48.4 0.2 1.6 1 0 0 1 1 1 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR57327.1 - 6.9e-11 41.8 0.0 1.5e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR57327.1 - 0.0013 18.9 0.5 0.0025 18.0 0.1 1.7 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase YceI PF04264.13 CQR57330.1 - 6.7e-43 146.8 0.0 7.5e-43 146.6 0.0 1.0 1 0 0 1 1 1 1 YceI-like domain MatE PF01554.18 CQR57331.1 - 3.3e-50 169.9 31.8 6.5e-35 120.2 12.6 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 CQR57331.1 - 4.3e-13 49.5 15.5 4.3e-13 49.5 15.5 4.5 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain RibD_C PF01872.17 CQR57332.1 - 6e-38 130.7 0.0 7e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain SBP_bac_8 PF13416.6 CQR57333.1 - 8.9e-19 68.4 0.0 1.1e-18 68.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UME PF08064.13 CQR57333.1 - 0.14 12.1 0.3 0.44 10.5 0.1 1.9 2 1 0 2 2 2 0 UME (NUC010) domain hDGE_amylase PF14701.6 CQR57334.1 - 0.00038 19.7 0.0 0.35 9.9 0.0 2.1 2 0 0 2 2 2 2 Glycogen debranching enzyme, glucanotransferase domain Alpha-amylase PF00128.24 CQR57334.1 - 0.0022 17.6 0.5 2.2 7.7 0.2 3.6 2 2 0 3 3 3 2 Alpha amylase, catalytic domain GHL6 PF14871.6 CQR57334.1 - 0.0052 16.9 0.0 0.019 15.1 0.0 1.9 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 ADH_N PF08240.12 CQR57335.1 - 3.6e-28 97.6 1.2 6.3e-28 96.8 1.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 CQR57335.1 - 1.1e-09 38.3 0.0 2e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.14 CQR57335.1 - 0.00058 19.2 0.0 0.00087 18.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Arteri_nsp7a PF16749.5 CQR57335.1 - 0.026 14.7 0.0 0.77 9.9 0.0 2.7 2 0 0 2 2 2 0 Arterivirus nonstructural protein 7 alpha Glu_dehyd_C PF16912.5 CQR57335.1 - 0.028 13.9 0.2 0.14 11.6 0.2 2.0 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 CQR57335.1 - 0.052 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Ldh_1_C PF02866.18 CQR57336.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR57337.1 - 1.3e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.16 CQR57337.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DUF4618 PF15397.6 CQR57337.1 - 0.16 11.4 2.9 0.91 8.9 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Aldedh PF00171.22 CQR57338.1 - 1.6e-166 554.4 5.6 1.8e-166 554.2 5.6 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 CQR57338.1 - 0.001 18.6 0.7 0.0043 16.5 0.7 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1487) FIST_C PF10442.9 CQR57338.1 - 0.0023 17.9 0.2 0.013 15.4 0.1 2.4 2 1 0 2 2 2 1 FIST C domain LuxC PF05893.14 CQR57338.1 - 0.042 12.9 1.3 0.4 9.7 1.3 2.1 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) CCG PF02754.16 CQR57339.1 - 9.7e-30 102.6 3.0 3.3e-14 52.8 0.5 2.2 2 0 0 2 2 2 2 Cysteine-rich domain LUD_dom PF02589.15 CQR57340.1 - 2.3e-52 177.5 0.1 3e-52 177.1 0.1 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 CQR57340.1 - 7.3e-10 39.2 0.1 1.9e-09 37.8 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 CQR57340.1 - 1.5e-07 31.4 1.7 0.0011 19.1 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 CQR57340.1 - 2.9e-06 27.3 0.7 0.0034 17.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR57340.1 - 0.00011 22.1 7.3 0.0064 16.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 CQR57340.1 - 0.00017 21.3 13.2 0.0022 17.7 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 CQR57340.1 - 0.00017 22.1 3.6 0.0026 18.2 3.9 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain DUF3390 PF11870.8 CQR57340.1 - 0.00033 21.0 1.4 0.00036 20.8 0.2 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF3390) Fer4_4 PF12800.7 CQR57340.1 - 0.00048 20.4 7.8 0.034 14.6 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 CQR57340.1 - 0.00052 20.9 8.1 0.0073 17.2 8.4 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 CQR57340.1 - 0.00061 20.3 9.3 0.0088 16.6 9.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 CQR57340.1 - 0.00071 20.3 12.5 0.088 13.8 4.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 CQR57340.1 - 0.001 19.0 12.8 0.0021 18.1 2.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 CQR57340.1 - 0.0023 18.1 2.4 0.24 11.6 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 CQR57340.1 - 0.024 14.8 9.0 0.089 12.9 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF2452 PF10504.9 CQR57340.1 - 0.14 11.6 0.5 0.82 9.1 0.1 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF2452) Fer4_20 PF14691.6 CQR57340.1 - 0.14 11.9 1.3 4.3 7.1 0.2 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Spore_III_AB PF09548.10 CQR57340.1 - 0.2 11.8 1.1 7.1 6.7 0.2 2.8 2 1 1 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) Fer4_22 PF17179.4 CQR57340.1 - 0.79 10.6 5.1 6.7 7.6 1.6 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 CQR57340.1 - 5.9 7.5 7.9 0.67 10.5 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I LUD_dom PF02589.15 CQR57341.1 - 5e-26 91.6 0.0 7.3e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 LUD domain Methyltransf_11 PF08241.12 CQR57342.1 - 6.6e-22 78.0 0.0 9.8e-22 77.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR57342.1 - 1.6e-21 76.8 0.0 2.4e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR57342.1 - 6.9e-19 68.1 0.0 8.8e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57342.1 - 1.2e-16 61.0 0.0 1.7e-16 60.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR57342.1 - 5.3e-12 45.6 0.0 6.9e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 CQR57342.1 - 1.2e-11 45.2 0.0 2.1e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 CQR57342.1 - 6.2e-08 32.4 0.0 1.3e-07 31.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 CQR57342.1 - 3.5e-06 26.6 0.0 4.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 CQR57342.1 - 7.3e-06 25.9 0.0 9.9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.15 CQR57342.1 - 0.00024 20.5 0.0 0.00075 18.9 0.0 1.7 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 CQR57342.1 - 0.00028 20.8 0.0 0.0005 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 CQR57342.1 - 0.0026 17.4 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 CQR57342.1 - 0.0027 17.3 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CheR PF01739.18 CQR57342.1 - 0.003 17.1 0.0 0.016 14.7 0.0 1.9 2 0 0 2 2 2 1 CheR methyltransferase, SAM binding domain RrnaAD PF00398.20 CQR57342.1 - 0.017 14.2 0.0 0.027 13.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TehB PF03848.14 CQR57342.1 - 0.018 14.5 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB FtsJ PF01728.19 CQR57342.1 - 0.038 14.1 0.0 0.072 13.2 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 CQR57342.1 - 0.054 13.5 0.0 0.077 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 CQR57342.1 - 0.065 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F NNMT_PNMT_TEMT PF01234.17 CQR57342.1 - 0.16 11.1 0.0 7.5 5.7 0.0 2.3 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_15 PF09445.10 CQR57342.1 - 0.17 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 CQR57342.1 - 0.17 12.9 0.0 0.37 11.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain SBP_bac_5 PF00496.22 CQR57343.1 - 2.7e-97 326.1 2.2 3.6e-97 325.7 2.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.27 CQR57344.1 - 3.5e-32 111.8 0.0 4.7e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57344.1 - 5e-08 33.1 1.1 0.00019 21.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 CQR57344.1 - 0.00014 22.3 0.0 0.00025 21.5 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR57344.1 - 0.00027 20.4 0.0 0.00046 19.7 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 CQR57344.1 - 0.00076 19.7 0.1 0.012 15.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 CQR57344.1 - 0.0018 18.4 0.0 0.007 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR57344.1 - 0.0062 16.2 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR57344.1 - 0.011 16.0 0.3 0.08 13.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR57344.1 - 0.014 15.8 0.3 0.018 15.4 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 CQR57344.1 - 0.041 13.6 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 CQR57344.1 - 0.069 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 CQR57344.1 - 0.2 10.2 0.0 7.4 5.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 CQR57345.1 - 7.9e-24 84.7 0.0 1e-23 84.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR57345.1 - 7.9e-05 23.1 0.0 0.00015 22.2 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 CQR57345.1 - 0.0053 17.0 0.6 0.026 14.8 0.6 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR57345.1 - 0.01 15.8 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 CQR57345.1 - 0.015 15.7 0.1 0.022 15.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 CQR57345.1 - 0.017 14.7 0.0 0.86 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 CQR57345.1 - 0.025 14.0 0.1 0.14 11.6 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 CQR57345.1 - 0.035 13.3 0.0 0.066 12.4 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 CQR57345.1 - 0.049 13.4 0.0 0.087 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Hpr_kinase_C PF07475.12 CQR57345.1 - 0.073 12.6 1.2 6 6.4 0.0 2.2 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain RsgA_GTPase PF03193.16 CQR57345.1 - 0.083 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 CQR57345.1 - 0.092 12.3 0.1 0.21 11.1 0.1 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_21 PF13304.6 CQR57345.1 - 0.098 12.5 1.6 0.42 10.4 0.1 2.3 1 1 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_5 PF07728.14 CQR57345.1 - 0.12 12.4 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AIG1 PF04548.16 CQR57345.1 - 0.2 10.9 0.1 0.35 10.1 0.1 1.4 1 0 0 1 1 1 0 AIG1 family BPD_transp_1 PF00528.22 CQR57346.1 - 3.2e-24 85.7 10.8 5.8e-24 84.8 10.8 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR57346.1 - 0.00024 21.0 0.0 0.00024 21.0 0.0 3.0 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 CQR57347.1 - 3.3e-43 147.6 10.3 3.3e-43 147.6 10.3 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component NopRA1 PF16201.5 CQR57350.1 - 0.028 14.0 0.9 1.5 8.4 0.1 2.5 2 0 0 2 2 2 0 Nucleolar pre-ribosomal-associated protein 1 CTK3 PF12243.8 CQR57350.1 - 0.11 12.5 1.2 1.4 8.9 0.4 2.7 3 0 0 3 3 3 0 CTD kinase subunit gamma CTK3 TPR_2 PF07719.17 CQR57350.1 - 0.33 11.2 3.6 9.1 6.7 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat ECF_trnsprt PF12822.7 CQR57351.1 - 8.5e-11 42.3 24.8 9.9e-11 42.0 24.8 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ECF-ribofla_trS PF07155.12 CQR57351.1 - 8.8e-10 38.8 20.0 1.2e-09 38.4 20.0 1.1 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.12 CQR57351.1 - 1.2 8.6 23.4 4.9 6.6 23.0 2.1 1 1 1 2 2 2 0 5TMR of 5TMR-LYT DUF1269 PF06897.12 CQR57351.1 - 6.1 7.2 9.2 14 6.1 1.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) DUF523 PF04463.12 CQR57352.1 - 0.00057 19.9 0.0 0.00078 19.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF523) ABC_tran PF00005.27 CQR57353.1 - 9.8e-32 110.3 0.0 1.3e-31 110.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR57353.1 - 1.2e-09 38.0 0.0 2.7e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR57353.1 - 3.5e-08 33.6 2.0 0.0045 16.8 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 CQR57353.1 - 0.00013 22.1 0.1 0.0023 18.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 CQR57353.1 - 0.008 16.4 0.6 0.2 11.9 0.2 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR57353.1 - 0.011 15.5 0.1 0.022 14.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 CQR57353.1 - 0.014 14.0 0.0 0.022 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR57353.1 - 0.038 13.7 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 CQR57353.1 - 0.075 13.4 0.4 0.15 12.5 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain E1-N PF14463.6 CQR57353.1 - 0.15 11.9 0.1 0.33 10.8 0.1 1.6 1 1 0 1 1 1 0 E1 N-terminal domain ABC_tran PF00005.27 CQR57354.1 - 1.6e-28 100.0 0.0 2.4e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57354.1 - 1.5e-11 44.7 0.7 5.4e-07 29.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR57354.1 - 2.1e-05 24.1 0.1 0.00026 20.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR57354.1 - 0.00011 22.5 0.0 0.0003 21.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR57354.1 - 0.00074 19.2 0.2 0.0014 18.3 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR57354.1 - 0.0088 16.4 0.1 0.016 15.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 CQR57354.1 - 0.014 15.1 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR57354.1 - 0.049 13.5 0.9 0.095 12.6 0.4 1.6 2 0 0 2 2 2 0 RsgA GTPase T2SSE PF00437.20 CQR57354.1 - 0.066 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 CQR57354.1 - 0.076 12.3 0.2 0.14 11.5 0.2 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 CQR57354.1 - 0.095 12.6 0.3 0.24 11.3 0.1 1.7 2 0 0 2 2 2 0 NACHT domain PRK PF00485.18 CQR57354.1 - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.17 CQR57354.1 - 0.12 12.4 0.3 0.5 10.4 0.1 1.9 2 1 0 2 2 2 0 Helicase HerA, central domain ATPase PF06745.13 CQR57354.1 - 0.13 11.6 0.1 5.4 6.3 0.0 2.6 3 0 0 3 3 3 0 KaiC AAA_18 PF13238.6 CQR57354.1 - 0.17 12.4 0.4 0.48 11.0 0.2 1.9 2 1 0 2 2 1 0 AAA domain Pox_A32 PF04665.12 CQR57354.1 - 0.19 11.2 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_24 PF13479.6 CQR57354.1 - 0.22 11.2 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.16 CQR57355.1 - 4.2e-35 121.3 7.4 5.3e-35 121.0 7.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein Sigma54_activat PF00158.26 CQR57356.1 - 2e-67 226.1 0.0 3.7e-67 225.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 CQR57356.1 - 3.3e-15 56.4 0.0 1.2e-14 54.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 CQR57356.1 - 3.3e-09 36.4 0.0 3.3e-09 36.4 0.0 2.1 3 0 0 3 3 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 CQR57356.1 - 6.7e-08 32.6 0.0 1.5e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 CQR57356.1 - 1.7e-07 31.7 0.0 6.9e-07 29.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PAS_4 PF08448.10 CQR57356.1 - 7.5e-07 29.4 0.0 0.0023 18.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold Mg_chelatase PF01078.21 CQR57356.1 - 1.9e-05 24.2 0.0 0.00081 18.8 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI GAF PF01590.26 CQR57356.1 - 4.2e-05 24.2 0.1 0.0001 22.9 0.1 1.7 1 0 0 1 1 1 1 GAF domain AAA_2 PF07724.14 CQR57356.1 - 0.00013 22.2 0.0 0.00031 20.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) PAS_8 PF13188.7 CQR57356.1 - 0.00057 19.8 0.0 0.0022 18.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain MAPKK1_Int PF08923.10 CQR57356.1 - 0.0018 18.1 0.2 0.12 12.2 0.1 2.4 2 0 0 2 2 2 1 Mitogen-activated protein kinase kinase 1 interacting PAS_7 PF12860.7 CQR57356.1 - 0.0023 18.1 0.0 0.0051 17.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold AAA_30 PF13604.6 CQR57356.1 - 0.0023 17.7 0.0 0.022 14.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 CQR57356.1 - 0.012 15.5 0.0 0.029 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 CQR57356.1 - 0.033 14.2 0.4 3.9 7.5 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PAS PF00989.25 CQR57356.1 - 0.039 13.9 0.0 0.11 12.5 0.0 1.9 1 0 0 1 1 1 0 PAS fold PTPS PF01242.19 CQR57356.1 - 0.067 13.2 0.5 0.18 11.8 0.5 1.7 1 0 0 1 1 1 0 6-pyruvoyl tetrahydropterin synthase AAA_16 PF13191.6 CQR57356.1 - 0.076 13.4 0.2 0.24 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ATPase PF06745.13 CQR57356.1 - 0.079 12.3 0.0 0.32 10.3 0.0 2.0 1 1 1 2 2 2 0 KaiC IstB_IS21 PF01695.17 CQR57356.1 - 0.12 12.1 0.0 0.31 10.7 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_DBD PF04552.13 CQR57357.1 - 3.8e-54 182.7 0.0 7.5e-54 181.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 CQR57357.1 - 7.7e-48 162.7 0.0 1.4e-47 161.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 CQR57357.1 - 2.2e-13 49.8 0.2 2.2e-13 49.8 0.2 2.5 3 0 0 3 3 3 1 Sigma-54 factor, Activator interacting domain (AID) HTH_21 PF13276.6 CQR57357.1 - 0.0016 18.6 0.3 0.0047 17.0 0.3 1.9 1 0 0 1 1 1 1 HTH-like domain HTH_23 PF13384.6 CQR57357.1 - 0.01 15.6 2.9 1.5 8.7 0.0 3.9 4 0 0 4 4 4 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 CQR57357.1 - 0.018 15.0 0.3 0.088 12.8 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 CQR57357.1 - 0.035 13.9 0.0 0.099 12.5 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 CQR57357.1 - 0.041 13.8 0.0 0.2 11.6 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_6 PF01418.17 CQR57357.1 - 0.071 13.1 0.0 6 6.9 0.0 3.3 4 0 0 4 4 4 0 Helix-turn-helix domain, rpiR family HTH_38 PF13936.6 CQR57357.1 - 0.079 12.7 2.6 0.52 10.1 0.1 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_12 PF08461.10 CQR57357.1 - 0.14 12.1 0.7 17 5.5 0.0 3.3 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain Pyr_redox_2 PF07992.14 CQR57358.1 - 2.8e-71 240.1 5.3 4e-71 239.6 5.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 CQR57358.1 - 4.5e-35 120.2 0.3 7.7e-35 119.5 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 CQR57358.1 - 1.7e-25 89.3 7.3 1.9e-21 76.4 0.1 3.3 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR57358.1 - 3.3e-13 49.6 1.0 4e-09 36.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 CQR57358.1 - 2.6e-10 40.0 9.2 1.8e-07 30.6 0.9 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 CQR57358.1 - 8.7e-10 37.9 10.5 0.00025 19.9 1.7 3.5 2 1 1 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 CQR57358.1 - 7.6e-08 32.1 0.8 7.6e-08 32.1 0.8 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR57358.1 - 8.7e-08 32.3 4.5 0.0014 18.8 1.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR57358.1 - 1e-05 24.8 15.6 0.00042 19.5 2.8 3.8 3 1 1 4 4 4 2 FAD binding domain DAO PF01266.24 CQR57358.1 - 1.1e-05 25.2 14.7 0.071 12.7 0.1 3.3 2 1 1 3 3 3 3 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 CQR57358.1 - 1.8e-05 24.2 11.1 0.0074 15.6 0.4 3.5 3 1 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 CQR57358.1 - 0.0021 17.7 3.8 0.12 12.0 0.2 2.4 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 CQR57358.1 - 0.0032 16.4 0.6 0.0032 16.4 0.6 2.5 3 0 0 3 3 3 1 Tryptophan halogenase NAD_binding_7 PF13241.6 CQR57358.1 - 0.0042 17.5 1.0 2.1 8.8 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.18 CQR57358.1 - 0.0081 16.1 0.1 0.0081 16.1 0.1 2.7 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 CQR57358.1 - 0.025 15.1 0.1 1.2 9.7 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain FAD_binding_3 PF01494.19 CQR57358.1 - 0.029 13.6 9.4 0.65 9.2 1.7 3.0 2 1 1 3 3 3 0 FAD binding domain Amino_oxidase PF01593.24 CQR57358.1 - 0.038 13.3 0.1 0.08 12.2 0.1 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 CQR57358.1 - 0.075 13.0 10.2 0.14 12.1 0.1 3.5 4 0 0 4 4 3 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 CQR57358.1 - 0.077 12.4 1.1 0.28 10.5 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 CQR57358.1 - 0.49 9.4 10.4 4.2 6.3 0.2 3.2 2 1 1 3 3 3 0 Lycopene cyclase protein 2-oxoacid_dh PF00198.23 CQR57359.1 - 9e-81 270.7 0.7 1.2e-80 270.3 0.7 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 CQR57359.1 - 2e-17 63.2 4.8 1.3e-10 41.4 0.1 3.2 3 0 0 3 3 3 2 e3 binding domain Biotin_lipoyl PF00364.22 CQR57359.1 - 2.9e-15 55.8 0.7 5.5e-15 55.0 0.7 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 CQR57359.1 - 0.039 13.8 0.0 0.14 12.0 0.0 2.0 1 0 0 1 1 1 0 Biotin-lipoyl like Transket_pyr PF02779.24 CQR57360.1 - 1.3e-46 158.5 0.0 2.3e-46 157.7 0.0 1.4 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 CQR57360.1 - 4.5e-41 139.6 0.1 7e-41 139.0 0.1 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 CQR57360.1 - 0.00058 20.1 0.0 0.00098 19.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 CQR57361.1 - 1.1e-89 300.3 0.0 1.4e-89 300.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 CQR57361.1 - 3.9e-06 26.7 0.0 1.1e-05 25.2 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 CQR57361.1 - 0.0032 16.5 0.0 0.0042 16.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 CQR57361.1 - 0.041 13.1 0.0 0.093 11.9 0.0 1.5 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase PTS_EIIA_1 PF00358.20 CQR57362.1 - 1.6e-43 147.5 0.6 2e-43 147.2 0.6 1.0 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Biotin_lipoyl_2 PF13533.6 CQR57362.1 - 0.0051 16.6 0.2 0.35 10.7 0.0 3.0 3 0 0 3 3 3 1 Biotin-lipoyl like HTH_6 PF01418.17 CQR57363.1 - 1.6e-24 85.7 0.8 4.7e-23 81.0 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family SIS PF01380.22 CQR57363.1 - 7.6e-18 64.6 0.3 1.2e-17 64.0 0.3 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 CQR57363.1 - 0.00026 21.0 0.5 1 9.4 0.1 2.7 1 1 1 2 2 2 2 SIS domain AcetylCoA_hydro PF02550.15 CQR57363.1 - 0.063 13.2 0.2 0.75 9.7 0.0 2.1 1 1 1 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain DUF871 PF05913.11 CQR57364.1 - 2.9e-102 342.5 0.0 3.2e-102 342.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) Glycoamylase PF10091.9 CQR57364.1 - 0.18 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Putative glucoamylase PTS_EIIC PF02378.18 CQR57365.1 - 1.2e-32 113.2 39.9 1.2e-32 113.2 39.9 1.5 2 0 0 2 2 2 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR57365.1 - 2.1e-10 39.9 0.1 4e-10 39.0 0.1 1.5 1 0 0 1 1 1 1 phosphotransferase system, EIIB He_PIG_assoc PF10632.9 CQR57365.1 - 0.091 12.5 0.2 0.42 10.3 0.0 2.2 2 0 0 2 2 2 0 He_PIG associated, NEW1 domain of bacterial glycohydrolase SIS PF01380.22 CQR57366.1 - 7.3e-08 32.3 1.0 2.6e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.6 CQR57366.1 - 1.3e-07 31.8 0.1 2.4e-07 30.8 0.1 1.5 1 0 0 1 1 1 1 SIS domain PH_16 PF17838.1 CQR57366.1 - 0.088 12.7 0.4 0.23 11.3 0.4 1.7 1 0 0 1 1 1 0 PH domain VanZ PF04892.12 CQR57367.1 - 6.1e-23 81.8 8.7 9.5e-23 81.2 8.7 1.3 1 0 0 1 1 1 1 VanZ like family Gemini_mov PF01708.16 CQR57367.1 - 0.67 9.8 5.1 1.6 8.5 0.6 2.6 2 0 0 2 2 2 0 Geminivirus putative movement protein HATPase_c PF02518.26 CQR57368.1 - 4.9e-13 49.6 0.0 8.1e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57368.1 - 1.2e-08 35.2 0.2 2.8e-07 30.8 0.0 2.4 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.25 CQR57368.1 - 1.3e-06 28.3 0.3 1.7e-05 24.7 0.0 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Syntaxin-6_N PF09177.11 CQR57368.1 - 0.07 13.7 0.1 0.16 12.5 0.1 1.6 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Stb3 PF10330.9 CQR57368.1 - 0.078 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative Sin3 binding protein Skp1_POZ PF03931.15 CQR57368.1 - 0.11 12.6 1.7 39 4.5 0.0 3.7 3 1 1 4 4 4 0 Skp1 family, tetramerisation domain CpxA_peri PF16527.5 CQR57368.1 - 0.13 12.6 0.0 32 4.9 0.0 2.6 2 0 0 2 2 2 0 Two-component sensor protein CpxA, periplasmic domain Response_reg PF00072.24 CQR57369.1 - 4e-27 94.6 0.1 5.9e-27 94.1 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR57369.1 - 2.9e-24 85.0 0.0 5.4e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HTH_11 PF08279.12 CQR57369.1 - 0.0012 18.7 0.5 0.016 15.2 0.1 2.6 3 0 0 3 3 3 1 HTH domain TetR_N PF00440.23 CQR57370.1 - 3.7e-06 26.6 0.2 6.8e-06 25.8 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MMPL PF03176.15 CQR57371.1 - 2e-80 270.2 48.1 2.7e-48 164.6 29.4 2.9 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 CQR57371.1 - 0.0004 20.3 6.5 0.0004 20.3 6.5 2.8 2 1 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 CQR57371.1 - 0.14 10.2 6.1 0.26 9.3 6.1 1.3 1 0 0 1 1 1 0 Patched family Abhydrolase_3 PF07859.13 CQR57372.1 - 7e-10 39.1 0.0 7e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR57372.1 - 0.019 14.4 0.1 0.03 13.8 0.1 1.5 1 1 0 1 1 1 0 Prolyl oligopeptidase family COesterase PF00135.28 CQR57372.1 - 0.097 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Carboxylesterase family Esterase PF00756.20 CQR57372.1 - 0.099 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative esterase HTH_AraC PF00165.23 CQR57373.1 - 9.9e-19 67.0 0.0 2.4e-09 37.0 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR57373.1 - 2.3e-18 66.2 0.0 5.3e-18 65.1 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain COesterase PF00135.28 CQR57374.1 - 5.8e-93 312.5 0.1 1.9e-91 307.5 0.1 2.2 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 CQR57374.1 - 2.9e-07 30.6 0.3 1.6e-06 28.2 0.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR57374.1 - 0.0037 16.8 0.1 0.0087 15.5 0.1 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family BPD_transp_1 PF00528.22 CQR57375.1 - 4.3e-11 42.9 23.8 1.7e-09 37.7 23.8 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Stevor PF17410.2 CQR57375.1 - 1.4 8.4 3.6 5.5 6.5 0.9 2.3 2 1 0 2 2 2 0 Subtelomeric Variable Open Reading frame BPD_transp_1 PF00528.22 CQR57376.1 - 4.3e-20 72.2 15.2 1.6e-19 70.4 9.5 2.2 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component Bac_export_2 PF01312.19 CQR57376.1 - 1 8.5 3.5 1 8.5 2.2 1.6 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family SBP_bac_8 PF13416.6 CQR57377.1 - 5.3e-22 79.0 5.1 5.3e-22 79.0 5.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR57377.1 - 7.9e-15 55.6 16.9 1.1e-14 55.2 13.9 2.5 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR57378.1 - 2.1e-24 85.6 2.5 7.2e-24 83.9 0.9 2.7 3 0 0 3 3 3 1 Histidine kinase HAMP PF00672.25 CQR57378.1 - 4.1e-06 27.1 0.0 8.4e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR57378.1 - 1.6e-05 24.8 2.6 3.3e-05 23.8 2.6 1.6 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR57378.1 - 1.9e-05 25.2 0.0 4.6e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase bPH_5 PF10882.8 CQR57378.1 - 0.036 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial PH domain HATPase_c_3 PF13589.6 CQR57378.1 - 0.076 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF948 PF06103.11 CQR57378.1 - 1.1 9.5 2.9 1.3 9.3 0.5 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Response_reg PF00072.24 CQR57379.1 - 4.9e-25 87.9 0.1 1.1e-24 86.8 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57379.1 - 2.8e-19 69.2 0.1 9.9e-19 67.4 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57379.1 - 2.3e-11 43.5 0.1 1.8e-05 24.7 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57379.1 - 4.2e-08 33.4 0.2 1.4e-07 31.8 0.1 1.9 2 0 0 2 2 2 1 GGDEF-like domain Glyco_hydro_30C PF17189.4 CQR57380.1 - 1.7e-06 28.1 10.8 2.1e-05 24.6 10.8 2.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 30 beta sandwich domain Glyco_hydro_30 PF02055.16 CQR57380.1 - 2.6e-05 23.3 0.2 4.2e-05 22.7 0.2 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 30 TIM-barrel domain Glyco_hydr_30_2 PF14587.6 CQR57380.1 - 0.008 15.8 5.3 0.012 15.2 0.7 2.5 3 0 0 3 3 3 1 O-Glycosyl hydrolase family 30 HTH_18 PF12833.7 CQR57381.1 - 5.6e-17 61.8 0.0 2.1e-16 60.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain AraC_binding PF02311.19 CQR57381.1 - 1.1e-13 51.2 0.3 2.1e-13 50.4 0.3 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_AraC PF00165.23 CQR57381.1 - 2.5e-08 33.8 0.2 0.0018 18.3 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR57381.1 - 2.9e-05 23.7 0.0 4.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 CQR57381.1 - 0.025 14.3 0.0 0.044 13.5 0.0 1.5 1 1 0 1 1 1 0 AraC-binding-like domain DUF386 PF04074.12 CQR57381.1 - 0.14 12.1 0.0 0.49 10.3 0.0 2.0 2 0 0 2 2 2 0 YhcH/YjgK/YiaL HTH_18 PF12833.7 CQR57383.1 - 8.7e-19 67.6 0.1 1.8e-18 66.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57383.1 - 2.7e-14 52.8 1.0 4.7e-07 29.8 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57383.1 - 2e-12 47.2 1.0 3.9e-12 46.2 1.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57383.1 - 8.4e-05 22.2 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain EF_assoc_2 PF08356.12 CQR57383.1 - 0.069 13.1 0.0 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 EF hand associated Cupin_3 PF05899.12 CQR57383.1 - 0.17 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) EamA PF00892.20 CQR57384.1 - 1.5e-20 73.8 36.6 2e-15 57.2 8.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 CQR57384.1 - 9 6.3 13.6 6.6 6.7 0.2 3.0 1 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Coat_F PF07875.12 CQR57385.1 - 1.1e-22 80.1 0.2 1.5e-22 79.6 0.2 1.2 1 0 0 1 1 1 1 Coat F domain DUF892 PF05974.12 CQR57386.1 - 0.0097 15.9 1.7 0.059 13.4 0.4 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF892) DED PF01335.21 CQR57386.1 - 0.029 14.7 0.4 0.033 14.5 0.4 1.0 1 0 0 1 1 1 0 Death effector domain DUF3231 PF11553.8 CQR57386.1 - 0.031 13.9 0.3 0.035 13.8 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) HTH_24 PF13412.6 CQR57386.1 - 0.062 12.9 0.1 0.093 12.3 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_C_28 PF17937.1 CQR57386.1 - 0.098 13.1 0.1 0.13 12.8 0.1 1.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain L27 PF02828.16 CQR57386.1 - 1.1 9.1 5.0 3.4 7.5 1.3 2.5 3 0 0 3 3 3 0 L27 domain ADH_N PF08240.12 CQR57387.1 - 2e-29 101.7 0.3 6e-29 100.1 0.3 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_assoc PF13823.6 CQR57387.1 - 7.8e-13 48.1 1.9 1.5e-12 47.2 1.9 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N PF00107.26 CQR57387.1 - 1.8e-12 47.4 0.7 9.9e-10 38.5 0.1 2.3 2 0 0 2 2 2 2 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 CQR57387.1 - 0.0003 20.4 0.0 0.054 13.0 0.0 2.4 2 0 0 2 2 2 2 Glucose dehydrogenase C-terminus Sacchrp_dh_NADP PF03435.18 CQR57387.1 - 0.0027 18.0 0.1 0.0043 17.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FtsJ PF01728.19 CQR57387.1 - 0.0027 17.8 0.1 0.0046 17.1 0.1 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase AlaDh_PNT_C PF01262.21 CQR57387.1 - 0.05 12.9 0.7 0.074 12.3 0.7 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain KN17_SH3 PF18131.1 CQR57387.1 - 0.066 13.3 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 KN17 SH3-like C-terminal domain Arteri_nsp7a PF16749.5 CQR57387.1 - 0.1 12.8 0.4 1.4 9.2 0.0 2.9 3 0 0 3 3 3 0 Arterivirus nonstructural protein 7 alpha Methyltransf_25 PF13649.6 CQR57387.1 - 0.11 13.2 0.0 0.23 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 CQR57387.1 - 0.12 12.3 0.2 0.2 11.6 0.2 1.3 1 0 0 1 1 1 0 Methyltransferase domain Coat_F PF07875.12 CQR57388.1 - 1.4e-17 63.6 0.0 2.2e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Coat F domain DUF3231 PF11553.8 CQR57388.1 - 0.00028 20.6 0.0 0.00057 19.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3231) V-SNARE PF05008.15 CQR57390.1 - 0.0023 18.2 2.5 0.0026 18.1 1.4 1.6 1 1 1 2 2 2 1 Vesicle transport v-SNARE protein N-terminus HrpF PF06266.12 CQR57390.1 - 0.033 14.5 4.0 0.048 14.0 4.0 1.3 1 0 0 1 1 1 0 HrpF protein ArAE_2_N PF10337.9 CQR57390.1 - 0.046 12.7 2.0 0.051 12.6 2.0 1.0 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal YlqD PF11068.8 CQR57390.1 - 0.057 13.8 2.4 0.073 13.5 2.4 1.1 1 0 0 1 1 1 0 YlqD protein DUF883 PF05957.13 CQR57390.1 - 0.1 13.2 1.6 0.18 12.4 1.6 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) ATP-synt_DE PF00401.20 CQR57390.1 - 0.19 12.0 5.1 8.6 6.7 0.0 2.6 1 1 2 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DUF2564 PF10819.8 CQR57390.1 - 0.29 11.5 7.1 1.2 9.6 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2564) POTRA_TamA_1 PF17243.2 CQR57390.1 - 0.36 11.0 2.6 2.8 8.1 0.7 2.1 1 1 1 2 2 2 0 POTRA domain TamA domain 1 RapA_C PF12137.8 CQR57390.1 - 0.38 9.7 6.2 0.47 9.4 6.2 1.0 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal dCache_2 PF08269.11 CQR57390.1 - 0.4 9.8 3.4 0.42 9.7 3.4 1.2 1 0 0 1 1 1 0 Cache domain ATP-synt_B PF00430.18 CQR57390.1 - 0.44 10.6 8.3 1.6 8.8 3.7 1.9 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF1542 PF07564.11 CQR57390.1 - 0.51 10.5 11.8 0.2 11.8 6.1 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1542) SMBP PF16785.5 CQR57390.1 - 0.61 10.3 6.8 1.1 9.5 6.8 1.4 1 1 0 1 1 1 0 Small metal-binding protein Prominin PF05478.11 CQR57390.1 - 0.88 7.4 4.8 0.93 7.4 4.8 1.0 1 0 0 1 1 1 0 Prominin OrfB_IS605 PF01385.19 CQR57391.1 - 1.2e-17 64.3 0.6 2.4e-17 63.3 0.6 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR57391.1 - 1.5e-08 34.4 0.2 1.9e-07 30.9 0.2 2.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Fer4_NifH PF00142.18 CQR57391.1 - 0.029 13.8 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Response_reg PF00072.24 CQR57392.1 - 3e-23 82.1 0.0 6.7e-23 81.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57392.1 - 6.8e-19 67.9 0.0 1.7e-18 66.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57392.1 - 2.5e-16 59.3 0.0 6.4e-08 32.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57392.1 - 0.013 15.8 0.0 0.033 14.4 0.0 1.7 1 0 0 1 1 1 0 GGDEF-like domain ANTAR PF03861.14 CQR57392.1 - 0.1 12.5 1.5 0.58 10.0 0.3 2.5 2 0 0 2 2 2 0 ANTAR domain Serpentine_r_xa PF03383.15 CQR57392.1 - 0.17 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Caenorhabditis serpentine receptor-like protein, class xa His_kinase PF06580.13 CQR57393.1 - 3.4e-21 75.3 0.7 8e-21 74.2 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR57393.1 - 2.9e-08 33.8 2.6 3e-08 33.8 1.0 1.8 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR57393.1 - 0.00086 19.8 0.0 0.002 18.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57393.1 - 0.0056 17.0 0.0 0.059 13.8 0.0 2.6 3 0 0 3 3 3 1 HAMP domain HATPase_c_2 PF13581.6 CQR57393.1 - 0.061 13.3 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MacB_PCD PF12704.7 CQR57393.1 - 0.079 13.3 0.0 0.22 11.9 0.0 1.7 2 0 0 2 2 2 0 MacB-like periplasmic core domain Cnl2_NKP2 PF09447.10 CQR57393.1 - 0.2 11.8 2.3 0.22 11.7 0.3 2.1 2 0 0 2 2 2 0 Cnl2/NKP2 family protein DUF4307 PF14155.6 CQR57393.1 - 0.26 11.1 0.2 3.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF3007 PF11460.8 CQR57393.1 - 1.5 9.1 3.9 0.98 9.7 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) BPD_transp_1 PF00528.22 CQR57394.1 - 3.4e-19 69.3 13.2 3.4e-19 69.3 13.2 2.3 1 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57395.1 - 1.6e-16 60.6 18.2 3.2e-16 59.6 18.2 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SPW PF03779.14 CQR57395.1 - 0.047 13.3 0.6 0.047 13.3 0.6 2.3 2 0 0 2 2 2 0 SPW repeat Glyco_hydro_67M PF07488.12 CQR57396.1 - 6.9e-156 518.3 0.1 9.3e-156 517.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 middle domain Glyco_hydro_67C PF07477.12 CQR57396.1 - 3.4e-93 311.3 2.7 5.3e-93 310.7 2.7 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 C-terminus Glyco_hydro_67N PF03648.14 CQR57396.1 - 1.6e-14 54.2 0.1 2.8e-14 53.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Glyco_hydro_20b PF02838.15 CQR57396.1 - 4.6e-05 24.2 1.1 6.3e-05 23.7 0.1 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 20, domain 2 Lipase_chap PF03280.14 CQR57396.1 - 0.29 11.0 2.1 0.54 10.2 2.1 1.3 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein SBP_bac_1 PF01547.25 CQR57397.1 - 2.4e-33 116.4 15.4 2.4e-33 116.4 15.4 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57397.1 - 5.4e-32 111.7 13.5 5.4e-32 111.7 13.5 1.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57397.1 - 6.5e-09 35.6 1.5 4.4e-07 29.6 1.5 2.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Lipoprotein_10 PF03202.13 CQR57397.1 - 0.02 15.3 0.1 0.055 13.9 0.1 1.7 1 0 0 1 1 1 0 Putative mycoplasma lipoprotein, C-terminal region Glyco_hydro_2_C PF02836.17 CQR57398.1 - 7.5e-80 268.3 0.1 1e-79 267.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 CQR57398.1 - 5.4e-27 94.8 0.0 1.4e-26 93.4 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 CQR57398.1 - 5.3e-09 36.7 0.0 1.6e-08 35.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 SBP_bac_1 PF01547.25 CQR57399.1 - 3.3e-30 106.1 7.6 5.6e-30 105.4 7.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57399.1 - 1.1e-20 74.6 5.1 2.3e-20 73.6 5.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR57400.1 - 5.1e-13 49.2 16.0 5.1e-13 49.2 16.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ATP1G1_PLM_MAT8 PF02038.16 CQR57400.1 - 0.006 16.0 0.0 0.006 16.0 0.0 1.9 2 0 0 2 2 2 1 ATP1G1/PLM/MAT8 family BPD_transp_1 PF00528.22 CQR57401.1 - 3.9e-18 65.9 24.5 3.9e-18 65.9 24.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component 2TM PF13239.6 CQR57401.1 - 0.1 12.9 0.4 0.1 12.9 0.4 3.8 2 1 1 3 3 3 0 2TM domain His_kinase PF06580.13 CQR57402.1 - 1.1e-18 67.3 2.4 1.3e-18 67.0 0.9 2.0 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR57402.1 - 1.2e-10 41.6 0.2 2.7e-09 37.2 0.1 3.0 3 0 0 3 3 3 1 HAMP domain HATPase_c PF02518.26 CQR57402.1 - 1.6e-08 35.0 0.1 3.3e-08 34.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 CQR57402.1 - 2.2e-08 34.2 0.8 2.4e-07 30.8 0.1 2.3 2 0 0 2 2 2 1 Cache domain HATPase_c_3 PF13589.6 CQR57402.1 - 0.00011 22.0 0.0 0.00024 20.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Psb28 PF03912.14 CQR57402.1 - 0.046 14.0 0.3 0.18 12.1 0.1 2.1 2 0 0 2 2 2 0 Psb28 protein DUF948 PF06103.11 CQR57402.1 - 0.26 11.6 3.1 16 5.8 0.0 3.5 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) MerR-DNA-bind PF09278.11 CQR57402.1 - 2 9.0 5.8 0.94 10.1 0.3 2.9 3 0 0 3 3 3 0 MerR, DNA binding HTH_18 PF12833.7 CQR57403.1 - 2.2e-21 75.9 0.1 4.5e-21 74.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Response_reg PF00072.24 CQR57403.1 - 2.9e-19 69.3 0.1 6.3e-18 65.0 0.0 2.6 2 0 0 2 2 2 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR57403.1 - 3.1e-18 65.4 0.0 1.2e-09 38.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4279 PF14106.6 CQR57403.1 - 0.023 14.9 0.0 5.4 7.2 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4279) NleF_casp_inhib PF16809.5 CQR57403.1 - 0.028 14.3 3.6 0.028 14.3 1.9 2.0 2 0 0 2 2 2 0 NleF caspase inhibitor DUF4413 PF14372.6 CQR57403.1 - 0.55 10.6 3.2 0.54 10.7 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4413) BORCS8 PF10167.9 CQR57403.1 - 1.6 8.7 6.0 0.88 9.5 0.0 3.1 3 0 0 3 3 3 0 BLOC-1-related complex sub-unit 8 Glyco_hydro_43 PF04616.14 CQR57404.1 - 1.8e-97 326.2 0.9 2.4e-97 325.7 0.9 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR57404.1 - 1.1e-60 204.8 0.3 1.6e-60 204.3 0.3 1.3 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain DUF1349 PF07081.11 CQR57404.1 - 2.5e-08 33.8 0.0 4.2e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) HTH_18 PF12833.7 CQR57405.1 - 4.4e-20 71.7 0.1 7.6e-20 71.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57405.1 - 3.3e-15 55.7 1.8 1.9e-10 40.5 0.4 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57405.1 - 9.5e-15 54.7 0.2 1.3e-14 54.2 0.2 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57405.1 - 0.0096 15.6 0.1 0.025 14.3 0.1 1.7 1 1 1 2 2 2 1 Cupin domain Melibiase_2 PF16499.5 CQR57407.1 - 1.6e-70 237.5 11.6 2.5e-70 236.9 9.8 2.2 2 1 0 2 2 2 1 Alpha galactosidase A Melibiase PF02065.18 CQR57407.1 - 8.2e-11 41.4 0.1 2.1e-10 40.1 0.0 1.6 2 0 0 2 2 2 1 Melibiase Melibiase_C PF17801.1 CQR57407.1 - 1e-10 41.5 0.0 2.3e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain Glyco_hydro_97 PF10566.9 CQR57407.1 - 0.0037 16.6 0.0 0.0053 16.1 0.0 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 Raffinose_syn PF05691.12 CQR57407.1 - 0.03 12.1 0.1 0.043 11.6 0.1 1.2 1 0 0 1 1 1 0 Raffinose synthase or seed imbibition protein Sip1 Glyco_hydro_14 PF01373.17 CQR57407.1 - 0.033 13.1 0.0 0.051 12.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 14 BSP PF04450.12 CQR57408.1 - 1.5e-43 149.0 0.0 2.5e-43 148.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase of plants and bacteria CBM_25 PF03423.13 CQR57408.1 - 1.7e-30 105.4 11.0 3.5e-30 104.4 5.6 3.6 2 1 0 2 2 2 1 Carbohydrate binding domain (family 25) F5_F8_type_C PF00754.25 CQR57408.1 - 4e-12 46.4 11.9 9.2e-10 38.7 1.6 5.1 4 1 1 5 5 5 2 F5/8 type C domain fn3 PF00041.21 CQR57408.1 - 1.2e-08 35.1 1.8 1.2e-08 35.1 1.8 3.4 3 1 0 3 3 3 1 Fibronectin type III domain CBM53 PF16760.5 CQR57408.1 - 6.1e-08 33.1 0.2 4.1e-07 30.5 0.1 2.6 2 0 0 2 2 2 1 Starch/carbohydrate-binding module (family 53) RGI_lyase PF18370.1 CQR57408.1 - 3.8e-05 23.9 1.6 3.8e-05 23.9 1.6 2.3 3 0 0 3 3 3 1 Rhamnogalacturonan I lyases beta-sheet domain fn3_2 PF16893.5 CQR57408.1 - 0.00015 21.8 0.5 0.00041 20.4 0.5 1.7 1 0 0 1 1 1 1 Fibronectin type III domain CBM_20 PF00686.19 CQR57408.1 - 0.0014 18.5 0.2 0.0014 18.5 0.2 3.7 4 0 0 4 4 4 1 Starch binding domain Toxin_R_bind_N PF07953.12 CQR57408.1 - 0.0081 15.9 6.4 0.13 11.9 0.6 2.5 2 0 0 2 2 2 2 Clostridium neurotoxin, N-terminal receptor binding DUF4959 PF16323.5 CQR57408.1 - 0.1 12.9 0.7 0.28 11.5 0.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4959) ChitinaseA_N PF08329.10 CQR57408.1 - 0.18 11.4 1.9 0.25 11.0 0.5 1.9 2 0 0 2 2 2 0 Chitinase A, N-terminal domain Y_Y_Y PF07495.13 CQR57408.1 - 2 8.4 12.8 0.056 13.4 0.9 3.8 3 0 0 3 3 3 0 Y_Y_Y domain HTH_18 PF12833.7 CQR57409.1 - 6.4e-11 42.4 0.1 8e-11 42.1 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57409.1 - 4.7e-07 29.7 0.0 7.3e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family MOZART2 PF12926.7 CQR57409.1 - 0.15 11.7 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated BPD_transp_1 PF00528.22 CQR57410.1 - 1.1e-17 64.4 21.1 1.1e-17 64.4 21.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57411.1 - 4.2e-12 46.2 18.6 4.2e-12 46.2 18.6 2.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component hSac2 PF12456.8 CQR57411.1 - 0.03 14.0 0.1 0.051 13.3 0.1 1.3 1 0 0 1 1 1 0 Inositol phosphatase Hormone_1 PF00103.20 CQR57412.1 - 0.63 9.8 4.0 0.44 10.3 0.5 2.4 2 1 1 3 3 3 0 Somatotropin hormone family Esterase PF00756.20 CQR57413.1 - 4.4e-26 92.0 0.0 5.6e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 Putative esterase Abhydrolase_6 PF12697.7 CQR57413.1 - 0.033 14.8 0.0 0.037 14.6 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR57413.1 - 0.22 10.7 0.0 0.34 10.1 0.0 1.2 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Glyco_hydro_43 PF04616.14 CQR57414.1 - 9.6e-30 103.9 2.7 5e-29 101.5 2.7 2.1 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hydro_43 PF04616.14 CQR57415.1 - 1e-24 87.4 0.3 1.6e-24 86.7 0.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 Big_4 PF07532.11 CQR57415.1 - 6e-05 22.7 0.1 0.0002 21.0 0.1 1.9 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 4) Peptidase_S9_N PF02897.15 CQR57415.1 - 0.021 13.6 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain HTH_18 PF12833.7 CQR57416.1 - 7.4e-17 61.4 0.0 1.9e-16 60.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57416.1 - 9.5e-17 60.6 0.0 1.3e-09 37.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family MttA_Hcf106 PF02416.16 CQR57416.1 - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 mttA/Hcf106 family Rubredoxin_2 PF18073.1 CQR57417.1 - 3.6 7.4 12.5 16 5.3 0.2 4.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain MTES_1575 PF18741.1 CQR57418.1 - 0.00019 21.5 0.0 0.00033 20.8 0.0 1.5 1 0 0 1 1 1 1 REase_MTES_1575 DUF559 PF04480.12 CQR57418.1 - 0.022 14.6 0.0 0.041 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF559) Glyco_hydro_10 PF00331.20 CQR57420.1 - 1.2e-68 231.6 1.0 1.5e-68 231.3 1.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 GH43_C2 PF17851.1 CQR57421.1 - 2.8e-42 144.8 0.6 3e-42 144.6 0.6 1.0 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain Kelch_3 PF13415.6 CQR57421.1 - 0.46 10.8 2.7 1.4 9.3 0.2 2.4 2 0 0 2 2 2 0 Galactose oxidase, central domain Glyco_hydro_43 PF04616.14 CQR57422.1 - 4.8e-33 114.7 3.5 7.2e-33 114.1 3.5 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 CBM_6 PF03422.15 CQR57423.1 - 1.6e-48 164.2 22.8 1.4e-42 144.9 6.7 3.2 3 0 0 3 3 3 2 Carbohydrate binding module (family 6) Glyco_hydro_43 PF04616.14 CQR57423.1 - 4.5e-30 105.0 1.6 6.9e-30 104.3 1.6 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 DUF5010_C PF18099.1 CQR57423.1 - 4.6e-12 46.1 3.8 5.2e-11 42.7 0.8 2.6 2 0 0 2 2 2 1 DUF5010 C-terminal domain CBM60 PF16841.5 CQR57423.1 - 0.082 13.3 1.8 0.44 11.0 0.2 2.5 2 1 0 2 2 2 0 Ca-dependent carbohydrate-binding module xylan-binding Peripla_BP_4 PF13407.6 CQR57424.1 - 1.5e-40 139.4 0.0 1.8e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR57424.1 - 5.5e-15 55.5 0.0 7e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR57424.1 - 1.8e-10 41.4 0.1 3.4e-10 40.5 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein-like domain BPD_transp_2 PF02653.16 CQR57425.1 - 1.1e-44 152.7 44.6 1.1e-44 152.7 44.6 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component PnpCD_PnpD_N PF18191.1 CQR57425.1 - 0.2 11.2 0.9 6.6 6.3 0.1 2.2 2 0 0 2 2 2 0 Hydroquinone 1,2-dioxygenase large subunit N-terminal BPD_transp_2 PF02653.16 CQR57426.1 - 4.1e-38 131.1 43.2 5.2e-38 130.7 43.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 CQR57427.1 - 1.3e-49 168.2 0.0 1.5e-28 100.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR57427.1 - 2.1e-11 44.2 1.0 0.00044 20.1 0.2 3.2 3 0 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR57427.1 - 6.6e-06 25.7 0.2 0.00022 20.8 0.3 2.5 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR57427.1 - 0.0015 18.3 1.2 0.011 15.4 0.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 CQR57427.1 - 0.0021 18.4 2.9 0.15 12.3 0.8 3.6 2 2 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR57427.1 - 0.0026 17.7 0.2 0.0085 16.0 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 CQR57427.1 - 0.004 16.9 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 CQR57427.1 - 0.0054 15.4 0.0 0.77 8.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 CQR57427.1 - 0.013 15.7 0.3 0.36 11.1 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit TsaE PF02367.17 CQR57427.1 - 0.02 14.9 0.2 1.9 8.5 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 CQR57427.1 - 0.03 14.8 0.0 0.086 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR57427.1 - 0.053 13.6 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 CQR57427.1 - 0.12 12.7 3.2 7.8 6.9 1.0 3.6 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 CQR57427.1 - 0.18 11.4 0.1 0.81 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 CQR57427.1 - 0.3 11.6 1.2 51 4.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain Peripla_BP_4 PF13407.6 CQR57428.1 - 8.7e-51 173.0 8.6 1.2e-50 172.5 8.6 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR57428.1 - 8.6e-16 58.2 1.1 1.1e-15 57.8 1.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR57428.1 - 4.5e-08 33.6 0.2 1.3e-07 32.1 0.0 1.9 2 0 0 2 2 2 1 Periplasmic binding protein-like domain ABC_sub_bind PF04392.12 CQR57428.1 - 1.4e-05 24.5 1.0 0.00025 20.4 0.1 2.2 2 0 0 2 2 2 1 ABC transporter substrate binding protein Ribosomal_L36e PF01158.18 CQR57428.1 - 0.068 13.4 0.1 0.43 10.9 0.0 2.3 3 0 0 3 3 3 0 Ribosomal protein L36e Glyco_trans_1_4 PF13692.6 CQR57428.1 - 0.093 13.2 0.0 0.36 11.3 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferases group 1 Helicase_C PF00271.31 CQR57428.1 - 0.1 13.0 0.0 0.55 10.6 0.0 2.0 2 0 0 2 2 2 0 Helicase conserved C-terminal domain Glyco_trans_4_5 PF16994.5 CQR57429.1 - 0.068 12.8 0.0 0.068 12.8 0.0 1.0 1 0 0 1 1 1 0 Glycosyl-transferase family 4 His_kinase PF06580.13 CQR57430.1 - 1.2e-24 86.4 0.1 2.8e-24 85.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR57430.1 - 3.6e-11 43.6 0.1 7.7e-11 42.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57430.1 - 5.2e-11 42.7 0.6 1.8e-09 37.8 0.0 2.5 2 0 0 2 2 2 1 HAMP domain Response_reg PF00072.24 CQR57431.1 - 6.6e-27 93.9 0.1 2.6e-26 92.0 0.0 2.1 3 0 0 3 3 3 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57431.1 - 3.6e-21 75.2 0.1 7.4e-21 74.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57431.1 - 1.8e-20 72.5 0.6 9.1e-10 38.4 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57431.1 - 4e-10 40.0 0.5 2.5e-09 37.4 0.1 2.5 2 1 0 2 2 2 1 GGDEF-like domain TIP120 PF08623.10 CQR57431.1 - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 TATA-binding protein interacting (TIP20) HBB PF06777.11 CQR57431.1 - 0.057 13.1 0.1 1.3 8.6 0.0 2.7 3 0 0 3 3 3 0 Helical and beta-bridge domain Peripla_BP_4 PF13407.6 CQR57432.1 - 3.5e-42 144.8 0.3 4.1e-42 144.5 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 CQR57432.1 - 1.2e-08 34.8 0.2 1.6e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_sub_bind PF04392.12 CQR57432.1 - 0.0012 18.1 0.1 0.0017 17.6 0.1 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_6 PF13458.6 CQR57432.1 - 0.0025 17.6 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein BNR_6 PF15899.5 CQR57433.1 - 0.043 13.9 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 BNR-Asp box repeat Mor PF08765.11 CQR57434.1 - 0.082 12.9 0.0 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 Mor transcription activator family Glyco_hydro_31 PF01055.26 CQR57435.1 - 4.5e-123 411.7 1.4 6.2e-123 411.3 1.4 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 CQR57435.1 - 0.00017 21.8 2.7 0.00058 20.1 0.2 3.0 2 1 0 2 2 2 1 Galactose mutarotase-like DUF4968 PF16338.5 CQR57435.1 - 0.091 13.1 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4968) Tox-URI2 PF15653.6 CQR57435.1 - 0.17 12.2 0.0 0.46 10.8 0.0 1.7 1 0 0 1 1 1 0 URI fold toxin 2 HTH_18 PF12833.7 CQR57436.1 - 2.5e-19 69.3 0.2 4.2e-19 68.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57436.1 - 3.5e-19 68.4 0.2 6.2e-09 35.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57436.1 - 6.1e-11 42.4 0.2 9.3e-11 41.8 0.2 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57436.1 - 5.9e-06 25.9 0.1 1.1e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 CQR57436.1 - 4e-05 23.3 0.0 6.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Cupin GH43_C2 PF17851.1 CQR57437.1 - 8e-42 143.3 0.0 1.1e-41 142.8 0.0 1.2 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain Glyco_hydro_43 PF04616.14 CQR57437.1 - 3.4e-37 128.3 0.1 5.2e-37 127.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hydro_43 PF04616.14 CQR57438.1 - 1.7e-36 126.0 1.7 2.2e-36 125.7 1.7 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 CBM_6 PF03422.15 CQR57438.1 - 1.6e-26 93.0 0.5 4.7e-26 91.5 0.0 2.0 2 1 0 2 2 2 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 CQR57438.1 - 0.00014 21.9 0.0 0.00031 20.9 0.0 1.5 1 0 0 1 1 1 1 DUF5010 C-terminal domain Glyco_hydro_10 PF00331.20 CQR57439.1 - 1.4e-105 353.0 0.0 1.6e-105 352.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 AP_endonuc_2 PF01261.24 CQR57439.1 - 0.032 13.7 0.0 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Response_reg PF00072.24 CQR57440.1 - 6.7e-22 77.8 0.0 2e-21 76.3 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57440.1 - 1.6e-15 57.1 0.1 3.8e-15 55.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57440.1 - 7.2e-09 35.5 0.1 0.00028 20.9 0.0 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57440.1 - 5.2e-06 26.7 0.3 1.9e-05 24.9 0.2 2.0 1 1 0 1 1 1 1 GGDEF-like domain His_kinase PF06580.13 CQR57441.1 - 2.5e-22 79.0 1.6 8.3e-22 77.3 1.6 2.0 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR57441.1 - 2.1e-07 31.4 0.1 4.3e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57441.1 - 0.0036 17.7 0.0 0.0077 16.6 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR57441.1 - 0.019 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MapZ_C2 PF18708.1 CQR57441.1 - 0.13 12.6 1.1 0.29 11.5 1.1 1.6 1 0 0 1 1 1 0 MapZ extracellular C-terminal domain 2 Response_reg PF00072.24 CQR57442.1 - 1.5e-25 89.5 0.0 3.1e-25 88.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57442.1 - 6.2e-20 71.3 0.0 1.5e-19 70.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57442.1 - 1.4e-13 50.5 0.1 4.6e-08 32.9 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57442.1 - 2e-06 28.1 0.0 5.9e-06 26.5 0.0 1.8 1 0 0 1 1 1 1 GGDEF-like domain BPD_transp_1 PF00528.22 CQR57443.1 - 9.9e-09 35.2 26.7 3.9e-08 33.3 26.7 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57444.1 - 4.8e-14 52.5 12.0 4.8e-14 52.5 12.0 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR57445.1 - 5e-15 56.1 3.8 5e-15 56.1 3.8 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein FMP23 PF17315.2 CQR57445.1 - 0.82 9.8 2.9 4 7.6 0.4 2.4 2 0 0 2 2 2 0 Found in mitochondrial proteome LPAM_2 PF13627.6 CQR57445.1 - 5.4 7.0 6.5 11 6.1 6.5 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site OGFr_III PF04680.13 CQR57446.1 - 0.0053 17.3 2.3 1e+02 3.8 0.0 5.4 6 0 0 6 6 6 2 Opioid growth factor receptor repeat Glyco_hyd_65N_2 PF14498.6 CQR57447.1 - 4.5e-74 249.3 0.0 6e-74 248.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65N PF03636.15 CQR57447.1 - 0.05 13.2 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain 3-alpha PF03475.14 CQR57447.1 - 2.2 8.2 4.7 1.1 9.2 0.2 2.6 2 0 0 2 2 2 0 3-alpha domain ADH_N PF08240.12 CQR57448.1 - 3e-32 110.7 0.2 6.5e-32 109.7 0.2 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 CQR57448.1 - 3.5e-19 69.1 0.1 5.3e-19 68.5 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 CQR57448.1 - 0.00087 18.6 0.4 0.0013 18.1 0.4 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 CQR57448.1 - 0.006 16.1 0.2 0.029 13.9 0.2 1.9 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus 3HCDH_N PF02737.18 CQR57448.1 - 0.0088 15.9 0.1 0.013 15.3 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 CQR57448.1 - 0.015 14.7 0.2 0.025 13.9 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 CQR57448.1 - 0.024 14.2 0.2 0.041 13.4 0.2 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 CQR57448.1 - 0.1 11.8 0.1 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Aldo_ket_red PF00248.21 CQR57449.1 - 5e-55 186.8 0.0 5.7e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Amidohydro_2 PF04909.14 CQR57450.1 - 5.5e-40 138.0 0.2 6.2e-40 137.8 0.2 1.0 1 0 0 1 1 1 1 Amidohydrolase HTH_18 PF12833.7 CQR57451.1 - 1.2e-23 83.1 0.5 2.5e-23 82.2 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57451.1 - 1.1e-22 79.6 0.1 4.9e-13 48.8 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57451.1 - 4.2e-16 59.1 0.9 7.1e-16 58.4 0.9 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57451.1 - 8.5e-10 38.2 0.2 1.9e-09 37.1 0.2 1.5 1 0 0 1 1 1 1 Cupin domain ARD PF03079.14 CQR57451.1 - 0.053 13.7 0.2 0.053 13.7 0.2 1.6 2 0 0 2 2 2 0 ARD/ARD' family Glyco_hydro_31 PF01055.26 CQR57452.1 - 2.5e-124 415.9 5.7 3.1e-124 415.5 5.7 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 DUF5110 PF17137.4 CQR57452.1 - 4.5e-17 62.1 0.2 1.6e-16 60.3 0.2 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5110) DUF4968 PF16338.5 CQR57452.1 - 2.7e-15 56.4 0.0 6.3e-15 55.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4968) Gal_mutarotas_2 PF13802.6 CQR57452.1 - 0.00056 20.2 0.5 0.003 17.9 0.5 2.3 1 1 0 1 1 1 1 Galactose mutarotase-like HTH_18 PF12833.7 CQR57453.1 - 4.5e-21 74.9 0.4 8.4e-21 74.0 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57453.1 - 8.2e-15 54.5 0.1 6.2e-07 29.4 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57453.1 - 8.8e-14 51.6 1.7 8.8e-14 51.6 1.7 1.9 2 1 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57453.1 - 4e-08 32.8 0.5 7.8e-08 31.9 0.5 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 CQR57453.1 - 0.0028 17.4 0.1 0.0046 16.7 0.1 1.3 1 0 0 1 1 1 1 AraC-binding-like domain SAM_DrpA PF18255.1 CQR57453.1 - 0.028 14.6 0.0 0.089 13.1 0.0 1.8 1 0 0 1 1 1 0 DNA processing protein A sterile alpha motif domain DUF3038 PF11237.8 CQR57453.1 - 0.045 13.8 0.9 0.073 13.1 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3038) Glyco_hydro_43 PF04616.14 CQR57454.1 - 6.5e-26 91.3 0.1 8.7e-26 90.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 CBM_6 PF03422.15 CQR57454.1 - 0.0017 18.7 0.1 0.0044 17.3 0.1 1.7 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) Glyco_hydro_8 PF01270.17 CQR57455.1 - 3.4e-26 91.9 0.0 4.4e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 8 Response_reg PF00072.24 CQR57456.1 - 4.4e-21 75.2 0.1 7e-21 74.5 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57456.1 - 3.4e-19 68.9 0.0 6.3e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57456.1 - 2.8e-15 55.9 0.1 1.3e-09 37.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.14 CQR57456.1 - 0.015 15.5 0.1 0.027 14.7 0.1 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like FokI_C PF02980.16 CQR57456.1 - 0.1 12.6 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease FokI, catalytic domain Rrf2 PF02082.20 CQR57456.1 - 0.18 12.1 0.0 0.64 10.4 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator His_kinase PF06580.13 CQR57457.1 - 9.2e-22 77.2 0.3 2.7e-21 75.7 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR57457.1 - 2e-10 41.2 0.1 3.8e-10 40.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR57457.1 - 8.8e-05 22.4 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57457.1 - 0.0006 20.1 0.1 0.0021 18.4 0.1 2.0 1 0 0 1 1 1 1 HAMP domain Yip1 PF04893.17 CQR57457.1 - 0.047 13.4 0.0 6.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Yip1 domain SBP_bac_1 PF01547.25 CQR57458.1 - 6.4e-10 39.5 10.2 1.7e-09 38.1 10.2 1.8 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR57458.1 - 0.13 12.9 3.6 0.39 11.4 3.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3502) BPD_transp_1 PF00528.22 CQR57459.1 - 7.3e-07 29.1 28.0 5.6e-06 26.2 28.0 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.20 CQR57459.1 - 0.012 15.1 0.7 0.012 15.1 0.7 3.2 3 1 1 4 4 4 0 E1-E2 ATPase PufQ PF05398.11 CQR57459.1 - 0.46 10.6 2.6 1.5 9.0 0.0 2.5 2 0 0 2 2 2 0 PufQ cytochrome subunit VIT1 PF01988.19 CQR57459.1 - 5.8 6.7 9.2 4.1 7.2 2.5 2.4 1 1 0 2 2 2 0 VIT family BPD_transp_1 PF00528.22 CQR57460.1 - 4.2e-16 59.2 12.4 4.2e-16 59.2 12.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Cytochrom_B558a PF05038.13 CQR57460.1 - 0.00096 18.8 0.1 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 Cytochrome Cytochrome b558 alpha-subunit Phage_holin_3_5 PF16085.5 CQR57460.1 - 0.52 10.5 4.5 0.18 12.0 1.4 1.8 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III Methyltransf_23 PF13489.6 CQR57461.1 - 0.00023 21.0 0.0 0.00032 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR57461.1 - 0.00029 21.4 0.0 0.00048 20.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR57461.1 - 0.023 15.4 0.0 0.037 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Phosphodiest PF01663.22 CQR57461.1 - 0.09 12.3 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Methyltransf_25 PF13649.6 CQR57461.1 - 0.18 12.5 0.0 0.28 11.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MFS_1 PF07690.16 CQR57462.1 - 7.6e-47 159.9 50.6 4e-30 104.9 29.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR57462.1 - 1.1e-13 50.9 39.7 1.7e-12 47.0 15.4 3.0 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR57462.1 - 5.9e-09 35.3 37.4 5.9e-05 22.1 17.3 2.1 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 CQR57462.1 - 0.00075 18.0 19.1 0.00097 17.6 19.1 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CQR57462.1 - 0.0018 16.9 11.5 0.0018 16.9 11.5 2.6 2 1 0 2 2 2 2 MFS/sugar transport protein Lactamase_B PF00753.27 CQR57463.1 - 7.8e-13 48.9 0.9 2e-12 47.6 0.9 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily MoaF_C PF17409.2 CQR57463.1 - 0.11 12.1 0.6 17 5.1 0.0 2.8 3 0 0 3 3 3 0 MoaF C-terminal domain HTH_3 PF01381.22 CQR57464.1 - 1.7e-16 60.0 0.1 7.7e-16 57.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 CQR57464.1 - 1.1e-13 51.0 0.0 3e-13 49.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CQR57464.1 - 4e-10 39.9 0.0 6.3e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR57464.1 - 0.0001 22.7 0.0 0.00037 20.9 0.0 2.0 2 0 0 2 2 1 1 Cro/C1-type HTH DNA-binding domain TPR_1 PF00515.28 CQR57464.1 - 0.00016 21.4 0.6 0.004 16.9 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 CQR57464.1 - 0.00024 21.0 0.1 0.0081 16.3 0.0 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat MqsA_antitoxin PF15731.5 CQR57464.1 - 0.0003 20.9 0.0 0.00079 19.5 0.0 1.7 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA YdaS_antitoxin PF15943.5 CQR57464.1 - 0.00065 19.5 0.0 0.0046 16.8 0.0 2.4 3 0 0 3 3 3 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TPR_2 PF07719.17 CQR57464.1 - 0.0017 18.3 0.1 0.071 13.3 0.0 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 CQR57464.1 - 0.0025 17.5 0.0 0.0062 16.2 0.0 1.7 1 0 0 1 1 1 1 TPR repeat P22_Cro PF14549.6 CQR57464.1 - 0.0059 16.4 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro Ribosomal_L38e PF01781.18 CQR57464.1 - 0.0096 16.0 0.2 0.023 14.8 0.2 1.7 1 0 0 1 1 1 1 Ribosomal L38e protein family Phage_CII PF05269.11 CQR57464.1 - 0.012 15.8 0.0 0.034 14.4 0.0 1.8 1 0 0 1 1 1 0 Bacteriophage CII protein TPR_19 PF14559.6 CQR57464.1 - 0.015 15.8 0.1 5.1 7.7 0.1 2.4 1 1 0 2 2 2 0 Tetratricopeptide repeat Sigma70_r4 PF04545.16 CQR57464.1 - 0.021 14.3 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 CQR57464.1 - 0.029 14.5 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR57464.1 - 0.032 14.2 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 CQR57464.1 - 0.052 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 CQR57464.1 - 0.068 13.1 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 CQR57464.1 - 0.087 12.8 0.0 0.28 11.2 0.0 1.8 1 0 0 1 1 1 0 HTH domain TOM20_plant PF06552.12 CQR57464.1 - 0.091 12.5 0.1 1.1 9.0 0.0 2.1 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 DUF1323 PF07037.11 CQR57464.1 - 0.11 12.9 0.0 0.3 11.5 0.0 1.8 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) TPR_17 PF13431.6 CQR57464.1 - 0.11 13.0 0.4 0.53 10.8 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat HTH_Tnp_4 PF13613.6 CQR57464.1 - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease TPR_6 PF13174.6 CQR57464.1 - 0.17 12.6 0.0 1.4 9.7 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat MarR_2 PF12802.7 CQR57464.1 - 0.19 11.6 0.0 0.49 10.3 0.0 1.7 2 0 0 2 2 1 0 MarR family MFS_2 PF13347.6 CQR57465.1 - 5.4e-96 321.8 29.7 6e-96 321.6 29.7 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 CQR57465.1 - 6.2e-16 58.3 54.5 4.1e-12 45.7 32.7 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily H_PPase PF03030.16 CQR57465.1 - 0.036 12.7 10.4 0.043 12.4 0.3 2.2 2 0 0 2 2 2 0 Inorganic H+ pyrophosphatase Kinocilin PF15033.6 CQR57465.1 - 0.14 11.9 8.3 0.072 12.7 2.0 3.0 3 0 0 3 3 3 0 Kinocilin protein XhlA PF10779.9 CQR57465.1 - 0.32 11.2 0.0 0.32 11.2 0.0 2.5 3 0 0 3 3 3 0 Haemolysin XhlA Glyco_hydro_3_C PF01915.22 CQR57466.1 - 1.1e-44 152.8 0.0 1.7e-44 152.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 CQR57466.1 - 1.9e-39 135.9 0.0 3.2e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 CQR57466.1 - 1.4e-20 73.1 0.0 3.2e-20 72.0 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain Glyco_hydro_39 PF01229.17 CQR57467.1 - 6.7e-66 222.9 5.0 1.3e-65 221.8 5.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 39 HTH_18 PF12833.7 CQR57467.1 - 3.1e-15 56.2 0.1 2.1e-14 53.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57467.1 - 3.7e-12 46.0 0.4 3.8e-07 30.1 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR57467.1 - 0.00027 20.6 0.2 0.00053 19.6 0.2 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 CQR57467.1 - 0.00052 19.9 0.7 0.0021 18.0 0.4 2.1 2 0 0 2 2 2 1 AraC-like ligand binding domain GFO_IDH_MocA_C PF02894.17 CQR57468.1 - 6.4e-23 81.0 0.1 1.3e-22 80.0 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.22 CQR57468.1 - 1e-15 58.6 0.0 2e-15 57.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Hydrolase_6 PF13344.6 CQR57468.1 - 0.067 13.3 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_hydro_43 PF04616.14 CQR57469.1 - 1.5e-08 34.3 0.1 2.6e-07 30.3 0.1 2.0 1 1 1 2 2 2 2 Glycosyl hydrolases family 43 BPD_transp_1 PF00528.22 CQR57470.1 - 6.3e-21 75.0 13.4 6.3e-21 75.0 13.4 2.2 1 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57471.1 - 1.3e-16 60.9 19.6 1.3e-16 60.9 19.6 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR57472.1 - 1.7e-24 87.1 3.3 2.4e-24 86.6 3.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR57472.1 - 2e-22 80.6 2.9 2.8e-22 80.1 2.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57472.1 - 0.008 15.6 0.2 0.11 11.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR57473.1 - 2.7e-24 85.5 0.0 9.4e-24 83.7 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57473.1 - 2e-17 63.2 0.0 1.1e-16 60.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57473.1 - 2.7e-13 49.6 0.0 5.8e-07 29.4 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57473.1 - 3.1e-11 43.6 0.0 1.6e-10 41.3 0.0 2.2 3 0 0 3 3 3 1 GGDEF-like domain KIP1 PF07765.12 CQR57473.1 - 0.27 11.4 1.2 24 5.1 0.1 2.7 2 0 0 2 2 2 0 KIP1-like protein His_kinase PF06580.13 CQR57474.1 - 1e-24 86.7 1.5 3.1e-24 85.1 1.5 1.9 1 0 0 1 1 1 1 Histidine kinase HAMP PF00672.25 CQR57474.1 - 1.3e-10 41.5 0.0 3.6e-10 40.1 0.0 1.8 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 CQR57474.1 - 1.6e-09 37.9 4.5 2.8e-09 37.1 4.5 1.3 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR57474.1 - 0.00044 20.7 0.1 0.00086 19.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CrgA PF06781.12 CQR57474.1 - 0.0097 16.0 0.4 0.66 10.1 0.1 2.4 2 0 0 2 2 2 1 Cell division protein CrgA PspB PF06667.12 CQR57474.1 - 0.032 14.3 0.3 0.032 14.3 0.3 2.7 3 0 0 3 3 3 0 Phage shock protein B DUF4293 PF14126.6 CQR57474.1 - 0.036 14.3 1.5 0.37 11.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4293) DUF1825 PF08855.10 CQR57474.1 - 0.047 13.6 0.6 0.14 12.1 0.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) DUF4407 PF14362.6 CQR57474.1 - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HATPase_c_2 PF13581.6 CQR57474.1 - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Sigma_reg_N PF13800.6 CQR57474.1 - 0.52 10.6 2.6 29 5.1 0.1 2.7 2 0 0 2 2 2 0 Sigma factor regulator N-terminal HTH_18 PF12833.7 CQR57475.1 - 1.7e-08 34.6 0.0 2.1e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57475.1 - 0.00061 19.8 0.0 0.00089 19.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family Metallophos PF00149.28 CQR57476.1 - 0.023 15.2 1.2 0.073 13.6 1.2 1.9 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase TPR_19 PF14559.6 CQR57476.1 - 0.097 13.2 3.3 8.1 7.0 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat CtsR_C PF17727.1 CQR57476.1 - 0.37 10.9 2.5 0.58 10.3 0.0 2.7 3 0 0 3 3 3 0 CtsR C-terminal dimerization domain Mrr_cat PF04471.12 CQR57477.1 - 5.9e-21 74.6 0.1 1.2e-20 73.7 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 CQR57477.1 - 3.4e-05 23.8 0.8 4.9e-05 23.2 0.3 1.6 1 1 1 2 2 2 1 Restriction endonuclease MTES_1575 PF18741.1 CQR57477.1 - 0.0061 16.7 0.1 0.01 16.0 0.1 1.4 1 0 0 1 1 1 1 REase_MTES_1575 DUF4834 PF16118.5 CQR57477.1 - 0.12 13.3 0.1 0.21 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) HTH_26 PF13443.6 CQR57478.1 - 1.4e-19 70.2 0.4 1.6e-19 70.1 0.4 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR57478.1 - 0.0063 16.5 0.0 0.0074 16.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix CheR_N PF03705.15 CQR57478.1 - 0.11 12.3 0.2 1.5 8.6 0.0 2.1 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain Peptidase_M15_4 PF13539.6 CQR57481.1 - 6.5e-18 65.0 0.7 1e-17 64.4 0.7 1.3 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Cu_amine_oxidN1 PF07833.11 CQR57481.1 - 6.4e-09 36.2 0.1 1.4e-08 35.1 0.1 1.6 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain VanY PF02557.17 CQR57481.1 - 1.1e-08 35.0 0.0 1.5e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Ribosomal_L5 PF00281.19 CQR57482.1 - 0.077 13.4 0.1 0.09 13.1 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L5 YolD PF08863.10 CQR57483.1 - 1.8e-17 63.2 0.2 2e-17 63.0 0.2 1.0 1 0 0 1 1 1 1 YolD-like protein FTCD_C PF04961.12 CQR57484.1 - 0.0036 17.1 1.5 0.0061 16.3 1.4 1.5 1 1 0 1 1 1 1 Formiminotransferase-cyclodeaminase ApoLp-III PF07464.11 CQR57484.1 - 0.047 13.8 4.3 0.16 12.1 0.7 2.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF2408 PF10303.9 CQR57484.1 - 0.068 13.7 1.2 0.1 13.2 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Syntaxin_2 PF14523.6 CQR57484.1 - 0.16 12.3 1.4 0.32 11.4 1.4 1.5 1 0 0 1 1 1 0 Syntaxin-like protein DUF4085 PF13315.6 CQR57484.1 - 0.34 10.5 4.5 0.39 10.3 1.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4085) Med11 PF10280.9 CQR57484.1 - 0.41 11.1 8.1 0.75 10.2 4.3 2.3 1 1 1 2 2 2 0 Mediator complex protein bPH_2 PF03703.14 CQR57485.1 - 2.1e-13 50.3 0.1 3.1e-13 49.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain zinc_ribbon_2 PF13240.6 CQR57485.1 - 1.3e-06 27.9 6.3 2.1e-06 27.2 6.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 CQR57485.1 - 7.7e-05 22.6 1.1 0.00011 22.1 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 CQR57485.1 - 0.039 13.4 3.7 0.069 12.6 3.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 CQR57485.1 - 0.32 11.8 3.4 0.48 11.2 3.4 1.3 1 0 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 CQR57485.1 - 0.5 10.3 4.6 5.9 6.9 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 CQR57485.1 - 0.83 9.4 5.8 2.3 8.0 1.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Glyco_hydro_26 PF02156.15 CQR57486.1 - 2.4e-59 201.3 6.1 5.4e-59 200.2 3.1 2.0 2 0 0 2 2 2 1 Glycosyl hydrolase family 26 PA14 PF07691.12 CQR57486.1 - 2e-29 102.3 0.0 3.6e-29 101.5 0.0 1.4 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 CQR57486.1 - 0.16 12.4 1.9 0.56 10.7 0.0 2.9 2 2 0 2 2 2 0 GLEYA domain DNase_NucA_NucB PF14040.6 CQR57487.1 - 7.1e-13 48.9 0.0 9.3e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Deoxyribonuclease NucA/NucB YjcZ_2 PF09680.10 CQR57489.1 - 0.011 15.3 6.5 0.011 15.3 6.5 1.7 2 0 0 2 2 2 0 Family of unknown function YjfB_motility PF14070.6 CQR57490.1 - 4.9e-15 55.4 6.8 5.4e-15 55.3 6.8 1.0 1 0 0 1 1 1 1 Putative motility protein Peptidase_M78 PF06114.13 CQR57491.1 - 1.2e-10 41.3 0.3 1.6e-10 40.9 0.3 1.2 1 0 0 1 1 1 1 IrrE N-terminal-like domain RNA_pol_A_CTD PF03118.15 CQR57493.1 - 0.00028 20.6 0.9 0.00037 20.2 0.2 1.6 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain HHH_2 PF12826.7 CQR57493.1 - 0.015 15.4 0.2 0.044 13.9 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif GUN4_N PF16416.5 CQR57493.1 - 0.07 13.1 0.2 0.11 12.5 0.2 1.3 1 1 0 1 1 1 0 ARM-like repeat domain, GUN4-N terminal DUF3139 PF11337.8 CQR57494.1 - 1.4e-10 41.6 1.6 1.7e-10 41.4 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3139) MarR PF01047.22 CQR57496.1 - 0.11 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Pribosyltran PF00156.27 CQR57497.1 - 7.6e-14 51.5 0.1 1e-13 51.1 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 CQR57497.1 - 0.07 12.6 0.1 0.14 11.6 0.1 1.5 1 1 0 2 2 2 0 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 CQR57497.1 - 0.073 13.1 0.2 0.9 9.5 0.1 2.0 1 1 1 2 2 2 0 Phosphoribosyl synthetase-associated domain OMPdecase PF00215.24 CQR57498.1 - 5.9e-45 153.6 0.0 7.6e-45 153.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CPSase_L_D2 PF02786.17 CQR57499.1 - 1.2e-122 407.2 0.3 2.8e-82 275.3 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 CQR57499.1 - 2.4e-41 140.9 0.0 5.3e-41 139.8 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Dala_Dala_lig_C PF07478.13 CQR57499.1 - 2.1e-19 69.9 0.3 4e-09 36.3 0.1 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus MGS PF02142.22 CQR57499.1 - 5.9e-19 68.1 0.5 7e-18 64.6 0.0 3.0 3 0 0 3 3 3 1 MGS-like domain ATP-grasp_3 PF02655.14 CQR57499.1 - 1.8e-17 63.8 0.9 6.6e-10 39.3 0.2 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp PF02222.22 CQR57499.1 - 1.8e-16 60.2 0.2 5.7e-07 29.3 0.1 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 CQR57499.1 - 2.8e-16 59.5 0.0 6.4e-08 32.4 0.0 3.0 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 CQR57499.1 - 6.2e-12 45.7 0.1 1.3e-07 31.6 0.1 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.6 CQR57499.1 - 1.1e-06 28.4 0.1 0.002 17.7 0.1 3.0 2 1 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 CQR57499.1 - 4.5e-05 23.1 0.2 0.11 12.1 0.1 3.3 3 1 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 CQR57499.1 - 0.0019 17.7 0.0 1.3 8.5 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain PrpR_N PF06506.11 CQR57499.1 - 0.042 13.4 0.9 5.1 6.7 0.1 3.7 4 0 0 4 4 4 0 Propionate catabolism activator Phage_attach PF05354.11 CQR57499.1 - 0.06 13.2 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Phage Head-Tail Attachment GAPES3 PF17154.4 CQR57499.1 - 0.21 11.5 0.4 3.9 7.5 0.1 2.6 2 0 0 2 2 2 0 Gammaproteobacterial periplasmic sensor domain CPSase_sm_chain PF00988.22 CQR57500.1 - 1.7e-51 173.4 0.0 2.9e-51 172.6 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 CQR57500.1 - 1.2e-48 165.4 0.0 2e-48 164.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 CQR57500.1 - 6.7e-07 29.3 0.4 3.9e-05 23.5 0.4 2.3 1 1 0 1 1 1 1 Peptidase C26 TPD52 PF04201.15 CQR57500.1 - 0.064 12.9 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Tumour protein D52 family IstB_IS21 PF01695.17 CQR57500.1 - 0.11 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Amidohydro_1 PF01979.20 CQR57501.1 - 1.5e-48 165.9 0.1 2.5e-48 165.2 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase family DHOase PF12890.7 CQR57501.1 - 3.3e-32 111.4 0.0 5.5e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 Dihydro-orotase-like Amidohydro_3 PF07969.11 CQR57501.1 - 5.8e-14 52.4 2.1 2.1e-05 24.2 0.0 3.2 2 1 1 3 3 3 3 Amidohydrolase family TatD_DNase PF01026.21 CQR57501.1 - 0.00054 19.4 0.1 0.0014 18.1 0.1 1.7 1 1 0 1 1 1 1 TatD related DNase OTCace_N PF02729.21 CQR57502.1 - 1.4e-41 141.9 0.0 2.7e-41 141.0 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 CQR57502.1 - 6.6e-25 88.0 0.6 3.6e-24 85.6 0.6 2.0 1 1 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pantoate_transf PF02548.15 CQR57502.1 - 0.022 14.2 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase DUF4431 PF14485.6 CQR57502.1 - 0.12 12.2 0.0 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4431) Pribosyltran PF00156.27 CQR57503.1 - 2.3e-20 72.7 0.1 2.9e-20 72.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 CQR57503.1 - 0.0018 17.7 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF1876 PF08962.11 CQR57503.1 - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1876) PRTase_2 PF15609.6 CQR57503.1 - 0.11 12.0 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase Aminotran_1_2 PF00155.21 CQR57504.1 - 3.9e-42 144.7 0.0 4.8e-42 144.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Ploopntkinase1 PF18748.1 CQR57504.1 - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 PseudoU_synth_2 PF00849.22 CQR57505.1 - 2e-36 125.5 0.1 2.7e-36 125.1 0.1 1.2 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 CQR57505.1 - 2.7e-10 39.8 0.0 5.6e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 S4 domain Ub-Mut7C PF14451.6 CQR57505.1 - 0.037 13.9 0.1 0.078 12.8 0.1 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin ECR1_N PF14382.6 CQR57505.1 - 0.12 12.2 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Exosome complex exonuclease RRP4 N-terminal region Peptidase_A8 PF01252.18 CQR57506.1 - 3e-41 141.0 7.6 3.4e-41 140.8 7.6 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II 7TMR-DISM_7TM PF07695.11 CQR57506.1 - 3.9 7.3 9.2 0.36 10.7 4.2 1.8 2 0 0 2 2 2 0 7TM diverse intracellular signalling zf-dskA_traR PF01258.17 CQR57507.1 - 6.8e-10 38.7 0.6 1.1e-09 38.1 0.6 1.3 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DUF2093 PF09866.9 CQR57507.1 - 0.00032 20.1 0.0 0.00057 19.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2093) tRNA-synt_1 PF00133.22 CQR57509.1 - 3.6e-195 649.7 2.1 1.6e-194 647.6 0.6 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 CQR57509.1 - 1e-29 103.4 0.0 7.7e-29 100.6 0.0 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 CQR57509.1 - 2.1e-24 86.0 0.6 1.3e-10 40.6 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 CQR57509.1 - 2.6e-05 23.7 0.0 0.007 15.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 CQR57509.1 - 3.7e-05 22.8 0.0 0.00035 19.6 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 CQR57509.1 - 0.00039 20.0 0.0 0.0011 18.6 0.0 1.7 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DivIVA PF05103.13 CQR57511.1 - 8.9e-50 168.2 9.7 1e-49 167.9 9.7 1.1 1 0 0 1 1 1 1 DivIVA protein HALZ PF02183.18 CQR57511.1 - 0.0059 16.8 1.1 0.0059 16.8 1.1 2.0 3 0 0 3 3 3 1 Homeobox associated leucine zipper Sec34 PF04136.15 CQR57511.1 - 0.011 15.6 6.8 0.79 9.6 6.8 2.7 1 1 0 1 1 1 0 Sec34-like family vATP-synt_E PF01991.18 CQR57511.1 - 0.018 14.4 9.9 0.11 11.8 6.3 2.1 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF2087 PF09860.9 CQR57511.1 - 0.025 14.7 0.2 0.072 13.2 0.2 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) ATP-synt_B PF00430.18 CQR57511.1 - 0.11 12.6 9.5 0.13 12.4 8.9 1.4 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF4446 PF14584.6 CQR57511.1 - 0.29 11.1 7.7 1.4 8.9 0.2 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) Peptidase_M41 PF01434.18 CQR57511.1 - 0.61 9.9 6.9 2.4 7.9 0.1 2.1 1 1 1 2 2 2 0 Peptidase family M41 RNA_polI_A14 PF08203.11 CQR57511.1 - 0.83 10.4 5.1 12 6.7 0.1 2.8 1 1 2 3 3 3 0 Yeast RNA polymerase I subunit RPA14 DUF1664 PF07889.12 CQR57511.1 - 0.96 9.5 5.0 1.2 9.2 4.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) YlmH_RBD PF17774.1 CQR57512.1 - 3.7e-17 62.4 0.0 8.6e-17 61.2 0.0 1.6 1 0 0 1 1 1 1 Putative RNA-binding domain in YlmH S4 PF01479.25 CQR57512.1 - 0.00015 21.4 0.0 0.00034 20.3 0.0 1.6 1 0 0 1 1 1 1 S4 domain DbpA PF03880.15 CQR57512.1 - 0.036 14.1 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 DbpA RNA binding domain S4_2 PF13275.6 CQR57512.1 - 0.052 13.4 0.0 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 S4 domain YGGT PF02325.17 CQR57513.1 - 2.6e-21 75.8 4.2 3.3e-21 75.5 4.2 1.1 1 0 0 1 1 1 1 YGGT family SepF PF04472.12 CQR57514.1 - 4.9e-29 100.4 0.0 7e-29 99.9 0.0 1.2 1 0 0 1 1 1 1 Cell division protein SepF DUF1574 PF07611.11 CQR57514.1 - 0.008 15.6 0.1 0.0092 15.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1574) PHA-1 PF06542.11 CQR57514.1 - 0.049 12.5 0.1 0.062 12.1 0.1 1.1 1 0 0 1 1 1 0 Regulator protein PHA-1 Ala_racemase_N PF01168.20 CQR57515.1 - 4.7e-21 75.4 0.1 5.6e-21 75.2 0.1 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Cu-oxidase_4 PF02578.15 CQR57516.1 - 5.1e-78 261.9 0.0 5.8e-78 261.7 0.0 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase PRC PF05239.16 CQR57517.1 - 6.4e-12 45.4 2.8 9.6e-12 44.8 2.8 1.2 1 0 0 1 1 1 1 PRC-barrel domain NgoMIV_restric PF09015.10 CQR57517.1 - 0.17 11.0 0.2 0.27 10.3 0.3 1.3 1 1 0 1 1 1 0 NgoMIV restriction enzyme Sigma70_r2 PF04542.14 CQR57518.1 - 7.6e-18 64.1 0.0 1.8e-17 62.9 0.0 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR57518.1 - 2.1e-15 56.0 1.7 1.2e-13 50.4 1.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 CQR57518.1 - 2.1e-09 37.4 0.0 1.4e-06 28.3 0.0 2.8 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 CQR57518.1 - 1.3e-07 31.2 0.6 5.2e-07 29.2 0.3 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 CQR57518.1 - 3e-05 24.0 0.2 0.0022 18.0 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix KORA PF16509.5 CQR57518.1 - 7.9e-05 22.9 0.7 0.0002 21.6 0.7 1.7 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_31 PF13560.6 CQR57518.1 - 0.00013 22.3 0.5 0.00099 19.4 0.1 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 CQR57518.1 - 0.00074 19.4 0.5 0.0016 18.4 0.1 1.7 2 0 0 2 2 2 1 ECF sigma factor HTH_23 PF13384.6 CQR57518.1 - 0.001 18.8 0.0 0.0098 15.7 0.0 2.4 3 0 0 3 3 2 1 Homeodomain-like domain GerE PF00196.19 CQR57518.1 - 0.0023 17.4 0.2 0.0066 16.0 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Trp_repressor PF01371.19 CQR57518.1 - 0.01 15.9 0.3 0.03 14.4 0.3 1.8 1 0 0 1 1 1 0 Trp repressor protein HTH_37 PF13744.6 CQR57518.1 - 0.019 14.9 1.1 0.16 11.9 0.6 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_19 PF12844.7 CQR57518.1 - 0.023 14.7 0.3 0.16 12.0 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR57518.1 - 0.031 14.4 0.0 0.47 10.6 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix domain AsiA PF09010.10 CQR57518.1 - 0.032 14.3 0.5 4 7.6 0.0 2.6 2 1 0 2 2 2 0 Anti-Sigma Factor A HTH_IclR PF09339.10 CQR57518.1 - 0.04 13.7 0.0 13 5.7 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.7 CQR57518.1 - 0.066 13.1 0.1 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 MarR family DUF1492 PF07374.11 CQR57518.1 - 0.1 12.8 0.1 0.25 11.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) Sigma70_r2 PF04542.14 CQR57519.1 - 2.6e-19 68.7 0.2 5.2e-19 67.8 0.0 1.6 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR57519.1 - 6e-16 57.7 3.5 1.2e-15 56.7 3.5 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 CQR57519.1 - 3.8e-06 26.9 0.4 1e-05 25.5 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 CQR57519.1 - 2.3e-05 24.6 0.1 5e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR57519.1 - 0.00063 19.4 5.1 0.00072 19.2 1.9 2.7 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR57519.1 - 0.00093 18.9 0.0 0.0034 17.2 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 CQR57519.1 - 0.0017 18.3 0.3 0.0039 17.1 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR57519.1 - 0.0023 17.8 0.4 0.016 15.1 0.0 2.6 3 1 1 4 4 3 1 MarR family HTH_19 PF12844.7 CQR57519.1 - 0.0025 17.8 3.3 0.0076 16.2 0.8 3.0 3 1 0 3 3 3 1 Helix-turn-helix domain KORA PF16509.5 CQR57519.1 - 0.0083 16.4 0.0 0.018 15.3 0.0 1.6 1 1 0 1 1 1 1 TrfB plasmid transcriptional repressor TBPIP PF07106.13 CQR57519.1 - 0.011 15.7 0.1 0.061 13.3 0.0 2.2 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain HTH_25 PF13413.6 CQR57519.1 - 0.023 14.6 0.1 0.064 13.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 CQR57519.1 - 0.036 14.3 0.1 0.2 11.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 CQR57519.1 - 0.045 13.6 0.0 3.3 7.6 0.0 2.6 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 CQR57519.1 - 0.045 13.7 0.2 0.92 9.5 0.1 2.7 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.13 CQR57519.1 - 0.08 13.1 0.0 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain PrmC_N PF17827.1 CQR57519.1 - 0.08 13.5 0.5 0.62 10.7 0.1 2.5 3 0 0 3 3 3 0 PrmC N-terminal domain HTH_Tnp_4 PF13613.6 CQR57519.1 - 0.16 11.7 0.5 2.8 7.8 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix of DDE superfamily endonuclease Peptidase_U4 PF03419.13 CQR57520.1 - 1.6e-81 273.8 0.9 1.8e-81 273.6 0.9 1.0 1 0 0 1 1 1 1 Sporulation factor SpoIIGA PDDEXK_2 PF12784.7 CQR57521.1 - 1.8e-67 227.3 0.0 2.2e-67 227.0 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase Yae1_N PF09811.9 CQR57521.1 - 7.3e-09 35.2 27.4 0.01 15.5 3.0 3.6 1 1 0 2 2 2 2 Essential protein Yae1, N terminal Tubulin PF00091.25 CQR57522.1 - 8.4e-45 153.4 1.0 1.3e-44 152.8 1.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 CQR57522.1 - 3.1e-34 117.1 2.9 3.1e-34 117.1 2.9 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ATP-synt_D PF01813.17 CQR57522.1 - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 2 0 0 2 2 2 0 ATP synthase subunit D Tubulin_2 PF13809.6 CQR57522.1 - 2.1 7.5 7.9 3.6 6.7 2.4 2.4 1 1 1 2 2 2 0 Tubulin like FtsA PF14450.6 CQR57523.1 - 9.3e-32 109.5 3.6 1.6e-20 73.5 0.0 2.2 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 CQR57523.1 - 6.8e-28 96.9 2.3 6.8e-28 96.9 2.3 2.1 2 0 0 2 2 2 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 CQR57523.1 - 1e-09 37.7 2.2 1.1e-08 34.3 0.4 2.2 2 0 0 2 2 2 1 MreB/Mbl protein EutA PF06277.11 CQR57523.1 - 6.3e-07 28.6 0.1 1.5e-06 27.4 0.1 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA PilM_2 PF11104.8 CQR57523.1 - 7.9e-07 28.4 1.6 0.017 14.2 0.0 3.4 3 1 0 3 3 3 2 Type IV pilus assembly protein PilM; Actin PF00022.19 CQR57523.1 - 0.021 13.4 0.2 0.3 9.6 0.1 2.2 1 1 1 2 2 2 0 Actin DUF4258 PF14076.6 CQR57523.1 - 0.087 13.2 0.6 0.26 11.7 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) FGGY_N PF00370.21 CQR57523.1 - 0.13 11.8 3.5 0.066 12.8 1.6 1.5 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain Nodulin-like PF06813.13 CQR57524.1 - 0.086 12.3 0.0 0.09 12.2 0.0 1.2 1 0 0 1 1 1 0 Nodulin-like POTRA_1 PF08478.10 CQR57525.1 - 2.7e-16 59.6 0.0 5.1e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 POTRA domain, FtsQ-type DUF3989 PF13150.6 CQR57525.1 - 0.044 13.5 0.1 0.089 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) POTRA PF07244.15 CQR57525.1 - 0.055 14.0 0.1 0.15 12.7 0.1 1.9 1 1 0 1 1 1 0 Surface antigen variable number repeat EPSP_synthase PF00275.20 CQR57526.1 - 6.6e-95 318.2 1.6 7.8e-95 318.0 1.6 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B5 PF03484.15 CQR57526.1 - 0.057 13.7 0.1 2.7 8.3 0.0 3.3 4 0 0 4 4 4 0 tRNA synthetase B5 domain Glyco_transf_28 PF03033.20 CQR57527.1 - 6.4e-49 165.6 0.6 7.9e-48 162.0 0.0 2.6 3 0 0 3 3 3 1 Glycosyltransferase family 28 N-terminal domain Glyco_tran_28_C PF04101.16 CQR57527.1 - 7.1e-34 117.2 0.0 1.3e-33 116.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 CQR57527.1 - 0.00043 19.6 0.0 0.61 9.3 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_trans_4_4 PF13579.6 CQR57527.1 - 0.0059 17.1 0.1 0.099 13.1 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain UDPGT PF00201.18 CQR57527.1 - 0.0099 14.7 0.0 0.015 14.2 0.0 1.1 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_transf_4 PF13439.6 CQR57527.1 - 0.013 15.5 0.0 0.043 13.8 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase Family 4 CmcI PF04989.12 CQR57527.1 - 0.079 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Cephalosporin hydroxylase Peripla_BP_2 PF01497.18 CQR57527.1 - 0.13 11.8 0.0 9.6 5.7 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein FTSW_RODA_SPOVE PF01098.19 CQR57528.1 - 1.7e-119 399.0 29.9 2e-119 398.8 29.9 1.0 1 0 0 1 1 1 1 Cell cycle protein Mur_ligase_M PF08245.12 CQR57529.1 - 3.1e-33 115.4 0.0 4.9e-33 114.7 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CQR57529.1 - 5.3e-06 26.6 0.0 3.1e-05 24.1 0.0 2.3 1 1 1 2 2 2 1 Mur ligase family, glutamate ligase domain Pyr_redox_3 PF13738.6 CQR57529.1 - 0.00097 18.5 1.7 0.001 18.4 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 CQR57529.1 - 0.017 14.5 0.0 0.043 13.2 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pribosyltran PF00156.27 CQR57529.1 - 0.02 14.4 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosyl transferase domain Pyr_redox PF00070.27 CQR57529.1 - 0.11 13.0 0.4 0.38 11.3 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_4 PF00953.21 CQR57530.1 - 1e-36 126.4 20.0 1e-36 126.4 20.0 2.2 3 1 0 3 3 3 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 CQR57530.1 - 8.5e-05 21.9 4.0 8.5e-05 21.9 4.0 2.0 2 0 0 2 2 2 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Mur_ligase_M PF08245.12 CQR57531.1 - 1.8e-47 161.8 0.0 2.9e-47 161.1 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CQR57531.1 - 9.2e-17 61.1 0.1 1.5e-15 57.2 0.0 2.9 4 0 0 4 4 4 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 CQR57531.1 - 3.7e-09 36.8 0.0 8.2e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Mur ligase family, catalytic domain HBS1_N PF08938.10 CQR57531.1 - 0.036 14.4 0.0 0.72 10.2 0.0 2.7 3 0 0 3 3 3 0 HBS1 N-terminus APOBEC_C PF05240.14 CQR57531.1 - 0.18 11.8 0.1 0.36 10.8 0.1 1.4 1 0 0 1 1 1 0 APOBEC-like C-terminal domain NAD1 PF18778.1 CQR57531.1 - 0.29 11.2 0.4 0.52 10.4 0.0 1.5 2 0 0 2 2 2 0 Novel AID APOBEC clade 1 Mur_ligase_M PF08245.12 CQR57532.1 - 4.7e-56 189.8 1.3 8.9e-56 188.9 1.3 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CQR57532.1 - 4.9e-26 90.8 0.4 7.7e-23 80.6 0.0 3.3 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 CQR57532.1 - 4.6e-14 52.5 0.0 1.3e-13 51.0 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, catalytic domain LpxD PF04613.14 CQR57532.1 - 0.013 15.2 0.0 0.044 13.5 0.0 1.9 1 0 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MoCF_biosynth PF00994.24 CQR57532.1 - 0.026 14.2 0.2 1.2 8.8 0.1 2.9 3 0 0 3 3 3 0 Probable molybdopterin binding domain DUF1611 PF07755.11 CQR57532.1 - 0.08 12.2 0.3 0.16 11.2 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain RraA-like PF03737.15 CQR57532.1 - 0.089 13.0 0.3 2.2 8.5 0.0 2.7 3 0 0 3 3 3 0 Aldolase/RraA Transpeptidase PF00905.22 CQR57533.1 - 3.3e-84 282.7 0.0 4.8e-84 282.2 0.0 1.2 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 CQR57533.1 - 1.8e-23 83.8 0.2 9.2e-22 78.2 0.3 2.8 2 1 0 2 2 2 1 Penicillin-binding Protein dimerisation domain PASTA PF03793.19 CQR57533.1 - 4.7e-08 32.8 0.0 1.4e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 PASTA domain Transpeptidase PF00905.22 CQR57534.1 - 3.2e-80 269.6 0.3 4.8e-80 269.0 0.3 1.3 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 CQR57534.1 - 7e-22 78.6 2.3 4.2e-20 72.8 2.3 2.7 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain PASTA PF03793.19 CQR57534.1 - 2.2e-15 56.2 0.2 6.1e-10 38.8 0.0 3.2 2 0 0 2 2 2 2 PASTA domain DivIC PF04977.15 CQR57535.1 - 6.4e-05 22.6 0.1 0.00012 21.8 0.1 1.4 1 0 0 1 1 1 1 Septum formation initiator UPF0242 PF06785.11 CQR57535.1 - 0.028 14.5 1.4 0.041 14.0 1.3 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DPM3 PF08285.11 CQR57535.1 - 0.059 13.6 0.1 0.084 13.1 0.1 1.3 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2681 PF10883.8 CQR57535.1 - 1.2 9.5 5.8 0.99 9.9 3.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2681) Methyltransf_5 PF01795.19 CQR57536.1 - 3.4e-124 414.3 0.0 3.8e-124 414.2 0.0 1.0 1 0 0 1 1 1 1 MraW methylase family Methyltransf_25 PF13649.6 CQR57536.1 - 0.0061 17.2 0.0 0.04 14.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR57536.1 - 0.017 14.4 0.0 0.56 9.5 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family MraZ PF02381.18 CQR57537.1 - 5e-49 164.2 0.1 3.4e-24 84.6 0.0 2.0 2 0 0 2 2 2 2 MraZ protein, putative antitoxin-like WG_beta_rep PF14903.6 CQR57537.1 - 0.073 13.4 0.0 0.18 12.1 0.0 1.7 1 0 0 1 1 1 0 WG containing repeat YuiB PF14068.6 CQR57537.1 - 0.1 13.2 0.0 0.35 11.5 0.0 1.7 2 0 0 2 2 2 0 Putative membrane protein DUF2375 PF09558.10 CQR57537.1 - 0.18 11.9 0.0 0.93 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2375) AdoHcyase_NAD PF00670.21 CQR57538.1 - 5e-53 179.5 2.5 5.3e-53 179.4 0.8 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AdoHcyase PF05221.17 CQR57538.1 - 6.1e-53 179.9 0.0 4.7e-27 94.9 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase 2-Hacid_dh_C PF02826.19 CQR57538.1 - 1.3e-09 37.7 0.1 2.6e-09 36.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 CQR57538.1 - 3.4e-08 33.2 0.2 6.9e-08 32.2 0.2 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 CQR57538.1 - 0.028 13.7 0.9 0.065 12.5 0.9 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Myco_19_kDa PF05481.12 CQR57538.1 - 0.05 13.9 0.6 0.15 12.3 0.1 2.0 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen BshC PF10079.9 CQR57539.1 - 5.5e-161 537.0 0.0 6.8e-161 536.7 0.0 1.0 1 0 0 1 1 1 1 Bacillithiol biosynthesis BshC DASH_Dad3 PF08656.10 CQR57539.1 - 0.026 14.6 0.0 3.4 7.8 0.0 2.7 2 0 0 2 2 2 0 DASH complex subunit Dad3 Urocanase_N PF17391.2 CQR57539.1 - 0.12 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Urocanase N-terminal domain PEP-utilisers_N PF05524.13 CQR57539.1 - 0.18 12.0 0.0 0.18 12.0 0.0 2.6 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal DUF3557 PF12078.8 CQR57539.1 - 0.22 11.5 0.4 1.2 9.1 0.0 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF3557) ABC_tran PF00005.27 CQR57540.1 - 2.9e-33 115.3 0.0 4.3e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR57540.1 - 3.5e-07 30.7 0.2 6.6e-07 29.8 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 CQR57540.1 - 0.0001 21.8 0.0 0.00015 21.2 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR57540.1 - 0.0024 18.1 0.3 0.018 15.3 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 CQR57540.1 - 0.027 14.3 0.1 0.39 10.5 0.0 2.2 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 CQR57540.1 - 0.032 14.6 0.0 0.088 13.2 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR57540.1 - 0.052 13.9 0.0 0.078 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 CQR57540.1 - 0.095 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 CQR57540.1 - 0.11 12.2 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 CQR57540.1 - 0.13 11.7 0.1 7.7 5.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_13 PF13166.6 CQR57540.1 - 0.15 10.7 0.0 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 CQR57541.1 - 2.7e-28 99.2 0.1 3.8e-28 98.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 CQR57541.1 - 3e-19 69.3 0.0 5.5e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 CQR57541.1 - 6e-07 29.6 0.1 6.7e-06 26.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR57541.1 - 3.1e-06 26.8 0.2 5.2e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR57541.1 - 0.0059 17.0 0.1 0.0069 16.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 CQR57541.1 - 0.0071 15.9 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF87 PF01935.17 CQR57541.1 - 0.0071 16.5 0.4 0.019 15.1 0.1 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain NACHT PF05729.12 CQR57541.1 - 0.0081 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 CQR57541.1 - 0.0081 15.9 0.3 0.075 12.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain ATP-synt_ab PF00006.25 CQR57541.1 - 0.014 15.1 0.8 0.025 14.2 0.6 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 CQR57541.1 - 0.016 15.6 1.0 0.52 10.7 0.1 2.4 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 CQR57541.1 - 0.02 15.2 0.4 0.098 12.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 CQR57541.1 - 0.021 14.6 0.0 0.044 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 CQR57541.1 - 0.026 13.7 0.1 0.56 9.3 0.2 2.1 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.21 CQR57541.1 - 0.027 13.8 0.1 0.14 11.5 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 CQR57541.1 - 0.045 13.2 0.1 4 6.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 CQR57541.1 - 0.1 12.3 0.5 0.6 9.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 CQR57541.1 - 0.14 11.9 0.1 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 CQR57542.1 - 8.6e-29 100.6 14.4 1.7e-28 99.6 12.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 CQR57542.1 - 4.5e-15 55.3 0.2 4.5e-15 55.3 0.2 3.4 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 CQR57543.1 - 4.3e-38 130.9 16.3 4.3e-38 130.9 16.3 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 CQR57544.1 - 4.5e-81 272.7 12.6 6.8e-81 272.1 12.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PSA_CBD PF18341.1 CQR57544.1 - 0.19 11.8 0.0 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 PSA endolysin C-terminal cell wall binding domain DUF3397 PF11877.8 CQR57545.1 - 6.3e-27 94.0 12.8 7.2e-27 93.8 12.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3397) TatC PF00902.18 CQR57545.1 - 0.17 11.7 8.7 0.24 11.2 8.7 1.2 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) DUF4131 PF13567.6 CQR57545.1 - 3.9 7.1 9.8 1.7 8.3 2.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ApbA_C PF08546.11 CQR57546.1 - 2.8e-34 118.0 0.1 4.3e-34 117.4 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 CQR57546.1 - 8.5e-22 77.4 0.0 2.6e-21 75.9 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 CQR57546.1 - 6.7e-07 29.4 0.0 2.7e-05 24.2 0.0 2.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 CQR57546.1 - 0.00063 19.9 0.0 0.0029 17.8 0.0 1.8 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR57546.1 - 0.0011 19.4 0.1 0.0033 18.0 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 CQR57546.1 - 0.039 13.8 0.0 0.087 12.7 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 CQR57546.1 - 0.05 13.7 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 CQR57546.1 - 0.054 13.8 0.0 0.18 12.1 0.0 2.0 1 1 0 1 1 1 0 TrkA-N domain TubC_N PF18563.1 CQR57546.1 - 0.099 12.6 0.0 2.9 7.9 0.0 2.7 3 0 0 3 3 3 0 TubC N-terminal docking domain Myb_DNA-bind_6 PF13921.6 CQR57547.1 - 3.5e-05 23.9 0.1 0.00011 22.4 0.1 1.9 1 0 0 1 1 1 1 Myb-like DNA-binding domain KLRAQ PF10205.9 CQR57547.1 - 0.012 15.9 4.0 0.024 14.9 4.0 1.6 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein Med21 PF11221.8 CQR57547.1 - 0.012 15.9 1.6 0.012 15.9 1.6 1.6 2 0 0 2 2 2 0 Subunit 21 of Mediator complex Myb_DNA-binding PF00249.31 CQR57547.1 - 0.016 15.4 0.0 0.066 13.4 0.0 2.2 1 1 0 1 1 1 0 Myb-like DNA-binding domain Phage_GP20 PF06810.11 CQR57547.1 - 0.026 14.3 1.6 0.041 13.7 0.9 1.6 1 1 0 1 1 1 0 Phage minor structural protein GP20 DivIC PF04977.15 CQR57547.1 - 0.046 13.5 6.1 0.13 12.1 5.8 1.9 1 1 0 1 1 1 0 Septum formation initiator Med28 PF11594.8 CQR57547.1 - 0.047 13.8 0.0 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Mediator complex subunit 28 YabA PF06156.13 CQR57547.1 - 0.36 11.5 3.4 0.85 10.3 3.4 1.7 1 1 0 1 1 1 0 Initiation control protein YabA DUF2626 PF11117.8 CQR57548.1 - 1.2e-33 115.6 17.3 1.4e-33 115.5 17.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2626) HMMR_N PF15905.5 CQR57549.1 - 0.0054 16.3 0.9 0.0054 16.3 0.9 2.0 2 0 0 2 2 2 1 Hyaluronan mediated motility receptor N-terminal Trimer_CC PF08954.11 CQR57549.1 - 0.019 14.5 1.7 0.12 11.9 0.2 2.6 1 1 1 2 2 2 0 Trimerisation motif Uso1_p115_C PF04871.13 CQR57549.1 - 0.035 14.5 8.6 0.61 10.5 0.8 2.3 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region SRA1 PF07304.11 CQR57549.1 - 0.089 12.6 0.2 0.47 10.2 0.0 2.0 2 0 0 2 2 2 0 Steroid receptor RNA activator (SRA1) DUF2993 PF11209.8 CQR57549.1 - 0.092 13.0 0.0 0.21 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2993) ERM PF00769.19 CQR57549.1 - 0.097 12.5 17.3 0.44 10.3 6.5 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family GAS PF13851.6 CQR57549.1 - 0.13 11.6 9.0 0.038 13.3 1.0 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 CQR57549.1 - 0.21 11.8 5.0 0.51 10.5 0.3 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Osmo_CC PF08946.10 CQR57549.1 - 0.31 11.3 2.2 0.9 9.8 2.2 1.9 1 0 0 1 1 1 0 Osmosensory transporter coiled coil Occludin_ELL PF07303.13 CQR57549.1 - 0.31 11.8 6.5 1.3 9.8 1.5 3.0 2 1 0 2 2 2 0 Occludin homology domain DUF3972 PF13118.6 CQR57549.1 - 0.45 11.0 4.5 1.4 9.4 4.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3972) Syntaxin-6_N PF09177.11 CQR57549.1 - 0.48 11.0 5.7 0.9 10.1 0.8 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Nsp1_C PF05064.13 CQR57549.1 - 1.3 8.9 10.2 0.71 9.7 3.1 2.5 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF724 PF05266.14 CQR57549.1 - 2.1 8.2 8.3 8.9 6.1 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF724) UPF0449 PF15136.6 CQR57549.1 - 3 8.4 6.1 1.4 9.4 1.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF4404 PF14357.6 CQR57549.1 - 6.8 7.4 9.2 0.38 11.4 0.9 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) SBP_bac_8 PF13416.6 CQR57550.1 - 1.3e-23 84.2 0.0 2.7e-23 83.2 0.0 1.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR57550.1 - 8.9e-15 55.4 0.2 1.8e-14 54.4 0.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR57550.1 - 2.5e-07 30.7 0.1 4.7e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57550.1 - 0.0017 17.8 0.0 1.3 8.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein DDE_Tnp_1 PF01609.21 CQR57551.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR57551.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR57551.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR57551.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain PhoH PF02562.16 CQR57552.1 - 3.8e-53 180.0 0.0 2.8e-52 177.2 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein PIN_4 PF13638.6 CQR57552.1 - 7.8e-35 120.0 0.1 1.3e-34 119.4 0.1 1.3 1 0 0 1 1 1 1 PIN domain AAA_30 PF13604.6 CQR57552.1 - 6.9e-13 48.7 0.0 2.8e-11 43.5 0.0 3.1 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.6 CQR57552.1 - 5.4e-07 30.0 1.5 7.8e-06 26.2 0.2 3.1 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 CQR57552.1 - 1.6e-05 25.2 0.0 0.0086 16.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 CQR57552.1 - 0.0001 22.1 0.3 0.00033 20.5 0.0 1.9 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 CQR57552.1 - 0.0002 21.2 0.0 0.28 10.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 CQR57552.1 - 0.0018 17.6 0.1 0.029 13.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.21 CQR57552.1 - 0.019 14.5 0.3 0.17 11.4 0.0 2.1 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain DEAD PF00270.29 CQR57552.1 - 0.02 14.6 0.1 2.3 8.0 0.0 3.1 3 1 1 4 4 4 0 DEAD/DEAH box helicase ABC_tran PF00005.27 CQR57552.1 - 0.027 15.0 0.0 0.5 10.9 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_25 PF13481.6 CQR57552.1 - 0.032 13.8 0.0 0.07 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR57552.1 - 0.046 13.4 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.29 CQR57552.1 - 0.054 13.9 0.7 7.2 7.0 0.1 3.5 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR57552.1 - 0.054 13.9 0.5 0.56 10.6 0.1 2.6 1 1 1 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 CQR57552.1 - 0.2 11.1 0.0 0.57 9.7 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region Spore_YhcN_YlaJ PF09580.10 CQR57553.1 - 2e-13 50.8 0.0 2.5e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LPAM_1 PF08139.12 CQR57553.1 - 3.1 8.5 6.3 5.4 7.7 6.3 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Putative_PNPOx PF01243.20 CQR57554.1 - 0.00013 22.1 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase F420H2_quin_red PF04075.14 CQR57554.1 - 0.06 13.5 0.4 0.11 12.6 0.1 1.7 2 1 0 2 2 2 0 F420H(2)-dependent quinone reductase LytR_cpsA_psr PF03816.14 CQR57555.1 - 1.4e-33 116.2 0.5 2e-33 115.7 0.5 1.2 1 0 0 1 1 1 1 Cell envelope-related transcriptional attenuator domain DUF2207 PF09972.9 CQR57555.1 - 0.0019 17.0 0.0 0.0031 16.4 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) YlaH PF14036.6 CQR57556.1 - 1.5e-24 86.1 9.3 1.7e-24 85.9 9.3 1.0 1 0 0 1 1 1 1 YlaH-like protein COX1 PF00115.20 CQR57556.1 - 0.003 16.5 3.3 0.003 16.5 3.3 1.3 1 1 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF2955 PF11168.8 CQR57556.1 - 0.042 13.7 8.2 0.13 12.1 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2955) Ceramidase PF05875.12 CQR57556.1 - 0.097 12.1 1.1 0.098 12.1 1.1 1.0 1 0 0 1 1 1 0 Ceramidase DUF4079 PF13301.6 CQR57556.1 - 0.46 10.6 5.6 3.5 7.8 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4079) TRAP_alpha PF03896.16 CQR57556.1 - 4.2 6.5 4.3 5.4 6.1 0.4 2.0 1 1 1 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit GTP_EFTU PF00009.27 CQR57557.1 - 2.1e-58 197.1 0.2 3.1e-58 196.5 0.2 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 CQR57557.1 - 4e-22 78.0 0.0 1.2e-21 76.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 CQR57557.1 - 1.4e-12 47.8 4.0 1.4e-12 47.8 4.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 EFG_II PF14492.6 CQR57557.1 - 1.6e-06 28.1 0.0 5.1e-06 26.5 0.0 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 CQR57557.1 - 3.2e-06 27.2 0.1 8.2e-06 25.9 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.21 CQR57557.1 - 0.0019 17.6 0.0 0.0075 15.7 0.0 1.8 2 0 0 2 2 2 1 ADP-ribosylation factor family Septin PF00735.18 CQR57557.1 - 0.0023 17.3 0.0 0.0041 16.4 0.0 1.3 1 0 0 1 1 1 1 Septin SRPRB PF09439.10 CQR57557.1 - 0.01 15.3 0.2 0.081 12.3 0.2 2.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 CQR57557.1 - 0.011 15.8 0.0 0.31 11.1 0.0 2.3 1 1 1 2 2 2 0 Dynamin family FeoB_N PF02421.18 CQR57557.1 - 0.017 14.6 0.2 0.46 10.0 0.2 3.2 3 1 0 3 3 3 0 Ferrous iron transport protein B Roc PF08477.13 CQR57557.1 - 0.11 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF4347 PF14252.6 CQR57557.1 - 0.17 11.7 0.1 0.72 9.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4347) TerC PF03741.16 CQR57559.1 - 1.2e-43 148.9 8.3 1.7e-43 148.4 8.3 1.2 1 0 0 1 1 1 1 Integral membrane protein TerC family TerC PF03741.16 CQR57560.1 - 6.4e-42 143.3 14.8 6.4e-42 143.3 14.8 1.8 1 1 1 2 2 2 1 Integral membrane protein TerC family Cyt_bd_oxida_I PF01654.17 CQR57560.1 - 0.13 10.8 9.8 0.24 10.0 9.8 1.5 1 1 0 1 1 1 0 Cytochrome bd terminal oxidase subunit I ThiI PF02568.14 CQR57561.1 - 2.3e-63 213.4 0.0 3.1e-63 212.9 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 CQR57561.1 - 2.5e-13 50.4 0.0 3.9e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 CQR57561.1 - 3.7e-07 29.8 0.0 5.3e-05 22.8 0.0 2.5 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Aminotran_5 PF00266.19 CQR57562.1 - 1e-63 215.6 0.0 1.2e-63 215.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 CQR57562.1 - 0.0019 17.5 0.1 0.003 16.9 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Glyco_trans_4_4 PF13579.6 CQR57562.1 - 0.0032 17.9 1.6 1.7 9.0 0.0 2.9 3 0 0 3 3 3 2 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 CQR57562.1 - 0.014 15.4 0.0 1.5 8.8 0.0 2.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 SLT PF01464.20 CQR57563.1 - 1.3e-29 102.2 0.1 3.3e-29 100.9 0.0 1.6 2 0 0 2 2 2 1 Transglycosylase SLT domain Lysozyme_like PF13702.6 CQR57563.1 - 0.00069 19.4 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 Lysozyme-like SLT_2 PF13406.6 CQR57563.1 - 0.0043 16.3 0.3 0.052 12.8 0.0 2.2 1 1 1 2 2 2 1 Transglycosylase SLT domain Phage_lysozyme2 PF18013.1 CQR57563.1 - 0.056 13.5 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Phage tail lysozyme DUF4190 PF13828.6 CQR57564.1 - 0.61 9.9 6.0 2.3 8.0 5.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4190) DUF5353 PF17304.2 CQR57564.1 - 0.96 9.2 6.2 1.3 8.9 4.9 1.8 1 1 0 1 1 1 0 Family of unknown function (DUF5353) DUF1540 PF07561.11 CQR57565.1 - 2e-15 56.8 2.6 2.8e-15 56.3 2.6 1.2 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1540) DUF3907 PF13047.6 CQR57566.1 - 1.4e-61 206.8 1.8 1.6e-61 206.6 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3907) Integrase_DNA PF02920.15 CQR57566.1 - 0.026 14.2 0.2 0.062 13.0 0.2 1.6 1 0 0 1 1 1 0 DNA binding domain of tn916 integrase Peptidase_S8 PF00082.22 CQR57567.1 - 5.5e-51 173.6 7.1 9e-51 172.9 7.1 1.3 1 0 0 1 1 1 1 Subtilase family Aminotran_1_2 PF00155.21 CQR57568.1 - 1e-30 107.2 0.0 1.3e-30 106.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 CQR57568.1 - 8.4e-15 54.2 0.0 4.4e-14 51.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 CQR57568.1 - 1.7e-08 33.7 0.0 5.6e-08 32.0 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase HTH_36 PF13730.6 CQR57568.1 - 0.018 15.0 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 CQR57568.1 - 0.051 13.5 0.0 0.16 11.9 0.0 1.9 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 CQR57568.1 - 0.11 12.8 0.0 0.74 10.1 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 CQR57568.1 - 0.12 12.3 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain Aminotran_1_2 PF00155.21 CQR57569.1 - 9.3e-38 130.3 0.0 1e-37 130.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 CQR57569.1 - 5.1e-13 48.6 0.0 6.8e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 CQR57569.1 - 0.038 13.3 0.0 0.06 12.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase NIF3 PF01784.18 CQR57570.1 - 3e-83 279.2 0.1 3.8e-83 278.9 0.1 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) TrmK PF04816.12 CQR57571.1 - 9.1e-58 195.2 0.0 8.7e-57 192.0 0.0 1.9 1 1 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_18 PF12847.7 CQR57571.1 - 1.3e-46 158.2 0.0 1.8e-46 157.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FlxA PF14282.6 CQR57571.1 - 0.05 13.6 0.1 0.077 13.0 0.1 1.3 1 0 0 1 1 1 0 FlxA-like protein Sigma70_r3 PF04539.16 CQR57573.1 - 1.7e-32 111.3 6.7 5.5e-32 109.7 2.6 3.1 3 0 0 3 3 3 1 Sigma-70 region 3 Sigma70_r2 PF04542.14 CQR57573.1 - 1e-22 79.7 0.1 2e-22 78.8 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR57573.1 - 2.8e-22 78.0 8.3 5.9e-20 70.5 2.4 2.9 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r1_2 PF00140.20 CQR57573.1 - 5.3e-18 64.7 0.6 1.6e-17 63.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70 factor, region 1.2 Sigma70_r1_1 PF03979.14 CQR57573.1 - 8.5e-18 64.2 8.3 1.8e-17 63.2 4.7 2.5 2 0 0 2 2 2 1 Sigma-70 factor, region 1.1 Exonuc_VII_L PF02601.15 CQR57573.1 - 0.011 15.3 0.5 0.043 13.4 0.0 2.0 2 1 0 2 2 2 0 Exonuclease VII, large subunit DUF2316 PF10078.9 CQR57573.1 - 0.46 10.7 3.7 2.5 8.4 0.2 3.6 3 1 2 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2316) Toprim_N PF08275.11 CQR57574.1 - 3e-41 140.5 0.1 5.6e-41 139.6 0.1 1.5 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain zf-CHC2 PF01807.20 CQR57574.1 - 2.5e-33 113.8 0.0 5.4e-33 112.7 0.0 1.5 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_2 PF13155.6 CQR57574.1 - 6.3e-18 65.0 0.0 1.5e-17 63.8 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim_4 PF13662.6 CQR57574.1 - 2.7e-17 63.0 0.0 9.9e-17 61.2 0.1 2.0 2 0 0 2 2 2 1 Toprim domain DnaB_bind PF10410.9 CQR57574.1 - 4.3e-10 39.6 0.4 2.4e-09 37.2 0.4 2.4 3 0 0 3 3 3 1 DnaB-helicase binding domain of primase Toprim_3 PF13362.6 CQR57574.1 - 2e-07 31.2 0.0 4.4e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.22 CQR57574.1 - 5.1e-05 23.4 0.0 0.00013 22.2 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DnaG_DnaB_bind PF08278.11 CQR57574.1 - 0.0013 19.3 0.0 0.003 18.1 0.0 1.6 1 0 0 1 1 1 1 DNA primase DnaG DnaB-binding DnaB PF00772.21 CQR57574.1 - 0.051 13.7 0.0 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase N terminal domain DUF188 PF02639.14 CQR57575.1 - 9.5e-37 125.6 0.0 1.3e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 CBFB_NFYA PF02045.15 CQR57575.1 - 0.072 13.7 0.5 0.13 12.9 0.5 1.4 1 0 0 1 1 1 0 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B tRNA_synt_2f PF02092.17 CQR57576.1 - 2.9e-209 696.4 0.4 3.5e-209 696.2 0.4 1.1 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.15 CQR57576.1 - 1.3e-08 35.0 1.3 3.2e-08 33.8 0.2 2.1 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_2e PF02091.15 CQR57577.1 - 5e-149 495.1 0.0 5.7e-149 494.9 0.0 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit RecO_C PF02565.15 CQR57578.1 - 1.2e-42 145.4 0.1 1.6e-42 144.9 0.1 1.2 1 0 0 1 1 1 1 Recombination protein O C terminal RecO_N PF11967.8 CQR57578.1 - 1.1e-21 76.5 0.0 2.3e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Recombination protein O N terminal RecO_N_2 PF13114.6 CQR57578.1 - 1.1e-19 69.9 0.0 2.3e-19 68.9 0.0 1.6 1 0 0 1 1 1 1 RecO N terminal YqzL PF14006.6 CQR57579.1 - 5e-13 49.2 1.2 7.6e-13 48.6 1.2 1.4 1 1 0 1 1 1 1 YqzL-like protein MMR_HSR1 PF01926.23 CQR57580.1 - 4.2e-26 91.3 0.2 7.4e-26 90.5 0.2 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase KH_2 PF07650.17 CQR57580.1 - 2.4e-21 75.3 1.4 5.2e-21 74.3 1.4 1.6 1 0 0 1 1 1 1 KH domain GTP_EFTU PF00009.27 CQR57580.1 - 6.2e-16 58.5 0.1 8.2e-14 51.6 0.1 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.18 CQR57580.1 - 8.4e-16 57.9 0.5 1.3e-15 57.2 0.5 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 CQR57580.1 - 7.2e-11 42.4 0.1 0.0002 21.5 0.0 2.3 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 CQR57580.1 - 1.4e-06 28.3 0.4 0.0021 18.0 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 CQR57580.1 - 7.8e-06 25.4 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family MMR_HSR1_Xtn PF16897.5 CQR57580.1 - 5.9e-05 23.0 0.1 0.00014 21.8 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 CQR57580.1 - 0.00013 21.6 0.0 0.00025 20.7 0.0 1.5 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 CQR57580.1 - 0.00042 19.8 0.1 0.00064 19.2 0.1 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 CQR57580.1 - 0.00093 19.4 0.3 0.0046 17.2 0.3 2.1 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 CQR57580.1 - 0.0016 18.2 0.2 0.0051 16.6 0.2 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation NOG1 PF06858.14 CQR57580.1 - 0.0048 16.6 0.9 0.087 12.6 0.9 2.6 1 1 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) Gtr1_RagA PF04670.12 CQR57580.1 - 0.0077 15.6 0.1 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region cobW PF02492.19 CQR57580.1 - 0.011 15.3 0.5 0.26 10.9 0.0 2.5 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 CQR57580.1 - 0.037 14.4 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 CQR57580.1 - 0.037 14.3 0.0 0.083 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.6 CQR57580.1 - 0.065 13.1 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 KH domain SRP54 PF00448.22 CQR57580.1 - 0.087 12.4 0.2 0.16 11.5 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 CQR57580.1 - 0.092 11.9 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 CQR57580.1 - 0.095 13.1 0.2 0.53 10.7 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 CQR57580.1 - 0.098 13.2 0.3 0.31 11.6 0.2 1.9 2 2 0 2 2 2 0 ABC transporter ATP_bind_1 PF03029.17 CQR57580.1 - 0.12 12.1 0.1 4.1 7.1 0.0 2.4 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.6 CQR57580.1 - 0.13 12.3 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain dCMP_cyt_deam_2 PF08211.12 CQR57581.1 - 9.7e-16 58.2 0.1 6.7e-13 49.0 0.0 2.1 2 0 0 2 2 2 2 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_1 PF00383.23 CQR57581.1 - 4.1e-14 52.3 0.2 4.8e-14 52.1 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 CQR57581.1 - 0.0041 16.8 1.5 0.59 9.7 0.6 2.0 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DAGK_prokar PF01219.19 CQR57582.1 - 2.1e-35 120.6 5.8 2.5e-35 120.4 5.8 1.1 1 0 0 1 1 1 1 Prokaryotic diacylglycerol kinase EcsB PF05975.12 CQR57582.1 - 0.022 13.6 3.7 0.026 13.4 3.7 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF4588 PF15251.6 CQR57582.1 - 0.27 11.0 0.1 0.36 10.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4588) YdjM PF04307.14 CQR57582.1 - 5.1 6.4 13.0 4.1e+02 0.2 13.0 2.6 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase UPF0054 PF02130.17 CQR57583.1 - 1.7e-45 154.0 0.3 2e-45 153.7 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 7TM-7TMR_HD PF07698.11 CQR57584.1 - 3.8e-30 105.1 31.7 6.4e-30 104.4 31.7 1.4 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase 7TMR-HDED PF07697.11 CQR57584.1 - 1.9e-29 103.4 12.4 3.5e-29 102.5 12.4 1.4 1 0 0 1 1 1 1 7TM-HD extracellular HD PF01966.22 CQR57584.1 - 2.1e-16 60.3 1.1 3.9e-16 59.4 0.2 2.0 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 CQR57584.1 - 0.0095 15.4 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 HDOD domain HD_6 PF18019.1 CQR57584.1 - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 HD domain Hemolysin_N PF12563.8 CQR57584.1 - 0.22 11.1 1.6 0.2 11.2 0.2 1.6 2 0 0 2 2 2 0 Hemolytic toxin N terminal PhoH PF02562.16 CQR57585.1 - 9.1e-95 315.9 0.0 1.1e-94 315.6 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 CQR57585.1 - 9.2e-08 32.0 0.0 1.6e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 CQR57585.1 - 1.8e-05 25.1 0.7 0.00016 22.1 0.7 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 CQR57585.1 - 0.00014 21.7 0.1 0.00035 20.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 CQR57585.1 - 0.0017 18.6 0.1 0.013 15.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 CQR57585.1 - 0.016 14.8 0.0 3 7.5 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DEAD PF00270.29 CQR57585.1 - 0.034 13.9 0.2 0.61 9.8 0.2 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase UvrD-helicase PF00580.21 CQR57585.1 - 0.099 12.1 2.8 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Parvo_NS1 PF01057.17 CQR57585.1 - 0.13 11.4 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 CQR57585.1 - 0.15 11.6 0.1 0.29 10.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain YqfD PF06898.11 CQR57586.1 - 1.3e-116 389.6 0.0 1.4e-116 389.5 0.0 1.0 1 0 0 1 1 1 1 Putative stage IV sporulation protein YqfD POTRA_1 PF08478.10 CQR57586.1 - 0.00027 21.2 0.3 0.0011 19.3 0.1 2.1 2 0 0 2 2 2 1 POTRA domain, FtsQ-type Biotin_lipoyl_2 PF13533.6 CQR57586.1 - 0.018 14.9 0.1 0.27 11.1 0.1 2.4 1 1 0 1 1 1 0 Biotin-lipoyl like YabP PF07873.11 CQR57587.1 - 3.4e-19 68.4 1.2 4.1e-19 68.1 1.2 1.1 1 0 0 1 1 1 1 YabP family CooT PF10133.9 CQR57587.1 - 0.021 15.1 0.1 0.035 14.4 0.1 1.4 1 0 0 1 1 1 0 CO dehydrogenase accessory protein CooT YdfA_immunity PF12127.8 CQR57589.1 - 7.4e-163 541.0 16.4 8.8e-163 540.8 16.4 1.0 1 0 0 1 1 1 1 SigmaW regulon antibacterial Seryl_tRNA_N PF02403.22 CQR57589.1 - 0.0091 16.2 0.8 0.017 15.3 0.8 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain NfeD PF01957.18 CQR57590.1 - 1.6e-11 44.4 3.8 8e-11 42.2 2.4 2.7 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 CQR57590.1 - 4e-07 29.3 0.4 7.5e-07 28.4 0.4 1.4 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.18 CQR57590.1 - 0.0042 17.0 3.4 0.021 14.8 0.5 3.1 3 0 0 3 3 3 1 Peptidase family S49 ECH_1 PF00378.20 CQR57590.1 - 0.13 11.5 0.9 0.24 10.7 0.9 1.3 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase CLP_protease PF00574.23 CQR57590.1 - 0.62 9.9 5.5 0.088 12.7 0.5 2.1 3 0 0 3 3 3 0 Clp protease YqeY PF09424.10 CQR57591.1 - 1.1e-55 187.7 8.3 1.2e-55 187.5 8.3 1.0 1 0 0 1 1 1 1 Yqey-like protein GatB_Yqey PF02637.18 CQR57591.1 - 0.0011 18.8 6.7 0.0067 16.3 6.7 2.1 1 1 0 1 1 1 1 GatB domain TAN PF11640.8 CQR57591.1 - 0.03 14.5 0.1 0.043 13.9 0.1 1.3 1 0 0 1 1 1 0 Telomere-length maintenance and DNA damage repair DUF3349 PF11829.8 CQR57591.1 - 0.03 15.1 2.0 0.42 11.4 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) RNA_pol_Rpb4 PF03874.16 CQR57591.1 - 0.74 10.2 5.3 1.2 9.5 5.3 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb4 Ribosomal_S21 PF01165.20 CQR57592.1 - 9.1e-21 73.3 10.9 9.6e-21 73.3 10.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S21 SVIP PF15811.5 CQR57592.1 - 1.1 9.7 7.8 0.74 10.3 2.9 2.0 1 1 1 2 2 2 0 Small VCP/p97-interacting protein HIT PF01230.23 CQR57593.1 - 2.2e-22 79.6 0.0 2.5e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 CQR57593.1 - 3.8e-20 72.5 0.0 4.4e-20 72.3 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding AAL_decarboxy PF03306.13 CQR57594.1 - 6.1e-81 270.9 0.0 6.9e-81 270.7 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase NLE PF08154.12 CQR57594.1 - 0.13 12.9 0.0 0.25 11.9 0.0 1.5 1 0 0 1 1 1 0 NLE (NUC135) domain AAA_23 PF13476.6 CQR57595.1 - 1.3e-17 64.9 13.4 1.3e-17 64.9 13.4 4.4 2 2 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 CQR57595.1 - 1.2e-14 54.3 0.0 6.1e-14 52.0 0.0 2.3 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 CQR57595.1 - 1.2e-11 44.4 0.0 5.5e-11 42.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR57595.1 - 6.6e-06 25.8 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR57595.1 - 2e-05 24.5 1.8 0.0013 18.6 0.0 2.8 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 CQR57595.1 - 0.023 15.2 7.9 0.055 14.0 0.0 4.2 4 3 0 4 4 4 0 ABC transporter Metallophos PF00149.28 CQR57596.1 - 4.2e-11 43.7 0.0 7.2e-11 43.0 0.0 1.6 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR57596.1 - 5.3e-09 36.5 0.0 4.3e-08 33.5 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SbcD_C PF12320.8 CQR57596.1 - 1.6e-07 31.6 0.0 3e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Type 5 capsule protein repressor C-terminal domain CobU PF02283.16 CQR57596.1 - 0.19 11.3 0.0 0.38 10.3 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase UvrD-helicase PF00580.21 CQR57597.1 - 1.5e-80 271.1 0.0 2.7e-80 270.2 0.0 1.4 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 CQR57597.1 - 3.4e-24 85.9 0.0 3.3e-23 82.6 0.0 2.4 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 CQR57597.1 - 3.6e-19 69.6 0.0 2.8e-18 66.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 CQR57597.1 - 1.1e-12 48.5 1.0 8.1e-12 45.6 0.0 2.9 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 CQR57597.1 - 9.9e-09 34.9 0.1 3.7e-05 23.4 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain DEAD PF00270.29 CQR57597.1 - 7.9e-05 22.5 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 CQR57597.1 - 0.002 17.9 0.0 0.0055 16.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 CQR57597.1 - 0.003 17.3 0.0 6.8 6.4 0.0 4.0 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 CQR57597.1 - 0.046 14.1 2.0 0.26 11.6 2.0 2.5 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.15 CQR57597.1 - 0.13 12.2 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF5302 PF17227.2 CQR57597.1 - 0.17 12.9 3.2 0.54 11.3 3.2 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5302) PDDEXK_1 PF12705.7 CQR57598.1 - 6.5e-54 183.5 0.0 2.6e-53 181.6 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.14 CQR57598.1 - 6.1e-09 34.7 0.0 3.4e-08 32.2 0.0 1.8 1 1 0 1 1 1 1 Exodeoxyribonuclease V, gamma subunit DDE_Tnp_1 PF01609.21 CQR57599.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR57599.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR57599.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR57599.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain PUA_3 PF17785.1 CQR57600.1 - 6.4e-25 86.7 0.0 1.6e-24 85.5 0.0 1.7 1 0 0 1 1 1 1 PUA-like domain Methyltrans_SAM PF10672.9 CQR57600.1 - 2.1e-14 53.4 0.0 0.0018 17.5 0.0 3.1 3 0 0 3 3 3 3 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 CQR57600.1 - 3.6e-08 33.4 0.0 3.1e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 Met-10+ like-protein Cons_hypoth95 PF03602.15 CQR57600.1 - 1.3e-07 31.4 0.0 2.7e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 CQR57600.1 - 8.4e-07 28.9 0.1 1.3e-05 25.1 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR57600.1 - 1.7e-06 28.6 0.1 4.9e-06 27.2 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 CQR57600.1 - 0.00017 21.1 0.0 0.00026 20.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.16 CQR57600.1 - 0.0004 19.7 0.0 0.00052 19.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 CQR57600.1 - 0.00087 18.9 0.0 0.0025 17.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 CQR57600.1 - 0.0033 18.1 0.1 0.01 16.5 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 CQR57600.1 - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PUA PF01472.20 CQR57600.1 - 0.022 14.7 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 PUA domain Methyltransf_15 PF09445.10 CQR57600.1 - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Na_Pi_cotrans PF02690.15 CQR57601.1 - 1.6e-43 148.2 29.4 2.3e-27 95.8 13.0 2.3 1 1 1 2 2 2 2 Na+/Pi-cotransporter RVT_1 PF00078.27 CQR57602.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR57602.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR57602.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase Big_2 PF02368.18 CQR57603.1 - 3.1e-18 65.4 81.9 8.8e-05 22.3 12.4 8.7 8 0 0 8 8 8 8 Bacterial Ig-like domain (group 2) RecQ5 PF06959.11 CQR57603.1 - 0.0092 16.0 0.0 0.026 14.5 0.0 1.7 2 0 0 2 2 2 1 RecQ helicase protein-like 5 (RecQ5) Big_3 PF07523.12 CQR57603.1 - 7.1 7.0 38.1 8.2 6.8 2.5 8.2 6 3 0 6 6 6 0 Bacterial Ig-like domain (group 3) NUDIX PF00293.28 CQR57604.1 - 5.4e-17 62.1 0.1 6.4e-17 61.8 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain UPF0004 PF00919.20 CQR57605.1 - 9e-27 93.0 0.0 1.8e-26 92.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 CQR57605.1 - 2.1e-25 90.0 0.0 6.1e-25 88.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily TRAM_2 PF18693.1 CQR57605.1 - 0.0049 17.0 0.0 0.017 15.3 0.0 2.0 1 0 0 1 1 1 1 TRAM domain B12-binding PF02310.19 CQR57605.1 - 0.034 14.2 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain TRAM PF01938.20 CQR57605.1 - 0.12 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 TRAM domain DsrC PF04358.13 CQR57605.1 - 0.15 12.6 0.1 0.64 10.5 0.0 2.0 2 0 0 2 2 2 0 DsrC like protein Methyltrans_RNA PF04452.14 CQR57606.1 - 3.5e-68 229.3 0.0 4e-68 229.1 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase RL PF17797.1 CQR57606.1 - 0.12 12.3 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 RL domain Peptidase_M50 PF02163.22 CQR57607.1 - 2.6e-12 46.5 10.1 1.7e-07 30.8 0.2 2.9 1 1 1 2 2 2 2 Peptidase family M50 DUF4293 PF14126.6 CQR57607.1 - 0.91 9.8 4.9 0.79 10.0 0.5 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4293) TrbC PF04956.13 CQR57607.1 - 1.6 9.0 9.5 0.5 10.6 0.4 2.7 3 1 0 3 3 3 0 TrbC/VIRB2 family DUF4282 PF14110.6 CQR57607.1 - 2.3 9.0 9.6 0.9 10.3 0.5 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4282) PrmA PF06325.13 CQR57608.1 - 5.6e-95 318.1 0.0 2.2e-74 250.5 0.0 2.0 2 0 0 2 2 2 2 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 CQR57608.1 - 2.9e-08 33.5 0.1 5e-08 32.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 CQR57608.1 - 2.2e-07 30.8 0.0 3.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 CQR57608.1 - 1.1e-06 28.6 0.0 2.3e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR57608.1 - 6.4e-05 23.6 0.1 0.00044 20.9 0.1 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR57608.1 - 0.00011 22.0 0.0 0.0003 20.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 CQR57608.1 - 0.00014 21.6 0.0 0.00025 20.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.19 CQR57608.1 - 0.00068 19.5 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 CQR57608.1 - 0.0013 19.4 0.0 0.041 14.5 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57608.1 - 0.0048 16.7 0.0 0.0085 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 CQR57608.1 - 0.01 15.1 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.9 CQR57608.1 - 0.014 15.1 0.1 0.026 14.3 0.1 1.3 1 0 0 1 1 1 0 Lysine methyltransferase TrmK PF04816.12 CQR57608.1 - 0.015 14.9 0.1 0.023 14.2 0.1 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase CMAS PF02353.20 CQR57608.1 - 0.13 11.5 0.0 0.48 9.7 0.0 1.8 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Adenine_glyco PF03352.13 CQR57609.1 - 4.8e-83 277.2 0.0 5.7e-83 277.0 0.0 1.0 1 0 0 1 1 1 1 Methyladenine glycosylase HhH-GPD PF00730.25 CQR57609.1 - 0.004 17.6 0.0 0.0054 17.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF1409 PF07197.12 CQR57609.1 - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1409) DUF4179 PF13786.6 CQR57610.1 - 5.1e-14 52.5 0.1 1.1e-13 51.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4179) DUF5643 PF18705.1 CQR57610.1 - 0.86 9.6 11.5 3.1 7.8 0.0 3.9 3 1 1 5 5 5 0 Family of unknown function (DUF5643) Sigma70_r2 PF04542.14 CQR57611.1 - 4.8e-14 51.9 0.1 7e-14 51.3 0.1 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR57611.1 - 1.9e-11 43.5 1.2 1.4e-10 40.6 0.1 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR57611.1 - 4.5e-10 38.9 0.0 7.7e-10 38.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR57611.1 - 0.047 13.6 0.1 0.091 12.6 0.1 1.5 1 1 0 1 1 1 0 ECF sigma factor UPF0122 PF04297.14 CQR57611.1 - 0.071 13.3 0.4 0.77 10.0 0.0 2.3 2 1 1 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like MCPsignal PF00015.21 CQR57612.1 - 5.7e-28 97.9 18.2 1.9e-27 96.2 17.5 2.0 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 CQR57612.1 - 6.3e-13 48.9 0.0 6.7e-11 42.4 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 CQR57612.1 - 8.5e-09 35.6 0.0 1.5e-07 31.6 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 CQR57612.1 - 1.8e-07 31.3 0.0 3.7e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 CQR57612.1 - 0.0005 20.1 0.0 0.0028 17.6 0.0 2.2 2 1 0 2 2 2 1 PAS fold BLOC1_2 PF10046.9 CQR57612.1 - 0.00077 19.7 6.1 0.081 13.2 0.1 3.3 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 CQR57612.1 - 0.0015 18.7 11.6 0.0086 16.3 1.0 3.5 2 2 0 2 2 2 1 Bacterial protein of unknown function (DUF948) HisKA_3 PF07730.13 CQR57612.1 - 0.0028 18.1 8.2 0.21 12.1 0.1 3.8 2 1 1 4 4 4 1 Histidine kinase Cytochrom_B562 PF07361.11 CQR57612.1 - 0.012 16.3 0.6 0.012 16.3 0.6 2.8 1 1 0 2 2 2 0 Cytochrome b562 Laminin_II PF06009.12 CQR57612.1 - 0.013 15.5 0.9 0.013 15.5 0.9 2.9 2 1 0 2 2 2 0 Laminin Domain II Apolipoprotein PF01442.18 CQR57612.1 - 0.013 15.3 7.5 0.047 13.6 2.1 2.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain EzrA PF06160.12 CQR57612.1 - 0.014 13.6 0.5 0.19 9.9 0.0 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF3958 PF13125.6 CQR57612.1 - 0.017 15.3 1.3 11 6.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3958) WXG100 PF06013.12 CQR57612.1 - 0.064 13.5 10.1 1.3 9.3 0.2 4.0 2 1 1 3 3 3 0 Proteins of 100 residues with WXG sCache_3_3 PF17202.4 CQR57612.1 - 0.064 13.7 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Single cache domain 3 DUF3450 PF11932.8 CQR57612.1 - 0.069 12.4 10.8 0.11 11.8 2.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 CQR57612.1 - 0.08 11.8 7.2 0.084 11.7 1.1 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.12 CQR57612.1 - 0.093 12.8 10.2 0.25 11.4 1.5 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Filament PF00038.21 CQR57612.1 - 0.14 11.7 4.6 0.29 10.7 0.6 2.3 1 1 1 2 2 2 0 Intermediate filament protein COG6 PF06419.11 CQR57612.1 - 0.14 10.3 5.0 0.1 10.8 1.1 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 DUF812 PF05667.11 CQR57612.1 - 0.17 10.8 6.1 0.39 9.6 0.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Syntaxin_2 PF14523.6 CQR57612.1 - 0.19 12.1 6.8 27 5.2 6.8 2.5 1 1 0 1 1 1 0 Syntaxin-like protein DUF4795 PF16043.5 CQR57612.1 - 0.19 11.3 4.5 0.96 9.0 4.5 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) RmuC PF02646.16 CQR57612.1 - 0.21 10.7 5.8 0.18 10.9 0.6 2.3 1 1 0 2 2 2 0 RmuC family Fzo_mitofusin PF04799.13 CQR57612.1 - 0.35 10.4 3.5 1 8.9 0.2 2.3 2 0 0 2 2 2 0 fzo-like conserved region Trimer_CC PF08954.11 CQR57612.1 - 0.36 10.4 2.7 14 5.3 0.0 2.9 2 1 1 3 3 3 0 Trimerisation motif Alanine_zipper PF11839.8 CQR57612.1 - 0.47 10.8 6.9 25 5.3 0.5 3.3 3 0 0 3 3 3 0 Alanine-zipper, major outer membrane lipoprotein ISG65-75 PF11727.8 CQR57612.1 - 0.56 9.4 3.8 0.71 9.0 0.5 2.2 1 1 0 2 2 2 0 Invariant surface glycoprotein Vps51 PF08700.11 CQR57612.1 - 0.62 10.2 5.7 2.4 8.3 0.1 3.4 3 1 0 3 3 3 0 Vps51/Vps67 DHR10 PF18595.1 CQR57612.1 - 0.86 9.7 8.0 0.39 10.8 0.3 3.0 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain DUF2203 PF09969.9 CQR57612.1 - 0.96 10.2 7.0 7.1 7.4 0.6 2.7 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) CLZ PF16526.5 CQR57612.1 - 1.1 9.6 7.5 10 6.6 0.3 3.4 4 0 0 4 4 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ApoLp-III PF07464.11 CQR57612.1 - 1.3 9.1 9.6 2.8 8.0 1.7 2.8 1 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Flagellin_N PF00669.20 CQR57612.1 - 1.3 9.1 11.6 0.55 10.3 6.5 2.3 2 0 0 2 2 2 0 Bacterial flagellin N-terminal helical region Sec34 PF04136.15 CQR57612.1 - 2 8.3 4.9 1.9 8.3 0.0 2.8 3 1 0 3 3 2 0 Sec34-like family FlaC_arch PF05377.11 CQR57612.1 - 3.6 8.0 12.7 8.8 6.8 0.3 4.4 3 1 2 5 5 5 0 Flagella accessory protein C (FlaC) COG2 PF06148.11 CQR57612.1 - 4.5 7.4 7.3 2.9 8.0 1.6 3.0 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.12 CQR57612.1 - 8 7.2 6.1 16 6.2 0.3 3.1 2 1 0 2 2 2 0 SlyX SLH PF00395.20 CQR57613.1 - 4.9e-29 100.1 3.0 1.6e-09 37.7 0.0 3.6 3 0 0 3 3 3 3 S-layer homology domain BslA PF17735.1 CQR57613.1 - 7.6e-13 48.5 1.1 4.4e-12 46.0 0.2 2.7 3 0 0 3 3 3 1 Biofilm surface layer A DUF4625 PF15418.6 CQR57613.1 - 2.8e-08 34.1 0.6 0.0002 21.6 0.0 3.0 3 0 0 3 3 3 2 Domain of unknown function (DUF4625) Y_Y_Y PF07495.13 CQR57613.1 - 8.3e-05 22.5 0.0 0.5 10.4 0.0 2.8 2 0 0 2 2 2 2 Y_Y_Y domain SdrD_B PF17210.3 CQR57613.1 - 0.0091 16.2 0.6 6.6 7.0 0.2 3.0 2 0 0 2 2 2 2 SdrD B-like domain Filamin PF00630.19 CQR57613.1 - 0.016 16.1 0.0 0.17 12.7 0.0 2.7 2 1 1 3 3 3 0 Filamin/ABP280 repeat DUF4998 PF16389.5 CQR57613.1 - 0.05 13.2 1.8 1.7 8.2 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function EF-hand_6 PF13405.6 CQR57613.1 - 0.097 12.7 0.0 15 5.9 0.0 2.8 2 0 0 2 2 2 0 EF-hand domain Cytomega_UL20A PF05984.12 CQR57613.1 - 0.3 11.4 5.1 3.2 8.1 0.0 3.2 3 0 0 3 3 3 0 Cytomegalovirus UL20A protein Trypan_PARP PF05887.11 CQR57613.1 - 0.6 10.1 55.6 3 7.8 17.2 2.7 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) DUF2935 PF11155.8 CQR57614.1 - 1.4e-63 212.7 2.5 4.7e-32 110.9 0.4 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF2935) YfhD PF14151.6 CQR57617.1 - 1e-08 35.2 6.3 1.1e-08 35.0 6.3 1.0 1 0 0 1 1 1 1 YfhD-like protein Peptidase_S8 PF00082.22 CQR57619.1 - 1.9e-59 201.4 3.6 1.9e-59 201.4 3.6 2.1 2 0 0 2 2 2 1 Subtilase family SLH PF00395.20 CQR57619.1 - 6e-35 119.0 6.0 5.5e-12 45.5 0.0 4.6 4 0 0 4 4 4 3 S-layer homology domain PA PF02225.22 CQR57619.1 - 9.2e-08 32.0 2.4 1e-07 31.9 0.1 2.3 2 0 0 2 2 2 1 PA domain Inhibitor_I9 PF05922.16 CQR57619.1 - 7.6e-05 23.3 0.1 0.00025 21.7 0.0 2.0 2 0 0 2 2 2 1 Peptidase inhibitor I9 DnaJ_C PF01556.18 CQR57620.1 - 2e-43 148.0 0.1 2.7e-43 147.6 0.1 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 CQR57620.1 - 1.6e-26 92.2 3.6 2.8e-26 91.4 3.6 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 CQR57620.1 - 1e-13 51.4 18.3 2.1e-13 50.4 18.3 1.6 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 CQR57620.1 - 0.07 13.1 17.6 1.2 9.1 3.8 3.2 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein RPT PF13446.6 CQR57620.1 - 0.19 11.7 0.1 0.5 10.3 0.0 1.7 2 0 0 2 2 2 0 A repeated domain in UCH-protein DUF5351 PF17302.2 CQR57620.1 - 0.55 10.5 25.4 1.3 9.3 0.9 4.5 4 0 0 4 4 4 0 Family of unknown function (DUF5351) SRR PF07709.11 CQR57620.1 - 1.4 9.6 2.9 3.6 8.4 0.2 2.8 3 0 0 3 3 3 0 Seven Residue Repeat zf-RING_10 PF16685.5 CQR57620.1 - 3.6 7.8 5.7 7.9 6.7 4.0 2.1 1 1 1 2 2 2 0 zinc RING finger of MSL2 FdhE PF04216.12 CQR57620.1 - 6.3 6.6 7.5 1.5 8.6 4.1 1.6 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation HSP70 PF00012.20 CQR57621.1 - 6.5e-247 820.5 18.5 1.7e-216 720.0 12.5 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 CQR57621.1 - 7.1e-22 77.6 4.0 1.4e-21 76.6 4.0 1.5 1 0 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.16 CQR57621.1 - 0.016 14.9 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 CQR57621.1 - 0.13 12.7 5.1 0.21 12.0 0.9 3.3 2 1 0 2 2 2 0 Cell division protein FtsA GrpE PF01025.19 CQR57622.1 - 3.7e-52 176.3 6.5 5.3e-52 175.8 6.5 1.3 1 1 0 1 1 1 1 GrpE PDCD2_C PF04194.13 CQR57622.1 - 0.081 13.0 1.6 0.12 12.4 1.6 1.3 1 0 0 1 1 1 0 Programmed cell death protein 2, C-terminal putative domain HrcA PF01628.21 CQR57623.1 - 3.4e-67 226.6 1.1 4.3e-67 226.3 1.1 1.1 1 0 0 1 1 1 1 HrcA protein C terminal domain HrcA_DNA-bdg PF03444.15 CQR57623.1 - 1e-05 25.1 0.0 2.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LexA_DNA_bind PF01726.16 CQR57623.1 - 0.01 15.6 0.0 0.035 13.9 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain BCIP PF13862.6 CQR57623.1 - 0.035 13.9 0.6 0.083 12.7 0.4 1.6 1 1 0 1 1 1 0 p21-C-terminal region-binding protein DUF3091 PF11291.8 CQR57623.1 - 0.048 13.8 0.1 0.091 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3091) HTH_IclR PF09339.10 CQR57623.1 - 0.12 12.2 0.0 11 5.9 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_11 PF08279.12 CQR57623.1 - 0.16 11.9 0.0 3 7.9 0.0 2.7 2 0 0 2 2 2 0 HTH domain adh_short PF00106.25 CQR57624.1 - 9.5e-16 57.8 0.3 3.8e-10 39.5 0.5 2.2 1 1 1 2 2 2 2 short chain dehydrogenase adh_short_C2 PF13561.6 CQR57624.1 - 5.9e-08 32.6 0.1 0.0007 19.2 0.2 2.1 1 1 1 2 2 2 2 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR57624.1 - 0.0015 18.5 0.2 0.0021 18.0 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR57624.1 - 0.0021 17.6 0.1 0.003 17.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 CQR57624.1 - 0.072 12.1 0.1 0.1 11.6 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Mycoplasma_p37 PF06646.11 CQR57625.1 - 0.091 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 High affinity transport system protein p37 Acetyltransf_1 PF00583.25 CQR57626.1 - 1.4e-09 38.2 0.0 2e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR57626.1 - 2.3e-07 30.8 0.0 3.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR57626.1 - 3.1e-06 27.5 0.1 5.3e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR57626.1 - 0.0063 17.2 0.0 0.011 16.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain RNase_Zc3h12a PF11977.8 CQR57626.1 - 0.016 15.0 0.1 0.035 13.9 0.0 1.6 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain Acetyltransf_CG PF14542.6 CQR57626.1 - 0.023 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Radical_SAM PF04055.21 CQR57627.1 - 4.8e-26 92.1 0.0 6.5e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 CQR57627.1 - 2e-17 63.0 0.3 3.5e-17 62.2 0.3 1.4 1 0 0 1 1 1 1 HemN C-terminal domain GTP_EFTU PF00009.27 CQR57628.1 - 1.1e-54 184.9 0.1 1.7e-54 184.4 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 CQR57628.1 - 7.1e-53 177.3 1.4 1.4e-52 176.4 1.4 1.5 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 CQR57628.1 - 2.7e-27 94.6 0.0 6.9e-27 93.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 CQR57628.1 - 1.7e-08 34.7 3.6 5.5e-08 33.1 3.6 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 EFG_II PF14492.6 CQR57628.1 - 0.00014 21.9 0.0 0.00059 19.9 0.0 2.0 1 1 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 CQR57628.1 - 0.00015 21.8 0.0 0.00032 20.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 CQR57628.1 - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 CQR57628.1 - 0.031 13.7 0.0 0.083 12.3 0.0 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit RF3_C PF16658.5 CQR57628.1 - 0.047 13.5 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain MMR_HSR1_Xtn PF16897.5 CQR57628.1 - 0.1 12.6 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SpoIIP PF07454.11 CQR57630.1 - 1.2e-75 254.4 0.0 1.5e-75 254.1 0.0 1.1 1 0 0 1 1 1 1 Stage II sporulation protein P (SpoIIP) Amidase_3 PF01520.18 CQR57630.1 - 4e-07 30.3 0.1 5.9e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase Peptidase_A25 PF03418.14 CQR57632.1 - 6.3e-124 413.5 3.8 1.2e-97 327.0 0.6 2.0 1 1 1 2 2 2 2 Germination protease DUF1256 PF06866.11 CQR57632.1 - 0.00028 20.4 0.2 0.38 10.1 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1256) DUF190 PF02641.15 CQR57632.1 - 0.11 12.9 0.1 0.21 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized ACR, COG1993 Ribosomal_S20p PF01649.18 CQR57633.1 - 2.2e-27 95.5 14.9 2.4e-27 95.4 14.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 SNARE PF05739.19 CQR57633.1 - 0.27 11.3 2.1 0.46 10.5 0.2 2.2 2 1 0 2 2 2 0 SNARE domain ORF6C PF10552.9 CQR57633.1 - 0.65 10.1 4.7 1.5 8.9 0.6 2.0 1 1 1 2 2 2 0 ORF6C domain DNA_pol3_delta PF06144.13 CQR57634.1 - 9.2e-34 116.7 0.0 1.5e-33 116.0 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_delta2 PF13177.6 CQR57634.1 - 0.19 11.5 0.3 1.4 8.7 0.0 2.4 2 1 1 3 3 3 0 DNA polymerase III, delta subunit zf-HC2 PF13490.6 CQR57635.1 - 2e-09 37.5 1.0 3.8e-09 36.6 1.0 1.5 1 0 0 1 1 1 1 Putative zinc-finger Toxin-deaminase PF14424.6 CQR57635.1 - 0.044 13.9 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases Sigma70_r4_2 PF08281.12 CQR57636.1 - 1.3e-18 66.4 0.1 2.7e-18 65.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR57636.1 - 1e-13 50.6 0.0 2.2e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR57636.1 - 1.3e-13 50.5 0.1 4.4e-13 48.8 0.1 2.0 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 CQR57636.1 - 1.7e-05 24.8 0.3 7.7e-05 22.6 0.3 1.9 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 CQR57636.1 - 0.0016 18.1 0.0 0.028 14.2 0.0 2.5 1 1 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 CQR57636.1 - 0.0039 17.0 0.0 0.0099 15.7 0.0 1.6 1 1 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) GerE PF00196.19 CQR57636.1 - 0.0048 16.4 0.0 0.0098 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_16 PF12645.7 CQR57636.1 - 0.01 15.8 0.7 0.041 13.9 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.14 CQR57636.1 - 0.019 15.2 0.5 0.058 13.6 0.1 1.9 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2795 PF11387.8 CQR57636.1 - 0.025 14.8 0.1 0.47 10.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) HTH_40 PF14493.6 CQR57636.1 - 0.051 14.0 0.1 1 9.9 0.0 2.7 2 2 1 3 3 3 0 Helix-turn-helix domain SUKH-3 PF14433.6 CQR57636.1 - 0.14 12.6 0.0 0.19 12.2 0.0 1.2 1 0 0 1 1 1 0 SUKH-3 immunity protein Vir_act_alpha_C PF10400.9 CQR57636.1 - 0.18 12.5 1.2 29 5.4 0.0 2.7 3 0 0 3 3 3 0 Virulence activator alpha C-term Aldolase PF01081.19 CQR57637.1 - 4.1e-44 150.3 0.6 4.8e-44 150.1 0.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase PfkB PF00294.24 CQR57638.1 - 4.1e-62 210.2 0.0 4.6e-62 210.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR57638.1 - 0.12 11.8 0.0 0.46 9.8 0.0 1.8 2 1 0 2 2 2 0 Phosphomethylpyrimidine kinase Peripla_BP_3 PF13377.6 CQR57639.1 - 3.9e-34 118.4 0.2 9.8e-33 113.8 0.1 2.1 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR57639.1 - 1.5e-22 80.3 0.1 2e-22 80.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR57639.1 - 7.5e-22 76.9 0.2 2.4e-20 72.0 0.1 2.8 3 0 0 3 3 3 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR57639.1 - 3e-10 40.1 0.0 4.4e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR57639.1 - 3.8e-05 23.6 0.0 9.4e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR57639.1 - 8.9e-05 22.4 0.4 0.00022 21.2 0.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain SpoIIID PF12116.8 CQR57639.1 - 0.00076 19.5 0.2 0.0018 18.3 0.1 1.7 2 0 0 2 2 1 1 Stage III sporulation protein D HTH_40 PF14493.6 CQR57639.1 - 0.0023 18.4 0.1 0.0083 16.6 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain IF2_N PF04760.15 CQR57639.1 - 0.0026 17.5 0.4 0.32 10.9 0.1 3.3 2 1 1 3 3 3 1 Translation initiation factor IF-2, N-terminal region HTH_10 PF04967.12 CQR57639.1 - 0.0034 17.1 0.0 0.0096 15.7 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AraC PF00165.23 CQR57639.1 - 0.0037 17.3 0.0 0.22 11.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_31 PF13560.6 CQR57639.1 - 0.0086 16.4 0.0 0.024 15.0 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_17 PF12728.7 CQR57639.1 - 0.0094 16.1 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 CQR57639.1 - 0.011 15.2 0.0 0.03 13.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_26 PF13443.6 CQR57639.1 - 0.02 15.3 0.0 0.047 14.1 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TetR_N PF00440.23 CQR57639.1 - 0.029 14.2 0.0 0.073 12.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_IclR PF09339.10 CQR57639.1 - 0.041 13.7 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 CQR57639.1 - 0.042 13.7 0.4 0.24 11.3 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 CQR57639.1 - 0.059 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 CQR57639.1 - 0.087 12.7 0.0 0.33 10.9 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 CQR57639.1 - 0.099 12.2 0.0 0.46 10.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_6 PF01418.17 CQR57639.1 - 0.11 12.5 0.1 0.41 10.7 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family Peripla_BP_3 PF13377.6 CQR57640.1 - 2.9e-31 109.0 0.0 5.2e-31 108.2 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR57640.1 - 1.1e-11 44.7 0.0 1.6e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR57640.1 - 1.1e-07 31.6 0.4 2.4e-07 30.4 0.2 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, lacI family Crp PF00325.20 CQR57640.1 - 0.003 17.2 0.0 0.0067 16.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family MarR_2 PF12802.7 CQR57640.1 - 0.0038 17.1 0.0 0.073 13.0 0.0 2.8 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.12 CQR57640.1 - 0.0043 16.8 0.3 0.15 11.9 0.0 2.6 1 1 2 3 3 3 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 CQR57640.1 - 0.0062 16.5 0.0 0.029 14.3 0.0 2.1 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR57640.1 - 0.056 12.9 0.0 0.25 10.8 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 CQR57640.1 - 0.079 12.7 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 CQR57640.1 - 0.11 12.7 0.3 0.99 9.7 0.2 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain IF2_N PF04760.15 CQR57640.1 - 0.12 12.2 0.0 0.31 10.9 0.0 1.8 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_23 PF13384.6 CQR57640.1 - 0.14 12.0 0.0 0.41 10.5 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.22 CQR57640.1 - 0.15 12.2 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.6 CQR57640.1 - 0.15 11.6 0.1 2.2 7.9 0.0 2.4 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_35 PF13693.6 CQR57640.1 - 0.19 11.8 0.1 0.46 10.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ABC_membrane PF00664.23 CQR57641.1 - 1.5e-36 126.5 18.1 1.9e-36 126.1 18.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR57641.1 - 3.2e-31 108.7 0.0 5.9e-31 107.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR57641.1 - 1e-05 25.1 0.5 0.0016 17.9 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 CQR57641.1 - 0.0043 17.2 0.1 0.0071 16.5 0.1 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 CQR57641.1 - 0.033 14.6 0.5 0.1 13.0 0.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CQR57641.1 - 0.047 13.4 0.6 0.11 12.2 0.6 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR57641.1 - 0.059 13.6 0.1 0.2 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR57641.1 - 0.095 12.8 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase CitF PF04223.12 CQR57641.1 - 0.1 11.5 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) AAA_25 PF13481.6 CQR57641.1 - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrkA_TMD PF18613.1 CQR57641.1 - 0.13 11.7 2.1 0.29 10.6 2.1 1.5 1 0 0 1 1 1 0 Tyrosine kinase receptor A trans-membrane domain AAA_23 PF13476.6 CQR57641.1 - 0.43 11.0 0.9 0.87 10.1 0.2 1.7 2 0 0 2 2 2 0 AAA domain ABC_membrane PF00664.23 CQR57642.1 - 9.6e-52 176.3 12.8 1.5e-51 175.7 12.8 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR57642.1 - 3.2e-31 108.7 0.0 5.1e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR57642.1 - 4.3e-06 26.3 0.0 1.3e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR57642.1 - 0.0025 17.7 0.0 0.0051 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR57642.1 - 0.006 17.0 0.1 0.012 16.0 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain DLIC PF05783.11 CQR57642.1 - 0.014 14.2 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_29 PF13555.6 CQR57642.1 - 0.034 13.9 0.1 0.12 12.1 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR57642.1 - 0.04 14.2 0.2 0.22 11.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 CQR57642.1 - 0.041 13.7 2.1 1.8 8.3 0.9 2.4 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR57642.1 - 0.043 13.5 0.0 0.043 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 CQR57642.1 - 0.046 13.4 0.1 0.1 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR57642.1 - 0.097 13.2 0.3 0.097 13.2 0.3 1.7 2 0 0 2 2 2 0 AAA domain Peptidase_C5 PF00770.18 CQR57642.1 - 0.13 11.9 0.5 0.28 10.8 0.5 1.5 1 0 0 1 1 1 0 Adenovirus endoprotease MFS_1 PF07690.16 CQR57644.1 - 2.3e-06 26.8 5.2 2.7e-06 26.6 5.2 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily OAD_gamma PF04277.13 CQR57644.1 - 0.42 11.2 5.0 10 6.8 1.2 2.3 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain MWFE PF15879.5 CQR57644.1 - 0.45 10.7 2.9 4.6 7.5 0.7 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase MWFE subunit Gp_dh_C PF02800.20 CQR57645.1 - 1.3e-59 200.3 0.1 1.9e-59 199.7 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 CQR57645.1 - 7.1e-37 125.8 1.9 9.3e-37 125.4 0.2 2.1 3 1 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 CQR57645.1 - 0.0036 17.4 2.4 0.0061 16.7 0.5 2.4 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 CQR57645.1 - 0.011 15.1 0.1 0.024 14.0 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HATPase_c_4 PF13749.6 CQR57646.1 - 0.045 13.9 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent DNA helicase recG C-terminal TetR_N PF00440.23 CQR57647.1 - 7.8e-15 54.4 0.2 2.1e-14 53.0 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_13 PF16925.5 CQR57647.1 - 1.6e-06 28.0 0.0 2.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 CQR57647.1 - 0.00042 20.4 0.0 0.00087 19.4 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 CQR57647.1 - 0.0032 17.8 0.0 0.0045 17.3 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 CQR57647.1 - 0.004 17.3 0.0 0.0086 16.2 0.0 1.5 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region TetR_C_5 PF08360.11 CQR57647.1 - 0.0067 16.6 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 QacR-like protein, C-terminal region TetR_C_24 PF17932.1 CQR57647.1 - 0.0091 16.2 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 CQR57647.1 - 0.0098 16.0 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 CQR57647.1 - 0.029 14.6 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 CQR57647.1 - 0.076 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Competence PF03772.16 CQR57648.1 - 3.2e-62 210.3 34.9 3.2e-62 210.3 34.9 1.8 2 0 0 2 2 2 1 Competence protein DUF4131 PF13567.6 CQR57648.1 - 5.5e-25 87.9 0.2 5.5e-25 87.9 0.2 4.6 5 1 1 6 6 6 1 Domain of unknown function (DUF4131) Lactamase_B PF00753.27 CQR57648.1 - 8.5e-17 61.8 0.8 9.6e-16 58.4 0.8 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR57648.1 - 3.7e-10 39.7 0.0 6.4e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 CQR57648.1 - 0.0032 17.4 0.0 0.0073 16.2 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain dCMP_cyt_deam_1 PF00383.23 CQR57649.1 - 2.4e-22 78.7 0.1 6.4e-22 77.3 0.1 1.6 1 1 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 CQR57649.1 - 1.5e-14 53.9 0.0 2.2e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase XOO_2897-deam PF14440.6 CQR57649.1 - 0.0011 19.1 0.1 0.0018 18.4 0.1 1.3 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.6 CQR57649.1 - 0.017 15.2 0.3 0.41 10.7 0.3 2.3 1 1 0 1 1 1 0 Bd3614-like deaminase APOBEC_N PF08210.11 CQR57649.1 - 0.023 14.6 0.2 0.037 13.9 0.2 1.3 1 0 0 1 1 1 0 APOBEC-like N-terminal domain SNAD4 PF18750.1 CQR57649.1 - 0.023 14.8 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 OTT_1508_deam PF14441.6 CQR57649.1 - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 OTT_1508-like deaminase NAD1 PF18778.1 CQR57649.1 - 0.12 12.5 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 HHH_3 PF12836.7 CQR57650.1 - 1.1e-21 76.8 0.0 2e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 CQR57650.1 - 6.1e-11 41.6 0.1 3e-06 26.8 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.6 CQR57650.1 - 5.5e-06 26.9 0.6 0.0069 17.0 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain IMS_HHH PF11798.8 CQR57650.1 - 0.00014 22.0 0.4 0.18 12.2 0.1 2.4 2 0 0 2 2 2 2 IMS family HHH motif T2SSK PF03934.13 CQR57650.1 - 0.00027 20.4 0.0 0.11 11.9 0.0 2.3 1 1 1 2 2 2 2 Type II secretion system (T2SS), protein K HHH_6 PF14579.6 CQR57650.1 - 0.0062 16.8 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_8 PF14716.6 CQR57650.1 - 0.022 15.1 0.5 9.6 6.7 0.1 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix domain HHH_2 PF12826.7 CQR57650.1 - 0.086 12.9 0.0 2.4 8.3 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix motif F420_oxidored PF03807.17 CQR57651.1 - 2.8e-20 72.7 0.0 5.8e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.6 CQR57651.1 - 4.2e-18 65.5 0.0 6.4e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.15 CQR57651.1 - 3.1e-07 30.7 0.0 5.9e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 CQR57651.1 - 0.00025 21.1 0.0 0.00045 20.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 CQR57651.1 - 0.0044 16.7 0.0 0.017 14.8 0.0 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 CQR57651.1 - 0.013 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain 2-Hacid_dh_C PF02826.19 CQR57651.1 - 0.049 13.0 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.20 CQR57651.1 - 0.069 13.3 0.0 1.7 8.8 0.0 2.3 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus tRNA-synt_1 PF00133.22 CQR57652.1 - 1.4e-70 238.3 0.3 2.1e-49 168.3 0.3 3.6 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 CQR57652.1 - 1.1e-65 220.7 0.0 1.6e-65 220.1 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 CQR57652.1 - 3.1e-28 98.6 0.9 3.1e-18 65.7 0.0 4.6 4 1 1 5 5 5 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 CQR57652.1 - 4.4e-19 68.9 0.8 1.5e-18 67.2 0.8 1.8 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 CQR57652.1 - 4.2e-05 23.0 0.0 0.042 13.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 CQR57652.1 - 0.014 14.3 0.0 0.032 13.2 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (K) UPF0444 PF15475.6 CQR57654.1 - 0.073 13.3 3.0 0.25 11.6 2.2 1.9 1 1 1 2 2 2 0 Transmembrane protein C12orf23, UPF0444 MCPsignal PF00015.21 CQR57654.1 - 0.95 9.3 9.7 12 5.7 0.1 2.9 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Cu-oxidase_4 PF02578.15 CQR57654.1 - 1.2 8.7 4.8 6.2 6.4 0.7 2.0 1 1 1 2 2 2 0 Multi-copper polyphenol oxidoreductase laccase CPBP PF02517.16 CQR57655.1 - 2.7e-15 56.5 8.0 2.7e-15 56.5 8.0 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease HTH_18 PF12833.7 CQR57656.1 - 4.8e-19 68.4 0.0 9.5e-19 67.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57656.1 - 1.8e-05 24.7 0.0 0.00042 20.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family AI-2E_transport PF01594.16 CQR57657.1 - 1.5e-74 251.1 35.7 1.9e-74 250.8 35.7 1.1 1 0 0 1 1 1 1 AI-2E family transporter CoA_binding_3 PF13727.6 CQR57657.1 - 0.075 13.0 1.9 0.29 11.1 1.2 2.2 2 0 0 2 2 2 0 CoA-binding domain Na_K-ATPase PF00287.18 CQR57657.1 - 0.26 10.4 0.0 0.44 9.7 0.0 1.3 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain Glyco_hydro_16 PF00722.21 CQR57658.1 - 1.6e-42 145.0 3.5 1.9e-42 144.8 3.5 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 SBP_bac_1 PF01547.25 CQR57661.1 - 1.5e-14 54.7 4.1 2.4e-14 54.0 4.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57661.1 - 3.6e-11 43.4 0.6 3.6e-11 43.4 0.6 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR57662.1 - 1.8e-21 76.3 0.8 6e-21 74.6 0.8 1.9 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.26 CQR57662.1 - 1.9e-08 34.8 0.2 6.6e-08 33.0 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR57662.1 - 7.3e-06 26.3 0.0 2e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 CQR57662.1 - 0.00084 19.3 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR57662.1 - 0.0014 18.5 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR57662.1 - 0.049 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 GHKL domain FAM91_C PF14648.6 CQR57662.1 - 0.049 12.5 0.3 0.099 11.5 0.3 1.4 1 0 0 1 1 1 0 FAM91 C-terminus Response_reg PF00072.24 CQR57663.1 - 4.7e-27 94.4 0.0 8.1e-27 93.6 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57663.1 - 9.4e-16 57.9 0.0 3.4e-15 56.1 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57663.1 - 1.8e-13 50.2 0.1 5.2e-09 36.0 0.0 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Glyco_hydro_36 PF17167.4 CQR57664.1 - 1.4e-42 145.8 0.1 8.1e-42 143.4 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 CQR57664.1 - 3.7e-09 36.4 0.0 6.3e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 36 GDE_C PF06202.14 CQR57664.1 - 0.004 16.2 0.0 0.17 10.8 0.0 2.2 2 0 0 2 2 2 2 Amylo-alpha-1,6-glucosidase BPD_transp_1 PF00528.22 CQR57665.1 - 4.3e-17 62.4 21.0 4.3e-17 62.4 21.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57666.1 - 7.6e-23 81.2 20.5 7.6e-23 81.2 20.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR57667.1 - 5.9e-41 141.1 11.6 1.1e-40 140.3 11.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR57667.1 - 1.4e-39 137.0 17.7 2.1e-39 136.3 17.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57667.1 - 0.0011 18.5 0.1 0.0044 16.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR57667.1 - 0.022 14.5 0.0 3.3 7.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein zf-RRPl_C4 PF17026.5 CQR57668.1 - 0.0077 16.3 0.1 0.0082 16.2 0.1 1.1 1 0 0 1 1 1 1 Putative ribonucleoprotein zinc-finger pf C4 type RPA_interact_C PF14768.6 CQR57668.1 - 0.091 13.3 0.1 0.11 13.1 0.1 1.1 1 0 0 1 1 1 0 Replication protein A interacting C-terminal TF_Zn_Ribbon PF08271.12 CQR57668.1 - 0.3 10.6 3.7 0.56 9.8 3.7 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RING_7 PF02591.15 CQR57668.1 - 0.45 10.7 2.4 23 5.2 0.1 2.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain PRC PF05239.16 CQR57669.1 - 8.5e-19 67.4 2.3 1.2e-09 38.1 0.0 2.1 2 0 0 2 2 2 2 PRC-barrel domain Bac_chlorC PF02043.17 CQR57669.1 - 0.017 15.1 0.1 0.068 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacteriochlorophyll C binding protein Adhes-Ig_like PF09085.10 CQR57669.1 - 0.17 12.1 0.0 0.29 11.3 0.0 1.3 1 0 0 1 1 1 0 Adhesion molecule, immunoglobulin-like Aminotran_5 PF00266.19 CQR57670.1 - 1.7e-73 247.7 0.1 2e-73 247.5 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 CQR57670.1 - 9.2e-09 35.0 0.1 1.3e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 CQR57670.1 - 0.00028 19.5 0.0 0.00048 18.8 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 CQR57670.1 - 0.0014 18.1 0.9 0.0045 16.3 0.9 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 CQR57670.1 - 0.023 13.4 0.0 0.031 13.0 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DUF523 PF04463.12 CQR57671.1 - 4.1e-39 133.8 0.0 4.6e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF523) SRAP PF02586.14 CQR57672.1 - 1.8e-71 240.1 0.0 2.1e-71 240.0 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) DSX_dimer PF08828.10 CQR57674.1 - 0.096 12.4 0.0 13 5.6 0.0 2.2 2 0 0 2 2 2 0 Doublesex dimerisation domain Ldh_1_C PF02866.18 CQR57674.1 - 0.12 12.3 0.3 2.4 8.1 0.1 1.9 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DEDD_Tnp_IS110 PF01548.17 CQR57675.1 - 1.2e-24 86.9 0.0 2.4e-24 86.0 0.0 1.5 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.16 CQR57675.1 - 6.1e-14 52.1 0.0 1.2e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family cwf21 PF08312.12 CQR57675.1 - 0.085 13.0 1.7 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 cwf21 domain DUF4618 PF15397.6 CQR57675.1 - 0.088 12.2 2.7 0.57 9.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Rrf2 PF02082.20 CQR57678.1 - 6.4e-27 93.7 0.2 8.5e-27 93.3 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 CQR57678.1 - 0.0089 15.9 0.0 0.095 12.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HrcA_DNA-bdg PF03444.15 CQR57678.1 - 0.012 15.3 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RuvB_C PF05491.13 CQR57678.1 - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain tRNA_Me_trans PF03054.16 CQR57679.1 - 5.1e-146 486.0 0.0 5.8e-146 485.8 0.0 1.0 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 CQR57679.1 - 5.4e-07 29.0 0.0 3.9e-06 26.2 0.0 2.2 3 0 0 3 3 3 1 NAD synthase ATP_bind_3 PF01171.20 CQR57679.1 - 0.00012 21.9 0.0 0.00026 20.8 0.0 1.6 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 CQR57679.1 - 0.00025 20.8 0.0 0.0005 19.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 CQR57679.1 - 0.0019 17.8 0.0 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 CQR57679.1 - 0.0086 15.6 0.0 0.024 14.2 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Glyco_hydro_48 PF02011.15 CQR57680.1 - 5.6e-233 775.0 44.5 7.1e-196 652.5 35.7 2.3 2 1 0 2 2 2 2 Glycosyl hydrolase family 48 CBM_3 PF00942.18 CQR57680.1 - 6.4e-24 84.2 0.1 2.7e-23 82.2 0.1 2.2 1 0 0 1 1 1 1 Cellulose binding domain Glyco_hydro_9 PF00759.19 CQR57681.1 - 7e-142 473.7 28.4 9.7e-142 473.2 28.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 9 CBM_3 PF00942.18 CQR57681.1 - 6.8e-36 122.6 0.1 2.8e-22 78.9 0.0 3.0 2 0 0 2 2 2 2 Cellulose binding domain fn3 PF00041.21 CQR57681.1 - 0.00016 22.0 0.3 0.00051 20.3 0.3 2.0 1 0 0 1 1 1 1 Fibronectin type III domain Tombus_P19 PF03220.13 CQR57681.1 - 0.038 13.7 0.0 0.075 12.7 0.0 1.4 1 0 0 1 1 1 0 Tombusvirus P19 core protein MgsA_C PF12002.8 CQR57682.1 - 1.3e-53 181.4 0.2 2.6e-53 180.4 0.2 1.4 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal AAA_assoc_2 PF16193.5 CQR57682.1 - 3.3e-21 75.4 0.4 1.1e-20 73.7 0.2 2.0 2 0 0 2 2 1 1 AAA C-terminal domain AAA PF00004.29 CQR57682.1 - 6.2e-19 68.7 0.0 4.2e-18 66.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 CQR57682.1 - 8.2e-16 58.2 0.0 1.4e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 CQR57682.1 - 9.1e-09 35.4 0.1 1.4e-07 31.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 CQR57682.1 - 1.4e-08 34.6 0.0 0.0011 18.6 0.0 2.5 1 1 1 2 2 2 2 Sigma-54 interaction domain AAA_14 PF13173.6 CQR57682.1 - 5.1e-07 29.8 0.0 9.4e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR57682.1 - 6.6e-07 29.9 0.6 0.00016 22.1 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_2 PF07724.14 CQR57682.1 - 2.2e-06 27.9 0.0 3.4e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 CQR57682.1 - 2.9e-06 26.8 0.1 0.015 14.7 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 CQR57682.1 - 1.5e-05 25.1 0.0 4.6e-05 23.6 0.0 1.8 2 0 0 2 2 1 1 Sigma-54 interaction domain AAA_19 PF13245.6 CQR57682.1 - 6e-05 23.4 0.0 0.031 14.6 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 CQR57682.1 - 0.00021 21.8 0.0 0.00038 21.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 CQR57682.1 - 0.00022 20.5 0.0 0.0054 15.9 0.0 2.1 1 1 1 2 2 2 1 NB-ARC domain AAA_22 PF13401.6 CQR57682.1 - 0.00024 21.4 0.2 0.014 15.7 0.2 2.8 1 1 1 2 2 2 1 AAA domain AAA_3 PF07726.11 CQR57682.1 - 0.00043 20.1 0.0 0.0015 18.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 CQR57682.1 - 0.00056 19.1 0.0 0.00087 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DNA_pol3_delta2 PF13177.6 CQR57682.1 - 0.0019 18.0 0.0 3.8 7.3 0.0 3.0 2 1 1 3 3 3 1 DNA polymerase III, delta subunit ABC_tran PF00005.27 CQR57682.1 - 0.0019 18.7 0.0 0.0062 17.1 0.0 1.7 1 1 0 1 1 1 1 ABC transporter RNA_helicase PF00910.22 CQR57682.1 - 0.0019 18.6 0.0 0.0042 17.4 0.0 1.6 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.12 CQR57682.1 - 0.0019 17.5 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin ATPase_2 PF01637.18 CQR57682.1 - 0.002 18.1 0.1 0.012 15.6 0.0 2.2 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea TIP49 PF06068.13 CQR57682.1 - 0.004 16.4 0.0 0.012 14.9 0.0 1.8 2 0 0 2 2 1 1 TIP49 P-loop domain AAA_33 PF13671.6 CQR57682.1 - 0.0043 17.2 0.0 0.0071 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 CQR57682.1 - 0.0069 16.1 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad17 PF03215.15 CQR57682.1 - 0.0075 16.2 0.0 0.022 14.7 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_24 PF13479.6 CQR57682.1 - 0.011 15.4 0.0 0.031 14.0 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR57682.1 - 0.018 14.6 0.0 0.048 13.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 CQR57682.1 - 0.022 14.1 0.0 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 KaiC NACHT PF05729.12 CQR57682.1 - 0.023 14.6 0.0 0.076 12.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 CQR57682.1 - 0.024 14.4 0.2 0.41 10.3 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 CQR57682.1 - 0.025 14.8 0.0 0.051 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 CQR57682.1 - 0.035 13.9 0.1 0.28 11.0 0.1 2.1 1 1 0 1 1 1 0 Bacterial dnaA protein T2SSE PF00437.20 CQR57682.1 - 0.045 12.8 0.1 0.095 11.7 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.15 CQR57682.1 - 0.052 13.5 0.0 0.74 9.8 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.18 CQR57682.1 - 0.053 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DAP3 PF10236.9 CQR57682.1 - 0.062 12.5 0.1 0.19 10.9 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_17 PF13207.6 CQR57682.1 - 0.1 13.0 0.0 0.44 11.0 0.0 2.2 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 CQR57682.1 - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 NTPase ATP-synt_ab PF00006.25 CQR57682.1 - 0.12 12.0 0.0 0.32 10.6 0.0 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.6 CQR57682.1 - 0.15 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mor PF08765.11 CQR57683.1 - 1.9e-08 34.3 0.1 3.3e-07 30.3 0.1 2.0 1 1 0 1 1 1 1 Mor transcription activator family HTH_Mga PF08280.11 CQR57683.1 - 0.027 14.5 0.2 0.042 13.9 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain CENP-B_N PF04218.13 CQR57683.1 - 0.081 12.6 0.6 0.46 10.2 0.1 2.0 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain MCPsignal PF00015.21 CQR57684.1 - 1.5e-36 125.8 34.7 2.6e-36 125.0 21.3 5.2 2 1 4 6 6 6 4 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR57684.1 - 1.9e-19 70.4 0.3 1.9e-19 70.4 0.3 2.9 3 1 0 3 3 3 1 Cache domain HAMP PF00672.25 CQR57684.1 - 3.7e-16 59.2 1.1 3e-15 56.3 0.4 3.0 2 0 0 2 2 2 1 HAMP domain DUF948 PF06103.11 CQR57684.1 - 1.4e-05 25.3 34.7 0.0027 17.9 2.0 6.5 3 2 1 5 5 5 3 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 CQR57684.1 - 0.0028 18.1 20.2 0.028 14.9 1.1 5.9 3 2 3 6 6 6 1 Nucleopolyhedrovirus P10 protein Med9 PF07544.13 CQR57684.1 - 0.022 14.8 5.9 0.11 12.6 0.3 3.2 3 0 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF1664 PF07889.12 CQR57684.1 - 0.033 14.2 23.6 0.037 14.1 3.0 4.6 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 CQR57684.1 - 0.042 13.9 26.0 0.63 10.0 1.6 4.6 3 1 1 4 4 4 0 Laminin Domain II Spore_YhcN_YlaJ PF09580.10 CQR57684.1 - 0.21 11.6 3.1 0.15 12.2 0.3 2.2 2 1 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) EzrA PF06160.12 CQR57684.1 - 0.24 9.6 13.1 0.82 7.8 1.6 3.1 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA dCache_2 PF08269.11 CQR57684.1 - 0.35 10.0 0.0 0.35 10.0 0.0 3.7 3 1 2 5 5 5 0 Cache domain DUF4404 PF14357.6 CQR57684.1 - 0.36 11.5 14.9 0.48 11.1 0.3 4.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4404) Serine_rich PF08824.10 CQR57684.1 - 0.58 10.1 11.2 0.19 11.7 3.1 2.8 2 0 0 2 2 2 0 Serine rich protein interaction domain Fez1 PF06818.15 CQR57684.1 - 3.7 8.0 18.8 1.1 9.6 4.5 2.8 3 0 0 3 3 3 0 Fez1 Sigma70_ner PF04546.13 CQR57684.1 - 4.9 7.0 14.1 2.7 7.8 2.0 3.3 3 2 0 3 3 3 0 Sigma-70, non-essential region DUF615 PF04751.14 CQR57684.1 - 5.4 7.0 10.1 1.1 9.3 0.1 3.6 3 1 0 4 4 4 0 Protein of unknown function (DUF615) DUF724 PF05266.14 CQR57684.1 - 7.6 6.3 14.6 3.7 7.3 4.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF724) BLOC1_2 PF10046.9 CQR57684.1 - 8.6 6.7 22.9 8.8 6.7 3.5 4.9 3 2 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Dimer_Tnp_Tn5 PF02281.16 CQR57685.1 - 3.3e-18 65.3 0.0 5.6e-18 64.5 0.0 1.4 1 0 0 1 1 1 1 Transposase Tn5 dimerisation domain DDE_Tnp_1 PF01609.21 CQR57685.1 - 0.00016 21.4 0.0 0.00047 19.9 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain Tnp_DNA_bind PF14706.6 CQR57685.1 - 0.0025 17.7 0.1 0.0061 16.4 0.1 1.7 1 0 0 1 1 1 1 Transposase DNA-binding YjbF PF11102.8 CQR57685.1 - 0.039 13.7 0.1 0.089 12.6 0.1 1.7 1 0 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF UvrD-helicase PF00580.21 CQR57686.1 - 3.7e-11 43.1 0.7 5.2e-06 26.2 0.0 2.7 3 0 0 3 3 3 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 CQR57686.1 - 9.3e-11 42.3 0.0 9.3e-10 39.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 CQR57686.1 - 2.3e-10 40.2 0.1 1.2e-09 37.9 0.0 2.3 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 CQR57686.1 - 1.1e-08 34.8 0.0 0.00012 21.6 0.0 2.7 2 1 1 3 3 3 2 UvrD-like helicase C-terminal domain PhoH PF02562.16 CQR57686.1 - 0.00045 19.7 0.4 0.1 12.1 0.1 2.8 3 0 0 3 3 3 1 PhoH-like protein AAA_30 PF13604.6 CQR57686.1 - 0.0005 19.8 0.0 0.01 15.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 CQR57686.1 - 0.001 18.9 0.1 0.12 12.1 0.0 3.1 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase T2SSE PF00437.20 CQR57686.1 - 0.002 17.2 0.0 0.0038 16.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 CQR57686.1 - 0.0037 17.0 0.0 0.0089 15.8 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 CQR57686.1 - 0.0061 16.8 0.0 2.6 8.3 0.0 2.9 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 CQR57686.1 - 0.0078 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2075 PF09848.9 CQR57686.1 - 0.0094 15.2 0.0 0.029 13.6 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 CQR57686.1 - 0.021 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 CQR57686.1 - 0.034 14.2 0.0 9.2 6.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 CQR57686.1 - 0.098 13.0 0.0 0.54 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 CQR57686.1 - 0.12 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 CQR57686.1 - 0.12 12.1 0.0 0.92 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Xan_ur_permease PF00860.20 CQR57687.1 - 2.6e-30 105.4 42.1 2.6e-30 105.4 42.1 1.3 1 1 0 1 1 1 1 Permease family ThiF PF00899.21 CQR57688.1 - 6e-34 117.5 0.0 6.8e-34 117.3 0.0 1.1 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 CQR57688.1 - 1.2e-05 25.5 1.9 3.3e-05 24.1 1.9 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 CQR57688.1 - 0.0028 17.3 0.6 0.0028 17.3 0.6 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 CQR57688.1 - 0.0051 17.2 0.0 0.014 15.8 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding Cons_hypoth95 PF03602.15 CQR57688.1 - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 3HCDH_N PF02737.18 CQR57688.1 - 0.074 12.9 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR57688.1 - 0.092 13.0 1.9 0.2 11.9 0.9 2.0 2 1 0 2 2 2 0 TrkA-N domain FAD_binding_3 PF01494.19 CQR57688.1 - 0.16 11.2 0.6 0.26 10.5 0.6 1.3 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 CQR57688.1 - 0.38 10.1 2.0 1.2 8.4 1.3 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA-synt_2 PF00152.20 CQR57689.1 - 1.6e-103 346.1 0.0 1.9e-103 345.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GAD PF02938.14 CQR57689.1 - 5.7e-28 97.0 0.1 1.1e-27 96.0 0.1 1.5 1 0 0 1 1 1 1 GAD domain tRNA_anti-codon PF01336.25 CQR57689.1 - 1e-19 70.2 0.9 3.2e-19 68.7 0.9 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 CQR57689.1 - 0.011 15.2 0.2 0.35 10.3 0.1 2.5 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) tRNA-synt_His PF13393.6 CQR57690.1 - 1.8e-46 158.8 0.0 2.6e-46 158.3 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 CQR57690.1 - 1.6e-16 60.8 0.0 5.3e-16 59.1 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 CQR57690.1 - 4.9e-11 42.6 0.1 1.8e-10 40.9 0.0 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.20 CQR57690.1 - 0.0047 16.4 0.0 3 7.2 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Glyco_hydro_30 PF02055.16 CQR57690.1 - 0.066 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 30 TIM-barrel domain tRNA-synt_2 PF00152.20 CQR57690.1 - 0.075 12.1 0.2 1.7 7.6 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) Tyr_Deacylase PF02580.16 CQR57693.1 - 5.9e-59 198.7 0.0 6.6e-59 198.6 0.0 1.0 1 0 0 1 1 1 1 D-Tyr-tRNA(Tyr) deacylase HD_4 PF13328.6 CQR57694.1 - 6.2e-50 169.0 0.2 1.5e-49 167.7 0.2 1.7 1 0 0 1 1 1 1 HD domain RelA_SpoT PF04607.17 CQR57694.1 - 6.5e-40 136.1 2.4 1.6e-39 134.8 0.0 3.0 4 0 0 4 4 4 1 Region found in RelA / SpoT proteins TGS PF02824.21 CQR57694.1 - 4.6e-22 77.8 0.0 1e-21 76.7 0.0 1.7 1 0 0 1 1 1 1 TGS domain ACT_4 PF13291.6 CQR57694.1 - 3.6e-21 75.6 4.1 8.7e-21 74.3 4.1 1.7 1 0 0 1 1 1 1 ACT domain HD PF01966.22 CQR57694.1 - 1.2e-08 35.2 2.3 2.3e-07 31.0 0.3 3.0 2 1 0 2 2 2 1 HD domain ACT PF01842.25 CQR57694.1 - 5e-08 32.6 0.4 1.4e-07 31.2 0.4 1.8 1 0 0 1 1 1 1 ACT domain ThiS PF02597.20 CQR57694.1 - 0.0052 17.4 0.0 0.025 15.2 0.0 2.2 1 0 0 1 1 1 1 ThiS family ACT_6 PF13740.6 CQR57694.1 - 0.0057 16.6 0.5 0.028 14.4 0.0 2.2 2 0 0 2 2 2 1 ACT domain DUF4755 PF15947.5 CQR57694.1 - 0.087 12.8 0.1 0.72 9.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4755) Ub-Mut7C PF14451.6 CQR57694.1 - 0.09 12.6 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 Mut7-C ubiquitin DUF493 PF04359.14 CQR57694.1 - 0.11 13.0 0.8 0.45 11.1 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF493) Xan_ur_permease PF00860.20 CQR57695.1 - 9.1e-95 317.6 40.9 9.1e-95 317.6 40.9 1.6 1 1 1 2 2 2 1 Permease family NiFe_hyd_3_EhaA PF17367.2 CQR57695.1 - 0.0044 17.1 4.1 0.0044 17.1 4.1 4.6 3 2 2 5 5 5 1 NiFe-hydrogenase-type-3 Eha complex subunit A MFS_MOT1 PF16983.5 CQR57695.1 - 0.018 15.4 2.0 0.018 15.4 2.0 4.4 3 2 1 4 4 4 0 Molybdate transporter of MFS superfamily Pribosyltran PF00156.27 CQR57696.1 - 3.8e-14 52.5 0.2 4.8e-14 52.2 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 CQR57696.1 - 0.028 13.9 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase ssDNA-exonuc_C PF10141.9 CQR57697.1 - 2.2e-30 105.9 0.0 3.4e-30 105.2 0.0 1.3 1 0 0 1 1 1 1 Single-strand DNA-specific exonuclease, C terminal domain RecJ_OB PF17768.1 CQR57697.1 - 6.9e-25 87.4 0.0 1.3e-24 86.5 0.0 1.5 1 0 0 1 1 1 1 RecJ OB domain DHHA1 PF02272.19 CQR57697.1 - 1.2e-17 64.6 0.0 2.7e-17 63.5 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 CQR57697.1 - 6.2e-11 42.4 0.0 1.5e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.25 CQR57697.1 - 0.16 12.0 0.0 0.45 10.5 0.0 1.8 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Cation_efflux PF01545.21 CQR57698.1 - 3.4e-20 72.6 5.1 1.3e-19 70.7 5.1 1.8 1 1 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 CQR57698.1 - 9.9e-11 41.6 0.4 1.5e-10 41.1 0.4 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter SecD_SecF PF02355.16 CQR57699.1 - 2.9e-64 215.9 14.5 4.8e-64 215.2 14.5 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 CQR57699.1 - 4.3e-05 22.8 0.0 8.6e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF1077 PF06417.12 CQR57699.1 - 0.009 16.0 2.2 0.027 14.5 0.3 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1077) SecD_SecF PF02355.16 CQR57700.1 - 2.6e-15 56.3 12.9 2.6e-15 56.3 12.9 1.4 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 CQR57700.1 - 0.0015 17.5 14.3 0.0028 16.7 14.3 1.4 1 0 0 1 1 1 1 MMPL family ACR_tran PF00873.19 CQR57700.1 - 0.054 11.1 14.4 0.072 10.7 14.0 1.4 1 1 0 1 1 1 0 AcrB/AcrD/AcrF family Post_transc_reg PF13797.6 CQR57701.1 - 3.5e-21 74.9 0.0 4.4e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Post-transcriptional regulator Melibiase_2 PF16499.5 CQR57701.1 - 0.065 12.4 0.1 0.066 12.4 0.1 1.1 1 0 0 1 1 1 0 Alpha galactosidase A Polysacc_synt PF01943.17 CQR57702.1 - 4e-40 137.9 35.4 2.7e-38 131.9 16.1 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 CQR57702.1 - 3.6e-24 85.4 22.0 3.6e-24 85.4 22.0 4.3 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 CQR57702.1 - 1.7e-14 53.3 29.3 2.6e-14 52.7 29.3 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 CQR57702.1 - 3.7e-13 49.5 26.3 2e-08 34.0 9.0 3.6 3 1 1 4 4 4 3 MatE DUF3464 PF11947.8 CQR57702.1 - 0.49 10.1 6.2 2 8.2 0.5 3.5 3 1 1 4 4 4 0 Photosynthesis affected mutant 68 DUF421 PF04239.12 CQR57703.1 - 2.6e-34 117.3 0.0 5.7e-33 112.9 0.0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF421) DUF3792 PF12670.7 CQR57704.1 - 3.1e-20 72.4 11.4 4e-20 72.1 11.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) PAP2_3 PF14378.6 CQR57705.1 - 1.2e-12 47.9 12.5 1.2e-12 47.9 12.5 2.2 2 0 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 CQR57705.1 - 5.1e-11 42.5 3.6 5.1e-11 42.5 3.6 2.3 2 1 0 3 3 3 1 PAP2 superfamily MFS_MOT1 PF16983.5 CQR57705.1 - 0.57 10.6 6.0 0.11 12.9 1.5 2.1 2 0 0 2 2 2 0 Molybdate transporter of MFS superfamily Peptidase_S8 PF00082.22 CQR57706.1 - 5.6e-19 68.5 0.0 9.9e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Subtilase family DUF1611 PF07755.11 CQR57708.1 - 0.0011 18.3 0.0 0.0048 16.2 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain Radical_SAM PF04055.21 CQR57709.1 - 2.1e-10 41.2 0.1 6.1e-10 39.7 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 CQR57709.1 - 5.8e-09 36.3 0.1 5.8e-09 36.3 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 CQR57709.1 - 1.1e-05 25.5 0.0 1.1e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain LemA PF04011.12 CQR57709.1 - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 LemA family ABC_membrane PF00664.23 CQR57710.1 - 1.6e-40 139.5 27.7 2.1e-40 139.1 27.7 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR57710.1 - 1.7e-33 116.0 0.2 3.6e-33 115.0 0.1 1.7 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 CQR57710.1 - 2.5e-07 30.4 7.1 2.2e-05 24.0 7.1 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR57710.1 - 0.00027 20.9 0.0 0.00095 19.1 0.0 1.9 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 CQR57710.1 - 0.0013 17.6 0.4 0.0013 17.6 0.4 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class Herpes_heli_pri PF05774.11 CQR57710.1 - 0.0025 18.0 0.1 1.2 9.4 0.0 2.6 2 0 0 2 2 2 1 Herpesvirus helicase-primase complex component AAA_16 PF13191.6 CQR57710.1 - 0.0067 16.8 0.0 0.017 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain ATP-synt_ab PF00006.25 CQR57710.1 - 0.0074 16.0 0.1 0.021 14.5 0.1 1.8 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.29 CQR57710.1 - 0.016 15.0 0.4 0.046 13.5 0.4 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_22 PF13401.6 CQR57710.1 - 0.028 14.7 1.7 0.084 13.2 0.3 2.4 2 1 0 2 2 1 0 AAA domain AAA_29 PF13555.6 CQR57710.1 - 0.031 14.0 0.2 0.075 12.8 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 CQR57710.1 - 0.037 14.3 0.7 0.26 11.5 0.2 2.5 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CQR57710.1 - 0.066 12.9 0.1 0.25 11.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR57710.1 - 0.074 13.1 0.3 0.31 11.1 0.3 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 CQR57710.1 - 0.13 11.9 0.4 0.36 10.5 0.4 1.7 1 1 0 1 1 1 0 AAA domain Pox_A9 PF04835.12 CQR57710.1 - 5 7.3 9.7 0.14 12.3 2.1 2.5 2 0 0 2 2 1 0 A9 protein conserved region AAA_23 PF13476.6 CQR57710.1 - 9.9 6.6 14.5 0.14 12.7 3.3 2.9 2 1 1 3 3 3 0 AAA domain YajC PF02699.15 CQR57711.1 - 1.6e-29 101.6 0.4 1.9e-29 101.4 0.4 1.1 1 0 0 1 1 1 1 Preprotein translocase subunit DUF2619 PF10942.8 CQR57711.1 - 0.005 16.9 0.1 0.11 12.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2619) Orf78 PF06024.12 CQR57711.1 - 0.014 15.7 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 Orf78 (ac78) T2SSM PF04612.12 CQR57711.1 - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M TGT PF01702.18 CQR57712.1 - 1.5e-158 527.6 0.0 1.7e-158 527.3 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Queuosine_synth PF02547.15 CQR57713.1 - 2.5e-143 477.1 0.0 2.8e-143 476.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein SpoIID PF08486.10 CQR57714.1 - 4.5e-25 88.0 0.1 1.2e-24 86.7 0.1 1.6 1 0 0 1 1 1 1 Stage II sporulation protein SPOR PF05036.13 CQR57714.1 - 5.2e-08 33.1 2.2 0.00057 20.2 0.1 3.0 2 0 0 2 2 2 2 Sporulation related domain RuvB_N PF05496.12 CQR57715.1 - 2.3e-84 280.9 0.0 3.4e-84 280.4 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 CQR57715.1 - 6.4e-31 105.9 0.1 1.3e-30 104.9 0.1 1.6 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 CQR57715.1 - 7e-27 93.1 0.0 1.4e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 CQR57715.1 - 3.8e-21 75.9 0.0 7.5e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR57715.1 - 8e-11 42.1 0.1 2.7e-09 37.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 CQR57715.1 - 1.1e-05 24.9 0.3 0.015 14.7 0.0 2.7 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 CQR57715.1 - 7.4e-05 23.2 0.1 0.0022 18.4 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain TIP49 PF06068.13 CQR57715.1 - 0.00012 21.4 0.1 0.0011 18.2 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_22 PF13401.6 CQR57715.1 - 0.00021 21.6 0.2 0.05 13.9 0.0 2.5 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.26 CQR57715.1 - 0.00029 20.6 0.0 0.23 11.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.22 CQR57715.1 - 0.00096 18.4 0.0 0.023 13.9 0.0 2.4 3 0 0 3 3 3 1 NB-ARC domain NTPase_1 PF03266.15 CQR57715.1 - 0.0011 19.0 0.2 0.048 13.6 0.0 2.5 2 1 1 3 3 2 1 NTPase TsaE PF02367.17 CQR57715.1 - 0.0011 19.0 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 CQR57715.1 - 0.0013 18.8 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 CQR57715.1 - 0.0016 18.8 0.0 0.0027 18.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_3 PF07726.11 CQR57715.1 - 0.0019 18.1 0.0 0.02 14.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 CQR57715.1 - 0.0024 18.4 0.0 0.006 17.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR57715.1 - 0.0027 17.7 0.0 0.0042 17.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain Bac_DnaA PF00308.18 CQR57715.1 - 0.0046 16.8 0.2 0.16 11.8 0.0 2.4 3 0 0 3 3 2 1 Bacterial dnaA protein AAA_24 PF13479.6 CQR57715.1 - 0.0051 16.5 0.0 0.014 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 CQR57715.1 - 0.0077 16.3 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Resolvase PF00239.21 CQR57715.1 - 0.0087 16.2 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain DUF815 PF05673.13 CQR57715.1 - 0.015 14.4 0.0 0.14 11.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) MCM PF00493.23 CQR57715.1 - 0.025 13.7 0.1 1.5 7.9 0.1 2.2 1 1 0 1 1 1 0 MCM P-loop domain NACHT PF05729.12 CQR57715.1 - 0.032 14.2 0.0 0.077 12.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Torsin PF06309.11 CQR57715.1 - 0.033 14.3 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 Torsin ResIII PF04851.15 CQR57715.1 - 0.037 14.0 0.0 3.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_2 PF07724.14 CQR57715.1 - 0.05 13.7 0.0 1.5 8.9 0.0 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 CQR57715.1 - 0.054 13.2 0.1 0.32 10.7 0.1 2.1 1 1 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 CQR57715.1 - 0.062 13.8 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 CQR57715.1 - 0.075 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 CQR57715.1 - 0.077 13.4 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR57715.1 - 0.082 12.5 0.2 0.48 10.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 CQR57715.1 - 0.087 12.2 0.1 2.8 7.3 0.0 2.1 1 1 1 2 2 2 0 Bacterial TniB protein RsgA_GTPase PF03193.16 CQR57715.1 - 0.094 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 CQR57715.1 - 0.11 12.7 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 CQR57715.1 - 0.14 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 CQR57715.1 - 0.17 12.2 0.6 1.3 9.3 0.0 2.3 2 1 0 3 3 2 0 AAA domain RuvA_N PF01330.21 CQR57716.1 - 2.1e-21 75.8 0.1 1.4e-20 73.1 0.0 2.1 2 0 0 2 2 2 1 RuvA N terminal domain HHH_5 PF14520.6 CQR57716.1 - 1.3e-18 67.3 0.3 3e-18 66.2 0.1 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain RuvA_C PF07499.13 CQR57716.1 - 1.3e-05 25.5 0.7 2.5e-05 24.6 0.1 1.8 1 1 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 CQR57716.1 - 8.5e-05 22.2 0.3 0.0057 16.5 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 CQR57716.1 - 0.0066 16.8 0.0 0.22 11.9 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 CQR57716.1 - 0.0076 16.5 0.2 0.029 14.7 0.0 2.1 2 0 0 2 2 2 1 IMS family HHH motif HHH_2 PF12826.7 CQR57716.1 - 0.019 15.1 0.0 5.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_3 PF12836.7 CQR57716.1 - 0.019 15.2 0.0 0.5 10.6 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cdd1 PF11731.8 CQR57716.1 - 0.12 12.6 0.0 0.59 10.4 0.0 2.2 2 0 0 2 2 2 0 Pathogenicity locus RuvC PF02075.17 CQR57717.1 - 3.9e-59 198.8 0.4 4.4e-59 198.6 0.4 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC BofC_C PF08955.10 CQR57718.1 - 1.9e-27 95.1 0.1 3.1e-27 94.4 0.1 1.4 1 0 0 1 1 1 1 BofC C-terminal domain Serpin PF00079.20 CQR57719.1 - 6.3e-101 338.3 0.0 7.3e-101 338.2 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Enoyl_reductase PF12241.8 CQR57720.1 - 1.1e-113 378.4 1.8 1.4e-113 378.1 1.8 1.1 1 0 0 1 1 1 1 Trans-2-enoyl-CoA reductase catalytic region Eno-Rase_NADH_b PF12242.8 CQR57720.1 - 9.4e-37 124.6 0.4 2.1e-36 123.6 0.4 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Eno-Rase_FAD_bd PF07055.12 CQR57720.1 - 1.2e-25 89.7 1.0 2.2e-25 88.8 1.0 1.5 1 0 0 1 1 1 1 Enoyl reductase FAD binding domain Response_reg PF00072.24 CQR57721.1 - 7.3e-24 84.1 0.2 1.5e-23 83.1 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57721.1 - 1.4e-18 66.9 0.0 3.5e-18 65.7 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57721.1 - 3.3e-14 52.6 0.0 2.9e-08 33.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Pox_RNA_Pol_19 PF05320.12 CQR57721.1 - 0.0088 16.0 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit His_kinase PF06580.13 CQR57722.1 - 6.4e-20 71.3 2.2 6.4e-20 71.3 2.2 2.2 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR57722.1 - 1e-11 45.1 1.7 1e-11 45.1 1.7 2.0 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR57722.1 - 1.1e-05 25.9 0.0 2.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR57722.1 - 0.0063 16.5 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 CQR57722.1 - 0.011 16.1 0.0 0.024 15.0 0.0 1.6 1 0 0 1 1 1 0 HAMP domain SBP_bac_8 PF13416.6 CQR57723.1 - 1.2e-19 71.2 2.7 2.2e-19 70.4 2.7 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR57723.1 - 2.4e-13 50.7 6.3 4.5e-13 49.8 6.3 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR57724.1 - 4.2e-17 62.5 15.9 4.2e-17 62.5 15.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57725.1 - 1.5e-07 31.3 13.8 1.5e-07 31.3 13.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PIG-Y PF15159.6 CQR57725.1 - 0.57 11.1 9.8 3.2 8.7 0.1 3.3 4 0 0 4 4 4 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y Glyco_hydro_88 PF07470.13 CQR57726.1 - 1.2e-63 215.3 0.1 1.6e-63 214.9 0.1 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 CBM9_1 PF06452.11 CQR57727.1 - 1.1e-14 54.8 0.2 1.1e-14 54.8 0.2 2.3 2 0 0 2 2 2 1 Carbohydrate family 9 binding domain-like fn3 PF00041.21 CQR57727.1 - 1.8e-11 44.2 1.5 8.7e-11 42.0 1.5 2.2 1 0 0 1 1 1 1 Fibronectin type III domain Laminin_G_3 PF13385.6 CQR57727.1 - 1.7e-08 34.8 3.4 0.0033 17.6 0.3 3.1 2 0 0 2 2 2 2 Concanavalin A-like lectin/glucanases superfamily NPCBM_assoc PF10633.9 CQR57727.1 - 2e-07 31.2 0.1 2.7e-06 27.5 0.0 3.1 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1080 PF06439.11 CQR57727.1 - 3e-06 27.5 0.3 0.06 13.4 0.3 2.9 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1080) FixG_C PF11614.8 CQR57727.1 - 4.6e-05 23.6 0.1 0.0047 17.1 0.0 3.5 4 0 0 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase fn3_2 PF16893.5 CQR57727.1 - 0.014 15.5 0.1 0.074 13.2 0.1 2.2 1 1 0 1 1 1 0 Fibronectin type III domain Laminin_G_2 PF02210.24 CQR57727.1 - 0.052 14.1 0.0 12 6.5 0.0 2.9 2 0 0 2 2 2 0 Laminin G domain Pur_ac_phosph_N PF16656.5 CQR57727.1 - 0.064 13.8 8.6 0.032 14.8 4.7 2.7 2 0 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain Melibiase PF02065.18 CQR57728.1 - 1.3e-09 37.5 0.0 2.1e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Melibiase GHL10 PF02638.15 CQR57728.1 - 0.0096 15.0 0.0 0.027 13.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase-like 10 Glyco_hydro_66 PF13199.6 CQR57728.1 - 0.14 10.7 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 FlgD_ig PF13860.6 CQR57728.1 - 0.16 11.8 0.0 0.38 10.6 0.0 1.6 1 0 0 1 1 1 0 FlgD Ig-like domain Raffinose_syn PF05691.12 CQR57728.1 - 0.16 9.7 0.0 0.25 9.1 0.0 1.2 1 0 0 1 1 1 0 Raffinose synthase or seed imbibition protein Sip1 FtsX PF02687.21 CQR57729.1 - 4.2e-11 43.2 20.2 5.3e-10 39.6 10.4 5.9 5 1 1 6 6 6 2 FtsX-like permease family ABC_tran PF00005.27 CQR57730.1 - 1.8e-35 122.4 0.1 2.5e-35 122.0 0.1 1.2 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 CQR57730.1 - 0.00024 21.1 0.1 0.0007 19.5 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 CQR57730.1 - 0.00086 19.0 0.2 0.0018 18.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR57730.1 - 0.001 18.9 0.1 0.56 10.0 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR57730.1 - 0.0011 19.3 0.8 0.028 14.7 0.7 2.7 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 CQR57730.1 - 0.0014 18.1 1.1 0.0092 15.4 1.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR57730.1 - 0.002 18.5 0.1 0.0038 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR57730.1 - 0.0022 18.5 0.6 0.0031 18.0 0.6 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 CQR57730.1 - 0.011 15.3 0.2 0.28 10.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 CQR57730.1 - 0.014 15.0 0.1 0.029 14.0 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 CQR57730.1 - 0.032 14.1 0.1 0.12 12.3 0.0 1.9 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 CQR57730.1 - 0.033 13.9 2.6 0.1 12.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 CQR57730.1 - 0.037 13.7 0.2 0.05 13.3 0.2 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain His_Phos_1 PF00300.22 CQR57730.1 - 0.039 13.6 0.0 0.067 12.9 0.0 1.3 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) NTPase_1 PF03266.15 CQR57730.1 - 0.043 13.7 0.4 1.7 8.5 0.2 2.3 2 1 0 2 2 2 0 NTPase AAA_24 PF13479.6 CQR57730.1 - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR57730.1 - 0.048 13.6 0.1 0.16 11.9 0.1 1.8 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 CQR57730.1 - 0.051 12.8 0.1 0.089 12.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 CQR57730.1 - 0.07 13.2 0.4 0.24 11.5 0.1 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase T2SSE PF00437.20 CQR57730.1 - 0.077 12.0 0.2 0.14 11.1 0.2 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.6 CQR57730.1 - 0.077 13.2 0.3 0.86 9.9 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 CQR57730.1 - 0.08 13.2 0.3 0.37 11.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 CQR57730.1 - 0.08 12.6 0.0 0.23 11.1 0.0 1.5 1 1 0 2 2 2 0 AAA ATPase domain MobB PF03205.14 CQR57730.1 - 0.11 12.4 0.3 0.45 10.4 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 CQR57730.1 - 0.14 12.7 0.9 0.42 11.2 0.5 2.0 1 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 CQR57730.1 - 0.17 11.5 2.5 2.7 7.6 0.2 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 CQR57730.1 - 0.24 11.8 1.3 0.96 9.9 1.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 CQR57730.1 - 0.25 11.5 0.9 0.57 10.3 0.9 1.8 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.26 CQR57731.1 - 1e-17 64.6 0.0 1.6e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR57731.1 - 0.00017 21.5 0.2 0.00037 20.3 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR57731.1 - 0.00017 21.6 0.0 0.00029 20.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 CQR57731.1 - 0.0014 18.6 0.0 0.0044 17.0 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Pox_I3 PF04661.12 CQR57731.1 - 0.085 12.0 0.1 0.13 11.4 0.1 1.1 1 0 0 1 1 1 0 Poxvirus I3 ssDNA-binding protein Response_reg PF00072.24 CQR57732.1 - 2.3e-22 79.3 0.0 4.2e-22 78.4 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR57732.1 - 2e-21 75.9 0.1 3.9e-21 74.9 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HTH_19 PF12844.7 CQR57733.1 - 7.6e-10 38.7 0.2 1.9e-09 37.4 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR57733.1 - 4.2e-06 26.7 0.0 8.1e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR57733.1 - 0.0021 18.4 0.0 0.0033 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MFS_1 PF07690.16 CQR57734.1 - 1.9e-31 109.3 61.0 7e-28 97.6 37.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 CQR57734.1 - 0.00015 20.7 4.6 0.00015 20.7 4.6 2.1 2 0 0 2 2 2 1 LacY proton/sugar symporter KdpD PF02702.17 CQR57735.1 - 1.5e-162 537.5 8.9 6.2e-94 313.3 1.3 2.2 2 0 0 2 2 2 2 Osmosensitive K+ channel His kinase sensor domain Usp PF00582.26 CQR57735.1 - 2.9e-09 37.6 0.2 0.022 15.3 0.0 4.4 3 2 0 3 3 3 2 Universal stress protein family ResIII PF04851.15 CQR57735.1 - 0.00067 19.7 0.1 0.69 9.9 0.0 3.1 2 1 1 3 3 3 2 Type III restriction enzyme, res subunit AAA_30 PF13604.6 CQR57735.1 - 0.00074 19.3 0.0 0.9 9.2 0.0 3.0 3 0 0 3 3 3 2 AAA domain SRP54 PF00448.22 CQR57735.1 - 0.0033 17.1 0.0 0.042 13.5 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PAS_8 PF13188.7 CQR57735.1 - 0.029 14.4 0.1 0.11 12.6 0.1 2.0 1 0 0 1 1 1 0 PAS domain Microtub_bd PF16796.5 CQR57735.1 - 0.029 14.3 0.0 8 6.4 0.0 2.4 2 0 0 2 2 2 0 Microtubule binding AAA_19 PF13245.6 CQR57735.1 - 0.05 13.9 3.9 0.95 9.8 0.4 3.2 2 2 0 2 2 2 0 AAA domain Glyco_transf_4 PF13439.6 CQR57735.1 - 0.072 13.1 0.8 0.7 9.9 0.1 2.9 3 0 0 3 3 3 0 Glycosyltransferase Family 4 NTPase_1 PF03266.15 CQR57735.1 - 0.92 9.4 4.6 30 4.5 2.4 3.3 2 1 0 2 2 2 0 NTPase KdpC PF02669.15 CQR57736.1 - 1.3e-66 223.9 0.1 1.5e-66 223.7 0.1 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain E1-E2_ATPase PF00122.20 CQR57737.1 - 4.9e-35 120.7 3.3 4.9e-35 120.7 3.3 2.7 3 0 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 CQR57737.1 - 7.9e-35 121.1 1.3 7.9e-35 121.1 1.3 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR57737.1 - 1.5e-07 31.4 1.2 0.00011 22.0 0.6 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR57737.1 - 0.00058 20.3 0.0 0.0044 17.4 0.0 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase TcpE PF12648.7 CQR57737.1 - 5 7.7 12.1 4.9 7.8 1.0 3.5 4 0 0 4 4 4 0 TcpE family KdpA PF03814.15 CQR57738.1 - 5.1e-233 774.2 35.1 6e-233 774.0 35.1 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit Response_reg PF00072.24 CQR57741.1 - 4.6e-29 100.8 0.1 7.1e-29 100.2 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR57741.1 - 1.5e-19 69.9 0.4 6.2e-19 67.9 0.0 2.2 3 0 0 3 3 3 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 CQR57741.1 - 0.043 14.2 0.0 0.094 13.1 0.0 1.6 2 0 0 2 2 2 0 Flagellar regulatory protein FleQ KdpD PF02702.17 CQR57742.1 - 1.8e-88 295.5 0.5 3.6e-88 294.5 0.1 1.7 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 CQR57742.1 - 1.3e-31 108.6 7.3 2.5e-31 107.7 7.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c PF02518.26 CQR57742.1 - 2.8e-26 92.2 1.4 4.6e-26 91.5 0.2 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR57742.1 - 2.2e-12 46.8 3.3 9.9e-12 44.7 0.0 3.6 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR57742.1 - 0.00022 21.1 0.1 0.00053 19.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR57742.1 - 0.0014 18.5 0.3 0.0062 16.4 0.0 2.2 2 0 0 2 2 2 1 GHKL domain Usp PF00582.26 CQR57742.1 - 0.0031 18.0 0.3 0.032 14.7 0.1 2.8 2 1 0 2 2 2 1 Universal stress protein family Trep_Strep PF09605.10 CQR57742.1 - 0.013 15.5 5.1 0.028 14.4 5.1 1.5 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) HATPase_c_2 PF13581.6 CQR57742.1 - 0.034 14.1 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PRA-PH PF01503.17 CQR57742.1 - 0.059 13.8 0.2 3.7 8.1 0.0 2.7 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase HipA_C PF07804.12 CQR57743.1 - 6.4e-08 32.5 0.0 9.1e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 HipA-like C-terminal domain PI3_PI4_kinase PF00454.27 CQR57743.1 - 0.054 13.3 0.2 0.11 12.3 0.2 1.6 1 1 0 1 1 1 0 Phosphatidylinositol 3- and 4-kinase HTH_1 PF00126.27 CQR57744.1 - 6.2e-18 64.5 0.1 1.5e-17 63.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 CQR57744.1 - 5.7e-15 55.2 0.4 9e-15 54.6 0.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_30 PF13556.6 CQR57744.1 - 0.00012 21.8 0.0 0.00024 20.8 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 CQR57744.1 - 0.00048 20.1 0.2 0.00099 19.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR57744.1 - 0.0048 17.0 0.0 0.017 15.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 CQR57744.1 - 0.0056 16.2 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR57744.1 - 0.027 14.3 0.1 0.082 12.8 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 CQR57744.1 - 0.032 14.1 0.1 0.066 13.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_8 PF02954.19 CQR57744.1 - 0.046 13.5 0.1 0.089 12.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family MarR PF01047.22 CQR57744.1 - 0.048 13.6 0.1 0.096 12.6 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 CQR57744.1 - 0.078 12.8 0.4 0.42 10.5 0.0 2.4 3 0 0 3 3 3 0 Homeodomain-like domain HTH_27 PF13463.6 CQR57744.1 - 0.083 13.4 0.1 0.23 12.0 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_50 PF18024.1 CQR57744.1 - 0.089 12.4 0.3 0.25 11.0 0.3 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR57744.1 - 0.097 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain 2-Hacid_dh_C PF02826.19 CQR57745.1 - 1.6e-59 200.2 0.0 2.1e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 CQR57745.1 - 4e-18 65.4 0.0 5.6e-18 64.9 0.0 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 CQR57745.1 - 2.4e-06 27.8 0.4 5.4e-06 26.6 0.2 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 CQR57745.1 - 8.4e-05 22.2 0.1 0.00015 21.4 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Atg8 PF02991.16 CQR57745.1 - 0.02 15.1 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Autophagy protein Atg8 ubiquitin like AAA_18 PF13238.6 CQR57746.1 - 2.4e-09 37.8 0.0 3.7e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR57746.1 - 0.00028 21.1 0.0 0.00047 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 CQR57746.1 - 0.025 13.8 0.0 0.078 12.2 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin AlaE PF06610.13 CQR57746.1 - 0.085 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 L-alanine exporter LysM PF01476.20 CQR57747.1 - 9e-28 96.1 0.7 4.9e-14 52.1 0.0 2.3 2 0 0 2 2 2 2 LysM domain Aminotran_4 PF01063.19 CQR57748.1 - 1.9e-54 184.9 0.0 2.2e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Ig_J_chain PF15097.6 CQR57748.1 - 0.18 11.7 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Immunoglobulin J chain PDT PF00800.18 CQR57749.1 - 2.8e-43 147.9 0.0 3.5e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 CQR57749.1 - 3.6e-08 33.0 0.0 1.7e-07 30.9 0.0 2.2 2 0 0 2 2 2 1 ACT domain GHMP_kinases_N PF00288.26 CQR57750.1 - 4.7e-11 42.8 1.4 4.7e-11 42.8 1.4 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 CQR57750.1 - 2.8e-09 37.2 0.2 7.1e-09 35.9 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Homoserine_dh PF00742.19 CQR57751.1 - 4.1e-67 225.4 0.4 1.3e-64 217.2 0.2 2.4 2 0 0 2 2 2 2 Homoserine dehydrogenase NAD_binding_3 PF03447.16 CQR57751.1 - 1.9e-19 70.4 0.1 4e-19 69.4 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT PF01842.25 CQR57751.1 - 3e-10 39.7 0.1 8.2e-10 38.3 0.1 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 CQR57751.1 - 4.9e-05 23.9 2.0 0.0002 21.9 0.4 2.3 2 0 0 2 2 2 1 ACT domain DXP_reductoisom PF02670.16 CQR57751.1 - 0.0022 18.7 0.2 0.012 16.3 0.0 2.4 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACT_4 PF13291.6 CQR57752.1 - 1.6e-06 28.6 0.3 2.4e-06 28.0 0.3 1.2 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 CQR57752.1 - 0.00025 20.7 0.2 0.00041 20.0 0.2 1.4 1 0 0 1 1 1 1 ACT domain HTH_7 PF02796.15 CQR57752.1 - 0.011 15.8 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase ACT_6 PF13740.6 CQR57752.1 - 0.038 14.0 0.2 0.054 13.5 0.2 1.3 1 0 0 1 1 1 0 ACT domain zf-ribbon_3 PF13248.6 CQR57753.1 - 0.0011 18.2 4.2 0.0021 17.4 4.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HTH_DeoR PF08220.12 CQR57753.1 - 0.0083 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DZR PF12773.7 CQR57753.1 - 0.05 13.6 3.4 0.21 11.6 3.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.17 CQR57753.1 - 0.074 12.8 1.0 0.13 11.9 1.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 DNA_RNApol_7kD PF03604.13 CQR57753.1 - 0.15 11.8 0.9 0.28 10.9 0.9 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Peptidase_U4 PF03419.13 CQR57753.1 - 0.16 11.3 6.3 0.21 10.9 6.3 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA zinc_ribbon_2 PF13240.6 CQR57753.1 - 4.4 7.2 5.9 20 5.0 6.1 1.9 1 1 1 2 2 2 0 zinc-ribbon domain DUF1184 PF06683.11 CQR57754.1 - 0.042 13.3 0.2 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1184) Band_7_1 PF13421.6 CQR57755.1 - 7.5e-58 195.7 0.0 9.5e-58 195.4 0.0 1.1 1 0 0 1 1 1 1 SPFH domain-Band 7 family DZR PF12773.7 CQR57755.1 - 9.1e-22 76.8 28.2 2.8e-12 46.5 9.3 2.2 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 CQR57755.1 - 1.9e-18 65.6 27.6 4.4e-08 32.6 3.7 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zf-ribbon_3 PF13248.6 CQR57755.1 - 2e-13 49.2 26.4 9e-05 21.7 3.3 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_15 PF17032.5 CQR57755.1 - 2.2e-10 41.1 12.2 0.0005 20.8 0.7 3.3 3 0 0 3 3 3 3 zinc-ribbon family Band_7 PF01145.25 CQR57755.1 - 1.8e-05 24.8 0.0 2.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family UPF0547 PF10571.9 CQR57755.1 - 3e-05 24.0 27.8 0.042 13.9 2.8 4.3 4 0 0 4 4 4 3 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 CQR57755.1 - 0.0028 17.5 31.8 0.018 14.9 4.7 5.2 4 1 0 4 4 4 2 Nudix N-terminal DUF35_N PF12172.8 CQR57755.1 - 0.032 14.1 4.2 0.032 14.1 4.2 3.6 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-tcix PF14952.6 CQR57755.1 - 0.4 10.3 26.0 0.26 11.0 5.1 3.8 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-TRM13_CCCH PF11722.8 CQR57755.1 - 0.86 9.4 3.3 9 6.2 0.3 2.7 3 0 0 3 3 3 0 CCCH zinc finger in TRM13 protein Zn_Tnp_IS91 PF14319.6 CQR57755.1 - 1.6 8.8 16.8 0.5 10.4 0.5 3.2 2 1 1 3 3 3 0 Transposase zinc-binding domain NOB1_Zn_bind PF08772.11 CQR57755.1 - 3.5 7.8 22.5 0.3 11.3 1.2 3.8 2 2 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Ogr_Delta PF04606.12 CQR57755.1 - 4.8 7.2 8.8 34 4.5 0.1 3.8 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger GFA PF04828.14 CQR57755.1 - 7.2 7.0 19.3 13 6.2 1.6 4.6 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.11 CQR57755.1 - 9.1 6.0 29.7 1.9 8.2 0.1 5.4 5 1 0 5 5 5 0 NADH pyrophosphatase zinc ribbon domain GTP1_OBG PF01018.22 CQR57756.1 - 3e-59 199.1 6.0 3e-59 199.1 6.0 1.7 2 0 0 2 2 2 1 GTP1/OBG DUF1967 PF09269.11 CQR57756.1 - 1.4e-21 76.2 0.0 3.5e-21 74.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1967) MMR_HSR1 PF01926.23 CQR57756.1 - 1.4e-21 76.6 0.0 2.7e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR57756.1 - 4e-10 39.5 0.0 3.6e-09 36.3 0.0 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B MeaB PF03308.16 CQR57756.1 - 7.2e-05 21.9 0.1 0.3 10.0 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_C PF08438.10 CQR57756.1 - 0.00024 21.6 0.3 0.39 11.3 0.0 3.2 2 1 1 3 3 3 2 GTPase of unknown function C-terminal GTP_EFTU PF00009.27 CQR57756.1 - 0.013 15.0 0.0 0.09 12.3 0.0 2.3 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain Gtr1_RagA PF04670.12 CQR57756.1 - 0.074 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region ATP_bind_1 PF03029.17 CQR57756.1 - 0.14 11.9 0.1 6.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.19 CQR57756.1 - 0.15 11.6 0.0 5.2 6.6 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 CQR57756.1 - 0.18 11.5 0.0 0.5 10.1 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SPOB_a PF14689.6 CQR57757.1 - 8.8e-16 57.4 0.2 1.6e-15 56.6 0.2 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain UbiA PF01040.18 CQR57757.1 - 0.012 14.9 4.0 0.018 14.3 4.0 1.2 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF3810 PF12725.7 CQR57757.1 - 0.12 11.7 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Ribosomal_L27 PF01016.19 CQR57758.1 - 7.8e-38 128.4 3.6 9e-38 128.2 3.6 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein Peptidase_Prp PF04327.12 CQR57759.1 - 9.7e-27 93.1 0.0 1.1e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Cysteine protease Prp ACD PF16671.5 CQR57759.1 - 0.075 11.3 0.0 0.093 11.0 0.0 1.2 1 0 0 1 1 1 0 Actin cross-linking domain Ribosomal_L21p PF00829.21 CQR57760.1 - 7e-45 151.4 1.7 7.7e-45 151.3 1.7 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein RapA_C PF12137.8 CQR57760.1 - 0.1 11.6 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal RNase_E_G PF10150.9 CQR57761.1 - 2.5e-91 305.9 0.0 3.1e-91 305.6 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 CQR57761.1 - 0.014 15.7 0.1 0.033 14.5 0.1 1.6 1 0 0 1 1 1 0 S1 RNA binding domain Peptidase_M50 PF02163.22 CQR57762.1 - 4.3e-15 55.7 12.5 1.1e-07 31.4 4.8 2.5 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 CQR57762.1 - 2e-06 27.6 15.4 1.7e-05 24.6 15.4 2.0 1 1 0 1 1 1 1 Peptidase M50B-like CBS PF00571.28 CQR57762.1 - 0.0087 16.5 0.0 0.019 15.4 0.0 1.6 1 0 0 1 1 1 1 CBS domain M3 PF09213.10 CQR57762.1 - 0.17 10.5 0.0 0.28 9.9 0.0 1.2 1 0 0 1 1 1 0 M3 Peptidase_M23 PF01551.22 CQR57763.1 - 1.3e-12 47.8 0.0 2e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M23 AAA_31 PF13614.6 CQR57764.1 - 1e-24 87.4 0.2 2e-24 86.5 0.2 1.4 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 CQR57764.1 - 2.3e-24 85.9 0.2 2.9e-24 85.5 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 CQR57764.1 - 9.3e-22 77.7 3.2 9.1e-21 74.4 3.2 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 CQR57764.1 - 4.3e-12 46.0 0.1 3.6e-11 43.0 0.1 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 CQR57764.1 - 1.2e-11 44.5 1.0 9.4e-06 25.3 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 CQR57764.1 - 1.3e-11 44.3 0.1 2.1e-11 43.6 0.1 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 CQR57764.1 - 3.6e-10 39.5 2.7 2.5e-07 30.2 1.4 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.11 CQR57764.1 - 0.00088 18.6 0.4 0.0037 16.6 0.4 1.9 2 1 1 3 3 3 1 VirC1 protein AAA_24 PF13479.6 CQR57764.1 - 0.001 18.8 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 CQR57764.1 - 0.0012 18.5 3.4 0.003 17.2 1.6 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 CQR57764.1 - 0.004 17.0 1.1 0.019 14.8 0.2 2.2 2 1 1 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 CQR57764.1 - 0.043 12.8 1.6 0.12 11.3 0.9 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 CQR57764.1 - 0.046 13.5 0.7 0.15 11.9 0.7 1.7 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 CQR57764.1 - 0.07 13.0 0.5 0.24 11.3 0.7 1.8 2 1 0 2 2 2 0 NTPase AAA_26 PF13500.6 CQR57764.1 - 0.078 12.8 7.9 1.2 9.0 7.9 2.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR57764.1 - 0.081 12.5 1.8 0.23 11.0 1.8 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR57764.1 - 0.14 12.1 1.2 10 6.0 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 CQR57764.1 - 0.19 11.4 0.4 0.34 10.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR57764.1 - 0.24 11.5 0.3 0.37 10.9 0.3 1.5 1 1 0 1 1 1 0 AAA domain MinC_C PF03775.16 CQR57765.1 - 2.7e-29 101.1 0.0 4.3e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, C-terminal domain MreD PF04093.12 CQR57766.1 - 4.4e-15 56.1 21.4 4.8e-15 56.0 21.4 1.0 1 0 0 1 1 1 1 rod shape-determining protein MreD Orbi_VP5 PF00901.17 CQR57766.1 - 1.3 7.3 2.9 0.8 8.0 0.7 1.6 2 0 0 2 2 2 0 Orbivirus outer capsid protein VP5 DUF3021 PF11457.8 CQR57766.1 - 1.6 9.1 15.9 2.3 8.6 4.5 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) DUF4191 PF13829.6 CQR57766.1 - 2 7.7 9.0 0.38 10.1 2.3 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4191) MreC PF04085.14 CQR57767.1 - 3e-34 118.1 1.4 1.1e-33 116.2 1.6 1.7 1 1 1 2 2 2 2 rod shape-determining protein MreC MreB_Mbl PF06723.13 CQR57768.1 - 1.9e-155 516.7 9.1 2.1e-155 516.5 9.1 1.0 1 0 0 1 1 1 1 MreB/Mbl protein Actin PF00022.19 CQR57768.1 - 6.7e-12 44.7 0.1 4.7e-07 28.8 0.0 2.1 1 1 0 2 2 2 2 Actin HSP70 PF00012.20 CQR57768.1 - 4.4e-10 38.4 3.7 1.7e-09 36.4 0.4 2.3 1 1 1 2 2 2 2 Hsp70 protein FtsA PF14450.6 CQR57768.1 - 3.4e-09 37.0 0.2 3.4e-09 37.0 0.2 2.4 2 1 0 2 2 2 1 Cell division protein FtsA PilM_2 PF11104.8 CQR57768.1 - 7.9e-06 25.1 0.2 0.035 13.1 0.0 2.6 2 1 0 2 2 2 2 Type IV pilus assembly protein PilM; EutA PF06277.11 CQR57768.1 - 0.0031 16.4 3.0 0.0045 15.9 0.2 2.2 2 1 0 2 2 2 1 Ethanolamine utilisation protein EutA DDR PF08841.10 CQR57768.1 - 0.0073 15.3 1.5 0.01 14.9 0.4 1.8 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain RadC PF04002.15 CQR57769.1 - 5.2e-47 158.8 0.0 7.9e-47 158.2 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain HHH PF00633.23 CQR57769.1 - 0.00019 21.2 0.1 0.00054 19.7 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 CQR57769.1 - 0.00049 20.6 0.2 0.001 19.7 0.2 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain Prok-JAB PF14464.6 CQR57769.1 - 0.00062 19.5 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HHH_2 PF12826.7 CQR57769.1 - 0.017 15.2 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Maf PF02545.14 CQR57770.1 - 1.8e-58 197.1 0.0 2e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein DUF4321 PF14209.6 CQR57771.1 - 2.9e-10 39.8 1.2 2.9e-10 39.8 1.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4321) FtsX PF02687.21 CQR57771.1 - 0.0084 16.6 3.0 0.01 16.3 3.0 1.1 1 0 0 1 1 1 1 FtsX-like permease family DUF3611 PF12263.8 CQR57771.1 - 0.018 14.9 0.7 0.023 14.6 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) SPOR PF05036.13 CQR57773.1 - 1.9e-05 24.9 1.1 4.5e-05 23.7 0.2 2.2 2 0 0 2 2 2 1 Sporulation related domain DUF3180 PF11377.8 CQR57773.1 - 0.21 11.7 2.7 0.54 10.4 2.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) Glyco_trans_1_4 PF13692.6 CQR57774.1 - 3.3e-12 47.0 0.1 6.2e-12 46.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57774.1 - 8.3e-08 32.5 0.5 8.9e-07 29.2 0.0 2.8 2 2 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57774.1 - 0.0056 16.7 0.1 0.012 15.6 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 CQR57774.1 - 0.055 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57775.1 - 1.1e-23 84.1 0.0 1.7e-23 83.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 CQR57775.1 - 2.1e-06 27.4 0.0 3.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57775.1 - 0.00017 21.9 0.0 0.00033 21.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57775.1 - 0.0034 17.4 0.0 0.0065 16.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_tran_28_C PF04101.16 CQR57775.1 - 0.11 12.4 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Mur_ligase_M PF08245.12 CQR57776.1 - 7.6e-27 94.6 0.0 1.3e-26 93.8 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CQR57776.1 - 1.6e-21 76.3 0.0 7.7e-21 74.1 0.0 2.1 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 CQR57776.1 - 6.4e-19 68.1 0.2 2.8e-18 66.0 0.1 2.2 2 0 0 2 2 2 1 Mur ligase family, catalytic domain BRCT PF00533.26 CQR57776.1 - 0.037 14.4 0.0 2.2 8.7 0.0 2.5 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain Mur_ligase_M PF08245.12 CQR57777.1 - 1.1e-14 54.8 0.1 2.8e-14 53.6 0.1 1.6 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CQR57777.1 - 5.7e-07 29.7 0.0 2e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain TAL_FSA PF00923.19 CQR57777.1 - 0.053 12.9 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 Transaldolase/Fructose-6-phosphate aldolase tRNA-synt_1 PF00133.22 CQR57778.1 - 2.8e-224 745.9 1.1 5.5e-223 741.6 1.1 2.4 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 CQR57778.1 - 2.4e-44 151.0 0.2 4.4e-44 150.1 0.2 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 CQR57778.1 - 7.8e-29 100.6 0.6 9e-15 54.3 0.2 3.1 2 2 0 2 2 2 2 tRNA synthetases class I (M) Val_tRNA-synt_C PF10458.9 CQR57778.1 - 2.4e-22 79.0 7.1 5.5e-22 77.8 7.1 1.7 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1_2 PF13603.6 CQR57778.1 - 3.9e-11 42.8 0.0 2.5e-08 33.6 0.0 2.6 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 CQR57778.1 - 1.3e-05 24.7 0.0 0.0022 17.4 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 CQR57778.1 - 0.0066 15.4 0.0 0.026 13.5 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) TMCO5 PF14992.6 CQR57778.1 - 0.17 11.4 1.3 0.34 10.4 1.3 1.4 1 0 0 1 1 1 0 TMCO5 family tRNA-synt_1b PF00579.25 CQR57778.1 - 0.23 10.8 1.7 0.49 9.7 0.0 2.2 3 0 0 3 3 3 0 tRNA synthetases class I (W and Y) Beta_helix PF13229.6 CQR57779.1 - 2.1e-16 60.1 98.0 3e-10 40.2 38.4 3.6 1 1 2 3 3 3 3 Right handed beta helix region DUF1565 PF07602.11 CQR57779.1 - 6.6e-08 32.2 38.0 8.1e-07 28.6 16.2 3.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) DUF5123 PF17161.4 CQR57779.1 - 0.0002 22.4 5.2 0.0002 22.4 5.2 3.4 2 1 0 3 3 3 1 Domain of unknown function (DUF5123) NosD PF05048.13 CQR57779.1 - 0.024 13.9 46.4 0.044 13.1 29.6 2.9 1 1 1 2 2 2 0 Periplasmic copper-binding protein (NosD) LysM PF01476.20 CQR57780.1 - 2.3e-07 30.8 0.0 3.9e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 LysM domain Glycos_transf_1 PF00534.20 CQR57781.1 - 1.6e-35 122.2 0.0 3.1e-35 121.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57781.1 - 3e-26 92.5 0.1 7.7e-26 91.1 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57781.1 - 9.5e-19 68.0 0.0 2.1e-18 66.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR57781.1 - 1.3e-16 61.4 0.0 1.3e-15 58.2 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 CQR57781.1 - 1.8e-06 28.0 0.0 7e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 CQR57781.1 - 1.7e-05 25.1 0.0 4.2e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 CQR57781.1 - 0.0039 16.9 0.0 0.11 12.1 0.0 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain GTP_EFTU PF00009.27 CQR57781.1 - 0.084 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain GGDEF PF00990.21 CQR57782.1 - 3.1e-29 101.8 0.6 4.1e-29 101.4 0.6 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Prion_bPrPp PF11587.8 CQR57782.1 - 6.1 6.8 6.7 1.6 8.6 2.0 2.4 2 0 0 2 2 2 0 Major prion protein bPrPp - N terminal Zn_peptidase PF04228.13 CQR57783.1 - 2e-115 385.2 1.3 2.2e-115 385.1 1.3 1.0 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase Reprolysin_3 PF13582.6 CQR57783.1 - 0.065 13.8 0.1 0.16 12.5 0.1 1.8 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like TPR_4 PF07721.14 CQR57783.1 - 0.13 13.0 0.4 0.36 11.6 0.4 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Peptidase_M78 PF06114.13 CQR57783.1 - 0.16 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain PseudoU_synth_2 PF00849.22 CQR57785.1 - 1.6e-27 96.5 0.3 3.1e-27 95.6 0.1 1.5 2 0 0 2 2 2 1 RNA pseudouridylate synthase Aminotran_3 PF00202.21 CQR57786.1 - 4.5e-73 246.2 0.0 5.7e-73 245.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III ALAD PF00490.21 CQR57787.1 - 5.8e-148 492.2 0.0 6.5e-148 492.1 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase HEM4 PF02602.15 CQR57788.1 - 2.1e-60 204.0 0.1 2.9e-60 203.5 0.1 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.20 CQR57788.1 - 1.6e-48 165.5 0.4 5.7e-48 163.7 0.1 2.0 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 CQR57788.1 - 0.036 14.4 0.1 0.72 10.2 0.0 2.8 3 1 0 3 3 3 0 Radical SAM superfamily DAHP_snth_FXD PF18152.1 CQR57788.1 - 0.051 13.4 0.2 0.84 9.5 0.0 3.0 4 0 0 4 4 4 0 DAHP synthase ferredoxin-like domain DUF1967 PF09269.11 CQR57788.1 - 0.084 12.8 0.0 1.5 8.9 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1967) Porphobil_deam PF01379.20 CQR57789.1 - 2.1e-82 275.6 0.0 2.5e-82 275.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 CQR57789.1 - 1.1e-18 67.4 0.1 1.8e-18 66.7 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain NAD_binding_7 PF13241.6 CQR57790.1 - 1.3e-26 93.0 0.0 3e-26 91.9 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 CQR57790.1 - 2.4e-06 26.9 0.2 5.2e-06 25.8 0.2 1.6 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Aldolase PF01081.19 CQR57790.1 - 0.025 14.0 1.6 0.15 11.5 0.4 2.0 1 1 1 2 2 2 0 KDPG and KHG aldolase Shikimate_DH PF01488.20 CQR57790.1 - 0.044 13.9 0.2 0.08 13.0 0.2 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cytochrom_C_asm PF01578.20 CQR57792.1 - 4.8e-14 52.6 18.7 1.6e-13 51.0 18.7 2.0 1 1 0 1 1 1 1 Cytochrome C assembly protein O-ag_pol_Wzy PF14296.6 CQR57792.1 - 0.00097 17.9 3.2 0.0013 17.5 3.2 1.2 1 0 0 1 1 1 1 O-antigen polysaccharide polymerase Wzy DUF3169 PF11368.8 CQR57792.1 - 0.039 13.5 1.9 0.046 13.2 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) CcmD PF04995.14 CQR57792.1 - 1.2 9.3 0.0 1.2 9.3 0.0 3.7 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) GlutR_N PF05201.15 CQR57793.1 - 8e-48 161.9 0.2 1.8e-47 160.8 0.1 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 CQR57793.1 - 2.9e-43 147.3 0.0 7.7e-43 145.9 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 CQR57793.1 - 1.5e-23 83.0 0.1 3.4e-23 81.9 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 CQR57793.1 - 7.3e-06 26.5 0.0 1.9e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 CQR57793.1 - 0.00041 20.7 0.1 0.0011 19.4 0.1 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 CQR57793.1 - 0.0028 17.9 0.1 0.0062 16.8 0.1 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Rrf2 PF02082.20 CQR57793.1 - 0.058 13.8 0.0 0.15 12.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator IlvN PF07991.12 CQR57793.1 - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pribosyltran PF00156.27 CQR57796.1 - 1.8e-08 34.1 0.0 2.8e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain IMPDH PF00478.25 CQR57797.1 - 1.6e-111 372.7 0.0 1.8e-111 372.5 0.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 CQR57797.1 - 1.1e-10 41.8 0.1 0.0013 19.1 0.0 3.3 3 0 0 3 3 3 2 CBS domain FMN_dh PF01070.18 CQR57797.1 - 3.9e-07 29.4 0.4 3.9e-07 29.4 0.4 1.9 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 CQR57797.1 - 0.00082 18.6 1.8 0.0045 16.2 0.9 2.1 1 1 1 2 2 2 1 Conserved region in glutamate synthase NMO PF03060.15 CQR57797.1 - 0.00087 18.8 1.3 0.31 10.4 0.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Aldolase PF01081.19 CQR57797.1 - 0.057 12.8 0.0 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 KDPG and KHG aldolase Pribosyltran PF00156.27 CQR57798.1 - 5.3e-26 91.0 0.1 6e-26 90.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HD PF01966.22 CQR57799.1 - 1.5e-15 57.5 0.6 2.9e-15 56.6 0.6 1.4 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR57799.1 - 3.4e-11 43.2 0.3 9.4e-11 41.8 0.3 1.8 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 CQR57799.1 - 0.00074 19.0 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 HDOD domain Peptidase_M49 PF03571.15 CQR57799.1 - 0.1 10.9 0.0 0.14 10.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M49 Glyco_hydro_1 PF00232.18 CQR57802.1 - 2.5e-142 474.5 0.0 2.8e-142 474.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 1 PTS_EIIA_1 PF00358.20 CQR57803.1 - 1e-46 157.8 0.1 2.1e-46 156.8 0.1 1.5 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PTS_EIIC PF02378.18 CQR57803.1 - 2.9e-26 92.3 37.7 2.9e-26 92.3 37.7 1.5 1 1 0 1 1 1 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR57803.1 - 4.3e-13 48.5 0.1 8.9e-13 47.5 0.1 1.5 1 0 0 1 1 1 1 phosphotransferase system, EIIB Biotin_lipoyl PF00364.22 CQR57803.1 - 0.014 15.2 0.2 0.12 12.2 0.0 2.4 2 0 0 2 2 2 0 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 CQR57803.1 - 0.057 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Biotin-lipoyl like YqfD PF06898.11 CQR57803.1 - 0.16 10.8 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD PRD PF00874.20 CQR57804.1 - 9.1e-42 141.3 6.3 9.7e-24 83.5 0.1 2.4 3 0 0 3 3 3 2 PRD domain CAT_RBD PF03123.15 CQR57804.1 - 1.2e-21 76.4 0.7 2.7e-21 75.3 0.7 1.6 1 0 0 1 1 1 1 CAT RNA binding domain DUF1054 PF06335.12 CQR57804.1 - 0.051 13.5 0.2 0.25 11.2 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1054) SLH PF00395.20 CQR57805.1 - 5.2e-17 61.6 2.7 3e-09 36.7 0.1 3.5 3 0 0 3 3 3 2 S-layer homology domain Abhydrolase_2 PF02230.16 CQR57805.1 - 1.6e-07 31.3 0.0 6e-07 29.5 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 CQR57805.1 - 1.4e-06 27.8 0.5 0.0061 15.9 0.0 2.5 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Esterase_phd PF10503.9 CQR57805.1 - 1.4e-05 24.7 0.0 4.2e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 Esterase PHB depolymerase Peptidase_S9 PF00326.21 CQR57805.1 - 0.00036 20.1 2.6 0.0079 15.7 0.1 3.3 3 1 1 4 4 4 1 Prolyl oligopeptidase family Esterase PF00756.20 CQR57805.1 - 0.00052 19.7 0.0 0.00093 18.9 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Abhydrolase_6 PF12697.7 CQR57805.1 - 0.0061 17.2 0.0 0.01 16.5 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 CQR57805.1 - 0.036 12.7 0.1 0.11 11.1 0.1 1.7 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) PadR PF03551.14 CQR57806.1 - 2.8e-16 59.2 0.1 5.8e-16 58.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 CQR57806.1 - 4.7e-05 23.2 0.3 0.00038 20.2 0.0 2.2 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Vir_act_alpha_C PF10400.9 CQR57806.1 - 0.022 15.5 3.6 0.025 15.3 2.3 1.7 2 0 0 2 2 2 0 Virulence activator alpha C-term p450 PF00067.22 CQR57807.1 - 5.7e-45 153.9 0.1 9.2e-33 113.7 0.1 3.0 2 1 0 2 2 2 2 Cytochrome P450 Abhydrolase_3 PF07859.13 CQR57808.1 - 5.8e-13 49.2 0.0 8.6e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 CQR57808.1 - 1.6e-05 24.5 0.0 0.0058 16.1 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 CQR57808.1 - 3.3e-05 23.5 0.0 0.1 12.1 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 CQR57808.1 - 0.017 14.9 0.0 1.5 8.6 0.0 2.4 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 CQR57808.1 - 0.05 12.9 0.1 0.44 9.8 0.0 2.3 2 1 0 2 2 2 0 Serine aminopeptidase, S33 Esterase_phd PF10503.9 CQR57808.1 - 0.098 12.1 0.0 0.31 10.5 0.0 1.8 2 0 0 2 2 2 0 Esterase PHB depolymerase Bac_rhamnosid6H PF17389.2 CQR57809.1 - 6e-99 331.5 4.0 1e-97 327.4 4.0 2.6 1 1 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Bac_rhamnosid_N PF08531.10 CQR57809.1 - 2.9e-44 150.9 0.4 1.3e-43 148.8 0.3 2.0 2 0 0 2 2 2 1 Alpha-L-rhamnosidase N-terminal domain Bac_rhamnosid PF05592.11 CQR57809.1 - 1.4e-24 86.1 0.0 3e-24 85.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase concanavalin-like domain Bac_rhamnosid_C PF17390.2 CQR57809.1 - 2e-19 69.2 0.0 5.4e-19 67.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase C-terminal domain Glyco_hydro_125 PF06824.11 CQR57809.1 - 0.022 13.6 0.0 0.042 12.7 0.0 1.3 1 0 0 1 1 1 0 Metal-independent alpha-mannosidase (GH125) VirE_N PF08800.10 CQR57809.1 - 0.022 14.8 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 VirE N-terminal domain HTH_18 PF12833.7 CQR57810.1 - 6.9e-16 58.3 0.0 1.1e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57810.1 - 2.5e-11 43.4 0.1 3.1e-05 24.0 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR57810.1 - 2.3e-08 33.6 0.1 6.8e-08 32.1 0.0 1.8 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 CQR57810.1 - 1.7e-07 31.2 0.0 3.2e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 CQR57810.1 - 0.041 13.8 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase HTH_18 PF12833.7 CQR57811.1 - 3.1e-18 65.8 0.1 6.5e-18 64.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57811.1 - 1.2e-14 53.9 0.8 9.5e-07 28.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57811.1 - 9.7e-08 32.0 0.2 4.5e-07 29.8 0.1 2.1 2 1 0 2 2 2 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57811.1 - 4.1e-07 29.6 0.0 6.3e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain CENP-C_C PF11699.8 CQR57811.1 - 0.05 13.8 0.0 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 Mif2/CENP-C like Cas_Cmr5 PF09701.10 CQR57811.1 - 0.2 12.0 1.9 0.38 11.1 1.9 1.4 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr5) Glyco_hydro2_C5 PF18565.1 CQR57812.1 - 9.9e-26 89.6 0.7 2.4e-24 85.1 0.1 2.6 2 0 0 2 2 2 1 Glycoside hydrolase family 2 C-terminal domain 5 Glyco_hydro_2_C PF02836.17 CQR57812.1 - 8e-22 77.7 0.6 1.7e-21 76.7 0.6 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.21 CQR57812.1 - 9.8e-21 74.5 0.1 2e-20 73.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF4982 PF16355.5 CQR57812.1 - 2.1e-19 69.2 0.9 1.6e-18 66.4 0.2 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4982) Glyco_hydro_2_N PF02837.18 CQR57812.1 - 3.4e-10 40.1 0.3 3.4e-10 40.1 0.3 2.0 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain BetaGal_dom4_5 PF13364.6 CQR57812.1 - 0.025 15.1 0.0 0.089 13.4 0.0 2.0 1 0 0 1 1 1 0 Beta-galactosidase jelly roll domain Glyco_hydro_43 PF04616.14 CQR57813.1 - 2.4e-18 66.4 0.2 2.6e-08 33.5 0.0 2.4 2 0 0 2 2 2 2 Glycosyl hydrolases family 43 F5_F8_type_C PF00754.25 CQR57813.1 - 3.1e-09 37.0 0.2 0.00018 21.6 0.3 2.5 2 0 0 2 2 2 2 F5/8 type C domain Glyco_hydro_43 PF04616.14 CQR57814.1 - 2.2e-104 348.8 0.1 3e-104 348.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR57814.1 - 6.1e-58 195.9 0.0 2.2e-57 194.1 0.0 2.0 3 0 0 3 3 3 1 Beta xylosidase C-terminal Concanavalin A-like domain Glyco_hydro_32N PF00251.20 CQR57814.1 - 0.011 15.4 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 32 N-terminal domain DUF1349 PF07081.11 CQR57814.1 - 0.037 13.8 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) Glyco_hydro_68 PF02435.16 CQR57814.1 - 0.079 11.8 0.0 0.13 11.0 0.0 1.4 1 1 0 1 1 1 0 Levansucrase/Invertase Glyco_hydro_106 PF17132.4 CQR57815.1 - 1.5e-14 53.3 0.1 5.4e-13 48.2 0.1 2.8 1 1 0 1 1 1 1 alpha-L-rhamnosidase Glyco_hydro_2_N PF02837.18 CQR57815.1 - 0.0071 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain DUF1935 PF09149.10 CQR57815.1 - 0.023 15.1 0.8 0.72 10.3 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1935) Stomoxyn PF11585.8 CQR57815.1 - 0.19 11.8 0.2 1.2 9.2 0.0 2.4 3 0 0 3 3 3 0 Insect antimicrobial peptide, stomoxyn SBP_bac_1 PF01547.25 CQR57816.1 - 7.4e-11 42.5 12.5 1.5e-10 41.6 12.5 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR57816.1 - 0.0028 18.3 1.4 0.016 15.9 1.4 2.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3502) BPD_transp_1 PF00528.22 CQR57817.1 - 4e-14 52.8 11.1 4e-14 52.8 11.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrbC PF04956.13 CQR57817.1 - 0.073 13.3 0.2 0.073 13.3 0.2 2.6 3 0 0 3 3 3 0 TrbC/VIRB2 family BPD_transp_1 PF00528.22 CQR57818.1 - 1e-10 41.7 14.7 1e-10 41.7 14.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Response_reg PF00072.24 CQR57820.1 - 7.6e-24 84.0 0.0 1.7e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR57820.1 - 1.4e-22 79.7 0.1 4.9e-22 78.0 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57820.1 - 8.2e-14 51.3 0.1 5.7e-06 26.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR57820.1 - 2.2e-07 31.2 0.0 5.1e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 GGDEF-like domain His_kinase PF06580.13 CQR57821.1 - 7.6e-21 74.2 3.7 7.6e-21 74.2 3.7 2.4 3 0 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR57821.1 - 7.9e-13 48.8 2.0 7.9e-13 48.8 2.0 2.1 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR57821.1 - 1.6e-05 25.2 0.7 3.8e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR57821.1 - 0.00019 21.9 0.0 0.00039 20.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR57821.1 - 0.00036 20.4 0.1 0.00073 19.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phi-29_GP16_7 PF06720.11 CQR57821.1 - 0.16 11.8 1.7 0.2 11.5 0.2 1.9 2 0 0 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 UPF0542 PF15086.6 CQR57821.1 - 0.42 10.6 2.3 2.7 8.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0542 ABC2_membrane_4 PF12730.7 CQR57822.1 - 2.7e-18 66.5 9.6 2.7e-18 66.5 9.6 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein TMIE PF16038.5 CQR57822.1 - 0.39 10.6 3.7 0.12 12.2 0.5 2.0 2 0 0 2 2 2 0 TMIE protein ABC2_membrane_4 PF12730.7 CQR57823.1 - 2.2e-19 70.1 5.2 2.2e-19 70.1 5.2 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR57823.1 - 0.00036 19.9 18.0 0.00057 19.3 18.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR57823.1 - 0.00038 20.1 6.6 0.00038 20.1 6.6 1.9 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 CQR57824.1 - 1.2e-28 100.3 0.1 3.9e-28 98.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR57824.1 - 1.2e-13 51.5 2.1 6.2e-09 36.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR57824.1 - 0.0051 17.3 0.1 0.01 16.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 CQR57824.1 - 0.024 14.4 0.2 0.073 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain DUF4162 PF13732.6 CQR57824.1 - 0.026 15.2 0.1 0.077 13.7 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) SRP54 PF00448.22 CQR57824.1 - 0.041 13.5 0.1 0.22 11.1 0.0 2.0 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 CQR57824.1 - 0.042 14.1 0.1 0.19 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR57824.1 - 0.072 13.0 0.1 0.34 10.8 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase BET PF17035.5 CQR57824.1 - 0.079 13.1 0.1 0.26 11.5 0.0 2.0 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation AAA_15 PF13175.6 CQR57824.1 - 0.11 12.1 0.1 0.44 10.2 0.1 1.7 1 1 1 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 CQR57824.1 - 0.17 11.2 0.0 0.36 10.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Response_reg PF00072.24 CQR57825.1 - 4.6e-26 91.2 0.0 6.5e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR57825.1 - 4.6e-22 77.9 0.0 8e-22 77.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HisKA PF00512.25 CQR57826.1 - 1.2e-15 57.3 0.2 2.4e-15 56.3 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 CQR57826.1 - 6.3e-15 55.6 0.0 1.1e-14 54.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR57826.1 - 0.012 15.5 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sigma_reg_N PF13800.6 CQR57827.1 - 0.073 13.4 0.2 0.073 13.4 0.2 4.6 5 1 1 6 6 6 0 Sigma factor regulator N-terminal ABC2_membrane_3 PF12698.7 CQR57827.1 - 0.12 11.4 24.9 0.35 9.9 24.4 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR57827.1 - 0.13 12.2 30.0 0.036 14.0 9.5 3.5 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC_tran PF00005.27 CQR57828.1 - 7.5e-28 97.7 0.0 1.1e-27 97.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57828.1 - 2.9e-10 40.4 0.0 5.7e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR57828.1 - 0.00014 22.5 0.0 0.00021 21.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR57828.1 - 0.00016 21.2 0.0 0.14 11.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR57828.1 - 0.0018 18.1 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR57828.1 - 0.022 14.5 0.1 0.043 13.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 CQR57828.1 - 0.029 14.5 0.0 0.14 12.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 CQR57828.1 - 0.061 10.8 0.2 0.086 10.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Zeta_toxin PF06414.12 CQR57828.1 - 0.095 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MukB PF04310.12 CQR57828.1 - 0.12 12.1 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 CQR57828.1 - 0.13 12.0 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 CQR57828.1 - 0.13 12.6 0.1 0.51 10.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 CQR57828.1 - 0.18 11.8 0.2 0.34 10.9 0.2 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 CQR57828.1 - 0.39 9.3 0.5 1.8 7.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain VanZ PF04892.12 CQR57829.1 - 8e-05 23.3 1.3 8.2e-05 23.3 1.3 1.1 1 0 0 1 1 1 1 VanZ like family DUF4131 PF13567.6 CQR57830.1 - 0.96 9.1 3.5 1.1 8.9 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) HATPase_c PF02518.26 CQR57831.1 - 5.4e-23 81.6 0.1 9.7e-23 80.8 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR57831.1 - 3.8e-11 42.8 0.0 7.6e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 CQR57831.1 - 2.6e-08 33.7 1.0 5.1e-08 32.7 0.2 1.8 2 0 0 2 2 2 1 GHKL domain Response_reg PF00072.24 CQR57832.1 - 8.4e-31 106.4 0.4 1.2e-30 105.9 0.4 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR57832.1 - 3.5e-26 91.1 0.0 5.7e-26 90.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR57832.1 - 0.012 15.8 0.0 0.024 14.9 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain GerE PF00196.19 CQR57832.1 - 0.024 14.2 1.1 0.89 9.2 0.3 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF3244 PF11589.8 CQR57833.1 - 0.12 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) PSII_BNR PF14870.6 CQR57834.1 - 9.4e-13 48.1 7.6 3.7e-05 23.1 0.5 4.0 1 1 1 3 3 3 3 Photosynthesis system II assembly factor YCF48 Sortilin-Vps10 PF15902.5 CQR57834.1 - 9.6e-12 44.4 8.1 1.5e-07 30.6 0.2 3.4 2 1 1 3 3 3 3 Sortilin, neurotensin receptor 3, BNR_2 PF13088.6 CQR57834.1 - 4.2e-09 36.1 3.4 7e-07 28.8 0.6 3.0 2 1 0 2 2 2 2 BNR repeat-like domain BNR PF02012.20 CQR57834.1 - 1.7e-05 24.1 34.4 0.47 10.6 1.5 7.2 7 0 0 7 7 7 5 BNR/Asp-box repeat CHB_HEX_C PF03174.13 CQR57834.1 - 0.015 15.3 5.5 8.8 6.4 0.1 4.2 5 0 0 5 5 5 0 Chitobiase/beta-hexosaminidase C-terminal domain Acyl_transf_3 PF01757.22 CQR57835.1 - 4.3e-24 85.2 37.3 5.5e-24 84.9 37.3 1.0 1 0 0 1 1 1 1 Acyltransferase family FeoB_C PF07664.12 CQR57835.1 - 0.33 10.7 7.0 1.1 9.0 0.8 3.2 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus Peptidase_U4 PF03419.13 CQR57835.1 - 7 5.8 16.6 0.15 11.3 10.0 1.6 2 0 0 2 2 2 0 Sporulation factor SpoIIGA Acyl_transf_3 PF01757.22 CQR57836.1 - 1.4e-06 27.6 0.9 1.4e-06 27.6 0.9 3.3 1 1 2 3 3 3 1 Acyltransferase family Cas_Csx9 PF09658.10 CQR57836.1 - 0.1 11.7 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csx9) DUF5056 PF16479.5 CQR57836.1 - 2.6 8.3 6.7 0.39 11.0 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5056) DUF3792 PF12670.7 CQR57836.1 - 9 6.5 23.3 2.8 8.2 7.7 3.5 2 1 0 3 3 3 0 Protein of unknown function (DUF3792) Acyl_transf_3 PF01757.22 CQR57837.1 - 4.5e-23 81.9 41.5 5.5e-23 81.6 41.5 1.1 1 0 0 1 1 1 1 Acyltransferase family DUF218 PF02698.17 CQR57840.1 - 3.6e-24 85.2 0.0 4.8e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 DUF218 domain GLF PF03275.13 CQR57841.1 - 1.2e-81 273.4 4.7 1.9e-81 272.7 4.7 1.3 1 0 0 1 1 1 1 UDP-galactopyranose mutase NAD_binding_8 PF13450.6 CQR57841.1 - 5.2e-17 61.8 0.0 1.3e-16 60.5 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 CQR57841.1 - 2.5e-05 23.8 0.0 7.4e-05 22.2 0.0 1.8 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 CQR57841.1 - 0.011 15.2 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR57841.1 - 0.029 13.4 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Polysacc_synt PF01943.17 CQR57842.1 - 1e-25 90.7 29.3 1e-25 90.7 29.3 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 CQR57842.1 - 2.9e-21 76.1 21.5 2.9e-21 76.1 21.5 3.9 3 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 CQR57842.1 - 2.8e-07 29.5 44.6 2.6e-06 26.3 44.6 2.0 1 1 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_3 PF13440.6 CQR57842.1 - 8.4e-07 28.5 21.0 8.4e-07 28.5 21.0 2.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein LIM_bind PF01803.16 CQR57842.1 - 0.071 12.6 0.7 0.12 11.9 0.1 1.6 2 0 0 2 2 2 0 LIM-domain binding protein Glyco_trans_1_4 PF13692.6 CQR57843.1 - 1.4e-16 61.1 0.0 2e-15 57.4 0.0 2.4 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 CQR57843.1 - 1.8e-15 56.9 0.8 2.3e-14 53.3 0.3 2.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57843.1 - 8e-06 26.0 0.0 1.3e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 CQR57843.1 - 0.0019 18.6 0.0 0.0047 17.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Myb_DNA-bind_2 PF08914.11 CQR57843.1 - 0.18 12.0 0.0 0.39 10.9 0.0 1.5 1 0 0 1 1 1 0 Rap1 Myb domain Wzy_C PF04932.15 CQR57844.1 - 1.2 8.8 27.3 0.024 14.3 10.7 3.8 1 1 2 3 3 3 0 O-Antigen ligase Glycos_transf_1 PF00534.20 CQR57845.1 - 4.6e-32 110.9 0.4 6.2e-32 110.5 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57845.1 - 5.7e-26 91.5 0.0 8.4e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57845.1 - 2.2e-08 34.3 0.0 3.3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57845.1 - 0.029 14.4 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 DUF3882 PF07066.11 CQR57845.1 - 0.031 14.3 0.2 0.062 13.4 0.2 1.4 1 0 0 1 1 1 0 Lactococcus phage M3 protein Peptidase_U32_C PF16325.5 CQR57845.1 - 0.066 13.5 0.0 0.23 11.7 0.0 1.9 2 0 0 2 2 2 0 Peptidase family U32 C-terminal domain Glyco_transf_4 PF13439.6 CQR57846.1 - 0.00042 20.4 0.0 0.0017 18.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 CQR57846.1 - 0.0067 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase PF01370.21 CQR57847.1 - 5.1e-55 186.6 0.0 6.2e-55 186.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR57847.1 - 5.8e-54 183.7 0.0 6.9e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 CQR57847.1 - 5.4e-21 74.8 0.0 7.2e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 CQR57847.1 - 8.5e-19 67.7 0.0 1.1e-18 67.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 CQR57847.1 - 2.9e-16 59.5 0.0 9.2e-15 54.5 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 CQR57847.1 - 7.7e-09 35.1 0.5 1e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein KR PF08659.10 CQR57847.1 - 6.5e-05 22.9 0.0 0.00014 21.8 0.0 1.6 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 CQR57847.1 - 8.9e-05 22.0 0.1 0.00022 20.8 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 CQR57847.1 - 0.0039 17.1 0.0 0.0087 16.0 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding CofC PF01983.16 CQR57847.1 - 0.017 14.3 0.1 0.027 13.6 0.1 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like HSV_VP16_C PF12149.8 CQR57847.1 - 0.2 11.7 1.5 3.9 7.6 0.5 2.6 2 0 0 2 2 2 0 Herpes simplex virus virion protein 16 C terminal UDPG_MGDP_dh_N PF03721.14 CQR57848.1 - 2e-68 229.7 1.6 3.8e-68 228.7 1.6 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 CQR57848.1 - 5.8e-38 129.0 0.0 1.2e-37 128.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 CQR57848.1 - 1e-30 106.3 0.1 2.6e-27 95.3 0.0 2.7 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ApbA PF02558.16 CQR57848.1 - 8.4e-06 25.5 0.1 1.6e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 CQR57848.1 - 2.4e-05 24.8 1.0 0.061 13.9 0.1 4.1 3 2 1 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 CQR57848.1 - 0.00011 22.2 0.3 0.00036 20.5 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 CQR57848.1 - 0.00017 21.8 2.4 0.00044 20.5 0.1 2.8 4 1 0 4 4 4 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 CQR57848.1 - 0.00036 19.9 0.2 0.0011 18.3 0.1 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.26 CQR57848.1 - 0.00038 20.4 0.1 0.052 13.5 0.0 2.7 2 1 0 3 3 3 1 Zinc-binding dehydrogenase NAD_Gly3P_dh_N PF01210.23 CQR57848.1 - 0.0018 18.3 0.9 0.011 15.7 0.2 2.6 3 1 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 CQR57848.1 - 0.0033 18.0 3.7 0.0035 17.9 0.6 2.8 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase OTCace PF00185.24 CQR57848.1 - 0.015 15.4 0.1 0.56 10.3 0.1 2.8 2 1 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AlaDh_PNT_C PF01262.21 CQR57848.1 - 0.016 14.5 0.3 0.036 13.3 0.3 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain pXO2-72 PF17443.2 CQR57848.1 - 0.028 14.7 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 FAD_binding_3 PF01494.19 CQR57848.1 - 0.057 12.7 0.1 0.11 11.7 0.1 1.5 1 0 0 1 1 1 0 FAD binding domain TrkA_N PF02254.18 CQR57848.1 - 0.2 11.9 2.4 0.38 11.0 0.1 2.7 3 1 0 3 3 3 0 TrkA-N domain SepF PF04472.12 CQR57848.1 - 0.22 11.8 1.4 20 5.5 0.0 3.1 3 1 0 3 3 3 0 Cell division protein SepF Semialdhyde_dh PF01118.24 CQR57848.1 - 6.9 7.1 5.9 8 6.9 1.4 3.2 3 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain Glyco_trans_4_2 PF13477.6 CQR57849.1 - 4.6e-28 98.0 0.0 6.7e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 CQR57849.1 - 3.6e-24 85.2 0.0 6e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57849.1 - 3.6e-19 69.5 0.0 6.1e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57849.1 - 5.1e-08 33.2 0.0 1e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57849.1 - 1.6e-06 28.2 0.0 2.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR57849.1 - 0.00013 22.5 0.0 0.00018 22.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Epimerase PF01370.21 CQR57850.1 - 8.9e-19 67.9 0.0 8.6e-18 64.7 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 CQR57850.1 - 6.7e-11 41.8 0.0 1.1e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 CQR57850.1 - 5.9e-10 38.6 0.0 1.4e-08 34.1 0.0 2.0 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 CQR57850.1 - 1.1e-05 24.7 0.0 1.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein GDP_Man_Dehyd PF16363.5 CQR57850.1 - 6.7e-05 22.4 0.0 0.00016 21.2 0.0 1.6 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 CQR57850.1 - 0.00087 18.5 1.3 0.025 13.7 0.5 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 CQR57850.1 - 0.0096 15.8 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Methylase_S PF01420.19 CQR57850.1 - 0.16 12.2 3.3 1.6 8.9 0.5 2.5 2 1 0 2 2 2 0 Type I restriction modification DNA specificity domain Bac_transf PF02397.16 CQR57851.1 - 1.1e-61 207.7 0.1 1.2e-61 207.5 0.1 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase Cu_amine_oxidN1 PF07833.11 CQR57852.1 - 6.9e-30 103.4 2.0 9.2e-16 58.1 0.1 2.4 1 1 2 3 3 3 3 Copper amine oxidase N-terminal domain DUF4854 PF16146.5 CQR57852.1 - 0.08 13.3 0.3 0.26 11.6 0.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4854) DUF3427 PF11907.8 CQR57852.1 - 0.14 11.4 0.1 0.23 10.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3427) Hamartin PF04388.12 CQR57853.1 - 3.4 6.2 13.1 4 6.0 13.1 1.1 1 0 0 1 1 1 0 Hamartin protein Polysacc_synt_2 PF02719.15 CQR57854.1 - 1.8e-123 411.4 0.0 2.4e-123 411.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 CQR57854.1 - 1.8e-24 86.5 0.0 1.3e-23 83.7 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR57854.1 - 6.8e-15 55.3 0.0 6.1e-14 52.1 0.0 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 CQR57854.1 - 3e-14 52.8 0.0 6.3e-13 48.5 0.0 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain CoA_binding_3 PF13727.6 CQR57854.1 - 1.2e-12 48.2 0.2 2.7e-12 47.1 0.2 1.6 1 0 0 1 1 1 1 CoA-binding domain 3Beta_HSD PF01073.19 CQR57854.1 - 5e-09 35.6 0.0 8.7e-09 34.8 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 CQR57854.1 - 4e-05 23.6 0.0 8.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 KR domain NAD_binding_4 PF07993.12 CQR57854.1 - 0.00012 21.3 0.5 0.0091 15.2 0.1 2.4 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 CQR57854.1 - 0.00025 21.0 0.2 0.00064 19.7 0.2 1.7 1 1 0 1 1 1 1 NAD(P)H-binding PglD_N PF17836.1 CQR57854.1 - 0.0019 18.8 0.0 0.0094 16.6 0.0 2.2 1 0 0 1 1 1 1 PglD N-terminal domain adh_short PF00106.25 CQR57854.1 - 0.0033 16.9 0.0 0.0066 15.9 0.0 1.6 1 1 0 1 1 1 1 short chain dehydrogenase DUF3842 PF12953.7 CQR57854.1 - 0.0051 17.2 0.0 0.028 14.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3842) Peptidase_A24 PF01478.18 CQR57854.1 - 0.031 14.7 1.3 0.057 13.8 1.3 1.4 1 0 0 1 1 1 0 Type IV leader peptidase family Glyco_tran_WecB PF03808.13 CQR57854.1 - 0.037 14.0 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family Shikimate_DH PF01488.20 CQR57854.1 - 0.092 12.8 0.0 8.2 6.5 0.0 2.7 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 CQR57854.1 - 0.13 11.6 0.1 31 3.8 0.0 3.0 3 0 0 3 3 3 0 ThiF family Pyr_redox_2 PF07992.14 CQR57854.1 - 0.15 11.2 0.0 5.2 6.2 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF4199 PF13858.6 CQR57854.1 - 3.3 8.1 10.5 6.3 7.2 10.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) AAA_31 PF13614.6 CQR57855.1 - 2e-15 57.1 0.6 4.7e-15 55.9 0.6 1.6 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 CQR57855.1 - 9.3e-12 44.9 0.9 1.5e-11 44.2 0.9 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 CQR57855.1 - 2.5e-10 40.5 0.0 7e-10 39.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 CQR57855.1 - 2.1e-07 30.5 0.2 3.1e-07 29.9 0.2 1.3 1 0 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 CQR57855.1 - 5.4e-06 26.1 0.0 8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 CQR57855.1 - 0.00013 21.9 0.1 0.29 10.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.22 CQR57855.1 - 0.00036 20.2 0.2 0.0068 16.1 0.2 2.3 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 CQR57855.1 - 0.00085 18.8 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 CQR57855.1 - 0.0027 17.0 0.1 0.3 10.2 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase DUF5130 PF17174.4 CQR57855.1 - 0.023 14.9 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5130) CLP1_P PF16575.5 CQR57855.1 - 0.066 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop KTI12 PF08433.10 CQR57855.1 - 0.14 11.5 0.0 0.37 10.2 0.0 1.6 1 1 1 2 2 2 0 Chromatin associated protein KTI12 Wzz PF02706.15 CQR57856.1 - 2.6e-17 62.9 2.7 2.6e-17 62.9 2.7 2.2 3 0 0 3 3 3 1 Chain length determinant protein GNVR PF13807.6 CQR57856.1 - 0.00035 20.4 0.7 0.00035 20.4 0.7 2.5 2 1 0 2 2 2 1 G-rich domain on putative tyrosine kinase DUF3139 PF11337.8 CQR57856.1 - 0.017 15.7 3.8 0.3 11.7 2.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) TarH PF02203.15 CQR57856.1 - 0.042 13.8 0.0 0.14 12.1 0.0 1.9 1 0 0 1 1 1 0 Tar ligand binding domain homologue Sigma_reg_N PF13800.6 CQR57856.1 - 0.13 12.6 3.9 4.2 7.7 0.1 2.5 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF3094 PF11293.8 CQR57856.1 - 1.1 9.1 2.8 1.5 8.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) 4HB_MCP_1 PF12729.7 CQR57856.1 - 2.2 7.8 11.4 0.014 15.0 2.7 1.9 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction SLH PF00395.20 CQR57857.1 - 5.2e-29 100.0 13.9 1.7e-12 47.1 0.3 3.8 4 0 0 4 4 4 3 S-layer homology domain DNA_photolyase PF00875.18 CQR57858.1 - 0.0059 16.6 0.1 0.014 15.4 0.0 1.7 2 0 0 2 2 2 1 DNA photolyase MMR_HSR1 PF01926.23 CQR57860.1 - 8.2e-24 83.9 0.0 1.2e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR57860.1 - 9.9e-08 31.7 0.0 1.2e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 CQR57860.1 - 4.7e-06 26.6 0.0 8.1e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 CQR57860.1 - 2.6e-05 24.3 0.0 0.19 11.8 0.1 2.9 1 1 1 2 2 2 2 Dynamin family Roc PF08477.13 CQR57860.1 - 0.00041 20.5 0.2 0.0032 17.7 0.2 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 CQR57860.1 - 0.0015 17.9 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.10 CQR57860.1 - 0.0048 16.4 0.0 0.0069 15.8 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 CQR57860.1 - 0.0062 16.1 0.0 0.2 11.2 0.0 2.2 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain RNA_helicase PF00910.22 CQR57860.1 - 0.012 16.0 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Ras PF00071.22 CQR57860.1 - 0.079 12.6 0.0 0.17 11.5 0.0 1.5 2 0 0 2 2 2 0 Ras family TniB PF05621.11 CQR57860.1 - 0.094 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein Lon_C PF05362.13 CQR57861.1 - 8.5e-98 325.9 0.2 1.9e-97 324.8 0.2 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 CQR57861.1 - 6.8e-41 140.4 2.2 6.8e-41 140.4 2.2 2.2 3 0 0 3 3 2 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 CQR57861.1 - 6.5e-24 84.9 0.0 2.1e-23 83.2 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ChlI PF13541.6 CQR57861.1 - 4.7e-10 39.4 0.0 9.6e-10 38.4 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 CQR57861.1 - 1.3e-09 38.2 0.2 7.2e-09 35.8 0.0 2.4 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR57861.1 - 3.5e-06 27.5 0.9 2.7e-05 24.6 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_2 PF07724.14 CQR57861.1 - 3.7e-05 23.9 0.1 0.00026 21.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_PrkA PF08298.11 CQR57861.1 - 4e-05 22.7 0.0 8.2e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_22 PF13401.6 CQR57861.1 - 7e-05 23.1 0.0 0.0014 18.9 0.0 2.9 2 1 0 2 2 1 1 AAA domain AAA_3 PF07726.11 CQR57861.1 - 0.00012 21.9 0.0 0.00029 20.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 CQR57861.1 - 0.00031 20.7 0.0 0.00094 19.1 0.0 1.8 1 0 0 1 1 1 1 RsgA GTPase IstB_IS21 PF01695.17 CQR57861.1 - 0.00054 19.8 0.1 0.0019 18.0 0.0 2.0 2 0 0 2 2 1 1 IstB-like ATP binding protein NB-ARC PF00931.22 CQR57861.1 - 0.0018 17.5 0.6 0.013 14.6 0.0 2.3 2 1 0 2 2 2 1 NB-ARC domain RuvB_N PF05496.12 CQR57861.1 - 0.0027 17.4 0.0 0.008 15.9 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 CQR57861.1 - 0.0029 17.5 0.0 0.033 14.1 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 CQR57861.1 - 0.0035 17.9 3.2 0.0065 17.0 0.0 3.1 3 1 1 4 4 2 1 AAA domain DUF815 PF05673.13 CQR57861.1 - 0.0043 16.3 0.0 0.31 10.2 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) TsaE PF02367.17 CQR57861.1 - 0.0043 17.0 0.0 0.022 14.8 0.0 2.2 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 CQR57861.1 - 0.0044 17.2 0.5 0.0091 16.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 CQR57861.1 - 0.005 16.9 0.0 0.015 15.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 CQR57861.1 - 0.0061 16.9 0.0 0.02 15.3 0.0 2.0 1 0 0 1 1 1 1 RNA helicase PIF1 PF05970.14 CQR57861.1 - 0.009 15.2 1.5 0.27 10.4 0.3 3.0 2 1 1 3 3 3 1 PIF1-like helicase MMR_HSR1 PF01926.23 CQR57861.1 - 0.014 15.5 0.0 0.55 10.3 0.0 2.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 CQR57861.1 - 0.014 15.1 1.5 1.8 8.2 0.0 3.1 3 0 0 3 3 3 0 Cytidylate kinase Sigma54_activat PF00158.26 CQR57861.1 - 0.021 14.5 0.0 0.061 13.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain TIP49 PF06068.13 CQR57861.1 - 0.026 13.7 0.0 0.026 13.7 0.0 2.4 3 0 0 3 3 2 0 TIP49 P-loop domain Zeta_toxin PF06414.12 CQR57861.1 - 0.03 13.6 0.0 0.072 12.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 CQR57861.1 - 0.04 14.2 1.3 0.31 11.4 0.1 2.8 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 CQR57861.1 - 0.059 13.1 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR57861.1 - 0.068 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 CQR57861.1 - 0.08 12.8 2.0 0.094 12.6 0.0 2.2 3 0 0 3 3 1 0 NTPase AAA_30 PF13604.6 CQR57861.1 - 0.091 12.5 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 CQR57861.1 - 0.099 12.7 0.5 2.2 8.4 0.0 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 CQR57861.1 - 0.12 12.9 3.9 0.12 12.9 0.0 2.6 2 1 0 2 2 2 0 ABC transporter Viral_helicase1 PF01443.18 CQR57861.1 - 0.14 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Glyco_trans_1_2 PF13524.6 CQR57861.1 - 0.17 12.3 0.4 3.5 8.1 0.0 2.8 3 0 0 3 3 2 0 Glycosyl transferases group 1 AAA_17 PF13207.6 CQR57861.1 - 0.2 12.1 0.0 0.2 12.1 0.0 3.1 3 0 0 3 3 2 0 AAA domain Spore_III_AB PF09548.10 CQR57861.1 - 0.51 10.4 9.8 0.15 12.1 6.6 1.9 2 0 0 2 2 1 0 Stage III sporulation protein AB (spore_III_AB) DUF1283 PF06932.11 CQR57861.1 - 2.1 8.6 4.3 6.3 7.1 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1283) AAA_23 PF13476.6 CQR57861.1 - 6.7 7.1 0.0 6.7 7.1 0.0 2.9 2 1 0 2 2 1 0 AAA domain Lon_C PF05362.13 CQR57862.1 - 3.4e-32 111.6 1.4 2.1e-31 109.0 0.8 2.4 2 1 1 3 3 3 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 CQR57862.1 - 8.5e-19 68.3 0.0 1.4e-18 67.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 CQR57862.1 - 1.4e-14 53.9 0.0 3.1e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 CQR57862.1 - 8.1e-13 48.4 0.0 6.5e-12 45.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.14 CQR57862.1 - 4.4e-10 39.7 0.0 9.2e-09 35.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 CQR57862.1 - 1.3e-09 37.9 0.0 2.7e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase RuvB_N PF05496.12 CQR57862.1 - 5e-09 36.1 0.1 2.3e-05 24.2 0.0 3.0 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 CQR57862.1 - 1.4e-06 28.8 0.0 2.5e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_32 PF13654.6 CQR57862.1 - 2e-05 23.6 0.0 0.033 13.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.14 CQR57862.1 - 4.6e-05 23.6 0.1 0.00018 21.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_30 PF13604.6 CQR57862.1 - 0.00062 19.5 0.0 0.0018 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR57862.1 - 0.00095 19.5 0.0 0.0024 18.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 CQR57862.1 - 0.0029 17.5 0.0 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea DNA_pol3_delta2 PF13177.6 CQR57862.1 - 0.0037 17.1 0.0 1.3 8.8 0.0 3.1 3 0 0 3 3 3 1 DNA polymerase III, delta subunit AAA_19 PF13245.6 CQR57862.1 - 0.0045 17.3 0.1 0.053 13.9 0.1 2.2 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 CQR57862.1 - 0.014 15.5 0.0 3.2 7.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain NTPase_1 PF03266.15 CQR57862.1 - 0.017 15.0 0.2 0.16 11.9 0.0 2.5 3 0 0 3 3 3 0 NTPase MCM PF00493.23 CQR57862.1 - 0.023 13.8 0.0 0.31 10.1 0.0 2.1 2 0 0 2 2 2 0 MCM P-loop domain NACHT PF05729.12 CQR57862.1 - 0.027 14.4 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 CQR57862.1 - 0.038 14.5 0.0 0.074 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 CQR57862.1 - 0.048 13.2 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region NB-ARC PF00931.22 CQR57862.1 - 0.075 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 CQR57862.1 - 0.16 11.7 0.1 0.52 10.0 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.22 CQR57862.1 - 0.17 12.3 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TrwB_AAD_bind PF10412.9 CQR57862.1 - 0.21 10.5 0.1 0.52 9.2 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain GcpE PF04551.14 CQR57863.1 - 3.6e-139 463.7 0.5 4.1e-139 463.5 0.5 1.0 1 0 0 1 1 1 1 GcpE protein Omp28 PF11551.8 CQR57863.1 - 0.065 13.1 0.2 0.14 12.0 0.2 1.5 1 0 0 1 1 1 0 Outer membrane protein Omp28 AAA_2 PF07724.14 CQR57864.1 - 3.7e-49 167.1 0.0 5.6e-49 166.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) zf-C4_ClpX PF06689.13 CQR57864.1 - 3.9e-20 71.5 4.6 7.2e-20 70.6 4.6 1.5 1 0 0 1 1 1 1 ClpX C4-type zinc finger ClpB_D2-small PF10431.9 CQR57864.1 - 4.8e-16 58.6 1.3 8.3e-16 57.8 0.3 2.0 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 CQR57864.1 - 1.7e-15 57.6 0.1 3.3e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR57864.1 - 2.1e-06 27.8 0.1 2.4e-05 24.3 0.1 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 CQR57864.1 - 3.1e-06 27.0 0.3 9e-06 25.5 0.3 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 CQR57864.1 - 5.4e-06 25.7 0.3 1.2e-05 24.5 0.1 1.6 2 0 0 2 2 2 1 MCM P-loop domain Mg_chelatase PF01078.21 CQR57864.1 - 8.4e-06 25.3 0.8 0.0019 17.6 0.8 3.2 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 CQR57864.1 - 8.8e-06 25.5 0.0 0.0024 17.6 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.6 CQR57864.1 - 0.00027 21.2 0.2 0.0027 18.0 0.2 2.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 CQR57864.1 - 0.00046 19.3 0.0 0.00079 18.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein TIP49 PF06068.13 CQR57864.1 - 0.0018 17.5 0.1 0.0041 16.4 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain Sigma54_activ_2 PF14532.6 CQR57864.1 - 0.0021 18.2 0.0 0.006 16.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 CQR57864.1 - 0.003 17.9 0.1 0.009 16.4 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 CQR57864.1 - 0.0061 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 CQR57864.1 - 0.011 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 CQR57864.1 - 0.012 15.7 0.0 0.028 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 CQR57864.1 - 0.02 14.9 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 CQR57864.1 - 0.029 14.1 0.0 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 CQR57864.1 - 0.03 13.8 0.0 0.07 12.6 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.12 CQR57864.1 - 0.052 13.5 0.1 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 CQR57864.1 - 0.063 13.8 0.0 0.17 12.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DEAD PF00270.29 CQR57864.1 - 0.081 12.7 0.7 0.32 10.7 0.1 2.1 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_29 PF13555.6 CQR57864.1 - 0.091 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 CQR57864.1 - 0.093 12.1 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_8 PF12780.7 CQR57864.1 - 0.12 11.7 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 RNA_helicase PF00910.22 CQR57864.1 - 0.16 12.3 0.0 0.41 11.1 0.0 1.8 1 1 0 1 1 1 0 RNA helicase C1_2 PF03107.16 CQR57864.1 - 0.21 12.0 1.8 0.38 11.1 1.8 1.4 1 0 0 1 1 1 0 C1 domain CLP_protease PF00574.23 CQR57865.1 - 1.2e-86 289.2 0.0 1.4e-86 289.1 0.0 1.0 1 0 0 1 1 1 1 Clp protease Trigger_C PF05698.14 CQR57866.1 - 1.1e-43 149.1 11.1 1.1e-43 149.1 11.1 2.2 2 0 0 2 2 2 1 Bacterial trigger factor protein (TF) C-terminus Trigger_N PF05697.13 CQR57866.1 - 2.1e-41 141.6 3.0 2.1e-41 141.6 3.0 2.9 2 1 1 3 3 3 2 Bacterial trigger factor protein (TF) FKBP_C PF00254.28 CQR57866.1 - 1.2e-14 54.4 0.9 5.4e-14 52.3 0.1 2.5 3 0 0 3 3 3 1 FKBP-type peptidyl-prolyl cis-trans isomerase SurA_N PF09312.11 CQR57866.1 - 0.0033 17.5 3.7 0.02 15.0 0.4 2.7 1 1 1 2 2 2 1 SurA N-terminal domain SurA_N_3 PF13624.6 CQR57866.1 - 0.012 15.4 11.2 0.014 15.2 1.6 2.8 2 1 1 3 3 3 0 SurA N-terminal domain DUF2087 PF09860.9 CQR57866.1 - 0.14 12.4 0.3 6.7 6.9 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2087) DDE_Tnp_1 PF01609.21 CQR57869.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR57869.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR57869.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR57869.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain BPD_transp_1 PF00528.22 CQR57870.1 - 3e-28 98.8 16.2 5.4e-28 98.0 10.5 2.6 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57871.1 - 5.1e-25 88.3 14.9 5.1e-25 88.3 14.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OSTbeta PF15048.6 CQR57871.1 - 0.079 13.1 0.3 0.079 13.1 0.3 2.1 2 0 0 2 2 2 0 Organic solute transporter subunit beta protein PBP_like_2 PF12849.7 CQR57872.1 - 2.2e-29 103.0 12.0 6e-29 101.6 12.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 CQR57872.1 - 2.4e-17 62.7 0.2 3.8e-17 62.0 0.2 1.4 1 0 0 1 1 1 1 PBP superfamily domain PD40 PF07676.12 CQR57873.1 - 1.1e-05 25.2 0.0 0.18 11.8 0.1 3.3 2 0 0 2 2 2 2 WD40-like Beta Propeller Repeat Cu_amine_oxidN1 PF07833.11 CQR57873.1 - 0.00053 20.4 0.4 0.0066 16.9 0.0 2.7 2 1 0 2 2 2 1 Copper amine oxidase N-terminal domain Gmad1 PF10647.9 CQR57873.1 - 0.0049 16.7 6.9 1 9.1 6.9 2.4 1 1 0 1 1 1 1 Lipoprotein LpqB beta-propeller domain DUF5050 PF16472.5 CQR57873.1 - 0.013 14.8 0.2 0.29 10.3 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF5050) SGL PF08450.12 CQR57873.1 - 0.064 12.8 0.5 0.68 9.5 0.0 2.7 2 1 1 3 3 3 0 SMP-30/Gluconolactonase/LRE-like region GreA_GreB PF01272.19 CQR57873.1 - 0.52 10.3 4.0 2.5 8.1 0.3 2.4 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term CelD_N PF02927.14 CQR57873.1 - 0.71 10.8 3.2 1 10.3 1.0 2.5 2 1 0 2 2 2 0 Cellulase N-terminal ig-like domain LPAM_2 PF13627.6 CQR57874.1 - 0.15 11.9 3.4 0.29 11.0 3.4 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site ABC_tran PF00005.27 CQR57875.1 - 7.1e-31 107.5 0.1 9.8e-31 107.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57875.1 - 2.7e-13 50.4 1.0 2.5e-09 37.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR57875.1 - 0.00091 18.7 0.0 0.21 11.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR57875.1 - 0.00096 19.4 0.1 0.003 17.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR57875.1 - 0.0017 18.1 0.2 0.0038 17.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR57875.1 - 0.0019 18.1 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR57875.1 - 0.0041 17.5 0.0 0.0067 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR57875.1 - 0.0087 15.8 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 CQR57875.1 - 0.014 15.5 0.1 0.037 14.1 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain NTPase_1 PF03266.15 CQR57875.1 - 0.016 15.1 1.5 0.28 11.1 0.2 2.8 3 0 0 3 3 3 0 NTPase MeaB PF03308.16 CQR57875.1 - 0.022 13.8 0.3 0.037 13.0 0.3 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PhoH PF02562.16 CQR57875.1 - 0.022 14.2 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Rad17 PF03215.15 CQR57875.1 - 0.023 14.6 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 CQR57875.1 - 0.026 15.0 0.7 0.048 14.2 0.4 1.5 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR57875.1 - 0.044 13.5 0.1 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 CQR57875.1 - 0.048 13.7 0.2 0.61 10.2 0.1 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 CQR57875.1 - 0.055 14.0 0.6 0.099 13.2 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR57875.1 - 0.059 13.1 0.6 0.33 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 CQR57875.1 - 0.068 12.9 0.5 0.16 11.8 0.1 1.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 CQR57875.1 - 0.08 12.9 1.1 0.31 10.9 0.3 2.1 1 1 1 2 2 2 0 NACHT domain AAA PF00004.29 CQR57875.1 - 0.081 13.4 0.2 0.18 12.2 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 CQR57875.1 - 0.1 11.8 0.7 0.48 9.6 0.7 2.1 1 1 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 CQR57875.1 - 0.13 12.4 0.4 0.19 11.9 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 CQR57875.1 - 0.13 12.2 0.1 0.42 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 CQR57875.1 - 0.13 11.9 0.0 4.1 7.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.19 CQR57875.1 - 0.14 11.7 1.1 0.21 11.2 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 CQR57875.1 - 0.36 9.9 2.0 2.1 7.4 1.4 2.2 1 1 1 2 2 2 0 Type II/IV secretion system protein ABC2_membrane_3 PF12698.7 CQR57876.1 - 8.5e-36 123.8 17.1 1e-35 123.5 17.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR57876.1 - 2.2e-29 102.4 18.4 2.2e-29 102.4 18.4 2.5 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR57876.1 - 2.9e-11 43.2 14.3 4.8e-11 42.5 14.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR57876.1 - 0.0047 16.9 12.3 0.0047 16.9 12.3 2.5 3 1 0 3 3 3 1 ABC-2 family transporter protein TetR_N PF00440.23 CQR57878.1 - 1.5e-16 59.9 0.9 1.1e-15 57.2 1.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_7 PF14246.6 CQR57878.1 - 0.0026 17.8 0.0 0.0042 17.1 0.0 1.4 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_11 PF16859.5 CQR57878.1 - 0.003 17.8 0.0 0.0062 16.8 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 CQR57878.1 - 0.16 12.2 0.0 0.66 10.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Cadherin-like PF12733.7 CQR57879.1 - 2.3e-45 153.0 32.6 1.4e-16 60.8 0.5 7.1 8 0 0 8 8 8 4 Cadherin-like beta sandwich domain SLH PF00395.20 CQR57879.1 - 7.9e-36 121.8 0.1 1.5e-14 53.7 0.0 3.9 3 0 0 3 3 3 3 S-layer homology domain fn3 PF00041.21 CQR57879.1 - 6.4e-30 103.3 17.6 1.2e-09 38.4 0.1 6.4 6 0 0 6 6 6 4 Fibronectin type III domain CBM_X2 PF03442.14 CQR57879.1 - 6.5e-15 55.0 0.9 4.1e-14 52.4 0.1 2.9 2 0 0 2 2 2 1 Carbohydrate binding domain X2 Pur_ac_phosph_N PF16656.5 CQR57879.1 - 0.00013 22.5 30.8 0.094 13.3 0.4 6.1 5 1 1 6 6 6 4 Purple acid Phosphatase, N-terminal domain DUF4992 PF16383.5 CQR57879.1 - 0.022 14.3 14.4 4.2 6.9 0.1 4.9 3 1 2 5 5 5 0 Domain of unknown function Calycin_like PF13944.6 CQR57879.1 - 8.6 6.7 11.9 16 5.8 0.3 4.8 4 1 1 5 5 5 0 Calycin-like beta-barrel domain SNF2_assoc PF08455.10 CQR57880.1 - 1.4e-88 297.5 0.0 2.3e-88 296.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial SNF2 helicase associated SNF2_N PF00176.23 CQR57880.1 - 7.3e-51 172.9 0.0 1.3e-50 172.1 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 CQR57880.1 - 2.5e-19 69.7 0.0 6.3e-19 68.4 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR57880.1 - 2e-07 31.1 0.0 5.3e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SWIM PF04434.17 CQR57880.1 - 9.8e-06 25.1 0.1 2e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger MttA_Hcf106 PF02416.16 CQR57883.1 - 0.08 12.3 0.3 0.09 12.1 0.3 1.1 1 0 0 1 1 1 0 mttA/Hcf106 family MGC-24 PF05283.11 CQR57883.1 - 0.23 11.9 0.3 0.24 11.9 0.3 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DALR_1 PF05746.15 CQR57884.1 - 2.2e-22 79.5 0.0 7.5e-22 77.7 0.0 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 CQR57884.1 - 5.6e-20 71.7 0.0 1.2e-18 67.4 0.1 2.4 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1d PF00750.19 CQR57884.1 - 1.3e-19 70.4 0.2 2.6e-15 56.3 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1g PF09334.11 CQR57884.1 - 0.009 14.8 0.1 0.016 13.9 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 CQR57884.1 - 0.057 11.7 0.0 0.084 11.1 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 CQR57884.1 - 0.14 11.5 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain RVT_1 PF00078.27 CQR57885.1 - 9.9e-42 142.9 0.2 1.9e-41 142.0 0.2 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 CQR57885.1 - 0.0094 16.2 0.1 0.0094 16.2 0.1 2.2 2 0 0 2 2 2 1 N-terminal domain of reverse transcriptase Met_10 PF02475.16 CQR57885.1 - 0.023 14.4 0.2 4.8 6.9 0.0 3.0 2 1 1 3 3 3 0 Met-10+ like-protein TssD PF17642.1 CQR57885.1 - 0.032 14.0 0.0 0.082 12.7 0.0 1.6 1 0 0 1 1 1 0 Hemolysin coregulated protein Hcp (TssD) DUF1280 PF06918.14 CQR57885.1 - 0.2 11.2 3.5 0.089 12.4 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1280) Asn_synthase PF00733.21 CQR57887.1 - 3.4e-91 306.6 0.0 4.5e-91 306.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 CQR57887.1 - 4.6e-46 155.7 0.0 7.6e-46 155.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 CQR57887.1 - 2.3e-39 134.6 0.0 4.3e-39 133.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 CQR57887.1 - 0.00027 20.5 0.0 0.00061 19.3 0.0 1.5 1 0 0 1 1 1 1 Aluminium induced protein Aldo_ket_red PF00248.21 CQR57888.1 - 7e-52 176.4 0.0 7.6e-50 169.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Sigma70_r2 PF04542.14 CQR57889.1 - 3.4e-17 62.0 0.1 7.5e-17 60.9 0.1 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR57889.1 - 2.7e-11 43.0 0.5 5e-11 42.1 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR57889.1 - 0.045 13.3 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 TctB PF07331.11 CQR57890.1 - 0.024 14.9 0.1 0.026 14.8 0.1 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Baculo_11_kDa PF06143.11 CQR57890.1 - 0.047 13.3 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family TMEM208_SND2 PF05620.11 CQR57890.1 - 0.06 13.1 0.0 0.068 13.0 0.0 1.1 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 FA_desaturase PF00487.24 CQR57890.1 - 0.17 11.7 0.0 0.19 11.6 0.0 1.0 1 0 0 1 1 1 0 Fatty acid desaturase ABC_tran PF00005.27 CQR57891.1 - 2e-29 102.9 0.0 2.9e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57891.1 - 2e-12 47.5 0.5 6.9e-07 29.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR57891.1 - 7.1e-09 35.8 0.0 0.0017 18.1 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 CQR57891.1 - 8.8e-06 25.6 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR57891.1 - 1.8e-05 25.3 0.0 3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR57891.1 - 3.6e-05 23.3 0.1 0.23 10.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain KdpD PF02702.17 CQR57891.1 - 0.0009 18.8 0.2 0.57 9.6 0.1 2.2 1 1 1 2 2 2 2 Osmosensitive K+ channel His kinase sensor domain AAA_16 PF13191.6 CQR57891.1 - 0.0034 17.8 0.0 0.0083 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 CQR57891.1 - 0.005 16.8 0.2 0.011 15.7 0.1 1.6 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.6 CQR57891.1 - 0.0058 16.9 0.0 0.011 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR57891.1 - 0.0088 15.8 0.1 0.015 15.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 CQR57891.1 - 0.011 14.4 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 CQR57891.1 - 0.029 14.0 0.2 0.054 13.1 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.14 CQR57891.1 - 0.034 14.1 0.3 0.057 13.3 0.3 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 CQR57891.1 - 0.038 13.9 0.7 0.072 13.0 0.2 1.6 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 CQR57891.1 - 0.043 14.0 0.0 0.14 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR57891.1 - 0.091 12.7 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 CQR57891.1 - 0.14 12.2 0.1 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 CQR57891.1 - 0.14 11.1 0.1 0.21 10.5 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF87 PF01935.17 CQR57891.1 - 0.16 12.0 0.2 0.27 11.3 0.2 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 CQR57891.1 - 0.19 12.2 0.4 0.67 10.4 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 CQR57891.1 - 0.19 11.0 0.2 0.36 10.1 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin ABC2_membrane_3 PF12698.7 CQR57892.1 - 9.8e-11 41.3 13.4 2.3e-10 40.1 13.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR57893.1 - 0.068 12.6 13.0 0.11 11.9 13.0 1.4 1 0 0 1 1 1 0 ABC-2 type transporter 7TMR-DISM_7TM PF07695.11 CQR57893.1 - 2.1 8.2 19.3 7.1 6.5 3.7 2.4 1 1 1 2 2 2 0 7TM diverse intracellular signalling TssN PF17555.2 CQR57893.1 - 5.4 6.3 10.7 1.7 8.0 6.0 2.0 1 1 1 2 2 2 0 Type VI secretion system, TssN Cupin_5 PF06172.11 CQR57894.1 - 1.3e-42 145.3 0.0 1.5e-42 145.1 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily (DUF985) Band_7 PF01145.25 CQR57895.1 - 5.6e-30 104.7 3.7 5.6e-30 104.7 3.7 2.0 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 CQR57895.1 - 0.0092 15.7 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.18 CQR57896.1 - 2.1e-14 53.7 1.5 2.1e-14 53.7 1.5 1.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding FAD_oxidored PF12831.7 CQR57897.1 - 3.4e-111 372.7 0.0 4e-111 372.4 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR57897.1 - 2.8e-07 30.0 2.6 5.2e-07 29.1 2.6 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 CQR57897.1 - 7.2e-07 28.7 0.0 2.6e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR57897.1 - 1.4e-06 28.4 1.0 3.8e-06 27.0 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 CQR57897.1 - 2.8e-06 26.7 1.5 4e-06 26.2 1.5 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 CQR57897.1 - 0.0014 19.2 1.4 0.14 12.7 0.3 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR57897.1 - 0.0033 16.7 0.0 0.0065 15.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 CQR57897.1 - 0.0037 16.0 1.1 0.0069 15.1 1.1 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 CQR57897.1 - 0.0085 15.4 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 CQR57897.1 - 0.025 13.9 0.3 0.039 13.3 0.3 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 CQR57897.1 - 0.05 13.2 6.0 0.02 14.5 3.6 1.8 2 1 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 CQR57897.1 - 0.13 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ROK PF00480.20 CQR57898.1 - 6e-58 196.7 1.4 6.8e-58 196.5 1.4 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 CQR57898.1 - 0.00039 20.0 1.1 0.018 14.6 0.2 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 CQR57898.1 - 0.003 17.1 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain HTH_6 PF01418.17 CQR57899.1 - 1.5e-23 82.6 0.0 3.1e-23 81.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family SIS PF01380.22 CQR57899.1 - 7.5e-19 67.9 0.7 1.1e-18 67.3 0.7 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 CQR57899.1 - 5.4e-07 29.7 2.0 4e-05 23.6 0.3 2.3 1 1 1 2 2 2 2 SIS domain HTH_17 PF12728.7 CQR57899.1 - 0.012 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain IFRD PF05004.13 CQR57899.1 - 0.059 12.5 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Interferon-related developmental regulator (IFRD) NanE PF04131.14 CQR57900.1 - 2e-63 213.0 0.5 2.4e-63 212.8 0.5 1.0 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 CQR57900.1 - 3.9e-06 26.5 2.1 1.3e-05 24.8 0.1 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 CQR57900.1 - 1.6e-05 24.5 0.0 0.0002 20.9 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 CQR57900.1 - 0.00081 18.5 0.7 0.17 10.9 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 CQR57900.1 - 0.0055 16.0 0.2 0.0055 16.0 0.2 2.0 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 CQR57900.1 - 0.027 13.8 0.6 0.35 10.2 0.0 2.5 2 1 0 3 3 3 0 Thiamine monophosphate synthase DUF4127 PF13552.6 CQR57901.1 - 2.4e-162 541.0 0.0 2.7e-162 540.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4127) BPD_transp_1 PF00528.22 CQR57902.1 - 6.4e-16 58.6 15.3 6.4e-16 58.6 15.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR57903.1 - 4.8e-15 55.8 17.0 4.8e-15 55.8 17.0 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR57904.1 - 2.3e-39 136.2 5.8 3.1e-39 135.8 5.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR57904.1 - 4.5e-38 131.7 7.1 5e-38 131.5 6.5 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR57904.1 - 6.7e-05 22.7 0.3 0.26 11.0 0.0 2.6 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR57904.1 - 0.021 14.2 0.2 2.9 7.3 0.1 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein LPAM_2 PF13627.6 CQR57904.1 - 6.3 6.8 5.5 12 5.9 5.5 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Glyco_hydro_18 PF00704.28 CQR57905.1 - 1.5e-92 310.7 4.2 2.1e-92 310.2 4.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 ChiC PF06483.11 CQR57905.1 - 1.4e-10 41.4 3.4 4e-10 39.9 0.6 2.9 2 1 0 2 2 2 1 Chitinase C CBM_5_12 PF02839.14 CQR57905.1 - 2.2e-06 27.9 1.0 2.2e-06 27.9 1.0 4.6 3 0 0 3 3 3 1 Carbohydrate binding domain CBM_2 PF00553.19 CQR57905.1 - 0.00083 19.6 0.4 0.00083 19.6 0.4 3.1 4 0 0 4 4 4 1 Cellulose binding domain CBM_5_12_2 PF14600.6 CQR57905.1 - 0.002 18.0 4.4 0.03 14.3 1.5 3.4 2 0 0 2 2 2 1 Cellulose-binding domain Glyco_hydro_18 PF00704.28 CQR57906.1 - 3.2e-99 332.6 10.0 4.4e-99 332.1 10.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.14 CQR57906.1 - 5.1e-06 26.8 1.7 5.1e-06 26.8 1.7 5.8 6 0 0 6 6 6 2 Carbohydrate binding domain CBM_5_12_2 PF14600.6 CQR57906.1 - 0.0032 17.3 5.6 0.06 13.3 1.8 2.8 2 0 0 2 2 2 2 Cellulose-binding domain Ham1p_like PF01725.16 CQR57907.1 - 1.4e-60 204.4 0.0 1.7e-60 204.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RNase_PH PF01138.21 CQR57908.1 - 3.9e-24 85.6 0.1 7.9e-24 84.6 0.1 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 CQR57908.1 - 3e-12 46.4 0.1 7.9e-12 45.0 0.1 1.8 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Germane PF10646.9 CQR57909.1 - 4e-32 111.1 1.3 1.8e-16 60.8 0.0 2.2 2 0 0 2 2 2 2 Sporulation and spore germination Xol-1_GHMP-like PF09109.10 CQR57909.1 - 0.18 11.7 0.1 0.28 11.0 0.1 1.2 1 0 0 1 1 1 0 Switch protein XOL-1, GHMP-like PgpA PF04608.13 CQR57910.1 - 6.3e-19 68.4 0.0 7.7e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Swi3 PF07962.12 CQR57910.1 - 0.095 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Replication Fork Protection Component Swi3 BTG PF07742.12 CQR57911.1 - 0.051 13.4 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 BTG family Transposase_mut PF00872.18 CQR57913.1 - 1.8e-102 343.1 0.1 2.3e-102 342.7 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 CQR57913.1 - 1.4e-05 25.4 0.0 4.1e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 CQR57913.1 - 2.9e-05 24.3 0.0 0.026 14.8 0.1 2.4 1 1 0 2 2 2 2 DDE domain Latarcin PF10279.9 CQR57913.1 - 0.033 14.6 0.0 0.12 12.7 0.0 2.1 1 1 0 1 1 1 0 Latarcin precursor Lactamase_B PF00753.27 CQR57915.1 - 3.2e-28 99.1 0.1 4.8e-28 98.5 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR57915.1 - 0.017 14.6 0.0 0.042 13.4 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 CQR57915.1 - 0.095 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Methyltransf_25 PF13649.6 CQR57916.1 - 1.6e-20 73.6 0.1 6.1e-20 71.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR57916.1 - 7.1e-18 65.1 0.2 1.5e-17 64.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57916.1 - 2.1e-13 50.4 0.0 3e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR57916.1 - 4.7e-13 49.2 0.0 5.4e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR57916.1 - 5.4e-11 42.3 0.0 1.3e-10 41.1 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 CQR57916.1 - 5.2e-08 33.5 0.0 8.4e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 CQR57916.1 - 9.1e-07 28.5 0.0 1.3e-06 28.0 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 CQR57916.1 - 9.9e-06 25.3 0.0 1.4e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 CQR57916.1 - 3.6e-05 23.5 0.0 5.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 CQR57916.1 - 0.0007 19.0 0.0 0.00085 18.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 CQR57916.1 - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain SAM_MT PF04445.13 CQR57916.1 - 0.0014 18.1 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase PCMT PF01135.19 CQR57916.1 - 0.015 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 CQR57916.1 - 0.027 13.9 0.0 0.081 12.4 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase FtsJ PF01728.19 CQR57916.1 - 0.051 13.7 0.0 0.12 12.5 0.0 1.5 2 0 0 2 2 2 0 FtsJ-like methyltransferase tRNA_U5-meth_tr PF05958.11 CQR57916.1 - 0.075 12.0 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_8 PF05148.15 CQR57916.1 - 0.078 12.8 0.0 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_15 PF09445.10 CQR57916.1 - 0.14 11.7 0.0 0.17 11.5 0.0 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 CQR57916.1 - 0.17 11.8 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Alpha-amylase PF00128.24 CQR57917.1 - 1.9e-117 392.6 0.6 2.8e-117 392.0 0.6 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 CQR57917.1 - 6.4e-12 45.4 0.1 1.4e-11 44.4 0.1 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 CQR57917.1 - 1.8e-05 24.1 0.0 2.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain Y1_Tnp PF01797.16 CQR57918.1 - 5.9e-38 129.7 1.4 7.2e-38 129.4 1.4 1.1 1 0 0 1 1 1 1 Transposase IS200 like HMGL-like PF00682.19 CQR57919.1 - 1.7e-67 227.8 0.1 2e-67 227.5 0.1 1.1 1 0 0 1 1 1 1 HMGL-like ThiF PF00899.21 CQR57920.1 - 2.9e-48 164.4 0.0 3.4e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family DUF269 PF03270.13 CQR57921.1 - 7.8e-28 97.0 0.0 1e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF269 Nitro_FeMo-Co PF02579.17 CQR57922.1 - 3.4e-17 62.6 0.0 4.4e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Oxidored_nitro PF00148.19 CQR57923.1 - 1.1e-76 258.1 0.0 1.3e-76 257.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 CQR57924.1 - 5.9e-103 344.7 0.0 6.7e-103 344.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Radical_SAM PF04055.21 CQR57924.1 - 0.034 14.5 0.0 0.077 13.4 0.0 1.6 1 0 0 1 1 1 0 Radical SAM superfamily Oxidored_nitro PF00148.19 CQR57925.1 - 7.2e-114 380.6 0.0 8.7e-114 380.3 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF3364 PF11844.8 CQR57925.1 - 1.5e-12 47.6 0.7 2.3e-12 47.0 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3364) Oxidored_nitro PF00148.19 CQR57926.1 - 3.4e-110 368.5 0.0 4e-110 368.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 CQR57927.1 - 2.8e-129 430.3 0.9 3.2e-129 430.1 0.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 CQR57927.1 - 5e-08 33.1 0.0 8.8e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 CQR57927.1 - 2.5e-07 30.8 2.3 4.3e-07 30.0 0.2 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 CQR57927.1 - 8.3e-07 28.5 0.3 3.7e-06 26.3 0.0 2.1 2 1 0 3 3 3 1 Anion-transporting ATPase ParA PF10609.9 CQR57927.1 - 0.0014 18.1 0.2 0.017 14.6 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase RNA_helicase PF00910.22 CQR57927.1 - 0.06 13.7 0.2 0.29 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 CQR57927.1 - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 CQR57927.1 - 0.14 11.3 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Radical_SAM PF04055.21 CQR57928.1 - 1.3e-31 110.2 0.0 5.2e-31 108.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Nitro_FeMo-Co PF02579.17 CQR57928.1 - 2.2e-18 66.4 0.0 4.6e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Fer4_14 PF13394.6 CQR57928.1 - 1.6e-05 25.0 0.0 6.7e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 CQR57928.1 - 0.034 14.4 0.0 0.088 13.1 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain TerC PF03741.16 CQR57929.1 - 3.3e-50 170.3 9.6 4e-50 170.0 8.8 1.4 2 0 0 2 2 2 1 Integral membrane protein TerC family MFS_1 PF07690.16 CQR57929.1 - 7.6e-05 21.8 20.2 0.00055 19.0 21.1 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily UPF0154 PF03672.13 CQR57929.1 - 0.29 11.2 1.8 21 5.2 0.0 3.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) SLH PF00395.20 CQR57930.1 - 2e-17 62.9 0.1 6.9e-08 32.4 0.0 4.2 3 0 0 3 3 3 3 S-layer homology domain FTP PF07504.13 CQR57930.1 - 0.00015 21.6 0.2 0.012 15.4 0.0 2.5 2 0 0 2 2 2 2 Fungalysin/Thermolysin Propeptide Motif PepSY PF03413.19 CQR57930.1 - 0.0014 19.1 8.2 1.3 9.6 0.0 6.0 6 1 0 6 6 6 2 Peptidase propeptide and YPEB domain BPD_transp_1 PF00528.22 CQR57932.1 - 2.3e-21 76.4 14.9 2.3e-21 76.4 14.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR57933.1 - 6.3e-30 104.5 0.0 1e-29 103.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR57933.1 - 8.5e-08 31.9 0.0 0.0039 16.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR57933.1 - 1.4e-07 31.6 0.7 0.00031 20.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR57933.1 - 2e-06 27.4 0.1 5.5e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR57933.1 - 4.4e-05 24.1 0.1 7.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR57933.1 - 6.3e-05 23.3 0.0 0.00012 22.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR57933.1 - 0.00035 19.5 0.3 0.064 12.0 0.1 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR57933.1 - 0.0016 18.8 0.2 0.0027 18.1 0.2 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 CQR57933.1 - 0.0021 17.8 0.0 0.0041 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR57933.1 - 0.0054 16.6 0.1 0.0086 16.0 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 CQR57933.1 - 0.0089 15.1 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_27 PF13514.6 CQR57933.1 - 0.01 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR57933.1 - 0.014 15.6 0.0 0.04 14.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 CQR57933.1 - 0.014 15.8 0.2 0.12 12.8 0.1 2.3 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR57933.1 - 0.016 15.2 0.1 0.37 10.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 CQR57933.1 - 0.017 14.5 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 CQR57933.1 - 0.021 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 CQR57933.1 - 0.043 14.3 0.0 0.078 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR57933.1 - 0.047 13.9 0.6 0.25 11.6 0.6 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 CQR57933.1 - 0.051 13.5 0.3 0.2 11.6 0.0 2.0 3 0 0 3 3 3 0 NACHT domain AAA_28 PF13521.6 CQR57933.1 - 0.093 13.0 0.3 0.32 11.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR57933.1 - 0.12 11.9 0.1 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 CQR57933.1 - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase MMR_HSR1 PF01926.23 CQR57933.1 - 0.2 11.8 0.1 0.58 10.3 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 CQR57933.1 - 0.21 11.2 0.6 0.9 9.1 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NMT1 PF09084.11 CQR57934.1 - 1.6e-15 57.7 4.4 1.3e-12 48.1 3.5 3.0 1 1 1 2 2 2 2 NMT1/THI5 like NMT1_2 PF13379.6 CQR57934.1 - 5.9e-14 52.4 0.6 9.7e-13 48.4 0.6 2.1 1 1 0 1 1 1 1 NMT1-like family Lipoprotein_9 PF03180.14 CQR57934.1 - 5.1e-08 32.3 1.4 1.8e-07 30.5 1.4 1.9 1 1 0 1 1 1 1 NLPA lipoprotein SBP_bac_3 PF00497.20 CQR57934.1 - 5.7e-08 32.5 1.3 1.8e-06 27.6 1.3 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 CQR57934.1 - 2.1e-07 30.8 0.6 3.1e-07 30.2 0.6 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 CQR57934.1 - 0.0017 17.8 0.1 0.0029 17.1 0.1 1.3 1 0 0 1 1 1 1 NMT1-like family CopG_antitoxin PF12441.8 CQR57934.1 - 0.073 13.6 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system Nitroreductase PF00881.24 CQR57935.1 - 5.2e-10 39.6 0.0 0.00014 22.0 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family Nitroreductase PF00881.24 CQR57936.1 - 8.1e-16 58.5 0.0 9.6e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR57936.1 - 0.0013 18.3 0.0 0.037 13.6 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase MarR PF01047.22 CQR57937.1 - 2.9e-11 43.1 0.0 5.1e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR57937.1 - 6.6e-07 29.7 0.0 9.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 CQR57937.1 - 8e-05 22.4 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 CQR57937.1 - 0.036 14.0 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1495 PF07381.11 CQR57937.1 - 0.039 13.8 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) RNA_pol_Rpc34 PF05158.12 CQR57937.1 - 0.048 13.0 0.0 0.059 12.7 0.0 1.3 1 1 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_45 PF14947.6 CQR57937.1 - 0.058 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.19 CQR57937.1 - 0.072 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 CQR57937.1 - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit RQC PF09382.10 CQR57937.1 - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 RQC domain TrmB PF01978.19 CQR57937.1 - 0.14 12.1 0.0 0.43 10.5 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 CQR57938.1 - 1.1e-20 73.3 0.4 1.7e-20 72.8 0.4 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR57938.1 - 0.02 15.1 0.0 0.038 14.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Pentapeptide PF00805.22 CQR57939.1 - 1.7e-28 97.8 21.0 5.9e-08 32.2 2.2 5.9 1 1 3 5 5 5 5 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 CQR57939.1 - 6.3e-27 93.6 10.6 1.5e-10 41.1 1.0 3.5 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 CQR57939.1 - 1.2e-21 76.6 19.7 1e-06 28.8 4.0 5.3 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) CfAFP PF05264.11 CQR57939.1 - 0.00036 20.5 0.2 0.053 13.5 0.0 2.5 2 1 1 3 3 3 2 Choristoneura fumiferana antifreeze protein (CfAFP) DUF4738 PF15889.5 CQR57939.1 - 0.11 12.3 0.4 3.6 7.4 0.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4738) DUF1657 PF07870.11 CQR57939.1 - 0.15 11.9 0.1 0.47 10.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1657) ABC_tran PF00005.27 CQR57940.1 - 5.5e-30 104.7 0.0 1e-29 103.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57940.1 - 9e-14 52.0 0.9 1.2e-08 35.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR57940.1 - 2.4e-05 24.2 0.0 0.0051 16.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR57940.1 - 0.00022 20.9 0.2 0.00045 19.9 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR57940.1 - 0.00097 19.7 0.0 0.0016 19.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain KdpD PF02702.17 CQR57940.1 - 0.0012 18.3 0.0 0.0024 17.4 0.0 1.5 1 1 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_22 PF13401.6 CQR57940.1 - 0.0014 18.9 0.1 0.0088 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR57940.1 - 0.019 15.4 0.1 0.025 14.9 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 CQR57940.1 - 0.028 14.9 0.0 0.1 13.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 CQR57940.1 - 0.037 13.8 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal Rad17 PF03215.15 CQR57940.1 - 0.039 13.9 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 CQR57940.1 - 0.047 13.3 0.1 0.07 12.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 CQR57940.1 - 0.058 13.3 0.4 0.11 12.4 0.4 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 CQR57940.1 - 0.059 13.9 0.0 0.16 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 CQR57940.1 - 0.11 11.8 0.1 0.34 10.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 CQR57940.1 - 0.11 12.5 0.0 0.26 11.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TsaE PF02367.17 CQR57940.1 - 0.12 12.4 0.4 0.26 11.3 0.1 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 CQR57940.1 - 0.13 12.1 0.3 0.39 10.6 0.2 1.8 1 1 0 1 1 1 0 NTPase AAA_30 PF13604.6 CQR57940.1 - 0.14 11.9 0.9 0.37 10.5 0.2 2.0 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.19 CQR57940.1 - 0.17 11.3 0.0 1.2 8.5 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 CQR57940.1 - 0.25 9.9 0.0 0.48 9.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 CQR57941.1 - 6.5e-23 81.3 18.1 9.4e-23 80.7 18.1 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR57941.1 - 4.2e-17 62.3 17.1 4.2e-17 62.3 17.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR57941.1 - 0.0048 16.2 23.0 0.071 12.4 23.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein Pox_A8 PF04745.12 CQR57941.1 - 0.11 11.6 0.7 6.5 5.7 0.3 2.1 2 0 0 2 2 2 0 VITF-3 subunit protein DUF3767 PF12597.8 CQR57941.1 - 0.26 11.1 0.8 7.7 6.4 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3767) ABC2_membrane_4 PF12730.7 CQR57941.1 - 2.4 8.1 14.4 1.7 8.5 11.8 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 CQR57941.1 - 2.5 6.3 16.7 2.8 6.1 16.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1980 PF09323.10 CQR57941.1 - 2.9 7.8 7.5 1.9 8.4 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) Spore_GerAC PF05504.11 CQR57942.1 - 1.3e-25 90.6 0.4 4.3e-25 88.8 0.4 1.8 2 0 0 2 2 2 1 Spore germination B3/ GerAC like, C-terminal GatB_Yqey PF02637.18 CQR57942.1 - 0.081 12.8 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 GatB domain TarS_C1 PF18674.1 CQR57942.1 - 0.12 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 TarS beta-glycosyltransferase C-terminal domain 1 NEMO PF11577.8 CQR57942.1 - 0.12 12.4 0.4 2.2 8.3 0.1 2.5 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO GnsAB_toxin PF08178.11 CQR57942.1 - 0.14 12.1 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system Spore_permease PF03845.13 CQR57943.1 - 1.6e-37 129.1 33.7 2e-37 128.8 33.7 1.1 1 0 0 1 1 1 1 Spore germination protein Phage_holin_5_2 PF16079.5 CQR57943.1 - 1.3 9.4 8.6 0.28 11.6 0.9 3.0 2 1 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V SKG6 PF08693.10 CQR57943.1 - 1.3 8.4 7.0 0.22 11.0 1.1 2.8 2 0 0 2 2 2 0 Transmembrane alpha-helix domain GerA PF03323.13 CQR57944.1 - 9.3e-164 545.3 6.9 1.1e-163 545.1 6.9 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein COG2 PF06148.11 CQR57945.1 - 7.1e-06 26.2 2.0 3.6e-05 23.9 2.0 2.0 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.11 CQR57945.1 - 1.7e-05 23.9 1.0 2.1e-05 23.6 1.0 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.12 CQR57945.1 - 4e-05 23.6 4.6 0.0009 19.3 1.8 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Phage_HK97_TLTM PF06120.11 CQR57945.1 - 6.9e-05 22.2 3.2 7.8e-05 22.0 3.2 1.0 1 0 0 1 1 1 1 Tail length tape measure protein UPF0242 PF06785.11 CQR57945.1 - 7.5e-05 22.9 0.3 9.1e-05 22.7 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus TACC_C PF05010.14 CQR57945.1 - 8.7e-05 22.4 0.1 0.0001 22.2 0.1 1.2 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal WEMBL PF05701.11 CQR57945.1 - 0.00012 21.0 2.3 0.00014 20.7 2.3 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light VASP_tetra PF08776.11 CQR57945.1 - 0.00013 21.5 8.6 0.096 12.3 0.3 3.3 1 1 1 2 2 2 2 VASP tetramerisation domain DUF3450 PF11932.8 CQR57945.1 - 0.00021 20.7 1.3 0.00023 20.6 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) MscS_porin PF12795.7 CQR57945.1 - 0.00022 20.8 0.8 0.00027 20.6 0.8 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF4618 PF15397.6 CQR57945.1 - 0.00026 20.5 1.0 0.00036 20.1 1.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) CENP-F_leu_zip PF10473.9 CQR57945.1 - 0.00027 21.0 4.5 0.00066 19.7 4.2 1.7 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LPP PF04728.13 CQR57945.1 - 0.00037 20.8 0.3 0.047 14.1 0.0 2.6 1 1 2 3 3 3 3 Lipoprotein leucine-zipper TPR_MLP1_2 PF07926.12 CQR57945.1 - 0.00039 20.5 1.3 0.0036 17.4 0.4 2.5 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 CQR57945.1 - 0.00042 20.1 0.4 0.0016 18.2 0.3 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) Filament PF00038.21 CQR57945.1 - 0.00045 19.9 2.3 0.00059 19.5 2.3 1.3 1 0 0 1 1 1 1 Intermediate filament protein COG6 PF06419.11 CQR57945.1 - 0.00046 18.5 1.2 0.00056 18.3 1.2 1.1 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 V-SNARE PF05008.15 CQR57945.1 - 0.0005 20.4 0.8 0.001 19.4 0.4 1.7 1 1 1 2 2 1 1 Vesicle transport v-SNARE protein N-terminus DUF812 PF05667.11 CQR57945.1 - 0.00055 19.0 4.0 0.00098 18.1 3.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF812) NPV_P10 PF05531.12 CQR57945.1 - 0.00057 20.3 3.3 0.02 15.3 0.4 2.3 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein DUF724 PF05266.14 CQR57945.1 - 0.00068 19.5 0.7 0.00079 19.3 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF724) TMPIT PF07851.13 CQR57945.1 - 0.00069 19.0 0.3 0.00083 18.7 0.3 1.0 1 0 0 1 1 1 1 TMPIT-like protein TMF_TATA_bd PF12325.8 CQR57945.1 - 0.00091 19.4 2.5 0.0012 19.0 2.5 1.3 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding DUF2730 PF10805.8 CQR57945.1 - 0.00098 19.2 1.7 0.0071 16.4 0.7 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) TolA_bind_tri PF16331.5 CQR57945.1 - 0.00099 19.1 1.1 0.27 11.3 0.0 3.0 1 1 3 4 4 4 1 TolA binding protein trimerisation Seryl_tRNA_N PF02403.22 CQR57945.1 - 0.001 19.3 1.4 0.0021 18.2 1.4 1.6 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.11 CQR57945.1 - 0.0011 19.4 8.8 0.015 15.7 5.2 3.0 1 1 2 3 3 3 2 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.12 CQR57945.1 - 0.0012 18.8 1.3 0.012 15.6 0.8 2.0 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus CALCOCO1 PF07888.11 CQR57945.1 - 0.0015 17.5 3.3 0.0019 17.2 3.3 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like YabA PF06156.13 CQR57945.1 - 0.0015 19.1 1.5 0.0027 18.3 1.6 1.5 1 1 0 1 1 1 1 Initiation control protein YabA SKA2 PF16740.5 CQR57945.1 - 0.0018 18.1 0.8 0.11 12.3 0.5 2.3 1 1 1 2 2 2 1 Spindle and kinetochore-associated protein 2 Fez1 PF06818.15 CQR57945.1 - 0.0018 18.7 1.5 0.0027 18.2 1.5 1.4 1 1 0 1 1 1 1 Fez1 HMMR_N PF15905.5 CQR57945.1 - 0.0019 17.8 0.5 0.0021 17.6 0.5 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF2203 PF09969.9 CQR57945.1 - 0.0022 18.7 2.3 0.021 15.6 0.6 2.0 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2203) Laminin_II PF06009.12 CQR57945.1 - 0.0022 18.0 2.2 0.019 15.0 2.2 2.3 1 1 0 1 1 1 1 Laminin Domain II Vps51 PF08700.11 CQR57945.1 - 0.0025 17.9 5.5 0.26 11.4 0.8 3.1 1 1 2 3 3 3 1 Vps51/Vps67 AAA_13 PF13166.6 CQR57945.1 - 0.0026 16.5 0.4 0.0028 16.4 0.4 1.2 1 0 0 1 1 1 1 AAA domain EzrA PF06160.12 CQR57945.1 - 0.0027 16.0 3.3 0.0034 15.6 3.3 1.3 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA ATG16 PF08614.11 CQR57945.1 - 0.0027 17.9 1.2 0.0047 17.2 0.7 1.6 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) Atg14 PF10186.9 CQR57945.1 - 0.0031 16.7 1.1 0.0035 16.5 1.1 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 BRE1 PF08647.11 CQR57945.1 - 0.0032 17.5 1.6 0.0072 16.4 1.6 1.5 1 1 0 1 1 1 1 BRE1 E3 ubiquitin ligase GAS PF13851.6 CQR57945.1 - 0.0035 16.7 0.2 0.0039 16.6 0.2 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding PI3K_P85_iSH2 PF16454.5 CQR57945.1 - 0.0039 16.8 0.5 0.0047 16.5 0.5 1.3 1 1 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF1640 PF07798.11 CQR57945.1 - 0.0043 17.1 3.8 0.0045 17.0 2.6 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) Laminin_I PF06008.14 CQR57945.1 - 0.0049 16.6 1.4 0.0055 16.4 1.4 1.1 1 0 0 1 1 1 1 Laminin Domain I Golgin_A5 PF09787.9 CQR57945.1 - 0.0053 16.3 2.8 0.0058 16.1 2.8 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 Med9 PF07544.13 CQR57945.1 - 0.0053 16.8 0.8 0.076 13.1 0.8 2.2 1 1 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 zf-C4H2 PF10146.9 CQR57945.1 - 0.0056 17.0 2.5 0.0078 16.6 2.4 1.3 1 1 0 1 1 1 1 Zinc finger-containing protein DUF4140 PF13600.6 CQR57945.1 - 0.0065 16.9 0.3 0.1 13.0 0.0 2.1 1 1 1 2 2 2 1 N-terminal domain of unknown function (DUF4140) Macoilin PF09726.9 CQR57945.1 - 0.0067 15.1 0.4 0.0067 15.0 0.4 1.2 1 0 0 1 1 1 1 Macoilin family USP8_interact PF08941.10 CQR57945.1 - 0.0084 15.9 1.3 0.014 15.2 0.9 1.5 1 1 1 2 2 2 1 USP8 interacting Tup_N PF08581.10 CQR57945.1 - 0.0085 16.4 1.5 0.016 15.5 1.1 1.7 1 1 0 1 1 1 1 Tup N-terminal DivIC PF04977.15 CQR57945.1 - 0.0096 15.7 2.0 0.15 11.9 0.1 2.7 2 1 1 3 3 3 1 Septum formation initiator IFT57 PF10498.9 CQR57945.1 - 0.01 14.9 3.6 0.017 14.1 3.7 1.3 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 HrpB7 PF09486.10 CQR57945.1 - 0.01 16.2 0.4 1.2 9.5 0.0 2.1 1 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF4200 PF13863.6 CQR57945.1 - 0.013 15.9 2.5 0.27 11.7 1.0 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Cep57_MT_bd PF06657.13 CQR57945.1 - 0.018 15.5 1.1 1.7 9.1 0.1 2.7 1 1 2 3 3 2 0 Centrosome microtubule-binding domain of Cep57 CC2-LZ PF16516.5 CQR57945.1 - 0.019 15.3 1.3 0.068 13.5 1.0 2.0 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator XhlA PF10779.9 CQR57945.1 - 0.02 15.1 5.2 1.1 9.5 1.2 2.7 1 1 2 3 3 3 0 Haemolysin XhlA OmpH PF03938.14 CQR57945.1 - 0.021 15.2 0.7 0.039 14.3 0.7 1.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) KxDL PF10241.9 CQR57945.1 - 0.024 14.9 0.2 0.096 13.0 0.1 2.0 1 1 0 2 2 1 0 Uncharacterized conserved protein MutS_IV PF05190.18 CQR57945.1 - 0.025 14.9 0.8 1.7 9.1 0.2 2.4 2 1 0 2 2 2 0 MutS family domain IV DUF4795 PF16043.5 CQR57945.1 - 0.026 14.2 2.3 0.2 11.3 1.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Prefoldin_2 PF01920.20 CQR57945.1 - 0.027 14.4 2.7 0.11 12.5 1.7 2.3 1 1 2 3 3 3 0 Prefoldin subunit SKA1 PF07160.12 CQR57945.1 - 0.03 14.2 1.6 0.058 13.2 1.6 1.5 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 BLOC1_2 PF10046.9 CQR57945.1 - 0.032 14.5 2.9 0.16 12.3 2.5 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DLP_helical PF18709.1 CQR57945.1 - 0.035 13.3 2.1 0.22 10.7 2.2 1.9 1 1 1 2 2 2 0 Dynamin-like helical domain DUF4763 PF15960.5 CQR57945.1 - 0.035 13.4 0.1 0.19 11.0 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) APG6_N PF17675.1 CQR57945.1 - 0.037 14.6 0.9 0.063 13.8 0.5 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region WXG100 PF06013.12 CQR57945.1 - 0.042 14.1 0.3 2.1 8.6 0.1 2.8 2 1 1 3 3 3 0 Proteins of 100 residues with WXG FliD_N PF02465.18 CQR57945.1 - 0.044 14.5 0.3 0.27 11.9 0.3 2.1 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Swi5 PF07061.11 CQR57945.1 - 0.05 13.7 1.7 0.48 10.6 1.7 2.5 1 1 0 1 1 1 0 Swi5 Bacillus_HBL PF05791.11 CQR57945.1 - 0.055 13.3 0.3 0.12 12.2 0.1 1.5 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) bZIP_1 PF00170.21 CQR57945.1 - 0.056 13.5 1.2 0.5 10.5 0.6 2.2 1 1 0 1 1 1 0 bZIP transcription factor Sec34 PF04136.15 CQR57945.1 - 0.058 13.3 1.1 0.21 11.5 1.1 1.9 1 1 0 1 1 1 0 Sec34-like family Prominin PF05478.11 CQR57945.1 - 0.059 11.3 0.3 0.062 11.3 0.3 1.1 1 0 0 1 1 1 0 Prominin COG5 PF10392.9 CQR57945.1 - 0.06 13.5 0.6 0.16 12.1 0.3 1.8 1 1 1 2 2 2 0 Golgi transport complex subunit 5 HIP1_clath_bdg PF16515.5 CQR57945.1 - 0.062 13.9 1.7 0.61 10.7 1.1 2.1 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 THOC7 PF05615.13 CQR57945.1 - 0.066 13.5 1.9 0.1 12.9 1.1 1.7 1 1 1 2 2 2 0 Tho complex subunit 7 YgaB PF14182.6 CQR57945.1 - 0.069 13.6 3.0 4.3 7.8 3.0 2.9 1 1 0 1 1 1 0 YgaB-like protein DUF5339 PF17274.2 CQR57945.1 - 0.071 14.0 1.3 9.8 7.1 0.1 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5339) Fib_alpha PF08702.10 CQR57945.1 - 0.075 13.2 3.5 0.2 11.8 3.5 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Cep57_CLD_2 PF14197.6 CQR57945.1 - 0.081 13.0 0.2 0.25 11.5 0.0 1.8 1 1 0 2 2 1 0 Centrosome localisation domain of PPC89 YojJ PF10372.9 CQR57945.1 - 0.085 13.0 1.8 0.96 9.6 1.4 2.5 1 1 1 2 2 2 0 Bacterial membrane-spanning protein N-terminus DUF211 PF02680.14 CQR57945.1 - 0.088 13.0 3.4 0.13 12.5 0.7 2.1 1 1 1 2 2 2 0 Uncharacterized ArCR, COG1888 DUF948 PF06103.11 CQR57945.1 - 0.092 13.0 0.7 0.23 11.7 0.7 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 CQR57945.1 - 0.096 13.3 1.6 0.24 12.0 1.4 1.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Gon7 PF08738.10 CQR57945.1 - 0.11 12.6 0.4 2.4 8.3 0.2 2.0 1 1 1 2 2 2 0 Gon7 family Spc24 PF08286.11 CQR57945.1 - 0.12 12.7 2.7 0.46 10.8 2.5 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF5082 PF16888.5 CQR57945.1 - 0.12 12.7 4.5 0.31 11.3 2.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF641 PF04859.12 CQR57945.1 - 0.12 12.7 1.4 0.48 10.8 0.7 1.9 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) COMP PF11598.8 CQR57945.1 - 0.13 12.8 2.2 11 6.6 0.1 2.7 1 1 1 2 2 2 0 Cartilage oligomeric matrix protein TBK1_CCD1 PF18394.1 CQR57945.1 - 0.23 11.0 3.9 0.42 10.1 3.9 1.6 1 1 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 Fzo_mitofusin PF04799.13 CQR57945.1 - 0.26 10.8 1.9 0.68 9.5 1.8 1.8 1 1 0 1 1 1 0 fzo-like conserved region Cauli_DNA-bind PF03310.13 CQR57945.1 - 0.27 11.3 5.6 0.65 10.1 2.5 2.1 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein DUF4349 PF14257.6 CQR57945.1 - 0.29 10.6 4.9 4.2 6.8 1.5 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Shugoshin_N PF07558.11 CQR57945.1 - 0.34 10.8 2.7 1.5 8.7 0.7 2.2 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region HSBP1 PF06825.12 CQR57945.1 - 0.48 10.3 4.3 1.7 8.5 4.3 2.1 1 1 0 1 1 1 0 Heat shock factor binding protein 1 Halo_GVPC PF05465.13 CQR57945.1 - 0.55 10.5 2.1 36 4.7 0.1 2.9 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat DUF3782 PF12644.7 CQR57945.1 - 2.1 8.6 4.6 37 4.6 1.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) GerE PF00196.19 CQR57947.1 - 1.4e-21 75.7 0.3 1.8e-21 75.4 0.3 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR57947.1 - 5e-09 35.7 0.1 2.8e-08 33.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR57947.1 - 8e-06 25.3 0.2 2.1e-05 23.9 0.1 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 CQR57947.1 - 0.0057 16.0 0.0 0.0093 15.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 CQR57947.1 - 0.0067 16.2 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 CQR57947.1 - 0.0078 16.0 0.1 0.027 14.2 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Trans_reg_C PF00486.28 CQR57947.1 - 0.0096 16.0 0.7 0.58 10.3 0.1 2.0 1 1 1 2 2 2 1 Transcriptional regulatory protein, C terminal KORA PF16509.5 CQR57947.1 - 0.01 16.1 0.1 0.011 15.9 0.1 1.1 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Phage_terminase PF10668.9 CQR57947.1 - 0.015 15.3 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit UPF0122 PF04297.14 CQR57947.1 - 0.071 13.3 0.0 0.085 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_40 PF14493.6 CQR57947.1 - 0.077 13.5 0.0 0.086 13.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR57947.1 - 0.082 12.9 0.1 0.13 12.3 0.1 1.5 1 1 0 1 1 1 0 HTH domain Peripla_BP_3 PF13377.6 CQR57948.1 - 2.5e-27 96.2 0.0 5.6e-27 95.1 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR57948.1 - 5.3e-20 72.0 0.0 7.5e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR57948.1 - 3.1e-18 65.3 0.8 6.1e-18 64.4 0.8 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR57948.1 - 1.3e-06 28.2 0.0 2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_Tnp_ISL3 PF13542.6 CQR57948.1 - 0.00039 19.8 0.1 0.0011 18.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 CQR57948.1 - 0.0042 16.8 0.1 0.013 15.2 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 CQR57948.1 - 0.011 15.7 0.1 0.027 14.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 CQR57948.1 - 0.014 15.1 0.1 0.049 13.4 0.1 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.22 CQR57948.1 - 0.04 14.0 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix DUF3853 PF12964.7 CQR57948.1 - 0.061 13.5 0.1 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3853) HTH_Crp_2 PF13545.6 CQR57948.1 - 0.081 12.9 0.0 0.31 11.1 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR57948.1 - 0.09 12.3 0.1 0.22 11.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Crp PF00325.20 CQR57948.1 - 0.12 12.1 0.1 0.84 9.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HAV_VP PF12944.7 CQR57948.1 - 0.16 11.9 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Hepatitis A virus viral protein VP HTH_29 PF13551.6 CQR57948.1 - 0.21 11.6 0.8 0.67 10.0 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn helix Colicin_V PF02674.16 CQR57949.1 - 5.3e-06 26.5 8.3 0.012 15.6 2.1 2.1 2 0 0 2 2 2 2 Colicin V production protein MIG-14_Wnt-bd PF06664.12 CQR57949.1 - 0.00049 19.4 9.0 0.056 12.7 1.6 2.0 2 0 0 2 2 2 2 Wnt-binding factor required for Wnt secretion DUF2207 PF09972.9 CQR57949.1 - 0.00085 18.2 6.0 0.28 9.9 0.0 2.2 1 1 0 2 2 2 2 Predicted membrane protein (DUF2207) Frag1 PF10277.9 CQR57949.1 - 0.023 14.2 8.7 0.25 10.9 1.3 2.1 2 0 0 2 2 2 0 Frag1/DRAM/Sfk1 family DUF4199 PF13858.6 CQR57949.1 - 0.034 14.6 6.7 0.38 11.1 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DHHC PF01529.20 CQR57949.1 - 0.36 11.0 8.9 1.5 8.9 0.7 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase Pox_A14 PF05767.12 CQR57949.1 - 0.4 10.9 10.2 0.093 12.9 0.9 2.4 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 Ycf4 PF02392.16 CQR57949.1 - 0.95 9.0 3.5 3.1 7.3 0.1 2.1 2 0 0 2 2 2 0 Ycf4 DUF1129 PF06570.11 CQR57949.1 - 7.1 6.1 10.5 0.26 10.7 0.9 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) UPF0182 PF03699.13 CQR57949.1 - 9.3 4.2 8.1 4.3 5.3 1.3 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0182) Peptidase_M75 PF09375.10 CQR57950.1 - 7.8e-38 130.6 2.2 1.2e-37 130.0 2.2 1.3 1 0 0 1 1 1 1 Imelysin DUF1351 PF07083.11 CQR57950.1 - 0.068 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) Dyp_perox PF04261.12 CQR57951.1 - 1.3e-97 326.7 0.0 1.5e-97 326.5 0.0 1.0 1 0 0 1 1 1 1 Dyp-type peroxidase family TAT_signal PF10518.9 CQR57951.1 - 1.3 9.0 10.7 0.21 11.5 1.7 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence FTR1 PF03239.14 CQR57952.1 - 1.6e-22 80.1 12.1 2.6e-22 79.4 12.1 1.3 1 0 0 1 1 1 1 Iron permease FTR1 family Bep_C_terminal PF17841.1 CQR57952.1 - 0.032 14.4 0.6 0.16 12.2 0.0 2.3 3 0 0 3 3 3 0 BID domain of Bartonella effector protein (Bep) TPR_6 PF13174.6 CQR57952.1 - 0.042 14.5 4.9 7.4 7.4 0.1 4.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF4363 PF14276.6 CQR57952.1 - 0.088 12.9 0.0 28 4.9 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4363) Flg_hook PF02120.16 CQR57952.1 - 0.1 12.5 0.2 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK HTH_6 PF01418.17 CQR57953.1 - 3.6e-23 81.3 0.3 1.2e-22 79.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family SIS PF01380.22 CQR57953.1 - 1.5e-16 60.5 0.4 2.1e-16 59.9 0.4 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 CQR57953.1 - 3.3e-06 27.2 0.1 2.2e-05 24.5 0.1 2.1 1 1 1 2 2 2 1 SIS domain HTH_IclR PF09339.10 CQR57953.1 - 0.00018 21.3 0.0 0.00039 20.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 CQR57953.1 - 0.0052 16.3 0.0 0.014 14.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR57953.1 - 0.0059 16.5 0.0 0.018 14.9 0.0 1.9 1 1 0 1 1 1 1 MarR family MarR PF01047.22 CQR57953.1 - 0.0097 15.8 0.0 0.04 13.9 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 CQR57953.1 - 0.041 13.8 0.1 0.53 10.3 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_3 PF01381.22 CQR57953.1 - 0.075 13.1 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix YdaS_antitoxin PF15943.5 CQR57953.1 - 0.14 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_DeoR PF08220.12 CQR57953.1 - 0.15 11.9 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Glucosamine_iso PF01182.20 CQR57954.1 - 1.4e-23 84.0 0.0 1.8e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Sugar-bind PF04198.13 CQR57954.1 - 0.028 13.6 0.3 0.27 10.3 0.1 2.2 2 1 0 2 2 2 0 Putative sugar-binding domain Amidohydro_1 PF01979.20 CQR57955.1 - 1.6e-26 93.4 0.3 2.5e-26 92.8 0.3 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR57955.1 - 1.3e-11 44.6 2.9 1e-06 28.5 0.0 2.8 3 0 0 3 3 3 2 Amidohydrolase family DinB_2 PF12867.7 CQR57955.1 - 0.031 14.8 0.6 0.099 13.2 0.6 1.8 1 1 0 1 1 1 0 DinB superfamily Spore_YhcN_YlaJ PF09580.10 CQR57956.1 - 6.4e-20 71.8 10.4 5.4e-14 52.6 0.4 2.8 1 1 2 3 3 3 2 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Glycos_transf_1 PF00534.20 CQR57957.1 - 4.1e-21 75.3 0.0 6.5e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57957.1 - 3.7e-10 40.3 0.0 6.6e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57957.1 - 0.00016 22.0 0.0 0.00048 20.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 CQR57958.1 - 6.6e-12 45.3 0.0 1.1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57958.1 - 1e-07 32.4 0.0 2.2e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57958.1 - 6.9e-05 23.2 0.0 0.00013 22.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR57958.1 - 0.00028 20.9 0.0 0.00058 19.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 CQR57958.1 - 0.002 18.6 0.1 0.0049 17.3 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 CQR57958.1 - 0.028 14.1 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Starch synthase catalytic domain MutL PF13941.6 CQR57958.1 - 0.22 10.1 0.0 0.56 8.7 0.0 1.6 2 0 0 2 2 2 0 MutL protein Glycos_transf_2 PF00535.26 CQR57959.1 - 7.7e-25 87.7 0.0 1.2e-24 87.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR57959.1 - 6.1e-14 52.5 0.0 1.5e-13 51.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR57959.1 - 1.4e-11 44.4 0.0 3.8e-11 43.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 CQR57959.1 - 0.055 13.4 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Methyltransf_25 PF13649.6 CQR57960.1 - 9e-07 29.5 0.0 2.2e-06 28.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR57960.1 - 0.00015 22.3 0.0 0.00025 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR57960.1 - 0.00025 20.9 0.0 0.00028 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR57960.1 - 0.00028 21.6 0.0 0.00043 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 CQR57960.1 - 0.12 11.9 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Glycos_transf_2 PF00535.26 CQR57961.1 - 6.1e-29 101.0 0.0 7.5e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR57961.1 - 2.3e-16 60.4 0.0 3e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR57961.1 - 4.2e-12 46.1 0.0 7.6e-12 45.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 CQR57961.1 - 0.00048 19.6 0.0 0.00087 18.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 CQR57961.1 - 0.075 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Epimerase PF01370.21 CQR57962.1 - 1.4e-32 113.1 0.0 2.4e-32 112.3 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR57962.1 - 3.1e-28 99.1 0.0 1.6e-27 96.8 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 CQR57962.1 - 1.5e-06 28.3 0.1 2.6e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 CQR57962.1 - 5e-06 25.8 0.0 8.7e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 CQR57962.1 - 3.4e-05 23.1 0.0 0.00012 21.4 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 CQR57962.1 - 0.004 16.7 0.2 0.0058 16.2 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 CQR57962.1 - 0.0053 16.2 0.2 0.012 15.0 0.2 1.6 1 0 0 1 1 1 1 short chain dehydrogenase 3Beta_HSD PF01073.19 CQR57962.1 - 0.0064 15.5 0.0 0.0093 15.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 CQR57962.1 - 0.12 12.3 0.5 0.5 10.3 0.5 1.9 1 1 0 1 1 1 0 KR domain RmlD_sub_bind PF04321.17 CQR57963.1 - 3.1e-23 82.3 0.0 5.1e-23 81.6 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 CQR57963.1 - 8.7e-10 38.5 0.0 1.2e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR57963.1 - 0.008 15.6 0.0 0.073 12.4 0.0 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase KR PF08659.10 CQR57963.1 - 0.21 11.5 0.0 1.1 9.2 0.0 1.9 2 0 0 2 2 2 0 KR domain Polysacc_synt_2 PF02719.15 CQR57964.1 - 1.6e-96 322.9 0.3 2e-96 322.6 0.3 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 CQR57964.1 - 2.5e-29 102.4 0.0 1.9e-28 99.5 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 CQR57964.1 - 2.5e-22 79.2 0.1 9.8e-21 74.0 0.0 2.2 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 CQR57964.1 - 1.9e-20 73.6 0.0 6.6e-20 71.8 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 CQR57964.1 - 1.5e-15 57.1 0.0 4.4e-14 52.3 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 CQR57964.1 - 2e-12 46.9 0.0 3.7e-09 36.1 0.0 3.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 CQR57964.1 - 2.8e-11 43.7 0.0 4.1e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 CQR57964.1 - 5e-06 26.6 0.0 9.2e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 CQR57964.1 - 8.1e-05 22.3 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 CQR57964.1 - 0.00018 21.1 0.0 0.0007 19.1 0.0 1.9 2 1 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 CQR57964.1 - 0.00092 19.5 0.0 0.003 17.8 0.0 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 CQR57964.1 - 0.0012 19.0 0.0 0.0057 16.7 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 CQR57964.1 - 0.015 15.8 0.0 0.058 14.0 0.0 2.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 CQR57964.1 - 0.023 15.1 0.0 0.06 13.8 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.18 CQR57964.1 - 0.069 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Epimerase_2 PF02350.19 CQR57965.1 - 8.2e-88 294.6 0.0 9.7e-88 294.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DNA_ligase_ZBD PF03119.16 CQR57965.1 - 0.013 15.5 0.1 0.028 14.5 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain LpxB PF02684.15 CQR57965.1 - 0.038 12.8 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase Gcd10p PF04189.13 CQR57965.1 - 0.13 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Gcd10p family Glycos_transf_1 PF00534.20 CQR57966.1 - 7.8e-27 93.9 0.0 1.4e-26 93.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR57966.1 - 5.3e-24 85.2 0.0 1.8e-23 83.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 CQR57966.1 - 3.7e-06 27.2 0.0 1.3e-05 25.5 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Trypan_PARP PF05887.11 CQR57966.1 - 3.2 7.7 15.2 5.6 6.9 15.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Glyco_trans_1_2 PF13524.6 CQR57967.1 - 3.2e-25 88.3 0.1 1.2e-24 86.5 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3880 PF12996.7 CQR57967.1 - 2.2e-20 72.5 0.3 3.9e-20 71.7 0.3 1.4 1 0 0 1 1 1 1 DUF based on E. rectale Gene description (DUF3880) Glyco_trans_1_2 PF13524.6 CQR57968.1 - 3.3e-22 78.7 0.0 6.4e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 CQR57968.1 - 1.2e-19 70.1 0.7 2.2e-19 69.3 0.7 1.5 1 0 0 1 1 1 1 DUF based on E. rectale Gene description (DUF3880) AAA_21 PF13304.6 CQR57969.1 - 5.4e-16 59.3 3.3 6.5e-09 36.0 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR57969.1 - 4.7e-14 52.9 0.6 9e-07 28.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 CQR57969.1 - 5.3e-10 39.1 0.0 0.00055 19.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR57969.1 - 1.5e-07 32.1 0.0 2e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 CQR57969.1 - 2.3e-05 24.9 0.0 4.7e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 ABC transporter NACHT PF05729.12 CQR57969.1 - 7.8e-05 22.6 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.6 CQR57969.1 - 9.1e-05 22.1 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR57969.1 - 0.00091 19.5 0.1 0.006 16.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR57969.1 - 0.001 18.8 0.0 0.002 17.9 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 CQR57969.1 - 0.0095 15.5 0.1 0.019 14.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 CQR57969.1 - 0.011 15.8 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR57969.1 - 0.015 15.7 0.1 0.02 15.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR57969.1 - 0.03 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 CQR57969.1 - 0.031 13.8 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MukB PF04310.12 CQR57969.1 - 0.042 13.7 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA PF00004.29 CQR57969.1 - 0.11 13.0 0.0 0.25 11.8 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 CQR57969.1 - 0.13 12.5 0.1 0.23 11.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR57969.1 - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 CQR57969.1 - 0.16 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 TsaE PF02367.17 CQR57969.1 - 0.17 11.9 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 CQR57969.1 - 0.19 11.8 0.0 12 6.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2813 PF11398.8 CQR57969.1 - 0.23 10.7 0.3 0.43 9.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) ABC_ATPase PF09818.9 CQR57969.1 - 0.24 10.2 0.0 0.32 9.8 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class SpoOE-like PF09388.10 CQR57970.1 - 4.1e-12 45.8 0.4 4.8e-12 45.6 0.4 1.1 1 0 0 1 1 1 1 Spo0E like sporulation regulatory protein DUF2142 PF09913.9 CQR57971.1 - 0.0032 16.4 4.1 0.0032 16.4 4.1 2.5 3 0 0 3 3 3 1 Predicted membrane protein (DUF2142) Sulfatase PF00884.23 CQR57972.1 - 3.1e-38 131.9 0.1 4.2e-38 131.5 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 CQR57972.1 - 0.0002 21.1 0.0 0.0018 17.9 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 CQR57972.1 - 0.003 16.7 0.0 0.005 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Phosphoesterase PF04185.14 CQR57972.1 - 0.045 12.9 0.0 0.066 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoesterase family Sigma70_r2 PF04542.14 CQR57974.1 - 4.6e-13 48.7 0.2 1.2e-12 47.4 0.2 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR57974.1 - 3.7e-12 45.7 0.0 6.8e-12 44.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR57974.1 - 7.3e-11 41.4 0.7 4.2e-09 35.8 0.2 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 CQR57974.1 - 0.00029 20.6 0.4 0.0007 19.4 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 CQR57974.1 - 0.00036 20.0 0.0 0.00086 18.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 CQR57974.1 - 0.0022 17.4 0.0 0.0058 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_ECF PF07638.11 CQR57974.1 - 0.007 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.6 CQR57974.1 - 0.013 15.6 0.0 0.037 14.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 CQR57974.1 - 0.019 14.5 0.0 0.077 12.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.12 CQR57974.1 - 0.059 13.2 0.3 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Mga PF08280.11 CQR57974.1 - 0.07 13.2 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.6 CQR57974.1 - 0.079 12.8 0.3 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 CQR57974.1 - 0.096 12.7 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.6 CQR57974.1 - 0.16 12.4 0.0 0.46 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Amidohydro_1 PF01979.20 CQR57975.1 - 1.6e-74 251.3 0.2 1.9e-74 251.1 0.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR57975.1 - 8.6e-24 84.8 0.2 6.7e-16 58.8 0.1 2.1 1 1 1 2 2 2 2 Amidohydrolase family DUF4719 PF15843.5 CQR57975.1 - 0.19 11.8 0.0 0.31 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4719) Acetyltransf_1 PF00583.25 CQR57976.1 - 3.3e-16 59.6 0.1 4.3e-16 59.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR57976.1 - 1.4e-12 47.6 0.0 2.4e-12 46.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR57976.1 - 1e-11 45.1 0.1 1.5e-11 44.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR57976.1 - 2.4e-06 27.4 0.0 4.9e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 CQR57976.1 - 1.1e-05 25.5 0.0 1.9e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 CQR57976.1 - 3e-05 24.1 0.3 0.0043 17.1 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR57976.1 - 4.5e-05 23.6 0.1 0.00011 22.3 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR57976.1 - 0.015 16.0 0.1 0.017 15.8 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR57976.1 - 0.036 13.8 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1325 PF07039.11 CQR57976.1 - 0.15 12.2 0.0 0.29 11.2 0.0 1.6 1 1 0 1 1 1 0 SGF29 tudor-like domain Yae1_N PF09811.9 CQR57977.1 - 0.0017 18.1 1.3 0.003 17.2 1.3 1.4 1 0 0 1 1 1 1 Essential protein Yae1, N terminal DUF2205 PF10224.9 CQR57978.1 - 0.1 12.6 0.2 0.13 12.2 0.2 1.2 1 0 0 1 1 1 0 Short coiled-coil protein Methyltransf_19 PF04672.12 CQR57980.1 - 0.031 13.8 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl methyltransferase DUF3755 PF12579.8 CQR57980.1 - 0.13 12.0 0.8 4.5 7.0 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3755) Acetyltransf_3 PF13302.7 CQR57981.1 - 1.7e-20 74.1 0.0 2.1e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR57981.1 - 2.5e-08 34.2 0.0 3.2e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR57981.1 - 2.1e-06 27.5 0.0 2.8e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR57981.1 - 0.023 14.7 0.0 0.074 13.0 0.0 1.9 2 1 1 3 3 3 0 FR47-like protein Acetyltransf_7 PF13508.7 CQR57981.1 - 0.095 13.1 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Merozoite_SPAM PF07133.11 CQR57982.1 - 0.1 12.6 0.0 0.3 11.0 0.0 1.7 1 1 1 2 2 2 0 Merozoite surface protein (SPAM) NTP_transferase PF00483.23 CQR57983.1 - 1.3e-51 175.6 0.0 1.4e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR57983.1 - 8.2e-12 45.8 0.0 2.4e-11 44.3 0.0 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 CQR57984.1 - 1.6e-26 93.1 0.0 2.2e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR57984.1 - 1.3e-16 61.2 0.0 1.8e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR57984.1 - 2.3e-05 24.0 0.0 3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 CQR57984.1 - 0.0018 18.0 0.0 0.026 14.2 0.0 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 CQR57984.1 - 0.012 16.1 0.0 0.024 15.1 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 CQR57985.1 - 2.1e-13 50.4 0.0 3.7e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 CQR57985.1 - 2.3e-06 28.0 0.0 5.4e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR57985.1 - 0.0077 15.7 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 CQR57986.1 - 1.1e-19 70.9 0.0 1.5e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR57986.1 - 1.2e-07 31.9 0.0 1.4e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR57986.1 - 0.0083 15.6 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 RAMA PF18755.1 CQR57988.1 - 7.8e-17 61.7 16.1 1.1 9.7 0.0 16.1 8 2 9 17 17 17 5 Restriction Enzyme Adenine Methylase Associated TrmE_N PF10396.9 CQR57988.1 - 0.041 14.2 0.1 1.6 9.1 0.0 3.1 2 2 0 2 2 2 0 GTP-binding protein TrmE N-terminus ATPgrasp_YheCD PF14398.6 CQR57989.1 - 4e-62 209.8 0.0 4.7e-62 209.5 0.0 1.1 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR57989.1 - 2.3e-07 30.3 0.0 0.0083 15.4 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 CQR57989.1 - 0.046 13.1 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain PS_Dcarbxylase PF02666.15 CQR57990.1 - 9.7e-60 201.5 0.0 1.2e-59 201.3 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase DUF3422 PF11902.8 CQR57990.1 - 0.026 13.6 0.0 0.038 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3422) zf-XS PF03470.14 CQR57990.1 - 0.055 13.7 0.0 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 XS zinc finger domain His_Phos_1 PF00300.22 CQR57991.1 - 6e-35 120.7 0.0 6.4e-27 94.5 0.0 2.1 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) DUF488 PF04343.13 CQR57992.1 - 3e-33 115.0 0.6 3.9e-33 114.6 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 HTH_18 PF12833.7 CQR57993.1 - 5.5e-21 74.6 0.2 9.4e-21 73.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR57993.1 - 7.2e-17 61.0 0.1 2.6e-08 33.8 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR57993.1 - 7.2e-08 32.4 0.2 1.4e-07 31.5 0.2 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR57993.1 - 8.8e-05 22.1 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 CQR57993.1 - 0.0081 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_23 PF13384.6 CQR57993.1 - 0.042 13.6 1.1 0.5 10.2 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain AraC_binding_2 PF14525.6 CQR57993.1 - 0.061 13.0 0.3 0.19 11.4 0.3 1.8 1 1 0 1 1 1 0 AraC-binding-like domain Aminotran_1_2 PF00155.21 CQR57994.1 - 1.9e-17 63.5 0.0 3.3e-17 62.7 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 CQR57994.1 - 4.1e-13 48.8 0.0 1.7e-12 46.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Pyridox_ox_2 PF12900.7 CQR57995.1 - 7.4e-26 90.8 0.0 9.7e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.12 CQR57995.1 - 3.7e-13 49.5 0.0 4.5e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Putative FMN-binding domain Putative_PNPOx PF01243.20 CQR57995.1 - 1.4e-11 44.4 0.0 4.4e-11 42.8 0.0 1.9 2 1 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 CQR57995.1 - 4.4e-06 26.4 0.0 0.00015 21.4 0.0 2.1 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase like GRIM-19 PF06212.12 CQR57995.1 - 0.084 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 GRIM-19 protein MotY_N PF18393.1 CQR57995.1 - 0.15 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 MotY N-terminal domain Aminotran_1_2 PF00155.21 CQR57996.1 - 1.7e-25 90.0 0.0 2.2e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II EcsB PF05975.12 CQR57997.1 - 2.4e-78 263.7 26.7 2.9e-78 263.4 26.7 1.0 1 0 0 1 1 1 1 Bacterial ABC transporter protein EcsB ABC_tran PF00005.27 CQR57998.1 - 3.8e-29 102.0 0.0 5.1e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR57998.1 - 4.1e-12 46.5 1.0 1.8e-08 34.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR57998.1 - 0.011 15.5 0.1 0.019 14.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 CQR57998.1 - 0.014 14.8 0.2 0.049 13.1 0.2 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR57998.1 - 0.049 13.3 0.1 0.17 11.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain GP57 PF17594.2 CQR57998.1 - 0.15 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Phage Tail fiber assembly helper gene product 57 MukB PF04310.12 CQR57998.1 - 0.16 11.8 0.1 0.4 10.4 0.1 1.6 2 0 0 2 2 2 0 MukB N-terminal MMR_HSR1 PF01926.23 CQR57998.1 - 0.22 11.6 0.2 0.33 11.0 0.2 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase DEAD PF00270.29 CQR57999.1 - 5.3e-40 137.1 1.0 7.4e-40 136.6 0.2 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR57999.1 - 6.9e-25 87.6 0.0 1.5e-24 86.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR57999.1 - 4.4e-05 23.6 0.0 9e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 CQR57999.1 - 0.0051 16.1 0.1 0.0081 15.4 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase CMS1 PF14617.6 CQR57999.1 - 0.044 13.1 0.0 0.09 12.1 0.0 1.5 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit adh_short PF00106.25 CQR58000.1 - 1.9e-58 197.1 0.3 2.6e-58 196.7 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR58000.1 - 1.3e-43 149.2 0.2 1.6e-43 148.9 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR58000.1 - 1.7e-13 50.8 0.1 2.6e-13 50.3 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR58000.1 - 0.025 14.1 0.1 0.056 12.9 0.1 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family CheX PF13690.6 CQR58001.1 - 1.1e-15 57.6 0.5 1.5e-15 57.1 0.5 1.3 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.12 CQR58001.1 - 3.4e-12 46.0 0.5 7.6e-12 44.9 0.5 1.6 1 0 0 1 1 1 1 CheC-like family DUF2138 PF09909.9 CQR58001.1 - 0.01 14.2 0.0 0.011 14.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) Fim-adh_lectin PF09222.10 CQR58001.1 - 0.013 15.0 0.1 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 Fimbrial adhesin F17-AG, lectin domain DapB_N PF01113.20 CQR58001.1 - 0.024 14.7 0.1 0.037 14.2 0.1 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus LysR_substrate PF03466.20 CQR58002.1 - 4.1e-43 147.2 0.0 5.6e-43 146.7 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR58002.1 - 5.4e-18 64.7 0.1 1.1e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF3112 PF11309.8 CQR58002.1 - 0.0083 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3112) HTH_24 PF13412.6 CQR58002.1 - 0.093 12.3 0.1 0.26 10.9 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PHP PF02811.19 CQR58003.1 - 9.8e-13 48.7 0.1 4.6e-12 46.5 0.1 2.0 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 CQR58003.1 - 0.041 13.6 0.1 0.088 12.6 0.1 1.5 1 0 0 1 1 1 0 PHP-associated Nitroreductase PF00881.24 CQR58004.1 - 5.2e-23 82.0 2.3 3.1e-22 79.4 2.3 2.0 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 CQR58004.1 - 1.6e-05 24.6 0.0 0.037 13.6 0.0 2.6 2 1 0 2 2 2 2 Putative TM nitroreductase DUF3349 PF11829.8 CQR58004.1 - 0.0012 19.5 0.0 0.016 16.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3349) Acetyltransf_3 PF13302.7 CQR58005.1 - 5.2e-17 62.8 0.0 5.5e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR58005.1 - 2.2e-06 27.9 0.0 3.1e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Metallophos PF00149.28 CQR58006.1 - 3.5e-12 47.3 0.3 5.4e-12 46.6 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR58006.1 - 2.4e-09 37.6 0.1 4.4e-09 36.8 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 CQR58006.1 - 0.0024 17.3 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Ion_trans_2 PF07885.16 CQR58007.1 - 3.3e-10 39.8 16.7 7.9e-10 38.6 12.6 2.6 2 1 0 2 2 2 1 Ion channel DUF1345 PF07077.11 CQR58007.1 - 1.5e-05 24.8 2.8 1.5e-05 24.8 2.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1345) MIG-14_Wnt-bd PF06664.12 CQR58007.1 - 0.003 16.8 9.8 0.0038 16.5 9.8 1.2 1 0 0 1 1 1 1 Wnt-binding factor required for Wnt secretion DUF3891 PF13030.6 CQR58008.1 - 1.1e-59 201.9 0.0 1.3e-59 201.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3891) Fer2_3 PF13085.6 CQR58009.1 - 2.5e-28 98.3 0.7 3.5e-28 97.8 0.0 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 CQR58009.1 - 3.3e-10 40.3 5.0 7.8e-10 39.1 2.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 CQR58009.1 - 5.4e-08 33.3 5.0 0.00035 21.1 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 CQR58009.1 - 1.4e-07 31.5 4.1 1.4e-07 31.5 4.1 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 CQR58009.1 - 5.5e-07 29.7 6.1 0.00058 20.0 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 CQR58009.1 - 8.6e-06 26.2 9.4 1.5e-05 25.4 5.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 CQR58009.1 - 0.0014 18.6 1.4 0.0014 18.6 1.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 CQR58009.1 - 0.0019 17.9 17.3 0.002 17.9 2.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 CQR58009.1 - 0.0051 17.5 0.9 0.15 12.8 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 CQR58009.1 - 0.0098 16.4 0.2 0.0098 16.4 0.2 3.0 4 0 0 4 4 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 CQR58009.1 - 0.012 15.7 16.6 0.29 11.3 1.2 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 CQR58009.1 - 0.028 14.6 6.5 0.4 10.9 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 CQR58009.1 - 0.035 13.9 10.8 1.5 8.7 0.9 3.1 2 1 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 CQR58009.1 - 0.048 14.6 1.1 0.048 14.6 1.1 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 CQR58009.1 - 0.059 13.5 9.4 0.065 13.4 0.7 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR58009.1 - 0.069 13.7 0.8 0.069 13.7 0.8 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 CQR58009.1 - 0.11 13.5 15.1 0.083 13.8 9.6 3.0 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain FAD_binding_2 PF00890.24 CQR58010.1 - 1.9e-91 307.3 0.0 2.3e-91 307.0 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 CQR58010.1 - 8e-40 135.8 0.1 1.4e-39 135.0 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 CQR58010.1 - 8.4e-08 31.8 0.1 8.9e-05 21.9 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR58010.1 - 2.7e-05 23.1 1.6 0.00017 20.4 0.3 2.5 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 CQR58010.1 - 3.4e-05 23.4 0.3 7.4e-05 22.3 0.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 CQR58010.1 - 4.8e-05 22.6 0.8 4.8e-05 22.6 0.8 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 CQR58010.1 - 0.011 15.0 1.4 0.039 13.3 1.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 CQR58010.1 - 0.013 15.7 0.5 0.036 14.3 0.5 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Tachylectin PF14517.6 CQR58010.1 - 0.047 13.2 0.2 1.2 8.6 0.1 2.5 2 0 0 2 2 2 0 Tachylectin DAO PF01266.24 CQR58010.1 - 0.061 12.9 0.9 0.12 11.9 0.9 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR58010.1 - 0.099 11.9 0.3 0.19 10.9 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.17 CQR58010.1 - 0.14 11.4 0.6 1.1 8.5 0.3 2.1 2 0 0 2 2 2 0 Thi4 family Sdh_cyt PF01127.22 CQR58011.1 - 3.8e-14 52.8 17.9 4.2e-12 46.2 7.0 2.3 1 1 1 2 2 2 2 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LysR_substrate PF03466.20 CQR58012.1 - 1.2e-45 155.5 0.1 1.5e-45 155.2 0.1 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR58012.1 - 1.3e-21 76.3 1.1 4e-20 71.5 0.1 3.3 4 0 0 4 4 4 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR58012.1 - 0.008 16.0 0.2 0.021 14.6 0.1 1.8 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 CQR58012.1 - 0.077 12.6 0.2 0.71 9.5 0.3 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PBP_like PF12727.7 CQR58012.1 - 0.12 11.5 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 PBP superfamily domain TrkA_N PF02254.18 CQR58013.1 - 5.2e-26 91.2 1.2 1.2e-25 90.0 0.2 2.0 3 0 0 3 3 3 1 TrkA-N domain TrkA_C PF02080.21 CQR58013.1 - 1.2e-12 47.5 0.6 2e-11 43.5 0.0 2.6 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_2 PF03446.15 CQR58013.1 - 0.00014 22.1 0.6 0.00025 21.3 0.2 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR58013.1 - 0.00029 21.4 0.1 0.0014 19.2 0.0 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 CQR58013.1 - 0.0013 18.1 0.1 0.0023 17.3 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 CQR58013.1 - 0.0067 16.0 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 CQR58013.1 - 0.0094 15.9 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 CQR58013.1 - 0.012 15.6 0.2 2.3 8.2 0.0 2.4 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Epimerase PF01370.21 CQR58013.1 - 0.018 14.5 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.14 CQR58013.1 - 0.026 13.8 0.3 0.039 13.2 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkH PF02386.16 CQR58014.1 - 4.7e-59 200.2 32.6 9.1e-59 199.2 32.6 1.3 1 1 0 1 1 1 1 Cation transport protein CPBP PF02517.16 CQR58015.1 - 7.9e-11 42.2 6.5 7.9e-11 42.2 6.5 3.4 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease MerR_1 PF13411.6 CQR58016.1 - 6.8e-17 61.3 0.0 1.1e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR58016.1 - 7.3e-11 41.6 0.0 1.5e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_17 PF12728.7 CQR58016.1 - 0.0075 16.4 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MerR-DNA-bind PF09278.11 CQR58016.1 - 0.029 14.9 0.1 0.15 12.6 0.1 2.0 1 1 0 1 1 1 0 MerR, DNA binding TetR_C_3 PF08362.11 CQR58016.1 - 0.086 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 YcdC-like protein, C-terminal region Aldo_ket_red PF00248.21 CQR58017.1 - 1.8e-49 168.5 0.2 1.8e-47 162.0 0.2 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family UvrC_HhH_N PF08459.11 CQR58018.1 - 1.8e-55 187.1 0.0 3.4e-55 186.2 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 CQR58018.1 - 8e-10 38.9 0.2 1.8e-09 37.7 0.2 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.19 CQR58018.1 - 8.6e-08 31.7 5.5 2.4e-07 30.3 5.5 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_2 PF12826.7 CQR58018.1 - 2.5e-06 27.5 0.0 1.1e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 CQR58018.1 - 2.8e-06 27.8 0.6 7e-06 26.6 0.6 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 CQR58018.1 - 0.036 14.6 0.5 0.36 11.5 0.0 2.4 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold CdvA PF18822.1 CQR58018.1 - 0.49 10.2 3.3 0.52 10.1 1.0 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Thioredoxin PF00085.20 CQR58019.1 - 4.8e-33 113.2 0.0 5.3e-33 113.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 CQR58019.1 - 7.6e-09 36.0 0.0 4.7e-08 33.5 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 CQR58019.1 - 1.2e-07 31.9 0.0 1.8e-05 24.9 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 CQR58019.1 - 1.9e-06 27.7 0.0 2.2e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.12 CQR58019.1 - 2.9e-05 23.7 0.0 4.3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin_3 PF13192.6 CQR58019.1 - 5.4e-05 23.2 0.0 6.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.10 CQR58019.1 - 9.5e-05 22.1 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin Glutaredoxin PF00462.24 CQR58019.1 - 0.00038 20.6 0.0 0.00058 20.0 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin HyaE PF07449.11 CQR58019.1 - 0.00055 19.9 0.0 0.00084 19.3 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.21 CQR58019.1 - 0.00077 19.4 0.0 0.001 19.0 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family TraF PF13728.6 CQR58019.1 - 0.0011 18.9 0.0 0.0012 18.7 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF836 PF05768.14 CQR58019.1 - 0.0067 16.8 0.0 0.0087 16.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 CQR58019.1 - 0.0067 15.8 0.0 0.0078 15.6 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_5 PF13743.6 CQR58019.1 - 0.039 13.6 0.0 6.5 6.4 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin DnaI_N PF07319.11 CQR58021.1 - 4.5e-19 68.9 0.4 1.4e-18 67.3 0.0 2.0 2 0 0 2 2 2 1 Primosomal protein DnaI N-terminus IstB_IS21 PF01695.17 CQR58021.1 - 4.8e-14 52.5 0.0 7.7e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AFG1_ATPase PF03969.16 CQR58021.1 - 4.8e-07 29.0 0.0 1.1e-06 27.9 0.0 1.5 2 0 0 2 2 2 1 AFG1-like ATPase Bac_DnaA PF00308.18 CQR58021.1 - 0.00088 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein RNA_helicase PF00910.22 CQR58021.1 - 0.01 16.2 0.0 0.022 15.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PIF1 PF05970.14 CQR58021.1 - 0.016 14.4 0.7 0.038 13.2 0.1 1.8 2 0 0 2 2 2 0 PIF1-like helicase TsaE PF02367.17 CQR58021.1 - 0.064 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 CQR58021.1 - 0.065 13.7 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DnaB_2 PF07261.11 CQR58022.1 - 2.2e-05 24.1 0.2 0.00011 21.9 0.0 2.3 3 0 0 3 3 3 1 Replication initiation and membrane attachment HAUS-augmin3 PF14932.6 CQR58022.1 - 0.11 12.1 0.1 0.17 11.4 0.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 YuiB PF14068.6 CQR58023.1 - 4.1e-28 97.9 14.3 1.2e-27 96.4 14.3 1.6 1 1 0 1 1 1 1 Putative membrane protein PrgI PF12666.7 CQR58023.1 - 2.1 9.1 8.8 1.9 9.2 8.1 1.4 1 1 0 1 1 1 0 PrgI family protein DUF4173 PF13777.6 CQR58023.1 - 3 7.2 10.1 3.2 7.1 9.3 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4173) DUF2207 PF09972.9 CQR58023.1 - 5.3 5.7 7.5 5.1 5.8 7.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Chlor_dismutase PF06778.12 CQR58024.1 - 1.7e-74 249.6 0.1 2.1e-74 249.3 0.1 1.1 1 0 0 1 1 1 1 Chlorite dismutase RVT_1 PF00078.27 CQR58025.1 - 2.1e-41 141.9 0.1 4e-41 141.0 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 CQR58025.1 - 0.0094 16.2 0.1 0.0094 16.2 0.1 2.2 2 0 0 2 2 2 1 N-terminal domain of reverse transcriptase Met_10 PF02475.16 CQR58025.1 - 0.023 14.4 0.2 4.8 6.9 0.0 3.0 2 1 1 3 3 3 0 Met-10+ like-protein TssD PF17642.1 CQR58025.1 - 0.032 14.0 0.0 0.082 12.7 0.0 1.6 1 0 0 1 1 1 0 Hemolysin coregulated protein Hcp (TssD) DUF1280 PF06918.14 CQR58025.1 - 0.2 11.2 3.5 0.089 12.4 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1280) Pyr_redox_2 PF07992.14 CQR58027.1 - 9.6e-43 146.5 0.1 1.2e-42 146.2 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR58027.1 - 2e-05 25.1 1.0 0.16 12.6 0.1 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 CQR58027.1 - 0.0019 18.2 0.0 1.8 8.5 0.0 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 CQR58027.1 - 0.0039 17.4 0.0 0.046 14.0 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 CQR58027.1 - 0.011 14.7 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase DAO PF01266.24 CQR58027.1 - 0.061 12.9 0.2 0.16 11.5 0.2 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR58028.1 - 4.4e-34 118.1 0.0 5.2e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR58028.1 - 1.3e-29 103.5 3.5 8.9e-28 97.4 0.0 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR58028.1 - 1.2e-15 57.9 1.5 3.7e-11 43.4 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 CQR58028.1 - 1.4e-13 50.4 4.6 9e-07 27.9 0.2 3.8 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.24 CQR58028.1 - 1.4e-06 28.2 0.4 0.016 14.8 0.1 2.7 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 CQR58028.1 - 1.8e-06 27.6 0.3 5.8e-06 25.9 0.3 1.5 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 CQR58028.1 - 2.2e-06 27.0 0.2 0.00044 19.4 0.1 2.8 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 CQR58028.1 - 3.2e-06 26.5 1.0 0.47 9.5 0.2 3.2 2 1 0 3 3 3 3 Glucose inhibited division protein A K_oxygenase PF13434.6 CQR58028.1 - 6.9e-06 25.4 0.1 0.00027 20.2 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 CQR58028.1 - 1.7e-05 25.0 0.1 3.4e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 CQR58028.1 - 6.7e-05 22.4 0.0 0.00084 18.7 0.0 2.5 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 CQR58028.1 - 0.0074 15.6 0.0 0.16 11.3 0.0 2.3 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 CQR58028.1 - 0.0077 15.5 0.1 0.061 12.6 0.1 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 CQR58028.1 - 0.0084 16.1 1.1 0.36 10.8 0.0 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding MCRA PF06100.11 CQR58028.1 - 0.019 13.7 0.0 0.034 12.9 0.0 1.3 1 0 0 1 1 1 0 MCRA family FMO-like PF00743.19 CQR58028.1 - 0.034 12.6 0.0 0.046 12.2 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Trp_halogenase PF04820.14 CQR58028.1 - 0.036 12.9 0.1 0.11 11.4 0.1 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.6 CQR58028.1 - 0.049 14.1 0.2 1.1 9.7 0.0 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 CQR58028.1 - 0.14 11.3 0.3 0.32 10.2 0.3 1.5 1 0 0 1 1 1 0 FAD binding domain DUF2480 PF10652.9 CQR58028.1 - 0.15 12.0 0.0 28 4.6 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2480) ATPgrasp_YheCD PF14398.6 CQR58030.1 - 3.1e-52 177.4 0.0 3.4e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 CQR58030.1 - 3.9e-07 29.6 0.0 0.0046 16.2 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 CQR58030.1 - 0.0016 18.5 0.0 1.2 9.1 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain GSH-S_ATP PF02955.16 CQR58030.1 - 0.02 14.3 0.0 0.033 13.6 0.0 1.7 1 1 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain TTL PF03133.15 CQR58030.1 - 0.036 13.2 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family AbrB-like PF14250.6 CQR58030.1 - 0.13 12.4 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator Dala_Dala_lig_C PF07478.13 CQR58030.1 - 0.17 11.4 0.2 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus DUF2964 PF11177.8 CQR58031.1 - 0.087 13.0 4.2 0.15 12.3 4.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2964) DUF2079 PF09852.9 CQR58031.1 - 0.78 8.5 4.8 0.86 8.4 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) DUF1461 PF07314.11 CQR58031.1 - 0.9 9.4 5.7 0.97 9.3 5.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) DUF4131 PF13567.6 CQR58031.1 - 1.2 8.8 3.4 1.4 8.6 3.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Methyltransf_25 PF13649.6 CQR58032.1 - 3.2e-18 66.2 0.0 4.6e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR58032.1 - 4.6e-15 55.8 0.0 7.4e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR58032.1 - 2.4e-14 53.7 0.0 3.6e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58032.1 - 3.4e-14 53.4 0.0 4.8e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 CQR58032.1 - 6.7e-12 45.2 0.0 1e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 CQR58032.1 - 3e-11 43.4 0.0 5.8e-11 42.5 0.0 1.6 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_31 PF13847.6 CQR58032.1 - 3.8e-11 43.0 0.0 5.1e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 CQR58032.1 - 1.6e-07 30.9 0.0 1.9e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 CQR58032.1 - 2.4e-05 23.9 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_PK PF05891.12 CQR58032.1 - 0.00048 19.7 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.11 CQR58032.1 - 0.00069 19.3 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 CQR58032.1 - 0.045 13.1 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PSDC PF12588.8 CQR58032.1 - 0.17 11.9 0.0 0.36 10.8 0.0 1.5 1 0 0 1 1 1 0 Phophatidylserine decarboxylase Fe-S_biosyn PF01521.20 CQR58033.1 - 1.8e-21 76.4 0.0 2e-21 76.3 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Radical_SAM PF04055.21 CQR58034.1 - 7.9e-18 65.4 0.1 1.2e-17 64.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Pyr_redox_2 PF07992.14 CQR58035.1 - 1e-37 130.0 0.0 1.2e-37 129.7 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR58035.1 - 4e-10 40.1 0.0 7.2e-08 32.9 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR58035.1 - 1.4e-07 31.7 0.0 0.0028 17.8 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 CQR58035.1 - 1.4e-06 27.7 0.0 5.8e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 CQR58035.1 - 2.3e-06 27.7 0.2 0.051 13.6 0.0 3.1 3 1 1 4 4 4 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 CQR58035.1 - 0.00011 21.4 0.0 0.0024 17.0 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 CQR58035.1 - 0.00052 19.4 0.0 0.00073 18.9 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 CQR58035.1 - 0.014 15.7 0.0 3 8.1 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain DAO PF01266.24 CQR58035.1 - 0.13 11.8 0.8 1.2 8.7 0.1 2.3 2 1 0 2 2 2 0 FAD dependent oxidoreductase DUF4028 PF13220.6 CQR58035.1 - 0.22 11.3 0.0 0.4 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4028) DUF1450 PF07293.11 CQR58036.1 - 1.8e-31 107.8 0.3 2e-31 107.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1450) 2Fe-2S_thioredx PF01257.19 CQR58036.1 - 0.0098 15.7 0.0 0.01 15.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF2811 PF10929.8 CQR58036.1 - 0.06 13.6 0.1 0.2 11.9 0.1 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2811) NifU PF01106.17 CQR58037.1 - 9.5e-28 96.2 0.4 1.1e-27 95.9 0.4 1.1 1 0 0 1 1 1 1 NifU-like domain FeS_assembly_P PF01883.19 CQR58037.1 - 0.051 13.8 0.1 0.075 13.2 0.1 1.4 1 1 0 1 1 1 0 Iron-sulfur cluster assembly protein Lipoprotein_9 PF03180.14 CQR58038.1 - 1.2e-100 335.5 3.8 1.4e-100 335.3 3.8 1.1 1 0 0 1 1 1 1 NLPA lipoprotein SBP_bac_11 PF13531.6 CQR58038.1 - 0.00018 21.4 1.6 0.00024 20.9 1.6 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein NMT1 PF09084.11 CQR58038.1 - 0.041 13.8 0.3 0.06 13.3 0.3 1.4 1 1 0 1 1 1 0 NMT1/THI5 like PT PF04886.12 CQR58038.1 - 0.18 11.4 5.7 0.37 10.4 5.7 1.5 1 0 0 1 1 1 0 PT repeat LPAM_1 PF08139.12 CQR58038.1 - 0.6 10.7 5.0 2.3 8.9 5.0 2.0 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_1 PF00528.22 CQR58039.1 - 1.8e-20 73.5 13.5 1.8e-20 73.5 13.5 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR58040.1 - 7.7e-35 120.4 0.1 1.5e-34 119.5 0.0 1.5 2 0 0 2 2 2 1 ABC transporter NIL PF09383.10 CQR58040.1 - 2.5e-18 65.7 0.2 4.7e-18 64.8 0.2 1.5 1 0 0 1 1 1 1 NIL domain AAA_21 PF13304.6 CQR58040.1 - 1.7e-06 28.1 0.5 0.053 13.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR58040.1 - 1.9e-05 24.9 0.4 0.0001 22.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR58040.1 - 0.00028 20.4 0.1 0.0013 18.3 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR58040.1 - 0.0021 18.5 0.4 0.0061 17.0 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 CQR58040.1 - 0.0026 17.5 0.1 0.0051 16.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR58040.1 - 0.0044 16.9 0.1 0.0083 16.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 CQR58040.1 - 0.0074 16.8 1.2 0.013 16.0 0.4 1.7 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 CQR58040.1 - 0.022 13.6 0.2 1.7 7.3 0.3 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class GTP_EFTU PF00009.27 CQR58040.1 - 0.031 13.8 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 CQR58040.1 - 0.09 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 CQR58040.1 - 0.21 11.9 0.5 2.1 8.7 0.5 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit HEPN_Cthe2314 PF18730.1 CQR58041.1 - 3.1e-55 186.9 2.4 4.3e-55 186.5 2.4 1.2 1 0 0 1 1 1 1 Cthe_2314-like HEPN HEPN_LA2681 PF18733.1 CQR58041.1 - 0.014 14.7 3.4 0.035 13.4 3.4 1.6 1 1 0 1 1 1 0 LA2681-like HEPN YlbD_coat PF14071.6 CQR58041.1 - 0.025 14.8 1.7 0.033 14.5 0.5 1.7 2 0 0 2 2 2 0 Putative coat protein UbiD PF01977.16 CQR58042.1 - 4.4e-117 391.4 0.0 2.3e-113 379.2 0.0 2.0 2 0 0 2 2 2 2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase COX15-CtaA PF02628.15 CQR58043.1 - 9.9e-35 120.1 27.6 4e-28 98.4 20.2 2.2 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein DUF962 PF06127.11 CQR58043.1 - 0.23 11.6 4.0 0.25 11.4 0.0 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF962) DUF2070 PF09843.9 CQR58043.1 - 0.39 9.0 11.4 0.14 10.4 1.7 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2070) Pox_I5 PF04713.12 CQR58043.1 - 0.7 10.0 11.2 3.7 7.7 0.1 4.0 3 1 1 4 4 4 0 Poxvirus protein I5 7TMR-DISM_7TM PF07695.11 CQR58043.1 - 0.84 9.5 19.5 0.61 9.9 6.6 2.4 2 0 0 2 2 2 0 7TM diverse intracellular signalling SLATT_fungal PF18142.1 CQR58043.1 - 3.7 7.6 4.8 15 5.6 0.1 3.1 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain DUF3290 PF11694.8 CQR58043.1 - 5.6 6.9 8.6 11 6.0 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3290) Thioredoxin PF00085.20 CQR58044.1 - 3.2e-17 62.4 0.0 3.6e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 CQR58044.1 - 0.0024 17.7 0.1 0.004 16.9 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 CQR58044.1 - 0.0088 16.5 0.2 0.072 13.5 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 CQR58044.1 - 0.009 16.3 0.1 0.023 15.0 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.6 CQR58044.1 - 0.037 14.2 0.2 0.059 13.6 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin-like Polysacc_synt PF01943.17 CQR58045.1 - 1.4e-24 86.9 15.1 1.4e-24 86.9 15.1 2.7 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 CQR58045.1 - 2.3e-20 73.1 29.2 2.3e-20 73.1 29.2 4.3 4 2 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 CQR58045.1 - 8.2e-07 28.8 29.4 3.8e-05 23.4 16.3 4.6 3 2 2 5 5 5 2 MatE MurJ PF03023.14 CQR58045.1 - 7.3e-05 21.6 30.3 7.3e-05 21.6 30.3 1.8 1 1 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_3 PF13440.6 CQR58045.1 - 0.00029 20.2 19.0 0.0011 18.2 1.9 3.1 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein DUF456 PF04306.13 CQR58046.1 - 1.7e-36 125.6 24.0 1.7e-36 125.6 24.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF456) Gly-zipper_Omp PF13488.6 CQR58046.1 - 6.4 6.9 10.3 0.16 12.0 3.0 2.2 2 1 0 2 2 2 0 Glycine zipper Hydrolase_3 PF08282.12 CQR58047.1 - 3.8e-57 194.0 0.0 4.3e-54 183.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 CQR58047.1 - 2.1e-15 57.0 0.3 7e-08 32.3 0.1 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 CQR58047.1 - 1.1e-11 45.4 0.9 3.9e-05 24.0 0.0 3.9 3 1 1 4 4 4 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 CQR58047.1 - 1.1e-05 25.7 0.1 0.014 15.5 0.0 3.2 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR58047.1 - 0.00015 22.2 0.1 0.62 10.4 0.0 3.4 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 CQR58047.1 - 0.0016 18.5 0.0 0.0046 17.0 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PDU_like PF15953.5 CQR58047.1 - 0.014 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Putative propanediol utilisation Transpeptidase PF00905.22 CQR58048.1 - 9.3e-55 186.0 3.3 1.6e-54 185.2 3.3 1.4 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 CQR58048.1 - 1.2e-24 87.7 1.8 2.6e-24 86.5 1.8 1.6 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain Transpeptidase PF00905.22 CQR58049.1 - 1.2e-51 175.8 3.0 1.8e-51 175.2 3.0 1.3 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 CQR58049.1 - 3.2e-23 83.0 2.4 7.2e-23 81.9 2.4 1.5 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain Transglut_core PF01841.19 CQR58050.1 - 4.4e-21 75.4 1.8 2.4e-20 73.0 0.4 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF553 PF04473.12 CQR58050.1 - 3.6e-07 29.8 0.0 1.1e-06 28.2 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like domain Colicin_V PF02674.16 CQR58050.1 - 8e-06 25.9 17.9 0.00055 19.9 17.9 2.9 1 1 0 1 1 1 1 Colicin V production protein Phage_holin_3_3 PF16083.5 CQR58050.1 - 0.022 14.9 2.0 0.4 10.8 2.0 2.6 2 0 0 2 2 2 0 LydA holin phage, holin superfamily III Wzy_C PF04932.15 CQR58050.1 - 0.13 11.9 2.9 12 5.5 2.8 2.3 1 1 0 1 1 1 0 O-Antigen ligase Transglut_core3 PF13471.6 CQR58050.1 - 0.13 12.2 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 Transglutaminase-like superfamily Wzy_C PF04932.15 CQR58051.1 - 0.016 14.8 0.7 0.017 14.8 0.7 1.1 1 0 0 1 1 1 0 O-Antigen ligase DUF3989 PF13150.6 CQR58051.1 - 0.65 9.8 4.5 11 5.8 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3989) MFS_1 PF07690.16 CQR58052.1 - 5.3e-31 107.8 66.7 2e-29 102.7 47.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 CQR58052.1 - 0.67 8.7 10.3 0.02 13.7 3.3 1.9 2 1 0 2 2 2 0 LacY proton/sugar symporter MFS_1_like PF12832.7 CQR58052.1 - 0.71 8.7 28.0 0.081 11.8 11.7 2.2 2 0 0 2 2 2 0 MFS_1 like family Toprim PF01751.22 CQR58053.1 - 0.016 15.4 0.0 0.066 13.4 0.0 1.8 1 1 0 1 1 1 0 Toprim domain Toprim_2 PF13155.6 CQR58053.1 - 0.033 14.6 0.0 0.045 14.2 0.0 1.4 1 1 0 1 1 1 0 Toprim-like SCO1-SenC PF02630.14 CQR58055.1 - 8.7e-30 103.4 0.0 1.1e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 CQR58055.1 - 5.2e-07 29.6 0.0 8.7e-07 28.9 0.0 1.5 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR58055.1 - 0.00014 21.6 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 CQR58055.1 - 0.00019 21.7 0.0 0.0003 21.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like ATG27 PF09451.10 CQR58055.1 - 0.034 14.0 0.3 0.057 13.3 0.3 1.3 1 0 0 1 1 1 0 Autophagy-related protein 27 TNFR_16_TM PF18422.1 CQR58055.1 - 0.19 11.7 0.2 0.35 10.8 0.2 1.4 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain UbiA PF01040.18 CQR58056.1 - 2.6e-64 216.9 22.1 3.1e-64 216.7 22.1 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family YdjM PF04307.14 CQR58057.1 - 7.6e-24 83.9 13.6 1.1e-23 83.4 13.6 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF5326 PF17260.2 CQR58057.1 - 0.8 9.9 5.8 0.35 11.0 0.9 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5326) DUF5325 PF17259.2 CQR58058.1 - 5.5e-06 26.2 1.6 6.3e-06 26.0 1.6 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5325) DUF3180 PF11377.8 CQR58058.1 - 0.0043 17.2 0.5 0.0045 17.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3180) LapA_dom PF06305.11 CQR58058.1 - 0.015 15.1 3.3 0.019 14.8 3.3 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Phage_holin_3_6 PF07332.11 CQR58058.1 - 0.031 14.3 2.1 0.03 14.4 2.1 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 CQR58058.1 - 0.11 11.2 1.0 0.12 11.1 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) tRNA-synt_1b PF00579.25 CQR58059.1 - 4.7e-80 269.0 0.0 5.8e-80 268.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Aldose_epim PF01263.20 CQR58060.1 - 2.6e-32 112.3 0.0 3.1e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 Aldose 1-epimerase SASP PF00269.20 CQR58061.1 - 4e-25 87.6 0.0 4.9e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 Small, acid-soluble spore proteins, alpha/beta type Tachykinin PF02202.16 CQR58062.1 - 0.12 12.3 0.3 0.29 11.1 0.3 1.7 1 0 0 1 1 1 0 Tachykinin family Peptidase_M3 PF01432.20 CQR58063.1 - 6.9e-23 81.6 0.1 3.4e-22 79.3 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.10 CQR58063.1 - 6.2e-10 39.2 0.0 2.2e-09 37.4 0.0 1.9 1 0 0 1 1 1 1 Oligopeptidase F YycC PF14174.6 CQR58064.1 - 2.2e-28 97.8 5.4 2.6e-28 97.6 5.4 1.1 1 0 0 1 1 1 1 YycC-like protein HTH_3 PF01381.22 CQR58064.1 - 0.075 13.1 0.2 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix Foamy_virus_ENV PF03408.14 CQR58065.1 - 0.071 10.9 0.0 0.081 10.8 0.0 1.0 1 0 0 1 1 1 0 Foamy virus envelope protein DUF2225 PF09986.9 CQR58066.1 - 1.3e-56 191.8 1.0 1.4e-56 191.6 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_12 PF13424.6 CQR58066.1 - 3.9e-09 36.7 0.4 3.3e-06 27.3 0.5 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR58066.1 - 0.0033 17.5 0.2 2.6 8.5 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 CQR58066.1 - 0.014 15.3 0.1 0.051 13.5 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 CQR58066.1 - 0.05 13.7 2.7 4 7.8 0.0 3.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 CQR58066.1 - 0.05 14.2 0.3 11 7.0 0.0 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58066.1 - 0.34 10.8 1.6 24 5.0 0.0 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat Bac_globin PF01152.21 CQR58067.1 - 2.4e-31 108.4 0.0 3e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial-like globin Gate PF07670.14 CQR58069.1 - 2.8e-08 34.0 14.6 0.00031 21.0 0.7 3.3 3 1 0 3 3 3 2 Nucleoside recognition LapA_dom PF06305.11 CQR58069.1 - 2.3 8.1 0.0 2.3 8.1 0.0 4.0 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain NAD_kinase PF01513.21 CQR58070.1 - 8.3e-21 74.4 0.0 1e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 CQR58070.1 - 0.022 14.4 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Cu_amine_oxidN1 PF07833.11 CQR58071.1 - 2.7e-27 95.1 0.2 8.1e-27 93.6 0.1 1.9 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain DUF4440 PF14534.6 CQR58071.1 - 0.02 15.3 0.0 0.88 10.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) Med25_VWA PF11265.8 CQR58071.1 - 0.029 14.2 0.1 2 8.2 0.0 2.2 1 1 1 2 2 2 0 Mediator complex subunit 25 von Willebrand factor type A DUF2574 PF10836.8 CQR58071.1 - 0.12 12.2 0.9 0.22 11.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2574) DIM PF08194.12 CQR58071.1 - 0.25 11.6 0.3 0.54 10.5 0.3 1.5 1 0 0 1 1 1 0 DIM protein Baculo_p48 PF04878.13 CQR58071.1 - 0.33 9.8 1.1 0.64 8.9 0.2 1.8 2 0 0 2 2 2 0 Baculovirus P48 protein Peptidase_S41 PF03572.18 CQR58072.1 - 1.3e-45 154.9 0.2 2.2e-45 154.2 0.2 1.4 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.6 CQR58072.1 - 1.3e-14 54.3 0.4 3.9e-14 52.7 0.4 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 CQR58072.1 - 3.1e-12 46.1 0.2 9.9e-12 44.5 0.1 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 CQR58072.1 - 1.6e-10 41.2 0.3 4.8e-10 39.7 0.1 2.0 2 0 0 2 2 2 1 PDZ domain Cu_amine_oxidN1 PF07833.11 CQR58072.1 - 1.3e-05 25.6 0.0 6.2e-05 23.4 0.0 2.1 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain Tricorn_PDZ PF14685.6 CQR58072.1 - 0.00013 21.9 0.3 0.00049 20.0 0.1 2.1 2 0 0 2 2 2 1 Tricorn protease PDZ domain DUF3394 PF11874.8 CQR58072.1 - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) MFS_1 PF07690.16 CQR58073.1 - 4.8e-45 154.0 56.3 5.7e-44 150.5 46.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 CQR58073.1 - 0.00088 17.8 3.8 0.00088 17.8 3.8 2.8 2 1 1 3 3 3 2 Transmembrane secretion effector DUF751 PF05421.11 CQR58073.1 - 0.034 14.9 1.0 0.034 14.9 1.0 6.0 6 2 1 7 7 7 0 Protein of unknown function (DUF751) DUF697 PF05128.12 CQR58073.1 - 0.55 9.9 4.4 0.36 10.5 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF697) Pyr_redox_2 PF07992.14 CQR58074.1 - 6.2e-22 78.2 0.0 4.9e-21 75.2 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR58074.1 - 1.1e-10 41.2 0.0 1e-05 25.0 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 CQR58074.1 - 1.1e-09 38.0 0.5 4.3e-06 26.1 0.0 2.9 3 1 0 3 3 3 2 FAD binding domain GIDA PF01134.22 CQR58074.1 - 4.4e-08 32.6 0.8 0.0069 15.5 0.1 3.1 2 1 1 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 CQR58074.1 - 5.3e-07 28.7 0.0 5.4e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 CQR58074.1 - 5.9e-07 29.4 0.3 0.00015 21.4 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 CQR58074.1 - 1.7e-05 24.9 0.2 0.067 13.2 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 CQR58074.1 - 0.00036 20.7 0.0 0.00086 19.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 CQR58074.1 - 0.0032 16.6 0.1 0.23 10.5 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 CQR58074.1 - 0.0037 16.6 0.1 0.01 15.1 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 CQR58074.1 - 0.029 13.7 0.1 0.052 12.9 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.17 CQR58074.1 - 0.045 13.0 0.0 0.1 11.8 0.0 1.6 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 CQR58074.1 - 0.13 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 CQR58074.1 - 0.15 11.3 0.0 0.39 9.9 0.0 1.6 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Thioredoxin PF00085.20 CQR58075.1 - 5e-25 87.5 0.1 5.4e-25 87.4 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 CQR58075.1 - 7.7e-10 39.0 0.1 1e-08 35.4 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.10 CQR58075.1 - 3.8e-07 29.9 0.0 4.3e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_9 PF14595.6 CQR58075.1 - 8.7e-07 28.8 0.0 9.4e-07 28.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 CQR58075.1 - 1.3e-05 25.6 0.1 4.7e-05 23.8 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 CQR58075.1 - 1.5e-05 24.9 0.0 1.7e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 CQR58075.1 - 0.029 14.4 0.1 0.042 13.9 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin domain DUF953 PF06110.11 CQR58075.1 - 0.034 13.8 0.4 0.042 13.5 0.4 1.4 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) OST3_OST6 PF04756.13 CQR58075.1 - 0.081 12.3 0.0 0.087 12.2 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_7 PF13899.6 CQR58075.1 - 0.1 12.8 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Glutaredoxin PF00462.24 CQR58075.1 - 0.1 12.8 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin HATPase_c PF02518.26 CQR58076.1 - 6.5e-22 78.2 0.0 1.1e-21 77.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58076.1 - 1.7e-12 47.2 0.0 1e-11 44.6 0.0 2.3 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR58076.1 - 4.2e-08 33.5 1.6 5.9e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.6 CQR58076.1 - 1.5e-05 25.0 0.0 2.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR58076.1 - 7e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR58076.1 - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain Response_reg PF00072.24 CQR58077.1 - 2.7e-29 101.6 0.1 3.9e-29 101.1 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58077.1 - 2.1e-22 79.0 0.0 5.2e-22 77.7 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR58077.1 - 7.4e-07 29.4 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain GerE PF00196.19 CQR58077.1 - 0.13 11.9 0.9 17 5.0 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family DJ-1_PfpI PF01965.24 CQR58078.1 - 5.5e-12 45.8 0.1 2.6e-11 43.6 0.1 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family DUF2306 PF10067.9 CQR58079.1 - 2.8e-37 128.2 14.4 2.8e-37 128.2 14.4 1.4 2 0 0 2 2 2 1 Predicted membrane protein (DUF2306) DUF420 PF04238.12 CQR58079.1 - 0.00012 22.4 13.2 0.017 15.4 4.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF420) Herpes_US9 PF06072.11 CQR58079.1 - 0.083 12.8 5.7 0.49 10.3 0.9 2.9 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 HXXEE PF13787.6 CQR58079.1 - 0.51 11.2 14.2 2.7 8.8 14.2 2.3 1 1 0 1 1 1 0 Protein of unknown function with HXXEE motif DUF1027 PF06265.11 CQR58080.1 - 2.9e-36 123.3 0.3 4.2e-36 122.8 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1027) RR_TM4-6 PF06459.12 CQR58080.1 - 3.4 7.4 6.1 4.3 7.1 6.1 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 LIAS_N PF16881.5 CQR58081.1 - 1.7e-11 44.5 0.1 4.9e-11 43.0 0.1 1.8 2 0 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family Radical_SAM PF04055.21 CQR58081.1 - 3.3e-11 43.9 0.2 6.1e-11 43.0 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF669 PF05037.13 CQR58081.1 - 0.11 12.6 0.1 0.29 11.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF669) Peptidase_M23 PF01551.22 CQR58082.1 - 1.8e-18 66.5 0.0 2.9e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M23 FtsX PF02687.21 CQR58083.1 - 1.4e-16 60.7 19.4 7.3e-09 36.0 0.2 4.7 5 0 0 5 5 5 2 FtsX-like permease family Molydop_binding PF01568.21 CQR58083.1 - 0.013 15.5 0.0 11 6.1 0.0 3.0 3 0 0 3 3 3 0 Molydopterin dinucleotide binding domain ABC_tran PF00005.27 CQR58084.1 - 3.3e-34 118.3 0.0 4.6e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR58084.1 - 5.3e-07 29.3 0.1 0.0026 17.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR58084.1 - 4.5e-06 26.7 0.1 0.00081 19.3 0.3 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR58084.1 - 5e-06 26.5 0.1 1.1e-05 25.5 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR58084.1 - 8e-05 22.3 0.2 0.00018 21.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR58084.1 - 0.00061 19.6 0.4 0.023 14.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 CQR58084.1 - 0.0028 18.0 0.0 0.0033 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 CQR58084.1 - 0.0028 18.2 0.1 0.0038 17.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR58084.1 - 0.0052 17.1 0.1 0.0071 16.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 CQR58084.1 - 0.0076 16.3 0.1 0.023 14.7 0.1 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_28 PF13521.6 CQR58084.1 - 0.0087 16.3 0.1 0.058 13.6 0.1 2.1 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 CQR58084.1 - 0.01 14.6 0.2 4.5 6.0 0.1 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_11 PF13086.6 CQR58084.1 - 0.013 15.3 0.0 0.047 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CQR58084.1 - 0.013 15.3 0.0 0.037 13.8 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 CQR58084.1 - 0.017 14.7 0.5 0.18 11.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 CQR58084.1 - 0.017 15.0 0.1 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 CQR58084.1 - 0.025 15.1 0.0 0.044 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 CQR58084.1 - 0.033 12.9 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein T2SSE PF00437.20 CQR58084.1 - 0.043 12.9 0.2 0.076 12.1 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 CQR58084.1 - 0.05 13.3 0.4 0.74 9.5 0.4 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.6 CQR58084.1 - 0.062 11.9 0.0 2.3 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 CQR58084.1 - 0.082 12.5 0.3 0.18 11.3 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 CQR58084.1 - 0.084 12.9 1.2 0.13 12.3 0.4 1.7 2 0 0 2 2 1 0 Dynamin family FtsK_SpoIIIE PF01580.18 CQR58084.1 - 0.099 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATPase_2 PF01637.18 CQR58084.1 - 0.099 12.5 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 CQR58084.1 - 0.12 12.3 0.1 0.3 11.0 0.1 1.7 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 CQR58084.1 - 0.13 12.3 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR58084.1 - 0.14 12.4 0.0 0.27 11.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_27 PF13514.6 CQR58084.1 - 0.15 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TetR_N PF00440.23 CQR58086.1 - 1.1e-09 37.9 0.0 1.9e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 CQR58086.1 - 0.046 13.8 0.1 0.098 12.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase TetR_C_17 PF17922.1 CQR58086.1 - 0.052 13.6 0.0 0.09 12.9 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_24 PF13412.6 CQR58086.1 - 0.13 11.8 0.0 0.5 10.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sialidase PF02973.16 CQR58086.1 - 0.18 11.3 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 Sialidase, N-terminal domain Alpha-amylase PF00128.24 CQR58087.1 - 2.4e-76 257.5 0.0 3.9e-76 256.8 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 CQR58087.1 - 1.3e-17 64.1 0.0 2.6e-17 63.1 0.0 1.6 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain Malt_amylase_C PF16657.5 CQR58087.1 - 7.6e-08 32.4 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Glyco_hydro_66 PF13199.6 CQR58087.1 - 0.0016 17.1 0.0 0.0025 16.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 66 Peripla_BP_3 PF13377.6 CQR58088.1 - 3.2e-28 99.2 0.0 6.6e-28 98.1 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein-like domain LacI PF00356.21 CQR58088.1 - 6.1e-19 67.5 0.5 1.1e-18 66.7 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_1 PF00532.21 CQR58088.1 - 5.2e-17 62.2 0.0 8.1e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 CQR58088.1 - 1.1e-05 25.2 0.0 3.7e-05 23.4 0.0 1.8 1 1 1 2 2 2 1 Periplasmic binding protein domain Cas_St_Csn2 PF16813.5 CQR58088.1 - 0.0015 17.7 0.5 0.0022 17.2 0.5 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Csn2 subfamily St HTH_7 PF02796.15 CQR58088.1 - 0.006 16.6 1.1 0.055 13.5 0.1 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 CQR58088.1 - 0.024 14.4 0.2 11 5.9 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain SpoIIID PF12116.8 CQR58088.1 - 0.04 14.0 0.2 0.068 13.3 0.2 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D UPF0154 PF03672.13 CQR58088.1 - 0.042 13.9 0.0 0.093 12.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) HTH_3 PF01381.22 CQR58088.1 - 0.092 12.8 0.1 0.35 11.0 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix Mer2 PF09074.10 CQR58088.1 - 0.13 12.1 0.2 0.2 11.4 0.2 1.2 1 0 0 1 1 1 0 Mer2 HTH_23 PF13384.6 CQR58088.1 - 0.13 12.1 0.1 3.6 7.5 0.0 2.8 3 0 0 3 3 3 0 Homeodomain-like domain MarR PF01047.22 CQR58088.1 - 0.14 12.1 0.9 2.9 7.9 0.1 2.4 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.12 CQR58088.1 - 0.16 11.8 0.0 0.49 10.2 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain Abhydrolase_1 PF00561.20 CQR58089.1 - 7.1e-17 61.9 0.0 4.4e-10 39.6 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 CQR58089.1 - 3.9e-15 55.8 0.1 1.5e-06 27.7 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 CQR58089.1 - 3e-11 44.4 0.1 2.8e-10 41.2 0.1 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 CQR58089.1 - 6.5e-07 29.2 0.0 1.3e-06 28.3 0.0 1.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 CQR58089.1 - 0.00044 20.3 0.0 0.00089 19.3 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Esterase_phd PF10503.9 CQR58089.1 - 0.00099 18.7 0.0 0.0023 17.4 0.0 1.5 1 1 0 1 1 1 1 Esterase PHB depolymerase Palm_thioest PF02089.15 CQR58089.1 - 0.007 16.2 0.0 0.0098 15.8 0.0 1.2 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Ser_hydrolase PF06821.13 CQR58089.1 - 0.0091 15.9 0.0 0.041 13.8 0.0 1.8 1 1 0 1 1 1 1 Serine hydrolase BAAT_C PF08840.11 CQR58089.1 - 0.024 14.5 0.0 0.39 10.6 0.0 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.16 CQR58089.1 - 0.039 13.7 0.1 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DUF4099 PF13351.6 CQR58090.1 - 4e-07 30.2 3.1 1.5e+02 2.7 0.0 9.3 1 1 12 13 13 13 0 Protein of unknown function (DUF4099) DUF5518 PF17647.1 CQR58090.1 - 2.4e-05 24.4 88.3 2.5 8.3 11.0 6.4 1 1 8 9 9 9 9 Family of unknown function (DUF5518) HTH_26 PF13443.6 CQR58090.1 - 0.01 16.3 13.7 3.1e+02 1.9 0.0 10.0 1 1 11 12 12 12 0 Cro/C1-type HTH DNA-binding domain Glycos_transf_2 PF00535.26 CQR58091.1 - 3.5e-21 75.8 0.0 6.3e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_2 PF07719.17 CQR58091.1 - 6.3e-13 47.8 12.9 0.064 13.4 0.2 7.6 7 0 0 7 7 7 3 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.6 CQR58091.1 - 8.6e-12 45.4 0.1 2.1e-11 44.2 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_7 PF13176.6 CQR58091.1 - 2.2e-10 39.8 5.7 0.0075 16.2 0.1 5.7 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 CQR58091.1 - 5.6e-09 36.4 18.9 4.1e-05 24.0 0.1 6.1 6 1 1 7 7 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 CQR58091.1 - 1.7e-08 35.0 36.8 4.6e-06 27.2 1.8 6.8 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_14 PF13428.6 CQR58091.1 - 3.6e-08 33.6 21.3 4.6 8.3 0.0 8.1 6 1 1 7 7 7 2 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58091.1 - 8.1e-07 28.6 3.4 0.23 11.4 0.0 5.7 6 0 0 6 6 6 1 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR58091.1 - 1e-06 28.9 1.3 0.025 14.8 0.0 4.1 3 1 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 Glyco_tranf_2_2 PF10111.9 CQR58091.1 - 2.9e-05 23.7 0.0 5.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_20 PF14561.6 CQR58091.1 - 6.6e-05 23.2 2.9 0.01 16.2 0.0 3.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 CQR58091.1 - 0.0014 18.9 5.6 0.014 15.8 0.2 4.1 5 0 0 5 5 3 1 Tetratricopeptide repeat PPR PF01535.20 CQR58091.1 - 0.0022 18.1 0.6 2.6 8.5 0.0 4.0 4 0 0 4 4 4 1 PPR repeat PknG_TPR PF16918.5 CQR58091.1 - 0.0029 16.4 0.4 0.0083 14.9 0.4 1.7 1 0 0 1 1 1 1 Protein kinase G tetratricopeptide repeat TPR_8 PF13181.6 CQR58091.1 - 0.005 16.9 0.9 40 4.8 0.0 5.5 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 CQR58091.1 - 0.01 16.1 20.1 0.22 11.8 0.2 5.9 5 1 1 6 6 6 0 Tetratricopeptide repeat Glyco_tranf_2_3 PF13641.6 CQR58091.1 - 0.011 15.7 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family 2 TPR_4 PF07721.14 CQR58091.1 - 0.35 11.6 19.3 36 5.4 0.0 6.6 6 1 0 6 6 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 CQR58091.1 - 0.46 11.2 13.6 9 7.2 0.0 6.2 6 1 0 6 6 6 0 Tetratricopeptide repeat TPR_3 PF07720.12 CQR58091.1 - 0.73 9.9 3.0 38 4.4 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Glycos_transf_2 PF00535.26 CQR58092.1 - 2.3e-24 86.1 0.0 3.6e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_2 PF07719.17 CQR58092.1 - 1.5e-12 46.6 12.7 0.028 14.5 0.0 5.9 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58092.1 - 8.4e-11 41.2 6.2 0.01 15.6 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.6 CQR58092.1 - 1.6e-08 34.9 0.0 4.8e-08 33.4 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_9 PF13371.6 CQR58092.1 - 1.1e-07 31.9 1.6 0.0011 19.1 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 CQR58092.1 - 1.2e-07 32.1 0.2 0.0042 17.6 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 CQR58092.1 - 5.5e-07 29.2 0.0 0.051 13.6 0.0 4.6 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 CQR58092.1 - 4.6e-06 27.0 8.3 1.3 10.1 0.2 5.8 3 1 3 6 6 5 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR58092.1 - 0.00011 22.2 2.9 2.6 8.5 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_17 PF13431.6 CQR58092.1 - 0.00099 19.3 0.2 8.8 7.0 0.0 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat Glyco_tranf_2_3 PF13641.6 CQR58092.1 - 0.0019 18.1 0.0 0.0034 17.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_12 PF13424.6 CQR58092.1 - 0.004 17.4 10.9 2.3 8.6 4.2 4.4 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 CQR58092.1 - 0.034 13.8 0.5 3 7.6 0.0 3.6 4 0 0 4 4 4 0 TPR repeat TPR_15 PF13429.6 CQR58092.1 - 0.044 13.0 0.3 8.8 5.4 0.0 2.9 2 1 0 3 3 3 0 Tetratricopeptide repeat TPR_20 PF14561.6 CQR58092.1 - 0.08 13.3 1.4 0.22 11.9 0.0 2.4 3 0 0 3 3 2 0 Tetratricopeptide repeat DUF3856 PF12968.7 CQR58092.1 - 0.12 12.4 0.0 2.3 8.3 0.0 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF3856) TPR_16 PF13432.6 CQR58092.1 - 0.18 12.5 13.4 0.58 10.9 0.0 4.5 4 1 0 5 5 3 0 Tetratricopeptide repeat Glycos_transf_2 PF00535.26 CQR58093.1 - 2.3e-14 53.6 0.0 4e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_2 PF07719.17 CQR58093.1 - 1.3e-11 43.6 3.1 0.0023 17.9 0.1 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58093.1 - 3.8e-10 39.1 0.7 0.0086 15.9 0.0 3.9 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 CQR58093.1 - 2.6e-08 33.5 0.3 0.017 15.3 0.0 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 CQR58093.1 - 1.7e-05 25.3 4.5 0.00017 22.2 0.9 5.7 4 1 1 5 5 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 CQR58093.1 - 2.1e-05 24.7 4.3 0.42 10.9 0.1 4.1 3 0 0 3 3 3 2 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.6 CQR58093.1 - 2.7e-05 24.6 0.0 7.3e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 TPR_14 PF13428.6 CQR58093.1 - 2.9e-05 24.5 29.0 0.005 17.6 0.1 7.1 7 1 1 8 8 7 3 Tetratricopeptide repeat TPR_19 PF14559.6 CQR58093.1 - 6.4e-05 23.4 15.0 0.018 15.6 0.3 5.3 4 1 2 6 6 6 3 Tetratricopeptide repeat TPR_11 PF13414.6 CQR58093.1 - 0.0003 20.4 4.9 2.2 8.0 0.0 3.8 2 1 1 3 3 3 2 TPR repeat TPR_17 PF13431.6 CQR58093.1 - 0.0027 18.0 0.9 7.8 7.1 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR58093.1 - 0.003 17.7 4.2 2.3 8.5 0.3 4.2 2 1 2 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.6 CQR58093.1 - 0.015 15.6 0.1 0.053 13.9 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 CQR58093.1 - 0.089 12.9 4.7 2 8.6 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 CQR58093.1 - 1.4 9.7 5.9 19 6.2 0.1 4.1 4 0 0 4 4 3 0 Tetratricopeptide repeat Glycos_transf_2 PF00535.26 CQR58094.1 - 2.6e-11 43.6 0.1 5.2e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 CQR58094.1 - 2.9e-10 40.5 0.1 6.6e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 NIF PF03031.18 CQR58095.1 - 0.17 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase Glycos_transf_2 PF00535.26 CQR58096.1 - 0.00012 22.0 0.0 0.00083 19.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 CQR58096.1 - 0.00019 20.9 0.0 0.00062 19.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 CQR58096.1 - 0.001 19.0 0.1 0.0029 17.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 DUF2190 PF09956.9 CQR58097.1 - 0.013 16.0 1.1 0.16 12.5 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) Spore_YunB PF09560.10 CQR58098.1 - 1.4e-26 92.3 0.8 1.4e-26 92.3 0.8 1.5 2 0 0 2 2 2 1 Sporulation protein YunB (Spo_YunB) DUF4131 PF13567.6 CQR58098.1 - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PBP1_TM PF14812.6 CQR58098.1 - 0.2 12.0 0.0 0.41 11.0 0.0 1.5 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal SNARE_assoc PF09335.11 CQR58099.1 - 5.6e-23 81.7 7.3 8.8e-23 81.1 5.5 2.0 2 0 0 2 2 2 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.11 CQR58099.1 - 0.028 15.0 0.4 0.028 15.0 0.4 2.1 2 1 0 2 2 2 0 Putative small multi-drug export protein DUF1295 PF06966.12 CQR58099.1 - 0.4 10.2 8.6 0.018 14.5 3.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) Oleosin PF01277.17 CQR58099.1 - 8.8 6.1 11.0 0.96 9.2 5.9 2.0 2 0 0 2 2 2 0 Oleosin OpuAC PF04069.12 CQR58100.1 - 2.5e-73 246.8 6.3 2.9e-73 246.6 6.3 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 CQR58101.1 - 3.9e-23 82.1 9.7 3.9e-23 82.1 9.7 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR58102.1 - 3.8e-33 114.9 0.0 7.1e-33 114.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter CBS PF00571.28 CQR58102.1 - 2.3e-17 63.1 0.9 3.6e-08 33.7 0.3 2.8 2 0 0 2 2 2 2 CBS domain AAA_22 PF13401.6 CQR58102.1 - 1.2e-07 32.0 0.4 0.00024 21.4 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 CQR58102.1 - 5.5e-06 26.9 0.2 4.7e-05 23.8 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 CQR58102.1 - 0.00045 19.1 0.1 0.62 8.8 0.0 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 CQR58102.1 - 0.00085 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR58102.1 - 0.0014 18.5 0.1 1.1 9.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ATPase_2 PF01637.18 CQR58102.1 - 0.0016 18.4 0.7 0.12 12.2 0.1 2.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 CQR58102.1 - 0.0046 16.9 0.0 0.0097 15.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 CQR58102.1 - 0.0049 16.6 0.0 0.022 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 CQR58102.1 - 0.0077 16.1 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase Adeno_IVa2 PF02456.15 CQR58102.1 - 0.011 14.5 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_33 PF13671.6 CQR58102.1 - 0.012 15.7 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR58102.1 - 0.014 16.0 0.0 0.031 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 CQR58102.1 - 0.04 13.2 0.0 0.084 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin CbiA PF01656.23 CQR58102.1 - 0.049 13.7 0.0 0.078 13.0 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SbcCD_C PF13558.6 CQR58102.1 - 0.062 13.5 0.2 0.17 12.1 0.2 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 CQR58102.1 - 0.077 13.5 0.0 0.2 12.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.17 CQR58102.1 - 0.091 12.5 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 CQR58102.1 - 0.12 12.3 0.1 0.65 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 CQR58102.1 - 0.14 11.2 0.0 0.19 10.9 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit DUF87 PF01935.17 CQR58102.1 - 0.15 12.1 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain DUF2075 PF09848.9 CQR58102.1 - 0.25 10.5 0.8 8.1 5.6 0.2 2.8 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) SMC_N PF02463.19 CQR58102.1 - 0.41 10.1 1.3 8 5.8 1.3 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain MarR_2 PF12802.7 CQR58103.1 - 0.01 15.7 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Lyase_aromatic PF00221.19 CQR58103.1 - 0.033 12.8 0.0 0.056 12.1 0.0 1.4 2 0 0 2 2 2 0 Aromatic amino acid lyase MarR PF01047.22 CQR58103.1 - 0.044 13.7 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 CQR58103.1 - 0.057 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3921 PF13060.6 CQR58103.1 - 0.058 13.4 0.0 0.74 9.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3921) TrmB PF01978.19 CQR58103.1 - 0.13 12.1 0.0 0.47 10.4 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB CBM_4_9 PF02018.17 CQR58104.1 - 2.1e-72 241.8 7.5 2.3e-21 76.5 2.8 5.9 5 0 0 5 5 5 5 Carbohydrate binding domain SLH PF00395.20 CQR58104.1 - 6.3e-30 102.9 10.1 9.7e-15 54.3 0.4 4.5 4 0 0 4 4 4 3 S-layer homology domain Glyco_hydro_16 PF00722.21 CQR58104.1 - 1.4e-28 99.5 2.1 3.9e-28 98.1 2.1 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 DUF1533 PF07550.11 CQR58104.1 - 4.7e-15 55.2 0.0 1.8e-14 53.4 0.0 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1533) SKN1 PF03935.15 CQR58104.1 - 1.4e-13 50.1 2.4 6.1e-06 24.9 0.9 2.2 2 0 0 2 2 2 2 Beta-glucan synthesis-associated protein (SKN1) DUF4627 PF15425.6 CQR58104.1 - 0.00021 21.0 6.9 0.059 13.0 0.0 5.0 4 1 1 5 5 5 1 Domain of unknown function (DUF4627) Peripla_BP_3 PF13377.6 CQR58105.1 - 6.9e-41 140.3 0.0 1.2e-40 139.6 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR58105.1 - 3.6e-23 82.4 0.0 5.1e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR58105.1 - 1.7e-17 62.9 1.1 3.1e-17 62.1 1.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR58105.1 - 1.1e-10 41.6 0.0 2.7e-10 40.3 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain HTH_3 PF01381.22 CQR58105.1 - 1.7e-05 24.8 0.1 4.2e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 CQR58105.1 - 0.0011 18.7 0.0 0.0033 17.2 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 CQR58105.1 - 0.0081 15.7 0.0 0.11 12.0 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 CQR58105.1 - 0.016 15.2 0.1 0.11 12.6 0.1 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58105.1 - 0.026 14.6 0.1 1.5 9.0 0.0 3.1 2 1 1 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_29 PF13551.6 CQR58105.1 - 0.026 14.5 0.0 0.48 10.5 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn helix HTH_7 PF02796.15 CQR58105.1 - 0.068 13.2 0.0 0.81 9.8 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 CQR58105.1 - 0.069 12.7 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 CQR58105.1 - 0.07 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.6 CQR58105.1 - 0.1 12.6 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 CQR58105.1 - 0.11 12.7 0.0 1 9.6 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain MarR PF01047.22 CQR58105.1 - 0.15 12.0 0.0 0.5 10.3 0.1 1.8 2 0 0 2 2 1 0 MarR family MerR PF00376.23 CQR58105.1 - 0.18 11.6 0.3 0.68 9.8 0.1 2.0 2 0 0 2 2 2 0 MerR family regulatory protein ACP_syn_III PF08545.10 CQR58106.1 - 2.5e-30 104.1 1.2 5.8e-30 103.0 1.2 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 CQR58106.1 - 2.1e-29 101.6 0.0 7.2e-29 99.8 0.0 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 CQR58106.1 - 2.3e-06 27.1 0.0 5.5e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 CQR58106.1 - 0.0016 18.4 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal FAE1_CUT1_RppA PF08392.12 CQR58106.1 - 0.0018 17.7 0.0 0.0027 17.0 0.0 1.2 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein Chal_sti_synt_N PF00195.19 CQR58106.1 - 0.0052 16.2 0.4 0.012 15.1 0.3 1.7 1 1 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain HTH_18 PF12833.7 CQR58107.1 - 2.5e-20 72.5 0.4 5.7e-20 71.4 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58107.1 - 3.5e-17 62.0 0.6 1.4e-08 34.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Peripla_BP_2 PF01497.18 CQR58107.1 - 4.2e-13 49.4 0.0 6.4e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein AraC_binding PF02311.19 CQR58107.1 - 4.9e-05 23.3 0.0 0.00016 21.6 0.0 1.8 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_Crp_2 PF13545.6 CQR58107.1 - 0.0044 17.0 0.2 0.017 15.1 0.2 2.1 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Cupin_2 PF07883.11 CQR58107.1 - 0.0064 16.2 0.0 0.02 14.6 0.0 1.8 2 0 0 2 2 2 1 Cupin domain Peripla_BP_2 PF01497.18 CQR58108.1 - 1.6e-29 103.2 1.3 1.9e-29 102.9 1.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 CQR58109.1 - 2.6e-81 273.0 42.2 3.1e-81 272.8 42.2 1.0 1 0 0 1 1 1 1 FecCD transport family FecCD PF01032.18 CQR58110.1 - 3.3e-84 282.6 31.9 4.1e-84 282.3 31.9 1.1 1 0 0 1 1 1 1 FecCD transport family Glyco_hydro_88 PF07470.13 CQR58111.1 - 1.3e-104 350.0 0.3 1.4e-104 349.9 0.3 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 BPD_transp_1 PF00528.22 CQR58112.1 - 4.7e-16 59.1 22.7 6.2e-15 55.4 22.7 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58113.1 - 8.7e-18 64.7 14.8 8.7e-18 64.7 14.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR58114.1 - 1.2e-16 61.5 13.1 2.1e-16 60.8 13.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58114.1 - 2.7e-15 57.0 10.7 4.6e-15 56.2 10.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4969 PF16339.5 CQR58114.1 - 0.018 15.4 0.2 0.046 14.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4969) DUF3502 PF12010.8 CQR58114.1 - 0.14 12.8 4.2 0.26 11.9 2.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3502) Mit_KHE1 PF10173.9 CQR58115.1 - 0.15 12.2 3.5 0.15 12.1 3.5 1.0 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related HTH_3 PF01381.22 CQR58117.1 - 1.5e-05 25.0 0.0 4.7e-05 23.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 CQR58117.1 - 0.00096 19.5 0.0 0.0019 18.6 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 CQR58117.1 - 0.00098 19.4 0.0 0.003 17.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain TPR_1 PF00515.28 CQR58117.1 - 0.0035 17.1 0.3 3.6 7.6 0.1 3.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 CQR58117.1 - 0.0053 16.7 0.4 0.43 10.7 0.1 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat HTH_37 PF13744.6 CQR58117.1 - 0.055 13.4 0.7 0.32 11.0 0.1 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain TPR_12 PF13424.6 CQR58117.1 - 0.15 12.3 6.4 35 4.8 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 CQR58117.1 - 5.6 7.3 10.3 17 5.8 0.1 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat SBP_bac_1 PF01547.25 CQR58119.1 - 3.3e-11 43.7 0.6 5e-11 43.1 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58119.1 - 6.4e-10 39.3 0.1 8.9e-10 38.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LPAM_1 PF08139.12 CQR58119.1 - 0.094 13.2 0.2 0.21 12.2 0.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site HTH_18 PF12833.7 CQR58120.1 - 3.4e-18 65.7 0.2 1e-17 64.1 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain dCache_1 PF02743.18 CQR58120.1 - 3.6e-18 66.3 4.3 3.6e-18 66.3 4.3 2.5 3 0 0 3 3 3 1 Cache domain HTH_AraC PF00165.23 CQR58120.1 - 7.2e-15 54.7 0.3 6.3e-09 35.7 0.0 3.0 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR58120.1 - 8.4e-05 22.8 0.0 0.00019 21.7 0.0 1.6 1 0 0 1 1 1 1 GGDEF-like domain Cache_3-Cache_2 PF17201.4 CQR58120.1 - 0.022 14.1 2.4 1.2 8.3 0.0 2.7 2 0 0 2 2 2 0 Cache 3/Cache 2 fusion domain sCache_3_2 PF17203.4 CQR58120.1 - 0.032 14.3 0.0 0.094 12.8 0.0 1.8 1 0 0 1 1 1 0 Single cache domain 3 DUF3153 PF11353.8 CQR58121.1 - 0.0049 16.5 0.1 0.0068 16.0 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3153) IglC PF11550.8 CQR58121.1 - 0.019 14.4 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Intracellular growth locus C protein Cyc-maltodext_N PF09087.11 CQR58121.1 - 0.13 12.5 0.1 3 8.2 0.0 2.6 2 1 1 3 3 3 0 Cyclomaltodextrinase, N-terminal EphA2_TM PF14575.6 CQR58121.1 - 0.13 13.1 0.5 0.79 10.6 0.2 2.1 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain GerA PF03323.13 CQR58122.1 - 2.9e-164 547.0 1.0 3.4e-164 546.8 1.0 1.0 1 0 0 1 1 1 1 Bacillus/Clostridium GerA spore germination protein DUF2002 PF09400.10 CQR58122.1 - 0.17 11.9 0.0 0.41 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2002) Spore_permease PF03845.13 CQR58123.1 - 3.7e-56 190.3 34.1 3.7e-56 190.3 34.1 1.3 2 0 0 2 2 2 1 Spore germination protein Spore_GerAC PF05504.11 CQR58124.1 - 1.4e-26 93.7 1.6 2.7e-26 92.8 1.6 1.5 1 0 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal CDC37_C PF08564.10 CQR58124.1 - 0.00015 21.8 0.1 0.00029 20.9 0.1 1.4 1 0 0 1 1 1 1 Cdc37 C terminal domain Ribosomal_L27_C PF18471.1 CQR58124.1 - 0.025 14.0 1.8 0.032 13.6 0.7 1.6 2 0 0 2 2 2 0 Ribosomal L27 protein C-terminal domain ABC2_membrane PF01061.24 CQR58125.1 - 6.9e-16 58.3 24.5 6.9e-16 58.3 24.5 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR58125.1 - 7.7e-10 38.4 23.3 7.7e-10 38.4 23.3 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein Insulin_TMD PF17870.1 CQR58125.1 - 0.32 11.1 0.0 0.32 11.1 0.0 2.5 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment ABC_tran PF00005.27 CQR58126.1 - 4.3e-32 111.5 0.0 7.5e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58126.1 - 1.3e-15 58.1 0.9 2.6e-11 43.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58126.1 - 1.7e-09 37.5 0.0 5.1e-09 35.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR58126.1 - 6.3e-06 26.7 0.1 1.2e-05 25.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF4162 PF13732.6 CQR58126.1 - 0.00021 21.9 0.1 0.00051 20.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 CQR58126.1 - 0.00064 19.7 0.0 0.0015 18.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_14 PF13173.6 CQR58126.1 - 0.0017 18.4 0.1 0.015 15.3 0.0 2.5 1 1 3 4 4 4 1 AAA domain AAA_22 PF13401.6 CQR58126.1 - 0.0023 18.2 0.9 0.0068 16.7 0.1 2.1 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 CQR58126.1 - 0.0024 17.8 0.0 0.0049 16.8 0.0 1.7 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 CQR58126.1 - 0.0028 17.4 0.2 3.8 7.2 0.0 3.2 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_29 PF13555.6 CQR58126.1 - 0.0033 17.1 0.0 0.0087 15.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 CQR58126.1 - 0.0037 17.4 0.4 0.013 15.6 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR58126.1 - 0.01 15.6 0.7 0.044 13.5 0.2 2.2 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR58126.1 - 0.016 15.7 0.6 0.043 14.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR58126.1 - 0.03 14.4 0.0 0.093 12.8 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 CQR58126.1 - 0.049 14.2 0.4 0.15 12.6 0.0 2.1 2 2 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR58126.1 - 0.054 12.7 0.5 0.13 11.4 0.5 1.9 1 1 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 CQR58126.1 - 0.056 13.8 0.9 0.22 11.9 0.9 2.2 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR58126.1 - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain MeaB PF03308.16 CQR58126.1 - 0.058 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 CQR58126.1 - 0.059 12.7 0.5 0.19 11.0 0.0 2.0 3 0 0 3 3 3 0 Zeta toxin MobB PF03205.14 CQR58126.1 - 0.059 13.3 0.3 0.61 10.0 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 CQR58126.1 - 0.061 13.1 0.1 0.16 11.7 0.0 1.8 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 CQR58126.1 - 0.062 12.9 0.3 1.3 8.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 CQR58126.1 - 0.11 12.1 0.2 0.14 11.8 0.2 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 CQR58126.1 - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 CQR58126.1 - 0.59 10.0 2.9 1.1 9.1 0.1 2.4 2 1 0 2 2 2 0 NACHT domain HTH_5 PF01022.20 CQR58127.1 - 2.8e-06 27.1 0.1 1.1e-05 25.1 0.1 2.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR58127.1 - 0.00021 21.3 0.2 0.0011 19.0 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR58127.1 - 0.0016 18.3 0.1 0.036 14.0 0.1 2.7 2 0 0 2 2 2 1 MarR family DUF4936 PF16290.5 CQR58127.1 - 0.008 16.8 0.4 0.041 14.6 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4936) HTH_Crp_2 PF13545.6 CQR58127.1 - 0.058 13.4 0.1 0.25 11.3 0.1 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Biliv-reduc_cat PF09166.10 CQR58127.1 - 0.085 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Biliverdin reductase, catalytic HTH_24 PF13412.6 CQR58127.1 - 0.21 11.2 1.5 1.3 8.6 0.1 3.0 3 1 0 3 3 3 0 Winged helix-turn-helix DNA-binding Glycos_transf_1 PF00534.20 CQR58128.1 - 8.3e-31 106.8 0.0 6.6e-29 100.6 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR58128.1 - 6e-26 91.5 0.0 8.2e-24 84.5 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 CQR58128.1 - 1.9e-09 37.8 0.1 3.6e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 CQR58128.1 - 0.0011 18.9 0.1 0.0021 18.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like UDPGT PF00201.18 CQR58129.1 - 6.1e-17 61.6 0.0 1e-14 54.3 0.0 2.1 2 0 0 2 2 2 2 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_tran_28_C PF04101.16 CQR58129.1 - 6.8e-11 42.4 0.0 1.5e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 CQR58129.1 - 1.6e-05 24.4 0.0 0.011 15.0 0.0 2.4 2 1 0 2 2 2 2 Glycosyl transferase family 1 Glyco_transf_28 PF03033.20 CQR58129.1 - 0.18 11.8 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain UDPGT PF00201.18 CQR58130.1 - 1e-13 50.9 0.0 5.2e-13 48.6 0.0 2.0 3 0 0 3 3 3 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_tran_28_C PF04101.16 CQR58130.1 - 6.6e-08 32.7 0.0 1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain AMP-binding PF00501.28 CQR58131.1 - 1.1e-193 643.6 0.0 1.3e-98 330.4 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme Condensation PF00668.20 CQR58131.1 - 6e-143 476.8 7.6 1.1e-116 390.2 1.4 4.2 3 1 0 3 3 3 3 Condensation domain PP-binding PF00550.25 CQR58131.1 - 2.7e-23 82.1 0.3 4.1e-13 49.5 0.1 2.8 2 0 0 2 2 2 2 Phosphopantetheine attachment site AMP-binding_C PF13193.6 CQR58131.1 - 1.7e-14 54.5 0.0 5.8e-07 30.4 0.0 2.7 2 0 0 2 2 2 2 AMP-binding enzyme C-terminal domain AATase PF07247.12 CQR58131.1 - 0.0001 21.0 0.1 0.024 13.2 0.0 2.6 2 0 0 2 2 2 2 Alcohol acetyltransferase Pilus_CpaD PF09476.10 CQR58131.1 - 0.03 14.0 0.3 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) Transferase PF02458.15 CQR58131.1 - 0.049 12.3 0.0 0.57 8.8 0.0 2.1 2 0 0 2 2 2 0 Transferase family Condensation PF00668.20 CQR58132.1 - 0 1295.4 11.5 1.6e-118 396.3 0.0 4.2 4 0 0 4 4 4 4 Condensation domain AMP-binding PF00501.28 CQR58132.1 - 4.5e-97 325.3 0.0 1.6e-96 323.5 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme ketoacyl-synt PF00109.26 CQR58132.1 - 2.8e-71 240.1 0.0 4.6e-71 239.4 0.0 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Aminotran_3 PF00202.21 CQR58132.1 - 2e-53 181.5 0.0 3.1e-53 180.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III PP-binding PF00550.25 CQR58132.1 - 5.1e-41 138.9 1.2 2.4e-14 53.4 0.2 3.7 3 0 0 3 3 3 3 Phosphopantetheine attachment site Ketoacyl-synt_C PF02801.22 CQR58132.1 - 2.1e-40 137.4 0.1 6.2e-40 135.9 0.1 1.9 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain AMP-binding_C PF13193.6 CQR58132.1 - 3.2e-13 50.4 0.0 1.7e-07 32.1 0.0 2.7 2 0 0 2 2 2 2 AMP-binding enzyme C-terminal domain KAsynt_C_assoc PF16197.5 CQR58132.1 - 4.6e-13 49.6 0.0 1.3e-12 48.2 0.0 1.8 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension Thiolase_N PF00108.23 CQR58132.1 - 2e-05 24.1 0.4 4.6e-05 22.9 0.4 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Transferase PF02458.15 CQR58132.1 - 0.0078 14.9 0.0 1.1 7.8 0.0 3.2 3 0 0 3 3 3 1 Transferase family AMP-binding PF00501.28 CQR58133.1 - 8.8e-73 245.3 0.0 1.2e-72 244.8 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme PP-binding PF00550.25 CQR58133.1 - 1.7e-10 41.1 0.0 4.6e-10 39.7 0.0 1.8 1 0 0 1 1 1 1 Phosphopantetheine attachment site Condensation PF00668.20 CQR58133.1 - 4.1e-05 22.5 0.0 0.0061 15.3 0.0 2.2 2 0 0 2 2 2 2 Condensation domain AAA_21 PF13304.6 CQR58134.1 - 4.6e-17 62.8 0.4 3.6e-09 36.9 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 CQR58134.1 - 5e-16 59.4 0.1 2e-07 31.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 CQR58134.1 - 1.9e-10 40.5 0.1 0.00017 21.1 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR58134.1 - 2.3e-09 38.0 0.1 3e-09 37.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR58134.1 - 5.4e-07 29.3 0.0 1.2e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 CQR58134.1 - 2.1e-06 28.3 0.0 1.3e-05 25.7 0.0 2.1 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 CQR58134.1 - 0.001 19.3 0.0 0.0022 18.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 CQR58134.1 - 0.0025 17.3 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA PF00004.29 CQR58134.1 - 0.0027 18.2 0.1 0.018 15.5 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 CQR58134.1 - 0.0028 17.6 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 CQR58134.1 - 0.013 14.3 0.0 0.018 13.8 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR58134.1 - 0.014 15.8 0.1 0.022 15.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 CQR58134.1 - 0.024 14.3 0.2 0.037 13.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR58134.1 - 0.036 14.2 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 CQR58134.1 - 0.054 13.5 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 CQR58134.1 - 0.062 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 CQR58134.1 - 0.065 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 CQR58134.1 - 0.13 11.9 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 CQR58134.1 - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2813 PF11398.8 CQR58134.1 - 0.14 11.4 0.0 0.3 10.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) RNA_helicase PF00910.22 CQR58134.1 - 0.15 12.4 0.0 0.39 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PIF1 PF05970.14 CQR58134.1 - 0.18 10.9 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_18 PF13238.6 CQR58134.1 - 0.21 12.1 0.0 1 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR58134.1 - 0.22 11.6 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.6 CQR58134.1 - 0.24 10.0 0.1 0.99 8.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF5643 PF18705.1 CQR58135.1 - 3.4e-22 78.6 0.6 7.9e-22 77.4 0.6 1.7 1 0 0 1 1 1 1 Family of unknown function (DUF5643) DUF4179 PF13786.6 CQR58135.1 - 1e-10 41.9 0.3 2.5e-10 40.7 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4179) Sigma70_r2 PF04542.14 CQR58136.1 - 6.1e-15 54.7 1.7 1.2e-14 53.8 0.5 2.1 2 1 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR58136.1 - 1.9e-08 33.8 0.3 5e-08 32.5 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR58136.1 - 9.1e-06 25.1 0.7 9.1e-06 25.1 0.7 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_38 PF13936.6 CQR58136.1 - 0.002 17.9 0.0 0.0051 16.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 CQR58136.1 - 0.0053 16.7 1.0 0.03 14.2 1.0 2.0 1 1 0 1 1 1 1 ECF sigma factor HTH_16 PF12645.7 CQR58136.1 - 0.018 15.1 0.6 0.061 13.4 0.6 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR58136.1 - 0.025 14.4 0.0 0.065 13.1 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 CQR58136.1 - 0.07 12.9 0.3 0.3 10.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain AA_permease_2 PF13520.6 CQR58137.1 - 3.5e-31 108.5 44.0 4.2e-31 108.2 44.0 1.1 1 0 0 1 1 1 1 Amino acid permease FtsX PF02687.21 CQR58139.1 - 4.7e-07 30.2 7.0 4.7e-07 30.2 7.0 5.8 5 2 0 5 5 5 2 FtsX-like permease family GH97_N PF14508.6 CQR58139.1 - 0.086 12.3 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 N-terminal DUF423 PF04241.15 CQR58139.1 - 0.13 12.5 4.3 0.37 11.0 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF423) ABC_tran PF00005.27 CQR58140.1 - 2.1e-32 112.5 0.0 2.8e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58140.1 - 1.6e-09 38.0 0.9 0.00013 21.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR58140.1 - 0.00044 20.2 0.0 0.00078 19.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase RNA12 PF10443.9 CQR58140.1 - 0.0013 17.6 0.0 0.0019 17.0 0.0 1.2 1 0 0 1 1 1 1 RNA12 protein SMC_N PF02463.19 CQR58140.1 - 0.0013 18.2 0.0 0.017 14.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR58140.1 - 0.0032 17.2 0.3 0.0063 16.2 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR58140.1 - 0.0077 16.6 0.0 0.013 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 CQR58140.1 - 0.01 16.4 0.0 0.018 15.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CQR58140.1 - 0.011 16.2 0.7 0.024 15.2 0.3 1.7 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR58140.1 - 0.016 14.9 0.1 0.054 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR58140.1 - 0.018 14.6 0.0 1.8 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 CQR58140.1 - 0.021 15.1 0.2 0.24 11.7 0.1 2.4 2 1 1 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 CQR58140.1 - 0.022 14.9 0.0 0.052 13.6 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 CQR58140.1 - 0.035 13.7 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.16 CQR58140.1 - 0.035 13.5 0.1 0.18 11.2 0.1 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.6 CQR58140.1 - 0.044 14.0 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 CQR58140.1 - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain T2SSE PF00437.20 CQR58140.1 - 0.094 11.8 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 CQR58140.1 - 0.1 11.8 0.2 0.16 11.1 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 CQR58140.1 - 0.14 11.9 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 CQR58140.1 - 0.14 11.8 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 CQR58140.1 - 0.16 11.7 0.1 0.35 10.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 CQR58140.1 - 0.16 11.3 0.1 18 4.6 0.0 2.2 2 0 0 2 2 2 0 KaiC HATPase_c PF02518.26 CQR58141.1 - 3.5e-20 72.6 0.0 7.3e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58141.1 - 4.3e-05 23.5 0.0 7.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR58141.1 - 0.06 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR58141.1 - 0.072 13.0 0.0 1.3 9.0 0.0 2.5 2 0 0 2 2 2 0 GHKL domain DUF948 PF06103.11 CQR58141.1 - 0.31 11.3 1.3 1.8 8.9 0.3 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Response_reg PF00072.24 CQR58142.1 - 1.2e-24 86.6 0.0 2.1e-24 85.8 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58142.1 - 3.6e-23 81.4 0.1 6.7e-23 80.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DUF3060 PF11259.8 CQR58142.1 - 0.14 11.9 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3060) Spore_Cse60 PF10957.8 CQR58143.1 - 1.8e-05 24.7 0.3 2.8e-05 24.1 0.3 1.5 1 1 0 1 1 1 1 Sporulation protein Cse60 DUF2536 PF10750.9 CQR58143.1 - 0.004 17.0 0.6 0.013 15.3 0.6 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2536) VCBS PF13517.6 CQR58144.1 - 0.00022 21.8 7.0 0.023 15.3 0.7 4.4 2 2 4 6 6 6 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Dockerin_1 PF00404.18 CQR58144.1 - 0.064 13.5 0.4 17 5.7 0.0 3.2 3 0 0 3 3 3 0 Dockerin type I domain FG-GAP PF01839.23 CQR58144.1 - 0.073 13.2 12.1 0.43 10.8 2.2 4.6 5 0 0 5 5 5 0 FG-GAP repeat Response_reg PF00072.24 CQR58145.1 - 7.1e-27 93.8 0.0 1e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58145.1 - 7e-23 80.5 0.0 1.3e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR58146.1 - 7.8e-26 90.8 0.1 1.8e-25 89.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58146.1 - 2.6e-13 49.8 0.0 5.6e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR58146.1 - 1.9e-11 44.2 0.0 4e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_5 PF14501.6 CQR58146.1 - 3.4e-05 23.7 0.0 6.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain dCache_1 PF02743.18 CQR58146.1 - 0.0006 19.7 0.1 0.0011 18.9 0.1 1.3 1 0 0 1 1 1 1 Cache domain HATPase_c_3 PF13589.6 CQR58146.1 - 0.012 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58146.1 - 0.03 14.3 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GDYXXLXY PF14345.6 CQR58146.1 - 0.15 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 GDYXXLXY protein FecCD PF01032.18 CQR58147.1 - 7.8e-172 570.4 74.9 5.9e-87 291.6 30.4 2.0 2 0 0 2 2 2 2 FecCD transport family DUF433 PF04255.14 CQR58147.1 - 0.089 12.7 1.4 4.3 7.3 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF433) TPIP1 PF15338.6 CQR58147.1 - 0.14 12.2 2.2 1.1 9.3 0.5 2.6 2 0 0 2 2 2 0 p53-regulated apoptosis-inducing protein 1 Peripla_BP_2 PF01497.18 CQR58148.1 - 4.6e-26 91.8 1.9 5.8e-26 91.5 1.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein NLPC_P60 PF00877.19 CQR58149.1 - 1e-30 105.8 0.1 1.2e-30 105.6 0.1 1.0 1 0 0 1 1 1 1 NlpC/P60 family LRAT PF04970.13 CQR58149.1 - 0.0027 18.0 0.0 0.0036 17.6 0.0 1.2 1 0 0 1 1 1 1 Lecithin retinol acyltransferase Peptidase_C92 PF05708.12 CQR58149.1 - 0.022 14.8 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CHAP PF05257.16 CQR58149.1 - 0.054 14.1 0.0 0.077 13.6 0.0 1.2 1 0 0 1 1 1 0 CHAP domain Hexapep PF00132.24 CQR58150.1 - 7e-14 50.9 12.7 1.2e-08 34.3 2.4 3.9 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 CQR58150.1 - 6.3e-12 45.0 9.4 1.2e-07 31.3 1.4 3.8 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Mac PF12464.8 CQR58150.1 - 1.5e-06 28.3 0.0 2.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Maltose acetyltransferase DUF1349 PF07081.11 CQR58151.1 - 5.3e-41 140.3 0.1 6.2e-41 140.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) SpoU_methylase PF00588.19 CQR58153.1 - 3.5e-34 118.0 0.0 1.1e-33 116.4 0.0 1.7 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 CQR58153.1 - 4.9e-05 23.5 0.0 8.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 RNA 2'-O ribose methyltransferase substrate binding TrkA_N PF02254.18 CQR58154.1 - 7.5e-29 100.3 0.7 1.6e-28 99.3 0.7 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 CQR58154.1 - 1.2e-16 60.3 0.7 3.3e-15 55.7 0.0 2.9 3 0 0 3 3 3 1 TrkA-C domain 2-Hacid_dh_C PF02826.19 CQR58154.1 - 2.3e-06 27.1 0.1 4.4e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 CQR58154.1 - 1.1e-05 25.7 0.2 4.6e-05 23.6 0.2 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.26 CQR58154.1 - 2e-05 24.6 1.1 0.012 15.6 0.5 2.9 3 1 1 4 4 4 2 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 CQR58154.1 - 0.00037 19.9 1.2 0.00057 19.2 1.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UPF0146 PF03686.13 CQR58154.1 - 0.00061 19.7 0.3 0.0025 17.7 0.2 2.2 2 1 0 2 2 1 1 Uncharacterised protein family (UPF0146) 3HCDH_N PF02737.18 CQR58154.1 - 0.0009 19.2 0.3 0.0018 18.2 0.3 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 CQR58154.1 - 0.00099 19.4 0.3 0.0016 18.7 0.3 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 CQR58154.1 - 0.003 18.0 0.0 0.0056 17.2 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.17 CQR58154.1 - 0.0032 18.0 0.7 0.0079 16.8 0.4 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 CQR58154.1 - 0.0037 16.9 0.1 0.0061 16.2 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 CQR58154.1 - 0.0041 17.2 0.1 0.0084 16.2 0.1 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 CQR58154.1 - 0.0044 17.0 0.0 0.0085 16.1 0.0 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 CQR58154.1 - 0.0059 17.1 0.1 0.013 16.0 0.1 1.7 2 0 0 2 2 1 1 XdhC Rossmann domain IlvN PF07991.12 CQR58154.1 - 0.013 15.1 0.4 0.022 14.3 0.4 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Epimerase PF01370.21 CQR58154.1 - 0.02 14.3 0.1 0.035 13.6 0.0 1.4 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family ThiF PF00899.21 CQR58154.1 - 0.029 13.7 1.0 0.099 12.0 0.2 1.9 1 1 1 2 2 2 0 ThiF family CbiA PF01656.23 CQR58154.1 - 0.049 13.7 0.0 0.093 12.8 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PglD_N PF17836.1 CQR58154.1 - 0.062 14.0 0.3 0.17 12.5 0.3 1.8 1 0 0 1 1 1 0 PglD N-terminal domain Pyr_redox PF00070.27 CQR58154.1 - 0.094 13.3 0.8 3.8 8.1 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase UPF0180 PF03698.13 CQR58154.1 - 0.11 12.7 0.1 1 9.6 0.0 2.3 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) DAO PF01266.24 CQR58154.1 - 0.13 11.8 0.0 0.17 11.4 0.0 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase NmrA PF05368.13 CQR58154.1 - 0.15 11.6 0.5 0.27 10.8 0.5 1.5 1 1 0 1 1 1 0 NmrA-like family SSPI PF14098.6 CQR58155.1 - 5.4e-21 74.5 0.0 6.4e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Small, acid-soluble spore protein I GTP_EFTU PF00009.27 CQR58156.1 - 1.7e-49 168.0 0.0 2.4e-49 167.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RF3_C PF16658.5 CQR58156.1 - 3.8e-45 152.9 0.5 8.3e-45 151.8 0.5 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 CQR58156.1 - 2.4e-06 27.8 0.0 9.6e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 CQR58156.1 - 2.7e-06 27.4 0.0 6.6e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.6 CQR58156.1 - 6.4e-05 23.0 0.0 0.00015 21.8 0.0 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II FeoB_N PF02421.18 CQR58156.1 - 0.007 15.9 0.0 0.12 11.9 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B DDE_Tnp_1 PF01609.21 CQR58157.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR58157.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR58157.1 - 1.2e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR58157.1 - 0.00032 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain G6PD_C PF02781.16 CQR58158.1 - 1.3e-116 388.9 0.0 1.8e-116 388.4 0.0 1.2 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, C-terminal domain G6PD_N PF00479.22 CQR58158.1 - 5.1e-64 216.1 0.0 7.9e-64 215.5 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF1779 PF08680.10 CQR58159.1 - 2e-06 28.1 0.0 2.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 TATA-box binding Response_reg PF00072.24 CQR58160.1 - 1.4e-26 92.9 0.1 2.3e-26 92.2 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR58160.1 - 1.4e-21 75.7 0.1 2.8e-21 74.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR58160.1 - 4.8e-05 23.0 0.2 0.0003 20.4 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR58160.1 - 0.035 13.6 0.1 0.094 12.2 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 CQR58160.1 - 0.045 13.6 0.2 0.35 10.7 0.0 2.4 2 1 0 2 2 2 0 Homeodomain-like domain HisKA_3 PF07730.13 CQR58161.1 - 9.4e-19 67.7 5.7 1.2e-18 67.4 4.2 2.0 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR58161.1 - 1.6e-11 44.7 0.2 4.6e-11 43.2 0.2 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58161.1 - 7e-05 22.8 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 CQR58161.1 - 0.01 16.2 0.1 0.031 14.7 0.1 1.8 1 0 0 1 1 1 0 HAMP domain HATPase_c_3 PF13589.6 CQR58161.1 - 0.027 14.3 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1385 PF07136.11 CQR58161.1 - 0.089 12.1 0.1 0.19 11.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) DUF4164 PF13747.6 CQR58161.1 - 0.41 10.9 7.1 0.15 12.4 3.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF2154 PF09922.9 CQR58162.1 - 6.6e-27 93.7 0.0 8.4e-27 93.3 0.0 1.1 1 0 0 1 1 1 1 Cell wall-active antibiotics response 4TMS YvqF Peptidase_U32 PF01136.19 CQR58162.1 - 0.05 12.7 0.0 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase family U32 DUF973 PF06157.11 CQR58162.1 - 0.41 9.6 4.4 0.51 9.3 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF2207 PF09972.9 CQR58162.1 - 0.65 8.7 3.1 0.95 8.2 3.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 CQR58162.1 - 9.1 6.4 8.9 19 5.3 8.9 1.4 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III PspA_IM30 PF04012.12 CQR58164.1 - 1.4e-42 145.8 27.9 1.6e-42 145.6 27.9 1.0 1 0 0 1 1 1 1 PspA/IM30 family Tcp10_C PF07202.13 CQR58164.1 - 0.022 14.7 0.3 0.04 13.9 0.3 1.3 1 0 0 1 1 1 0 T-complex protein 10 C-terminus DUF724 PF05266.14 CQR58164.1 - 0.05 13.4 19.0 0.15 11.8 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) CENP-H PF05837.12 CQR58164.1 - 2.7 8.5 19.7 0.075 13.4 3.7 2.7 3 0 0 3 3 3 0 Centromere protein H (CENP-H) PspC PF04024.12 CQR58165.1 - 1.8e-15 56.5 0.1 2.3e-15 56.1 0.1 1.1 1 0 0 1 1 1 1 PspC domain PspA_IM30 PF04012.12 CQR58166.1 - 4.8e-28 98.2 23.2 6e-28 97.9 23.2 1.1 1 0 0 1 1 1 1 PspA/IM30 family DUF3417 PF11897.8 CQR58166.1 - 0.033 14.6 1.0 0.033 14.6 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3417) PA28_beta PF02252.18 CQR58166.1 - 0.064 12.9 2.1 0.12 12.0 1.7 1.6 1 1 0 1 1 1 0 Proteasome activator pa28 beta subunit CDH1_2_SANT_HL1 PF18375.1 CQR58166.1 - 0.16 12.7 0.1 0.16 12.7 0.1 2.8 2 1 1 3 3 3 0 CDH1/2 SANT-Helical linker 1 COG2 PF06148.11 CQR58166.1 - 0.38 10.8 11.5 0.047 13.8 2.8 2.6 1 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.12 CQR58166.1 - 3 7.9 9.5 6.9 6.7 0.6 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) DUF745 PF05335.13 CQR58166.1 - 3.4 7.3 19.3 0.91 9.2 15.7 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF745) Vfa1 PF08432.10 CQR58166.1 - 5.1 7.4 8.9 10 6.4 8.9 1.5 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Peptidase_A22B PF04258.13 CQR58167.1 - 0.0027 17.3 1.1 0.0034 17.0 1.1 1.0 1 0 0 1 1 1 1 Signal peptide peptidase DUF2583 PF10762.9 CQR58167.1 - 4 7.9 9.9 3.7 8.0 1.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) Trans_reg_C PF00486.28 CQR58168.1 - 3.3e-25 88.0 0.2 6.1e-25 87.1 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR58168.1 - 5.4e-25 87.7 0.2 8.4e-25 87.1 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 CQR58169.1 - 1.3e-21 77.2 0.1 2.8e-21 76.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58169.1 - 2.4e-11 43.5 0.2 4.8e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR58169.1 - 0.0015 18.4 0.0 0.0035 17.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58169.1 - 0.02 14.8 0.0 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Exonuc_VII_L PF02601.15 CQR58169.1 - 0.098 12.2 0.8 0.14 11.7 0.8 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit ABC_tran PF00005.27 CQR58170.1 - 2.7e-34 118.6 0.0 4.4e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR58170.1 - 3e-10 39.9 1.3 1.8e-09 37.3 1.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR58170.1 - 5.2e-05 23.2 2.0 0.18 11.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR58170.1 - 0.00026 20.7 0.2 0.00061 19.5 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR58170.1 - 0.00074 19.3 0.3 0.055 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 CQR58170.1 - 0.0012 19.1 1.2 0.0074 16.6 1.2 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR58170.1 - 0.0016 18.3 0.1 0.0033 17.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 CQR58170.1 - 0.002 18.5 0.1 0.0042 17.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 CQR58170.1 - 0.0025 17.6 0.3 0.88 9.3 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 CQR58170.1 - 0.03 13.9 0.2 0.59 9.7 0.2 2.2 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 CQR58170.1 - 0.034 13.5 0.1 0.065 12.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_13 PF13166.6 CQR58170.1 - 0.034 12.8 0.1 1 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 CQR58170.1 - 0.038 13.9 0.7 0.44 10.4 0.1 2.1 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 CQR58170.1 - 0.046 12.9 0.9 0.42 9.8 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 CQR58170.1 - 0.046 13.4 0.3 0.14 11.9 0.0 1.8 2 1 1 3 3 3 0 AAA domain Rad17 PF03215.15 CQR58170.1 - 0.047 13.6 0.1 0.81 9.6 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain G-alpha PF00503.20 CQR58170.1 - 0.049 12.8 0.0 0.069 12.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.6 CQR58170.1 - 0.054 14.0 0.1 0.19 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 CQR58170.1 - 0.071 13.2 0.3 0.18 11.9 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 CQR58170.1 - 0.084 12.5 0.5 0.11 12.0 0.4 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.9 CQR58170.1 - 0.086 11.6 0.7 1.8 7.3 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class TrwB_AAD_bind PF10412.9 CQR58170.1 - 0.12 11.2 0.1 0.22 10.4 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 CQR58170.1 - 0.15 12.2 0.6 0.34 11.1 0.6 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR58170.1 - 0.15 12.3 0.0 2.4 8.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF4897 PF16238.5 CQR58170.1 - 0.18 11.7 0.3 0.32 10.8 0.1 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4897) AAA_18 PF13238.6 CQR58170.1 - 0.24 12.0 1.2 0.41 11.2 1.2 1.8 1 1 0 1 1 1 0 AAA domain FtsX PF02687.21 CQR58171.1 - 6e-13 49.1 9.6 4.7e-09 36.6 0.7 5.3 6 0 0 6 6 6 3 FtsX-like permease family Melibiase PF02065.18 CQR58172.1 - 6.3e-168 558.1 0.0 7.8e-168 557.8 0.0 1.1 1 0 0 1 1 1 1 Melibiase Glyco_hydro_36N PF16875.5 CQR58172.1 - 4.6e-93 311.4 0.0 7.1e-93 310.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 36 N-terminal domain Glyco_hydro_36C PF16874.5 CQR58172.1 - 8.2e-28 96.7 0.0 2.6e-27 95.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 36 C-terminal domain GHL10 PF02638.15 CQR58172.1 - 4e-05 22.8 0.0 7.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 Glyco_hydro_31 PF01055.26 CQR58172.1 - 0.004 16.4 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Peptidase_C54 PF03416.19 CQR58172.1 - 0.067 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase family C54 Melibiase_2 PF16499.5 CQR58172.1 - 0.11 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Alpha galactosidase A FMN_red PF03358.15 CQR58173.1 - 3.5e-29 101.6 0.0 4.4e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 CQR58173.1 - 0.021 14.5 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin-like fold EamA PF00892.20 CQR58174.1 - 1.7e-45 154.5 40.3 9.4e-24 84.1 18.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF4131 PF13567.6 CQR58174.1 - 3 7.5 17.1 1.4 8.6 1.3 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) HTH_24 PF13412.6 CQR58175.1 - 1.5e-16 59.6 0.3 3.7e-16 58.4 0.2 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 CQR58175.1 - 4.6e-16 58.4 0.1 8.5e-16 57.5 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 CQR58175.1 - 4.7e-13 48.9 0.0 7.3e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 CQR58175.1 - 2.1e-06 27.6 0.0 3.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 CQR58175.1 - 2.4e-06 27.4 0.0 7.4e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 CQR58175.1 - 3.5e-06 26.9 0.0 7.4e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 CQR58175.1 - 4.9e-06 26.2 0.0 1.1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 CQR58175.1 - 2.5e-05 24.1 0.0 4.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 CQR58175.1 - 0.00022 21.4 0.0 0.00051 20.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 CQR58175.1 - 0.00049 20.1 0.0 0.00095 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR58175.1 - 0.00074 19.3 0.8 0.0013 18.6 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 CQR58175.1 - 0.00078 19.2 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 CQR58175.1 - 0.00091 18.7 0.1 0.0017 17.8 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 CQR58175.1 - 0.0016 18.3 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 CQR58175.1 - 0.0022 17.6 0.0 0.0046 16.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1670 PF07900.11 CQR58175.1 - 0.0052 16.2 0.0 0.007 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) Rrf2 PF02082.20 CQR58175.1 - 0.0059 16.9 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.6 CQR58175.1 - 0.011 15.9 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 CQR58175.1 - 0.012 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 CQR58175.1 - 0.025 14.4 0.1 0.04 13.8 0.1 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_1 PF00126.27 CQR58175.1 - 0.029 14.3 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 CQR58175.1 - 0.033 14.0 0.1 0.077 12.8 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Mga PF08280.11 CQR58175.1 - 0.037 14.1 0.0 0.086 12.9 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain GntR PF00392.21 CQR58175.1 - 0.07 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3251 PF11622.8 CQR58175.1 - 0.11 12.1 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) HTH_27 PF13463.6 CQR58177.1 - 0.0044 17.5 0.1 0.0083 16.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 CQR58177.1 - 0.011 15.8 0.1 0.045 13.8 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 CQR58177.1 - 0.045 13.7 0.6 0.12 12.3 0.6 1.8 1 1 0 1 1 1 0 MarR family HTH_34 PF13601.6 CQR58177.1 - 0.092 12.9 0.1 0.21 11.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain BPD_transp_1 PF00528.22 CQR58178.1 - 4e-22 78.9 10.8 4e-22 78.9 10.8 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58179.1 - 4.9e-13 49.2 13.4 4.9e-13 49.2 13.4 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR58180.1 - 3e-39 135.5 15.8 4.7e-39 134.9 15.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR58180.1 - 2.3e-23 83.7 14.8 3.9e-23 82.9 14.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58180.1 - 0.0079 15.6 0.4 0.091 12.2 0.1 2.4 3 0 0 3 3 3 1 Bacterial extracellular solute-binding protein HAD_2 PF13419.6 CQR58181.1 - 8.7e-22 78.1 0.0 2.4e-20 73.4 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR58181.1 - 4.9e-17 62.9 0.7 3.4e-16 60.2 0.0 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR58181.1 - 5.4e-08 33.4 0.6 4.9e-07 30.3 0.6 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR58181.1 - 6.4e-07 29.4 0.7 1.5e-06 28.1 0.7 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 CQR58181.1 - 0.064 13.0 2.1 0.066 12.9 0.2 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Multi_Drug_Res PF00893.19 CQR58182.1 - 1.2e-27 96.4 12.4 1.6e-27 95.9 12.4 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein Tmem26 PF09772.9 CQR58182.1 - 0.0048 16.3 0.6 0.0072 15.7 0.6 1.3 1 0 0 1 1 1 1 Transmembrane protein 26 EamA PF00892.20 CQR58182.1 - 0.11 12.7 17.5 0.16 12.1 17.5 1.3 1 1 0 1 1 1 0 EamA-like transporter family DUF3093 PF11292.8 CQR58182.1 - 4 7.7 9.0 41 4.4 5.3 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3093) Metallophos PF00149.28 CQR58183.1 - 7.1e-08 33.2 1.3 1.3e-07 32.3 1.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR58183.1 - 9.5e-06 25.9 0.8 7e-05 23.1 0.8 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Lipoprotein_9 PF03180.14 CQR58184.1 - 8.7e-75 250.9 0.6 1e-74 250.6 0.6 1.0 1 0 0 1 1 1 1 NLPA lipoprotein Phosphonate-bd PF12974.7 CQR58184.1 - 0.015 14.9 0.2 0.076 12.6 0.1 2.0 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein P2 PF07194.11 CQR58184.1 - 0.15 12.1 0.2 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 P2 response regulator binding domain BPD_transp_1 PF00528.22 CQR58185.1 - 7.2e-13 48.7 14.6 9e-13 48.4 14.6 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR58186.1 - 4.3e-36 124.5 0.0 8.9e-36 123.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR58186.1 - 1e-10 42.0 0.4 8.5e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58186.1 - 0.0021 17.6 0.1 0.094 12.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR58186.1 - 0.0032 17.2 0.0 0.0066 16.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 CQR58186.1 - 0.0098 16.1 0.0 0.042 14.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR58186.1 - 0.014 15.8 0.1 0.082 13.3 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 CQR58186.1 - 0.022 15.1 0.1 0.12 12.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR58186.1 - 0.028 14.3 0.0 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 CQR58186.1 - 0.13 12.8 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR58186.1 - 0.16 11.6 0.3 12 5.5 0.1 2.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 CQR58186.1 - 0.16 10.8 0.1 12 4.5 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ADP_ribosyl_GH PF03747.14 CQR58187.1 - 2.6e-43 148.8 4.6 3.3e-43 148.5 4.6 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase IU_nuc_hydro PF01156.19 CQR58188.1 - 2.1e-88 296.8 0.0 2.4e-88 296.6 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase BPD_transp_2 PF02653.16 CQR58189.1 - 7.8e-32 110.5 36.1 9.7e-32 110.2 36.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component UPF0182 PF03699.13 CQR58189.1 - 3.2 5.8 11.0 0.032 12.4 3.0 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0182) BPD_transp_2 PF02653.16 CQR58190.1 - 1.1e-36 126.4 26.4 1.1e-36 126.4 26.4 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 CQR58191.1 - 2.7e-47 160.7 0.1 8.8e-30 104.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 CQR58191.1 - 6.3e-07 29.5 0.0 0.023 14.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR58191.1 - 3.8e-05 24.3 0.4 0.0044 17.6 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 CQR58191.1 - 6.9e-05 22.5 0.2 0.0018 18.0 0.0 2.7 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_27 PF13514.6 CQR58191.1 - 0.0016 18.1 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR58191.1 - 0.0026 17.7 1.0 0.087 12.7 0.0 2.6 3 0 0 3 3 3 1 RsgA GTPase SMC_N PF02463.19 CQR58191.1 - 0.0044 16.5 0.0 0.36 10.2 0.0 2.8 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 CQR58191.1 - 0.0054 16.0 0.5 0.65 9.2 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_10 PF12846.7 CQR58191.1 - 0.012 14.6 0.0 0.028 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain MeaB PF03308.16 CQR58191.1 - 0.02 13.9 1.0 0.18 10.7 0.4 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 CQR58191.1 - 0.027 14.8 0.3 0.39 11.0 0.3 2.5 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 CQR58191.1 - 0.037 13.9 0.1 0.075 12.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein MMR_HSR1 PF01926.23 CQR58191.1 - 0.043 13.9 0.0 2.1 8.5 0.0 2.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 CQR58191.1 - 0.13 11.9 0.8 0.4 10.4 0.1 2.1 2 1 0 2 2 2 0 AAA domain Bmp PF02608.14 CQR58192.1 - 1.6e-60 204.7 10.5 2.1e-60 204.3 10.5 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF2829 PF11195.8 CQR58192.1 - 0.014 15.6 0.7 0.067 13.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2829) DUF2201 PF09967.9 CQR58192.1 - 0.08 13.1 0.1 0.22 11.7 0.0 1.7 2 0 0 2 2 2 0 VWA-like domain (DUF2201) HTH_18 PF12833.7 CQR58193.1 - 4e-23 81.5 4.5 2.3e-18 66.2 0.6 1.8 1 1 1 2 2 2 2 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58193.1 - 3.7e-14 52.4 0.6 9.4e-09 35.2 0.2 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR58193.1 - 2e-05 24.5 0.7 4e-05 23.5 0.7 1.6 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR58193.1 - 0.011 15.4 0.8 0.026 14.3 0.8 1.6 1 0 0 1 1 1 0 Cupin domain RET_CLD1 PF17756.1 CQR58193.1 - 0.095 13.0 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 RET Cadherin like domain 1 HTH_18 PF12833.7 CQR58194.1 - 9.8e-21 73.8 0.0 2.3e-20 72.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58194.1 - 9.2e-16 57.5 0.1 5.7e-10 39.0 0.1 2.8 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR58194.1 - 7.1e-06 26.0 1.9 1.6e-05 24.8 1.9 1.6 1 0 0 1 1 1 1 Cache domain GGDEF_2 PF17853.1 CQR58194.1 - 0.0021 18.3 0.0 0.0054 17.0 0.0 1.6 1 0 0 1 1 1 1 GGDEF-like domain HTH_24 PF13412.6 CQR58194.1 - 0.0028 17.2 0.5 1.3 8.6 0.0 3.6 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR58194.1 - 0.021 14.7 0.0 6.5 6.7 0.0 2.8 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.6 CQR58194.1 - 0.026 14.3 0.0 9.8 6.1 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain T4bSS_IcmS PF12608.8 CQR58194.1 - 0.043 14.1 0.0 19 5.6 0.1 2.9 2 1 1 3 3 3 0 Type IVb secretion, IcmS, effector-recruitment ArsR PF09824.9 CQR58194.1 - 0.085 12.5 0.1 0.22 11.1 0.1 1.8 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_38 PF13936.6 CQR58194.1 - 0.1 12.4 0.0 24 4.8 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR58195.1 - 1.1e-15 57.1 0.1 2.3e-15 56.0 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR58195.1 - 4.1e-15 55.3 0.4 8.3e-15 54.3 0.4 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 CQR58195.1 - 1.3e-10 40.7 0.0 2.6e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1492 PF07374.11 CQR58195.1 - 0.0021 18.2 0.2 0.0041 17.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) HTH_23 PF13384.6 CQR58195.1 - 0.0051 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 CQR58195.1 - 0.029 14.1 0.0 0.059 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 CQR58195.1 - 0.036 13.6 0.1 0.18 11.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF4179 PF13786.6 CQR58196.1 - 1.2e-15 57.7 0.0 3.7e-14 53.0 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4179) DUF5643 PF18705.1 CQR58196.1 - 3.4e-06 27.0 0.3 2.5e-05 24.2 0.2 2.4 2 0 0 2 2 2 1 Family of unknown function (DUF5643) DUF3333 PF11812.8 CQR58196.1 - 0.064 13.5 0.6 0.2 11.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3333) DUF3502 PF12010.8 CQR58197.1 - 2.3e-27 96.2 2.4 2.3e-27 96.2 2.4 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF3502) SBP_bac_1 PF01547.25 CQR58197.1 - 4.9e-17 62.9 12.8 4.9e-17 62.9 12.8 2.1 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR58198.1 - 8.2e-14 51.8 16.1 3.9e-13 49.6 16.1 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58199.1 - 2.7e-16 59.8 14.2 2.7e-16 59.8 14.2 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component MerR_1 PF13411.6 CQR58200.1 - 7.2e-19 67.6 0.0 1.4e-18 66.7 0.0 1.4 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 CQR58200.1 - 2.8e-11 43.0 0.0 4.7e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR58200.1 - 5.7e-09 36.4 0.6 1.1e-08 35.5 0.5 1.6 1 1 1 2 2 2 1 MerR, DNA binding Aldo_ket_red PF00248.21 CQR58201.1 - 7.2e-54 183.0 0.0 9.7e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Cass2 PF14526.6 CQR58202.1 - 3.5e-23 82.4 0.6 5.4e-23 81.8 0.6 1.3 1 0 0 1 1 1 1 Integron-associated effector binding protein MerR_1 PF13411.6 CQR58202.1 - 7.4e-12 45.2 0.0 2.2e-11 43.7 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR58202.1 - 5.4e-08 32.5 0.0 1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein TrmO PF01980.16 CQR58203.1 - 9e-29 100.1 0.0 1.1e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Alpha-amylase PF00128.24 CQR58204.1 - 8.5e-48 163.6 9.7 4.6e-47 161.2 9.7 2.0 1 1 0 1 1 1 1 Alpha amylase, catalytic domain CHB_HEX_C_1 PF13290.6 CQR58204.1 - 6.6e-27 93.3 17.4 7e-19 67.6 6.9 4.2 4 0 0 4 4 4 2 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 CQR58204.1 - 5.3e-24 84.1 8.0 1.5e-16 60.3 1.4 3.0 2 0 0 2 2 2 2 Fn3 associated CBM26 PF16738.5 CQR58204.1 - 6.5e-21 74.4 0.5 6.5e-21 74.4 0.5 4.2 7 0 0 7 7 7 1 Starch-binding module 26 CBM_35 PF16990.5 CQR58204.1 - 4.1e-13 49.7 7.7 1.9e-12 47.5 6.2 3.0 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) CBM53 PF16760.5 CQR58204.1 - 5.7e-11 42.8 1.5 5.7e-11 42.8 1.5 3.5 4 0 0 4 4 4 1 Starch/carbohydrate-binding module (family 53) CBM_6 PF03422.15 CQR58204.1 - 2.9e-06 27.6 8.7 2.9e-06 27.6 8.7 4.1 4 0 0 4 4 4 1 Carbohydrate binding module (family 6) Bac_A_amyl_C PF18612.1 CQR58204.1 - 0.067 13.0 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial Alpha amylase C-terminal domain CHB_HEX_C PF03174.13 CQR58204.1 - 0.15 12.0 1.7 0.76 9.8 0.1 2.9 3 0 0 3 3 3 0 Chitobiase/beta-hexosaminidase C-terminal domain ABC_membrane PF00664.23 CQR58205.1 - 2.7e-56 191.2 12.2 3.5e-56 190.9 12.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR58205.1 - 1e-33 116.8 0.0 2.1e-33 115.7 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR58205.1 - 4.2e-06 26.4 0.0 0.00095 18.7 0.0 2.4 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR58205.1 - 1.9e-05 24.6 0.0 4.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 CQR58205.1 - 4.5e-05 23.9 0.0 0.0003 21.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR58205.1 - 0.00024 21.5 0.0 0.0009 19.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR58205.1 - 0.00034 20.9 0.1 0.002 18.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR58205.1 - 0.00042 20.9 0.1 0.0012 19.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 CQR58205.1 - 0.0015 18.5 0.1 0.0046 16.9 0.1 1.8 1 0 0 1 1 1 1 NTPase AAA_21 PF13304.6 CQR58205.1 - 0.0015 18.4 0.0 3.8 7.2 0.0 3.1 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 CQR58205.1 - 0.0028 17.7 0.3 0.031 14.4 0.0 2.9 4 0 0 4 4 2 1 50S ribosome-binding GTPase AAA_30 PF13604.6 CQR58205.1 - 0.0039 16.9 0.0 0.011 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 CQR58205.1 - 0.0057 15.8 0.0 0.0099 15.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 CQR58205.1 - 0.0086 15.8 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain TsaE PF02367.17 CQR58205.1 - 0.012 15.6 0.0 0.046 13.7 0.0 2.0 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 CQR58205.1 - 0.018 14.8 0.1 0.07 12.9 0.0 2.0 2 1 1 3 3 3 0 AAA domain DUF87 PF01935.17 CQR58205.1 - 0.029 14.5 0.0 0.089 12.9 0.0 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_7 PF12775.7 CQR58205.1 - 0.031 13.8 0.0 0.075 12.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region cobW PF02492.19 CQR58205.1 - 0.035 13.7 0.0 0.099 12.2 0.0 1.8 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 CQR58205.1 - 0.041 13.2 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 CQR58205.1 - 0.055 13.4 0.1 0.41 10.5 0.0 2.3 3 0 0 3 3 3 0 NACHT domain IstB_IS21 PF01695.17 CQR58205.1 - 0.062 13.0 0.0 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.22 CQR58205.1 - 0.07 12.7 0.4 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PARP_reg PF02877.14 CQR58205.1 - 0.076 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain Roc PF08477.13 CQR58205.1 - 0.11 12.7 0.0 0.39 10.9 0.0 1.9 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_19 PF13245.6 CQR58205.1 - 0.13 12.5 0.2 0.62 10.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 CQR58205.1 - 0.16 11.3 0.4 0.39 10.0 0.2 1.7 1 1 0 1 1 1 0 FtsK/SpoIIIE family ABC_membrane_2 PF06472.15 CQR58205.1 - 0.28 10.5 5.0 0.55 9.6 5.0 1.4 1 0 0 1 1 1 0 ABC transporter transmembrane region 2 DUF3671 PF12420.8 CQR58205.1 - 1.1 9.3 8.8 0.058 13.5 0.9 2.8 3 0 0 3 3 3 0 Protein of unknown function ABC_membrane PF00664.23 CQR58206.1 - 4e-44 151.3 21.5 5.3e-44 150.9 21.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR58206.1 - 1e-30 107.0 0.0 1.9e-30 106.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR58206.1 - 6.1e-07 29.1 0.9 8.2e-05 22.1 0.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR58206.1 - 0.032 14.6 0.0 0.08 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 CQR58206.1 - 0.042 13.1 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 CQR58206.1 - 0.073 13.0 0.2 0.2 11.5 0.2 1.8 1 1 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 CQR58206.1 - 0.13 12.3 0.1 0.25 11.4 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 CQR58206.1 - 0.35 10.6 3.4 0.23 11.3 0.4 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain Methyltransf_2 PF00891.18 CQR58207.1 - 5e-33 114.2 0.0 6.6e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 CQR58207.1 - 7e-11 42.0 0.3 3e-10 40.0 0.2 2.0 2 0 0 2 2 2 1 Dimerisation domain HTH_45 PF14947.6 CQR58207.1 - 0.0017 18.3 0.3 0.005 16.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix MarR PF01047.22 CQR58207.1 - 0.0022 17.9 0.0 0.0057 16.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 CQR58207.1 - 0.0041 16.9 0.0 0.0097 15.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.6 CQR58207.1 - 0.0062 16.3 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Dimerisation PF08100.11 CQR58207.1 - 0.008 16.2 0.2 0.046 13.7 0.1 2.3 2 0 0 2 2 2 1 Dimerisation domain MarR_2 PF12802.7 CQR58207.1 - 0.0097 15.8 0.1 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 CQR58207.1 - 0.013 15.6 0.0 0.045 13.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain AcetylCoA_hyd_C PF13336.6 CQR58207.1 - 0.1 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Acetyl-CoA hydrolase/transferase C-terminal domain Condensation PF00668.20 CQR58208.1 - 2e-179 597.0 6.2 3.6e-110 368.8 1.7 2.4 2 0 0 2 2 2 2 Condensation domain AMP-binding PF00501.28 CQR58208.1 - 3.9e-90 302.5 0.0 5.8e-90 301.9 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme ketoacyl-synt PF00109.26 CQR58208.1 - 2.5e-65 220.5 0.0 6e-64 216.1 0.0 2.3 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 CQR58208.1 - 6.5e-44 148.7 0.1 1.6e-43 147.4 0.1 1.8 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain PP-binding PF00550.25 CQR58208.1 - 1.9e-24 85.8 0.0 3.7e-11 43.2 0.0 3.0 2 0 0 2 2 2 2 Phosphopantetheine attachment site KAsynt_C_assoc PF16197.5 CQR58208.1 - 4.2e-17 62.6 0.0 1.2e-16 61.2 0.0 1.8 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension AMP-binding_C PF13193.6 CQR58208.1 - 1.3e-07 32.5 0.0 3.4e-07 31.1 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thiolase_N PF00108.23 CQR58208.1 - 0.00025 20.5 0.2 0.0005 19.5 0.2 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Amino_oxidase PF01593.24 CQR58209.1 - 4.9e-15 55.8 0.0 2.5e-14 53.5 0.0 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 CQR58209.1 - 1e-11 44.9 0.2 2.6e-11 43.6 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 CQR58209.1 - 2.6e-07 30.6 0.5 2.8e-06 27.2 0.2 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR58209.1 - 9.9e-07 28.3 0.0 0.0011 18.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 CQR58209.1 - 3.7e-06 26.3 0.3 0.0035 16.5 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 CQR58209.1 - 9.9e-06 24.5 2.1 0.018 13.8 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 CQR58209.1 - 4.7e-05 22.8 4.5 0.0069 15.7 1.2 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase MCRA PF06100.11 CQR58209.1 - 0.00058 18.8 0.5 0.00086 18.2 0.1 1.5 2 0 0 2 2 2 1 MCRA family GIDA PF01134.22 CQR58209.1 - 0.0054 15.9 2.6 0.8 8.7 0.9 2.5 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 CQR58209.1 - 0.0075 15.7 0.3 0.044 13.1 0.0 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 CQR58209.1 - 0.013 14.6 0.3 1.2 8.1 0.0 2.9 3 0 0 3 3 3 0 Lycopene cyclase protein Pyr_redox PF00070.27 CQR58209.1 - 0.014 15.9 0.9 3.9 8.1 0.0 2.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR58209.1 - 0.035 13.3 0.5 0.073 12.3 0.3 1.6 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 CQR58209.1 - 0.059 12.6 0.2 0.12 11.6 0.2 1.4 1 0 0 1 1 1 0 Thi4 family ketoacyl-synt PF00109.26 CQR58210.1 - 4.2e-58 196.9 0.0 3.5e-57 193.9 0.0 2.4 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR58210.1 - 2.4e-56 190.5 0.0 6.7e-56 189.0 0.0 1.9 1 0 0 1 1 1 1 KR domain PS-DH PF14765.6 CQR58210.1 - 6.4e-45 153.7 0.0 9.8e-45 153.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 CQR58210.1 - 8.1e-44 148.4 0.6 1.8e-43 147.3 0.6 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 CQR58210.1 - 4.9e-18 65.6 0.1 1e-16 61.4 0.0 2.7 2 0 0 2 2 2 1 Ketoacyl-synthetase C-terminal extension adh_short PF00106.25 CQR58210.1 - 3.5e-14 52.7 0.0 1.8e-11 43.9 0.0 2.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR58210.1 - 1.3e-10 41.3 0.0 1.2e-09 38.1 0.0 2.6 2 1 1 3 3 3 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 CQR58210.1 - 8.4e-08 32.0 0.0 8.8e-07 28.6 0.0 2.3 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR58210.1 - 5.7e-07 29.3 0.0 2.2e-06 27.3 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase PP-binding PF00550.25 CQR58210.1 - 6.9e-07 29.5 0.1 1.6e-06 28.4 0.1 1.6 1 0 0 1 1 1 1 Phosphopantetheine attachment site 3Beta_HSD PF01073.19 CQR58210.1 - 0.00071 18.7 0.0 0.0021 17.1 0.0 1.8 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 CQR58210.1 - 0.0071 15.5 0.0 0.016 14.4 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Thiolase_N PF00108.23 CQR58210.1 - 0.093 12.1 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 CQR58211.1 - 2.6e-68 230.3 0.0 4.8e-68 229.5 0.0 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain KR PF08659.10 CQR58211.1 - 2e-54 184.2 0.0 4e-54 183.3 0.0 1.5 1 0 0 1 1 1 1 KR domain Ketoacyl-synt_C PF02801.22 CQR58211.1 - 9.6e-43 145.0 0.0 1.9e-42 144.0 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain PS-DH PF14765.6 CQR58211.1 - 4.8e-41 140.9 0.0 9.9e-41 139.9 0.0 1.5 1 0 0 1 1 1 1 Polyketide synthase dehydratase KAsynt_C_assoc PF16197.5 CQR58211.1 - 3.2e-17 63.0 0.0 7.6e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 CQR58211.1 - 3.9e-13 49.5 0.0 9.2e-13 48.3 0.0 1.7 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short PF00106.25 CQR58211.1 - 2.6e-11 43.4 0.4 1.2e-10 41.1 0.1 2.4 2 1 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR58211.1 - 1.7e-09 37.6 0.0 2.7e-08 33.7 0.0 2.2 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Thiolase_N PF00108.23 CQR58211.1 - 0.00011 21.6 0.4 0.00031 20.2 0.1 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 CQR58211.1 - 0.024 14.5 0.1 0.069 13.0 0.1 1.8 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Acyl_transf_1 PF00698.21 CQR58212.1 - 2e-42 145.9 0.1 2.7e-42 145.4 0.1 1.2 1 0 0 1 1 1 1 Acyl transferase domain R2K_3 PF14243.6 CQR58212.1 - 0.012 15.6 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Chalcone PF02431.15 CQR58212.1 - 0.089 12.2 1.0 1.5 8.2 0.3 2.7 2 1 1 3 3 3 0 Chalcone-flavanone isomerase L27_2 PF09045.10 CQR58212.1 - 0.14 12.2 0.8 5.4 7.0 0.1 2.4 2 0 0 2 2 2 0 L27_2 Condensation PF00668.20 CQR58213.1 - 0 2122.5 4.5 4.7e-112 375.0 0.1 10.3 8 2 0 9 9 9 9 Condensation domain AMP-binding PF00501.28 CQR58213.1 - 0 1593.8 0.0 1.9e-98 329.9 0.1 5.2 5 0 0 5 5 5 5 AMP-binding enzyme PP-binding PF00550.25 CQR58213.1 - 1.5e-67 223.8 0.1 4.8e-14 52.5 0.1 6.4 6 0 0 6 6 6 5 Phosphopantetheine attachment site AMP-binding_C PF13193.6 CQR58213.1 - 1.7e-60 202.0 4.5 2e-11 44.7 0.0 6.3 6 0 0 6 6 6 5 AMP-binding enzyme C-terminal domain RHH_4 PF13467.6 CQR58213.1 - 0.25 11.3 0.9 2.4 8.1 0.0 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix domain rve PF00665.26 CQR58214.1 - 2.9e-08 33.9 0.1 9.8e-08 32.2 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain HTH_38 PF13936.6 CQR58214.1 - 9.7e-07 28.5 0.2 2.3e-06 27.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR58214.1 - 1.1e-05 25.0 0.4 3e-05 23.7 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 CQR58214.1 - 4.4e-05 23.4 0.1 0.00011 22.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 CQR58214.1 - 9.1e-05 22.5 0.1 0.0002 21.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.8 CQR58214.1 - 0.0015 18.3 0.0 0.0081 16.0 0.0 2.3 1 0 0 1 1 1 1 Tc3 transposase HTH_3 PF01381.22 CQR58214.1 - 0.0018 18.3 0.1 0.004 17.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 CQR58214.1 - 0.0087 16.5 0.1 0.021 15.3 0.1 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_36 PF13730.6 CQR58214.1 - 0.016 15.2 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PPPI_inhib PF14895.6 CQR58214.1 - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein phosphatase 1 inhibitor HTH_17 PF12728.7 CQR58214.1 - 0.024 14.8 0.0 0.14 12.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 CQR58214.1 - 0.045 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 CQR58214.1 - 0.048 13.7 0.1 0.12 12.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_31 PF13560.6 CQR58214.1 - 0.072 13.4 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 CQR58214.1 - 0.082 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.12 CQR58214.1 - 0.1 12.5 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Thioesterase PF00975.20 CQR58215.1 - 1.1e-35 123.8 0.0 1.3e-35 123.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase domain Lipase_3 PF01764.25 CQR58215.1 - 9e-05 22.4 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) Hydrolase_4 PF12146.8 CQR58215.1 - 0.0035 16.6 0.0 0.0061 15.8 0.0 1.5 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 CQR58215.1 - 0.0079 15.9 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF2464 PF10240.9 CQR58215.1 - 0.057 13.0 0.0 0.066 12.8 0.0 1.2 1 0 0 1 1 1 0 Multivesicular body subunit 12 PAF-AH_p_II PF03403.13 CQR58215.1 - 0.08 11.4 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 CQR58215.1 - 0.24 12.0 0.0 0.24 12.0 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family Intg_mem_TP0381 PF09529.10 CQR58216.1 - 0.023 14.2 0.4 0.024 14.2 0.4 1.0 1 0 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) DUF4173 PF13777.6 CQR58216.1 - 0.036 13.5 0.4 0.043 13.3 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) Vpu PF00558.19 CQR58216.1 - 0.065 13.0 1.7 0.1 12.4 1.7 1.4 1 1 0 1 1 1 0 Vpu protein DUF5362 PF17319.2 CQR58216.1 - 0.14 12.0 6.0 1.7 8.6 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5362) TMEM238 PF15125.6 CQR58216.1 - 0.41 10.9 5.0 2.5 8.4 1.7 2.1 2 0 0 2 2 2 0 TMEM238 protein family UL41A PF17591.2 CQR58216.1 - 0.8 9.8 5.4 0.5 10.5 1.1 2.0 1 1 1 2 2 2 0 Herpesvirus UL41A CRPA PF05745.11 CQR58216.1 - 1.8 8.6 5.7 7 6.6 5.7 1.8 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) ABC2_membrane_3 PF12698.7 CQR58217.1 - 2e-35 122.6 9.8 2.3e-35 122.3 9.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR58217.1 - 1.9e-18 66.6 14.2 9.6e-16 57.8 9.1 2.2 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR58217.1 - 3e-11 43.2 7.9 3.6e-11 42.9 7.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR58217.1 - 9.6e-07 28.9 9.4 1.2e-06 28.6 6.2 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR58217.1 - 0.00011 21.8 8.8 0.00011 21.8 8.8 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF5367 PF17329.2 CQR58217.1 - 0.013 15.6 4.2 0.13 12.4 1.3 2.8 2 1 0 2 2 2 0 Family of unknown function (DUF5367) DUF2085 PF09858.9 CQR58217.1 - 7.8 7.0 8.6 11 6.6 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2085) ABC2_membrane_3 PF12698.7 CQR58218.1 - 9e-39 133.5 19.2 1e-38 133.3 19.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR58218.1 - 3.5e-16 59.3 13.5 6.9e-15 55.0 9.7 2.2 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR58218.1 - 1e-09 38.1 4.1 1.6e-09 37.5 4.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR58218.1 - 0.0016 18.4 11.4 0.0016 18.4 11.4 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein RabGAP-TBC PF00566.18 CQR58218.1 - 0.1 12.2 2.2 0.21 11.2 2.2 1.5 1 0 0 1 1 1 0 Rab-GTPase-TBC domain ABC2_membrane_5 PF13346.6 CQR58218.1 - 3.4 7.2 30.3 0.65 9.5 21.3 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 CQR58219.1 - 1.3e-33 116.5 0.1 2.7e-33 115.4 0.1 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58219.1 - 9.9e-12 45.3 0.5 3.8e-08 33.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 CQR58219.1 - 1.7e-06 28.7 0.7 4.6e-06 27.2 0.7 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 CQR58219.1 - 7.2e-05 22.5 0.2 0.00015 21.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR58219.1 - 0.0011 18.7 4.5 0.72 9.5 0.2 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 CQR58219.1 - 0.0014 19.2 2.8 0.0018 18.8 1.9 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR58219.1 - 0.0015 18.5 0.1 0.0022 17.9 0.1 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 CQR58219.1 - 0.0017 17.8 0.4 0.59 9.5 0.1 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 CQR58219.1 - 0.0045 16.3 0.0 0.0078 15.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin G-alpha PF00503.20 CQR58219.1 - 0.0065 15.7 0.3 0.0088 15.2 0.3 1.2 1 0 0 1 1 1 1 G-protein alpha subunit AAA_PrkA PF08298.11 CQR58219.1 - 0.0078 15.2 0.1 0.019 13.9 0.1 1.6 1 1 0 1 1 1 1 PrkA AAA domain AAA_27 PF13514.6 CQR58219.1 - 0.023 14.3 0.1 0.61 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 CQR58219.1 - 0.039 13.8 0.2 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 MukB N-terminal AAA PF00004.29 CQR58219.1 - 0.11 13.0 1.4 0.81 10.1 0.4 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) tRNA-synt_1c PF00749.21 CQR58219.1 - 0.12 11.2 0.1 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain Response_reg PF00072.24 CQR58220.1 - 3.2e-29 101.3 0.3 5e-29 100.7 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR58220.1 - 5e-20 70.8 0.2 9.2e-20 70.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR58220.1 - 1.4e-05 24.6 0.0 3.8e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR58220.1 - 0.0076 15.7 0.0 0.02 14.4 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR58220.1 - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 CQR58220.1 - 0.017 14.7 0.0 0.04 13.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 CQR58220.1 - 0.086 13.3 0.1 0.58 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HisKA_3 PF07730.13 CQR58221.1 - 1.8e-14 54.0 1.9 2e-14 53.9 0.3 1.9 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR58221.1 - 0.034 14.6 0.5 0.11 13.1 0.1 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GPAT_N PF14829.6 CQR58221.1 - 0.094 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase N-terminal CBM_35 PF16990.5 CQR58222.1 - 9.1e-45 151.8 28.7 3.6e-14 53.1 0.3 5.4 5 0 0 5 5 5 4 Carbohydrate binding module (family 35) CBM_6 PF03422.15 CQR58222.1 - 1.9e-32 112.2 33.8 3.2e-13 50.1 0.8 5.7 5 0 0 5 5 5 4 Carbohydrate binding module (family 6) SLH PF00395.20 CQR58222.1 - 8.3e-30 102.5 1.7 2.5e-11 43.4 0.9 3.7 3 0 0 3 3 3 3 S-layer homology domain Glyco_hydro_43 PF04616.14 CQR58222.1 - 3.4e-25 88.9 7.7 1.3e-24 87.0 7.7 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.6 CQR58222.1 - 2e-22 79.7 11.6 2.5e-12 47.3 0.0 4.4 4 1 0 4 4 3 2 Ricin-type beta-trefoil lectin domain-like DUF5010_C PF18099.1 CQR58222.1 - 1.8e-14 53.9 8.8 0.00041 20.5 0.1 5.6 5 0 0 5 5 5 4 DUF5010 C-terminal domain Flg_new PF09479.10 CQR58222.1 - 6.5e-12 45.4 0.6 3.3e-11 43.2 0.6 2.4 1 0 0 1 1 1 1 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ricin_B_lectin PF00652.22 CQR58222.1 - 9.5e-10 38.8 0.6 3e-09 37.2 0.7 1.9 2 0 0 2 2 1 1 Ricin-type beta-trefoil lectin domain Endotoxin_C PF03944.14 CQR58222.1 - 1.3e-07 32.0 18.2 0.052 13.9 1.0 5.1 5 0 0 5 5 5 3 delta endotoxin Ig_3 PF13927.6 CQR58222.1 - 8.4e-07 29.5 3.1 3.4e-05 24.4 0.0 4.7 6 0 0 6 6 4 1 Immunoglobulin domain Cadherin-like PF12733.7 CQR58222.1 - 0.00091 19.7 16.5 0.2 12.2 0.0 6.1 6 0 0 6 6 6 2 Cadherin-like beta sandwich domain DUF5625 PF18539.1 CQR58222.1 - 0.0044 17.3 0.0 0.28 11.5 0.0 3.1 3 0 0 3 3 2 1 Domain of unknown function (DUF5625) I-set PF07679.16 CQR58222.1 - 0.0092 16.0 0.0 0.14 12.3 0.0 3.1 2 0 0 2 2 2 1 Immunoglobulin I-set domain Glyco_hydro_42C PF08533.10 CQR58222.1 - 0.15 11.8 0.0 12 5.8 0.0 2.9 2 0 0 2 2 2 0 Beta-galactosidase C-terminal domain DUF3244 PF11589.8 CQR58222.1 - 0.23 11.6 3.0 27 4.9 0.1 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF3244) Big_3 PF07523.12 CQR58222.1 - 0.63 10.4 9.7 26 5.2 0.1 5.5 5 1 1 6 6 6 0 Bacterial Ig-like domain (group 3) DUF4432 PF14486.6 CQR58224.1 - 3.2e-20 72.1 0.0 1.3e-19 70.1 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4432) HAD_2 PF13419.6 CQR58225.1 - 2.5e-26 92.8 0.0 3.2e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR58225.1 - 9.8e-14 52.1 0.0 5.2e-13 49.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR58225.1 - 9.5e-07 28.8 0.0 1.7e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 CQR58225.1 - 0.00044 20.7 0.0 0.00066 20.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SKI PF01202.22 CQR58225.1 - 0.051 13.7 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase Glyco_hydro_65m PF03632.15 CQR58226.1 - 1.2e-105 353.5 0.1 1.7e-105 353.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR58226.1 - 6.2e-43 147.1 0.0 8.8e-43 146.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65C PF03633.15 CQR58226.1 - 4.8e-09 36.0 0.0 1.4e-08 34.5 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain BPD_transp_1 PF00528.22 CQR58227.1 - 1.8e-17 63.7 13.4 1.8e-17 63.7 13.4 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58228.1 - 1.3e-10 41.3 17.8 1.3e-10 41.3 17.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR58229.1 - 1.3e-30 107.5 12.8 1.8e-30 107.0 12.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58229.1 - 4.7e-30 105.4 13.4 7.3e-30 104.7 13.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR58229.1 - 0.00012 21.9 0.1 0.00033 20.5 0.1 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58229.1 - 0.00012 21.6 2.7 0.0069 15.8 2.7 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein His_kinase PF06580.13 CQR58230.1 - 1e-21 77.0 1.6 3.1e-21 75.5 0.7 2.3 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.26 CQR58230.1 - 2.3e-07 31.3 0.1 6.7e-07 29.8 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR58230.1 - 5.8e-07 29.8 1.4 1e-06 29.0 0.0 2.0 2 0 0 2 2 2 1 HAMP domain dCache_1 PF02743.18 CQR58230.1 - 1.7e-06 28.1 6.3 1.7e-06 28.1 6.3 1.9 3 0 0 3 3 3 1 Cache domain HATPase_c_2 PF13581.6 CQR58230.1 - 0.0063 16.5 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain FtsX PF02687.21 CQR58230.1 - 0.029 14.9 0.3 8 7.0 0.0 2.6 2 0 0 2 2 2 0 FtsX-like permease family DUF4994 PF16385.5 CQR58230.1 - 0.064 13.2 0.0 17 5.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function AI-2E_transport PF01594.16 CQR58230.1 - 0.065 12.4 3.2 0.8 8.8 0.5 2.5 2 0 0 2 2 2 0 AI-2E family transporter Tfb5 PF06331.12 CQR58230.1 - 0.093 12.7 1.1 0.18 11.8 0.2 1.9 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 Response_reg PF00072.24 CQR58231.1 - 9.4e-26 90.2 0.2 2.2e-25 89.0 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR58231.1 - 6.2e-20 70.8 0.1 1.8e-08 34.3 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR58231.1 - 1.4e-16 60.5 0.0 3.6e-16 59.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR58231.1 - 2.2e-08 34.3 0.0 7.7e-08 32.6 0.0 1.9 1 0 0 1 1 1 1 GGDEF-like domain MnmE_helical PF12631.7 CQR58231.1 - 0.01 16.0 0.2 0.063 13.4 0.1 2.0 1 1 0 1 1 1 0 MnmE helical domain AAA_9 PF12781.7 CQR58231.1 - 0.031 13.4 0.3 0.031 13.4 0.3 2.0 2 1 0 2 2 2 0 ATP-binding dynein motor region Dus PF01207.17 CQR58231.1 - 0.11 11.5 0.1 0.3 10.2 0.0 1.6 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Rrf2 PF02082.20 CQR58231.1 - 0.13 12.7 0.1 0.37 11.2 0.1 1.8 1 0 0 1 1 1 0 Transcriptional regulator UPF0122 PF04297.14 CQR58231.1 - 0.13 12.5 6.6 2.8 8.2 0.9 3.4 3 0 0 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like ETRAMP PF09716.10 CQR58233.1 - 2.3 8.3 4.2 17 5.5 0.5 2.7 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) ABC_tran PF00005.27 CQR58234.1 - 2.9e-30 105.5 0.0 5.7e-30 104.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58234.1 - 1.3e-10 41.6 0.0 9.6e-05 22.3 0.0 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR58234.1 - 0.00011 22.1 0.1 0.00032 20.6 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 CQR58234.1 - 0.00016 22.2 1.3 0.00041 20.9 1.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR58234.1 - 0.0033 17.1 0.1 0.0065 16.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR58234.1 - 0.0035 17.1 0.6 0.62 9.7 0.1 2.3 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 CQR58234.1 - 0.0047 16.4 0.1 2.9 7.3 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 CQR58234.1 - 0.07 13.3 0.0 0.32 11.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 CQR58234.1 - 0.079 12.8 0.2 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 MukB N-terminal DUF2813 PF11398.8 CQR58234.1 - 0.093 12.0 0.1 0.33 10.1 0.0 1.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2813) AAA_30 PF13604.6 CQR58234.1 - 0.098 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.6 CQR58236.1 - 3.5e-42 144.3 0.2 1e-26 93.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 CQR58236.1 - 6.1e-22 78.0 0.0 6.9e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 CQR58236.1 - 5.6e-09 35.8 0.0 9.9e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 CQR58236.1 - 1.7e-08 34.0 0.1 3.4e-08 33.0 0.0 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 CQR58236.1 - 1.9e-07 30.7 0.0 2.6e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 CQR58236.1 - 6.5e-07 29.1 0.0 9.4e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 CQR58236.1 - 4.5e-06 26.3 0.0 6.9e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 CQR58236.1 - 9.2e-05 21.9 0.1 0.00013 21.3 0.1 1.5 1 1 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 CQR58236.1 - 0.0017 18.0 0.2 0.0035 17.0 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 CQR58236.1 - 0.0022 17.0 0.0 0.0028 16.7 0.0 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF853 PF05872.12 CQR58236.1 - 0.0097 14.5 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) CLP1_P PF16575.5 CQR58236.1 - 0.013 15.3 0.2 0.031 14.1 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ResIII PF04851.15 CQR58236.1 - 0.024 14.7 0.1 0.037 14.0 0.1 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit LpxK PF02606.14 CQR58236.1 - 0.044 12.9 0.1 0.063 12.4 0.1 1.1 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_25 PF13481.6 CQR58236.1 - 0.054 13.1 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 CQR58236.1 - 0.1 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.19 CQR58236.1 - 0.12 10.5 0.1 0.17 10.0 0.1 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase CBM_6 PF03422.15 CQR58237.1 - 1.3e-29 103.0 5.7 1.3e-29 103.0 5.7 4.9 4 1 1 5 5 5 1 Carbohydrate binding module (family 6) Glyco_hydro_28 PF00295.17 CQR58237.1 - 6.9e-12 45.1 4.4 6.9e-12 45.1 4.4 3.2 3 1 0 3 3 3 2 Glycosyl hydrolases family 28 DUF5010_C PF18099.1 CQR58237.1 - 3.4e-06 27.1 0.6 3.4e-06 27.1 0.6 3.1 3 1 1 4 4 4 1 DUF5010 C-terminal domain Inhibitor_I42 PF09394.10 CQR58237.1 - 0.96 9.9 6.1 2.8 8.4 1.5 3.3 2 1 0 2 2 2 0 Chagasin family peptidase inhibitor I42 NTF-like PF14540.6 CQR58238.1 - 1.6e-22 79.4 0.0 3.8e-22 78.3 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase-like HTH_52 PF18576.1 CQR58238.1 - 3.3e-05 24.0 0.0 7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2614 PF11023.8 CQR58239.1 - 7.1e-30 103.4 0.9 8.6e-30 103.1 0.9 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain Cytochrome_C7 PF14522.6 CQR58239.1 - 0.0053 16.7 0.7 0.0079 16.2 0.7 1.2 1 0 0 1 1 1 1 Cytochrome c7 and related cytochrome c Cytochrom_CIII PF02085.16 CQR58239.1 - 0.0057 17.0 0.6 0.0075 16.6 0.6 1.1 1 0 0 1 1 1 1 Class III cytochrome C family DUF2207 PF09972.9 CQR58239.1 - 0.011 14.6 2.9 0.012 14.4 2.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DnaJ_CXXCXGXG PF00684.19 CQR58239.1 - 0.066 13.6 0.2 0.097 13.0 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain Cytochrom_c3_2 PF14537.6 CQR58239.1 - 0.068 13.7 1.1 0.096 13.2 1.1 1.2 1 0 0 1 1 1 0 Cytochrome c3 DUF2721 PF11026.8 CQR58239.1 - 1.1 9.1 9.1 2.9 7.8 9.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) Cytochrom_NNT PF03264.14 CQR58239.1 - 1.4 8.6 6.7 8.7 6.0 0.1 2.8 1 1 2 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region Glyco_hydro_18 PF00704.28 CQR58240.1 - 4.9e-28 98.8 0.4 7.8e-28 98.1 0.4 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 Cu_amine_oxidN1 PF07833.11 CQR58240.1 - 2.1e-09 37.8 0.0 7.3e-09 36.0 0.0 2.0 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain SH3_3 PF08239.11 CQR58240.1 - 4.3e-05 23.7 0.2 0.00026 21.2 0.0 2.4 3 0 0 3 3 3 1 Bacterial SH3 domain SH3_4 PF06347.13 CQR58240.1 - 7.4e-05 22.5 0.2 0.00031 20.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial SH3 domain SH3_9 PF14604.6 CQR58240.1 - 0.05 13.5 0.1 0.16 11.9 0.1 1.9 1 0 0 1 1 1 0 Variant SH3 domain FUR PF01475.19 CQR58241.1 - 1.6e-38 131.5 0.0 1.9e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Cytochrom_C550 PF14495.6 CQR58241.1 - 0.039 13.7 0.0 0.058 13.1 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c-550 domain HTH_5 PF01022.20 CQR58241.1 - 0.088 12.7 0.0 0.28 11.1 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4097 PF13349.6 CQR58242.1 - 4.4e-16 59.0 2.5 2.8e-14 53.1 3.0 2.4 1 1 0 1 1 1 1 Putative adhesin DUF2154 PF09922.9 CQR58242.1 - 0.0093 15.8 0.0 0.45 10.4 0.0 2.8 2 0 0 2 2 2 1 Cell wall-active antibiotics response 4TMS YvqF LPG_synthase_TM PF03706.13 CQR58242.1 - 0.098 12.2 19.8 0.22 11.0 11.3 2.4 2 0 0 2 2 2 0 Lysylphosphatidylglycerol synthase TM region DUF4043 PF13252.6 CQR58242.1 - 0.11 11.6 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4043) Tmemb_14 PF03647.13 CQR58242.1 - 0.47 11.2 8.3 3.6 8.4 0.8 2.9 3 0 0 3 3 3 0 Transmembrane proteins 14C SirB PF04247.12 CQR58242.1 - 0.59 10.2 5.1 0.62 10.2 0.7 2.6 1 1 1 2 2 2 0 Invasion gene expression up-regulator, SirB FA_desaturase PF00487.24 CQR58242.1 - 6.5 6.5 8.6 4 7.2 3.5 2.3 2 0 0 2 2 2 0 Fatty acid desaturase Acetyltransf_10 PF13673.7 CQR58243.1 - 2.3e-11 43.7 0.0 3e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR58243.1 - 4.7e-09 36.5 0.0 7.8e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR58243.1 - 2.6e-08 34.1 0.0 3.3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PanZ PF12568.8 CQR58243.1 - 0.00062 19.5 0.0 0.00074 19.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 CQR58243.1 - 0.022 15.4 0.0 0.027 15.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR58243.1 - 0.042 13.8 0.0 0.15 12.0 0.0 1.9 2 1 0 2 2 2 0 FR47-like protein Acetyltransf_CG PF14542.6 CQR58243.1 - 0.093 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GatB_N PF02934.15 CQR58244.1 - 2.9e-113 377.8 0.0 3.7e-113 377.5 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 CQR58244.1 - 1.2e-55 187.5 0.2 1.7e-55 187.0 0.2 1.2 1 0 0 1 1 1 1 GatB domain Amidase PF01425.21 CQR58245.1 - 3.8e-158 527.2 0.0 4.3e-158 527.0 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 CQR58246.1 - 2.8e-24 85.2 1.8 3.7e-24 84.8 1.8 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Plant_NMP1 PF06694.11 CQR58246.1 - 0.0085 15.2 0.1 0.0099 15.0 0.1 1.1 1 0 0 1 1 1 1 Plant nuclear matrix protein 1 (NMP1) Glyco_hydro_25 PF01183.20 CQR58247.1 - 0.085 13.0 0.4 0.17 12.1 0.1 1.5 1 1 1 2 2 2 0 Glycosyl hydrolases family 25 IDEAL PF08858.10 CQR58247.1 - 0.11 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 IDEAL domain ABC2_membrane_2 PF12679.7 CQR58248.1 - 2.1e-14 53.5 20.1 1.2e-13 51.0 20.1 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR58248.1 - 0.0004 19.6 8.5 0.0004 19.6 8.5 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR58248.1 - 0.00056 19.9 2.6 0.00056 19.9 2.6 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR58248.1 - 0.0021 17.7 3.2 0.0021 17.7 3.2 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein YtpI PF14007.6 CQR58248.1 - 1.5 9.0 5.1 8.1 6.7 0.0 3.5 4 0 0 4 4 4 0 YtpI-like protein ABC_tran PF00005.27 CQR58249.1 - 2.6e-32 112.2 0.0 7.1e-32 110.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR58249.1 - 5.5e-12 46.1 0.4 5.6e-06 26.4 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 CQR58249.1 - 3.4e-06 27.7 0.0 5.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_22 PF13401.6 CQR58249.1 - 0.00011 22.5 0.0 0.00043 20.6 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 CQR58249.1 - 0.0046 17.5 0.0 0.0076 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CQR58249.1 - 0.0053 17.0 0.0 0.039 14.2 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 CQR58249.1 - 0.0088 15.8 0.1 0.022 14.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 CQR58249.1 - 0.0094 15.7 0.7 0.035 13.8 0.3 2.1 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 CQR58249.1 - 0.012 15.3 0.3 0.023 14.3 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 CQR58249.1 - 0.018 14.5 0.0 5 6.5 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR58249.1 - 0.018 15.4 0.1 0.037 14.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 CQR58249.1 - 0.025 15.1 0.2 0.79 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 CQR58249.1 - 0.038 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR58249.1 - 0.046 13.4 0.0 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR58249.1 - 0.089 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 CQR58249.1 - 0.1 13.0 0.0 0.22 11.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 CQR58249.1 - 0.12 12.1 0.7 2.4 7.9 0.1 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_27 PF13514.6 CQR58249.1 - 0.12 11.9 0.1 0.32 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 CQR58249.1 - 0.13 12.5 1.1 0.2 11.9 0.3 1.7 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 CQR58249.1 - 0.47 10.3 1.8 0.88 9.5 0.2 2.1 3 0 0 3 3 2 0 NACHT domain PLDc_N PF13396.6 CQR58250.1 - 1.3e-09 37.8 2.4 2e-09 37.2 2.4 1.3 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal FAM70 PF14967.6 CQR58250.1 - 0.074 12.5 0.2 0.085 12.3 0.2 1.0 1 0 0 1 1 1 0 FAM70 protein PBP_N PF17093.5 CQR58250.1 - 2.8 8.2 5.1 2.8 8.2 0.9 2.0 1 1 1 2 2 2 0 Penicillin-binding protein N-terminus BatA PF07584.11 CQR58251.1 - 4.3 7.8 6.0 24 5.4 0.9 2.1 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal DUF5345 PF17280.2 CQR58252.1 - 6.9e-24 83.6 0.1 9.5e-24 83.2 0.1 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5345) DUF3040 PF11239.8 CQR58252.1 - 0.0073 16.6 0.9 0.013 15.8 0.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) NapE PF06796.11 CQR58252.1 - 0.011 15.3 1.6 0.024 14.1 1.6 1.6 1 1 0 1 1 1 0 Periplasmic nitrate reductase protein NapE YwiC PF14256.6 CQR58252.1 - 0.021 15.1 2.3 0.027 14.8 2.3 1.1 1 0 0 1 1 1 0 YwiC-like protein DUF3270 PF11674.8 CQR58252.1 - 0.032 14.4 0.1 0.042 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) FA_desaturase PF00487.24 CQR58252.1 - 0.13 12.0 0.1 0.15 11.8 0.1 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF677 PF05055.12 CQR58252.1 - 0.15 10.9 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF2116 PF09889.9 CQR58252.1 - 0.22 11.6 0.5 0.35 10.9 0.5 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) FAM70 PF14967.6 CQR58252.1 - 0.23 10.9 0.2 0.3 10.5 0.2 1.1 1 0 0 1 1 1 0 FAM70 protein Sigma70_r2 PF04542.14 CQR58253.1 - 1.5e-14 53.5 0.4 7.7e-14 51.2 0.1 2.0 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR58253.1 - 8.7e-13 47.7 0.0 1.4e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR58253.1 - 2.3e-08 33.4 0.0 4.5e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR58253.1 - 4e-06 26.8 0.5 8.2e-06 25.8 0.5 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_16 PF12645.7 CQR58253.1 - 0.0036 17.3 2.5 0.0076 16.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Xin PF08043.12 CQR58253.1 - 0.073 12.7 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Xin repeat Lactamase_B PF00753.27 CQR58255.1 - 5.4e-28 98.3 0.3 6.6e-28 98.1 0.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR58255.1 - 7.6e-10 38.6 0.0 9.9e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 CQR58255.1 - 0.00021 21.2 0.0 0.00025 21.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 CQR58255.1 - 0.15 11.5 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Thioredoxin_9 PF14595.6 CQR58256.1 - 2.7e-41 140.4 0.0 3.5e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin SNARE_assoc PF09335.11 CQR58257.1 - 8.4e-28 97.3 5.7 8.4e-28 97.3 5.7 1.9 2 0 0 2 2 2 1 SNARE associated Golgi protein FeoB_associated PF12669.7 CQR58257.1 - 0.025 15.0 0.8 0.025 15.0 0.8 2.4 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein SKG6 PF08693.10 CQR58257.1 - 0.044 13.2 1.0 0.15 11.5 1.0 1.9 1 0 0 1 1 1 0 Transmembrane alpha-helix domain MscS_TM PF12794.7 CQR58257.1 - 0.12 11.3 2.4 0.26 10.1 0.1 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 HTH_5 PF01022.20 CQR58258.1 - 1.5e-18 66.4 0.0 2.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR58258.1 - 9e-17 60.9 0.0 1.2e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 CQR58258.1 - 2.2e-09 37.1 0.0 3.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 CQR58258.1 - 6e-07 29.2 0.0 8.4e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 CQR58258.1 - 1.1e-05 25.2 0.0 1.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 CQR58258.1 - 1.8e-05 24.5 0.0 2.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 CQR58258.1 - 2.5e-05 24.2 0.0 3.7e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR58258.1 - 5.7e-05 22.6 0.0 0.00012 21.5 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 CQR58258.1 - 0.00041 20.0 0.0 0.0006 19.4 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.6 CQR58258.1 - 0.00062 20.2 0.0 0.0011 19.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 CQR58258.1 - 0.0021 17.9 0.0 0.0034 17.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 CQR58258.1 - 0.0027 17.2 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR58258.1 - 0.0065 16.2 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 CQR58258.1 - 0.0068 16.7 0.0 0.01 16.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_38 PF13936.6 CQR58258.1 - 0.0095 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 CQR58258.1 - 0.014 15.6 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 CQR58258.1 - 0.022 14.6 0.0 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 LexA DNA binding domain UPF0122 PF04297.14 CQR58258.1 - 0.023 14.9 0.0 0.028 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_10 PF04967.12 CQR58258.1 - 0.025 14.4 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.6 CQR58258.1 - 0.039 14.1 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 CQR58258.1 - 0.043 13.5 0.1 0.07 12.8 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DUF2250 PF10007.9 CQR58258.1 - 0.098 12.8 0.8 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.12 CQR58258.1 - 0.12 12.5 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.6 CQR58258.1 - 0.17 11.9 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix ArsR PF09824.9 CQR58258.1 - 0.18 11.4 0.0 0.25 11.0 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator SdpI PF13630.6 CQR58259.1 - 7.4e-21 74.1 2.8 7.4e-21 74.1 2.8 3.0 3 2 0 3 3 3 1 SdpI/YhfL protein family DUF1648 PF07853.11 CQR58259.1 - 3.5e-13 49.0 0.0 3.5e-13 49.0 0.0 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) DUF2105 PF09878.9 CQR58259.1 - 0.13 11.9 5.9 0.23 11.2 5.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2105) Peptidase_U4 PF03419.13 CQR58259.1 - 0.29 10.4 8.9 0.45 9.8 8.9 1.3 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4491 PF14898.6 CQR58259.1 - 9 6.8 8.0 88 3.6 5.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4491) Wzy_C PF04932.15 CQR58260.1 - 3.2e-13 49.6 9.0 3.2e-13 49.6 9.0 3.6 2 2 0 2 2 2 1 O-Antigen ligase Methyltransf_32 PF13679.6 CQR58261.1 - 6.7e-37 126.9 0.0 1.3e-36 126.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR58261.1 - 7.3e-15 55.1 0.0 1.3e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR58261.1 - 8.9e-09 35.9 0.1 1.7e-08 35.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR58261.1 - 1e-05 26.1 0.1 2e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58261.1 - 3.7e-05 24.4 0.1 7.8e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain TRM13 PF05206.14 CQR58261.1 - 0.00034 20.2 0.3 0.054 13.0 0.2 2.3 1 1 1 2 2 2 2 Methyltransferase TRM13 Ubie_methyltran PF01209.18 CQR58261.1 - 0.0051 16.2 0.0 0.024 14.0 0.0 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 CQR58261.1 - 0.037 13.6 0.0 0.075 12.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain HTH_20 PF12840.7 CQR58263.1 - 8.5e-10 38.6 0.1 1.4e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR58263.1 - 1.6e-08 34.3 0.1 3e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 CQR58263.1 - 0.00044 19.7 0.0 0.00071 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 CQR58263.1 - 0.00097 19.0 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 CQR58263.1 - 0.031 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.10 CQR58263.1 - 0.05 13.4 0.0 0.08 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GerE PF00196.19 CQR58263.1 - 0.057 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MFS_1 PF07690.16 CQR58264.1 - 8.6e-30 103.8 44.4 8.6e-30 103.8 44.4 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 CQR58264.1 - 2.4e-25 88.9 32.3 1.1e-24 86.7 32.3 1.8 1 1 0 1 1 1 1 Transmembrane secretion effector PMP1_2 PF08114.11 CQR58264.1 - 2.6 7.8 6.9 2.4 8.0 3.7 2.8 1 1 1 2 2 2 0 ATPase proteolipid family Abhydrolase_1 PF00561.20 CQR58265.1 - 3.2e-26 92.5 0.2 9.6e-24 84.4 0.3 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR58265.1 - 4e-24 86.4 0.2 4.7e-24 86.2 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CQR58265.1 - 6.2e-19 68.2 0.1 1.4e-15 57.2 0.1 2.0 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Ndr PF03096.14 CQR58265.1 - 2.2e-08 33.2 0.0 4.2e-08 32.2 0.0 1.3 1 1 0 1 1 1 1 Ndr family Abhydrolase_5 PF12695.7 CQR58265.1 - 6.5e-07 29.3 0.0 2.5e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase family Thioesterase PF00975.20 CQR58265.1 - 7.7e-07 29.5 0.0 1.1e-06 29.0 0.0 1.2 1 1 0 1 1 1 1 Thioesterase domain LIDHydrolase PF10230.9 CQR58265.1 - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Lipid-droplet associated hydrolase Chlorophyllase2 PF12740.7 CQR58265.1 - 0.0019 17.2 0.0 0.02 13.8 0.0 2.3 2 1 0 2 2 2 1 Chlorophyllase enzyme UPF0227 PF05728.12 CQR58265.1 - 0.021 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Chlorophyllase PF07224.11 CQR58265.1 - 0.023 13.7 0.0 0.089 11.8 0.1 1.9 2 1 0 2 2 2 0 Chlorophyllase Peptidase_S9 PF00326.21 CQR58265.1 - 0.024 14.1 0.0 6.3 6.2 0.0 2.5 3 0 0 3 3 3 0 Prolyl oligopeptidase family Esterase PF00756.20 CQR58265.1 - 0.21 11.2 0.2 3.1 7.4 0.0 2.3 3 0 0 3 3 3 0 Putative esterase DUF1256 PF06866.11 CQR58266.1 - 4.7e-35 120.4 0.0 5.6e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1256) DUF1128 PF06569.11 CQR58267.1 - 1.4e-28 98.7 0.4 1.5e-28 98.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1128) Pirin PF02678.16 CQR58268.1 - 5e-31 106.9 1.3 1.2e-30 105.6 1.2 1.6 2 0 0 2 2 2 1 Pirin Pirin_C_2 PF17954.1 CQR58268.1 - 6.8e-14 51.8 0.1 2.2e-13 50.2 0.0 1.9 2 1 0 2 2 2 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 CQR58268.1 - 4.9e-11 42.2 0.9 3.5e-05 23.4 1.4 2.7 2 0 0 2 2 2 2 Cupin domain Cupin_3 PF05899.12 CQR58268.1 - 0.0002 21.0 0.0 0.81 9.4 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF861) Pirin_C PF05726.13 CQR58268.1 - 0.023 15.0 0.0 5.8 7.3 0.0 2.5 2 1 1 3 3 3 0 Pirin C-terminal cupin domain ATP-synt_DE_N PF02823.16 CQR58268.1 - 0.076 12.9 0.0 0.31 11.0 0.0 1.9 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BPD_transp_1 PF00528.22 CQR58269.1 - 1e-15 58.0 14.0 1e-15 58.0 14.0 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58270.1 - 1.2e-20 74.0 14.7 1.2e-20 74.0 14.7 2.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 CQR58270.1 - 0.1 12.7 0.4 0.21 11.7 0.4 1.5 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters DUF5392 PF17370.2 CQR58270.1 - 0.41 10.7 4.2 12 6.0 0.0 3.0 3 0 0 3 3 3 0 Family of unknown function (DUF5392) SBP_bac_8 PF13416.6 CQR58271.1 - 3.8e-45 154.9 5.1 5.4e-45 154.4 5.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR58271.1 - 8.2e-32 111.4 10.8 1.1e-31 110.9 10.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR58271.1 - 0.0029 17.4 0.1 0.013 15.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Alpha-amylase PF00128.24 CQR58272.1 - 6.3e-79 266.0 0.0 9.1e-79 265.5 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 CQR58272.1 - 2e-37 128.0 0.1 4.2e-37 127.0 0.1 1.5 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain Malt_amylase_C PF16657.5 CQR58272.1 - 3.8e-07 30.1 0.0 7.5e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain GHL6 PF14871.6 CQR58272.1 - 0.0018 18.4 0.0 0.0049 17.0 0.0 1.8 1 1 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 DUF3459 PF11941.8 CQR58272.1 - 0.024 14.9 0.0 0.051 13.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) YtxH PF12732.7 CQR58273.1 - 2e-19 69.9 18.3 8.3e-14 51.9 18.3 2.7 1 1 0 1 1 1 1 YtxH-like protein Apolipoprotein PF01442.18 CQR58273.1 - 9.5e-06 25.6 2.5 1.9e-05 24.6 2.5 1.4 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Virulence_fact PF13769.6 CQR58273.1 - 0.0078 16.4 2.8 0.49 10.7 0.1 2.5 1 1 1 2 2 2 1 Virulence factor ApoC-I PF04691.12 CQR58273.1 - 0.036 14.0 5.9 0.44 10.5 0.3 3.4 1 1 1 3 3 3 0 Apolipoprotein C-I (ApoC-1) Fzo_mitofusin PF04799.13 CQR58273.1 - 0.07 12.7 0.4 0.19 11.2 0.1 1.7 1 1 1 2 2 2 0 fzo-like conserved region ApoLp-III PF07464.11 CQR58273.1 - 0.076 13.1 9.7 0.17 12.0 9.7 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Oleosin PF01277.17 CQR58273.1 - 0.091 12.5 0.7 14 5.5 0.0 2.6 2 1 1 3 3 3 0 Oleosin Gp-FAR-1 PF05823.12 CQR58273.1 - 0.12 12.7 3.5 0.13 12.6 0.2 2.0 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Phasin_2 PF09361.10 CQR58273.1 - 0.15 12.3 8.9 0.29 11.4 6.6 2.2 1 1 1 2 2 2 0 Phasin protein DUF883 PF05957.13 CQR58273.1 - 0.24 12.0 10.9 0.72 10.5 0.7 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Prominin PF05478.11 CQR58273.1 - 0.3 9.0 1.1 0.37 8.7 1.1 1.2 1 0 0 1 1 1 0 Prominin GldM_N PF12081.8 CQR58273.1 - 0.58 10.2 11.0 3 7.9 11.0 1.8 1 1 0 1 1 1 0 GldM N-terminal domain REF PF05755.12 CQR58273.1 - 0.6 9.9 5.0 0.88 9.3 4.4 1.5 1 1 0 1 1 1 0 Rubber elongation factor protein (REF) Synuclein PF01387.17 CQR58273.1 - 1.2 9.3 15.3 1 9.6 4.7 2.2 1 1 1 2 2 2 0 Synuclein DUF725 PF05267.12 CQR58273.1 - 2.6 8.1 6.3 5.8 6.9 0.6 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF725) Rax2 PF12768.7 CQR58274.1 - 0.036 13.5 0.0 0.038 13.4 0.0 1.1 1 0 0 1 1 1 0 Cortical protein marker for cell polarity Sigma70_r4 PF04545.16 CQR58275.1 - 1.3e-14 53.4 4.9 3.4e-13 48.9 1.7 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CQR58275.1 - 1.1e-11 44.3 0.0 3.1e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r3 PF04539.16 CQR58275.1 - 9.5e-11 41.6 1.8 8.2e-10 38.7 0.4 2.6 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 CQR58275.1 - 8.7e-09 34.9 0.7 8.7e-09 34.9 0.7 2.4 3 0 0 3 3 2 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR58275.1 - 1e-08 34.7 0.2 2.6e-08 33.4 0.2 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 CQR58275.1 - 2.1e-05 24.2 0.0 7.1e-05 22.5 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 CQR58275.1 - 7.2e-05 22.3 0.5 0.00047 19.6 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_ECF PF07638.11 CQR58275.1 - 0.00041 20.3 2.6 0.0093 15.9 0.7 2.3 2 0 0 2 2 2 1 ECF sigma factor KORA PF16509.5 CQR58275.1 - 0.00044 20.5 1.3 0.0011 19.3 1.3 1.6 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_50 PF18024.1 CQR58275.1 - 0.00064 19.3 0.2 0.014 15.0 0.0 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain Cyclophil_like2 PF18050.1 CQR58275.1 - 0.0019 18.2 0.2 0.056 13.4 0.0 2.9 2 1 2 4 4 4 1 Cyclophilin-like family DUF1492 PF07374.11 CQR58275.1 - 0.0023 18.0 0.6 0.0052 16.9 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1492) HTH_Tnp_ISL3 PF13542.6 CQR58275.1 - 0.0026 17.1 0.0 0.0071 15.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 CQR58275.1 - 0.005 16.4 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 CQR58275.1 - 0.005 16.9 0.1 0.012 15.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TnsD PF15978.5 CQR58275.1 - 0.0096 14.9 1.1 0.059 12.3 0.3 2.3 3 0 0 3 3 3 1 Tn7-like transposition protein D MarR_2 PF12802.7 CQR58275.1 - 0.013 15.4 0.8 0.039 13.8 0.2 2.1 2 0 0 2 2 2 0 MarR family Phage_antitermQ PF06530.12 CQR58275.1 - 0.013 15.4 0.4 0.029 14.3 0.3 1.7 2 0 0 2 2 1 0 Phage antitermination protein Q HTH_Crp_2 PF13545.6 CQR58275.1 - 0.013 15.4 0.8 1.9 8.5 0.1 3.0 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain YdaS_antitoxin PF15943.5 CQR58275.1 - 0.015 15.1 0.1 0.044 13.7 0.1 1.8 2 0 0 2 2 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_31 PF13560.6 CQR58275.1 - 0.025 14.9 1.4 0.47 10.8 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 CQR58275.1 - 0.025 14.5 0.1 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_3 PF01381.22 CQR58275.1 - 0.046 13.8 0.7 0.26 11.4 0.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix Trp_repressor PF01371.19 CQR58275.1 - 0.051 13.7 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 Trp repressor protein HTH_29 PF13551.6 CQR58275.1 - 0.059 13.4 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.12 CQR58275.1 - 0.068 13.0 0.6 0.3 10.9 0.4 2.3 2 1 0 2 2 2 0 HTH DNA binding domain HATPase_c_2 PF13581.6 CQR58276.1 - 1.7e-23 82.9 0.0 2e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 CQR58276.1 - 1.6e-06 28.6 0.1 2.1e-06 28.2 0.1 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3655 PF12379.8 CQR58276.1 - 0.0035 17.6 0.2 0.12 12.7 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3655) STAS_2 PF13466.6 CQR58277.1 - 2.5e-11 43.8 0.0 2.8e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 CQR58277.1 - 1.5e-08 34.3 0.0 1.8e-08 34.0 0.0 1.0 1 0 0 1 1 1 1 STAS domain Response_reg PF00072.24 CQR58278.1 - 1.8e-53 179.4 2.4 2.3e-26 92.2 0.4 2.5 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 CQR58278.1 - 7.7e-31 106.9 0.1 1.6e-30 105.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58278.1 - 6.3e-20 71.0 0.1 1.7e-19 69.6 0.0 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR58278.1 - 1.2e-05 25.2 0.0 2.5e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.15 CQR58278.1 - 0.0045 17.2 0.0 0.016 15.5 0.0 1.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain FleQ PF06490.11 CQR58278.1 - 0.024 15.0 0.4 6.9 7.1 0.0 2.9 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ GRIP PF01465.20 CQR58278.1 - 0.08 12.9 0.0 0.26 11.2 0.0 1.9 1 0 0 1 1 1 0 GRIP domain CheR PF01739.18 CQR58279.1 - 2.2e-41 141.5 0.0 3.3e-41 140.9 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 CQR58279.1 - 1.2e-09 37.7 0.2 3.6e-09 36.2 0.0 1.9 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_31 PF13847.6 CQR58279.1 - 0.0038 17.0 0.2 0.051 13.4 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR58279.1 - 0.0066 17.1 0.2 2.2 9.0 0.0 2.9 2 1 0 3 3 3 1 Methyltransferase domain Response_reg PF00072.24 CQR58280.1 - 1.6e-63 211.8 16.7 1.1e-28 99.6 0.9 4.3 4 0 0 4 4 4 3 Response regulator receiver domain HATPase_c PF02518.26 CQR58280.1 - 1.3e-28 99.8 0.0 2.9e-28 98.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 4HB_MCP_1 PF12729.7 CQR58280.1 - 4.7e-19 68.6 12.9 4.7e-19 68.6 12.9 2.8 2 0 0 2 2 2 1 Four helix bundle sensory module for signal transduction HisKA PF00512.25 CQR58280.1 - 1.9e-15 56.6 0.2 1.9e-15 56.6 0.2 5.1 5 1 0 5 5 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 CQR58280.1 - 5.7e-15 55.8 0.0 1.7e-14 54.3 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 CQR58280.1 - 1.7e-07 31.9 0.0 4.3e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain HAMP PF00672.25 CQR58280.1 - 0.00021 21.6 0.0 0.00085 19.7 0.0 2.2 1 0 0 1 1 1 1 HAMP domain Spc7 PF08317.11 CQR58280.1 - 0.00036 19.5 24.8 0.00036 19.5 24.8 3.0 3 0 0 3 3 3 1 Spc7 kinetochore protein ERM PF00769.19 CQR58280.1 - 0.0013 18.6 22.1 0.0013 18.6 22.1 2.9 3 0 0 3 3 3 1 Ezrin/radixin/moesin family TarH PF02203.15 CQR58280.1 - 0.0017 18.3 6.8 0.0017 18.3 6.8 3.2 3 1 0 3 3 3 1 Tar ligand binding domain homologue NPV_P10 PF05531.12 CQR58280.1 - 1.7 9.1 13.7 2 8.9 2.5 4.2 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Borrelia_P83 PF05262.11 CQR58280.1 - 4 5.8 20.8 0.0084 14.7 9.7 2.1 3 0 0 3 3 3 0 Borrelia P83/100 protein DUF2207 PF09972.9 CQR58280.1 - 5 5.8 6.2 0.38 9.5 0.3 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) SpoIIE PF07228.12 CQR58281.1 - 9.7e-32 110.4 0.0 1.3e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Response_reg PF00072.24 CQR58281.1 - 3.1e-28 98.2 1.8 5.7e-28 97.3 1.8 1.5 1 0 0 1 1 1 1 Response regulator receiver domain MR_MLE_C PF13378.6 CQR58281.1 - 0.14 11.7 0.7 0.89 9.1 0.1 2.1 2 0 0 2 2 2 0 Enolase C-terminal domain-like YflT PF11181.8 CQR58282.1 - 9.1e-28 96.7 0.2 1e-27 96.5 0.2 1.0 1 0 0 1 1 1 1 Heat induced stress protein YflT DUF948 PF06103.11 CQR58284.1 - 1.4e-25 89.3 5.2 1.4e-25 89.3 5.2 1.6 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 CQR58284.1 - 6.9e-05 22.9 9.7 0.00013 22.0 5.5 2.0 2 0 0 2 2 2 1 Laminin Domain II MCPsignal PF00015.21 CQR58284.1 - 9.1e-05 22.3 2.8 0.00014 21.8 2.8 1.3 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain TssO PF17561.2 CQR58284.1 - 0.00019 21.6 3.3 0.00022 21.3 3.3 1.1 1 0 0 1 1 1 1 Type VI secretion system, TssO Allexi_40kDa PF05549.11 CQR58284.1 - 0.0011 18.6 0.6 0.0013 18.3 0.6 1.0 1 0 0 1 1 1 1 Allexivirus 40kDa protein Zw10 PF06248.13 CQR58284.1 - 0.0015 17.2 4.5 0.0018 17.0 4.5 1.0 1 0 0 1 1 1 1 Centromere/kinetochore Zw10 Snapin_Pallidin PF14712.6 CQR58284.1 - 0.0018 18.6 4.0 0.0019 18.6 3.0 1.5 1 1 0 1 1 1 1 Snapin/Pallidin T3SSipB PF16535.5 CQR58284.1 - 0.0027 18.2 2.6 0.0039 17.7 2.6 1.4 1 1 0 1 1 1 1 Type III cell invasion protein SipB V_ATPase_I PF01496.19 CQR58284.1 - 0.0027 15.7 2.2 0.0031 15.5 2.2 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family OPA3 PF07047.12 CQR58284.1 - 0.0052 16.6 0.9 1.2 8.9 0.1 2.1 2 0 0 2 2 2 1 Optic atrophy 3 protein (OPA3) HemX PF04375.14 CQR58284.1 - 0.0056 16.0 0.9 0.0065 15.8 0.9 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase DUF3450 PF11932.8 CQR58284.1 - 0.009 15.3 2.6 0.01 15.1 1.2 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Chlorosome_CsmC PF11098.8 CQR58284.1 - 0.0092 16.0 0.5 0.017 15.1 0.5 1.6 1 0 0 1 1 1 1 Chlorosome envelope protein C Baculo_PEP_C PF04513.12 CQR58284.1 - 0.0098 15.9 2.3 0.015 15.4 2.3 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 CQR58284.1 - 0.0099 16.2 5.3 0.065 13.5 3.9 2.4 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fzo_mitofusin PF04799.13 CQR58284.1 - 0.012 15.1 1.2 0.012 15.1 1.2 1.7 1 1 1 2 2 2 0 fzo-like conserved region ALIX_LYPXL_bnd PF13949.6 CQR58284.1 - 0.015 14.6 2.8 0.019 14.2 2.8 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV GCN5L1 PF06320.13 CQR58284.1 - 0.017 15.3 5.5 0.083 13.0 0.9 2.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Laminin_I PF06008.14 CQR58284.1 - 0.018 14.7 4.8 0.099 12.3 4.7 2.1 1 1 0 1 1 1 0 Laminin Domain I YabA PF06156.13 CQR58284.1 - 0.018 15.7 4.2 1.2 9.8 0.2 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DHR10 PF18595.1 CQR58284.1 - 0.03 14.4 1.8 0.03 14.4 1.8 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain AI-2E_transport PF01594.16 CQR58284.1 - 0.032 13.4 2.5 0.042 13.0 2.5 1.1 1 0 0 1 1 1 0 AI-2E family transporter SesA PF17107.5 CQR58284.1 - 0.036 14.3 4.6 0.059 13.6 4.1 1.6 1 1 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases AbiEi_3_N PF17194.4 CQR58284.1 - 0.039 14.0 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain COG2 PF06148.11 CQR58284.1 - 0.042 13.9 2.7 0.055 13.6 1.3 1.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.12 CQR58284.1 - 0.047 13.7 5.9 0.086 12.9 5.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Prominin PF05478.11 CQR58284.1 - 0.048 11.6 1.9 0.056 11.4 1.9 1.1 1 0 0 1 1 1 0 Prominin RecG_N PF17190.4 CQR58284.1 - 0.061 14.0 0.4 0.11 13.3 0.4 1.3 1 0 0 1 1 1 0 RecG N-terminal helical domain UPF0242 PF06785.11 CQR58284.1 - 0.071 13.2 5.0 0.78 9.8 5.0 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ExbD PF02472.16 CQR58284.1 - 0.074 13.2 5.6 0.15 12.2 5.5 1.6 1 1 0 1 1 1 0 Biopolymer transport protein ExbD/TolR Vps53_N PF04100.12 CQR58284.1 - 0.075 12.0 5.7 0.1 11.5 5.7 1.4 1 1 0 1 1 1 0 Vps53-like, N-terminal DUF2203 PF09969.9 CQR58284.1 - 0.082 13.6 3.1 0.094 13.4 1.7 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) zf-C4H2 PF10146.9 CQR58284.1 - 0.1 12.9 2.3 0.13 12.5 2.3 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DASH_Duo1 PF08651.10 CQR58284.1 - 0.12 12.1 2.6 1 9.2 1.4 2.4 1 1 1 2 2 2 0 DASH complex subunit Duo1 TMPIT PF07851.13 CQR58284.1 - 0.14 11.4 2.0 0.17 11.1 2.0 1.3 1 0 0 1 1 1 0 TMPIT-like protein Tweety PF04906.13 CQR58284.1 - 0.18 10.5 2.0 0.23 10.1 2.0 1.2 1 0 0 1 1 1 0 Tweety COG5 PF10392.9 CQR58284.1 - 0.23 11.6 5.9 0.58 10.3 5.9 1.5 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Mt_ATP-synt_B PF05405.14 CQR58284.1 - 0.28 10.8 6.6 0.2 11.3 2.1 2.1 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) DUF4577 PF15145.6 CQR58284.1 - 0.3 11.1 3.1 0.24 11.4 1.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4577) Fib_alpha PF08702.10 CQR58284.1 - 0.3 11.2 6.3 0.23 11.6 4.3 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family YtxH PF12732.7 CQR58284.1 - 0.33 11.5 7.9 0.15 12.6 2.1 2.4 1 1 1 2 2 2 0 YtxH-like protein PhaP_Bmeg PF09602.10 CQR58284.1 - 0.34 10.8 5.9 0.7 9.8 5.9 1.5 1 1 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF4446 PF14584.6 CQR58284.1 - 0.38 10.7 6.7 0.1 12.6 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Sec34 PF04136.15 CQR58284.1 - 0.4 10.6 5.2 0.61 9.9 1.2 2.1 1 1 1 2 2 2 0 Sec34-like family Seryl_tRNA_N PF02403.22 CQR58284.1 - 0.4 10.9 6.2 1.1 9.5 3.2 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain SlyX PF04102.12 CQR58284.1 - 0.42 11.3 2.8 1.9 9.1 0.8 2.2 1 1 1 2 2 2 0 SlyX DUF16 PF01519.16 CQR58284.1 - 0.49 10.9 7.6 20 5.7 7.1 2.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 CENP-K PF11802.8 CQR58284.1 - 0.55 9.8 6.4 1 8.9 6.4 1.4 1 1 0 1 1 1 0 Centromere-associated protein K DUF4330 PF14221.6 CQR58284.1 - 0.73 10.0 11.6 0.71 10.1 8.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4330) DivIC PF04977.15 CQR58284.1 - 0.74 9.6 4.0 0.49 10.2 0.6 2.3 1 1 2 3 3 3 0 Septum formation initiator DUF148 PF02520.17 CQR58284.1 - 0.76 9.9 8.1 5.5 7.1 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF148 DUF2681 PF10883.8 CQR58284.1 - 0.87 10.0 5.8 0.18 12.2 0.9 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2681) NPV_P10 PF05531.12 CQR58284.1 - 2.1 8.9 9.5 1.4e+02 3.0 9.3 2.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 CQR58284.1 - 2.8 8.4 8.9 1.8e+02 2.6 8.9 2.8 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF1328 PF07043.13 CQR58285.1 - 3.1e-12 46.5 23.5 3.7e-12 46.3 23.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Phage_holin_3_6 PF07332.11 CQR58285.1 - 1.3 9.1 12.7 1.4 8.9 12.7 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2304 PF10066.9 CQR58285.1 - 4 7.7 12.8 4.4 7.6 12.8 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF2207 PF09972.9 CQR58285.1 - 9.8 4.8 11.8 10 4.7 11.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SH3_3 PF08239.11 CQR58287.1 - 6.6e-30 103.2 8.7 3.5e-15 56.0 1.5 2.4 2 0 0 2 2 2 2 Bacterial SH3 domain NLPC_P60 PF00877.19 CQR58287.1 - 2.9e-17 62.6 0.4 6.3e-16 58.3 0.1 3.0 2 2 0 2 2 2 1 NlpC/P60 family SH3_4 PF06347.13 CQR58287.1 - 2.5e-12 46.4 0.1 4.9e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_1 PF00018.28 CQR58287.1 - 3e-09 36.3 0.1 0.0022 17.6 0.0 2.5 2 0 0 2 2 2 2 SH3 domain Peptidase_C92 PF05708.12 CQR58287.1 - 1.4e-06 28.5 0.0 0.00021 21.4 0.0 2.4 2 0 0 2 2 2 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH3_9 PF14604.6 CQR58287.1 - 2.2e-06 27.4 1.2 0.029 14.2 0.1 2.4 2 0 0 2 2 2 2 Variant SH3 domain DEC-1_N PF04625.13 CQR58287.1 - 1.3e-05 24.4 6.7 1.3e-05 24.4 6.7 1.5 2 0 0 2 2 2 1 DEC-1 protein, N-terminal region SH3_5 PF08460.10 CQR58287.1 - 0.18 11.9 2.5 11 6.2 0.4 3.0 2 2 0 2 2 2 0 Bacterial SH3 domain DUF4453 PF14627.6 CQR58287.1 - 0.35 11.0 2.8 12 6.1 0.1 3.1 3 1 1 4 4 4 0 Domain of unknown function (DUF4453) DUF5525 PF17663.1 CQR58287.1 - 1.6 6.7 12.6 2.4 6.1 12.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5525) Cation_efflux PF01545.21 CQR58288.1 - 1e-51 175.5 11.0 1.5e-51 175.0 11.0 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 CQR58288.1 - 5e-18 65.0 2.6 8.1e-18 64.3 2.6 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter VMA21 PF09446.10 CQR58288.1 - 0.015 15.4 2.6 0.015 15.4 2.6 2.6 3 1 0 3 3 3 0 VMA21-like domain ABC_tran PF00005.27 CQR58290.1 - 2.8e-38 131.5 0.0 2.8e-20 73.2 0.0 3.0 3 0 0 3 3 3 2 ABC transporter ABC_tran_Xtn PF12848.7 CQR58290.1 - 1.8e-21 76.0 3.1 1.8e-21 76.0 3.1 2.0 3 0 0 3 3 3 1 ABC transporter AAA_21 PF13304.6 CQR58290.1 - 2.1e-10 40.9 6.9 0.00071 19.5 0.0 4.3 3 1 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58290.1 - 2.6e-06 27.0 1.6 0.05 13.0 0.1 3.2 3 0 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR58290.1 - 0.00011 22.8 4.7 0.0062 17.1 0.2 2.5 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 CQR58290.1 - 0.00068 19.3 0.1 0.016 15.0 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR58290.1 - 0.0017 18.2 0.1 0.0071 16.3 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 CQR58290.1 - 0.0069 16.5 0.0 0.21 11.7 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.22 CQR58290.1 - 0.056 13.8 0.6 6.7 7.1 0.0 3.1 3 0 0 3 3 3 0 RNA helicase AAA_18 PF13238.6 CQR58290.1 - 0.088 13.4 0.0 0.32 11.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 CQR58290.1 - 0.1 12.3 7.7 0.78 9.4 7.5 2.3 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 CQR58290.1 - 0.38 10.8 2.0 2.6 8.1 0.0 2.5 2 1 0 2 2 2 0 Dynamin family Lactamase_B_2 PF12706.7 CQR58291.1 - 6.9e-39 133.4 0.0 1.3e-38 132.6 0.0 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 CQR58291.1 - 2.2e-19 69.9 0.0 9.1e-19 67.9 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 CQR58291.1 - 0.0022 18.0 2.3 0.0047 16.9 2.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 CQR58291.1 - 0.025 14.0 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Virulence_fact PF13769.6 CQR58292.1 - 9.1e-29 99.5 1.5 7.6e-28 96.6 0.2 2.4 2 0 0 2 2 2 1 Virulence factor HEAT_2 PF13646.6 CQR58292.1 - 4.2e-21 75.1 11.1 5.2e-12 46.0 3.5 2.9 1 1 1 2 2 2 2 HEAT repeats Nfu_N PF08712.11 CQR58292.1 - 2.1e-14 53.3 0.0 4.1e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 Scaffold protein Nfu/NifU N terminal HEAT PF02985.22 CQR58292.1 - 3.2e-11 42.5 1.0 0.12 12.6 0.1 4.6 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.16 CQR58292.1 - 2e-07 31.0 5.5 0.15 12.8 0.4 5.0 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat Cnd1 PF12717.7 CQR58292.1 - 8.6e-05 22.6 0.5 0.018 15.1 0.1 3.7 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 CQR58292.1 - 0.00023 21.6 3.9 3.9 8.1 0.0 4.3 3 1 1 4 4 4 1 HEAT-like repeat Vac14_Fab1_bd PF12755.7 CQR58292.1 - 0.0041 17.7 0.0 2.9 8.5 0.0 3.0 2 1 1 3 3 3 1 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.20 CQR58292.1 - 0.21 10.1 0.0 1.2 7.6 0.0 1.9 1 1 0 1 1 1 0 Adaptin N terminal region AA_permease PF00324.21 CQR58293.1 - 3.9e-136 454.4 42.0 4.9e-136 454.1 42.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 CQR58293.1 - 5.6e-44 150.6 45.8 5.6e-44 150.6 45.1 1.3 1 1 0 1 1 1 1 Amino acid permease Transglut_core PF01841.19 CQR58294.1 - 6.2e-14 52.4 0.6 1e-12 48.5 0.0 2.6 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF553 PF04473.12 CQR58294.1 - 2.9e-06 26.9 1.1 6.9e-06 25.7 1.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core3 PF13471.6 CQR58294.1 - 0.023 14.6 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily Bact_lectin PF18483.1 CQR58294.1 - 0.023 14.7 0.0 0.26 11.3 0.0 2.1 1 1 0 1 1 1 0 Bacterial lectin Glyco_hyd_65N_2 PF14498.6 CQR58295.1 - 4.4e-68 229.7 0.0 6.1e-68 229.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain SBP_bac_1 PF01547.25 CQR58296.1 - 2.6e-10 40.8 13.9 2.6e-10 40.8 13.9 2.6 3 1 0 3 3 3 1 Bacterial extracellular solute-binding protein DUF3502 PF12010.8 CQR58296.1 - 0.37 11.4 7.0 0.8 10.4 0.6 3.9 4 1 0 4 4 4 0 Domain of unknown function (DUF3502) BPD_transp_1 PF00528.22 CQR58297.1 - 1.2e-10 41.4 22.8 3.7e-09 36.6 22.8 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NDUF_B5 PF09781.9 CQR58297.1 - 0.42 10.2 1.8 3.6 7.1 0.1 2.4 1 1 1 2 2 2 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit Stevor PF17410.2 CQR58297.1 - 1 8.9 5.9 3.4 7.1 0.0 2.8 3 0 0 3 3 3 0 Subtelomeric Variable Open Reading frame BPD_transp_1 PF00528.22 CQR58298.1 - 1.3e-14 54.3 11.3 1.3e-14 54.3 11.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bac_export_2 PF01312.19 CQR58298.1 - 3 7.0 5.2 2.2 7.4 2.1 2.0 2 1 0 2 2 2 0 FlhB HrpN YscU SpaS Family Response_reg PF00072.24 CQR58299.1 - 2.8e-29 101.6 0.0 4.7e-29 100.8 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR58299.1 - 8e-17 61.3 0.0 1.6e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58299.1 - 2.5e-11 43.4 0.3 1.4e-07 31.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR58299.1 - 3.9e-06 27.1 0.1 1.5e-05 25.2 0.1 2.0 1 0 0 1 1 1 1 GGDEF-like domain His_kinase PF06580.13 CQR58300.1 - 8.5e-24 83.7 1.6 8.5e-24 83.7 1.6 2.5 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR58300.1 - 1.9e-12 47.5 4.3 1.9e-12 47.5 4.3 1.9 2 0 0 2 2 2 1 Cache domain HAMP PF00672.25 CQR58300.1 - 3.8e-12 46.4 0.2 1.6e-11 44.4 0.0 2.1 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 CQR58300.1 - 4.6e-11 43.2 0.1 1.2e-10 41.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR58300.1 - 0.00061 19.6 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58300.1 - 0.012 15.5 0.0 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain FGGY_N PF00370.21 CQR58301.1 - 1.7e-67 227.5 0.0 2.4e-67 227.1 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 CQR58301.1 - 3.5e-37 128.1 0.0 7.8e-37 126.9 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 CQR58301.1 - 1.5e-06 27.9 0.1 0.051 13.1 0.2 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family AP_endonuc_2 PF01261.24 CQR58302.1 - 6.5e-07 29.0 0.1 3.2e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel ROK PF00480.20 CQR58303.1 - 9.1e-61 205.9 0.0 1.2e-60 205.5 0.0 1.1 1 0 0 1 1 1 1 ROK family HTH_27 PF13463.6 CQR58303.1 - 7.5e-05 23.2 0.0 0.00018 21.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 CQR58303.1 - 0.0014 18.4 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR58303.1 - 0.0076 15.8 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding SMC_ScpB PF04079.16 CQR58303.1 - 0.017 14.7 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB Fe_dep_repress PF01325.19 CQR58303.1 - 0.03 14.5 0.0 0.064 13.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 CQR58303.1 - 0.036 13.9 0.1 0.071 12.9 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR58303.1 - 0.08 12.9 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rio2_N PF09202.11 CQR58303.1 - 0.14 12.4 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal DUF4064 PF13273.6 CQR58304.1 - 0.0026 18.0 4.1 0.0026 18.0 4.1 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF4064) Acetyltransf_10 PF13673.7 CQR58305.1 - 5.4e-08 32.8 0.0 6.5e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR58305.1 - 6.1e-07 29.8 0.1 7.4e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR58305.1 - 8.3e-07 29.3 0.2 1e-06 28.9 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 CQR58305.1 - 0.0045 17.1 0.0 0.0076 16.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase baeRF_family2 PF18844.1 CQR58305.1 - 0.0091 16.1 0.2 0.012 15.7 0.2 1.1 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 2 PanZ PF12568.8 CQR58305.1 - 0.044 13.5 0.3 0.084 12.6 0.3 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Glutaredoxin PF00462.24 CQR58306.1 - 7.2e-15 55.0 0.1 8.3e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 CQR58306.1 - 2.1e-05 24.9 0.0 2.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 CQR58306.1 - 6.1e-05 23.0 0.0 8.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 CQR58306.1 - 0.00053 20.3 0.0 0.00055 20.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 CQR58306.1 - 0.0023 18.4 0.4 0.039 14.4 0.4 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 CQR58306.1 - 0.0039 17.4 0.8 0.018 15.2 0.3 1.9 1 1 1 2 2 2 1 Thioredoxin GST_N PF02798.20 CQR58306.1 - 0.0093 16.3 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DSBA PF01323.20 CQR58306.1 - 0.019 14.7 0.9 0.57 9.9 0.1 2.1 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin PF00085.20 CQR58306.1 - 0.064 13.2 0.1 0.09 12.8 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin Pyr_redox_2 PF07992.14 CQR58307.1 - 8.9e-52 176.1 0.3 1e-51 175.9 0.3 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR58307.1 - 5.5e-26 91.5 0.1 6.1e-19 68.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR58307.1 - 2.7e-20 72.7 1.1 1.4e-17 64.0 0.2 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 CQR58307.1 - 2.5e-07 30.8 0.0 4.5e-06 26.8 0.0 2.7 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR58307.1 - 1.3e-06 27.7 7.0 0.00022 20.4 0.0 3.6 2 1 2 4 4 4 2 FAD binding domain Thi4 PF01946.17 CQR58307.1 - 3e-05 23.4 0.1 0.0018 17.6 0.0 2.4 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 CQR58307.1 - 4.7e-05 23.1 5.8 0.17 11.4 0.2 3.6 2 2 0 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.22 CQR58307.1 - 4.8e-05 22.6 0.3 0.052 12.6 0.0 3.2 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 CQR58307.1 - 6.5e-05 21.8 0.0 0.0043 15.8 0.0 3.2 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_7 PF13241.6 CQR58307.1 - 0.00038 20.9 0.0 0.0028 18.1 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 CQR58307.1 - 0.00083 18.8 4.3 0.011 15.1 0.0 2.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR58307.1 - 0.0013 18.1 0.1 0.033 13.4 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.6 CQR58307.1 - 0.002 17.3 0.2 0.2 10.8 0.0 2.8 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 CQR58307.1 - 0.023 13.6 0.2 0.85 8.4 0.1 2.6 3 0 0 3 3 3 0 Tryptophan halogenase Lycopene_cycl PF05834.12 CQR58307.1 - 0.11 11.5 0.1 0.41 9.6 0.1 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein E1-E2_ATPase PF00122.20 CQR58308.1 - 3.8e-47 160.1 0.6 3.8e-47 160.1 0.6 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 CQR58308.1 - 1.4e-39 136.6 2.1 1.4e-39 136.6 2.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 CQR58308.1 - 0.0016 18.2 2.0 0.14 11.9 1.2 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR58308.1 - 0.0043 17.5 0.1 0.014 15.8 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_hydro_36 PF17167.4 CQR58309.1 - 1.8e-120 402.5 0.4 3.3e-120 401.6 0.4 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 CQR58309.1 - 4.8e-70 235.8 0.0 6.6e-70 235.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 36 Glyco_hydro_65C PF03633.15 CQR58309.1 - 0.0009 19.1 0.0 0.0025 17.7 0.0 1.9 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain Glyco_hydro_2_C PF02836.17 CQR58310.1 - 6e-23 81.4 0.0 9.6e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 CQR58310.1 - 2.8e-13 50.1 0.0 5.3e-11 42.7 0.0 2.6 2 0 0 2 2 2 2 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 CQR58310.1 - 2.9e-10 40.8 0.0 8.6e-10 39.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_42 PF02449.15 CQR58310.1 - 0.0013 18.1 0.0 0.0021 17.5 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase DUF4350 PF14258.6 CQR58310.1 - 0.0048 17.3 0.0 0.86 10.1 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4350) rhaM PF05336.13 CQR58311.1 - 1.6e-06 28.1 0.8 0.031 14.3 0.0 3.2 2 2 0 2 2 2 2 L-rhamnose mutarotase HTH_18 PF12833.7 CQR58312.1 - 1.8e-21 76.2 1.1 2.3e-21 75.8 0.3 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58312.1 - 5.1e-15 55.1 0.3 1.9e-07 31.0 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR58312.1 - 6e-14 52.1 0.5 9.9e-14 51.4 0.5 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR58312.1 - 9.1e-08 31.7 0.3 1.5e-07 31.0 0.3 1.4 1 0 0 1 1 1 1 Cupin domain EutQ PF06249.12 CQR58312.1 - 0.075 12.8 0.0 0.18 11.6 0.0 1.5 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutQ gpD PF02925.16 CQR58312.1 - 0.13 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage scaffolding protein D POLO_box PF00659.18 CQR58313.1 - 0.075 13.2 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 POLO box duplicated region Polysacc_deac_1 PF01522.21 CQR58314.1 - 3e-16 59.4 0.0 5.3e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 CQR58314.1 - 0.00017 20.9 0.0 0.00027 20.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 OrfB_IS605 PF01385.19 CQR58315.1 - 3.3e-29 101.5 2.3 8.8e-29 100.2 2.3 1.7 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 CQR58315.1 - 1.2e-22 79.1 1.1 3.1e-22 77.8 1.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 CQR58315.1 - 1.8e-22 79.1 0.7 3.8e-22 78.0 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L32e PF01655.18 CQR58315.1 - 0.016 15.6 4.3 0.041 14.3 4.3 1.7 1 0 0 1 1 1 0 Ribosomal protein L32 zf-RanBP PF00641.18 CQR58315.1 - 2.3 7.6 7.4 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others AbfB PF05270.13 CQR58317.1 - 5.6e-35 120.4 0.3 1e-34 119.5 0.3 1.5 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase B (ABFB) domain RicinB_lectin_2 PF14200.6 CQR58317.1 - 2.4e-21 76.2 16.7 8.8e-11 42.4 0.7 4.3 3 2 1 5 5 5 2 Ricin-type beta-trefoil lectin domain-like BNR_2 PF13088.6 CQR58317.1 - 2.7e-12 46.6 1.0 2.2e-10 40.3 0.3 2.4 1 1 1 2 2 2 2 BNR repeat-like domain Ricin_B_lectin PF00652.22 CQR58317.1 - 4.2e-10 39.9 0.0 7.9e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin domain BNR PF02012.20 CQR58317.1 - 1.4e-05 24.4 18.9 0.075 13.1 0.3 5.8 4 0 0 4 4 4 3 BNR/Asp-box repeat BNR_6 PF15899.5 CQR58317.1 - 0.0025 17.7 3.5 0.59 10.4 0.0 3.9 4 0 0 4 4 4 1 BNR-Asp box repeat Sortilin-Vps10 PF15902.5 CQR58317.1 - 0.004 16.0 3.4 2 7.1 1.9 3.1 2 1 0 2 2 2 2 Sortilin, neurotensin receptor 3, DUF1521 PF07481.11 CQR58317.1 - 0.018 15.0 1.1 0.18 11.8 0.2 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1521) Glyco_hydro_43 PF04616.14 CQR58318.1 - 9.6e-58 195.8 2.5 1.1e-57 195.6 2.5 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 BPD_transp_1 PF00528.22 CQR58319.1 - 3.2e-20 72.6 17.3 3.2e-20 72.6 17.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58320.1 - 1.4e-19 70.5 14.1 1.4e-19 70.5 14.1 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 CQR58321.1 - 1.3e-42 146.5 0.5 2.2e-42 145.8 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR58321.1 - 2.8e-41 142.5 3.8 2.8e-41 142.5 3.8 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR58321.1 - 3.3e-06 27.0 0.0 0.00029 20.7 0.0 2.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58321.1 - 4.6e-05 22.9 0.0 0.29 10.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein HTH_18 PF12833.7 CQR58322.1 - 4.6e-20 71.7 0.2 9.1e-20 70.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58322.1 - 1.9e-13 50.1 0.4 4.3e-06 26.7 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Cupin_2 PF07883.11 CQR58322.1 - 1.3e-09 37.7 0.1 2.6e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 Cupin domain ARD PF03079.14 CQR58322.1 - 1.6e-08 34.9 0.1 3.6e-08 33.7 0.1 1.7 1 0 0 1 1 1 1 ARD/ARD' family AraC_binding PF02311.19 CQR58322.1 - 1.1e-07 31.8 1.4 2.8e-07 30.5 0.7 2.0 2 1 0 2 2 2 1 AraC-like ligand binding domain EutQ PF06249.12 CQR58322.1 - 0.022 14.6 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_1 PF00190.22 CQR58322.1 - 0.06 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Cupin Put_DNA-bind_N PF06971.13 CQR58322.1 - 0.12 12.4 0.1 3 7.9 0.0 2.5 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus CTP-dep_RFKase PF01982.16 CQR58322.1 - 0.14 12.2 0.0 0.41 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF120 OrfB_IS605 PF01385.19 CQR58325.1 - 1.1e-17 64.4 0.6 2.3e-17 63.3 0.6 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR58325.1 - 1.5e-08 34.4 0.2 1.9e-07 30.9 0.2 2.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Fer4_NifH PF00142.18 CQR58325.1 - 0.031 13.7 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Beta-lactamase PF00144.24 CQR58326.1 - 8.6e-24 84.4 0.1 1.5e-23 83.6 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase SLH PF00395.20 CQR58326.1 - 2.4e-15 56.2 0.1 6.6e-08 32.4 0.0 3.6 3 0 0 3 3 3 3 S-layer homology domain Beta-lactamase PF00144.24 CQR58327.1 - 1.8e-23 83.3 0.8 2e-23 83.2 0.8 1.0 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 CQR58327.1 - 0.00077 19.1 0.1 0.001 18.7 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Toprim_Crpt PF13342.6 CQR58327.1 - 0.091 12.8 0.0 0.24 11.4 0.0 1.6 2 0 0 2 2 2 0 C-terminal repeat of topoisomerase OrfB_IS605 PF01385.19 CQR58328.1 - 3.6e-27 95.0 6.0 3.6e-27 95.0 6.0 2.4 2 1 1 3 3 3 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR58328.1 - 5.7e-17 61.4 0.1 1.3e-16 60.2 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR58328.1 - 1.1e-11 44.0 3.2 2.5e-11 42.9 3.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Occludin_ELL PF07303.13 CQR58328.1 - 2.1 9.1 10.9 5.2 7.8 0.2 2.6 2 1 0 2 2 2 0 Occludin homology domain Cys_Met_Meta_PP PF01053.20 CQR58330.1 - 8.6e-151 501.8 0.0 9.7e-151 501.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 CQR58330.1 - 2e-14 53.7 0.1 3.5e-14 52.9 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 CQR58330.1 - 1.4e-09 37.4 0.0 2.6e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 CQR58330.1 - 4.4e-09 36.0 0.0 7.2e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.16 CQR58330.1 - 1.1e-05 24.5 0.0 1.5e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 CQR58330.1 - 0.00084 18.7 0.0 0.0029 16.9 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 CQR58330.1 - 0.084 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS GntR PF00392.21 CQR58331.1 - 1.1e-16 60.2 0.1 2.1e-16 59.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family UTRA PF07702.13 CQR58331.1 - 3.1e-16 59.5 0.0 4.3e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 UTRA domain PaaX PF07848.12 CQR58331.1 - 0.025 14.8 0.0 0.047 13.9 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_DeoR PF08220.12 CQR58331.1 - 0.038 13.7 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Mnd1 PF03962.15 CQR58331.1 - 0.053 13.8 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Mnd1 HTH domain MarR PF01047.22 CQR58331.1 - 0.053 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 MarR family SFTA2 PF15210.6 CQR58331.1 - 0.065 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Surfactant-associated protein 2 HTH_11 PF08279.12 CQR58331.1 - 0.074 13.0 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.7 CQR58331.1 - 0.1 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 CQR58331.1 - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 CQR58331.1 - 0.16 12.0 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PfkB PF00294.24 CQR58332.1 - 5.7e-32 111.2 0.0 6.6e-24 84.7 0.0 2.0 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 CQR58332.1 - 0.02 14.3 0.0 0.04 13.3 0.0 1.6 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase ADP_PFK_GK PF04587.15 CQR58332.1 - 0.14 10.7 0.0 0.24 9.9 0.0 1.3 1 0 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region KDGP_aldolase PF07071.11 CQR58333.1 - 2.4e-96 321.7 0.6 2.9e-96 321.5 0.6 1.0 1 0 0 1 1 1 1 KDGP aldolase Arabinose_bd PF12625.7 CQR58333.1 - 0.035 14.2 0.1 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Arabinose-binding domain of AraC transcription regulator, N-term SelA PF03841.13 CQR58334.1 - 7.8e-11 41.6 2.0 6.3e-09 35.3 1.9 2.9 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase DegT_DnrJ_EryC1 PF01041.17 CQR58334.1 - 2.2e-05 24.0 1.1 0.0035 16.7 0.4 2.3 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 CQR58334.1 - 6.8e-05 21.6 0.1 0.00012 20.8 0.1 1.3 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 CQR58334.1 - 0.0001 21.7 0.2 0.00022 20.6 0.2 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase UPF0051 PF01458.17 CQR58334.1 - 0.054 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein family (UPF0051) Amidohydro_1 PF01979.20 CQR58335.1 - 1.1e-05 25.0 0.0 0.0033 16.8 0.0 2.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR58335.1 - 0.0049 16.4 0.4 0.06 12.8 0.0 2.3 3 0 0 3 3 3 1 Amidohydrolase family TatD_DNase PF01026.21 CQR58335.1 - 0.12 11.7 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 TatD related DNase DUF3667 PF12412.8 CQR58335.1 - 0.19 11.2 0.0 0.36 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) HTH_18 PF12833.7 CQR58336.1 - 1.2e-21 76.8 0.0 4.6e-21 74.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58336.1 - 2.3e-16 59.4 0.2 2.1e-08 34.1 0.0 2.9 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family dCache_1 PF02743.18 CQR58336.1 - 2.2e-14 53.9 0.2 4.3e-14 52.9 0.2 1.5 1 0 0 1 1 1 1 Cache domain GGDEF_2 PF17853.1 CQR58336.1 - 5.1e-06 26.7 0.0 3.3e-05 24.1 0.0 2.4 2 0 0 2 2 2 1 GGDEF-like domain DUF3671 PF12420.8 CQR58336.1 - 0.0038 17.3 0.2 0.079 13.1 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function Glyco_hydro_130 PF04041.13 CQR58337.1 - 7.3e-56 189.4 0.2 1.5e-42 145.7 0.1 2.0 2 0 0 2 2 2 2 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_43 PF04616.14 CQR58337.1 - 0.009 15.4 0.1 0.45 9.8 0.0 2.6 3 0 0 3 3 3 2 Glycosyl hydrolases family 43 Glyco_hydro_38N PF01074.22 CQR58338.1 - 4.3e-79 265.9 0.1 6.3e-79 265.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 CQR58338.1 - 2.2e-60 204.4 0.0 3.4e-60 203.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 CQR58338.1 - 1.8e-26 92.1 0.1 3.6e-26 91.1 0.1 1.6 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 CQR58338.1 - 2.5e-09 37.1 0.0 6.4e-09 35.8 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_3 PF00933.21 CQR58339.1 - 6.3e-79 265.6 0.0 8.5e-79 265.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 CQR58339.1 - 1.6e-57 194.8 0.0 2.4e-57 194.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 CQR58339.1 - 6.8e-22 77.4 0.0 1.2e-21 76.5 0.0 1.4 1 0 0 1 1 1 1 Fibronectin type III-like domain TetR_C_7 PF14246.6 CQR58339.1 - 0.15 12.1 1.3 0.33 11.0 0.2 2.1 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain SBP_bac_1 PF01547.25 CQR58340.1 - 1.5e-19 71.1 5.1 2.7e-19 70.3 5.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58340.1 - 2.4e-11 44.0 2.5 2.4e-11 44.0 2.5 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 CQR58341.1 - 1e-14 54.7 17.1 9.8e-13 48.2 15.6 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Anophelin PF10731.9 CQR58341.1 - 1.2 9.1 2.6 1 9.2 0.8 1.9 2 0 0 2 2 2 0 Thrombin inhibitor from mosquito BPD_transp_1 PF00528.22 CQR58342.1 - 8e-16 58.3 10.8 8e-16 58.3 10.8 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MNHE PF01899.16 CQR58342.1 - 0.0027 17.5 1.5 0.007 16.1 1.5 1.7 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Glyco_hydro_38 PF18438.1 CQR58343.1 - 1.7e-37 127.8 0.0 3.5e-37 126.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain 1 Glyco_hydro_38N PF01074.22 CQR58343.1 - 1.7e-31 109.6 0.0 2.8e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 CQR58343.1 - 2.4e-19 70.3 0.0 3.9e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 CQR58343.1 - 4.7e-14 52.3 0.1 1e-13 51.2 0.1 1.6 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 CQR58343.1 - 4.6e-10 39.5 0.0 1.7e-09 37.6 0.0 2.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain KAsynt_C_assoc PF16197.5 CQR58343.1 - 0.13 12.7 0.0 2 8.9 0.0 2.4 2 0 0 2 2 2 0 Ketoacyl-synthetase C-terminal extension Glyco_hydro_125 PF06824.11 CQR58344.1 - 1.6e-153 511.5 0.1 1.8e-153 511.3 0.1 1.0 1 0 0 1 1 1 1 Metal-independent alpha-mannosidase (GH125) Gemini_V2 PF01524.17 CQR58344.1 - 0.092 12.9 0.0 0.36 11.1 0.1 2.0 2 0 0 2 2 2 0 Geminivirus V2 protein DeoC PF01791.9 CQR58345.1 - 6.2e-21 75.1 4.8 7.8e-21 74.8 4.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 CQR58345.1 - 0.0015 17.8 2.5 0.0024 17.2 2.5 1.4 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 CQR58345.1 - 0.62 9.0 6.6 0.94 8.4 6.6 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Band_7 PF01145.25 CQR58346.1 - 3.9e-28 98.6 4.2 6.2e-28 98.0 4.2 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Jnk-SapK_ap_N PF09744.9 CQR58346.1 - 0.05 13.8 6.4 0.1 12.8 6.4 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 CQR58346.1 - 1 9.7 8.4 0.12 12.7 2.5 2.3 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.21 CQR58347.1 - 1.4e-35 122.7 17.4 1.4e-35 122.7 17.4 3.3 4 0 0 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR58347.1 - 4.9e-08 33.2 0.3 4.9e-08 33.2 0.3 3.2 3 1 0 3 3 2 1 HAMP domain DUF948 PF06103.11 CQR58347.1 - 0.00055 20.1 12.4 0.18 12.1 0.8 5.1 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Cache_3-Cache_2 PF17201.4 CQR58347.1 - 0.0013 18.1 1.1 0.0043 16.4 0.0 2.5 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain sCache_3_3 PF17202.4 CQR58347.1 - 0.0081 16.6 0.0 0.029 14.8 0.0 2.0 1 0 0 1 1 1 1 Single cache domain 3 LXG PF04740.12 CQR58347.1 - 0.013 15.3 9.4 0.28 10.9 1.7 3.0 2 1 1 3 3 3 0 LXG domain of WXG superfamily Laminin_II PF06009.12 CQR58347.1 - 0.031 14.3 11.5 0.034 14.1 1.9 3.0 2 2 0 2 2 2 0 Laminin Domain II dCache_1 PF02743.18 CQR58347.1 - 0.056 13.2 0.1 0.056 13.2 0.1 3.0 4 0 0 4 4 4 0 Cache domain PAS_6 PF08348.11 CQR58347.1 - 0.095 12.6 0.0 3.9 7.4 0.0 2.7 2 0 0 2 2 2 0 YheO-like PAS domain Sec34 PF04136.15 CQR58347.1 - 0.2 11.5 6.8 13 5.6 0.3 3.9 3 1 0 3 3 3 0 Sec34-like family DUF1664 PF07889.12 CQR58347.1 - 0.6 10.2 9.0 1.8 8.6 0.5 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) CheZ PF04344.13 CQR58347.1 - 4.7 7.1 10.8 0.34 10.8 1.6 2.5 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ BLOC1_2 PF10046.9 CQR58347.1 - 6 7.2 8.4 9.3 6.6 0.2 3.6 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.8 CQR58347.1 - 7.2 5.8 12.8 2.1 7.6 4.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Sulfate_transp PF00916.20 CQR58348.1 - 4.1e-12 45.6 11.8 4.2e-07 29.0 1.5 2.0 1 1 1 2 2 2 2 Sulfate permease family Wzy_C PF04932.15 CQR58348.1 - 0.37 10.4 4.9 0.42 10.2 4.9 1.2 1 0 0 1 1 1 0 O-Antigen ligase Tlr3_TMD PF17968.1 CQR58348.1 - 0.57 10.4 0.1 0.57 10.4 0.1 2.8 3 0 0 3 3 3 0 Toll-like receptor 3 trans-membrane domain DAHP_synth_1 PF00793.20 CQR58349.1 - 4.7e-79 265.1 0.0 6.4e-79 264.7 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family CM_2 PF01817.21 CQR58349.1 - 5e-22 78.0 0.0 9.8e-22 77.1 0.0 1.5 1 0 0 1 1 1 1 Chorismate mutase type II NeuB PF03102.14 CQR58349.1 - 1.7e-08 34.2 0.0 2.5e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 NeuB family IGPS PF00218.21 CQR58349.1 - 0.074 12.2 0.1 0.36 10.0 0.1 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase HATPase_c PF02518.26 CQR58350.1 - 1.1e-28 99.9 0.1 2.8e-28 98.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 CQR58350.1 - 1.6e-28 99.0 0.0 7.1e-09 35.9 0.0 3.6 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 CQR58350.1 - 1.8e-27 95.7 0.2 8.9e-27 93.5 0.3 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 CQR58350.1 - 3.4e-27 94.7 0.0 5.3e-10 39.3 0.0 3.7 4 0 0 4 4 4 3 PAS fold HisKA PF00512.25 CQR58350.1 - 3.1e-20 72.0 0.0 8.7e-20 70.5 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 CQR58350.1 - 6.2e-19 68.3 0.3 7.8e-08 32.5 0.0 4.2 3 2 0 3 3 3 2 PAS fold PAS_3 PF08447.12 CQR58350.1 - 1e-15 57.8 0.0 2.3e-09 37.4 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 CQR58350.1 - 5.4e-11 42.2 0.0 0.00038 20.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_2 PF08446.11 CQR58350.1 - 0.0049 17.5 0.0 7.1 7.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.6 CQR58350.1 - 0.0061 16.7 0.0 3.4 7.8 0.0 3.0 3 0 0 3 3 3 1 PAS domain HEPN_LA2681 PF18733.1 CQR58350.1 - 0.15 11.3 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 LA2681-like HEPN PAS_12 PF18095.1 CQR58350.1 - 0.17 11.6 0.0 25 4.5 0.0 2.8 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain Response_reg PF00072.24 CQR58351.1 - 1.2e-22 80.1 0.0 1.4e-22 80.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF2294 PF10057.9 CQR58352.1 - 3.5e-26 91.5 0.0 1.8e-18 66.7 0.0 2.3 2 1 0 2 2 2 2 Uncharacterized conserved protein (DUF2294) GSHPx PF00255.19 CQR58353.1 - 2.5e-43 146.0 0.7 3.6e-43 145.5 0.7 1.2 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 CQR58353.1 - 6.1e-06 26.2 0.1 7e-05 22.7 0.0 2.2 2 1 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 CQR58353.1 - 0.0032 17.2 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 Redoxin DUF823 PF05689.11 CQR58353.1 - 0.13 12.0 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF823) CitMHS PF03600.16 CQR58354.1 - 3.8e-58 197.1 36.3 3.8e-58 197.1 36.3 1.9 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 CQR58354.1 - 9.2e-23 81.2 26.0 1.2e-22 80.9 26.0 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein DcuA_DcuB PF03605.14 CQR58354.1 - 0.00018 20.6 11.3 0.00018 20.6 11.3 2.3 3 0 0 3 3 3 1 Anaerobic c4-dicarboxylate membrane transporter Frag1 PF10277.9 CQR58354.1 - 4.9 6.6 17.6 0.094 12.2 3.2 3.3 3 1 0 3 3 3 0 Frag1/DRAM/Sfk1 family ToxN_toxin PF13958.6 CQR58355.1 - 1.6e-42 145.4 0.0 1.9e-42 145.2 0.0 1.0 1 0 0 1 1 1 1 Toxin ToxN, type III toxin-antitoxin system PQQ_2 PF13360.6 CQR58356.1 - 2.3e-21 76.5 2.1 2.8e-17 63.1 3.3 3.5 1 1 1 3 3 3 2 PQQ-like domain PQQ PF01011.21 CQR58356.1 - 4.1e-15 54.9 5.3 0.0021 17.9 0.1 7.0 7 0 0 7 7 7 3 PQQ enzyme repeat PQQ_3 PF13570.6 CQR58356.1 - 2.6e-07 30.9 9.5 0.0026 18.2 0.4 6.8 7 1 1 8 8 8 1 PQQ-like domain DUF3048_C PF17479.2 CQR58356.1 - 0.016 15.6 0.5 0.047 14.1 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3048) C-terminal domain YchF-GTPase_C PF06071.13 CQR58356.1 - 0.073 13.3 0.1 2.5 8.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF933) Bac_luciferase PF00296.20 CQR58357.1 - 6.7e-52 176.8 0.0 8.8e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Flavin_Reduct PF01613.18 CQR58358.1 - 5.7e-10 39.4 0.0 8e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Putative_PNPOx PF01243.20 CQR58358.1 - 0.00083 19.5 0.0 0.0015 18.6 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 CQR58358.1 - 0.038 13.8 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF447) HTH_20 PF12840.7 CQR58359.1 - 2.6e-12 46.6 0.2 1e-11 44.7 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 CQR58359.1 - 0.018 15.2 0.1 0.81 9.9 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 CQR58359.1 - 0.02 14.8 0.0 0.05 13.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR58359.1 - 0.021 14.7 0.4 0.071 13.0 0.0 2.1 3 0 0 3 3 3 0 MarR family HTH_24 PF13412.6 CQR58359.1 - 0.03 13.9 0.0 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding SAM_adeno_trans PF01887.16 CQR58359.1 - 0.12 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase TIR-like PF10137.9 CQR58361.1 - 1.3e-20 73.5 0.0 4.9e-20 71.6 0.0 1.9 1 1 0 1 1 1 1 Predicted nucleotide-binding protein containing TIR-like domain TIR_2 PF13676.6 CQR58361.1 - 3.8e-05 24.3 0.0 9e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 TIR domain Amidase_3 PF01520.18 CQR58362.1 - 1.1e-45 155.8 0.0 1.7e-45 155.3 0.0 1.3 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase SH3_3 PF08239.11 CQR58362.1 - 4.3e-28 97.4 8.0 9.9e-14 51.4 1.3 2.7 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_4 PF06347.13 CQR58362.1 - 1.7e-17 63.0 1.1 2.5e-09 36.8 0.1 2.5 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_1 PF00018.28 CQR58362.1 - 6.4e-05 22.5 0.7 0.026 14.1 0.1 2.4 2 0 0 2 2 2 2 SH3 domain SH3_16 PF18348.1 CQR58362.1 - 0.001 18.8 2.2 1.1 9.2 0.4 2.5 2 0 0 2 2 2 2 Bacterial dipeptidyl-peptidase Sh3 domain SH3_9 PF14604.6 CQR58362.1 - 0.0014 18.5 0.8 0.21 11.5 0.1 2.6 2 0 0 2 2 2 2 Variant SH3 domain SH3_2 PF07653.17 CQR58362.1 - 0.0078 15.9 2.1 0.17 11.6 0.2 2.4 2 0 0 2 2 2 1 Variant SH3 domain GW PF13457.6 CQR58362.1 - 0.044 14.4 3.2 0.64 10.7 0.5 3.5 3 1 0 3 3 3 0 GW (Gly-Tryp) dipeptide domain HD PF01966.22 CQR58363.1 - 2.9e-18 66.2 0.1 5.1e-18 65.5 0.1 1.4 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 CQR58363.1 - 3.5e-13 49.6 0.2 8.1e-13 48.4 0.2 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 CQR58363.1 - 0.1 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 HDOD domain Response_reg PF00072.24 CQR58364.1 - 8e-26 90.4 0.0 1.6e-25 89.5 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR58364.1 - 4.3e-20 71.8 0.8 1.3e-19 70.2 0.1 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58364.1 - 5.6e-18 64.6 2.4 1.5e-10 40.9 0.1 3.4 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR58364.1 - 4.8e-05 23.6 0.9 0.0002 21.6 0.1 2.5 3 0 0 3 3 3 1 GGDEF-like domain UPF0122 PF04297.14 CQR58364.1 - 0.00032 20.9 0.2 0.00087 19.5 0.2 1.7 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 CQR58364.1 - 0.00054 19.4 0.2 0.0015 18.0 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1843 PF08898.10 CQR58364.1 - 0.00084 19.8 0.1 0.0029 18.1 0.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1843) HTH_Crp_2 PF13545.6 CQR58364.1 - 0.0088 16.0 0.2 0.065 13.2 0.1 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Neugrin PF06413.11 CQR58364.1 - 0.09 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Neugrin HTH_Tnp_4 PF13613.6 CQR58364.1 - 0.11 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease His_kinase PF06580.13 CQR58365.1 - 1.5e-24 86.1 1.3 3.5e-24 84.9 1.3 1.7 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR58365.1 - 2.1e-10 40.8 0.1 3.8e-10 40.0 0.1 1.4 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR58365.1 - 2.4e-07 31.3 0.0 5e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR58365.1 - 7.1e-05 23.1 0.0 0.00017 21.9 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR58365.1 - 0.13 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BPD_transp_1 PF00528.22 CQR58366.1 - 1.2e-18 67.5 20.7 1.2e-18 67.5 20.7 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 CQR58366.1 - 6.8 7.1 6.9 27 5.1 0.0 2.9 3 0 0 3 3 3 0 Sigma factor regulator N-terminal BPD_transp_1 PF00528.22 CQR58367.1 - 1.8e-17 63.7 14.9 1.8e-17 63.7 14.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component YfhO PF09586.10 CQR58367.1 - 0.13 10.5 11.7 0.24 9.6 11.7 1.4 1 0 0 1 1 1 0 Bacterial membrane protein YfhO SBP_bac_8 PF13416.6 CQR58368.1 - 1.7e-46 159.3 10.4 2.2e-46 158.9 10.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR58368.1 - 2.1e-39 136.3 10.6 3.5e-39 135.6 10.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58368.1 - 3.9e-06 26.4 1.4 0.00011 21.7 1.4 2.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR58368.1 - 4.7e-06 26.5 0.1 8.7e-05 22.4 0.1 2.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Nramp PF01566.18 CQR58369.1 - 1.6e-118 395.8 27.9 2.1e-118 395.4 27.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein tRNA-synt_1c PF00749.21 CQR58370.1 - 9.3e-99 330.3 0.0 1.2e-98 329.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 CQR58370.1 - 2.4e-51 174.1 0.0 3.3e-51 173.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain TPR_2 PF07719.17 CQR58371.1 - 6.9e-07 28.9 4.6 6.6e-05 22.7 0.1 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat Methyltransf_28 PF02636.17 CQR58371.1 - 1.3e-06 28.3 0.1 0.014 15.0 0.0 2.2 2 0 0 2 2 2 2 Putative S-adenosyl-L-methionine-dependent methyltransferase TPR_1 PF00515.28 CQR58371.1 - 8.6e-06 25.4 0.0 0.0004 20.1 0.0 3.2 2 0 0 2 2 2 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 CQR58371.1 - 5.1e-05 23.3 1.9 0.00026 21.0 0.9 2.3 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_14 PF13428.6 CQR58371.1 - 0.001 19.7 4.2 0.021 15.6 1.7 3.2 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 CQR58371.1 - 0.0012 19.4 0.5 0.011 16.4 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 CQR58371.1 - 0.01 16.1 1.4 0.037 14.3 0.6 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.6 CQR58371.1 - 0.11 13.1 2.3 0.66 10.5 0.9 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 CQR58371.1 - 0.18 12.5 1.4 83 4.2 0.0 4.0 3 0 0 3 3 3 0 Tetratricopeptide repeat Methyltransf_12 PF08242.12 CQR58371.1 - 0.19 12.5 0.0 0.97 10.2 0.0 2.2 2 1 1 3 3 3 0 Methyltransferase domain TPR_7 PF13176.6 CQR58371.1 - 0.2 11.8 3.2 10 6.4 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 CQR58371.1 - 0.35 10.8 3.9 3.4 7.7 0.1 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_9 PF13371.6 CQR58371.1 - 0.52 10.5 4.6 16 5.8 0.0 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat Cu_amine_oxidN1 PF07833.11 CQR58372.1 - 3.3e-11 43.5 0.0 6.1e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain Cupin_1 PF00190.22 CQR58373.1 - 5.2e-47 159.2 0.0 2e-24 85.9 0.0 2.1 2 0 0 2 2 2 2 Cupin Cupin_2 PF07883.11 CQR58373.1 - 2.4e-24 84.8 0.2 1.4e-11 43.9 0.1 2.2 2 0 0 2 2 2 2 Cupin domain Cupin_3 PF05899.12 CQR58373.1 - 2.7e-08 33.4 0.0 0.0061 16.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF861) AraC_binding PF02311.19 CQR58373.1 - 1.4e-05 25.0 0.9 0.00035 20.5 0.1 2.5 3 0 0 3 3 3 1 AraC-like ligand binding domain 3-HAO PF06052.12 CQR58373.1 - 0.019 14.6 0.0 0.27 10.9 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyanthranilic acid dioxygenase Cupin_4 PF08007.12 CQR58373.1 - 0.033 13.6 0.0 0.08 12.4 0.0 1.6 2 0 0 2 2 2 0 Cupin superfamily protein ARD PF03079.14 CQR58373.1 - 0.066 13.4 0.2 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 ARD/ARD' family MannoseP_isomer PF01050.18 CQR58373.1 - 0.21 11.5 0.0 0.9 9.4 0.0 1.9 2 0 0 2 2 2 0 Mannose-6-phosphate isomerase Bac_luciferase PF00296.20 CQR58374.1 - 6.4e-51 173.6 1.6 7.6e-51 173.4 1.6 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase LMWPc PF01451.21 CQR58375.1 - 7.9e-24 84.6 0.0 9.2e-24 84.4 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase ArsB PF02040.15 CQR58376.1 - 5.9e-222 737.4 35.9 6.8e-222 737.2 35.9 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.16 CQR58376.1 - 1.4e-23 83.6 38.3 1.4e-23 83.6 38.3 1.9 1 1 1 2 2 2 1 Citrate transporter Lig_chan PF00060.26 CQR58376.1 - 3.2 7.6 4.3 0.7 9.7 0.4 1.9 2 0 0 2 2 2 0 Ligand-gated ion channel HTH_5 PF01022.20 CQR58377.1 - 1.8e-16 59.7 0.6 3.3e-16 58.9 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 CQR58377.1 - 7.4e-09 35.5 0.0 1.3e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 CQR58377.1 - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 CQR58377.1 - 0.0015 18.4 0.1 0.0041 17.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 CQR58377.1 - 0.0023 17.4 0.2 0.0057 16.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding BLACT_WH PF17778.1 CQR58377.1 - 0.0036 17.3 0.5 0.0068 16.4 0.2 1.6 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain HxlR PF01638.17 CQR58377.1 - 0.0069 16.2 0.1 0.009 15.8 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_23 PF13384.6 CQR58377.1 - 0.0075 16.0 0.2 0.028 14.2 0.0 2.0 2 1 1 3 3 3 1 Homeodomain-like domain S10_plectin PF03501.15 CQR58377.1 - 0.021 14.9 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Plectin/S10 domain Fe_dep_repress PF01325.19 CQR58377.1 - 0.024 14.8 0.0 0.068 13.4 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 CQR58377.1 - 0.025 14.9 0.0 0.048 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Cdc6_C PF09079.11 CQR58377.1 - 0.041 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_10 PF04967.12 CQR58377.1 - 0.046 13.5 0.0 0.088 12.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.12 CQR58377.1 - 0.053 13.5 0.2 0.16 11.9 0.0 2.0 3 0 0 3 3 3 0 HTH domain HTH_34 PF13601.6 CQR58377.1 - 0.08 13.1 0.0 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 CQR58377.1 - 0.09 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Penicillinase_R PF03965.16 CQR58377.1 - 0.12 12.7 0.0 0.21 11.9 0.0 1.6 1 1 0 1 1 1 0 Penicillinase repressor ABC_tran PF00005.27 CQR58379.1 - 9.3e-34 116.9 0.1 2.5e-33 115.5 0.1 1.8 1 0 0 1 1 1 1 ABC transporter FtsX PF02687.21 CQR58379.1 - 3.8e-13 49.7 0.4 3.8e-13 49.7 0.4 3.1 3 0 0 3 3 3 1 FtsX-like permease family SMC_N PF02463.19 CQR58379.1 - 1.1e-06 28.3 0.8 7.7e-06 25.5 0.6 2.3 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR58379.1 - 1.3e-06 28.5 2.5 0.028 14.2 0.2 2.9 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR58379.1 - 0.001 19.0 0.2 0.0035 17.3 0.1 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 CQR58379.1 - 0.0013 19.3 0.4 0.0028 18.2 0.4 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR58379.1 - 0.0017 18.0 0.4 0.0087 15.8 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 CQR58379.1 - 0.0035 17.3 0.1 1 9.2 0.1 2.4 2 0 0 2 2 2 1 NTPase AAA_15 PF13175.6 CQR58379.1 - 0.0051 16.6 0.3 3.6 7.2 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 CQR58379.1 - 0.0072 16.6 0.6 0.53 10.5 0.5 3.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 CQR58379.1 - 0.023 15.1 0.0 0.28 11.5 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 CQR58379.1 - 0.071 13.4 0.1 1.5 9.1 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 CQR58379.1 - 0.078 12.9 0.3 0.33 10.8 0.3 1.9 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 CQR58379.1 - 0.089 11.4 0.2 3.9 6.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain ILEI PF15711.5 CQR58379.1 - 0.12 12.9 0.0 8.3 7.0 0.0 3.3 2 0 0 2 2 2 0 Interleukin-like EMT inducer FtsK_SpoIIIE PF01580.18 CQR58379.1 - 0.13 11.6 0.1 2.4 7.4 0.0 2.6 3 0 0 3 3 3 0 FtsK/SpoIIIE family DUF454 PF04304.13 CQR58379.1 - 2.7 8.0 6.5 4.8 7.2 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF454) Response_reg PF00072.24 CQR58380.1 - 1.4e-27 96.1 0.2 2.2e-27 95.4 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58380.1 - 3e-20 72.1 0.2 7.1e-20 70.9 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 CQR58380.1 - 0.041 14.2 0.0 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain FleQ PF06490.11 CQR58380.1 - 0.049 14.0 0.0 0.1 13.0 0.0 1.7 1 1 0 1 1 1 0 Flagellar regulatory protein FleQ RELT PF12606.8 CQR58380.1 - 0.13 11.3 0.0 0.37 9.8 0.0 1.7 2 0 0 2 2 2 0 Tumour necrosis factor receptor superfamily member 19 HATPase_c PF02518.26 CQR58381.1 - 7.6e-25 87.6 0.0 1.8e-24 86.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58381.1 - 5.5e-14 52.0 1.3 1.1e-13 51.0 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR58381.1 - 3e-11 43.5 0.0 5.8e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 HAMP domain SOR_SNZ PF01680.17 CQR58381.1 - 0.0042 16.9 0.1 0.64 9.8 0.0 2.1 1 1 1 2 2 2 2 SOR/SNZ family Anoctamin PF04547.12 CQR58381.1 - 0.41 9.4 1.2 0.58 8.9 1.2 1.2 1 0 0 1 1 1 0 Calcium-activated chloride channel Choline_transpo PF04515.12 CQR58381.1 - 0.55 9.4 3.8 0.79 8.9 3.8 1.1 1 0 0 1 1 1 0 Plasma-membrane choline transporter BPD_transp_1 PF00528.22 CQR58382.1 - 2.5e-18 66.5 15.6 2.5e-18 66.5 15.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58383.1 - 9.5e-10 38.5 28.1 9.5e-10 38.5 28.1 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 CQR58383.1 - 0.002 18.2 0.8 0.0055 16.8 0.8 1.7 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters TM_helix PF05552.12 CQR58383.1 - 0.25 11.3 10.9 0.5 10.4 0.3 3.7 4 0 0 4 4 4 0 Conserved TM helix DUF2615 PF11027.8 CQR58383.1 - 0.62 10.2 1.7 0.95 9.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2615) MHB PF16525.5 CQR58384.1 - 0.048 13.9 0.5 0.88 9.9 0.0 2.4 2 0 0 2 2 2 0 Haemophore, haem-binding DUF3558 PF12079.8 CQR58384.1 - 4.2 7.3 6.5 8 6.4 6.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) ABC_tran PF00005.27 CQR58385.1 - 5.8e-34 117.6 0.1 8.5e-34 117.0 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58385.1 - 4.3e-13 49.8 0.3 2.4e-06 27.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58385.1 - 1.4e-09 37.8 0.5 2.1e-09 37.1 0.5 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR58385.1 - 0.00013 21.6 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR58385.1 - 0.00018 21.3 0.3 0.002 17.9 0.2 2.0 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR58385.1 - 0.00039 20.4 0.1 0.00083 19.3 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 CQR58385.1 - 0.00063 18.7 0.0 0.68 8.7 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_19 PF13245.6 CQR58385.1 - 0.0007 19.9 0.2 0.0014 19.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR58385.1 - 0.0015 18.3 0.1 0.0028 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR58385.1 - 0.0065 16.8 0.3 0.056 13.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR58385.1 - 0.0077 16.4 0.2 0.016 15.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 CQR58385.1 - 0.016 14.4 0.2 0.02 14.1 0.2 1.4 1 1 0 1 1 1 0 G-protein alpha subunit MMR_HSR1 PF01926.23 CQR58385.1 - 0.021 14.9 0.2 0.053 13.6 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 CQR58385.1 - 0.024 14.4 0.1 0.069 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 CQR58385.1 - 0.024 14.2 0.1 0.29 10.7 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.6 CQR58385.1 - 0.027 15.0 1.9 0.2 12.1 2.0 2.1 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 CQR58385.1 - 0.028 14.2 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Lipoprotein_22 PF17294.2 CQR58385.1 - 0.032 13.9 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised lipoprotein family AAA_16 PF13191.6 CQR58385.1 - 0.04 14.3 0.5 0.073 13.4 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 CQR58385.1 - 0.062 13.5 0.1 0.51 10.6 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TsaE PF02367.17 CQR58385.1 - 0.067 13.2 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 CQR58385.1 - 0.073 12.0 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB BCA_ABC_TP_C PF12399.8 CQR58385.1 - 0.076 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter NACHT PF05729.12 CQR58385.1 - 0.088 12.7 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 CQR58385.1 - 0.091 13.0 0.4 0.28 11.4 0.4 2.0 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.6 CQR58385.1 - 0.16 12.5 0.2 0.57 10.7 0.2 2.1 1 1 0 2 2 1 0 AAA domain BPD_transp_1 PF00528.22 CQR58386.1 - 2.6e-21 76.2 17.3 3.5e-21 75.8 17.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Ocular_alb PF02101.15 CQR58386.1 - 0.023 13.6 0.1 0.033 13.1 0.1 1.2 1 0 0 1 1 1 0 Ocular albinism type 1 protein TRAM_LAG1_CLN8 PF03798.16 CQR58386.1 - 0.17 11.6 7.9 0.22 11.3 3.5 2.1 2 0 0 2 2 2 0 TLC domain PGA_cap PF09587.10 CQR58387.1 - 1.5e-48 165.5 0.0 2e-48 165.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap RHH_3 PF12651.7 CQR58387.1 - 0.11 12.5 0.5 1.3 9.1 0.0 2.5 3 0 0 3 3 3 0 Ribbon-helix-helix domain SBP_bac_3 PF00497.20 CQR58388.1 - 2e-42 145.2 0.2 2.3e-42 145.0 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 YhfZ_C PF14503.6 CQR58388.1 - 0.039 13.5 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 YhfZ C-terminal domain NMT1 PF09084.11 CQR58388.1 - 0.074 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 NMT1/THI5 like AraC_N PF06719.13 CQR58389.1 - 1.8e-50 170.5 0.2 2.9e-50 169.8 0.2 1.3 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus HTH_18 PF12833.7 CQR58389.1 - 4.2e-24 84.6 0.4 8.8e-24 83.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58389.1 - 3.1e-15 55.8 0.0 1.9e-09 37.4 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR58389.1 - 0.00024 21.0 0.0 0.00059 19.7 0.0 1.6 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_IclR PF09339.10 CQR58389.1 - 0.0051 16.6 0.1 0.024 14.4 0.1 2.2 1 1 0 1 1 1 1 IclR helix-turn-helix domain TetR_N PF00440.23 CQR58389.1 - 0.02 14.7 0.8 0.072 12.9 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family HTH_5 PF01022.20 CQR58389.1 - 0.029 14.2 0.6 0.17 11.8 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 CQR58389.1 - 0.031 14.3 0.1 0.12 12.3 0.1 2.0 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 CQR58389.1 - 0.069 12.7 0.1 0.41 10.3 0.0 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR58389.1 - 0.097 12.6 0.0 0.34 10.9 0.0 2.0 1 0 0 1 1 1 0 HTH domain Sigma70_r3 PF04539.16 CQR58389.1 - 0.15 12.2 1.3 0.37 10.9 0.1 2.2 3 0 0 3 3 3 0 Sigma-70 region 3 Atu4866 PF11512.8 CQR58390.1 - 2.5e-41 139.9 2.4 2.9e-41 139.7 2.4 1.0 1 0 0 1 1 1 1 Agrobacterium tumefaciens protein Atu4866 MFS_1 PF07690.16 CQR58391.1 - 3.3e-47 161.1 50.0 5.2e-31 107.9 24.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR58391.1 - 2.7e-11 43.0 37.9 1.1e-08 34.3 18.4 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR58391.1 - 3.2e-07 29.6 31.8 7.2e-06 25.1 10.8 2.3 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 CQR58391.1 - 7.8e-06 25.4 32.2 7.8e-06 25.4 32.2 1.8 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Transgly_assoc PF04226.13 CQR58391.1 - 0.0051 17.0 17.7 0.076 13.3 1.2 4.7 3 0 0 3 3 3 2 Transglycosylase associated protein ABC_membrane_2 PF06472.15 CQR58391.1 - 1.8 7.9 7.5 0.22 10.9 1.0 2.4 2 0 0 2 2 2 0 ABC transporter transmembrane region 2 Insulin_TMD PF17870.1 CQR58391.1 - 9.2 6.4 0.0 9.2 6.4 0.0 4.4 4 1 1 5 5 5 0 Insulin receptor trans-membrane segment SIS PF01380.22 CQR58392.1 - 8.5e-54 180.9 5.4 1.9e-27 95.7 0.4 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 CQR58392.1 - 7e-20 71.6 0.0 1.5e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 CQR58392.1 - 1.7e-15 57.0 0.0 3.8e-15 55.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 CQR58392.1 - 1.1e-05 24.4 0.1 0.00016 20.7 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 CQR58392.1 - 0.0029 17.6 3.9 0.018 15.1 0.0 3.1 2 1 0 2 2 2 1 SIS domain PK_C PF02887.16 CQR58392.1 - 0.022 15.0 0.5 0.22 11.8 0.1 2.6 1 1 1 2 2 2 0 Pyruvate kinase, alpha/beta domain Hydrolase_6 PF13344.6 CQR58392.1 - 0.044 13.9 1.8 0.66 10.1 0.1 3.3 3 1 0 4 4 4 0 Haloacid dehalogenase-like hydrolase DUF4105 PF13387.6 CQR58392.1 - 0.079 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) PGM_PMM_I PF02878.16 CQR58394.1 - 9.2e-43 145.3 0.0 1.6e-42 144.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 CQR58394.1 - 1.9e-31 108.6 0.3 3e-31 108.0 0.3 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 CQR58394.1 - 1.1e-20 74.2 0.0 2.4e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 CQR58394.1 - 7.8e-16 58.0 0.1 2.5e-15 56.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain YbbR PF07949.12 CQR58395.1 - 5.2e-33 113.2 18.9 1.8e-12 47.4 0.1 4.7 4 1 0 4 4 4 4 YbbR-like protein DisA_N PF02457.16 CQR58396.1 - 2.2e-43 146.6 0.1 3.2e-43 146.1 0.1 1.2 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF1652 PF07865.11 CQR58396.1 - 0.6 10.0 3.0 1.3 8.9 0.5 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1652) zf-HC2 PF13490.6 CQR58397.1 - 4.6e-09 36.4 3.8 7.6e-09 35.7 3.8 1.4 1 0 0 1 1 1 1 Putative zinc-finger Bactofilin PF04519.13 CQR58397.1 - 2e-05 24.8 1.2 2.9e-05 24.3 1.2 1.2 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Evr1_Alr PF04777.13 CQR58397.1 - 0.034 14.6 0.6 0.46 11.0 0.2 2.3 2 1 0 2 2 2 0 Erv1 / Alr family Phage_spike PF18715.1 CQR58397.1 - 0.093 12.8 1.1 0.18 11.9 1.1 1.5 1 1 0 1 1 1 0 Phage spike trimer E1-E2_ATPase PF00122.20 CQR58397.1 - 0.33 10.5 2.2 0.37 10.3 0.4 1.9 1 1 1 2 2 2 0 E1-E2 ATPase Sigma70_r2 PF04542.14 CQR58398.1 - 1.1e-25 89.1 1.0 1.8e-25 88.5 1.0 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR58398.1 - 6.5e-17 61.0 0.1 1.1e-16 60.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR58398.1 - 1.9e-10 40.1 0.1 3.4e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR58398.1 - 4.9e-07 29.8 0.6 1.5e-06 28.3 0.6 1.6 1 1 0 1 1 1 1 ECF sigma factor HTH_16 PF12645.7 CQR58398.1 - 3.4e-06 27.0 0.4 7.3e-06 25.9 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.14 CQR58398.1 - 0.0043 17.3 0.9 0.0093 16.2 0.1 1.9 2 1 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.6 CQR58398.1 - 0.045 13.6 0.3 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_WhiA PF02650.14 CQR58398.1 - 0.071 13.4 0.3 0.26 11.6 0.0 2.0 3 0 0 3 3 3 0 WhiA C-terminal HTH domain DUF746 PF05344.11 CQR58398.1 - 0.13 12.1 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) PEPcase PF00311.17 CQR58399.1 - 2.9e-301 1001.4 0.3 3.5e-301 1001.1 0.3 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 CQR58399.1 - 7.4e-06 24.7 0.3 2.2e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase OTCace PF00185.24 CQR58399.1 - 0.018 15.1 1.3 0.041 14.0 0.1 2.2 3 0 0 3 3 3 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Phage_holin_5_1 PF06946.11 CQR58400.1 - 3.8e-08 33.6 0.7 4.7e-08 33.3 0.7 1.0 1 0 0 1 1 1 1 Bacteriophage A118-like holin, Hol118 Phage_holin_5_2 PF16079.5 CQR58400.1 - 0.057 13.7 0.4 0.082 13.2 0.4 1.3 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V DUF2721 PF11026.8 CQR58400.1 - 0.06 13.2 0.7 0.098 12.5 0.4 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) ABC2_membrane_5 PF13346.6 CQR58400.1 - 0.09 12.3 0.5 0.12 11.9 0.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Peptidase_M15_4 PF13539.6 CQR58401.1 - 2.8e-20 72.6 0.7 5.1e-20 71.7 0.7 1.5 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase VanY PF02557.17 CQR58401.1 - 1.7e-10 40.8 0.0 2.5e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Cu_amine_oxidN1 PF07833.11 CQR58401.1 - 2.3e-08 34.4 0.1 6.6e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain 7tm_2 PF00002.24 CQR58402.1 - 0.71 9.1 7.6 0.1 11.8 4.1 1.4 2 0 0 2 2 2 0 7 transmembrane receptor (Secretin family) SPC25 PF06703.11 CQR58402.1 - 0.89 9.3 5.0 1.3 8.8 5.0 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF3290 PF11694.8 CQR58402.1 - 1.4 8.9 10.2 0.32 11.0 6.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) FeoB_associated PF12669.7 CQR58402.1 - 2.1 8.8 4.3 6 7.4 1.0 2.8 2 1 1 3 3 3 0 FeoB-associated Cys-rich membrane protein PalH PF08733.10 CQR58402.1 - 5.3 5.9 7.5 8.5 5.3 3.1 2.0 1 1 1 2 2 2 0 PalH/RIM21 Rnk_N PF14760.6 CQR58404.1 - 0.045 14.2 2.0 0.089 13.3 1.3 1.9 2 0 0 2 2 2 0 Rnk N-terminus FeoB_associated PF12669.7 CQR58404.1 - 0.61 10.5 4.3 0.89 10.0 4.3 1.1 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein XkdW PF09636.10 CQR58406.1 - 1.6e-17 63.5 0.3 1.2e-11 44.6 0.4 2.2 2 0 0 2 2 2 2 XkdW protein C1q PF00386.21 CQR58407.1 - 1.1e-05 25.6 0.1 2.1e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 C1q domain Pectinesterase PF01095.19 CQR58407.1 - 0.00043 19.1 0.2 0.00091 18.0 0.2 1.5 1 0 0 1 1 1 1 Pectinesterase DUF2313 PF10076.9 CQR58408.1 - 8.8e-36 123.2 0.0 1e-35 123.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2313) Tail_P2_I PF09684.10 CQR58408.1 - 0.026 14.5 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) Mtd_N PF18454.1 CQR58409.1 - 1.3e-15 57.1 0.6 2.1e-15 56.4 0.6 1.4 1 0 0 1 1 1 1 Major tropism determinant N-terminal domain EF-hand_1 PF00036.32 CQR58409.1 - 0.062 12.9 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 EF hand DUF2793 PF10983.8 CQR58410.1 - 1.2e-24 86.0 6.1 6.3e-23 80.5 4.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF2793) Mtd_N PF18454.1 CQR58410.1 - 1.6e-19 69.6 1.0 9.5e-19 67.1 0.1 2.8 3 0 0 3 3 3 1 Major tropism determinant N-terminal domain Baseplate_J PF04865.14 CQR58412.1 - 1.4e-54 184.9 0.0 1.8e-54 184.6 0.0 1.1 1 0 0 1 1 1 1 Baseplate J-like protein DUF2634 PF10934.8 CQR58413.1 - 5e-24 84.4 0.0 6.5e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) DUF2577 PF10844.8 CQR58414.1 - 1e-20 73.7 0.0 8.7e-20 70.8 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2577) LysM PF01476.20 CQR58416.1 - 6.7e-09 35.7 0.2 1.2e-08 34.8 0.2 1.5 1 0 0 1 1 1 1 LysM domain DUF948 PF06103.11 CQR58417.1 - 0.017 15.3 0.1 0.017 15.3 0.1 4.0 5 1 0 5 5 5 0 Bacterial protein of unknown function (DUF948) Hexose_dehydrat PF03559.14 CQR58417.1 - 0.064 12.7 0.1 3.6 7.0 0.0 2.4 2 0 0 2 2 2 0 NDP-hexose 2,3-dehydratase Cytomega_UL84 PF06284.11 CQR58417.1 - 0.96 7.8 2.3 1.4 7.3 2.3 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein Phage_TAC_5 PF08890.11 CQR58418.1 - 5.5e-44 149.5 0.1 6.1e-44 149.3 0.1 1.0 1 0 0 1 1 1 1 Phage XkdN-like tail assembly chaperone protein, TAC DUF2001 PF09393.10 CQR58419.1 - 2.9e-51 173.1 1.0 3.3e-51 172.9 1.0 1.0 1 0 0 1 1 1 1 Phage tail tube protein Phage_sheath_1 PF04984.14 CQR58420.1 - 1.7e-30 106.1 1.3 1.7e-30 106.1 1.3 1.6 2 0 0 2 2 2 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1C PF17482.2 CQR58420.1 - 9.8e-29 99.4 0.8 1.9e-28 98.4 0.8 1.5 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Phage_sheath_1N PF17481.2 CQR58420.1 - 1e-10 42.0 3.0 1e-10 42.0 3.0 2.6 3 0 0 3 3 3 1 Phage tail sheath protein beta-sandwich domain Vir_act_alpha_C PF10400.9 CQR58422.1 - 0.049 14.3 0.1 1.6 9.5 0.1 2.1 1 1 1 2 2 2 0 Virulence activator alpha C-term DUF1439 PF07273.12 CQR58422.1 - 0.16 11.8 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1439) Inhibitor_I9 PF05922.16 CQR58423.1 - 0.081 13.6 0.0 0.19 12.4 0.0 1.6 1 0 0 1 1 1 0 Peptidase inhibitor I9 HTH_31 PF13560.6 CQR58424.1 - 1.1e-18 67.3 0.0 1.5e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR58424.1 - 1.7e-17 63.2 0.2 3.4e-17 62.2 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR58424.1 - 3.8e-15 55.7 0.3 5.3e-15 55.2 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 CQR58424.1 - 9e-08 32.4 0.0 1.5e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 CQR58424.1 - 6.9e-06 25.8 0.1 1.1e-05 25.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 CQR58424.1 - 0.00087 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 CQR58424.1 - 0.045 13.6 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family MarR PF01047.22 CQR58424.1 - 0.054 13.4 0.0 0.18 11.8 0.0 1.8 2 0 0 2 2 2 0 MarR family Sigma70_r4 PF04545.16 CQR58424.1 - 0.092 12.3 0.0 1.7 8.3 0.1 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 CQR58424.1 - 0.14 12.1 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 CQR58424.1 - 0.21 11.2 0.6 0.59 9.7 0.5 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Peptidase_M78 PF06114.13 CQR58425.1 - 2e-16 60.0 0.0 2.3e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 IrrE N-terminal-like domain SpoIIM PF01944.17 CQR58427.1 - 1.5e-33 116.1 17.3 1.8e-33 115.8 17.3 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M Tmemb_14 PF03647.13 CQR58427.1 - 0.94 10.3 13.7 0.09 13.5 2.8 2.9 2 2 1 3 3 3 0 Transmembrane proteins 14C DUF1129 PF06570.11 CQR58427.1 - 2.6 7.5 7.1 0.4 10.1 1.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) Polysacc_deac_1 PF01522.21 CQR58428.1 - 1.8e-28 98.9 0.0 2.9e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 CQR58428.1 - 0.0001 21.6 0.0 0.00037 19.8 0.0 1.9 1 1 1 2 2 2 1 Glycosyl hydrolase family 57 Nif11 PF07862.11 CQR58428.1 - 0.023 15.0 0.0 3.4 8.0 0.0 3.0 4 0 0 4 4 4 0 Nif11 domain NYN PF01936.18 CQR58428.1 - 0.028 14.9 0.0 0.15 12.5 0.0 2.0 2 0 0 2 2 2 0 NYN domain MMM1 PF10296.9 CQR58428.1 - 0.035 13.1 0.1 0.042 12.9 0.1 1.1 1 0 0 1 1 1 0 Maintenance of mitochondrial morphology protein 1 DUF2334 PF10096.9 CQR58428.1 - 0.08 12.6 0.1 0.28 10.8 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_2 PF04748.13 CQR58428.1 - 0.087 12.0 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase PPK2 PF03976.14 CQR58429.1 - 1.9e-69 233.7 2.0 2.4e-69 233.3 2.0 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) DUF3492 PF11997.8 CQR58429.1 - 0.081 12.7 1.8 3.9 7.1 0.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3492) RIC3 PF15361.6 CQR58429.1 - 1.8 9.0 3.7 8.7 6.7 0.8 2.2 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 KbaA PF14089.6 CQR58430.1 - 7e-54 182.4 13.7 8.5e-54 182.1 13.7 1.1 1 0 0 1 1 1 1 KinB-signalling pathway activation in sporulation GerD PF17898.1 CQR58431.1 - 2.4e-37 127.4 13.9 2.3e-35 121.0 10.1 2.1 2 0 0 2 2 2 2 Spore germination GerD central core domain ABC_tran_CTD PF16326.5 CQR58431.1 - 0.0011 19.2 0.4 1.8 8.9 0.0 2.7 3 0 0 3 3 3 2 ABC transporter C-terminal domain DUF4969 PF16339.5 CQR58431.1 - 0.014 15.7 0.1 0.11 12.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4969) Choline_kin_N PF04428.14 CQR58431.1 - 0.015 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Choline kinase N terminus STI1 PF17830.1 CQR58431.1 - 0.034 14.1 6.4 12 5.9 3.7 3.4 2 1 1 3 3 3 0 STI1 domain ParA PF10609.9 CQR58432.1 - 1.7e-88 296.2 0.0 2.4e-88 295.7 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 CQR58432.1 - 8.4e-14 51.7 0.1 1.4e-13 51.0 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 CQR58432.1 - 4.9e-12 46.1 0.1 1.3e-10 41.5 0.2 2.2 2 0 0 2 2 2 1 AAA domain FeS_assembly_P PF01883.19 CQR58432.1 - 6.9e-08 32.5 0.0 1.7e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein MipZ PF09140.11 CQR58432.1 - 7.6e-08 32.0 0.2 1.3e-07 31.2 0.2 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 CQR58432.1 - 7.7e-07 28.8 0.1 2.7e-05 23.8 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 CQR58432.1 - 4.8e-06 26.0 0.9 7.1e-06 25.4 0.2 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 CQR58432.1 - 0.00012 21.5 0.1 0.00019 20.8 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 CQR58432.1 - 0.00034 20.2 0.2 0.011 15.3 0.2 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 CQR58432.1 - 0.00035 20.2 0.1 0.0019 17.8 0.1 2.0 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 CQR58432.1 - 0.0021 17.1 0.2 0.0043 16.1 0.2 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 CQR58432.1 - 0.0024 17.7 0.0 0.0036 17.1 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 CQR58432.1 - 0.0081 15.8 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_26 PF13500.6 CQR58432.1 - 0.011 15.6 0.2 1.9 8.3 0.4 2.9 3 0 0 3 3 3 0 AAA domain FTHFS PF01268.19 CQR58432.1 - 0.057 11.6 0.1 0.1 10.8 0.1 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase APS_kinase PF01583.20 CQR58432.1 - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 CQR58432.1 - 0.11 13.0 0.7 2.9 8.4 0.1 2.6 2 1 0 2 2 2 0 AAA domain Amidase_3 PF01520.18 CQR58433.1 - 1.5e-48 165.2 0.0 1.8e-48 165.0 0.0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase Tautomerase_3 PF14832.6 CQR58433.1 - 0.07 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme ATP-sulfurylase PF01747.17 CQR58434.1 - 1.6e-94 315.3 0.0 2.3e-94 314.8 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 CQR58434.1 - 2.4e-52 176.8 0.0 3.7e-52 176.2 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain zn-ribbon_14 PF16503.5 CQR58434.1 - 0.27 10.8 1.1 0.48 10.0 1.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon PAPS_reduct PF01507.19 CQR58435.1 - 1.8e-49 168.1 0.0 2.2e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Phage_XkdX PF09693.10 CQR58436.1 - 2.3e-11 43.5 1.0 2.6e-11 43.4 1.0 1.1 1 0 0 1 1 1 1 Phage uncharacterised protein (Phage_XkdX) XkdW PF09636.10 CQR58437.1 - 2.1e-19 69.6 1.5 2.7e-19 69.2 1.5 1.2 1 1 0 1 1 1 1 XkdW protein Soyouz_module PF14313.6 CQR58437.1 - 0.084 12.7 0.6 0.17 11.7 0.6 1.5 1 0 0 1 1 1 0 N-terminal region of Paramyxovirinae phosphoprotein (P) DUF3751 PF12571.8 CQR58438.1 - 6.4e-07 29.6 0.1 1.4e-06 28.4 0.1 1.6 1 0 0 1 1 1 1 Phage tail-collar fibre protein Tail_P2_I PF09684.10 CQR58439.1 - 1.3e-22 80.2 0.1 1.9e-22 79.7 0.1 1.2 1 0 0 1 1 1 1 Phage tail protein (Tail_P2_I) Baseplate_J PF04865.14 CQR58440.1 - 5.7e-57 192.8 0.3 8.5e-57 192.2 0.3 1.2 1 0 0 1 1 1 1 Baseplate J-like protein GPW_gp25 PF04965.14 CQR58441.1 - 6.1e-07 29.1 0.1 7.4e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme Neural_ProG_Cyt PF06567.11 CQR58441.1 - 0.03 14.5 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain DUF2634 PF10934.8 CQR58441.1 - 0.033 14.3 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) Phage_P2_GpU PF06995.11 CQR58442.1 - 6.7e-30 103.2 0.0 8.1e-30 102.9 0.0 1.1 1 0 0 1 1 1 1 Phage P2 GpU Phage_base_V PF04717.12 CQR58443.1 - 1.4e-06 28.2 0.0 1.9e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Type VI secretion system, phage-baseplate injector Phage_GPD PF05954.11 CQR58444.1 - 1.5e-10 40.8 0.0 2.1e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) PhageMin_Tail PF10145.9 CQR58445.1 - 4.7e-13 49.4 26.5 4.7e-13 49.4 26.5 7.4 3 3 2 5 5 5 1 Phage-related minor tail protein ANTAR PF03861.14 CQR58445.1 - 0.054 13.3 0.1 0.5 10.3 0.0 2.8 2 0 0 2 2 2 0 ANTAR domain DUF948 PF06103.11 CQR58445.1 - 0.12 12.7 15.3 3.2 8.1 2.7 6.4 5 1 2 7 7 7 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 CQR58445.1 - 0.47 10.5 12.6 6.1 6.9 0.6 5.2 5 1 0 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus CAP PF00188.26 CQR58445.1 - 0.85 10.5 4.3 0.52 11.1 0.4 2.4 2 1 0 2 2 2 0 Cysteine-rich secretory protein family DUF4315 PF14193.6 CQR58445.1 - 1.6 8.8 7.2 0.44 10.6 0.1 3.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4315) Phage_TAC_7 PF10109.9 CQR58446.1 - 2.9e-06 27.3 0.0 3.6e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Phage tail assembly chaperone proteins, E, or 41 or 14 Phage_tube PF04985.14 CQR58447.1 - 8.7e-41 139.4 0.0 9.8e-41 139.2 0.0 1.0 1 0 0 1 1 1 1 Phage tail tube protein FII DUF1726 PF08351.11 CQR58447.1 - 0.16 12.0 0.1 12 5.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1726) Phage_sheath_1C PF17482.2 CQR58448.1 - 0.00054 19.9 0.0 0.00088 19.2 0.0 1.3 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Sigma70_r4_2 PF08281.12 CQR58451.1 - 2.3e-08 33.6 0.6 3.9e-08 32.8 0.6 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 CQR58451.1 - 1.7e-05 24.3 0.0 3.2e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 CQR58451.1 - 2.9e-05 23.5 0.1 6e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 CQR58451.1 - 0.011 15.5 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.22 CQR58452.1 - 8.5e-06 25.7 0.0 2.2e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 CQR58452.1 - 0.00033 21.0 0.0 0.00062 20.2 0.0 1.5 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Death PF00531.22 CQR58452.1 - 0.0093 16.1 0.0 14 5.9 0.0 3.0 2 1 0 3 3 3 1 Death domain RGS PF00615.19 CQR58452.1 - 0.023 15.0 0.8 0.036 14.3 0.8 1.3 1 0 0 1 1 1 0 Regulator of G protein signaling domain HTH_19 PF12844.7 CQR58452.1 - 0.025 14.6 0.0 0.096 12.7 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR58452.1 - 0.036 14.2 0.0 0.14 12.4 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 CQR58452.1 - 0.044 14.1 0.0 0.077 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 CQR58452.1 - 0.084 12.7 0.0 4.2 7.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 CQR58452.1 - 0.17 11.7 0.0 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Peptidase_M78 PF06114.13 CQR58453.1 - 1.3e-09 38.0 0.0 2.3e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain Ribosomal_S9 PF00380.19 CQR58454.1 - 8.2e-48 161.9 0.2 9.3e-48 161.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 CQR58455.1 - 9.4e-55 184.2 0.5 1.1e-54 184.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 CdhC PF03598.15 CQR58455.1 - 0.071 13.0 0.0 0.08 12.8 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit PseudoU_synth_1 PF01416.20 CQR58456.1 - 5.6e-42 142.6 0.0 2e-27 95.8 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF2344 PF10105.9 CQR58456.1 - 0.022 14.6 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) Ribosomal_L17 PF01196.19 CQR58457.1 - 4.6e-40 136.4 0.1 5.3e-40 136.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L17 RNA_pol_A_CTD PF03118.15 CQR58458.1 - 1.2e-29 101.8 6.2 2.8e-29 100.7 6.2 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.24 CQR58458.1 - 4.1e-26 90.2 0.0 1e-25 88.9 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_bac PF01000.26 CQR58458.1 - 1.5e-25 89.8 0.2 3.8e-25 88.4 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain PASTA PF03793.19 CQR58458.1 - 0.00041 20.1 0.1 1 9.3 0.0 2.8 2 0 0 2 2 2 2 PASTA domain HHH_5 PF14520.6 CQR58458.1 - 0.066 13.8 0.0 0.31 11.7 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S11 PF00411.19 CQR58459.1 - 1.4e-52 176.7 1.3 1.7e-52 176.4 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 LPD7 PF18821.1 CQR58459.1 - 0.028 14.6 0.7 0.16 12.2 0.2 1.9 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 7 YdjC PF04794.12 CQR58459.1 - 0.13 12.2 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 YdjC-like protein Ribosomal_S13 PF00416.22 CQR58460.1 - 4.1e-37 127.4 7.9 1.6e-35 122.2 7.9 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 CQR58460.1 - 0.0039 16.0 0.0 0.0042 15.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF4431 PF14485.6 CQR58460.1 - 0.012 15.4 0.1 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4431) Phage_TAC_5 PF08890.11 CQR58460.1 - 0.032 14.2 0.5 0.052 13.5 0.5 1.4 1 0 0 1 1 1 0 Phage XkdN-like tail assembly chaperone protein, TAC Ribosomal_L36 PF00444.18 CQR58461.1 - 1.8e-19 69.6 9.5 1.9e-19 69.6 9.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L36 eIF-1a PF01176.19 CQR58462.1 - 1.2e-27 95.5 0.0 1.4e-27 95.3 0.0 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 CQR58462.1 - 0.0078 15.9 0.0 0.009 15.7 0.0 1.2 1 0 0 1 1 1 1 RsgA N-terminal domain KOW PF00467.29 CQR58463.1 - 0.0095 15.9 2.1 0.01 15.7 0.7 1.8 2 0 0 2 2 2 1 KOW motif Sushi_2 PF09014.10 CQR58463.1 - 0.099 12.5 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Beta-2-glycoprotein-1 fifth domain Peptidase_M24 PF00557.24 CQR58464.1 - 6.7e-56 189.3 0.1 7.5e-56 189.1 0.1 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 ADK PF00406.22 CQR58465.1 - 8.7e-55 185.0 0.0 1e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 CQR58465.1 - 3.1e-25 89.2 0.1 5.9e-25 88.3 0.0 1.4 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 CQR58465.1 - 2.3e-17 62.6 0.3 3.6e-17 62.1 0.3 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 CQR58465.1 - 2.5e-06 27.9 0.8 0.00013 22.4 0.2 2.1 1 1 1 2 2 2 1 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 CQR58465.1 - 0.00059 20.0 0.0 0.001 19.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 CQR58465.1 - 0.002 18.6 0.0 0.0042 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 CQR58465.1 - 0.0047 17.3 0.1 0.0085 16.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 CQR58465.1 - 0.0062 16.3 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Cytidylate_kin PF02224.18 CQR58465.1 - 0.024 14.4 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase Prok-RING_1 PF14446.6 CQR58465.1 - 0.19 11.7 0.4 0.33 10.9 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 SecY PF00344.20 CQR58466.1 - 6.4e-113 377.0 27.4 7.7e-113 376.8 27.4 1.1 1 0 0 1 1 1 1 SecY translocase NADH-u_ox-rdase PF10785.9 CQR58466.1 - 0.019 15.7 1.0 0.13 13.0 0.1 2.6 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit 60KD_IMP PF02096.20 CQR58466.1 - 0.025 14.5 1.0 0.025 14.5 1.0 3.1 1 1 1 2 2 2 0 60Kd inner membrane protein Ribosomal_L27A PF00828.19 CQR58467.1 - 2.8e-40 137.9 2.3 3.4e-40 137.7 2.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 CQR58468.1 - 1.2e-20 73.2 1.1 1.3e-20 73.0 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 CQR58469.1 - 1.6e-32 111.3 1.3 2.5e-32 110.6 1.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 CQR58469.1 - 1.4e-31 107.7 0.1 2.1e-31 107.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.22 CQR58470.1 - 1.3e-49 167.4 1.4 1.5e-49 167.2 1.4 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast tRNA_anti_2 PF13742.6 CQR58470.1 - 0.02 15.1 0.0 0.028 14.6 0.0 1.4 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain NAD_binding_10 PF13460.6 CQR58470.1 - 0.039 13.8 1.1 0.25 11.2 0.2 2.1 2 1 0 2 2 2 0 NAD(P)H-binding GRDB PF07355.12 CQR58470.1 - 0.089 12.0 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Ribosomal_S25 PF03297.15 CQR58470.1 - 0.096 12.9 0.1 0.25 11.6 0.1 1.6 2 0 0 2 2 2 0 S25 ribosomal protein Ste5_C PF12194.8 CQR58470.1 - 0.15 12.0 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein kinase Fus3-binding Ribosomal_L6 PF00347.23 CQR58471.1 - 1.4e-44 150.6 11.3 6e-24 84.5 3.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 CQR58472.1 - 1.3e-54 183.5 0.1 1.5e-54 183.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Arabinose_Isome PF02610.15 CQR58472.1 - 0.054 12.7 0.0 0.067 12.4 0.0 1.1 1 0 0 1 1 1 0 L-arabinose isomerase Ribosomal_L5_C PF00673.21 CQR58473.1 - 4.3e-42 142.2 0.0 7.1e-42 141.5 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 CQR58473.1 - 7.1e-30 103.1 2.0 1.3e-29 102.2 2.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 DUF2660 PF10859.8 CQR58473.1 - 0.025 15.0 0.1 0.073 13.5 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2660) ribosomal_L24 PF17136.4 CQR58474.1 - 5.2e-31 106.8 3.5 5.2e-31 106.8 3.5 1.9 2 0 0 2 2 2 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 KOW PF00467.29 CQR58474.1 - 1.3e-07 31.3 1.1 1.3e-07 31.3 1.1 2.8 3 1 0 3 3 3 1 KOW motif SH3_2 PF07653.17 CQR58474.1 - 0.0047 16.6 0.2 0.011 15.5 0.2 1.7 1 1 0 1 1 1 1 Variant SH3 domain Ribosomal_L14 PF00238.19 CQR58475.1 - 1.9e-54 183.0 0.6 2.1e-54 182.8 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 CQR58476.1 - 1.5e-31 108.2 5.7 1.8e-31 108.0 5.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L29 PF00831.23 CQR58477.1 - 4.6e-26 90.6 1.8 5.1e-26 90.4 1.8 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.11 CQR58477.1 - 0.00079 19.4 2.4 0.66 10.1 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1192) Ribosomal_L16 PF00252.18 CQR58478.1 - 8.7e-53 177.9 1.8 9.8e-53 177.7 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_S3_C PF00189.20 CQR58479.1 - 3.4e-40 136.4 1.5 3.4e-40 136.4 1.5 2.0 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 CQR58479.1 - 2.8e-18 65.5 3.4 2.8e-18 65.5 3.4 1.8 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 CQR58479.1 - 0.00033 20.5 0.7 0.00061 19.6 0.7 1.5 1 0 0 1 1 1 1 KH domain Ribosomal_L22 PF00237.19 CQR58480.1 - 7.5e-35 119.3 0.7 8.4e-35 119.1 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e TINF2_N PF14973.6 CQR58480.1 - 0.13 12.7 0.0 0.16 12.3 0.0 1.1 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus Ribosomal_S19 PF00203.21 CQR58481.1 - 6.8e-36 122.0 0.1 7.6e-36 121.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.18 CQR58482.1 - 7e-58 194.3 1.2 7e-58 194.3 1.2 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 CQR58482.1 - 3.1e-35 120.0 2.1 6.3e-35 119.0 2.1 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 CQR58483.1 - 9.8e-33 112.4 2.3 1.1e-32 112.3 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L4 PF00573.22 CQR58484.1 - 3.4e-73 245.4 0.2 3.8e-73 245.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DHHA1 PF02272.19 CQR58484.1 - 0.068 13.6 0.2 0.12 12.8 0.2 1.4 1 0 0 1 1 1 0 DHHA1 domain Ribosomal_L3 PF00297.22 CQR58485.1 - 1.3e-21 77.1 6.5 5.5e-18 65.1 2.5 2.8 2 1 1 3 3 3 2 Ribosomal protein L3 Ribosomal_S10 PF00338.22 CQR58486.1 - 2.2e-36 124.0 0.1 2.4e-36 123.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Protoglobin PF11563.8 CQR58487.1 - 2.6e-41 141.2 2.6 5.1e-41 140.2 2.6 1.5 1 0 0 1 1 1 1 Protoglobin MCPsignal PF00015.21 CQR58487.1 - 2.7e-27 95.7 17.9 2.7e-27 95.7 17.9 2.5 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain CppA_N PF14506.6 CQR58487.1 - 0.019 15.1 0.7 0.19 11.8 0.1 2.7 3 0 0 3 3 3 0 CppA N-terminal BLOC1_2 PF10046.9 CQR58487.1 - 0.066 13.5 15.3 0.082 13.2 0.3 4.9 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 CQR58487.1 - 0.11 12.8 18.3 0.67 10.2 2.3 5.0 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF2935 PF11155.8 CQR58487.1 - 0.29 11.5 3.9 0.49 10.7 0.8 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) GLE1 PF07817.13 CQR58487.1 - 3.9 6.6 7.7 1.5 8.0 0.6 3.0 2 1 1 3 3 3 0 GLE1-like protein Casc1_N PF15927.5 CQR58487.1 - 5.4 6.7 9.9 0.24 11.1 2.6 2.4 3 0 0 3 3 3 0 Cancer susceptibility candidate 1 N-terminus cNMP_binding PF00027.29 CQR58488.1 - 5.6e-20 71.2 0.0 9.9e-20 70.4 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR58488.1 - 2e-16 59.7 0.1 3.7e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 CQR58488.1 - 0.0016 18.1 0.0 0.0032 17.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_8 PF02954.19 CQR58488.1 - 0.012 15.4 1.0 2.1 8.2 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 CQR58488.1 - 0.082 13.0 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 CQR58488.1 - 0.089 12.7 0.2 0.29 11.1 0.1 1.9 2 0 0 2 2 2 0 MarR family Cupin_2 PF07883.11 CQR58489.1 - 1.9e-11 43.5 0.1 5.9e-11 41.9 0.0 1.7 1 1 1 2 2 2 1 Cupin domain Auxin_BP PF02041.16 CQR58489.1 - 9.5e-05 22.1 0.0 0.00013 21.6 0.0 1.4 1 1 0 1 1 1 1 Auxin binding protein PCO_ADO PF07847.12 CQR58489.1 - 0.0034 16.9 0.0 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 PCO_ADO Cupin_1 PF00190.22 CQR58489.1 - 0.0044 16.6 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Cupin Pirin_C_2 PF17954.1 CQR58489.1 - 0.0051 17.0 0.0 0.0064 16.6 0.0 1.2 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain DMSP_lyase PF16867.5 CQR58489.1 - 0.0064 16.1 0.0 0.007 16.0 0.0 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase AraC_binding PF02311.19 CQR58489.1 - 0.01 15.7 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_7 PF12973.7 CQR58489.1 - 0.015 15.2 0.0 0.018 14.9 0.0 1.4 1 1 0 1 1 1 0 ChrR Cupin-like domain CDO_I PF05995.12 CQR58489.1 - 0.017 14.4 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Cysteine dioxygenase type I GTP_EFTU PF00009.27 CQR58490.1 - 5.9e-60 202.1 0.0 1.1e-59 201.3 0.0 1.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 CQR58490.1 - 3.4e-33 114.3 1.2 4.7e-33 113.8 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 CQR58490.1 - 3.9e-17 62.4 3.6 1.1e-16 60.9 3.7 1.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 CQR58490.1 - 2.2e-05 24.5 0.0 4.8e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 CQR58490.1 - 0.0085 15.7 0.0 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 CQR58490.1 - 0.048 13.6 0.0 0.14 12.1 0.0 1.7 1 1 1 2 2 2 0 RsgA GTPase GTP_EFTU PF00009.27 CQR58491.1 - 7.6e-67 224.6 0.5 1.1e-66 224.1 0.5 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 CQR58491.1 - 2.9e-43 146.5 0.1 6.1e-43 145.5 0.1 1.6 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 CQR58491.1 - 1.3e-34 118.1 0.1 4e-34 116.5 0.1 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 CQR58491.1 - 3.3e-34 116.8 0.7 9.1e-34 115.4 0.2 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 CQR58491.1 - 1.5e-15 57.3 0.3 5.4e-15 55.5 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RF3_C PF16658.5 CQR58491.1 - 6.4e-06 26.0 0.0 1.4e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 CQR58491.1 - 0.00044 20.3 0.3 0.0027 17.8 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase AIG1 PF04548.16 CQR58491.1 - 0.0011 18.4 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 AIG1 family ARL2_Bind_BART PF11527.8 CQR58491.1 - 0.15 12.2 0.1 0.32 11.1 0.1 1.5 1 0 0 1 1 1 0 The ARF-like 2 binding protein BART Ribosomal_S7 PF00177.21 CQR58492.1 - 1.9e-65 219.1 0.6 2.1e-65 218.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF3646 PF12362.8 CQR58492.1 - 0.096 13.0 0.2 0.2 12.0 0.1 1.8 1 1 1 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal Ribosom_S12_S23 PF00164.25 CQR58493.1 - 5.4e-36 122.7 0.8 8.5e-36 122.0 0.8 1.4 1 1 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_L7Ae PF01248.26 CQR58494.1 - 1.8e-12 46.8 0.6 2e-12 46.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Tnp_DNA_bind PF14706.6 CQR58494.1 - 0.042 13.7 0.0 0.066 13.1 0.0 1.5 1 1 0 1 1 1 0 Transposase DNA-binding DUF1694 PF07997.11 CQR58494.1 - 0.047 13.8 0.0 0.049 13.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1694) SpoU_sub_bind PF08032.12 CQR58494.1 - 0.092 13.0 0.0 0.25 11.7 0.0 1.6 1 1 1 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding RNA_pol_Rpb1_1 PF04997.12 CQR58495.1 - 9e-90 301.2 0.0 2.4e-89 299.7 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 CQR58495.1 - 3.1e-73 246.5 1.1 2.6e-71 240.2 1.1 2.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 CQR58495.1 - 1.7e-40 139.0 0.1 7.1e-29 101.2 0.0 2.9 2 1 1 3 3 3 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 CQR58495.1 - 5.9e-30 104.3 0.1 1.3e-29 103.2 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 CQR58495.1 - 2e-12 47.0 0.0 6.2e-12 45.4 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Apocytochr_F_C PF01333.19 CQR58495.1 - 0.0048 16.9 0.2 0.015 15.3 0.2 1.8 1 0 0 1 1 1 1 Apocytochrome F, C-terminal RNA_pol_Rpb2_6 PF00562.28 CQR58496.1 - 3.8e-165 549.7 0.1 1.1e-164 548.2 0.1 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_2 PF04561.14 CQR58496.1 - 3.9e-39 134.2 0.3 1.3e-29 103.2 0.0 2.4 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 CQR58496.1 - 2.9e-31 107.4 0.0 6.7e-31 106.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_1 PF04563.15 CQR58496.1 - 6.2e-29 101.0 0.0 2.3e-28 99.1 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 CQR58496.1 - 3.8e-27 94.5 0.0 8.4e-27 93.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_45 PF10385.9 CQR58496.1 - 2.4e-25 88.5 2.7 4.3e-24 84.6 3.0 2.9 3 0 0 3 3 3 1 RNA polymerase beta subunit external 1 domain Biotin_lipoyl_2 PF13533.6 CQR58496.1 - 0.14 12.0 0.5 0.95 9.3 0.1 2.5 2 0 0 2 2 2 0 Biotin-lipoyl like MTS PF05175.14 CQR58497.1 - 7.7e-53 178.5 0.0 8.9e-53 178.3 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 CQR58497.1 - 4.1e-21 75.4 0.0 5e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR58497.1 - 6.5e-15 55.6 0.0 9.8e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 CQR58497.1 - 1.5e-14 54.1 0.1 1.7e-14 54.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 CQR58497.1 - 5.8e-10 39.7 0.0 9.5e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58497.1 - 8.8e-10 39.2 0.0 1.3e-09 38.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 CQR58497.1 - 1.9e-08 34.4 0.0 2.7e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 CQR58497.1 - 2.6e-08 33.9 0.0 3.3e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 CQR58497.1 - 2.7e-08 33.8 0.0 3.6e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 CQR58497.1 - 1.3e-07 31.6 0.1 1.8e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 CQR58497.1 - 3e-07 30.0 0.0 3.5e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 CQR58497.1 - 3.1e-07 30.3 0.4 1.7e-06 27.8 0.4 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 CQR58497.1 - 3.2e-07 30.2 0.0 4.4e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 CQR58497.1 - 5.1e-07 29.2 0.0 6.3e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.20 CQR58497.1 - 1.5e-05 24.4 0.0 2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 CQR58497.1 - 2e-05 24.1 0.0 3.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase GCD14 PF08704.10 CQR58497.1 - 8.4e-05 22.4 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 CQR58497.1 - 8.9e-05 22.2 0.0 0.00013 21.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 CQR58497.1 - 0.00012 21.6 0.0 0.00015 21.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB TrkA_N PF02254.18 CQR58497.1 - 0.00015 22.0 0.0 0.00022 21.5 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain Methyltransf_16 PF10294.9 CQR58497.1 - 0.00039 20.2 0.1 0.00056 19.7 0.1 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_15 PF09445.10 CQR58497.1 - 0.00071 19.2 0.0 0.00096 18.8 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF43 PF01861.16 CQR58497.1 - 0.00079 18.7 0.0 0.0011 18.3 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain FmrO PF07091.11 CQR58497.1 - 0.0025 17.4 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.20 CQR58497.1 - 0.0025 16.9 0.0 0.0034 16.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 CQR58497.1 - 0.0027 17.4 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltr_RsmB-F PF01189.17 CQR58497.1 - 0.0087 15.7 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_32 PF13679.6 CQR58497.1 - 0.019 15.0 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.16 CQR58497.1 - 0.019 14.2 0.0 0.022 13.9 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_3 PF01596.17 CQR58497.1 - 0.045 12.9 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase N6_Mtase PF02384.16 CQR58497.1 - 0.088 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase N6_N4_Mtase PF01555.18 CQR58497.1 - 0.094 12.4 0.0 3 7.5 0.0 2.1 2 0 0 2 2 2 0 DNA methylase tRNA_U5-meth_tr PF05958.11 CQR58497.1 - 0.16 10.9 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Ribosomal_L12 PF00542.19 CQR58498.1 - 3.6e-33 113.7 7.4 3.6e-33 113.7 7.4 2.0 2 0 0 2 2 2 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 CQR58498.1 - 8.1e-22 76.7 9.5 2e-19 69.0 6.5 2.5 2 0 0 2 2 2 2 Ribosomal protein L7/L12 dimerisation domain HTH_33 PF13592.6 CQR58498.1 - 0.11 12.1 0.4 4.7 6.9 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn helix Ribosomal_L10 PF00466.20 CQR58499.1 - 1.4e-25 89.4 1.1 1.9e-25 88.9 1.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L10 BAR_3_WASP_bdg PF10456.9 CQR58499.1 - 0.013 14.9 0.2 0.017 14.6 0.2 1.1 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein Catalase_C PF18011.1 CQR58499.1 - 0.072 12.7 1.3 0.1 12.3 0.6 1.6 1 1 1 2 2 2 0 C-terminal domain found in long catalases Ribosomal_L1 PF00687.21 CQR58500.1 - 2.8e-56 190.5 0.0 3.7e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 CQR58501.1 - 3e-34 116.7 0.6 5.4e-34 115.8 0.6 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 CQR58501.1 - 1.7e-25 89.3 2.2 2.9e-25 88.5 2.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain NusG PF02357.19 CQR58502.1 - 2.5e-28 98.4 0.3 4.1e-28 97.7 0.3 1.3 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 CQR58502.1 - 0.00082 19.2 0.2 0.0028 17.5 0.2 2.0 1 0 0 1 1 1 1 KOW motif IF3_C PF00707.22 CQR58502.1 - 0.096 12.7 1.8 0.3 11.1 0.1 2.3 2 1 0 2 2 2 0 Translation initiation factor IF-3, C-terminal domain SecE PF00584.20 CQR58503.1 - 2.7e-21 75.2 2.9 3e-21 75.1 2.9 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex VEGFR-2_TMD PF17988.1 CQR58503.1 - 0.12 11.8 5.4 0.18 11.2 5.3 1.5 1 1 0 1 1 1 0 VEGFR-2 Transmembrane domain ATP_synth_reg PF14960.6 CQR58503.1 - 0.21 11.1 1.7 0.37 10.3 1.7 1.3 1 0 0 1 1 1 0 ATP synthase regulation Sigma70_r2 PF04542.14 CQR58504.1 - 1e-13 50.8 0.1 2.2e-13 49.7 0.1 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR58504.1 - 2.4e-10 39.9 0.4 4.5e-10 39.0 0.4 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 CQR58504.1 - 4.5e-05 22.9 0.1 7.4e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_16 PF12645.7 CQR58504.1 - 0.00065 19.7 0.3 0.011 15.7 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 CQR58504.1 - 0.0012 18.6 0.1 0.0027 17.4 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 CQR58504.1 - 0.0045 16.7 0.0 0.02 14.7 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 CQR58504.1 - 0.015 15.2 0.2 0.036 14.0 0.2 1.6 1 1 0 1 1 1 0 ECF sigma factor HTH_28 PF13518.6 CQR58504.1 - 0.019 15.0 0.0 0.057 13.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 CQR58504.1 - 0.057 12.9 0.1 0.13 11.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 CQR58504.1 - 0.061 13.6 0.4 0.16 12.2 0.4 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_30 PF13556.6 CQR58504.1 - 0.063 13.1 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Terminase_5 PF06056.12 CQR58504.1 - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 CQR58504.1 - 0.14 12.2 0.1 0.29 11.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix NYN_YacP PF05991.11 CQR58505.1 - 1.2e-50 171.8 0.0 1.3e-50 171.6 0.0 1.0 1 0 0 1 1 1 1 YacP-like NYN domain SpoU_methylase PF00588.19 CQR58506.1 - 1.3e-38 132.3 0.0 2.1e-38 131.7 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 CQR58506.1 - 3.1e-22 78.6 0.2 6.5e-21 74.4 0.3 2.3 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding Peripla_BP_4 PF13407.6 CQR58506.1 - 0.061 12.9 2.1 0.27 10.8 0.1 2.3 2 1 0 2 2 2 0 Periplasmic binding protein domain Ribonuclease_3 PF00636.26 CQR58507.1 - 3.4e-16 59.8 0.0 4.1e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease III domain tRNA-synt_1e PF01406.19 CQR58508.1 - 6.1e-123 410.0 0.0 9e-123 409.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 CQR58508.1 - 1e-14 54.1 0.1 1.1e-06 27.6 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 CQR58508.1 - 9.7e-11 42.0 5.3 1.3e-10 41.6 2.9 2.4 3 0 0 3 3 3 1 DALR domain tRNA-synt_1f PF01921.18 CQR58508.1 - 2.5e-09 36.5 0.0 0.00012 21.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 CQR58508.1 - 1e-07 30.7 0.1 0.0013 17.0 0.0 2.8 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DUF2203 PF09969.9 CQR58508.1 - 0.71 10.6 3.1 15 6.3 0.1 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) Hexapep PF00132.24 CQR58509.1 - 3.8e-15 54.9 13.0 1.5e-08 34.0 3.4 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 CQR58509.1 - 1.9e-05 24.3 15.1 0.00095 18.9 7.5 3.6 2 2 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 CQR58509.1 - 0.00034 21.0 0.0 0.00064 20.1 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal DUF3618 PF12277.8 CQR58509.1 - 0.056 13.7 1.6 6.8 7.0 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) tRNA-synt_1c PF00749.21 CQR58510.1 - 1.2e-124 415.3 0.0 1.4e-124 415.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.18 CQR58510.1 - 0.017 14.0 0.0 0.85 8.5 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) HycI PF01750.18 CQR58510.1 - 0.055 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase maturation protease YgbB PF02542.16 CQR58511.1 - 2.5e-65 219.5 0.0 2.9e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 YgbB family Nif11 PF07862.11 CQR58511.1 - 0.091 13.1 0.0 0.21 11.9 0.0 1.7 1 1 0 1 1 1 0 Nif11 domain IspD PF01128.19 CQR58512.1 - 2.8e-70 236.5 0.1 3.1e-70 236.4 0.1 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 CQR58512.1 - 2.1e-15 57.4 0.1 2.5e-15 57.2 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 CQR58512.1 - 0.008 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 CQR58512.1 - 0.021 14.4 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase PIN_9 PF18477.1 CQR58513.1 - 1.5e-05 25.2 0.1 2.9e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 PIN like domain TRAM PF01938.20 CQR58513.1 - 4.6e-05 23.3 0.8 0.00012 22.0 0.8 1.8 1 0 0 1 1 1 1 TRAM domain PIN PF01850.21 CQR58513.1 - 0.00054 20.5 0.2 0.00092 19.7 0.2 1.4 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.6 CQR58513.1 - 0.0022 18.3 0.4 0.0035 17.6 0.4 1.4 1 0 0 1 1 1 1 PIN domain Colicin_V PF02674.16 CQR58513.1 - 0.003 17.5 3.1 0.0045 17.0 3.1 1.3 1 0 0 1 1 1 1 Colicin V production protein PIN_5 PF08745.11 CQR58513.1 - 0.0094 15.4 0.4 0.059 12.8 0.1 2.1 2 1 1 3 3 3 1 PINc domain ribonuclease Transgly_assoc PF04226.13 CQR58513.1 - 0.44 10.8 4.8 0.12 12.6 1.1 1.9 2 0 0 2 2 2 0 Transglycosylase associated protein MORN PF02493.20 CQR58513.1 - 0.57 10.2 1.9 0.68 10.0 0.1 2.1 2 0 0 2 2 2 0 MORN repeat MazG PF03819.17 CQR58514.1 - 0.081 13.1 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain CDP-OH_P_transf PF01066.21 CQR58515.1 - 3.5e-13 50.1 0.5 3.5e-13 50.1 0.5 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Barstar PF01337.18 CQR58515.1 - 0.072 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Barstar (barnase inhibitor) DisA-linker PF10635.9 CQR58516.1 - 1.8e-54 183.4 6.0 3.3e-54 182.5 6.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller linker region DisA_N PF02457.16 CQR58516.1 - 2.7e-27 94.7 0.3 6.6e-27 93.4 0.0 1.7 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding HHH_2 PF12826.7 CQR58516.1 - 7.4e-08 32.4 0.4 2.4e-06 27.6 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.23 CQR58516.1 - 0.00015 21.5 0.0 0.00047 19.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 CQR58516.1 - 0.0014 19.2 0.0 0.0074 16.9 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.7 CQR58516.1 - 0.0018 18.5 0.0 0.025 14.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif ATPase PF06745.13 CQR58517.1 - 4.1e-17 62.3 1.2 7.7e-08 32.0 0.1 2.2 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.6 CQR58517.1 - 1.2e-16 60.9 0.0 2.8e-16 59.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rubredoxin_2 PF18073.1 CQR58517.1 - 4.4e-13 48.7 6.9 6.8e-13 48.1 6.9 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain ChlI PF13541.6 CQR58517.1 - 1.7e-09 37.6 0.0 4.5e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.6 CQR58517.1 - 4.6e-06 27.1 0.0 7.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 CQR58517.1 - 1.2e-05 24.8 0.0 2.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain Lon_C PF05362.13 CQR58517.1 - 8.8e-05 22.1 0.1 0.00025 20.7 0.0 1.7 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain AAA_22 PF13401.6 CQR58517.1 - 0.00017 21.9 0.1 0.0003 21.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 CQR58517.1 - 0.0011 18.3 0.4 0.003 16.8 0.4 1.8 1 1 0 1 1 1 1 Rad51 NTPase_1 PF03266.15 CQR58517.1 - 0.0013 18.7 0.1 0.0043 17.0 0.1 1.9 1 1 0 1 1 1 1 NTPase AAA_24 PF13479.6 CQR58517.1 - 0.0029 17.3 0.0 0.017 14.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 CQR58517.1 - 0.0072 16.1 0.1 0.016 14.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 CQR58517.1 - 0.011 15.7 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 CQR58517.1 - 0.011 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein KdpD PF02702.17 CQR58517.1 - 0.012 15.1 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_14 PF13173.6 CQR58517.1 - 0.014 15.5 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 CQR58517.1 - 0.015 14.5 0.0 0.021 14.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.29 CQR58517.1 - 0.021 15.2 0.0 0.069 13.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 CQR58517.1 - 0.031 14.2 0.0 0.073 13.0 0.0 1.7 1 0 0 1 1 1 0 NACHT domain MeaB PF03308.16 CQR58517.1 - 0.043 12.8 0.2 0.33 9.9 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2075 PF09848.9 CQR58517.1 - 0.068 12.4 0.0 0.099 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 CQR58517.1 - 0.085 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) CbiA PF01656.23 CQR58517.1 - 0.11 12.6 0.1 0.18 11.8 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 CQR58517.1 - 0.16 11.3 0.0 0.28 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.10 CQR58517.1 - 0.16 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HypA PF01155.19 CQR58517.1 - 0.19 11.8 0.8 0.46 10.5 0.8 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_29 PF13555.6 CQR58517.1 - 1.8 8.4 4.8 2.5 7.9 0.2 2.8 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_2 PF07724.14 CQR58518.1 - 7e-60 202.0 0.1 3.4e-57 193.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 CQR58518.1 - 4.5e-37 126.1 1.5 1.1e-36 124.9 1.5 1.7 1 0 0 1 1 1 1 AAA lid domain Clp_N PF02861.20 CQR58518.1 - 1.2e-35 121.4 9.2 1.1e-17 63.9 0.4 3.4 3 0 0 3 3 2 2 Clp amino terminal domain, pathogenicity island component ClpB_D2-small PF10431.9 CQR58518.1 - 2.7e-27 94.6 0.8 8e-27 93.1 0.2 2.2 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 CQR58518.1 - 4.8e-26 91.7 0.1 1.1e-13 51.7 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 CQR58518.1 - 2.3e-19 69.8 0.1 2.3e-13 50.3 0.0 3.2 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 CQR58518.1 - 1.4e-14 54.9 0.8 6.9e-05 23.3 0.1 4.1 2 2 1 3 3 3 2 AAA ATPase domain Sigma54_activat PF00158.26 CQR58518.1 - 2e-12 47.2 0.0 2.7e-07 30.4 0.0 2.6 2 1 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 CQR58518.1 - 3.1e-10 40.1 0.1 0.0029 17.3 0.0 3.4 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_22 PF13401.6 CQR58518.1 - 3.5e-09 37.0 3.6 0.016 15.5 0.0 5.6 4 2 1 5 5 3 2 AAA domain TniB PF05621.11 CQR58518.1 - 7.5e-08 32.0 0.0 0.00046 19.6 0.0 3.5 2 1 0 2 2 2 1 Bacterial TniB protein AAA_18 PF13238.6 CQR58518.1 - 1.2e-07 32.3 0.2 0.026 15.1 0.0 3.6 3 0 0 3 3 3 2 AAA domain RuvB_N PF05496.12 CQR58518.1 - 6.5e-07 29.2 1.9 0.24 11.1 0.0 4.5 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain UVR PF02151.19 CQR58518.1 - 1.2e-06 28.1 5.7 4e-06 26.4 5.7 2.0 1 0 0 1 1 1 1 UvrB/uvrC motif AAA_23 PF13476.6 CQR58518.1 - 1.4e-06 29.0 2.0 0.0085 16.6 0.0 3.7 4 1 0 4 4 3 1 AAA domain AAA_14 PF13173.6 CQR58518.1 - 1.4e-06 28.4 0.0 0.12 12.4 0.0 3.2 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 CQR58518.1 - 2.4e-06 27.6 0.6 0.57 10.0 0.1 3.9 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 CQR58518.1 - 4.7e-06 26.1 0.4 0.73 9.2 0.1 3.8 3 1 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 CQR58518.1 - 1e-05 25.1 0.0 0.037 13.6 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region DNA_pol3_delta2 PF13177.6 CQR58518.1 - 1.4e-05 24.9 0.0 0.0034 17.2 0.0 3.2 2 1 0 2 2 2 1 DNA polymerase III, delta subunit RNA_helicase PF00910.22 CQR58518.1 - 3.5e-05 24.1 0.0 0.67 10.4 0.0 3.1 3 0 0 3 3 2 2 RNA helicase Zeta_toxin PF06414.12 CQR58518.1 - 4.6e-05 22.8 0.1 0.04 13.2 0.0 3.3 3 0 0 3 3 3 1 Zeta toxin Roc PF08477.13 CQR58518.1 - 5.8e-05 23.3 0.0 0.45 10.7 0.0 2.5 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 CQR58518.1 - 9.6e-05 22.6 0.0 0.75 9.9 0.0 3.5 3 0 0 3 3 3 2 AAA domain ResIII PF04851.15 CQR58518.1 - 0.0001 22.4 0.0 0.94 9.5 0.0 4.3 4 1 1 5 5 4 1 Type III restriction enzyme, res subunit AAA_28 PF13521.6 CQR58518.1 - 0.00016 21.9 0.0 0.39 11.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR58518.1 - 0.00018 21.4 0.0 0.49 10.3 0.0 2.7 2 0 0 2 2 2 2 RsgA GTPase AAA_3 PF07726.11 CQR58518.1 - 0.00027 20.8 0.0 0.13 12.1 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 CQR58518.1 - 0.00031 20.8 0.0 0.94 9.5 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 CQR58518.1 - 0.00031 20.7 0.0 0.31 10.9 0.0 2.6 2 0 0 2 2 2 1 NACHT domain KTI12 PF08433.10 CQR58518.1 - 0.0015 18.1 0.0 3.5 7.0 0.0 3.4 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Torsin PF06309.11 CQR58518.1 - 0.0018 18.4 0.0 0.2 11.8 0.0 2.6 2 0 0 2 2 2 1 Torsin AAA_24 PF13479.6 CQR58518.1 - 0.0039 16.9 0.0 3.4 7.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.17 CQR58518.1 - 0.0072 15.4 0.0 3.4 6.7 0.0 3.3 3 0 0 3 3 3 1 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 CQR58518.1 - 0.0087 16.6 0.0 1.9 9.0 0.0 2.9 2 0 0 2 2 2 1 ABC transporter AAA_25 PF13481.6 CQR58518.1 - 0.0097 15.5 0.0 5.5 6.5 0.0 2.9 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 CQR58518.1 - 0.0099 15.3 0.0 5 6.5 0.0 2.7 2 0 0 2 2 2 0 PhoH-like protein AAA_30 PF13604.6 CQR58518.1 - 0.019 14.7 0.1 11 5.7 0.0 3.1 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 CQR58518.1 - 0.035 13.3 0.3 0.8 8.8 0.0 2.7 3 0 0 3 3 2 0 NB-ARC domain CbiA PF01656.23 CQR58518.1 - 0.038 14.0 0.2 3.6 7.7 0.0 3.3 3 2 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 CQR58518.1 - 0.049 13.7 0.1 28 4.8 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase Ras PF00071.22 CQR58518.1 - 0.052 13.2 0.0 6.4 6.4 0.0 2.8 3 0 0 3 3 3 0 Ras family T2SSE PF00437.20 CQR58518.1 - 0.061 12.4 0.2 0.21 10.6 0.1 2.0 2 1 0 2 2 2 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 CQR58518.1 - 0.066 13.3 0.0 1.4 9.1 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain PduV-EutP PF10662.9 CQR58518.1 - 0.071 12.9 0.0 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation TIP49 PF06068.13 CQR58518.1 - 0.084 12.1 8.3 1 8.5 0.1 4.1 4 1 1 5 5 4 0 TIP49 P-loop domain AAA_19 PF13245.6 CQR58518.1 - 0.11 12.9 1.2 8 6.8 0.0 3.9 3 1 0 3 3 3 0 AAA domain cobW PF02492.19 CQR58518.1 - 0.11 12.1 0.0 6.1 6.4 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 CQR58518.1 - 0.11 12.2 0.0 9.5 6.1 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain MazE_antitoxin PF04014.18 CQR58518.1 - 0.13 12.2 0.7 0.43 10.6 0.2 2.2 2 0 0 2 2 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF87 PF01935.17 CQR58518.1 - 0.15 12.1 1.6 9.4 6.3 0.0 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain ATP-gua_Ptrans PF00217.19 CQR58519.1 - 6e-77 257.9 0.1 8e-77 257.5 0.1 1.2 1 0 0 1 1 1 1 ATP:guanido phosphotransferase, C-terminal catalytic domain UVR PF02151.19 CQR58520.1 - 2e-09 36.9 9.9 3.5e-09 36.1 9.9 1.4 1 0 0 1 1 1 1 UvrB/uvrC motif Vps36-NZF-N PF16988.5 CQR58520.1 - 0.007 15.7 1.5 0.28 10.6 0.1 2.6 2 1 0 2 2 2 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-C2H2_3 PF13878.6 CQR58520.1 - 0.03 14.1 0.7 0.03 14.1 0.7 2.9 3 1 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Nudix_N_2 PF14803.6 CQR58520.1 - 0.58 10.1 7.0 0.75 9.8 0.5 3.1 3 0 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 CQR58520.1 - 1.4 9.0 8.2 0.94 9.5 1.7 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain CtsR PF05848.11 CQR58521.1 - 9.7e-38 128.0 0.3 1.5e-37 127.4 0.3 1.3 1 0 0 1 1 1 1 CtsR N-terminal HTH domain CtsR_C PF17727.1 CQR58521.1 - 1.4e-23 82.8 0.3 2.5e-23 82.0 0.3 1.4 1 0 0 1 1 1 1 CtsR C-terminal dimerization domain Acetyltransf_9 PF13527.7 CQR58522.1 - 1.9e-36 125.0 0.0 3e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_17 PF17668.1 CQR58522.1 - 3.1e-25 89.2 0.1 3e-24 86.1 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 CQR58522.1 - 2.1e-17 63.4 0.0 4.3e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_1 PF00583.25 CQR58522.1 - 0.00028 21.1 0.1 0.0054 17.0 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR58522.1 - 0.0012 19.2 0.0 0.005 17.2 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR58522.1 - 0.077 12.9 0.0 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain MFS_1 PF07690.16 CQR58523.1 - 1.4e-33 116.3 49.9 5.3e-18 65.1 21.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 CQR58523.1 - 9.5e-07 27.7 34.5 1.7e-05 23.6 30.8 3.2 1 1 1 2 2 2 1 MFS/sugar transport protein Sugar_tr PF00083.24 CQR58523.1 - 1.2e-06 27.7 7.7 1.2e-06 27.7 7.7 3.4 1 1 3 4 4 4 2 Sugar (and other) transporter OATP PF03137.20 CQR58523.1 - 0.0012 17.3 12.5 0.016 13.5 1.1 2.4 2 0 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family DUF2427 PF10348.9 CQR58523.1 - 1.5 8.6 10.6 0.13 12.0 3.5 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF2427) Oxidored_molyb PF00174.19 CQR58524.1 - 4.7e-35 120.7 0.2 7.8e-35 120.0 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Ni_hydr_CYTB PF01292.20 CQR58524.1 - 2.5e-05 24.0 19.6 4.2e-05 23.2 17.3 2.2 2 1 0 2 2 2 1 Prokaryotic cytochrome b561 TAT_signal PF10518.9 CQR58524.1 - 0.0028 17.4 0.1 0.0074 16.1 0.1 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4173 PF13777.6 CQR58524.1 - 0.042 13.3 0.4 0.16 11.4 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4173) Transgly PF00912.22 CQR58525.1 - 2e-54 183.8 0.0 4e-54 182.8 0.0 1.5 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 CQR58525.1 - 4e-38 131.3 0.7 1.2e-37 129.8 0.7 1.7 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain HAMP PF00672.25 CQR58526.1 - 0.0042 17.4 0.1 0.01 16.2 0.1 1.7 1 0 0 1 1 1 1 HAMP domain DUF3731 PF12531.8 CQR58526.1 - 0.039 13.8 0.5 0.051 13.4 0.5 1.2 1 0 0 1 1 1 0 DNA-K related protein HATPase_c PF02518.26 CQR58527.1 - 6.1e-16 58.9 0.0 1e-15 58.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58527.1 - 1.3e-14 54.0 0.2 1.9e-13 50.2 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR58527.1 - 1.5e-08 34.9 0.1 3.3e-08 33.8 0.1 1.6 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 CQR58527.1 - 0.00066 19.6 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.24 CQR58528.1 - 5e-30 103.9 0.6 7.2e-30 103.4 0.6 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58528.1 - 3.7e-26 91.0 0.0 8.2e-26 89.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 CQR58528.1 - 0.0016 18.0 0.2 1.6 8.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family DNA_ligase_aden PF01653.18 CQR58529.1 - 3.5e-93 312.2 0.0 5.5e-93 311.5 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 CQR58529.1 - 4.3e-24 84.2 0.7 8.5e-24 83.3 0.7 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 CQR58529.1 - 4.9e-20 71.4 0.0 8e-18 64.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 CQR58529.1 - 1.9e-12 47.6 0.0 6.5e-05 23.5 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 CQR58529.1 - 2.8e-12 46.8 0.0 6.9e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 CQR58529.1 - 1.2e-06 28.0 0.2 1.2e-05 24.9 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif PTCB-BRCT PF12738.7 CQR58529.1 - 1.5e-05 24.9 0.0 2.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 twin BRCT domain DNA_ligase_ZBD PF03119.16 CQR58529.1 - 0.011 15.7 0.3 0.026 14.6 0.3 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF669 PF05037.13 CQR58529.1 - 0.019 15.1 0.0 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF669) HHH_3 PF12836.7 CQR58529.1 - 0.036 14.3 0.1 2.1 8.6 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif UvrD-helicase PF00580.21 CQR58530.1 - 2.5e-82 276.9 0.3 4.7e-82 276.0 0.0 1.6 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 CQR58530.1 - 2.7e-73 247.3 0.7 1.4e-72 245.0 0.7 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 CQR58530.1 - 1.7e-36 125.7 0.2 2.5e-35 122.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 CQR58530.1 - 1.7e-11 43.8 0.0 4e-11 42.6 0.0 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 CQR58530.1 - 3.4e-07 30.2 0.0 0.00053 19.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 CQR58530.1 - 4.6e-07 29.8 0.1 0.12 12.1 0.0 3.6 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Exonuc_V_gamma PF04257.14 CQR58530.1 - 1.1e-05 23.9 0.3 1.1e-05 23.9 0.3 1.5 2 0 0 2 2 2 1 Exodeoxyribonuclease V, gamma subunit Terminase_6 PF03237.15 CQR58530.1 - 0.0043 16.8 0.0 0.013 15.2 0.0 1.8 1 0 0 1 1 1 1 Terminase-like family BPL_LplA_LipB_2 PF16917.5 CQR58530.1 - 0.18 11.3 0.1 0.34 10.4 0.1 1.4 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family PcrB PF01884.17 CQR58531.1 - 5.5e-69 232.1 0.0 6.8e-69 231.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family GDPD PF03009.17 CQR58532.1 - 2.9e-17 63.3 0.1 2.7e-14 53.5 0.1 2.3 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Redoxin PF08534.10 CQR58532.1 - 0.027 14.2 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Redoxin Glyco_hydro_97 PF10566.9 CQR58532.1 - 0.1 11.9 0.0 0.22 10.8 0.0 1.5 1 0 0 1 1 1 0 Glycoside hydrolase 97 Bac_transf PF02397.16 CQR58533.1 - 1.9e-67 226.4 0.1 1.9e-67 226.4 0.1 1.6 2 0 0 2 2 2 1 Bacterial sugar transferase CoA_binding_3 PF13727.6 CQR58533.1 - 3.1e-24 85.9 0.0 5.2e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 CoA-binding domain PglD_N PF17836.1 CQR58533.1 - 0.019 15.6 0.0 0.035 14.7 0.0 1.4 1 0 0 1 1 1 0 PglD N-terminal domain SBF PF01758.16 CQR58533.1 - 0.15 11.7 4.3 0.045 13.4 0.9 1.8 2 0 0 2 2 2 0 Sodium Bile acid symporter family Glycos_transf_2 PF00535.26 CQR58534.1 - 1.6e-21 76.8 0.0 5.7e-21 75.1 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR58534.1 - 1.7e-17 64.1 0.0 2.7e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 CQR58534.1 - 3.2e-12 46.8 0.1 5.3e-11 42.8 0.1 2.2 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 CQR58534.1 - 7e-08 32.3 0.2 9.7e-05 22.0 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 CQR58534.1 - 7e-07 28.9 0.0 0.0036 16.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 CQR58534.1 - 1.6e-05 24.4 0.1 4.7e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_5 PF13712.6 CQR58534.1 - 0.0013 18.4 0.0 0.015 15.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 CQR58534.1 - 0.095 13.2 0.0 0.19 12.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 CQR58535.1 - 2.4e-18 66.5 1.1 1.7e-17 63.8 0.3 2.7 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR58535.1 - 7.9e-13 48.8 1.8 6.2e-12 45.9 1.8 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 CQR58535.1 - 3.5e-05 23.8 0.2 7e-05 22.8 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 CQR58535.1 - 0.0059 16.3 0.0 0.046 13.4 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family RmlD_sub_bind PF04321.17 CQR58536.1 - 1.4e-103 345.9 0.0 1.6e-103 345.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 CQR58536.1 - 3.9e-30 105.1 0.1 6e-30 104.5 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 CQR58536.1 - 3.9e-18 66.0 1.4 7.3e-14 51.9 0.1 2.3 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 CQR58536.1 - 1.6e-13 50.5 1.9 1.1e-11 44.4 0.5 2.9 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 CQR58536.1 - 1.8e-09 37.0 1.0 1.8e-08 33.7 0.1 2.2 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 CQR58536.1 - 4.8e-09 35.8 0.4 1.8e-08 33.9 0.1 2.0 2 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 CQR58536.1 - 1e-05 25.5 0.1 3.1e-05 23.9 0.1 1.7 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 CQR58536.1 - 0.0053 16.2 0.6 0.034 13.6 0.1 2.2 1 1 1 2 2 2 1 short chain dehydrogenase DapB_N PF01113.20 CQR58536.1 - 0.063 13.4 0.2 0.13 12.3 0.2 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Ldh_1_N PF00056.23 CQR58536.1 - 0.1 12.7 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 CQR58537.1 - 3.2e-96 322.6 0.0 3.7e-96 322.4 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 CQR58537.1 - 8.5e-68 228.4 0.0 1.1e-67 228.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 CQR58537.1 - 1.7e-20 73.2 0.1 2.1e-20 72.9 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 CQR58537.1 - 1.4e-19 70.3 0.0 1.7e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 CQR58537.1 - 2.5e-17 62.9 0.0 3.8e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 CQR58537.1 - 8.7e-15 54.6 0.1 9.7e-11 41.3 0.0 2.8 2 1 0 3 3 3 2 Male sterility protein NAD_binding_10 PF13460.6 CQR58537.1 - 1.1e-08 35.3 0.0 1.6e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 CQR58537.1 - 0.00019 21.0 0.1 0.0012 18.3 0.1 2.1 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 CQR58537.1 - 0.00052 20.3 0.1 0.00098 19.4 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 CQR58537.1 - 0.0017 18.0 0.2 0.0028 17.3 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family Semialdhyde_dh PF01118.24 CQR58537.1 - 0.0034 17.8 0.0 0.0065 16.9 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.10 CQR58537.1 - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 2 0 0 2 2 2 0 KR domain Glycos_transf_2 PF00535.26 CQR58539.1 - 5.5e-18 65.3 0.1 1.4e-17 64.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR58539.1 - 6.8e-05 22.9 0.0 9.7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR58539.1 - 0.00092 18.8 3.5 0.0024 17.4 1.5 2.3 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR58539.1 - 0.0084 16.6 0.2 0.033 14.7 0.2 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 CQR58540.1 - 4.6e-22 78.5 18.5 5.4e-22 78.2 18.5 1.0 1 0 0 1 1 1 1 GtrA-like protein H_PPase PF03030.16 CQR58540.1 - 0.012 14.3 8.9 0.014 14.1 8.9 1.0 1 0 0 1 1 1 0 Inorganic H+ pyrophosphatase DUF2304 PF10066.9 CQR58541.1 - 2.7e-28 98.3 12.1 2.9e-28 98.2 12.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Bax1-I PF01027.20 CQR58541.1 - 0.0003 20.7 4.6 0.00033 20.5 4.6 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF948 PF06103.11 CQR58541.1 - 0.038 14.2 0.7 0.038 14.2 0.7 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) O-antigen_lig PF13425.6 CQR58541.1 - 0.07 11.9 10.0 0.085 11.6 10.0 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Ctr PF04145.15 CQR58541.1 - 0.17 12.5 4.2 0.35 11.5 0.1 2.3 1 1 2 3 3 3 0 Ctr copper transporter family DUF4131 PF13567.6 CQR58541.1 - 0.24 11.0 4.7 1.2 8.7 4.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF5504 PF17608.2 CQR58541.1 - 0.3 11.2 11.7 0.85 9.7 11.6 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5504) DUF2207 PF09972.9 CQR58541.1 - 1.2 7.8 5.5 2 7.1 5.5 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2070 PF09843.9 CQR58541.1 - 1.6 6.9 9.0 1.8 6.7 9.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TctA PF01970.16 CQR58541.1 - 1.6 7.3 10.6 2.2 6.9 10.6 1.2 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family Glycos_transf_2 PF00535.26 CQR58542.1 - 1.1e-18 67.6 0.0 1.5e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR58542.1 - 2.1e-06 27.8 0.0 2.4e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 CQR58542.1 - 0.0084 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 PMT_2 PF13231.6 CQR58543.1 - 8.9e-12 45.5 23.3 8.9e-12 45.5 23.3 2.4 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_4 PF13439.6 CQR58544.1 - 0.033 14.2 0.0 0.046 13.7 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase Family 4 HAS-barrel PF09378.10 CQR58544.1 - 0.041 14.0 0.8 0.78 9.9 0.1 2.8 2 1 0 2 2 2 0 HAS barrel domain Glycos_transf_1 PF00534.20 CQR58545.1 - 5.9e-18 65.0 0.2 1.2e-17 64.0 0.2 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 CQR58545.1 - 6.1e-10 39.7 0.0 1e-09 38.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 CbiK PF06180.11 CQR58545.1 - 0.016 14.5 0.1 0.03 13.6 0.1 1.5 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Glyco_trans_1_2 PF13524.6 CQR58545.1 - 0.068 13.6 0.0 0.33 11.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 Turandot PF07240.11 CQR58545.1 - 0.12 12.4 1.0 20 5.2 0.0 2.6 2 0 0 2 2 2 0 Stress-inducible humoral factor Turandot Methyltransf_31 PF13847.6 CQR58546.1 - 1.5e-16 60.6 0.0 3.8e-16 59.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR58546.1 - 6.3e-13 49.3 0.1 3.5e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR58546.1 - 1.2e-11 45.0 0.0 3.5e-11 43.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58546.1 - 4.6e-10 40.1 1.0 1.3e-09 38.7 0.0 2.3 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR58546.1 - 1.1e-09 38.3 0.1 3.9e-08 33.3 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 CQR58546.1 - 1.7e-05 24.5 0.0 8.4e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Glyco_trans_1_4 PF13692.6 CQR58546.1 - 0.00038 20.9 0.0 0.00076 19.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_4 PF02390.17 CQR58546.1 - 0.014 14.8 0.0 0.036 13.6 0.0 1.7 1 0 0 1 1 1 0 Putative methyltransferase SKA2 PF16740.5 CQR58546.1 - 0.032 14.0 5.2 7.5 6.4 0.0 3.5 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 2 TolA_bind_tri PF16331.5 CQR58546.1 - 0.25 11.4 3.1 0.13 12.3 0.5 1.9 2 0 0 2 2 2 0 TolA binding protein trimerisation HALZ PF02183.18 CQR58546.1 - 0.6 10.4 6.4 0.62 10.3 1.1 3.2 3 0 0 3 3 3 0 Homeobox associated leucine zipper UPF0184 PF03670.13 CQR58546.1 - 1 9.8 3.5 2.4 8.6 3.5 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) ABC_tran PF00005.27 CQR58547.1 - 1.2e-21 77.6 0.4 2.7e-21 76.5 0.4 1.6 1 1 0 1 1 1 1 ABC transporter Wzt_C PF14524.6 CQR58547.1 - 3.8e-21 75.6 1.3 6.5e-21 74.9 1.3 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_21 PF13304.6 CQR58547.1 - 1.5e-05 24.9 2.5 3.1e-05 23.9 0.6 2.4 2 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR58547.1 - 0.00032 20.4 0.2 0.00089 19.0 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR58547.1 - 0.00059 19.7 0.4 0.00059 19.7 0.4 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 CQR58547.1 - 0.0069 16.1 0.2 0.067 12.9 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 CQR58547.1 - 0.011 16.1 0.0 0.028 14.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 CQR58547.1 - 0.021 14.2 0.4 0.038 13.4 0.4 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CQR58547.1 - 0.045 13.7 0.2 0.11 12.4 0.2 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 CQR58547.1 - 0.055 14.0 3.7 0.053 14.0 1.6 2.0 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 CQR58547.1 - 0.055 13.4 0.5 8.9 6.2 0.0 2.3 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.23 CQR58547.1 - 0.06 13.4 0.4 0.22 11.6 0.4 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.15 CQR58547.1 - 0.09 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AhpC-TSA_2 PF13911.6 CQR58547.1 - 0.092 12.9 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme AAA_22 PF13401.6 CQR58547.1 - 0.099 12.9 0.3 1.2 9.4 0.3 2.2 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 CQR58548.1 - 1.9e-29 102.6 22.7 1.9e-29 102.6 22.7 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 CQR58548.1 - 0.0079 15.4 37.4 0.0049 16.0 29.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein Wzy_C PF04932.15 CQR58549.1 - 5.9e-18 65.0 20.7 2e-17 63.2 19.7 5.5 3 2 0 3 3 3 2 O-Antigen ligase NatB_MDM20 PF09797.9 CQR58549.1 - 0.007 15.3 0.2 0.011 14.7 0.2 1.3 1 0 0 1 1 1 1 N-acetyltransferase B complex (NatB) non catalytic subunit Wzy_C_2 PF11846.8 CQR58549.1 - 0.01 15.8 0.2 0.01 15.8 0.2 5.9 7 1 0 7 7 7 0 Virulence factor membrane-bound polymerase, C-terminal TPR_19 PF14559.6 CQR58549.1 - 0.011 16.3 9.8 1.2 9.7 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 CQR58549.1 - 0.031 14.6 1.7 0.085 13.3 0.2 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Flp_Fap PF04964.14 CQR58549.1 - 0.071 12.9 5.5 0.3 10.9 0.8 3.4 2 0 0 2 2 2 0 Flp/Fap pilin component ODV-E18 PF10717.9 CQR58549.1 - 0.13 12.1 0.1 1.5 8.7 0.0 2.8 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 NTP_transferase PF00483.23 CQR58550.1 - 9.8e-32 110.5 0.0 1.6e-31 109.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR58550.1 - 3e-09 37.4 0.0 5.1e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 CQR58550.1 - 0.00049 19.9 0.0 0.00076 19.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 CQR58550.1 - 0.0078 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 CQR58550.1 - 0.069 13.1 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Cytidylyltransferase Peptidase_U32 PF01136.19 CQR58551.1 - 1.6e-104 348.1 0.0 3.6e-83 278.3 0.0 2.3 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 CQR58551.1 - 2e-22 79.9 0.0 4.2e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 Collagenase Integrin_B_tail PF07965.12 CQR58551.1 - 0.7 10.4 3.8 1.9 9.0 1.2 2.2 2 0 0 2 2 2 0 Integrin beta tail domain NTP_transferase PF00483.23 CQR58552.1 - 5e-71 239.2 0.0 6.5e-71 238.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR58552.1 - 1.1e-09 38.9 0.0 1.3e-09 38.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 CQR58552.1 - 0.012 15.4 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dTDP_sugar_isom PF00908.17 CQR58553.1 - 2.4e-73 245.3 0.0 2.7e-73 245.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cu_amine_oxidN1 PF07833.11 CQR58554.1 - 2.9e-16 59.7 0.3 1.2e-07 32.1 0.0 3.1 2 1 1 3 3 3 2 Copper amine oxidase N-terminal domain DcrB PF08786.11 CQR58554.1 - 0.00034 20.7 0.4 0.0077 16.3 0.1 3.0 3 0 0 3 3 3 1 DcrB PsbP PF01789.16 CQR58554.1 - 0.0089 16.2 4.2 0.11 12.7 0.0 3.8 4 1 0 4 4 4 1 PsbP Trypsin_2 PF13365.6 CQR58555.1 - 4.9e-26 92.4 0.8 9.6e-26 91.5 0.4 1.7 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.26 CQR58555.1 - 1.1e-14 54.9 0.1 2e-14 53.9 0.1 1.5 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 CQR58555.1 - 1.4e-10 41.3 0.0 5.9e-10 39.3 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ_6 PF17820.1 CQR58555.1 - 1.6e-06 27.8 0.1 1.1e-05 25.1 0.0 2.3 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 CQR58555.1 - 7.9e-05 22.9 0.0 0.0073 16.6 0.0 2.6 2 0 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 CQR58555.1 - 0.0063 16.5 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 Tricorn protease PDZ domain DUF31 PF01732.16 CQR58555.1 - 0.033 13.7 1.8 0.54 9.7 0.2 2.1 1 1 0 2 2 2 0 Putative peptidase (DUF31) Peptidase_S46 PF10459.9 CQR58555.1 - 0.13 10.9 0.9 3.4 6.2 0.3 2.1 2 0 0 2 2 2 0 Peptidase S46 DUF2759 PF10958.8 CQR58556.1 - 0.00045 19.9 6.0 0.00068 19.3 6.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2759) PTPS_related PF10131.9 CQR58556.1 - 0.052 11.9 2.1 0.054 11.8 2.1 1.0 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein DUF3043 PF11241.8 CQR58556.1 - 0.83 9.7 2.7 0.89 9.6 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) NIR_SIR PF01077.22 CQR58557.1 - 6e-53 178.6 0.0 5.5e-37 126.7 0.0 2.9 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 CQR58557.1 - 1.4e-41 140.1 0.7 6.2e-20 70.8 0.1 2.9 3 0 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain DUF3977 PF13122.6 CQR58558.1 - 2.7e-22 78.8 0.2 2.9e-22 78.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3977) UvrA_inter PF17760.1 CQR58559.1 - 1.7e-41 140.7 1.9 3.7e-41 139.6 1.9 1.6 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 CQR58559.1 - 2.7e-37 127.5 0.0 5.9e-35 119.9 0.0 3.3 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 CQR58559.1 - 7.1e-22 78.4 0.3 1.4e-10 41.8 0.0 4.9 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.19 CQR58559.1 - 7.3e-12 45.2 0.0 0.00083 18.9 0.0 4.3 3 2 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 CQR58559.1 - 5.8e-08 33.3 0.1 0.018 15.4 0.0 2.8 3 0 0 3 3 2 2 AAA ATPase domain AAA_29 PF13555.6 CQR58559.1 - 3.2e-07 30.0 0.3 0.013 15.2 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR58559.1 - 3.1e-06 27.2 0.2 0.081 12.7 0.0 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR58559.1 - 4.7e-06 26.6 0.1 0.03 14.2 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 CQR58559.1 - 8.7e-05 22.8 0.0 0.59 10.4 0.0 3.2 3 0 0 3 3 3 2 AAA domain BCA_ABC_TP_C PF12399.8 CQR58559.1 - 0.00011 22.0 0.9 0.05 13.5 0.0 2.5 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.6 CQR58559.1 - 0.00012 21.7 0.0 0.24 10.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain DnaJ_CXXCXGXG PF00684.19 CQR58559.1 - 0.00016 22.0 2.1 0.12 12.8 0.3 3.5 3 0 0 3 3 3 1 DnaJ central domain APS_kinase PF01583.20 CQR58559.1 - 0.00074 19.4 0.1 1.1 9.1 0.0 3.0 3 0 0 3 3 3 2 Adenylylsulphate kinase ATPase PF06745.13 CQR58559.1 - 0.0018 17.7 0.0 0.65 9.3 0.0 2.4 2 0 0 2 2 2 1 KaiC AAA_18 PF13238.6 CQR58559.1 - 0.0029 18.1 0.0 3.5 8.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 CQR58559.1 - 0.0045 17.0 0.0 6.9 6.7 0.0 3.4 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 CQR58559.1 - 0.0051 17.0 0.0 6.9 6.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 CQR58559.1 - 0.0065 16.1 0.2 0.47 10.0 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 CQR58559.1 - 0.0081 16.7 2.4 1.7 9.1 0.0 3.1 3 1 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 CQR58559.1 - 0.0087 16.0 0.0 3.5 7.5 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 CQR58559.1 - 0.0088 16.0 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 1 NACHT domain MMR_HSR1 PF01926.23 CQR58559.1 - 0.015 15.4 0.1 0.93 9.6 0.0 2.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF2075 PF09848.9 CQR58559.1 - 0.022 14.0 0.0 1.4 8.1 0.1 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 CQR58559.1 - 0.049 13.3 0.0 8.4 6.1 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 CQR58559.1 - 0.064 13.0 0.0 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 CQR58559.1 - 0.091 12.5 0.0 3.8 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 CQR58559.1 - 0.1 12.3 0.0 1.8 8.2 0.0 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 CQR58559.1 - 0.1 11.7 0.0 3.9 6.6 0.0 2.6 2 0 0 2 2 2 0 NB-ARC domain Roc PF08477.13 CQR58559.1 - 0.14 12.4 0.0 5.2 7.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 CQR58559.1 - 0.14 11.9 0.0 25 4.5 0.0 2.8 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 CQR58559.1 - 0.15 10.7 0.0 15 4.2 0.0 2.4 2 0 0 2 2 2 0 RNA12 protein DUF815 PF05673.13 CQR58559.1 - 0.16 11.1 0.1 4.4 6.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 CQR58559.1 - 0.18 12.2 0.0 10 6.6 0.0 2.6 2 0 0 2 2 2 0 RNA helicase Zn-ribbon_8 PF09723.10 CQR58559.1 - 5.9 7.1 8.1 0.9 9.7 0.3 3.1 3 0 0 3 3 3 0 Zinc ribbon domain UvrB_inter PF17757.1 CQR58560.1 - 1.9e-35 120.9 0.0 2.1e-34 117.5 0.1 2.7 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 CQR58560.1 - 6.9e-22 77.0 4.0 1.3e-21 76.1 4.0 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 CQR58560.1 - 1.9e-18 66.9 2.1 1.5e-17 64.0 0.1 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR58560.1 - 2e-13 50.7 0.0 3e-12 46.9 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 CQR58560.1 - 1.6e-07 30.9 8.3 6.7e-07 28.9 8.3 2.2 1 0 0 1 1 1 1 UvrB/uvrC motif AAA_30 PF13604.6 CQR58560.1 - 1e-05 25.3 0.0 0.00086 19.1 0.0 2.8 2 1 0 2 2 2 1 AAA domain DEAD PF00270.29 CQR58560.1 - 0.00077 19.3 0.1 0.024 14.4 0.0 3.0 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.6 CQR58560.1 - 0.00093 19.6 0.0 0.41 11.0 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 CQR58560.1 - 0.0013 19.1 1.6 0.17 12.2 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_7 PF12775.7 CQR58560.1 - 0.0014 18.2 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region UvrD-helicase PF00580.21 CQR58560.1 - 0.004 16.7 4.9 0.52 9.8 1.4 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_5 PF07728.14 CQR58560.1 - 0.016 15.2 0.0 0.051 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 CQR58560.1 - 0.021 13.7 0.0 0.045 12.6 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.27 CQR58560.1 - 0.029 14.9 0.5 4.1 7.9 0.0 3.0 3 0 0 3 3 3 0 ABC transporter DUF87 PF01935.17 CQR58560.1 - 0.031 14.4 2.5 0.047 13.8 0.3 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain AAA PF00004.29 CQR58560.1 - 0.078 13.4 0.1 0.88 10.0 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 CQR58560.1 - 0.082 12.5 0.0 0.28 10.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR58560.1 - 0.12 12.8 0.0 0.42 11.0 0.0 2.0 1 0 0 1 1 1 0 AAA ATPase domain AAA_11 PF13086.6 CQR58560.1 - 1.5 8.5 10.2 0.65 9.7 0.2 3.5 3 1 0 4 4 4 0 AAA domain FtsK_SpoIIIE PF01580.18 CQR58560.1 - 1.8 7.9 5.0 3.7 6.8 0.1 2.6 3 0 0 3 3 3 0 FtsK/SpoIIIE family MotA_ExbB PF01618.16 CQR58561.1 - 2.9e-29 101.4 0.2 9.1e-29 99.8 0.1 1.9 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family tify PF06200.14 CQR58561.1 - 0.082 12.3 0.2 2.3 7.6 0.1 2.4 2 0 0 2 2 2 0 tify domain ThrE_2 PF12821.7 CQR58561.1 - 0.39 10.9 8.2 0.45 10.7 0.8 2.2 2 0 0 2 2 2 0 Threonine/Serine exporter, ThrE MotB_plug PF13677.6 CQR58562.1 - 8.5e-20 70.1 0.0 1.5e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 CQR58562.1 - 4.9e-17 62.1 0.0 8.3e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 OmpA family GCV_H PF01597.19 CQR58563.1 - 7.6e-41 138.8 0.0 8.3e-41 138.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 CQR58563.1 - 4.9e-05 23.1 0.2 9.2e-05 22.2 0.2 1.4 1 1 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 CQR58563.1 - 0.0033 17.3 0.1 0.0046 16.9 0.1 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain THF_DHG_CYH_C PF02882.19 CQR58563.1 - 0.21 10.9 0.4 8.5 5.7 0.1 2.0 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GCV_T PF01571.21 CQR58564.1 - 1.1e-91 306.7 0.0 1.4e-91 306.4 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 CQR58564.1 - 2e-25 88.5 0.1 4.2e-25 87.5 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 CQR58564.1 - 3e-05 24.2 0.0 0.00062 19.9 0.0 2.4 1 1 1 2 2 2 2 Sarcosine oxidase, gamma subunit family GDC-P PF02347.16 CQR58565.1 - 6.3e-145 483.3 0.0 7.1e-145 483.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 CQR58565.1 - 1e-08 34.2 0.1 3e-08 32.6 0.1 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 CQR58565.1 - 0.0016 17.5 0.0 0.0024 16.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 CQR58566.1 - 4.5e-13 48.8 0.0 1.9e-12 46.8 0.0 1.8 1 1 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 CQR58566.1 - 1.5e-06 27.4 0.0 2.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 CQR58566.1 - 0.031 13.6 0.1 0.044 13.1 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 CQR58566.1 - 0.079 12.2 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase GerE PF00196.19 CQR58567.1 - 2e-10 40.1 0.0 2.3e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 CQR58567.1 - 0.046 13.3 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF5490 PF17593.2 CQR58567.1 - 0.15 12.1 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5490) ACR_tran PF00873.19 CQR58568.1 - 4.6e-180 600.7 42.4 5.6e-180 600.4 42.4 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 CQR58568.1 - 1.3e-08 34.4 38.7 5.9e-05 22.5 12.4 2.5 2 0 0 2 2 2 2 Protein export membrane protein IcmF_C PF06744.12 CQR58568.1 - 0.085 12.5 0.1 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 Type VI secretion protein IcmF C-terminal rhaM PF05336.13 CQR58569.1 - 3e-23 82.0 0.6 3.3e-23 81.8 0.6 1.0 1 0 0 1 1 1 1 L-rhamnose mutarotase zf-CHC2 PF01807.20 CQR58569.1 - 0.017 14.9 0.8 0.025 14.4 0.8 1.3 1 0 0 1 1 1 0 CHC2 zinc finger ABC2_membrane_3 PF12698.7 CQR58570.1 - 3.8e-32 111.7 0.5 4.7e-32 111.4 0.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR58570.1 - 3.9e-24 85.2 5.3 3.9e-24 85.2 5.3 1.9 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR58570.1 - 1.1e-10 41.2 6.4 1.9e-10 40.6 6.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2231 PF09990.9 CQR58570.1 - 0.066 13.7 7.3 0.58 10.6 1.6 2.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2231) ABC2_membrane_3 PF12698.7 CQR58571.1 - 1e-41 143.2 10.8 1.2e-41 143.0 10.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 CQR58571.1 - 3.1e-16 59.4 28.9 1.2e-14 54.3 18.3 2.9 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 CQR58571.1 - 3.3e-12 46.3 9.9 4.8e-12 45.7 9.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 CQR58571.1 - 7.5e-08 32.5 10.0 7.5e-08 32.5 10.0 2.8 2 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 CQR58571.1 - 2.3 7.7 26.4 0.35 10.4 20.3 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein DUF2512 PF10710.9 CQR58571.1 - 9.6 5.9 9.0 30 4.3 9.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) ABC_tran PF00005.27 CQR58572.1 - 8.6e-33 113.8 0.0 1.5e-32 113.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58572.1 - 8.1e-11 42.3 0.2 1.1e-06 28.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR58572.1 - 0.0015 19.0 0.1 0.003 18.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 CQR58572.1 - 0.0035 18.0 0.1 0.0076 17.0 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 CQR58572.1 - 0.0073 16.0 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR58572.1 - 0.031 13.7 0.0 3 7.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 CQR58572.1 - 0.041 13.6 0.0 6.5 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 CQR58572.1 - 0.054 13.2 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 CQR58572.1 - 0.06 13.0 0.0 4.8 6.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 CQR58572.1 - 0.084 12.8 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 CQR58572.1 - 0.11 12.5 0.2 0.54 10.2 0.0 2.1 2 1 0 2 2 2 0 NTPase AAA_27 PF13514.6 CQR58572.1 - 0.11 12.1 0.1 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 CQR58572.1 - 0.14 11.1 0.3 0.87 8.4 0.0 2.0 2 0 0 2 2 2 0 PrkA AAA domain AAA_24 PF13479.6 CQR58572.1 - 0.26 11.0 0.7 7.7 6.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain HisKA_3 PF07730.13 CQR58573.1 - 2.3e-13 50.4 4.4 5.9e-13 49.1 4.4 1.7 1 0 0 1 1 1 1 Histidine kinase TSKS PF15358.6 CQR58573.1 - 0.0067 14.9 0.7 0.0096 14.3 0.7 1.2 1 0 0 1 1 1 1 Testis-specific serine kinase substrate HATPase_c PF02518.26 CQR58573.1 - 0.007 16.9 0.1 0.033 14.7 0.1 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58573.1 - 0.063 13.2 0.7 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF2203 PF09969.9 CQR58573.1 - 3.2 8.5 6.2 11 6.8 1.3 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Response_reg PF00072.24 CQR58574.1 - 3.4e-26 91.6 0.0 5.5e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR58574.1 - 1.5e-16 59.6 0.0 2.6e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR58574.1 - 1.1e-05 25.1 0.4 2.8e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR58574.1 - 0.00064 19.4 0.0 0.0019 17.9 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 CQR58574.1 - 0.0026 17.2 0.0 0.005 16.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 CQR58574.1 - 0.0034 16.9 0.0 0.0075 15.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 CQR58574.1 - 0.0045 17.4 0.1 0.012 16.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 CQR58574.1 - 0.0089 16.0 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 CQR58574.1 - 0.011 15.9 0.0 0.024 14.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 CQR58574.1 - 0.059 13.2 0.1 1.1 9.1 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR58574.1 - 0.079 12.4 0.0 0.22 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 CQR58574.1 - 0.16 12.0 0.1 0.4 10.7 0.1 1.7 1 0 0 1 1 1 0 HTH domain Terminase_5 PF06056.12 CQR58574.1 - 0.2 11.6 0.1 1.2 9.1 0.0 2.1 1 1 1 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) PDZ_6 PF17820.1 CQR58575.1 - 5.7e-09 35.7 0.0 9.6e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 CQR58575.1 - 0.00023 21.4 0.0 0.00041 20.6 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 CQR58575.1 - 0.1 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 PDZ domain Peptidase_S41 PF03572.18 CQR58576.1 - 2.4e-48 163.9 0.2 4e-48 163.1 0.2 1.4 1 0 0 1 1 1 1 Peptidase family S41 PG_binding_1 PF01471.18 CQR58576.1 - 3.9e-18 65.4 0.2 1.2e-17 63.8 0.2 1.9 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PDZ_6 PF17820.1 CQR58576.1 - 9.9e-16 57.3 0.1 2.3e-15 56.2 0.1 1.7 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 CQR58576.1 - 2.1e-14 53.6 0.6 5.7e-14 52.2 0.6 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 CQR58576.1 - 5.9e-13 49.0 0.1 1.9e-12 47.4 0.1 1.9 1 0 0 1 1 1 1 PDZ domain PG_binding_2 PF08823.11 CQR58576.1 - 0.0029 17.9 0.0 0.015 15.6 0.0 2.3 1 0 0 1 1 1 1 Putative peptidoglycan binding domain DUF3394 PF11874.8 CQR58576.1 - 0.012 15.4 0.2 0.075 12.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3394) Peptidase_M23 PF01551.22 CQR58577.1 - 6.8e-33 112.8 1.1 1.7e-32 111.5 1.1 1.7 1 0 0 1 1 1 1 Peptidase family M23 RnfC_N PF13375.6 CQR58577.1 - 0.0065 16.4 0.2 0.27 11.2 0.0 2.8 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Baculo_PEP_C PF04513.12 CQR58577.1 - 0.015 15.4 2.9 0.015 15.4 2.9 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus T4_deiodinase PF00837.17 CQR58577.1 - 0.02 14.2 0.0 3.8 6.7 0.1 2.4 2 0 0 2 2 2 0 Iodothyronine deiodinase Glyco_transf_36 PF06165.11 CQR58577.1 - 0.19 11.1 0.9 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase family 36 Rrn6 PF10214.9 CQR58577.1 - 0.32 9.4 13.6 0.47 8.9 13.6 1.2 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor Pox_P35 PF03213.14 CQR58577.1 - 0.34 10.1 1.6 0.43 9.8 0.1 2.0 1 1 1 2 2 2 0 Poxvirus P35 protein Spc7 PF08317.11 CQR58577.1 - 0.53 9.1 38.3 0.1 11.4 9.2 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Presenilin PF01080.17 CQR58577.1 - 3.2 6.4 6.9 0.3 9.8 0.7 1.9 2 0 0 2 2 2 0 Presenilin HAUS-augmin3 PF14932.6 CQR58577.1 - 3.4 7.2 30.1 0.076 12.6 4.5 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 FtsX_ECD PF18075.1 CQR58578.1 - 1.1e-21 77.3 0.4 1.6e-21 76.8 0.4 1.2 1 0 0 1 1 1 1 FtsX extracellular domain FtsX PF02687.21 CQR58578.1 - 1.5e-07 31.8 5.3 1.5e-07 31.8 5.3 3.0 3 0 0 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 CQR58579.1 - 8.1e-35 120.3 0.0 1.1e-34 119.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58579.1 - 6.2e-08 32.8 0.0 0.00083 19.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58579.1 - 8.9e-05 22.0 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 CQR58579.1 - 0.00025 21.2 0.2 0.028 14.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 CQR58579.1 - 0.00029 20.5 0.0 0.0007 19.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CQR58579.1 - 0.00095 19.5 0.0 0.0037 17.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR58579.1 - 0.0015 18.9 0.0 0.0019 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR58579.1 - 0.0025 17.7 0.1 0.0067 16.4 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase RNA_helicase PF00910.22 CQR58579.1 - 0.0059 17.0 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 RNA helicase NTPase_1 PF03266.15 CQR58579.1 - 0.008 16.1 0.4 0.38 10.6 0.1 2.2 2 0 0 2 2 2 1 NTPase DUF87 PF01935.17 CQR58579.1 - 0.016 15.3 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain IstB_IS21 PF01695.17 CQR58579.1 - 0.02 14.7 0.0 0.55 9.9 0.0 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 CQR58579.1 - 0.02 14.6 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR58579.1 - 0.047 14.2 0.0 0.11 13.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 CQR58579.1 - 0.056 12.6 0.1 0.16 11.1 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Dynamin_N PF00350.23 CQR58579.1 - 0.078 13.0 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Dynamin family MMR_HSR1 PF01926.23 CQR58579.1 - 0.079 13.1 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma54_activat PF00158.26 CQR58579.1 - 0.081 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.29 CQR58579.1 - 0.081 13.3 0.4 0.37 11.2 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 CQR58579.1 - 0.11 12.2 0.0 0.25 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 CQR58579.1 - 0.12 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 CQR58579.1 - 0.12 12.3 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 CQR58579.1 - 0.15 12.1 0.0 0.25 11.3 0.0 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 CQR58579.1 - 0.16 11.7 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 CQR58579.1 - 0.18 11.5 0.1 0.34 10.7 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein VanW PF04294.13 CQR58580.1 - 9.6e-48 161.1 0.0 1.4e-47 160.6 0.0 1.3 1 0 0 1 1 1 1 VanW like protein G5 PF07501.12 CQR58580.1 - 1.1e-11 45.0 0.1 2.3e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 G5 domain PG_binding_4 PF12229.8 CQR58580.1 - 0.00017 21.8 0.0 0.0059 16.9 0.0 2.5 2 0 0 2 2 2 1 Putative peptidoglycan binding domain CBS PF00571.28 CQR58581.1 - 0.00012 22.5 0.0 0.0011 19.4 0.0 2.0 2 0 0 2 2 2 1 CBS domain Endopep_inhib PF16800.5 CQR58582.1 - 6.1e-24 84.7 0.6 7.6e-24 84.4 0.6 1.0 1 0 0 1 1 1 1 IseA DL-endopeptidase inhibitor HTH_3 PF01381.22 CQR58583.1 - 8.1e-16 57.8 0.0 9e-16 57.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR58583.1 - 8.8e-10 38.5 0.1 9.9e-10 38.3 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR58583.1 - 2.3e-07 31.1 0.0 2.7e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 CQR58583.1 - 3.1e-07 30.6 0.0 3.5e-07 30.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 CQR58583.1 - 1.1e-05 24.8 0.1 6.6e-05 22.4 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 CQR58583.1 - 0.00026 20.5 0.0 0.00071 19.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR58583.1 - 0.00031 20.6 0.0 0.0017 18.3 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 CQR58583.1 - 0.00034 20.3 0.5 0.0043 16.8 0.2 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 CQR58583.1 - 0.002 18.1 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 CQR58583.1 - 0.0029 17.4 0.0 0.021 14.6 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 CQR58583.1 - 0.0034 17.2 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 CQR58583.1 - 0.013 15.2 0.0 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Phage_CI_repr PF07022.13 CQR58583.1 - 0.014 15.4 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 CQR58583.1 - 0.024 14.5 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_25 PF13413.6 CQR58583.1 - 0.025 14.4 0.1 0.029 14.2 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 CQR58583.1 - 0.036 14.2 0.1 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 CQR58583.1 - 0.044 13.7 0.0 0.084 12.8 0.0 1.4 2 0 0 2 2 2 0 MarR family HTH_29 PF13551.6 CQR58583.1 - 0.075 13.1 0.1 0.26 11.3 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_7 PF02796.15 CQR58583.1 - 0.1 12.7 0.3 2 8.6 0.1 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 CQR58583.1 - 0.14 12.1 0.0 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DcuC PF03606.15 CQR58584.1 - 0.00037 19.1 3.0 0.00039 19.0 3.0 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier DUF1295 PF06966.12 CQR58584.1 - 0.015 14.8 1.5 0.016 14.7 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1295) BatA PF07584.11 CQR58584.1 - 0.06 13.7 1.2 0.086 13.2 0.0 1.8 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DHHC PF01529.20 CQR58584.1 - 0.13 12.4 2.4 0.17 12.0 2.4 1.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF5385 PF17359.2 CQR58584.1 - 0.86 9.1 4.3 0.18 11.4 0.4 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF5385) Esterase PF00756.20 CQR58585.1 - 7.7e-23 81.4 0.0 1.5e-22 80.5 0.0 1.4 1 1 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 CQR58585.1 - 0.00032 20.0 0.0 0.00052 19.4 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 CQR58585.1 - 0.00081 19.3 0.0 0.082 12.7 0.0 2.1 1 1 1 2 2 2 2 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.21 CQR58585.1 - 0.00094 18.7 0.0 0.005 16.3 0.0 2.0 2 1 0 2 2 2 1 Prolyl oligopeptidase family Esterase_phd PF10503.9 CQR58585.1 - 0.0037 16.8 0.3 0.0094 15.5 0.3 1.7 1 1 0 1 1 1 1 Esterase PHB depolymerase Lyase_1 PF00206.20 CQR58586.1 - 1.1e-80 271.4 0.0 1.7e-80 270.7 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 CQR58586.1 - 1.5e-24 86.5 0.0 3.2e-24 85.5 0.0 1.6 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.19 CQR58587.1 - 3.5e-152 507.2 0.0 4e-152 507.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 CQR58587.1 - 0.0033 17.0 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 CQR58587.1 - 0.13 12.0 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 PP-loop family Oxygenase-NA PF09859.9 CQR58587.1 - 0.15 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Oxygenase, catalysing oxidative methylation of damaged DNA OTCace PF00185.24 CQR58588.1 - 9.6e-61 204.5 0.0 1.3e-60 204.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 CQR58588.1 - 9.1e-54 181.5 0.0 1.4e-53 180.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Glyco_hydro_101 PF12905.7 CQR58588.1 - 0.00035 20.1 0.0 0.0006 19.3 0.0 1.4 1 0 0 1 1 1 1 Endo-alpha-N-acetylgalactosaminidase Toxin_31 PF08119.11 CQR58588.1 - 0.23 11.2 0.0 0.48 10.2 0.0 1.4 1 0 0 1 1 1 0 Scorpion acidic alpha-KTx toxin family Aminotran_3 PF00202.21 CQR58589.1 - 7e-115 383.9 0.1 8.9e-115 383.6 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 CQR58589.1 - 2.7e-05 23.3 0.0 4.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 CQR58589.1 - 0.0019 17.5 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 CQR58589.1 - 0.0054 16.1 0.1 0.012 15.0 0.1 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase HetR_C PF18460.1 CQR58589.1 - 0.047 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain DegT_DnrJ_EryC1 PF01041.17 CQR58589.1 - 0.051 12.9 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AA_kinase PF00696.28 CQR58591.1 - 3.2e-44 151.3 2.5 3.7e-44 151.1 2.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family ArgJ PF01960.18 CQR58592.1 - 1.8e-146 487.7 13.3 2e-146 487.6 13.3 1.0 1 0 0 1 1 1 1 ArgJ family Semialdhyde_dh PF01118.24 CQR58593.1 - 5e-33 114.1 0.0 8e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 CQR58593.1 - 1.7e-23 83.7 0.0 2.9e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 CQR58593.1 - 0.00033 21.5 0.1 0.0022 18.8 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 CQR58593.1 - 0.0056 16.8 0.1 0.026 14.6 0.0 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus YitT_membrane PF02588.15 CQR58594.1 - 2.4e-61 206.7 15.0 3.1e-61 206.3 15.0 1.1 1 0 0 1 1 1 1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2179 PF10035.9 CQR58594.1 - 2.8e-21 75.0 0.0 5e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) PCRF PF03462.18 CQR58595.1 - 1.1e-60 204.8 0.2 5.9e-60 202.4 0.0 1.9 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 CQR58595.1 - 3.2e-44 149.6 1.2 5.4e-44 148.8 1.2 1.4 1 0 0 1 1 1 1 RF-1 domain MIR PF02815.19 CQR58595.1 - 0.012 15.4 0.7 0.033 14.1 0.1 1.9 2 0 0 2 2 2 0 MIR domain ABC_tran_CTD PF16326.5 CQR58595.1 - 0.027 14.7 0.0 0.027 14.7 0.0 3.5 3 1 1 4 4 4 0 ABC transporter C-terminal domain SecA_DEAD PF07517.14 CQR58596.1 - 5.3e-134 446.0 5.2 9.8e-134 445.2 5.2 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.13 CQR58596.1 - 1.7e-67 227.3 6.6 5.4e-67 225.7 6.6 1.9 1 0 0 1 1 1 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 CQR58596.1 - 6e-42 142.8 4.4 6.3e-42 142.7 2.1 2.2 2 0 0 2 2 2 1 SecA preprotein cross-linking domain SEC-C PF02810.15 CQR58596.1 - 1.7e-10 40.6 9.6 2.6e-10 40.0 9.6 1.3 1 0 0 1 1 1 1 SEC-C motif Helicase_C PF00271.31 CQR58596.1 - 0.00019 21.7 0.1 0.00062 20.1 0.1 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 CQR58596.1 - 0.00035 20.4 0.1 0.0022 17.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Herpes_UL92 PF03048.14 CQR58596.1 - 0.75 9.6 3.5 2.7 7.7 0.0 3.2 3 1 0 4 4 4 0 UL92 family TssO PF17561.2 CQR58596.1 - 0.78 9.8 7.6 0.047 13.8 1.4 2.0 2 0 0 2 2 2 0 Type VI secretion system, TssO Ribosomal_S30AE PF02482.19 CQR58597.1 - 6.1e-30 103.8 0.1 1.1e-29 103.0 0.1 1.4 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein Ribosom_S30AE_C PF16321.5 CQR58597.1 - 1.2e-28 98.6 0.6 2.7e-28 97.4 0.6 1.6 1 0 0 1 1 1 1 Sigma 54 modulation/S30EA ribosomal protein C terminus SLH PF00395.20 CQR58598.1 - 1e-41 140.7 5.2 6.7e-15 54.8 0.1 3.5 3 0 0 3 3 3 3 S-layer homology domain fn3 PF00041.21 CQR58598.1 - 0.00033 20.9 1.9 0.32 11.4 0.2 3.3 3 0 0 3 3 3 2 Fibronectin type III domain Pur_ac_phosph_N PF16656.5 CQR58598.1 - 0.00094 19.7 11.5 0.14 12.8 0.2 2.9 3 0 0 3 3 3 2 Purple acid Phosphatase, N-terminal domain GYF PF02213.16 CQR58598.1 - 0.056 13.1 0.2 0.12 12.0 0.2 1.6 1 0 0 1 1 1 0 GYF domain Arylsulfotran_N PF17425.2 CQR58598.1 - 0.24 11.5 5.5 0.28 11.2 1.5 2.9 2 1 1 3 3 3 0 Arylsulfotransferase Ig-like domain Latrotoxin_C PF15658.6 CQR58599.1 - 0.016 14.9 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Latrotoxin C-terminal domain CSD PF00313.22 CQR58600.1 - 7.3e-32 109.0 0.7 7.8e-32 108.9 0.7 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Glycos_transf_2 PF00535.26 CQR58601.1 - 3.2e-21 75.9 0.0 5.3e-21 75.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 CQR58601.1 - 1.3e-09 38.4 1.0 2.5e-09 37.5 0.4 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR58601.1 - 4.5e-05 23.1 0.1 7.2e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_17 PF13431.6 CQR58601.1 - 0.00012 22.2 0.6 0.55 10.7 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat Glyco_transf_49 PF13896.6 CQR58601.1 - 0.0049 16.3 0.0 0.0076 15.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl-transferase for dystroglycan TPR_8 PF13181.6 CQR58601.1 - 3.5 8.1 6.8 81 3.8 1.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat LicD PF04991.13 CQR58602.1 - 1.2e-35 123.7 0.0 1.9e-35 123.0 0.0 1.3 1 0 0 1 1 1 1 LicD family Choline_kinase PF01633.20 CQR58603.1 - 0.0026 17.4 0.2 0.0028 17.3 0.2 1.0 1 0 0 1 1 1 1 Choline/ethanolamine kinase TylF PF05711.11 CQR58604.1 - 8.8e-15 54.7 0.0 2.2e-14 53.4 0.0 1.6 1 1 0 1 1 1 1 Macrocin-O-methyltransferase (TylF) Methyltransf_24 PF13578.6 CQR58604.1 - 3.4e-06 28.0 0.0 7.2e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PglD_N PF17836.1 CQR58604.1 - 1.3e-05 25.8 0.2 5e-05 23.9 0.6 1.8 2 0 0 2 2 2 1 PglD N-terminal domain CoA_binding PF02629.19 CQR58604.1 - 0.054 14.2 0.1 0.099 13.3 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain LicD PF04991.13 CQR58605.1 - 1e-38 133.8 0.2 1.2e-38 133.5 0.2 1.1 1 0 0 1 1 1 1 LicD family GDPD PF03009.17 CQR58606.1 - 6.5e-42 144.1 0.0 1.3e-41 143.1 0.0 1.5 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Metallophos PF00149.28 CQR58607.1 - 1e-15 58.8 2.6 1.8e-15 58.0 2.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 CQR58607.1 - 9e-06 26.0 0.1 1.6e-05 25.2 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PPO1_DWL PF12142.8 CQR58607.1 - 0.042 13.6 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 0 Polyphenol oxidase middle domain GLF PF03275.13 CQR58608.1 - 9.3e-81 270.4 5.5 1.3e-80 269.9 5.5 1.2 1 0 0 1 1 1 1 UDP-galactopyranose mutase NAD_binding_8 PF13450.6 CQR58608.1 - 2.6e-17 62.8 0.0 5.8e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 CQR58608.1 - 2e-05 24.1 0.0 4.4e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 CQR58608.1 - 0.00055 19.4 0.0 0.001 18.5 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR58608.1 - 0.00097 17.9 0.0 0.0014 17.4 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 CQR58608.1 - 0.009 15.3 0.6 0.024 13.9 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 CQR58608.1 - 0.1 11.6 0.0 0.21 10.6 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_2 PF07992.14 CQR58608.1 - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 CQR58608.1 - 0.22 10.7 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain CTP_transf_like PF01467.26 CQR58609.1 - 4.4e-15 56.1 0.1 1.5e-14 54.4 0.1 2.0 2 0 0 2 2 2 1 Cytidylyltransferase-like Methyltransf_25 PF13649.6 CQR58609.1 - 0.0034 18.0 0.0 0.011 16.4 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 CQR58609.1 - 0.005 16.5 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 CQR58609.1 - 0.006 15.7 0.0 0.014 14.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase rhaM PF05336.13 CQR58609.1 - 0.0067 16.5 0.2 0.34 11.0 0.0 2.9 3 0 0 3 3 3 1 L-rhamnose mutarotase Methyltransf_11 PF08241.12 CQR58609.1 - 0.02 15.5 0.0 0.057 14.1 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 CQR58610.1 - 3e-26 92.2 0.3 1e-25 90.5 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 CQR58610.1 - 8.8e-11 42.1 0.0 2.5e-10 40.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 CQR58610.1 - 4.8e-07 29.5 0.8 9.4e-07 28.6 0.2 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR58610.1 - 0.0062 17.0 0.0 0.017 15.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family 2 ThiF PF00899.21 CQR58610.1 - 0.15 11.4 0.0 0.75 9.1 0.0 1.9 2 0 0 2 2 2 0 ThiF family Methyltransf_11 PF08241.12 CQR58611.1 - 1.2e-13 51.5 0.0 2.8e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR58611.1 - 1.7e-12 47.5 0.0 2.6e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR58611.1 - 1.1e-08 35.0 0.1 1.4e-07 31.4 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR58611.1 - 2.1e-08 34.8 0.0 7.6e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58611.1 - 5.4e-07 30.3 0.0 2e-06 28.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR58611.1 - 0.00024 20.5 0.0 0.00055 19.3 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 CQR58611.1 - 0.0031 16.6 0.1 0.0056 15.8 0.1 1.4 1 0 0 1 1 1 1 DREV methyltransferase zf-RRN7 PF11781.8 CQR58611.1 - 0.0058 16.3 0.5 1.3 8.8 0.1 2.6 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Methyltransf_29 PF03141.16 CQR58611.1 - 0.012 14.2 0.0 0.019 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PBECR3 PF18812.1 CQR58611.1 - 0.015 15.3 0.7 0.048 13.6 0.6 1.9 1 1 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 GFO_IDH_MocA PF01408.22 CQR58611.1 - 0.019 15.8 0.0 0.039 14.8 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Prim_Zn_Ribbon PF08273.12 CQR58611.1 - 0.051 13.8 1.9 0.063 13.6 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase PglD_N PF17836.1 CQR58611.1 - 0.094 13.4 0.1 0.48 11.1 0.0 2.3 2 0 0 2 2 2 0 PglD N-terminal domain DapB_N PF01113.20 CQR58611.1 - 0.17 12.0 0.0 0.74 9.9 0.0 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Glycos_transf_2 PF00535.26 CQR58612.1 - 1.9e-31 109.2 2.4 7.6e-31 107.2 0.4 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR58612.1 - 5.2e-12 45.8 0.3 1.2e-11 44.6 0.3 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 CQR58612.1 - 1.1e-11 45.1 0.0 2e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR58612.1 - 0.00081 19.9 0.0 0.004 17.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Stealth_CR4 PF17103.5 CQR58612.1 - 0.032 14.1 0.4 3.3 7.7 0.1 2.7 2 0 0 2 2 2 0 Stealth protein CR4, conserved region 4 Glycos_transf_2 PF00535.26 CQR58613.1 - 2e-31 109.1 0.4 4.1e-31 108.1 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR58613.1 - 2e-20 73.4 3.3 3.1e-20 72.8 3.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 CQR58613.1 - 2.1e-08 34.4 0.0 3e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 CQR58613.1 - 0.0018 18.7 0.9 0.0039 17.7 0.3 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 2-Hacid_dh_C PF02826.19 CQR58613.1 - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RgpF PF05045.12 CQR58614.1 - 1.5e-70 238.4 1.1 2.6e-70 237.6 0.2 1.7 2 0 0 2 2 2 1 Rhamnan synthesis protein F Tissue_fac PF01108.17 CQR58614.1 - 0.058 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Tissue factor HAD_2 PF13419.6 CQR58615.1 - 0.0021 18.1 0.5 0.0069 16.5 0.5 1.9 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase PglD_N PF17836.1 CQR58615.1 - 0.0038 17.8 0.2 0.016 15.9 0.2 2.2 1 0 0 1 1 1 1 PglD N-terminal domain CoA_binding PF02629.19 CQR58615.1 - 0.083 13.6 0.0 0.17 12.6 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain Acid_phosphat_B PF03767.14 CQR58615.1 - 0.1 12.2 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_like PF13242.6 CQR58615.1 - 0.11 12.5 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like GFO_IDH_MocA PF01408.22 CQR58617.1 - 1.8e-25 90.1 0.0 3e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CTP_transf_like PF01467.26 CQR58617.1 - 1.3e-15 57.8 0.6 1.2e-14 54.8 0.1 2.5 2 1 0 2 2 2 1 Cytidylyltransferase-like 2-Hacid_dh_C PF02826.19 CQR58617.1 - 0.0064 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_syn PF06574.12 CQR58617.1 - 0.013 15.4 0.0 0.032 14.1 0.0 1.7 2 0 0 2 2 2 0 FAD synthetase F420_oxidored PF03807.17 CQR58617.1 - 0.018 15.6 0.0 0.042 14.4 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 CQR58617.1 - 0.11 12.6 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Glycos_transf_2 PF00535.26 CQR58619.1 - 9.9e-21 74.3 0.0 8.6e-20 71.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 2 TPR_2 PF07719.17 CQR58619.1 - 9.2e-11 41.0 12.1 0.0015 18.5 0.1 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 CQR58619.1 - 8.1e-10 38.7 1.1 0.14 13.0 0.0 5.8 4 2 1 5 5 5 1 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.6 CQR58619.1 - 4e-09 36.9 0.2 1.9e-08 34.7 0.2 2.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 CQR58619.1 - 2.5e-06 27.2 0.4 4.8e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase like family 2 TPR_7 PF13176.6 CQR58619.1 - 3.9e-06 26.5 8.4 0.011 15.7 0.0 5.5 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_11 PF13414.6 CQR58619.1 - 5.1e-06 26.1 15.9 0.037 13.7 0.3 4.8 4 0 0 4 4 4 3 TPR repeat TPR_1 PF00515.28 CQR58619.1 - 1.1e-05 25.0 16.7 0.074 12.9 1.0 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 CQR58619.1 - 1.4e-05 25.3 7.1 1.9 8.9 0.1 5.1 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR58619.1 - 5.5e-05 23.1 14.4 0.19 12.0 0.0 7.0 8 0 0 8 8 7 1 Tetratricopeptide repeat TPR_19 PF14559.6 CQR58619.1 - 0.00017 22.0 1.0 13 6.4 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 CQR58619.1 - 0.00025 21.6 3.5 0.031 14.9 0.3 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat Clathrin PF00637.20 CQR58619.1 - 0.00052 19.9 13.0 0.019 14.8 0.2 4.6 3 2 1 4 4 4 2 Region in Clathrin and VPS Glyco_tranf_2_3 PF13641.6 CQR58619.1 - 0.0057 16.6 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_10 PF13374.6 CQR58619.1 - 0.03 14.2 9.8 0.069 13.0 0.1 4.4 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_15 PF13429.6 CQR58619.1 - 0.03 13.5 3.3 2.2 7.4 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.20 CQR58619.1 - 0.11 12.8 0.1 44 4.7 0.0 4.0 4 0 0 4 4 3 0 PPR repeat TPR_6 PF13174.6 CQR58619.1 - 0.18 12.5 2.5 16 6.4 0.0 3.9 4 0 0 4 4 3 0 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR58619.1 - 0.31 11.3 11.1 5.4 7.3 0.0 3.6 3 0 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Sel1 PF08238.12 CQR58619.1 - 0.48 11.2 3.8 42 5.0 0.0 3.2 2 1 1 3 3 3 0 Sel1 repeat DUF2989 PF11207.8 CQR58619.1 - 4 7.2 8.7 7 6.4 0.2 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF2989) FliS PF02561.14 CQR58621.1 - 1.9e-36 124.8 3.9 2.2e-36 124.6 3.9 1.0 1 0 0 1 1 1 1 Flagellar protein FliS DUF4391 PF14335.6 CQR58621.1 - 0.015 15.0 0.8 0.017 14.8 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) mRNA_stabil PF13929.6 CQR58621.1 - 0.029 13.3 0.4 0.036 13.1 0.4 1.1 1 0 0 1 1 1 0 mRNA stabilisation Herpes_UL17 PF04559.12 CQR58621.1 - 0.068 12.0 0.0 0.083 11.7 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus UL17 protein NRIP1_repr_2 PF15688.5 CQR58621.1 - 0.085 12.7 0.1 0.089 12.7 0.1 1.2 1 0 0 1 1 1 0 Nuclear receptor-interacting protein 1 repression 2 FliD_C PF07195.12 CQR58622.1 - 4.4e-54 183.4 16.5 4.4e-54 183.4 16.5 2.2 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus FliD_N PF02465.18 CQR58622.1 - 7.8e-25 87.4 4.8 7.8e-25 87.4 4.8 4.8 3 2 2 5 5 5 1 Flagellar hook-associated protein 2 N-terminus Flagellin_IN PF07196.13 CQR58622.1 - 3e-08 33.7 6.1 3e-08 33.7 6.1 4.2 3 0 0 3 3 3 1 Flagellin hook IN motif COG2 PF06148.11 CQR58622.1 - 0.061 13.4 0.8 9.1 6.4 0.0 3.3 3 0 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3145 PF11343.8 CQR58622.1 - 0.084 12.4 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3145) Dynactin_p22 PF07426.11 CQR58622.1 - 0.43 10.4 6.1 2.1 8.2 0.9 2.6 2 0 0 2 2 2 0 Dynactin subunit p22 FlaG PF03646.15 CQR58623.1 - 1.8e-21 76.2 0.5 2.1e-21 75.9 0.5 1.1 1 0 0 1 1 1 1 FlaG protein XRCC4 PF06632.12 CQR58623.1 - 0.03 13.2 0.0 0.033 13.1 0.0 1.0 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 Flagellin_N PF00669.20 CQR58624.1 - 2.5e-41 141.1 12.1 2.5e-41 141.1 12.1 2.4 2 1 0 2 2 2 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 CQR58624.1 - 3.9e-27 94.4 5.0 3.9e-27 94.4 5.0 2.9 3 1 1 4 4 4 1 Bacterial flagellin C-terminal helical region DUF4208 PF13907.6 CQR58624.1 - 0.057 13.9 0.0 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) AIP3 PF03915.13 CQR58624.1 - 0.1 11.6 6.4 1.3 8.1 0.3 2.1 2 0 0 2 2 2 0 Actin interacting protein 3 DUF2203 PF09969.9 CQR58624.1 - 0.3 11.8 2.2 3.3 8.4 0.2 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) CsrA PF02599.16 CQR58625.1 - 2.3e-25 88.3 1.9 3.1e-25 87.9 1.9 1.2 1 0 0 1 1 1 1 Global regulator protein family FliW PF02623.15 CQR58626.1 - 3.6e-36 123.7 0.1 4.3e-36 123.5 0.1 1.1 1 0 0 1 1 1 1 FliW protein Porin_8 PF16966.5 CQR58626.1 - 0.072 12.0 0.0 0.083 11.8 0.0 1.1 1 0 0 1 1 1 0 Porin-like glycoporin RafY Flagellin_N PF00669.20 CQR58627.1 - 8.9e-23 80.9 5.3 8.9e-23 80.9 5.3 2.2 2 0 0 2 2 2 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 CQR58627.1 - 7.3e-07 29.5 2.6 7.3e-07 29.5 2.6 2.7 4 0 0 4 4 4 1 Bacterial flagellin C-terminal helical region Phage_GP20 PF06810.11 CQR58627.1 - 0.054 13.3 1.0 2.6 7.8 0.1 2.5 2 0 0 2 2 2 0 Phage minor structural protein GP20 T4SS PF07996.11 CQR58627.1 - 0.26 11.7 7.2 0.59 10.5 1.9 2.5 2 1 0 2 2 2 0 Type IV secretion system proteins NPV_P10 PF05531.12 CQR58627.1 - 0.31 11.5 4.3 0.95 10.0 0.3 2.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4097 PF13349.6 CQR58627.1 - 0.63 9.3 8.0 2.7 7.3 7.3 2.1 1 1 0 1 1 1 0 Putative adhesin Flg_bbr_C PF06429.13 CQR58628.1 - 4e-14 52.5 0.6 1.8e-13 50.4 0.6 2.2 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 CQR58628.1 - 5.1e-06 26.3 2.6 5.1e-06 26.3 2.6 2.8 2 0 0 2 2 2 1 Flagella basal body rod protein DUF1319 PF07028.11 CQR58628.1 - 0.0021 18.3 0.1 0.0053 17.0 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1319) Fib_alpha PF08702.10 CQR58628.1 - 0.027 14.6 0.7 0.027 14.6 0.7 2.8 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 CQR58628.1 - 0.15 12.1 2.8 0.3 11.1 0.4 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 CQR58628.1 - 0.21 11.9 14.2 0.038 14.2 1.9 4.0 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) Uso1_p115_C PF04871.13 CQR58628.1 - 0.23 11.9 2.4 1.1 9.6 0.1 2.6 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region CENP-F_leu_zip PF10473.9 CQR58628.1 - 0.93 9.5 5.3 1.3 9.1 0.6 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin-6_N PF09177.11 CQR58628.1 - 7.5 7.2 7.0 3.9 8.1 2.4 2.8 2 1 0 2 2 2 0 Syntaxin 6, N-terminal FlgN PF05130.12 CQR58629.1 - 1e-18 68.3 12.1 1.2e-18 68.0 12.1 1.0 1 0 0 1 1 1 1 FlgN protein Ccdc124 PF06244.12 CQR58629.1 - 0.0086 16.6 0.2 0.081 13.5 0.1 2.0 2 0 0 2 2 2 1 Coiled-coil domain-containing protein 124 /Oxs1 CortBP2 PF09727.9 CQR58629.1 - 0.01 15.8 8.9 0.013 15.4 8.9 1.1 1 0 0 1 1 1 0 Cortactin-binding protein-2 Mcm10 PF09332.11 CQR58629.1 - 0.08 12.4 0.5 0.14 11.6 0.5 1.3 1 0 0 1 1 1 0 Mcm10 replication factor FlgM PF04316.13 CQR58630.1 - 5.8e-13 49.0 4.6 1.1e-12 48.2 4.6 1.4 1 0 0 1 1 1 1 Anti-sigma-28 factor, FlgM Wbp11 PF09429.10 CQR58630.1 - 0.68 10.4 6.9 1.6 9.2 6.9 1.6 1 1 0 1 1 1 0 WW domain binding protein 11 zinc-ribbons_6 PF07191.12 CQR58631.1 - 0.002 18.1 4.7 0.085 12.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbons DZR PF12773.7 CQR58631.1 - 0.0049 16.9 8.2 0.15 12.1 0.7 2.4 1 1 1 2 2 2 2 Double zinc ribbon HNH_5 PF14279.6 CQR58631.1 - 0.0072 16.2 0.8 1 9.3 0.0 2.4 2 0 0 2 2 2 1 HNH endonuclease RecR PF02132.15 CQR58631.1 - 0.0087 15.6 7.3 0.023 14.3 0.7 2.8 2 0 0 2 2 2 1 RecR protein Ribosomal_L32p PF01783.23 CQR58631.1 - 0.022 15.0 2.4 0.19 12.0 0.3 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family HTH_24 PF13412.6 CQR58631.1 - 0.059 12.9 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NMD3 PF04981.13 CQR58631.1 - 0.37 10.2 7.5 1.5 8.3 1.0 2.2 2 0 0 2 2 2 0 NMD3 family zf-C4pol PF14260.6 CQR58631.1 - 0.5 10.9 7.9 2.3 8.7 0.7 2.3 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zinc_ribbon_2 PF13240.6 CQR58631.1 - 0.78 9.5 4.5 9.8 6.1 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain PolC_DP2 PF03833.13 CQR58631.1 - 1 7.1 4.4 0.24 9.2 0.1 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-AD PF07776.15 CQR58631.1 - 2 8.7 8.1 2.6 8.3 0.7 2.6 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) zf-FPG_IleRS PF06827.14 CQR58631.1 - 3.8 7.5 13.2 6 6.8 0.2 3.5 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.6 CQR58631.1 - 4.2 6.9 9.6 11 5.5 1.3 2.7 2 1 0 2 2 2 0 zinc-ribbon domain C1_2 PF03107.16 CQR58631.1 - 4.3 7.7 7.5 0.64 10.4 0.2 2.5 2 1 1 3 3 3 0 C1 domain Pribosyltran PF00156.27 CQR58632.1 - 0.0096 15.4 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Repressor_Mnt PF11423.8 CQR58632.1 - 0.089 12.6 0.9 5.1 7.0 0.0 2.4 2 0 0 2 2 2 0 Regulatory protein Mnt DZR PF12773.7 CQR58632.1 - 0.09 12.8 9.9 0.15 12.1 3.8 2.5 1 1 1 2 2 2 0 Double zinc ribbon Helicase_C PF00271.31 CQR58633.1 - 2.7e-12 47.0 0.0 5.4e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 CQR58633.1 - 3e-05 23.9 0.0 7.7e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 CQR58633.1 - 3.2e-05 24.0 0.0 0.001 19.1 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 CQR58633.1 - 0.00044 20.0 0.5 0.002 17.9 0.0 2.3 3 0 0 3 3 3 1 AAA domain Flavi_DEAD PF07652.14 CQR58633.1 - 0.055 13.4 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 Flavivirus DEAD domain AAA_19 PF13245.6 CQR58633.1 - 0.089 13.1 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Response_reg PF00072.24 CQR58635.1 - 3.6e-30 104.4 0.3 6e-30 103.7 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR58635.1 - 7.8e-23 79.8 0.3 1.8e-22 78.6 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 CQR58635.1 - 3.4e-05 23.4 0.0 6.2e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR58635.1 - 0.0033 16.9 0.0 0.0087 15.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 CQR58635.1 - 0.007 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain XFP_C PF09363.10 CQR58635.1 - 0.0099 15.4 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 1 XFP C-terminal domain HP1451_C PF18472.1 CQR58635.1 - 0.13 12.3 0.2 1.6 8.8 0.0 2.3 2 0 0 2 2 2 0 HP1451 C-terminal domain DegS PF05384.11 CQR58636.1 - 1.1e-52 177.8 16.2 1.1e-52 177.8 16.2 1.8 2 0 0 2 2 2 1 Sensor protein DegS HisKA_3 PF07730.13 CQR58636.1 - 3e-14 53.3 7.2 4.7e-14 52.7 0.4 3.6 3 0 0 3 3 3 1 Histidine kinase HATPase_c PF02518.26 CQR58636.1 - 1.8e-09 38.1 0.0 7.3e-09 36.1 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58636.1 - 2.3e-06 27.6 0.0 6.7e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF948 PF06103.11 CQR58636.1 - 0.76 10.1 3.2 3.2 8.1 1.0 2.9 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) HNOBA PF07701.14 CQR58636.1 - 0.85 9.0 5.6 7.6 5.9 0.9 2.4 2 1 0 2 2 2 0 Heme NO binding associated Cu_amine_oxidN1 PF07833.11 CQR58637.1 - 5.1e-32 110.2 3.3 5.1e-23 81.4 0.3 4.2 3 2 1 4 4 4 2 Copper amine oxidase N-terminal domain NAGPA PF09992.9 CQR58637.1 - 5.9e-32 111.2 7.7 2.6e-26 92.9 1.3 2.9 3 0 0 3 3 3 2 Phosphodiester glycosidase Big_2 PF02368.18 CQR58637.1 - 1.5 8.8 11.8 0.11 12.4 5.0 2.8 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 2) Big_5 PF13205.6 CQR58638.1 - 1.3e-51 173.8 48.8 6.9e-14 52.5 0.3 8.8 8 1 1 9 9 9 7 Bacterial Ig-like domain SWM_repeat PF13753.6 CQR58638.1 - 7.6e-41 138.2 25.4 3.1e-14 52.9 0.6 6.2 6 0 0 6 6 6 4 Putative flagellar system-associated repeat SLH PF00395.20 CQR58638.1 - 2.2e-33 114.0 4.5 6.5e-13 48.5 0.2 3.6 3 0 0 3 3 3 3 S-layer homology domain GPI-anchored PF10342.9 CQR58638.1 - 0.012 16.4 1.8 31 5.4 0.0 4.6 3 0 0 3 3 3 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family S-AdoMet_synt_C PF02773.16 CQR58639.1 - 1.9e-71 238.5 0.5 1.2e-70 235.9 0.0 2.2 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 CQR58639.1 - 6.7e-51 171.6 0.0 1.2e-50 170.8 0.0 1.4 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 CQR58639.1 - 5.2e-43 145.7 0.1 1.3e-42 144.5 0.1 1.7 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain SASP PF00269.20 CQR58640.1 - 1.7e-22 79.2 0.1 1e-19 70.3 0.1 2.1 1 1 0 1 1 1 1 Small, acid-soluble spore proteins, alpha/beta type SLH PF00395.20 CQR58642.1 - 3.6e-10 39.7 3.6 0.0044 17.0 0.0 3.8 3 0 0 3 3 3 3 S-layer homology domain TOH_N PF12549.8 CQR58642.1 - 0.085 12.7 0.8 2.4 8.1 0.0 3.0 3 0 0 3 3 3 0 Tyrosine hydroxylase N terminal Glycoamylase PF10091.9 CQR58643.1 - 0.015 14.8 0.1 0.019 14.5 0.1 1.1 1 0 0 1 1 1 0 Putative glucoamylase OMS28_porin PF03532.13 CQR58643.1 - 0.023 13.9 0.3 0.026 13.8 0.3 1.1 1 0 0 1 1 1 0 OMS28 porin BBP1_C PF15272.6 CQR58643.1 - 0.031 14.1 2.8 0.034 14.0 2.8 1.1 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal HGAL PF15666.5 CQR58643.1 - 0.041 14.0 0.7 0.074 13.2 0.3 1.6 1 1 0 1 1 1 0 Germinal center-associated lymphoma THOC7 PF05615.13 CQR58643.1 - 0.059 13.6 4.6 0.2 11.9 4.6 1.8 1 1 0 1 1 1 0 Tho complex subunit 7 DUF2059 PF09832.9 CQR58643.1 - 0.065 13.3 2.6 0.065 13.3 2.6 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2059) GAF_2 PF13185.6 CQR58643.1 - 0.1 12.9 0.0 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 GAF domain SLH PF00395.20 CQR58644.1 - 3.6e-22 78.1 5.0 5.5e-08 32.7 0.0 4.5 3 1 0 3 3 3 3 S-layer homology domain DUF956 PF06115.11 CQR58644.1 - 0.013 15.2 0.0 0.051 13.3 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF956) YHS PF04945.13 CQR58644.1 - 0.4 10.8 2.2 41 4.4 1.3 2.9 2 0 0 2 2 2 0 YHS domain Glycos_transf_4 PF00953.21 CQR58645.1 - 1.3e-44 152.0 21.0 1.3e-44 152.0 21.0 2.4 3 0 0 3 3 3 1 Glycosyl transferase family 4 DDDD PF10161.9 CQR58645.1 - 0.8 9.5 2.3 37 4.2 0.3 3.1 2 0 0 2 2 2 0 Putative mitochondrial precursor protein Glyco_tran_WecB PF03808.13 CQR58646.1 - 6.9e-60 201.8 0.0 1e-59 201.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family PS_pyruv_trans PF04230.13 CQR58647.1 - 3.6e-37 128.8 0.0 4.5e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase DUF5516 PF17637.2 CQR58648.1 - 2.7 7.8 5.5 8.2 6.3 5.5 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5516) PGM_PMM_I PF02878.16 CQR58649.1 - 2.2e-40 137.6 0.0 4.6e-40 136.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 CQR58649.1 - 3e-25 88.6 0.1 5.3e-25 87.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 CQR58649.1 - 1.3e-23 83.5 0.0 3e-23 82.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 CQR58649.1 - 4.2e-10 39.6 0.0 1.4e-09 38.0 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain FabA PF07977.13 CQR58650.1 - 3.2e-32 111.0 0.0 4.4e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain MaoC_dehydratas PF01575.19 CQR58650.1 - 0.048 13.2 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 MaoC like domain 4HBT PF03061.22 CQR58650.1 - 0.083 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily EpuA PF11772.8 CQR58651.1 - 3.3e-13 49.1 1.0 4.8e-13 48.6 1.0 1.2 1 0 0 1 1 1 1 DNA-directed RNA polymerase subunit beta BCHF PF07284.11 CQR58651.1 - 0.0055 16.7 0.1 0.0064 16.5 0.1 1.1 1 0 0 1 1 1 1 2-vinyl bacteriochlorophyllide hydratase (BCHF) PBP_N PF17093.5 CQR58651.1 - 0.14 12.4 0.1 0.15 12.3 0.1 1.1 1 0 0 1 1 1 0 Penicillin-binding protein N-terminus Herpes_US9 PF06072.11 CQR58651.1 - 0.14 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 Flg_bbr_C PF06429.13 CQR58652.1 - 2.7e-17 62.7 3.4 3.9e-17 62.1 1.5 2.3 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 CQR58652.1 - 7e-10 38.6 0.4 2.5e-09 36.9 0.4 2.0 1 0 0 1 1 1 1 Flagella basal body rod protein Flg_bbr_C PF06429.13 CQR58653.1 - 8.6e-16 57.8 1.7 8.6e-16 57.8 1.7 2.2 3 0 0 3 3 3 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 CQR58653.1 - 1.5e-08 34.4 1.7 6.5e-08 32.3 1.9 2.1 2 0 0 2 2 2 1 Flagella basal body rod protein MreB_Mbl PF06723.13 CQR58654.1 - 4.3e-146 485.9 5.0 5e-146 485.7 5.0 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.20 CQR58654.1 - 4.4e-11 41.7 0.6 8.2e-10 37.5 0.1 2.1 2 0 0 2 2 2 1 Hsp70 protein FtsA PF14450.6 CQR58654.1 - 8.2e-11 42.2 0.5 1.6e-10 41.3 0.0 1.7 2 0 0 2 2 2 1 Cell division protein FtsA Actin PF00022.19 CQR58654.1 - 3.5e-09 35.8 0.0 5e-05 22.1 0.0 2.0 2 0 0 2 2 2 2 Actin EutA PF06277.11 CQR58654.1 - 1.7e-05 23.8 1.5 5.3e-05 22.3 0.4 2.0 1 1 0 2 2 2 1 Ethanolamine utilisation protein EutA DDR PF08841.10 CQR58654.1 - 3.3e-05 23.0 1.0 0.00046 19.3 0.4 2.2 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain PilM_2 PF11104.8 CQR58654.1 - 0.00022 20.4 0.1 0.033 13.2 0.0 2.3 2 0 0 2 2 2 2 Type IV pilus assembly protein PilM; Ppx-GppA PF02541.16 CQR58654.1 - 0.023 14.1 0.1 0.044 13.2 0.1 1.4 1 0 0 1 1 1 0 Ppx/GppA phosphatase family Fumble PF03630.14 CQR58654.1 - 0.034 13.3 0.0 0.057 12.6 0.0 1.5 1 1 0 1 1 1 0 Fumble Hydantoinase_A PF01968.18 CQR58654.1 - 0.038 13.2 0.3 0.066 12.5 0.3 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase MutL PF13941.6 CQR58654.1 - 0.052 12.1 0.1 0.081 11.5 0.1 1.3 1 0 0 1 1 1 0 MutL protein SpoIIID PF12116.8 CQR58655.1 - 2.4e-39 133.3 2.8 2.9e-39 133.0 2.8 1.1 1 0 0 1 1 1 1 Stage III sporulation protein D HTH_11 PF08279.12 CQR58655.1 - 0.0001 22.2 0.1 0.00016 21.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_7 PF02796.15 CQR58655.1 - 0.00028 20.9 0.1 0.0012 18.9 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 CQR58655.1 - 0.00035 20.3 0.1 0.00064 19.4 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 CQR58655.1 - 0.0014 18.4 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.6 CQR58655.1 - 0.0019 18.0 0.1 0.0041 16.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_50 PF18024.1 CQR58655.1 - 0.0038 16.8 0.4 0.22 11.2 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 CQR58655.1 - 0.0048 17.4 0.0 0.0091 16.5 0.0 1.5 1 1 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_22 PF13309.6 CQR58655.1 - 0.0069 16.4 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.6 CQR58655.1 - 0.0091 15.4 0.1 0.015 14.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.12 CQR58655.1 - 0.012 15.4 0.1 0.027 14.2 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 CQR58655.1 - 0.014 15.2 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain UPF0047 PF01894.17 CQR58655.1 - 0.015 15.4 0.1 0.016 15.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0047 LacI PF00356.21 CQR58655.1 - 0.02 14.7 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_AsnC-type PF13404.6 CQR58655.1 - 0.057 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TetR_N PF00440.23 CQR58655.1 - 0.058 13.2 0.0 0.096 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.16 CQR58655.1 - 0.061 12.9 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 CQR58655.1 - 0.065 13.7 0.3 0.11 13.0 0.3 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 CQR58655.1 - 0.076 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family GntR PF00392.21 CQR58655.1 - 0.084 12.5 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 CQR58655.1 - 0.12 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 CQR58655.1 - 0.16 11.7 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Peptidase_M23 PF01551.22 CQR58656.1 - 7.4e-21 74.2 1.2 1.1e-20 73.6 0.2 1.7 2 0 0 2 2 2 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.6 CQR58656.1 - 0.0007 19.4 0.1 0.0072 16.1 0.1 2.5 2 0 0 2 2 2 1 Biotin-lipoyl like RnfC_N PF13375.6 CQR58656.1 - 0.0067 16.4 0.5 4.9 7.2 0.0 2.6 1 1 1 2 2 2 2 RnfC Barrel sandwich hybrid domain YqfD PF06898.11 CQR58656.1 - 0.0075 15.1 0.6 0.017 14.0 0.2 1.7 2 0 0 2 2 2 1 Putative stage IV sporulation protein YqfD PTS_EIIA_1 PF00358.20 CQR58656.1 - 0.024 14.4 0.4 0.2 11.4 0.1 2.4 1 1 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SpoIID PF08486.10 CQR58657.1 - 2.9e-23 82.2 0.0 4.9e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein EPSP_synthase PF00275.20 CQR58658.1 - 8.2e-107 357.5 1.9 9.4e-107 357.3 1.9 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF1146 PF06612.11 CQR58659.1 - 6e-19 67.8 0.8 8.1e-19 67.4 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1146) Phage_holin_3_3 PF16083.5 CQR58659.1 - 0.0033 17.5 0.4 0.51 10.5 0.4 2.1 2 0 0 2 2 2 2 LydA holin phage, holin superfamily III DMT_YdcZ PF04657.13 CQR58659.1 - 0.021 15.1 2.8 0.57 10.5 0.2 2.0 1 1 1 2 2 2 0 Putative inner membrane exporter, YdcZ ATP-synt_DE_N PF02823.16 CQR58660.1 - 9e-28 96.0 0.7 1.2e-27 95.6 0.3 1.4 2 0 0 2 2 2 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_DE PF00401.20 CQR58660.1 - 1.1e-15 57.6 10.8 1.4e-15 57.2 10.8 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Peptidase_M35 PF02102.15 CQR58660.1 - 0.02 13.8 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 Deuterolysin metalloprotease (M35) family Ribosomal_TL5_C PF14693.6 CQR58660.1 - 0.023 15.1 0.1 0.073 13.4 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein TL5, C-terminal domain Tox-GHH2 PF15635.6 CQR58660.1 - 0.053 14.0 0.0 0.14 12.7 0.0 1.7 1 1 0 1 1 1 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 ATP-synt_ab PF00006.25 CQR58661.1 - 4.7e-66 222.5 0.0 7e-66 221.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 CQR58661.1 - 2.4e-18 66.4 0.1 6.8e-18 64.9 0.1 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 CQR58661.1 - 0.00082 19.2 0.1 0.013 15.3 0.2 2.7 2 1 0 2 2 2 1 T3SS EscN ATPase C-terminal domain RsgA_GTPase PF03193.16 CQR58661.1 - 0.0022 17.9 0.1 0.004 17.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_19 PF13245.6 CQR58661.1 - 0.017 15.4 0.6 0.049 14.0 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 CQR58661.1 - 0.023 15.1 0.0 0.41 11.1 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 CQR58661.1 - 0.053 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 CQR58661.1 - 0.061 12.2 0.2 0.11 11.4 0.2 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATPase PF06745.13 CQR58661.1 - 0.081 12.3 1.0 0.16 11.3 1.0 1.5 1 0 0 1 1 1 0 KaiC ABC_tran PF00005.27 CQR58661.1 - 0.084 13.4 0.1 0.21 12.1 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_30 PF13604.6 CQR58661.1 - 0.11 12.2 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt PF00231.19 CQR58662.1 - 1.9e-101 339.5 4.8 2.3e-101 339.2 4.8 1.0 1 0 0 1 1 1 1 ATP synthase Cytochrom_B562 PF07361.11 CQR58662.1 - 0.7 10.6 7.5 0.62 10.8 3.6 2.5 2 0 0 2 2 2 0 Cytochrome b562 ATP-synt_ab PF00006.25 CQR58663.1 - 5.8e-73 245.1 0.0 8.1e-73 244.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 CQR58663.1 - 4.8e-51 172.3 1.6 8.7e-51 171.5 1.6 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 CQR58663.1 - 1.2e-20 73.8 4.8 3.9e-20 72.1 4.8 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 CQR58663.1 - 0.00015 21.2 1.4 0.00022 20.6 0.2 1.9 2 0 0 2 2 2 1 KaiC HAS-barrel PF09378.10 CQR58663.1 - 0.0034 17.5 3.7 0.0047 17.1 1.3 2.5 2 1 0 2 2 2 1 HAS barrel domain OSCP PF00213.18 CQR58664.1 - 1.4e-46 158.8 0.3 1.6e-46 158.6 0.3 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit ATP-synt_B PF00430.18 CQR58665.1 - 2.2e-29 102.2 14.8 2.7e-29 101.9 14.8 1.0 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) Tcp10_C PF07202.13 CQR58665.1 - 0.031 14.2 0.2 0.033 14.1 0.2 1.2 1 0 0 1 1 1 0 T-complex protein 10 C-terminus MPTase-PolyVal PF18818.1 CQR58665.1 - 0.059 13.4 1.1 0.16 12.0 0.2 1.8 1 1 0 2 2 2 0 Metallopeptidase superfamily domain PIN_8 PF18476.1 CQR58665.1 - 0.07 13.0 6.7 0.083 12.7 6.7 1.1 1 0 0 1 1 1 0 PIN like domain DUF4174 PF13778.6 CQR58665.1 - 0.076 13.5 6.1 0.11 13.0 6.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4174) YMF19 PF02326.15 CQR58665.1 - 0.13 13.1 1.5 0.93 10.3 1.5 2.2 1 1 0 1 1 1 0 Plant ATP synthase F0 DUF4735 PF15882.5 CQR58665.1 - 0.21 11.0 2.9 0.26 10.7 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4735) CAF-1_p150 PF11600.8 CQR58665.1 - 0.31 10.7 14.5 0.58 9.8 14.5 1.5 1 1 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal TMPIT PF07851.13 CQR58665.1 - 0.44 9.8 7.0 0.57 9.4 7.0 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF763 PF05559.11 CQR58665.1 - 0.44 9.7 3.8 0.54 9.4 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF763) DivIVA PF05103.13 CQR58665.1 - 0.53 10.4 17.7 0.19 11.8 15.3 1.5 2 0 0 2 2 2 0 DivIVA protein TetR_C_23 PF17931.1 CQR58665.1 - 0.59 10.3 6.7 0.7 10.0 5.4 1.8 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain FliH PF02108.16 CQR58665.1 - 0.72 9.9 12.8 0.12 12.4 0.6 2.1 1 1 1 2 2 2 0 Flagellar assembly protein FliH NEMP PF10225.9 CQR58665.1 - 1.3 8.6 4.0 1.6 8.4 1.7 1.9 1 1 1 2 2 2 0 NEMP family HrpE PF06188.12 CQR58665.1 - 2.8 7.8 12.1 3.4 7.5 12.1 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E MAT1 PF06391.13 CQR58665.1 - 4.5 7.0 17.0 6 6.6 17.0 1.1 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 eIF3_N PF09440.10 CQR58665.1 - 7.9 6.9 13.7 1.3 9.5 6.7 2.1 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain ATP-synt_C PF00137.21 CQR58666.1 - 3.6e-16 59.2 9.0 4.3e-16 59.0 9.0 1.1 1 0 0 1 1 1 1 ATP synthase subunit C ATP-synt_A PF00119.20 CQR58667.1 - 2.9e-60 203.8 13.6 3.4e-60 203.6 13.6 1.0 1 0 0 1 1 1 1 ATP synthase A chain Gate PF07670.14 CQR58667.1 - 0.062 13.6 12.9 0.045 14.0 7.2 2.2 2 0 0 2 2 2 0 Nucleoside recognition ATP-synt_I PF03899.15 CQR58668.1 - 2.3e-10 40.7 5.7 2.3e-10 40.7 5.7 1.4 1 1 0 1 1 1 1 ATP synthase I chain DUF5423 PF17461.2 CQR58668.1 - 0.51 9.1 4.2 0.59 8.9 4.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5423) DUF3377 PF11857.8 CQR58668.1 - 0.65 10.0 2.5 2.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) ATPase_gene1 PF09527.10 CQR58669.1 - 2.1e-07 31.0 9.4 2.7e-07 30.6 9.4 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Vma12 PF11712.8 CQR58669.1 - 0.026 14.6 0.0 0.029 14.4 0.0 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF2165 PF09933.9 CQR58669.1 - 0.042 13.9 0.9 0.058 13.4 0.8 1.2 1 1 0 1 1 1 0 Predicted small integral membrane protein (DUF2165) Epimerase_2 PF02350.19 CQR58670.1 - 1.3e-111 372.9 0.0 1.6e-111 372.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyphos_transf PF04464.14 CQR58670.1 - 0.091 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase rve PF00665.26 CQR58670.1 - 0.12 12.6 0.0 0.88 9.8 0.0 2.3 3 0 0 3 3 3 0 Integrase core domain LPD23 PF18838.1 CQR58670.1 - 0.18 11.6 0.1 24 4.8 0.0 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 23 UPRTase PF14681.6 CQR58671.1 - 3.1e-74 248.9 0.1 3.4e-74 248.8 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 CQR58671.1 - 2e-07 30.6 0.0 3e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Fer4_12 PF13353.6 CQR58673.1 - 1.3e-05 25.4 0.1 4.1e-05 23.9 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 CQR58673.1 - 2.8e-05 24.6 0.0 5.5e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 CQR58673.1 - 5.8e-05 23.5 5.1 0.0075 16.8 0.2 3.1 2 0 0 2 2 2 2 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 CQR58673.1 - 0.0037 17.4 0.1 0.0037 17.4 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain HeH PF12949.7 CQR58673.1 - 0.076 12.7 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 HeH/LEM domain Peptidase_S8 PF00082.22 CQR58674.1 - 2.3e-16 59.9 0.6 9.7e-15 54.6 0.6 2.3 1 1 0 1 1 1 1 Subtilase family ABC_membrane PF00664.23 CQR58675.1 - 9.6e-45 153.4 24.6 1.4e-44 152.9 24.6 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR58675.1 - 6e-29 101.3 0.0 1.4e-28 100.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58675.1 - 2.1e-09 37.6 3.7 0.00014 21.8 0.1 2.5 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58675.1 - 9.3e-08 31.8 2.4 3e-05 23.6 0.0 2.7 1 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 CQR58675.1 - 0.00021 20.1 1.3 0.0093 14.7 0.3 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 CQR58675.1 - 0.001 18.8 7.7 0.0057 16.4 0.6 2.9 3 0 0 3 3 3 2 AAA ATPase domain ABC_ATPase PF09818.9 CQR58675.1 - 0.0064 15.3 0.1 0.09 11.6 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.6 CQR58675.1 - 0.0094 16.2 0.4 0.056 13.7 0.1 2.4 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 CQR58675.1 - 0.018 14.9 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 CQR58675.1 - 0.023 15.2 0.1 0.023 15.2 0.1 2.7 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 CQR58675.1 - 0.038 13.7 0.0 0.089 12.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 CQR58675.1 - 0.081 12.0 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SHMT PF00464.19 CQR58676.1 - 5.6e-172 571.8 0.1 7.4e-172 571.4 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 CQR58676.1 - 2e-07 30.6 0.0 2.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 CQR58676.1 - 0.00085 18.7 0.3 0.0013 18.1 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 CQR58676.1 - 0.0035 16.7 0.0 0.022 14.1 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 CQR58676.1 - 0.0075 15.3 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DUF1455 PF07306.11 CQR58676.1 - 0.12 12.3 0.0 0.41 10.6 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1455) DUF436 PF04260.12 CQR58677.1 - 1.1e-67 226.9 0.2 1.3e-67 226.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF436) LMWPc PF01451.21 CQR58678.1 - 3.8e-29 101.9 0.0 1.7e-26 93.3 0.0 2.0 1 1 0 2 2 2 2 Low molecular weight phosphotyrosine protein phosphatase PTS_IIB PF02302.17 CQR58678.1 - 0.00088 19.9 0.1 0.0052 17.5 0.0 2.1 1 1 1 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit NIL PF09383.10 CQR58678.1 - 0.091 12.6 0.0 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 NIL domain Mntp PF02659.15 CQR58679.1 - 1e-38 132.5 20.0 4.8e-37 127.1 11.4 2.0 1 1 1 2 2 2 2 Putative manganese efflux pump RseC_MucC PF04246.12 CQR58679.1 - 0.022 14.7 1.1 0.022 14.7 1.1 2.8 2 2 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Sua5_yciO_yrdC PF01300.18 CQR58680.1 - 4.4e-54 182.7 0.0 6.5e-54 182.1 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 CQR58680.1 - 2.1e-30 106.0 0.4 3.5e-30 105.3 0.4 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding DUF374 PF04028.13 CQR58680.1 - 0.087 12.4 0.5 2.8 7.6 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF374) Spore_II_R PF09551.10 CQR58681.1 - 4.5e-45 153.2 0.0 5.9e-45 152.8 0.0 1.2 1 0 0 1 1 1 1 Stage II sporulation protein R (spore_II_R) FTSW_RODA_SPOVE PF01098.19 CQR58682.1 - 4.6e-84 282.5 29.4 6.1e-84 282.1 29.4 1.0 1 0 0 1 1 1 1 Cell cycle protein FTSW_RODA_SPOVE PF01098.19 CQR58683.1 - 2.8e-82 276.6 25.9 3.4e-82 276.3 25.9 1.0 1 0 0 1 1 1 1 Cell cycle protein Collagen PF01391.18 CQR58684.1 - 0.19 11.5 14.2 0.41 10.4 14.2 1.6 1 1 0 1 1 1 0 Collagen triple helix repeat (20 copies) PrmC_N PF17827.1 CQR58685.1 - 1.4e-17 64.0 0.0 4.7e-17 62.3 0.0 1.9 2 0 0 2 2 2 1 PrmC N-terminal domain MTS PF05175.14 CQR58685.1 - 1.3e-12 47.5 0.0 2.3e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 CQR58685.1 - 1.2e-07 32.3 0.0 4.5e-07 30.5 0.0 2.0 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR58685.1 - 1.1e-05 26.0 0.0 6.6e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 CQR58685.1 - 1.9e-05 24.6 0.0 3.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR58685.1 - 8.3e-05 22.4 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58685.1 - 0.00012 22.7 0.0 0.00024 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 CQR58685.1 - 0.00024 20.6 0.0 0.00035 20.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_10 PF05971.12 CQR58685.1 - 0.11 11.8 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 RNA methyltransferase Methyltransf_4 PF02390.17 CQR58685.1 - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TrmK PF04816.12 CQR58685.1 - 0.15 11.6 0.0 0.2 11.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase PCRF PF03462.18 CQR58686.1 - 9.5e-72 240.9 0.3 9.5e-72 240.9 0.3 1.6 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 CQR58686.1 - 5.5e-38 129.5 1.4 5.5e-38 129.5 1.4 2.2 2 0 0 2 2 2 1 RF-1 domain CDK2AP PF09806.9 CQR58686.1 - 0.019 15.1 2.3 0.16 12.0 0.1 2.3 2 0 0 2 2 2 0 Cyclin-dependent kinase 2-associated protein ABC_tran_CTD PF16326.5 CQR58686.1 - 0.026 14.8 1.6 0.026 14.8 1.6 3.6 3 1 1 4 4 4 0 ABC transporter C-terminal domain YchF-GTPase_C PF06071.13 CQR58687.1 - 4.4e-40 135.8 0.0 1.1e-39 134.5 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 CQR58687.1 - 3e-25 88.5 0.0 6.9e-25 87.3 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR58687.1 - 5.5e-09 35.7 0.2 2.8e-08 33.5 0.0 2.3 2 1 0 2 2 2 1 Ferrous iron transport protein B SWIRM-assoc_1 PF16495.5 CQR58687.1 - 0.2 11.6 1.1 0.6 10.1 0.1 2.2 2 0 0 2 2 2 0 SWIRM-associated region 1 EF1_GNE PF00736.19 CQR58687.1 - 1.4 9.1 4.3 0.71 10.1 1.2 2.2 2 1 1 3 3 3 0 EF-1 guanine nucleotide exchange domain Acetyltransf_1 PF00583.25 CQR58688.1 - 2.4e-13 50.4 0.1 2.7e-13 50.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 CQR58688.1 - 5e-09 36.5 0.2 6e-09 36.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR58688.1 - 4.3e-08 33.1 0.1 5e-08 32.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR58688.1 - 1.5e-07 32.1 0.1 1.8e-07 31.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR58688.1 - 2.4e-07 31.1 0.7 3.3e-07 30.6 0.7 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR58688.1 - 5.6e-06 26.2 0.1 1e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_15 PF17013.5 CQR58688.1 - 0.0035 16.8 0.1 0.0046 16.4 0.1 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_16 PF05301.11 CQR58688.1 - 0.079 12.7 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Acetyltransf_CG PF14542.6 CQR58688.1 - 0.11 12.6 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase FMN_dh PF01070.18 CQR58689.1 - 8.9e-29 100.6 3.1 1.5e-18 66.9 2.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 CQR58689.1 - 3.3e-05 23.1 0.8 0.0027 16.8 0.9 2.4 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 CQR58689.1 - 0.00028 20.1 2.0 0.0034 16.6 1.4 2.3 2 1 0 2 2 2 1 Conserved region in glutamate synthase PLDc_2 PF13091.6 CQR58690.1 - 2e-25 89.2 0.1 3.4e-22 78.8 0.0 2.9 2 1 0 2 2 2 2 PLD-like domain Peripla_BP_4 PF13407.6 CQR58690.1 - 0.041 13.5 0.1 0.082 12.5 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein domain BD_b_sandwich PF18820.1 CQR58690.1 - 0.17 11.9 0.3 0.3 11.1 0.3 1.3 1 0 0 1 1 1 0 Bdellovibrio Beta-sandwich PLDc_2 PF13091.6 CQR58691.1 - 4e-41 140.0 0.0 3.7e-26 91.6 0.0 2.5 3 0 0 3 3 3 2 PLD-like domain PLDc PF00614.22 CQR58691.1 - 1.9e-14 53.2 1.3 3.1e-06 27.1 0.8 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.6 CQR58691.1 - 2.4e-10 40.1 2.2 2.4e-10 40.1 2.2 2.1 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal MFS_Mycoplasma PF07672.13 CQR58691.1 - 0.012 14.9 0.1 0.019 14.3 0.1 1.3 1 0 0 1 1 1 0 Mycoplasma MFS transporter TctB PF07331.11 CQR58691.1 - 0.25 11.6 9.3 0.49 10.7 9.3 1.5 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2207 PF09972.9 CQR58691.1 - 0.27 10.0 2.1 0.44 9.2 2.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TetR_N PF00440.23 CQR58692.1 - 3.6e-14 52.3 0.0 6e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF4121 PF13497.6 CQR58692.1 - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4121) ACR_tran PF00873.19 CQR58693.1 - 1.9e-212 707.8 29.5 4.3e-164 547.8 20.4 2.0 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family MMPL PF03176.15 CQR58693.1 - 8.2e-13 48.0 26.0 6.1e-08 32.0 12.6 2.4 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 CQR58693.1 - 7.5e-09 35.2 33.8 0.00023 20.6 12.7 2.5 2 0 0 2 2 2 2 Protein export membrane protein Methylase_S PF01420.19 CQR58693.1 - 0.013 15.7 0.7 2.3 8.4 0.0 2.8 3 0 0 3 3 3 0 Type I restriction modification DNA specificity domain Nitrate_red_del PF02613.15 CQR58694.1 - 1.4e-13 51.1 0.2 2.6e-13 50.2 0.2 1.7 1 1 0 1 1 1 1 Nitrate reductase delta subunit Mob_synth_C PF06463.13 CQR58695.1 - 2.1e-33 115.0 0.0 3.6e-32 111.0 0.0 2.1 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 CQR58695.1 - 1.4e-31 110.1 0.0 2.2e-31 109.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 CQR58695.1 - 3.5e-07 30.4 0.0 6.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 CQR58695.1 - 7.6e-07 29.5 0.0 1.3e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Sec63 PF02889.16 CQR58695.1 - 0.13 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Sec63 Brl domain HTH_26 PF13443.6 CQR58696.1 - 8.1e-05 23.0 0.1 0.00023 21.6 0.1 1.8 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 CQR58696.1 - 0.00069 19.6 0.0 0.0015 18.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR58696.1 - 0.0071 16.7 0.0 0.023 15.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain TPR_2 PF07719.17 CQR58696.1 - 0.029 14.5 8.5 4.1 7.7 0.1 4.5 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.6 CQR58696.1 - 0.036 14.6 2.2 2.9 8.5 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat AAA_lid_5 PF17865.1 CQR58696.1 - 0.089 12.9 0.2 0.34 11.0 0.2 1.9 1 0 0 1 1 1 0 Midasin AAA lid domain SpoOE-like PF09388.10 CQR58697.1 - 4.3e-13 48.9 0.0 5.3e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Spo0E like sporulation regulatory protein HTH_psq PF05225.16 CQR58699.1 - 0.0023 17.6 0.0 0.0076 16.0 0.0 1.9 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_3 PF01381.22 CQR58699.1 - 0.0035 17.4 0.0 0.01 15.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 CQR58699.1 - 0.011 16.2 0.0 0.028 14.9 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_16 PF12645.7 CQR58699.1 - 0.028 14.5 0.4 0.35 10.9 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 CQR58699.1 - 0.032 14.0 0.0 0.073 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_2 PF07719.17 CQR58699.1 - 0.039 14.1 5.2 3.9 7.8 0.0 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat CTK3 PF12243.8 CQR58699.1 - 0.089 12.8 0.4 0.19 11.7 0.4 1.5 1 0 0 1 1 1 0 CTD kinase subunit gamma CTK3 TPR_7 PF13176.6 CQR58699.1 - 0.13 12.4 4.0 8.7 6.6 0.1 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 CQR58699.1 - 0.24 12.1 4.2 36 5.3 0.1 4.2 3 0 0 3 3 3 0 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR58699.1 - 2.3 8.5 7.1 1.8 8.8 0.2 3.3 3 1 1 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 3 LysE PF01810.18 CQR58700.1 - 4.3e-24 85.0 12.4 5.7e-24 84.7 12.4 1.1 1 0 0 1 1 1 1 LysE type translocator DUF2678 PF10856.8 CQR58700.1 - 0.083 12.8 0.8 0.43 10.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) TPR_21 PF09976.9 CQR58700.1 - 0.11 12.1 1.4 0.52 10.0 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat-like domain Aminotran_1_2 PF00155.21 CQR58701.1 - 2.4e-24 86.2 0.0 3.1e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 CQR58701.1 - 4e-13 48.8 0.0 1.4e-12 47.0 0.0 2.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 CQR58701.1 - 1.4e-07 30.7 0.0 2.1e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase MarR_2 PF12802.7 CQR58701.1 - 4e-06 26.6 0.2 3.5e-05 23.6 0.1 2.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 CQR58701.1 - 2.5e-05 24.2 0.2 0.00017 21.5 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 CQR58701.1 - 0.001 19.0 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR58701.1 - 0.0023 17.9 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 CQR58701.1 - 0.0083 15.9 0.8 0.027 14.2 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 CQR58701.1 - 0.015 15.6 0.1 0.4 11.1 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 CQR58701.1 - 0.022 15.2 0.1 0.16 12.5 0.0 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR58701.1 - 0.029 13.9 0.1 0.071 12.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 CQR58701.1 - 0.045 13.8 1.6 0.06 13.4 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 CQR58701.1 - 0.054 13.6 2.8 1.2 9.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 CQR58701.1 - 0.082 12.7 0.3 0.47 10.3 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_CodY PF08222.11 CQR58701.1 - 0.083 12.5 0.2 0.17 11.5 0.2 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain TetR_C_27 PF17935.1 CQR58702.1 - 2.2e-23 82.3 3.1 4.1e-23 81.5 3.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR58702.1 - 5.5e-15 54.9 0.0 1.7e-14 53.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 CQR58702.1 - 1.7e-05 24.8 0.6 0.016 15.3 0.0 3.4 3 1 0 3 3 3 1 Helix-turn-helix domain of resolvase HTH_22 PF13309.6 CQR58702.1 - 0.0037 17.3 0.2 0.023 14.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_17 PF12728.7 CQR58702.1 - 0.0066 16.6 0.1 0.032 14.4 0.0 2.2 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_38 PF13936.6 CQR58702.1 - 0.0097 15.6 0.3 0.068 12.9 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR58702.1 - 0.011 15.1 0.0 0.033 13.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1_2 PF13022.6 CQR58702.1 - 0.014 15.6 0.1 0.039 14.1 0.0 1.8 2 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 CQR58702.1 - 0.015 15.1 0.1 0.097 12.5 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_40 PF14493.6 CQR58702.1 - 0.029 14.8 0.2 0.15 12.5 0.0 2.2 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_8 PF02954.19 CQR58702.1 - 0.042 13.6 0.0 0.15 11.8 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_5 PF01022.20 CQR58702.1 - 0.16 11.9 0.2 0.6 10.0 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family adh_short_C2 PF13561.6 CQR58703.1 - 1.8e-64 217.5 0.4 2.2e-64 217.2 0.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR58703.1 - 1.4e-52 178.0 1.6 1.7e-52 177.7 1.6 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR58703.1 - 2.6e-17 63.3 0.3 4e-17 62.7 0.3 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR58703.1 - 8.7e-05 22.1 0.2 0.00083 18.9 0.2 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 CQR58703.1 - 0.0008 19.7 0.0 0.052 13.8 0.0 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain THF_DHG_CYH_C PF02882.19 CQR58703.1 - 0.004 16.5 0.1 0.0094 15.3 0.1 1.7 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 CQR58703.1 - 0.021 14.7 0.2 0.032 14.1 0.2 1.3 1 0 0 1 1 1 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 CQR58703.1 - 0.069 12.2 0.3 0.12 11.4 0.1 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 CQR58703.1 - 0.076 12.4 0.2 0.15 11.4 0.2 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4364 PF14277.6 CQR58703.1 - 0.097 12.4 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) LytR_C PF13399.6 CQR58703.1 - 0.1 13.6 3.8 0.17 12.9 1.6 2.1 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Methyltransf_3 PF01596.17 CQR58703.1 - 0.13 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase ACT_4 PF13291.6 CQR58703.1 - 0.17 12.5 0.2 6.6 7.4 0.1 2.4 2 0 0 2 2 2 0 ACT domain HATPase_c PF02518.26 CQR58704.1 - 3.6e-29 101.5 0.0 6.7e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58704.1 - 7.6e-16 57.9 0.5 2.2e-15 56.4 0.5 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR58704.1 - 0.00023 21.0 0.0 0.00038 20.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR58704.1 - 0.00036 20.5 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 CQR58704.1 - 0.0081 16.0 0.0 0.02 14.8 0.0 1.6 2 0 0 2 2 2 1 GHKL domain Trep_Strep PF09605.10 CQR58704.1 - 0.043 13.8 0.2 0.043 13.8 0.2 1.9 2 0 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) MLTD_N PF06474.12 CQR58704.1 - 0.07 13.3 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 MltD lipid attachment motif HAMP PF00672.25 CQR58704.1 - 0.096 13.1 0.0 0.22 11.9 0.0 1.6 1 0 0 1 1 1 0 HAMP domain Response_reg PF00072.24 CQR58705.1 - 3.1e-22 78.8 0.0 4.3e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58705.1 - 3.8e-22 78.1 0.0 7.3e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Glutaredoxin PF00462.24 CQR58705.1 - 0.036 14.3 0.0 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 Glutaredoxin ABC_membrane PF00664.23 CQR58706.1 - 3.2e-42 145.1 15.0 4.2e-42 144.7 15.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR58706.1 - 5.9e-32 111.0 0.0 1.2e-31 110.0 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR58706.1 - 1.5e-06 27.8 1.2 0.00022 20.8 0.1 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR58706.1 - 0.00052 19.9 0.1 0.0088 15.9 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_membrane_3 PF13748.6 CQR58706.1 - 0.0026 17.0 0.1 0.0026 17.0 0.1 1.8 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_22 PF13401.6 CQR58706.1 - 0.0065 16.8 0.4 0.058 13.7 0.4 2.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR58706.1 - 0.016 14.1 0.0 2.7 6.7 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.6 CQR58706.1 - 0.031 14.8 0.2 0.095 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR58706.1 - 0.032 13.9 0.1 0.086 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR58706.1 - 0.039 13.9 0.0 0.096 12.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 CQR58706.1 - 0.039 14.4 0.4 2.6 8.5 0.1 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 CQR58706.1 - 0.053 13.8 0.3 0.6 10.4 0.3 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 CQR58706.1 - 0.067 12.9 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR58706.1 - 0.079 13.3 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Arteri_Gl PF00951.18 CQR58706.1 - 2.9 7.6 7.8 0.13 12.0 1.2 2.1 2 0 0 2 2 2 0 Arterivirus GL envelope glycoprotein NTP_transf_3 PF12804.7 CQR58707.1 - 1.3e-30 106.9 0.4 1.7e-30 106.5 0.4 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain His_kinase PF06580.13 CQR58708.1 - 9.1e-24 83.6 2.3 2.8e-23 82.0 2.3 1.9 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 CQR58708.1 - 6.6e-13 49.0 1.6 1.4e-12 48.0 1.6 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR58708.1 - 1e-06 29.2 0.0 2.5e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR58708.1 - 2.2e-06 27.9 0.0 4.2e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 CQR58708.1 - 0.037 13.3 0.0 0.076 12.3 0.0 1.5 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain HATPase_c_2 PF13581.6 CQR58708.1 - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain FtsX PF02687.21 CQR58708.1 - 0.45 11.0 2.6 14 6.2 0.3 2.6 2 0 0 2 2 2 0 FtsX-like permease family Response_reg PF00072.24 CQR58709.1 - 7.4e-27 93.7 0.0 2.5e-26 92.0 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR58709.1 - 6.7e-21 74.3 0.0 2.3e-20 72.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58709.1 - 3.3e-16 58.9 0.7 1.4e-08 34.6 0.1 2.9 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family GGDEF_2 PF17853.1 CQR58709.1 - 4.3e-14 52.8 0.0 8.2e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 GGDEF-like domain HTH_23 PF13384.6 CQR58709.1 - 0.0091 15.8 0.0 0.037 13.8 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 CQR58709.1 - 0.05 13.2 0.0 0.18 11.4 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4177 PF13783.6 CQR58709.1 - 0.1 12.9 0.0 3.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4177) Rrf2 PF02082.20 CQR58709.1 - 0.1 12.9 0.0 0.37 11.2 0.0 2.0 1 1 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.6 CQR58709.1 - 0.14 12.3 0.0 0.45 10.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain BPD_transp_1 PF00528.22 CQR58710.1 - 5.8e-17 62.0 13.3 5.8e-17 62.0 13.3 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Rv2175c_C PF18367.1 CQR58710.1 - 0.18 11.9 0.1 0.67 10.1 0.1 2.0 2 0 0 2 2 2 0 Rv2175c C-terminal domain of unknown function BPD_transp_1 PF00528.22 CQR58711.1 - 2.8e-18 66.3 20.2 2.8e-18 66.3 20.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component WTF PF03303.13 CQR58711.1 - 0.77 9.4 7.6 0.86 9.3 6.5 1.6 1 1 0 1 1 1 0 WTF protein SBP_bac_1 PF01547.25 CQR58712.1 - 4.5e-39 135.2 6.6 7e-39 134.6 6.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58712.1 - 1.4e-30 107.1 7.6 1.9e-30 106.7 7.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58712.1 - 2.7e-05 23.7 1.8 0.013 14.9 0.1 2.6 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein LPAM_1 PF08139.12 CQR58712.1 - 0.31 11.6 1.3 0.59 10.7 1.3 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Glyco_hydro_43 PF04616.14 CQR58713.1 - 1.1e-66 225.0 1.4 1.5e-66 224.7 1.4 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 GH43_C2 PF17851.1 CQR58713.1 - 2.2e-28 99.3 0.0 3.2e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain MFS_1_like PF12832.7 CQR58714.1 - 3.8e-43 147.8 35.5 5e-43 147.4 35.5 1.1 1 0 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 CQR58714.1 - 9.2e-22 77.4 53.3 1.8e-16 60.0 28.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.16 CQR58714.1 - 1.3e-12 47.4 31.8 2.7e-12 46.4 31.8 1.4 1 1 0 1 1 1 1 Nucleoside H+ symporter LacY_symp PF01306.19 CQR58714.1 - 1.9e-06 26.9 31.2 4e-06 25.9 31.2 1.5 1 1 0 1 1 1 1 LacY proton/sugar symporter MFS_2 PF13347.6 CQR58714.1 - 0.13 10.8 36.3 0.037 12.6 30.7 2.4 1 1 1 2 2 2 0 MFS/sugar transport protein CReP_N PF10472.9 CQR58715.1 - 1.8 7.4 4.2 13 4.6 0.1 2.6 1 1 2 3 3 3 0 eIF2-alpha phosphatase phosphorylation constitutive repressor tRNA-synt_1c PF00749.21 CQR58716.1 - 3.5e-106 354.6 0.0 5.2e-106 354.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 CQR58716.1 - 3.3e-55 186.6 0.0 6.2e-55 185.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2164 PF09932.9 CQR58717.1 - 1.4e-25 89.1 0.1 1.6e-25 88.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2164) Acetyltransf_3 PF13302.7 CQR58718.1 - 1.9e-23 83.7 0.1 2.4e-23 83.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR58718.1 - 1.4e-06 28.6 0.2 1.7e-06 28.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 CQR58718.1 - 0.00013 21.7 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR58718.1 - 0.00084 19.5 0.0 0.00099 19.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MOSC PF03473.17 CQR58719.1 - 1.4e-21 76.8 0.0 2e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 MOSC domain 3-alpha PF03475.14 CQR58719.1 - 1.9e-05 24.4 0.0 3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 3-alpha domain Acetyltransf_1 PF00583.25 CQR58720.1 - 4e-18 65.8 0.0 4.8e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR58720.1 - 4.8e-14 52.5 0.0 6.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR58720.1 - 3.5e-13 49.6 0.0 4.5e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR58720.1 - 3.1e-10 40.4 0.0 4e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR58720.1 - 4.3e-07 30.7 0.0 5.4e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR58720.1 - 7.1e-07 29.1 0.0 1.1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 CQR58720.1 - 0.012 15.7 0.0 0.12 12.4 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 CQR58720.1 - 0.048 13.0 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_CG PF14542.6 CQR58720.1 - 0.066 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase XdhC_CoxI PF02625.16 CQR58720.1 - 0.092 12.9 0.1 0.24 11.6 0.1 1.7 2 0 0 2 2 2 0 XdhC and CoxI family MFS_1 PF07690.16 CQR58721.1 - 4.8e-33 114.6 75.4 1.5e-31 109.6 42.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 CQR58721.1 - 6e-06 24.8 12.5 0.014 13.7 1.8 3.3 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 CQR58721.1 - 0.00044 19.2 26.0 0.00079 18.4 10.5 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 CQR58721.1 - 0.0015 17.0 6.8 0.0015 17.0 6.8 2.1 2 0 0 2 2 2 1 Transmembrane secretion effector Gemini_mov PF01708.16 CQR58721.1 - 0.15 11.9 1.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Geminivirus putative movement protein Molybdopterin PF00384.22 CQR58722.1 - 6e-60 203.4 0.0 9e-60 202.8 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 CQR58722.1 - 6.9e-21 74.4 0.0 1.7e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 CQR58722.1 - 2.7e-15 56.1 0.7 5.2e-15 55.2 0.7 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Form_Nir_trans PF01226.17 CQR58723.1 - 4.8e-75 251.9 26.9 5.6e-75 251.7 26.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Vps62 PF06101.11 CQR58723.1 - 0.054 11.8 0.0 0.077 11.3 0.0 1.2 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 62 FixP_N PF14715.6 CQR58723.1 - 0.11 12.3 3.8 9.1 6.1 3.6 2.7 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP Bac_export_2 PF01312.19 CQR58723.1 - 0.32 10.2 3.5 0.5 9.5 3.5 1.3 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family Pyr_redox_2 PF07992.14 CQR58724.1 - 2.8e-62 210.6 0.1 3.5e-62 210.3 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR58724.1 - 3.9e-20 72.2 2.6 9.7e-19 67.7 0.4 3.2 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 CQR58724.1 - 6.3e-16 58.6 0.0 4e-15 56.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 CQR58724.1 - 8.4e-10 38.4 0.1 4.7e-09 35.9 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR58724.1 - 2.8e-07 30.5 0.3 0.0098 15.5 0.0 3.5 3 1 1 4 4 4 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 CQR58724.1 - 3.7e-06 26.3 0.0 2.1e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 CQR58724.1 - 0.00022 20.0 0.1 2.1 6.9 0.0 3.5 4 0 0 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.18 CQR58724.1 - 0.0008 19.3 0.1 0.002 18.1 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 CQR58724.1 - 0.00089 18.9 0.4 0.00089 18.9 0.4 2.3 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 CQR58724.1 - 0.0051 17.1 0.5 0.019 15.2 0.1 2.2 3 0 0 3 3 3 1 TrkA-N domain Amino_oxidase PF01593.24 CQR58724.1 - 0.009 15.3 0.0 0.17 11.1 0.0 2.1 1 1 1 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 CQR58724.1 - 0.01 15.8 0.1 2.5 8.1 0.0 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 CQR58724.1 - 0.033 13.5 0.1 3 7.1 0.0 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 CQR58724.1 - 0.043 14.2 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_8 PF13450.6 CQR58724.1 - 0.074 13.3 0.0 3.7 7.8 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 CQR58724.1 - 0.098 12.8 0.2 1.5 9.0 0.0 2.7 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 CQR58724.1 - 0.1 13.2 0.1 2.5 8.7 0.1 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GIDA PF01134.22 CQR58724.1 - 0.41 9.7 5.7 8.7 5.3 0.4 3.7 3 1 1 4 4 4 0 Glucose inhibited division protein A FTHFS PF01268.19 CQR58725.1 - 5.1e-240 797.4 0.1 5.7e-240 797.2 0.1 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase CbiA PF01656.23 CQR58725.1 - 0.017 15.2 0.0 0.57 10.2 0.3 2.4 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTP_transf_3 PF12804.7 CQR58725.1 - 0.11 12.8 0.4 0.54 10.6 0.0 2.2 3 0 0 3 3 3 0 MobA-like NTP transferase domain GSHPx PF00255.19 CQR58726.1 - 6.1e-40 135.2 0.0 7.5e-40 134.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 CQR58726.1 - 0.00011 22.1 0.0 0.00022 21.2 0.0 1.7 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 CQR58726.1 - 0.064 13.0 0.0 0.17 11.6 0.0 1.7 1 1 0 1 1 1 0 Redoxin Bac_luciferase PF00296.20 CQR58727.1 - 7.8e-33 114.2 5.7 1.2e-32 113.7 5.7 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3243 PF11588.8 CQR58728.1 - 1.7e-29 101.9 0.6 2.3e-29 101.5 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3243) Pilus_CpaD PF09476.10 CQR58728.1 - 0.019 14.7 0.1 0.025 14.3 0.1 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Homeodomain PF00046.29 CQR58728.1 - 0.045 13.6 0.4 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 Homeodomain EspB_PE PF18625.1 CQR58728.1 - 0.18 12.3 2.4 9.2 6.8 0.1 2.4 1 1 0 2 2 2 0 ESX-1 secreted protein B PE domain FAD_oxidored PF12831.7 CQR58729.1 - 5.3e-107 358.9 0.0 6.1e-107 358.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR58729.1 - 6.3e-08 32.7 2.1 3.7e-06 27.1 0.2 3.1 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 CQR58729.1 - 1.1e-05 24.7 2.6 1.9e-05 23.9 2.6 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 CQR58729.1 - 2.4e-05 23.6 0.2 3.3e-05 23.1 0.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 CQR58729.1 - 3.8e-05 23.1 0.0 5.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR58729.1 - 0.0083 15.4 0.1 0.028 13.7 0.0 1.8 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 CQR58729.1 - 0.011 14.5 1.2 0.015 14.0 1.2 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox PF00070.27 CQR58729.1 - 0.034 14.7 0.2 1.8 9.2 0.7 2.5 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR58729.1 - 0.056 13.0 9.2 0.054 13.1 6.0 2.4 2 1 1 3 3 3 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 CQR58729.1 - 0.075 12.3 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 CQR58729.1 - 0.13 11.6 1.3 0.23 10.7 1.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain RVT_1 PF00078.27 CQR58730.1 - 4.8e-44 150.5 0.0 9.9e-44 149.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.11 CQR58730.1 - 3.2e-11 43.1 12.4 5.5e-11 42.4 9.4 2.8 2 1 0 2 2 2 1 Group II intron, maturase-specific domain RVT_N PF13655.6 CQR58730.1 - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase VanY PF02557.17 CQR58731.1 - 1.4e-43 147.9 0.0 1.9e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase SurA_N_3 PF13624.6 CQR58731.1 - 0.064 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 SurA N-terminal domain DUF1244 PF06844.11 CQR58731.1 - 0.096 12.9 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1244) DEAD PF00270.29 CQR58732.1 - 6.5e-49 166.1 0.0 1.1e-48 165.4 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 CQR58732.1 - 1.7e-31 108.9 0.0 5.3e-30 104.0 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 CQR58732.1 - 1.2e-05 25.3 0.0 1.9e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF1604 PF07713.13 CQR58732.1 - 0.13 12.1 4.9 0.32 10.8 4.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1604) ABC1 PF03109.16 CQR58733.1 - 2.1e-35 121.5 0.0 3.9e-35 120.6 0.0 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 CQR58733.1 - 2.5e-08 34.2 0.2 5.9e-08 32.9 0.2 1.7 1 0 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 CQR58733.1 - 2.5e-08 33.6 0.1 7.9e-08 32.0 0.1 1.8 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 CQR58733.1 - 0.00073 19.2 0.0 0.0015 18.2 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Phasin PF05597.11 CQR58734.1 - 6.1e-07 29.5 5.0 3.2e-06 27.2 5.0 1.9 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) PHA_synth_III_E PF09712.10 CQR58734.1 - 0.009 15.1 0.4 0.016 14.3 0.2 1.5 2 0 0 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Fzo_mitofusin PF04799.13 CQR58734.1 - 0.063 12.8 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3349 PF11829.8 CQR58734.1 - 0.12 13.2 1.5 0.6 10.9 1.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3349) ABC_tran_CTD PF16326.5 CQR58734.1 - 0.24 11.7 0.3 0.24 11.7 0.3 1.9 2 1 0 2 2 2 0 ABC transporter C-terminal domain ThuA PF06283.11 CQR58735.1 - 2e-31 109.9 0.0 2.4e-31 109.6 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation HEM4 PF02602.15 CQR58736.1 - 4.2e-42 144.1 0.1 5e-42 143.8 0.1 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Mo25 PF08569.11 CQR58736.1 - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Mo25-like MGS PF02142.22 CQR58736.1 - 0.19 12.0 0.0 0.81 9.9 0.0 2.0 1 1 1 2 2 2 0 MGS-like domain MCPsignal PF00015.21 CQR58737.1 - 4e-40 137.4 47.0 1.8e-38 132.0 19.7 4.1 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 CQR58737.1 - 9.2e-20 71.5 0.3 9.2e-20 71.5 0.3 3.7 3 1 0 3 3 3 1 Cache domain HAMP PF00672.25 CQR58737.1 - 4.9e-12 46.0 2.4 2.2e-11 44.0 0.1 3.1 3 0 0 3 3 2 1 HAMP domain Cache_3-Cache_2 PF17201.4 CQR58737.1 - 5.9e-09 35.6 1.6 8.6e-08 31.8 0.0 3.0 2 1 0 2 2 2 1 Cache 3/Cache 2 fusion domain DUF948 PF06103.11 CQR58737.1 - 7.8e-05 22.9 27.0 0.092 13.0 1.3 6.3 3 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 CQR58737.1 - 9.8e-05 22.4 17.9 0.051 13.6 1.0 4.3 3 2 3 6 6 6 4 Protein of unknown function (DUF1664) dCache_2 PF08269.11 CQR58737.1 - 0.0044 16.2 2.5 0.0057 15.9 0.1 2.4 2 1 0 2 2 2 1 Cache domain BLOC1_2 PF10046.9 CQR58737.1 - 0.0048 17.2 12.5 0.33 11.3 0.1 4.8 3 2 2 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 sCache_2 PF17200.4 CQR58737.1 - 0.0086 15.9 3.1 0.18 11.6 0.0 3.7 3 0 0 3 3 3 1 Single Cache domain 2 COG2 PF06148.11 CQR58737.1 - 0.023 14.8 11.7 0.36 10.9 0.1 5.0 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Serine_rich PF08824.10 CQR58737.1 - 0.026 14.5 4.0 3.3 7.7 0.0 3.5 3 1 1 4 4 4 0 Serine rich protein interaction domain H-kinase_dim PF02895.14 CQR58737.1 - 0.042 14.3 0.3 0.042 14.3 0.3 3.6 3 1 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain TRIQK PF15168.6 CQR58737.1 - 0.1 12.5 0.2 0.34 10.8 0.2 1.9 1 0 0 1 1 1 0 Triple QxxK/R motif-containing protein family Laminin_I PF06008.14 CQR58737.1 - 0.12 12.1 19.6 1.9 8.1 0.3 3.6 1 1 1 3 3 3 0 Laminin Domain I Laminin_II PF06009.12 CQR58737.1 - 0.18 11.8 23.4 0.33 11.0 1.6 5.1 3 2 3 6 6 6 0 Laminin Domain II PLU-1 PF08429.11 CQR58737.1 - 0.18 10.9 1.4 0.63 9.1 0.8 2.0 2 0 0 2 2 2 0 PLU-1-like protein FlgN PF05130.12 CQR58737.1 - 0.21 12.1 10.6 5.1 7.6 3.4 3.6 2 2 1 3 3 3 0 FlgN protein Mod_r PF07200.13 CQR58737.1 - 0.29 11.2 5.8 3 7.9 1.4 3.5 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Dor1 PF04124.12 CQR58737.1 - 0.33 9.6 2.3 2.1 6.9 0.8 2.7 2 2 0 2 2 2 0 Dor1-like family NPV_P10 PF05531.12 CQR58737.1 - 0.56 10.7 7.0 19 5.8 0.1 5.2 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 CQR58737.1 - 1 8.2 12.7 3 6.6 1.8 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein AIP3 PF03915.13 CQR58737.1 - 2 7.4 6.4 6.1 5.8 1.6 2.4 2 0 0 2 2 2 0 Actin interacting protein 3 Flagellar_rod PF05149.12 CQR58737.1 - 2.1 7.7 5.7 20 4.5 0.0 3.2 2 1 1 3 3 3 0 Paraflagellar rod protein AAA_13 PF13166.6 CQR58737.1 - 2.7 6.5 11.0 35 2.9 11.0 2.2 1 1 0 1 1 1 0 AAA domain DUF4795 PF16043.5 CQR58737.1 - 3.2 7.3 4.9 23 4.5 0.1 3.4 2 2 0 2 2 2 0 Domain of unknown function (DUF4795) EAP30 PF04157.16 CQR58737.1 - 9.2 5.5 12.3 1.8 7.8 0.3 3.3 3 1 0 3 3 3 0 EAP30/Vps36 family Fez1 PF06818.15 CQR58737.1 - 9.4 6.6 9.5 3.3 8.1 3.6 2.4 3 0 0 3 3 2 0 Fez1 FUR PF01475.19 CQR58738.1 - 2.3e-25 89.1 0.4 2.7e-25 88.8 0.4 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.16 CQR58738.1 - 2.2e-06 28.0 0.1 2.7e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 CQR58738.1 - 0.033 14.1 0.1 1.3 9.0 0.1 2.4 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 CQR58738.1 - 0.058 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TF_Zn_Ribbon PF08271.12 CQR58738.1 - 0.073 12.6 2.4 2.5 7.7 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RRN7 PF11781.8 CQR58738.1 - 0.21 11.3 3.1 5 6.9 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-trcl PF13451.6 CQR58738.1 - 0.42 10.6 2.4 4.3 7.3 2.4 2.1 1 1 0 1 1 1 0 Probable zinc-ribbon domain DUF2387 PF09526.10 CQR58738.1 - 3.6 7.8 6.6 6.6 7.0 0.3 2.5 2 1 1 3 3 3 0 Probable metal-binding protein (DUF2387) DAO PF01266.24 CQR58739.1 - 8.8e-37 127.5 0.7 1.2e-36 127.0 0.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 CQR58739.1 - 3.1e-13 49.5 0.3 2.1e-11 43.6 0.2 2.4 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain NAD_binding_8 PF13450.6 CQR58739.1 - 1e-08 35.3 0.4 3e-08 33.8 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 CQR58739.1 - 5.1e-06 25.9 0.0 1.3e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 CQR58739.1 - 3.4e-05 23.1 0.1 5.1e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 CQR58739.1 - 0.00011 21.6 1.1 0.00018 20.9 0.9 1.5 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 CQR58739.1 - 0.00017 20.9 0.1 0.00028 20.2 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 CQR58739.1 - 0.00034 21.1 0.3 0.001 19.6 0.3 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 CQR58739.1 - 0.0054 16.1 0.1 0.0093 15.3 0.1 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 CQR58739.1 - 0.0065 15.9 0.1 0.0092 15.4 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 CQR58739.1 - 0.014 14.1 0.3 0.024 13.3 0.3 1.3 1 0 0 1 1 1 0 HI0933-like protein 3HCDH_N PF02737.18 CQR58739.1 - 0.018 14.9 0.1 0.03 14.2 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 CQR58739.1 - 0.019 13.9 1.4 0.026 13.4 1.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.22 CQR58739.1 - 0.02 14.0 1.1 0.041 13.0 1.1 1.5 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 CQR58739.1 - 0.039 13.2 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 CQR58739.1 - 0.088 11.8 0.1 0.15 11.1 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 CQR58739.1 - 0.096 12.0 0.1 2 7.7 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 CQR58739.1 - 0.1 12.3 0.8 0.24 11.1 0.8 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 CQR58740.1 - 2.5e-59 200.0 2.4 3e-59 199.8 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR58740.1 - 2.1e-42 145.3 4.6 3.3e-42 144.7 4.6 1.2 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR58740.1 - 6.5e-15 55.5 1.4 9.2e-15 55.0 1.4 1.1 1 0 0 1 1 1 1 KR domain ApbA PF02558.16 CQR58740.1 - 0.0011 18.6 0.4 0.0022 17.6 0.2 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 CQR58740.1 - 0.0026 17.3 0.7 0.0037 16.8 0.2 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 CQR58740.1 - 0.02 14.2 0.2 0.045 13.1 0.0 1.7 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.17 CQR58740.1 - 0.044 12.9 1.0 0.12 11.4 0.2 2.0 2 1 1 3 3 3 0 RmlD substrate binding domain NAD_Gly3P_dh_N PF01210.23 CQR58740.1 - 0.055 13.5 0.3 0.12 12.3 0.1 1.6 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 CQR58740.1 - 0.11 12.5 0.7 0.23 11.5 0.4 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 CQR58740.1 - 0.12 11.8 0.8 0.23 10.8 0.2 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABM PF03992.16 CQR58741.1 - 2.9e-18 65.7 0.1 3.5e-18 65.5 0.1 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DNA_gyraseA_C PF03989.13 CQR58741.1 - 0.055 13.0 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 DNA gyrase C-terminal domain, beta-propeller MMPL PF03176.15 CQR58742.1 - 1.3e-105 353.1 12.5 4.1e-55 187.0 1.9 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 CQR58742.1 - 0.0012 18.8 17.8 0.0037 17.1 6.7 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ABC_membrane PF00664.23 CQR58743.1 - 3.3e-60 204.1 15.0 4.2e-60 203.7 15.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR58743.1 - 2.8e-33 115.3 0.0 5.3e-33 114.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 CQR58743.1 - 1.6e-06 28.6 0.0 7.5e-06 26.4 0.0 2.2 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR58743.1 - 8.6e-06 26.2 0.0 0.0051 17.2 0.0 3.2 4 1 0 4 4 3 1 AAA ATPase domain ABC_membrane_3 PF13748.6 CQR58743.1 - 4.5e-05 22.8 4.3 0.00026 20.3 0.2 2.8 3 0 0 3 3 3 1 ABC transporter transmembrane region AAA_30 PF13604.6 CQR58743.1 - 6.4e-05 22.8 0.2 0.00023 21.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 CQR58743.1 - 9.1e-05 22.7 0.6 0.0016 18.7 0.6 2.6 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 CQR58743.1 - 0.00024 21.0 0.5 0.22 11.3 0.1 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 CQR58743.1 - 0.00039 20.4 0.0 0.00096 19.1 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 CQR58743.1 - 0.0007 20.2 0.1 0.0017 18.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR58743.1 - 0.00097 18.6 0.4 0.19 11.2 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 CQR58743.1 - 0.0034 17.4 0.2 0.014 15.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 CQR58743.1 - 0.0068 16.3 0.1 0.019 14.9 0.1 1.7 1 0 0 1 1 1 1 NTPase AAA_29 PF13555.6 CQR58743.1 - 0.0083 15.9 0.0 0.026 14.3 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 CQR58743.1 - 0.013 15.6 0.5 2.2 8.3 0.0 3.2 3 0 0 3 3 3 0 AAA domain T2SSE PF00437.20 CQR58743.1 - 0.013 14.5 0.0 0.028 13.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 CQR58743.1 - 0.023 15.3 0.0 0.047 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_membrane_2 PF06472.15 CQR58743.1 - 0.028 13.8 7.1 0.092 12.1 7.1 1.8 1 1 0 1 1 1 0 ABC transporter transmembrane region 2 Rad17 PF03215.15 CQR58743.1 - 0.028 14.3 0.4 0.12 12.2 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_19 PF13245.6 CQR58743.1 - 0.03 14.6 0.1 0.097 13.0 0.1 1.9 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 CQR58743.1 - 0.033 13.8 0.6 0.081 12.5 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 CQR58743.1 - 0.064 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 CQR58743.1 - 0.067 12.9 0.1 0.38 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 CQR58743.1 - 0.068 12.1 0.4 0.35 9.7 0.1 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 CQR58743.1 - 0.073 12.7 0.7 0.28 10.8 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 CQR58743.1 - 0.11 12.8 0.4 0.3 11.3 0.2 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 CQR58743.1 - 0.11 12.3 0.1 8.6 6.1 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF87 PF01935.17 CQR58743.1 - 0.12 12.5 0.4 0.34 11.0 0.1 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 CQR58743.1 - 0.14 12.1 0.4 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 CQR58743.1 - 0.19 11.9 0.1 0.7 10.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF983 PF06170.12 CQR58743.1 - 8.5 6.9 9.3 2.5 8.6 5.5 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF983) ABC_membrane PF00664.23 CQR58744.1 - 1.5e-47 162.5 14.3 2.1e-47 162.1 14.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CQR58744.1 - 5e-32 111.3 0.0 1.1e-31 110.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CQR58744.1 - 1.3e-06 28.0 2.7 0.00022 20.7 2.7 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR58744.1 - 0.0049 16.6 1.1 0.0049 16.6 1.1 2.0 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR58744.1 - 0.0066 16.3 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR58744.1 - 0.0076 16.8 0.1 0.019 15.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 CQR58744.1 - 0.009 15.3 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_15 PF13175.6 CQR58744.1 - 0.0092 15.7 0.1 0.025 14.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 CQR58744.1 - 0.015 14.1 0.2 0.51 9.1 0.0 2.5 2 1 1 3 3 3 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 CQR58744.1 - 0.016 15.0 0.2 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR58744.1 - 0.025 14.3 0.9 0.1 12.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain 7tm_7 PF08395.12 CQR58744.1 - 0.035 13.3 6.6 0.007 15.6 3.1 1.6 2 0 0 2 2 2 0 7tm Chemosensory receptor AAA_22 PF13401.6 CQR58744.1 - 0.04 14.2 0.1 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 CQR58744.1 - 0.056 13.4 0.1 0.16 11.9 0.1 1.8 1 1 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 CQR58744.1 - 0.071 13.5 0.1 0.15 12.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 CQR58744.1 - 0.087 12.9 0.3 0.26 11.4 0.3 1.8 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_25 PF13481.6 CQR58744.1 - 0.11 12.0 0.7 16 5.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF872 PF05915.12 CQR58744.1 - 4.1 7.6 7.1 3.1 8.0 0.7 2.7 2 1 1 3 3 2 0 Eukaryotic protein of unknown function (DUF872) MarR PF01047.22 CQR58745.1 - 6.3e-12 45.3 0.1 2.8e-11 43.1 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR58745.1 - 4.4e-11 42.5 0.1 1.5e-10 40.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 CQR58745.1 - 4e-06 27.2 0.3 1.1e-05 25.8 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 CQR58745.1 - 5.7e-06 26.0 0.0 1.4e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR58745.1 - 0.00012 22.0 0.3 0.00029 20.7 0.1 1.8 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 CQR58745.1 - 0.00022 21.4 0.0 0.0006 20.0 0.0 1.8 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 CQR58745.1 - 0.0004 19.9 0.0 0.0013 18.3 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 CQR58745.1 - 0.002 17.8 0.0 0.0062 16.3 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 CQR58745.1 - 0.0024 17.9 0.0 0.0057 16.7 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 CQR58745.1 - 0.011 15.4 0.1 0.023 14.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_1 PF00126.27 CQR58745.1 - 0.011 15.6 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.19 CQR58745.1 - 0.014 15.3 0.1 0.031 14.2 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 CQR58745.1 - 0.029 14.7 0.0 0.057 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4_2 PF08281.12 CQR58745.1 - 0.046 13.4 0.0 0.15 11.7 0.0 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 RPA_C PF08784.11 CQR58745.1 - 0.053 14.2 0.0 0.086 13.5 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_10 PF04967.12 CQR58745.1 - 0.058 13.2 0.0 5.9 6.8 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain HTH_28 PF13518.6 CQR58745.1 - 0.065 13.4 0.0 0.13 12.4 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 CQR58745.1 - 0.097 12.7 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix DprA_WH PF17782.1 CQR58745.1 - 0.11 12.7 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_5 PF01022.20 CQR58745.1 - 0.13 12.1 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LPAM_1 PF08139.12 CQR58746.1 - 0.28 11.7 1.8 0.28 11.7 1.8 1.5 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site TPR_8 PF13181.6 CQR58747.1 - 0.0011 19.1 3.4 0.19 12.0 0.5 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat HTH_26 PF13443.6 CQR58747.1 - 0.0078 16.6 0.0 0.033 14.6 0.0 2.1 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain TPR_12 PF13424.6 CQR58747.1 - 0.015 15.6 5.9 3.7 7.9 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58747.1 - 0.043 13.6 2.9 0.47 10.4 0.4 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 CQR58747.1 - 2.7 8.3 9.0 3.7 7.9 0.6 4.2 5 0 0 5 5 5 0 Tetratricopeptide repeat SpoOE-like PF09388.10 CQR58748.1 - 2e-10 40.4 0.8 3.4e-10 39.7 0.4 1.7 1 1 1 2 2 2 1 Spo0E like sporulation regulatory protein PRONE PF03759.13 CQR58748.1 - 0.0052 15.7 0.4 0.0056 15.5 0.4 1.0 1 0 0 1 1 1 1 PRONE (Plant-specific Rop nucleotide exchanger) LysR_substrate PF03466.20 CQR58749.1 - 1.2e-51 175.0 0.2 1.4e-51 174.8 0.2 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR58749.1 - 5.2e-23 80.8 0.0 9.9e-23 79.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LrgA PF03788.14 CQR58750.1 - 4.6e-29 100.2 9.4 6.3e-29 99.8 9.4 1.2 1 0 0 1 1 1 1 LrgA family LrgB PF04172.16 CQR58751.1 - 2.4e-74 249.5 19.3 2.8e-74 249.3 19.3 1.0 1 0 0 1 1 1 1 LrgB-like family DUF1614 PF07758.11 CQR58751.1 - 0.0024 17.9 5.3 0.0024 17.9 5.3 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1614) LrgA PF03788.14 CQR58751.1 - 6.1 6.9 13.4 0.11 12.5 4.0 2.8 3 1 0 3 3 3 0 LrgA family GFO_IDH_MocA PF01408.22 CQR58752.1 - 1.8e-20 74.0 0.0 3e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR58752.1 - 2.6e-07 30.6 0.0 5.3e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 CQR58752.1 - 1.3e-05 24.9 0.0 2.8e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Putative oxidoreductase C terminal domain Semialdhyde_dh PF01118.24 CQR58752.1 - 0.0026 18.2 0.0 0.0051 17.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Helicase_C_2 PF13307.6 CQR58753.1 - 2.7e-36 125.3 0.0 6.2e-36 124.1 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 CQR58753.1 - 1.1e-14 54.4 0.1 2e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 HBB PF06777.11 CQR58753.1 - 3.6e-06 26.8 0.0 6.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 CQR58753.1 - 7.2e-06 25.9 0.4 0.0026 17.5 0.1 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase PDDEXK_1 PF12705.7 CQR58753.1 - 0.0072 16.3 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily ResIII PF04851.15 CQR58753.1 - 0.015 15.3 0.1 3.1 7.8 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF3433 PF11915.8 CQR58753.1 - 0.04 14.4 0.1 4.7 7.7 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3433) Sulfatase PF00884.23 CQR58754.1 - 2.2e-39 135.7 0.4 2.8e-39 135.4 0.4 1.1 1 0 0 1 1 1 1 Sulfatase TatD_DNase PF01026.21 CQR58754.1 - 0.042 13.2 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase MarR PF01047.22 CQR58755.1 - 3.6e-15 55.6 0.6 9.8e-15 54.2 0.1 1.9 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 CQR58755.1 - 1.8e-08 34.1 0.5 3.2e-08 33.3 0.5 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR58755.1 - 3.1e-08 34.0 0.3 4.4e-08 33.5 0.3 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 CQR58755.1 - 0.00071 19.7 0.1 0.0015 18.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 CQR58755.1 - 0.005 17.0 0.1 0.01 16.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TEX13 PF15186.6 CQR58755.1 - 0.0089 15.7 0.5 0.014 15.1 0.5 1.3 1 0 0 1 1 1 1 Testis-expressed sequence 13 protein family TrmB PF01978.19 CQR58755.1 - 0.045 13.6 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 CQR58755.1 - 0.049 13.2 0.1 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MCPsignal PF00015.21 CQR58756.1 - 2.3e-38 131.7 33.1 5.2e-38 130.6 16.0 3.8 1 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 CQR58756.1 - 1.2e-14 54.5 0.4 6.3e-14 52.1 0.2 2.5 2 0 0 2 2 2 1 HAMP domain BLOC1_2 PF10046.9 CQR58756.1 - 0.0003 21.0 8.1 0.45 10.9 0.1 4.2 3 1 1 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 CQR58756.1 - 0.006 16.8 13.4 6.3 7.1 1.4 5.4 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) DASH_Dam1 PF08653.10 CQR58756.1 - 0.12 12.2 0.5 8.5 6.3 0.0 3.3 3 0 0 3 3 3 0 DASH complex subunit Dam1 YkyA PF10368.9 CQR58756.1 - 0.15 11.7 3.6 0.15 11.7 0.2 2.5 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein dCache_1 PF02743.18 CQR58756.1 - 0.21 11.3 0.0 0.21 11.3 0.0 2.6 3 1 0 4 4 4 0 Cache domain KELK PF15796.5 CQR58756.1 - 0.56 10.7 2.4 0.76 10.3 0.2 2.3 3 0 0 3 3 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF1664 PF07889.12 CQR58756.1 - 0.97 9.5 8.7 3.1 7.8 0.8 3.2 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) ArsR PF09824.9 CQR58756.1 - 1.2 8.7 3.9 14 5.2 0.1 3.3 4 0 0 4 4 4 0 ArsR transcriptional regulator Vps53_N PF04100.12 CQR58756.1 - 3.6 6.5 7.1 2 7.3 1.5 2.3 2 0 0 2 2 2 0 Vps53-like, N-terminal Laminin_II PF06009.12 CQR58756.1 - 9.3 6.3 15.1 11 6.0 0.3 4.1 2 2 2 4 4 4 0 Laminin Domain II EAL PF00563.20 CQR58757.1 - 2e-65 220.6 0.0 2.9e-65 220.1 0.0 1.2 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR58757.1 - 6.7e-43 146.2 0.0 1.1e-42 145.5 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain MHYT PF03707.16 CQR58757.1 - 3.4e-31 107.2 26.4 6.3e-12 45.5 1.8 4.8 4 0 0 4 4 4 4 Bacterial signalling protein N terminal repeat Paramyxo_NS_C PF02725.14 CQR58758.1 - 0.66 10.1 4.3 0.74 9.9 1.2 2.4 3 0 0 3 3 3 0 Non-structural protein C ABC_tran PF00005.27 CQR58759.1 - 5.5e-27 94.9 0.0 8.9e-27 94.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58759.1 - 2e-10 41.0 0.4 3.2e-06 27.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR58759.1 - 0.02 15.4 0.0 0.035 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 CQR58759.1 - 0.13 12.7 0.5 3.9 7.9 0.5 2.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 CQR58759.1 - 0.16 11.7 0.0 7.3 6.2 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.6 CQR58759.1 - 0.43 9.2 2.3 1.3 7.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain SDF PF00375.18 CQR58760.1 - 1.8e-117 392.7 33.4 1.8e-117 392.7 33.4 1.4 2 0 0 2 2 2 1 Sodium:dicarboxylate symporter family GFO_IDH_MocA PF01408.22 CQR58761.1 - 4.4e-27 95.3 0.1 7.6e-27 94.5 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR58761.1 - 7.7e-06 25.9 0.0 1.3e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain UbiA PF01040.18 CQR58762.1 - 3e-26 92.2 17.5 3.8e-26 91.9 17.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Adenine_deam_C PF13382.6 CQR58762.1 - 0.12 11.7 0.2 0.31 10.4 0.2 1.6 2 0 0 2 2 2 0 Adenine deaminase C-terminal domain EAL PF00563.20 CQR58763.1 - 5.6e-68 229.0 0.0 1.3e-67 227.8 0.0 1.6 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR58763.1 - 3.6e-47 160.1 0.0 6.8e-47 159.2 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CHASE4 PF05228.13 CQR58763.1 - 6.8e-21 74.9 0.0 1.3e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 CHASE4 domain HAMP PF00672.25 CQR58763.1 - 1.4e-05 25.3 0.0 3.6e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 HAMP domain Gpr1_Fun34_YaaH PF01184.19 CQR58764.1 - 2.2e-18 66.7 17.5 2.6e-18 66.4 17.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family EAL PF00563.20 CQR58765.1 - 7.9e-70 235.1 0.0 1.2e-69 234.4 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR58765.1 - 2.8e-39 134.5 0.0 5.2e-39 133.6 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CHASE PF03924.13 CQR58765.1 - 2.8e-05 24.2 0.0 7.6e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 CHASE domain TspO_MBR PF03073.15 CQR58766.1 - 0.015 15.4 3.8 0.019 15.0 3.8 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF4083 PF13314.6 CQR58766.1 - 0.087 12.8 0.0 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Glyoxalase_4 PF13669.6 CQR58767.1 - 3.1e-10 40.3 0.0 3.7e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 CQR58767.1 - 7.2e-06 26.2 0.0 1e-05 25.8 0.0 1.2 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 CQR58767.1 - 0.00014 22.0 0.0 0.00021 21.5 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 CQR58767.1 - 0.068 14.0 0.1 0.1 13.4 0.1 1.4 1 1 0 1 1 1 0 Glyoxalase-like domain N-glycanase_N PF09112.10 CQR58767.1 - 0.15 11.8 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 Peptide-N-glycosidase F, N terminal HTH_18 PF12833.7 CQR58768.1 - 4e-23 81.5 0.0 6e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58768.1 - 1.7e-19 69.4 0.2 6.2e-11 42.1 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR58768.1 - 4e-13 49.4 0.1 5.7e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain DDE_Tnp_1 PF01609.21 CQR58769.1 - 4.3e-17 62.5 0.6 1e-16 61.2 0.6 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 CQR58769.1 - 4.4e-14 52.8 0.3 9.5e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 CQR58769.1 - 1.3e-05 25.3 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 CQR58769.1 - 0.00033 21.0 1.4 0.03 14.7 0.1 3.0 3 0 0 3 3 3 1 Transposase DDE domain DrsE_2 PF13686.6 CQR58770.1 - 8.2e-54 181.7 0.8 9e-54 181.5 0.8 1.0 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 CQR58770.1 - 1e-07 32.3 0.0 9.4e-07 29.2 0.0 2.0 1 1 0 1 1 1 1 DsrE/DsrF-like family Aminotran_5 PF00266.19 CQR58771.1 - 2.6e-43 148.4 0.0 3.8e-43 147.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SNARE_assoc PF09335.11 CQR58772.1 - 1.5e-23 83.6 8.6 1.5e-23 83.6 8.6 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF3087 PF11286.8 CQR58772.1 - 0.13 11.7 0.1 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) RseC_MucC PF04246.12 CQR58772.1 - 3.6 7.5 6.7 11 6.0 0.3 2.4 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Acetyltransf_8 PF13523.6 CQR58773.1 - 2.3e-07 30.6 0.0 6.7e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 CQR58773.1 - 2.8e-07 30.8 0.0 3.7e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 CQR58773.1 - 1.5e-06 28.9 0.0 2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Lipoprotein_9 PF03180.14 CQR58774.1 - 1.3e-84 283.0 0.1 1.5e-84 282.8 0.1 1.0 1 0 0 1 1 1 1 NLPA lipoprotein SBP_bac_6 PF13343.6 CQR58774.1 - 0.068 12.6 0.0 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Gly-zipper_YMGG PF13441.6 CQR58774.1 - 0.67 9.7 9.4 1.4 8.7 9.4 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper BPD_transp_1 PF00528.22 CQR58775.1 - 6.7e-16 58.6 15.4 6.7e-16 58.6 15.4 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR58776.1 - 1.2e-35 123.0 0.0 1.9e-35 122.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58776.1 - 1.7e-09 37.9 0.5 0.0014 18.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58776.1 - 2e-05 24.2 0.2 0.0017 17.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR58776.1 - 0.00046 20.5 0.2 0.0036 17.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 CQR58776.1 - 0.00073 20.0 0.0 0.0014 19.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 CQR58776.1 - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR58776.1 - 0.0017 18.0 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR58776.1 - 0.0018 18.8 0.1 0.0039 17.7 0.1 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 CQR58776.1 - 0.021 14.9 0.2 0.041 14.0 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 CQR58776.1 - 0.037 12.8 0.7 2.6 6.7 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.6 CQR58776.1 - 0.1 12.9 0.1 0.25 11.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain Amidohydro_1 PF01979.20 CQR58778.1 - 1.4e-28 100.2 0.0 2.7e-28 99.3 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CQR58778.1 - 1.1e-15 58.0 0.6 2.1e-06 27.5 0.2 2.9 3 0 0 3 3 3 2 Amidohydrolase family DHO_dh PF01180.21 CQR58779.1 - 6.5e-28 97.8 0.1 1e-27 97.2 0.1 1.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4_21 PF14697.6 CQR58779.1 - 6.8e-22 77.4 15.3 1.2e-21 76.6 15.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 CQR58779.1 - 1.9e-07 30.6 15.2 0.00022 20.9 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Dus PF01207.17 CQR58779.1 - 2.2e-07 30.3 0.3 4.8e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) Fer4_10 PF13237.6 CQR58779.1 - 2.3e-06 27.6 8.0 0.0024 17.9 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 CQR58779.1 - 1.3e-05 25.7 12.1 2.7e-05 24.6 12.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 CQR58779.1 - 2e-05 24.5 21.6 0.0022 18.0 3.0 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 CQR58779.1 - 0.00011 22.1 13.6 0.015 15.3 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 CQR58779.1 - 0.0002 21.4 12.5 0.00077 19.6 12.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 CQR58779.1 - 0.00051 20.5 5.6 0.13 12.8 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 CQR58779.1 - 0.0056 17.1 14.1 0.37 11.4 5.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 CQR58779.1 - 0.051 14.0 11.7 0.13 12.7 11.7 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain NMO PF03060.15 CQR58779.1 - 0.28 10.5 3.7 1.4 8.2 2.5 2.3 2 1 0 2 2 2 0 Nitronate monooxygenase ETF_QO PF05187.13 CQR58779.1 - 1.2 9.3 10.9 7.6 6.7 4.9 2.4 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 CQR58779.1 - 5.9 7.8 13.5 13 6.7 2.2 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 CQR58779.1 - 9.6 7.2 15.9 2 9.4 3.4 2.6 1 1 3 4 4 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 CQR58780.1 - 7.7e-39 132.0 0.5 1.2e-38 131.4 0.5 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 CQR58780.1 - 9.8e-35 120.2 5.5 1.3e-34 119.8 5.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR58780.1 - 3.9e-14 52.6 1.2 1.2e-09 37.9 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 CQR58780.1 - 1.7e-09 38.1 2.0 0.00066 20.2 0.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR58780.1 - 3e-07 30.4 3.9 2.3e-05 24.1 1.5 2.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 CQR58780.1 - 1.4e-05 24.7 0.3 1.4e-05 24.7 0.3 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR58780.1 - 2e-05 24.7 1.1 2e-05 24.7 1.1 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 CQR58780.1 - 3.1e-05 23.4 0.2 6.4e-05 22.4 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 CQR58780.1 - 8.4e-05 21.8 1.6 0.0002 20.6 1.6 1.6 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 CQR58780.1 - 0.00017 21.0 0.3 0.48 9.7 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 CQR58780.1 - 0.00024 19.9 1.5 0.00048 18.9 0.6 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 CQR58780.1 - 0.00029 20.2 0.4 0.00029 20.2 0.4 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 CQR58780.1 - 0.00034 21.0 0.9 0.07 13.6 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 CQR58780.1 - 0.00059 19.2 0.2 0.95 8.8 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 CQR58780.1 - 0.00068 19.0 0.5 0.00068 19.0 0.5 2.1 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase GIDA PF01134.22 CQR58780.1 - 0.002 17.3 7.5 0.0024 17.0 0.3 2.7 3 0 0 3 3 3 1 Glucose inhibited division protein A Shikimate_DH PF01488.20 CQR58780.1 - 0.0037 17.3 0.0 2.5 8.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 CQR58780.1 - 0.014 15.3 1.3 0.23 11.3 0.2 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 CQR58780.1 - 0.015 13.8 0.3 3 6.2 0.1 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like K_oxygenase PF13434.6 CQR58780.1 - 0.015 14.5 0.5 0.83 8.7 0.0 2.7 3 1 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) F420_oxidored PF03807.17 CQR58780.1 - 0.017 15.7 1.0 4.2 8.0 0.0 3.0 4 0 0 4 4 2 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.12 CQR58780.1 - 0.03 13.4 0.5 0.056 12.5 0.5 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein DJ-1_PfpI PF01965.24 CQR58780.1 - 0.071 12.9 0.4 0.83 9.4 0.2 2.3 1 1 1 2 2 2 0 DJ-1/PfpI family Fer4_7 PF12838.7 CQR58780.1 - 0.092 13.3 0.3 0.092 13.3 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 CQR58780.1 - 0.24 11.5 3.3 0.77 9.9 3.3 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Tryp_inh PF17983.1 CQR58780.1 - 0.58 10.3 3.0 1.3 9.2 3.0 1.6 1 0 0 1 1 1 0 Trypsin inhibitors 1,2 and 3 Fer4_10 PF13237.6 CQR58780.1 - 1.6 8.9 9.6 9.8 6.4 9.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain PucR PF07905.11 CQR58781.1 - 7.2e-31 106.9 0.0 4.3e-30 104.4 0.0 2.1 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family HTH_30 PF13556.6 CQR58781.1 - 1e-17 63.7 0.3 1.9e-17 62.8 0.3 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GGDEF_2 PF17853.1 CQR58781.1 - 7.9e-10 39.0 0.1 3.2e-09 37.0 0.0 2.0 2 1 0 2 2 2 1 GGDEF-like domain Aminotran_3 PF00202.21 CQR58782.1 - 3.6e-99 332.2 0.0 4e-99 332.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 CQR58782.1 - 0.0011 18.3 0.0 0.002 17.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aldedh PF00171.22 CQR58783.1 - 1.5e-148 495.2 0.0 1.6e-148 495.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family P-II PF00543.22 CQR58783.1 - 0.15 12.7 0.0 1.4 9.6 0.0 2.2 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II NMT1 PF09084.11 CQR58784.1 - 8e-46 156.7 0.7 1.2e-45 156.1 0.7 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 CQR58784.1 - 0.00034 20.4 1.2 0.15 11.8 0.2 2.4 2 0 0 2 2 2 2 NMT1-like family BPD_transp_1 PF00528.22 CQR58785.1 - 1.5e-14 54.2 13.8 1.5e-14 54.2 13.8 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF4064 PF13273.6 CQR58785.1 - 6.9 7.0 12.3 0.14 12.5 1.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) BPD_transp_1 PF00528.22 CQR58786.1 - 1.7e-21 76.8 14.6 1.7e-21 76.8 14.6 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Gly-zipper_YMGG PF13441.6 CQR58786.1 - 0.0093 15.7 4.5 12 5.7 7.8 2.4 2 1 0 2 2 2 2 YMGG-like Gly-zipper Bacteriocin_IIc PF10439.9 CQR58786.1 - 4.1 7.6 12.8 0.22 11.7 1.1 3.0 2 1 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide ABC_tran PF00005.27 CQR58787.1 - 1.6e-31 109.6 0.0 2.1e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58787.1 - 2.2e-06 27.7 0.1 0.037 13.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 CQR58787.1 - 2.3e-05 24.8 0.1 0.00011 22.6 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 CQR58787.1 - 7.6e-05 23.2 0.1 0.0001 22.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 CQR58787.1 - 0.00017 21.3 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR58787.1 - 0.00074 19.2 0.3 0.0017 18.1 0.2 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 CQR58787.1 - 0.0017 18.3 0.0 0.0041 17.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 CQR58787.1 - 0.0021 18.3 0.0 0.004 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 CQR58787.1 - 0.0049 16.8 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 CQR58787.1 - 0.012 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 CQR58787.1 - 0.016 14.7 0.0 2.3 7.6 0.0 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 CQR58787.1 - 0.02 14.5 0.1 0.036 13.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 CQR58787.1 - 0.022 15.0 0.1 0.067 13.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR58787.1 - 0.023 14.9 0.2 0.078 13.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 CQR58787.1 - 0.023 13.5 0.1 0.06 12.1 0.0 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.15 CQR58787.1 - 0.029 14.3 0.0 0.07 13.0 0.0 1.6 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 CQR58787.1 - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 CQR58787.1 - 0.046 14.2 0.0 0.062 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 CQR58787.1 - 0.074 12.4 0.0 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 CQR58787.1 - 0.076 13.0 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 CQR58787.1 - 0.09 12.7 0.0 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 CQR58787.1 - 0.12 12.8 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 CQR58787.1 - 0.13 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 CQR58787.1 - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 CQR58787.1 - 0.15 12.2 0.0 0.4 10.8 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 CQR58787.1 - 0.15 11.2 0.0 0.32 10.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 CQR58787.1 - 0.17 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.6 CQR58787.1 - 0.18 11.8 0.0 0.39 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR58787.1 - 0.2 12.2 0.1 0.37 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF1500 PF07389.12 CQR58788.1 - 0.04 14.0 0.6 0.049 13.7 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1500) HisKA_7TM PF16927.5 CQR58789.1 - 4.1e-51 174.1 21.7 5.3e-51 173.8 21.7 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase GGDEF PF00990.21 CQR58789.1 - 6e-40 136.6 0.0 8.4e-40 136.2 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 CQR58789.1 - 1.1e-10 41.7 0.0 1.9e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 CQR58789.1 - 4.8e-08 32.9 0.4 1.7e-06 27.9 0.2 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 CQR58789.1 - 1.2e-06 28.5 0.0 3.7e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 CQR58789.1 - 3.3e-06 27.3 0.0 7e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.6 CQR58789.1 - 0.00043 20.8 0.0 0.00073 20.1 0.0 1.3 1 0 0 1 1 1 1 PAS domain Lactamase_B PF00753.27 CQR58791.1 - 5.7e-14 52.6 0.4 7.3e-14 52.2 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR58791.1 - 4.4e-05 23.1 0.0 5.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF72 PF01904.18 CQR58792.1 - 7.8e-62 209.2 0.1 9.3e-62 209.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 TOPRIM_C PF16898.5 CQR58792.1 - 0.0085 16.4 0.2 0.023 15.0 0.1 1.7 2 0 0 2 2 2 1 C-terminal associated domain of TOPRIM Alpha-amylase PF00128.24 CQR58793.1 - 3.1e-27 96.0 3.6 7.4e-27 94.8 3.6 1.5 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 CQR58793.1 - 1.1e-09 37.2 0.4 0.0026 16.0 0.0 3.2 3 0 0 3 3 3 3 Glycosyl hydrolase family 70 DUF1939 PF09154.10 CQR58793.1 - 0.0017 18.4 0.3 0.011 15.9 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) BioY PF02632.14 CQR58794.1 - 1.4e-37 128.8 19.4 2.1e-37 128.2 19.4 1.3 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 CQR58794.1 - 0.018 15.2 22.0 0.024 14.8 22.0 1.2 1 0 0 1 1 1 0 ECF transporter, substrate-specific component MerE PF05052.12 CQR58794.1 - 0.22 11.5 5.2 0.43 10.5 1.0 2.6 1 1 1 2 2 2 0 MerE protein ABC_tran PF00005.27 CQR58795.1 - 2e-26 93.1 0.1 3.9e-26 92.2 0.0 1.5 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 CQR58795.1 - 1e-07 31.6 0.1 5.6e-07 29.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 CQR58795.1 - 9.9e-07 28.9 1.2 0.0047 16.8 0.8 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 CQR58795.1 - 0.0006 20.2 0.2 0.0013 19.2 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 CQR58795.1 - 0.0017 18.6 0.2 0.06 13.6 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 CQR58795.1 - 0.0027 18.0 0.2 0.026 14.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 CQR58795.1 - 0.0053 16.5 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 CQR58795.1 - 0.006 16.0 0.0 0.99 8.8 0.0 2.5 2 1 1 3 3 3 1 Bacterial TniB protein AAA_25 PF13481.6 CQR58795.1 - 0.0084 15.7 0.1 0.22 11.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 CQR58795.1 - 0.03 13.6 0.1 5.3 6.3 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 CQR58795.1 - 0.08 13.2 0.4 0.2 11.9 0.2 1.7 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 CQR58795.1 - 0.14 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_23 PF13476.6 CQR58795.1 - 0.24 11.9 0.3 0.36 11.3 0.3 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 CQR58796.1 - 3.1e-26 92.5 0.0 4.6e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter CbiQ PF02361.16 CQR58796.1 - 3.1e-20 72.7 6.8 5.2e-20 72.0 6.8 1.4 1 0 0 1 1 1 1 Cobalt transport protein AAA_21 PF13304.6 CQR58796.1 - 6.4e-16 59.0 0.2 2.3e-09 37.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 CQR58796.1 - 0.00033 20.9 0.2 0.0029 17.9 0.2 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 CQR58796.1 - 0.0017 17.9 0.0 0.076 12.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 CQR58796.1 - 0.0023 17.7 0.0 0.025 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 CQR58796.1 - 0.0045 16.7 0.2 0.011 15.5 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR58796.1 - 0.0092 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 CQR58796.1 - 0.011 16.0 0.1 0.054 13.7 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 CQR58796.1 - 0.015 15.8 0.0 0.023 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR58796.1 - 0.081 13.1 0.4 0.15 12.2 0.4 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CQR58796.1 - 0.11 13.0 0.3 0.26 11.9 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR58796.1 - 0.15 11.7 0.0 0.37 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR58796.1 - 0.17 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 CQR58796.1 - 0.28 10.0 0.2 19 3.9 0.2 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 CQR58796.1 - 0.44 10.9 2.5 0.4 11.0 0.9 1.8 2 1 0 2 2 2 0 AAA ATPase domain DUF2156 PF09924.9 CQR58797.1 - 6.5e-90 301.2 0.1 9.1e-90 300.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) LPG_synthase_TM PF03706.13 CQR58797.1 - 1e-12 48.3 38.3 1e-12 48.3 38.3 3.4 2 1 1 3 3 3 2 Lysylphosphatidylglycerol synthase TM region FlxA PF14282.6 CQR58798.1 - 1.4e-12 47.5 9.2 1.7e-12 47.2 9.2 1.2 1 0 0 1 1 1 1 FlxA-like protein ABC_tran_CTD PF16326.5 CQR58798.1 - 0.042 14.1 9.0 1.3 9.3 1.7 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain FemAB PF02388.16 CQR58798.1 - 0.058 12.3 3.7 0.068 12.0 3.7 1.1 1 0 0 1 1 1 0 FemAB family CASP_C PF08172.12 CQR58798.1 - 0.083 12.2 4.2 0.094 12.1 4.2 1.2 1 0 0 1 1 1 0 CASP C terminal HlyD_2 PF12700.7 CQR58798.1 - 0.083 11.6 3.8 0.11 11.3 3.8 1.0 1 0 0 1 1 1 0 HlyD family secretion protein Enkurin PF13864.6 CQR58798.1 - 0.086 13.3 7.0 2.2 8.8 0.3 2.1 1 1 1 2 2 2 0 Calmodulin-binding DUF4199 PF13858.6 CQR58798.1 - 0.11 12.9 0.1 0.14 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Ax_dynein_light PF10211.9 CQR58798.1 - 0.11 12.4 4.2 0.14 12.1 4.2 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain APG6_N PF17675.1 CQR58798.1 - 0.2 12.2 6.9 0.35 11.4 6.9 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region DivIC PF04977.15 CQR58798.1 - 0.23 11.3 11.1 1.1 9.1 0.7 2.2 1 1 1 2 2 2 0 Septum formation initiator DUF4140 PF13600.6 CQR58798.1 - 0.23 11.9 7.0 0.54 10.7 0.5 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Allexi_40kDa PF05549.11 CQR58798.1 - 0.29 10.6 2.0 0.32 10.5 2.0 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein TMPIT PF07851.13 CQR58798.1 - 0.83 8.8 3.8 1 8.6 3.8 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF5320 PF17253.2 CQR58798.1 - 0.99 10.5 5.7 2.3 9.3 0.2 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5320) DUF4810 PF16068.5 CQR58798.1 - 2.5 8.7 6.4 9.7 6.8 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4810) Siah-Interact_N PF09032.11 CQR58798.1 - 2.6 8.4 10.7 8.1 6.8 2.6 2.3 1 1 1 2 2 2 0 Siah interacting protein, N terminal SlyX PF04102.12 CQR58798.1 - 2.9 8.6 5.5 2.1 9.0 1.1 2.1 1 1 1 2 2 2 0 SlyX OrfB_IS605 PF01385.19 CQR58799.1 - 1.2e-29 103.0 2.1 3.3e-29 101.6 2.1 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CQR58799.1 - 2.6e-23 81.7 0.5 5.7e-23 80.6 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 CQR58799.1 - 3e-23 81.0 1.8 7.9e-23 79.7 1.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L32e PF01655.18 CQR58799.1 - 0.012 16.0 4.9 0.029 14.8 4.9 1.6 1 0 0 1 1 1 0 Ribosomal protein L32 P-mevalo_kinase PF04275.14 CQR58799.1 - 0.068 13.1 1.1 0.18 11.8 1.1 1.6 1 0 0 1 1 1 0 Phosphomevalonate kinase zf-RanBP PF00641.18 CQR58799.1 - 9.1 5.7 8.7 0.69 9.3 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others MFS_1 PF07690.16 CQR58800.1 - 8.4e-43 146.6 47.8 8.4e-43 146.6 47.8 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR58800.1 - 1.2e-06 27.6 11.7 1.2e-06 27.6 11.7 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 CQR58800.1 - 0.0007 18.1 20.0 0.0007 18.1 20.0 1.6 2 1 0 2 2 2 1 Transmembrane secretion effector MFS_4 PF06779.14 CQR58800.1 - 0.0024 17.3 11.4 0.0024 17.3 11.4 2.5 2 1 0 2 2 2 2 Uncharacterised MFS-type transporter YbfB DUF2981 PF11200.8 CQR58800.1 - 0.19 11.5 0.8 0.32 10.7 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) DLH PF01738.18 CQR58801.1 - 2.7e-06 27.1 0.0 4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 CQR58801.1 - 2.9e-05 24.0 0.0 0.0015 18.3 0.0 2.0 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.21 CQR58801.1 - 6.9e-05 22.4 0.1 0.053 13.0 0.1 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 CQR58801.1 - 0.0034 16.7 0.0 0.093 12.0 0.0 2.2 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 CQR58801.1 - 0.019 14.8 0.1 0.5 10.2 0.1 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold Esterase PF00756.20 CQR58801.1 - 0.047 13.3 0.0 0.1 12.2 0.0 1.5 2 0 0 2 2 2 0 Putative esterase DUF2379 PF09543.10 CQR58801.1 - 0.083 13.1 0.0 9.5 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2379) Abhydrolase_4 PF08386.10 CQR58801.1 - 0.098 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein Glyoxalase PF00903.25 CQR58802.1 - 1.4e-33 115.9 0.0 4.3e-32 111.0 0.0 2.2 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 CQR58802.1 - 0.00019 21.7 0.2 3.4 8.0 0.0 3.8 2 2 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF4166 PF13761.6 CQR58802.1 - 0.11 12.2 0.1 0.31 10.8 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4166) DoxX PF07681.12 CQR58803.1 - 5.8e-21 74.9 12.7 5.8e-21 74.9 12.7 1.6 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.6 CQR58803.1 - 0.00076 19.6 11.3 0.001 19.2 11.3 1.2 1 0 0 1 1 1 1 DoxX-like family DoxD PF04173.13 CQR58803.1 - 0.0087 16.0 2.1 0.0087 16.0 2.1 1.5 2 0 0 2 2 2 1 TQO small subunit DoxD DUF3488 PF11992.8 CQR58803.1 - 0.76 8.7 5.2 1.1 8.2 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF4781 PF16013.5 CQR58803.1 - 1.4 7.6 3.9 1.9 7.2 3.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) MarR PF01047.22 CQR58804.1 - 5.6e-14 51.8 0.0 1e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR58804.1 - 1.4e-11 44.1 0.0 2.5e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR58804.1 - 9.7e-10 38.8 0.1 5.9e-09 36.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 CQR58804.1 - 5.4e-08 32.9 0.0 9.5e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR58804.1 - 3.6e-05 23.2 0.1 0.00013 21.5 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding SMC_ScpB PF04079.16 CQR58804.1 - 0.082 12.5 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB PadR PF03551.14 CQR58804.1 - 0.097 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HxlR PF01638.17 CQR58804.1 - 0.12 12.3 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.19 CQR58804.1 - 0.12 12.2 0.1 0.32 10.9 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PNP_UDP_1 PF01048.20 CQR58805.1 - 2.2e-13 50.0 11.7 2.6e-13 49.8 11.7 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily VitK2_biosynth PF02621.14 CQR58806.1 - 2.7e-81 273.0 0.0 3.1e-81 272.8 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis NMT1 PF09084.11 CQR58806.1 - 4.3e-05 23.5 0.0 6.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 CQR58806.1 - 0.013 15.1 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 CQR58806.1 - 0.039 13.4 0.0 0.42 10.0 0.0 2.1 2 1 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Methyltransf_11 PF08241.12 CQR58807.1 - 8.3e-20 71.3 0.0 1.7e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 CQR58807.1 - 2.5e-18 66.6 0.0 4.5e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR58807.1 - 3.7e-15 56.0 0.0 5e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58807.1 - 1.1e-12 48.6 0.0 1.8e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR58807.1 - 3.4e-10 39.7 0.0 4.9e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 CQR58807.1 - 1.8e-09 37.6 0.0 2.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 CQR58807.1 - 5.1e-05 22.0 0.0 6.1e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 CQR58807.1 - 0.0023 17.8 0.0 0.026 14.4 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 CQR58807.1 - 0.053 12.4 0.0 0.08 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 CQR58807.1 - 0.18 11.4 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Ski2_N PF17911.1 CQR58807.1 - 0.21 11.4 0.0 0.39 10.5 0.0 1.4 1 0 0 1 1 1 0 Ski2 N-terminal region DUF559 PF04480.12 CQR58808.1 - 0.00019 21.2 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF559) HTH_27 PF13463.6 CQR58808.1 - 0.00029 21.3 0.0 0.00059 20.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MTES_1575 PF18741.1 CQR58808.1 - 0.00097 19.3 0.0 0.0016 18.6 0.0 1.4 1 0 0 1 1 1 1 REase_MTES_1575 RAP PF08373.10 CQR58808.1 - 0.0052 16.8 0.1 0.012 15.7 0.0 1.6 2 0 0 2 2 2 1 RAP domain AbiEi_4 PF13338.6 CQR58808.1 - 0.059 13.5 1.5 0.081 13.1 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TrmB PF01978.19 CQR58808.1 - 0.066 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Ribosomal_S25 PF03297.15 CQR58808.1 - 0.073 13.3 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 S25 ribosomal protein FtsK_gamma PF09397.10 CQR58808.1 - 0.082 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Ftsk gamma domain MarR PF01047.22 CQR58808.1 - 0.096 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 CQR58808.1 - 0.13 12.6 0.1 0.74 10.2 0.0 1.9 2 0 0 2 2 2 0 Penicillinase repressor SBP_bac_8 PF13416.6 CQR58810.1 - 1.4e-38 133.3 0.2 1.6e-38 133.1 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58810.1 - 2.5e-28 99.2 0.5 3.3e-28 98.8 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 CQR58810.1 - 1.1e-23 84.7 1.6 8.7e-23 81.7 1.6 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 CQR58810.1 - 2.7e-14 53.5 0.0 4e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Lipoprotein_8 PF02030.15 CQR58810.1 - 9e-08 31.3 0.1 3.9e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Hypothetical lipoprotein (MG045 family) ABC2_membrane_3 PF12698.7 CQR58810.1 - 0.052 12.6 1.2 0.09 11.9 1.2 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein THF_DHG_CYH_C PF02882.19 CQR58810.1 - 0.16 11.3 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BPD_transp_1 PF00528.22 CQR58811.1 - 1.7e-16 60.5 13.8 1.7e-16 60.5 13.8 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3483 PF11982.8 CQR58811.1 - 0.61 9.7 6.1 5.7 6.5 0.0 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF3483) Insulin_TMD PF17870.1 CQR58811.1 - 2.3 8.4 9.4 2.5 8.3 0.0 3.8 3 0 0 3 3 3 0 Insulin receptor trans-membrane segment Orf78 PF06024.12 CQR58811.1 - 4.4 7.7 0.0 4.4 7.7 0.0 3.0 3 0 0 3 3 3 0 Orf78 (ac78) DUF5325 PF17259.2 CQR58811.1 - 5.1 7.1 0.0 5.1 7.1 0.0 3.8 4 0 0 4 4 4 0 Family of unknown function (DUF5325) BPD_transp_1 PF00528.22 CQR58812.1 - 9e-08 32.1 40.1 2.5e-06 27.3 40.1 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR58813.1 - 4.2e-36 124.5 0.0 6.9e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58813.1 - 7e-10 39.2 0.8 3.1e-05 24.0 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 CQR58813.1 - 3.1e-08 33.6 0.0 6e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 TOBE domain AAA PF00004.29 CQR58813.1 - 7.2e-05 23.2 0.2 0.0018 18.7 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 CQR58813.1 - 0.00024 20.6 0.1 0.004 16.6 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 CQR58813.1 - 0.0016 18.4 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 CQR58813.1 - 0.0022 18.4 0.0 0.0044 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 CQR58813.1 - 0.0043 17.3 1.9 1.7 8.8 0.1 2.7 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 CQR58813.1 - 0.0069 16.7 0.6 0.027 14.8 0.6 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR58813.1 - 0.0071 15.2 0.0 0.36 9.6 0.0 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_25 PF13481.6 CQR58813.1 - 0.019 14.5 0.1 0.72 9.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR58813.1 - 0.022 15.3 0.0 0.048 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR58813.1 - 0.031 14.2 0.0 0.08 12.8 0.0 1.6 2 0 0 2 2 1 0 RsgA GTPase AAA_29 PF13555.6 CQR58813.1 - 0.032 14.0 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 CQR58813.1 - 0.06 13.0 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 CQR58813.1 - 0.068 13.2 0.0 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 CQR58813.1 - 0.07 13.5 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 CQR58813.1 - 0.097 12.6 0.1 0.18 11.7 0.1 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 CQR58813.1 - 0.11 12.2 0.0 0.35 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 CQR58813.1 - 0.11 12.5 0.1 0.37 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CysA_C_terminal PF17850.1 CQR58813.1 - 0.14 12.7 0.1 0.38 11.3 0.1 1.8 1 0 0 1 1 1 0 CysA C-terminal regulatory domain FUSC_2 PF13515.6 CQR58814.1 - 4.5e-10 39.7 13.0 7.5e-10 39.0 13.0 1.3 1 0 0 1 1 1 1 Fusaric acid resistance protein-like ArAE_1 PF06081.11 CQR58814.1 - 2.6e-09 37.4 12.5 3.8e-09 36.8 12.5 1.2 1 0 0 1 1 1 1 Aromatic acid exporter family member 1 FUSC PF04632.12 CQR58814.1 - 3.7e-06 25.8 16.7 0.0032 16.1 6.8 2.1 2 0 0 2 2 2 2 Fusaric acid resistance protein family Arm-DNA-bind_2 PF12167.8 CQR58814.1 - 0.06 13.3 0.1 0.16 11.9 0.0 1.6 2 0 0 2 2 2 0 Arm DNA-binding domain ALMT PF11744.8 CQR58814.1 - 5.7 5.7 6.2 16 4.2 0.2 2.2 2 0 0 2 2 2 0 Aluminium activated malate transporter FapA PF03961.13 CQR58815.1 - 1.4e-36 126.1 0.0 2.2e-30 105.7 0.0 2.2 2 0 0 2 2 2 2 Flagellar Assembly Protein A MinC_C PF03775.16 CQR58815.1 - 0.043 13.8 3.1 0.085 12.9 0.3 2.9 3 1 0 3 3 3 0 Septum formation inhibitor MinC, C-terminal domain DUF4745 PF15923.5 CQR58815.1 - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4745) Flavin_Reduct PF01613.18 CQR58816.1 - 9.5e-27 93.9 0.0 1.2e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain EamA PF00892.20 CQR58817.1 - 1.8e-48 164.2 48.1 2.8e-25 89.1 20.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family LysR_substrate PF03466.20 CQR58818.1 - 2.9e-37 128.1 0.1 3.7e-37 127.7 0.1 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 CQR58818.1 - 3.5e-20 71.7 0.5 1.6e-19 69.6 0.1 2.2 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family Aldo_ket_red PF00248.21 CQR58819.1 - 9.8e-71 238.3 0.0 1.1e-70 238.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SapB_1 PF05184.15 CQR58820.1 - 0.12 12.4 0.9 0.24 11.5 0.9 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 1 HATPase_c PF02518.26 CQR58821.1 - 4.7e-21 75.4 0.0 8.9e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR58821.1 - 1.1e-15 57.7 0.0 3.5e-15 56.1 0.0 1.9 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 CQR58821.1 - 1.2e-09 38.0 0.2 1.2e-09 38.0 0.2 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 CQR58821.1 - 0.0003 20.6 0.0 0.00053 19.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR58821.1 - 0.0014 18.5 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 CQR58821.1 - 0.024 14.6 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain V_ATPase_I PF01496.19 CQR58821.1 - 0.036 12.0 0.4 0.073 11.0 0.0 1.7 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family SKA2 PF16740.5 CQR58821.1 - 0.059 13.2 0.3 0.16 11.8 0.3 1.8 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 DUF948 PF06103.11 CQR58821.1 - 0.059 13.6 1.8 0.065 13.5 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HIP1_clath_bdg PF16515.5 CQR58821.1 - 0.18 12.5 6.2 1.2 9.7 0.7 3.1 3 1 1 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Trans_reg_C PF00486.28 CQR58822.1 - 1.3e-24 86.0 2.9 1.6e-24 85.8 1.1 1.9 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR58822.1 - 2.3e-23 82.5 0.1 3.4e-23 81.9 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR58822.1 - 0.0072 15.8 0.1 0.3 10.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Prismane PF03063.20 CQR58823.1 - 3e-182 606.9 0.1 3.4e-182 606.7 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family cNMP_binding PF00027.29 CQR58824.1 - 1.4e-18 66.7 0.0 2.3e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 CQR58824.1 - 6.2e-17 61.3 1.4 1.5e-15 56.9 0.1 2.3 1 1 1 2 2 2 2 Crp-like helix-turn-helix domain HTH_20 PF12840.7 CQR58824.1 - 0.039 14.0 0.1 0.16 12.0 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Aldedh PF00171.22 CQR58825.1 - 5.9e-95 318.5 0.0 6.6e-95 318.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YqhG PF11079.8 CQR58825.1 - 0.13 11.2 0.1 9.2 5.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein YqhG of unknown function Ribonuc_L-PSP PF01042.21 CQR58826.1 - 1.9e-25 89.2 0.0 2.1e-25 89.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP T2SSE PF00437.20 CQR58827.1 - 0.14 11.2 3.0 98 1.9 0.0 5.7 5 2 3 8 8 8 0 Type II/IV secretion system protein EAL PF00563.20 CQR58828.1 - 4.2e-69 232.7 0.0 6.5e-69 232.1 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR58828.1 - 1.6e-40 138.5 0.0 3e-40 137.6 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 CQR58828.1 - 3.2e-20 72.2 1.3 7.9e-20 71.0 1.3 1.7 1 0 0 1 1 1 1 PAS fold ABC_sub_bind PF04392.12 CQR58828.1 - 6.4e-13 48.6 0.0 1.3e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter substrate binding protein PAS_9 PF13426.7 CQR58828.1 - 2.5e-09 37.3 0.0 8.3e-09 35.6 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 CQR58828.1 - 0.00021 21.2 0.0 0.00056 19.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 CQR58828.1 - 0.001 19.3 0.8 0.01 16.1 0.0 2.6 3 0 0 3 3 3 1 PAS fold PAS_11 PF14598.6 CQR58828.1 - 0.014 15.5 0.1 0.1 12.7 0.0 2.3 1 1 1 2 2 2 0 PAS domain PAS_8 PF13188.7 CQR58828.1 - 0.028 14.4 0.1 8.2 6.6 0.0 2.8 2 0 0 2 2 2 0 PAS domain PAGK PF15284.6 CQR58828.1 - 0.099 12.6 0.2 0.4 10.6 0.0 2.0 2 0 0 2 2 2 0 Phage-encoded virulence factor Lge1 PF11488.8 CQR58828.1 - 0.28 11.4 3.4 0.61 10.3 3.4 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 DUF948 PF06103.11 CQR58828.1 - 1.3 9.4 2.8 6.4 7.1 0.3 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Peripla_BP_3 PF13377.6 CQR58830.1 - 4.3e-32 111.7 0.1 9.9e-32 110.6 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR58830.1 - 1.9e-23 83.3 0.0 2.4e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family LacI PF00356.21 CQR58830.1 - 3.6e-22 77.9 0.3 8.7e-22 76.7 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Peripla_BP_4 PF13407.6 CQR58830.1 - 6.2e-16 58.8 0.0 8.2e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_Tnp_ISL3 PF13542.6 CQR58830.1 - 0.0015 17.9 0.0 0.0047 16.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 CQR58830.1 - 0.0097 16.0 0.0 0.029 14.4 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.6 CQR58830.1 - 0.032 14.0 0.2 2.5 7.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 CQR58830.1 - 0.082 13.3 1.2 0.26 11.7 0.0 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain DinB_2 PF12867.7 CQR58831.1 - 3e-11 43.9 0.1 3.5e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 DinB superfamily DUF664 PF04978.12 CQR58831.1 - 7.6e-06 26.4 0.0 9.2e-06 26.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF664) MDMPI_N PF11716.8 CQR58831.1 - 0.00092 19.9 0.0 0.0011 19.7 0.0 1.1 1 0 0 1 1 1 1 Mycothiol maleylpyruvate isomerase N-terminal domain DinB PF05163.12 CQR58831.1 - 0.0011 19.0 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 DinB family DUF1572 PF07609.11 CQR58831.1 - 0.08 12.7 0.3 0.12 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1572) Glyco_hydro_65m PF03632.15 CQR58832.1 - 6.8e-128 426.8 0.5 9.2e-128 426.4 0.5 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 CQR58832.1 - 1.5e-65 221.0 0.0 2.3e-65 220.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain HAD_2 PF13419.6 CQR58832.1 - 2.1e-21 76.8 0.0 3.1e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR58832.1 - 1e-14 55.3 0.1 4.7e-14 53.2 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_hydro_65C PF03633.15 CQR58832.1 - 2.4e-14 53.0 0.0 5.1e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, C-terminal domain HAD PF12710.7 CQR58832.1 - 0.00047 20.6 0.1 0.0025 18.2 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR58832.1 - 0.0022 18.0 0.0 0.0045 17.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like BPD_transp_1 PF00528.22 CQR58833.1 - 3e-16 59.7 18.3 3e-16 59.7 18.3 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TctB PF07331.11 CQR58833.1 - 0.034 14.4 0.1 0.034 14.4 0.1 3.4 2 1 1 3 3 3 0 Tripartite tricarboxylate transporter TctB family BPD_transp_1 PF00528.22 CQR58834.1 - 9.4e-16 58.1 17.6 9.4e-16 58.1 17.6 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SLATT_4 PF18186.1 CQR58834.1 - 2.7 7.6 3.9 3.3 7.3 0.3 2.3 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 4 SBP_bac_1 PF01547.25 CQR58835.1 - 6.7e-14 52.6 16.9 1.1e-13 51.9 16.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3688 PF12461.8 CQR58835.1 - 0.077 11.4 0.4 0.52 8.7 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3688) Peripla_BP_1 PF00532.21 CQR58836.1 - 1.2e-35 123.3 0.0 1.5e-35 123.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_3 PF13377.6 CQR58836.1 - 4.6e-35 121.4 0.0 2e-34 119.3 0.0 1.9 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_4 PF13407.6 CQR58836.1 - 2.2e-19 70.1 0.0 3e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain LacI PF00356.21 CQR58836.1 - 2.6e-16 59.2 1.9 5.2e-16 58.2 1.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family AIRS PF00586.24 CQR58836.1 - 0.12 13.0 0.0 0.86 10.3 0.0 2.4 3 1 0 3 3 3 0 AIR synthase related protein, N-terminal domain HTH_3 PF01381.22 CQR58836.1 - 0.17 12.0 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Bac_luciferase PF00296.20 CQR58837.1 - 1.9e-35 122.8 0.9 2.7e-35 122.3 0.9 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase N_BRCA1_IG PF16158.5 CQR58838.1 - 0.054 14.2 0.0 0.12 13.1 0.0 1.6 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene Peptidase_M73 PF12389.8 CQR58838.1 - 0.077 12.8 0.0 0.62 9.9 0.0 1.9 2 0 0 2 2 2 0 Camelysin metallo-endopeptidase Sortase PF04203.13 CQR58839.1 - 7.8e-24 83.9 0.0 1e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 Sortase domain Peptidase_M20 PF01546.28 CQR58840.1 - 5e-14 52.5 0.4 1.1e-13 51.4 0.4 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 CQR58840.1 - 1.2e-10 41.2 0.0 9.1e-10 38.4 0.0 2.3 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 CQR58840.1 - 2e-05 23.8 0.0 0.017 14.2 0.0 2.3 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase HxlR PF01638.17 CQR58841.1 - 2.5e-35 120.2 0.2 3.2e-35 119.8 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR58841.1 - 0.057 13.4 0.1 0.099 12.6 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_12 PF08461.10 CQR58841.1 - 0.069 13.1 0.1 0.18 11.8 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Oxidored_FMN PF00724.20 CQR58842.1 - 2.2e-86 290.2 0.0 2.5e-86 290.0 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family DHO_dh PF01180.21 CQR58842.1 - 6.8e-05 22.2 0.0 0.00016 21.0 0.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 CQR58842.1 - 0.018 14.1 0.1 0.09 11.8 0.0 1.9 2 0 0 2 2 2 0 FMN-dependent dehydrogenase AP_endonuc_2 PF01261.24 CQR58842.1 - 0.074 12.5 0.0 7.8 5.9 0.0 2.4 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel His_biosynth PF00977.21 CQR58842.1 - 0.088 12.2 0.0 0.43 10.0 0.0 1.8 2 0 0 2 2 2 0 Histidine biosynthesis protein HxlR PF01638.17 CQR58843.1 - 2e-37 126.9 0.4 2.4e-37 126.6 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR58843.1 - 0.0092 15.9 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 CQR58843.1 - 0.0094 16.1 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 CQR58843.1 - 0.031 14.2 0.0 0.071 13.1 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 CQR58843.1 - 0.046 13.6 0.2 0.088 12.8 0.2 1.4 1 0 0 1 1 1 0 MarR family Cupin_2 PF07883.11 CQR58844.1 - 9.6e-15 54.1 0.2 1.2e-14 53.8 0.2 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 CQR58844.1 - 1.3e-06 28.4 0.1 1.6e-06 28.0 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 CQR58844.1 - 0.0014 18.5 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain DMSP_lyase PF16867.5 CQR58844.1 - 0.0056 16.3 0.1 0.0077 15.9 0.1 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase ARD PF03079.14 CQR58844.1 - 0.0076 16.4 0.0 0.0097 16.1 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family Ectoine_synth PF06339.12 CQR58844.1 - 0.035 14.3 0.0 0.043 14.0 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase EutQ PF06249.12 CQR58844.1 - 0.038 13.7 0.0 0.044 13.6 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.12 CQR58844.1 - 0.049 13.3 0.0 0.1 12.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF861) SIS PF01380.22 CQR58845.1 - 8.6e-16 58.0 0.0 1.2e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 CQR58845.1 - 2.6e-08 34.0 5.3 5.8e-05 23.1 0.6 2.2 1 1 1 2 2 2 2 SIS domain OMPdecase PF00215.24 CQR58846.1 - 1.4e-28 100.0 7.7 1.7e-28 99.7 7.7 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 CQR58846.1 - 0.00015 21.2 1.0 0.00023 20.6 1.0 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PEP_mutase PF13714.6 CQR58846.1 - 0.0006 19.3 0.9 0.0017 17.9 0.3 1.8 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase PRAI PF00697.22 CQR58846.1 - 0.00075 19.3 1.3 0.0012 18.7 1.1 1.3 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 CQR58846.1 - 0.0016 17.8 1.8 0.003 16.9 0.6 2.1 1 1 0 1 1 1 1 Thiamine monophosphate synthase Scaffolding_pro PF11418.8 CQR58846.1 - 0.17 12.4 0.0 0.3 11.7 0.0 1.4 1 0 0 1 1 1 0 Phi29 scaffolding protein MatE PF01554.18 CQR58847.1 - 4.1e-62 208.6 39.2 2.1e-32 112.0 10.5 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 CQR58847.1 - 5.3e-07 29.8 45.6 0.00038 20.5 22.9 4.7 2 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_25 PF13649.6 CQR58848.1 - 1.3e-12 48.3 0.0 6.1e-12 46.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 CQR58848.1 - 3.5e-12 46.4 0.0 6e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 CQR58848.1 - 5.3e-12 46.2 0.0 1.3e-11 45.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 CQR58848.1 - 6.1e-10 39.7 0.0 1.3e-09 38.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 CQR58848.1 - 2.3e-09 37.3 0.0 2.9e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 CQR58848.1 - 6.3e-07 29.0 0.0 9.1e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 CQR58848.1 - 0.033 13.5 0.0 0.07 12.4 0.0 1.5 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_33 PF10017.9 CQR58848.1 - 0.056 12.6 0.0 0.065 12.4 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent SBP_bac_1 PF01547.25 CQR58849.1 - 8.7e-32 111.3 14.6 1.2e-31 110.8 14.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58849.1 - 3.8e-30 105.7 7.2 5.1e-30 105.2 7.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 CQR58849.1 - 1.6e-05 24.4 0.1 0.017 14.5 0.1 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR58850.1 - 4.9e-26 91.1 0.0 8.2e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_18 PF12833.7 CQR58850.1 - 3.5e-19 68.8 0.0 8.3e-19 67.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58850.1 - 2e-17 62.8 0.1 2e-07 30.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family His_kinase PF06580.13 CQR58851.1 - 5.9e-24 84.2 0.0 5.9e-24 84.2 0.0 2.3 3 1 0 3 3 3 1 Histidine kinase dCache_1 PF02743.18 CQR58851.1 - 7.8e-15 55.3 0.3 1.5e-14 54.4 0.3 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 CQR58851.1 - 4.6e-10 40.0 0.1 8.9e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 CQR58851.1 - 0.00034 20.9 0.1 0.00084 19.7 0.1 1.7 1 0 0 1 1 1 1 HAMP domain HATPase_c_3 PF13589.6 CQR58851.1 - 0.064 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YdjO PF14169.6 CQR58852.1 - 4.5e-28 96.8 2.7 5.5e-28 96.5 2.7 1.1 1 0 0 1 1 1 1 Cold-inducible protein YdjO CSD PF00313.22 CQR58853.1 - 1.3e-30 105.0 1.8 1.4e-30 104.9 1.8 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 CQR58853.1 - 0.0047 16.6 1.9 0.0078 15.9 1.9 1.7 1 1 0 1 1 1 1 Ribonuclease B OB domain S1 PF00575.23 CQR58853.1 - 0.028 14.7 0.0 0.034 14.5 0.0 1.2 1 0 0 1 1 1 0 S1 RNA binding domain Lactamase_B_2 PF12706.7 CQR58855.1 - 1.3e-46 158.7 0.0 2.5e-46 157.8 0.0 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 CQR58855.1 - 2e-15 57.0 0.0 2.7e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 CQR58855.1 - 0.0017 18.4 0.1 0.041 13.9 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily HAD_2 PF13419.6 CQR58856.1 - 2e-18 67.1 0.0 1e-17 64.8 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 CQR58856.1 - 4.2e-15 56.6 0.0 2.2e-14 54.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 CQR58856.1 - 1.9e-10 40.6 0.0 3.4e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 CQR58856.1 - 0.0015 18.6 0.0 0.0057 16.8 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 CQR58856.1 - 0.0027 18.1 0.1 0.0075 16.7 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cu_amine_oxidN1 PF07833.11 CQR58857.1 - 8.3e-17 61.5 0.5 7.3e-16 58.4 0.0 2.3 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain DUF3221 PF11518.8 CQR58857.1 - 0.087 13.2 0.0 4.8 7.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3221) Ribosomal_L31 PF01197.18 CQR58858.1 - 3.7e-25 87.9 0.1 4.4e-25 87.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31 Acetyltransf_1 PF00583.25 CQR58859.1 - 8e-13 48.7 0.1 5.9e-11 42.6 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 CQR58859.1 - 1.1e-11 45.0 0.3 3.7e-10 40.1 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR58859.1 - 2.3e-08 34.0 0.0 6.3e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 CQR58859.1 - 5.3e-05 23.3 0.2 0.0011 19.0 0.2 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR58859.1 - 0.00044 20.1 0.0 0.0011 18.9 0.0 1.7 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 CQR58859.1 - 0.1 12.3 0.0 0.58 9.8 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain adh_short_C2 PF13561.6 CQR58860.1 - 1.5e-49 168.7 0.1 2.1e-49 168.2 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR58860.1 - 3.6e-40 137.5 0.0 4.4e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR58860.1 - 1.8e-06 28.0 0.1 2.7e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 CQR58860.1 - 4.5e-05 23.4 0.1 7.3e-05 22.7 0.1 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 CQR58860.1 - 0.0079 16.1 0.2 0.013 15.4 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 CQR58860.1 - 0.084 12.2 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 CQR58860.1 - 0.1 12.9 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GGDEF PF00990.21 CQR58861.1 - 4.4e-06 26.5 0.0 6.1e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Internalin_N PF12354.8 CQR58861.1 - 1.4 9.0 0.0 1.4 9.0 0.0 3.5 3 1 2 5 5 5 0 Bacterial adhesion/invasion protein N terminal BcsB PF03170.13 CQR58862.1 - 2.2e-48 165.1 2.4 2.8e-48 164.7 2.4 1.0 1 0 0 1 1 1 1 Bacterial cellulose synthase subunit Glyco_tranf_2_3 PF13641.6 CQR58863.1 - 4.2e-34 118.4 0.0 5.3e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 CQR58863.1 - 2.1e-26 92.8 0.0 2.9e-26 92.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 CQR58863.1 - 1.7e-23 83.6 10.4 5.1e-23 82.0 10.4 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 CQR58863.1 - 8.3e-16 57.9 0.0 2.3e-15 56.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 CQR58863.1 - 5e-06 26.2 0.0 2.5e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 CQR58863.1 - 8.5e-06 24.7 11.5 0.72 8.4 0.0 3.1 3 0 0 3 3 3 3 Chitin synthase Glyco_tranf_2_4 PF13704.6 CQR58863.1 - 0.0035 17.8 0.0 0.01 16.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Cellulose_synt PF03552.14 CQR58863.1 - 0.28 9.6 11.9 0.98 7.8 0.0 2.3 2 0 0 2 2 2 0 Cellulose synthase DUF4199 PF13858.6 CQR58863.1 - 2 8.8 18.1 0.5 10.7 12.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) Tetraspanin PF00335.20 CQR58863.1 - 4 7.1 10.3 25 4.5 8.1 2.2 2 0 0 2 2 2 0 Tetraspanin family DUF2334 PF10096.9 CQR58864.1 - 0.00092 18.9 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) MPS-4 PF17523.2 CQR58865.1 - 2.4 8.3 7.0 0.48 10.6 0.2 3.1 3 0 0 3 3 3 0 MinK-related peptide, potassium channel accessory sub-unit protein 4 Ion_trans_2 PF07885.16 CQR58867.1 - 4.1e-16 58.7 13.1 6.5e-16 58.1 13.1 1.3 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 CQR58867.1 - 7.6e-12 45.0 4.1 1.3e-11 44.2 4.1 1.3 1 0 0 1 1 1 1 Ion transport protein TrkA_N PF02254.18 CQR58867.1 - 5.8e-09 36.2 0.2 3.4e-08 33.8 0.1 2.0 1 1 1 2 2 2 2 TrkA-N domain Castor_Poll_mid PF06241.12 CQR58867.1 - 0.037 14.0 0.0 0.21 11.6 0.0 2.3 2 0 0 2 2 2 0 Castor and Pollux, part of voltage-gated ion channel DUF350 PF03994.14 CQR58868.1 - 1.2e-27 95.8 12.5 6.5e-14 51.8 2.5 2.2 2 0 0 2 2 2 2 Domain of Unknown Function (DUF350) CrgA PF06781.12 CQR58868.1 - 0.11 12.6 10.1 0.38 10.8 0.4 2.2 1 1 1 2 2 2 0 Cell division protein CrgA Dr_adhesin PF12393.8 CQR58868.1 - 0.19 12.0 1.9 0.66 10.3 0.3 2.8 2 0 0 2 2 2 0 Dr family adhesin GSP_synth PF03738.14 CQR58870.1 - 1.8e-62 211.7 0.0 2.1e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 Glutathionylspermidine synthase preATP-grasp MFS_1 PF07690.16 CQR58873.1 - 8.4e-46 156.5 52.5 2.7e-45 154.8 51.6 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily RecO_C PF02565.15 CQR58873.1 - 0.03 14.1 0.1 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 Recombination protein O C terminal Response_reg PF00072.24 CQR58874.1 - 7.4e-21 74.4 0.0 2e-20 73.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain BTAD PF03704.17 CQR58874.1 - 1.4e-13 51.5 0.7 1.4e-13 51.5 0.7 2.0 2 0 0 2 2 2 1 Bacterial transcriptional activator domain Trans_reg_C PF00486.28 CQR58874.1 - 3.1e-05 24.0 0.1 6.7e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR58875.1 - 6.1e-36 123.3 0.3 2.7e-23 82.6 0.0 2.6 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 CQR58875.1 - 2.1e-24 85.8 0.0 4.6e-24 84.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain His_kinase PF06580.13 CQR58875.1 - 7.2e-24 83.9 0.1 1.8e-23 82.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase HisKA PF00512.25 CQR58875.1 - 9.8e-12 44.7 0.0 2.9e-11 43.2 0.0 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 CQR58875.1 - 2.4e-07 30.8 0.1 0.0016 18.4 0.0 2.5 2 0 0 2 2 2 2 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 CQR58875.1 - 0.00017 21.4 0.0 0.58 10.1 0.0 2.5 2 0 0 2 2 2 2 GHKL domain 7TMR-DISM_7TM PF07695.11 CQR58875.1 - 0.00023 21.1 25.0 0.00046 20.1 25.0 1.4 1 0 0 1 1 1 1 7TM diverse intracellular signalling HATPase_c_3 PF13589.6 CQR58875.1 - 0.002 17.9 0.0 1.4 8.7 0.0 2.3 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4131 PF13567.6 CQR58875.1 - 9.5 5.8 13.1 4.4 6.9 0.8 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF4131) Xan_ur_permease PF00860.20 CQR58876.1 - 1.2e-109 366.5 50.1 1.8e-109 366.0 50.1 1.2 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.27 CQR58877.1 - 2.4e-10 40.1 0.0 3.4e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Str_synth PF03088.16 CQR58877.1 - 0.18 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Strictosidine synthase DUF3117 PF11314.8 CQR58878.1 - 0.055 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3117) DNA_pol3_alpha PF07733.12 CQR58878.1 - 0.14 11.7 0.1 0.23 11.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial DNA polymerase III alpha NTPase domain HATPase_c PF02518.26 CQR58879.1 - 1.1e-21 77.4 0.1 1.3e-21 77.2 0.1 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR58879.1 - 0.019 14.8 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SLH PF00395.20 CQR58880.1 - 8e-13 48.2 4.0 2.6e-05 24.1 0.0 3.8 3 1 0 3 3 3 2 S-layer homology domain HxlR PF01638.17 CQR58881.1 - 1.7e-39 133.5 0.1 2.1e-39 133.3 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 CQR58881.1 - 0.00031 20.6 0.0 0.00052 19.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 CQR58881.1 - 0.014 15.2 0.1 0.032 14.1 0.1 1.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PadR PF03551.14 CQR58881.1 - 0.024 14.6 0.1 0.04 13.9 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_12 PF08461.10 CQR58881.1 - 0.057 13.4 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain ISAV_HA PF06215.11 CQR58881.1 - 0.12 11.5 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Infectious salmon anaemia virus haemagglutinin MFS_1 PF07690.16 CQR58882.1 - 2.8e-47 161.4 56.2 1.5e-40 139.2 46.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR58882.1 - 5.5e-11 42.0 41.0 1.9e-08 33.6 16.3 3.0 1 1 2 3 3 3 3 Sugar (and other) transporter MFS_4 PF06779.14 CQR58882.1 - 3.3e-10 39.8 43.6 4.1e-10 39.5 43.6 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Aldo_ket_red PF00248.21 CQR58883.1 - 1.1e-50 172.6 0.1 1.2e-48 165.9 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DNA_ligase_ZBD PF03119.16 CQR58885.1 - 0.0047 16.9 0.2 0.0047 16.9 0.2 1.8 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 CQR58885.1 - 0.0066 15.9 2.1 1.6 8.3 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-RRN7 PF11781.8 CQR58885.1 - 0.01 15.5 2.1 0.62 9.8 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RNA_POL_M_15KD PF02150.16 CQR58885.1 - 0.091 12.7 4.5 8.8 6.3 0.1 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 CQR58885.1 - 0.11 12.3 1.6 3 7.6 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 CQR58885.1 - 0.13 12.2 0.7 9.1 6.3 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 CQR58885.1 - 0.16 12.1 3.6 2.8 8.1 3.6 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 CQR58885.1 - 0.19 11.6 1.9 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf_C2H2_ZHX PF18387.1 CQR58885.1 - 3 7.6 6.6 8.1 6.2 0.5 2.7 2 1 1 3 3 3 0 Zinc-fingers and homeoboxes C2H2 finger domain Y2_Tnp PF04986.13 CQR58886.1 - 2.7e-37 128.6 1.8 2.7e-37 128.6 1.8 2.1 2 0 0 2 2 2 1 Putative transposase Zn_Tnp_IS91 PF14319.6 CQR58886.1 - 5.6e-29 100.0 7.4 9.4e-29 99.3 3.7 2.5 2 0 0 2 2 2 1 Transposase zinc-binding domain MobA_MobL PF03389.15 CQR58886.1 - 0.016 14.9 0.2 0.042 13.6 0.1 1.7 1 1 0 1 1 1 0 MobA/MobL family DUF5638 PF18688.1 CQR58886.1 - 0.054 13.8 0.4 0.12 12.7 0.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5638) KH_9 PF17904.1 CQR58886.1 - 0.13 12.7 0.1 0.31 11.4 0.1 1.6 1 0 0 1 1 1 0 FMRP KH0 domain WW PF00397.26 CQR58886.1 - 3.4 7.8 7.9 0.13 12.3 0.7 2.4 3 0 0 3 3 3 0 WW domain Mem_trans PF03547.18 CQR58887.1 - 3.8e-21 74.9 33.7 2.6e-15 55.7 19.1 2.0 1 1 1 2 2 2 2 Membrane transport protein HxlR PF01638.17 CQR58888.1 - 5.8e-28 96.6 0.1 7.4e-28 96.2 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 CQR58888.1 - 0.011 15.8 0.2 0.019 15.0 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 CQR58888.1 - 0.016 15.2 0.0 0.025 14.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 CQR58888.1 - 0.02 15.0 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR PF01047.22 CQR58888.1 - 0.059 13.3 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 MarR family AbiEi_4 PF13338.6 CQR58888.1 - 0.11 12.7 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin adh_short_C2 PF13561.6 CQR58889.1 - 7.9e-42 143.4 5.2 9.7e-42 143.1 5.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR58889.1 - 4.8e-28 97.9 2.1 6e-28 97.6 2.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR58889.1 - 2.1e-08 34.3 2.1 3e-08 33.8 2.1 1.2 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 CQR58889.1 - 7.6e-07 29.2 0.9 1.3e-06 28.4 0.9 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Epimerase PF01370.21 CQR58889.1 - 3.4e-05 23.4 0.0 6.5e-05 22.5 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 CQR58889.1 - 0.00023 21.4 0.0 0.00035 20.9 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 CQR58889.1 - 0.003 18.1 0.7 0.0065 17.0 0.7 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sua5_yciO_yrdC PF01300.18 CQR58889.1 - 0.0093 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination NAD_binding_10 PF13460.6 CQR58889.1 - 0.012 15.5 4.8 0.013 15.4 3.0 1.8 1 1 1 2 2 2 0 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 CQR58889.1 - 0.019 14.3 0.1 0.029 13.7 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.8 CQR58889.1 - 0.036 13.8 2.4 0.062 13.1 1.9 1.7 1 1 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3HCDH_N PF02737.18 CQR58889.1 - 0.042 13.7 0.6 0.064 13.1 0.6 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 CQR58889.1 - 0.053 12.8 0.1 0.099 12.0 0.1 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 CQR58889.1 - 0.054 13.6 0.1 0.081 13.0 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GRDA PF04723.14 CQR58889.1 - 0.16 11.7 0.5 0.55 10.0 0.5 1.8 1 1 0 1 1 1 0 Glycine reductase complex selenoprotein A AlaDh_PNT_C PF01262.21 CQR58889.1 - 0.93 8.7 6.2 0.071 12.4 1.3 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GreA_GreB_N PF03449.15 CQR58890.1 - 5e-26 90.6 2.5 7.6e-26 90.1 2.5 1.3 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 CQR58890.1 - 5.3e-24 83.9 0.3 8.2e-24 83.3 0.3 1.3 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term Kri1 PF05178.12 CQR58890.1 - 0.22 12.1 1.7 0.33 11.5 1.7 1.3 1 0 0 1 1 1 0 KRI1-like family FAD_oxidored PF12831.7 CQR58891.1 - 6.1e-38 131.3 0.0 9.8e-38 130.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 CQR58891.1 - 0.00078 19.6 0.0 0.0031 17.7 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 CQR58891.1 - 0.017 14.4 0.1 0.053 12.8 0.1 1.7 1 1 1 2 2 2 0 Thi4 family HI0933_like PF03486.14 CQR58891.1 - 0.08 11.6 0.1 2.6 6.7 0.1 2.2 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_2 PF07992.14 CQR58891.1 - 0.081 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase MFS_1 PF07690.16 CQR58892.1 - 1.2e-48 165.9 50.9 1.2e-48 165.9 50.9 2.6 2 1 0 2 2 2 1 Major Facilitator Superfamily MarR_2 PF12802.7 CQR58893.1 - 1.8e-11 43.7 0.0 3.9e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 CQR58893.1 - 8.1e-09 35.3 0.0 1.7e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 CQR58893.1 - 9.1e-05 22.2 0.1 0.00019 21.2 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 CQR58893.1 - 0.00029 21.3 0.0 0.00052 20.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 CQR58893.1 - 0.0012 18.4 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 CQR58893.1 - 0.0016 18.4 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 CQR58893.1 - 0.0052 16.9 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 CQR58893.1 - 0.011 15.3 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 CQR58893.1 - 0.013 15.2 0.1 0.066 13.0 0.0 2.0 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain DprA_WH PF17782.1 CQR58893.1 - 0.018 15.2 0.0 0.041 14.0 0.0 1.6 2 0 0 2 2 1 0 DprA winged helix domain Mga PF05043.13 CQR58893.1 - 0.021 15.4 0.0 0.039 14.5 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_36 PF13730.6 CQR58893.1 - 0.033 14.2 0.0 0.082 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 CQR58893.1 - 0.033 14.1 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 CQR58893.1 - 0.059 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 CQR58893.1 - 0.064 13.0 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 CQR58893.1 - 0.074 12.9 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 CQR58893.1 - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 CQR58893.1 - 0.15 11.5 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 ATP-grasp_4 PF13535.6 CQR58894.1 - 7.9e-11 41.8 0.1 1.3e-09 37.8 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 CQR58894.1 - 8.6e-08 31.9 0.0 2.4e-07 30.5 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 CQR58894.1 - 0.00036 20.3 0.0 0.00066 19.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 CQR58894.1 - 0.0004 20.5 0.1 0.00081 19.5 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 CQR58894.1 - 0.0085 15.6 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 CQR58894.1 - 0.025 14.1 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Esterase PF00756.20 CQR58895.1 - 1.3e-09 38.1 0.1 1.6e-09 37.8 0.1 1.2 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 CQR58895.1 - 0.00023 20.7 0.1 0.0003 20.4 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 CQR58895.1 - 0.036 13.3 0.0 0.054 12.7 0.0 1.3 1 0 0 1 1 1 0 Serine aminopeptidase, S33 MORN_2 PF07661.13 CQR58895.1 - 0.17 12.2 1.5 41 4.9 0.3 3.8 3 0 0 3 3 3 0 MORN repeat variant GSK-3_bind PF05350.12 CQR58897.1 - 0.16 11.3 4.9 0.63 9.3 0.9 2.4 1 1 1 2 2 2 0 Glycogen synthase kinase-3 binding P53_tetramer PF07710.11 CQR58897.1 - 0.22 10.9 0.0 22 4.5 0.0 3.0 3 0 0 3 3 3 0 P53 tetramerisation motif Radical_SAM PF04055.21 CQR58898.1 - 8.1e-18 65.4 0.0 2.2e-17 64.0 0.0 1.8 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 CQR58898.1 - 4.5e-06 26.8 0.0 1.3e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 CQR58898.1 - 0.019 15.2 0.0 0.048 13.9 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain Polysacc_deac_1 PF01522.21 CQR58899.1 - 1.6e-27 95.8 0.1 4.1e-27 94.5 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase Trypan_PARP PF05887.11 CQR58899.1 - 0.00056 19.9 3.3 0.00056 19.9 3.3 2.1 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.13 CQR58899.1 - 0.048 12.2 4.2 0.079 11.4 4.2 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein DUF2635 PF10948.8 CQR58899.1 - 0.088 12.5 0.7 0.21 11.3 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2635) Tektin PF03148.14 CQR58900.1 - 0.00013 20.9 15.6 0.0018 17.1 4.2 2.1 2 0 0 2 2 2 2 Tektin family MIP-T3_C PF17749.1 CQR58900.1 - 0.0015 18.5 3.7 0.0015 18.5 3.7 2.5 2 1 0 2 2 2 1 Microtubule-binding protein MIP-T3 C-terminal region 2OG-Fe_Oxy_2 PF10014.9 CQR58900.1 - 0.002 18.0 0.2 0.003 17.4 0.2 1.3 1 0 0 1 1 1 1 2OG-Fe dioxygenase DUF812 PF05667.11 CQR58900.1 - 0.003 16.5 19.0 0.0037 16.2 19.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) BRE1 PF08647.11 CQR58900.1 - 0.0039 17.2 6.6 0.0039 17.2 6.6 3.0 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase SHE3 PF17078.5 CQR58900.1 - 0.0054 16.5 20.6 0.0085 15.8 20.5 1.4 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 Laminin_II PF06009.12 CQR58900.1 - 0.0077 16.3 11.7 0.011 15.8 4.6 2.3 1 1 1 2 2 2 1 Laminin Domain II DUF1664 PF07889.12 CQR58900.1 - 0.0089 16.1 15.0 0.26 11.4 3.2 2.3 1 1 0 2 2 2 2 Protein of unknown function (DUF1664) IFT57 PF10498.9 CQR58900.1 - 0.015 14.3 19.7 0.28 10.1 10.1 2.1 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF3450 PF11932.8 CQR58900.1 - 0.015 14.6 15.4 0.055 12.8 5.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) FliD_N PF02465.18 CQR58900.1 - 0.016 15.9 7.7 2.8 8.7 2.1 3.3 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus Phage_GPO PF05929.11 CQR58900.1 - 0.018 14.7 14.8 0.016 14.9 3.2 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF5082 PF16888.5 CQR58900.1 - 0.021 15.1 2.8 0.021 15.1 2.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) IFT20 PF14931.6 CQR58900.1 - 0.024 14.8 2.4 0.024 14.8 2.4 2.1 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 DUF1515 PF07439.11 CQR58900.1 - 0.025 14.6 4.7 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) HMMR_N PF15905.5 CQR58900.1 - 0.027 14.0 25.0 0.011 15.2 15.1 2.8 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Sec2p PF06428.11 CQR58900.1 - 0.032 14.2 1.8 0.032 14.2 1.8 3.5 1 1 1 3 3 3 0 GDP/GTP exchange factor Sec2p bZIP_2 PF07716.15 CQR58900.1 - 0.032 14.3 4.5 0.032 14.3 4.5 3.3 2 1 1 3 3 1 0 Basic region leucine zipper MPTase-PolyVal PF18818.1 CQR58900.1 - 0.04 14.0 3.8 0.033 14.2 2.3 1.7 1 1 0 1 1 1 0 Metallopeptidase superfamily domain TACC_C PF05010.14 CQR58900.1 - 0.042 13.6 19.1 0.59 9.9 17.1 2.6 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal FlaC_arch PF05377.11 CQR58900.1 - 0.043 14.2 0.8 0.043 14.2 0.8 4.0 2 1 2 4 4 3 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.8 CQR58900.1 - 0.043 14.0 2.0 0.043 14.0 2.0 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc7 PF08317.11 CQR58900.1 - 0.044 12.7 21.3 0.038 12.9 15.8 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein KxDL PF10241.9 CQR58900.1 - 0.044 14.1 13.3 1.5 9.2 4.2 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein HAUS6_N PF14661.6 CQR58900.1 - 0.05 13.2 16.2 0.095 12.3 4.4 2.1 1 1 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus GAS PF13851.6 CQR58900.1 - 0.055 12.8 21.7 2.1 7.7 9.9 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding CALCOCO1 PF07888.11 CQR58900.1 - 0.062 12.2 19.5 0.13 11.1 11.8 2.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Fez1 PF06818.15 CQR58900.1 - 0.067 13.6 19.3 0.26 11.7 18.9 2.1 1 1 0 1 1 1 0 Fez1 LemA PF04011.12 CQR58900.1 - 0.1 12.4 6.3 1.2 9.0 3.3 2.8 1 1 2 3 3 3 0 LemA family DUF4407 PF14362.6 CQR58900.1 - 0.13 11.6 6.3 0.18 11.1 6.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TPR_MLP1_2 PF07926.12 CQR58900.1 - 0.15 12.1 18.0 0.56 10.3 9.8 2.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Glutaredoxin2_C PF04399.13 CQR58900.1 - 0.18 11.7 3.5 0.33 10.8 0.3 2.5 1 1 2 3 3 3 0 Glutaredoxin 2, C terminal domain SlyX PF04102.12 CQR58900.1 - 0.19 12.3 11.8 0.88 10.2 0.7 3.8 1 1 3 4 4 4 0 SlyX PHM7_cyt PF14703.6 CQR58900.1 - 0.2 11.9 11.0 0.33 11.2 10.3 1.8 1 1 0 1 1 1 0 Cytosolic domain of 10TM putative phosphate transporter Nsp1_C PF05064.13 CQR58900.1 - 0.2 11.5 11.3 0.21 11.4 2.4 2.6 1 1 0 2 2 2 0 Nsp1-like C-terminal region NPV_P10 PF05531.12 CQR58900.1 - 0.23 11.9 6.1 7.8 7.1 0.3 3.0 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Phage_HK97_TLTM PF06120.11 CQR58900.1 - 0.25 10.5 12.8 0.35 10.0 12.8 1.1 1 0 0 1 1 1 0 Tail length tape measure protein DivIVA PF05103.13 CQR58900.1 - 0.27 11.3 15.7 0.81 9.8 6.1 2.3 2 0 0 2 2 2 0 DivIVA protein DUF3552 PF12072.8 CQR58900.1 - 0.27 10.6 22.6 0.33 10.4 9.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF4055 PF13264.6 CQR58900.1 - 0.29 11.3 6.7 2.8 8.1 0.5 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4055) SLATT_fungal PF18142.1 CQR58900.1 - 0.31 11.0 3.3 1.2 9.1 3.3 2.0 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain Mod_r PF07200.13 CQR58900.1 - 0.37 10.9 19.5 0.33 11.0 8.1 2.8 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein ABC_tran_CTD PF16326.5 CQR58900.1 - 0.37 11.1 14.4 3.6 7.9 4.2 3.1 1 1 2 3 3 3 0 ABC transporter C-terminal domain KASH_CCD PF14662.6 CQR58900.1 - 0.4 10.5 24.5 0.98 9.2 9.2 2.6 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF724 PF05266.14 CQR58900.1 - 0.5 10.2 19.0 1.8 8.4 6.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) TEX13 PF15186.6 CQR58900.1 - 0.56 9.9 11.7 0.44 10.2 3.6 2.3 1 1 1 2 2 2 0 Testis-expressed sequence 13 protein family DUF5344 PF17279.2 CQR58900.1 - 0.59 10.7 10.3 0.44 11.2 4.7 3.0 2 1 2 4 4 3 0 Family of unknown function (DUF5344) T3SSipB PF16535.5 CQR58900.1 - 0.63 10.5 8.5 5.3 7.5 2.1 2.5 1 1 2 3 3 2 0 Type III cell invasion protein SipB CENP-F_leu_zip PF10473.9 CQR58900.1 - 0.66 10.0 22.4 4.4 7.3 12.0 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4795 PF16043.5 CQR58900.1 - 0.71 9.4 20.4 24 4.4 20.3 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Med21 PF11221.8 CQR58900.1 - 0.73 10.1 16.2 0.36 11.1 0.9 2.8 1 1 2 3 3 3 0 Subunit 21 of Mediator complex DUF1192 PF06698.11 CQR58900.1 - 0.73 9.9 5.4 2.1 8.4 0.9 3.2 4 0 0 4 4 2 0 Protein of unknown function (DUF1192) Cep57_CLD_2 PF14197.6 CQR58900.1 - 0.79 9.9 19.8 15 5.8 11.8 3.0 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 ATG16 PF08614.11 CQR58900.1 - 0.84 9.8 21.7 1.3 9.2 20.5 1.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) TMPIT PF07851.13 CQR58900.1 - 0.88 8.8 17.2 1.3 8.2 5.9 2.1 1 1 1 2 2 2 0 TMPIT-like protein Trimer_CC PF08954.11 CQR58900.1 - 0.89 9.2 7.9 2.8 7.6 1.3 3.6 3 2 0 3 3 3 0 Trimerisation motif TMF_DNA_bd PF12329.8 CQR58900.1 - 0.94 9.5 25.9 1.2 9.2 5.7 3.2 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding bZIP_1 PF00170.21 CQR58900.1 - 1 9.5 19.6 0.21 11.7 4.2 3.5 2 1 0 2 2 1 0 bZIP transcription factor APG6_N PF17675.1 CQR58900.1 - 1 9.9 23.6 0.12 12.9 8.7 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region Goodbye PF17109.5 CQR58900.1 - 1.1 9.8 7.8 7.1 7.1 0.9 2.7 1 1 0 2 2 2 0 fungal STAND N-terminal Goodbye domain DUF948 PF06103.11 CQR58900.1 - 1.1 9.6 8.8 27 5.1 0.7 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Cob_adeno_trans PF01923.18 CQR58900.1 - 1.2 9.3 7.0 2 8.6 0.9 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase DHR10 PF18595.1 CQR58900.1 - 1.2 9.2 23.5 0.65 10.1 7.9 2.5 1 1 0 2 2 2 0 Designed helical repeat protein 10 domain Exonuc_VII_L PF02601.15 CQR58900.1 - 1.3 8.5 15.3 2.9 7.4 15.3 1.6 1 1 0 1 1 1 0 Exonuclease VII, large subunit Jnk-SapK_ap_N PF09744.9 CQR58900.1 - 1.3 9.2 25.3 2.9 8.1 9.8 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 DUF16 PF01519.16 CQR58900.1 - 1.6 9.3 16.2 1.6 9.3 4.3 2.6 1 1 2 3 3 2 0 Protein of unknown function DUF16 Syntaxin-6_N PF09177.11 CQR58900.1 - 1.6 9.3 13.3 20 5.8 9.0 3.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Nup54 PF13874.6 CQR58900.1 - 1.6 8.8 15.2 2.2 8.4 2.8 3.1 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 FAM76 PF16046.5 CQR58900.1 - 1.8 7.8 20.3 0.21 10.9 11.8 2.1 1 1 1 2 2 2 0 FAM76 protein Atg14 PF10186.9 CQR58900.1 - 1.9 7.5 19.6 2.7 7.0 6.0 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fib_alpha PF08702.10 CQR58900.1 - 2.2 8.5 15.2 2.2 8.4 12.2 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4200 PF13863.6 CQR58900.1 - 2.7 8.4 22.9 3 8.3 9.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) CRR7 PF12095.8 CQR58900.1 - 3.1 8.3 7.8 2.6 8.5 1.5 2.7 1 1 1 3 3 2 0 Protein CHLORORESPIRATORY REDUCTION 7 Mt_ATP-synt_D PF05873.12 CQR58900.1 - 3.6 7.4 8.5 1.4 8.7 3.4 2.4 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Snapin_Pallidin PF14712.6 CQR58900.1 - 3.8 8.0 12.7 4.5 7.8 6.0 2.6 1 1 0 2 2 2 0 Snapin/Pallidin Angiomotin_C PF12240.8 CQR58900.1 - 3.9 7.0 18.0 8.6 5.8 4.1 2.2 1 1 1 2 2 2 0 Angiomotin C terminal CENP-H PF05837.12 CQR58900.1 - 5.3 7.5 18.3 8.5 6.8 8.0 2.7 1 1 2 3 3 2 0 Centromere protein H (CENP-H) Tweety PF04906.13 CQR58900.1 - 5.7 5.5 9.7 73 1.8 9.6 2.0 1 1 0 1 1 1 0 Tweety Occludin_ELL PF07303.13 CQR58900.1 - 6.6 7.5 13.5 16 6.3 4.0 2.3 1 1 1 2 2 2 0 Occludin homology domain Cnn_1N PF07989.11 CQR58900.1 - 6.7 7.0 18.0 2 8.7 2.0 3.2 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 CpxA_peri PF16527.5 CQR58900.1 - 7.3 7.0 7.6 2.8 8.3 1.3 2.3 2 0 0 2 2 2 0 Two-component sensor protein CpxA, periplasmic domain DUF489 PF04356.12 CQR58900.1 - 7.3 6.5 11.4 6.3 6.8 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF489) YabA PF06156.13 CQR58900.1 - 8.1 7.1 19.3 1.8 9.3 3.9 2.9 1 1 2 3 3 3 0 Initiation control protein YabA Cluap1 PF10234.9 CQR58900.1 - 8.8 5.6 19.4 11 5.3 4.3 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 LMBR1 PF04791.16 CQR58900.1 - 9.4 5.0 9.0 12 4.7 9.0 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein TetR_C_14 PF17754.1 CQR58901.1 - 2.5e-25 88.6 0.5 3.5e-25 88.1 0.5 1.2 1 0 0 1 1 1 1 MftR C-terminal domain TetR_N PF00440.23 CQR58901.1 - 5.2e-14 51.8 0.5 9.9e-14 50.9 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR58901.1 - 0.02 15.1 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_7 PF02796.15 CQR58901.1 - 0.024 14.7 0.8 0.04 14.0 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 CQR58901.1 - 0.024 14.6 0.4 0.056 13.4 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1804) HTH_23 PF13384.6 CQR58901.1 - 0.065 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF3791 PF12668.7 CQR58901.1 - 0.078 13.0 0.1 0.21 11.7 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3791) HTH_29 PF13551.6 CQR58901.1 - 0.1 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix PPDK_N PF01326.19 CQR58902.1 - 6.7e-45 153.8 1.2 1.8e-30 106.4 0.6 3.2 1 1 2 3 3 3 3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 CQR58902.1 - 5.3e-24 83.7 0.8 1e-23 82.8 0.8 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PGDYG PF14083.6 CQR58902.1 - 0.03 14.6 0.1 26 5.1 0.0 3.5 3 1 0 3 3 3 0 PGDYG protein KfrA_N PF11740.8 CQR58902.1 - 0.95 10.2 5.6 0.21 12.3 0.8 2.3 3 0 0 3 3 3 0 Plasmid replication region DNA-binding N-term GIY-YIG PF01541.24 CQR58903.1 - 3.2e-09 37.0 0.1 4.5e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 GIY-YIG catalytic domain BcrAD_BadFG PF01869.20 CQR58904.1 - 2.5e-14 53.4 0.2 3.1e-14 53.1 0.2 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Epimerase PF01370.21 CQR58905.1 - 5.9e-13 48.8 0.0 9.6e-13 48.1 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR58905.1 - 1.3e-12 48.0 0.0 1.8e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR58905.1 - 2.3e-06 27.4 0.0 2.5e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 CQR58905.1 - 2.1e-05 24.1 0.0 2.9e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase 3Beta_HSD PF01073.19 CQR58905.1 - 5.6e-05 22.3 0.0 7.5e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 CQR58905.1 - 8.7e-05 21.7 0.0 0.00017 20.8 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 CQR58905.1 - 0.027 13.6 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein TetR_N PF00440.23 CQR58906.1 - 8.4e-14 51.1 0.6 1.9e-13 50.0 0.6 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF2336 PF10098.9 CQR58906.1 - 0.00077 19.0 0.2 0.0011 18.5 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2336) HTH_Tnp_1_2 PF13022.6 CQR58906.1 - 0.0039 17.3 0.1 0.0064 16.6 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_3 PF01381.22 CQR58906.1 - 0.037 14.1 0.0 0.093 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix BaxI_1 PF12811.7 CQR58907.1 - 3.9e-81 272.0 13.4 4.4e-81 271.9 13.4 1.0 1 0 0 1 1 1 1 Bax inhibitor 1 like YtpI PF14007.6 CQR58907.1 - 0.00043 20.4 5.6 0.00043 20.4 5.6 2.4 2 0 0 2 2 2 1 YtpI-like protein FA_desaturase PF00487.24 CQR58907.1 - 1.5 8.6 12.0 2.5 7.9 6.2 2.3 1 1 1 2 2 2 0 Fatty acid desaturase ABM PF03992.16 CQR58908.1 - 3.3e-08 33.5 0.1 3.9e-08 33.3 0.1 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Uma2 PF05685.12 CQR58908.1 - 0.096 12.2 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative restriction endonuclease EcsC PF12787.7 CQR58909.1 - 7.9e-74 248.4 0.1 9.1e-74 248.2 0.1 1.0 1 0 0 1 1 1 1 EcsC protein family Alanine_zipper PF11839.8 CQR58910.1 - 0.0027 18.0 0.5 0.0027 18.0 0.5 1.8 2 0 0 2 2 2 1 Alanine-zipper, major outer membrane lipoprotein NES_C_h PF18208.1 CQR58910.1 - 0.078 13.3 0.0 0.1 12.9 0.0 1.4 1 1 0 1 1 1 0 Nicking enzyme C-terminal middle helical domain SMBP PF16785.5 CQR58910.1 - 0.078 13.2 4.3 0.11 12.7 4.3 1.5 1 1 0 1 1 1 0 Small metal-binding protein B12D PF06522.11 CQR58911.1 - 0.41 10.5 1.5 1.4 8.7 0.0 2.8 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Lipase PF00151.19 CQR58911.1 - 1.3 8.2 2.2 1.9 7.7 2.2 1.1 1 0 0 1 1 1 0 Lipase SPOB_a PF14689.6 CQR58912.1 - 0.12 12.1 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain TssN PF17555.2 CQR58913.1 - 0.0044 16.5 1.8 0.0046 16.4 1.8 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssN DUF3487 PF11990.8 CQR58913.1 - 0.0058 16.5 0.1 0.0061 16.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3487) PhoR PF11808.8 CQR58913.1 - 0.0083 16.5 0.5 0.01 16.3 0.5 1.2 1 0 0 1 1 1 1 Phosphate regulon sensor protein PhoR DUF4131 PF13567.6 CQR58913.1 - 0.041 13.5 0.1 0.045 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Wzy_C PF04932.15 CQR58913.1 - 0.046 13.4 0.2 0.054 13.1 0.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase Ac76 PF05814.11 CQR58913.1 - 0.07 13.2 1.3 0.091 12.8 1.3 1.3 1 0 0 1 1 1 0 Orf76 (Ac76) DUF2207 PF09972.9 CQR58913.1 - 0.1 11.3 0.1 0.099 11.4 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ATPase_gene1 PF09527.10 CQR58913.1 - 0.43 10.8 7.4 0.51 10.5 7.4 1.1 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Sigma_reg_N PF13800.6 CQR58913.1 - 2.9 8.2 6.1 23 5.4 2.8 2.0 1 1 1 2 2 2 0 Sigma factor regulator N-terminal FAD_binding_2 PF00890.24 CQR58914.1 - 2.2e-45 155.5 2.0 4.1e-45 154.6 2.0 1.5 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 CQR58914.1 - 2.3e-14 53.6 4.6 3.9e-14 52.8 4.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FMN_bind PF04205.14 CQR58914.1 - 8.4e-14 51.9 4.1 8.4e-14 51.9 4.1 2.8 3 0 0 3 3 2 1 FMN-binding domain HI0933_like PF03486.14 CQR58914.1 - 1.6e-09 37.0 2.6 3.3e-09 36.0 2.6 1.5 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 CQR58914.1 - 8e-08 32.2 13.6 0.00012 21.8 6.5 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR58914.1 - 2.5e-07 30.2 9.5 6.3e-06 25.6 4.2 2.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 CQR58914.1 - 3.3e-07 29.8 2.1 3.3e-07 29.8 2.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 CQR58914.1 - 2.4e-06 28.0 2.1 0.0063 17.0 1.0 2.9 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 CQR58914.1 - 8.4e-06 25.1 7.0 3.3e-05 23.2 2.3 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 CQR58914.1 - 9.6e-06 25.7 3.2 2.9e-05 24.2 1.5 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GMC_oxred_N PF00732.19 CQR58914.1 - 3.6e-05 23.3 0.6 0.00012 21.5 0.0 2.1 2 0 0 2 2 2 1 GMC oxidoreductase Lycopene_cycl PF05834.12 CQR58914.1 - 0.0001 21.5 0.6 0.0042 16.2 2.5 2.7 3 1 0 3 3 3 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 CQR58914.1 - 0.00066 19.0 6.1 0.0062 15.8 5.2 2.4 2 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 CQR58914.1 - 0.0025 17.1 5.5 0.0037 16.6 1.8 2.1 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TonB_C PF03544.14 CQR58914.1 - 0.016 15.6 0.1 0.044 14.2 0.1 1.7 1 0 0 1 1 1 0 Gram-negative bacterial TonB protein C-terminal FMO-like PF00743.19 CQR58914.1 - 0.082 11.3 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like 3HCDH_N PF02737.18 CQR58914.1 - 0.11 12.4 3.1 0.86 9.5 1.0 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MerR_1 PF13411.6 CQR58915.1 - 3.2e-11 43.2 0.0 6.5e-11 42.2 0.0 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 CQR58915.1 - 5.7e-09 35.6 0.0 1.2e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein UVR PF02151.19 CQR58916.1 - 1.1e-08 34.5 1.1 2.8e-08 33.2 1.1 1.6 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 CQR58916.1 - 1.3e-07 31.8 0.2 2.5e-07 30.9 0.2 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain PI_PP_I PF18363.1 CQR58916.1 - 0.044 14.0 0.1 0.081 13.1 0.1 1.4 1 0 0 1 1 1 0 Phosphoinositide phosphatase insertion domain NmrA PF05368.13 CQR58917.1 - 4.7e-22 78.7 0.1 6.5e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 CQR58917.1 - 8.1e-20 71.5 1.7 8.1e-20 71.5 1.7 1.6 2 0 0 2 2 2 1 NAD(P)H-binding TrkA_N PF02254.18 CQR58917.1 - 1.5e-06 28.5 2.2 1.1e-05 25.7 0.2 2.2 2 0 0 2 2 2 1 TrkA-N domain 3Beta_HSD PF01073.19 CQR58917.1 - 0.00033 19.8 0.0 0.00061 18.9 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 CQR58917.1 - 0.0041 16.3 0.0 0.0059 15.8 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein KR PF08659.10 CQR58917.1 - 0.0072 16.2 0.2 0.019 14.9 0.1 1.8 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 CQR58917.1 - 0.0073 15.8 0.4 0.024 14.1 0.2 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NUDIX PF00293.28 CQR58918.1 - 6e-19 68.4 0.0 8.7e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX-like PF09296.11 CQR58918.1 - 6.3e-16 58.9 0.0 1.6e-15 57.6 0.0 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain zf-NADH-PPase PF09297.11 CQR58918.1 - 1.1e-13 50.6 3.7 1.6e-13 50.0 3.7 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 CQR58918.1 - 0.003 17.5 0.6 0.0055 16.7 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 CQR58918.1 - 0.013 15.4 2.3 0.033 14.1 2.3 1.7 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 CQR58918.1 - 0.027 14.6 1.0 0.051 13.7 1.0 1.4 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 CQR58918.1 - 0.049 13.6 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 CQR58918.1 - 0.14 12.0 2.3 3.4 7.5 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 CQR58918.1 - 0.26 11.3 3.5 0.17 11.9 1.1 1.8 2 0 0 2 2 2 0 Zinc-ribbon containing domain zf-RING_5 PF14634.6 CQR58918.1 - 0.29 11.1 2.6 0.55 10.2 2.6 1.4 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4 PF00097.25 CQR58918.1 - 0.53 10.2 1.9 1 9.3 1.9 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.6 CQR58918.1 - 0.97 9.3 4.5 0.58 10.1 2.5 1.6 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Flavodoxin_2 PF02525.17 CQR58919.1 - 2.6e-38 131.8 0.0 3.1e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 CQR58919.1 - 1.1e-12 47.9 0.0 1.4e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase MarR PF01047.22 CQR58920.1 - 1.9e-10 40.5 0.1 3.1e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR58920.1 - 4.2e-09 36.1 0.0 8.1e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 CQR58920.1 - 1e-06 28.7 0.0 3.6e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain SMC_ScpB PF04079.16 CQR58920.1 - 3.1e-05 23.7 0.2 0.0002 21.0 0.0 1.9 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_27 PF13463.6 CQR58920.1 - 0.00025 21.5 0.0 0.00057 20.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 CQR58920.1 - 0.0013 18.6 0.2 0.0026 17.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 CQR58920.1 - 0.0023 17.9 0.1 0.0054 16.7 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 CQR58920.1 - 0.033 14.0 0.1 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_34 PF13601.6 CQR58920.1 - 0.034 14.3 0.0 0.098 12.8 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain MFS_1 PF07690.16 CQR58921.1 - 4.2e-44 150.9 51.9 4.2e-44 150.9 51.9 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily ABC_tran PF00005.27 CQR58922.1 - 4.7e-14 53.1 0.0 5.3e-14 52.9 0.0 1.0 1 0 0 1 1 1 1 ABC transporter SRP54 PF00448.22 CQR58922.1 - 0.037 13.7 0.1 0.047 13.3 0.1 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 CQR58922.1 - 0.083 13.1 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 CQR58922.1 - 0.098 12.5 0.0 0.098 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR58922.1 - 0.15 12.6 0.3 0.19 12.2 0.3 1.2 1 0 0 1 1 1 0 AAA domain TetR_N PF00440.23 CQR58923.1 - 2.9e-05 23.8 0.1 8e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 CQR58923.1 - 0.0052 16.9 0.0 0.009 16.1 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_21 PF17926.1 CQR58923.1 - 0.035 14.2 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PhnA PF03831.14 CQR58924.1 - 1.9e-35 120.6 5.0 2.3e-35 120.3 5.0 1.1 1 0 0 1 1 1 1 PhnA domain PhnA_Zn_Ribbon PF08274.12 CQR58924.1 - 4.8e-16 58.4 6.1 8.2e-16 57.7 6.1 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 CQR58924.1 - 0.00027 20.4 1.5 0.00027 20.4 1.5 1.9 2 1 0 2 2 2 1 TFIIB zinc-binding UPF0547 PF10571.9 CQR58924.1 - 0.0033 17.5 7.3 0.027 14.5 0.4 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-RRN7 PF11781.8 CQR58924.1 - 0.0058 16.3 2.7 0.018 14.8 2.7 1.8 1 1 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_4 PF13717.6 CQR58924.1 - 0.0061 16.4 1.7 0.085 12.8 1.7 2.4 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 CQR58924.1 - 0.015 15.2 0.2 0.028 14.3 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HalOD2 PF18547.1 CQR58924.1 - 0.019 14.9 1.6 0.79 9.7 0.3 2.4 1 1 1 2 2 2 0 Halobacterial output domain 2 OrfB_Zn_ribbon PF07282.11 CQR58924.1 - 0.024 14.6 0.4 0.045 13.7 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 CQR58924.1 - 0.037 13.7 0.4 0.092 12.4 0.4 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DNA_ligase_ZBD PF03119.16 CQR58924.1 - 0.045 13.8 3.0 4.8 7.3 0.3 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TFIIS_C PF01096.18 CQR58924.1 - 0.069 13.0 1.8 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2318 PF10080.9 CQR58924.1 - 0.086 13.0 0.2 0.15 12.2 0.2 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-IS66 PF13005.7 CQR58924.1 - 0.13 12.7 1.3 1.8 9.0 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 CQR58924.1 - 0.14 12.2 0.6 0.14 12.2 0.6 1.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ogr_Delta PF04606.12 CQR58924.1 - 0.18 11.8 1.5 5 7.2 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF4379 PF14311.6 CQR58924.1 - 0.18 12.2 0.3 0.18 12.2 0.3 2.1 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-NADH-PPase PF09297.11 CQR58924.1 - 0.21 11.3 5.3 0.41 10.3 0.2 2.6 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-RING_7 PF02591.15 CQR58924.1 - 0.25 11.6 3.0 7.8 6.8 0.3 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain A2L_zn_ribbon PF08792.10 CQR58924.1 - 0.27 11.0 3.1 4.5 7.1 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 CQR58924.1 - 0.56 10.4 5.9 3.8 7.7 0.3 2.3 1 1 2 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 CQR58924.1 - 0.88 9.6 5.0 5.4 7.1 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 CQR58924.1 - 0.91 10.0 3.8 5 7.6 3.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar PADR1 PF08063.12 CQR58924.1 - 1.6 8.6 5.0 37 4.2 0.2 2.3 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-ribbon_3 PF13248.6 CQR58924.1 - 1.8 8.1 5.7 2 8.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Acetyltransf_1 PF00583.25 CQR58925.1 - 9.1e-12 45.2 0.1 1.1e-11 45.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR58925.1 - 1.5e-07 31.4 0.0 1.8e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 CQR58925.1 - 3.8e-06 27.1 0.0 4.6e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR58925.1 - 8.1e-06 26.6 0.0 9.6e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR58925.1 - 9.8e-06 25.9 0.1 1.5e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Chromate_transp PF02417.15 CQR58926.1 - 2.2e-70 235.8 46.1 2.2e-42 144.9 17.1 2.3 3 0 0 3 3 3 2 Chromate transporter Abi_2 PF07751.11 CQR58927.1 - 5.4e-47 160.4 6.1 8e-47 159.8 6.1 1.3 1 0 0 1 1 1 1 Abi-like protein MerR_1 PF13411.6 CQR58928.1 - 3.1e-27 94.5 0.3 3.2e-16 59.2 0.1 2.7 2 1 0 2 2 2 2 MerR HTH family regulatory protein MerR PF00376.23 CQR58928.1 - 3.6e-26 90.6 1.5 7.9e-14 51.2 0.0 3.7 4 0 0 4 4 4 2 MerR family regulatory protein HTH_3 PF01381.22 CQR58928.1 - 0.00019 21.4 0.0 0.6 10.2 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix AbiEi_4 PF13338.6 CQR58928.1 - 0.00023 21.2 0.0 0.033 14.3 0.0 3.0 3 0 0 3 3 3 1 Transcriptional regulator, AbiEi antitoxin HTH_23 PF13384.6 CQR58928.1 - 0.0058 16.4 0.4 5.1 7.0 0.0 3.2 3 0 0 3 3 3 2 Homeodomain-like domain HTH_17 PF12728.7 CQR58928.1 - 0.007 16.5 0.0 0.81 9.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1836 PF08876.11 CQR58928.1 - 0.033 14.2 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1836) HTH_28 PF13518.6 CQR58928.1 - 0.035 14.2 0.1 1 9.5 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain P22_Cro PF14549.6 CQR58928.1 - 0.054 13.3 0.3 15 5.5 0.0 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_31 PF13560.6 CQR58928.1 - 0.1 12.9 2.6 4.8 7.6 0.1 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain Abhydrolase_1 PF00561.20 CQR58929.1 - 6.9e-05 22.6 0.3 0.00014 21.7 0.3 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR58929.1 - 0.0022 18.7 1.0 0.0031 18.2 1.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family GGDEF PF00990.21 CQR58930.1 - 5.4e-46 156.3 0.4 1.2e-45 155.2 0.4 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HisKA_7TM PF16927.5 CQR58930.1 - 2.2e-16 60.6 28.5 3.2e-16 60.1 28.5 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase DAGK_cat PF00781.24 CQR58931.1 - 2.1e-33 114.6 0.1 3.4e-33 114.0 0.1 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 CQR58931.1 - 1.1e-05 24.7 0.1 3.5e-05 23.1 0.1 1.7 1 1 0 1 1 1 1 ATP-NAD kinase Fe-ADH_2 PF13685.6 CQR58931.1 - 0.043 13.5 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase UPF0180 PF03698.13 CQR58931.1 - 0.11 12.7 0.2 0.28 11.4 0.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) HGTP_anticodon PF03129.20 CQR58931.1 - 0.17 12.0 0.0 0.4 10.9 0.0 1.6 1 0 0 1 1 1 0 Anticodon binding domain Antibiotic_NAT PF02522.14 CQR58932.1 - 7.4e-78 261.3 0.1 8.5e-78 261.1 0.1 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase Peptidase_C92 PF05708.12 CQR58933.1 - 3.2e-05 24.1 0.0 0.0012 19.0 0.0 2.6 1 1 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CTP_transf_1 PF01148.20 CQR58934.1 - 1.7e-34 119.8 17.6 2.1e-34 119.5 17.6 1.1 1 0 0 1 1 1 1 Cytidylyltransferase family GFO_IDH_MocA PF01408.22 CQR58935.1 - 4.7e-30 104.9 0.3 1.1e-29 103.7 0.2 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 CQR58935.1 - 0.0059 17.2 0.0 0.019 15.5 0.0 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 CQR58935.1 - 0.021 14.8 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR58935.1 - 0.067 13.9 0.0 0.11 13.2 0.0 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain BPD_transp_1 PF00528.22 CQR58936.1 - 2e-20 73.3 20.9 2e-20 73.3 20.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR58937.1 - 7.3e-19 68.2 11.5 7.3e-19 68.2 11.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 CQR58938.1 - 8.1e-47 160.7 11.5 1.1e-46 160.2 11.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR58938.1 - 1.4e-30 107.1 9.8 2.2e-30 106.5 9.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Response_reg PF00072.24 CQR58939.1 - 8e-27 93.6 1.0 1.7e-26 92.6 0.7 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HTH_18 PF12833.7 CQR58939.1 - 1e-17 64.2 0.0 2.4e-17 62.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR58939.1 - 2.5e-13 49.8 0.0 8.7e-09 35.3 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family SesA PF17107.5 CQR58939.1 - 0.016 15.4 0.1 0.15 12.2 0.0 2.6 3 0 0 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases His_kinase PF06580.13 CQR58940.1 - 1.4e-20 73.4 2.5 1.8e-20 73.0 0.5 2.3 2 0 0 2 2 2 1 Histidine kinase HAMP PF00672.25 CQR58940.1 - 3.6e-11 43.3 2.0 5.7e-11 42.6 0.0 2.4 3 0 0 3 3 3 1 HAMP domain dCache_1 PF02743.18 CQR58940.1 - 1.8e-08 34.5 5.4 1.8e-08 34.5 5.4 1.7 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR58940.1 - 0.00011 22.7 0.0 0.00061 20.3 0.0 2.3 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 CQR58940.1 - 0.00087 19.1 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Kre28 PF17097.5 CQR58940.1 - 0.0054 15.7 0.5 0.017 14.1 0.3 1.8 1 1 1 2 2 2 1 Spindle pole body component TMEM43 PF07787.12 CQR58940.1 - 0.011 15.1 3.8 0.34 10.2 0.0 2.4 1 1 1 2 2 2 0 Transmembrane protein 43 LrgB PF04172.16 CQR58940.1 - 1.9 7.9 4.8 2.5 7.6 0.6 2.1 2 0 0 2 2 2 0 LrgB-like family Cthe_2159 PF14262.6 CQR58941.1 - 3.2e-93 311.8 77.3 1.8e-86 289.7 40.1 4.8 2 1 2 4 4 4 3 Carbohydrate-binding domain-containing protein Cthe_2159 DUF4956 PF16316.5 CQR58942.1 - 1e-16 61.1 2.5 1.4e-16 60.6 2.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4956) DUF2933 PF11666.8 CQR58942.1 - 0.023 14.7 0.2 0.049 13.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2933) Intg_mem_TP0381 PF09529.10 CQR58942.1 - 0.058 12.9 0.3 0.058 12.9 0.3 2.1 2 0 0 2 2 2 0 Integral membrane protein (intg_mem_TP0381) PHO4 PF01384.20 CQR58942.1 - 0.28 10.2 4.1 0.48 9.4 4.1 1.3 1 1 0 1 1 1 0 Phosphate transporter family VTC PF09359.10 CQR58943.1 - 1.1e-37 129.9 10.2 1.8e-37 129.2 10.2 1.3 1 1 0 1 1 1 1 VTC domain RPA_interact_N PF14766.6 CQR58943.1 - 0.18 11.5 1.2 0.41 10.3 0.2 2.2 2 0 0 2 2 2 0 Replication protein A interacting N-terminal Response_reg PF00072.24 CQR58944.1 - 7.2e-18 64.8 0.0 7.5e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ACT PF01842.25 CQR58944.1 - 0.077 12.8 0.0 0.09 12.6 0.0 1.2 1 1 0 1 1 1 0 ACT domain Trans_reg_C PF00486.28 CQR58945.1 - 2e-19 69.4 0.8 8.4e-19 67.4 0.4 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR58945.1 - 2.4e-07 30.9 0.0 4.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 CQR58946.1 - 9.6e-26 90.5 0.2 1.1e-24 87.1 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58946.1 - 1.2e-14 54.1 0.0 2.6e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 CQR58946.1 - 7.9e-07 28.9 0.4 2e-06 27.6 0.1 1.8 2 0 0 2 2 2 1 GHKL domain Response_reg PF00072.24 CQR58947.1 - 4.7e-25 87.9 0.2 8.2e-25 87.2 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR58947.1 - 9.1e-20 70.5 0.1 1.6e-19 69.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HATPase_c PF02518.26 CQR58948.1 - 9.4e-19 68.0 0.3 2.7e-18 66.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4131 PF13567.6 CQR58948.1 - 0.00083 19.1 0.3 0.0014 18.3 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) HATPase_c_3 PF13589.6 CQR58948.1 - 0.00092 19.1 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_holin_3_6 PF07332.11 CQR58948.1 - 0.022 14.8 0.6 0.039 14.0 0.6 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III HisKA PF00512.25 CQR58948.1 - 0.071 13.1 1.6 0.83 9.7 0.1 3.0 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF3426 PF11906.8 CQR58948.1 - 0.11 12.7 0.2 0.34 11.1 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3426) FtsX PF02687.21 CQR58949.1 - 2.3e-08 34.4 16.7 1.9e-06 28.2 8.8 5.8 4 1 2 6 6 6 3 FtsX-like permease family MAP17 PF15807.5 CQR58949.1 - 0.0002 21.6 1.8 0.035 14.3 0.1 3.0 3 0 0 3 3 3 2 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 ABC_tran PF00005.27 CQR58950.1 - 2.8e-30 105.6 0.0 3.8e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 CQR58950.1 - 3.6e-05 23.4 0.0 0.017 14.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 CQR58950.1 - 4.7e-05 23.4 0.2 7.8e-05 22.6 0.2 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 CQR58950.1 - 6.3e-05 22.6 0.2 0.00012 21.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 CQR58950.1 - 9.6e-05 22.3 0.3 0.055 13.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58950.1 - 0.00018 21.1 0.5 0.027 13.9 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR58950.1 - 0.00029 20.6 0.1 0.0034 17.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 CQR58950.1 - 0.0035 17.7 0.1 0.006 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 CQR58950.1 - 0.0041 17.4 0.2 0.03 14.6 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 CQR58950.1 - 0.0044 17.5 0.1 0.13 12.7 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 CQR58950.1 - 0.0054 16.5 0.0 0.37 10.4 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 CQR58950.1 - 0.0069 16.9 0.2 0.018 15.5 0.0 1.7 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 CQR58950.1 - 0.013 16.1 0.0 0.022 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR58950.1 - 0.018 15.1 0.1 0.035 14.2 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.7 CQR58950.1 - 0.047 12.6 0.0 0.095 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain ATP_bind_1 PF03029.17 CQR58950.1 - 0.061 13.1 0.2 0.14 11.9 0.2 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Rad17 PF03215.15 CQR58950.1 - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain DUF87 PF01935.17 CQR58950.1 - 0.11 12.5 0.8 0.29 11.2 0.3 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain SbcCD_C PF13558.6 CQR58950.1 - 0.12 12.6 0.1 2.2 8.6 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 CQR58950.1 - 0.15 12.5 0.0 0.35 11.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 CQR58950.1 - 0.16 12.2 0.1 0.77 10.0 0.1 2.2 1 1 1 2 2 2 0 AAA domain T2SSE PF00437.20 CQR58950.1 - 0.16 11.0 0.6 0.22 10.6 0.1 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein MFS_1 PF07690.16 CQR58951.1 - 3.2e-41 141.4 53.7 3.2e-41 141.4 53.7 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 CQR58951.1 - 3.5e-07 29.1 36.7 6.6e-05 21.6 4.5 3.5 2 1 1 3 3 3 3 MFS/sugar transport protein PsaL PF02605.15 CQR58951.1 - 0.059 13.0 0.2 0.059 13.0 0.2 2.6 4 0 0 4 4 4 0 Photosystem I reaction centre subunit XI Molybdopterin PF00384.22 CQR58952.1 - 9e-71 239.1 0.0 1.4e-70 238.4 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase FAD_binding_1 PF00667.20 CQR58952.1 - 6.4e-37 127.3 0.0 1.6e-36 126.0 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain Molydop_binding PF01568.21 CQR58952.1 - 1.5e-33 115.1 0.0 3.1e-33 114.1 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Flavodoxin_1 PF00258.25 CQR58952.1 - 7.8e-32 110.4 0.1 2.4e-31 108.9 0.1 1.8 1 0 0 1 1 1 1 Flavodoxin Molybdop_Fe4S4 PF04879.16 CQR58952.1 - 5.2e-19 68.0 1.4 1.1e-18 66.9 1.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NAD_binding_1 PF00175.21 CQR58952.1 - 7.9e-18 65.1 0.0 2.8e-17 63.3 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain DUF5329 PF17263.2 CQR58953.1 - 0.0078 16.4 0.9 0.0093 16.1 0.9 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5329) ING PF12998.7 CQR58953.1 - 0.027 15.1 4.0 0.028 15.0 4.0 1.1 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding YtxH PF12732.7 CQR58953.1 - 0.3 11.7 1.4 1 9.9 1.4 1.8 1 1 0 1 1 1 0 YtxH-like protein TMPIT PF07851.13 CQR58953.1 - 0.82 8.9 3.4 0.83 8.8 3.4 1.0 1 0 0 1 1 1 0 TMPIT-like protein Hexapep PF00132.24 CQR58954.1 - 2.4e-14 52.4 3.5 9.5e-13 47.3 1.8 2.5 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 CQR58954.1 - 1.2e-09 37.7 3.8 1.8e-09 37.2 0.7 2.1 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase APS-reductase_C PF12139.8 CQR58954.1 - 0.049 13.8 0.0 0.079 13.2 0.0 1.3 1 0 0 1 1 1 0 Adenosine-5'-phosphosulfate reductase beta subunit NTP_transferase PF00483.23 CQR58955.1 - 5.7e-31 108.0 0.0 6.7e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR58955.1 - 5.4e-10 39.9 0.0 6.9e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain TetR_C_33 PF13305.6 CQR58956.1 - 3.8e-09 37.2 0.3 9.2e-09 36.0 0.0 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 CQR58956.1 - 2e-08 33.9 0.0 3.3e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family adh_short PF00106.25 CQR58957.1 - 3.1e-46 157.3 0.0 4.2e-46 156.9 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR58957.1 - 3e-29 102.3 0.0 3.7e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR58957.1 - 6.3e-13 49.0 0.0 1.3e-12 48.0 0.0 1.4 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 CQR58957.1 - 0.0023 17.5 0.0 0.013 15.0 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 CQR58957.1 - 0.014 15.3 0.1 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H-binding Polysacc_synt_2 PF02719.15 CQR58957.1 - 0.017 14.3 0.0 0.027 13.6 0.0 1.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Sacchrp_dh_NADP PF03435.18 CQR58957.1 - 0.04 14.2 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Str_synth PF03088.16 CQR58958.1 - 2e-25 88.7 0.0 4.5e-24 84.4 0.0 2.2 2 0 0 2 2 2 1 Strictosidine synthase SGL PF08450.12 CQR58958.1 - 9.3e-20 71.2 0.1 8.4e-14 51.7 0.0 2.8 2 1 1 3 3 3 2 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 CQR58958.1 - 4.6e-07 29.6 0.0 0.44 10.7 0.0 4.8 5 0 0 5 5 5 3 NHL repeat PQQ_3 PF13570.6 CQR58958.1 - 0.0035 17.8 1.2 4.2 8.0 0.0 3.9 3 0 0 3 3 3 1 PQQ-like domain Tachylectin PF14517.6 CQR58958.1 - 0.012 15.2 0.2 0.19 11.3 0.0 2.3 2 1 0 2 2 2 0 Tachylectin DUF839 PF05787.13 CQR58958.1 - 0.048 12.8 0.3 4.7 6.2 0.0 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF839) DUF1206 PF06724.11 CQR58958.1 - 0.062 13.4 0.2 0.16 12.1 0.2 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1206) Arylesterase PF01731.20 CQR58958.1 - 0.079 13.2 0.0 0.39 11.0 0.0 2.1 2 1 0 2 2 2 0 Arylesterase Ribonuc_L-PSP PF01042.21 CQR58959.1 - 1.8e-09 37.6 0.0 2.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Endoribonuclease L-PSP His_Phos_1 PF00300.22 CQR58960.1 - 1.9e-22 79.9 0.0 2.2e-22 79.7 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) CPT PF07931.12 CQR58961.1 - 1.8e-40 138.6 0.0 2.1e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 CQR58961.1 - 1.9e-06 28.4 0.0 2.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 CQR58961.1 - 4e-05 23.8 0.0 5.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 CQR58961.1 - 0.066 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase TIP49 PF06068.13 CQR58961.1 - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain Zeta_toxin PF06414.12 CQR58961.1 - 0.12 11.6 0.0 0.46 9.7 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin TPR_2 PF07719.17 CQR58962.1 - 0.0012 18.8 2.1 0.074 13.2 0.0 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR58962.1 - 0.0026 18.0 1.5 0.02 15.1 1.5 2.1 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 CQR58962.1 - 0.018 14.8 1.0 0.034 14.0 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 CQR58962.1 - 0.045 14.1 0.7 1 9.7 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_3 PF07720.12 CQR58962.1 - 0.2 11.7 3.5 0.21 11.7 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat HTH_3 PF01381.22 CQR58963.1 - 1.8e-14 53.5 0.5 2.8e-14 52.9 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR58963.1 - 1.1e-10 41.7 0.1 1.6e-10 41.1 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR58963.1 - 3.6e-08 33.3 1.2 6.2e-08 32.5 1.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR58963.1 - 2.6e-05 24.5 0.0 5.4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 CQR58963.1 - 0.00023 20.9 0.5 0.00055 19.7 0.4 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 CQR58963.1 - 0.00057 19.8 0.7 0.0013 18.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Rad50_zn_hook PF04423.14 CQR58963.1 - 0.062 13.1 0.2 0.12 12.2 0.2 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif DUF16 PF01519.16 CQR58963.1 - 0.54 10.8 4.9 0.81 10.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 HTH_3 PF01381.22 CQR58964.1 - 4e-14 52.4 0.2 7.4e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 CQR58964.1 - 1.2e-11 44.8 0.0 2.4e-11 43.8 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR58964.1 - 8.6e-10 38.5 0.2 1.8e-09 37.5 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 CQR58964.1 - 9.1e-07 29.2 0.1 2.2e-06 28.0 0.0 1.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 CQR58964.1 - 3.8e-06 26.8 0.2 1.2e-05 25.2 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR58964.1 - 0.00035 20.4 0.2 0.0013 18.5 0.1 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain DUF1002 PF06207.11 CQR58964.1 - 0.0032 17.0 0.7 0.0034 17.0 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) DUF4447 PF14590.6 CQR58964.1 - 0.0069 16.2 0.1 0.0079 16.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4447) GyrB_insert PF18053.1 CQR58964.1 - 0.062 13.2 0.5 0.068 13.1 0.5 1.1 1 0 0 1 1 1 0 DNA gyrase B subunit insert domain HTH_3 PF01381.22 CQR58965.1 - 2.6e-17 62.6 0.3 4.5e-17 61.8 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 CQR58965.1 - 5.8e-12 45.8 0.0 7.9e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 CQR58965.1 - 7.6e-10 38.7 0.1 1.9e-09 37.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 CQR58965.1 - 1.3e-06 28.2 0.4 0.0004 20.2 0.0 2.6 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_26 PF13443.6 CQR58965.1 - 2.2e-05 24.8 0.0 5.3e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 CQR58965.1 - 0.00029 20.7 0.0 0.0013 18.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.6 CQR58965.1 - 0.05 14.2 0.2 0.19 12.3 0.1 1.9 1 1 1 2 2 2 0 Homeodomain-like domain PEP-utilizers_C PF02896.18 CQR58966.1 - 3.8e-127 423.4 0.0 6.1e-127 422.8 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 CQR58966.1 - 3e-32 111.2 0.6 3.3e-31 107.8 0.8 2.5 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 CQR58966.1 - 2.7e-22 78.3 0.8 7.9e-22 76.8 0.8 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 CQR58967.1 - 2.6e-27 94.9 0.2 2.9e-27 94.7 0.2 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site YitT_membrane PF02588.15 CQR58968.1 - 7 6.0 27.3 68 2.7 2.2 2.8 1 1 1 2 2 2 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Glyco_hydro_1 PF00232.18 CQR58969.1 - 1.3e-122 409.5 8.6 2e-122 408.9 8.6 1.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 CQR58969.1 - 4e-05 23.2 0.0 7.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) HTH_25 PF13413.6 CQR58969.1 - 0.016 15.0 0.2 0.059 13.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain PTS_IIA PF02255.16 CQR58970.1 - 1.4e-30 105.2 4.3 1.6e-30 105.0 4.3 1.1 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIA subunit YfdX PF10938.8 CQR58970.1 - 0.0055 16.6 0.8 0.021 14.7 0.5 1.8 2 0 0 2 2 2 1 YfdX protein SMBP PF16785.5 CQR58970.1 - 0.026 14.8 2.0 0.57 10.4 1.1 2.2 1 1 0 2 2 2 0 Small metal-binding protein PTS_EIIC PF02378.18 CQR58971.1 - 6.4e-24 84.6 28.8 6.4e-24 84.6 28.8 1.9 2 0 0 2 2 2 1 Phosphotransferase system, EIIC Vpu PF00558.19 CQR58971.1 - 0.11 12.2 0.1 0.64 9.8 0.1 2.4 1 0 0 1 1 1 0 Vpu protein PTS_IIB PF02302.17 CQR58972.1 - 2.8e-15 56.8 0.0 3.1e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PRD PF00874.20 CQR58973.1 - 2.1e-28 98.4 9.4 1.3e-17 63.9 0.3 3.6 3 0 0 3 3 3 2 PRD domain PTS_EIIA_2 PF00359.22 CQR58973.1 - 1e-23 83.8 0.0 3.9e-23 81.9 0.0 1.9 2 0 0 2 2 2 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HTH_11 PF08279.12 CQR58973.1 - 5.7e-12 45.4 4.7 3.8e-07 30.0 0.3 2.9 2 0 0 2 2 2 2 HTH domain Mga PF05043.13 CQR58973.1 - 6e-09 36.4 9.4 3.5e-08 33.9 1.6 3.1 3 0 0 3 3 2 1 Mga helix-turn-helix domain HTH_Mga PF08280.11 CQR58973.1 - 2.3e-05 24.4 7.4 0.0015 18.6 0.1 3.9 3 0 0 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain PuR_N PF09182.10 CQR58973.1 - 4e-05 23.5 0.9 0.22 11.5 0.1 2.7 2 0 0 2 2 2 2 Bacterial purine repressor, N-terminal GerE PF00196.19 CQR58973.1 - 0.0059 16.1 3.4 1.7 8.3 0.3 3.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_psq PF05225.16 CQR58973.1 - 0.0068 16.1 0.2 0.018 14.8 0.2 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_DeoR PF08220.12 CQR58973.1 - 0.0076 16.0 0.1 1.9 8.3 0.0 2.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Put_DNA-bind_N PF06971.13 CQR58973.1 - 0.021 14.8 1.2 0.66 10.0 0.2 3.2 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus CRIM PF16978.5 CQR58973.1 - 0.047 13.8 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 SAPK-interacting protein 1 (Sin1), middle CRIM domain HTH_36 PF13730.6 CQR58973.1 - 0.092 12.7 0.3 0.31 11.0 0.3 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 CQR58973.1 - 0.15 11.9 0.4 11 5.9 0.0 3.0 3 0 0 3 3 3 0 HTH DNA binding domain MerR_1 PF13411.6 CQR58974.1 - 2e-19 69.4 0.0 2e-19 69.4 0.0 1.7 3 0 0 3 3 3 1 MerR HTH family regulatory protein MerR PF00376.23 CQR58974.1 - 9.1e-13 47.8 0.1 2.3e-12 46.4 0.0 1.8 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 CQR58974.1 - 1.4e-05 25.6 0.3 2.7e-05 24.6 0.3 1.5 1 1 0 1 1 1 1 MerR, DNA binding APG6_N PF17675.1 CQR58974.1 - 0.017 15.7 0.3 0.019 15.5 0.3 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region Prefoldin PF02996.17 CQR58974.1 - 0.026 14.4 0.3 0.04 13.8 0.3 1.4 1 0 0 1 1 1 0 Prefoldin subunit Atg14 PF10186.9 CQR58974.1 - 0.026 13.6 0.2 0.029 13.5 0.2 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1465 PF07323.12 CQR58974.1 - 0.11 12.3 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) adh_short PF00106.25 CQR58975.1 - 3.2e-42 144.2 0.3 4.6e-42 143.7 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR58975.1 - 3e-32 112.0 0.3 3.9e-32 111.7 0.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR58975.1 - 1.7e-11 44.4 0.1 2.3e-11 44.0 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 CQR58975.1 - 0.062 12.8 0.1 0.075 12.5 0.1 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF421 PF04239.12 CQR58976.1 - 3.7e-35 120.0 1.1 5.3e-35 119.5 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF421) AHSA1 PF08327.11 CQR58977.1 - 3.3e-26 92.0 0.7 3.9e-26 91.7 0.7 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 CQR58977.1 - 0.048 13.9 1.3 0.088 13.1 1.3 1.5 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport HTH_20 PF12840.7 CQR58978.1 - 5.8e-19 67.9 0.4 9.5e-19 67.2 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR58978.1 - 1.3e-15 57.0 0.6 1.7e-15 56.6 0.1 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 CQR58978.1 - 6.8e-10 38.7 0.4 9.8e-10 38.2 0.4 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 CQR58978.1 - 2e-07 30.8 0.1 3.2e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 CQR58978.1 - 4e-06 26.5 0.2 7.3e-06 25.7 0.2 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 CQR58978.1 - 6.3e-06 25.7 0.0 1.3e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 CQR58978.1 - 1.9e-05 24.5 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR58978.1 - 0.00025 21.5 0.1 0.00044 20.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 CQR58978.1 - 0.0016 18.1 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 CQR58978.1 - 0.0017 18.5 0.1 0.0034 17.5 0.0 1.5 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 CQR58978.1 - 0.0017 18.5 0.3 0.0041 17.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR58978.1 - 0.002 18.1 0.1 0.0026 17.7 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 CQR58978.1 - 0.0021 18.4 0.0 0.0025 18.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.16 CQR58978.1 - 0.0027 17.4 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain RP-C PF03428.13 CQR58978.1 - 0.0035 17.0 0.0 0.0049 16.5 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_11 PF08279.12 CQR58978.1 - 0.014 15.3 0.0 0.025 14.5 0.0 1.5 1 1 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 CQR58978.1 - 0.017 15.0 0.2 0.07 13.0 0.0 2.2 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain HTH_40 PF14493.6 CQR58978.1 - 0.027 14.9 0.0 0.034 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 CQR58978.1 - 0.029 14.3 0.0 0.64 10.0 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_10 PF04967.12 CQR58978.1 - 0.08 12.8 0.1 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 HTH DNA binding domain MerR-DNA-bind PF09278.11 CQR58978.1 - 0.14 12.7 1.2 0.52 10.9 0.2 2.0 1 1 0 2 2 2 0 MerR, DNA binding Dimerisation2 PF16864.5 CQR58978.1 - 0.15 12.0 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain Methyltransf_25 PF13649.6 CQR58979.1 - 0.16 12.7 0.0 0.27 11.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DUF2252 PF10009.9 CQR58980.1 - 8.4e-96 321.4 0.7 9.7e-96 321.2 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2252) Imm51 PF15595.6 CQR58981.1 - 1.3e-30 105.4 0.1 3.9e-30 103.9 0.1 1.9 1 0 0 1 1 1 1 Immunity protein 51 SUKH_6 PF14568.6 CQR58981.1 - 6.1e-28 97.7 0.0 1.3e-27 96.6 0.0 1.6 1 0 0 1 1 1 1 SMI1-KNR4 cell-wall SMI1_KNR4 PF09346.10 CQR58981.1 - 3.1e-13 50.3 0.0 6.8e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) TPR_2 PF07719.17 CQR58981.1 - 5.3e-06 26.1 4.4 4.8e-05 23.2 0.5 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58981.1 - 1.4e-05 24.7 1.8 0.01 15.6 0.2 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 CQR58981.1 - 5.8e-05 23.0 2.0 0.012 15.8 0.2 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat SUKH_5 PF14567.6 CQR58981.1 - 0.00044 20.0 0.0 0.012 15.3 0.0 2.5 2 0 0 2 2 2 1 SMI1-KNR4 cell-wall TPR_14 PF13428.6 CQR58981.1 - 0.0023 18.6 5.3 0.16 12.8 0.4 3.5 2 1 1 3 3 3 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 CQR58981.1 - 0.0038 17.2 0.0 0.0076 16.3 0.0 1.5 1 0 0 1 1 1 1 Putative TPR-like repeat ANAPC3 PF12895.7 CQR58981.1 - 0.021 15.1 0.1 0.055 13.7 0.1 1.7 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 CQR58981.1 - 0.031 14.8 3.7 1.1 9.9 0.2 2.7 1 1 1 2 2 2 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 CQR58981.1 - 0.14 12.3 0.8 0.27 11.3 0.2 1.8 2 0 0 2 2 1 0 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.6 CQR58981.1 - 0.18 12.5 3.7 0.39 11.4 0.2 2.9 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 CQR58981.1 - 0.71 9.8 4.7 10 6.1 0.3 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 CQR58981.1 - 2 8.2 5.9 4.2 7.1 1.8 2.5 1 1 1 2 2 2 0 TPR repeat TPR_3 PF07720.12 CQR58981.1 - 2.1 8.4 5.2 0.65 10.1 1.1 2.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 CQR58981.1 - 2.7 8.3 8.8 16 5.8 2.5 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 CQR58981.1 - 4.6 8.0 10.8 0.19 12.4 2.3 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat HTH_AsnC-type PF13404.6 CQR58982.1 - 7.8e-16 57.6 0.0 1.1e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 CQR58982.1 - 3.7e-15 55.2 0.0 5.1e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 CQR58982.1 - 1.6e-12 47.2 0.0 3.1e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR PF01047.22 CQR58982.1 - 7.6e-07 29.0 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 CQR58982.1 - 1.6e-06 27.9 0.0 2.3e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 CQR58982.1 - 0.00026 20.9 0.0 0.00044 20.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 CQR58982.1 - 0.006 16.8 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 CQR58982.1 - 0.02 14.9 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 CQR58982.1 - 0.021 14.7 0.0 0.064 13.2 0.0 1.7 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.12 CQR58982.1 - 0.057 13.2 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF501 PF04417.12 CQR58982.1 - 0.13 12.0 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF501) TrmB PF01978.19 CQR58982.1 - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Beta-lactamase PF00144.24 CQR58983.1 - 2.1e-72 244.2 3.5 2.5e-72 243.9 3.5 1.0 1 0 0 1 1 1 1 Beta-lactamase MFS_1 PF07690.16 CQR58984.1 - 4.8e-35 121.1 59.7 2.7e-28 98.9 25.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 CQR58984.1 - 1.3e-08 34.1 23.3 5.8e-05 22.1 10.3 2.1 1 1 1 2 2 2 2 MFS_1 like family TPR_2 PF07719.17 CQR58985.1 - 4.9e-10 38.8 0.8 9.2e-07 28.5 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 CQR58985.1 - 6e-07 29.0 0.1 0.0096 15.7 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_15 PF13429.6 CQR58985.1 - 8.2e-06 25.2 0.6 3e-05 23.4 0.2 1.8 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 CQR58985.1 - 3e-05 24.5 0.5 0.11 13.3 0.1 2.7 2 1 1 3 3 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 CQR58985.1 - 0.00036 20.5 0.1 0.041 14.1 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 CQR58985.1 - 0.0011 19.5 0.4 0.033 14.8 0.2 2.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 CQR58985.1 - 0.0035 17.0 0.3 0.41 10.4 0.3 2.3 1 1 1 2 2 2 2 TPR repeat TPR_12 PF13424.6 CQR58985.1 - 0.0056 16.9 0.1 0.31 11.4 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 CQR58985.1 - 0.0059 16.8 0.1 0.011 16.0 0.0 1.5 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 CQR58985.1 - 0.0096 15.8 1.3 0.067 13.1 0.0 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 CQR58985.1 - 0.011 15.8 0.0 0.017 15.1 0.0 1.5 1 1 0 1 1 1 0 Putative TPR-like repeat TPR_19 PF14559.6 CQR58985.1 - 0.035 14.6 0.0 0.76 10.3 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat HATPase_c PF02518.26 CQR58986.1 - 8.8e-21 74.5 0.3 1.5e-20 73.8 0.3 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR58986.1 - 1.4e-12 47.5 0.0 2.5e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain 5TM-5TMR_LYT PF07694.12 CQR58986.1 - 3.5e-10 39.7 13.4 2.5e-09 36.9 13.5 2.0 1 1 0 1 1 1 1 5TMR of 5TMR-LYT HATPase_c_3 PF13589.6 CQR58986.1 - 1.2e-05 25.1 0.8 3.1e-05 23.8 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 CQR58986.1 - 7.3e-05 22.6 2.7 7.3e-05 22.6 1.1 1.8 1 1 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 CQR58986.1 - 0.0011 18.9 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3256 PF11644.8 CQR58986.1 - 0.048 13.2 0.1 0.13 11.7 0.0 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3256) Pectate_lyase_2 PF06917.12 CQR58986.1 - 0.082 11.5 0.1 0.11 11.0 0.1 1.1 1 0 0 1 1 1 0 Periplasmic pectate lyase EAL PF00563.20 CQR58987.1 - 9.4e-74 247.9 0.1 1.7e-73 247.1 0.1 1.4 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 CQR58987.1 - 2.9e-45 153.9 0.0 5.5e-45 153.0 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 CQR58987.1 - 2.9e-08 33.9 0.0 5.4e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 CQR58987.1 - 1.6e-05 24.9 0.0 4.7e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 CQR58987.1 - 0.024 14.9 0.0 0.054 13.7 0.0 1.6 1 0 0 1 1 1 0 PAS domain CRPA PF05745.11 CQR58987.1 - 1.8 8.6 4.2 1.7 8.6 2.3 2.0 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF1877 PF08974.10 CQR58988.1 - 0.00016 21.8 0.4 0.0048 17.0 0.4 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1877) DUF5381 PF17353.2 CQR58988.1 - 0.0079 16.0 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5381) SIS PF01380.22 CQR58989.1 - 1.4e-19 70.3 0.0 1.7e-08 34.4 0.0 2.2 2 0 0 2 2 2 2 SIS domain DUF3866 PF12982.7 CQR58989.1 - 0.21 10.7 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3866) Lyase_1 PF00206.20 CQR58990.1 - 7.3e-105 350.8 0.1 8.7e-105 350.5 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 CQR58990.1 - 4.8e-21 74.9 0.1 1.1e-20 73.8 0.1 1.6 1 0 0 1 1 1 1 Fumarase C C-terminus malic PF00390.19 CQR58991.1 - 4.2e-31 108.1 0.3 1.4e-28 100.0 0.3 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 CQR58991.1 - 1.8e-25 89.7 6.0 4.5e-23 81.8 6.0 2.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain ThiF PF00899.21 CQR58991.1 - 0.019 14.3 0.8 0.019 14.3 0.8 1.7 2 0 0 2 2 2 0 ThiF family ELFV_dehydrog PF00208.21 CQR58991.1 - 0.052 13.2 0.5 0.56 9.9 0.1 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MFS_1_like PF12832.7 CQR58992.1 - 2.5e-46 158.3 27.8 7.4e-46 156.7 27.8 1.6 1 1 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 CQR58992.1 - 1.2e-30 106.7 50.4 4.6e-22 78.4 31.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 CQR58992.1 - 2.2e-15 56.4 23.4 2.9e-15 56.0 23.4 1.0 1 0 0 1 1 1 1 LacY proton/sugar symporter Nuc_H_symport PF03825.16 CQR58992.1 - 6.7e-15 55.0 24.4 8e-15 54.7 24.4 1.0 1 0 0 1 1 1 1 Nucleoside H+ symporter NADH-u_ox-rdase PF10785.9 CQR58992.1 - 0.29 11.9 0.2 0.29 11.9 0.2 3.1 3 1 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Alph_Pro_TM PF09608.10 CQR58992.1 - 1.2 8.9 3.7 6.6 6.5 0.2 2.3 1 1 1 2 2 2 0 Putative transmembrane protein (Alph_Pro_TM) DUF2157 PF09925.9 CQR58992.1 - 2.9 7.7 18.4 0.12 12.2 6.8 3.1 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) BPD_transp_1 PF00528.22 CQR58993.1 - 1e-16 61.2 14.2 1.3e-16 60.9 14.2 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Bac_export_3 PF01313.19 CQR58993.1 - 0.068 13.1 0.9 0.068 13.1 0.9 3.0 4 0 0 4 4 4 0 Bacterial export proteins, family 3 BPD_transp_1 PF00528.22 CQR58994.1 - 2.5e-16 60.0 10.8 2.5e-16 60.0 10.8 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 CQR58995.1 - 4.5e-36 124.4 0.0 5.8e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR58995.1 - 5.2e-15 56.0 0.4 3.6e-07 30.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR58995.1 - 5.4e-10 39.1 0.4 1.9e-08 34.0 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 CQR58995.1 - 3.1e-06 27.5 0.1 4.8e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 CQR58995.1 - 4.3e-06 27.4 0.1 7.8e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 CQR58995.1 - 0.00016 20.6 0.6 0.68 8.7 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 CQR58995.1 - 0.00016 21.3 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR58995.1 - 0.00018 21.9 0.0 0.00031 21.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 CQR58995.1 - 0.00029 20.8 0.1 0.00057 19.9 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 CQR58995.1 - 0.00055 19.9 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 CQR58995.1 - 0.00067 19.5 0.0 0.0069 16.1 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 CQR58995.1 - 0.00069 18.8 0.0 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_28 PF13521.6 CQR58995.1 - 0.00069 19.9 0.0 0.0016 18.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 CQR58995.1 - 0.0018 18.0 0.0 0.058 13.1 0.0 2.2 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 CQR58995.1 - 0.0067 17.0 0.1 0.012 16.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 CQR58995.1 - 0.0089 16.5 0.2 0.39 11.1 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 CQR58995.1 - 0.0093 16.3 0.0 0.014 15.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 CQR58995.1 - 0.0098 15.3 0.3 0.18 11.1 0.3 2.1 1 1 0 1 1 1 1 KaiC AAA_14 PF13173.6 CQR58995.1 - 0.012 15.6 0.0 0.6 10.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR58995.1 - 0.013 15.2 0.2 0.045 13.5 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 CQR58995.1 - 0.014 15.5 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 CQR58995.1 - 0.016 15.5 1.0 0.38 11.0 0.7 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 CQR58995.1 - 0.024 14.4 0.0 0.083 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 CQR58995.1 - 0.028 14.3 0.1 0.099 12.5 0.0 1.8 1 1 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 CQR58995.1 - 0.029 14.3 0.1 0.066 13.1 0.1 1.6 1 0 0 1 1 1 0 NACHT domain Adeno_IVa2 PF02456.15 CQR58995.1 - 0.04 12.7 0.1 0.14 11.0 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein G-alpha PF00503.20 CQR58995.1 - 0.041 13.0 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit CobU PF02283.16 CQR58995.1 - 0.044 13.4 0.8 0.68 9.5 0.0 2.4 2 1 1 3 3 3 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Mg_chelatase PF01078.21 CQR58995.1 - 0.05 13.0 0.1 0.4 10.0 0.0 2.2 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 CQR58995.1 - 0.051 13.2 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 CQR58995.1 - 0.071 12.7 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 CQR58995.1 - 0.081 12.4 0.2 0.97 8.8 0.0 2.5 2 1 1 3 3 3 0 PhoH-like protein AAA_5 PF07728.14 CQR58995.1 - 0.1 12.6 0.1 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 CQR58995.1 - 0.12 11.6 0.2 0.18 11.0 0.2 1.5 1 1 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 CQR58995.1 - 0.12 12.5 0.1 0.29 11.2 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase cobW PF02492.19 CQR58995.1 - 0.12 11.9 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 CQR58995.1 - 0.16 10.6 0.0 3 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain SBP_bac_3 PF00497.20 CQR58996.1 - 2.5e-49 167.7 0.1 2.9e-49 167.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 CQR58996.1 - 3e-08 33.9 0.1 0.0092 15.9 0.1 2.2 1 1 1 2 2 2 2 NMT1/THI5 like Lig_chan-Glu_bd PF10613.9 CQR58996.1 - 0.00035 20.8 0.0 0.00055 20.1 0.0 1.4 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1_3 PF16868.5 CQR58996.1 - 0.031 13.7 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family Phosphonate-bd PF12974.7 CQR58996.1 - 0.097 12.3 0.1 0.26 10.9 0.1 1.5 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein LPAM_2 PF13627.6 CQR58996.1 - 0.54 10.2 4.7 1.2 9.1 4.7 1.6 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site DUF3558 PF12079.8 CQR58996.1 - 2.1 8.3 6.2 3.3 7.7 6.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) UPF0047 PF01894.17 CQR58997.1 - 1.1e-34 119.0 0.0 1.3e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Glycoprot_B_PH2 PF17417.2 CQR58997.1 - 0.05 13.9 0.0 0.085 13.2 0.0 1.4 1 1 0 1 1 1 0 Herpesvirus Glycoprotein B PH-like domain MetallophosN PF16371.5 CQR58997.1 - 0.21 11.8 1.8 8.4 6.7 0.1 2.3 2 0 0 2 2 2 0 N terminal of Calcineurin-like phosphoesterase Amidohydro_2 PF04909.14 CQR58998.1 - 2.1e-39 136.1 0.0 2.7e-39 135.7 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase PfkB PF00294.24 CQR58999.1 - 4.5e-31 108.3 0.1 1.1e-21 77.4 0.0 2.0 2 0 0 2 2 2 2 pfkB family carbohydrate kinase UTRA PF07702.13 CQR59000.1 - 4e-33 114.2 0.0 6e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 CQR59000.1 - 1.5e-21 75.8 0.1 2.9e-21 74.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 CQR59000.1 - 2.8e-05 23.7 0.0 6.8e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR59000.1 - 0.0028 17.6 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 CQR59000.1 - 0.0089 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix AbiEi_4 PF13338.6 CQR59000.1 - 0.014 15.5 0.0 0.042 14.0 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin ANT PF03374.14 CQR59000.1 - 0.018 15.4 0.0 0.27 11.6 0.0 2.2 2 1 0 2 2 2 0 Phage antirepressor protein KilAC domain HTH_36 PF13730.6 CQR59000.1 - 0.025 14.5 0.0 0.071 13.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 CQR59000.1 - 0.027 14.4 0.0 0.057 13.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 CQR59000.1 - 0.048 13.2 0.1 0.14 11.7 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 CQR59000.1 - 0.055 13.3 0.0 0.74 9.7 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 CQR59000.1 - 0.08 13.3 0.1 0.35 11.3 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_17 PF12728.7 CQR59000.1 - 0.088 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 CQR59000.1 - 0.16 12.5 0.0 0.34 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 CQR59000.1 - 0.21 11.4 1.8 0.31 10.9 0.0 2.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain MFS_1 PF07690.16 CQR59001.1 - 1.6e-60 204.9 60.8 4.4e-49 167.3 36.9 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR59001.1 - 2.2e-12 46.6 13.4 2.2e-12 46.6 13.4 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 CQR59001.1 - 4.1e-09 35.8 27.9 1e-05 24.6 13.2 2.9 1 1 1 2 2 2 2 MFS_1 like family PUCC PF03209.15 CQR59001.1 - 0.00011 21.4 15.6 0.001 18.2 6.2 2.8 2 1 1 3 3 3 2 PUCC protein TRI12 PF06609.13 CQR59001.1 - 0.0038 15.7 6.2 0.0043 15.5 6.2 1.2 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) DUF3464 PF11947.8 CQR59001.1 - 7.1 6.4 5.3 1.7 8.4 1.8 1.7 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 Flavodoxin_2 PF02525.17 CQR59002.1 - 1e-19 71.1 0.3 1.1e-19 70.9 0.3 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold HxlR PF01638.17 CQR59003.1 - 1.1e-34 118.2 0.3 1.3e-34 117.9 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 CQR59003.1 - 0.054 13.4 0.2 0.094 12.7 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.22 CQR59003.1 - 0.11 12.5 0.2 0.17 11.9 0.2 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 CQR59004.1 - 6.7e-14 51.6 0.0 1.1e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 CQR59004.1 - 2.4e-07 31.2 0.0 3.7e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 CQR59004.1 - 6.8e-07 29.1 0.0 9.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 CQR59004.1 - 6.1e-05 22.5 0.2 0.0001 21.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PBECR5 PF18814.1 CQR59004.1 - 0.00014 21.9 0.7 0.00015 21.8 0.7 1.1 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5 PadR PF03551.14 CQR59004.1 - 0.0013 18.7 0.1 0.0022 17.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 CQR59004.1 - 0.0027 18.1 0.1 0.004 17.5 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.6 CQR59004.1 - 0.0027 17.8 0.4 0.0081 16.3 0.2 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 CQR59004.1 - 0.0037 17.1 0.1 0.0061 16.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 CQR59004.1 - 0.011 15.6 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_45 PF14947.6 CQR59004.1 - 0.014 15.4 0.2 0.028 14.4 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4423 PF14394.6 CQR59004.1 - 0.026 14.2 0.1 0.038 13.7 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 CQR59004.1 - 0.026 14.4 0.4 0.092 12.6 0.1 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit Rrf2 PF02082.20 CQR59004.1 - 0.028 14.7 0.0 0.069 13.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF1495 PF07381.11 CQR59004.1 - 0.039 13.8 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4795 PF16043.5 CQR59004.1 - 0.18 11.4 2.5 0.33 10.5 2.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) AP_endonuc_2 PF01261.24 CQR59005.1 - 1.5e-31 109.5 0.1 2e-31 109.1 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 CQR59005.1 - 0.0012 18.6 0.1 0.006 16.3 0.0 2.2 2 0 0 2 2 2 1 AP endonuclease family 2 C terminus Hormone_3 PF00159.18 CQR59005.1 - 0.069 13.2 0.0 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 Pancreatic hormone peptide DUF1471 PF07338.13 CQR59005.1 - 0.099 12.6 0.1 11 6.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) AP_endonuc_2 PF01261.24 CQR59006.1 - 2.7e-20 72.7 0.2 3.8e-20 72.2 0.2 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 CQR59006.1 - 0.069 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus GFO_IDH_MocA PF01408.22 CQR59007.1 - 6.6e-33 114.1 0.1 1.2e-32 113.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 CQR59007.1 - 1.8e-08 34.4 0.0 3.9e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 CQR59007.1 - 8.4e-05 23.2 0.3 0.00017 22.2 0.3 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 CQR59007.1 - 0.0057 17.2 0.0 0.015 15.9 0.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ox_reductase_C PF08635.10 CQR59007.1 - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain HTH_18 PF12833.7 CQR59008.1 - 1.2e-22 80.0 1.4 2.4e-22 79.0 1.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 CQR59008.1 - 1.8e-18 66.2 0.4 1.1e-08 34.9 0.2 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 CQR59008.1 - 6.7e-17 61.7 0.5 1.1e-16 61.0 0.5 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 CQR59008.1 - 3.7e-09 36.2 0.1 7.2e-09 35.2 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.7 CQR59008.1 - 0.0073 16.0 0.2 2.8 7.6 0.0 2.2 2 0 0 2 2 2 2 Cupin AraC_binding_2 PF14525.6 CQR59008.1 - 0.017 14.8 0.0 0.029 14.1 0.0 1.6 1 1 0 1 1 1 0 AraC-binding-like domain HTH_Crp_2 PF13545.6 CQR59008.1 - 0.051 13.6 0.2 0.18 11.8 0.2 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain AIM24 PF01987.17 CQR59009.1 - 9.1e-33 113.8 1.0 1.2e-32 113.4 1.0 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MerR_1 PF13411.6 CQR59010.1 - 1e-05 25.5 0.2 5.3e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_17 PF12728.7 CQR59010.1 - 8.2e-05 22.7 0.0 0.00027 21.1 0.0 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain RWP-RK PF02042.15 CQR59010.1 - 0.0033 17.4 0.2 0.018 15.0 0.1 2.2 2 0 0 2 2 2 1 RWP-RK domain HTH_DeoR PF08220.12 CQR59010.1 - 0.028 14.2 1.3 0.26 11.1 0.1 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 CQR59010.1 - 0.033 14.0 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain Phage_terminase PF10668.9 CQR59010.1 - 0.042 13.9 0.1 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 Phage terminase small subunit ROS_MUCR PF05443.11 CQR59010.1 - 0.08 13.0 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein Hpr_kinase_C PF07475.12 CQR59011.1 - 1.7e-58 196.9 0.0 2.1e-58 196.6 0.0 1.1 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain Hpr_kinase_N PF02603.16 CQR59011.1 - 1.1e-37 128.8 0.0 1.8e-37 128.1 0.0 1.3 1 0 0 1 1 1 1 HPr Serine kinase N terminus PTS_EIIC PF02378.18 CQR59012.1 - 1.2e-28 100.0 25.9 1.2e-28 100.0 25.9 1.7 1 1 0 1 1 1 1 Phosphotransferase system, EIIC PTS_EIIB PF00367.20 CQR59012.1 - 5.1e-08 32.3 0.2 8.5e-08 31.6 0.2 1.4 1 0 0 1 1 1 1 phosphotransferase system, EIIB PRD PF00874.20 CQR59013.1 - 1e-30 105.9 6.0 9.2e-25 86.8 3.0 2.4 2 0 0 2 2 2 2 PRD domain CAT_RBD PF03123.15 CQR59013.1 - 2.5e-21 75.4 2.0 4.6e-21 74.5 2.0 1.4 1 0 0 1 1 1 1 CAT RNA binding domain Glyco_hydro_68 PF02435.16 CQR59014.1 - 7.4e-150 499.5 7.7 8.9e-150 499.2 7.7 1.0 1 0 0 1 1 1 1 Levansucrase/Invertase Herpes_U5 PF05999.11 CQR59014.1 - 0.076 11.7 0.0 0.097 11.4 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus U5-like family Glyco_hydro_32N PF00251.20 CQR59015.1 - 3.7e-79 266.5 4.9 4.8e-79 266.1 4.9 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 CQR59015.1 - 4e-27 95.1 0.1 6.3e-27 94.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF1080 PF06439.11 CQR59015.1 - 0.071 13.2 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1080) Mqo PF06039.15 CQR59016.1 - 3e-236 784.7 0.0 3.4e-236 784.5 0.0 1.0 1 0 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) DAO PF01266.24 CQR59016.1 - 5.3e-10 39.4 0.0 7.6e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 CQR59016.1 - 0.0047 16.1 0.0 0.77 8.8 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 CQR59016.1 - 0.018 14.3 0.0 0.23 10.7 0.0 2.0 2 0 0 2 2 2 0 FAD binding domain NAD_binding_8 PF13450.6 CQR59016.1 - 0.037 14.3 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 CQR59016.1 - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Thi4 family Glyco_transf_8 PF01501.20 CQR59017.1 - 5e-30 104.9 4.3 7.3e-30 104.4 4.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 8 Glyco_transf_24 PF18404.1 CQR59017.1 - 4.6e-07 29.5 0.4 7.3e-07 28.9 0.4 1.2 1 0 0 1 1 1 1 Glucosyltransferase 24 NTP_transferase PF00483.23 CQR59018.1 - 6.7e-37 127.4 0.0 8.5e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 CQR59018.1 - 1.7e-10 41.5 0.0 2.3e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 CQR59018.1 - 0.00045 19.8 0.1 0.0017 18.0 0.1 2.0 2 0 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 CQR59018.1 - 0.00049 19.2 0.0 0.00062 18.8 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase Acetyltransf_1 PF00583.25 CQR59019.1 - 5.9e-20 71.7 0.0 1.1e-12 48.2 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 CQR59019.1 - 2.3e-16 59.9 0.0 7.3e-08 32.4 0.0 2.9 2 1 1 3 3 3 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR59019.1 - 1.1e-13 51.4 0.1 2.8e-07 30.9 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 CQR59019.1 - 6.8e-10 39.8 0.0 7.5e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR59019.1 - 2.9e-09 36.8 0.0 1.3e-06 28.3 0.0 2.4 2 0 0 2 2 2 2 FR47-like protein Acetyltransf_9 PF13527.7 CQR59019.1 - 2.7e-07 30.7 0.0 0.00049 20.2 0.0 3.2 2 2 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 CQR59019.1 - 7.3e-05 22.8 0.0 0.15 12.2 0.0 2.4 2 0 0 2 2 2 2 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 CQR59019.1 - 0.0033 17.1 0.0 0.013 15.2 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 CQR59019.1 - 0.097 12.1 0.0 1.7 8.0 0.0 2.3 1 1 0 1 1 1 0 Putative acetyl-transferase SLH PF00395.20 CQR59020.1 - 2.5e-32 110.6 0.2 1.5e-14 53.7 0.1 4.1 3 0 0 3 3 3 3 S-layer homology domain Mor PF08765.11 CQR59020.1 - 0.16 12.0 0.0 0.47 10.5 0.0 1.7 1 0 0 1 1 1 0 Mor transcription activator family DinB_2 PF12867.7 CQR59021.1 - 9.5e-20 71.4 0.2 1.2e-19 71.1 0.2 1.1 1 0 0 1 1 1 1 DinB superfamily DUF1569 PF07606.11 CQR59021.1 - 1.2e-06 28.6 0.4 0.004 17.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1569) Peptidase_M56 PF05569.11 CQR59022.1 - 7.2e-44 150.2 0.0 9e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 BlaR1 peptidase M56 TNF PF00229.18 CQR59022.1 - 0.058 13.4 0.0 0.17 11.9 0.0 1.7 1 1 0 2 2 2 0 TNF(Tumour Necrosis Factor) family Peptidase_M48 PF01435.18 CQR59022.1 - 0.1 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M48 Abhydrolase_1 PF00561.20 CQR59023.1 - 6.5e-08 32.5 0.0 8.1e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CQR59023.1 - 7.9e-06 26.6 0.0 1e-05 26.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 CQR59023.1 - 0.00067 19.8 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.8 CQR59023.1 - 0.0022 17.3 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 adh_short_C2 PF13561.6 CQR59024.1 - 2.7e-55 187.5 0.1 3.2e-55 187.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR59024.1 - 1.9e-49 167.8 0.1 2.3e-49 167.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR59024.1 - 2.3e-10 40.7 0.0 3.5e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 CQR59024.1 - 0.007 15.8 0.0 0.0089 15.4 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) RNase_PH PF01138.21 CQR59024.1 - 0.095 13.2 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 3' exoribonuclease family, domain 1 Glyco_tran_WecB PF03808.13 CQR59024.1 - 0.12 12.3 0.1 0.9 9.5 0.1 2.0 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family Epimerase PF01370.21 CQR59024.1 - 0.15 11.5 0.2 0.23 10.9 0.2 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Response_reg PF00072.24 CQR59025.1 - 5.7e-31 107.0 0.0 1e-30 106.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR59025.1 - 3e-17 61.9 0.1 6.8e-17 60.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HisKA_3 PF07730.13 CQR59025.1 - 2.3e-12 47.3 0.5 2.3e-12 47.3 0.5 2.6 3 0 0 3 3 3 1 Histidine kinase HATPase_c PF02518.26 CQR59025.1 - 4.3e-07 30.4 0.0 2.2e-05 24.9 0.0 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_23 PF13384.6 CQR59025.1 - 1.6e-05 24.6 0.1 0.00019 21.1 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 CQR59025.1 - 2.1e-05 24.1 0.1 7.9e-05 22.3 0.1 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 CQR59025.1 - 0.00049 19.6 0.1 0.001 18.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HATPase_c_2 PF13581.6 CQR59025.1 - 0.00059 19.8 0.0 0.0017 18.3 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HTH_40 PF14493.6 CQR59025.1 - 0.00074 19.9 0.2 0.0024 18.3 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 CQR59025.1 - 0.0035 17.2 0.3 0.0081 16.1 0.3 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 CQR59025.1 - 0.0043 16.8 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 CQR59025.1 - 0.0062 16.0 1.6 0.014 14.9 0.6 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.6 CQR59025.1 - 0.022 14.8 0.0 0.055 13.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Nod1 PF17114.5 CQR59025.1 - 0.026 14.7 0.2 0.048 13.8 0.2 1.4 1 0 0 1 1 1 0 Gef2-related medial cortical node protein Nod1 HTH_28 PF13518.6 CQR59025.1 - 0.071 13.3 0.0 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 CQR59025.1 - 0.078 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ABC_tran PF00005.27 CQR59026.1 - 2.4e-29 102.6 0.1 4.6e-29 101.7 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR59026.1 - 1.8e-12 47.7 3.1 2.8e-08 33.9 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR59026.1 - 0.0023 17.4 0.1 2 7.8 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 CQR59026.1 - 0.0027 17.5 0.1 0.0048 16.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 CQR59026.1 - 0.0057 16.4 0.1 0.31 10.7 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 CQR59026.1 - 0.012 15.2 0.1 0.024 14.3 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF4162 PF13732.6 CQR59026.1 - 0.017 15.9 0.1 4.8 8.0 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) Rad17 PF03215.15 CQR59026.1 - 0.018 15.0 0.1 0.047 13.6 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_22 PF13401.6 CQR59026.1 - 0.033 14.5 0.3 0.18 12.1 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 CQR59026.1 - 0.05 13.9 0.9 0.099 13.0 0.3 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 CQR59026.1 - 0.051 14.1 0.1 0.092 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR59026.1 - 0.069 12.9 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR59026.1 - 0.11 12.9 0.0 0.19 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 CQR59026.1 - 0.13 12.7 0.1 0.46 10.9 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CLP1_P PF16575.5 CQR59026.1 - 0.15 11.8 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 CQR59026.1 - 0.48 10.3 2.5 0.77 9.6 0.3 2.2 2 1 0 2 2 2 0 NTPase ABC2_membrane_4 PF12730.7 CQR59027.1 - 1e-15 58.2 10.8 1.2e-12 48.2 9.2 2.6 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR59027.1 - 5.1e-11 42.4 14.1 1.2e-10 41.2 14.1 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR59027.1 - 2.3e-07 30.2 10.3 3.1e-07 29.8 10.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2705 PF10920.8 CQR59027.1 - 0.0025 17.2 3.4 0.0025 17.2 3.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2705) ABC2_membrane_5 PF13346.6 CQR59027.1 - 0.034 13.7 19.8 0.0081 15.7 14.6 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein Herpes_US9 PF06072.11 CQR59027.1 - 3.2 7.7 7.7 0.72 9.8 0.3 2.8 2 1 0 2 2 2 0 Alphaherpesvirus tegument protein US9 DUF4097 PF13349.6 CQR59028.1 - 3.6e-07 29.8 5.9 6.1e-07 29.0 5.3 1.7 1 1 0 1 1 1 1 Putative adhesin DUF4969 PF16339.5 CQR59028.1 - 0.043 14.2 1.5 0.3 11.4 0.2 2.6 2 2 0 2 2 2 0 Domain of unknown function (DUF4969) HATPase_c PF02518.26 CQR59029.1 - 7.2e-21 74.8 0.0 1.2e-20 74.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR59029.1 - 2.8e-11 43.3 0.1 6.7e-11 42.1 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 CQR59029.1 - 0.0016 18.4 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 CQR59029.1 - 0.0076 16.1 0.1 0.014 15.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1418 PF07214.12 CQR59029.1 - 1.9 8.4 3.9 7.2 6.5 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) Phage_holin_3_6 PF07332.11 CQR59029.1 - 3.4 7.8 8.9 13 5.9 1.5 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Response_reg PF00072.24 CQR59030.1 - 9.2e-24 83.8 0.0 1.3e-23 83.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR59030.1 - 3.4e-20 71.9 0.1 6.9e-20 70.9 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Peptidase_M23 PF01551.22 CQR59031.1 - 6.6e-20 71.1 0.6 1.8e-19 69.8 0.6 1.7 1 0 0 1 1 1 1 Peptidase family M23 DUF3887 PF13026.6 CQR59031.1 - 0.00022 21.9 0.0 0.00048 20.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) Biotin_lipoyl_2 PF13533.6 CQR59031.1 - 0.0015 18.3 1.1 0.06 13.2 0.5 2.5 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 CQR59031.1 - 0.024 14.5 1.6 2.3 8.1 0.2 2.4 2 0 0 2 2 2 0 Biotin-requiring enzyme RnfC_N PF13375.6 CQR59031.1 - 0.088 12.8 0.1 0.48 10.4 0.0 2.1 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain HTH_20 PF12840.7 CQR59035.1 - 2.5e-10 40.3 0.0 3.3e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR59035.1 - 3.3e-10 39.6 0.3 5.2e-10 39.0 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 CQR59035.1 - 0.0052 16.5 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 CQR59035.1 - 0.013 15.4 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 CQR59035.1 - 0.014 15.0 0.1 0.027 14.0 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HxlR PF01638.17 CQR59035.1 - 0.024 14.5 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.6 CQR59035.1 - 0.031 14.5 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain SMC_ScpB PF04079.16 CQR59035.1 - 0.041 13.5 0.0 0.057 13.0 0.0 1.3 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB BLACT_WH PF17778.1 CQR59035.1 - 0.1 12.6 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain LexA_DNA_bind PF01726.16 CQR59035.1 - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain MFS_1 PF07690.16 CQR59036.1 - 7.9e-38 130.3 65.5 3.6e-36 124.8 52.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 CQR59036.1 - 1.2e-07 31.0 19.9 1.2e-07 31.0 19.9 3.1 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_4 PF06779.14 CQR59036.1 - 0.01 15.2 41.4 0.014 14.7 41.4 1.2 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 CQR59036.1 - 0.087 11.7 37.7 0.0049 15.8 18.6 2.1 1 1 1 2 2 2 0 MFS_1 like family Cu_amine_oxidN1 PF07833.11 CQR59037.1 - 4.7e-24 84.7 0.1 1.7e-23 82.9 0.0 2.0 2 0 0 2 2 2 1 Copper amine oxidase N-terminal domain NLPC_P60 PF00877.19 CQR59037.1 - 1.2e-23 83.2 0.0 2.1e-23 82.3 0.0 1.5 1 0 0 1 1 1 1 NlpC/P60 family Peptidase_C92 PF05708.12 CQR59037.1 - 1.5e-05 25.2 0.1 0.00022 21.4 0.0 2.2 2 0 0 2 2 2 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH3_3 PF08239.11 CQR59037.1 - 3.8e-05 23.9 0.0 0.00012 22.2 0.0 1.9 1 0 0 1 1 1 1 Bacterial SH3 domain SH3_4 PF06347.13 CQR59037.1 - 0.0032 17.2 0.0 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial SH3 domain SH3_1 PF00018.28 CQR59037.1 - 0.15 11.7 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 SH3 domain AA_permease PF00324.21 CQR59038.1 - 1.6e-106 356.8 41.4 1.8e-106 356.6 41.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 CQR59038.1 - 4.1e-47 161.0 46.9 4.8e-47 160.7 46.9 1.0 1 0 0 1 1 1 1 Amino acid permease SLATT_1 PF18181.1 CQR59038.1 - 4.1 7.3 5.4 54 3.7 0.8 3.4 3 1 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 AAA_28 PF13521.6 CQR59039.1 - 6.1e-33 114.4 0.8 9.4e-33 113.8 0.8 1.3 1 0 0 1 1 1 1 AAA domain CTP_transf_like PF01467.26 CQR59039.1 - 3.2e-05 24.2 1.1 0.00017 21.8 0.2 2.6 2 2 1 3 3 3 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 CQR59039.1 - 0.00058 19.6 0.0 0.0023 17.7 0.0 1.9 2 0 0 2 2 2 1 Citrate lyase ligase C-terminal domain AAA_18 PF13238.6 CQR59039.1 - 0.0026 18.3 0.0 0.0052 17.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 CQR59039.1 - 0.0087 16.1 0.0 0.043 13.9 0.0 2.1 3 0 0 3 3 3 1 Dynamin family FAD_syn PF06574.12 CQR59039.1 - 0.012 15.5 0.0 0.057 13.3 0.0 2.0 2 0 0 2 2 2 0 FAD synthetase MMR_HSR1 PF01926.23 CQR59039.1 - 0.029 14.4 0.0 0.071 13.2 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP-sulfurylase PF01747.17 CQR59039.1 - 0.083 12.4 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 ATP-sulfurylase Roc PF08477.13 CQR59039.1 - 0.088 13.0 0.1 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase HIGH_NTase1 PF05636.11 CQR59039.1 - 0.097 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase DUF2709 PF10915.8 CQR59039.1 - 0.12 11.6 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2709) TaqI_C PF12950.7 CQR59039.1 - 0.14 12.3 0.1 4.2 7.5 0.0 2.4 2 0 0 2 2 2 0 TaqI-like C-terminal specificity domain NMN_transporter PF04973.12 CQR59040.1 - 4.7e-46 156.9 19.5 4.7e-46 156.9 19.5 1.5 2 0 0 2 2 2 1 Nicotinamide mononucleotide transporter 2TM PF13239.6 CQR59040.1 - 0.03 14.6 4.0 0.03 14.6 4.0 2.8 2 1 0 2 2 2 0 2TM domain SLATT_fungal PF18142.1 CQR59040.1 - 1.1 9.3 3.9 0.44 10.5 0.7 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain HisKA PF00512.25 CQR59042.1 - 2.6e-15 56.2 0.3 2.6e-15 56.2 0.3 2.5 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 CQR59042.1 - 1.3e-14 54.7 0.1 4.1e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 CQR59042.1 - 0.00045 20.2 0.1 0.00082 19.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 CQR59042.1 - 0.042 13.7 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 GHKL domain ABC2_membrane_4 PF12730.7 CQR59043.1 - 2.9e-09 37.1 2.6 2.9e-09 37.1 2.6 1.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 CQR59043.1 - 3.8e-07 29.7 14.8 1.1e-06 28.2 14.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 CQR59043.1 - 4.3e-07 29.4 17.9 4.3e-07 29.4 17.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 CQR59044.1 - 6.1e-30 104.5 0.0 1.2e-29 103.6 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CQR59044.1 - 4.8e-15 56.2 0.5 3.4e-08 33.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CQR59044.1 - 0.0019 17.7 0.1 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CQR59044.1 - 0.0024 17.6 0.1 0.0043 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 CQR59044.1 - 0.011 16.3 0.6 0.026 15.0 0.3 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 CQR59044.1 - 0.018 15.3 1.1 0.53 10.6 0.4 2.7 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.6 CQR59044.1 - 0.033 13.9 0.0 0.06 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CQR59044.1 - 0.052 13.5 0.2 0.091 12.7 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 CQR59044.1 - 0.06 12.9 0.0 1.6 8.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 CQR59044.1 - 0.14 11.8 0.4 0.96 9.1 0.2 2.0 2 0 0 2 2 2 0 AAA ATPase domain TetR_C_14 PF17754.1 CQR59044.1 - 0.15 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 MftR C-terminal domain Trans_reg_C PF00486.28 CQR59045.1 - 7.2e-25 86.9 0.0 1.3e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 CQR59045.1 - 1.1e-24 86.7 0.0 2.1e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 CQR59045.1 - 0.058 12.9 0.4 0.56 9.8 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family OmdA PF13376.6 CQR59046.1 - 7e-14 51.6 0.1 1.2e-13 50.8 0.1 1.4 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated ABC_tran_2 PF16949.5 CQR59047.1 - 5.1e-05 22.3 47.1 0.0058 15.5 45.5 2.5 1 1 1 2 2 2 1 Putative ATP-binding cassette ABC2_membrane PF01061.24 CQR59047.1 - 0.00048 19.6 8.5 0.00048 19.6 8.5 4.5 2 2 1 4 4 4 1 ABC-2 type transporter ABC_tran PF00005.27 CQR59048.1 - 8.2e-26 91.2 0.0 1.1e-25 90.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR59048.1 - 3.6e-14 53.3 0.2 1.9e-08 34.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 CQR59048.1 - 0.0019 18.7 0.2 0.0024 18.4 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 CQR59048.1 - 0.0022 17.8 0.2 0.85 9.3 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 CQR59048.1 - 0.029 14.1 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 CQR59048.1 - 0.039 13.7 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 CQR59048.1 - 0.05 14.0 0.1 0.17 12.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 CQR59048.1 - 0.092 13.0 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 CQR59048.1 - 0.097 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 CQR59048.1 - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 CQR59048.1 - 0.18 12.0 0.1 0.35 11.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain Peripla_BP_3 PF13377.6 CQR59049.1 - 5.5e-29 101.6 0.0 7.8e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 CQR59049.1 - 1.6e-21 77.0 0.0 2.3e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family GntR PF00392.21 CQR59049.1 - 2.8e-19 68.5 0.0 5.2e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Peripla_BP_4 PF13407.6 CQR59049.1 - 1.3e-15 57.7 0.0 1.9e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain HTH_11 PF08279.12 CQR59049.1 - 0.0003 20.7 0.0 0.00074 19.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 CQR59049.1 - 0.0011 19.2 0.0 0.0029 17.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 CQR59049.1 - 0.0077 16.0 0.0 0.019 14.7 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 CQR59049.1 - 0.039 13.9 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 CQR59049.1 - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix FGGY_C PF02782.16 CQR59050.1 - 1.1e-36 126.5 0.3 3.8e-36 124.7 0.2 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 CQR59050.1 - 1.6e-12 47.6 0.0 2.2e-11 43.8 0.0 2.2 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Aldolase_II PF00596.21 CQR59051.1 - 4.3e-45 153.9 0.1 5.1e-45 153.7 0.1 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Arabinose_Isome PF02610.15 CQR59052.1 - 1.6e-168 560.5 5.2 1.9e-168 560.3 5.2 1.0 1 0 0 1 1 1 1 L-arabinose isomerase Arabinose_Iso_C PF11762.8 CQR59052.1 - 4.8e-44 148.8 0.0 1.5e-43 147.2 0.0 1.9 2 0 0 2 2 2 1 L-arabinose isomerase C-terminal domain PGM1_C PF18105.1 CQR59052.1 - 0.043 13.3 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 PGM1 C-terminal domain Acetyltransf_1 PF00583.25 CQR59053.1 - 2.7e-11 43.7 0.0 3.2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 CQR59053.1 - 6.7e-10 39.8 0.0 9.2e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 CQR59053.1 - 4.5e-09 36.6 0.0 6.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 CQR59053.1 - 6.2e-08 32.6 0.0 1e-07 32.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 CQR59053.1 - 0.0069 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 CQR59053.1 - 0.0076 16.4 0.0 0.015 15.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 CQR59053.1 - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Ank_4 PF13637.6 CQR59054.1 - 4e-22 78.3 0.0 8.8e-07 29.4 0.0 5.4 5 0 0 5 5 5 4 Ankyrin repeats (many copies) Ank_2 PF12796.7 CQR59054.1 - 1.9e-16 60.4 0.3 4.5e-09 36.8 0.0 2.4 2 0 0 2 2 2 2 Ankyrin repeats (3 copies) Ank_3 PF13606.6 CQR59054.1 - 8.4e-16 56.5 0.1 3.1e-05 24.0 0.0 5.5 5 0 0 5 5 5 3 Ankyrin repeat Ank PF00023.30 CQR59054.1 - 1.4e-08 34.8 0.9 0.002 18.5 0.0 3.9 4 0 0 4 4 4 2 Ankyrin repeat Ank_5 PF13857.6 CQR59054.1 - 1.6e-06 28.3 0.3 9.4e-05 22.6 0.0 3.0 2 1 0 2 2 2 1 Ankyrin repeats (many copies) BtpA PF03437.15 CQR59054.1 - 0.035 13.5 0.0 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 BtpA family PGA_cap PF09587.10 CQR59054.1 - 0.055 12.9 0.4 0.27 10.6 0.1 2.1 3 0 0 3 3 3 0 Bacterial capsule synthesis protein PGA_cap PDDEXK_2 PF12784.7 CQR59055.1 - 5.1e-57 193.0 0.0 6.5e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase DUF2802 PF10975.8 CQR59055.1 - 0.015 15.4 2.3 0.046 13.9 2.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) Corona_RPol_N PF06478.13 CQR59055.1 - 0.026 13.5 0.0 0.036 13.1 0.0 1.1 1 0 0 1 1 1 0 Coronavirus RPol N-terminus Rx_N PF18052.1 CQR59055.1 - 0.045 14.0 0.6 0.081 13.2 0.6 1.3 1 0 0 1 1 1 0 Rx N-terminal domain Beta-lactamase PF00144.24 CQR59056.1 - 3.7e-63 213.8 1.3 6e-63 213.1 1.3 1.3 1 0 0 1 1 1 1 Beta-lactamase DUF1648 PF07853.11 CQR59057.1 - 3.4e-06 26.6 0.2 3.4e-06 26.6 0.2 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) PIG-P PF08510.12 CQR59057.1 - 0.014 15.3 0.5 0.014 15.3 0.5 3.1 3 1 0 3 3 3 0 PIG-P YbhQ PF11076.8 CQR59057.1 - 0.014 15.4 0.3 0.014 15.4 0.3 2.8 4 0 0 4 4 4 0 Putative inner membrane protein YbhQ Pox_P21 PF05313.12 CQR59057.1 - 1.6 8.3 6.0 0.42 10.2 0.2 2.7 3 0 0 3 3 3 0 Poxvirus P21 membrane protein GntR PF00392.21 CQR59058.1 - 1.9e-17 62.6 0.1 8.6e-17 60.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family E3_binding PF02817.17 CQR59058.1 - 0.00085 19.6 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 e3 binding domain Fe_dep_repress PF01325.19 CQR59058.1 - 0.003 17.7 0.0 0.0049 17.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_41 PF14502.6 CQR59058.1 - 0.0031 17.2 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RepL PF05732.11 CQR59058.1 - 0.008 15.6 0.0 0.0096 15.4 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.6 CQR59058.1 - 0.0091 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 CQR59058.1 - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 CQR59058.1 - 0.038 14.3 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_24 PF13412.6 CQR59058.1 - 0.093 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.13 CQR59058.1 - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain MerR_2 PF13591.6 CQR59058.1 - 0.13 12.1 0.3 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 MerR HTH family regulatory protein GSDH PF07995.11 CQR59061.1 - 1.6e-09 37.6 0.0 4.1e-09 36.2 0.0 1.7 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Peptidase_S8 PF00082.22 CQR59063.1 - 2.6e-56 191.1 1.7 4e-56 190.5 1.7 1.3 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 CQR59063.1 - 0.051 14.2 0.0 0.13 13.0 0.0 1.8 1 0 0 1 1 1 0 Peptidase inhibitor I9 NPCBM PF08305.11 CQR59064.1 - 8.1e-14 52.0 0.2 1.1e-13 51.6 0.2 1.2 1 0 0 1 1 1 1 NPCBM/NEW2 domain Cu_amine_oxidN1 PF07833.11 CQR59064.1 - 1.3e-06 28.8 0.0 1.9e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Copper amine oxidase N-terminal domain TetR_N PF00440.23 CQR59066.1 - 1.1e-13 50.8 0.0 2.2e-13 49.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_1 PF02909.17 CQR59066.1 - 1.7e-13 50.6 0.0 2.7e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 CQR59066.1 - 0.038 14.1 0.1 0.058 13.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase MatE PF01554.18 CQR59067.1 - 6.1e-41 139.8 49.0 1.9e-21 76.4 15.7 3.1 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 CQR59067.1 - 6.5e-06 26.3 16.2 6.5e-06 26.3 16.2 4.7 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain YbgT_YccB PF08173.11 CQR59067.1 - 0.38 10.9 3.4 7.9 6.7 0.1 3.8 3 0 0 3 3 3 0 Membrane bound YbgT-like protein FlxA PF14282.6 CQR59068.1 - 0.00025 21.0 2.1 0.00035 20.5 2.1 1.1 1 0 0 1 1 1 1 FlxA-like protein FliT PF05400.13 CQR59068.1 - 0.044 14.6 1.4 0.067 14.0 1.4 1.2 1 0 0 1 1 1 0 Flagellar protein FliT Response_reg PF00072.24 CQR59069.1 - 6.5e-26 90.7 0.1 1.3e-25 89.7 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HTH_AraC PF00165.23 CQR59069.1 - 3.7e-17 62.0 1.2 1.4e-10 41.0 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR59069.1 - 9.3e-17 61.1 0.1 3.8e-16 59.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain GGDEF_2 PF17853.1 CQR59069.1 - 0.0011 19.2 0.1 0.007 16.6 0.0 2.4 2 0 0 2 2 2 1 GGDEF-like domain His_kinase PF06580.13 CQR59070.1 - 1.7e-25 89.2 2.3 1.7e-25 89.2 2.3 2.3 2 0 0 2 2 2 1 Histidine kinase dCache_1 PF02743.18 CQR59070.1 - 5.6e-17 62.4 9.5 5.6e-17 62.4 9.5 2.0 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 CQR59070.1 - 0.00031 21.2 0.1 0.0013 19.2 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SUD-M PF11633.8 CQR59070.1 - 0.036 13.7 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Single-stranded poly(A) binding domain HATPase_c_2 PF13581.6 CQR59070.1 - 0.06 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain BPD_transp_1 PF00528.22 CQR59071.1 - 1.9e-14 53.8 21.8 1.9e-14 53.8 21.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 CQR59072.1 - 2.8e-18 66.3 13.6 2.8e-18 66.3 13.6 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ferlin_C PF16165.5 CQR59072.1 - 0.049 13.6 0.5 0.11 12.4 0.5 1.6 1 0 0 1 1 1 0 Ferlin C-terminus SBP_bac_1 PF01547.25 CQR59073.1 - 2.5e-26 93.4 8.0 3.9e-26 92.7 8.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 CQR59073.1 - 8.7e-25 88.1 5.8 1.3e-24 87.5 5.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2844 PF11005.8 CQR59073.1 - 0.024 14.7 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2844) DUF3427 PF11907.8 CQR59073.1 - 0.049 12.9 0.1 0.089 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3427) Glyco_hydro_32N PF00251.20 CQR59074.1 - 3.5e-30 105.6 6.9 5.3e-30 105.0 6.9 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain DUF4975 PF16346.5 CQR59074.1 - 2.3e-19 70.1 0.0 3.5e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4975) Glyco_hydro_43 PF04616.14 CQR59074.1 - 2.1e-08 33.8 3.5 3.6e-08 33.1 3.5 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hydro_32C PF08244.12 CQR59074.1 - 2.9e-06 27.4 0.0 4.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Glyco_hydro_68 PF02435.16 CQR59074.1 - 0.012 14.5 1.4 0.091 11.6 0.0 2.7 2 1 1 3 3 3 0 Levansucrase/Invertase Methyltransf_11 PF08241.12 CQR59075.1 - 0.12 13.0 0.0 0.21 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain BBE PF08031.12 CQR59076.1 - 1.9e-22 79.1 1.9 2.6e-22 78.7 1.9 1.2 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.10 CQR59076.1 - 0.0063 15.9 0.1 0.0074 15.7 0.1 1.1 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding ALO PF04030.14 CQR59076.1 - 0.058 13.2 0.1 0.06 13.2 0.1 1.1 1 0 0 1 1 1 0 D-arabinono-1,4-lactone oxidase adh_short_C2 PF13561.6 CQR59077.1 - 1.7e-38 132.5 0.0 2.1e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR59077.1 - 3e-25 88.8 0.0 4.8e-25 88.2 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 CQR59077.1 - 2e-05 24.2 0.0 4.4e-05 23.1 0.0 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 CQR59077.1 - 0.00032 20.7 0.1 0.00056 19.9 0.1 1.4 1 1 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.8 CQR59077.1 - 0.012 15.3 0.2 0.026 14.3 0.2 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TrkA_N PF02254.18 CQR59077.1 - 0.031 14.5 0.0 0.053 13.8 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain FAD_oxidored PF12831.7 CQR59077.1 - 0.14 11.4 1.1 0.2 11.0 1.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 CQR59077.1 - 0.14 12.6 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding MLTR_LBD PF17765.1 CQR59078.1 - 1.6e-44 152.0 0.0 3.7e-44 150.8 0.0 1.6 1 0 0 1 1 1 1 MmyB-like transcription regulator ligand binding domain HTH_31 PF13560.6 CQR59078.1 - 1.6e-15 57.2 7.3 5.6e-15 55.4 7.3 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR59078.1 - 0.032 14.3 0.0 0.096 12.8 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix TetR_N PF00440.23 CQR59079.1 - 4.6e-07 29.5 0.0 8.1e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HAD_2 PF13419.6 CQR59079.1 - 0.0065 16.6 1.0 0.012 15.7 0.3 1.7 1 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HTH_17 PF12728.7 CQR59079.1 - 0.0094 16.1 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 CQR59079.1 - 0.041 14.0 0.1 0.08 13.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 CQR59079.1 - 0.045 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_22 PF13309.6 CQR59079.1 - 0.052 13.6 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain GP3_package PF16677.5 CQR59079.1 - 0.096 12.8 0.9 0.32 11.2 0.1 2.3 2 1 0 2 2 2 0 DNA-packaging protein gp3 HTH_Tnp_1_2 PF13022.6 CQR59079.1 - 0.11 12.7 1.7 0.12 12.5 0.2 1.9 2 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_11 PF08279.12 CQR59079.1 - 0.12 12.4 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain adh_short_C2 PF13561.6 CQR59080.1 - 1.3e-57 195.0 0.5 1.6e-57 194.7 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR59080.1 - 1.3e-49 168.4 0.4 1.5e-49 168.1 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CQR59080.1 - 1.2e-14 54.6 0.1 1.8e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 CQR59080.1 - 6.7e-05 22.4 0.0 9e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Sensor PF13796.6 CQR59080.1 - 0.0014 18.7 0.4 0.0022 18.0 0.4 1.4 1 0 0 1 1 1 1 Putative sensor THF_DHG_CYH_C PF02882.19 CQR59080.1 - 0.0088 15.4 0.2 0.027 13.8 0.0 1.9 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 CQR59080.1 - 0.015 14.7 2.2 0.16 11.4 1.5 2.4 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.8 CQR59080.1 - 0.025 14.3 0.3 0.068 12.9 0.3 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Shikimate_DH PF01488.20 CQR59080.1 - 0.025 14.6 0.2 0.06 13.4 0.1 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 CQR59080.1 - 0.12 12.2 0.6 0.29 11.0 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ribosomal_L12 PF00542.19 CQR59080.1 - 0.14 12.6 0.5 14 6.1 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain RhaT PF06379.12 CQR59081.1 - 0.013 14.8 0.1 0.014 14.6 0.1 1.0 1 0 0 1 1 1 0 L-rhamnose-proton symport protein (RhaT) Transglut_core PF01841.19 CQR59081.1 - 0.13 12.7 0.1 0.14 12.6 0.1 1.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily adh_short PF00106.25 CQR59082.1 - 2e-23 82.9 0.0 5.5e-16 58.6 0.0 2.2 2 0 0 2 2 2 2 short chain dehydrogenase adh_short_C2 PF13561.6 CQR59082.1 - 3.8e-14 52.8 0.0 8.9e-13 48.3 0.0 2.2 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 CQR59082.1 - 1.9e-05 24.3 0.0 2.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 CQR59082.1 - 0.00027 20.9 0.0 0.00054 19.9 0.0 1.5 1 0 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 CQR59082.1 - 0.17 11.0 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DUF4386 PF14329.6 CQR59083.1 - 2.7e-42 145.0 22.3 3e-42 144.9 22.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) DUF1761 PF08570.10 CQR59083.1 - 0.016 15.5 3.9 0.016 15.5 3.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1761) Amastin PF07344.11 CQR59083.1 - 0.054 13.4 7.0 0.058 13.2 2.9 2.4 2 1 0 2 2 2 0 Amastin surface glycoprotein TMEM40 PF15817.5 CQR59083.1 - 0.33 10.7 4.7 0.11 12.3 1.3 1.9 2 0 0 2 2 2 0 Transmembrane protein 40 family Microcin PF03526.13 CQR59083.1 - 0.39 10.6 2.5 0.76 9.6 0.1 2.6 2 0 0 2 2 2 0 Colicin E1 (microcin) immunity protein HTH_AraC PF00165.23 CQR59084.1 - 3.7e-19 68.3 2.1 1.8e-08 34.2 0.3 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_18 PF12833.7 CQR59084.1 - 1e-16 61.0 0.8 2.3e-16 59.8 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Vault_3 PF17795.1 CQR59085.1 - 0.13 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Major Vault Protein Repeat domain Peptidase_S51 PF03575.17 CQR59086.1 - 6.8e-06 25.9 0.0 9.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 PS_pyruv_trans PF04230.13 CQR59086.1 - 0.12 12.2 0.0 0.27 11.1 0.0 1.5 1 1 1 2 2 2 0 Polysaccharide pyruvyl transferase Nore1-SARAH PF16517.5 CQR59087.1 - 0.013 15.4 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain UPF0254 PF06787.11 CQR59087.1 - 0.026 14.3 0.0 0.026 14.3 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0254) WYL PF13280.6 CQR59088.1 - 1.6e-31 109.7 1.1 2.1e-31 109.3 1.1 1.1 1 0 0 1 1 1 1 WYL domain HTH_11 PF08279.12 CQR59088.1 - 1e-14 54.2 0.1 3.6e-14 52.4 0.1 1.9 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR59088.1 - 1.8e-05 24.4 0.0 4.9e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR59088.1 - 0.00041 20.6 0.1 0.00081 19.7 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Phage_Nu1 PF07471.12 CQR59088.1 - 0.16 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 Glyoxalase PF00903.25 CQR59090.1 - 1.2e-12 48.2 0.1 1.4e-12 47.9 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 CQR59090.1 - 1.3e-07 31.5 0.0 1.7e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 CQR59090.1 - 1.2e-05 26.1 0.0 1.6e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain CppA_N PF14506.6 CQR59090.1 - 0.049 13.7 0.0 0.1 12.7 0.0 1.5 1 1 0 1 1 1 0 CppA N-terminal PAP2_3 PF14378.6 CQR59091.1 - 2.4e-06 27.4 12.1 2.8e-06 27.1 11.2 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 CQR59091.1 - 2.7e-05 24.0 6.6 2.7e-05 24.0 6.6 2.2 1 1 1 2 2 2 2 PAP2 superfamily EVE PF01878.18 CQR59092.1 - 0.00028 20.9 0.0 0.00032 20.7 0.0 1.0 1 0 0 1 1 1 1 EVE domain DUF4062 PF13271.6 CQR59093.1 - 4.2e-20 71.9 0.1 1.1e-19 70.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4062) DUF3384 PF11864.8 CQR59093.1 - 0.044 12.7 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3384) Mto2_bdg PF12808.7 CQR59093.1 - 3.3 8.1 5.8 0.6 10.4 2.1 1.7 2 0 0 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region Peptidase_U32 PF01136.19 CQR59094.1 - 6e-79 264.5 0.9 1.1e-67 227.6 0.1 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 CQR59094.1 - 1.7e-16 60.8 0.1 1.2e-15 58.1 0.0 2.4 2 0 0 2 2 2 1 Collagenase DSBA PF01323.20 CQR59095.1 - 4.1e-46 157.2 0.1 4.6e-46 157.0 0.1 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 CQR59095.1 - 3.1e-10 40.5 0.4 0.0001 22.5 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_3 PF13192.6 CQR59095.1 - 0.0098 15.9 0.0 3.6 7.7 0.0 2.6 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin_5 PF13743.6 CQR59095.1 - 0.02 14.5 0.3 0.092 12.4 0.0 1.9 2 0 0 2 2 2 0 Thioredoxin HTH_35 PF13693.6 CQR59095.1 - 0.12 12.4 0.0 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NAD_binding_10 PF13460.6 CQR59096.1 - 1.3e-32 113.1 0.1 1.5e-32 113.0 0.1 1.0 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 CQR59096.1 - 5.2e-11 42.5 0.0 1.2e-10 41.4 0.0 1.5 2 1 0 2 2 2 1 NmrA-like family Epimerase PF01370.21 CQR59096.1 - 4.4e-06 26.3 0.0 5.5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 CQR59096.1 - 1.8e-05 25.0 0.1 4.4e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 CQR59096.1 - 0.0011 19.5 0.3 0.0025 18.3 0.1 1.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 CQR59096.1 - 0.0036 16.9 0.2 0.011 15.4 0.2 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 CQR59096.1 - 0.0038 17.7 0.1 0.0082 16.6 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 CQR59096.1 - 0.0079 16.3 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 3Beta_HSD PF01073.19 CQR59096.1 - 0.021 13.9 0.0 0.038 13.0 0.0 1.6 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_2 PF03446.15 CQR59096.1 - 0.026 14.7 0.0 0.071 13.3 0.0 1.7 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase RmlD_sub_bind PF04321.17 CQR59096.1 - 0.12 11.4 0.1 0.23 10.5 0.0 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain adh_short PF00106.25 CQR59097.1 - 7.2e-28 97.4 0.0 8.8e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR59097.1 - 5.5e-18 65.4 0.0 6.5e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR59097.1 - 6.4e-07 29.5 0.0 1.1e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 CQR59097.1 - 0.00015 21.7 0.1 0.00021 21.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 CQR59097.1 - 0.0011 18.3 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 CQR59097.1 - 0.0024 17.9 0.1 0.0035 17.4 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 CQR59097.1 - 0.0044 17.0 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 CQR59097.1 - 0.0051 17.1 0.2 0.0086 16.3 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 CQR59097.1 - 0.019 15.2 0.0 0.078 13.2 0.0 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Polysacc_synt_2 PF02719.15 CQR59097.1 - 0.028 13.6 0.1 0.077 12.1 0.1 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_2 PF03446.15 CQR59097.1 - 0.029 14.6 0.0 0.054 13.7 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.13 CQR59097.1 - 0.029 13.9 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family ApbA PF02558.16 CQR59097.1 - 0.057 13.1 0.1 0.084 12.5 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CoA_binding_2 PF13380.6 CQR59097.1 - 0.083 13.4 0.4 0.61 10.6 0.1 2.4 2 1 1 3 3 3 0 CoA binding domain NAD_binding_10 PF13460.6 CQR59097.1 - 0.18 11.7 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding TetR_C_8 PF14278.6 CQR59098.1 - 1e-14 54.5 0.4 2.2e-14 53.4 0.4 1.6 1 0 0 1 1 1 1 Transcriptional regulator C-terminal region TetR_N PF00440.23 CQR59098.1 - 1.7e-10 40.5 0.0 4.9e-10 39.0 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 CQR59098.1 - 0.00018 21.6 0.1 0.00058 20.0 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix of insertion element transposase SPECT1 PF18680.1 CQR59098.1 - 0.026 14.2 1.0 0.033 13.9 1.0 1.3 1 0 0 1 1 1 0 Plasmodium host cell traversal SPECT1 TetR_C_24 PF17932.1 CQR59098.1 - 0.057 13.7 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain adh_short_C2 PF13561.6 CQR59099.1 - 3.8e-17 62.6 0.0 4.5e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CQR59099.1 - 3.6e-05 23.3 0.0 4.4e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Peptidase_S51 PF03575.17 CQR59100.1 - 4.7e-06 26.4 0.0 6.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 PS_pyruv_trans PF04230.13 CQR59100.1 - 0.13 12.2 0.0 0.3 11.0 0.0 1.5 1 1 0 1 1 1 0 Polysaccharide pyruvyl transferase Nore1-SARAH PF16517.5 CQR59101.1 - 0.013 15.4 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain UPF0254 PF06787.11 CQR59101.1 - 0.026 14.3 0.0 0.026 14.3 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0254) WYL PF13280.6 CQR59102.1 - 3.1e-31 108.8 1.1 3.1e-31 108.8 1.1 1.5 2 0 0 2 2 2 1 WYL domain HTH_11 PF08279.12 CQR59102.1 - 1.7e-15 56.7 0.1 5.8e-15 55.0 0.1 1.9 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 CQR59102.1 - 4.5e-06 26.3 0.0 1.3e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 CQR59102.1 - 0.00013 22.2 0.3 0.00041 20.7 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator Phage_Nu1 PF07471.12 CQR59102.1 - 0.032 14.0 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Phage DNA packaging protein Nu1 HTH_29 PF13551.6 CQR59102.1 - 0.057 13.4 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_20 PF12840.7 CQR59102.1 - 0.071 13.2 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Glyoxalase PF00903.25 CQR59103.1 - 3.7e-11 43.3 0.1 4.4e-11 43.1 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 CQR59103.1 - 4.5e-07 29.8 0.0 5.8e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 CQR59103.1 - 3.1e-06 27.9 0.0 4e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain CppA_N PF14506.6 CQR59103.1 - 0.11 12.6 0.0 0.26 11.3 0.0 1.6 1 1 1 2 2 2 0 CppA N-terminal PAP2_3 PF14378.6 CQR59105.1 - 2.4e-06 27.4 12.1 2.8e-06 27.1 11.2 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 CQR59105.1 - 2.7e-05 24.0 6.6 2.7e-05 24.0 6.6 2.2 1 1 1 2 2 2 1 PAP2 superfamily Ac76 PF05814.11 CQR59105.1 - 6.2 6.9 5.6 1.9 8.5 0.1 2.7 3 0 0 3 3 3 0 Orf76 (Ac76) EVE PF01878.18 CQR59107.1 - 3.1e-17 62.9 0.0 3.7e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 EVE domain SASA PF03629.18 CQR59108.1 - 7.1e-53 179.6 0.0 9.3e-53 179.2 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate esterase, sialic acid-specific acetylesterase DUF3067 PF11267.8 CQR59108.1 - 0.044 14.4 0.3 0.18 12.4 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3067) MLTR_LBD PF17765.1 CQR59110.1 - 5.2e-27 95.0 0.0 8e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 MmyB-like transcription regulator ligand binding domain HTH_31 PF13560.6 CQR59110.1 - 3.9e-16 59.2 0.2 7e-16 58.3 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 CQR59110.1 - 7e-07 29.2 0.0 1.3e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CQR59110.1 - 0.04 13.9 0.0 0.095 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain adh_short PF00106.25 CQR59111.1 - 2.7e-50 170.6 0.0 3.4e-50 170.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 CQR59111.1 - 2.1e-31 109.3 0.1 2.6e-31 109.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 CQR59111.1 - 5.4e-11 42.7 0.1 8.1e-11 42.2 0.1 1.2 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 CQR59111.1 - 0.0016 18.4 0.1 0.45 10.5 0.1 2.4 2 1 0 2 2 2 2 Zinc-binding dehydrogenase ApbA PF02558.16 CQR59111.1 - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 CQR59111.1 - 0.013 15.4 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Shikimate_DH PF01488.20 CQR59111.1 - 0.077 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 CQR59111.1 - 0.12 11.8 0.2 0.29 10.6 0.2 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family SPOUT_MTase PF02590.17 CQR59112.1 - 3.6e-56 189.4 0.1 4e-56 189.3 0.1 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase IF3_N PF05198.16 CQR59113.1 - 3.5e-15 56.0 0.0 6.8e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain IF3_C PF00707.22 CQR59113.1 - 1.2e-11 44.4 0.1 1.7e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain ADH_zinc_N PF00107.26 CQR59113.1 - 0.013 15.5 1.0 1.2 9.1 1.0 2.2 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF4367 PF14285.6 CQR59114.1 - 0.0036 17.7 3.4 0.0037 17.7 2.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4367) Sigma70_r2 PF04542.14 CQR59115.1 - 3.1e-16 58.9 0.1 1.2e-15 57.0 0.0 2.0 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CQR59115.1 - 1.1e-08 34.6 1.4 1.1e-08 34.6 1.4 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR59115.1 - 0.00024 20.5 0.8 0.00051 19.5 0.8 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 CQR59115.1 - 0.019 14.9 1.3 0.072 13.0 1.3 1.8 1 1 0 1 1 1 0 ECF sigma factor Surfac_D-trimer PF09006.11 CQR59115.1 - 0.033 14.1 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation Jag_N PF14804.6 CQR59115.1 - 0.044 14.1 0.0 0.074 13.4 0.0 1.3 1 0 0 1 1 1 0 Jag N-terminus GlutR_dimer PF00745.20 CQR59115.1 - 0.051 14.0 4.6 0.49 10.9 0.5 2.8 2 1 1 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain Glyoxalase PF00903.25 CQR59116.1 - 9.4e-10 38.8 0.0 1.4e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 CQR59116.1 - 0.029 14.3 0.0 0.046 13.6 0.0 1.4 1 1 0 1 1 1 0 Glyoxalase-like domain Glyoxalase_4 PF13669.6 CQR59116.1 - 0.14 12.4 0.0 0.31 11.3 0.0 1.8 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HTH_20 PF12840.7 CQR59117.1 - 4.1e-08 33.2 0.0 1.2e-07 31.7 0.0 1.8 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 CQR59117.1 - 7.9e-05 22.4 0.3 0.0003 20.6 0.3 1.9 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family MFS_1 PF07690.16 CQR59118.1 - 2.6e-43 148.3 68.1 2.6e-43 148.3 68.1 2.5 2 1 0 2 2 2 1 Major Facilitator Superfamily YyzF PF14116.6 CQR59119.1 - 1.1e-19 70.2 4.1 1.2e-19 70.1 4.1 1.0 1 0 0 1 1 1 1 YyzF-like protein Peptidase_M3 PF01432.20 CQR59120.1 - 3.5e-17 62.8 0.4 3.5e-16 59.5 0.0 2.4 2 1 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 CQR59120.1 - 7.8e-10 38.9 0.5 3.2e-09 36.9 0.0 2.4 2 0 0 2 2 2 1 Oligopeptidase F Filament PF00038.21 CQR59120.1 - 0.0092 15.6 2.5 0.0099 15.5 0.1 1.9 2 0 0 2 2 2 1 Intermediate filament protein ABC_tran PF00005.27 CQR59121.1 - 3.9e-28 98.7 0.0 6.8e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 CQR59121.1 - 3.5e-08 33.6 0.9 0.0018 18.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_membrane PF00664.23 CQR59121.1 - 2e-06 27.7 12.5 3.6e-06 26.8 12.5 1.4 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_29 PF13555.6 CQR59121.1 - 5.8e-05 22.7 0.1 0.00012 21.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 CQR59121.1 - 0.00021 21.2 0.0 0.00038 20.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 CQR59121.1 - 0.0014 18.1 0.1 0.036 13.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 CQR59121.1 - 0.015 15.4 0.5 0.039 14.0 0.5 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.17 CQR59121.1 - 0.019 15.1 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_30 PF13604.6 CQR59121.1 - 0.039 13.7 0.4 0.092 12.5 0.4 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 CQR59121.1 - 0.073 13.5 0.1 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 CQR59121.1 - 0.13 12.8 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 CQR59121.1 - 0.15 11.8 0.2 0.24 11.1 0.2 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DLIC PF05783.11 CQR59121.1 - 0.15 10.9 0.1 0.24 10.2 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 CQR59121.1 - 0.17 11.6 0.5 0.31 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 CQR59122.1 - 1.1e-30 106.9 0.0 1.8e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 CQR59122.1 - 8.5e-25 87.9 12.3 1.2e-24 87.5 12.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 CQR59122.1 - 0.00014 21.8 0.5 0.22 11.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 CQR59122.1 - 0.00018 21.1 0.2 0.00047 19.8 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 CQR59122.1 - 0.0026 17.2 0.1 0.26 10.7 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 CQR59122.1 - 0.0081 16.7 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 CQR59122.1 - 0.046 13.6 0.1 0.085 12.8 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase GTP_EFTU PF00009.27 CQR59122.1 - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_24 PF13479.6 CQR59122.1 - 0.19 11.5 0.1 0.35 10.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 CQR59122.1 - 0.19 11.8 0.4 0.48 10.5 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase Cyt_bd_oxida_II PF02322.15 CQR59123.1 - 2.7e-106 355.3 36.4 3.1e-106 355.2 36.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Cyt_bd_oxida_I PF01654.17 CQR59124.1 - 4e-177 589.0 25.8 4.5e-177 588.8 25.8 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I DUF4231 PF14015.6 CQR59124.1 - 6.8 7.2 7.1 2.6 8.6 0.4 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) YdjO PF14169.6 CQR59125.1 - 1e-30 105.2 2.6 1.2e-30 105.0 2.6 1.1 1 0 0 1 1 1 1 Cold-inducible protein YdjO CSD PF00313.22 CQR59126.1 - 6.5e-31 106.0 2.7 7.1e-31 105.9 2.7 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 CQR59126.1 - 0.0039 16.8 1.4 0.0045 16.6 1.4 1.5 1 1 0 1 1 1 1 Ribonuclease B OB domain S1 PF00575.23 CQR59126.1 - 0.023 15.0 0.0 0.027 14.8 0.0 1.2 1 0 0 1 1 1 0 S1 RNA binding domain Trypsin_2 PF13365.6 CQR59127.1 - 8.3e-29 101.4 1.1 1.5e-28 100.6 1.1 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 CQR59127.1 - 4.8e-16 58.8 0.2 1.5e-15 57.2 0.2 2.0 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 CQR59127.1 - 2e-12 47.4 0.2 4.1e-12 46.4 0.2 1.4 1 0 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 CQR59127.1 - 2.2e-05 24.2 0.0 7.7e-05 22.5 0.0 2.0 1 0 0 1 1 1 1 PDZ domain Sdh_cyt PF01127.22 CQR59127.1 - 0.055 13.5 0.1 0.089 12.8 0.1 1.3 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF31 PF01732.16 CQR59127.1 - 0.091 12.3 0.1 7.1 6.1 0.1 2.3 2 0 0 2 2 2 0 Putative peptidase (DUF31) DUF898 PF05987.13 CQR59127.1 - 0.21 10.6 0.0 0.94 8.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF898) NHase_alpha PF02979.16 CQR59128.1 - 0.16 11.3 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Nitrile hydratase, alpha chain Lactamase_B PF00753.27 CQR59129.1 - 3e-24 86.1 0.2 3.9e-24 85.8 0.2 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CQR59129.1 - 1e-23 83.9 0.0 1.3e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 CQR59129.1 - 7.9e-05 22.6 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 CQR59129.1 - 0.022 14.2 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain YycI PF09648.10 CQR59130.1 - 1.7e-15 57.3 0.0 1.4e-14 54.3 0.0 1.9 1 1 0 1 1 1 1 YycH protein YycH PF07435.11 CQR59131.1 - 2e-38 132.5 0.1 2.4e-38 132.3 0.1 1.0 1 0 0 1 1 1 1 YycH protein HATPase_c PF02518.26 CQR59132.1 - 1.7e-28 99.4 0.3 4.4e-28 98.0 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 CQR59132.1 - 3.3e-18 65.5 1.7 5.4e-18 64.8 0.3 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 CQR59132.1 - 5.4e-17 61.9 0.0 8.7e-16 58.0 0.0 2.5 2 0 0 2 2 2 1 HAMP domain PAS_4 PF08448.10 CQR59132.1 - 9.7e-07 29.0 0.0 2.9e-06 27.5 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 CQR59132.1 - 1.4e-05 24.9 0.0 4e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 CQR59132.1 - 8.4e-05 22.4 0.0 0.00018 21.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 CQR59132.1 - 0.00073 19.5 0.1 0.005 16.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 CQR59132.1 - 0.00082 19.6 0.0 0.0096 16.2 0.0 2.8 2 1 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 CQR59132.1 - 0.002 18.0 0.0 0.0049 16.7 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 CQR59132.1 - 0.0034 17.5 0.1 0.059 13.5 0.0 2.9 2 1 0 2 2 2 1 PAS fold SpoVT_C PF15714.5 CQR59132.1 - 0.037 14.1 0.6 0.18 11.9 0.3 2.3 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor ArlS_N PF18719.1 CQR59132.1 - 0.038 14.2 1.1 0.21 11.8 0.1 2.5 2 0 0 2 2 2 0 ArlS sensor domain sCache_3_3 PF17202.4 CQR59132.1 - 0.33 11.4 2.3 0.57 10.6 0.4 2.4 3 0 0 3 3 2 0 Single cache domain 3 4HB_MCP_1 PF12729.7 CQR59132.1 - 8.9 5.8 7.4 2.1 7.9 1.6 2.6 2 1 0 2 2 2 0 Four helix bundle sensory module for signal transduction Response_reg PF00072.24 CQR59133.1 - 2.9e-28 98.3 0.1 4.7e-28 97.6 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 CQR59133.1 - 3.1e-27 94.4 0.1 6.2e-27 93.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Peptidase_M23 PF01551.22 CQR59134.1 - 3.7e-33 113.6 3.0 3.7e-33 113.6 3.0 3.0 4 0 0 4 4 4 1 Peptidase family M23 G5 PF07501.12 CQR59134.1 - 7.1e-16 58.4 8.4 7.1e-16 58.4 8.4 2.4 2 0 0 2 2 2 1 G5 domain LysM PF01476.20 CQR59134.1 - 2.5e-08 33.8 0.2 7e-08 32.4 0.2 1.8 1 0 0 1 1 1 1 LysM domain DUF2969 PF11184.8 CQR59134.1 - 0.083 13.3 0.8 2.6 8.5 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2969) DUF4179 PF13786.6 CQR59135.1 - 0.058 13.9 0.1 0.16 12.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Neur_chan_memb PF02932.16 CQR59135.1 - 1 9.4 5.0 2.7 8.0 5.0 1.6 1 1 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Adenylsucc_synt PF00709.21 CQR59136.1 - 2.1e-182 606.7 0.5 2.4e-182 606.5 0.5 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase DnaB_C PF03796.15 CQR59137.1 - 3e-118 393.8 1.0 4.7e-118 393.1 1.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 CQR59137.1 - 6.4e-36 122.5 0.2 1.5e-35 121.4 0.2 1.7 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 CQR59137.1 - 5.9e-14 52.1 0.0 9.6e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 CQR59137.1 - 1e-06 28.3 0.3 3.3e-06 26.6 0.2 1.9 1 1 0 1 1 1 1 KaiC AAA PF00004.29 CQR59137.1 - 0.00021 21.7 0.1 0.00092 19.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Ribosomal_L9_C PF03948.14 CQR59138.1 - 1.4e-29 102.4 1.8 2e-29 101.9 1.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L9, C-terminal domain Ribosomal_L9_N PF01281.19 CQR59138.1 - 4.7e-21 74.1 0.2 9.9e-21 73.0 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain DHH PF01368.20 CQR59139.1 - 1.1e-22 80.1 0.1 2.3e-22 79.1 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 CQR59139.1 - 3e-11 43.9 0.2 3e-11 43.9 0.2 2.1 3 0 0 3 3 3 1 DHHA1 domain PAS_9 PF13426.7 CQR59139.1 - 0.0069 16.6 0.0 0.022 15.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain DUF2232 PF09991.9 CQR59140.1 - 1.3e-36 126.3 35.1 1.5e-36 126.1 35.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2232) MazG-like PF12643.7 CQR59141.1 - 2e-24 85.7 0.1 2.3e-24 85.5 0.1 1.1 1 0 0 1 1 1 1 MazG-like family CBS PF00571.28 CQR59142.1 - 9.1e-16 58.1 0.0 2.6e-08 34.2 0.0 2.1 2 0 0 2 2 2 2 CBS domain LytR_cpsA_psr PF03816.14 CQR59143.1 - 9.1e-41 139.5 0.3 1.3e-40 139.0 0.3 1.2 1 0 0 1 1 1 1 Cell envelope-related transcriptional attenuator domain Nup188 PF10487.9 CQR59143.1 - 0.22 9.4 0.0 0.28 9.0 0.0 1.1 1 0 0 1 1 1 0 Nucleoporin subcomplex protein binding to Pom34 SBP_bac_5 PF00496.22 CQR59144.1 - 3.7e-77 259.8 1.5 4.9e-77 259.4 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MutS_V PF00488.21 CQR59145.1 - 1.7e-34 119.5 0.0 2.6e-34 118.9 0.0 1.3 1 0 0 1 1 1 1 MutS domain V BRE1 PF08647.11 CQR59145.1 - 0.014 15.4 1.2 0.25 11.4 0.1 2.9 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase AAA_21 PF13304.6 CQR59145.1 - 0.016 15.0 0.1 6.5 6.5 0.1 2.5 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Ribosomal_S18 PF01084.20 CQR59146.1 - 3.8e-26 91.0 0.9 5e-26 90.7 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S18 SSB PF00436.25 CQR59147.1 - 1.4e-36 124.7 0.1 1.9e-36 124.3 0.1 1.2 1 0 0 1 1 1 1 Single-strand binding protein family Phage_SSB PF16773.5 CQR59147.1 - 0.077 13.1 2.6 0.11 12.5 1.4 1.8 2 0 0 2 2 2 0 Lactococcus phage single-stranded DNA binding protein Ribosomal_S6 PF01250.17 CQR59148.1 - 1.6e-30 105.2 0.9 1.7e-30 105.1 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S6 PepSY PF03413.19 CQR59148.1 - 0.01 16.4 0.2 0.016 15.7 0.2 1.4 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain YjzC PF14168.6 CQR59149.1 - 2.7e-25 88.5 2.7 3.2e-25 88.3 2.7 1.1 1 0 0 1 1 1 1 YjzC-like protein DUF5014 PF16406.5 CQR59149.1 - 0.03 14.6 0.1 0.03 14.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5014) DUF951 PF06107.11 CQR59150.1 - 7.5e-30 102.6 2.6 8.7e-30 102.4 2.6 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF951) MS_channel PF00924.18 CQR59151.1 - 2.7e-38 131.6 2.1 4e-38 131.0 2.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Colicin_V PF02674.16 CQR59151.1 - 0.019 14.9 2.3 0.037 14.0 1.8 1.7 1 1 0 1 1 1 0 Colicin V production protein DUF3343 PF11823.8 CQR59152.1 - 6.1e-18 64.1 0.1 7.5e-18 63.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3343) DUF1256 PF06866.11 CQR59153.1 - 7.5e-65 217.3 0.0 8.6e-65 217.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1256) Peptidase_A25 PF03418.14 CQR59153.1 - 0.00046 19.2 0.1 0.031 13.2 0.1 2.2 1 1 0 1 1 1 1 Germination protease DUF4446 PF14584.6 CQR59154.1 - 1.2e-45 155.2 0.8 1.3e-45 155.0 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4446) Lectin_N PF03954.14 CQR59154.1 - 0.068 12.9 0.2 0.1 12.4 0.2 1.2 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain MLANA PF14991.6 CQR59154.1 - 0.091 13.0 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein melan-A SlyX PF04102.12 CQR59154.1 - 0.34 11.6 4.7 0.74 10.5 0.9 2.6 2 1 1 3 3 3 0 SlyX Aminotran_5 PF00266.19 CQR59155.1 - 1.9e-91 306.8 0.0 2.2e-91 306.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 CQR59155.1 - 1.1e-09 38.0 0.0 1.9e-08 33.9 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 CQR59155.1 - 2e-08 33.2 0.0 6.4e-08 31.5 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 CQR59155.1 - 1e-05 25.0 0.1 1.2e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 CQR59155.1 - 0.00014 21.3 0.0 0.00041 19.8 0.0 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family ParBc PF02195.18 CQR59156.1 - 2.9e-28 98.0 0.2 7e-28 96.8 0.2 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_ParB PF17762.1 CQR59156.1 - 5.9e-20 70.8 0.6 5.9e-20 70.8 0.6 2.8 3 0 0 3 3 3 1 HTH domain found in ParB protein DUF1016_N PF17761.1 CQR59156.1 - 9.5e-05 22.6 0.1 0.00039 20.6 0.0 2.1 2 1 0 2 2 2 1 DUF1016 N-terminal domain HTH_3 PF01381.22 CQR59156.1 - 0.0023 18.0 0.2 0.022 14.8 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix KorB PF08535.10 CQR59156.1 - 0.0025 17.8 0.1 0.27 11.3 0.0 2.7 2 1 0 2 2 2 1 KorB domain Syntaxin-6_N PF09177.11 CQR59156.1 - 0.0041 17.6 0.4 0.01 16.4 0.4 1.7 1 0 0 1 1 1 1 Syntaxin 6, N-terminal Sigma70_r4 PF04545.16 CQR59156.1 - 0.076 12.5 0.0 20 4.8 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 PhoU PF01895.19 CQR59156.1 - 0.13 12.7 1.5 0.47 11.0 0.2 2.5 2 1 1 3 3 3 0 PhoU domain SlyX PF04102.12 CQR59156.1 - 6.5 7.5 6.8 5.5 7.7 0.4 3.4 3 1 0 3 3 3 0 SlyX AAA_31 PF13614.6 CQR59157.1 - 1.7e-74 249.5 3.5 1e-73 247.0 3.0 1.9 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 CQR59157.1 - 1.2e-27 96.5 0.2 1.5e-27 96.2 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 CQR59157.1 - 3.4e-14 52.9 1.5 5.4e-14 52.3 1.5 1.3 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 CQR59157.1 - 1.7e-13 50.5 0.5 9.2e-12 44.8 0.5 2.2 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 CQR59157.1 - 1.3e-12 47.8 0.0 1.9e-12 47.2 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 CQR59157.1 - 2.7e-12 46.7 2.1 1.1e-11 44.6 2.1 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 CQR59157.1 - 2.3e-09 36.9 0.9 8.3e-09 35.0 0.9 2.0 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 CQR59157.1 - 0.00059 19.5 0.6 1.3 8.6 0.0 2.5 2 1 0 2 2 2 2 SRP54-type protein, GTPase domain VirC1 PF07015.11 CQR59157.1 - 0.0039 16.5 0.7 0.009 15.3 0.1 1.8 2 0 0 2 2 2 1 VirC1 protein MeaB PF03308.16 CQR59157.1 - 0.02 13.9 0.4 0.034 13.1 0.4 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 CQR59157.1 - 0.053 13.3 0.1 0.14 12.0 0.1 1.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 CQR59157.1 - 0.082 11.1 0.6 0.13 10.4 0.6 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase ATP_bind_1 PF03029.17 CQR59157.1 - 0.14 11.9 0.3 12 5.6 0.2 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ParBc PF02195.18 CQR59158.1 - 4.3e-27 94.2 0.2 9.1e-27 93.2 0.2 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_ParB PF17762.1 CQR59158.1 - 7.6e-17 60.9 3.0 7.6e-17 60.9 3.0 2.3 3 0 0 3 3 3 1 HTH domain found in ParB protein HTH_50 PF18024.1 CQR59158.1 - 0.00083 18.9 0.0 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain KorB PF08535.10 CQR59158.1 - 0.0028 17.7 0.0 0.01 15.8 0.0 2.0 2 0 0 2 2 2 1 KorB domain HTH_3 PF01381.22 CQR59158.1 - 0.0033 17.4 0.3 0.011 15.8 0.3 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.6 CQR59158.1 - 0.014 15.1 1.0 0.031 14.0 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain BUD22 PF09073.10 CQR59158.1 - 0.017 14.5 2.1 0.023 14.1 2.1 1.2 1 0 0 1 1 1 0 BUD22 HTH_11 PF08279.12 CQR59158.1 - 0.025 14.5 1.1 0.065 13.2 0.6 2.0 2 0 0 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.12 CQR59158.1 - 0.027 14.1 0.3 0.33 10.7 0.0 2.5 1 1 1 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 CQR59158.1 - 0.045 13.3 0.4 0.18 11.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 TrmB PF01978.19 CQR59158.1 - 0.047 13.6 0.2 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GidB PF02527.15 CQR59159.1 - 2.6e-56 189.8 0.0 3.1e-56 189.6 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 CQR59159.1 - 3.8e-05 23.5 0.0 5.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 CQR59159.1 - 0.00077 19.1 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 CQR59159.1 - 0.00098 19.8 0.0 0.051 14.3 0.0 2.4 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_16 PF10294.9 CQR59159.1 - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_12 PF08242.12 CQR59159.1 - 0.14 12.9 0.0 0.43 11.4 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain GIDA PF01134.22 CQR59160.1 - 3.5e-173 576.2 0.0 4.8e-173 575.7 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A GIDA_assoc PF13932.6 CQR59160.1 - 4.7e-77 258.9 0.3 7.2e-77 258.3 0.3 1.3 1 0 0 1 1 1 1 GidA associated domain FAD_binding_2 PF00890.24 CQR59160.1 - 4.6e-07 29.3 7.0 0.00059 19.0 2.3 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 CQR59160.1 - 6.9e-07 29.0 0.2 1.4e-06 27.9 0.2 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 CQR59160.1 - 9.7e-07 28.3 1.6 8.7e-06 25.2 1.6 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 CQR59160.1 - 0.00018 21.2 2.0 0.34 10.4 1.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 CQR59160.1 - 0.0011 19.4 0.2 0.0037 17.8 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 CQR59160.1 - 0.0015 17.8 0.7 0.21 10.8 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 CQR59160.1 - 0.0051 16.1 2.2 0.013 14.8 0.7 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 CQR59160.1 - 0.0065 15.9 0.5 0.011 15.1 0.5 1.3 1 0 0 1 1 1 1 ThiF family HI0933_like PF03486.14 CQR59160.1 - 0.013 14.2 1.9 0.042 12.6 0.7 2.3 3 0 0 3 3 3 0 HI0933-like protein Thi4 PF01946.17 CQR59160.1 - 0.057 12.7 0.3 1.4 8.1 0.1 2.2 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.12 CQR59160.1 - 0.14 11.2 0.8 0.43 9.6 0.9 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein MnmE_helical PF12631.7 CQR59161.1 - 2.8e-59 200.8 3.6 3.5e-59 200.4 3.6 1.1 1 0 0 1 1 1 1 MnmE helical domain TrmE_N PF10396.9 CQR59161.1 - 2.9e-38 130.7 0.1 7.9e-38 129.3 0.0 1.8 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.23 CQR59161.1 - 3.7e-25 88.2 0.2 8.5e-25 87.1 0.2 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CQR59161.1 - 5.3e-13 48.8 0.4 9.3e-13 48.0 0.4 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 CQR59161.1 - 2.2e-06 27.7 0.0 0.0085 16.0 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 CQR59161.1 - 1.5e-05 25.1 0.2 0.021 14.9 0.0 2.5 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.16 CQR59161.1 - 0.00064 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family MMR_HSR1_Xtn PF16897.5 CQR59161.1 - 0.00073 19.5 0.1 0.0044 17.0 0.1 2.2 1 1 1 2 2 2 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 CQR59161.1 - 0.00092 18.7 0.4 0.0052 16.2 0.4 2.0 1 1 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 CQR59161.1 - 0.0016 18.6 0.0 0.0031 17.7 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 CQR59161.1 - 0.0057 17.2 0.0 0.012 16.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter GTP_EFTU PF00009.27 CQR59161.1 - 0.0062 16.1 0.1 0.39 10.2 0.1 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 CQR59161.1 - 0.0063 16.1 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 Ras family ABC_ATPase PF09818.9 CQR59161.1 - 0.008 15.0 0.0 0.11 11.3 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_15 PF13175.6 CQR59161.1 - 0.021 14.5 0.0 0.06 13.1 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 CQR59161.1 - 0.088 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 CQR59161.1 - 0.091 13.1 0.0 0.25 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain TniB PF05621.11 CQR59161.1 - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein Glu_cys_ligase PF04262.14 CQR59161.1 - 0.2 10.3 0.2 12 4.4 0.0 2.2 2 0 0 2 2 2 0 Glutamate-cysteine ligase Jag_N PF14804.6 CQR59162.1 - 1.2e-20 73.6 3.5 7.2e-20 71.1 0.3 2.6 2 1 0 2 2 2 1 Jag N-terminus KH_4 PF13083.6 CQR59162.1 - 1.9e-17 62.9 0.1 8.4e-17 60.8 0.1 2.0 2 0 0 2 2 2 1 KH domain R3H PF01424.22 CQR59162.1 - 9.2e-17 60.8 0.2 2.2e-16 59.6 0.2 1.7 1 0 0 1 1 1 1 R3H domain Lambda_tail_I PF06805.12 CQR59162.1 - 0.068 13.5 0.0 0.25 11.7 0.0 2.0 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I GAF_2 PF13185.6 CQR59162.1 - 0.077 13.3 0.1 0.33 11.3 0.0 2.0 1 1 0 2 2 2 0 GAF domain 60KD_IMP PF02096.20 CQR59163.1 - 2.5e-58 196.7 15.4 4e-58 196.0 15.4 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein LAP1C PF05609.12 CQR59163.1 - 0.019 14.1 0.1 0.037 13.1 0.1 1.4 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) SPC25 PF06703.11 CQR59163.1 - 0.21 11.4 1.7 4.7 7.0 0.1 2.3 2 0 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) EMC3_TMCO1 PF01956.16 CQR59163.1 - 0.41 10.4 18.1 0.012 15.4 10.0 2.5 2 1 2 4 4 4 0 Integral membrane protein EMC3/TMCO1-like Ribonuclease_P PF00825.18 CQR59164.1 - 9.1e-34 115.9 4.7 1e-33 115.7 4.7 1.0 1 0 0 1 1 1 1 Ribonuclease P RNase_E_G PF10150.9 CQR59164.1 - 0.0016 18.0 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease E/G family Zn_Tnp_IS1 PF03811.13 CQR59164.1 - 0.012 15.3 0.1 0.046 13.5 0.1 2.0 1 0 0 1 1 1 0 InsA N-terminal domain Ribosomal_L34 PF00468.17 CQR59165.1 - 2.3e-21 75.5 8.4 2.5e-21 75.4 8.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Paenibacillus_riograndensis_SBR5-SBR5_T/GCA_000981585.1_SBR5_T__protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Paenibacillus_riograndensis_SBR5-SBR5_T/GCA_000981585.1_SBR5_T__protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Paenibacillus_riograndensis_SBR5-SBR5_T/GCA_000981585.1_SBR5_T__protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Paenibacillus_riograndensis_SBR5-SBR5_T/GCA_000981585.1_SBR5_T__protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 03:58:56 2019 # [ok]